BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010711
(503 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225463572|ref|XP_002270172.1| PREDICTED: F-box/LRR-repeat protein 14 [Vitis vinifera]
gi|297743556|emb|CBI36423.3| unnamed protein product [Vitis vinifera]
Length = 578
Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/503 (80%), Positives = 459/503 (91%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQIFNELV+S+CLT+VSL+AF+DCALQD+ LG+YPGV+D WMDVI+SQG SLL
Sbjct: 76 MLPRDISQQIFNELVFSQCLTDVSLKAFQDCALQDIYLGEYPGVSDSWMDVISSQGVSLL 135
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGS++T+SGLIHLKDC+NLQ+L+ N+C QISD GL+H+ GLSNLT+LSFRRNNAIT
Sbjct: 136 SVDLSGSEITNSGLIHLKDCTNLQALNLNYCDQISDHGLKHISGLSNLTTLSFRRNNAIT 195
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AQGM AF+ L+NLVKLDLERC IHGGL++LKGL KLESLNI C+CITD+D+KPLSGLT
Sbjct: 196 AQGMSAFSSLVNLVKLDLERCPGIHGGLIHLKGLTKLESLNINMCHCITDADLKPLSGLT 255
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK L+IS SKVTD G+AYLKGL KL LLN+EGCPVTAACL+SLS L SL LNLNR L
Sbjct: 256 NLKGLEISRSKVTDDGVAYLKGLHKLALLNMEGCPVTAACLESLSDLPSLLSLNLNRSML 315
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
SDDGCE F++ +L+VLNLGFN++TD CLVHLKGLTNLESLNLDSC I DEGL NLTGL
Sbjct: 316 SDDGCENFARQENLRVLNLGFNDLTDACLVHLKGLTNLESLNLDSCRICDEGLANLTGLR 375
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
+LKCLELSDT+VGS+GLRHLSGL NLESINLSFT ++D LRKL+ LSSLKSLNLDARQI
Sbjct: 376 HLKCLELSDTEVGSNGLRHLSGLANLESINLSFTAVTDSGLRKLSALSSLKSLNLDARQI 435
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
TD GLAALTSLTGLTHLDLFGARITDSG +YLRNFKNL+SLEICGGGLTDAGVK+IKDL+
Sbjct: 436 TDAGLAALTSLTGLTHLDLFGARITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLT 495
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
LT+LNLSQNCNLTDK+LELISGLT LVSL+VSNSRIT+AGL+HLK LKNL+SLTL+SCK
Sbjct: 496 CLTVLNLSQNCNLTDKSLELISGLTALVSLSVSNSRITNAGLQHLKQLKNLKSLTLDSCK 555
Query: 481 VTANDIKRLQSRDLPNLVSFRPE 503
VT NDIK+LQS+DLPNLVSFRPE
Sbjct: 556 VTVNDIKKLQSKDLPNLVSFRPE 578
>gi|449436168|ref|XP_004135866.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cucumis sativus]
gi|449509305|ref|XP_004163550.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cucumis sativus]
Length = 578
Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/503 (78%), Positives = 451/503 (89%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQ I NELVYS+ LT++S++AFRDCALQDL G+ PGVND W+DVI+SQGSS+L
Sbjct: 76 MLPRDLSQLILNELVYSQLLTDISIQAFRDCALQDLHFGECPGVNDAWIDVISSQGSSVL 135
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGS+VTDSGL++L++CSNLQSL+ NFC ISD GL H+ G S LTSLSFR+N+ IT
Sbjct: 136 SVDLSGSEVTDSGLMNLRNCSNLQSLNLNFCEHISDRGLAHIGGFSRLTSLSFRKNSEIT 195
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AQGM FA L+NL++LDLE+C IHGGLV+L+GL KLESLNIKWCNCITDSD+KPLSGLT
Sbjct: 196 AQGMSVFAHLVNLIRLDLEKCPGIHGGLVHLQGLRKLESLNIKWCNCITDSDIKPLSGLT 255
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQISCSKVTD+GIAYLKGL KL+LLNLEGCPVTAACL +LSALG+L YLNL+RC +
Sbjct: 256 NLKGLQISCSKVTDAGIAYLKGLHKLSLLNLEGCPVTAACLYTLSALGALQYLNLSRCHI 315
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
+DDG E+FS +G+LK+LNLGFN+ITDECLVHLKGLTNLESLNLDSC I D+GLVNL L
Sbjct: 316 TDDGSEQFSGLGALKILNLGFNDITDECLVHLKGLTNLESLNLDSCRIEDDGLVNLKALH 375
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LKCLELSDT VGS+GLRHLSGL NLE +NLSFT ++D L+KL+GLSSLKSLNLD RQI
Sbjct: 376 RLKCLELSDTDVGSNGLRHLSGLFNLEKLNLSFTVVTDIGLKKLSGLSSLKSLNLDTRQI 435
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
TD GLA+LT L GLTHLDLFGARITDSG YLRNFKNL+SLEICGGGLTDAGVK+IKDLS
Sbjct: 436 TDIGLASLTGLVGLTHLDLFGARITDSGTNYLRNFKNLQSLEICGGGLTDAGVKNIKDLS 495
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
SL +LNLSQN NLTDK+LELISGLTGLVSLN+SNSRITSAGLRHLK LKNL+ LTLE+C+
Sbjct: 496 SLMVLNLSQNGNLTDKSLELISGLTGLVSLNISNSRITSAGLRHLKTLKNLKQLTLEACR 555
Query: 481 VTANDIKRLQSRDLPNLVSFRPE 503
V+A+DIK+LQS DLPNLVSFRPE
Sbjct: 556 VSASDIKKLQSTDLPNLVSFRPE 578
>gi|359484681|ref|XP_002262830.2| PREDICTED: insulin-like growth factor-binding protein complex acid
labile subunit-like [Vitis vinifera]
gi|296084545|emb|CBI25566.3| unnamed protein product [Vitis vinifera]
Length = 578
Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/503 (75%), Positives = 442/503 (87%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQIF+ V S CLT SLEAFRDCA+QD+ LG+YP VND WMD+I+SQG SLL
Sbjct: 76 MLPRDISQQIFDNFVDSHCLTSASLEAFRDCAIQDVNLGEYPEVNDSWMDIISSQGLSLL 135
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGS VTD GL LKDCSN+Q L FN+C QIS+ GL+++ GLSNLTSLSF+++N +T
Sbjct: 136 SVDLSGSSVTDDGLSLLKDCSNIQVLSFNYCDQISEPGLKNISGLSNLTSLSFKKSNTVT 195
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+AF+ L+NL KLDLERC+RIHGGL++LKGL KLESLNI++C CITDSD+K LSGLT
Sbjct: 196 AEGMRAFSSLVNLAKLDLERCSRIHGGLIHLKGLTKLESLNIRYCKCITDSDLKALSGLT 255
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+LK LQ+SCS +TD GI+YLKGL KL LL++EGC VT +CLDSLSAL +L YLNLNRC L
Sbjct: 256 SLKELQMSCSNITDIGISYLKGLCKLMLLDVEGCHVTTSCLDSLSALVALSYLNLNRCGL 315
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
SD GCEKFS + +LKVLN+GFN ITD CLVHLKGLTNLESLNLDSC I DEGL NLTGL
Sbjct: 316 SDVGCEKFSGLKNLKVLNMGFNNITDACLVHLKGLTNLESLNLDSCSIEDEGLANLTGLS 375
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LKCLELSDT+VGS+GL HLSGLT LES+NLSFT ++D L+KL GL+SLKSLNLDARQI
Sbjct: 376 LLKCLELSDTKVGSNGLCHLSGLTKLESLNLSFTLVTDSGLKKLCGLTSLKSLNLDARQI 435
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
TD GLAA+TSLTGLTHLDLFGARI+D+G LR+FKNL++LEICGGGLTDAGVK+IK L+
Sbjct: 436 TDAGLAAITSLTGLTHLDLFGARISDAGTNCLRHFKNLQTLEICGGGLTDAGVKNIKGLA 495
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
SLTLLNLSQNCNLTDKTLE+ISGLT LVSLNVSNSRIT+ GL+HLKPLKNL SL+LESCK
Sbjct: 496 SLTLLNLSQNCNLTDKTLEMISGLTALVSLNVSNSRITNNGLQHLKPLKNLLSLSLESCK 555
Query: 481 VTANDIKRLQSRDLPNLVSFRPE 503
VTA++I++LQS LPNLVSFRPE
Sbjct: 556 VTASEIRKLQSTALPNLVSFRPE 578
>gi|356519276|ref|XP_003528299.1| PREDICTED: F-box/LRR-repeat protein 14-like isoform 1 [Glycine max]
Length = 577
Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/502 (79%), Positives = 439/502 (87%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQ IFN LVYSR LT SLEAFRDCALQDL LG+Y GVND WM VI+SQGSSLL
Sbjct: 75 MLPRDISQLIFNNLVYSRRLTSASLEAFRDCALQDLYLGEYDGVNDNWMGVISSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGSDVTD GL +LKDC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSGSDVTDFGLTYLKDCESLISLNLNYCDQISDRGLECISGLSNLTSLSFRRNDSIS 194
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AQGM AF+GL+NLVKLDLERC IHGGLV+L+GL KLESLN+KWCNCITD DMKPLS L
Sbjct: 195 AQGMSAFSGLVNLVKLDLERCPGIHGGLVHLRGLTKLESLNLKWCNCITDYDMKPLSELA 254
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+LKSL+IS SKVTD GI++LKGLQKL LLNLEGC VTAACLDSL+ L +L LNLNRC L
Sbjct: 255 SLKSLEISSSKVTDFGISFLKGLQKLALLNLEGCLVTAACLDSLAELPALSNLNLNRCNL 314
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
SD+GC+K S++ +LKVLNLGFN ITD CLVHLKGLT LESLNLDSC IGDEGLVNL GL
Sbjct: 315 SDNGCKKISRLENLKVLNLGFNVITDACLVHLKGLTKLESLNLDSCKIGDEGLVNLAGLE 374
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
L CLELSDT+VGS+GL HLSGL++L+ INLSFT ISD SLRKL+GLSSLKSLNLDA QI
Sbjct: 375 QLNCLELSDTEVGSNGLHHLSGLSSLQKINLSFTMISDSSLRKLSGLSSLKSLNLDAYQI 434
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
TD GLA LTSLTGLT LDLFGARITD G YL+ FKNLRSLEICGG LTDAGVK+IK+LS
Sbjct: 435 TDAGLANLTSLTGLTDLDLFGARITDFGTNYLKKFKNLRSLEICGGVLTDAGVKNIKELS 494
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
SL LNLSQN NLTDKTLELISGLTGLVSLNVSNSRIT+AGL+HLK LKNLRSLTLESCK
Sbjct: 495 SLVCLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRITNAGLQHLKTLKNLRSLTLESCK 554
Query: 481 VTANDIKRLQSRDLPNLVSFRP 502
VTANDIK+L+S LPNLVSFRP
Sbjct: 555 VTANDIKKLKSIYLPNLVSFRP 576
>gi|357458869|ref|XP_003599715.1| F-box/LRR-repeat protein [Medicago truncatula]
gi|355488763|gb|AES69966.1| F-box/LRR-repeat protein [Medicago truncatula]
Length = 585
Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/511 (74%), Positives = 429/511 (83%), Gaps = 8/511 (1%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQI N LVYSR LT SLEAFRDCALQDL LG+Y GV+D WMDVI+SQGSSLL
Sbjct: 75 MLPRDISQQILNNLVYSRRLTGDSLEAFRDCALQDLYLGEYAGVDDSWMDVISSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTD GL +L+DC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSASDVTDFGLTYLQDCRSLISLNLNYCDQISDHGLECISGLSNLTSLSFRRNDSIS 194
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AQGM AF+ L+NLVKLDLERC IHGG V+L+GL KLESLN+KWCNCITDSD+KPLS L
Sbjct: 195 AQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLESLNMKWCNCITDSDIKPLSELA 254
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA--------LGSLFY 232
+L SL+ISCSKVTD GI++L+GLQKL LLNLEGC VT+ACLDSLS L +L
Sbjct: 255 SLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSACLDSLSGCHEHTIPKLPALSN 314
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
LNLNRC +SD GCE+FS++ LKVLNLGFN+I D CL H+KGLT LESLNLDSC IGDEG
Sbjct: 315 LNLNRCNISDRGCERFSRLEKLKVLNLGFNDIGDRCLAHMKGLTKLESLNLDSCKIGDEG 374
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
L NL G L CLELSDT+VG+ GL HLSGL++LE INLSFT +SD LRKL GLSSLKS
Sbjct: 375 LENLAGHKQLICLELSDTEVGNHGLEHLSGLSSLEKINLSFTVVSDSGLRKLCGLSSLKS 434
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
LNLDA QITD GLA LTSLTGLT LDLFGARITD G YL+ FKNLRSLEIC GGLTDAG
Sbjct: 435 LNLDAYQITDAGLATLTSLTGLTDLDLFGARITDVGTNYLKKFKNLRSLEICSGGLTDAG 494
Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 472
VK+IK+LSSL LNLSQN NLTDKT+ELI+GLT LVSLN+SN+RITSAGL+HLK LKNLR
Sbjct: 495 VKNIKELSSLMCLNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITSAGLQHLKTLKNLR 554
Query: 473 SLTLESCKVTANDIKRLQSRDLPNLVSFRPE 503
SLTLESCKVTANDIK+ + LPNLVSFRPE
Sbjct: 555 SLTLESCKVTANDIKKFKLIHLPNLVSFRPE 585
>gi|224120462|ref|XP_002331054.1| predicted protein [Populus trichocarpa]
gi|222872984|gb|EEF10115.1| predicted protein [Populus trichocarpa]
Length = 576
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/503 (74%), Positives = 433/503 (86%), Gaps = 1/503 (0%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQQIFNELV S LT SLEAFRDCALQD+ LG+YPGV D WMDVI+SQGSSLL
Sbjct: 75 MLPRDLSQQIFNELVISHSLTAASLEAFRDCALQDVLLGEYPGVMDSWMDVISSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTD+GL LKDCSNLQ++ N+C ISD GL+HL GL+N+TSLS +++ ++T
Sbjct: 135 SVDLSDSDVTDAGLGLLKDCSNLQAIALNYCNNISDNGLKHLSGLTNITSLSLKKSCSVT 194
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+AF+ L+NL LD+ERC+ IHGGLV+LKGL KLESLNI+ C CITD DMK +SGLT
Sbjct: 195 AEGMRAFSTLLNLENLDMERCSGIHGGLVHLKGLKKLESLNIRCCKCITDMDMKAISGLT 254
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQIS + VTD G++YL+GLQKL +LNLEGC +T ACLDS+SAL +L YLNLNRC L
Sbjct: 255 NLKELQISNTNVTDVGVSYLRGLQKLIMLNLEGCNITTACLDSISALATLAYLNLNRCHL 314
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
DDGC+KFS + +LKVL+L FN++TD CLVHLKGL NLESLNLDSC IGDEG+ NL GL
Sbjct: 315 PDDGCDKFSGLKNLKVLSLAFNDVTDACLVHLKGLKNLESLNLDSCRIGDEGIANLAGL- 373
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LK LELSDT VGSSGLRHLSG+ +LE++NLSFT ++DG LRKL+GL+SL+SLNLDARQI
Sbjct: 374 PLKSLELSDTIVGSSGLRHLSGIPHLENLNLSFTLVTDGGLRKLSGLTSLRSLNLDARQI 433
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
TD GL ALTSLTGLT LDLFGARITDSG L+ FKNL+SLEICGGGLTDAGVK+IKDL
Sbjct: 434 TDAGLTALTSLTGLTRLDLFGARITDSGTNCLKYFKNLKSLEICGGGLTDAGVKNIKDLV 493
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
LT+LNLSQN NLTDKTLELISGLT LVSLNVSNS IT+ GLR+LKPLKNLR+LTLESCK
Sbjct: 494 HLTVLNLSQNTNLTDKTLELISGLTELVSLNVSNSLITNEGLRYLKPLKNLRALTLESCK 553
Query: 481 VTANDIKRLQSRDLPNLVSFRPE 503
VTA++IK+LQS +LPNL S RPE
Sbjct: 554 VTASEIKKLQSTELPNLASVRPE 576
>gi|182407840|gb|ACB87911.1| F-box-containing protein 1 [Malus x domestica]
Length = 580
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/503 (74%), Positives = 446/503 (88%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQQIFNELV S LT+VSLEAFRDCAL+D+ LG+YP V D WM VI+SQGSSLL
Sbjct: 78 MLPRDVSQQIFNELVCSNSLTDVSLEAFRDCALEDIGLGEYPDVKDSWMGVISSQGSSLL 137
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGS+VTDSGL LK CSNLQ+L +N+C +S+ GL+H+ GLSNLTSLSF+R++AI+
Sbjct: 138 SVDLSGSEVTDSGLALLKGCSNLQALAYNYCDHVSEQGLKHISGLSNLTSLSFKRSDAIS 197
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+AF+GL+NL KLDLERC+ IHGG V+LKGL KL+SLN++ C CITDSD+K +SGL
Sbjct: 198 AEGMRAFSGLLNLEKLDLERCSAIHGGFVHLKGLKKLKSLNVRCCRCITDSDLKTISGLI 257
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+L LQ+S +TDSGI+YLKGL KL +LNLEGC VTA+CL S+SAL +L YLNLNRC L
Sbjct: 258 DLNELQLSNCNITDSGISYLKGLHKLRMLNLEGCNVTASCLQSISALVALAYLNLNRCSL 317
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
SD+GC+KFS + +LKVL+LGFNEITD CL++LKGLT+LESLNLDSC IGDEGL NL GL
Sbjct: 318 SDEGCDKFSGLTNLKVLSLGFNEITDACLMYLKGLTSLESLNLDSCKIGDEGLANLAGLT 377
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
+LK LELSDT+VGS+GLRHLSGL NLES+NLSFT ++D SL++L+GL+SLKSLNLDARQI
Sbjct: 378 HLKNLELSDTEVGSNGLRHLSGLKNLESLNLSFTLVTDSSLKRLSGLTSLKSLNLDARQI 437
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
TD GLAA+TSLTGLTHLDLFGARI+DSGA +L+ FKNL+SLEICGGGLTDAGVK+IKDL
Sbjct: 438 TDAGLAAITSLTGLTHLDLFGARISDSGANHLKYFKNLQSLEICGGGLTDAGVKNIKDLV 497
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
LT LN+SQNCNLT+K+LELISGLT LVSLNVSNSRIT+ GL+HLKPLKNLRSLTLESCK
Sbjct: 498 CLTWLNISQNCNLTNKSLELISGLTALVSLNVSNSRITNEGLQHLKPLKNLRSLTLESCK 557
Query: 481 VTANDIKRLQSRDLPNLVSFRPE 503
VTA++I++LQS LPNLVSFRPE
Sbjct: 558 VTASEIRKLQSDALPNLVSFRPE 580
>gi|388500850|gb|AFK38491.1| unknown [Medicago truncatula]
Length = 577
Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/503 (75%), Positives = 424/503 (84%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQI N LVYSR LT SLEAFRDCALQDL LG+Y GV+D WMDVI+SQGSSLL
Sbjct: 75 MLPRDISQQILNNLVYSRRLTGDSLEAFRDCALQDLYLGEYAGVDDSWMDVISSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTD GL +L+DC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSASDVTDFGLTYLQDCRSLISLNLNYCDQISDHGLECISGLSNLTSLSFRRNDSIS 194
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AQGM AF+ L+NLVKLDLERC IHGG V+L+GL KLESLN+KWCNCITDSD+KPLS L
Sbjct: 195 AQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLESLNMKWCNCITDSDIKPLSELA 254
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+L SL+ISCSKVTD GI++L+GLQKL LLNLEGC VT+ACLDSLS L +L LNLNRC +
Sbjct: 255 SLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSACLDSLSELPALSNLNLNRCNI 314
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
S GCE+FS++ LKVLNLGFN+I D CL H+KGLT LESLNLDSC IGDEGL NL G
Sbjct: 315 SGRGCERFSRLEKLKVLNLGFNDIGDRCLAHMKGLTKLESLNLDSCKIGDEGLENLAGHK 374
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
L CLELSDT+VG+ GL HLSGL++LE INLSFT +SD LRKL GLSSLKSLNLDA QI
Sbjct: 375 QLICLELSDTEVGNHGLEHLSGLSSLEKINLSFTVVSDSGLRKLCGLSSLKSLNLDAYQI 434
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
TD GLA LTSLTGLT LDLFGARITD G YL+ FKNLR LEIC GGLTDAGVK+IK+LS
Sbjct: 435 TDAGLATLTSLTGLTDLDLFGARITDVGTNYLKKFKNLRPLEICSGGLTDAGVKNIKELS 494
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
SL LNLSQN NLTDKT+ELI+GLT LVSLN+SN+RIT AGL+HLK LKNLR LTLESCK
Sbjct: 495 SLMCLNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITFAGLQHLKTLKNLRFLTLESCK 554
Query: 481 VTANDIKRLQSRDLPNLVSFRPE 503
VT NDIK+ + LPNLVSFRPE
Sbjct: 555 VTVNDIKKFKLIHLPNLVSFRPE 577
>gi|297844484|ref|XP_002890123.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297335965|gb|EFH66382.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 578
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/503 (77%), Positives = 450/503 (89%), Gaps = 1/503 (0%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LPRDISQQIF+ELVYS+ LT SLEAFRDCA+QDLCLG+YPGVND WMDVI+SQ +SLLS
Sbjct: 76 LPRDISQQIFDELVYSQRLTLKSLEAFRDCAIQDLCLGEYPGVNDDWMDVISSQSTSLLS 135
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
VD SGSD+TDSGL+ LK C+NL+SL+FNFC QIS+ GLEHL GLSNLTSLSFRRN AITA
Sbjct: 136 VDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLEHLSGLSNLTSLSFRRNAAITA 195
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
QGM+A + L+N+ KLDLE+C IHGGLV+L+GL KLESLNIKWCNCITD+DM+PLS LTN
Sbjct: 196 QGMRALSNLVNMKKLDLEKCPGIHGGLVHLRGLTKLESLNIKWCNCITDADMEPLSELTN 255
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQL 240
L+SLQI CS++TD GI+YLKGL KL LLNLEGC VTAACLD+L+AL L +LNLNRC
Sbjct: 256 LRSLQICCSRITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALTGLMFLNLNRCNF 315
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
SD GCEKFS + +LK+LNLG N IT+ CLVHL+GLT LESLNLDSC IGDEGLV+L+G+
Sbjct: 316 SDSGCEKFSDLINLKILNLGMNSITNSCLVHLRGLTKLESLNLDSCRIGDEGLVHLSGML 375
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LK LELSDT+VGS+GLRHLSGL+NLESINLSFT ++D LRKL+GL+SL++LNLDAR +
Sbjct: 376 ELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTLNLDARHV 435
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
TD GL+ALTSLTGLTHLDLFGARITDSG +LRN K L+SLEICGGGLTD GVK+IKDLS
Sbjct: 436 TDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNIKDLS 495
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
SLTLLNLSQN NLTDKTLELISGLTGLVSLNVSNSR++S+GLRHLKPLKNLRSLTLESCK
Sbjct: 496 SLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRSLTLESCK 555
Query: 481 VTANDIKRLQSRDLPNLVSFRPE 503
++ANDI++LQ+ DLPNLV+FRPE
Sbjct: 556 LSANDIRKLQATDLPNLVNFRPE 578
>gi|357468127|ref|XP_003604348.1| F-box/LRR-repeat protein [Medicago truncatula]
gi|355505403|gb|AES86545.1| F-box/LRR-repeat protein [Medicago truncatula]
Length = 573
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/505 (74%), Positives = 423/505 (83%), Gaps = 8/505 (1%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQI N LVYSR LT SLEAFRDCALQDL LG+Y GV+D WMDVI+SQGSSLL
Sbjct: 75 MLPRDISQQILNNLVYSRRLTGDSLEAFRDCALQDLYLGEYAGVDDSWMDVISSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC--IQISDGGLEHLRGLSNLTSLSFRRNNA 118
SVDLS SDVTD GL +L+DC +L SL+ N+C QI D L SNLTSLSFRRN++
Sbjct: 135 SVDLSASDVTDFGLTYLQDCRSLISLNLNYCDKFQIMDWSL------SNLTSLSFRRNDS 188
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I+AQGM AF+ L+NLVKLDLERC IHGG V+L+GL KLESLN+KWCNCITDSD+KPLS
Sbjct: 189 ISAQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLESLNMKWCNCITDSDIKPLSE 248
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L +L SL+ISCSKVTD GI++L+GLQKL LLNLEGC VT+ACLDSLS L +L LNLNRC
Sbjct: 249 LASLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSACLDSLSELPALSNLNLNRC 308
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+SD GCE+FS++ LKVLNLGFN+I D CL H+KGLT LESLNLDSC IGDEGL NL G
Sbjct: 309 NISDRGCERFSRLEKLKVLNLGFNDIGDRCLAHMKGLTKLESLNLDSCKIGDEGLENLAG 368
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L CLELSDT+VG+ GL HLSGL++LE INLSFT +SD LRKL GLSSLKSLNLDA
Sbjct: 369 HKQLICLELSDTEVGNHGLEHLSGLSSLEKINLSFTVVSDSGLRKLCGLSSLKSLNLDAY 428
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
QITD GLA LTSLTGLT LDLFGARITD G YL+ FKNLRSLEIC GGLTDAGVK+IK+
Sbjct: 429 QITDAGLATLTSLTGLTDLDLFGARITDVGTNYLKKFKNLRSLEICSGGLTDAGVKNIKE 488
Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 478
LSSL LNLSQN NLTDKT+ELI+GLT LVSLN+SN+RITSAGL+HLK LKNLRSLTLES
Sbjct: 489 LSSLMCLNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITSAGLQHLKTLKNLRSLTLES 548
Query: 479 CKVTANDIKRLQSRDLPNLVSFRPE 503
CKVTANDIK+ + LPNLVSFRPE
Sbjct: 549 CKVTANDIKKFKLIHLPNLVSFRPE 573
>gi|30684506|ref|NP_563980.2| leucine-rich repeat-containing protein [Arabidopsis thaliana]
gi|23297087|gb|AAN13089.1| unknown protein [Arabidopsis thaliana]
gi|332191234|gb|AEE29355.1| leucine-rich repeat-containing protein [Arabidopsis thaliana]
Length = 585
Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/503 (77%), Positives = 446/503 (88%), Gaps = 1/503 (0%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LPRDISQQIF+ELVYS+ LT SLEAFRDCA+QDL LG+YPGVND WMDVI+SQ +SLLS
Sbjct: 83 LPRDISQQIFDELVYSQRLTLKSLEAFRDCAIQDLYLGEYPGVNDDWMDVISSQSTSLLS 142
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
VD SGSD+TDSGL+ LK C+NL+SL+FNFC QIS+ GL HL GLSNLTSLSFRRN AITA
Sbjct: 143 VDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLVHLSGLSNLTSLSFRRNAAITA 202
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
QGM+A + L+NL KLDLE+C I GGLV+L+ L KLESLNIKWCNCITD+DM+PLS LTN
Sbjct: 203 QGMRALSNLVNLKKLDLEKCPGIDGGLVHLRALTKLESLNIKWCNCITDADMEPLSVLTN 262
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQL 240
L+SLQI CSK+TD GI+YLKGL KL LLNLEGC VTAACLD+L+AL L YLNLNRC
Sbjct: 263 LRSLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMYLNLNRCNF 322
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
SD GCEKFS + +LK+LNLG N IT+ CLVHLKGLT LESLNLDSC IGDEGLV+L+G+
Sbjct: 323 SDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDEGLVHLSGML 382
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LK LELSDT+VGS+GLRHLSGL+NLESINLSFT ++D LRKL+GL+SL++LNLDAR +
Sbjct: 383 ELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTLNLDARHV 442
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
TD GL+ALTSLTGLTHLDLFGARITDSG +LRN K L+SLEICGGGLTD GVK+IKDLS
Sbjct: 443 TDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNIKDLS 502
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
SLTLLNLSQN NLTDKTLELISGLTGLVSLNVSNSR++S+GLRHLKPLKNLRSLTLESCK
Sbjct: 503 SLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRSLTLESCK 562
Query: 481 VTANDIKRLQSRDLPNLVSFRPE 503
++ANDI++LQ+ DLPNLV+FRPE
Sbjct: 563 LSANDIRKLQATDLPNLVNFRPE 585
>gi|13507547|gb|AAK28636.1|AF360339_1 unknown protein [Arabidopsis thaliana]
Length = 585
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/503 (77%), Positives = 445/503 (88%), Gaps = 1/503 (0%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LPRDISQQIF+ELVYS+ LT SLEAFRDCA+QDL LG+YPGVND WMDVI+SQ +SLLS
Sbjct: 83 LPRDISQQIFDELVYSQRLTLKSLEAFRDCAIQDLYLGEYPGVNDDWMDVISSQSTSLLS 142
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
VD SGSD+TDSGL+ LK C+NL+SL+FNFC QIS+ GL HL GLSNLTSLSFRRN AITA
Sbjct: 143 VDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLVHLSGLSNLTSLSFRRNAAITA 202
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
QGM+A + L+NL KLDLE+C I GGLV+L+ L KLESLNIKWCNCITD+DM+PLS LTN
Sbjct: 203 QGMRALSNLVNLKKLDLEKCPGIDGGLVHLRALTKLESLNIKWCNCITDADMEPLSVLTN 262
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQL 240
L+ LQI CSK+TD GI+YLKGL KL LLNLEGC VTAACLD+L+AL L YLNLNRC
Sbjct: 263 LRRLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMYLNLNRCNF 322
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
SD GCEKFS + +LK+LNLG N IT+ CLVHLKGLT LESLNLDSC IGDEGLV+L+G+
Sbjct: 323 SDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDEGLVHLSGML 382
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LK LELSDT+VGS+GLRHLSGL+NLESINLSFT ++D LRKL+GL+SL++LNLDAR +
Sbjct: 383 ELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTLNLDARHV 442
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
TD GL+ALTSLTGLTHLDLFGARITDSG +LRN K L+SLEICGGGLTD GVK+IKDLS
Sbjct: 443 TDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNIKDLS 502
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
SLTLLNLSQN NLTDKTLELISGLTGLVSLNVSNSR++S+GLRHLKPLKNLRSLTLESCK
Sbjct: 503 SLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRSLTLESCK 562
Query: 481 VTANDIKRLQSRDLPNLVSFRPE 503
++ANDI++LQ+ DLPNLV+FRPE
Sbjct: 563 LSANDIRKLQATDLPNLVNFRPE 585
>gi|356548547|ref|XP_003542662.1| PREDICTED: F-box/LRR-repeat protein 14-like [Glycine max]
Length = 578
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/503 (70%), Positives = 419/503 (83%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRDISQQIFNELV S CLTEVSLEAFRDCALQD+ LG+Y GVND WMDVI+SQG SLL
Sbjct: 76 ILPRDISQQIFNELVDSHCLTEVSLEAFRDCALQDIDLGEYVGVNDDWMDVISSQGLSLL 135
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD++GS VTD GL LKDCS+LQ+L ++C Q S+ GL+H+ GLSNLTSLS R+++++
Sbjct: 136 SVDVAGSQVTDDGLRLLKDCSSLQALTLSYCDQFSEYGLKHISGLSNLTSLSIRKSSSVK 195
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
GM+AF+ L NL KLDLERC+ IHGG V+LKGL KLE LNI C C+TDSD+K +S L
Sbjct: 196 PDGMRAFSNLFNLEKLDLERCSEIHGGFVHLKGLKKLEYLNIGCCKCVTDSDIKSISELI 255
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQIS S +TD GI YL+GL+KLT LN+EGC +TAACL+ + AL SL LNLNRC L
Sbjct: 256 NLKELQISNSSITDIGITYLRGLEKLTTLNVEGCNITAACLEFIHALTSLACLNLNRCGL 315
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
SDDG EK S + +LK L+L FN ITD CLVHLK LTNLE LNLDSC IGD GL NLTGL
Sbjct: 316 SDDGFEKISGLKNLKRLSLAFNRITDACLVHLKDLTNLEYLNLDSCRIGDGGLANLTGLT 375
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LK L LSDT +G+SGLR++SGL LE +N+SFT ++D L++L+GL+ LKSLNLDARQI
Sbjct: 376 LLKSLVLSDTDIGNSGLRYISGLKKLEDLNVSFTTVTDNGLKRLSGLTQLKSLNLDARQI 435
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
TD GLA LTSL+GL LDLFGARI+D+G +LR+FKNL+SLEICGGGLTDAGVK+I+++
Sbjct: 436 TDAGLANLTSLSGLITLDLFGARISDNGTTFLRSFKNLQSLEICGGGLTDAGVKNIREIV 495
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
SLT LNLSQNCNLTDKTLELISG+T L SLNVSNSRIT+ GLRHLKPLKNLR+LTLESCK
Sbjct: 496 SLTQLNLSQNCNLTDKTLELISGMTALRSLNVSNSRITNEGLRHLKPLKNLRTLTLESCK 555
Query: 481 VTANDIKRLQSRDLPNLVSFRPE 503
VTA+ IK+LQS DLPNL+SFRPE
Sbjct: 556 VTASGIKKLQSTDLPNLISFRPE 578
>gi|356562920|ref|XP_003549716.1| PREDICTED: F-box/LRR-repeat protein 14-like [Glycine max]
Length = 580
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/503 (70%), Positives = 418/503 (83%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRDISQQIFNELV S CLT++SLEAFRDCALQD+ LG+Y GV+D WMDVI+SQG SLL
Sbjct: 78 ILPRDISQQIFNELVDSHCLTQLSLEAFRDCALQDIDLGEYVGVSDDWMDVISSQGLSLL 137
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+SGS VTD+GL LKDCSNLQ+L NFC Q S+ GL+H+ GLSNLTSLS R+++ +
Sbjct: 138 SVDVSGSQVTDNGLRFLKDCSNLQALTLNFCDQFSEYGLKHISGLSNLTSLSIRKSSTVK 197
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
GM+AF+ L NL KLDLERC+ IHGG V+LKGL KLE LNI C C+ DSDMK +S L
Sbjct: 198 PDGMRAFSNLFNLEKLDLERCSDIHGGFVHLKGLKKLEYLNIGCCKCVMDSDMKSISELI 257
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQIS S +TD GI YL+GL+ LT LN+EGC +TAACL+ + AL SL LNLNRC L
Sbjct: 258 NLKELQISNSSITDIGITYLRGLKMLTTLNVEGCNITAACLEFIHALASLACLNLNRCGL 317
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
SDDG EK S + +LK L+L FN ITD CLVHLKGLTNLE LNLD C IGD+GL NLTGL
Sbjct: 318 SDDGFEKISGLKNLKRLSLAFNRITDACLVHLKGLTNLEYLNLDYCRIGDDGLANLTGLT 377
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LK L LSDT +G+SGLRH+SGL LE +NLSFT ++D L++L+GL+ LKSLNLDARQI
Sbjct: 378 LLKSLVLSDTDIGNSGLRHISGLKKLEDLNLSFTTVTDHGLKRLSGLTQLKSLNLDARQI 437
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
TD GLA LTSL+GL LDLFGARI+D+G +LR+FK L+SLEICGGGLTDAGVK+I+++
Sbjct: 438 TDAGLANLTSLSGLIALDLFGARISDNGTTFLRSFKILQSLEICGGGLTDAGVKNIREIV 497
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
SLT LNLSQNCNLTDKTLELISG+T L SLNVSNSRIT+ GLR+LKPLKNLR+LTLESCK
Sbjct: 498 SLTQLNLSQNCNLTDKTLELISGMTALRSLNVSNSRITNEGLRYLKPLKNLRTLTLESCK 557
Query: 481 VTANDIKRLQSRDLPNLVSFRPE 503
VTA++IK+LQS DLPNL+SFRPE
Sbjct: 558 VTASEIKKLQSTDLPNLISFRPE 580
>gi|357164542|ref|XP_003580088.1| PREDICTED: insulin-like growth factor-binding protein complex acid
labile subunit-like [Brachypodium distachyon]
Length = 580
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/503 (71%), Positives = 423/503 (84%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQQIFNELV LTE SLEAFRDCALQD+CL +YPGV D WM+V+ASQG SLL
Sbjct: 78 MLPRDLSQQIFNELVEWSYLTEESLEAFRDCALQDICLEEYPGVKDAWMEVVASQGQSLL 137
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S SDVTDSGL LKDCSN+QSL N+C QIS+ GL+ L GLSNLTSLS ++ A+T
Sbjct: 138 SVDISCSDVTDSGLDVLKDCSNMQSLACNYCDQISEHGLKTLSGLSNLTSLSLKKCAAVT 197
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA L+NLV LDLERC +IHGGLV+LKGL KLE+LN+++CNCITDSDMK LS LT
Sbjct: 198 AEGAKAFADLVNLVNLDLERCPKIHGGLVHLKGLRKLETLNMRYCNCITDSDMKYLSDLT 257
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+SC K++D G++YLKGL KL LNLEGC VTAACL+++S L SL LNLNRC +
Sbjct: 258 NLRELQLSCCKISDIGVSYLKGLSKLAHLNLEGCAVTAACLEAISGLASLILLNLNRCGI 317
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D+GCE + LKVLNLGFN ITD CLVHLK L +LE LNLDSC IGDEGL++L GL
Sbjct: 318 YDEGCENLEGLVKLKVLNLGFNHITDACLVHLKELVSLECLNLDSCKIGDEGLLHLKGLL 377
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
L+ LELSDT+VGS+GLRHLSGL NL+S+NLSFT ++D L+K+AGL+SLKSLNLD RQI
Sbjct: 378 QLRSLELSDTEVGSNGLRHLSGLRNLQSMNLSFTLVTDIGLKKVAGLNSLKSLNLDNRQI 437
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
TD GLAAL LTGLTHLDLFGARITDSG LR FK L+SLE+CGG +TDAGVK+IKDL
Sbjct: 438 TDNGLAALAGLTGLTHLDLFGARITDSGTNCLRYFKELQSLELCGGLITDAGVKNIKDLK 497
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
+LTLLNLSQN NLTD+TLELISGLT LVSLN+SN+R+++AGL HLK L+NLRSL+L+SCK
Sbjct: 498 ALTLLNLSQNGNLTDRTLELISGLTALVSLNLSNTRVSNAGLHHLKLLQNLRSLSLDSCK 557
Query: 481 VTANDIKRLQSRDLPNLVSFRPE 503
VTA++IK++Q LPNL+S RPE
Sbjct: 558 VTASEIKKIQLASLPNLISVRPE 580
>gi|255583092|ref|XP_002532313.1| protein binding protein, putative [Ricinus communis]
gi|223527982|gb|EEF30065.1| protein binding protein, putative [Ricinus communis]
Length = 597
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/497 (74%), Positives = 424/497 (85%), Gaps = 1/497 (0%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQQIFNELV S CLT+ +LEAFRDCALQD+ LG+YPGV D WMD+++SQGSSLL
Sbjct: 75 MLPRDLSQQIFNELVISHCLTDATLEAFRDCALQDILLGEYPGVKDSWMDIVSSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTD+GL L+ CS+LQ++ N C IS+ GL+H+ GL NLTSLSF+R NA+T
Sbjct: 135 SVDLSDSDVTDTGLALLQACSSLQTMILNRCDCISECGLKHISGLKNLTSLSFKRCNAVT 194
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+ F+ L+NL KLDLERC +IHGGL +LKGL+KLESLNI+ C CI D DMK LS +T
Sbjct: 195 AEGMRGFSSLVNLEKLDLERCPQIHGGLAHLKGLLKLESLNIRCCKCIEDMDMKALSDIT 254
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQIS S VTD G++YLKGLQKL +LNLEGC VT ACLDS+SAL +L YLNLNRC L
Sbjct: 255 NLKELQISNSNVTDLGVSYLKGLQKLIMLNLEGCNVTTACLDSISALVALTYLNLNRCNL 314
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
SDDGC KFS + +LKVL+LGFN ITD CLVHLKGL NLE+LNLDSC IGDEGL NLTGL
Sbjct: 315 SDDGCSKFSGLKNLKVLSLGFNNITDACLVHLKGLMNLENLNLDSCNIGDEGLANLTGL- 373
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LK LELSDT+VGS+GLRHLSGLT LE++NLSFT ++D LR+L+GL SL+SLNLDARQI
Sbjct: 374 PLKSLELSDTEVGSNGLRHLSGLTLLENLNLSFTLVTDSGLRRLSGLLSLRSLNLDARQI 433
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
TD GLAALT LTGL HLDLFGARI+DSG YL+ FKNL+SLEICGGGLTD GVK+IKDL
Sbjct: 434 TDAGLAALTRLTGLIHLDLFGARISDSGTKYLQYFKNLQSLEICGGGLTDDGVKNIKDLV 493
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
LT+LNLSQN NLTDKTLELISGLT LVSLNVSNS IT+ GL +LKPLKNLRSL+LESCK
Sbjct: 494 HLTVLNLSQNSNLTDKTLELISGLTELVSLNVSNSLITNEGLHYLKPLKNLRSLSLESCK 553
Query: 481 VTANDIKRLQSRDLPNL 497
VTA++I +LQS LPNL
Sbjct: 554 VTASEISKLQSTALPNL 570
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 122/267 (45%), Gaps = 61/267 (22%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+++TD+ L+HLK NL++L+ + C I D GL +L GL L SL + + + G++
Sbjct: 336 NNITDACLVHLKGLMNLENLNLDSC-NIGDEGLANLTGLP-LKSLELS-DTEVGSNGLRH 392
Query: 127 FAGL-----INL---------------------VKLDLERCTRIH-GGLVNLKGLMKLES 159
+GL +NL + LD + T L L GL+ L+
Sbjct: 393 LSGLTLLENLNLSFTLVTDSGLRRLSGLLSLRSLNLDARQITDAGLAALTRLTGLIHLDL 452
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL-EGCPVTA 218
+ I+DS K L NL+SL+I +TD G+ +K L LT+LNL + +T
Sbjct: 453 FGAR----ISDSGTKYLQYFKNLQSLEICGGGLTDDGVKNIKDLVHLTVLNLSQNSNLTD 508
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
L+ +S L L LN++ + IT+E L +LK L NL
Sbjct: 509 KTLELISGLTELVSLNVSN------------------------SLITNEGLHYLKPLKNL 544
Query: 279 ESLNLDSCGIGDEGLVNL--TGLCNLK 303
SL+L+SC + + L T L NLK
Sbjct: 545 RSLSLESCKVTASEISKLQSTALPNLK 571
>gi|116310796|emb|CAH67587.1| OSIGBa0112M24.4 [Oryza sativa Indica Group]
gi|218195159|gb|EEC77586.1| hypothetical protein OsI_16540 [Oryza sativa Indica Group]
Length = 581
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/503 (70%), Positives = 416/503 (82%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQ+FNELV LTE L AFRDCALQD+CL YPGV D WM+V ASQG SLL
Sbjct: 79 LLPRDLSQQVFNELVEWNILTEELLGAFRDCALQDICLADYPGVRDAWMEVAASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S SDVTD GL LKDC NLQSL N+C QIS+ GL+ L GLSN+TSLSF++ +A+T
Sbjct: 139 SVDISCSDVTDGGLNQLKDCINLQSLSCNYCDQISEHGLKTLSGLSNVTSLSFKKCSAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA ++NL LDLERC +IHGGLV+LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANMVNLGSLDLERCPKIHGGLVHLKGLRKLEKLNLRYCNGITDSDMKHLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+SC K++D G++YL+GL KL LNLEGC VTAACL+ +S L SL LNL+RC +
Sbjct: 259 NLRELQLSCCKISDLGVSYLRGLSKLAHLNLEGCAVTAACLEVISGLASLVLLNLSRCGV 318
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D+GCE + LKVLNLGFN ITD CLVHLK L NLE LNLDSC IGDEGL +L GL
Sbjct: 319 YDEGCEHLEGLVKLKVLNLGFNYITDACLVHLKELINLECLNLDSCKIGDEGLAHLKGLL 378
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
L+ LELSDT+VGS+GLRHLSGL NL+SINLSFT ++D L+K++GL+SL+SLNLD RQI
Sbjct: 379 KLRSLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKISGLNSLRSLNLDNRQI 438
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
TD GLAALT LTGLTHLDLFGARITD+G L+ FKNL+SLE+CGG +TDAGVK+IKDL
Sbjct: 439 TDNGLAALTCLTGLTHLDLFGARITDAGTNCLKYFKNLQSLEVCGGLITDAGVKNIKDLK 498
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
+LTLLNLSQN NLTDK+LELISGLT LVSLNVSNSR++++GL HLKPL+NLRSL+LESCK
Sbjct: 499 ALTLLNLSQNGNLTDKSLELISGLTALVSLNVSNSRVSNSGLHHLKPLQNLRSLSLESCK 558
Query: 481 VTANDIKRLQSRDLPNLVSFRPE 503
VTA +IK+LQ LPNLVS RPE
Sbjct: 559 VTAIEIKKLQLAALPNLVSVRPE 581
>gi|357478391|ref|XP_003609481.1| F-box/LRR-repeat protein [Medicago truncatula]
gi|355510536|gb|AES91678.1| F-box/LRR-repeat protein [Medicago truncatula]
Length = 576
Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/503 (71%), Positives = 418/503 (83%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRDISQ IFNELV S CLTE SL AFRDCALQD+ LG+Y GVND WMDVIASQG SLL
Sbjct: 74 ILPRDISQLIFNELVESHCLTETSLNAFRDCALQDVYLGEYLGVNDGWMDVIASQGPSLL 133
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+VD+SGS+VTD GL LKDC NLQ+L N+C Q S+ GL+HL GLSNLTSLS R++ A+T
Sbjct: 134 AVDVSGSNVTDHGLRLLKDCLNLQALTLNYCDQFSEHGLKHLSGLSNLTSLSIRKSCAVT 193
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
GM+AF+ L+NL KLDLERC+ IHGG V+ KGL KLESLNI C C+TDSDMK +SG
Sbjct: 194 PDGMRAFSNLVNLEKLDLERCSDIHGGFVHFKGLKKLESLNIGCCKCVTDSDMKAISGFI 253
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQIS S +TD GI+YL+GLQKL+ LN+EGC +TAAC + +SAL +L LNLNRC L
Sbjct: 254 NLKELQISNSSITDLGISYLRGLQKLSTLNVEGCSITAACFEYISALAALACLNLNRCGL 313
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
SDDG EKFS + LK L+L FN+ITD CLVHLKGLT LE LNLDSC IGDEGLVNLTGL
Sbjct: 314 SDDGFEKFSGLTGLKRLSLAFNKITDACLVHLKGLTKLEYLNLDSCQIGDEGLVNLTGLT 373
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LK L LSDT+VG+SG+R++SGL LE +NLSFT ++D L++L GL++LKSLNLDARQI
Sbjct: 374 LLKSLVLSDTEVGNSGIRYISGLNKLEDLNLSFTSVTDNGLKRLLGLTNLKSLNLDARQI 433
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
TD GLA LTSL+GL LDLFGARITDSG YLR+FKNL+SLEICGG LTDAGVK+I+++
Sbjct: 434 TDAGLANLTSLSGLITLDLFGARITDSGTTYLRSFKNLQSLEICGGLLTDAGVKNIREIV 493
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
SLT LNLSQNC LTDKTLELISG+T L SLNVSNSR+T+ GLR+LKPLKNLR+L+LESCK
Sbjct: 494 SLTQLNLSQNCKLTDKTLELISGMTALRSLNVSNSRVTNEGLRYLKPLKNLRTLSLESCK 553
Query: 481 VTANDIKRLQSRDLPNLVSFRPE 503
V A DIK+L S DLPNL+SFRPE
Sbjct: 554 VNAADIKKLHSTDLPNLISFRPE 576
>gi|356550632|ref|XP_003543689.1| PREDICTED: F-box/LRR-repeat protein 14-like [Glycine max]
Length = 565
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/512 (71%), Positives = 418/512 (81%), Gaps = 10/512 (1%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPG----------VNDKWMDV 51
LP D+SQ+IFN +VYS LT SL+ FRD ALQD+CLG+Y V+D WMDV
Sbjct: 54 LPPDLSQRIFNNMVYSSYLTPASLQPFRDSALQDICLGEYEYANGGGAAAAIVDDAWMDV 113
Query: 52 IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111
I+SQGSSLL +DLS SDVTD GL L C+N+ SL+ N C QISD GLE + GLSNL SL
Sbjct: 114 ISSQGSSLLHLDLSASDVTDHGLTFLGHCTNIISLNLNHCHQISDHGLECISGLSNLASL 173
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
SFRRN AI+AQG+ F+GLINLVKLDLERC IHG LV+++GL LESLN+ WCNC+ D
Sbjct: 174 SFRRNYAISAQGLNTFSGLINLVKLDLERCPGIHGSLVHIQGLTMLESLNLNWCNCLVDV 233
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
DMKPLS LTNLKSL+IS +KVTD GI++LKGLQKL LLNLEGC VT ACLDSL L +L
Sbjct: 234 DMKPLSVLTNLKSLEISFNKVTDFGISFLKGLQKLNLLNLEGCQVTTACLDSLEELPALS 293
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
LNL+RC LS+DGCEKFS++ +LKVLNLGFN+ITD CL HLKGLT L+SLNLDSC I DE
Sbjct: 294 NLNLSRCNLSNDGCEKFSRLENLKVLNLGFNDITDACLAHLKGLTKLKSLNLDSCRIEDE 353
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
GLV+L G L CLELSDT +GS+GL HLSGL+NLE INLSFT ++D L KL GLSSLK
Sbjct: 354 GLVHLAGHQQLNCLELSDTGIGSNGLHHLSGLSNLEKINLSFTFVNDSGLSKLCGLSSLK 413
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
SLNLDARQ+TDTGLA+LTSLTGLT LDLFGARITD G YL+ FKNLR LEICGG LTD
Sbjct: 414 SLNLDARQVTDTGLASLTSLTGLTELDLFGARITDFGTNYLKCFKNLRLLEICGGELTDD 473
Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 471
GVK+IK+LSSL LNLSQNCNLTD TLELISGLT L+SLNVSNS IT+AGL+HLK LKNL
Sbjct: 474 GVKNIKELSSLKSLNLSQNCNLTDTTLELISGLTDLISLNVSNSGITNAGLQHLKTLKNL 533
Query: 472 RSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 503
RSL+LESCKVTAN IK+LQS DLPNLVSFRP+
Sbjct: 534 RSLSLESCKVTANGIKKLQSTDLPNLVSFRPQ 565
>gi|115459280|ref|NP_001053240.1| Os04g0503500 [Oryza sativa Japonica Group]
gi|113564811|dbj|BAF15154.1| Os04g0503500 [Oryza sativa Japonica Group]
gi|215678755|dbj|BAG95192.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215708842|dbj|BAG94111.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222629150|gb|EEE61282.1| hypothetical protein OsJ_15365 [Oryza sativa Japonica Group]
Length = 581
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/503 (69%), Positives = 415/503 (82%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQ+FNELV LTE L AFRDCALQD+CL YPGV D WM+V ASQG SLL
Sbjct: 79 LLPRDLSQQVFNELVEWNILTEELLGAFRDCALQDICLADYPGVRDAWMEVAASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S SDVTD GL LKDC NLQSL N+C QIS+ GL+ L GLSN+TSLSF++ +A+T
Sbjct: 139 SVDISCSDVTDGGLNQLKDCINLQSLSCNYCDQISEHGLKTLSGLSNVTSLSFKKCSAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA ++NL LDLERC +IHGGLV+LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANMVNLGSLDLERCPKIHGGLVHLKGLRKLEKLNLRYCNGITDSDMKHLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+SC K++D G++YL+GL KL LNLEGC VTAACL+ +S L SL LNL+RC +
Sbjct: 259 NLRELQLSCCKISDLGVSYLRGLSKLAHLNLEGCAVTAACLEVISGLASLVLLNLSRCGV 318
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D+GCE + LKVLNLGFN ITD CLVHLK L NLE LNLDSC IGDEGL +L GL
Sbjct: 319 YDEGCEHLEGLVKLKVLNLGFNYITDACLVHLKELINLECLNLDSCKIGDEGLAHLKGLL 378
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
L+ LELSDT+VGS+GLRHLSGL NL+SINLSFT ++D L+K++GL+SL+SLNLD RQI
Sbjct: 379 KLRSLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKISGLNSLRSLNLDNRQI 438
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
TD GLAALT LTGLTHLDLFGARITD+G L+ FKNL+SLE+CGG +TDAGVK+IKDL
Sbjct: 439 TDNGLAALTCLTGLTHLDLFGARITDAGTNCLKYFKNLQSLEVCGGLITDAGVKNIKDLK 498
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
+LTLLNLSQN NLTDK+LELIS LT LVSLNVSNSR++++GL HLKPL+NLRSL+LESCK
Sbjct: 499 ALTLLNLSQNGNLTDKSLELISRLTALVSLNVSNSRVSNSGLHHLKPLQNLRSLSLESCK 558
Query: 481 VTANDIKRLQSRDLPNLVSFRPE 503
VTA +IK+LQ LPNLVS RPE
Sbjct: 559 VTAIEIKKLQLAALPNLVSVRPE 581
>gi|115447277|ref|NP_001047418.1| Os02g0613200 [Oryza sativa Japonica Group]
gi|47497632|dbj|BAD19701.1| leucine-rich repeat-like protein [Oryza sativa Japonica Group]
gi|113536949|dbj|BAF09332.1| Os02g0613200 [Oryza sativa Japonica Group]
gi|125582867|gb|EAZ23798.1| hypothetical protein OsJ_07510 [Oryza sativa Japonica Group]
gi|215704406|dbj|BAG93840.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 582
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/503 (68%), Positives = 419/503 (83%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQIFNELV S LTE LE FRDCALQD+ LG+YPGVND WM+V+ASQ SLL
Sbjct: 80 VLPRDLSQQIFNELVASNRLTETLLETFRDCALQDIDLGEYPGVNDAWMEVVASQRHSLL 139
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S S++TDSGL L+DC N+QSL N+C IS+ GL L GLSNLTSLSF+ ++ IT
Sbjct: 140 SVDISCSEITDSGLYLLRDCPNMQSLACNYCDMISEHGLGILSGLSNLTSLSFKSSDGIT 199
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+ M+AFA L+NLV LDLERC +IHGGLV+LKGL LESLN+++CN I DSD+K LS LT
Sbjct: 200 AEAMEAFANLVNLVNLDLERCLKIHGGLVHLKGLRNLESLNMRYCNNIADSDIKYLSDLT 259
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQ++C ++TD G++YL+GL KLT LNLEGCPVTAACL+++S L SL LNL+RC +
Sbjct: 260 NLKELQLACCRITDLGVSYLRGLSKLTQLNLEGCPVTAACLEAISGLASLVVLNLSRCGI 319
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
+GCE F + LKVLNLGFN ITD+CL HLK L NLESLNLDSC +GDEGL++L GL
Sbjct: 320 YGEGCENFQGLKKLKVLNLGFNNITDDCLAHLKELINLESLNLDSCKVGDEGLLHLRGLM 379
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LK LELSDT+VGSSGL+HLSGL NLESINLSFT ++D ++K++ L+SLKS+NLD RQI
Sbjct: 380 LLKSLELSDTEVGSSGLQHLSGLRNLESINLSFTLVTDTGMKKISALNSLKSVNLDNRQI 439
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
TD GLAALTSLTGLTHLDLFGARITD G + R FKNL SLE+CGG +TDAGVK+IKDL
Sbjct: 440 TDVGLAALTSLTGLTHLDLFGARITDYGTSCFRFFKNLESLEVCGGLITDAGVKNIKDLK 499
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
+L LNLSQN NLTDKTLELISGLT LVSLNVSN+R+++AGLRHLK L+NLRSL+L+SC+
Sbjct: 500 ALKQLNLSQNVNLTDKTLELISGLTALVSLNVSNTRVSNAGLRHLKDLQNLRSLSLDSCR 559
Query: 481 VTANDIKRLQSRDLPNLVSFRPE 503
VT +++K+LQ+ LPNL+S RPE
Sbjct: 560 VTTSEVKKLQATVLPNLISVRPE 582
>gi|125540271|gb|EAY86666.1| hypothetical protein OsI_08050 [Oryza sativa Indica Group]
Length = 582
Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/503 (68%), Positives = 418/503 (83%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQIFNELV S LTE LE F DCALQD+ LG+YPGVND WM+V+ASQ SLL
Sbjct: 80 VLPRDLSQQIFNELVASNRLTETLLETFWDCALQDIDLGEYPGVNDAWMEVVASQRHSLL 139
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S S++TDSGL L+DC N+QSL N+C IS+ GL L GLSNLTSLSF+ ++ IT
Sbjct: 140 SVDISCSEITDSGLYLLRDCPNMQSLACNYCDMISEHGLGILSGLSNLTSLSFKSSDGIT 199
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+ M+AFA L+NLV LDLERC +IHGGLV+LKGL LESLN+++CN I DSD+K LS LT
Sbjct: 200 AEAMEAFANLVNLVNLDLERCLKIHGGLVHLKGLRNLESLNMRYCNNIADSDIKYLSDLT 259
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQ++C ++TD G++YL+GL KLT LNLEGCPVTAACL+++S L SL LNL+RC +
Sbjct: 260 NLKELQLACCRITDLGVSYLRGLSKLTQLNLEGCPVTAACLEAISGLASLVVLNLSRCGI 319
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
+GCE F + LKVLNLGFN ITD+CL HLK L NLESLNLDSC +GDEGL++L GL
Sbjct: 320 YGEGCENFQGLKKLKVLNLGFNNITDDCLAHLKELINLESLNLDSCKVGDEGLLHLRGLM 379
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LK LELSDT+VGSSGL+HLSGL NLESINLSFT ++D ++K++ L+SLKS+NLD RQI
Sbjct: 380 LLKSLELSDTEVGSSGLQHLSGLRNLESINLSFTLVTDTGMKKISALNSLKSVNLDNRQI 439
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
TD GLAALTSLTGLTHLDLFGARITD G + R FKNL SLE+CGG +TDAGVK+IKDL
Sbjct: 440 TDVGLAALTSLTGLTHLDLFGARITDYGTSCFRFFKNLESLEVCGGLITDAGVKNIKDLK 499
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
+L LNLSQN NLTDKTLELISGLT LVSLNVSN+RI++AGLRHLK L+NLRSL+L+SC+
Sbjct: 500 ALKQLNLSQNVNLTDKTLELISGLTALVSLNVSNTRISNAGLRHLKDLQNLRSLSLDSCR 559
Query: 481 VTANDIKRLQSRDLPNLVSFRPE 503
VT +++K+LQ+ LPNL+S RPE
Sbjct: 560 VTTSEVKKLQATVLPNLISVRPE 582
>gi|357150116|ref|XP_003575347.1| PREDICTED: F-box/LRR-repeat protein 14-like [Brachypodium
distachyon]
Length = 582
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/503 (68%), Positives = 416/503 (82%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LP D+SQQ+FN+LV S CL E SLE FRDCAL D+CLG++PGV D WM+V+ASQ SLL
Sbjct: 80 VLPSDLSQQVFNQLVDSNCLKEASLETFRDCALHDICLGEFPGVKDAWMEVVASQRQSLL 139
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S S+VTDSGL L+DCSN+QSL N+C QIS+ GL L G SNLTSLSF+R++ +T
Sbjct: 140 SVDISCSEVTDSGLNLLRDCSNMQSLVCNYCDQISEHGLGVLSGFSNLTSLSFKRSDGVT 199
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+ FA L+NLV LDLERC +IHGGLV+LKGL KLES+N+++CN ITDSD+K LS LT
Sbjct: 200 AEGMRVFANLVNLVNLDLERCLKIHGGLVHLKGLRKLESINMRYCNNITDSDIKYLSDLT 259
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQ+S ++TD G++YL+GL KL LNLE CPVTAACL +S L SL LNLNRC +
Sbjct: 260 NLKELQLSSCRITDLGVSYLRGLSKLIRLNLESCPVTAACLVDISGLASLMLLNLNRCGI 319
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D+GCE F + LKVLNLGFN ITD CLVHLK L NLE LNLDSC +GD GL++L GL
Sbjct: 320 YDEGCESFKDLKKLKVLNLGFNYITDACLVHLKELINLEFLNLDSCKVGDAGLLHLKGLV 379
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LK LELSDT+VGS+GLRHLSGL L+ I+LSFT ++D ++K++ LSSLKS+NLD+R I
Sbjct: 380 LLKSLELSDTEVGSNGLRHLSGLRTLQRIDLSFTLVTDTGMKKISALSSLKSVNLDSRLI 439
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
TD GLAALT LTGLTHLDLFGARITD+GA+ R FKNL SLE CGG +TD GVK+IK+L
Sbjct: 440 TDVGLAALTGLTGLTHLDLFGARITDNGASCFRYFKNLESLEACGGSITDVGVKNIKELK 499
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
+LTLLNLSQN NLTDKTLELISGLT LVSLNVSNSR+++AGLRHL L+NLRSLTL+SC+
Sbjct: 500 ALTLLNLSQNANLTDKTLELISGLTALVSLNVSNSRVSNAGLRHLNALQNLRSLTLDSCR 559
Query: 481 VTANDIKRLQSRDLPNLVSFRPE 503
VTAN+I++LQ+ LPNL+SFRPE
Sbjct: 560 VTANEIRKLQATALPNLISFRPE 582
>gi|326497793|dbj|BAJ98524.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 583
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/503 (68%), Positives = 414/503 (82%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLP DISQQIF+ELV S LTE SLE FRDCAL D+CLG+YPGV D WM+V+ASQ SLL
Sbjct: 81 MLPSDISQQIFDELVGSNRLTEESLETFRDCALHDICLGEYPGVTDAWMEVVASQRQSLL 140
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S S+VTD GL L DCS++QSL N+C ++S+ G+ L G SNLTSLSF+R++ +T
Sbjct: 141 SVDISCSEVTDGGLNFLSDCSSMQSLSCNYCDRVSEHGIGVLSGFSNLTSLSFKRSDGVT 200
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM FA L+NLV LDLE C +IHGGLV++KGL KLESLN+++CN ITDSD+K LS LT
Sbjct: 201 AEGMSVFADLVNLVNLDLECCLKIHGGLVHMKGLRKLESLNMRYCNYITDSDIKYLSDLT 260
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQ+S ++TD G++YL GL KLT LNLE CPVTAACL+++S L SL LNLNRC +
Sbjct: 261 NLKELQLSSCRITDLGVSYLTGLSKLTHLNLESCPVTAACLEAISGLASLMLLNLNRCGI 320
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D+GCE F + LKVLNLGFN ITD CLVHLKGL NLESLNLDSC IGDEGL++L GL
Sbjct: 321 YDEGCESFEDLKKLKVLNLGFNHITDACLVHLKGLINLESLNLDSCKIGDEGLLHLKGLV 380
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LK LELSDT +GS+GL+HLSGL NL SINLSFT ++D ++K++ L+SLKS+NLD R I
Sbjct: 381 LLKSLELSDTAIGSNGLQHLSGLRNLHSINLSFTLVTDTGMKKISTLNSLKSVNLDNRLI 440
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
TD GLAAL LTGLTHLDLFGAR+TD G ++LR FKNL SLE+CGG +TDAGVK+IKDL
Sbjct: 441 TDVGLAALIGLTGLTHLDLFGARVTDHGTSFLRYFKNLESLEVCGGSITDAGVKNIKDLK 500
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
+LTLLNLSQN LTDKTLELISGLT LVSLNVSNSR+++AG RHLK L+NLRSLTL+SC+
Sbjct: 501 ALTLLNLSQNAKLTDKTLELISGLTALVSLNVSNSRVSNAGFRHLKALQNLRSLTLDSCR 560
Query: 481 VTANDIKRLQSRDLPNLVSFRPE 503
VT N++K+L++ LPNL+S RPE
Sbjct: 561 VTVNEMKKLRATALPNLISVRPE 583
>gi|242076388|ref|XP_002448130.1| hypothetical protein SORBIDRAFT_06g021780 [Sorghum bicolor]
gi|241939313|gb|EES12458.1| hypothetical protein SORBIDRAFT_06g021780 [Sorghum bicolor]
Length = 581
Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/503 (69%), Positives = 417/503 (82%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQIFNELV CLTE SL AFRDCALQD+CLG YPGV D WM+V+ASQG SLL
Sbjct: 79 LLPRDLSQQIFNELVECGCLTEASLGAFRDCALQDVCLGDYPGVTDAWMEVVASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTDSG LKDCS++QSL ++C +IS+ GL+ L G SNLTSLS ++ A+T
Sbjct: 139 SVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDKISEHGLKTLSGFSNLTSLSIKKCAAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA L+NLV LDLERC +IHGGL++LKGL KLE LN+++CNCITDSDMK LS LT
Sbjct: 199 AEGAKAFANLVNLVNLDLERCPKIHGGLIHLKGLKKLEKLNMRYCNCITDSDMKYLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+S K++D G++YL+GL KL LNLEGC VTAACL+ +S L SL LNL+RC +
Sbjct: 259 NLRELQLSSCKISDFGVSYLRGLHKLGHLNLEGCSVTAACLEVISELASLVLLNLSRCGI 318
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D+GCE + LK LNLGFN IT CL+HLK L +LE LNLDSC IGDEGL +L GL
Sbjct: 319 CDEGCENLEGLTKLKALNLGFNHITGACLIHLKDLISLECLNLDSCKIGDEGLFHLKGLI 378
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LK LELSDT+VGS+GLRHLSGL NL+SINLSFT ++D L+K++GLSSLKSLNLD RQI
Sbjct: 379 QLKSLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKISGLSSLKSLNLDNRQI 438
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
TDTGLA+LT+LTGLTHLDLFGARITDSG R FKNL+SLE+CGG +TDAGVK+IKDL
Sbjct: 439 TDTGLASLTNLTGLTHLDLFGARITDSGMNCFRFFKNLQSLEVCGGLITDAGVKNIKDLK 498
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
+LTLLNLSQN NLTDKTLELISGLT LVSLNVSNSR++++GL HLKPL NLRSL+LESC+
Sbjct: 499 ALTLLNLSQNGNLTDKTLELISGLTALVSLNVSNSRVSNSGLHHLKPLLNLRSLSLESCR 558
Query: 481 VTANDIKRLQSRDLPNLVSFRPE 503
VTA++I +L+ LPNL+S RPE
Sbjct: 559 VTASEIDKLRLVALPNLISVRPE 581
>gi|8927653|gb|AAF82144.1|AC034256_8 Contains similarity to F-box protein FBL2 from Homo sapiens
gb|AF176518 and contains multiple Leucine Rich PF|00560
repeats. ESTs gb|Z34572, gb|Z34571, gb|AI100681,
gb|AI100675, gb|AA395320, gb|AI100674, gb|AA651378,
gb|AA007067, gb|T46145, gb|T22090, gb|AI995016,
gb|H36884, gb|AI995066, gb|H37061, gb|T43537 come from
this gene [Arabidopsis thaliana]
Length = 568
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/510 (72%), Positives = 424/510 (83%), Gaps = 32/510 (6%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LPRDISQQIF+ELVYS+ LT SLEAFRDCA+QDL LG+YPGVND WMDVI+SQ +SLLS
Sbjct: 83 LPRDISQQIFDELVYSQRLTLKSLEAFRDCAIQDLYLGEYPGVNDDWMDVISSQSTSLLS 142
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
VD SGSD+TDSGL+ LK C+NL+SL+FNFC QIS+ GL HL GLSNLTSLSFRRN AITA
Sbjct: 143 VDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLVHLSGLSNLTSLSFRRNAAITA 202
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
QGM+A + L+NL KLDLE+C I GGLV+L+ L KLESLNIKWCNCITD+DM+P
Sbjct: 203 QGMRALSNLVNLKKLDLEKCPGIDGGLVHLRALTKLESLNIKWCNCITDADMEP------ 256
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLS-------ALGSLFYL 233
L GL KL LLNLEGC VTAACLD+L+ AL L YL
Sbjct: 257 ------------------LSGLNKLNLLNLEGCRHVTAACLDTLTGLYRHPHALAGLMYL 298
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
NLNRC SD GCEKFS + +LK+LNLG N IT+ CLVHLKGLT LESLNLDSC IGDEGL
Sbjct: 299 NLNRCNFSDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDEGL 358
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
V+L+G+ LK LELSDT+VGS+GLRHLSGL+NLESINLSFT ++D LRKL+GL+SL++L
Sbjct: 359 VHLSGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTL 418
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
NLDAR +TD GL+ALTSLTGLTHLDLFGARITDSG +LRN K L+SLEICGGGLTD GV
Sbjct: 419 NLDARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGV 478
Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 473
K+IKDLSSLTLLNLSQN NLTDKTLELISGLTGLVSLNVSNSR++S+GLRHLKPLKNLRS
Sbjct: 479 KNIKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRS 538
Query: 474 LTLESCKVTANDIKRLQSRDLPNLVSFRPE 503
LTLESCK++ANDI++LQ+ DLPNLV+FRPE
Sbjct: 539 LTLESCKLSANDIRKLQATDLPNLVNFRPE 568
>gi|226501144|ref|NP_001141453.1| uncharacterized protein LOC100273563 [Zea mays]
gi|194704638|gb|ACF86403.1| unknown [Zea mays]
gi|414586493|tpg|DAA37064.1| TPA: regulatory subunit [Zea mays]
Length = 581
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/503 (68%), Positives = 415/503 (82%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQIFNELV CLTE SL AFRDC LQD+CLG YPGV D WM+V+ASQG SLL
Sbjct: 79 LLPRDLSQQIFNELVECGCLTEASLGAFRDCDLQDICLGDYPGVTDAWMEVVASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTDSG LKDCS++QSL ++C QIS+ GL+ L G SNLTSLS ++ A+T
Sbjct: 139 SVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCAAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA L+NLV LDLERC +I+GGL++LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+S K++ G++YL+GL KL LNLEGC VTA CL+ +S L SL LNL+RC +
Sbjct: 259 NLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSRCGI 318
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D+GCE + LK L+LGFN+ITD CL+HLK L NLE LNLDSC IGDEGL +L GL
Sbjct: 319 CDEGCENLKGLTKLKALSLGFNQITDACLIHLKDLVNLECLNLDSCKIGDEGLFHLKGLI 378
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LK LELSDT+VGS+GLRHLSGL NL+SINLSFT ++D L+K++GLSSLKSLNLD RQI
Sbjct: 379 QLKNLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKISGLSSLKSLNLDNRQI 438
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
TDTGLA+LT LTGLTHLDLFGARITDSG + R FKN++SLE+CGG +TDAGVK+IKDL
Sbjct: 439 TDTGLASLTGLTGLTHLDLFGARITDSGMSCFRFFKNIQSLEVCGGLITDAGVKNIKDLK 498
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
+LTLLNLSQN LTDKTLELISGLT LVSLNVSNSR++++GL HLKPL+NLRSL+LESC+
Sbjct: 499 ALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSRVSNSGLHHLKPLQNLRSLSLESCR 558
Query: 481 VTANDIKRLQSRDLPNLVSFRPE 503
VTA+++ +L+ LPNL+S RPE
Sbjct: 559 VTASEMDKLRLVALPNLISVRPE 581
>gi|195647464|gb|ACG43200.1| regulatory subunit [Zea mays]
Length = 581
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/503 (68%), Positives = 413/503 (82%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQIFNELV CLTE SL AFRDC LQD+CLG YPGV D WM+V+ASQG SLL
Sbjct: 79 LLPRDLSQQIFNELVECGCLTEASLGAFRDCDLQDICLGDYPGVTDAWMEVVASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDV DSG LKDCS++Q+L ++C QIS+ GL+ L G SNLTSLS ++ A+T
Sbjct: 139 SVDLSCSDVIDSGFNLLKDCSSMQNLACDYCDQISEHGLKTLSGFSNLTSLSIKKCAAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA L+NLV LDLERC +I+GGL++LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+S K++ G++YL+GL KL LNLEGC VTA CL+ +S L SL LNL+RC +
Sbjct: 259 NLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSRCGI 318
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D+GCE + LK L+LGFN+ITD CL+HLK L NLE LNLDSC IGDEGL +L GL
Sbjct: 319 CDEGCENLKGLTKLKALSLGFNQITDACLIHLKDLVNLECLNLDSCKIGDEGLFHLKGLI 378
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LK LELSDT+VGS+GLRHLSGL NL+SINLSFT ++D L+K++GLSSLKSLNLD RQI
Sbjct: 379 QLKNLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKISGLSSLKSLNLDNRQI 438
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
TDTGLA+LT LTGLTHLDLFGARITDSG + R FKN++SLE+CGG +TDAGVK+IKDL
Sbjct: 439 TDTGLASLTGLTGLTHLDLFGARITDSGMSCFRFFKNIQSLEVCGGLITDAGVKNIKDLK 498
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
+LTLLNLSQN LTDKTLELISGLT LVSLNVSNSR+++ GL HLKPL+NLRSL+LESC+
Sbjct: 499 ALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSRVSNLGLHHLKPLQNLRSLSLESCR 558
Query: 481 VTANDIKRLQSRDLPNLVSFRPE 503
VTA+++ +L+ LPNL+S RPE
Sbjct: 559 VTASEMDKLRLVALPNLISVRPE 581
>gi|255553315|ref|XP_002517700.1| F-box/LRR-repeat protein, putative [Ricinus communis]
gi|223543332|gb|EEF44864.1| F-box/LRR-repeat protein, putative [Ricinus communis]
Length = 529
Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust.
Identities = 371/503 (73%), Positives = 408/503 (81%), Gaps = 49/503 (9%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQIFNELVYS+ L + ++EAFRDCALQDL LG+ PGVND WMDVI+SQG SLL
Sbjct: 76 MLPRDISQQIFNELVYSQRLNDATIEAFRDCALQDLHLGECPGVNDSWMDVISSQGISLL 135
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGSDVTDS GL +L+ +NL +L+F + I+
Sbjct: 136 SVDLSGSDVTDS-------------------------GLAYLKDCTNLQALNFNYCDQIS 170
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
G L N+ L+KLESLNIKWCNCITD+DMK LSGL
Sbjct: 171 DPG------------------------LSNISDLLKLESLNIKWCNCITDADMKYLSGLV 206
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
LK LQISCSKVTD GI+YLKGL KL LLNLEGCPVT ACLDSLSAL +L YLNLNRC L
Sbjct: 207 KLKGLQISCSKVTDVGISYLKGLHKLNLLNLEGCPVTVACLDSLSALAALLYLNLNRCHL 266
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
SDDGCE FSK+G LKVLNLGFN+I+D CLVHLKGLTNLESLNLDSC I DEGL NLTGL
Sbjct: 267 SDDGCEAFSKLGRLKVLNLGFNDISDACLVHLKGLTNLESLNLDSCRIDDEGLANLTGLR 326
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
+LKCL LSDT+VGSSGLRHLSGLTNLESINLSFT I+DG +RKL+GLSSLKSLNLDARQI
Sbjct: 327 HLKCLVLSDTEVGSSGLRHLSGLTNLESINLSFTMITDGGIRKLSGLSSLKSLNLDARQI 386
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
TD+GLAALT+LTGLTHLDLFGARITDSG YLRNFKNL+SLEICGGGLTDAG+++IKDLS
Sbjct: 387 TDSGLAALTNLTGLTHLDLFGARITDSGTHYLRNFKNLQSLEICGGGLTDAGIRNIKDLS 446
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
SL+LLNLSQNCNLTDK+LELISGLTGLVSLNVSNSRITSAGL+HLKPLKNL+SLTLESCK
Sbjct: 447 SLSLLNLSQNCNLTDKSLELISGLTGLVSLNVSNSRITSAGLQHLKPLKNLKSLTLESCK 506
Query: 481 VTANDIKRLQSRDLPNLVSFRPE 503
VTA DIK+LQS DLP LVSFRPE
Sbjct: 507 VTATDIKKLQSTDLPQLVSFRPE 529
>gi|226505324|ref|NP_001147302.1| regulatory subunit [Zea mays]
gi|195609698|gb|ACG26679.1| regulatory subunit [Zea mays]
gi|413937767|gb|AFW72318.1| regulatory subunit isoform 1 [Zea mays]
gi|413937768|gb|AFW72319.1| regulatory subunit isoform 2 [Zea mays]
Length = 582
Score = 612 bits (1578), Expect = e-172, Method: Compositional matrix adjust.
Identities = 340/503 (67%), Positives = 419/503 (83%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQQIFNELV S LTE SL+ FRDCALQD+ LG+YPGV D WM+V+ASQ SLL
Sbjct: 80 MLPRDLSQQIFNELVNSNRLTEASLQVFRDCALQDIGLGEYPGVKDAWMEVVASQKQSLL 139
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S S+V DSG+ L+DCS++QSL N+C QIS+ GL L GLSNL+SLSF+R+NA+T
Sbjct: 140 SVDISCSEVADSGIDLLRDCSSMQSLACNYCDQISESGLGVLSGLSNLSSLSFKRSNAVT 199
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+AFA L+NL+ LDLE C +IHGGL++LK L KLESLN+++CN I DSD+K L+ LT
Sbjct: 200 AEGMRAFANLVNLLNLDLEGCLKIHGGLIHLKDLTKLESLNMRYCNYIADSDIKYLTDLT 259
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQ+SC K+TD G++Y++GLQKLT LNLEGCPVTAACL+++S L SL LNLNRC +
Sbjct: 260 NLKDLQLSCCKITDLGVSYIRGLQKLTHLNLEGCPVTAACLEAISGLSSLVLLNLNRCGI 319
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
DDGCE F + LKVLNLGFN ITD CLVHLK L +LESLNLDSC IGD+GL +L GL
Sbjct: 320 YDDGCENFEGLKRLKVLNLGFNYITDACLVHLKELISLESLNLDSCKIGDDGLSHLKGLV 379
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
L+ LELSDT+VG++GL+HLSGL NL+SINLSFT ++D ++K++ L+SLKS+NLD RQI
Sbjct: 380 LLQSLELSDTEVGNNGLQHLSGLRNLQSINLSFTLVTDIGVKKISVLNSLKSVNLDNRQI 439
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
TD GLAAL SLT LTHLDLFGA ITD+G R FKNL SLE+CGG +TDAGVK+IKDL
Sbjct: 440 TDVGLAALISLTRLTHLDLFGACITDNGTNCFRYFKNLVSLEVCGGFVTDAGVKNIKDLK 499
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
+LTLLNLSQN NLTDKTLELISGLT L++LNVSNSR+++AGL+HL L NLRSL+L+S +
Sbjct: 500 ALTLLNLSQNANLTDKTLELISGLTALINLNVSNSRVSNAGLKHLNDLHNLRSLSLDSTR 559
Query: 481 VTANDIKRLQSRDLPNLVSFRPE 503
VTAN++++L++ L NL+S RPE
Sbjct: 560 VTANEMRKLRATVLHNLISMRPE 582
>gi|302796665|ref|XP_002980094.1| hypothetical protein SELMODRAFT_419616 [Selaginella moellendorffii]
gi|302822036|ref|XP_002992678.1| hypothetical protein SELMODRAFT_162512 [Selaginella moellendorffii]
gi|300139524|gb|EFJ06263.1| hypothetical protein SELMODRAFT_162512 [Selaginella moellendorffii]
gi|300152321|gb|EFJ18964.1| hypothetical protein SELMODRAFT_419616 [Selaginella moellendorffii]
Length = 578
Score = 567 bits (1460), Expect = e-159, Method: Compositional matrix adjust.
Identities = 296/500 (59%), Positives = 371/500 (74%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LPRD++Q+I NELV ++ L+ +AF DCA+QD+ LG YPGV+D WM+VI SQ LL+
Sbjct: 77 LPRDLTQKILNELVQTQALSRELFQAFEDCAIQDIYLGYYPGVDDSWMEVIGSQKFCLLA 136
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
VD SGS VTD G+ L+ C N++ + N C ISD L + G +NLTSLSF++N IT
Sbjct: 137 VDFSGSMVTDEGVQCLQICENVEIICMNECKYISDISLSYFTGFTNLTSLSFQKNKLITP 196
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
GM+ AGL NL LDLERC +IH GLV +KGL KLE LN+ WCNCI SDMK LSGLTN
Sbjct: 197 AGMRHLAGLPNLKHLDLERCPKIHDGLVYIKGLTKLEKLNLGWCNCIRSSDMKQLSGLTN 256
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L LQIS SKV D GI +LK L+KL +LN+EGCPVT AC+D+++ L SL LNL C +S
Sbjct: 257 LLELQISRSKVKDFGITFLKDLKKLEVLNMEGCPVTFACMDTIAGLTSLTTLNLKSCYIS 316
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
D GC K +G+LK LNL + ++D +V+LK L +L+ LNLDSC IGD+G+ N L N
Sbjct: 317 DFGCRKLEGLGNLKNLNLSYTNVSDAGMVYLKNLKSLQFLNLDSCKIGDQGVQNFKNLVN 376
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
LK L+LSD+ +G+ L L+GL+ LES+N+S T ++D L K++GL+SLKSLN+D+RQIT
Sbjct: 377 LKSLDLSDSLIGNHALNFLTGLSKLESLNISSTMVTDMGLHKISGLTSLKSLNIDSRQIT 436
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421
DTGL ALTSLT LTHLDLF ARITD G LR+FK L+SLE+CGGG+TD GVK +KDL+
Sbjct: 437 DTGLMALTSLTNLTHLDLFSARITDYGIGSLRHFKKLQSLEVCGGGITDVGVKSLKDLTD 496
Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
LT LNLSQN LTD+ LE +SGLT LVSLNV NS +T+AGL+HL PLKNL SL L+SCKV
Sbjct: 497 LTYLNLSQNGQLTDQALEALSGLTKLVSLNVGNSSVTNAGLQHLLPLKNLTSLALQSCKV 556
Query: 482 TANDIKRLQSRDLPNLVSFR 501
T I++LQ+ LPNLV R
Sbjct: 557 TLWAIQKLQASSLPNLVIVR 576
>gi|70663921|emb|CAE02935.3| OSJNBa0014K14.7 [Oryza sativa Japonica Group]
Length = 557
Score = 565 bits (1457), Expect = e-158, Method: Compositional matrix adjust.
Identities = 307/505 (60%), Positives = 373/505 (73%), Gaps = 28/505 (5%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQ+FNELV LTE L AFRDCALQD+CL YPGV D WM+V ASQG SLL
Sbjct: 79 LLPRDLSQQVFNELVEWNILTEELLGAFRDCALQDICLADYPGVRDAWMEVAASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S SDVTD GL LKDC NLQSL N+C QIS+ GL+ L GLSN+TSLSF++ +A+T
Sbjct: 139 SVDISCSDVTDGGLNQLKDCINLQSLSCNYCDQISEHGLKTLSGLSNVTSLSFKKCSAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA ++NL LDLERC +IHGGLV+LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANMVNLGSLDLERCPKIHGGLVHLKGLRKLEKLNLRYCNGITDSDMKHLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+SC K++D G++YL+GL KL LNLEGC VTAACL+ +S L SL LNL+RC +
Sbjct: 259 NLRELQLSCCKISDLGVSYLRGLSKLAHLNLEGCAVTAACLEVISGLASLVLLNLSRCGV 318
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D+GCE + LKVLNLGFN ITD CLVHLK L NLE LNLDSC IGDEGL +L
Sbjct: 319 YDEGCEHLEGLVKLKVLNLGFNYITDACLVHLKELINLECLNLDSCKIGDEGLAHLK--- 375
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
+ H L++ N + + + +KL + + + +
Sbjct: 376 ----------------VFH----KTLKAENHTISLMQTSETKKLG---TFRHRSWEQWTS 412
Query: 361 TDTGLAALTS--LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
+ + L+S LTGLTHLDLFGARITD+G L+ FKNL+SLE+CGG +TDAGVK+IKD
Sbjct: 413 SSLWMVFLSSQGLTGLTHLDLFGARITDAGTNCLKYFKNLQSLEVCGGLITDAGVKNIKD 472
Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 478
L +LTLLNLSQN NLTDK+LELIS LT LVSLNVSNSR++++GL HLKPL+NLRSL+LES
Sbjct: 473 LKALTLLNLSQNGNLTDKSLELISRLTALVSLNVSNSRVSNSGLHHLKPLQNLRSLSLES 532
Query: 479 CKVTANDIKRLQSRDLPNLVSFRPE 503
CKVTA +IK+LQ LPNLVS RPE
Sbjct: 533 CKVTAIEIKKLQLAALPNLVSVRPE 557
>gi|168012567|ref|XP_001758973.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689672|gb|EDQ76042.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 584
Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust.
Identities = 290/502 (57%), Positives = 373/502 (74%), Gaps = 2/502 (0%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
+PRD+ Q + +ELV + L+ +LE F DC+LQD+ L YPGV D W+ VI SQG SLL+
Sbjct: 81 VPRDLIQLVLDELVRRQLLSPTTLELFSDCSLQDVLLPDYPGVEDSWLQVIGSQGESLLA 140
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+D+S S VTD GL L+ C+NLQSL N C I+D GL L GLSNLT+LS R NN ITA
Sbjct: 141 LDISSSTVTDEGLSFLESCTNLQSLILNACESIADEGLTSLSGLSNLTTLSLRSNNMITA 200
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
GM+ F L++L LDL+RC I GG V LKGL LE LN+ WC + +SD+K LSGL N
Sbjct: 201 AGMQNFTHLVSLKNLDLQRCPSIQGGFVYLKGLTTLEKLNVGWCIGVRNSDIKHLSGLVN 260
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQL 240
LK LQIS SKV+DSG+A L GL KL L++EGC VT+ ++S+ L +++LN+N C L
Sbjct: 261 LKELQISRSKVSDSGLASLTGLTKLRSLSMEGCQAVTSKGMESIGGLTGVWHLNVNSCFL 320
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D G +K + +L+ LN+G+N +++ + LKGLTNLE LNLDSC IGD G+ N+ GL
Sbjct: 321 HDSGFQKLEGLINLRTLNMGYNNVSNSGMGFLKGLTNLERLNLDSCKIGDHGIENVKGLV 380
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQ 359
NLK L+LSDT++ S+GLR L+GL NLES+NLSFT GI+D LR +A ++SL SLNLD++Q
Sbjct: 381 NLKMLDLSDTEIESAGLRFLTGLKNLESLNLSFTGGIADSGLRTIATITSLTSLNLDSKQ 440
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
ITDTGLAALT LTGL LDLFGARITD G A LR+FK L++LE+CGGG+TDAGV+ IKDL
Sbjct: 441 ITDTGLAALTGLTGLKTLDLFGARITDYGMACLRHFKKLQTLELCGGGITDAGVRSIKDL 500
Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 479
+SLT LNLSQN LTD +L+ +SG+ LVSLN++NSR+T+AGL+HL+PL NL SL L+ C
Sbjct: 501 TSLTSLNLSQNMRLTDNSLQYLSGMKNLVSLNLANSRVTNAGLQHLRPLTNLTSLALQDC 560
Query: 480 KVTANDIKRLQSRDLPNLVSFR 501
KVT ++RLQ+ LP+L R
Sbjct: 561 KVTLPAVERLQATYLPSLTVIR 582
>gi|168057635|ref|XP_001780819.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667754|gb|EDQ54376.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 564
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 286/497 (57%), Positives = 373/497 (75%), Gaps = 1/497 (0%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
+PRD+ QQ+ N+LV + L+ V+LE F DCALQD+ L YPGV D W+D+I SQG SLL+
Sbjct: 62 VPRDLIQQVLNDLVRKQLLSPVTLELFSDCALQDVLLADYPGVEDFWLDIIGSQGESLLA 121
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+D+SGS VTD GL L+ C+NLQ+L N C ISD GL L GLSNLT+LS R +N ITA
Sbjct: 122 LDISGSPVTDDGLACLQSCTNLQTLSLNSCDHISDEGLSVLSGLSNLTTLSLRSSNLITA 181
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
GM+ F L++L LDLERC IHGG V L+GL LE LN+ WC + ++D+ L+G+ N
Sbjct: 182 AGMRNFTNLVSLKNLDLERCPLIHGGFVYLRGLTTLEKLNVGWCIGVRNADITHLAGIVN 241
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
LK LQIS SKV DSG+A LKG+ L L++EGCP+TA + +++ L +L +LN+N C L
Sbjct: 242 LKELQISRSKVNDSGVASLKGMTNLRSLSMEGCPITAQSMKTIAGLTTLCHLNINSCYLP 301
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
D GC+K + +L+ LNLG+NE+TD +V LKGLTNLE LNLDSC +GDEG+ ++ GL N
Sbjct: 302 DSGCQKLEGLINLRTLNLGYNELTDSGMVFLKGLTNLERLNLDSCKVGDEGIKHVKGLLN 361
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQI 360
L+ L+LSD++VG+ GLR LSGL LE +NLSFT G++D L +A ++SL SLNLD++QI
Sbjct: 362 LRMLDLSDSEVGNVGLRFLSGLKKLEILNLSFTGGVTDIGLSTIATITSLTSLNLDSKQI 421
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
TDTGLAALT LTGL +LDLFGA+ITD G A LR+FKNL+SLE+CGGG+TD GV IKDL+
Sbjct: 422 TDTGLAALTGLTGLKNLDLFGAKITDYGMARLRHFKNLQSLELCGGGITDVGVSSIKDLT 481
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
LT LNLS N LTD++L+ +SG+ LVSLNV+NS++T+AGL+HL+PL L SL L+ CK
Sbjct: 482 LLTSLNLSHNLRLTDRSLQYLSGMENLVSLNVANSKVTNAGLQHLRPLTKLTSLALQGCK 541
Query: 481 VTANDIKRLQSRDLPNL 497
VT + L++ LPNL
Sbjct: 542 VTRTAVDHLKATSLPNL 558
>gi|356519278|ref|XP_003528300.1| PREDICTED: F-box/LRR-repeat protein 14-like isoform 2 [Glycine max]
Length = 529
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 298/503 (59%), Positives = 352/503 (69%), Gaps = 50/503 (9%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQ IFN LVYSR LT SLEAFRDCALQDL LG+Y GVND WM VI+SQGSSLL
Sbjct: 75 MLPRDISQLIFNNLVYSRRLTSASLEAFRDCALQDLYLGEYDGVNDNWMGVISSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGSDVTD GL +LKDC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSGSDVTDFGLTYLKDCESLISLNLNYCDQISDRGLECISGLSNLTSLSFRRNDSIS 194
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AQGM AF+GL+NLVKLDLERC IHGGLV+L+GL KLESLN+KWCNCITD DMKPLS L
Sbjct: 195 AQGMSAFSGLVNLVKLDLERCPGIHGGLVHLRGLTKLESLNLKWCNCITDYDMKPLSELA 254
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+LKSL+IS SKVTD GI++LKGLQKL LLNLEGC VTAACLDSL+ L +L LNLNRC L
Sbjct: 255 SLKSLEISSSKVTDFGISFLKGLQKLALLNLEGCLVTAACLDSLAELPALSNLNLNRCNL 314
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
SD+GC+K S++ +LKVLNLGFN ITD CLVHLKGLT LESLNLDSC IGDEGLVNL GL
Sbjct: 315 SDNGCKKISRLENLKVLNLGFNVITDACLVHLKGLTKLESLNLDSCKIGDEGLVNLAGLE 374
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
L CLELSDT+VGS+GL HLSGLT L ++L I+D L +L+SL + +
Sbjct: 375 QLNCLELSDTEVGSNGLHHLSGLTGLTDLDLFGARITDFGTNYLKKFKNLRSLEICGGVL 434
Query: 361 TDTGLAALTSLTGLTHLDLF-GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
TD G+ + L+ L L+L + +TD + L SL + +T+AG++H+K L
Sbjct: 435 TDAGVKNIKELSSLVCLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRITNAGLQHLKTL 494
Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 479
+L L L ++C +T
Sbjct: 495 KNLRSLTL-ESCKVT--------------------------------------------- 508
Query: 480 KVTANDIKRLQSRDLPNLVSFRP 502
ANDIK+L+S LPNLVSFRP
Sbjct: 509 ---ANDIKKLKSIYLPNLVSFRP 528
>gi|14423508|gb|AAK62436.1|AF386991_1 Unknown protein [Arabidopsis thaliana]
gi|20148357|gb|AAM10069.1| unknown protein [Arabidopsis thaliana]
Length = 332
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 261/332 (78%), Positives = 297/332 (89%), Gaps = 1/332 (0%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLF 231
M+PLS LTNL+SLQI CSK+TD GI+YLKGL KL LLNLEGC VTAACLD+L+AL L
Sbjct: 1 MEPLSVLTNLRSLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLM 60
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
YLNLNRC SD GCEKFS + +LK+LNLG N IT+ CLVHLKGLT LESLNLDSC IGDE
Sbjct: 61 YLNLNRCNFSDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDE 120
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
GLV+L+G+ LK LELSDT+VGS+GLRHLSGL+NLESINLSFT ++D LRKL+GL+SL+
Sbjct: 121 GLVHLSGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLR 180
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
+LNLDAR +TD GL+ALTSLTGLTHLDLFGARITDSG +LRN K L+SLEICGGGLTD
Sbjct: 181 TLNLDARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDT 240
Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 471
GVK+IKDLSSLTLLNLSQN NLTDKTLELISGLTGLVSLNVSNSR++S+GLRHLKPLKNL
Sbjct: 241 GVKNIKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNL 300
Query: 472 RSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 503
RSLTLESCK++ANDI++LQ+ DLPNLV+FRPE
Sbjct: 301 RSLTLESCKLSANDIRKLQATDLPNLVNFRPE 332
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 108/324 (33%), Positives = 167/324 (51%), Gaps = 27/324 (8%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+NL+SL C +I+D G+ +L+GL+ L L+ +TA + L L+ L+L R
Sbjct: 8 TNLRSLQI-CCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMYLNLNR 66
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
C +DS + S L NLK L + + +T+S + +L
Sbjct: 67 CN-------------------------FSDSGCEKFSDLINLKILNLGMNNITNSCLVHL 101
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
KGL KL LNL+ C + L LS + L L L+ ++ +G S + +L+ +NL
Sbjct: 102 KGLTKLESLNLDSCRIGDEGLVHLSGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLS 161
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
F +TD L L GLT+L +LNLD+ + D GL LT L L L+L ++ SG HL
Sbjct: 162 FTVVTDSGLRKLSGLTSLRTLNLDARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHL 221
Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDL 379
L L+S+ + G++D ++ + LSSL LNL +TD L ++ LTGL L++
Sbjct: 222 RNLKKLQSLEICGGGLTDTGVKNIKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNV 281
Query: 380 FGARITDSGAAYLRNFKNLRSLEI 403
+R++ SG +L+ KNLRSL +
Sbjct: 282 SNSRVSSSGLRHLKPLKNLRSLTL 305
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 108/313 (34%), Positives = 160/313 (51%), Gaps = 27/313 (8%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L S+ + S +TD G+ +LK + L L+ C ++ L+ L L+ L L+ R
Sbjct: 8 TNLRSLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMYLNLNRC 67
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N + G + F+ LINL L+L + LV+LKGL KLESLN+ C I D + L
Sbjct: 68 N-FSDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCR-IGDEGLVHL 125
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
SG+ LKSL++S ++V +G+ +L GL L +NL VT + L LS L SL LNL+
Sbjct: 126 SGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTLNLD 185
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN- 295
++D G + + L L+L ITD HL+ L L+SL + G+ D G+ N
Sbjct: 186 ARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNI 245
Query: 296 ------------------------LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
++GL L L +S+++V SSGLRHL L NL S+ L
Sbjct: 246 KDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRSLTL 305
Query: 332 SFTGISDGSLRKL 344
+S +RKL
Sbjct: 306 ESCKLSANDIRKL 318
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 101/192 (52%), Gaps = 26/192 (13%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S++LS ++V +GL HL SNL+S++ +F + ++D GL L GL++L +L+ +
Sbjct: 131 LKSLELSDTEVGSNGLRHLSGLSNLESINLSFTV-VTDSGLRKLSGLTSLRTLNLDARH- 188
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL-------------NIK-- 163
+T G+ A L L LDL G +L+ L KL+SL NIK
Sbjct: 189 VTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNIKDL 248
Query: 164 ---------WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
+ +TD ++ +SGLT L SL +S S+V+ SG+ +LK L+ L L LE C
Sbjct: 249 SSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRSLTLESC 308
Query: 215 PVTAACLDSLSA 226
++A + L A
Sbjct: 309 KLSANDIRKLQA 320
>gi|217074604|gb|ACJ85662.1| unknown [Medicago truncatula]
Length = 331
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 238/331 (71%), Positives = 278/331 (83%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
MK +SG NLK LQIS S +TD GI+YL+GLQKL+ LN+EGC +TAAC + +SAL +L
Sbjct: 1 MKAISGFINLKELQISNSSITDLGISYLRGLQKLSTLNVEGCSITAACFEYISALAALAC 60
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
LNLNRC LSDDG EKFS + LK L+L FN+ITD CLVHLKGLT LE LNLDSC IGDEG
Sbjct: 61 LNLNRCGLSDDGFEKFSGLTGLKRLSLAFNKITDACLVHLKGLTKLEYLNLDSCQIGDEG 120
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
LVNLTGL LK L LSDT+VG+SG+R++SGL LE +NLSFT ++D L++L GL++LKS
Sbjct: 121 LVNLTGLTLLKSLVLSDTEVGNSGIRYISGLNKLEDLNLSFTSVTDNGLKRLLGLTNLKS 180
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
LNLDARQITD GLA LTSL+GL LDLFGARITDSG YLR+FKNL+SLEICGG LTDAG
Sbjct: 181 LNLDARQITDAGLANLTSLSGLITLDLFGARITDSGTTYLRSFKNLQSLEICGGLLTDAG 240
Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 472
VK+I+++ SLT LNLSQNC LTDKTLELISG+T L SLNVSNSR+T+ GLR+LKPLKNLR
Sbjct: 241 VKNIREIVSLTQLNLSQNCKLTDKTLELISGMTALRSLNVSNSRVTNEGLRYLKPLKNLR 300
Query: 473 SLTLESCKVTANDIKRLQSRDLPNLVSFRPE 503
+L+LESCKV A DIK+L S DLPNL+SFRPE
Sbjct: 301 TLSLESCKVNAADIKKLHSTDLPNLISFRPE 331
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 112/325 (34%), Positives = 170/325 (52%), Gaps = 26/325 (8%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC---------------- 167
MKA +G INL +L + + G+ L+GL KL +LN++ C+
Sbjct: 1 MKAISGFINLKELQISNSSITDLGISYLRGLQKLSTLNVEGCSITAACFEYISALAALAC 60
Query: 168 -------ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
++D + SGLT LK L ++ +K+TD+ + +LKGL KL LNL+ C +
Sbjct: 61 LNLNRCGLSDDGFEKFSGLTGLKRLSLAFNKITDACLVHLKGLTKLEYLNLDSCQIGDEG 120
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
L +L+ L L L L+ ++ + G S + L+ LNL F +TD L L GLTNL+S
Sbjct: 121 LVNLTGLTLLKSLVLSDTEVGNSGIRYISGLNKLEDLNLSFTSVTDNGLKRLLGLTNLKS 180
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
LNLD+ I D GL NLT L L L+L ++ SG +L NL+S+ + ++D
Sbjct: 181 LNLDARQITDAGLANLTSLSGLITLDLFGARITDSGTTYLRSFKNLQSLEICGGLLTDAG 240
Query: 341 LRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
++ + + SL LNL ++TD L ++ +T L L++ +R+T+ G YL+ KNLR
Sbjct: 241 VKNIREIVSLTQLNLSQNCKLTDKTLELISGMTALRSLNVSNSRVTNEGLRYLKPLKNLR 300
Query: 400 --SLEICGGGLTDAGVKHIKDLSSL 422
SLE C D H DL +L
Sbjct: 301 TLSLESCKVNAADIKKLHSTDLPNL 325
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 109/326 (33%), Positives = 165/326 (50%), Gaps = 38/326 (11%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA---------- 121
SG I+LK+ S I+D G+ +LRGL L++L+ +ITA
Sbjct: 5 SGFINLKELQISNS-------SITDLGISYLRGLQKLSTLNV-EGCSITAACFEYISALA 56
Query: 122 --------------QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 167
G + F+GL L +L L LV+LKGL KLE LN+ C
Sbjct: 57 ALACLNLNRCGLSDDGFEKFSGLTGLKRLSLAFNKITDACLVHLKGLTKLEYLNLDSCQ- 115
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I D + L+GLT LKSL +S ++V +SGI Y+ GL KL LNL VT L L L
Sbjct: 116 IGDEGLVNLTGLTLLKSLVLSDTEVGNSGIRYISGLNKLEDLNLSFTSVTDNGLKRLLGL 175
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
+L LNL+ Q++D G + + L L+L ITD +L+ NL+SL + CG
Sbjct: 176 TNLKSLNLDARQITDAGLANLTSLSGLITLDLFGARITDSGTTYLRSFKNLQSLEI--CG 233
Query: 288 --IGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
+ D G+ N+ + +L L LS ++ L +SG+T L S+N+S + +++ LR L
Sbjct: 234 GLLTDAGVKNIREIVSLTQLNLSQNCKLTDKTLELISGMTALRSLNVSNSRVTNEGLRYL 293
Query: 345 AGLSSLKSLNLDARQITDTGLAALTS 370
L +L++L+L++ ++ + L S
Sbjct: 294 KPLKNLRTLSLESCKVNAADIKKLHS 319
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 133/228 (58%), Gaps = 4/228 (1%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+ L+ + +TD+ L+HLK + L+ L+ + C QI D GL +L GL+ L SL + +
Sbjct: 85 LSLAFNKITDACLVHLKGLTKLEYLNLDSC-QIGDEGLVNLTGLTLLKSLVL-SDTEVGN 142
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
G++ +GL L L+L + GL L GL L+SLN+ ITD+ + L+ L+
Sbjct: 143 SGIRYISGLNKLEDLNLSFTSVTDNGLKRLLGLTNLKSLNLD-ARQITDAGLANLTSLSG 201
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR-CQL 240
L +L + +++TDSG YL+ + L L + G +T A + ++ + SL LNL++ C+L
Sbjct: 202 LITLDLFGARITDSGTTYLRSFKNLQSLEICGGLLTDAGVKNIREIVSLTQLNLSQNCKL 261
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
+D E S + +L+ LN+ + +T+E L +LK L NL +L+L+SC +
Sbjct: 262 TDKTLELISGMTALRSLNVSNSRVTNEGLRYLKPLKNLRTLSLESCKV 309
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 78/132 (59%), Gaps = 4/132 (3%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L+++DL G+ +TDSG +L+ NLQSL+ + ++D G++++R + +LT L+ +N
Sbjct: 200 SGLITLDLFGARITDSGTTYLRSFKNLQSLEICGGL-LTDAGVKNIREIVSLTQLNLSQN 258
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T + ++ +G+ L L++ + GL LK L L +L+++ C + +D+K L
Sbjct: 259 CKLTDKTLELISGMTALRSLNVSNSRVTNEGLRYLKPLKNLRTLSLESCK-VNAADIKKL 317
Query: 177 --SGLTNLKSLQ 186
+ L NL S +
Sbjct: 318 HSTDLPNLISFR 329
>gi|414586494|tpg|DAA37065.1| TPA: hypothetical protein ZEAMMB73_067914 [Zea mays]
Length = 400
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 213/322 (66%), Positives = 255/322 (79%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQIFNELV CLTE SL AFRDC LQD+CLG YPGV D WM+V+ASQG SLL
Sbjct: 79 LLPRDLSQQIFNELVECGCLTEASLGAFRDCDLQDICLGDYPGVTDAWMEVVASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTDSG LKDCS++QSL ++C QIS+ GL+ L G SNLTSLS ++ A+T
Sbjct: 139 SVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCAAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA L+NLV LDLERC +I+GGL++LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+S K++ G++YL+GL KL LNLEGC VTA CL+ +S L SL LNL+RC +
Sbjct: 259 NLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSRCGI 318
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D+GCE + LK L+LGFN+ITD CL+HLK L NLE LNLDSC IGDEGL +L GL
Sbjct: 319 CDEGCENLKGLTKLKALSLGFNQITDACLIHLKDLVNLECLNLDSCKIGDEGLFHLKGLI 378
Query: 301 NLKCLELSDTQVGSSGLRHLSG 322
LK LELSDT+VGS+GLRHLSG
Sbjct: 379 QLKNLELSDTEVGSNGLRHLSG 400
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 96/286 (33%), Positives = 130/286 (45%), Gaps = 24/286 (8%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CS 190
+L+ +DL G LK ++SL +C+ I++ +K LSG +NL SL I C+
Sbjct: 136 SLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCA 195
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
VT G L L L+LE CP L L L L LNL C
Sbjct: 196 AVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYC------------ 243
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
N ITD + +L LTNL L L SC I G+ L GL L L L
Sbjct: 244 -----------NGITDSDMKYLSDLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGC 292
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
V + L +S L +L +NLS GI D L GL+ LK+L+L QITD L L
Sbjct: 293 AVTAVCLEVISELASLVLLNLSRCGICDEGCENLKGLTKLKALSLGFNQITDACLIHLKD 352
Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
L L L+L +I D G +L+ L++LE+ + G++H+
Sbjct: 353 LVNLECLNLDSCKIGDEGLFHLKGLIQLKNLELSDTEVGSNGLRHL 398
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 99/302 (32%), Positives = 154/302 (50%), Gaps = 29/302 (9%)
Query: 168 ITDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLS 225
+TD+ M+ ++ +L S+ +SCS VTDSG LK + L + C ++ L +LS
Sbjct: 122 VTDAWMEVVASQGQSLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLS 181
Query: 226 ALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
+L L++ +C ++ +G + F+ + +L L+L + L+HLKGL LE LNL
Sbjct: 182 GFSNLTSLSIKKCAAVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLR 241
Query: 285 SC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
C GI D + L+ L NL+ L+LS ++ + G+ +L GL L +NL ++ L
Sbjct: 242 YCNGITDSDMKYLSDLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEV 301
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
++ L+SL LNL I D G L LT L L L +IT
Sbjct: 302 ISELASLVLLNLSRCGICDEGCENLKGLTKLKALSLGFNQIT------------------ 343
Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
DA + H+KDL +L LNL +C + D+ L + GL L +L +S++ + S GLR
Sbjct: 344 ------DACLIHLKDLVNLECLNL-DSCKIGDEGLFHLKGLIQLKNLELSDTEVGSNGLR 396
Query: 464 HL 465
HL
Sbjct: 397 HL 398
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 159/309 (51%), Gaps = 9/309 (2%)
Query: 187 ISCSKVTDSGIAYLKG--LQKLTLLNLEGCPVTAACLDSLSALG-SLFYLNLNRCQLSDD 243
+ C +T++ + + LQ + L + G VT A ++ +++ G SL ++L+ ++D
Sbjct: 93 VECGCLTEASLGAFRDCDLQDICLGDYPG--VTDAWMEVVASQGQSLLSVDLSCSDVTDS 150
Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN 301
G S++ L + ++I++ L L G +NL SL++ C + EG L N
Sbjct: 151 GFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCAAVTAEGAKAFANLVN 210
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQI 360
L L+L + GL HL GL LE +NL + GI+D ++ L+ L++L+ L L + +I
Sbjct: 211 LVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLTNLRELQLSSCKI 270
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
+ G++ L L L HL+L G +T + +L L + G+ D G +++K L+
Sbjct: 271 SAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSRCGICDEGCENLKGLT 330
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
L L+L N +TD L + L L LN+ + +I GL HLK L L++L L +
Sbjct: 331 KLKALSLGFN-QITDACLIHLKDLVNLECLNLDSCKIGDEGLFHLKGLIQLKNLELSDTE 389
Query: 481 VTANDIKRL 489
V +N ++ L
Sbjct: 390 VGSNGLRHL 398
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 89/193 (46%), Gaps = 28/193 (14%)
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFG-A 382
+L S++LS + ++D L SS++SL D QI++ GL L+ + LT L + A
Sbjct: 136 SLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCA 195
Query: 383 RITDSGAAYLRNFKNL------RSLEICGG-------------------GLTDAGVKHIK 417
+T GA N NL R +I GG G+TD+ +K++
Sbjct: 196 AVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLS 255
Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 477
DL++L L LS +C ++ + + GL L LN+ +T+ L + L +L L L
Sbjct: 256 DLTNLRELQLS-SCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLS 314
Query: 478 SCKVTANDIKRLQ 490
C + + L+
Sbjct: 315 RCGICDEGCENLK 327
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 5/162 (3%)
Query: 333 FTGISDGSLRKLAGL-SSLKSLNLDARQITDTGLAALTSLTGLTHLDL-FGARITDSGAA 390
+ G++D + +A SL S++L +TD+G L + + L + +I++ G
Sbjct: 119 YPGVTDAWMEVVASQGQSLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLK 178
Query: 391 YLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
L F NL SL I C +T G K +L +L L+L + + + L
Sbjct: 179 TLSGFSNLTSLSIKKCAA-VTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEK 237
Query: 449 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 490
+ IT + +++L L NLR L L SCK++A + L+
Sbjct: 238 LNLRYCNGITDSDMKYLSDLTNLRELQLSSCKISAFGVSYLR 279
>gi|413937766|gb|AFW72317.1| hypothetical protein ZEAMMB73_434085 [Zea mays]
Length = 403
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 218/324 (67%), Positives = 268/324 (82%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQQIFNELV S LTE SL+ FRDCALQD+ LG+YPGV D WM+V+ASQ SLL
Sbjct: 80 MLPRDLSQQIFNELVNSNRLTEASLQVFRDCALQDIGLGEYPGVKDAWMEVVASQKQSLL 139
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S S+V DSG+ L+DCS++QSL N+C QIS+ GL L GLSNL+SLSF+R+NA+T
Sbjct: 140 SVDISCSEVADSGIDLLRDCSSMQSLACNYCDQISESGLGVLSGLSNLSSLSFKRSNAVT 199
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+AFA L+NL+ LDLE C +IHGGL++LK L KLESLN+++CN I DSD+K L+ LT
Sbjct: 200 AEGMRAFANLVNLLNLDLEGCLKIHGGLIHLKDLTKLESLNMRYCNYIADSDIKYLTDLT 259
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQ+SC K+TD G++Y++GLQKLT LNLEGCPVTAACL+++S L SL LNLNRC +
Sbjct: 260 NLKDLQLSCCKITDLGVSYIRGLQKLTHLNLEGCPVTAACLEAISGLSSLVLLNLNRCGI 319
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
DDGCE F + LKVLNLGFN ITD CLVHLK L +LESLNLDSC IGD+GL +L GL
Sbjct: 320 YDDGCENFEGLKRLKVLNLGFNYITDACLVHLKELISLESLNLDSCKIGDDGLSHLKGLV 379
Query: 301 NLKCLELSDTQVGSSGLRHLSGLT 324
L+ LELSDT+VG++GL+HLSGL+
Sbjct: 380 LLQSLELSDTEVGNNGLQHLSGLS 403
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
Query: 316 GLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
GL HL LT LES+N+ + I+D ++ L L++LK L L +ITD G++ + L L
Sbjct: 226 GLIHLKDLTKLESLNMRYCNYIADSDIKYLTDLTNLKDLQLSCCKITDLGVSYIRGLQKL 285
Query: 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
THL+L G +T + + +L L + G+ D G ++ + L L +LNL N +T
Sbjct: 286 THLNLEGCPVTAACLEAISGLSSLVLLNLNRCGIYDDGCENFEGLKRLKVLNLGFN-YIT 344
Query: 435 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
D L + L L SLN+ + +I GL HLK L L+SL L +V N ++ L
Sbjct: 345 DACLVHLKELISLESLNLDSCKIGDDGLSHLKGLVLLQSLELSDTEVGNNGLQHL 399
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 142/290 (48%), Gaps = 26/290 (8%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ 239
+L S+ ISCS+V DSGI L+ + L C ++ + L LS L +L L+ R
Sbjct: 137 SLLSVDISCSEVADSGIDLLRDCSSMQSLACNYCDQISESGLGVLSGLSNLSSLSFKRSN 196
Query: 240 -LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
++ +G F+ + +L L+L L+HLK LT LESLN+ C
Sbjct: 197 AVTAEGMRAFANLVNLLNLDLEGCLKIHGGLIHLKDLTKLESLNMRYC------------ 244
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
+ S +++L+ LTNL+ + LS I+D + + GL L LNL+
Sbjct: 245 -----------NYIADSDIKYLTDLTNLKDLQLSCCKITDLGVSYIRGLQKLTHLNLEGC 293
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
+T L A++ L+ L L+L I D G K L+ L + +TDA + H+K+
Sbjct: 294 PVTAACLEAISGLSSLVLLNLNRCGIYDDGCENFEGLKRLKVLNLGFNYITDACLVHLKE 353
Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 468
L SL LNL +C + D L + GL L SL +S++ + + GL+HL L
Sbjct: 354 LISLESLNL-DSCKIGDDGLSHLKGLVLLQSLELSDTEVGNNGLQHLSGL 402
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 85/153 (55%), Gaps = 2/153 (1%)
Query: 339 GSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
G L L L+ L+SLN+ I D+ + LT LT L L L +ITD G +Y+R +
Sbjct: 225 GGLIHLKDLTKLESLNMRYCNYIADSDIKYLTDLTNLKDLQLSCCKITDLGVSYIRGLQK 284
Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
L L + G +T A ++ I LSSL LLNL++ C + D E GL L LN+ + I
Sbjct: 285 LTHLNLEGCPVTAACLEAISGLSSLVLLNLNR-CGIYDDGCENFEGLKRLKVLNLGFNYI 343
Query: 458 TSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 490
T A L HLK L +L SL L+SCK+ + + L+
Sbjct: 344 TDACLVHLKELISLESLNLDSCKIGDDGLSHLK 376
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 88/161 (54%), Gaps = 2/161 (1%)
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR 383
+L S+++S + ++D + L SS++SL + QI+++GL L+ L+ L+ L +
Sbjct: 137 SLLSVDISCSEVADSGIDLLRDCSSMQSLACNYCDQISESGLGVLSGLSNLSSLSFKRSN 196
Query: 384 -ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
+T G N NL +L++ G G+ H+KDL+ L LN+ + D ++ ++
Sbjct: 197 AVTAEGMRAFANLVNLLNLDLEGCLKIHGGLIHLKDLTKLESLNMRYCNYIADSDIKYLT 256
Query: 443 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 483
LT L L +S +IT G+ +++ L+ L L LE C VTA
Sbjct: 257 DLTNLKDLQLSCCKITDLGVSYIRGLQKLTHLNLEGCPVTA 297
>gi|255088361|ref|XP_002506103.1| predicted protein [Micromonas sp. RCC299]
gi|226521374|gb|ACO67361.1| predicted protein [Micromonas sp. RCC299]
Length = 610
Score = 341 bits (875), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 198/495 (40%), Positives = 294/495 (59%), Gaps = 3/495 (0%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LP D+SQ++F +LV +R LT F C L + L YPG+ D W+ V+A+ +L
Sbjct: 100 VLPSDLSQRVFEDLVQTRRLTARVTGDFIGCHLTEANLRSYPGLTDDWLAVLATSAPNLS 159
Query: 61 SVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
S++LSG + +T G L C L+SLD + C ++D L + +S L L+ + I
Sbjct: 160 SINLSGCAALTPDGFNALAACVELESLDVSECPGVNDNALAAVASMSRLRRLACAGCDGI 219
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
T G++ +G L ++LERC + GLV L GL +LE L+ WCN + +D+ L L
Sbjct: 220 TGAGLRYVSGATKLRCVNLERCNGLTNGLVYLSGLTELERLDAGWCNHVDSNDVTSLRSL 279
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
LK L ++ +KV D G+A + L L LNL GC +T L L +L L+L C+
Sbjct: 280 KKLKHLNLARTKVDDQGVATIGSLSALETLNLAGCRITDGACFLLGGLTALKELSLEWCR 339
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
+ D G + + + L+VLNLG++ +TDE + HL L L ++LDSC +GD+ L
Sbjct: 340 VGDGGVRRLASLAKLEVLNLGYSSVTDEGVQHLAPLVKLREIDLDSCQVGDDACKALAEW 399
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
NL+ + LSDT VG+ GL+ +S LT L +NLS++ +SD + L +S++SL+LD R
Sbjct: 400 PNLEDVNLSDTAVGNLGLKRISKLTRLRRVNLSYSNVSDDGVMYLENAASIRSLSLDTRM 459
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
+TD GL L L + LDLFGARITD GA +LR+ L++LE+CGGG+TDAGVKHI D
Sbjct: 460 VTDEGLGYLAKLKDIEELDLFGARITDEGAKHLRHMPRLKTLELCGGGITDAGVKHIGDA 519
Query: 420 -SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 478
LTLLNL QN ++D + + L L SLN+ SRI++ G+ L L NL +L L+
Sbjct: 520 CRELTLLNLGQNFRISDAAVPFLLQLHKLGSLNLQYSRISNEGVTQLSQLSNLTTLALKG 579
Query: 479 C-KVTANDIKRLQSR 492
C +V+ ++ L+++
Sbjct: 580 CNRVSQAAVEELRAK 594
>gi|414586492|tpg|DAA37063.1| TPA: hypothetical protein ZEAMMB73_067914 [Zea mays]
Length = 356
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 176/273 (64%), Positives = 215/273 (78%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQIFNELV CLTE SL AFRDC LQD+CLG YPGV D WM+V+ASQG SLL
Sbjct: 79 LLPRDLSQQIFNELVECGCLTEASLGAFRDCDLQDICLGDYPGVTDAWMEVVASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTDSG LKDCS++QSL ++C QIS+ GL+ L G SNLTSLS ++ A+T
Sbjct: 139 SVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCAAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA L+NLV LDLERC +I+GGL++LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+S K++ G++YL+GL KL LNLEGC VTA CL+ +S L SL LNL+RC +
Sbjct: 259 NLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSRCGI 318
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
D+GCE + LK L+LGFN+ITD CL+HLK
Sbjct: 319 CDEGCENLKGLTKLKALSLGFNQITDACLIHLK 351
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 112/219 (51%), Gaps = 4/219 (1%)
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-T 310
SL ++L +++TD LK ++++SL D C I + GL L+G NL L +
Sbjct: 136 SLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCA 195
Query: 311 QVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 369
V + G + + L NL +++L I+ G + K ITD+ + L+
Sbjct: 196 AVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLS 255
Query: 370 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 429
LT L L L +I+ G +YLR L L + G +T ++ I +L+SL LLNLS+
Sbjct: 256 DLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSR 315
Query: 430 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 468
C + D+ E + GLT L +L++ ++IT A L HLK +
Sbjct: 316 -CGICDEGCENLKGLTKLKALSLGFNQITDACLIHLKVM 353
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 106/238 (44%), Gaps = 24/238 (10%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CS 190
+L+ +DL G LK ++SL +C+ I++ +K LSG +NL SL I C+
Sbjct: 136 SLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCA 195
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
VT G L L L+LE CP L L L L LNL C
Sbjct: 196 AVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYC------------ 243
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
N ITD + +L LTNL L L SC I G+ L GL L L L
Sbjct: 244 -----------NGITDSDMKYLSDLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGC 292
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
V + L +S L +L +NLS GI D L GL+ LK+L+L QITD L L
Sbjct: 293 AVTAVCLEVISELASLVLLNLSRCGICDEGCENLKGLTKLKALSLGFNQITDACLIHL 350
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 117/253 (46%), Gaps = 26/253 (10%)
Query: 168 ITDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLS 225
+TD+ M+ ++ +L S+ +SCS VTDSG LK + L + C ++ L +LS
Sbjct: 122 VTDAWMEVVASQGQSLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLS 181
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
+L L++ +C +T E L NL +L+L+
Sbjct: 182 GFSNLTSLSIKKCA-----------------------AVTAEGAKAFANLVNLVNLDLER 218
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
C + GL++L GL L+ L L + S +++LS LTNL + LS IS + L
Sbjct: 219 CPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLTNLRELQLSSCKISAFGVSYL 278
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
GL L LNL+ +T L ++ L L L+L I D G L+ L++L +
Sbjct: 279 RGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSRCGICDEGCENLKGLTKLKALSLG 338
Query: 405 GGGLTDAGVKHIK 417
+TDA + H+K
Sbjct: 339 FNQITDACLIHLK 351
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 132/258 (51%), Gaps = 9/258 (3%)
Query: 187 ISCSKVTDSGIAYLKG--LQKLTLLNLEGCPVTAACLDSLSALG-SLFYLNLNRCQLSDD 243
+ C +T++ + + LQ + L + G VT A ++ +++ G SL ++L+ ++D
Sbjct: 93 VECGCLTEASLGAFRDCDLQDICLGDYPG--VTDAWMEVVASQGQSLLSVDLSCSDVTDS 150
Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN 301
G S++ L + ++I++ L L G +NL SL++ C + EG L N
Sbjct: 151 GFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCAAVTAEGAKAFANLVN 210
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQI 360
L L+L + GL HL GL LE +NL + GI+D ++ L+ L++L+ L L + +I
Sbjct: 211 LVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLTNLRELQLSSCKI 270
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
+ G++ L L L HL+L G +T + +L L + G+ D G +++K L+
Sbjct: 271 SAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSRCGICDEGCENLKGLT 330
Query: 421 SLTLLNLSQNCNLTDKTL 438
L L+L N +TD L
Sbjct: 331 KLKALSLGFN-QITDACL 347
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 87/161 (54%), Gaps = 2/161 (1%)
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFG-A 382
+L S++LS + ++D L SS++SL D QI++ GL L+ + LT L + A
Sbjct: 136 SLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCA 195
Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
+T GA N NL +L++ + G+ H+K L L LNL +TD ++ +S
Sbjct: 196 AVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLS 255
Query: 443 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 483
LT L L +S+ +I++ G+ +L+ L L L LE C VTA
Sbjct: 256 DLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTA 296
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 5/162 (3%)
Query: 333 FTGISDGSLRKLAGL-SSLKSLNLDARQITDTGLAALTSLTGLTHLDL-FGARITDSGAA 390
+ G++D + +A SL S++L +TD+G L + + L + +I++ G
Sbjct: 119 YPGVTDAWMEVVASQGQSLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLK 178
Query: 391 YLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
L F NL SL I C +T G K +L +L L+L + + + L
Sbjct: 179 TLSGFSNLTSLSIKKCAA-VTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEK 237
Query: 449 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 490
+ IT + +++L L NLR L L SCK++A + L+
Sbjct: 238 LNLRYCNGITDSDMKYLSDLTNLRELQLSSCKISAFGVSYLR 279
>gi|24461848|gb|AAN62335.1|AF506028_2 CTV.1 [Citrus trifoliata]
Length = 205
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 187/272 (68%), Positives = 189/272 (69%), Gaps = 77/272 (28%)
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
LGSLFYLNLNRCQLSDDGCEKFS NLGFNEITDECLV+ +LDSC
Sbjct: 1 LGSLFYLNLNRCQLSDDGCEKFS--------NLGFNEITDECLVY----------HLDSC 42
Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
GIGDEGLVN LSFTGISDGSLRKLAG
Sbjct: 43 GIGDEGLVNY----------------------------------LSFTGISDGSLRKLAG 68
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
LSSLKSLNLDARQITDTGLAALTS HLDLFGARITDSGAAYLRNFKNLRSLEICGG
Sbjct: 69 LSSLKSLNLDARQITDTGLAALTS----AHLDLFGARITDSGAAYLRNFKNLRSLEICGG 124
Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 466
GLTDAGVKHIKDLSSL LLNLSQNCNLTDKTLE VSNSRITSAGLRH
Sbjct: 125 GLTDAGVKHIKDLSSLALLNLSQNCNLTDKTLEY-----------VSNSRITSAGLRH-- 171
Query: 467 PLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 498
LESCKVTANDIKRLQSRDLPNL
Sbjct: 172 --------PLESCKVTANDIKRLQSRDLPNLF 195
>gi|384254255|gb|EIE27729.1| RNI-like protein, partial [Coccomyxa subellipsoidea C-169]
Length = 515
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 183/494 (37%), Positives = 280/494 (56%), Gaps = 18/494 (3%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP D++Q + +EL+Y+ L + L F + +L LG+ GV D W+ +A QG+ +
Sbjct: 24 LPADLAQLVLDELIYTASLDQEGLALFSRQHIYNLKLGECAGVEDDWLRHLAPQGTGMHG 83
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+ ++ SG L +NL+ L C +S L L LS +TSL+ + + I+
Sbjct: 84 LFIT----KHSGAAGL---TNLRDLSLQGCEGLSS--LSALTDLSKVTSLNLKGCSGIS- 133
Query: 122 QGMKAFAGLINLVKLD--LERC-TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
G++ +G + L + C + G G+ +LE+L++ WC+ ITD+D+K L+
Sbjct: 134 -GLRHLSGALFCASLGSVAQMCGSEYWSG--AWAGMKQLENLDLSWCSGITDADVKALAA 190
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNR 237
LT + LQ+S + V DSGI L+ + +L L L GC ++ + S+SAL SL LNL
Sbjct: 191 LTAITGLQLSRTLVADSGIFALRSMSRLRCLGLAGCSGISNGAVGSVSALTSLEELNLEW 250
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
C +S G S + L+ LN+ + D L LTNL +LNLDSC + D GL +++
Sbjct: 251 CTVSVKGLSHLSTLTELRSLNVAYTTAGDNALAAWTSLTNLRTLNLDSCPVSDRGLHHIS 310
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLD 356
L NL+ + LSDT + G+ + L ++ +NLS+T G+ D L +A L++L L+LD
Sbjct: 311 ELTNLEDVNLSDTAITDQGMIAFAPLKGMQRLNLSYTAGVGDLGLAAVARLTALTELHLD 370
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
R TD GL + LT L LDLFGARITD+G +LR F+ L LEICGGG++D GVK +
Sbjct: 371 GRSFTDVGLRTIAPLTQLQTLDLFGARITDAGCVHLRPFRRLERLEICGGGISDEGVKEL 430
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
L+ L L+L+QN +TD+ +SGL+ L LN++ +++T G+ L+ L NL SL L
Sbjct: 431 IWLTGLQHLSLAQNARITDRASLFLSGLSQLRGLNLTGTQLTGNGILPLRSLTNLESLCL 490
Query: 477 ESCKVTANDIKRLQ 490
+ +V RLQ
Sbjct: 491 KRTRVKQAAADRLQ 504
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 99/348 (28%), Positives = 170/348 (48%), Gaps = 9/348 (2%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L++L L G+ D + +A+ +++ + LS + V DSG+ L+ S L+ L C
Sbjct: 169 LENLDLSWCSGITDADVKALAAL-TAITGLQLSRTLVADSGIFALRSMSRLRCLGLAGCS 227
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
IS+G + + L++L L+ ++ +G+ + L L L++ T L
Sbjct: 228 GISNGAVGSVSALTSLEELNLEWCT-VSVKGLSHLSTLTELRSLNVAYTTAGDNALAAWT 286
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI---AYLKGLQKLTLL 209
L L +LN+ C ++D + +S LTNL+ + +S + +TD G+ A LKG+Q+L L
Sbjct: 287 SLTNLRTLNLDSCP-VSDRGLHHISELTNLEDVNLSDTAITDQGMIAFAPLKGMQRLNLS 345
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
G V L +++ L +L L+L+ +D G + + L+ L+L ITD
Sbjct: 346 YTAG--VGDLGLAAVARLTALTELHLDGRSFTDVGLRTIAPLTQLQTLDLFGARITDAGC 403
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHLSGLTNLES 328
VHL+ LE L + GI DEG+ L L L+ L L+ + ++ LSGL+ L
Sbjct: 404 VHLRPFRRLERLEICGGGISDEGVKELIWLTGLQHLSLAQNARITDRASLFLSGLSQLRG 463
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
+NL+ T ++ + L L++L+SL L ++ L L H
Sbjct: 464 LNLTGTQLTGNGILPLRSLTNLESLCLKRTRVKQAAADRLQPLLPRIH 511
>gi|147832652|emb|CAN74892.1| hypothetical protein VITISV_002002 [Vitis vinifera]
Length = 300
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 148/181 (81%), Positives = 166/181 (91%)
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
+ GL NLESINLSFT ++D LRK + LSSLKSLNLDA QITD GLAALTSLTGLTHLDL
Sbjct: 113 MEGLANLESINLSFTAVTDSGLRKSSALSSLKSLNLDAHQITDAGLAALTSLTGLTHLDL 172
Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
FGARITDSG +YLRNFKNL+SLEICGGGLTDAGVK+IKDL+ LT+LNLSQNCNLTDK+LE
Sbjct: 173 FGARITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLTCLTVLNLSQNCNLTDKSLE 232
Query: 440 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 499
LISGLT LVSL+VSNSRIT+AGL+HLK LKNL+SLTL+SCKVT NDIK+LQS+DLPNL +
Sbjct: 233 LISGLTALVSLSVSNSRITNAGLQHLKQLKNLKSLTLDSCKVTVNDIKKLQSKDLPNLPA 292
Query: 500 F 500
F
Sbjct: 293 F 293
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 97/178 (54%), Gaps = 4/178 (2%)
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+ +L+ +NL F +TD L L++L+SLNLD+ I D GL LT L L L+L
Sbjct: 116 LANLESINLSFTAVTDSGLRKSSALSSLKSLNLDAHQITDAGLAALTSLTGLTHLDLFGA 175
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALT 369
++ SG +L NL+S+ + G++D ++ + L+ L LNL +TD L ++
Sbjct: 176 RITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLTCLTVLNLSQNCNLTDKSLELIS 235
Query: 370 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
LT L L + +RIT++G +L+ KNL+SL + +T V IK L S L NL
Sbjct: 236 GLTALVSLSVSNSRITNAGLQHLKQLKNLKSLTLDSCKVT---VNDIKKLQSKDLPNL 290
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 24/165 (14%)
Query: 148 LVNLKGLMKLESLNIKW-----------------------CNCITDSDMKPLSGLTNLKS 184
VN++GL LES+N+ + + ITD+ + L+ LT L
Sbjct: 110 FVNMEGLANLESINLSFTAVTDSGLRKSSALSSLKSLNLDAHQITDAGLAALTSLTGLTH 169
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR-CQLSDD 243
L + +++TDSG +YL+ + L L + G +T A + ++ L L LNL++ C L+D
Sbjct: 170 LDLFGARITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLTCLTVLNLSQNCNLTDK 229
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
E S + +L L++ + IT+ L HLK L NL+SL LDSC +
Sbjct: 230 SLELISGLTALVSLSVSNSRITNAGLQHLKQLKNLKSLTLDSCKV 274
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L S++LS + VTDSGL S+L+SL+ + QI+D GL L L+ LT L
Sbjct: 117 ANLESINLSFTAVTDSGLRKSSALSSLKSLNLD-AHQITDAGLAALTSLTGLTHLDLF-G 174
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC-ITDSDMKP 175
IT G NL L++ G+ N+K L L LN+ NC +TD ++
Sbjct: 175 ARITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLTCLTVLNLSQ-NCNLTDKSLEL 233
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+SGLT L SL +S S++T++G+ +LK L+ L L L+ C VT
Sbjct: 234 ISGLTALVSLSVSNSRITNAGLQHLKQLKNLKSLTLDSCKVTV 276
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 121/253 (47%), Gaps = 24/253 (9%)
Query: 152 KGLMKLESLNIKWCNCI---TDSDMKPLSGLTNLKSLQ---------ISCSKVTDSGIAY 199
+G + LE NI W + D+ + GL +++ + I K+T S I +
Sbjct: 45 EGSLDLEKANI-WLGTLLLERSEDIYRMKGLLSVQGMDERFVFQDYLILFYKITTSLIPF 103
Query: 200 ---------LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
++GL L +NL VT + L SAL SL LNL+ Q++D G +
Sbjct: 104 FYTILLFVNMEGLANLESINLSFTAVTDSGLRKSSALSSLKSLNLDAHQITDAGLAALTS 163
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+ L L+L ITD +L+ NL+SL + G+ D G+ N+ L L L LS
Sbjct: 164 LTGLTHLDLFGARITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLTCLTVLNLSQN 223
Query: 311 -QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 369
+ L +SGLT L S+++S + I++ L+ L L +LKSL LD+ ++T + L
Sbjct: 224 CNLTDKSLELISGLTALVSLSVSNSRITNAGLQHLKQLKNLKSLTLDSCKVTVNDIKKLQ 283
Query: 370 SLTGLTHLDLFGA 382
S L +L F A
Sbjct: 284 S-KDLPNLPAFAA 295
>gi|452822896|gb|EME29911.1| leucine-rich repeat family protein [Galdieria sulphuraria]
Length = 588
Score = 251 bits (641), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 173/494 (35%), Positives = 277/494 (56%), Gaps = 4/494 (0%)
Query: 3 PRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSV 62
PR++ Q++ LV SR L LE + + L V + W+ + + S+L +
Sbjct: 80 PRELIQRLVEYLVESRRLNCEFLETLQQHCVYRLRFTSQLQVTNDWLFYLQNL-STLSRL 138
Query: 63 DLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+L ++D GL +L + +L LD C+QI+ GL+HL GL L L + IT+
Sbjct: 139 ELKDCKFISDEGLSNLAEIVSLTYLDLAGCVQITSEGLQHLAGLKYLKVLVLKSCKQITS 198
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+G+ A L NL +LD+E+C+ + + +L L KLE N WC ++D + LS
Sbjct: 199 EGLSYLANLHNLTRLDIEQCSEVSDSFLQSLNRLTKLEDFNCAWCFRLSDEGLTILSNFH 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
++ L IS ++V+ + +L G+ +L +L + G + L L SL L++ C +
Sbjct: 259 RMRYLNISKTRVSQNFGRFLPGMPRLRVLKVAGTGFSDRDAQYLRGLYSLRELDVEGCSV 318
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
D + ++ LNLG+ +I++ + ++L + L+ LNLDSC IGD + +L+ L
Sbjct: 319 GDPFLATIYALPRIRKLNLGYTKISERGVSLYLGNMLKLQYLNLDSCLIGDFAVEHLSRL 378
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
LKCL+L+DT V SSGL L+ LT+LE++ L++T +S+ L L L+ L+SL+LD R
Sbjct: 379 EQLKCLDLTDTTVSSSGLSGLANLTSLETLILAYTSVSNSGLEHLKNLTKLESLSLDTRG 438
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
I+D GLA L L L HLDLFGA++TD+G ++ L SLE+C GG+TDAG++ I L
Sbjct: 439 ISDDGLAYLKKLKHLKHLDLFGAKVTDNGLRHISEISTLESLEVCAGGVTDAGLESIGKL 498
Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 479
+L LNLSQN +TD L +S L+ L SLN+S + + ++ +LR + +E C
Sbjct: 499 RALRTLNLSQNHRITDAGLIHLSCLSHLTSLNLSYTNVGDGICSLVQKCPSLRMIGIERC 558
Query: 480 KVTANDIKRLQSRD 493
++ RL++
Sbjct: 559 GLSIAAKIRLRTHQ 572
>gi|303286333|ref|XP_003062456.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455973|gb|EEH53275.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 519
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 174/517 (33%), Positives = 274/517 (52%), Gaps = 26/517 (5%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP D++Q++F+ L + LT +L F C L D V D ++ + +SL
Sbjct: 1 LPPDLAQRVFDVLARANELTVDALGRFEGCFLSDASGLDANVVTDAFLAALRDVATSLSR 60
Query: 62 VDLSGSDVTDSGLI--HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
+DL+G D SG + + C+ + ++ + C + D L + ++L S N+A+
Sbjct: 61 IDLTGCDALTSGGLRSNFPCCARMTIVNVSECAGVDDDALAAMASATHLKSFFCEGNDAV 120
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM------ 173
T G++ A L +L +L ERC R+ G+ +L GL L SLN+ WC ++ +
Sbjct: 121 TGSGVRHLASLTSLRELSFERCARLREGMCHLAGLRNLRSLNLGWCGKLSAKETSRALTP 180
Query: 174 -------KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
P S L + + T + L G +L LN+ GC + L L
Sbjct: 181 FFPASASAPRSTPIELSLARTGANADTARALGQLAG--RLVALNVSGCAMNDDALHFLGG 238
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
L +L L+L RC++SD G + + L+ LNLG+ +T++ ++ L LT L +NLDS
Sbjct: 239 LINLRSLSLERCRVSDVGVRQLCGLRDLRELNLGYTRVTNDGVLALAPLTELRVVNLDSL 298
Query: 287 G-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
G +GD G+ L+ L +SDT VG G+R L L +NL +T ++D L L
Sbjct: 299 GDVGDAGMEVARRWEKLESLCVSDTGVGDGGVRKLKSCARLRDLNLGYTNVTDDGLEHLE 358
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK---NLRSLE 402
++SL++LNLD+R ITD G+ L +L LT +DLFGA+I+D GA+ L FK L LE
Sbjct: 359 DMTSLRNLNLDSRLITDDGVRHLANLGALTAIDLFGAKISDEGASRL--FKCTPKLERLE 416
Query: 403 ICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
+CGG LT+ GVK I + + LN+ +N +TD ++ + + L SLN++ S+ITS G
Sbjct: 417 LCGGSLTNVGVKRIAEHCKGMKTLNIGRNAKITDDCVDDVVTMRELTSLNLAFSKITSDG 476
Query: 462 LRHLKPLKNLRSLTLESCK-VTANDIKRLQSRDLPNL 497
+R L L L SL ++ C+ V+ ++RL+ R+ P L
Sbjct: 477 VRKLAALPCLTSLAIKGCESVSLAAVERLK-REAPAL 512
>gi|59802533|gb|AAX07510.1| putative regulatory subunit [Gemmata sp. Wa1-1]
Length = 550
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 170/433 (39%), Positives = 252/433 (58%), Gaps = 4/433 (0%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L S+ LS + VT+ GL LK+ +NL +LD F ++D GL+ L+GL+NLTSL+
Sbjct: 18 ANLTSLGLSATKVTNEGLKELKELTNLTALDL-FSTGVTDTGLQELKGLTNLTSLNLGVT 76
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T G++ GL NL L+L GL +LKGL KL SL+++ +TD ++ L
Sbjct: 77 Q-VTGAGLQELKGLTNLTSLNLGSTGVTDAGLQDLKGLNKLASLDLRGTE-VTDVGLQEL 134
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
GL +L L++ ++VT+ G+ LKGL L L+L VT L L L +L L+L
Sbjct: 135 KGLNSLTELRLRATEVTNVGLQELKGLNNLASLDLRDTRVTDVGLQELKGLNNLASLDLR 194
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+++D G ++ + +L L+L ++TD L L GLT L SL+L G+ GL+ L
Sbjct: 195 DTKVTDTGLKELKGLTNLTALDLFSTQVTDVGLKELNGLTKLASLDLSRTGVTGTGLIEL 254
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
L L+LS T+V +GL L GLT+L S++L T ++D L++L GL+SL SL+L
Sbjct: 255 KSFTKLALLDLSGTRVTDAGLHQLKGLTSLTSLHLGGTRVTDVGLKELKGLTSLTSLHLS 314
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
+ TD GL L LT LT L L R+TD G L++F L SL + G G+TD G+K +
Sbjct: 315 GTRTTDAGLQELNGLTNLTSLHLSDTRVTDVGLKELKSFTKLTSLHLGGTGVTDTGLKEL 374
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
K L++LT L+L + +TD L+ ++GLT L SL +S + IT GL+ LK L L L L
Sbjct: 375 KGLTNLTALDLF-STQVTDVGLQELNGLTKLTSLYLSAAAITDTGLKELKELTQLALLDL 433
Query: 477 ESCKVTANDIKRL 489
+VT ++ L
Sbjct: 434 SGTRVTDAGLQEL 446
Score = 244 bits (622), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 187/512 (36%), Positives = 275/512 (53%), Gaps = 31/512 (6%)
Query: 15 VYSRCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSG 73
++S +T+ L+ + A L L L N+ ++ + ++L ++DL + VTD+G
Sbjct: 1 LFSTQVTDAGLQELKGLANLTSLGLSATKVTNEGLKEL--KELTNLTALDLFSTGVTDTG 58
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR------------------- 114
L LK +NL SL+ Q++ GL+ L+GL+NLTSL+
Sbjct: 59 LQELKGLTNLTSLNLGVT-QVTGAGLQELKGLTNLTSLNLGSTGVTDAGLQDLKGLNKLA 117
Query: 115 ----RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
R +T G++ GL +L +L L + GL LKGL L SL+++ +TD
Sbjct: 118 SLDLRGTEVTDVGLQELKGLNSLTELRLRATEVTNVGLQELKGLNNLASLDLRDTR-VTD 176
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
++ L GL NL SL + +KVTD+G+ LKGL LT L+L VT L L+ L L
Sbjct: 177 VGLQELKGLNNLASLDLRDTKVTDTGLKELKGLTNLTALDLFSTQVTDVGLKELNGLTKL 236
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L+L+R ++ G + L +L+L +TD L LKGLT+L SL+L + D
Sbjct: 237 ASLDLSRTGVTGTGLIELKSFTKLALLDLSGTRVTDAGLHQLKGLTSLTSLHLGGTRVTD 296
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
GL L GL +L L LS T+ +GL+ L+GLTNL S++LS T ++D L++L + L
Sbjct: 297 VGLKELKGLTSLTSLHLSGTRTTDAGLQELNGLTNLTSLHLSDTRVTDVGLKELKSFTKL 356
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
SL+L +TDTGL L LT LT LDLF ++TD G L L SL + +TD
Sbjct: 357 TSLHLGGTGVTDTGLKELKGLTNLTALDLFSTQVTDVGLQELNGLTKLTSLYLSAAAITD 416
Query: 411 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 470
G+K +K+L+ L LL+LS +TD L+ +SGLT L L + +R+T AGL+ LK L +
Sbjct: 417 TGLKELKELTQLALLDLS-GTRVTDAGLQELSGLTKLAFLRLGGTRVTDAGLKELKGLTS 475
Query: 471 LRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 502
L SL L +VT ++ L L NL + P
Sbjct: 476 LTSLHLSGTRVTDAGLQELSG--LTNLTTTGP 505
>gi|219122964|ref|XP_002181805.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407081|gb|EEC47019.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 486
Score = 234 bits (597), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 166/492 (33%), Positives = 262/492 (53%), Gaps = 20/492 (4%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP+D+ I L+ L +L R+C L L L GV D+W++ ++++ S
Sbjct: 1 LPQDVVDDILQSLIRHSALNATTLRILRNCELGVLSLSGCRGVTDEWLEALSAESSD--- 57
Query: 62 VDLSGSDVTDSGLIHLKDCS----NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
S + + + H S N LD +++D GL L L L +
Sbjct: 58 ---SPPHLRTALMWHPCAASSALTNTTLLDLRGSQRLTDRGLMQLHDLGRLEVAKLDNCH 114
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
++ +G+ + L L L C R+ +VN+ L L++L++ C CITD + L
Sbjct: 115 SVVGRGLVVLSSSPRLHTLSLTNCRRLTDEAIVNISHLQSLQALSLDGCRCITDFSLAAL 174
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSAL----GSL 230
+ + NL+ L +S C +T+ G+ L+ LQ+L ++L C V+ A + +L+A +L
Sbjct: 175 ADMYNLRKLGLSQCDLITNEGLKALEHLQRLQEISLGWCRQVSDAGIQTLTAQPGRSSNL 234
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L L RC ++D+G + KI ++K L L ++ + D L L L LE LNLDSC IGD
Sbjct: 235 QILRLARCPITDEGVQYLGKIRNVKTLELCYSAVKDIHLTKLVNLPMLEELNLDSCPIGD 294
Query: 291 ---EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
+ N L NL L+L+D+ + G+ ++ T L+ ++L + IS+ LR L+ L
Sbjct: 295 LAIQHFANHNVLPNLVSLDLADSDISDLGMVQIAKFTKLKRLSLFYCSISNRGLRHLSIL 354
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
+ L+ LNLD+R I+D GL L L L LD+F R+TD G YL K L SLE+CGGG
Sbjct: 355 TELRVLNLDSRDISDDGLRHLQHLKQLKSLDIFSGRVTDLGCTYLSKIKTLESLELCGGG 414
Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 467
+ DAG + L +LT LNLSQN +T++ ++ L+ L +LN+S++R+ ++ LR+
Sbjct: 415 VRDAGCASLAKLENLTSLNLSQNERITNRGAAALAALSKLKALNLSHTRVNASALRYFSG 474
Query: 468 LKNLRSLTLESC 479
L NL+SL L C
Sbjct: 475 LMNLQSLALYGC 486
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 115/417 (27%), Positives = 189/417 (45%), Gaps = 62/417 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L++C L L + C ++D LE L S+ + R A+ A + L N L
Sbjct: 27 LRNC-ELGVLSLSGCRGVTDEWLEALSAESSDSPPHLR--TALMWHPCAASSALTNTTLL 83
Query: 137 DLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD 194
DL R+ GL+ L L +LE + C+ + + LS L +L ++ C ++TD
Sbjct: 84 DLRGSQRLTDRGLMQLHDLGRLEVAKLDNCHSVVGRGLVVLSSSPRLHTLSLTNCRRLTD 143
Query: 195 SGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
I + LQ L L+L+GC +T L +L+ + +L L L++C L
Sbjct: 144 EAIVNISHLQSLQALSLDGCRCITDFSLAALADMYNLRKLGLSQCDL------------- 190
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL----CNLKCLELS 308
IT+E L L+ L L+ ++L C + D G+ LT NL+ L L+
Sbjct: 191 ----------ITNEGLKALEHLQRLQEISLGWCRQVSDAGIQTLTAQPGRSSNLQILRLA 240
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
+ G+++L + N++++ L ++ + D L KL L L+ LNLD+ I D +
Sbjct: 241 RCPITDEGVQYLGKIRNVKTLELCYSAVKDIHLTKLVNLPMLEELNLDSCPIGDLAIQHF 300
Query: 369 TS---LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
+ L L LDL + I+D G + F L+ L + +++ G++H+
Sbjct: 301 ANHNVLPNLVSLDLADSDISDLGMVQIAKFTKLKRLSLFYCSISNRGLRHL--------- 351
Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
S LT L LN+ + I+ GLRHL+ LK L+SL + S +VT
Sbjct: 352 ----------------SILTELRVLNLDSRDISDDGLRHLQHLKQLKSLDIFSGRVT 392
>gi|302853080|ref|XP_002958057.1| hypothetical protein VOLCADRAFT_99233 [Volvox carteri f.
nagariensis]
gi|300256635|gb|EFJ40897.1| hypothetical protein VOLCADRAFT_99233 [Volvox carteri f.
nagariensis]
Length = 581
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 191/530 (36%), Positives = 284/530 (53%), Gaps = 42/530 (7%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCL-GQYPGVNDKWMDVIASQGSSLL 60
LP D+ Q++F+EL+ + + L FR+ L + L G+ ND+ + + S L
Sbjct: 41 LPADLVQRVFDELLAAGRFSLSDLTRFRELDLDTVVLVGRADVRNDRLRSL--EKCSRLR 98
Query: 61 SVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
S+DL+G V+D G+ L+ LQ L + C+ ++D L H+RGL+ L L R I
Sbjct: 99 SLDLTGCVQVSDVGVASLRRHGGLQRLRLSHCVTLTDAALNHVRGLTGLQELELRECELI 158
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
T +G+ +GL L LDL++C RI GGL +L L L +L + WC + DS++ L L
Sbjct: 159 TGEGLMQLSGLTQLKTLDLDQCRRIKGGLQHLTSLRHLATLRLGWCPLLGDSEVTWLREL 218
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC 238
L+ L+++ ++VTD G+++L L LT L+L GC +T A L L +L L+L
Sbjct: 219 GQLRELRLAYTQVTDVGVSHLAALTALTHLDLGGCTRLTDAAAAPLQRLTALQVLSLY-- 276
Query: 239 QLSDDGCEKFSKIGSLKVLNLG----------FNEITDECLVHLKGLTNLESLNLDSCGI 288
GC +F G ++ + + +T L L L+ L L+LDSC +
Sbjct: 277 -----GCGQFGNAGLAMLIAVPLLSLNSLTLSYTAVTTPGLTALSSLSRLTLLSLDSCAV 331
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS---GLTNLESINLSFTG---------- 335
GD L L L L+LS+T VG GL L+ T+L + L++T
Sbjct: 332 GDAVCRVLRRLPRLANLDLSETSVGDGGLDALTVSGPPTSLTHLKLTYTKVNELGMPGKC 391
Query: 336 --ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA---- 389
I+D L KL+ L L+ L+LD+ +TD L +T L+ LT LDLF RITD+GA
Sbjct: 392 VFITDEGLSKLSLLVGLQQLDLDSGTLTDACLRHVTGLSALTGLDLFSCRITDAGARLLG 451
Query: 390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLV 448
NLRSLE CGG LTDAG H+ L+SLT LNLSQN L D + L + L+ L
Sbjct: 452 GSGHLGGNLRSLECCGGLLTDAGAVHLARLTSLTCLNLSQNARLGDAGAQSLAASLSDLQ 511
Query: 449 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 498
L+++++ ITSA LR + L LR L++ + +VT + +L+SR P+L+
Sbjct: 512 ELSLNHTNITSACLRDVAALPWLRYLSVSNTRVTDAAVAKLRSRAHPDLI 561
>gi|147821391|emb|CAN67937.1| hypothetical protein VITISV_014237 [Vitis vinifera]
Length = 216
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 114/178 (64%), Positives = 138/178 (77%), Gaps = 17/178 (9%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQIF+ V S CLT SLEAFRDCA+QD+ LG+YP VND WMD+I+SQG SLL
Sbjct: 47 MLPRDISQQIFDNFVDSHCLTSASLEAFRDCAIQDVNLGEYPEVNDSWMDIISSQGLSLL 106
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGS VTD GL LKDCSN+Q L FN+C QIS+ GL+++ GLSNLTSLSF+++N +T
Sbjct: 107 SVDLSGSSVTDDGLSLLKDCSNIQVLSFNYCDQISEPGLKNISGLSNLTSLSFKKSNTVT 166
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
A+GM+AF+ L+NL KLDLERC+RIHGGL++LK DSD+K LSG
Sbjct: 167 AEGMRAFSSLVNLAKLDLERCSRIHGGLIHLK-----------------DSDLKALSG 207
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456
+L S+++ G +TD G+ +KD S++ +L+ + +++ L+ ISGL+ L SL+ S
Sbjct: 104 SLLSVDLSGSSVTDDGLSLLKDCSNIQVLSFNYCDQISEPGLKNISGLSNLTSLSFKKSN 163
Query: 457 -ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 497
+T+ G+R L NL L LE C + L+ DL L
Sbjct: 164 TVTAEGMRAFSSLVNLAKLDLERCSRIHGGLIHLKDSDLKAL 205
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 73/135 (54%), Gaps = 6/135 (4%)
Query: 349 SLKSLNL-DARQITDTGLAALTSLT-GLTHLDLFGARITDSGAAYLRNFKNLR--SLEIC 404
+++ +NL + ++ D+ + ++S L +DL G+ +TD G + L++ N++ S C
Sbjct: 78 AIQDVNLGEYPEVNDSWMDIISSQGLSLLSVDLSGSSVTDDGLSLLKDCSNIQVLSFNYC 137
Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
+++ G+K+I LS+LT L+ ++ +T + + S L L L++ GL H
Sbjct: 138 -DQISEPGLKNISGLSNLTSLSFKKSNTVTAEGMRAFSSLVNLAKLDLERCSRIHGGLIH 196
Query: 465 LKPLKNLRSLTLESC 479
LK +L++L+ C
Sbjct: 197 LKD-SDLKALSGNVC 210
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ I++QG+ +L+ +DL + GL LK ++ L+ +C+ I++ +K +
Sbjct: 96 DIISSQGL-------SLLSVDLSGSSVTDDGLSLLKDCSNIQVLSFNYCDQISEPGLKNI 148
Query: 177 SGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGC 214
SGL+NL SL S VT G+ L L L+LE C
Sbjct: 149 SGLSNLTSLSFKKSNTVTAEGMRAFSSLVNLAKLDLERC 187
>gi|307107435|gb|EFN55678.1| hypothetical protein CHLNCDRAFT_133919 [Chlorella variabilis]
Length = 553
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 176/476 (36%), Positives = 259/476 (54%), Gaps = 47/476 (9%)
Query: 20 LTEVSLEAFRDCALQDLCLGQYPG-VNDKWMDVIASQGSSLLSVDLSGSDVT--DSGLIH 76
L+ + L FR L LG YP V W+ +++ SL + DLS ++ + D L
Sbjct: 65 LSGLGLHFFR------LPLGAYPERVQPSWLRCLST--PSLEAADLSKTEASGMDEVLAS 116
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L +L L ++C+ ++DGGL L+G+++L LS +TA GM GL L +L
Sbjct: 117 LGPTPHLAQLCLDYCVDLTDGGLALLQGMTSLEELSLAGCELLTAVGMGHLRGLTRLRRL 176
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
L+ C +I L L L +LE L++ WC+ + DSD ++VTD G
Sbjct: 177 SLQTCHQI--SLAPLAQLRQLEQLDVGWCSSLDDSD-----------------AQVTDHG 217
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRC-QLSDDGCEKFSKIG-S 253
+A L L +L LNL G V+ L +L L L LNL RC Q D S+
Sbjct: 218 LACLHSLGQLRALNLAGVRVSDEALAALLRHLPHLRALNLERCLQAGDASLAAVSQRALQ 277
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
L+ L+LG+ ++D L+ L GLT L L+L++C +GD GL L+ L ++ L+LSDT
Sbjct: 278 LRELHLGYTAVSDRGLLLLGGLTQLHVLSLENCSVGDGGLAVLSHLTQMRQLDLSDTSAS 337
Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
+ + ++ + LE +NLSFTG++D L++L LSSL+ LNLD+R TD G+ ++ L G
Sbjct: 338 NETMSTVAAMRQLECLNLSFTGVNDLGLKRLRRLSSLRCLNLDSRHFTDAGMVSVAQLAG 397
Query: 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
L LDLFGARI D+G A L KNLR LE+CGGG+TDAGV H+ L+ L L+L+Q
Sbjct: 398 LECLDLFGARIGDAGCASLSKLKNLRRLEVCGGGVTDAGVAHLVALTRLQHLSLAQ---- 453
Query: 434 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL-ESCKVTANDIKR 488
S G S + N R++++ + HL L L +L L ++C T ++ R
Sbjct: 454 -------ASACWG--SCTLPNYRVSNSCILHLIKLNELMALNLSQACACTTQNLHR 500
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 105/352 (29%), Positives = 169/352 (48%), Gaps = 35/352 (9%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKL 206
L +L L L + +C +TD + L G+T+L+ L ++ C +T G+ +L+GL +L
Sbjct: 114 LASLGPTPHLAQLCLDYCVDLTDGGLALLQGMTSLEELSLAGCELLTAVGMGHLRGLTRL 173
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRC--------QLSDDGCEKFSKIGSLKVLN 258
L+L+ C + L L+ L L L++ C Q++D G +G L+ LN
Sbjct: 174 RRLSLQTCHQIS--LAPLAQLRQLEQLDVGWCSSLDDSDAQVTDHGLACLHSLGQLRALN 231
Query: 259 LGFNEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
L ++DE L L + L +L +LNL+ +CL+ D + +
Sbjct: 232 LAGVRVSDEALAALLRHLPHLRALNLE------------------RCLQAGDASLAAVSQ 273
Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
R L L ++L +T +SD L L GL+ L L+L+ + D GLA L+ LT + L
Sbjct: 274 RAL----QLRELHLGYTAVSDRGLLLLGGLTQLHVLSLENCSVGDGGLAVLSHLTQMRQL 329
Query: 378 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
DL ++ + + + L L + G+ D G+K ++ LSSL LNL + TD
Sbjct: 330 DLSDTSASNETMSTVAAMRQLECLNLSFTGVNDLGLKRLRRLSSLRCLNLDSR-HFTDAG 388
Query: 438 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
+ ++ L GL L++ +RI AG L LKNLR L + VT + L
Sbjct: 389 MVSVAQLAGLECLDLFGARIGDAGCASLSKLKNLRRLEVCGGGVTDAGVAHL 440
>gi|428173313|gb|EKX42216.1| hypothetical protein GUITHDRAFT_74106 [Guillardia theta CCMP2712]
Length = 527
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 180/481 (37%), Positives = 276/481 (57%), Gaps = 9/481 (1%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAF-RDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+P ++ Q +F+ L YSR L + L R C D L YP + D W++V+ +L
Sbjct: 42 IPNEMVQALFDSLAYSRRLEKSHLPLLSRIC---DASLFAYPLIADDWLEVLGESFHALT 98
Query: 61 SVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
+D+S VTD G+ L+ +L+S+ C+++ D LE + LS+L+ LS +
Sbjct: 99 RLDMSNCIHVTDEGISRLRSLQSLRSIKLENCLRLGDATLEVIGELSSLSHLSVSACTRM 158
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ G+ + L+ + L+LER TR+ G+ +L+ L L LN+ W N DS + L
Sbjct: 159 ASSGVSCLSQLVRMTDLNLERLTRLDSEGIESLEKLTNLRILNLGWTNADDDS-FESLRS 217
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-ACLDSLSALGSLFYLNLNR 237
L LK L + T+ G+ L L +L L + C V A + L LS+LG L L+L++
Sbjct: 218 LPRLKRLNVCACPFTEDGLQALCSLTQLESLRMCSCKVGATSALVELSSLGKLKLLDLSQ 277
Query: 238 CQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
C+ + D E + LK+L L +TD L +L L +L++LNLD C + + GL +
Sbjct: 278 CEHVGDQTLEALRGLSDLKILLLAHTRVTDIGLGYLSSLWDLKTLNLDCCHVTNGGLQTI 337
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
L NL+ L+LSD V SSGL L+GLT L+S+NL TG+SD + + GL++L LNLD
Sbjct: 338 ANLTNLENLDLSDNVVTSSGLALLTGLTTLKSLNLFSTGVSDAGVIHVTGLTNLVRLNLD 397
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
+R ITD+GLA ++ LT L LDLFGA++T G Y+ +L SLE+CGGGLTD ++ +
Sbjct: 398 SRLITDSGLACISGLTNLQELDLFGAKVTHHGTIYIGLLTSLTSLELCGGGLTDEAMREL 457
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
K L+ + LN+SQN +L++ + +S ++ L SLN++ + +S G RHL +L SL L
Sbjct: 458 KRLTRMRNLNVSQNESLSNGSFIPMSRMSLLTSLNIAGTNFSSDGARHLTIFTDLTSLCL 517
Query: 477 E 477
Sbjct: 518 R 518
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 115/225 (51%), Gaps = 6/225 (2%)
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGL-VNLTGLCNLKCLELSDTQVGSSGLRHL 320
+TDE + L+ L +L S+ L++C +GD L V + T++ SSG+ L
Sbjct: 107 HVTDEGISRLRSLQSLRSIKLENCLRLGDATLEVIGELSSLSHLSVSACTRMASSGVSCL 166
Query: 321 SGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
S L + +NL T + + L L++L+ LNL D +L SL L L++
Sbjct: 167 SQLVRMTDLNLERLTRLDSEGIESLEKLTNLRILNLGWTNADDDSFESLRSLPRLKRLNV 226
Query: 380 FGARITDSGAAYLRNFKNLRSLEICGG--GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
T+ G L + L SL +C G T A V+ L L LL+LSQ ++ D+T
Sbjct: 227 CACPFTEDGLQALCSLTQLESLRMCSCKVGATSALVELSS-LGKLKLLDLSQCEHVGDQT 285
Query: 438 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
LE + GL+ L L ++++R+T GL +L L +L++L L+ C VT
Sbjct: 286 LEALRGLSDLKILLLAHTRVTDIGLGYLSSLWDLKTLNLDCCHVT 330
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 108/231 (46%), Gaps = 28/231 (12%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L+ + VTD GL +L +L++L+ + C +++GGL+ + L+NL +L +N +T+ G
Sbjct: 300 LAHTRVTDIGLGYLSSLWDLKTLNLD-CCHVTNGGLQTIANLTNLENLDLS-DNVVTSSG 357
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ GL L L+L G++++ GL L LN+ ITDS + +SGLTNL+
Sbjct: 358 LALLTGLTTLKSLNLFSTGVSDAGVIHVTGLTNLVRLNLD-SRLITDSGLACISGLTNLQ 416
Query: 184 SLQISCSKVTDSGIAY------------------------LKGLQKLTLLNL-EGCPVTA 218
L + +KVT G Y LK L ++ LN+ + ++
Sbjct: 417 ELDLFGAKVTHHGTIYIGLLTSLTSLELCGGGLTDEAMRELKRLTRMRNLNVSQNESLSN 476
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
+S + L LN+ S DG + L L L F+ ++ CL
Sbjct: 477 GSFIPMSRMSLLTSLNIAGTNFSSDGARHLTIFTDLTSLCLRFDCLSRTCL 527
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 26/189 (13%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++DLS + VT SGL L + L+SL+ F +SD G+ H+ GL+NL L+ +
Sbjct: 341 TNLENLDLSDNVVTSSGLALLTGLTTLKSLNL-FSTGVSDAGVIHVTGLTNLVRLNLD-S 398
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLV------------------------NLK 152
IT G+ +GL NL +LDL H G + LK
Sbjct: 399 RLITDSGLACISGLTNLQELDLFGAKVTHHGTIYIGLLTSLTSLELCGGGLTDEAMRELK 458
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L ++ +LN+ +++ P+S ++ L SL I+ + + G +L LT L L
Sbjct: 459 RLTRMRNLNVSQNESLSNGSFIPMSRMSLLTSLNIAGTNFSSDGARHLTIFTDLTSLCLR 518
Query: 213 GCPVTAACL 221
++ CL
Sbjct: 519 FDCLSRTCL 527
>gi|46447560|ref|YP_008925.1| hypothetical protein pc1926 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401201|emb|CAF24650.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 761
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 161/423 (38%), Positives = 239/423 (56%), Gaps = 12/423 (2%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+T++ L+ LKDC NL++L C ++D GLEHL L+ L L+ R +T G+
Sbjct: 207 LTNAHLLALKDCKNLKALHLEACQALTDDGLEHLTLLTALQHLNLSRCKNLTDAGLAHLT 266
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L LDL C + GL L+ L L+ L+++ C+ ITD+ + L+ L L+ L +
Sbjct: 267 PLTGLQYLDLSHCNKFTDAGLAYLEILTALQHLDLRGCDKITDAGLSHLTPLVALQYLSL 326
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
S C +TD+G+ +LK L L LNL C +T A L+ L+ L SL +LNL+ C +L+D G
Sbjct: 327 SQCWNLTDAGLIHLKPLTALQYLNLSRCNKLTDAGLEHLALLTSLQHLNLSSCKKLTDAG 386
Query: 245 CEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNL 302
+ + +L+ L+L N++TD L HL LT L+ LNL C I + GL +L L L
Sbjct: 387 LAHLTPLMALQHLDLSICNKLTDRGLTHLNPLTALQYLNLSQCDNITNAGLEHLIPLTAL 446
Query: 303 KCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQ 359
+ L LS ++ +GL HL+ LT L+ ++LS+ ++D L L+ L+ L+L +
Sbjct: 447 QYLNLSQCEKLTDAGLEHLTPLTALQQLDLSWCYKLTDAGFAHLTPLTGLQYLDLSHCNK 506
Query: 360 ITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIK 417
+TD GLA LT LT L +LDL ++TD G A+L L+ L + LTDAG H+
Sbjct: 507 LTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHLTPLMALQHLNLSSCYKLTDAGFAHLS 566
Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 476
L++L L+LS NLTD L ++ LT L L++ +T AGL HLK L +L+ L L
Sbjct: 567 PLTALQRLDLSYCQNLTDAELAHLTPLTALQRLDLRYCENLTDAGLVHLKLLTDLQYLNL 626
Query: 477 ESC 479
C
Sbjct: 627 RGC 629
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 178/491 (36%), Positives = 277/491 (56%), Gaps = 18/491 (3%)
Query: 4 RDISQQIFNELVYSRCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSV 62
+ I + F+ VY LT L A +DC L+ L L + D ++ + + ++L +
Sbjct: 194 KKIERLNFSNQVY---LTNAHLLALKDCKNLKALHLEACQALTDDGLEHL-TLLTALQHL 249
Query: 63 DLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+LS ++TD+GL HL + LQ LD + C + +D GL +L L+ L L R + IT
Sbjct: 250 NLSRCKNLTDAGLAHLTPLTGLQYLDLSHCNKFTDAGLAYLEILTALQHLDLRGCDKITD 309
Query: 122 QGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
G+ L+ L L L +C + GL++LK L L+ LN+ CN +TD+ ++ L+ LT
Sbjct: 310 AGLSHLTPLVALQYLSLSQCWNLTDAGLIHLKPLTALQYLNLSRCNKLTDAGLEHLALLT 369
Query: 181 NLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC 238
+L+ L + SC K+TD+G+A+L L L L+L C +T L L+ L +L YLNL++C
Sbjct: 370 SLQHLNLSSCKKLTDAGLAHLTPLMALQHLDLSICNKLTDRGLTHLNPLTALQYLNLSQC 429
Query: 239 -QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVN 295
+++ G E + +L+ LNL E +TD L HL LT L+ L+L C + D G +
Sbjct: 430 DNITNAGLEHLIPLTALQYLNLSQCEKLTDAGLEHLTPLTALQQLDLSWCYKLTDAGFAH 489
Query: 296 LTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSL 353
LT L L+ L+LS ++ +GL HL+ LT L+ ++LS ++D L L L +L+ L
Sbjct: 490 LTPLTGLQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHLTPLMALQHL 549
Query: 354 NLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEI-CGGGLTD 410
NL + ++TD G A L+ LT L LDL + +TD+ A+L L+ L++ LTD
Sbjct: 550 NLSSCYKLTDAGFAHLSPLTALQRLDLSYCQNLTDAELAHLTPLTALQRLDLRYCENLTD 609
Query: 411 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLK 469
AG+ H+K L+ L LNL LTD L ++ L+GL L++S+ ++T AGL HLK L
Sbjct: 610 AGLVHLKLLTDLQYLNLRGCGYLTDAGLAHLTTLSGLQHLDLSSCEKLTDAGLVHLKLLT 669
Query: 470 NLRSLTLESCK 480
+L+ L L C+
Sbjct: 670 DLQYLNLSRCE 680
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 157/428 (36%), Positives = 243/428 (56%), Gaps = 12/428 (2%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GLIHLK + LQ L+ + C +++D GLEHL L++L L+ +T G+
Sbjct: 331 NLTDAGLIHLKPLTALQYLNLSRCNKLTDAGLEHLALLTSLQHLNLSSCKKLTDAGLAHL 390
Query: 128 AGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L+ L LDL C ++ GL +L L L+ LN+ C+ IT++ ++ L LT L+ L
Sbjct: 391 TPLMALQHLDLSICNKLTDRGLTHLNPLTALQYLNLSQCDNITNAGLEHLIPLTALQYLN 450
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
+S C K+TD+G+ +L L L L+L C +T A L+ L L YL+L+ C +L+D
Sbjct: 451 LSQCEKLTDAGLEHLTPLTALQQLDLSWCYKLTDAGFAHLTPLTGLQYLDLSHCNKLTDA 510
Query: 244 GCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
G + + +L+ L+L ++TD+ L HL L L+ LNL SC + D G +L+ L
Sbjct: 511 GLAHLTPLTALQYLDLSNCIKLTDDGLAHLTPLMALQHLNLSSCYKLTDAGFAHLSPLTA 570
Query: 302 LKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-R 358
L+ L+LS Q + + L HL+ LT L+ ++L + ++D L L L+ L+ LNL
Sbjct: 571 LQRLDLSYCQNLTDAELAHLTPLTALQRLDLRYCENLTDAGLVHLKLLTDLQYLNLRGCG 630
Query: 359 QITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI 416
+TD GLA LT+L+GL HLDL ++TD+G +L+ +L+ L + LTD G+ +
Sbjct: 631 YLTDAGLAHLTTLSGLQHLDLSSCEKLTDAGLVHLKLLTDLQYLNLSRCENLTDEGLALL 690
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLT 475
L++L L L NLTD L ++ LTGL L++S +T AGL HLK L L+ L
Sbjct: 691 TPLTALQHLKLRYCINLTDAGLAHLTPLTGLQRLDLSQCWNLTDAGLIHLKLLTALQHLN 750
Query: 476 LESCKVTA 483
L ++
Sbjct: 751 LSDTNISP 758
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 125/346 (36%), Positives = 194/346 (56%), Gaps = 12/346 (3%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
K+E LN +T++ + L NLK+L + +C +TD G+ +L L L LNL C
Sbjct: 195 KIERLNFSNQVYLTNAHLLALKDCKNLKALHLEACQALTDDGLEHLTLLTALQHLNLSRC 254
Query: 215 P-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVH 271
+T A L L+ L L YL+L+ C + +D G + +L+ L+L G ++ITD L H
Sbjct: 255 KNLTDAGLAHLTPLTGLQYLDLSHCNKFTDAGLAYLEILTALQHLDLRGCDKITDAGLSH 314
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESI 329
L L L+ L+L C + D GL++L L L+ L LS ++ +GL HL+ LT+L+ +
Sbjct: 315 LTPLVALQYLSLSQCWNLTDAGLIHLKPLTALQYLNLSRCNKLTDAGLEHLALLTSLQHL 374
Query: 330 NLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA-RITD 386
NLS ++D L L L +L+ L+L ++TD GL L LT L +L+L IT+
Sbjct: 375 NLSSCKKLTDAGLAHLTPLMALQHLDLSICNKLTDRGLTHLNPLTALQYLNLSQCDNITN 434
Query: 387 SGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 445
+G +L L+ L + LTDAG++H+ L++L L+LS LTD ++ LT
Sbjct: 435 AGLEHLIPLTALQYLNLSQCEKLTDAGLEHLTPLTALQQLDLSWCYKLTDAGFAHLTPLT 494
Query: 446 GLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRL 489
GL L++S+ +++T AGL HL PL L+ L L +C K+T + + L
Sbjct: 495 GLQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHL 540
>gi|46446666|ref|YP_008031.1| hypothetical protein pc1032 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400307|emb|CAF23756.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 734
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 173/484 (35%), Positives = 262/484 (54%), Gaps = 13/484 (2%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHL 77
LT+ L ++C L+ L + GV D + + + ++L +DLS + +TD GL HL
Sbjct: 237 LTDAHLLTLKNCKNLKILHFKKCWGVTDAGLAHL-TPLTTLQYLDLSDCEKLTDDGLAHL 295
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
+ LQ LD ++C ++D GL HL L+ L L+ R + G+ L L L+
Sbjct: 296 TPLTGLQHLDLSWCSSLTDAGLAHLTPLTALQHLNLNRCEYLKDAGLAHLTPLTGLQHLN 355
Query: 138 LERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDS 195
L RC + GL +LK L L+ LN+ C +TD+ + L+ LT L+ L +S C+ +TD+
Sbjct: 356 LNRCKDLTDAGLSHLKPLTALQHLNLSECWKLTDAGLAHLTPLTALQHLDLSRCNSLTDA 415
Query: 196 GIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGS 253
G+A+L L L L+L C T A L L++L L YLNL+ + L+D G + + +
Sbjct: 416 GLAHLTPLTALQHLDLSDCQNFTDAGLAHLTSLTGLQYLNLSEYKNLTDAGLAHLTPLTA 475
Query: 254 LKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-T 310
L+ LNL + TD L HL LT L+ L+L C + D+GL +L L L+ L LS
Sbjct: 476 LQHLNLCNCRKFTDNGLAHLTPLTALQHLDLSHCKNLTDDGLAHLAPLTGLQRLVLSWCD 535
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALT 369
++ +GL HL+ LT L+ ++LS I+D L L L+ L+ L L Q+TD GLA LT
Sbjct: 536 KLTDAGLAHLTPLTALQYLDLSCCEITDAGLAHLTPLTGLQHLVLVYCWQLTDAGLAHLT 595
Query: 370 SLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 427
LT L +L L R+TD+G A+L L+ L + LTD G+ H+ L++L L L
Sbjct: 596 PLTTLQYLYLGSCNRLTDAGLAHLAPLTALQHLALNDCRKLTDTGLAHLTPLTALQHLTL 655
Query: 428 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 487
++ LTD L + L L L++S IT AGL HL L L+ L L ++T + ++
Sbjct: 656 NRCEKLTDDGLAHLKPLAALQYLDLSYCEITDAGLAHLTHLMALQRLDLYGREITDDGLE 715
Query: 488 RLQS 491
R ++
Sbjct: 716 RFET 719
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 143/398 (35%), Positives = 212/398 (53%), Gaps = 33/398 (8%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
D+TD+GL HLK + LQ L+ + C +++D GL HL L+ L L R N++T G+
Sbjct: 361 DLTDAGLSHLKPLTALQHLNLSECWKLTDAGLAHLTPLTALQHLDLSRCNSLTDAGLAHL 420
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L L LDL C GL +L L L+ LN+ +TD+ + L+ LT L+ L
Sbjct: 421 TPLTALQHLDLSDCQNFTDAGLAHLTSLTGLQYLNLSEYKNLTDAGLAHLTPLTALQHLN 480
Query: 187 I-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDG 244
+ +C K TD+G+A+L P+TA L +L+L+ C+ L+DDG
Sbjct: 481 LCNCRKFTDNGLAHLT-------------PLTA-----------LQHLDLSHCKNLTDDG 516
Query: 245 CEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
+ + L+ L L + +++TD L HL LT L+ L+L C I D GL +LT L L+
Sbjct: 517 LAHLAPLTGLQRLVLSWCDKLTDAGLAHLTPLTALQYLDLSCCEITDAGLAHLTPLTGLQ 576
Query: 304 CLELSD-TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL-DARQI 360
L L Q+ +GL HL+ LT L+ + L S ++D L LA L++L+ L L D R++
Sbjct: 577 HLVLVYCWQLTDAGLAHLTPLTTLQYLYLGSCNRLTDAGLAHLAPLTALQHLALNDCRKL 636
Query: 361 TDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
TDTGLA LT LT L HL L ++TD G A+L+ L+ L++ +TDAG+ H+ L
Sbjct: 637 TDTGLAHLTPLTALQHLTLNRCEKLTDDGLAHLKPLAALQYLDLSYCEITDAGLAHLTHL 696
Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
+L L+L +TD LE L +L + R
Sbjct: 697 MALQRLDLYGR-EITDDGLERFETLAASFNLEIRLDRF 733
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 142/385 (36%), Positives = 194/385 (50%), Gaps = 62/385 (16%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
K+E+LN +TD+ + L NLK L C VTD+G+A+L L L L+L C
Sbjct: 225 KIETLNFSENARLTDAHLLTLKNCKNLKILHFKKCWGVTDAGLAHLTPLTTLQYLDLSDC 284
Query: 215 ------------PVTA--------------ACLDSLSALGSLFYLNLNRCQ-LSDDGCEK 247
P+T A L L+ L +L +LNLNRC+ L D G
Sbjct: 285 EKLTDDGLAHLTPLTGLQHLDLSWCSSLTDAGLAHLTPLTALQHLNLNRCEYLKDAGLAH 344
Query: 248 FSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-------------------- 286
+ + L+ LNL ++TD L HLK LT L+ LNL C
Sbjct: 345 LTPLTGLQHLNLNRCKDLTDAGLSHLKPLTALQHLNLSECWKLTDAGLAHLTPLTALQHL 404
Query: 287 ------GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLS-FTGISD 338
+ D GL +LT L L+ L+LSD Q +GL HL+ LT L+ +NLS + ++D
Sbjct: 405 DLSRCNSLTDAGLAHLTPLTALQHLDLSDCQNFTDAGLAHLTSLTGLQYLNLSEYKNLTD 464
Query: 339 GSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFK 396
L L L++L+ LNL + R+ TD GLA LT LT L HLDL + +TD G A+L
Sbjct: 465 AGLAHLTPLTALQHLNLCNCRKFTDNGLAHLTPLTALQHLDLSHCKNLTDDGLAHLAPLT 524
Query: 397 NLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN-VSN 454
L+ L + LTDAG+ H+ L++L L+LS C +TD L ++ LTGL L V
Sbjct: 525 GLQRLVLSWCDKLTDAGLAHLTPLTALQYLDLS-CCEITDAGLAHLTPLTGLQHLVLVYC 583
Query: 455 SRITSAGLRHLKPLKNLRSLTLESC 479
++T AGL HL PL L+ L L SC
Sbjct: 584 WQLTDAGLAHLTPLTTLQYLYLGSC 608
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 105/214 (49%), Gaps = 32/214 (14%)
Query: 48 WMDVIASQG-------SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
W D + G ++L +DLS ++TD+GL HL + LQ L +C Q++D GL
Sbjct: 533 WCDKLTDAGLAHLTPLTALQYLDLSCCEITDAGLAHLTPLTGLQHLVLVYCWQLTDAGLA 592
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
HL L+ L L N +T GL +L L L+ L
Sbjct: 593 HLTPLTTLQYLYLGSCNRLTD------------------------AGLAHLAPLTALQHL 628
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
+ C +TD+ + L+ LT L+ L ++ C K+TD G+A+LK L L L+L C +T A
Sbjct: 629 ALNDCRKLTDTGLAHLTPLTALQHLTLNRCEKLTDDGLAHLKPLAALQYLDLSYCEITDA 688
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
L L+ L +L L+L +++DDG E+F + +
Sbjct: 689 GLAHLTHLMALQRLDLYGREITDDGLERFETLAA 722
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 61/102 (59%), Gaps = 2/102 (1%)
Query: 382 ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
AR+TD+ L+N KNL+ L G+TDAG+ H+ L++L L+LS LTD L
Sbjct: 235 ARLTDAHLLTLKNCKNLKILHFKKCWGVTDAGLAHLTPLTTLQYLDLSDCEKLTDDGLAH 294
Query: 441 ISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKV 481
++ LTGL L++S S +T AGL HL PL L+ L L C+
Sbjct: 295 LTPLTGLQHLDLSWCSSLTDAGLAHLTPLTALQHLNLNRCEY 336
>gi|46447549|ref|YP_008914.1| hypothetical protein pc1915 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401190|emb|CAF24639.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 683
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 166/438 (37%), Positives = 248/438 (56%), Gaps = 13/438 (2%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+ +TD+ L+ LK+C NL+ L C ++D GL HL L+ L L+ +T G+
Sbjct: 235 AHLTDAHLLVLKNCKNLKVLYLQGCRNLTDAGLAHLTPLTGLQHLNLSWCRNLTDAGLAH 294
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
A L L LDL C + GL +L L L+ L+++ C ITD+ + L+ LT L++L
Sbjct: 295 LAPLTALQYLDLSHCRNLTDTGLAHLTPLTALQHLDLRVCKNITDAGLAHLAPLTALQNL 354
Query: 186 QIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSD 242
+S C +TD+G+AYL L L LNL C +T A L L L +L L L++C L+D
Sbjct: 355 DLSDCGHLTDAGLAYLTPLTALQHLNLYFCFNLTDAGLVHLRPLTALQTLGLSQCWNLTD 414
Query: 243 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC 300
G + + +L+ LNL ++TD L HL LT L+ LNL C + D+GL +L L
Sbjct: 415 TGLAHLTPLTALQHLNLSRCYKLTDAGLAHLTPLTALQHLNLSYCENLTDDGLAHLAPLT 474
Query: 301 NLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA- 357
L+ L LS ++ +GL HL+ LT L+ +NLS ++D L +L L++L+ L+L
Sbjct: 475 ALQYLRLSQCWKLTDAGLAHLTPLTALQHLNLSRCYKLTDAGLARLTPLTALQHLDLKYC 534
Query: 358 RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKH 415
+TD GLA LT L+GL HL L + +TD+G A+L L+ L + LTD G+ H
Sbjct: 535 INLTDAGLARLTPLSGLQHLALTNCKYLTDAGLAHLTLLTALQYLALANCKNLTDVGLAH 594
Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSL 474
+ L++L L+LS+ +LTD L ++ LTGL LN+S R +T AGL HL PL L+ L
Sbjct: 595 LTPLTALQHLDLSECRHLTDAGLAHLTPLTGLQHLNLSWCRNLTDAGLAHLSPLSVLQHL 654
Query: 475 TLESC-KVTANDIKRLQS 491
L C ++T + + R ++
Sbjct: 655 ALSQCSRLTDDGLDRFKT 672
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 153/398 (38%), Positives = 215/398 (54%), Gaps = 15/398 (3%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL + LQ LD + C ++D GL HL L+ L L R IT G+
Sbjct: 286 NLTDAGLAHLAPLTALQYLDLSHCRNLTDTGLAHLTPLTALQHLDLRVCKNITDAGLAHL 345
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
A L L LDL C + GL L L L+ LN+ +C +TD+ + L LT L++L
Sbjct: 346 APLTALQNLDLSDCGHLTDAGLAYLTPLTALQHLNLYFCFNLTDAGLVHLRPLTALQTLG 405
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDD 243
+S C +TD+G+A+L L L LNL C +T A L L+ L +L +LNL+ C+ L+DD
Sbjct: 406 LSQCWNLTDTGLAHLTPLTALQHLNLSRCYKLTDAGLAHLTPLTALQHLNLSYCENLTDD 465
Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
G + + +L+ L L ++TD L HL LT L+ LNL C + D GL LT L
Sbjct: 466 GLAHLAPLTALQYLRLSQCWKLTDAGLAHLTPLTALQHLNLSRCYKLTDAGLARLTPLTA 525
Query: 302 LKCLELSD----TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-D 356
L+ L+L T G + L LSGL +L N + ++D L L L++L+ L L +
Sbjct: 526 LQHLDLKYCINLTDAGLARLTPLSGLQHLALTNCKY--LTDAGLAHLTLLTALQYLALAN 583
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVK 414
+ +TD GLA LT LT L HLDL R +TD+G A+L L+ L + LTDAG+
Sbjct: 584 CKNLTDVGLAHLTPLTALQHLDLSECRHLTDAGLAHLTPLTGLQHLNLSWCRNLTDAGLA 643
Query: 415 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
H+ LS L L LSQ LTD L+ L ++L +
Sbjct: 644 HLSPLSVLQHLALSQCSRLTDDGLDRFKTLATSLNLEI 681
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
++L +DLS +TD+GL HL + LQ L+ ++C ++D GL HL LS L L+ +
Sbjct: 599 TALQHLDLSECRHLTDAGLAHLTPLTGLQHLNLSWCRNLTDAGLAHLSPLSVLQHLALSQ 658
Query: 116 NNAITAQGMKAFAGLINLVKLDLER 140
+ +T G+ F L + L++ R
Sbjct: 659 CSRLTDDGLDRFKTLATSLNLEIVR 683
>gi|46447653|ref|YP_009018.1| hypothetical protein pc2019 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401294|emb|CAF24743.1| hypothetical protein pc2019 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 959
Score = 202 bits (513), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 166/452 (36%), Positives = 242/452 (53%), Gaps = 38/452 (8%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+++TD GL +L+ LQ L+ N C + +D GL HL L +LT L + + IT G+
Sbjct: 352 NNLTDVGLAYLRPLITLQGLNLNSCKKFTDAGLAHLDSLIDLTQLGLAKCHNITDNGLAY 411
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
LI L L+L C ++ GLV+LK L+ L LN+ C+ +TD+ + L+ L L+ L
Sbjct: 412 LRPLIALQGLNLNGCKKLTDAGLVHLKSLVTLTYLNLSQCDDLTDAGLAHLTPLVALQHL 471
Query: 186 QIS---------------------------CSKVTDSGIAYLKGLQKLTLLNLEGCP-VT 217
+S C K+TD G+A+LK L L LNL C +T
Sbjct: 472 DLSFCCYNITDAGLAHLTPLVALQNLDLSFCYKLTDDGLAHLKPLVALKQLNLWACSNLT 531
Query: 218 AACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGL 275
A L L+ L +L +L+L C L+DDG + +L+ L+L G ++TD L HL L
Sbjct: 532 GAGLAHLTPLIALKHLDLGFCYGLTDDGLAHLKPLVALQYLSLSGCKKLTDAGLAHLTSL 591
Query: 276 TNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF 333
L+ LN+ SC + D+GL +L L L+ L LS ++ GL HL+ L NL ++LS
Sbjct: 592 ITLQQLNISSCANLTDDGLAHLKPLIALQQLNLSSCKKLTGVGLAHLTSLVNLTHLSLSE 651
Query: 334 TG-ISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAA 390
G ++D L LA L +L+ L+L+ +TD GLA L +L L L L +TD+G A
Sbjct: 652 CGNLTDAGLAHLAPLVALQQLDLNFCYNLTDAGLAHLITLVALQQLYLSACGNLTDAGLA 711
Query: 391 YLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 449
+L L+ L + G LT G+ H+ L++LT L+LS NLTD L ++ L L
Sbjct: 712 HLTPLVALQQLNLSGCKKLTGVGLAHLTSLATLTHLSLSACANLTDDGLAHLTTLVALTY 771
Query: 450 LNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 480
LN+S+ + T AGL HLKPL L+ L+L CK
Sbjct: 772 LNLSDCNNFTGAGLTHLKPLVALQYLSLSGCK 803
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 161/449 (35%), Positives = 240/449 (53%), Gaps = 37/449 (8%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL LQ+LD +FC +++D GL HL+ L L L+ + +T G+
Sbjct: 479 NITDAGLAHLTPLVALQNLDLSFCYKLTDDGLAHLKPLVALKQLNLWACSNLTGAGLAHL 538
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
LI L LDL C + GL +LK L+ L+ L++ C +TD+ + L+ L L+ L
Sbjct: 539 TPLIALKHLDLGFCYGLTDDGLAHLKPLVALQYLSLSGCKKLTDAGLAHLTSLITLQQLN 598
Query: 187 I-SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
I SC+ +TD G+A+LK L L LNL C +T L L++L +L +L+L+ C L+D
Sbjct: 599 ISSCANLTDDGLAHLKPLIALQQLNLSSCKKLTGVGLAHLTSLVNLTHLSLSECGNLTDA 658
Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN 301
G + + +L+ L+L F +TD L HL L L+ L L +CG + D GL +LT L
Sbjct: 659 GLAHLAPLVALQQLDLNFCYNLTDAGLAHLITLVALQQLYLSACGNLTDAGLAHLTPLVA 718
Query: 302 LKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD--- 356
L+ L LS ++ GL HL+ L L ++LS ++D L L L +L LNL
Sbjct: 719 LQQLNLSGCKKLTGVGLAHLTSLATLTHLSLSACANLTDDGLAHLTTLVALTYLNLSDCN 778
Query: 357 -----------------------ARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL 392
+++TD GLA L L L L+L G +ITD+G +L
Sbjct: 779 NFTGAGLTHLKPLVALQYLSLSGCKKLTDAGLAYLKPLVALQQLNLRGCKKITDAGLTHL 838
Query: 393 RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
+ L+ L + G LTD G+ H+K L +LT L+L + LTD L ++ L L LN
Sbjct: 839 MSLVALQCLSLSGCKKLTDDGLAHLKPLVALTHLSLGECVKLTDDGLAHLTPLLALTHLN 898
Query: 452 VSN-SRITSAGLRHLKPLKNLRSLTLESC 479
+S+ + +T AGL HL PL+NL + L +C
Sbjct: 899 LSDCNNLTVAGLAHLTPLENLTYVDLNNC 927
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 170/450 (37%), Positives = 241/450 (53%), Gaps = 21/450 (4%)
Query: 51 VIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLT 109
+IA QG ++L+G +TD+GL+HLK L L+ + C ++D GL HL L L
Sbjct: 415 LIALQG-----LNLNGCKKLTDAGLVHLKSLVTLTYLNLSQCDDLTDAGLAHLTPLVALQ 469
Query: 110 SL--SFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN 166
L SF N IT G+ L+ L LDL C ++ GL +LK L+ L+ LN+ C+
Sbjct: 470 HLDLSFCCYN-ITDAGLAHLTPLVALQNLDLSFCYKLTDDGLAHLKPLVALKQLNLWACS 528
Query: 167 CITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSL 224
+T + + L+ L LK L + C +TD G+A+LK L L L+L GC +T A L L
Sbjct: 529 NLTGAGLAHLTPLIALKHLDLGFCYGLTDDGLAHLKPLVALQYLSLSGCKKLTDAGLAHL 588
Query: 225 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLN 282
++L +L LN++ C L+DDG + +L+ LNL ++T L HL L NL L+
Sbjct: 589 TSLITLQQLNISSCANLTDDGLAHLKPLIALQQLNLSSCKKLTGVGLAHLTSLVNLTHLS 648
Query: 283 LDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTG-ISDG 339
L CG + D GL +L L L+ L+L+ + +GL HL L L+ + LS G ++D
Sbjct: 649 LSECGNLTDAGLAHLAPLVALQQLDLNFCYNLTDAGLAHLITLVALQQLYLSACGNLTDA 708
Query: 340 SLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKN 397
L L L +L+ LNL +++T GLA LTSL LTHL L A +TD G A+L
Sbjct: 709 GLAHLTPLVALQQLNLSGCKKLTGVGLAHLTSLATLTHLSLSACANLTDDGLAHLTTLVA 768
Query: 398 LRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-S 455
L L + T AG+ H+K L +L L+LS LTD L + L L LN+
Sbjct: 769 LTYLNLSDCNNFTGAGLTHLKPLVALQYLSLSGCKKLTDAGLAYLKPLVALQQLNLRGCK 828
Query: 456 RITSAGLRHLKPLKNLRSLTLESCKVTAND 485
+IT AGL HL L L+ L+L CK +D
Sbjct: 829 KITDAGLTHLMSLVALQCLSLSGCKKLTDD 858
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 121/324 (37%), Positives = 173/324 (53%), Gaps = 9/324 (2%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
S +++TD GL HLK LQ L+ + C +++ GL HL L NLT LS +T G+
Sbjct: 601 SCANLTDDGLAHLKPLIALQQLNLSSCKKLTGVGLAHLTSLVNLTHLSLSECGNLTDAGL 660
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
A L+ L +LDL C + GL +L L+ L+ L + C +TD+ + L+ L L+
Sbjct: 661 AHLAPLVALQQLDLNFCYNLTDAGLAHLITLVALQQLYLSACGNLTDAGLAHLTPLVALQ 720
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QL 240
L +S C K+T G+A+L L LT L+L C +T L L+ L +L YLNL+ C
Sbjct: 721 QLNLSGCKKLTGVGLAHLTSLATLTHLSLSACANLTDDGLAHLTTLVALTYLNLSDCNNF 780
Query: 241 SDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 298
+ G + +L+ L+L G ++TD L +LK L L+ LNL C I D GL +L
Sbjct: 781 TGAGLTHLKPLVALQYLSLSGCKKLTDAGLAYLKPLVALQQLNLRGCKKITDAGLTHLMS 840
Query: 299 LCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL- 355
L L+CL LS ++ GL HL L L ++L ++D L L L +L LNL
Sbjct: 841 LVALQCLSLSGCKKLTDDGLAHLKPLVALTHLSLGECVKLTDDGLAHLTPLLALTHLNLS 900
Query: 356 DARQITDTGLAALTSLTGLTHLDL 379
D +T GLA LT L LT++DL
Sbjct: 901 DCNNLTVAGLAHLTPLENLTYVDL 924
>gi|46446659|ref|YP_008024.1| hypothetical protein pc1025 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400300|emb|CAF23749.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 695
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 163/420 (38%), Positives = 225/420 (53%), Gaps = 32/420 (7%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LK+C NL+ L C ++D GL HL L+ L L+ + +T G+ A
Sbjct: 238 LTDAHLLILKNCKNLKVLHLEKCRALTDDGLAHLTPLTALQYLNLSASYNLTDAGLVHLA 297
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L KL+L R ++ GL +LK L L+ L++ +C +TD + L LT L+ L +
Sbjct: 298 PLTALQKLNLGRYNQLTDAGLAHLKPLTALQRLDLSFCEDLTDDGLAHLRPLTALQRLDL 357
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGC 245
C K+TD G+ +L+ L L LNL C T A L LS L L +LNL C L+D G
Sbjct: 358 RYCEKLTDDGLVHLRPLTALQRLNLSNCWHTGAGLSHLSPLTGLQHLNLYECINLTDAGL 417
Query: 246 EKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
+ L+ LNL + +E+TD LVHLK LT L+ LNL +C NLT
Sbjct: 418 VHLKLLTGLQHLNLSYCDELTDAGLVHLKLLTGLQHLNLSNCN-------NLT------- 463
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITD 362
+GL HL LT L+ +NLS+ ++D L L L+ L+ LNL + +TD
Sbjct: 464 ---------DAGLVHLKFLTGLQHLNLSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTD 514
Query: 363 TGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLS 420
GLA LT LTGL HLDL + +++TD G A+L+ L+ L + LTDAG+ H+K L+
Sbjct: 515 AGLAHLTPLTGLQHLDLSYCSKLTDDGLAHLKPLTALQCLNLSNCRNLTDAGLVHLKLLT 574
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 479
L LNLS NLTD L + L L L + +T AGL HL PL L+ L L C
Sbjct: 575 GLQHLNLSDYKNLTDDGLIHLMPLMALRHLELLGCENLTDAGLVHLTPLTALQHLNLSHC 634
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 159/413 (38%), Positives = 229/413 (55%), Gaps = 11/413 (2%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD GL HL + LQ L+ + ++D GL HL L+ L L+ R N +T G+
Sbjct: 263 LTDDGLAHLTPLTALQYLNLSASYNLTDAGLVHLAPLTALQKLNLGRYNQLTDAGLAHLK 322
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L +LDL C + GL +L+ L L+ L++++C +TD + L LT L+ L +
Sbjct: 323 PLTALQRLDLSFCEDLTDDGLAHLRPLTALQRLDLRYCEKLTDDGLVHLRPLTALQRLNL 382
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGC 245
S T +G+++L L L LNL C +T A L L L L +LNL+ C +L+D G
Sbjct: 383 SNCWHTGAGLSHLSPLTGLQHLNLYECINLTDAGLVHLKLLTGLQHLNLSYCDELTDAGL 442
Query: 246 EKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLK 303
+ L+ LNL N +TD LVHLK LT L+ LNL C + D GLV+L L L+
Sbjct: 443 VHLKLLTGLQHLNLSNCNNLTDAGLVHLKFLTGLQHLNLSYCDELTDAGLVHLKLLTGLQ 502
Query: 304 CLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQI 360
L LS+ + +GL HL+ LT L+ ++LS+ + ++D L L L++L+ LNL + R +
Sbjct: 503 HLNLSNCNNLTDAGLAHLTPLTGLQHLDLSYCSKLTDDGLAHLKPLTALQCLNLSNCRNL 562
Query: 361 TDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKD 418
TD GL L LTGL HL+L + +TD G +L LR LE+ G LTDAG+ H+
Sbjct: 563 TDAGLVHLKLLTGLQHLNLSDYKNLTDDGLIHLMPLMALRHLELLGCENLTDAGLVHLTP 622
Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKN 470
L++L LNLS +LTD L ++ LTGL L + +T AGL K + N
Sbjct: 623 LTALQHLNLSHCDDLTDAGLAHLTSLTGLQHLELLGCENLTDAGLARFKTVAN 675
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 141/365 (38%), Positives = 203/365 (55%), Gaps = 10/365 (2%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+ +TD+GL HLK + LQ LD +FC ++D GL HLR L+ L L R +T G+
Sbjct: 311 NQLTDAGLAHLKPLTALQRLDLSFCEDLTDDGLAHLRPLTALQRLDLRYCEKLTDDGLVH 370
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L L +L+L C GL +L L L+ LN+ C +TD+ + L LT L+ L
Sbjct: 371 LRPLTALQRLNLSNCWHTGAGLSHLSPLTGLQHLNLYECINLTDAGLVHLKLLTGLQHLN 430
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
+S C ++TD+G+ +LK L L LNL C +T A L L L L +LNL+ C +L+D
Sbjct: 431 LSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDAGLVHLKFLTGLQHLNLSYCDELTDA 490
Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN 301
G + L+ LNL N +TD L HL LT L+ L+L C + D+GL +L L
Sbjct: 491 GLVHLKLLTGLQHLNLSNCNNLTDAGLAHLTPLTGLQHLDLSYCSKLTDDGLAHLKPLTA 550
Query: 302 LKCLELSDTQ-VGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLN-LDAR 358
L+CL LS+ + + +GL HL LT L+ +NLS + ++D L L L +L+ L L
Sbjct: 551 LQCLNLSNCRNLTDAGLVHLKLLTGLQHLNLSDYKNLTDDGLIHLMPLMALRHLELLGCE 610
Query: 359 QITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI 416
+TD GL LT LT L HL+L +TD+G A+L + L+ LE+ G LTDAG+
Sbjct: 611 NLTDAGLVHLTPLTALQHLNLSHCDDLTDAGLAHLTSLTGLQHLELLGCENLTDAGLARF 670
Query: 417 KDLSS 421
K +++
Sbjct: 671 KTVAN 675
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 189/335 (56%), Gaps = 10/335 (2%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 214
K+E LN +TD+ + L NLK L + C +TD G+A+L L L LNL
Sbjct: 226 KIEGLNFSNNRYLTDAHLLILKNCKNLKVLHLEKCRALTDDGLAHLTPLTALQYLNLSAS 285
Query: 215 P-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVH 271
+T A L L+ L +L LNL R QL+D G + +L+ L+L F E +TD+ L H
Sbjct: 286 YNLTDAGLVHLAPLTALQKLNLGRYNQLTDAGLAHLKPLTALQRLDLSFCEDLTDDGLAH 345
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
L+ LT L+ L+L C + D+GLV+L L L+ L LS+ +GL HLS LT L+ +N
Sbjct: 346 LRPLTALQRLDLRYCEKLTDDGLVHLRPLTALQRLNLSNCWHTGAGLSHLSPLTGLQHLN 405
Query: 331 L-SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR-ITDS 387
L ++D L L L+ L+ LNL ++TD GL L LTGL HL+L +TD+
Sbjct: 406 LYECINLTDAGLVHLKLLTGLQHLNLSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDA 465
Query: 388 GAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 446
G +L+ L+ L + LTDAG+ H+K L+ L LNLS NLTD L ++ LTG
Sbjct: 466 GLVHLKFLTGLQHLNLSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDAGLAHLTPLTG 525
Query: 447 LVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 480
L L++S S++T GL HLKPL L+ L L +C+
Sbjct: 526 LQHLDLSYCSKLTDDGLAHLKPLTALQCLNLSNCR 560
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 137/355 (38%), Positives = 198/355 (55%), Gaps = 20/355 (5%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTDSGIAYLKGLQ 204
L+ LK L+ L+++ C +TD + L+ LT L+ L +S S +TD+G+ +L L
Sbjct: 241 AHLLILKNCKNLKVLHLEKCRALTDDGLAHLTPLTALQYLNLSASYNLTDAGLVHLAPLT 300
Query: 205 KLTLLNL-EGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFN 262
L LNL +T A L L L +L L+L+ C+ L+DDG + +L+ L+L +
Sbjct: 301 ALQKLNLGRYNQLTDAGLAHLKPLTALQRLDLSFCEDLTDDGLAHLRPLTALQRLDLRYC 360
Query: 263 E-ITDECLVHLKGLTNLESLNLDSC---GIGDEGLVNLTGLCNL---KCLELSDTQVGSS 315
E +TD+ LVHL+ LT L+ LNL +C G G L LTGL +L +C+ L+D +
Sbjct: 361 EKLTDDGLVHLRPLTALQRLNLSNCWHTGAGLSHLSPLTGLQHLNLYECINLTD-----A 415
Query: 316 GLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTG 373
GL HL LT L+ +NLS+ ++D L L L+ L+ LNL + +TD GL L LTG
Sbjct: 416 GLVHLKLLTGLQHLNLSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDAGLVHLKFLTG 475
Query: 374 LTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNC 431
L HL+L + +TD+G +L+ L+ L + LTDAG+ H+ L+ L L+LS
Sbjct: 476 LQHLNLSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDAGLAHLTPLTGLQHLDLSYCS 535
Query: 432 NLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCKVTAND 485
LTD L + LT L LN+SN R +T AGL HLK L L+ L L K +D
Sbjct: 536 KLTDDGLAHLKPLTALQCLNLSNCRNLTDAGLVHLKLLTGLQHLNLSDYKNLTDD 590
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 4/105 (3%)
Query: 384 ITDSGAAYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
+TD+ L+N KNL+ LE C LTD G+ H+ L++L LNLS + NLTD L +
Sbjct: 238 LTDAHLLILKNCKNLKVLHLEKCRA-LTDDGLAHLTPLTALQYLNLSASYNLTDAGLVHL 296
Query: 442 SGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 485
+ LT L LN+ +++T AGL HLKPL L+ L L C+ +D
Sbjct: 297 APLTALQKLNLGRYNQLTDAGLAHLKPLTALQRLDLSFCEDLTDD 341
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 8/112 (7%)
Query: 33 LQDLCLGQYPGVND----KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF 88
LQ L L Y + D M ++A + LL + ++TD+GL+HL + LQ L+
Sbjct: 576 LQHLNLSDYKNLTDDGLIHLMPLMALRHLELLGCE----NLTDAGLVHLTPLTALQHLNL 631
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+ C ++D GL HL L+ L L +T G+ F + N + L ++R
Sbjct: 632 SHCDDLTDAGLAHLTSLTGLQHLELLGCENLTDAGLARFKTVANSLYLIIKR 683
>gi|46446831|ref|YP_008196.1| hypothetical protein pc1197 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400472|emb|CAF23921.1| hypothetical protein pc1197 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 666
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 159/432 (36%), Positives = 242/432 (56%), Gaps = 11/432 (2%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LK+C NL+ L F C I+D GL HL L++L L+ + IT G+
Sbjct: 197 LTDAHLLALKNCKNLKILHFKNCRVITDAGLAHLTPLTSLQRLNLSKLWCITDAGLAHLT 256
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L LDL +C+++ GL +L L L+ L + +C +TD+ + L+ LT L+ L +
Sbjct: 257 TLKALQHLDLSQCSKLTDDGLAHLTPLTALQHLGLNYCENLTDAGLAHLTLLTGLQHLDL 316
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDG 244
S C +TD+G+A+L L L L+L C +T A L L++L L +L+L+ C+ L+D G
Sbjct: 317 SNCKNLTDAGLAHLTSLMALQHLDLSWCLKLTDAGLAHLTSLTGLQHLDLSNCKNLTDAG 376
Query: 245 CEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
+ + +L+ LNL + ++TD L HL LT L+ LNL + GL +LT L L+
Sbjct: 377 LAHLTSLMALQHLNLSWCLKLTDAGLAHLTPLTALQHLNLSRYNLTYAGLAHLTSLTGLQ 436
Query: 304 CLELSDT-QVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDARQ-I 360
L+LS + ++ +GL HL L L+ +NL+ ++D L L+ L +L++L L Q +
Sbjct: 437 HLDLSGSRKLIDAGLAHLRPLVALQHLNLTGCWKLTDAGLAHLSPLKALQTLGLSWCQNL 496
Query: 361 TDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKD 418
T GLA L L L +LDL +TD+G A+LR L+ L + G LTDAG+ H+
Sbjct: 497 TGAGLAHLKPLVALQYLDLSNCNNLTDAGLAHLRPLVALQHLNLTGCWKLTDAGLAHLTS 556
Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLE 477
L +L LNLS LTD L + L L L++SN + +T GL HL+PL L+ L L
Sbjct: 557 LMALQHLNLSWCLKLTDAGLAHLKPLVALQHLDLSNCNNLTDEGLTHLRPLVALQHLNLS 616
Query: 478 SCKVTANDIKRL 489
+T + + L
Sbjct: 617 RYNLTDDGLAHL 628
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 155/421 (36%), Positives = 228/421 (54%), Gaps = 38/421 (9%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DLS S +TD GL HL + LQ L N+C ++D GL HL L+ L
Sbjct: 260 ALQHLDLSQCSKLTDDGLAHLTPLTALQHLGLNYCENLTDAGLAHLTLLTGLQ------- 312
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
LDL C + GL +L LM L+ L++ WC +TD+ +
Sbjct: 313 ------------------HLDLSNCKNLTDAGLAHLTSLMALQHLDLSWCLKLTDAGLAH 354
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYL 233
L+ LT L+ L +S C +TD+G+A+L L L LNL C +T A L L+ L +L +L
Sbjct: 355 LTSLTGLQHLDLSNCKNLTDAGLAHLTSLMALQHLNLSWCLKLTDAGLAHLTPLTALQHL 414
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDE 291
NL+R L+ G + + L+ L+L G ++ D L HL+ L L+ LNL C + D
Sbjct: 415 NLSRYNLTYAGLAHLTSLTGLQHLDLSGSRKLIDAGLAHLRPLVALQHLNLTGCWKLTDA 474
Query: 292 GLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSS 349
GL +L+ L L+ L LS Q + +GL HL L L+ ++LS ++D L L L +
Sbjct: 475 GLAHLSPLKALQTLGLSWCQNLTGAGLAHLKPLVALQYLDLSNCNNLTDAGLAHLRPLVA 534
Query: 350 LKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-G 406
L+ LNL ++TD GLA LTSL L HL+L + ++TD+G A+L+ L+ L++
Sbjct: 535 LQHLNLTGCWKLTDAGLAHLTSLMALQHLNLSWCLKLTDAGLAHLKPLVALQHLDLSNCN 594
Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHL 465
LTD G+ H++ L +L LNLS+ NLTD L ++ LT L L++S+ +T AGL H
Sbjct: 595 NLTDEGLTHLRPLVALQHLNLSR-YNLTDDGLAHLTPLTTLQYLDLSSCYNLTDAGLAHF 653
Query: 466 K 466
K
Sbjct: 654 K 654
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 131/357 (36%), Positives = 195/357 (54%), Gaps = 11/357 (3%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
+ L +DLS ++TD+GL HL LQ LD ++C++++D GL HL L+ L L
Sbjct: 309 TGLQHLDLSNCKNLTDAGLAHLTSLMALQHLDLSWCLKLTDAGLAHLTSLTGLQHLDLSN 368
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+T G+ L+ L L+L C ++ GL +L L L+ LN+ N +T + +
Sbjct: 369 CKNLTDAGLAHLTSLMALQHLNLSWCLKLTDAGLAHLTPLTALQHLNLSRYN-LTYAGLA 427
Query: 175 PLSGLTNLKSLQISCS-KVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFY 232
L+ LT L+ L +S S K+ D+G+A+L+ L L LNL GC +T A L LS L +L
Sbjct: 428 HLTSLTGLQHLDLSGSRKLIDAGLAHLRPLVALQHLNLTGCWKLTDAGLAHLSPLKALQT 487
Query: 233 LNLNRCQ-LSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSCG-IG 289
L L+ CQ L+ G + +L+ L+L N +TD L HL+ L L+ LNL C +
Sbjct: 488 LGLSWCQNLTGAGLAHLKPLVALQYLDLSNCNNLTDAGLAHLRPLVALQHLNLTGCWKLT 547
Query: 290 DEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGL 347
D GL +LT L L+ L LS ++ +GL HL L L+ ++LS ++D L L L
Sbjct: 548 DAGLAHLTSLMALQHLNLSWCLKLTDAGLAHLKPLVALQHLDLSNCNNLTDEGLTHLRPL 607
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 403
+L+ LNL +TD GLA LT LT L +LDL +TD+G A+ + +L+I
Sbjct: 608 VALQHLNLSRYNLTDDGLAHLTPLTTLQYLDLSSCYNLTDAGLAHFKTVAASLNLKI 664
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 97/253 (38%), Positives = 140/253 (55%), Gaps = 7/253 (2%)
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEG 292
N L+D +LK+L+ ITD L HL LT+L+ LNL I D G
Sbjct: 192 FNNIYLTDAHLLALKNCKNLKILHFKNCRVITDAGLAHLTPLTSLQRLNLSKLWCITDAG 251
Query: 293 LVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSL 350
L +LT L L+ L+LS +++ GL HL+ LT L+ + L++ ++D L L L+ L
Sbjct: 252 LAHLTTLKALQHLDLSQCSKLTDDGLAHLTPLTALQHLGLNYCENLTDAGLAHLTLLTGL 311
Query: 351 KSLNL-DARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GG 407
+ L+L + + +TD GLA LTSL L HLDL + ++TD+G A+L + L+ L++
Sbjct: 312 QHLDLSNCKNLTDAGLAHLTSLMALQHLDLSWCLKLTDAGLAHLTSLTGLQHLDLSNCKN 371
Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 467
LTDAG+ H+ L +L LNLS LTD L ++ LT L LN+S +T AGL HL
Sbjct: 372 LTDAGLAHLTSLMALQHLNLSWCLKLTDAGLAHLTPLTALQHLNLSRYNLTYAGLAHLTS 431
Query: 468 LKNLRSLTLESCK 480
L L+ L L +
Sbjct: 432 LTGLQHLDLSGSR 444
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/240 (39%), Positives = 136/240 (56%), Gaps = 9/240 (3%)
Query: 261 FNEI--TDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ-VGSSG 316
FN I TD L+ LK NL+ L+ +C I D GL +LT L +L+ L LS + +G
Sbjct: 192 FNNIYLTDAHLLALKNCKNLKILHFKNCRVITDAGLAHLTPLTSLQRLNLSKLWCITDAG 251
Query: 317 LRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGL 374
L HL+ L L+ ++LS + ++D L L L++L+ L L+ +TD GLA LT LTGL
Sbjct: 252 LAHLTTLKALQHLDLSQCSKLTDDGLAHLTPLTALQHLGLNYCENLTDAGLAHLTLLTGL 311
Query: 375 THLDLFGAR-ITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCN 432
HLDL + +TD+G A+L + L+ L++ LTDAG+ H+ L+ L L+LS N
Sbjct: 312 QHLDLSNCKNLTDAGLAHLTSLMALQHLDLSWCLKLTDAGLAHLTSLTGLQHLDLSNCKN 371
Query: 433 LTDKTLELISGLTGLVSLNVSNS-RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 491
LTD L ++ L L LN+S ++T AGL HL PL L+ L L +T + L S
Sbjct: 372 LTDAGLAHLTSLMALQHLNLSWCLKLTDAGLAHLTPLTALQHLNLSRYNLTYAGLAHLTS 431
>gi|348682865|gb|EGZ22681.1| hypothetical protein PHYSODRAFT_491927 [Phytophthora sojae]
Length = 648
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 164/516 (31%), Positives = 254/516 (49%), Gaps = 27/516 (5%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMD-VIASQGSSLL 60
LP +++ + L L + +A L + L GV D W D V + L
Sbjct: 142 LPPELAASVLQWLKRHYVLDKPQFQALAPFLLLEWSLADLQGVEDSWFDGVPQTTLQQLK 201
Query: 61 SVDLSGSDVTDSGLIHLKDC-----------SNLQSLDFNFCIQISDGGLEHLRGLSNLT 109
S+D+SG IHL L + F C ++ +E LR + L
Sbjct: 202 SIDVSGC-------IHLHQLGAEWGYATTKLPELLAASFQGCTGLTKESIEMLRFSTKLA 254
Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCI 168
+L+ + + +KA + L L L L C ++ G+ L + KLE L I C +
Sbjct: 255 ALNLSGCVNVDDKSLKALSELEQLTSLQLVGCRKLTDKGVKYLAKMAKLEKLRIARCRKL 314
Query: 169 TDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSA 226
TD+ ++ + + L+ L ++ ++++ + Y+ ++ L +L + GC + + SLS
Sbjct: 315 TDAALEDFAMMFPKLRELDVANCRLSEKALQYIGQIKSLEVLVIRGCQDICDDGMSSLSG 374
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
L +L Y + C ++++ L+VL LG+ + L+ LTNL L L C
Sbjct: 375 LANLKYFDARHCSKIHSIPTEWTQ---LEVLLLGYTAFAESDAAVLQYLTNLHELELRKC 431
Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLA 345
I G ++ L +L+ LEL +T + SGL + + +L+++N+S T ISD LA
Sbjct: 432 RIMKRGFQFISRLTHLERLELGETALTDSGLLEICNSAKSLKALNISNTEISDNGAAGLA 491
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
L L+ L LD IT+ LA L+ L L LDLFGA ITD+G +L L+ L ICG
Sbjct: 492 KLKELRILRLDTPGITNRALANLSFLARLERLDLFGANITDNGLMHLVPLHKLQELSICG 551
Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
G + D GV I L+SLT LNLSQN N+ K+L + LTGL LN+SN+ I++ LRHL
Sbjct: 552 GNIGDRGVGLISKLTSLTSLNLSQNRNIRTKSLFYLRALTGLRCLNLSNTGISALSLRHL 611
Query: 466 KPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 501
LK L+SL++ C ++ I L+ LP L R
Sbjct: 612 SSLKELQSLSVYGCSLSQGHIDVLRE-ILPELKCLR 646
>gi|298709085|emb|CBJ31033.1| Hypothetical leucine rich repeat protein [Ectocarpus siliculosus]
Length = 573
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 179/556 (32%), Positives = 264/556 (47%), Gaps = 62/556 (11%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQ---GSS 58
LPR++ + L R L+ +L AFRDC + L LG+ GV + W+ + G
Sbjct: 22 LPREVVDALLGSLTQHRALSSYALRAFRDCEVTSLALGECRGVRNGWVRELLQATPCGRC 81
Query: 59 LLSVDLSG-SDVTDSGL-----------IHLKDCSNL--------------QSLDFNFCI 92
++++DLS + +TD+GL L+ CS L ++L C
Sbjct: 82 IVTLDLSSCTGLTDTGLSDLPALKSLESASLRRCSGLGTEATLCLSNSPGLETLSLAHCP 141
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-L 151
+ D + +L GLS L SL I+ +G++ L +L L+ RC HG V+ L
Sbjct: 142 LLDDAAVGNLAGLSRLRSLELEGCENISDEGLRLACRLPSLTCLNASRC---HGLTVDGL 198
Query: 152 KGLMK----LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA--------- 198
GL + L+ LN+ WC + + G +
Sbjct: 199 AGLEQAAGGLKRLNLGWCAGLVRGSAAAGGRGGEESDDEDDEDDEDGGGDSDDEGLGGGR 258
Query: 199 --------YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC---QLSDDGCEK 247
L L KL + L + L LSA GS +L+ C +L++ G
Sbjct: 259 RRRRRGRWVLPVLPKLERVCLARSGIGNEGLSRLSA-GSPLLRDLDLCGCVRLTESGAHT 317
Query: 248 FSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
S + L+ L+L N C+ L + L L +LNLD C +GD G+ L+ L L+ L
Sbjct: 318 LSALQDLETLDLS-NCRVYSCVEELAQKLPGLTALNLDRCNVGDTGVRALSSLTKLERLN 376
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
L+DT + +G+ HL+ LT L +NL F I+D L LA LS+L LNLD R + D G+
Sbjct: 377 LADTSITDAGMTHLAPLTRLRDLNLFFCHITDAGLGPLAALSNLVRLNLDTRDVGDAGMV 436
Query: 367 ALTSLTGLTHLDLFGARITDSGAAY-LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
LT L L LD+F A ITD G A+ L L +LE+C G LTD G+ H+ + SLT L
Sbjct: 437 QLTRLRLLESLDVFSASITDFGVAHGLCRLPCLTTLEVCSGRLTDRGLYHLSRVKSLTRL 496
Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 485
N+SQN +T + + LT L SLN+S+ IT + L L L NL SL++ C++ D
Sbjct: 497 NVSQNFGITAAGVRHVGTLTRLRSLNLSSCNITPSSLNSLTGLVNLESLSVFGCRLEMTD 556
Query: 486 IKRLQSRDLPNLVSFR 501
++ L+ + LPNL R
Sbjct: 557 LELLREK-LPNLRVVR 571
>gi|46446377|ref|YP_007742.1| hypothetical protein pc0743 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400018|emb|CAF23467.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 765
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 170/476 (35%), Positives = 257/476 (53%), Gaps = 15/476 (3%)
Query: 13 ELVYSR--CLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDV 69
EL +S+ LT+ L A ++C L+ L L + D + + ++L +DLSG ++
Sbjct: 262 ELNFSKNAHLTDAHLLALKNCENLKVLNLQACHNLTDAGLAHLTPL-AALKHLDLSGCEL 320
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
TD GL+HL + LQ LD + C +D GL HL+ L L L+ +T G+
Sbjct: 321 TDDGLVHLTPLAALQHLDLSHCRNFTDAGLAHLKLLVALQHLNLSHCGKLTDAGLAHLKL 380
Query: 130 LINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L+ L LDL C GL +LK L+ L+ LN+ +C +TD+ + L+ L L+ L ++
Sbjct: 381 LVALQHLDLSHCRNFTDAGLAHLKLLVALQHLNLSYCGNLTDAGLAHLTPLMALQHLDLN 440
Query: 189 -CSKVTDSGIAYLKGLQKLTLLNLE-GCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGC 245
C +TD+G+ +L L L LNL T A L L+ L +L +LNL+ C +D G
Sbjct: 441 GCHNLTDAGLTHLTSLVVLQYLNLSWNYNFTDAGLAHLTPLMALQHLNLSYCGNFTDAGL 500
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKC 304
+ + +LK L+L E+TD+ L HLK L L+ LNL CG + D+GL +L L L+
Sbjct: 501 AHLTSLAALKHLDLIGCELTDDGLAHLKLLVALQHLNLSYCGKLTDDGLAHLKLLVALQH 560
Query: 305 LELSD-TQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQIT 361
L+LS ++ +GL HL L L+ +NLS G ++D L L L++L+ L+L ++T
Sbjct: 561 LDLSGCDKLTGAGLAHLKFLVALQHLNLSHCGKLTDDGLVNLTPLAALRHLDLSHCGKLT 620
Query: 362 DTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDL 419
GLA L L L HL+L ++TD+G L L+ L++ G LTDAG+ ++ L
Sbjct: 621 GAGLAHLKFLVALQHLNLSHCGKLTDAGLVNLSPLMALQHLDLSHCGNLTDAGLVNLSPL 680
Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSL 474
+L L+LS NLTD L + L L L++S+ +T GL HL PL L+ L
Sbjct: 681 MALQHLDLSHCGNLTDDGLVNLKFLVALQHLDLSHCGNLTDDGLAHLSPLIALQHL 736
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 159/448 (35%), Positives = 221/448 (49%), Gaps = 60/448 (13%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+ +TD+ L+ LK+C NL+ L+ C ++D GL HL L+ L
Sbjct: 269 AHLTDAHLLALKNCENLKVLNLQACHNLTDAGLAHLTPLAALK----------------- 311
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
LDL C GLV+L L L+ L++ C TD+ + L L L+ L
Sbjct: 312 --------HLDLSGCELTDDGLVHLTPLAALQHLDLSHCRNFTDAGLAHLKLLVALQHLN 363
Query: 187 IS-CSKVTDSGIAYLK---GLQKLTL----------------------LNLEGC-PVTAA 219
+S C K+TD+G+A+LK LQ L L LNL C +T A
Sbjct: 364 LSHCGKLTDAGLAHLKLLVALQHLDLSHCRNFTDAGLAHLKLLVALQHLNLSYCGNLTDA 423
Query: 220 CLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTN 277
L L+ L +L +L+LN C L+D G + + L+ LNL +N TD L HL L
Sbjct: 424 GLAHLTPLMALQHLDLNGCHNLTDAGLTHLTSLVVLQYLNLSWNYNFTDAGLAHLTPLMA 483
Query: 278 LESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG- 335
L+ LNL CG D GL +LT L LK L+L ++ GL HL L L+ +NLS+ G
Sbjct: 484 LQHLNLSYCGNFTDAGLAHLTSLAALKHLDLIGCELTDDGLAHLKLLVALQHLNLSYCGK 543
Query: 336 ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLR 393
++D L L L +L+ L+L ++T GLA L L L HL+L ++TD G L
Sbjct: 544 LTDDGLAHLKLLVALQHLDLSGCDKLTGAGLAHLKFLVALQHLNLSHCGKLTDDGLVNLT 603
Query: 394 NFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
LR L++ G LT AG+ H+K L +L LNLS LTD L +S L L L++
Sbjct: 604 PLAALRHLDLSHCGKLTGAGLAHLKFLVALQHLNLSHCGKLTDAGLVNLSPLMALQHLDL 663
Query: 453 SN-SRITSAGLRHLKPLKNLRSLTLESC 479
S+ +T AGL +L PL L+ L L C
Sbjct: 664 SHCGNLTDAGLVNLSPLMALQHLDLSHC 691
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 181/332 (54%), Gaps = 10/332 (3%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DL+G ++TD+GL HL LQ L+ ++ +D GL HL L L L+
Sbjct: 433 ALQHLDLNGCHNLTDAGLTHLTSLVVLQYLNLSWNYNFTDAGLAHLTPLMALQHLNLSYC 492
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
T G+ L L LDL C GL +LK L+ L+ LN+ +C +TD + L
Sbjct: 493 GNFTDAGLAHLTSLAALKHLDLIGCELTDDGLAHLKLLVALQHLNLSYCGKLTDDGLAHL 552
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLN 234
L L+ L +S C K+T +G+A+LK L L LNL C +T L +L+ L +L +L+
Sbjct: 553 KLLVALQHLDLSGCDKLTGAGLAHLKFLVALQHLNLSHCGKLTDDGLVNLTPLAALRHLD 612
Query: 235 LNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDE 291
L+ C +L+ G + +L+ LNL ++TD LV+L L L+ L+L CG + D
Sbjct: 613 LSHCGKLTGAGLAHLKFLVALQHLNLSHCGKLTDAGLVNLSPLMALQHLDLSHCGNLTDA 672
Query: 292 GLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSS 349
GLVNL+ L L+ L+LS + GL +L L L+ ++LS G ++D L L+ L +
Sbjct: 673 GLVNLSPLMALQHLDLSHCGNLTDDGLVNLKFLVALQHLDLSHCGNLTDDGLAHLSPLIA 732
Query: 350 LKSLNLDAR-QITD-TGLAALTSLTGLTHLDL 379
L+ L+ +TD +GLA LTSL L HLDL
Sbjct: 733 LQHLDRSKYNNLTDGSGLAHLTSLVDLQHLDL 764
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 109/308 (35%), Positives = 159/308 (51%), Gaps = 30/308 (9%)
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+ +TD+ + LK + L +LNL+ C +T A L L+ L +L +L+L+ C+L+DDG
Sbjct: 269 AHLTDAHLLALKNCENLKVLNLQACHNLTDAGLAHLTPLAALKHLDLSGCELTDDGLVHL 328
Query: 249 SKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLE 306
+ + +L+ L+L TD L HLK L L+ LNL CG + D GL +L L L+ L+
Sbjct: 329 TPLAALQHLDLSHCRNFTDAGLAHLKLLVALQHLNLSHCGKLTDAGLAHLKLLVALQHLD 388
Query: 307 LSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
LS + +GL HL L L+ +NLS+ G +TD GL
Sbjct: 389 LSHCRNFTDAGLAHLKLLVALQHLNLSYCG-----------------------NLTDAGL 425
Query: 366 AALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLT 423
A LT L L HLDL G +TD+G +L + L+ L + TDAG+ H+ L +L
Sbjct: 426 AHLTPLMALQHLDLNGCHNLTDAGLTHLTSLVVLQYLNLSWNYNFTDAGLAHLTPLMALQ 485
Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC-KVT 482
LNLS N TD L ++ L L L++ +T GL HLK L L+ L L C K+T
Sbjct: 486 HLNLSYCGNFTDAGLAHLTSLAALKHLDLIGCELTDDGLAHLKLLVALQHLNLSYCGKLT 545
Query: 483 ANDIKRLQ 490
+ + L+
Sbjct: 546 DDGLAHLK 553
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 102/273 (37%), Positives = 156/273 (57%), Gaps = 9/273 (3%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+ TD+GL HL + L+ LD C +++D GL HL+ L L L+ +T G+
Sbjct: 494 NFTDAGLAHLTSLAALKHLDLIGC-ELTDDGLAHLKLLVALQHLNLSYCGKLTDDGLAHL 552
Query: 128 AGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L+ L LDL C ++ G GL +LK L+ L+ LN+ C +TD + L+ L L+ L
Sbjct: 553 KLLVALQHLDLSGCDKLTGAGLAHLKFLVALQHLNLSHCGKLTDDGLVNLTPLAALRHLD 612
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
+S C K+T +G+A+LK L L LNL C +T A L +LS L +L +L+L+ C L+D
Sbjct: 613 LSHCGKLTGAGLAHLKFLVALQHLNLSHCGKLTDAGLVNLSPLMALQHLDLSHCGNLTDA 672
Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN 301
G S + +L+ L+L +TD+ LV+LK L L+ L+L CG + D+GL +L+ L
Sbjct: 673 GLVNLSPLMALQHLDLSHCGNLTDDGLVNLKFLVALQHLDLSHCGNLTDDGLAHLSPLIA 732
Query: 302 LKCLELSDTQ--VGSSGLRHLSGLTNLESINLS 332
L+ L+ S SGL HL+ L +L+ ++LS
Sbjct: 733 LQHLDRSKYNNLTDGSGLAHLTSLVDLQHLDLS 765
>gi|406836026|ref|ZP_11095620.1| leucine-rich repeat-containing protein [Schlesneria paludicola DSM
18645]
Length = 586
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 159/472 (33%), Positives = 244/472 (51%), Gaps = 24/472 (5%)
Query: 6 ISQQIFNELVYSRCLTEVSLE--AFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVD 63
IS ++L+ R LT + L A D AL+ L + + +L +++
Sbjct: 135 ISDAGLDKLLALRNLTAIDLSETAITDSALKPLSVLE-----------------NLSTIN 177
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS + + SGL L NL++L + I++ L + L NLT+L N I+A G
Sbjct: 178 LSTTKIDGSGLADLSGLKNLKTLVLSHS-PITNEALAGVAALRNLTTLELW-NTPISADG 235
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+K+ L +L KL+L + GL L L L++LN+ +TD+ + LS + NL
Sbjct: 236 LKSLGTLTDLTKLNLGFTSLDDTGLAELATLTNLKALNLMQTG-VTDTGLSSLSQIKNLT 294
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+L ++ +++TD+G+ + + L L+LEG +T L +L LG L L + + ++D
Sbjct: 295 NLNLNDTQITDAGMVAIARHKDLNELHLEGTRLTDVGLRALKTLGELDVLQIGKTAVTDA 354
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
G E+ + LK+L LG +++DE L L GL +L+SL L GI D G L L L
Sbjct: 355 GVEELAGFKHLKILRLGSTKVSDEGLKSLLGLEHLQSLGLGGTGITDVGAKQLASLTTLT 414
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
L+L T V G+R L GL+NLE ++L T ISD + L LK L L QI+D
Sbjct: 415 GLDLDATAVTDEGVRELGGLSNLEYLSLISTKISDDGVSGLGAFKKLKMLFLHNNQISDE 474
Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
GL L L+ LT L L ++TD G L+N K+L+ L +C +TDAG+K + LS L
Sbjct: 475 GLKGLNDLSQLTTLYLSMTQVTDVGMKELKNLKHLKDLVLCDTQITDAGLKELTGLSELN 534
Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK-PLKNLRSL 474
+L + +N +TD LE ++ L L + R + AGL K + N+R L
Sbjct: 535 VLVI-RNVAVTDACLEHLTSFKNLTHLCIDVHRFSEAGLNAFKTSMPNVRVL 585
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 161/485 (33%), Positives = 241/485 (49%), Gaps = 51/485 (10%)
Query: 45 NDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNF-------------- 90
ND+++ +I+ G L S+DLS + +TD GL L+ + L SL+ +
Sbjct: 64 NDRYVHLISPLGR-LESLDLSNTQITDLGLKELRKLNALTSLNLRYTAISDVGLSELSEM 122
Query: 91 ---------CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
QISD GL+ L L NLT++ AIT +K + L NL ++L
Sbjct: 123 SKLDTLNLSATQISDAGLDKLLALRNLTAIDLSET-AITDSALKPLSVLENLSTINLS-T 180
Query: 142 TRIHG-GLVNLKGLMKLESLNIK-----------------------WCNCITDSDMKPLS 177
T+I G GL +L GL L++L + W I+ +K L
Sbjct: 181 TKIDGSGLADLSGLKNLKTLVLSHSPITNEALAGVAALRNLTTLELWNTPISADGLKSLG 240
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
LT+L L + + + D+G+A L L L LNL VT L SLS + +L LNLN
Sbjct: 241 TLTDLTKLNLGFTSLDDTGLAELATLTNLKALNLMQTGVTDTGLSSLSQIKNLTNLNLND 300
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
Q++D G ++ L L+L +TD L LK L L+ L + + D G+ L
Sbjct: 301 TQITDAGMVAIARHKDLNELHLEGTRLTDVGLRALKTLGELDVLQIGKTAVTDAGVEELA 360
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
G +LK L L T+V GL+ L GL +L+S+ L TGI+D ++LA L++L L+LDA
Sbjct: 361 GFKHLKILRLGSTKVSDEGLKSLLGLEHLQSLGLGGTGITDVGAKQLASLTTLTGLDLDA 420
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
+TD G+ L L+ L +L L +I+D G + L FK L+ L + ++D G+K +
Sbjct: 421 TAVTDEGVRELGGLSNLEYLSLISTKISDDGVSGLGAFKKLKMLFLHNNQISDEGLKGLN 480
Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 477
DLS LT L LS +TD ++ + L L L + +++IT AGL+ L L L L +
Sbjct: 481 DLSQLTTLYLSM-TQVTDVGMKELKNLKHLKDLVLCDTQITDAGLKELTGLSELNVLVIR 539
Query: 478 SCKVT 482
+ VT
Sbjct: 540 NVAVT 544
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 118/338 (34%), Positives = 191/338 (56%), Gaps = 2/338 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L +LESL++ ITD +K L L L SL + + ++D G++ L + KL LNL
Sbjct: 74 LGRLESLDLSNTQ-ITDLGLKELRKLNALTSLNLRYTAISDVGLSELSEMSKLDTLNLSA 132
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
++ A LD L AL +L ++L+ ++D + S + +L +NL +I L L
Sbjct: 133 TQISDAGLDKLLALRNLTAIDLSETAITDSALKPLSVLENLSTINLSTTKIDGSGLADLS 192
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
GL NL++L L I +E L + L NL LEL +T + + GL+ L LT+L +NL F
Sbjct: 193 GLKNLKTLVLSHSPITNEALAGVAALRNLTTLELWNTPISADGLKSLGTLTDLTKLNLGF 252
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
T + D L +LA L++LK+LNL +TDTGL++L+ + LT+L+L +ITD+G +
Sbjct: 253 TSLDDTGLAELATLTNLKALNLMQTGVTDTGLSSLSQIKNLTNLNLNDTQITDAGMVAIA 312
Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
K+L L + G LTD G++ +K L L +L + + +TD +E ++G L L +
Sbjct: 313 RHKDLNELHLEGTRLTDVGLRALKTLGELDVLQIGKTA-VTDAGVEELAGFKHLKILRLG 371
Query: 454 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 491
+++++ GL+ L L++L+SL L +T K+L S
Sbjct: 372 STKVSDEGLKSLLGLEHLQSLGLGGTGITDVGAKQLAS 409
>gi|149174278|ref|ZP_01852905.1| serine/threonine protein kinase [Planctomyces maris DSM 8797]
gi|148846823|gb|EDL61159.1| serine/threonine protein kinase [Planctomyces maris DSM 8797]
Length = 1815
Score = 192 bits (489), Expect = 3e-46, Method: Composition-based stats.
Identities = 155/475 (32%), Positives = 235/475 (49%), Gaps = 38/475 (8%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S SL ++ + + +++SG+ LKD L+ L F QI GL HL+ L NL L
Sbjct: 1328 SNMPSLTTLYVGSTAISNSGVEQLKDMKQLEKLSFT-NTQIDGVGLGHLKDLKNLKILGL 1386
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+ +I+ ++ GL L+ L L C GL LK L L+ L++ ITD +
Sbjct: 1387 E-STSISDVDLQHLHGLKILIVLGLSNCKIADSGLAYLKDLKNLKVLSLD-STPITDEGL 1444
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLL-NLEGCPVTAA------------ 219
K LSGL L++L++ +KVT GIA L K L ++ + E P+ +
Sbjct: 1445 KHLSGLKMLQTLELQKTKVTPQGIASLQKALPNCKIVSDFETKPIMTSDSPMTDREIAEW 1504
Query: 220 CLDSLSALGSLFYLN-----------------LNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+ +G F LN L D ++ +K+ +LK L L
Sbjct: 1505 VIGMGGGIGIGFKLNYKIEELPTEPVIFNSVSLKNASFEDHDLQRLAKLKTLKYLFLEST 1564
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
I+D L +L+ + NLE + LD I DEGL++L GL NL+ L LS T++ GL HL
Sbjct: 1565 SISDTGLQYLRQMQNLEEIFLDYTNITDEGLLHLRGLQNLRVLRLSKTKITGEGLGHLKD 1624
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHL-DLF 380
L L +I+++ I++ ++ + L L SLN+ Q+ DTGL + LT L L
Sbjct: 1625 LPRLHTIDVNRAAITNSGMKAMGDLKQLTSLNISFNSQVDDTGLGYIEGLTKLEKLFAHL 1684
Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
+ITD G +L+ K L SL + G+T G++ + SL+ L+L+ NC +TD LE
Sbjct: 1685 VPKITDEGLKHLQGMKQLESLTLSSTGITTTGLEQLTKHESLSKLDLT-NCKITDSGLEH 1743
Query: 441 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP 495
+ L L L + + ++ AGL+HL LK L +L L KVT+ I LQ + LP
Sbjct: 1744 LQDLKNLRDLRLDLTPVSDAGLQHLYSLKKLENLDLRETKVTSQGIADLQ-KALP 1797
Score = 114 bits (285), Expect = 1e-22, Method: Composition-based stats.
Identities = 106/396 (26%), Positives = 174/396 (43%), Gaps = 36/396 (9%)
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
LDL+ + L L GL L LN++ ++D+ ++ L + L + + +++TD
Sbjct: 1265 LDLKGTSVKDDDLKRLAGLKTLPKLNLE-NTLVSDTGLQYLKDIP-LNYISLIGTQITDK 1322
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G YL + LT L + ++ + ++ L + L L+ Q+ G + +LK
Sbjct: 1323 GFGYLSNMPSLTTLYVGSTAISNSGVEQLKDMKQLEKLSFTNTQIDGVGLGHLKDLKNLK 1382
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
+L L I+D L HL GL L L L +C I D GL L L NLK L L T +
Sbjct: 1383 ILGLESTSISDVDLQHLHGLKILIVLGLSNCKIADSGLAYLKDLKNLKVLSLDSTPITDE 1442
Query: 316 GLRHLSGLTNLESINLSFTGISD---GSLR------KLAGLSSLKSLNLDARQITDTGLA 366
GL+HLSGL L+++ L T ++ SL+ K+ K + +TD +A
Sbjct: 1443 GLKHLSGLKMLQTLELQKTKVTPQGIASLQKALPNCKIVSDFETKPIMTSDSPMTDREIA 1502
Query: 367 AL----------------------TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
T + L A D L K L+ L +
Sbjct: 1503 EWVIGMGGGIGIGFKLNYKIEELPTEPVIFNSVSLKNASFEDHDLQRLAKLKTLKYLFLE 1562
Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
++D G+++++ + +L + L N+TD+ L + GL L L +S ++IT GL H
Sbjct: 1563 STSISDTGLQYLRQMQNLEEIFLDYT-NITDEGLLHLRGLQNLRVLRLSKTKITGEGLGH 1621
Query: 465 LKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 500
LK L L ++ + +T + +K + DL L S
Sbjct: 1622 LKDLPRLHTIDVNRAAITNSGMKAMG--DLKQLTSL 1655
Score = 102 bits (253), Expect = 6e-19, Method: Composition-based stats.
Identities = 92/322 (28%), Positives = 149/322 (46%), Gaps = 33/322 (10%)
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
+ L+L+G V L L+ L +L LNL +SD G + I L ++L +IT
Sbjct: 1262 INFLDLKGTSVKDDDLKRLAGLKTLPKLNLENTLVSDTGLQYLKDI-PLNYISLIGTQIT 1320
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
D+ +L + +L +L + S I + G+ L + L+ L ++TQ+ GL HL L N
Sbjct: 1321 DKGFGYLSNMPSLTTLYVGSTAISNSGVEQLKDMKQLEKLSFTNTQIDGVGLGHLKDLKN 1380
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L+ + L T ISD L+ L GL L L L +I D+GLA L L L L L IT
Sbjct: 1381 LKILGLESTSISDVDLQHLHGLKILIVLGLSNCKIADSGLAYLKDLKNLKVLSLDSTPIT 1440
Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLN-------LSQNCNLTDKT 437
D G +L K L++LE+ +T G+ + K L + +++ ++ + +TD+
Sbjct: 1441 DEGLKHLSGLKMLQTLELQKTKVTPQGIASLQKALPNCKIVSDFETKPIMTSDSPMTDRE 1500
Query: 438 L----------------------ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
+ EL + S+++ N+ L+ L LK L+ L
Sbjct: 1501 IAEWVIGMGGGIGIGFKLNYKIEELPTEPVIFNSVSLKNASFEDHDLQRLAKLKTLKYLF 1560
Query: 476 LESCKVTANDIKRLQSRDLPNL 497
LES ++ ++ L R + NL
Sbjct: 1561 LESTSISDTGLQYL--RQMQNL 1580
>gi|301098037|ref|XP_002898112.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262105473|gb|EEY63525.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 648
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 158/510 (30%), Positives = 252/510 (49%), Gaps = 13/510 (2%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQG-SSL 59
+LP +++ + L L + +A L + L + V D W D I + S+
Sbjct: 141 VLPPELALSVLQWLKQHYVLDKPQFQALTPLLLLEWNLADHQDVEDSWFDDIPEKTLESV 200
Query: 60 LSVDLSG----SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
S+D+SG + H+ L F C +S +E L+ + LT+L+
Sbjct: 201 KSIDVSGCIHLQQLGSEWGRHVNRLPELLVASFQGCTGLSKETIEMLKLSTKLTTLNLSG 260
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+ + +K+ L +L L L C R+ G+ L L KLE L + C +TD
Sbjct: 261 CANVDDKCVKSLRQLEHLKSLQLVGCRRLTDKGVKRLFKLTKLEKLRLGRCRKLTDDAFG 320
Query: 175 P-LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFY 232
+ L+ L +S ++++ + ++ ++ L +L + GC ++ + SL+ L +L Y
Sbjct: 321 GFVDSFPKLRELDVSNCRLSERAMQHIGQVKSLEVLVIRGCQDISDVGMASLAELTNLKY 380
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
+ C ++++ L+VL LG+ + L+ LT L+ L L C I G
Sbjct: 381 FDARHCGKIHSIPTEWTQ---LEVLLLGYTAFAESDAAVLQYLTKLQELELRKCRIMKRG 437
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
++ L +L+ LE+++T + S L + + NL+++N+S T ISD L L L+
Sbjct: 438 FQFISRLKHLERLEVAETALTDSRLLEICNNAINLKALNVSNTEISDSGTTGLTKLKELR 497
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
L LD IT+ LA L+ L L LDLFGA ITD+G +L L+ L ICGG + D
Sbjct: 498 ILGLDTSGITNRALANLSFLPQLERLDLFGANITDNGLMHLIPLHKLQELAICGGNIGDR 557
Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 471
GV I L+SLT LNLSQN N+ K+L + LT L LN+SN+ I++ LRHL PLK L
Sbjct: 558 GVGLISKLTSLTSLNLSQNRNIRTKSLFYLRSLTSLRCLNLSNTGISALSLRHLSPLKEL 617
Query: 472 RSLTLESCKVTANDIKRLQSRDLPNLVSFR 501
+SL++ C ++ I L+ LP L R
Sbjct: 618 QSLSVYGCSLSQGHIDVLRE-ILPELKCLR 646
>gi|306012373|gb|ADM75240.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012405|gb|ADM75256.1| leucine rich repeat-like protein, partial [Picea sitchensis]
Length = 137
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 92/135 (68%), Positives = 114/135 (84%)
Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
ALTSLTGLTHLDLFGARITD G + LR FK L+SLE+CGG +TDAGVK+IKDL+S+ LN
Sbjct: 1 ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLN 60
Query: 427 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 486
LSQN +LTD LE ISG+T LVSLN+SN+R+T+AGL+HL+PLKNL SL+L++CKVT +I
Sbjct: 61 LSQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEI 120
Query: 487 KRLQSRDLPNLVSFR 501
++LQ+ LPNL R
Sbjct: 121 RKLQATALPNLAGVR 135
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 3/135 (2%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ LT L L + +++TD G + L+ +KL L L G +T A + ++ L S+ LNL
Sbjct: 2 LTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNL 61
Query: 236 NR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
++ L+D E S + +L LN+ +T+ L HL+ L NL SL+L +C + +
Sbjct: 62 SQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEIR 121
Query: 295 NL--TGLCNLKCLEL 307
L T L NL + L
Sbjct: 122 KLQATALPNLAGVRL 136
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 7/138 (5%)
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
L +LTGL +L T G+S LR+ L+S+ L I+D ++ + L+S+
Sbjct: 1 ALTSLTGLTHLDLFGARITDYGTSCLRYFK---KLQSLELCGGSITDAGVKNIKDLTSMM 57
Query: 352 SLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
SLNL +TD L ++ +T L L++ R+T++G +LR KNL SL + +T
Sbjct: 58 SLNLSQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT- 116
Query: 411 AGVKHIKDLSSLTLLNLS 428
I+ L + L NL+
Sbjct: 117 --WPEIRKLQATALPNLA 132
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
L L GL++L R IT G L L+L + G+ N+K L +
Sbjct: 1 ALTSLTGLTHLDLFGAR----ITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSM 56
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
SLN+ + +TD ++ +SG+T L SL IS ++VT++G+ +L+ L+ LT L+L+ C VT
Sbjct: 57 MSLNLSQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT 116
Query: 218 AACLDSLSA 226
+ L A
Sbjct: 117 WPEIRKLQA 125
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 76/137 (55%), Gaps = 3/137 (2%)
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
+L++L L +L+L +++D G L+ L L ITD + ++K LT++ SLN
Sbjct: 1 ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLN 60
Query: 283 L-DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
L + + D L ++G+ L L +S+T+V ++GL+HL L NL S++L ++ +
Sbjct: 61 LSQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEI 120
Query: 342 RKL--AGLSSLKSLNLD 356
RKL L +L + LD
Sbjct: 121 RKLQATALPNLAGVRLD 137
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
L LT L L+L I D G L L+ LEL + +G++++ LT++ S+NL
Sbjct: 2 LTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNL 61
Query: 332 SF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
S + ++DG+L ++G+++L SLN+ ++T+ GL L L LT L L ++T
Sbjct: 62 SQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT 116
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 77/134 (57%), Gaps = 6/134 (4%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRR 115
+ L +DL G+ +TD G L+ LQSL+ C I+D G+++++ L+++ SL+ +
Sbjct: 6 TGLTHLDLFGARITDYGTSCLRYFKKLQSLE--LCGGSITDAGVKNIKDLTSMMSLNLSQ 63
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N+ +T ++ +G+ LV L++ + GL +L+ L L SL+++ C +T +++
Sbjct: 64 NSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACK-VTWPEIRK 122
Query: 176 L--SGLTNLKSLQI 187
L + L NL +++
Sbjct: 123 LQATALPNLAGVRL 136
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN-CITDSDMKPLSGLTNLKS 184
A L L LDL G L+ KL+SL + C ITD+ +K + LT++ S
Sbjct: 1 ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLEL--CGGSITDAGVKNIKDLTSMMS 58
Query: 185 LQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L +S S +TD + ++ G+ L LN+ VT A L L L +L L+L C+++
Sbjct: 59 LNLSQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWP 118
Query: 244 GCEKF 248
K
Sbjct: 119 EIRKL 123
>gi|46447096|ref|YP_008461.1| hypothetical protein pc1462 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400737|emb|CAF24186.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 870
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 173/469 (36%), Positives = 253/469 (53%), Gaps = 22/469 (4%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
ALQ+L L + + D + ++S ++L +DLSG D+TD+GL HL +LQ LD +
Sbjct: 385 ALQNLDLSECYLLKDTGLAHLSSL-TALQYLDLSGCDDLTDAGLAHLTPLVSLQHLDLSK 443
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
C ++ GL HL L L L +T G+ L L LDL C + GLV
Sbjct: 444 CENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLTALKHLDLSECKNLTDDGLV 503
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-----SCSKVTDSGIAYLKGLQ 204
+L L+ L+ L++K C +TD+ + L+ LT L+ L + C +TD G+A+L L
Sbjct: 504 HLSSLVALQYLSLKLCENLTDAGLAHLTSLTALEHLDLGLDFGYCQNLTDDGLAHLSSLT 563
Query: 205 KLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFN 262
L L+L +T A L L++L +L +L+L+ C+ L+D+G + + +L+ L+L +
Sbjct: 564 ALKHLDLSWRENLTDAGLAHLTSLTALKHLDLSWCENLTDEGLAYLTPLVALQYLSLKGS 623
Query: 263 EITDECLVHLKGLTNLESLNLDSCG--IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRH 319
+ITDE L HL L+ L L+L+ C GL +LT L NL+ L+LS + S L
Sbjct: 624 DITDEGLEHLAHLSALRHLSLNDCRRIYHGYGLAHLTTLVNLEHLDLSGCYSLSSFKLIF 683
Query: 320 LSGLTNLESINLS--FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT--GL 374
LS L NL+ +NLS F DG L L L +L+ L+L + +TD GLA LTSL GL
Sbjct: 684 LSSLVNLQHLNLSGCFGLYHDG-LEDLTPLMNLQYLDLSSCINLTDKGLAYLTSLVGLGL 742
Query: 375 THLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCN 432
HLDL G + ITD+G A+L + L L++ LTD G+ ++ + L LNL
Sbjct: 743 QHLDLSGCKEITDTGLAHLTSLVGLEYLDLSWCENLTDKGLAYLTSFAGLKYLNLKGCKK 802
Query: 433 LTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 480
+TD L ++ L L LN+S +T GL HL L NL+ L L CK
Sbjct: 803 ITDAGLAHLTSLVTLQRLNLSECVNLTDTGLAHLVSLVNLQDLELRECK 851
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 161/452 (35%), Positives = 229/452 (50%), Gaps = 43/452 (9%)
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D+GL HL + LQ+LD + C + D GL HL L+ L L + +T G+ L
Sbjct: 374 DTGLAHLTSLTALQNLDLSECYLLKDTGLAHLSSLTALQYLDLSGCDDLTDAGLAHLTPL 433
Query: 131 INLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
++L LDL +C + G GL +L L+ L L + C +TD+ + L+ LT LK L +S
Sbjct: 434 VSLQHLDLSKCENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLTALKHLDLSE 493
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNL----NRCQ-LSD 242
C +TD G+ +L L L L+L+ C +T A L L++L +L +L+L CQ L+D
Sbjct: 494 CKNLTDDGLVHLSSLVALQYLSLKLCENLTDAGLAHLTSLTALEHLDLGLDFGYCQNLTD 553
Query: 243 DGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC 300
DG S + +LK L+L + E +TD L HL LT L+ L+L C + DEGL LT L
Sbjct: 554 DGLAHLSSLTALKHLDLSWRENLTDAGLAHLTSLTALKHLDLSWCENLTDEGLAYLTPLV 613
Query: 301 NLKCLELSDTQVGSSGLRHLSGLT--------------------------NLESINLS-F 333
L+ L L + + GL HL+ L+ NLE ++LS
Sbjct: 614 ALQYLSLKGSDITDEGLEHLAHLSALRHLSLNDCRRIYHGYGLAHLTTLVNLEHLDLSGC 673
Query: 334 TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAY 391
+S L L+ L +L+ LNL + GL LT L L +LDL +TD G AY
Sbjct: 674 YSLSSFKLIFLSSLVNLQHLNLSGCFGLYHDGLEDLTPLMNLQYLDLSSCINLTDKGLAY 733
Query: 392 LRNFK--NLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
L + L+ L++ G +TD G+ H+ L L L+LS NLTDK L ++ GL
Sbjct: 734 LTSLVGLGLQHLDLSGCKEITDTGLAHLTSLVGLEYLDLSWCENLTDKGLAYLTSFAGLK 793
Query: 449 SLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 479
LN+ +IT AGL HL L L+ L L C
Sbjct: 794 YLNLKGCKKITDAGLAHLTSLVTLQRLNLSEC 825
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 121/339 (35%), Positives = 180/339 (53%), Gaps = 41/339 (12%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV----TDSGIAYLKGLQKLTLLNLE 212
+E LN+ + T++ L N K+L++ C K+ D+G+A+L L L L+L
Sbjct: 336 IEELNLSGKDFFTEAHFL---ALKNCKNLKVLCLKIFYTPIDTGLAHLTSLTALQNLDLS 392
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVH 271
C YL L D G S + +L+ L+L G +++TD L H
Sbjct: 393 EC-----------------YL------LKDTGLAHLSSLTALQYLDLSGCDDLTDAGLAH 429
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESI 329
L L +L+ L+L C + +GL +LT L L+ L LSD + + +GL HL+ LT L+ +
Sbjct: 430 LTPLVSLQHLDLSKCENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLTALKHL 489
Query: 330 NLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL---FG--A 382
+LS ++D L L+ L +L+ L+L +TD GLA LTSLT L HLDL FG
Sbjct: 490 DLSECKNLTDDGLVHLSSLVALQYLSLKLCENLTDAGLAHLTSLTALEHLDLGLDFGYCQ 549
Query: 383 RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
+TD G A+L + L+ L++ LTDAG+ H+ L++L L+LS NLTD+ L +
Sbjct: 550 NLTDDGLAHLSSLTALKHLDLSWRENLTDAGLAHLTSLTALKHLDLSWCENLTDEGLAYL 609
Query: 442 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
+ L L L++ S IT GL HL L LR L+L C+
Sbjct: 610 TPLVALQYLSLKGSDITDEGLEHLAHLSALRHLSLNDCR 648
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 105/310 (33%), Positives = 156/310 (50%), Gaps = 11/310 (3%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD GL HL + L+ LD ++ ++D GL HL L+ L L +T +G+
Sbjct: 550 NLTDDGLAHLSSLTALKHLDLSWRENLTDAGLAHLTSLTALKHLDLSWCENLTDEGLAYL 609
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD-SDMKPLSGLTNLKSLQ 186
L+ L L L+ GL +L L L L++ C I + L+ L NL+ L
Sbjct: 610 TPLVALQYLSLKGSDITDEGLEHLAHLSALRHLSLNDCRRIYHGYGLAHLTTLVNLEHLD 669
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
+S C ++ + +L L L LNL GC + L+ L+ L +L YL+L+ C L+D
Sbjct: 670 LSGCYSLSSFKLIFLSSLVNLQHLNLSGCFGLYHDGLEDLTPLMNLQYLDLSSCINLTDK 729
Query: 244 GCEKFSKIGSLKVLNL---GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 299
G + + L + +L G EITD L HL L LE L+L C + D+GL LT
Sbjct: 730 GLAYLTSLVGLGLQHLDLSGCKEITDTGLAHLTSLVGLEYLDLSWCENLTDKGLAYLTSF 789
Query: 300 CNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-D 356
LK L L ++ +GL HL+ L L+ +NLS ++D L L L +L+ L L +
Sbjct: 790 AGLKYLNLKGCKKITDAGLAHLTSLVTLQRLNLSECVNLTDTGLAHLVSLVNLQDLELRE 849
Query: 357 ARQITDTGLA 366
+ ITDTGLA
Sbjct: 850 CKSITDTGLA 859
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 111/225 (49%), Gaps = 11/225 (4%)
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
+E L+ LK L N L + I ++GL N S L H S T+
Sbjct: 282 EESLIELKELLNFARLYQLNNLINYLEFTVVSGLLN----NTSHVNEFEKILNHFS--TD 335
Query: 326 LESINLSFTGI-SDGSLRKLAGLSSLKSLNLDARQIT-DTGLAALTSLTGLTHLDLFGAR 383
+E +NLS ++ L +LK L L DTGLA LTSLT L +LDL
Sbjct: 336 IEELNLSGKDFFTEAHFLALKNCKNLKVLCLKIFYTPIDTGLAHLTSLTALQNLDLSECY 395
Query: 384 I-TDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
+ D+G A+L + L+ L++ G LTDAG+ H+ L SL L+LS+ NLT L +
Sbjct: 396 LLKDTGLAHLSSLTALQYLDLSGCDDLTDAGLAHLTPLVSLQHLDLSKCENLTGDGLAHL 455
Query: 442 SGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCKVTAND 485
+ L L L +S+ R +T AGL HL PL L+ L L CK +D
Sbjct: 456 TPLVALRHLGLSDCRNLTDAGLAHLTPLTALKHLDLSECKNLTDD 500
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 74/142 (52%), Gaps = 3/142 (2%)
Query: 33 LQDLCLGQYPGVNDKWMDVIAS-QGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
LQ L L + DK + + S G L +DLSG ++TD+GL HL L+ LD ++
Sbjct: 715 LQYLDLSSCINLTDKGLAYLTSLVGLGLQHLDLSGCKEITDTGLAHLTSLVGLEYLDLSW 774
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
C ++D GL +L + L L+ + IT G+ L+ L +L+L C + GL
Sbjct: 775 CENLTDKGLAYLTSFAGLKYLNLKGCKKITDAGLAHLTSLVTLQRLNLSECVNLTDTGLA 834
Query: 150 NLKGLMKLESLNIKWCNCITDS 171
+L L+ L+ L ++ C ITD+
Sbjct: 835 HLVSLVNLQDLELRECKSITDT 856
>gi|46447144|ref|YP_008509.1| hypothetical protein pc1510 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400785|emb|CAF24234.1| hypothetical protein pc1510 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 670
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 156/420 (37%), Positives = 213/420 (50%), Gaps = 33/420 (7%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
+ +TD+ L+ LK C NL+ L C ++D GL HL L L L + + +T G+
Sbjct: 275 ENAHLTDAHLLALKTCKNLKVLYLKKCCNLTDAGLPHLTPLVALQYLDLSKCHNLTDAGL 334
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
L L L L C + GL +LK L+ L+ LN+ CN TD+ + L+ L LK
Sbjct: 335 THLTFLDALNYLGLGECYNLTDTGLAHLKSLINLQHLNLNNCN-FTDAGLAHLTPLVTLK 393
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLS 241
L +S C +TD+G+A+L L L LNL C +T L LS L +L +LNLN C+L
Sbjct: 394 YLNLSQCYNLTDAGLAHLTPLVNLQQLNLSDCTNLTDTGLAYLSPLVTLQHLNLNVCKLI 453
Query: 242 DDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 299
D G + + +L+ LNL + +TD L HL L L+ L+LD C + D GL +LT L
Sbjct: 454 DAGLAHLTPLVNLQQLNLSYCTNLTDAGLAHLSTLVTLQHLDLDGCYKLTDIGLAHLTPL 513
Query: 300 CNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL-D 356
LK L LS + +GL HL+ L L+ ++LS+ G + D L L L +LK L+L +
Sbjct: 514 VTLKYLNLSCCHNLTGAGLAHLTPLVALKHLDLSWNGDLEDAGLAHLTPLVALKYLDLSE 573
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
+TD GLA L SL L HLDL G LTDAG+ H+
Sbjct: 574 CYHLTDAGLAHLRSLVALKHLDLRGCY-----------------------QLTDAGIAHL 610
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLT 475
L +L L+L NLTD L ++ L L L + N RIT AGL HL LR T
Sbjct: 611 TPLVALKYLDLKGCPNLTDAGLAHLTSLIALQDLELPNCQRITDAGLAHLASSMTLRIWT 670
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 138/381 (36%), Positives = 206/381 (54%), Gaps = 10/381 (2%)
Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCI 168
+L+F N +T + A NL L L++C + GL +L L+ L+ L++ C+ +
Sbjct: 270 ALNFSENAHLTDAHLLALKTCKNLKVLYLKKCCNLTDAGLPHLTPLVALQYLDLSKCHNL 329
Query: 169 TDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
TD+ + L+ L L L + C +TD+G+A+LK L L LNL C T A L L+ L
Sbjct: 330 TDAGLTHLTFLDALNYLGLGECYNLTDTGLAHLKSLINLQHLNLNNCNFTDAGLAHLTPL 389
Query: 228 GSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDS 285
+L YLNL++C L+D G + + +L+ LNL +TD L +L L L+ LNL+
Sbjct: 390 VTLKYLNLSQCYNLTDAGLAHLTPLVNLQQLNLSDCTNLTDTGLAYLSPLVTLQHLNLNV 449
Query: 286 CGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRK 343
C + D GL +LT L NL+ L LS T + +GL HLS L L+ ++L ++D L
Sbjct: 450 CKLIDAGLAHLTPLVNLQQLNLSYCTNLTDAGLAHLSTLVTLQHLDLDGCYKLTDIGLAH 509
Query: 344 LAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSL 401
L L +LK LNL +T GLA LT L L HLDL + + D+G A+L L+ L
Sbjct: 510 LTPLVTLKYLNLSCCHNLTGAGLAHLTPLVALKHLDLSWNGDLEDAGLAHLTPLVALKYL 569
Query: 402 EICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITS 459
++ LTDAG+ H++ L +L L+L LTD + ++ L L L++ +T
Sbjct: 570 DLSECYHLTDAGLAHLRSLVALKHLDLRGCYQLTDAGIAHLTPLVALKYLDLKGCPNLTD 629
Query: 460 AGLRHLKPLKNLRSLTLESCK 480
AGL HL L L+ L L +C+
Sbjct: 630 AGLAHLTSLIALQDLELPNCQ 650
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 160/301 (53%), Gaps = 7/301 (2%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L ++L+ + TD+GL HL L+ L+ + C ++D GL HL L NL L+
Sbjct: 367 NLQHLNLNNCNFTDAGLAHLTPLVTLKYLNLSQCYNLTDAGLAHLTPLVNLQQLNLSDCT 426
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+T G+ + L+ L L+L C I GL +L L+ L+ LN+ +C +TD+ + LS
Sbjct: 427 NLTDTGLAYLSPLVTLQHLNLNVCKLIDAGLAHLTPLVNLQQLNLSYCTNLTDAGLAHLS 486
Query: 178 GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNL 235
L L+ L + C K+TD G+A+L L L LNL C +T A L L+ L +L +L+L
Sbjct: 487 TLVTLQHLDLDGCYKLTDIGLAHLTPLVTLKYLNLSCCHNLTGAGLAHLTPLVALKHLDL 546
Query: 236 N-RCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEG 292
+ L D G + + +LK L+L +TD L HL+ L L+ L+L C + D G
Sbjct: 547 SWNGDLEDAGLAHLTPLVALKYLDLSECYHLTDAGLAHLRSLVALKHLDLRGCYQLTDAG 606
Query: 293 LVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSL 350
+ +LT L LK L+L + +GL HL+ L L+ + L + I+D L LA +L
Sbjct: 607 IAHLTPLVALKYLDLKGCPNLTDAGLAHLTSLIALQDLELPNCQRITDAGLAHLASSMTL 666
Query: 351 K 351
+
Sbjct: 667 R 667
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 89/240 (37%), Positives = 118/240 (49%), Gaps = 29/240 (12%)
Query: 246 EKFSKIGSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
EK S +V L F+E +TD L+ LK NL+ L L C CNL
Sbjct: 258 EKILNYFSNEVEALNFSENAHLTDAHLLALKTCKNLKVLYLKKC-------------CNL 304
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQI 360
+GL HL+ L L+ ++LS ++D L L L +L L L + +
Sbjct: 305 T----------DAGLPHLTPLVALQYLDLSKCHNLTDAGLTHLTFLDALNYLGLGECYNL 354
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDL 419
TDTGLA L SL L HL+L TD+G A+L L+ L + LTDAG+ H+ L
Sbjct: 355 TDTGLAHLKSLINLQHLNLNNCNFTDAGLAHLTPLVTLKYLNLSQCYNLTDAGLAHLTPL 414
Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 479
+L LNLS NLTD L +S L L LN++ ++ AGL HL PL NL+ L L C
Sbjct: 415 VNLQQLNLSDCTNLTDTGLAYLSPLVTLQHLNLNVCKLIDAGLAHLTPLVNLQQLNLSYC 474
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 381 GARITDSGAAYLRNFKNLRSLEI---CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
A +TD+ L+ KNL+ L + C LTDAG+ H+ L +L L+LS+ NLTD
Sbjct: 276 NAHLTDAHLLALKTCKNLKVLYLKKCCN--LTDAGLPHLTPLVALQYLDLSKCHNLTDAG 333
Query: 438 LELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVT 482
L ++ L L L + +T GL HLK L NL+ L L +C T
Sbjct: 334 LTHLTFLDALNYLGLGECYNLTDTGLAHLKSLINLQHLNLNNCNFT 379
>gi|306012335|gb|ADM75221.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012337|gb|ADM75222.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012341|gb|ADM75224.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012343|gb|ADM75225.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012345|gb|ADM75226.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012347|gb|ADM75227.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012349|gb|ADM75228.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012353|gb|ADM75230.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012355|gb|ADM75231.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012357|gb|ADM75232.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012361|gb|ADM75234.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012363|gb|ADM75235.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012365|gb|ADM75236.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012367|gb|ADM75237.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012369|gb|ADM75238.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012375|gb|ADM75241.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012377|gb|ADM75242.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012379|gb|ADM75243.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012383|gb|ADM75245.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012385|gb|ADM75246.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012387|gb|ADM75247.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012389|gb|ADM75248.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012393|gb|ADM75250.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012399|gb|ADM75253.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012407|gb|ADM75257.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012409|gb|ADM75258.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012411|gb|ADM75259.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012413|gb|ADM75260.1| leucine rich repeat-like protein, partial [Picea sitchensis]
Length = 137
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 91/135 (67%), Positives = 114/135 (84%)
Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
ALTSLTGLTHLDLFGARITD G + LR FK L+SLE+CGG +TDAGVK+IKDL+S+ LN
Sbjct: 1 ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLN 60
Query: 427 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 486
LSQN +LTD LE ISG+T L+SLN+SN+R+T+AGL+HL+PLKNL SL+L++CKVT +I
Sbjct: 61 LSQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEI 120
Query: 487 KRLQSRDLPNLVSFR 501
++LQ+ LPNL R
Sbjct: 121 RKLQATALPNLAGVR 135
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 3/135 (2%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ LT L L + +++TD G + L+ +KL L L G +T A + ++ L S+ LNL
Sbjct: 2 LTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNL 61
Query: 236 NR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
++ L+D E S + +L LN+ +T+ L HL+ L NL SL+L +C + +
Sbjct: 62 SQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEIR 121
Query: 295 NL--TGLCNLKCLEL 307
L T L NL + L
Sbjct: 122 KLQATALPNLAGVRL 136
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 7/138 (5%)
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
L +LTGL +L T G+S LR+ L+S+ L I+D ++ + L+S+
Sbjct: 1 ALTSLTGLTHLDLFGARITDYGTSCLRYFK---KLQSLELCGGSITDAGVKNIKDLTSMM 57
Query: 352 SLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
SLNL +TD L ++ +T L L++ R+T++G +LR KNL SL + +T
Sbjct: 58 SLNLSQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT- 116
Query: 411 AGVKHIKDLSSLTLLNLS 428
I+ L + L NL+
Sbjct: 117 --WPEIRKLQATALPNLA 132
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
L L GL++L R IT G L L+L + G+ N+K L +
Sbjct: 1 ALTSLTGLTHLDLFGAR----ITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSM 56
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
SLN+ + +TD ++ +SG+T L SL IS ++VT++G+ +L+ L+ LT L+L+ C VT
Sbjct: 57 MSLNLSQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT 116
Query: 218 AACLDSLSA 226
+ L A
Sbjct: 117 WPEIRKLQA 125
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 76/137 (55%), Gaps = 3/137 (2%)
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
+L++L L +L+L +++D G L+ L L ITD + ++K LT++ SLN
Sbjct: 1 ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLN 60
Query: 283 L-DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
L + + D L ++G+ L L +S+T+V ++GL+HL L NL S++L ++ +
Sbjct: 61 LSQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEI 120
Query: 342 RKL--AGLSSLKSLNLD 356
RKL L +L + LD
Sbjct: 121 RKLQATALPNLAGVRLD 137
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
L LT L L+L I D G L L+ LEL + +G++++ LT++ S+NL
Sbjct: 2 LTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNL 61
Query: 332 SF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
S + ++DG+L ++G+++L SLN+ ++T+ GL L L LT L L ++T
Sbjct: 62 SQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT 116
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 77/134 (57%), Gaps = 6/134 (4%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRR 115
+ L +DL G+ +TD G L+ LQSL+ C I+D G+++++ L+++ SL+ +
Sbjct: 6 TGLTHLDLFGARITDYGTSCLRYFKKLQSLE--LCGGSITDAGVKNIKDLTSMMSLNLSQ 63
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N+ +T ++ +G+ L+ L++ + GL +L+ L L SL+++ C +T +++
Sbjct: 64 NSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACK-VTWPEIRK 122
Query: 176 L--SGLTNLKSLQI 187
L + L NL +++
Sbjct: 123 LQATALPNLAGVRL 136
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN-CITDSDMKPLSGLTNLKS 184
A L L LDL G L+ KL+SL + C ITD+ +K + LT++ S
Sbjct: 1 ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLEL--CGGSITDAGVKNIKDLTSMMS 58
Query: 185 LQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L +S S +TD + ++ G+ L LN+ VT A L L L +L L+L C+++
Sbjct: 59 LNLSQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWP 118
Query: 244 GCEKF 248
K
Sbjct: 119 EIRKL 123
>gi|46446522|ref|YP_007887.1| hypothetical protein pc0888 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400163|emb|CAF23612.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 653
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 156/411 (37%), Positives = 231/411 (56%), Gaps = 13/411 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LKDC NL+ L C I+D GL HL L+ L L +T G+
Sbjct: 236 LTDAHLLALKDCKNLKVLHLEKCQVITDDGLAHLTPLTALQHLELSDCRKLTDAGLAHLT 295
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNC-ITDSDMKPLSGLTNLKSLQ 186
L L L+L C ++ GL +L L L+ LN+ C +TD+ + L+ LT L+ L
Sbjct: 296 PLTALQHLNLSFCDKLTDAGLAHLTPLTALQHLNLSRCYYKLTDAGLAHLTPLTALQHLN 355
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNL-EGCPVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
+S C K+TD+G+ +LK L L L+L E +T A L L+ L +L +L+L+ C +L+D
Sbjct: 356 LSFCDKLTDAGLVHLKLLTGLQHLDLREFWELTGAGLAHLTTLTALQHLDLSGCDKLTDV 415
Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
G + + +L+ L+L +T+ LVHLK LT L+ LNL C + D GL +LT L
Sbjct: 416 GLAHLTPLTTLQHLDLKRCRNLTNAGLVHLKLLTGLQHLNLSECYHLTDAGLAHLTPLTA 475
Query: 302 LKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DAR 358
L+ L+LS +++ GL HL+ LT L+ ++LS + ++D L L L++L+ L L R
Sbjct: 476 LQHLDLSQCSKLTDDGLAHLTPLTALQHLDLSQCSKLTDDGLAHLTPLTALQHLVLARCR 535
Query: 359 QITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI 416
+TD GLA LT L L HL+L G ++T +G A+LR L+ L++ GLTDAG+ H+
Sbjct: 536 NLTDAGLAHLTPLETLQHLNLSGGYKLTGAGLAHLRPLVALQHLDLSYCNGLTDAGLAHL 595
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLK 466
L +L L+LS LTD L + L L L++S +T AGL H K
Sbjct: 596 TPLVALQHLDLSYCDGLTDAGLTHLRPLVALQHLDLSYCDGLTDAGLAHFK 646
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 135/346 (39%), Positives = 203/346 (58%), Gaps = 12/346 (3%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQ 204
L+ LK L+ L+++ C ITD + L+ LT L+ L++S C K+TD+G+A+L L
Sbjct: 239 AHLLALKDCKNLKVLHLEKCQVITDDGLAHLTPLTALQHLELSDCRKLTDAGLAHLTPLT 298
Query: 205 KLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC--QLSDDGCEKFSKIGSLKVLNLGF 261
L LNL C +T A L L+ L +L +LNL+RC +L+D G + + +L+ LNL F
Sbjct: 299 ALQHLNLSFCDKLTDAGLAHLTPLTALQHLNLSRCYYKLTDAGLAHLTPLTALQHLNLSF 358
Query: 262 -NEITDECLVHLKGLTNLESLNL-DSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLR 318
+++TD LVHLK LT L+ L+L + + GL +LT L L+ L+LS ++ GL
Sbjct: 359 CDKLTDAGLVHLKLLTGLQHLDLREFWELTGAGLAHLTTLTALQHLDLSGCDKLTDVGLA 418
Query: 319 HLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTH 376
HL+ LT L+ ++L +++ L L L+ L+ LNL + +TD GLA LT LT L H
Sbjct: 419 HLTPLTTLQHLDLKRCRNLTNAGLVHLKLLTGLQHLNLSECYHLTDAGLAHLTPLTALQH 478
Query: 377 LDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
LDL +++TD G A+L L+ L++ LTD G+ H+ L++L L L++ NLT
Sbjct: 479 LDLSQCSKLTDDGLAHLTPLTALQHLDLSQCSKLTDDGLAHLTPLTALQHLVLARCRNLT 538
Query: 435 DKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 479
D L ++ L L LN+S ++T AGL HL+PL L+ L L C
Sbjct: 539 DAGLAHLTPLETLQHLNLSGGYKLTGAGLAHLRPLVALQHLDLSYC 584
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 102/291 (35%), Positives = 157/291 (53%), Gaps = 33/291 (11%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++T +GL HL + LQ LD + C +++D GL HL L+ L
Sbjct: 386 ELTGAGLAHLTTLTALQHLDLSGCDKLTDVGLAHLTPLTTLQ------------------ 427
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
LDL+RC + + GLV+LK L L+ LN+ C +TD+ + L+ LT L+ L
Sbjct: 428 -------HLDLKRCRNLTNAGLVHLKLLTGLQHLNLSECYHLTDAGLAHLTPLTALQHLD 480
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDD 243
+S CSK+TD G+A+L L L L+L C +T L L+ L +L +L L RC+ L+D
Sbjct: 481 LSQCSKLTDDGLAHLTPLTALQHLDLSQCSKLTDDGLAHLTPLTALQHLVLARCRNLTDA 540
Query: 244 GCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
G + + +L+ LNL G ++T L HL+ L L+ L+L C G+ D GL +LT L
Sbjct: 541 GLAHLTPLETLQHLNLSGGYKLTGAGLAHLRPLVALQHLDLSYCNGLTDAGLAHLTPLVA 600
Query: 302 LKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSL 350
L+ L+LS + +GL HL L L+ ++LS+ G++D L L+++
Sbjct: 601 LQHLDLSYCDGLTDAGLTHLRPLVALQHLDLSYCDGLTDAGLAHFKFLAAI 651
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 103/278 (37%), Positives = 147/278 (52%), Gaps = 39/278 (14%)
Query: 247 KFSKI-----GSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGL 299
+F KI ++ N N +TD L+ LK NL+ L+L+ C I D+GL +LT L
Sbjct: 213 EFEKIIKHFLNEIEAFNFSDNAYLTDAHLLALKDCKNLKVLHLEKCQVITDDGLAHLTPL 272
Query: 300 CNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD- 356
L+ LELSD ++ +GL HL+ LT L+ +NLSF ++D L L L++L+ LNL
Sbjct: 273 TALQHLELSDCRKLTDAGLAHLTPLTALQHLNLSFCDKLTDAGLAHLTPLTALQHLNLSR 332
Query: 357 -ARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSL------EICGGGL 408
++TD GLA LT LT L HL+L F ++TD+G +L+ L+ L E+ G GL
Sbjct: 333 CYYKLTDAGLAHLTPLTALQHLNLSFCDKLTDAGLVHLKLLTGLQHLDLREFWELTGAGL 392
Query: 409 --------------------TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
TD G+ H+ L++L L+L + NLT+ L + LTGL
Sbjct: 393 AHLTTLTALQHLDLSGCDKLTDVGLAHLTPLTTLQHLDLKRCRNLTNAGLVHLKLLTGLQ 452
Query: 449 SLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 485
LN+S +T AGL HL PL L+ L L C +D
Sbjct: 453 HLNLSECYHLTDAGLAHLTPLTALQHLDLSQCSKLTDD 490
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 91/175 (52%), Gaps = 4/175 (2%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
ALQ L L Q + D + + + ++L +DLS S +TD GL HL + LQ L
Sbjct: 475 ALQHLDLSQCSKLTDDGLAHL-TPLTALQHLDLSQCSKLTDDGLAHLTPLTALQHLVLAR 533
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
C ++D GL HL L L L+ +T G+ L+ L LDL C + GL
Sbjct: 534 CRNLTDAGLAHLTPLETLQHLNLSGGYKLTGAGLAHLRPLVALQHLDLSYCNGLTDAGLA 593
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGL 203
+L L+ L+ L++ +C+ +TD+ + L L L+ L +S C +TD+G+A+ K L
Sbjct: 594 HLTPLVALQHLDLSYCDGLTDAGLTHLRPLVALQHLDLSYCDGLTDAGLAHFKFL 648
>gi|46446910|ref|YP_008275.1| hypothetical protein pc1276 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400551|emb|CAF24000.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 667
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 154/442 (34%), Positives = 240/442 (54%), Gaps = 36/442 (8%)
Query: 66 GSDVTDSGLIHLKDCSN-LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
S VT+ I LK SN ++ L+F+ I ++D L L+ NL +L + + +T G+
Sbjct: 243 ASHVTEFEKI-LKHFSNEIERLNFSKNIFLTDAHLLALKNCKNLKALHLQECDKLTDAGL 301
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
A L+ L L+L C + GL +L LM L+ LN+ C+ ITD+ + L+ L L+
Sbjct: 302 AHLASLMALQHLNLNGCWELTDAGLAHLASLMALQHLNLAKCHKITDAGLAHLTSLVALQ 361
Query: 184 SLQISCSK-VTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-L 240
L +SC + +TD+G+ +L+ L LT LNL C +T A L L++L +L +L+L+ C+ L
Sbjct: 362 HLDLSCCRNLTDAGLTHLRPLVALTHLNLAKCHKITDAGLAHLTSLVALQHLDLSYCEKL 421
Query: 241 SDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 298
+D G + + +L+ L+L + + T+ L HL L L+ LNL+SC D GL +LT
Sbjct: 422 TDAGLAHLTPLVALQHLDLSYSHHFTNAGLAHLTSLVALQHLNLNSCYKFTDAGLAHLTS 481
Query: 299 LCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
L L+ L+LS + + +GL HL+ L L+ ++LS++
Sbjct: 482 LVALQHLDLSCCRNLTDAGLAHLAPLVALQHLDLSYS----------------------- 518
Query: 358 RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKH 415
T+ GLA LTSL L HLDL R +TD+G A+L + L+ L++ LTDAG++H
Sbjct: 519 HHFTNAGLAHLTSLVALQHLDLSCCRNLTDAGLAHLTSLVALQHLDLSSCKKLTDAGLEH 578
Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSL 474
+ L +L L+LS LTD L ++ L L L++S+ ++T AGL HL PL L+ L
Sbjct: 579 LTPLVALQHLDLSSCKKLTDAGLAHLAPLVALQHLDLSSCKKLTDAGLAHLAPLVALQHL 638
Query: 475 TLESC-KVTANDIKRLQSRDLP 495
L C K+T + +S P
Sbjct: 639 NLNWCDKLTDAGVAHFKSSVAP 660
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 136/370 (36%), Positives = 205/370 (55%), Gaps = 13/370 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL HL LQ L+ N C +++D GL HL L L L+ + + IT G+
Sbjct: 296 LTDAGLAHLASLMALQHLNLNGCWELTDAGLAHLASLMALQHLNLAKCHKITDAGLAHLT 355
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ L LDL C + GL +L+ L+ L LN+ C+ ITD+ + L+ L L+ L +
Sbjct: 356 SLVALQHLDLSCCRNLTDAGLTHLRPLVALTHLNLAKCHKITDAGLAHLTSLVALQHLDL 415
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLE-GCPVTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
S C K+TD+G+A+L L L L+L T A L L++L +L +LNLN C + +D G
Sbjct: 416 SYCEKLTDAGLAHLTPLVALQHLDLSYSHHFTNAGLAHLTSLVALQHLNLNSCYKFTDAG 475
Query: 245 CEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLD-SCGIGDEGLVNLTGLCNL 302
+ + +L+ L+L +TD L HL L L+ L+L S + GL +LT L L
Sbjct: 476 LAHLTSLVALQHLDLSCCRNLTDAGLAHLAPLVALQHLDLSYSHHFTNAGLAHLTSLVAL 535
Query: 303 KCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQ 359
+ L+LS + + +GL HL+ L L+ ++LS ++D L L L +L+ L+L + ++
Sbjct: 536 QHLDLSCCRNLTDAGLAHLTSLVALQHLDLSSCKKLTDAGLEHLTPLVALQHLDLSSCKK 595
Query: 360 ITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIK 417
+TD GLA L L L HLDL ++TD+G A+L L+ L + LTDAGV H K
Sbjct: 596 LTDAGLAHLAPLVALQHLDLSSCKKLTDAGLAHLAPLVALQHLNLNWCDKLTDAGVAHFK 655
Query: 418 DLSSLTLLNL 427
SS+ L+L
Sbjct: 656 --SSVAPLHL 663
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 131/387 (33%), Positives = 217/387 (56%), Gaps = 13/387 (3%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL 77
LT+ L A ++C L+ L L + + D + +AS + L ++L+G ++TD+GL HL
Sbjct: 271 LTDAHLLALKNCKNLKALHLQECDKLTDAGLAHLASLMA-LQHLNLNGCWELTDAGLAHL 329
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
LQ L+ C +I+D GL HL L L L +T G+ L+ L L+
Sbjct: 330 ASLMALQHLNLAKCHKITDAGLAHLTSLVALQHLDLSCCRNLTDAGLTHLRPLVALTHLN 389
Query: 138 LERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTDS 195
L +C +I GL +L L+ L+ L++ +C +TD+ + L+ L L+ L +S S T++
Sbjct: 390 LAKCHKITDAGLAHLTSLVALQHLDLSYCEKLTDAGLAHLTPLVALQHLDLSYSHHFTNA 449
Query: 196 GIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGS 253
G+A+L L L LNL C T A L L++L +L +L+L+ C+ L+D G + + +
Sbjct: 450 GLAHLTSLVALQHLNLNSCYKFTDAGLAHLTSLVALQHLDLSCCRNLTDAGLAHLAPLVA 509
Query: 254 LKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-T 310
L+ L+L + + T+ L HL L L+ L+L C + D GL +LT L L+ L+LS
Sbjct: 510 LQHLDLSYSHHFTNAGLAHLTSLVALQHLDLSCCRNLTDAGLAHLTSLVALQHLDLSSCK 569
Query: 311 QVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAAL 368
++ +GL HL+ L L+ ++LS ++D L LA L +L+ L+L + +++TD GLA L
Sbjct: 570 KLTDAGLEHLTPLVALQHLDLSSCKKLTDAGLAHLAPLVALQHLDLSSCKKLTDAGLAHL 629
Query: 369 TSLTGLTHLDL-FGARITDSGAAYLRN 394
L L HL+L + ++TD+G A+ ++
Sbjct: 630 APLVALQHLNLNWCDKLTDAGVAHFKS 656
>gi|46447590|ref|YP_008955.1| hypothetical protein pc1956 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401231|emb|CAF24680.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 659
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 151/410 (36%), Positives = 225/410 (54%), Gaps = 12/410 (2%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
+ +TD+ L+ LK+C NL+ L C ++D GL HL L L L+ + +T G+
Sbjct: 234 ENAHLTDAHLLALKNCKNLKELHLQECRNLTDAGLVHLAPLVALKHLNLNFCDKLTNTGL 293
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
L L L+L C + GL +L L L+ LN+ +C+ +TD+ + LS LT L+
Sbjct: 294 AHLRPLTALQHLNLGNCRNLTDAGLAHLTPLTALQHLNLNFCDKLTDTGLVRLSPLTALQ 353
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QL 240
L +S C +TD+G+ +LK L L LNL C +T A L L L +L +L+L+ C L
Sbjct: 354 HLDLSDCENLTDAGLVHLKPLVALQHLNLSCCENLTDAGLVHLKLLVALQHLDLSDCNNL 413
Query: 241 SDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 298
+D G + + +L+ L+L + N +TD LVHLK LT L+ L+L C + D+GL +LT
Sbjct: 414 TDAGLAHLTPLTALQYLDLSYCNNLTDAGLVHLKFLTALQHLDLRGCDKVADDGLAHLTP 473
Query: 299 LCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD 356
L L+ L LS + + +GL HL LT L+ + LS ++D L L L +L+ L+L
Sbjct: 474 LTALQALSLSQCRNLTDAGLGHLKLLTALQYLRLSQCWNLTDAGLIHLRPLVALQHLDLS 533
Query: 357 A-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGV 413
+TD GL LT L L HLDL + +T G A+LR+ L+ L + LTDAG+
Sbjct: 534 YCGNLTDVGLVHLTPLMALQHLDLNYCENLTGDGLAHLRSLTTLQHLSLNQCWNLTDAGL 593
Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGL 462
H++ L++L L+LS N TD L ++ L L LN+ R+T GL
Sbjct: 594 VHLEPLTALQHLDLSYCGNFTDVGLVHLTSLMALQHLNLRGCDRVTDVGL 643
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 139/384 (36%), Positives = 213/384 (55%), Gaps = 12/384 (3%)
Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN 166
+ +L+F N +T + A NL +L L+ C + GLV+L L+ L+ LN+ +C+
Sbjct: 227 IEALNFSENAHLTDAHLLALKNCKNLKELHLQECRNLTDAGLVHLAPLVALKHLNLNFCD 286
Query: 167 CITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSL 224
+T++ + L LT L+ L + +C +TD+G+A+L L L LNL C +T L L
Sbjct: 287 KLTNTGLAHLRPLTALQHLNLGNCRNLTDAGLAHLTPLTALQHLNLNFCDKLTDTGLVRL 346
Query: 225 SALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLN 282
S L +L +L+L+ C+ L+D G + +L+ LNL E +TD LVHLK L L+ L+
Sbjct: 347 SPLTALQHLDLSDCENLTDAGLVHLKPLVALQHLNLSCCENLTDAGLVHLKLLVALQHLD 406
Query: 283 LDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDG 339
L C + D GL +LT L L+ L+LS + +GL HL LT L+ ++L ++D
Sbjct: 407 LSDCNNLTDAGLAHLTPLTALQYLDLSYCNNLTDAGLVHLKFLTALQHLDLRGCDKVADD 466
Query: 340 SLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKN 397
L L L++L++L+L R +TD GL L LT L +L L +TD+G +LR
Sbjct: 467 GLAHLTPLTALQALSLSQCRNLTDAGLGHLKLLTALQYLRLSQCWNLTDAGLIHLRPLVA 526
Query: 398 LRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-S 455
L+ L++ G LTD G+ H+ L +L L+L+ NLT L + LT L L+++
Sbjct: 527 LQHLDLSYCGNLTDVGLVHLTPLMALQHLDLNYCENLTGDGLAHLRSLTTLQHLSLNQCW 586
Query: 456 RITSAGLRHLKPLKNLRSLTLESC 479
+T AGL HL+PL L+ L L C
Sbjct: 587 NLTDAGLVHLEPLTALQHLDLSYC 610
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 124/368 (33%), Positives = 182/368 (49%), Gaps = 56/368 (15%)
Query: 46 DKWMD---VIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
DK D V S ++L +DLS ++TD+GL+HLK LQ L+ + C ++D GL H
Sbjct: 336 DKLTDTGLVRLSPLTALQHLDLSDCENLTDAGLVHLKPLVALQHLNLSCCENLTDAGLVH 395
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESL 160
L+ L L L N +T G+ L L LDL C + GLV+LK L L+ L
Sbjct: 396 LKLLVALQHLDLSDCNNLTDAGLAHLTPLTALQYLDLSYCNNLTDAGLVHLKFLTALQHL 455
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTA 218
+++ C+ + D + L+ LT L++L +S C +TD+G+ +LK L L L L C +T
Sbjct: 456 DLRGCDKVADDGLAHLTPLTALQALSLSQCRNLTDAGLGHLKLLTALQYLRLSQCWNLTD 515
Query: 219 ACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLT 276
A L L L +L +L+L+ C L+D G + + +L+ L+L + E +T + L HL+ LT
Sbjct: 516 AGLIHLRPLVALQHLDLSYCGNLTDVGLVHLTPLMALQHLDLNYCENLTGDGLAHLRSLT 575
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
L+ L+L+ C NLT +GL HL LT L+ ++LS+ G
Sbjct: 576 TLQHLSLNQCW-------NLT----------------DAGLVHLEPLTALQHLDLSYCG- 611
Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNF 395
TD GL LTSL L HL+L G R+TD G A + F
Sbjct: 612 ----------------------NFTDVGLVHLTSLMALQHLNLRGCDRVTDVGLALFKIF 649
Query: 396 KNLRSLEI 403
L+I
Sbjct: 650 ATSLHLKI 657
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 98/252 (38%), Positives = 143/252 (56%), Gaps = 13/252 (5%)
Query: 247 KFSKI-----GSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 299
+F +I ++ LN N +TD L+ LK NL+ L+L C + D GLV+L L
Sbjct: 215 EFQRIINQFSNEIEALNFSENAHLTDAHLLALKNCKNLKELHLQECRNLTDAGLVHLAPL 274
Query: 300 CNLKCLELSD-TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLD- 356
LK L L+ ++ ++GL HL LT L+ +NL + ++D L L L++L+ LNL+
Sbjct: 275 VALKHLNLNFCDKLTNTGLAHLRPLTALQHLNLGNCRNLTDAGLAHLTPLTALQHLNLNF 334
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVK 414
++TDTGL L+ LT L HLDL +TD+G +L+ L+ L + C LTDAG+
Sbjct: 335 CDKLTDTGLVRLSPLTALQHLDLSDCENLTDAGLVHLKPLVALQHLNLSCCENLTDAGLV 394
Query: 415 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRS 473
H+K L +L L+LS NLTD L ++ LT L L++S + +T AGL HLK L L+
Sbjct: 395 HLKLLVALQHLDLSDCNNLTDAGLAHLTPLTALQYLDLSYCNNLTDAGLVHLKFLTALQH 454
Query: 474 LTLESCKVTAND 485
L L C A+D
Sbjct: 455 LDLRGCDKVADD 466
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 123/248 (49%), Gaps = 32/248 (12%)
Query: 261 FNEITDECLVHLKG--LTNLESLNLDSCGIGDEGLVNLTGLCNL--KC--------LELS 308
+ E+T E + HL+G + +S + +E LV L L N +C LE S
Sbjct: 143 YYEVT-EVVKHLEGQLIIGYKSQRFEPFNSTEESLVELKELLNFAHRCQLNTLKNYLEFS 201
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTG------------ISDGSLRKLAGLSSLKSLNL- 355
V S+ L S LT + I F+ ++D L L +LK L+L
Sbjct: 202 ---VTSALLNQTSQLTEFQRIINQFSNEIEALNFSENAHLTDAHLLALKNCKNLKELHLQ 258
Query: 356 DARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGV 413
+ R +TD GL L L L HL+L F ++T++G A+LR L+ L + LTDAG+
Sbjct: 259 ECRNLTDAGLVHLAPLVALKHLNLNFCDKLTNTGLAHLRPLTALQHLNLGNCRNLTDAGL 318
Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLR 472
H+ L++L LNL+ LTD L +S LT L L++S+ +T AGL HLKPL L+
Sbjct: 319 AHLTPLTALQHLNLNFCDKLTDTGLVRLSPLTALQHLDLSDCENLTDAGLVHLKPLVALQ 378
Query: 473 SLTLESCK 480
L L C+
Sbjct: 379 HLNLSCCE 386
>gi|306012339|gb|ADM75223.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012351|gb|ADM75229.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012359|gb|ADM75233.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012371|gb|ADM75239.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012381|gb|ADM75244.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012391|gb|ADM75249.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012395|gb|ADM75251.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012397|gb|ADM75252.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012401|gb|ADM75254.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012403|gb|ADM75255.1| leucine rich repeat-like protein, partial [Picea sitchensis]
Length = 137
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/135 (68%), Positives = 114/135 (84%)
Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
ALTSLTGLTHLDLFGARITD G + LR FK L+SLE+CGG +TDAGVK+IKDL+S+ LN
Sbjct: 1 ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLN 60
Query: 427 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 486
LSQN +LTD LE ISG+T LVSLN+SN+R+T+AGL+HL+PLKNL SL+L++CKVT +I
Sbjct: 61 LSQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEI 120
Query: 487 KRLQSRDLPNLVSFR 501
++LQ+ LPNL R
Sbjct: 121 RKLQATALPNLAGVR 135
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 3/135 (2%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ LT L L + +++TD G + L+ +KL L L G +T A + ++ L S+ LNL
Sbjct: 2 LTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNL 61
Query: 236 NR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
++ L+D E S + +L LN+ +T+ L HL+ L NL SL+L +C + +
Sbjct: 62 SQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEIR 121
Query: 295 NL--TGLCNLKCLEL 307
L T L NL + L
Sbjct: 122 KLQATALPNLAGVRL 136
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
L +LTGL +L T G+S LR+ L+S+ L I+D ++ + L+S+
Sbjct: 1 ALTSLTGLTHLDLFGARITDYGTSCLRYFK---KLQSLELCGGSITDAGVKNIKDLTSMM 57
Query: 352 SLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
SLNL +TD L +++ +T L L++ R+T++G +LR KNL SL + +T
Sbjct: 58 SLNLSQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT- 116
Query: 411 AGVKHIKDLSSLTLLNLS 428
I+ L + L NL+
Sbjct: 117 --WPEIRKLQATALPNLA 132
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
L L GL++L R IT G L L+L + G+ N+K L +
Sbjct: 1 ALTSLTGLTHLDLFGAR----ITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSM 56
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
SLN+ + +TD ++ +SG+T L SL IS ++VT++G+ +L+ L+ LT L+L+ C VT
Sbjct: 57 MSLNLSQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT 116
Query: 218 AACLDSLSA 226
+ L A
Sbjct: 117 WPEIRKLQA 125
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 77/137 (56%), Gaps = 3/137 (2%)
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
+L++L L +L+L +++D G L+ L L ITD + ++K LT++ SLN
Sbjct: 1 ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLN 60
Query: 283 L-DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
L + + D L +++G+ L L +S+T+V ++GL+HL L NL S++L ++ +
Sbjct: 61 LSQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEI 120
Query: 342 RKL--AGLSSLKSLNLD 356
RKL L +L + LD
Sbjct: 121 RKLQATALPNLAGVRLD 137
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
L LT L L+L I D G L L+ LEL + +G++++ LT++ S+NL
Sbjct: 2 LTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNL 61
Query: 332 SF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
S + ++DG+L ++G+++L SLN+ ++T+ GL L L LT L L ++T
Sbjct: 62 SQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT 116
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 78/134 (58%), Gaps = 6/134 (4%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRR 115
+ L +DL G+ +TD G L+ LQSL+ C I+D G+++++ L+++ SL+ +
Sbjct: 6 TGLTHLDLFGARITDYGTSCLRYFKKLQSLE--LCGGSITDAGVKNIKDLTSMMSLNLSQ 63
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N+ +T +++ +G+ LV L++ + GL +L+ L L SL+++ C +T +++
Sbjct: 64 NSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACK-VTWPEIRK 122
Query: 176 L--SGLTNLKSLQI 187
L + L NL +++
Sbjct: 123 LQATALPNLAGVRL 136
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN-CITDSDMKPLSGLTNLKS 184
A L L LDL G L+ KL+SL + C ITD+ +K + LT++ S
Sbjct: 1 ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLEL--CGGSITDAGVKNIKDLTSMMS 58
Query: 185 LQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L +S S +TD + + G+ L LN+ VT A L L L +L L+L C+++
Sbjct: 59 LNLSQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWP 118
Query: 244 GCEKF 248
K
Sbjct: 119 EIRKL 123
>gi|46447588|ref|YP_008953.1| hypothetical protein pc1954 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401229|emb|CAF24678.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 704
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 160/468 (34%), Positives = 244/468 (52%), Gaps = 38/468 (8%)
Query: 51 VIASQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLT 109
+I + +++ S +D +TD+ L+ L++C NL+ L N C I+D GL HL L+ L
Sbjct: 188 IIIPFSKEIEALNFSNNDYLTDAHLLTLRNCENLKVLHLNACQAITDDGLAHLTPLTGLQ 247
Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI------------------------- 144
L R +T G+ L L L+L C +
Sbjct: 248 HLDIRVCEYLTDDGLAYLTSLTGLQHLNLSGCYHLTDTGLAHLTPLTGLQHLDLRICEYL 307
Query: 145 -HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKG 202
GL +LK L L+ L++ +C +T+ + L+ LT L+ L +S C ++ D+G+ YL
Sbjct: 308 TATGLAHLKPLKALQHLDLSYCKNLTNVGLSHLAPLTALQHLDLSYCWQLADAGLVYLTP 367
Query: 203 LQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL- 259
L L L+L G +T A L L+ L +L L+L+ C+ L+D G + +L+ LNL
Sbjct: 368 LTGLQHLDLSGYHKLTDAGLAHLTPLTALQCLDLSYCENLTDVGLAHLMPLKALQHLNLR 427
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ-VGSSGL 317
+TD+ L HL LT L+ L+L C + D GL +LT L L+ L+LS + + GL
Sbjct: 428 NCRNLTDDGLAHLAPLTALQHLDLSYCWQLTDAGLAHLTPLTGLQRLDLSYCENLTDVGL 487
Query: 318 RHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLT 375
HL L L+ +NL + ++D L LA L++L+ L+L D +TD GLA LT LT L
Sbjct: 488 AHLIPLKALQHLNLRNCRNLTDDGLVHLAPLTALQHLDLSDCNNLTDAGLAHLTPLTALQ 547
Query: 376 HLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
HLDL + +T +G A+L L+ L++ L DAG+ H+K L++L L LS NL
Sbjct: 548 HLDLKYCINLTGAGLAHLAFLTGLQYLDLSWCKNLIDAGLVHLKLLTALQYLGLSYCENL 607
Query: 434 TDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCK 480
TD L + LT L L + + + +T AGL HL+ L +L+ L L C+
Sbjct: 608 TDDGLAHLRSLTALQHLALIHYKNLTDAGLVHLRSLTSLQHLDLRYCQ 655
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 156/432 (36%), Positives = 233/432 (53%), Gaps = 16/432 (3%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
+ L ++LSG +TD+GL HL + LQ LD C ++ GL HL+ L L L
Sbjct: 269 TGLQHLNLSGCYHLTDTGLAHLTPLTGLQHLDLRICEYLTATGLAHLKPLKALQHLDLSY 328
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+T G+ A L L LDL C ++ GLV L L L+ L++ + +TD+ +
Sbjct: 329 CKNLTNVGLSHLAPLTALQHLDLSYCWQLADAGLVYLTPLTGLQHLDLSGYHKLTDAGLA 388
Query: 175 PLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFY 232
L+ LT L+ L +S C +TD G+A+L L+ L LNL C +T L L+ L +L +
Sbjct: 389 HLTPLTALQCLDLSYCENLTDVGLAHLMPLKALQHLNLRNCRNLTDDGLAHLAPLTALQH 448
Query: 233 LNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC-GIG 289
L+L+ C QL+D G + + L+ L+L + E +TD L HL L L+ LNL +C +
Sbjct: 449 LDLSYCWQLTDAGLAHLTPLTGLQRLDLSYCENLTDVGLAHLIPLKALQHLNLRNCRNLT 508
Query: 290 DEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGL 347
D+GLV+L L L+ L+LSD + +GL HL+ LT L+ ++L + ++ L LA L
Sbjct: 509 DDGLVHLAPLTALQHLDLSDCNNLTDAGLAHLTPLTALQHLDLKYCINLTGAGLAHLAFL 568
Query: 348 SSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLE-IC 404
+ L+ L+L + + D GL L LT L +L L + +TD G A+LR+ L+ L I
Sbjct: 569 TGLQYLDLSWCKNLIDAGLVHLKLLTALQYLGLSYCENLTDDGLAHLRSLTALQHLALIH 628
Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLR 463
LTDAG+ H++ L+SL L+L NLT L + LT L L ++ + +T GL
Sbjct: 629 YKNLTDAGLVHLRSLTSLQHLDLRYCQNLTGDGLAHLRTLTALQYLALTQYKNLTDDGLA 688
Query: 464 HLKPLK---NLR 472
K L NLR
Sbjct: 689 RFKTLASSTNLR 700
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 126/376 (33%), Positives = 193/376 (51%), Gaps = 12/376 (3%)
Query: 13 ELVYSRCLTEVSLEAFRD-CALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVT 70
+L Y + LT V L ALQ L L + D + V + + L +DLSG +T
Sbjct: 325 DLSYCKNLTNVGLSHLAPLTALQHLDLSYCWQLADAGL-VYLTPLTGLQHLDLSGYHKLT 383
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D+GL HL + LQ LD ++C ++D GL HL L L L+ R +T G+ A L
Sbjct: 384 DAGLAHLTPLTALQCLDLSYCENLTDVGLAHLMPLKALQHLNLRNCRNLTDDGLAHLAPL 443
Query: 131 INLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-S 188
L LDL C ++ GL +L L L+ L++ +C +TD + L L L+ L + +
Sbjct: 444 TALQHLDLSYCWQLTDAGLAHLTPLTGLQRLDLSYCENLTDVGLAHLIPLKALQHLNLRN 503
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCE 246
C +TD G+ +L L L L+L C +T A L L+ L +L +L+L C L+ G
Sbjct: 504 CRNLTDDGLVHLAPLTALQHLDLSDCNNLTDAGLAHLTPLTALQHLDLKYCINLTGAGLA 563
Query: 247 KFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKC 304
+ + L+ L+L + + D LVHLK LT L+ L L C + D+GL +L L L+
Sbjct: 564 HLAFLTGLQYLDLSWCKNLIDAGLVHLKLLTALQYLGLSYCENLTDDGLAHLRSLTALQH 623
Query: 305 LELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQIT 361
L L + + +GL HL LT+L+ ++L + ++ L L L++L+ L L + +T
Sbjct: 624 LALIHYKNLTDAGLVHLRSLTSLQHLDLRYCQNLTGDGLAHLRTLTALQYLALTQYKNLT 683
Query: 362 DTGLAALTSLTGLTHL 377
D GLA +L T+L
Sbjct: 684 DDGLARFKTLASSTNL 699
>gi|46446667|ref|YP_008032.1| hypothetical protein pc1033 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400308|emb|CAF23757.1| hypothetical protein pc1033 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 662
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 155/461 (33%), Positives = 243/461 (52%), Gaps = 38/461 (8%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
++D++ +I + + ++L + ++ + LK C NL+ L F C ++D GL HL
Sbjct: 212 LSDEFGRIINHFSNEIKILNLPNKILNNACFLALKSCENLKVLHFKECRHLTDAGLAHLT 271
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNI 162
L+ L L L +C R+ + GL +L L L+ LN+
Sbjct: 272 PLTALQHLG-------------------------LGQCWRLTNAGLAHLTPLTALQYLNL 306
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAAC 220
+TD+ + L+ LT L+ L +S C +TD+G+A+L L L L+L GC +T A
Sbjct: 307 SEYKNLTDAGLAHLTPLTALQHLGLSGCQNLTDAGLAHLTPLMGLQHLDLSGCQNLTDAG 366
Query: 221 LDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNL 278
L L+ L L +LNL+RC +L+D G + + L+ L+L G +TD L HL LT L
Sbjct: 367 LAHLTPLTGLQHLNLSRCNKLTDAGLAHLTPLTGLQHLDLSGCQNLTDAGLAHLTPLTGL 426
Query: 279 ESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TG 335
+ L+L C + D GL +LT L L+ L L + + +GL HL+ L+ L+ +NLS
Sbjct: 427 QHLDLSGCQNLTDAGLAHLTPLTGLQHLNLCNCRKFTDNGLAHLTPLSVLQHLNLSRCNK 486
Query: 336 ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLR 393
++D L L L++L+ L+L + +TD GLA LT LT L HL L ++TD+G +L+
Sbjct: 487 LTDVGLAHLTPLTALQHLDLSSCYNLTDVGLAHLTPLTSLQHLGLISCDKLTDAGLVHLK 546
Query: 394 NFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
L+ L + LTDAG+ H+ L++L L L+ LTD L ++ LT L L++
Sbjct: 547 LLTGLQHLNLSNCKNLTDAGLAHLTPLTALQYLYLNWCRKLTDAGLAHLTSLTALQHLDL 606
Query: 453 SNSR-ITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQS 491
+ +T AGL HL PL LR L L C ++T + R ++
Sbjct: 607 RYCQNLTDAGLAHLTPLTGLRHLDLSQCWRLTKAGLARFKT 647
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 146/396 (36%), Positives = 217/396 (54%), Gaps = 13/396 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL HL + LQ L C ++++ GL HL L+ L L+ +T G+
Sbjct: 262 LTDAGLAHLTPLTALQHLGLGQCWRLTNAGLAHLTPLTALQYLNLSEYKNLTDAGLAHLT 321
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L L L C + GL +L LM L+ L++ C +TD+ + L+ LT L+ L +
Sbjct: 322 PLTALQHLGLSGCQNLTDAGLAHLTPLMGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLNL 381
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDG 244
S C+K+TD+G+A+L L L L+L GC +T A L L+ L L +L+L+ CQ L+D G
Sbjct: 382 SRCNKLTDAGLAHLTPLTGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLDLSGCQNLTDAG 441
Query: 245 CEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNL 302
+ + L+ LNL + TD L HL L+ L+ LNL C + D GL +LT L L
Sbjct: 442 LAHLTPLTGLQHLNLCNCRKFTDNGLAHLTPLSVLQHLNLSRCNKLTDVGLAHLTPLTAL 501
Query: 303 KCLELSD-TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL-DARQ 359
+ L+LS + GL HL+ LT+L+ + L S ++D L L L+ L+ LNL + +
Sbjct: 502 QHLDLSSCYNLTDVGLAHLTPLTSLQHLGLISCDKLTDAGLVHLKLLTGLQHLNLSNCKN 561
Query: 360 ITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHI 416
+TD GLA LT LT L +L L R +TD+G A+L + L+ L++ C LTDAG+ H+
Sbjct: 562 LTDAGLAHLTPLTALQYLYLNWCRKLTDAGLAHLTSLTALQHLDLRYC-QNLTDAGLAHL 620
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
L+ L L+LSQ LT L L ++L +
Sbjct: 621 TPLTGLRHLDLSQCWRLTKAGLARFKTLAASLNLEI 656
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 135/381 (35%), Positives = 200/381 (52%), Gaps = 33/381 (8%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
ALQ L L +Y + D + + ++L + LSG ++TD+GL HL LQ LD +
Sbjct: 300 ALQYLNLSEYKNLTDAGLAHLTPL-TALQHLGLSGCQNLTDAGLAHLTPLMGLQHLDLSG 358
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
C ++D GL HL L+ L L+ R N +T G+ L L LDL C + GL
Sbjct: 359 CQNLTDAGLAHLTPLTGLQHLNLSRCNKLTDAGLAHLTPLTGLQHLDLSGCQNLTDAGLA 418
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTL 208
+L L L+ L++ C +TD+ + L+ LT L+ L + +C K TD+G+A+L L L
Sbjct: 419 HLTPLTGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLNLCNCRKFTDNGLAHLTPLSVLQH 478
Query: 209 LNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEIT 265
LNL C +T L L+ L +L +L+L+ C L+D G + + SL+ L L +++T
Sbjct: 479 LNLSRCNKLTDVGLAHLTPLTALQHLDLSSCYNLTDVGLAHLTPLTSLQHLGLISCDKLT 538
Query: 266 DECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGL 323
D LVHLK LT L+ LNL +C + D GL +LT L L+ L L+ ++ +GL HL+ L
Sbjct: 539 DAGLVHLKLLTGLQHLNLSNCKNLTDAGLAHLTPLTALQYLYLNWCRKLTDAGLAHLTSL 598
Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA- 382
T L+ ++L + + +TD GLA LT LTGL HLDL
Sbjct: 599 TALQHLDLRY-----------------------CQNLTDAGLAHLTPLTGLRHLDLSQCW 635
Query: 383 RITDSGAAYLRNFKNLRSLEI 403
R+T +G A + +LEI
Sbjct: 636 RLTKAGLARFKTLAASLNLEI 656
>gi|149174587|ref|ZP_01853213.1| hypothetical protein PM8797T_09949 [Planctomyces maris DSM 8797]
gi|148846697|gb|EDL61034.1| hypothetical protein PM8797T_09949 [Planctomyces maris DSM 8797]
Length = 540
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 147/455 (32%), Positives = 227/455 (49%), Gaps = 21/455 (4%)
Query: 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
+ +D ++++ I + NL+S+ I +GG +H+ GL NL LS R I
Sbjct: 88 VELDFEFGELSEEDFIAISQLKNLKSIHL-LITTIEEGGRKHITGLQNLELLSLR-GTTI 145
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI-------------KWCN 166
T +K L NL KL+L GL +L+GL +L L + K N
Sbjct: 146 TDSDLKYVGALKNLQKLNLNNTAISDAGLAHLRGLSELRVLELEGTQLDGTGLVYLKHLN 205
Query: 167 CITDSDMKPLS----GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
+ + D+ + G + +S ++ D+G+ ++ L+ L L+L G ++ L
Sbjct: 206 HLEELDLDNYNNNFVGWNDGESENEPRPQIRDAGLKHIGKLKHLKKLSLFGAEISDVGLA 265
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
L L L L R +SD G + +L L L + ++D LVHL L L+SL+
Sbjct: 266 HLQDLKKLESLEFARENISDKGVAHLKGLLNLTSLRLDGSRVSDAGLVHLAKLQKLQSLD 325
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
L + I D GL++L L +LK L+LSDT V GL HLS L NLES+ L T +S L
Sbjct: 326 LGNTSISDTGLIHLQELTSLKSLDLSDTAVSDDGLIHLSRLQNLESLYLRSTNLSGVGLS 385
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
L LS L+ L++ ++ D GL A+ L L L LF ITD G +L NL+ L+
Sbjct: 386 SLKNLSMLQYLDMGYSKMNDQGLIAVAELGSLDSLGLFATPITDQGLVHLSGLTNLKKLD 445
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ ++DAG+ H+ L+ L +L+L + +TD L + GL L L + + ++ AGL
Sbjct: 446 LQETSISDAGLVHLSHLAGLKVLDL-EGTRITDAGLIHLQGLNELEQLELDKTAVSDAGL 504
Query: 463 RHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 497
+HLK L L+ L E ++T I L+ + LP+L
Sbjct: 505 KHLKGLTKLQFLQYEETQITEAGINDLR-QSLPDL 538
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 124/350 (35%), Positives = 182/350 (52%), Gaps = 43/350 (12%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFN--------------------------- 89
S L ++L G+ + +GL++LK ++L+ LD +
Sbjct: 181 SELRVLELEGTQLDGTGLVYLKHLNHLEELDLDNYNNNFVGWNDGESENEPRPQIRDAGL 240
Query: 90 --------------FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
F +ISD GL HL+ L L SL F R N I+ +G+ GL+NL
Sbjct: 241 KHIGKLKHLKKLSLFGAEISDVGLAHLQDLKKLESLEFAREN-ISDKGVAHLKGLLNLTS 299
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
L L+ GLV+L L KL+SL++ I+D+ + L LT+LKSL +S + V+D
Sbjct: 300 LRLDGSRVSDAGLVHLAKLQKLQSLDLG-NTSISDTGLIHLQELTSLKSLDLSDTAVSDD 358
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ +L LQ L L L ++ L SL L L YL++ +++D G +++GSL
Sbjct: 359 GLIHLSRLQNLESLYLRSTNLSGVGLSSLKNLSMLQYLDMGYSKMNDQGLIAVAELGSLD 418
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
L L ITD+ LVHL GLTNL+ L+L I D GLV+L+ L LK L+L T++ +
Sbjct: 419 SLGLFATPITDQGLVHLSGLTNLKKLDLQETSISDAGLVHLSHLAGLKVLDLEGTRITDA 478
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
GL HL GL LE + L T +SD L+ L GL+ L+ L + QIT+ G+
Sbjct: 479 GLIHLQGLNELEQLELDKTAVSDAGLKHLKGLTKLQFLQYEETQITEAGI 528
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 139/435 (31%), Positives = 222/435 (51%), Gaps = 45/435 (10%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
G E G L F ++ + A + L NL + L T GG ++ GL L
Sbjct: 77 GEEKFLGFMTAVELDFEFGE-LSEEDFIAISQLKNLKSIHLLITTIEEGGRKHITGLQNL 135
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
E L+++ ITDSD+K + L NL+ L ++ + ++D+G+A+L+GL +L +L LEG +
Sbjct: 136 ELLSLR-GTTITDSDLKYVGALKNLQKLNLNNTAISDAGLAHLRGLSELRVLELEGTQLD 194
Query: 218 AACLDSLSALGSLFYLNLN------------------RCQLSDDGCE------------- 246
L L L L L+L+ R Q+ D G +
Sbjct: 195 GTGLVYLKHLNHLEELDLDNYNNNFVGWNDGESENEPRPQIRDAGLKHIGKLKHLKKLSL 254
Query: 247 ---KFSKIG--------SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
+ S +G L+ L I+D+ + HLKGL NL SL LD + D GLV+
Sbjct: 255 FGAEISDVGLAHLQDLKKLESLEFARENISDKGVAHLKGLLNLTSLRLDGSRVSDAGLVH 314
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
L L L+ L+L +T + +GL HL LT+L+S++LS T +SD L L+ L +L+SL L
Sbjct: 315 LAKLQKLQSLDLGNTSISDTGLIHLQELTSLKSLDLSDTAVSDDGLIHLSRLQNLESLYL 374
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
+ ++ GL++L +L+ L +LD+ +++ D G + +L SL + +TD G+ H
Sbjct: 375 RSTNLSGVGLSSLKNLSMLQYLDMGYSKMNDQGLIAVAELGSLDSLGLFATPITDQGLVH 434
Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
+ L++L L+L Q +++D L +S L GL L++ +RIT AGL HL+ L L L
Sbjct: 435 LSGLTNLKKLDL-QETSISDAGLVHLSHLAGLKVLDLEGTRITDAGLIHLQGLNELEQLE 493
Query: 476 LESCKVTANDIKRLQ 490
L+ V+ +K L+
Sbjct: 494 LDKTAVSDAGLKHLK 508
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 99/192 (51%), Gaps = 32/192 (16%)
Query: 13 ELVYSRC--LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDV 69
E +Y R L+ V L + ++ + LQ L +G Y +ND+ + +A GS L S+ L + +
Sbjct: 370 ESLYLRSTNLSGVGLSSLKNLSMLQYLDMG-YSKMNDQGLIAVAELGS-LDSLGLFATPI 427
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
TD GL+HL +NL+ LD ISD GL HL L+ G+K
Sbjct: 428 TDQGLVHLSGLTNLKKLDLQET-SISDAGLVHLSHLA----------------GLKV--- 467
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
LDLE GL++L+GL +LE L + ++D+ +K L GLT L+ LQ
Sbjct: 468 ------LDLEGTRITDAGLIHLQGLNELEQLELD-KTAVSDAGLKHLKGLTKLQFLQYEE 520
Query: 190 SKVTDSGIAYLK 201
+++T++GI L+
Sbjct: 521 TQITEAGINDLR 532
>gi|168698161|ref|ZP_02730438.1| hypothetical protein GobsU_01477 [Gemmata obscuriglobus UQM 2246]
Length = 417
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 130/376 (34%), Positives = 198/376 (52%), Gaps = 28/376 (7%)
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
G+K AGL L L+L G+ L G L +LN+ + +TD +K L+G
Sbjct: 64 AGVKELAGLKALTTLNLGATKVTDVGVKELAGFKALTTLNLSFTT-LTDVGVKELAGFKA 122
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-L 240
L +L+++ + VTD+G+ L GL+ LT L L G VT A + L++L L L L + +
Sbjct: 123 LTTLELNYTDVTDAGVKELAGLKALTTLGLGGTKVTDAGVKELASLKELSVLGLFAAKAV 182
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
+D G ++ + + +L L LG ++TD + L GL L +L+L G+ D G+ L GL
Sbjct: 183 TDAGVKELAGLKALTTLELGLTKVTDAGVKELAGLKALTTLDLHYTGVTDAGVKELAGLK 242
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
L L+L +T V +G++ L+GL L ++NL ++D +++LAGL +L +LNL ++
Sbjct: 243 ALSVLDLGNTGVTDAGVKELAGLKALTTLNLGGAKVTDAGVKELAGLKALSTLNLGGTKV 302
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
TDTGL L LT LDL +TD+G L L L++ G LTDAGVK + L+
Sbjct: 303 TDTGLKELAGFKALTTLDLSFTTLTDAGVKELAGLTALTLLDLSGTTLTDAGVKELAPLT 362
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
+LT+L L + + +T AGL+ L LKNL +L L + K
Sbjct: 363 NLTMLYLGE-------------------------TGVTDAGLKELAGLKNLTALFLFNTK 397
Query: 481 VTANDIKRLQSRDLPN 496
VT +K L + LP
Sbjct: 398 VTDAGVKELTAA-LPK 412
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 119/338 (35%), Positives = 188/338 (55%), Gaps = 4/338 (1%)
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+ ++D+ +K L+GL L +L + +KVTD G+ L G + LT LNL +T +
Sbjct: 57 YACPLSDAGVKELAGLKALTTLNLGATKVTDVGVKELAGFKALTTLNLSFTTLTDVGVKE 116
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L+ +L L LN ++D G ++ + + +L L LG ++TD + L L L L L
Sbjct: 117 LAGFKALTTLELNYTDVTDAGVKELAGLKALTTLGLGGTKVTDAGVKELASLKELSVLGL 176
Query: 284 DSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
+ + D G+ L GL L LEL T+V +G++ L+GL L +++L +TG++D ++
Sbjct: 177 FAAKAVTDAGVKELAGLKALTTLELGLTKVTDAGVKELAGLKALTTLDLHYTGVTDAGVK 236
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
+LAGL +L L+L +TD G+ L L LT L+L GA++TD+G L K L +L
Sbjct: 237 ELAGLKALSVLDLGNTGVTDAGVKELAGLKALTTLNLGGAKVTDAGVKELAGLKALSTLN 296
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G +TD G+K + +LT L+LS LTD ++ ++GLT L L++S + +T AG+
Sbjct: 297 LGGTKVTDTGLKELAGFKALTTLDLSFT-TLTDAGVKELAGLTALTLLDLSGTTLTDAGV 355
Query: 463 RHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 500
+ L PL NL L L VT +K L L NL +
Sbjct: 356 KELAPLTNLTMLYLGETGVTDAGLKELAG--LKNLTAL 391
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 122/349 (34%), Positives = 192/349 (55%), Gaps = 4/349 (1%)
Query: 88 FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
F + +SD G++ L GL LT+L+ +T G+K AG L L+L T G
Sbjct: 55 FLYACPLSDAGVKELAGLKALTTLNLGATK-VTDVGVKELAGFKALTTLNLSFTTLTDVG 113
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
+ L G L +L + + + +TD+ +K L+GL L +L + +KVTD+G+ L L++L+
Sbjct: 114 VKELAGFKALTTLELNYTD-VTDAGVKELAGLKALTTLGLGGTKVTDAGVKELASLKELS 172
Query: 208 LLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+L L VT A + L+ L +L L L +++D G ++ + + +L L+L + +TD
Sbjct: 173 VLGLFAAKAVTDAGVKELAGLKALTTLELGLTKVTDAGVKELAGLKALTTLDLHYTGVTD 232
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
+ L GL L L+L + G+ D G+ L GL L L L +V +G++ L+GL L
Sbjct: 233 AGVKELAGLKALSVLDLGNTGVTDAGVKELAGLKALTTLNLGGAKVTDAGVKELAGLKAL 292
Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
++NL T ++D L++LAG +L +L+L +TD G+ L LT LT LDL G +TD
Sbjct: 293 STLNLGGTKVTDTGLKELAGFKALTTLDLSFTTLTDAGVKELAGLTALTLLDLSGTTLTD 352
Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
+G L NL L + G+TDAG+K + L +LT L L N +TD
Sbjct: 353 AGVKELAPLTNLTMLYLGETGVTDAGLKELAGLKNLTALFLF-NTKVTD 400
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 115/331 (34%), Positives = 182/331 (54%), Gaps = 2/331 (0%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L +++L + VTD G+ L L +L+ +F ++D G++ L G LT+L +
Sbjct: 74 ALTTLNLGATKVTDVGVKELAGFKALTTLNLSFT-TLTDVGVKELAGFKALTTLELNYTD 132
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+T G+K AGL L L L G+ L L +L L + +TD+ +K L+
Sbjct: 133 -VTDAGVKELAGLKALTTLGLGGTKVTDAGVKELASLKELSVLGLFAAKAVTDAGVKELA 191
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
GL L +L++ +KVTD+G+ L GL+ LT L+L VT A + L+ L +L L+L
Sbjct: 192 GLKALTTLELGLTKVTDAGVKELAGLKALTTLDLHYTGVTDAGVKELAGLKALSVLDLGN 251
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
++D G ++ + + +L LNLG ++TD + L GL L +LNL + D GL L
Sbjct: 252 TGVTDAGVKELAGLKALTTLNLGGAKVTDAGVKELAGLKALSTLNLGGTKVTDTGLKELA 311
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
G L L+LS T + +G++ L+GLT L ++LS T ++D +++LA L++L L L
Sbjct: 312 GFKALTTLDLSFTTLTDAGVKELAGLTALTLLDLSGTTLTDAGVKELAPLTNLTMLYLGE 371
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSG 388
+TD GL L L LT L LF ++TD+G
Sbjct: 372 TGVTDAGLKELAGLKNLTALFLFNTKVTDAG 402
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 124/363 (34%), Positives = 195/363 (53%), Gaps = 4/363 (1%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
G ++SV L ++D+G+ L L +L+ +++D G++ L G LT+L+
Sbjct: 47 SGKPVVSVFLYACPLSDAGVKELAGLKALTTLNLG-ATKVTDVGVKELAGFKALTTLNLS 105
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+T G+K AG L L+L G+ L GL L +L + +TD+ +K
Sbjct: 106 FTT-LTDVGVKELAGFKALTTLELNYTDVTDAGVKELAGLKALTTLGLGGTK-VTDAGVK 163
Query: 175 PLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
L+ L L L + +K VTD+G+ L GL+ LT L L VT A + L+ L +L L
Sbjct: 164 ELASLKELSVLGLFAAKAVTDAGVKELAGLKALTTLELGLTKVTDAGVKELAGLKALTTL 223
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+L+ ++D G ++ + + +L VL+LG +TD + L GL L +LNL + D G+
Sbjct: 224 DLHYTGVTDAGVKELAGLKALSVLDLGNTGVTDAGVKELAGLKALTTLNLGGAKVTDAGV 283
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L L L T+V +GL+ L+G L +++LSFT ++D +++LAGL++L L
Sbjct: 284 KELAGLKALSTLNLGGTKVTDTGLKELAGFKALTTLDLSFTTLTDAGVKELAGLTALTLL 343
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
+L +TD G+ L LT LT L L +TD+G L KNL +L + +TDAGV
Sbjct: 344 DLSGTTLTDAGVKELAPLTNLTMLYLGETGVTDAGLKELAGLKNLTALFLFNTKVTDAGV 403
Query: 414 KHI 416
K +
Sbjct: 404 KEL 406
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 146/257 (56%), Gaps = 2/257 (0%)
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
L C LSD G ++ + + +L LNLG ++TD + L G L +LNL + D G+
Sbjct: 56 LYACPLSDAGVKELAGLKALTTLNLGATKVTDVGVKELAGFKALTTLNLSFTTLTDVGVK 115
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
L G L LEL+ T V +G++ L+GL L ++ L T ++D +++LA L L L
Sbjct: 116 ELAGFKALTTLELNYTDVTDAGVKELAGLKALTTLGLGGTKVTDAGVKELASLKELSVLG 175
Query: 355 L-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
L A+ +TD G+ L L LT L+L ++TD+G L K L +L++ G+TDAGV
Sbjct: 176 LFAAKAVTDAGVKELAGLKALTTLELGLTKVTDAGVKELAGLKALTTLDLHYTGVTDAGV 235
Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 473
K + L +L++L+L N +TD ++ ++GL L +LN+ +++T AG++ L LK L +
Sbjct: 236 KELAGLKALSVLDLG-NTGVTDAGVKELAGLKALTTLNLGGAKVTDAGVKELAGLKALST 294
Query: 474 LTLESCKVTANDIKRLQ 490
L L KVT +K L
Sbjct: 295 LNLGGTKVTDTGLKELA 311
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 107/314 (34%), Positives = 175/314 (55%), Gaps = 4/314 (1%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L +++LS + +TD G+ L L +L+ N+ ++D G++ L GL LT+L
Sbjct: 98 ALTTLNLSFTTLTDVGVKELAGFKALTTLELNYT-DVTDAGVKELAGLKALTTLGLG-GT 155
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T G+K A L L L L + G+ L GL L +L + +TD+ +K L
Sbjct: 156 KVTDAGVKELASLKELSVLGLFAAKAVTDAGVKELAGLKALTTLELGLTK-VTDAGVKEL 214
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+GL L +L + + VTD+G+ L GL+ L++L+L VT A + L+ L +L LNL
Sbjct: 215 AGLKALTTLDLHYTGVTDAGVKELAGLKALSVLDLGNTGVTDAGVKELAGLKALTTLNLG 274
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+++D G ++ + + +L LNLG ++TD L L G L +L+L + D G+ L
Sbjct: 275 GAKVTDAGVKELAGLKALSTLNLGGTKVTDTGLKELAGFKALTTLDLSFTTLTDAGVKEL 334
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
GL L L+LS T + +G++ L+ LTNL + L TG++D L++LAGL +L +L L
Sbjct: 335 AGLTALTLLDLSGTTLTDAGVKELAPLTNLTMLYLGETGVTDAGLKELAGLKNLTALFLF 394
Query: 357 ARQITDTGLAALTS 370
++TD G+ LT+
Sbjct: 395 NTKVTDAGVKELTA 408
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
Query: 379 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 438
L+ ++D+G L K L +L + +TD GVK + +LT LNLS LTD +
Sbjct: 56 LYACPLSDAGVKELAGLKALTTLNLGATKVTDVGVKELAGFKALTTLNLSFT-TLTDVGV 114
Query: 439 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 491
+ ++G L +L ++ + +T AG++ L LK L +L L KVT +K L S
Sbjct: 115 KELAGFKALTTLELNYTDVTDAGVKELAGLKALTTLGLGGTKVTDAGVKELAS 167
>gi|149176715|ref|ZP_01855326.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148844356|gb|EDL58708.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 1266
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 145/469 (30%), Positives = 226/469 (48%), Gaps = 48/469 (10%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
P ++DK + + S L S+ L+ + V+D GL L + L SL I+D L H
Sbjct: 272 PHIDDKSLACLKGL-SGLKSLTLNQTSVSDQGLQILNELKGLTSLTI-MQSPITDAALPH 329
Query: 102 LRGLSNLTSLSFRR-----------------------NNAITAQGMKAFAGLINLVKLDL 138
L GLS LTSL+ R + +T+ GM + K++
Sbjct: 330 LTGLSRLTSLNLARTAVTDAGMEHIIKLKQLKKLNLISTGVTSAGMARVHAALPKCKIET 389
Query: 139 ERCT--------------------RIHGGLVNLKGLMKLESL-NIKWC-NCITDSDMKPL 176
+ T I V G + E +I++ N I D+ +K L
Sbjct: 390 GKATAPGDSTQAQAAIAALKAQGAHIQNQRVFKNGKLTSEYFTSIRFFGNQIVDAQVKHL 449
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LKS+ + +TD +L GL +L L L G +T L +L+ L SL L+L+
Sbjct: 450 KHVPRLKSVSFISTSITDDCTRHLSGLSELETLQLPGTAITDKGLATLNDLKSLENLDLS 509
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
R ++D G K LK LNLG +TD L HLK L LESL L + + GL L
Sbjct: 510 RSGITDAGLVSLKKFPQLKTLNLGSTRVTDAGLTHLKALPKLESLKLYNTSVTGTGLSEL 569
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
L LK L+LS T + +GL+ +S L +L+S++L+ T I+ ++ L L+ L +L LD
Sbjct: 570 VTLPKLKTLDLSLTPLTETGLQTVSKLIHLQSLSLTKTKINSAGVKHLVPLTELTTLKLD 629
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
QI DT LA++ LT L L+L ITD+G +L N K L+ L + +++AG+K +
Sbjct: 630 YTQIDDTALASIAKLTKLRSLNLRKTEITDTGMVHLENLKPLKVLSLDETRVSNAGLKSL 689
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
+ L L L L + ++ D L+ +S + L SL++ +++T G+ +
Sbjct: 690 QSLQQLYRLGLRE-TDIDDAGLKTLSSIFNLKSLDLYGTKVTDTGMAYF 737
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 157/583 (26%), Positives = 250/583 (42%), Gaps = 121/583 (20%)
Query: 28 FRDCALQDLC---LGQYPGVNDKWMDVIASQGSSLLSVD---------LSGSDVTDSGLI 75
F++C L+D L Q+P + ++ + L+ + L + ++DSGL
Sbjct: 111 FQNCPLEDDAFQHLKQFPALTHLFVRHVPLTDQCLVHLKDLTQLEVLWLFATQISDSGLE 170
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA-------------- 121
HL + L SL+ + +IS+ GL HL L L L +A
Sbjct: 171 HLNNLKELNSLNL-YQTKISNAGLTHLSELKKLKQLEVNETKVTSAGVAELQEAIPECKI 229
Query: 122 --------------QGMKAFAGLINLVKLDLERC------TRIH---GGLVNLKGLMKLE 158
+ +K+ G + LD R +R H L LKGL L+
Sbjct: 230 LFDRPVLPAHLKVARQVKSLGGFVRYQDLDQHRLLSSISLSRPHIDDKSLACLKGLSGLK 289
Query: 159 SLNIKWCNC-----------------------ITDSDMKPLSGLTNLKSLQISCSKVTDS 195
SL + + ITD+ + L+GL+ L SL ++ + VTD+
Sbjct: 290 SLTLNQTSVSDQGLQILNELKGLTSLTIMQSPITDAALPHLTGLSRLTSLNLARTAVTDA 349
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSA----------------------------- 226
G+ ++ L++L LNL VT+A + + A
Sbjct: 350 GMEHIIKLKQLKKLNLISTGVTSAGMARVHAALPKCKIETGKATAPGDSTQAQAAIAALK 409
Query: 227 ----------------LGSLFYLNLNRC--QLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L S ++ ++ Q+ D + + LK ++ ITD+C
Sbjct: 410 AQGAHIQNQRVFKNGKLTSEYFTSIRFFGNQIVDAQVKHLKHVPRLKSVSFISTSITDDC 469
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
HL GL+ LE+L L I D+GL L L +L+ L+LS + + +GL L L++
Sbjct: 470 TRHLSGLSELETLQLPGTAITDKGLATLNDLKSLENLDLSRSGITDAGLVSLKKFPQLKT 529
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
+NL T ++D L L L L+SL L +T TGL+ L +L L LDL +T++G
Sbjct: 530 LNLGSTRVTDAGLTHLKALPKLESLKLYNTSVTGTGLSELVTLPKLKTLDLSLTPLTETG 589
Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
+ +L+SL + + AGVKH+ L+ LT L L + D L I+ LT L
Sbjct: 590 LQTVSKLIHLQSLSLTKTKINSAGVKHLVPLTELTTLKLDY-TQIDDTALASIAKLTKLR 648
Query: 449 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 491
SLN+ + IT G+ HL+ LK L+ L+L+ +V+ +K LQS
Sbjct: 649 SLNLRKTEITDTGMVHLENLKPLKVLSLDETRVSNAGLKSLQS 691
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 108/329 (32%), Positives = 165/329 (50%), Gaps = 26/329 (7%)
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
F QI D ++HL+ + L S+SF + +IT + CTR
Sbjct: 437 FGNQIVDAQVKHLKHVPRLKSVSFI-STSIT------------------DDCTR------ 471
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
+L GL +LE+L + ITD + L+ L +L++L +S S +TD+G+ LK +L L
Sbjct: 472 HLSGLSELETLQLPGT-AITDKGLATLNDLKSLENLDLSRSGITDAGLVSLKKFPQLKTL 530
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
NL VT A L L AL L L L ++ G + + LK L+L +T+ L
Sbjct: 531 NLGSTRVTDAGLTHLKALPKLESLKLYNTSVTGTGLSELVTLPKLKTLDLSLTPLTETGL 590
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
+ L +L+SL+L I G+ +L L L L+L TQ+ + L ++ LT L S+
Sbjct: 591 QTVSKLIHLQSLSLTKTKINSAGVKHLVPLTELTTLKLDYTQIDDTALASIAKLTKLRSL 650
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
NL T I+D + L L LK L+LD ++++ GL +L SL L L L I D+G
Sbjct: 651 NLRKTEITDTGMVHLENLKPLKVLSLDETRVSNAGLKSLQSLQQLYRLGLRETDIDDAGL 710
Query: 390 AYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
L + NL+SL++ G +TD G+ + D
Sbjct: 711 KTLSSIFNLKSLDLYGTKVTDTGMAYFHD 739
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 153/583 (26%), Positives = 241/583 (41%), Gaps = 129/583 (22%)
Query: 41 YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC--------- 91
Y ++D + IA + + L S++L +++TD+G++HL++ L+ L +
Sbjct: 630 YTQIDDTALASIA-KLTKLRSLNLRKTEITDTGMVHLENLKPLKVLSLDETRVSNAGLKS 688
Query: 92 --------------IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKL 136
I D GL+ L + NL SL +T GM F LI L
Sbjct: 689 LQSLQQLYRLGLRETDIDDAGLKTLSSIFNLKSLDLY-GTKVTDTGMAYFHDKLIKPTDL 747
Query: 137 DLERCTRIHGGLVNLKG--------------------LMKL----------------ESL 160
+L G+ LK L KL E L
Sbjct: 748 NLHGTGVTEAGVAMLKQQCPNCRIQASPPLDSGIQSILAKLKKSGGFYTRRRLPENAEQL 807
Query: 161 NIKWCN--------CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+++ D + L+GL L L ++ + +TD+G+ +LK + +L +L L
Sbjct: 808 VVRFYPLPGREKKLSPLDERLSLLNGLKTLYELDVAGADLTDAGLKHLKHVPELRVLKLN 867
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
G T L L+ L L L + +++D + ++ LK+ L N+IT+ L HL
Sbjct: 868 GGNFTEEGLKQLTQLKKLEVLQIENAGITNDQLIQLKEMTQLKIFILPQNQITEHGLKHL 927
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
GLTNL+ LNL I +G+V+L L NL+ L L T+V GL L L L ++ L
Sbjct: 928 SGLTNLKVLNLSQNRIYSDGMVHLASLENLRSLALEHTRVADQGLEDLLRLPRLNTLILD 987
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
T I+DG L ++SL L+L++ ITD GL L +L GL LDL ++++ G +
Sbjct: 988 GTTITDGGTPLLRKMTSLGMLSLNSTYITDRGLKDLETLRGLYRLDLNDTKVSEDG---V 1044
Query: 393 RNFKNLR-------------SLEICGGGLTDAG--------------------------- 412
+NF+ + SL+ L +AG
Sbjct: 1045 KNFQRSQPKCNIEYAAPLASSLQYVIQELKEAGANVNVINQGHHYVIESVEFPNHLQGIF 1104
Query: 413 ---------------VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
+K I ++ L L++ + LE I LT L L++S SRI
Sbjct: 1105 AIHNRAEKAKVFDSCLKRISEMKDLKRLSMHW-AEFDNTKLEYIKNLTYLSELDLSGSRI 1163
Query: 458 TSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 500
G++ LK L NL+ L LE ++T + +L L L S
Sbjct: 1164 PDQGIKDLKGLVNLQKLKLEHTQITDAGVAQLAQLQLNRLYSL 1206
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 138/485 (28%), Positives = 220/485 (45%), Gaps = 73/485 (15%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
++ SGL L + +LQ+L+F C + D +HL+ LT L F R+ +T Q +
Sbjct: 92 ISGSGLQSLTNLKHLQNLEFQNC-PLEDDAFQHLKQFPALTHL-FVRHVPLTDQCLVHLK 149
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L L L L GL +L L +L SLN+ + I+++ + LS L LK L+++
Sbjct: 150 DLTQLEVLWLFATQISDSGLEHLNNLKELNSLNL-YQTKISNAGLTHLSELKKLKQLEVN 208
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS--LSALGSLFYLNLNRCQLSDDGCE 246
+KVT +G+A L+ E P D L A +L + R S G
Sbjct: 209 ETKVTSAGVAELQ----------EAIPECKILFDRPVLPA-----HLKVARQVKSLGGFV 253
Query: 247 KFSKIGSLKVL---NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
++ + ++L +L I D+ L LKGL+ L+SL L+ + D+GL L L L
Sbjct: 254 RYQDLDQHRLLSSISLSRPHIDDKSLACLKGLSGLKSLTLNQTSVSDQGLQILNELKGLT 313
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
L + + + + L HL+GL+ L S+NL+ T ++D + + L LK LNL + +T
Sbjct: 314 SLTIMQSPITDAALPHLTGLSRLTSLNLARTAVTDAGMEHIIKLKQLKKLNLISTGVTSA 373
Query: 364 GLAALTSL-------TG----------------------------------------LTH 376
G+A + + TG T
Sbjct: 374 GMARVHAALPKCKIETGKATAPGDSTQAQAAIAALKAQGAHIQNQRVFKNGKLTSEYFTS 433
Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436
+ FG +I D+ +L++ L+S+ +TD +H+ LS L L L +TDK
Sbjct: 434 IRFFGNQIVDAQVKHLKHVPRLKSVSFISTSITDDCTRHLSGLSELETLQLPGTA-ITDK 492
Query: 437 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 496
L ++ L L +L++S S IT AGL LK L++L L S +VT + L++ LP
Sbjct: 493 GLATLNDLKSLENLDLSRSGITDAGLVSLKKFPQLKTLNLGSTRVTDAGLTHLKA--LPK 550
Query: 497 LVSFR 501
L S +
Sbjct: 551 LESLK 555
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 112/413 (27%), Positives = 191/413 (46%), Gaps = 55/413 (13%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFN------------------FCIQISDGGL 99
+L +D++G+D+TD+GL HLK L+ L N +QI + G+
Sbjct: 836 TLYELDVAGADLTDAGLKHLKHVPELRVLKLNGGNFTEEGLKQLTQLKKLEVLQIENAGI 895
Query: 100 --EHLRGLSNLTSLSFR--RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
+ L L +T L N IT G+K +GL NL L+L + G+V+L L
Sbjct: 896 TNDQLIQLKEMTQLKIFILPQNQITEHGLKHLSGLTNLKVLNLSQNRIYSDGMVHLASLE 955
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L SL ++ + D ++ L L L +L + + +TD G L+ + L +L+L
Sbjct: 956 NLRSLALEHTR-VADQGLEDLLRLPRLNTLILDGTTITDGGTPLLRKMTSLGMLSLNSTY 1014
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK--------------------IGSLK 255
+T L L L L+ L+LN ++S+DG + F + I LK
Sbjct: 1015 ITDRGLKDLETLRGLYRLDLNDTKVSEDGVKNFQRSQPKCNIEYAAPLASSLQYVIQELK 1074
Query: 256 -------VLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
V+N G + + + E HL+G+ + + + + D L ++ + +LK L
Sbjct: 1075 EAGANVNVINQGHHYVIESVEFPNHLQGIFAIHN-RAEKAKVFDSCLKRISEMKDLKRLS 1133
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
+ + ++ L ++ LT L ++LS + I D ++ L GL +L+ L L+ QITD G+A
Sbjct: 1134 MHWAEFDNTKLEYIKNLTYLSELDLSGSRIPDQGIKDLKGLVNLQKLKLEHTQITDAGVA 1193
Query: 367 ALTSLT--GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
L L L LDL ++ T + L++ + LR L + L+ A ++ K
Sbjct: 1194 QLAQLQLNRLYSLDLDHSKTTAACLESLKDMQRLRFLSLQHLELSAADLEKFK 1246
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 133/288 (46%), Gaps = 38/288 (13%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N ITD+ +K ++ L +++ L K++ SG+ L L+ L L + CP+ L
Sbjct: 66 NKITDTQIKFINHLKDIRKLGFYNVKISGSGLQSLTNLKHLQNLEFQNCPLEDDAFQHLK 125
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
+L +L + L+D + L+VL L +I+D L HL L L SLNL
Sbjct: 126 QFPALTHLFVRHVPLTDQCLVHLKDLTQLEVLWLFATQISDSGLEHLNNLKELNSLNLYQ 185
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSG----------------------------- 316
I + GL +L+ L LK LE+++T+V S+G
Sbjct: 186 TKISNAGLTHLSELKKLKQLEVNETKVTSAGVAELQEAIPECKILFDRPVLPAHLKVARQ 245
Query: 317 LRHLSGLTN---------LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
++ L G L SI+LS I D SL L GLS LKSL L+ ++D GL
Sbjct: 246 VKSLGGFVRYQDLDQHRLLSSISLSRPHIDDKSLACLKGLSGLKSLTLNQTSVSDQGLQI 305
Query: 368 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
L L GLT L + + ITD+ +L L SL + +TDAG++H
Sbjct: 306 LNELKGLTSLTIMQSPITDAALPHLTGLSRLTSLNLARTAVTDAGMEH 353
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 102/341 (29%), Positives = 156/341 (45%), Gaps = 41/341 (12%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+ S+ + +K+TD+ I ++ L+ + L ++ + L SL+ L L L C L
Sbjct: 57 KIDSVSFTNNKITDTQIKFINHLKDIRKLGFYNVKISGSGLQSLTNLKHLQNLEFQNCPL 116
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
DD + + +L L + +TD+CLVHLK LT LE L L + I D GL +L L
Sbjct: 117 EDDAFQHLKQFPALTHLFVRHVPLTDQCLVHLKDLTQLEVLWLFATQISDSGLEHLNNLK 176
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG--------------------- 339
L L L T++ ++GL HLS L L+ + ++ T ++
Sbjct: 177 ELNSLNLYQTKISNAGLTHLSELKKLKQLEVNETKVTSAGVAELQEAIPECKILFDRPVL 236
Query: 340 --------SLRKLAGLSS---------LKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
++ L G L S++L I D LA L L+GL L L
Sbjct: 237 PAHLKVARQVKSLGGFVRYQDLDQHRLLSSISLSRPHIDDKSLACLKGLSGLKSLTLNQT 296
Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
++D G L K L SL I +TDA + H+ LS LT LNL++ +TD +E I
Sbjct: 297 SVSDQGLQILNELKGLTSLTIMQSPITDAALPHLTGLSRLTSLNLARTA-VTDAGMEHII 355
Query: 443 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 483
L L LN+ ++ +TSAG+ + L +E+ K TA
Sbjct: 356 KLKQLKKLNLISTGVTSAGMARVH--AALPKCKIETGKATA 394
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 146/327 (44%), Gaps = 53/327 (16%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-----------------------IQ 93
++L ++LS + + G++HL NL+SL
Sbjct: 931 TNLKVLNLSQNRIYSDGMVHLASLENLRSLALEHTRVADQGLEDLLRLPRLNTLILDGTT 990
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I+DGG LR +++L LS + IT +G+K L L +LDL G+ N +
Sbjct: 991 ITDGGTPLLRKMTSLGMLSL-NSTYITDRGLKDLETLRGLYRLDLNDTKVSEDGVKNFQ- 1048
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
NI++ PL+ SLQ ++ ++G + ++N +G
Sbjct: 1049 -RSQPKCNIEYA--------APLAS-----SLQYVIQELKEAGA-------NVNVIN-QG 1086
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSD--DGC-EKFSKIGSLKVLNLGFNEITDECLV 270
++ + L +F ++ NR + + D C ++ S++ LK L++ + E + L
Sbjct: 1087 HHYVIESVEFPNHLQGIFAIH-NRAEKAKVFDSCLKRISEMKDLKRLSMHWAEFDNTKLE 1145
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT--NLES 328
++K LT L L+L I D+G+ +L GL NL+ L+L TQ+ +G+ L+ L L S
Sbjct: 1146 YIKNLTYLSELDLSGSRIPDQGIKDLKGLVNLQKLKLEHTQITDAGVAQLAQLQLNRLYS 1205
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNL 355
++L + + L L + L+ L+L
Sbjct: 1206 LDLDHSKTTAACLESLKDMQRLRFLSL 1232
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 3/129 (2%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+K + + +L +L + + L +K L L L++ I D +K L GL NL+
Sbjct: 1120 LKRISEMKDLKRLSMHWAEFDNTKLEYIKNLTYLSELDLSGSR-IPDQGIKDLKGLVNLQ 1178
Query: 184 SLQISCSKVTDSGIAYLKGLQ--KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L++ +++TD+G+A L LQ +L L+L+ TAACL+SL + L +L+L +LS
Sbjct: 1179 KLKLEHTQITDAGVAQLAQLQLNRLYSLDLDHSKTTAACLESLKDMQRLRFLSLQHLELS 1238
Query: 242 DDGCEKFSK 250
EKF +
Sbjct: 1239 AADLEKFKQ 1247
>gi|283780172|ref|YP_003370927.1| hypothetical protein Psta_2397 [Pirellula staleyi DSM 6068]
gi|283438625|gb|ADB17067.1| leucine-rich repeat cysteine-containing subtype [Pirellula staleyi
DSM 6068]
Length = 443
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 120/351 (34%), Positives = 192/351 (54%), Gaps = 27/351 (7%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
VTD+GL +L L+ L ++D G+EHL L L + +R + +T++G ++ A
Sbjct: 107 VTDAGLANLDGHPTLRILVLELS-SVTDAGMEHLTKLPALEDIQLKRCD-LTSKGYESLA 164
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
+ L ++ + L +K + +LE L+++ CN +T++ + PL+G+T LKSL+I
Sbjct: 165 KIKTLRRIRAPQTNFNDDCLAAIKDMSQLELLDLQDCNQVTEAGLAPLAGMTKLKSLRIY 224
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+TD+ + Y+K + L L+LE +A +D + +G L
Sbjct: 225 GPTITDTVMGYIKDCKNLASLSLEQ---SAVGVDGMKVIGGL------------------ 263
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
SK+ LK+ G + +TD+ L + GL +LE L L S +G+V+L G+ LK L+LS
Sbjct: 264 SKLKELKLY--GASNVTDDALAQIAGLKDLEILELRSTTTTSKGMVHLAGMSKLKLLDLS 321
Query: 309 DT-QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
+T + ++GL L+ LTNLE INL +T + D L LAG++ LK LNLD Q+TD GL
Sbjct: 322 ETANIDNAGLAALAPLTNLEEINLWYTFVDDAGLAPLAGMTKLKRLNLDKCQVTDAGLVH 381
Query: 368 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIK 417
L L+ L L + R+TD+G A L KNL+ L I ++D GV ++
Sbjct: 382 LKGLSNLEFLHIGSTRVTDTGLAELEGLKNLKHLVITFCNDISDDGVAKLQ 432
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 111/361 (30%), Positives = 182/361 (50%), Gaps = 30/361 (8%)
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
+D ++K L GL +L L+ + VTD+G+A L G L +L LE VT A ++ L+ L
Sbjct: 84 SDENLKHLKGLPSLTRLEANVRGVTDAGLANLDGHPTLRILVLELSSVTDAGMEHLTKLP 143
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG- 287
+L + L RC L+ G E +KI +L+ + D+CL +K ++ LE L+L C
Sbjct: 144 ALEDIQLKRCDLTSKGYESLAKIKTLRRIRAPQTNFNDDCLAAIKDMSQLELLDLQDCNQ 203
Query: 288 IGDEGLVNLTGLCNLKCLE------------------------LSDTQVGSSGLRHLSGL 323
+ + GL L G+ LK L L + VG G++ + GL
Sbjct: 204 VTEAGLAPLAGMTKLKSLRIYGPTITDTVMGYIKDCKNLASLSLEQSAVGVDGMKVIGGL 263
Query: 324 TNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF-G 381
+ L+ + L + ++D +L ++AGL L+ L L + T G+ L ++ L LDL
Sbjct: 264 SKLKELKLYGASNVTDDALAQIAGLKDLEILELRSTTTTSKGMVHLAGMSKLKLLDLSET 323
Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
A I ++G A L NL + + + DAG+ + ++ L LNL + C +TD L +
Sbjct: 324 ANIDNAGLAALAPLTNLEEINLWYTFVDDAGLAPLAGMTKLKRLNLDK-CQVTDAGLVHL 382
Query: 442 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND-IKRLQSRDLPNLVSF 500
GL+ L L++ ++R+T GL L+ LKNL+ L + C ++D + +LQ+ LP L
Sbjct: 383 KGLSNLEFLHIGSTRVTDTGLAELEGLKNLKHLVITFCNDISDDGVAKLQAA-LPGLTKI 441
Query: 501 R 501
Sbjct: 442 E 442
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 125/258 (48%), Gaps = 29/258 (11%)
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
G++ + LG E +DE L HLKGL +L L + G+ D GL NL G L+ L L +
Sbjct: 72 GNITEVKLGV-EGSDENLKHLKGLPSLTRLEANVRGVTDAGLANLDGHPTLRILVLELSS 130
Query: 312 VGSSGLRHLSGLTNLESINLSF------------------------TGISDGSLRKLAGL 347
V +G+ HL+ L LE I L T +D L + +
Sbjct: 131 VTDAGMEHLTKLPALEDIQLKRCDLTSKGYESLAKIKTLRRIRAPQTNFNDDCLAAIKDM 190
Query: 348 SSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
S L+ L+L D Q+T+ GLA L +T L L ++G ITD+ Y+++ KNL SL +
Sbjct: 191 SQLELLDLQDCNQVTEAGLAPLAGMTKLKSLRIYGPTITDTVMGYIKDCKNLASLSLEQS 250
Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 466
+ G+K I LS L L L N+TD L I+GL L L + ++ TS G+ HL
Sbjct: 251 AVGVDGMKVIGGLSKLKELKLYGASNVTDDALAQIAGLKDLEILELRSTTTTSKGMVHLA 310
Query: 467 PLKNLRSLTLESCKVTAN 484
+ L+ L L TAN
Sbjct: 311 GMSKLKLLDLSE---TAN 325
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 125/228 (54%), Gaps = 6/228 (2%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L S+ + G +TD+ + ++KDC NL SL DG ++ + GLS L L
Sbjct: 216 TKLKSLRIYGPTITDTVMGYIKDCKNLASLSLEQSAVGVDG-MKVIGGLSKLKELKLYGA 274
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ +T + AGL +L L+L T G+V+L G+ KL+ L++ I ++ + L
Sbjct: 275 SNVTDDALAQIAGLKDLEILELRSTTTTSKGMVHLAGMSKLKLLDLSETANIDNAGLAAL 334
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LTNL+ + + + V D+G+A L G+ KL LNL+ C VT A L L L +L +L++
Sbjct: 335 APLTNLEEINLWYTFVDDAGLAPLAGMTKLKRLNLDKCQVTDAGLVHLKGLSNLEFLHIG 394
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLK----GLTNLE 279
+++D G + + +LK L + F N+I+D+ + L+ GLT +E
Sbjct: 395 STRVTDTGLAELEGLKNLKHLVITFCNDISDDGVAKLQAALPGLTKIE 442
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 96/186 (51%), Gaps = 6/186 (3%)
Query: 307 LSDTQVGSSG----LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
+++ ++G G L+HL GL +L + + G++D L L G +L+ L L+ +TD
Sbjct: 74 ITEVKLGVEGSDENLKHLKGLPSLTRLEANVRGVTDAGLANLDGHPTLRILVLELSSVTD 133
Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
G+ LT L L + L +T G L K LR + D + IKD+S L
Sbjct: 134 AGMEHLTKLPALEDIQLKRCDLTSKGYESLAKIKTLRRIRAPQTNFNDDCLAAIKDMSQL 193
Query: 423 TLLNLSQNCN-LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
LL+L Q+CN +T+ L ++G+T L SL + IT + ++K KNL SL+LE V
Sbjct: 194 ELLDL-QDCNQVTEAGLAPLAGMTKLKSLRIYGPTITDTVMGYIKDCKNLASLSLEQSAV 252
Query: 482 TANDIK 487
+ +K
Sbjct: 253 GVDGMK 258
>gi|46447250|ref|YP_008615.1| hypothetical protein pc1616 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400891|emb|CAF24340.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 813
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 155/424 (36%), Positives = 230/424 (54%), Gaps = 18/424 (4%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNF 90
ALQ L L + + D + ++S ++L +DLS S + TD+GL HL +LQ LD +
Sbjct: 379 ALQHLDLSECYLLKDTGLAHLSSL-TALQYLDLSDSGNFTDAGLAHLTPLVSLQHLDLSK 437
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
++ GL HL L L L +T G+ L+ L LDL C + GLV
Sbjct: 438 SENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLVALRHLDLSECKNLTDDGLV 497
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-----CSKVTDSGIAYLKGLQ 204
+L L+ L+ L++K C +TD+ + L+ LT L+ L + C +TD G+A+L L
Sbjct: 498 HLSSLVALQYLSLKLCENLTDAGLAHLTPLTTLEHLDLGLDLGCCHNLTDDGLAHLSSLT 557
Query: 205 KLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFN 262
L L+L +T A L L+ L +L +L+L+ C+ L+D+G + + +L+ L+L +
Sbjct: 558 ALKHLDLSWRENLTDAGLAHLTPLTALRHLDLSWCENLTDEGLAYLTPLVALQYLSLKGS 617
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHL 320
+ITDE L HL L+ L L+L+ C I GL +LT L NL+ L+LS + S L +L
Sbjct: 618 DITDEGLEHLAHLSALRHLSLNDCRRINGYGLAHLTSLVNLEHLDLSGCYHLPSFQLIYL 677
Query: 321 SGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTG--LTH 376
S L NL+ +NLS G+ L L L +L+ L+L +TD GLA LTSL G L H
Sbjct: 678 SSLVNLQHLNLSECFGLCHDGLEDLTPLMNLQYLDLSGCINLTDQGLAYLTSLVGLDLQH 737
Query: 377 LDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
LDL G +ITD+G A+L + L+ L + LTD G+ H+ L +L L L + N+T
Sbjct: 738 LDLSGCKKITDTGLAHLTSLVTLQHLNLSECVNLTDTGLAHLVSLVNLQYLELRECKNIT 797
Query: 435 DKTL 438
D L
Sbjct: 798 DAGL 801
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 150/425 (35%), Positives = 211/425 (49%), Gaps = 40/425 (9%)
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D+GL HL + LQ LD + C + D GL HL L+ L L + T G+ L
Sbjct: 368 DTGLAHLTSLTALQHLDLSECYLLKDTGLAHLSSLTALQYLDLSDSGNFTDAGLAHLTPL 427
Query: 131 INLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
++L LDL + + G GL +L L+ L L + C +TD+ + L+ L L+ L +S
Sbjct: 428 VSLQHLDLSKSENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLVALRHLDLSE 487
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNR----CQ-LSD 242
C +TD G+ +L L L L+L+ C +T A L L+ L +L +L+L C L+D
Sbjct: 488 CKNLTDDGLVHLSSLVALQYLSLKLCENLTDAGLAHLTPLTTLEHLDLGLDLGCCHNLTD 547
Query: 243 DGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC 300
DG S + +LK L+L + E +TD L HL LT L L+L C + DEGL LT L
Sbjct: 548 DGLAHLSSLTALKHLDLSWRENLTDAGLAHLTPLTALRHLDLSWCENLTDEGLAYLTPLV 607
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQ 359
L+ L L + + GL H LA LS+L+ L+L D R+
Sbjct: 608 ALQYLSLKGSDITDEGLEH------------------------LAHLSALRHLSLNDCRR 643
Query: 360 ITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIK 417
I GLA LTSL L HLDL G + YL + NL+ L + GL G++ +
Sbjct: 644 INGYGLAHLTSLVNLEHLDLSGCYHLPSFQLIYLSSLVNLQHLNLSECFGLCHDGLEDLT 703
Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTG--LVSLNVSN-SRITSAGLRHLKPLKNLRSL 474
L +L L+LS NLTD+ L ++ L G L L++S +IT GL HL L L+ L
Sbjct: 704 PLMNLQYLDLSGCINLTDQGLAYLTSLVGLDLQHLDLSGCKKITDTGLAHLTSLVTLQHL 763
Query: 475 TLESC 479
L C
Sbjct: 764 NLSEC 768
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 125/361 (34%), Positives = 190/361 (52%), Gaps = 35/361 (9%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL L+ LD + C ++D GL HL L L LS + +T G+
Sbjct: 465 NLTDAGLAHLTPLVALRHLDLSECKNLTDDGLVHLSSLVALQYLSLKLCENLTDAGLAHL 524
Query: 128 AGLINLVKLDLER----CTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
L L LDL C + GL +L L L+ L++ W +TD+ + L+ LT L
Sbjct: 525 TPLTTLEHLDLGLDLGCCHNLTDDGLAHLSSLTALKHLDLSWRENLTDAGLAHLTPLTAL 584
Query: 183 KSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QL 240
+ L +S C +TD G+AYL L L L+L+G +T L+ L+ L +L +L+LN C ++
Sbjct: 585 RHLDLSWCENLTDEGLAYLTPLVALQYLSLKGSDITDEGLEHLAHLSALRHLSLNDCRRI 644
Query: 241 SDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 298
+ G + + +L+ L+L G + L++L L NL+ LNL C G+ +GL +LT
Sbjct: 645 NGYGLAHLTSLVNLEHLDLSGCYHLPSFQLIYLSSLVNLQHLNLSECFGLCHDGLEDLTP 704
Query: 299 LCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
L NL+ L+LS + GL +L+ L L+ +L +G
Sbjct: 705 LMNLQYLDLSGCINLTDQGLAYLTSLVGLDLQHLDLSG---------------------C 743
Query: 358 RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVK 414
++ITDTGLA LTSL L HL+L +TD+G A+L + NL+ LE+ C +TDAG+
Sbjct: 744 KKITDTGLAHLTSLVTLQHLNLSECVNLTDTGLAHLVSLVNLQYLELREC-KNITDAGLA 802
Query: 415 H 415
H
Sbjct: 803 H 803
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 131/394 (33%), Positives = 194/394 (49%), Gaps = 48/394 (12%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L+ L N L ++ NN I +GL+N + +I N ++E LN
Sbjct: 282 LKELLNFARL-YQLNNLINYLEFTVVSGLLNNTS-HVNEFEKILNHFSN-----EIEGLN 334
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKV----TDSGIAYLKGLQKLTLLNLEGCPVT 217
+ + T++ L N K+L++ C K+ D+G+A+L L L L+L C +
Sbjct: 335 LSGKDFFTEAHFL---ALKNCKNLKVLCLKIFYTPIDTGLAHLTSLTALQHLDLSECYLL 391
Query: 218 AAC-LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
L LS+L +L YL+L SD G TD L HL L
Sbjct: 392 KDTGLAHLSSLTALQYLDL-----SDSG------------------NFTDAGLAHLTPLV 428
Query: 277 NLESLNLD-SCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF- 333
+L+ L+L S + +GL +LT L L+ L LSD + + +GL HL+ L L ++LS
Sbjct: 429 SLQHLDLSKSENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLVALRHLDLSEC 488
Query: 334 TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL---FG--ARITDS 387
++D L L+ L +L+ L+L +TD GLA LT LT L HLDL G +TD
Sbjct: 489 KNLTDDGLVHLSSLVALQYLSLKLCENLTDAGLAHLTPLTTLEHLDLGLDLGCCHNLTDD 548
Query: 388 GAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 446
G A+L + L+ L++ LTDAG+ H+ L++L L+LS NLTD+ L ++ L
Sbjct: 549 GLAHLSSLTALKHLDLSWRENLTDAGLAHLTPLTALRHLDLSWCENLTDEGLAYLTPLVA 608
Query: 447 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
L L++ S IT GL HL L LR L+L C+
Sbjct: 609 LQYLSLKGSDITDEGLEHLAHLSALRHLSLNDCR 642
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 75/127 (59%), Gaps = 3/127 (2%)
Query: 362 DTGLAALTSLTGLTHLDLFGARI-TDSGAAYLRNFKNLRSLEIC-GGGLTDAGVKHIKDL 419
DTGLA LTSLT L HLDL + D+G A+L + L+ L++ G TDAG+ H+ L
Sbjct: 368 DTGLAHLTSLTALQHLDLSECYLLKDTGLAHLSSLTALQYLDLSDSGNFTDAGLAHLTPL 427
Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLES 478
SL L+LS++ NLT L ++ L L L +S+ R +T AGL HL PL LR L L
Sbjct: 428 VSLQHLDLSKSENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLVALRHLDLSE 487
Query: 479 CKVTAND 485
CK +D
Sbjct: 488 CKNLTDD 494
>gi|168701673|ref|ZP_02733950.1| leucine-rich repeat domain protein [Gemmata obscuriglobus UQM 2246]
Length = 367
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 170/298 (57%), Gaps = 2/298 (0%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+TD +K L+GL NL L + + VTD+G+ L GL+ LT L+L VT A + L+AL
Sbjct: 61 VTDKGLKELAGLKNLTHLNLFSTWVTDAGVKELAGLKGLTTLDLNSTSVTDAGMKELAAL 120
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
+L L L+ ++D G ++ + + L L+L ++TD L L L L ++ L++
Sbjct: 121 NNLTTLRLSGKGVTDAGLKELAALKKLANLDLSHTKVTDAGLKELAALKGLTTIRLNNTE 180
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
+ D GL L L L L+LS T+V +GL+ L+ L L + L T ++D L++LAGL
Sbjct: 181 VTDAGLKELAALKKLADLDLSQTKVTDAGLKELAALKGLTCLGLLGTKVTDAGLKELAGL 240
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
+L L+L +TD GL L +L LTHL LFG ++T G L K L +L +
Sbjct: 241 -NLTDLHLAGTPVTDAGLKELAALKNLTHLYLFGTKVTGVGLKELSGLKGLTTLYLNNTK 299
Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
+TDAGVK + L LT L+LS +TD ++ ++GL GL +L + +++T AG++ L
Sbjct: 300 VTDAGVKELSGLKGLTTLDLSY-TEMTDAGVKALAGLKGLTNLELYGTKVTDAGVKEL 356
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 171/300 (57%), Gaps = 3/300 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+++D GL+ L GL NLT L+ + +T G+K AGL L LDL + G+ L
Sbjct: 60 RVTDKGLKELAGLKNLTHLNL-FSTWVTDAGVKELAGLKGLTTLDLNSTSVTDAGMKELA 118
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L L +L + +TD+ +K L+ L L +L +S +KVTD+G+ L L+ LT + L
Sbjct: 119 ALNNLTTLRLSG-KGVTDAGLKELAALKKLANLDLSHTKVTDAGLKELAALKGLTTIRLN 177
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
VT A L L+AL L L+L++ +++D G ++ + + L L L ++TD L L
Sbjct: 178 NTEVTDAGLKELAALKKLADLDLSQTKVTDAGLKELAALKGLTCLGLLGTKVTDAGLKEL 237
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
GL NL L+L + D GL L L NL L L T+V GL+ LSGL L ++ L+
Sbjct: 238 AGL-NLTDLHLAGTPVTDAGLKELAALKNLTHLYLFGTKVTGVGLKELSGLKGLTTLYLN 296
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
T ++D +++L+GL L +L+L ++TD G+ AL L GLT+L+L+G ++TD+G L
Sbjct: 297 NTKVTDAGVKELSGLKGLTTLDLSYTEMTDAGVKALAGLKGLTNLELYGTKVTDAGVKEL 356
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 116/306 (37%), Positives = 169/306 (55%), Gaps = 5/306 (1%)
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
LSF R +T +G+K AGL NL L+L G+ L GL L +L++ +TD
Sbjct: 56 LSFTR---VTDKGLKELAGLKNLTHLNLFSTWVTDAGVKELAGLKGLTTLDLN-STSVTD 111
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ MK L+ L NL +L++S VTD+G+ L L+KL L+L VT A L L+AL L
Sbjct: 112 AGMKELAALNNLTTLRLSGKGVTDAGLKELAALKKLANLDLSHTKVTDAGLKELAALKGL 171
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
+ LN +++D G ++ + + L L+L ++TD L L L L L L + D
Sbjct: 172 TTIRLNNTEVTDAGLKELAALKKLADLDLSQTKVTDAGLKELAALKGLTCLGLLGTKVTD 231
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
GL L GL NL L L+ T V +GL+ L+ L NL + L T ++ L++L+GL L
Sbjct: 232 AGLKELAGL-NLTDLHLAGTPVTDAGLKELAALKNLTHLYLFGTKVTGVGLKELSGLKGL 290
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
+L L+ ++TD G+ L+ L GLT LDL +TD+G L K L +LE+ G +TD
Sbjct: 291 TTLYLNNTKVTDAGVKELSGLKGLTTLDLSYTEMTDAGVKALAGLKGLTNLELYGTKVTD 350
Query: 411 AGVKHI 416
AGVK +
Sbjct: 351 AGVKEL 356
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 170/312 (54%), Gaps = 3/312 (0%)
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
+ +S ++VTD G+ L GL+ LT LNL VT A + L+ L L L+LN ++D G
Sbjct: 54 VYLSFTRVTDKGLKELAGLKNLTHLNLFSTWVTDAGVKELAGLKGLTTLDLNSTSVTDAG 113
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
++ + + +L L L +TD L L L L +L+L + D GL L L L
Sbjct: 114 MKELAALNNLTTLRLSGKGVTDAGLKELAALKKLANLDLSHTKVTDAGLKELAALKGLTT 173
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
+ L++T+V +GL+ L+ L L ++LS T ++D L++LA L L L L ++TD G
Sbjct: 174 IRLNNTEVTDAGLKELAALKKLADLDLSQTKVTDAGLKELAALKGLTCLGLLGTKVTDAG 233
Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424
L L L LT L L G +TD+G L KNL L + G +T G+K + L LT
Sbjct: 234 LKELAGLN-LTDLHLAGTPVTDAGLKELAALKNLTHLYLFGTKVTGVGLKELSGLKGLTT 292
Query: 425 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 484
L L+ N +TD ++ +SGL GL +L++S + +T AG++ L LK L +L L KVT
Sbjct: 293 LYLN-NTKVTDAGVKELSGLKGLTTLDLSYTEMTDAGVKALAGLKGLTNLELYGTKVTDA 351
Query: 485 DIKRLQSRDLPN 496
+K L S LP
Sbjct: 352 GVKELNSA-LPK 362
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 108/330 (32%), Positives = 162/330 (49%), Gaps = 29/330 (8%)
Query: 41 YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
+ V DK + +A +L ++L + VTD+G+ L L +LD N ++D G++
Sbjct: 58 FTRVTDKGLKELAGL-KNLTHLNLFSTWVTDAGVKELAGLKGLTTLDLN-STSVTDAGMK 115
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
L L+NLT+L +T G+K A L L LDL GL L L L ++
Sbjct: 116 ELAALNNLTTLRL-SGKGVTDAGLKELAALKKLANLDLSHTKVTDAGLKELAALKGLTTI 174
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+ +TD+ +K L+ L L L +S +KVTD+G+ L L+ LT L L G VT A
Sbjct: 175 RLNNTE-VTDAGLKELAALKKLADLDLSQTKVTDAGLKELAALKGLTCLGLLGTKVTDAG 233
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
L L+ L L+D L+L +TD L L L NL
Sbjct: 234 LKELAGL-----------NLTD--------------LHLAGTPVTDAGLKELAALKNLTH 268
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
L L + GL L+GL L L L++T+V +G++ LSGL L +++LS+T ++D
Sbjct: 269 LYLFGTKVTGVGLKELSGLKGLTTLYLNNTKVTDAGVKELSGLKGLTTLDLSYTEMTDAG 328
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTS 370
++ LAGL L +L L ++TD G+ L S
Sbjct: 329 VKALAGLKGLTNLELYGTKVTDAGVKELNS 358
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 100/217 (46%), Gaps = 40/217 (18%)
Query: 5 DISQQIFNELVYSRCLTEVSLEAFR--DCALQDL-------CLGQY-PGVNDKWMDVIAS 54
+++ EL + L ++ L + D L++L CLG V D + +A
Sbjct: 180 EVTDAGLKELAALKKLADLDLSQTKVTDAGLKELAALKGLTCLGLLGTKVTDAGLKELA- 238
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
G +L + L+G+ VTD+GL L NL L + F +++ GL+ L GL LT+L +
Sbjct: 239 -GLNLTDLHLAGTPVTDAGLKELAALKNLTHL-YLFGTKVTGVGLKELSGLKGLTTL-YL 295
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N +T G+K +GL L LDL +TD+ +K
Sbjct: 296 NNTKVTDAGVKELSGLKGLTTLDLSYTE-------------------------MTDAGVK 330
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLN 210
L+GL L +L++ +KVTD+G+ L L K +LN
Sbjct: 331 ALAGLKGLTNLELYGTKVTDAGVKELNSALPKCKILN 367
>gi|406835528|ref|ZP_11095122.1| hypothetical protein SpalD1_27934 [Schlesneria paludicola DSM
18645]
Length = 590
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 155/497 (31%), Positives = 237/497 (47%), Gaps = 37/497 (7%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
L+ F D L DL L P + D+ + +A +SL++++LS + +TD GL HLK +NL+
Sbjct: 71 LKPFSD--LSDLDLHAIP-ILDRDLKELADL-TSLVNLNLSDTRITDRGLFHLKRLTNLE 126
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
++ I+D G++ L L L+ + IT +G++ + NL L L+
Sbjct: 127 TVWLQNT-SITDAGIKELASFERLAELNLS-DTRITDRGLRELSDFQNLTTLWLQNVEMT 184
Query: 145 HGGLVNLKGLMKLESLNIKWCNC-----ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
GL LK L + +L++ N ITD ++ LS L L+ L ++ + DSG+
Sbjct: 185 DDGLQALKRLKTITTLDLSNLNGLNTIRITDEGLEQLSDLPELRHLYLANIPIADSGLTS 244
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
L+ L+ LT+L+L G +T L+ L L L L + Q+SD G + +L L +
Sbjct: 245 LRRLKHLTVLDLRGTQITDEGLNELRGLHELETFKLTKTQISDAGLTALKGLKNLTTLLI 304
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG--- 316
G N+IT L L L L++L+L + D L L+ + L L LSDT + G
Sbjct: 305 GSNQITGTGLQELTNLDQLKTLDLSDTQVTDVELNRLSSIRTLTDLRLSDTPITDVGLRS 364
Query: 317 -------------------LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
+ L+ L +L ++L T I+D L L L L SLNLDA
Sbjct: 365 LRELKRLRRLTLGGTQITDISELNHLRDLTHLDLRVTPITDTGLHGLGDLKHLTSLNLDA 424
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
Q+TD L+ L L L L L I+ G L + L L + D G++ I
Sbjct: 425 TQVTDASLSELKCLVHLKELSLSRTAISGLGFKSLERLEQLTVLRCDRCLIADEGLREIC 484
Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 477
L SL L +S +TD L + L GL L + N+ +T AG+ L L LR+L +
Sbjct: 485 TLKSLKTLVIS-GTRVTDDGLAELHQLEGLQELRIENNALTDAGMSELMVLGKLRTLGIS 543
Query: 478 SCKVTA---NDIKRLQS 491
K+T +DIKRL++
Sbjct: 544 HNKITDTSLSDIKRLKN 560
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 136/412 (33%), Positives = 208/412 (50%), Gaps = 17/412 (4%)
Query: 88 FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
F + S+ L L+ S+L+ L I + +K A L +LV L+L G
Sbjct: 57 FEEAHKFSEKHLHLLKPFSDLSDLDLH-AIPILDRDLKELADLTSLVNLNLSDTRITDRG 115
Query: 148 LVNLKGLMKLESLNIKWCN--CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
L +LK L LE++ W ITD+ +K L+ L L +S +++TD G+ L Q
Sbjct: 116 LFHLKRLTNLETV---WLQNTSITDAGIKELASFERLAELNLSDTRITDRGLRELSDFQN 172
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNL------NRCQLSDDGCEKFSKIGSLKVLNL 259
LT L L+ +T L +L L ++ L+L N +++D+G E+ S + L+ L L
Sbjct: 173 LTTLWLQNVEMTDDGLQALKRLKTITTLDLSNLNGLNTIRITDEGLEQLSDLPELRHLYL 232
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
I D L L+ L +L L+L I DEGL L GL L+ +L+ TQ+ +GL
Sbjct: 233 ANIPIADSGLTSLRRLKHLTVLDLRGTQITDEGLNELRGLHELETFKLTKTQISDAGLTA 292
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
L GL NL ++ + I+ L++L L LK+L+L Q+TD L L+S+ LT L L
Sbjct: 293 LKGLKNLTTLLIGSNQITGTGLQELTNLDQLKTLDLSDTQVTDVELNRLSSIRTLTDLRL 352
Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTLLNLSQNCNLTDKTL 438
ITD G LR K LR L + G +TD + + H++DL+ L L + +TD L
Sbjct: 353 SDTPITDVGLRSLRELKRLRRLTLGGTQITDISELNHLRDLTHLDL----RVTPITDTGL 408
Query: 439 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 490
+ L L SLN+ +++T A L LK L +L+ L+L ++ K L+
Sbjct: 409 HGLGDLKHLTSLNLDATQVTDASLSELKCLVHLKELSLSRTAISGLGFKSLE 460
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 135/379 (35%), Positives = 188/379 (49%), Gaps = 12/379 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD GL L D L+ L + I I+D GL LR L +LT L R IT +G+
Sbjct: 213 ITDEGLEQLSDLPELRHL-YLANIPIADSGLTSLRRLKHLTVLDLR-GTQITDEGLNELR 270
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
GL L L + GL LKGL L +L I N IT + ++ L+ L LK+L +S
Sbjct: 271 GLHELETFKLTKTQISDAGLTALKGLKNLTTLLI-GSNQITGTGLQELTNLDQLKTLDLS 329
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
++VTD + L ++ LT L L P+T L SL L L L L Q++D +
Sbjct: 330 DTQVTDVELNRLSSIRTLTDLRLSDTPITDVGLRSLRELKRLRRLTLGGTQITD--ISEL 387
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
+ + L L+L ITD L L L +L SLNLD+ + D L L L +LK L LS
Sbjct: 388 NHLRDLTHLDLRVTPITDTGLHGLGDLKHLTSLNLDATQVTDASLSELKCLVHLKELSLS 447
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
T + G + L L L + I+D LR++ L SLK+L + ++TD GLA L
Sbjct: 448 RTAISGLGFKSLERLEQLTVLRCDRCLIADEGLREICTLKSLKTLVISGTRVTDDGLAEL 507
Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
L GL L + +TD+G + L LR+L I +TD + IK L +LT+L +
Sbjct: 508 HQLEGLQELRIENNALTDAGMSELMVLGKLRTLGISHNKITDTSLSDIKRLKNLTMLRI- 566
Query: 429 QNCNLTDKTLELISGLTGL 447
+N +TD SGL G
Sbjct: 567 RNTEITD------SGLNGF 579
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 140/282 (49%), Gaps = 34/282 (12%)
Query: 245 CEKFSKIGSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
E+ ++ V+ + F E +++ L LK ++L L+L + I D L L L +
Sbjct: 41 IERDAEAPDHPVIGIAFEEAHKFSEKHLHLLKPFSDLSDLDLHAIPILDRDLKELADLTS 100
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DAR-- 358
L L LSDT++ GL HL LTNLE++ L T I+D +++LA L LNL D R
Sbjct: 101 LVNLNLSDTRITDRGLFHLKRLTNLETVWLQNTSITDAGIKELASFERLAELNLSDTRIT 160
Query: 359 ---------------------QITDTGLAALTSLTGLTHLDLFG------ARITDSGAAY 391
++TD GL AL L +T LDL RITD G
Sbjct: 161 DRGLRELSDFQNLTTLWLQNVEMTDDGLQALKRLKTITTLDLSNLNGLNTIRITDEGLEQ 220
Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
L + LR L + + D+G+ ++ L LT+L+L + +TD+ L + GL L +
Sbjct: 221 LSDLPELRHLYLANIPIADSGLTSLRRLKHLTVLDL-RGTQITDEGLNELRGLHELETFK 279
Query: 452 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 493
++ ++I+ AGL LK LKNL +L + S ++T ++ L + D
Sbjct: 280 LTKTQISDAGLTALKGLKNLTTLLIGSNQITGTGLQELTNLD 321
>gi|46446906|ref|YP_008271.1| hypothetical protein pc1272 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400547|emb|CAF23996.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 618
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 146/420 (34%), Positives = 206/420 (49%), Gaps = 57/420 (13%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
+ +TD+ L+ LK+C NL+ L C ++D GL +L L+ L
Sbjct: 236 NASLTDAHLLALKNCKNLKVLHLQECRNLTDAGLAYLTPLTTLQ---------------- 279
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
L+L C + GL +L L+ L+ LN+ C +TD+ + L+ LT L L
Sbjct: 280 ---------HLNLAGCKFANAGLAHLTPLVALQHLNLSHCRNLTDAGLPHLTLLTALTYL 330
Query: 186 QIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+S C +TD+G+A+L L LT LNL C +T A L L+ L +L YLNL+ C
Sbjct: 331 NLSHCRNITDAGLAHLTPLTALTYLNLSSCNNLTDAGLAHLTPLTALTYLNLSSC----- 385
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNL 302
N +TD L HL L L LNL C D GL +LT L L
Sbjct: 386 ------------------NNLTDAGLAHLTPLVTLTHLNLSWCYNFTDAGLAHLTPLVAL 427
Query: 303 KCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQ 359
+ L+L + + +GL HL+ L L +NLS+ +D L LA L +L+ L+L+ Q
Sbjct: 428 QHLDLGHCRNITDAGLAHLTPLVALTHLNLSWCYNFTDAGLAHLAPLVALQHLDLNGCWQ 487
Query: 360 ITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIK 417
+TD GLA L L LTHLDL +TD+G +L L+ L++ LTDAG+ H+
Sbjct: 488 LTDAGLAHLAPLVALTHLDLSSCNHLTDAGLPHLTPLVALQHLDLSYCRNLTDAGLAHLA 547
Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 476
L +LT LNLS + TD L ++ L L LN++ T AGL H K L +L L
Sbjct: 548 PLVALTHLNLSSCNHFTDAGLTHLTPLLALQDLNLNYCENFTDAGLAHFKSLATFPNLNL 607
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 132/360 (36%), Positives = 178/360 (49%), Gaps = 35/360 (9%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E LN +TD+ + L NLK L + C +TD+G+AYL L L LNL GC
Sbjct: 227 EIEELNFSKNASLTDAHLLALKNCKNLKVLHLQECRNLTDAGLAYLTPLTTLQHLNLAGC 286
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQ--------------------------LSDDGCEKF 248
A L L+ L +L +LNL+ C+ ++D G
Sbjct: 287 KFANAGLAHLTPLVALQHLNLSHCRNLTDAGLPHLTLLTALTYLNLSHCRNITDAGLAHL 346
Query: 249 SKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLE 306
+ + +L LNL N +TD L HL LT L LNL SC + D GL +LT L L L
Sbjct: 347 TPLTALTYLNLSSCNNLTDAGLAHLTPLTALTYLNLSSCNNLTDAGLAHLTPLVTLTHLN 406
Query: 307 LSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDT 363
LS +GL HL+ L L+ ++L I+D L L L +L LNL TD
Sbjct: 407 LSWCYNFTDAGLAHLTPLVALQHLDLGHCRNITDAGLAHLTPLVALTHLNLSWCYNFTDA 466
Query: 364 GLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSS 421
GLA L L L HLDL G ++TD+G A+L L L++ LTDAG+ H+ L +
Sbjct: 467 GLAHLAPLVALQHLDLNGCWQLTDAGLAHLAPLVALTHLDLSSCNHLTDAGLPHLTPLVA 526
Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 480
L L+LS NLTD L ++ L L LN+S+ + T AGL HL PL L+ L L C+
Sbjct: 527 LQHLDLSYCRNLTDAGLAHLAPLVALTHLNLSSCNHFTDAGLTHLTPLLALQDLNLNYCE 586
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 120/392 (30%), Positives = 187/392 (47%), Gaps = 38/392 (9%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLL 60
P +I + F++ + LT+ L A ++C L+ L L + + D + + + ++L
Sbjct: 224 FPNEIEELNFSK---NASLTDAHLLALKNCKNLKVLHLQECRNLTDAGLAYL-TPLTTLQ 279
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD------------------------ 96
++L+G ++GL HL LQ L+ + C ++D
Sbjct: 280 HLNLAGCKFANAGLAHLTPLVALQHLNLSHCRNLTDAGLPHLTLLTALTYLNLSHCRNIT 339
Query: 97 -GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGL 154
GL HL L+ LT L+ N +T G+ L L L+L C + GL +L L
Sbjct: 340 DAGLAHLTPLTALTYLNLSSCNNLTDAGLAHLTPLTALTYLNLSSCNNLTDAGLAHLTPL 399
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ L LN+ WC TD+ + L+ L L+ L + C +TD+G+A+L L LT LNL
Sbjct: 400 VTLTHLNLSWCYNFTDAGLAHLTPLVALQHLDLGHCRNITDAGLAHLTPLVALTHLNLSW 459
Query: 214 CP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLV 270
C T A L L+ L +L +L+LN C QL+D G + + +L L+L N +TD L
Sbjct: 460 CYNFTDAGLAHLAPLVALQHLDLNGCWQLTDAGLAHLAPLVALTHLDLSSCNHLTDAGLP 519
Query: 271 HLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLES 328
HL L L+ L+L C + D GL +L L L L LS +GL HL+ L L+
Sbjct: 520 HLTPLVALQHLDLSYCRNLTDAGLAHLAPLVALTHLNLSSCNHFTDAGLTHLTPLLALQD 579
Query: 329 INLSF-TGISDGSLRKLAGLSSLKSLNLDARQ 359
+NL++ +D L L++ +LNL Q
Sbjct: 580 LNLNYCENFTDAGLAHFKSLATFPNLNLICYQ 611
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 101/208 (48%), Gaps = 40/208 (19%)
Query: 312 VGSSGLRHLSGLTNLESI---------NLSFT---GISDGSLRKLAGLSSLKSLNL-DAR 358
V SS L S LT E I L+F+ ++D L L +LK L+L + R
Sbjct: 203 VVSSLLNQTSHLTGFEKILNHFPNEIEELNFSKNASLTDAHLLALKNCKNLKVLHLQECR 262
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR--------NFKNLRSLEICGG---- 406
+TD GLA LT LT L HL+L G + ++G A+L N + R+L G
Sbjct: 263 NLTDAGLAYLTPLTTLQHLNLAGCKFANAGLAHLTPLVALQHLNLSHCRNLTDAGLPHLT 322
Query: 407 --------------GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
+TDAG+ H+ L++LT LNLS NLTD L ++ LT L LN+
Sbjct: 323 LLTALTYLNLSHCRNITDAGLAHLTPLTALTYLNLSSCNNLTDAGLAHLTPLTALTYLNL 382
Query: 453 SN-SRITSAGLRHLKPLKNLRSLTLESC 479
S+ + +T AGL HL PL L L L C
Sbjct: 383 SSCNNLTDAGLAHLTPLVTLTHLNLSWC 410
>gi|414586495|tpg|DAA37066.1| TPA: hypothetical protein ZEAMMB73_067914 [Zea mays]
Length = 115
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 99/112 (88%)
Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
R FKN++SLE+CGG +TDAGVK+IKDL +LTLLNLSQN LTDKTLELISGLT LVSLN
Sbjct: 4 FRFFKNIQSLEVCGGLITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLN 63
Query: 452 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 503
VSNSR++++GL HLKPL+NLRSL+LESC+VTA+++ +L+ LPNL+S RPE
Sbjct: 64 VSNSRVSNSGLHHLKPLQNLRSLSLESCRVTASEMDKLRLVALPNLISVRPE 115
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 51/79 (64%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
G+ N+K L L LN+ +TD ++ +SGLT L SL +S S+V++SG+ +LK LQ
Sbjct: 23 AGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSRVSNSGLHHLKPLQN 82
Query: 206 LTLLNLEGCPVTAACLDSL 224
L L+LE C VTA+ +D L
Sbjct: 83 LRSLSLESCRVTASEMDKL 101
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 25/109 (22%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNL-EGCPVTAACLDSLSALGSLFYLNLNRCQ 239
N++SL++ +TD+G+ +K L+ LTLLNL + +T L+ +S L +L LN++ +
Sbjct: 9 NIQSLEVCGGLITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSR 68
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
+S+ G L HLK L NL SL+L+SC +
Sbjct: 69 VSNSG------------------------LHHLKPLQNLRSLSLESCRV 93
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQ 359
N++ LE+ + +G++++ L L +NLS G ++D +L ++GL++L SLN+ +
Sbjct: 9 NIQSLEVCGGLITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSR 68
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
++++GL L L L L L R+T S LR
Sbjct: 69 VSNSGLHHLKPLQNLRSLSLESCRVTASEMDKLR 102
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 62/107 (57%), Gaps = 4/107 (3%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
N+QSL+ + I+D G+++++ L LT L+ +N +T + ++ +GL LV L++
Sbjct: 9 NIQSLEVCGGL-ITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNS 67
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS--GLTNLKSLQ 186
+ GL +LK L L SL+++ C +T S+M L L NL S++
Sbjct: 68 RVSNSGLHHLKPLQNLRSLSLESCR-VTASEMDKLRLVALPNLISVR 113
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGAR 383
N++S+ + I+D ++ + L +L LNL ++TD L ++ LT L L++ +R
Sbjct: 9 NIQSLEVCGGLITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSR 68
Query: 384 ITDSGAAYLRNFKNLRSLEI 403
+++SG +L+ +NLRSL +
Sbjct: 69 VSNSGLHHLKPLQNLRSLSL 88
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 57/95 (60%), Gaps = 5/95 (5%)
Query: 20 LTEVSLEAFRDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLK 78
+T+ ++ +D AL L L Q + DK +++I S ++L+S+++S S V++SGL HLK
Sbjct: 20 ITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELI-SGLTALVSLNVSNSRVSNSGLHHLK 78
Query: 79 DCSNLQSLDFNFCIQISDGGLEHLR--GLSNLTSL 111
NL+SL C +++ ++ LR L NL S+
Sbjct: 79 PLQNLRSLSLESC-RVTASEMDKLRLVALPNLISV 112
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 264 ITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
ITD + ++K L L LNL G + D+ L ++GL L L +S+++V +SGL HL
Sbjct: 20 ITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSRVSNSGLHHLKP 79
Query: 323 LTNLESINLSFTGISDGSLRKL 344
L NL S++L ++ + KL
Sbjct: 80 LQNLRSLSLESCRVTASEMDKL 101
>gi|46446912|ref|YP_008277.1| hypothetical protein pc1278 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400553|emb|CAF24002.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 731
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 152/435 (34%), Positives = 225/435 (51%), Gaps = 38/435 (8%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSN-LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
SSLL+ S VT+ I LK SN ++ L+F+ ++D L L+ NL +L +
Sbjct: 301 SSLLN---QASHVTEFEKI-LKHFSNEIERLNFSKNASLTDAHLLALKNCKNLKALHLQE 356
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+T G+ A L++L L+L C ++ GL +L L+ L LN+ CN +T++ +
Sbjct: 357 CYKLTDTGLVYLAPLVSLQYLNLFDCIKLTDAGLAHLTPLVALRHLNLMGCNKLTNAGLM 416
Query: 175 PLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFY 232
L L L+ L +SC + +TD+G+A+L L L L L C +T A L L L +L +
Sbjct: 417 HLRPLMALQHLDLSCCRNLTDAGLAHLAPLVALQHLCLSECTNLTGAGLAHLKPLVNLQH 476
Query: 233 LNLNRC-QLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSC-GIG 289
LNLN C +L+D G + + +L+ L+L +TD L HL+ L L+ L+L+ C
Sbjct: 477 LNLNSCYKLTDAGLAHLTPLMALQHLDLSCCRNLTDAGLAHLRPLVALQHLDLNCCKNFT 536
Query: 290 DEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGL 347
D GL +LT L L+ L LS + + +GL +L L L +NL+ +D L LA L
Sbjct: 537 DAGLTHLTPLVALQHLNLSCCRNLTDAGLAYLMPLVALSHLNLAGCHNFTDAGLAHLAPL 596
Query: 348 SSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
+L+ LNL D ++T+ GL LT L L HLDL
Sbjct: 597 VALQHLNLGDCYRLTNAGLEHLTPLVALQHLDLSECE----------------------- 633
Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHL 465
LTDAG+ H+ L +LT L+LS+ LTD L ++ L L LN++ ++T AGL HL
Sbjct: 634 KLTDAGLTHLVPLVALTHLDLSECDKLTDAGLAHLTPLEALQHLNLNWCDKLTDAGLAHL 693
Query: 466 KPLKNLRSLTLESCK 480
PL L+ L L CK
Sbjct: 694 TPLLALQDLYLGYCK 708
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 137/411 (33%), Positives = 214/411 (52%), Gaps = 33/411 (8%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
+ +TD+ L+ LK+C NL++L C +++D GL +L L +L L+ +T G+
Sbjct: 332 NASLTDAHLLALKNCKNLKALHLQECYKLTDTGLVYLAPLVSLQYLNLFDCIKLTDAGLA 391
Query: 126 AFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
L+ L L+L C ++ + GL++L+ LM L+ L++ C +TD+ + L+ L L+
Sbjct: 392 HLTPLVALRHLNLMGCNKLTNAGLMHLRPLMALQHLDLSCCRNLTDAGLAHLAPLVALQH 451
Query: 185 LQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSD 242
L +S C+ +T +G+A+LK L L LNL C +T A L L+ L +L +L+L+ C+
Sbjct: 452 LCLSECTNLTGAGLAHLKPLVNLQHLNLNSCYKLTDAGLAHLTPLMALQHLDLSCCR--- 508
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
+TD L HL+ L L+ L+L+ C D GL +LT L
Sbjct: 509 --------------------NLTDAGLAHLRPLVALQHLDLNCCKNFTDAGLTHLTPLVA 548
Query: 302 LKCLELSDTQ-VGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNL-DAR 358
L+ L LS + + +GL +L L L +NL+ +D L LA L +L+ LNL D
Sbjct: 549 LQHLNLSCCRNLTDAGLAYLMPLVALSHLNLAGCHNFTDAGLAHLAPLVALQHLNLGDCY 608
Query: 359 QITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI 416
++T+ GL LT L L HLDL ++TD+G +L L L++ LTDAG+ H+
Sbjct: 609 RLTNAGLEHLTPLVALQHLDLSECEKLTDAGLTHLVPLVALTHLDLSECDKLTDAGLAHL 668
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLK 466
L +L LNL+ LTD L ++ L L L + + T GL H K
Sbjct: 669 TPLEALQHLNLNWCDKLTDAGLAHLTPLLALQDLYLGYCKNFTEVGLAHFK 719
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 130/370 (35%), Positives = 199/370 (53%), Gaps = 13/370 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL++L +LQ L+ CI+++D GL HL L L L+ N +T G+
Sbjct: 360 LTDTGLVYLAPLVSLQYLNLFDCIKLTDAGLAHLTPLVALRHLNLMGCNKLTNAGLMHLR 419
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ L LDL C + GL +L L+ L+ L + C +T + + L L NL+ L +
Sbjct: 420 PLMALQHLDLSCCRNLTDAGLAHLAPLVALQHLCLSECTNLTGAGLAHLKPLVNLQHLNL 479
Query: 188 -SCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDG 244
SC K+TD+G+A+L L L L+L C +T A L L L +L +L+LN C+ +D G
Sbjct: 480 NSCYKLTDAGLAHLTPLMALQHLDLSCCRNLTDAGLAHLRPLVALQHLDLNCCKNFTDAG 539
Query: 245 CEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNL 302
+ + +L+ LNL +TD L +L L L LNL C D GL +L L L
Sbjct: 540 LTHLTPLVALQHLNLSCCRNLTDAGLAYLMPLVALSHLNLAGCHNFTDAGLAHLAPLVAL 599
Query: 303 KCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQ 359
+ L L D ++ ++GL HL+ L L+ ++LS ++D L L L +L L+L + +
Sbjct: 600 QHLNLGDCYRLTNAGLEHLTPLVALQHLDLSECEKLTDAGLTHLVPLVALTHLDLSECDK 659
Query: 360 ITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIK 417
+TD GLA LT L L HL+L + ++TD+G A+L L+ L + T+ G+ H K
Sbjct: 660 LTDAGLAHLTPLEALQHLNLNWCDKLTDAGLAHLTPLLALQDLYLGYCKNFTEVGLAHFK 719
Query: 418 DLSSLTLLNL 427
SS+ L+L
Sbjct: 720 --SSVAPLHL 727
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 58 SLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DLS D +TD+GL HL LQ L+ N+C +++D GL HL L L L
Sbjct: 648 ALTHLDLSECDKLTDAGLAHLTPLEALQHLNLNWCDKLTDAGLAHLTPLLALQDLYLGYC 707
Query: 117 NAITAQGMKAFAGLINLVKLDLER 140
T G+ F + + L + R
Sbjct: 708 KNFTEVGLAHFKSSVAPLHLKIIR 731
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS-RITSAGLR 463
LTDA + +K+ +L L+L + LTD L ++ L L LN+ + ++T AGL
Sbjct: 332 NASLTDAHLLALKNCKNLKALHLQECYKLTDTGLVYLAPLVSLQYLNLFDCIKLTDAGLA 391
Query: 464 HLKPLKNLRSLTLESCKVTAN 484
HL PL LR L L C N
Sbjct: 392 HLTPLVALRHLNLMGCNKLTN 412
>gi|348688896|gb|EGZ28710.1| hypothetical protein PHYSODRAFT_322345 [Phytophthora sojae]
Length = 683
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 144/423 (34%), Positives = 223/423 (52%), Gaps = 17/423 (4%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA--ITAQGMKAFAGLINLVKLDLER 140
L L C Q+ D G+ L L +LT+L+ N +T G+ A AG+ +L L+L
Sbjct: 255 LNYLSLRGCSQVGDIGIRELARLKHLTTLNLWYANQGNLTDDGISALAGVTSLTSLNLSN 314
Query: 141 CTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIA 198
C+++ G+ +L L+ L L +TD+ +K L+ L +L +L I+ C +TD+G +
Sbjct: 315 CSQLTDVGISSLGALVNLRHLEFANVGEVTDNGLKALAPLVDLITLDIAGCYNITDAGTS 374
Query: 199 YLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV 256
L L+ NL C + + + +L + +LN +C +++D G SK+ +L
Sbjct: 375 VLANFPNLSSCNLWYCSEIGDTTFEHMESLTKMRFLNFMKCGKVTDKGLRSISKLRNLTS 434
Query: 257 LNL--GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQV 312
L++ FN +TD+ L L GL L+SL L C GI D+G+ L+ L +L L+LS+ QV
Sbjct: 435 LDMVSCFN-VTDDGLNELVGLHRLKSLYLGGCSGIRDDGIAALSQLKSLVILDLSNCRQV 493
Query: 313 GSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS 370
G+ L L L NL ++NL I D + LAGL LK+LNL + R +TD +
Sbjct: 494 GNKALLGLGELHNLTNLNLMRCNRIDDEGIAYLAGLKRLKTLNLSNCRLLTDAATTTIAQ 553
Query: 371 LTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLS 428
+T L + L+ ++TD+G L + L+S+++ LTDA + + LT L+L
Sbjct: 554 MTELESIVLWYCNKLTDTGVMNLASLTKLQSIDLASCSKLTDACLSTFPSIPKLTSLDLG 613
Query: 429 QNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC-KVTANDI 486
C LTD+ + + +T L SLN+S IT AGL HL L NL ++ L C KVT I
Sbjct: 614 NCCLLTDEGMATLGKVTSLTSLNLSECGEITDAGLAHLAALVNLTNINLWYCTKVTKTGI 673
Query: 487 KRL 489
L
Sbjct: 674 DHL 676
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 129/371 (34%), Positives = 200/371 (53%), Gaps = 11/371 (2%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD G+ L ++L SL+ + C Q++D G+ L L NL L F +T G+KA
Sbjct: 292 NLTDDGISALAGVTSLTSLNLSNCSQLTDVGISSLGALVNLRHLEFANVGEVTDNGLKAL 351
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
A L++L+ LD+ C I G L L S N+ +C+ I D+ + + LT ++ L
Sbjct: 352 APLVDLITLDIAGCYNITDAGTSVLANFPNLSSCNLWYCSEIGDTTFEHMESLTKMRFLN 411
Query: 187 -ISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDD 243
+ C KVTD G+ + L+ LT L++ C VT L+ L L L L L C + DD
Sbjct: 412 FMKCGKVTDKGLRSISKLRNLTSLDMVSCFNVTDDGLNELVGLHRLKSLYLGGCSGIRDD 471
Query: 244 GCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN 301
G S++ SL +L+L ++ ++ L+ L L NL +LNL C I DEG+ L GL
Sbjct: 472 GIAALSQLKSLVILDLSNCRQVGNKALLGLGELHNLTNLNLMRCNRIDDEGIAYLAGLKR 531
Query: 302 LKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-R 358
LK L LS+ + + + ++ +T LESI L + ++D + LA L+ L+S++L +
Sbjct: 532 LKTLNLSNCRLLTDAATTTIAQMTELESIVLWYCNKLTDTGVMNLASLTKLQSIDLASCS 591
Query: 359 QITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI 416
++TD L+ S+ LT LDL +TD G A L +L SL + G +TDAG+ H+
Sbjct: 592 KLTDACLSTFPSIPKLTSLDLGNCCLLTDEGMATLGKVTSLTSLNLSECGEITDAGLAHL 651
Query: 417 KDLSSLTLLNL 427
L +LT +NL
Sbjct: 652 AALVNLTNINL 662
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 145/274 (52%), Gaps = 7/274 (2%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
S++ D+ H++ + ++ L+F C +++D GL + L NLTSL +T G+
Sbjct: 391 SEIGDTTFEHMESLTKMRFLNFMKCGKVTDKGLRSISKLRNLTSLDMVSCFNVTDDGLNE 450
Query: 127 FAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
GL L L L C+ I G+ L L L L++ C + + + L L NL +L
Sbjct: 451 LVGLHRLKSLYLGGCSGIRDDGIAALSQLKSLVILDLSNCRQVGNKALLGLGELHNLTNL 510
Query: 186 Q-ISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSD 242
+ C+++ D GIAYL GL++L LNL C +T A +++ + L + L C +L+D
Sbjct: 511 NLMRCNRIDDEGIAYLAGLKRLKTLNLSNCRLLTDAATTTIAQMTELESIVLWYCNKLTD 570
Query: 243 DGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLC 300
G + + L+ ++L +++TD CL + L SL+L +C + DEG+ L +
Sbjct: 571 TGVMNLASLTKLQSIDLASCSKLTDACLSTFPSIPKLTSLDLGNCCLLTDEGMATLGKVT 630
Query: 301 NLKCLELSDT-QVGSSGLRHLSGLTNLESINLSF 333
+L L LS+ ++ +GL HL+ L NL +INL +
Sbjct: 631 SLTSLNLSECGEITDAGLAHLAALVNLTNINLWY 664
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 110/223 (49%), Gaps = 26/223 (11%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
S + D G+ L +L LD + C Q+ + L L L NLT+L+ R N I +G+
Sbjct: 466 SGIRDDGIAALSQLKSLVILDLSNCRQVGNKALLGLGELHNLTNLNLMRCNRIDDEGIAY 525
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
AGL L L+L C + + + +LES+ + +CN +TD+ + L+ LT L+S+
Sbjct: 526 LAGLKRLKTLNLSNCRLLTDAATTTIAQMTELESIVLWYCNKLTDTGVMNLASLTKLQSI 585
Query: 186 QI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
+ SCSK+TD+ ++ + KLT L+L C C L+D+G
Sbjct: 586 DLASCSKLTDACLSTFPSIPKLTSLDLGNC-----------------------CLLTDEG 622
Query: 245 CEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSC 286
K+ SL LNL EITD L HL L NL ++NL C
Sbjct: 623 MATLGKVTSLTSLNLSECGEITDAGLAHLAALVNLTNINLWYC 665
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 89/192 (46%), Gaps = 35/192 (18%)
Query: 323 LTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAAL------------ 368
NL+ +NL+ + ++D S+ +LA + ++S+ L Q+TD G+ AL
Sbjct: 174 FPNLKEVNLTGCSNLTDESVEQLAQIPRMESIALKGCYQVTDKGIIALTESLSSSLTSLN 233
Query: 369 ----------------TSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEIC---GGGL 408
+L L +L L G +++ D G L K+L +L + G L
Sbjct: 234 LGYCKVVSDEAVSAIAANLPKLNYLSLRGCSQVGDIGIRELARLKHLTTLNLWYANQGNL 293
Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKP 467
TD G+ + ++SLT LNLS LTD + + L L L +N +T GL+ L P
Sbjct: 294 TDDGISALAGVTSLTSLNLSNCSQLTDVGISSLGALVNLRHLEFANVGEVTDNGLKALAP 353
Query: 468 LKNLRSLTLESC 479
L +L +L + C
Sbjct: 354 LVDLITLDIAGC 365
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 57 SSLLSVDL-SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
+ L S+DL S S +TD+ L L SLD C ++D G+ L +++LTSL+
Sbjct: 580 TKLQSIDLASCSKLTDACLSTFPSIPKLTSLDLGNCCLLTDEGMATLGKVTSLTSLNLSE 639
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI 144
IT G+ A L+NL ++L CT++
Sbjct: 640 CGEITDAGLAHLAALVNLTNINLWYCTKV 668
>gi|406835014|ref|ZP_11094608.1| hypothetical protein SpalD1_25335 [Schlesneria paludicola DSM
18645]
Length = 497
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 135/396 (34%), Positives = 203/396 (51%), Gaps = 6/396 (1%)
Query: 77 LKDCSNLQSLDF-NF-CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
L S+L +L F NF QI+ L L GL NLTSL F N I+ +G+ L NL
Sbjct: 96 LMPFSHLTTLVFSNFKSSQITSARLSDLSGLKNLTSLHFE-NTEISNEGIHELQELKNLT 154
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L L GL NL+ + KL +L++ N I+D K L L +L SL + + D
Sbjct: 155 TLSLHTTHVTDAGLRNLREVSKLTTLSLSG-NSISDDGFKELGELKHLSSLSLRLENIDD 213
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
+ + L+ L L+L +T + L L + +L L L +++D G + + +L
Sbjct: 214 VQLDEISKLENLKTLSLHVPSITDSELKQLRTVKNLTKLFLINSKITDAGLKPLLDLKNL 273
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVG 313
L+L +ITD L + L NL SL L+ CG I D G L + NLK L L+ +
Sbjct: 274 TDLDLSSTQITDAGLKEIGQLENLTSLYLEGCGGITDVGFRELRNIKNLKRLALARCGIT 333
Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
G++ L L +LE ++LS T I+D ++++ GL++L +L L ITD GL + L
Sbjct: 334 DLGMKGLGQLKSLELLDLSRTPITDHGIQEIGGLTNLSTLWLLGSNITDLGLREINGLEN 393
Query: 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCN 432
L L L A ITD+G L F N+ L + G+TDAG+K ++DL L++ L N
Sbjct: 394 LKELYLKSAFITDAGMKELGKFHNMNMLHLIQCDGITDAGLKELRDLKKLSMFELYGCRN 453
Query: 433 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 468
+TD ++ + L LNV +++T +G+ LK L
Sbjct: 454 VTDAGIDELKEHKQLTILNVGATQVTVSGVNKLKEL 489
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 114/318 (35%), Positives = 168/318 (52%), Gaps = 2/318 (0%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ P S LT L S++T + ++ L GL+ LT L+ E ++ + L L +L
Sbjct: 96 LMPFSHLTTLVFSNFKSSQITSARLSDLSGLKNLTSLHFENTEISNEGIHELQELKNLTT 155
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L+L+ ++D G ++ L L+L N I+D+ L L +L SL+L I D
Sbjct: 156 LSLHTTHVTDAGLRNLREVSKLTTLSLSGNSISDDGFKELGELKHLSSLSLRLENIDDVQ 215
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
L ++ L NLK L L + S L+ L + NL + L + I+D L+ L L +L
Sbjct: 216 LDEISKLENLKTLSLHVPSITDSELKQLRTVKNLTKLFLINSKITDAGLKPLLDLKNLTD 275
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
L+L + QITD GL + L LT L L G ITD G LRN KNL+ L + G+TD
Sbjct: 276 LDLSSTQITDAGLKEIGQLENLTSLYLEGCGGITDVGFRELRNIKNLKRLALARCGITDL 335
Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 471
G+K + L SL LL+LS+ +TD ++ I GLT L +L + S IT GLR + L+NL
Sbjct: 336 GMKGLGQLKSLELLDLSRTP-ITDHGIQEIGGLTNLSTLWLLGSNITDLGLREINGLENL 394
Query: 472 RSLTLESCKVTANDIKRL 489
+ L L+S +T +K L
Sbjct: 395 KELYLKSAFITDAGMKEL 412
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 122/372 (32%), Positives = 183/372 (49%), Gaps = 5/372 (1%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ F+ L LV + + L +L GL L SL+ + I++ + L L NL
Sbjct: 96 LMPFSHLTTLVFSNFKSSQITSARLSDLSGLKNLTSLHFENTE-ISNEGIHELQELKNLT 154
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+L + + VTD+G+ L+ + KLT L+L G ++ L L L L+L + D
Sbjct: 155 TLSLHTTHVTDAGLRNLREVSKLTTLSLSGNSISDDGFKELGELKHLSSLSLRLENIDDV 214
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
++ SK+ +LK L+L ITD L L+ + NL L L + I D GL L L NL
Sbjct: 215 QLDEISKLENLKTLSLHVPSITDSELKQLRTVKNLTKLFLINSKITDAGLKPLLDLKNLT 274
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITD 362
L+LS TQ+ +GL+ + L NL S+ L GI+D R+L + +LK L L ITD
Sbjct: 275 DLDLSSTQITDAGLKEIGQLENLTSLYLEGCGGITDVGFRELRNIKNLKRLALARCGITD 334
Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
G+ L L L LDL ITD G + NL +L + G +TD G++ I L +L
Sbjct: 335 LGMKGLGQLKSLELLDLSRTPITDHGIQEIGGLTNLSTLWLLGSNITDLGLREINGLENL 394
Query: 423 TLLNLSQNCNLTDKTLELISGLTGLVSLN-VSNSRITSAGLRHLKPLKNLRSLTLESCK- 480
L L ++ +TD ++ + + L+ + IT AGL+ L+ LK L L C+
Sbjct: 395 KELYL-KSAFITDAGMKELGKFHNMNMLHLIQCDGITDAGLKELRDLKKLSMFELYGCRN 453
Query: 481 VTANDIKRLQSR 492
VT I L+
Sbjct: 454 VTDAGIDELKEH 465
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 120/367 (32%), Positives = 181/367 (49%), Gaps = 34/367 (9%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L ++ L + VTD+GL +L++ S L +L + ISD G + L L +L+SLS R N
Sbjct: 152 NLTTLSLHTTHVTDAGLRNLREVSKLTTLSLSGN-SISDDGFKELGELKHLSSLSLRLEN 210
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL---KGLMKLESLNIKWCNCITDSDMK 174
Q + + L NL L L + L L K L KL +N K ITD+ +K
Sbjct: 211 IDDVQ-LDEISKLENLKTLSLHVPSITDSELKQLRTVKNLTKLFLINSK----ITDAGLK 265
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYL 233
PL L NL L +S +++TD+G+ + L+ LT L LEGC +T L + +L L
Sbjct: 266 PLLDLKNLTDLDLSSTQITDAGLKEIGQLENLTSLYLEGCGGITDVGFRELRNIKNLKRL 325
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
L RC ++D G + ++ SL++L+L ITD + + GLTNL +L L I D GL
Sbjct: 326 ALARCGITDLGMKGLGQLKSLELLDLSRTPITDHGIQEIGGLTNLSTLWLLGSNITDLGL 385
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
+ GL NLK L L + +G++ L N+ ++L
Sbjct: 386 REINGLENLKELYLKSAFITDAGMKELGKFHNMNMLHL---------------------- 423
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
+ ITD GL L L L+ +L+G R +TD+G L+ K L L + +T +G
Sbjct: 424 -IQCDGITDAGLKELRDLKKLSMFELYGCRNVTDAGIDELKEHKQLTILNVGATQVTVSG 482
Query: 413 VKHIKDL 419
V +K+L
Sbjct: 483 VNKLKEL 489
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 115/219 (52%), Gaps = 1/219 (0%)
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
FNE L+ LT L N S I L +L+GL NL L +T++ + G+ L
Sbjct: 88 FNEKHLNLLMPFSHLTTLVFSNFKSSQITSARLSDLSGLKNLTSLHFENTEISNEGIHEL 147
Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
L NL +++L T ++D LR L +S L +L+L I+D G L L L+ L L
Sbjct: 148 QELKNLTTLSLHTTHVTDAGLRNLREVSKLTTLSLSGNSISDDGFKELGELKHLSSLSLR 207
Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
I D + +NL++L + +TD+ +K ++ + +LT L L N +TD L+
Sbjct: 208 LENIDDVQLDEISKLENLKTLSLHVPSITDSELKQLRTVKNLTKLFLI-NSKITDAGLKP 266
Query: 441 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 479
+ L L L++S+++IT AGL+ + L+NL SL LE C
Sbjct: 267 LLDLKNLTDLDLSSTQITDAGLKEIGQLENLTSLYLEGC 305
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 90/186 (48%), Gaps = 6/186 (3%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLK 78
+T+V R+ L+ L L + G+ D M + Q SL +DLS + +TD G+ +
Sbjct: 308 ITDVGFRELRNIKNLKRLALARC-GITDLGMKGLG-QLKSLELLDLSRTPITDHGIQEIG 365
Query: 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
+NL +L + I+D GL + GL NL L + ++ IT GMK N+ L L
Sbjct: 366 GLTNLSTL-WLLGSNITDLGLREINGLENLKEL-YLKSAFITDAGMKELGKFHNMNMLHL 423
Query: 139 ERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
+C I GL L+ L KL + C +TD+ + L L L + ++VT SG+
Sbjct: 424 IQCDGITDAGLKELRDLKKLSMFELYGCRNVTDAGIDELKEHKQLTILNVGATQVTVSGV 483
Query: 198 AYLKGL 203
LK L
Sbjct: 484 NKLKEL 489
>gi|46447300|ref|YP_008665.1| hypothetical protein pc1666 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400941|emb|CAF24390.1| hypothetical protein pc1666 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 518
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 131/343 (38%), Positives = 190/343 (55%), Gaps = 13/343 (3%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+K F+ I + E I L+ LK L+ L ++ C+ +TD+ + L+ L L+
Sbjct: 179 LKFFSNEIEALNFS-ENTYLIDAHLLTLKNCKNLKVLYLQECHNLTDAGLSHLAPLVTLQ 237
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QL 240
L +S CSK+TD+G+A+L L L L+L C +T A L L+ L +L +LNL+ C +L
Sbjct: 238 HLNLSYCSKLTDAGLAHLTSLVTLQHLDLSKCYNLTDAGLTHLTPLAALQHLNLSYCSKL 297
Query: 241 SDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 298
+D G + + +L+ L+L + +TD L HL L L+ LNL C + D GL +LT
Sbjct: 298 TDAGLAHLTSLVTLQHLDLTWCVNLTDVGLAHLTPLAALQHLNLSYCIKLTDVGLAHLTS 357
Query: 299 LCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD 356
L L+ L+L+ + GL HL+ L L+ + LS ++D L L L +L+ LNL
Sbjct: 358 LVALQHLDLTWCVNLTEVGLAHLTPLVTLQHLELSKCHNLTDAGLAHLTSLVALQHLNLS 417
Query: 357 A-RQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEI-CGGGLTDAGV 413
++ITD GLA LT L L HLDL G ++TD G A+L L+ L++ C LTDAG+
Sbjct: 418 ICKKITDVGLAHLTPLVALQHLDLSGCDKLTDVGLAHLTTLVALQHLDLTCCVNLTDAGL 477
Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456
H+K L +L LNLS NLTD L LT SLN+ SR
Sbjct: 478 VHLKPLMALQHLNLSYCTNLTDAGLAHFKNLT--TSLNLKLSR 518
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 104/296 (35%), Positives = 162/296 (54%), Gaps = 10/296 (3%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL LQ L+ ++C +++D GL HL L L L + +T G+
Sbjct: 221 NLTDAGLSHLAPLVTLQHLNLSYCSKLTDAGLAHLTSLVTLQHLDLSKCYNLTDAGLTHL 280
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L L L+L C+++ GL +L L+ L+ L++ WC +TD + L+ L L+ L
Sbjct: 281 TPLAALQHLNLSYCSKLTDAGLAHLTSLVTLQHLDLTWCVNLTDVGLAHLTPLAALQHLN 340
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDD 243
+S C K+TD G+A+L L L L+L C +T L L+ L +L +L L++C L+D
Sbjct: 341 LSYCIKLTDVGLAHLTSLVALQHLDLTWCVNLTEVGLAHLTPLVTLQHLELSKCHNLTDA 400
Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
G + + +L+ LNL +ITD L HL L L+ L+L C + D GL +LT L
Sbjct: 401 GLAHLTSLVALQHLNLSICKKITDVGLAHLTPLVALQHLDLSGCDKLTDVGLAHLTTLVA 460
Query: 302 LKCLELS-DTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL 355
L+ L+L+ + +GL HL L L+ +NLS+ T ++D L L++ SLNL
Sbjct: 461 LQHLDLTCCVNLTDAGLVHLKPLMALQHLNLSYCTNLTDAGLAHFKNLTT--SLNL 514
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 108/311 (34%), Positives = 167/311 (53%), Gaps = 9/311 (2%)
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D+ L+ LK+C NL+ L C ++D GL HL L L L+ + +T G+ L
Sbjct: 199 DAHLLTLKNCKNLKVLYLQECHNLTDAGLSHLAPLVTLQHLNLSYCSKLTDAGLAHLTSL 258
Query: 131 INLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
+ L LDL +C + GL +L L L+ LN+ +C+ +TD+ + L+ L L+ L ++
Sbjct: 259 VTLQHLDLSKCYNLTDAGLTHLTPLAALQHLNLSYCSKLTDAGLAHLTSLVTLQHLDLTW 318
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCE 246
C +TD G+A+L L L LNL C +T L L++L +L +L+L C L++ G
Sbjct: 319 CVNLTDVGLAHLTPLAALQHLNLSYCIKLTDVGLAHLTSLVALQHLDLTWCVNLTEVGLA 378
Query: 247 KFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKC 304
+ + +L+ L L + +TD L HL L L+ LNL C I D GL +LT L L+
Sbjct: 379 HLTPLVTLQHLELSKCHNLTDAGLAHLTSLVALQHLNLSICKKITDVGLAHLTPLVALQH 438
Query: 305 LELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQIT 361
L+LS ++ GL HL+ L L+ ++L+ ++D L L L +L+ LNL +T
Sbjct: 439 LDLSGCDKLTDVGLAHLTTLVALQHLDLTCCVNLTDAGLVHLKPLMALQHLNLSYCTNLT 498
Query: 362 DTGLAALTSLT 372
D GLA +LT
Sbjct: 499 DAGLAHFKNLT 509
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 116/334 (34%), Positives = 176/334 (52%), Gaps = 34/334 (10%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E+LN + D+ + L NLK L + C +TD+G+++L L L LNL C
Sbjct: 185 EIEALNFSENTYLIDAHLLTLKNCKNLKVLYLQECHNLTDAGLSHLAPLVTLQHLNLSYC 244
Query: 215 -PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVH 271
+T A L L++L +L +L+L++C L+D G + + +L+ LNL + +++TD L H
Sbjct: 245 SKLTDAGLAHLTSLVTLQHLDLSKCYNLTDAGLTHLTPLAALQHLNLSYCSKLTDAGLAH 304
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESI 329
L L L+ L+L C + D GL +LT L L+ L LS ++ GL HL+ L L+ +
Sbjct: 305 LTSLVTLQHLDLTWCVNLTDVGLAHLTPLAALQHLNLSYCIKLTDVGLAHLTSLVALQHL 364
Query: 330 NLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITD 386
+L++ +++ L L L +L+ L L +TD GLA LTSL L HL+L +ITD
Sbjct: 365 DLTWCVNLTEVGLAHLTPLVTLQHLELSKCHNLTDAGLAHLTSLVALQHLNLSICKKITD 424
Query: 387 SGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 445
G A+L L+ L++ G LTD G+ H+ L +L L+L+ NLTD
Sbjct: 425 VGLAHLTPLVALQHLDLSGCDKLTDVGLAHLTTLVALQHLDLTCCVNLTD---------- 474
Query: 446 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 479
AGL HLKPL L+ L L C
Sbjct: 475 --------------AGLVHLKPLMALQHLNLSYC 494
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/275 (35%), Positives = 149/275 (54%), Gaps = 9/275 (3%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
S +TD+GL HL LQ LD + C ++D GL HL L+ L L+ + +T G+
Sbjct: 245 SKLTDAGLAHLTSLVTLQHLDLSKCYNLTDAGLTHLTPLAALQHLNLSYCSKLTDAGLAH 304
Query: 127 FAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
L+ L LDL C + GL +L L L+ LN+ +C +TD + L+ L L+ L
Sbjct: 305 LTSLVTLQHLDLTWCVNLTDVGLAHLTPLAALQHLNLSYCIKLTDVGLAHLTSLVALQHL 364
Query: 186 QIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSD 242
++ C +T+ G+A+L L L L L C +T A L L++L +L +LNL+ C +++D
Sbjct: 365 DLTWCVNLTEVGLAHLTPLVTLQHLELSKCHNLTDAGLAHLTSLVALQHLNLSICKKITD 424
Query: 243 DGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC 300
G + + +L+ L+L G +++TD L HL L L+ L+L C + D GLV+L L
Sbjct: 425 VGLAHLTPLVALQHLDLSGCDKLTDVGLAHLTTLVALQHLDLTCCVNLTDAGLVHLKPLM 484
Query: 301 NLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFT 334
L+ L LS T + +GL H LT S+NL +
Sbjct: 485 ALQHLNLSYCTNLTDAGLAHFKNLTT--SLNLKLS 517
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 131/245 (53%), Gaps = 10/245 (4%)
Query: 246 EKFSKIGSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
+K K S ++ L F+E + D L+ LK NL+ L L C + D GL +L L
Sbjct: 176 KKILKFFSNEIEALNFSENTYLIDAHLLTLKNCKNLKVLYLQECHNLTDAGLSHLAPLVT 235
Query: 302 LKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-R 358
L+ L LS +++ +GL HL+ L L+ ++LS ++D L L L++L+ LNL
Sbjct: 236 LQHLNLSYCSKLTDAGLAHLTSLVTLQHLDLSKCYNLTDAGLTHLTPLAALQHLNLSYCS 295
Query: 359 QITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHI 416
++TD GLA LTSL L HLDL + +TD G A+L L+ L + LTD G+ H+
Sbjct: 296 KLTDAGLAHLTSLVTLQHLDLTWCVNLTDVGLAHLTPLAALQHLNLSYCIKLTDVGLAHL 355
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLT 475
L +L L+L+ NLT+ L ++ L L L +S +T AGL HL L L+ L
Sbjct: 356 TSLVALQHLDLTWCVNLTEVGLAHLTPLVTLQHLELSKCHNLTDAGLAHLTSLVALQHLN 415
Query: 476 LESCK 480
L CK
Sbjct: 416 LSICK 420
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 58 SLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DLSG D +TD GL HL LQ LD C+ ++D GL HL+ L L L+
Sbjct: 435 ALQHLDLSGCDKLTDVGLAHLTTLVALQHLDLTCCVNLTDAGLVHLKPLMALQHLNLSYC 494
Query: 117 NAITAQGMKAFAGLINLVKLDLER 140
+T G+ F L + L L R
Sbjct: 495 TNLTDAGLAHFKNLTTSLNLKLSR 518
>gi|46447142|ref|YP_008507.1| hypothetical protein pc1508 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400783|emb|CAF24232.1| hypothetical protein pc1508 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 657
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 139/395 (35%), Positives = 197/395 (49%), Gaps = 38/395 (9%)
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER------CTRIHGGLVNLKGL 154
HL L N + A + F +IN D+E L+ LK
Sbjct: 274 HLNALKNYLEYTVVSTLLNQAPDLTKFEKIINYFANDIEELNFSRNAYLTDAHLLVLKNC 333
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEG 213
L++L ++ C +TD+ + LS L L+ L + C +TD+G+AYL L+ L LNL
Sbjct: 334 KNLKALYLEGCKNLTDTGLAHLSPLVALQHLSLFDCENLTDAGLAYLSPLENLQHLNLSH 393
Query: 214 CP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLV 270
T A L LS L +L +LNL C+ L+ DG S + +L+ L L F +TD L
Sbjct: 394 SKHFTNAGLAHLSPLAALQHLNLFGCENLTGDGLTHLSSLVALQHLGLNFCRNLTDAGLA 453
Query: 271 HLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLES 328
HL L L+ L+L+ C + D GL +LT L L+ L L + + +GL HLS L NL+
Sbjct: 454 HLAPLVTLQHLDLNFCDNLTDTGLAHLTSLVTLQHLNLGWCRNLTDAGLVHLSPLENLQH 513
Query: 329 INLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITD 386
++L+ ++D L L L +L+ LNL R++TD GLA LT L L +LDLFG R
Sbjct: 514 LDLNDCYNLTDAGLAHLTPLVALQHLNLRRCRKLTDAGLAHLTPLVALQYLDLFGCR--- 570
Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 446
LTDAG+ H+ L +L L L NLTD+ L ++ L
Sbjct: 571 --------------------NLTDAGLTHLTPLIALQHLYLGLCNNLTDRGLAHLTPLAV 610
Query: 447 LVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 480
L L++S S +T+AGLRHL PL L+ L L C+
Sbjct: 611 LQRLDLSFCSNLTNAGLRHLSPLVALKYLDLSGCE 645
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 127/341 (37%), Positives = 190/341 (55%), Gaps = 11/341 (3%)
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKW 164
+++ L+F RN +T + NL L LE C + GL +L L+ L+ L++
Sbjct: 309 NDIEELNFSRNAYLTDAHLLVLKNCKNLKALYLEGCKNLTDTGLAHLSPLVALQHLSLFD 368
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCP-VTAACLD 222
C +TD+ + LS L NL+ L +S SK T++G+A+L L L LNL GC +T L
Sbjct: 369 CENLTDAGLAYLSPLENLQHLNLSHSKHFTNAGLAHLSPLAALQHLNLFGCENLTGDGLT 428
Query: 223 SLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLES 280
LS+L +L +L LN C+ L+D G + + +L+ L+L F + +TD L HL L L+
Sbjct: 429 HLSSLVALQHLGLNFCRNLTDAGLAHLAPLVTLQHLDLNFCDNLTDTGLAHLTSLVTLQH 488
Query: 281 LNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGIS 337
LNL C + D GLV+L+ L NL+ L+L+D + +GL HL+ L L+ +NL ++
Sbjct: 489 LNLGWCRNLTDAGLVHLSPLENLQHLDLNDCYNLTDAGLAHLTPLVALQHLNLRRCRKLT 548
Query: 338 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNF 395
D L L L +L+ L+L R +TD GL LT L L HL L +TD G A+L
Sbjct: 549 DAGLAHLTPLVALQYLDLFGCRNLTDAGLTHLTPLIALQHLYLGLCNNLTDRGLAHLTPL 608
Query: 396 KNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
L+ L++ LT+AG++H+ L +L L+LS NLTD
Sbjct: 609 AVLQRLDLSFCSNLTNAGLRHLSPLVALKYLDLSGCENLTD 649
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 126/400 (31%), Positives = 201/400 (50%), Gaps = 36/400 (9%)
Query: 24 SLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLS-GSDVTDSGLIHLKDCSN 82
+L+ + + + L Q P + K+ +I + + ++ S + +TD+ L+ LK+C N
Sbjct: 277 ALKNYLEYTVVSTLLNQAPDLT-KFEKIINYFANDIEELNFSRNAYLTDAHLLVLKNCKN 335
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L++L C ++D GL HL L L LS +T G+ + L NL L+L
Sbjct: 336 LKALYLEGCKNLTDTGLAHLSPLVALQHLSLFDCENLTDAGLAYLSPLENLQHLNLSHSK 395
Query: 143 RI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL 200
+ GL +L L L+ LN+ C +T + LS L L+ L ++ C +TD+G+A+
Sbjct: 396 HFTNAGLAHLSPLAALQHLNLFGCENLTGDGLTHLSSLVALQHLGLNFCRNLTDAGLAH- 454
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL 259
L+ L +L +L+LN C L+D G + + +L+ LNL
Sbjct: 455 -----------------------LAPLVTLQHLDLNFCDNLTDTGLAHLTSLVTLQHLNL 491
Query: 260 GF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSG 316
G+ +TD LVHL L NL+ L+L+ C + D GL +LT L L+ L L ++ +G
Sbjct: 492 GWCRNLTDAGLVHLSPLENLQHLDLNDCYNLTDAGLAHLTPLVALQHLNLRRCRKLTDAG 551
Query: 317 LRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGL 374
L HL+ L L+ ++L ++D L L L +L+ L L +TD GLA LT L L
Sbjct: 552 LAHLTPLVALQYLDLFGCRNLTDAGLTHLTPLIALQHLYLGLCNNLTDRGLAHLTPLAVL 611
Query: 375 THLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAG 412
LDL F + +T++G +L L+ L++ G LTDAG
Sbjct: 612 QRLDLSFCSNLTNAGLRHLSPLVALKYLDLSGCENLTDAG 651
>gi|325110089|ref|YP_004271157.1| hypothetical protein Plabr_3538 [Planctomyces brasiliensis DSM
5305]
gi|324970357|gb|ADY61135.1| leucine-rich repeat-containing protein [Planctomyces brasiliensis
DSM 5305]
Length = 451
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 109/355 (30%), Positives = 187/355 (52%), Gaps = 4/355 (1%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
N+ ++DF ++ +D L HL G + L + T+ GM GL +L L LE+
Sbjct: 84 NVTAVDFR-SVEAADDALTHLTGTPQVQEL-YLFGPGFTSAGMSDLQGLNDLRLLSLEKT 141
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
GLV + + L +L ++ + ++D +K L GL L+ L + + ++D G+ L
Sbjct: 142 LIDDAGLVEIGRIPSLVALRLRQTD-VSDEGLKALGGLDKLRELDLRFTNISDEGLPALA 200
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
L ++ + L+ ++ + +L+A+ ++ L LN L++ E + L L +
Sbjct: 201 ELDSISTVKLDRTKISDEGVKTLAAIPTIRGLGLNLTNLTNTALEALKERSELVTLEMDD 260
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
+I D +VHL+G++NL++L+L +GDEG + L +LK L + DT + +G HL+
Sbjct: 261 TQIDDAGIVHLEGMSNLQNLSLRRDDVGDEGFEIIGKLKSLKRLSIRDTVISDAGCAHLA 320
Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
L NLE+++L+ T I D + L GL +LK+L L +IT G A L +LT L L+L
Sbjct: 321 NLENLETLDLNETFIGDEGVAHLGGLKNLKTLELWFTRITPQGTAPLQNLTALRELNLED 380
Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436
RI DS L LR+L + +TD G+ H+ L +L ++L N ++D+
Sbjct: 381 TRIDDSALEPLAGLTELRTLNLKLTPITDEGLVHLHGLKNLEFVHLG-NTQVSDE 434
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 111/337 (32%), Positives = 176/337 (52%), Gaps = 25/337 (7%)
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
D + L+G ++ L + T +G++ L+GL L LL+LE + A L + + S
Sbjct: 97 DDALTHLTGTPQVQELYLFGPGFTSAGMSDLQGLNDLRLLSLEKTLIDDAGLVEIGRIPS 156
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L L L + +SD+G + + L+ L+L F I+DE L L L ++ ++ LD I
Sbjct: 157 LVALRLRQTDVSDEGLKALGGLDKLRELDLRFTNISDEGLPALAELDSISTVKLDRTKIS 216
Query: 290 DEGL-------------VNLTGLCN-----------LKCLELSDTQVGSSGLRHLSGLTN 325
DEG+ +NLT L N L LE+ DTQ+ +G+ HL G++N
Sbjct: 217 DEGVKTLAAIPTIRGLGLNLTNLTNTALEALKERSELVTLEMDDTQIDDAGIVHLEGMSN 276
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L++++L + D + L SLK L++ I+D G A L +L L LDL I
Sbjct: 277 LQNLSLRRDDVGDEGFEIIGKLKSLKRLSIRDTVISDAGCAHLANLENLETLDLNETFIG 336
Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 445
D G A+L KNL++LE+ +T G +++L++L LNL ++ + D LE ++GLT
Sbjct: 337 DEGVAHLGGLKNLKTLELWFTRITPQGTAPLQNLTALRELNL-EDTRIDDSALEPLAGLT 395
Query: 446 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
L +LN+ + IT GL HL LKNL + L + +V+
Sbjct: 396 ELRTLNLKLTPITDEGLVHLHGLKNLEFVHLGNTQVS 432
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 113/363 (31%), Positives = 178/363 (49%), Gaps = 26/363 (7%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
+QG+ + +VD + D L HL +Q L + F + G+ L+GL++L LS
Sbjct: 81 AQGN-VTAVDFRSVEAADDALTHLTGTPQVQEL-YLFGPGFTSAGMSDLQGLNDLRLLSL 138
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC------ 167
+ I G+ + +LV L L + GL L GL KL L++++ N
Sbjct: 139 EKT-LIDDAGLVEIGRIPSLVALRLRQTDVSDEGLKALGGLDKLRELDLRFTNISDEGLP 197
Query: 168 -----------------ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
I+D +K L+ + ++ L ++ + +T++ + LK +L L
Sbjct: 198 ALAELDSISTVKLDRTKISDEGVKTLAAIPTIRGLGLNLTNLTNTALEALKERSELVTLE 257
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
++ + A + L + +L L+L R + D+G E K+ SLK L++ I+D
Sbjct: 258 MDDTQIDDAGIVHLEGMSNLQNLSLRRDDVGDEGFEIIGKLKSLKRLSIRDTVISDAGCA 317
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
HL L NLE+L+L+ IGDEG+ +L GL NLK LEL T++ G L LT L +N
Sbjct: 318 HLANLENLETLDLNETFIGDEGVAHLGGLKNLKTLELWFTRITPQGTAPLQNLTALRELN 377
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
L T I D +L LAGL+ L++LNL ITD GL L L L + L +++D G
Sbjct: 378 LEDTRIDDSALEPLAGLTELRTLNLKLTPITDEGLVHLHGLKNLEFVHLGNTQVSDEGTD 437
Query: 391 YLR 393
L+
Sbjct: 438 ALK 440
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 147/321 (45%), Gaps = 30/321 (9%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
N+ ++ + D + +L G ++ L L G T+A + L L L L+L + +
Sbjct: 84 NVTAVDFRSVEAADDALTHLTGTPQVQELYLFGPGFTSAGMSDLQGLNDLRLLSLEKTLI 143
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D G + +I SL L L +++DE L L GL L L+L I DEGL L L
Sbjct: 144 DDAGLVEIGRIPSLVALRLRQTDVSDEGLKALGGLDKLRELDLRFTNISDEGLPALAELD 203
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
++ ++L T++ G++ L+ + + + L+ T +++ +L L S L +L +D QI
Sbjct: 204 SISTVKLDRTKISDEGVKTLAAIPTIRGLGLNLTNLTNTALEALKERSELVTLEMDDTQI 263
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
D G+ L ++ L +L L + D G + K+L+ L I ++DAG H+ +L
Sbjct: 264 DDAGIVHLEGMSNLQNLSLRRDDVGDEGFEIIGKLKSLKRLSIRDTVISDAGCAHLANLE 323
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
+L L+L++ I G+ HL LKNL++L L +
Sbjct: 324 NLETLDLNETF-------------------------IGDEGVAHLGGLKNLKTLELWFTR 358
Query: 481 VTANDIKRLQSRDLPNLVSFR 501
+T LQ NL + R
Sbjct: 359 ITPQGTAPLQ-----NLTALR 374
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 139/275 (50%), Gaps = 11/275 (4%)
Query: 212 EGCPVT-AACLDSLSALGSLFYLN---------LNRCQLSDDGCEKFSKIGSLKVLNLGF 261
E P +A +++L A G++ N + +DD + ++ L L
Sbjct: 57 ESTPADDSAAVEALEAAGAILKTNAQGNVTAVDFRSVEAADDALTHLTGTPQVQELYLFG 116
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
T + L+GL +L L+L+ I D GLV + + +L L L T V GL+ L
Sbjct: 117 PGFTSAGMSDLQGLNDLRLLSLEKTLIDDAGLVEIGRIPSLVALRLRQTDVSDEGLKALG 176
Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
GL L ++L FT ISD L LA L S+ ++ LD +I+D G+ L ++ + L L
Sbjct: 177 GLDKLRELDLRFTNISDEGLPALAELDSISTVKLDRTKISDEGVKTLAAIPTIRGLGLNL 236
Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
+T++ L+ L +LE+ + DAG+ H++ +S+L L+L ++ ++ D+ E+I
Sbjct: 237 TNLTNTALEALKERSELVTLEMDDTQIDDAGIVHLEGMSNLQNLSLRRD-DVGDEGFEII 295
Query: 442 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
L L L++ ++ I+ AG HL L+NL +L L
Sbjct: 296 GKLKSLKRLSIRDTVISDAGCAHLANLENLETLDL 330
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 94/193 (48%), Gaps = 25/193 (12%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSL--------DFNFCI---------------Q 93
S L+++++ + + D+G++HL+ SNLQ+L D F I
Sbjct: 251 SELVTLEMDDTQIDDAGIVHLEGMSNLQNLSLRRDDVGDEGFEIIGKLKSLKRLSIRDTV 310
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
ISD G HL L NL +L I +G+ GL NL L+L G L+
Sbjct: 311 ISDAGCAHLANLENLETLDLNET-FIGDEGVAHLGGLKNLKTLELWFTRITPQGTAPLQN 369
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L L LN++ I DS ++PL+GLT L++L + + +TD G+ +L GL+ L ++L
Sbjct: 370 LTALRELNLEDTR-IDDSALEPLAGLTELRTLNLKLTPITDEGLVHLHGLKNLEFVHLGN 428
Query: 214 CPVTAACLDSLSA 226
V+ D+L A
Sbjct: 429 TQVSDEGTDALKA 441
>gi|168698219|ref|ZP_02730496.1| hypothetical protein GobsU_01767 [Gemmata obscuriglobus UQM 2246]
Length = 380
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 167/299 (55%), Gaps = 1/299 (0%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+TD ++K L L +L S+ +S + VT++G+ L + LT L+L +T A L L+ L
Sbjct: 60 VTDEELKELLPLKSLTSIDLSHTGVTNAGLKVLVAFKSLTTLSLHDTGITDAGLKELAPL 119
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
+L NL+ +++D G ++ + I +L L+L EITD L L + +L +L+L
Sbjct: 120 KNLTAFNLSNTKVTDTGLKELTAIRNLTALHLRKTEITDAGLKSLPPMKDLTTLDLSDTK 179
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
+ D GL L L L L L +T+V +GL+ L+ NL + L T ++D L++LA L
Sbjct: 180 VTDAGLKALAPLERLTNLYLYNTEVTDTGLKELAPSKNLAVLLLYNTKVTDAGLKELAPL 239
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
SL L L ++TD GL L L LT L+L+G ++TD+G L F+NL L++ G
Sbjct: 240 KSLSVLVLGETEVTDAGLKELAPLKNLTALNLYGTKVTDAGVKELAPFQNLTLLDLSGTN 299
Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 466
+TDAG+K + +L L LS +TD L+ ++ L L L + +++ T AG++ +
Sbjct: 300 VTDAGIKELARFKNLAHLELSSTA-VTDVGLKELASLKKLTKLFLISTKTTFAGIKEFQ 357
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 108/300 (36%), Positives = 163/300 (54%), Gaps = 1/300 (0%)
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
+VTD + L L+ LT ++L VT A L L A SL L+L+ ++D G ++ +
Sbjct: 59 RVTDEELKELLPLKSLTSIDLSHTGVTNAGLKVLVAFKSLTTLSLHDTGITDAGLKELAP 118
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+ +L NL ++TD L L + NL +L+L I D GL +L + +L L+LSDT
Sbjct: 119 LKNLTAFNLSNTKVTDTGLKELTAIRNLTALHLRKTEITDAGLKSLPPMKDLTTLDLSDT 178
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
+V +GL+ L+ L L ++ L T ++D L++LA +L L L ++TD GL L
Sbjct: 179 KVTDAGLKALAPLERLTNLYLYNTEVTDTGLKELAPSKNLAVLLLYNTKVTDAGLKELAP 238
Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
L L+ L L +TD+G L KNL +L + G +TDAGVK + +LTLL+LS
Sbjct: 239 LKSLSVLVLGETEVTDAGLKELAPLKNLTALNLYGTKVTDAGVKELAPFQNLTLLDLS-G 297
Query: 431 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 490
N+TD ++ ++ L L +S++ +T GL+ L LK L L L S K T IK Q
Sbjct: 298 TNVTDAGIKELARFKNLAHLELSSTAVTDVGLKELASLKKLTKLFLISTKTTFAGIKEFQ 357
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 96/280 (34%), Positives = 146/280 (52%), Gaps = 1/280 (0%)
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
+G VT L L L SL ++L+ +++ G + SL L+L ITD L
Sbjct: 56 QGHRVTDEELKELLPLKSLTSIDLSHTGVTNAGLKVLVAFKSLTTLSLHDTGITDAGLKE 115
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
L L NL + NL + + D GL LT + NL L L T++ +GL+ L + +L +++L
Sbjct: 116 LAPLKNLTAFNLSNTKVTDTGLKELTAIRNLTALHLRKTEITDAGLKSLPPMKDLTTLDL 175
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
S T ++D L+ LA L L +L L ++TDTGL L L L L+ ++TD+G
Sbjct: 176 SDTKVTDAGLKALAPLERLTNLYLYNTEVTDTGLKELAPSKNLAVLLLYNTKVTDAGLKE 235
Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
L K+L L + +TDAG+K + L +LT LNL +TD ++ ++ L L+
Sbjct: 236 LAPLKSLSVLVLGETEVTDAGLKELAPLKNLTALNL-YGTKVTDAGVKELAPFQNLTLLD 294
Query: 452 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 491
+S + +T AG++ L KNL L L S VT +K L S
Sbjct: 295 LSGTNVTDAGIKELARFKNLAHLELSSTAVTDVGLKELAS 334
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 154/308 (50%), Gaps = 27/308 (8%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL S+DLS + VT++GL L +L +L + I+D GL+ L L NLT+ + N
Sbjct: 73 SLTSIDLSHTGVTNAGLKVLVAFKSLTTLSLHDT-GITDAGLKELAPLKNLTAFNL-SNT 130
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+T G+K + NL L L + ITD+ +K L
Sbjct: 131 KVTDTGLKELTAIRNLTALHLRKTE-------------------------ITDAGLKSLP 165
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
+ +L +L +S +KVTD+G+ L L++LT L L VT L L+ +L L L
Sbjct: 166 PMKDLTTLDLSDTKVTDAGLKALAPLERLTNLYLYNTEVTDTGLKELAPSKNLAVLLLYN 225
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+++D G ++ + + SL VL LG E+TD L L L NL +LNL + D G+ L
Sbjct: 226 TKVTDAGLKELAPLKSLSVLVLGETEVTDAGLKELAPLKNLTALNLYGTKVTDAGVKELA 285
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
NL L+LS T V +G++ L+ NL + LS T ++D L++LA L L L L +
Sbjct: 286 PFQNLTLLDLSGTNVTDAGIKELARFKNLAHLELSSTAVTDVGLKELASLKKLTKLFLIS 345
Query: 358 RQITDTGL 365
+ T G+
Sbjct: 346 TKTTFAGI 353
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 143/281 (50%), Gaps = 6/281 (2%)
Query: 41 YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGL 99
+ GV + + V+ + SL ++ L + +TD+GL L NL + FN +++D GL
Sbjct: 81 HTGVTNAGLKVLVA-FKSLTTLSLHDTGITDAGLKELAPLKNLTA--FNLSNTKVTDTGL 137
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
+ L + NLT+L R+ IT G+K+ + +L LDL GL L L +L +
Sbjct: 138 KELTAIRNLTALHLRKTE-ITDAGLKSLPPMKDLTTLDLSDTKVTDAGLKALAPLERLTN 196
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L + + +TD+ +K L+ NL L + +KVTD+G+ L L+ L++L L VT A
Sbjct: 197 LYL-YNTEVTDTGLKELAPSKNLAVLLLYNTKVTDAGLKELAPLKSLSVLVLGETEVTDA 255
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
L L+ L +L LNL +++D G ++ + +L +L+L +TD + L NL
Sbjct: 256 GLKELAPLKNLTALNLYGTKVTDAGVKELAPFQNLTLLDLSGTNVTDAGIKELARFKNLA 315
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
L L S + D GL L L L L L T+ +G++
Sbjct: 316 HLELSSTAVTDVGLKELASLKKLTKLFLISTKTTFAGIKEF 356
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 108/240 (45%), Gaps = 18/240 (7%)
Query: 11 FNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT 70
EL R LT + L R + D L P + D L ++DLS + VT
Sbjct: 137 LKELTAIRNLTALHL---RKTEITDAGLKSLPPMKD------------LTTLDLSDTKVT 181
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D+GL L L +L + + +++D GL+ L NL L N +T G+K A L
Sbjct: 182 DAGLKALAPLERLTNL-YLYNTEVTDTGLKELAPSKNLAVL-LLYNTKVTDAGLKELAPL 239
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
+L L L GL L L L +LN+ + +TD+ +K L+ NL L +S +
Sbjct: 240 KSLSVLVLGETEVTDAGLKELAPLKNLTALNL-YGTKVTDAGVKELAPFQNLTLLDLSGT 298
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
VTD+GI L + L L L VT L L++L L L L + + G ++F K
Sbjct: 299 NVTDAGIKELARFKNLAHLELSSTAVTDVGLKELASLKKLTKLFLISTKTTFAGIKEFQK 358
>gi|224007994|ref|XP_002292956.1| hypothetical protein THAPSDRAFT_16210 [Thalassiosira pseudonana
CCMP1335]
gi|220971082|gb|EED89417.1| hypothetical protein THAPSDRAFT_16210 [Thalassiosira pseudonana
CCMP1335]
Length = 301
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 88/234 (37%), Positives = 138/234 (58%), Gaps = 4/234 (1%)
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG---LCNLKCLE 306
KI +LK L L ++ + D L H + L LE LNLDSC +GD + +L + N+ L+
Sbjct: 69 KINNLKSLELCYSGVQDNHLAHFRSLPMLEELNLDSCHLGDWSIAHLADNNVIPNITSLD 128
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
L+D + GL ++ ++ ++L + ++ LR L+ ++ L+ LNLD+R+I D GL
Sbjct: 129 LADADISDFGLSKIAQFKQMKRLSLFYCNVTSAGLRHLSSMTKLEVLNLDSREIGDEGLK 188
Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
L L L LD+F R+TD G +R K L+SLE+CGGG+ D G H+ + +LT LN
Sbjct: 189 HLRDLP-LQSLDVFSGRVTDLGYGCIRLIKTLQSLELCGGGVGDIGCTHLATIPNLTSLN 247
Query: 427 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
LSQN +T++ ++ L+ L +LN+SN+ +T LR+ L L+SL L C+
Sbjct: 248 LSQNERITNRGAASLAALSNLKALNLSNTAVTPDALRYFSDLSKLKSLALYGCR 301
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 119/212 (56%), Gaps = 6/212 (2%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSG---LTNLKSLQISCSKVTDSGIAYLKGLQ 204
L + + L LE LN+ C+ + D + L+ + N+ SL ++ + ++D G++ + +
Sbjct: 88 LAHFRSLPMLEELNLDSCH-LGDWSIAHLADNNVIPNITSLDLADADISDFGLSKIAQFK 146
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
++ L+L C VT+A L LS++ L LNL+ ++ D+G + + L+ L++ +
Sbjct: 147 QMKRLSLFYCNVTSAGLRHLSSMTKLEVLNLDSREIGDEGLKHLRDL-PLQSLDVFSGRV 205
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHLSGL 323
TD ++ + L+SL L G+GD G +L + NL L LS + ++ + G L+ L
Sbjct: 206 TDLGYGCIRLIKTLQSLELCGGGVGDIGCTHLATIPNLTSLNLSQNERITNRGAASLAAL 265
Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
+NL+++NLS T ++ +LR + LS LKSL L
Sbjct: 266 SNLKALNLSNTAVTPDALRYFSDLSKLKSLAL 297
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 23/176 (13%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF------- 113
S+DL+ +D++D GL + ++ L +C ++ GL HL ++ L L+
Sbjct: 126 SLDLADADISDFGLSKIAQFKQMKRLSLFYC-NVTSAGLRHLSSMTKLEVLNLDSREIGD 184
Query: 114 ---RRNNAITAQGMKAFAG--------LINLVKL--DLERCTRIHG--GLVNLKGLMKLE 158
+ + Q + F+G I L+K LE C G G +L + L
Sbjct: 185 EGLKHLRDLPLQSLDVFSGRVTDLGYGCIRLIKTLQSLELCGGGVGDIGCTHLATIPNLT 244
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
SLN+ IT+ L+ L+NLK+L +S + VT + Y L KL L L GC
Sbjct: 245 SLNLSQNERITNRGAASLAALSNLKALNLSNTAVTPDALRYFSDLSKLKSLALYGC 300
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD---LSSLTLLNL 427
+ L L+L + + D+ A+ R+ L L + L D + H+ D + ++T L+L
Sbjct: 70 INNLKSLELCYSGVQDNHLAHFRSLPMLEELNLDSCHLGDWSIAHLADNNVIPNITSLDL 129
Query: 428 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 487
+ + +++D L I+ + L++ +TSAGLRHL + L L L+S ++ +K
Sbjct: 130 A-DADISDFGLSKIAQFKQMKRLSLFYCNVTSAGLRHLSSMTKLEVLNLDSREIGDEGLK 188
Query: 488 RLQSRDLP 495
L RDLP
Sbjct: 189 HL--RDLP 194
>gi|383455271|ref|YP_005369260.1| hypothetical protein COCOR_03284 [Corallococcus coralloides DSM
2259]
gi|380733131|gb|AFE09133.1| leucine-rich repeat-containing protein [Corallococcus coralloides
DSM 2259]
Length = 614
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 140/425 (32%), Positives = 213/425 (50%), Gaps = 5/425 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+S++S+ LS + + D L L + + LQ+L + +++D GL L+G+ +L L
Sbjct: 129 TSVVSLHLSETALGDEHLAALANATRLQALHLD-GTRVTDAGLASLQGMPHLAVLRLD-A 186
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A++ +G+ A L L +L L + GL L +LE L++ + D+ + L
Sbjct: 187 TAVSDRGLALLASLTTLRRLSLSGTSVSPRGLGLLAAQTELEWLDLS-DTTVDDTVLASL 245
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
G L++L +S + VT++G+ L+ + L L L V+ A L L AL L L+L
Sbjct: 246 PG-ERLRTLVMSGTHVTNAGLGALRRMPALRWLGLARTSVSDAGLAHLGALRMLDALHLG 304
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
++D G +++ +L+VL L I + HL GLT LE L+LD IG+ L +L
Sbjct: 305 STGVTDAGLIHLARLPALRVLVLSKTRIRGPGVRHLAGLTQLEVLHLDDTSIGNAALRHL 364
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
GL +L+ LELS T V SGL LSGL LES+ LS + D SL L L L L+L
Sbjct: 365 QGLQHLRDLELSRTAVTGSGLPALSGLQALESLGLSGLALEDASLAALEPLERLSRLDLS 424
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
A +I L L S L HLDL D A L+ F L+SL LTD G+ +
Sbjct: 425 ATRIGPEALKQLGSRMVLRHLDLSRTDFNDGWVATLQTFTQLQSLRAIRTILTDLGLGQL 484
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
+L L L +S N ++ L + L LV L++ + +T G R L + L L+L
Sbjct: 485 SELRELESLQVSGN-PISGSGLVPLQKLPHLVKLDLGGTWMTDDGARLLAGFEKLSWLSL 543
Query: 477 ESCKV 481
++
Sbjct: 544 AGTRI 548
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 116/397 (29%), Positives = 187/397 (47%), Gaps = 7/397 (1%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LSG+ V+ GL L + L+ LD + + D L L G L +L + +T G
Sbjct: 208 LSGTSVSPRGLGLLAAQTELEWLDLSDTT-VDDTVLASLPG-ERLRTLVMSGTH-VTNAG 264
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ A + L L L R + GL +L L L++L++ +TD+ + L+ L L+
Sbjct: 265 LGALRRMPALRWLGLARTSVSDAGLAHLGALRMLDALHLG-STGVTDAGLIHLARLPALR 323
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L +S +++ G+ +L GL +L +L+L+ + A L L L L L L+R ++
Sbjct: 324 VLVLSKTRIRGPGVRHLAGLTQLEVLHLDDTSIGNAALRHLQGLQHLRDLELSRTAVTGS 383
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
G S + +L+ L L + D L L+ L L L+L + IG E L L L+
Sbjct: 384 GLPALSGLQALESLGLSGLALEDASLAALEPLERLSRLDLSATRIGPEALKQLGSRMVLR 443
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
L+LS T + L T L+S+ T ++D L +L+ L L+SL + I+ +
Sbjct: 444 HLDLSRTDFNDGWVATLQTFTQLQSLRAIRTILTDLGLGQLSELRELESLQVSGNPISGS 503
Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
GL L L L LDL G +TD GA L F+ L L + G + D + H+ S LT
Sbjct: 504 GLVPLQKLPHLVKLDLGGTWMTDDGARLLAGFEKLSWLSLAGTRIGDESLVHLPG-SLLT 562
Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
L L +TD + + L L +++ + ++ A
Sbjct: 563 LYLL--RTKVTDAGMPALHRLPLLREIDLRETAVSEA 597
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 99/313 (31%), Positives = 153/313 (48%), Gaps = 2/313 (0%)
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
T++ SL +S + + D +A L +L L+L+G VT A L SL + L L L+
Sbjct: 129 TSVVSLHLSETALGDEHLAALANATRLQALHLDGTRVTDAGLASLQGMPHLAVLRLDATA 188
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
+SD G + + +L+ L+L ++ L L T LE L+L + D L +L G
Sbjct: 189 VSDRGLALLASLTTLRRLSLSGTSVSPRGLGLLAAQTELEWLDLSDTTVDDTVLASLPG- 247
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
L+ L +S T V ++GL L + L + L+ T +SD L L L L +L+L +
Sbjct: 248 ERLRTLVMSGTHVTNAGLGALRRMPALRWLGLARTSVSDAGLAHLGALRMLDALHLGSTG 307
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
+TD GL L L L L L RI G +L L L + + +A ++H++ L
Sbjct: 308 VTDAGLIHLARLPALRVLVLSKTRIRGPGVRHLAGLTQLEVLHLDDTSIGNAALRHLQGL 367
Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 479
L L LS+ +T L +SGL L SL +S + A L L+PL+ L L L +
Sbjct: 368 QHLRDLELSRTA-VTGSGLPALSGLQALESLGLSGLALEDASLAALEPLERLSRLDLSAT 426
Query: 480 KVTANDIKRLQSR 492
++ +K+L SR
Sbjct: 427 RIGPEALKQLGSR 439
>gi|397646482|gb|EJK77289.1| hypothetical protein THAOC_00890 [Thalassiosira oceanica]
Length = 702
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 129/389 (33%), Positives = 203/389 (52%), Gaps = 31/389 (7%)
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+ IT +GM AF+ L + L C R+ +VN+ L SLN+ C C+TD ++
Sbjct: 293 HGITGKGMLAFSRSPRLHTISLANCRRLTDEAVVNISHCTSLTSLNVGGCRCLTDRSLEA 352
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+SGL +L+ L +S C +TD G+ +L L L L+L A ++ +L L
Sbjct: 353 MSGLLDLRRLDLSQCDLITDDGLIFLGELDLLEELSLGNKSCGMAIQQRNRSI-ALKTLR 411
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH-LKGLTNLESLNLDSC-GIGDEG 292
L RC +++DG + ++ SL+ L++ ++ L L+ LTNL SL+ C GI
Sbjct: 412 LARCAITNDGLDYLEQLQSLEDLDINGCSLSSTALGESLEKLTNLNSLDASHCPGI---- 467
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
L L+ L L+DTQ+ + + ++ L L S++L + +S LR LA L L S
Sbjct: 468 ------LPGLEVLNLADTQISDNAMSKVAKLAGLRSLSLFYCNVSSRGLRHLASLEKLDS 521
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
LNLD+R I D G R+TD G +Y+ K L +L++ GGG+ D G
Sbjct: 522 LNLDSRDIGDEGRPN---------------RVTDLGCSYIAKIKTLTTLQLAGGGVGDLG 566
Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 472
HI + +L LNLSQN ++T++ ++ L+ L +LN+SN+R+TS L+ L L+
Sbjct: 567 CAHIATIDALESLNLSQNESITNRGAASLAALSNLRALNLSNTRVTSNALKFFHGLSKLQ 626
Query: 473 SLTLESCKVTANDIKRLQSRDLPNLVSFR 501
SL L C + + I+ LQ ++P L R
Sbjct: 627 SLALYGCIMEDSPIESLQD-EVPTLRCLR 654
Score = 38.5 bits (88), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGS 57
LP+D+ +I L L ++ A +C L LCL GVND+++ + S GS
Sbjct: 47 LPQDVVDRIVKSLTAHAALNCTTMRALSNCELGTLCLADARGVNDEFLMALCSSGS 102
>gi|149174696|ref|ZP_01853321.1| hypothetical protein PM8797T_26210 [Planctomyces maris DSM 8797]
gi|148846390|gb|EDL60728.1| hypothetical protein PM8797T_26210 [Planctomyces maris DSM 8797]
Length = 460
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 110/356 (30%), Positives = 184/356 (51%), Gaps = 26/356 (7%)
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L++K N D+D+K L+GL +L+ L + TD + KL L+LE +
Sbjct: 98 LDLKGTNA-QDADLKHLAGLPSLERLILWGPNFTDVSTEEIGKKNKLWFLSLESTAIGDE 156
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNL 278
+ +LS L L L+L +++D + + LK L+L FN EI DE + H+KG+ NL
Sbjct: 157 GVKNLSDLQGLQVLSLRATNITNDALKVVAAFPELKDLDLRFNKEINDEGMPHIKGMKNL 216
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLK-----------------------CLELSDTQVGSS 315
+ L + + + DEG+ ++ L NL+ LEL DT++
Sbjct: 217 KVLKVQATQVTDEGMKDIAALPNLQRLNTWGRNISDETLELLKDKNLVSLELDDTEISDE 276
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
G+++L +TN+ES++L + + + + + L++L+L +TD G+ L+ LT LT
Sbjct: 277 GMKYLKDMTNMESLHLRRDFVGNPGIENIQNMKKLQTLHLRDTVVTDEGMKYLSGLTDLT 336
Query: 376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
+LDL + I D G +++ K L L + G TD G+K I + L LNL + +TD
Sbjct: 337 YLDLDESMIGDQGLEQIKDLKKLTRLGLWGTETTDQGLKVISGFTELNRLNL-EGTPITD 395
Query: 436 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 491
L+ + L L LN+S + I+ GL+ L LKNL+ L L +VT + +K+ ++
Sbjct: 396 AGLKQLLPLKKLEYLNLSKTEISDEGLKTLAALKNLKELQLSFTQVTDDGVKQFEA 451
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 115/373 (30%), Positives = 183/373 (49%), Gaps = 29/373 (7%)
Query: 95 SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154
D L+HL GL +L L N T + L L LE G+ NL L
Sbjct: 106 QDADLKHLAGLPSLERLILWGPN-FTDVSTEEIGKKNKLWFLSLESTAIGDEGVKNLSDL 164
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEG 213
L+ L+++ N IT+ +K ++ LK L + +K + D G+ ++KG++ L +L ++
Sbjct: 165 QGLQVLSLRATN-ITNDALKVVAAFPELKDLDLRFNKEINDEGMPHIKGMKNLKVLKVQA 223
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
VT + ++AL +L LN +SD+ E K +L L L EI+DE + +LK
Sbjct: 224 TQVTDEGMKDIAALPNLQRLNTWGRNISDETLE-LLKDKNLVSLELDDTEISDEGMKYLK 282
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
+TN+ESL+L +G+ G+ N+ + L+ L L DT V G+++LSGLT+
Sbjct: 283 DMTNMESLHLRRDFVGNPGIENIQNMKKLQTLHLRDTVVTDEGMKYLSGLTD-------- 334
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
L L+LD I D GL + L LT L L+G TD G +
Sbjct: 335 ----------------LTYLDLDESMIGDQGLEQIKDLKKLTRLGLWGTETTDQGLKVIS 378
Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
F L L + G +TDAG+K + L L LNLS+ ++D+ L+ ++ L L L +S
Sbjct: 379 GFTELNRLNLEGTPITDAGLKQLLPLKKLEYLNLSK-TEISDEGLKTLAALKNLKELQLS 437
Query: 454 NSRITSAGLRHLK 466
+++T G++ +
Sbjct: 438 FTQVTDDGVKQFE 450
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 103/364 (28%), Positives = 183/364 (50%), Gaps = 3/364 (0%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S +L +DL G++ D+ L HL +L+ L + +D E + + L LS
Sbjct: 90 SDDGRVLILDLKGTNAQDADLKHLAGLPSLERLIL-WGPNFTDVSTEEIGKKNKLWFLSL 148
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+ AI +G+K + L L L L + L + +L+ L++++ I D M
Sbjct: 149 -ESTAIGDEGVKNLSDLQGLQVLSLRATNITNDALKVVAAFPELKDLDLRFNKEINDEGM 207
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+ G+ NLK L++ ++VTD G+ + L L LN G ++ L+ L +L L
Sbjct: 208 PHIKGMKNLKVLKVQATQVTDEGMKDIAALPNLQRLNTWGRNISDETLELLKD-KNLVSL 266
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
L+ ++SD+G + + +++ L+L + + + + +++ + L++L+L + DEG+
Sbjct: 267 ELDDTEISDEGMKYLKDMTNMESLHLRRDFVGNPGIENIQNMKKLQTLHLRDTVVTDEGM 326
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L+GL +L L+L ++ +G GL + L L + L T +D L+ ++G + L L
Sbjct: 327 KYLSGLTDLTYLDLDESMIGDQGLEQIKDLKKLTRLGLWGTETTDQGLKVISGFTELNRL 386
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
NL+ ITD GL L L L +L+L I+D G L KNL+ L++ +TD GV
Sbjct: 387 NLEGTPITDAGLKQLLPLKKLEYLNLSKTEISDEGLKTLAALKNLKELQLSFTQVTDDGV 446
Query: 414 KHIK 417
K +
Sbjct: 447 KQFE 450
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 151/294 (51%), Gaps = 9/294 (3%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
QG +LS L +++T+ L + L+ LD F +I+D G+ H++G+ NL L +
Sbjct: 165 QGLQVLS--LRATNITNDALKVVAAFPELKDLDLRFNKEINDEGMPHIKGMKNLKVLKVQ 222
Query: 115 RNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
+T +GMK A L NL +L+ + L+ K L+ LE + + I+D
Sbjct: 223 ATQ-VTDEGMKDIAALPNLQRLNTWGRNISDETLELLKDKNLVSLELDDTE----ISDEG 277
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
MK L +TN++SL + V + GI ++ ++KL L+L VT + LS L L Y
Sbjct: 278 MKYLKDMTNMESLHLRRDFVGNPGIENIQNMKKLQTLHLRDTVVTDEGMKYLSGLTDLTY 337
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L+L+ + D G E+ + L L L E TD+ L + G T L LNL+ I D G
Sbjct: 338 LDLDESMIGDQGLEQIKDLKKLTRLGLWGTETTDQGLKVISGFTELNRLNLEGTPITDAG 397
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
L L L L+ L LS T++ GL+ L+ L NL+ + LSFT ++D +++
Sbjct: 398 LKQLLPLKKLEYLNLSKTEISDEGLKTLAALKNLKELQLSFTQVTDDGVKQFEA 451
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 141/288 (48%), Gaps = 25/288 (8%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+S G + L+L D + + + SL+ L L TD + L L+L
Sbjct: 89 MSDDGRVLILDLKGTNAQDADLKHLAGLPSLERLILWGPNFTDVSTEEIGKKNKLWFLSL 148
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLR 342
+S IGDEG+ NL+ L L+ L L T + + L+ ++ L+ ++L F I+D +
Sbjct: 149 ESTAIGDEGVKNLSDLQGLQVLSLRATNITNDALKVVAAFPELKDLDLRFNKEINDEGMP 208
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
+ G+ +LK L + A Q+TD G+ + +L L L+ +G I+D L++ KNL SLE
Sbjct: 209 HIKGMKNLKVLKVQATQVTDEGMKDIAALPNLQRLNTWGRNISDETLELLKD-KNLVSLE 267
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLS------------QNCN-----------LTDKTLE 439
+ ++D G+K++KD++++ L+L QN +TD+ ++
Sbjct: 268 LDDTEISDEGMKYLKDMTNMESLHLRRDFVGNPGIENIQNMKKLQTLHLRDTVVTDEGMK 327
Query: 440 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 487
+SGLT L L++ S I GL +K LK L L L + T +K
Sbjct: 328 YLSGLTDLTYLDLDESMIGDQGLEQIKDLKKLTRLGLWGTETTDQGLK 375
>gi|46446626|ref|YP_007991.1| hypothetical protein pc0992 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400267|emb|CAF23716.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 583
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 136/391 (34%), Positives = 209/391 (53%), Gaps = 47/391 (12%)
Query: 47 KWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL 105
++ +I + + ++D S + +TD+ L+ LK+C NL+ L C+ I+D GL HL
Sbjct: 216 EFEKIINHFSNEIEALDFSNNAHLTDAHLLALKNCENLKVLHLEACLAITDDGLAHL--- 272
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKW 164
A L+ L LDL C + GL +L L L+ L+++
Sbjct: 273 ----------------------APLVALQHLDLSDCENLTDVGLAHLTPLTALQHLDLRG 310
Query: 165 CNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
C TD+ + L+ LT L+ L +S CS TD+G+A+L L L L+L GC +T A L
Sbjct: 311 C-YFTDAGLAHLTPLTALQHLNLSFCSNATDAGLAHLTPLTALQHLDLRGCYLTDAGLAH 369
Query: 224 LSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESL 281
L+ L L +L+L C+ L+D G + +L+ LNL + +TD L HL LT L+ L
Sbjct: 370 LTPLTGLQHLDLIGCKDLTDAGLAHLRPLTALQHLNLNWCRNLTDAGLAHLTPLTALQHL 429
Query: 282 NLDSCG-IGDEGLVNLTGLCNLK------CLELSDTQVGSSGLRHLSGLTNLESINLS-F 333
+L C I D+GL +LT L L+ C +L+D +GL HL+ LT L+ +NL+ +
Sbjct: 430 DLSFCSNITDDGLAHLTLLTTLQHLNLSGCYKLTD-----AGLAHLTLLTGLQHLNLNWY 484
Query: 334 TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAY 391
++D L L L+ L+ L L D + +TD GLA LT LT L HL+L G ++TD+G A+
Sbjct: 485 KNLTDAGLAHLTPLAGLQYLALTDCKNLTDAGLAHLTPLTALQHLNLSGCYKLTDAGLAH 544
Query: 392 LRNFKNLRSLEICG-GGLTDAGVKHIKDLSS 421
L + L+ L++ LTD G+ K L++
Sbjct: 545 LTSLTALQYLDLSYCMNLTDDGLDRFKTLAT 575
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 127/346 (36%), Positives = 192/346 (55%), Gaps = 10/346 (2%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E+L+ +TD+ + L NLK L + +C +TD G+A+L L L L+L C
Sbjct: 227 EIEALDFSNNAHLTDAHLLALKNCENLKVLHLEACLAITDDGLAHLAPLVALQHLDLSDC 286
Query: 215 P-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL 272
+T L L+ L +L +L+L C +D G + + +L+ LNL F + TD L HL
Sbjct: 287 ENLTDVGLAHLTPLTALQHLDLRGCYFTDAGLAHLTPLTALQHLNLSFCSNATDAGLAHL 346
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINL 331
LT L+ L+L C + D GL +LT L L+ L+L + + +GL HL LT L+ +NL
Sbjct: 347 TPLTALQHLDLRGCYLTDAGLAHLTPLTGLQHLDLIGCKDLTDAGLAHLRPLTALQHLNL 406
Query: 332 SF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFG-ARITDSG 388
++ ++D L L L++L+ L+L ITD GLA LT LT L HL+L G ++TD+G
Sbjct: 407 NWCRNLTDAGLAHLTPLTALQHLDLSFCSNITDDGLAHLTLLTTLQHLNLSGCYKLTDAG 466
Query: 389 AAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
A+L L+ L + LTDAG+ H+ L+ L L L+ NLTD L ++ LT L
Sbjct: 467 LAHLTLLTGLQHLNLNWYKNLTDAGLAHLTPLAGLQYLALTDCKNLTDAGLAHLTPLTAL 526
Query: 448 VSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQS 491
LN+S ++T AGL HL L L+ L L C +T + + R ++
Sbjct: 527 QHLNLSGCYKLTDAGLAHLTSLTALQYLDLSYCMNLTDDGLDRFKT 572
Score = 42.4 bits (98), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL + LQ L+ + C +++D GL HL L+ L L +T G+ F
Sbjct: 511 NLTDAGLAHLTPLTALQHLNLSGCYKLTDAGLAHLTSLTALQYLDLSYCMNLTDDGLDRF 570
Query: 128 AGLINLVKLDLER 140
L + L++ R
Sbjct: 571 KTLATSLNLEIIR 583
>gi|290997932|ref|XP_002681535.1| predicted protein [Naegleria gruberi]
gi|284095159|gb|EFC48791.1| predicted protein [Naegleria gruberi]
Length = 448
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 116/442 (26%), Positives = 218/442 (49%), Gaps = 32/442 (7%)
Query: 35 DLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQI 94
D+C + K++ S+ L S+D+ G+++ D G ++ + L SL+ + +I
Sbjct: 32 DICYSRIGAEGAKFI----SEMKQLTSLDIGGNEIGDEGSKYISEMKQLTSLNIDNN-RI 86
Query: 95 SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154
D G + + + LTSLS NN I +G K+ + + L LD+
Sbjct: 87 GDEGAKSISEMKQLTSLSIN-NNEIGVEGAKSISEMKQLTSLDI---------------- 129
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
N I D +K +S + LK L I +++ D G Y+ +++LT LN+
Sbjct: 130 ---------SGNGIGDKGVKFISEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIGEN 180
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
+ + S+S + L L++ ++ D+G + S++ L L++ N I D+ + +
Sbjct: 181 RIGDEGVKSISEMKQLTSLSIYNNRIGDEGAKSISEMKQLTSLDISGNGIGDKGVKSISE 240
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
+ L SL++ GIGDEG ++ + LK L++ ++G G +++S + L S+N+
Sbjct: 241 MKQLTSLDISGNGIGDEGAKFISEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIYNN 300
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
I ++ ++ + L SL + QI G+ +++ + L L++ I D G ++
Sbjct: 301 EIGVEGVKSISEMKQLTSLYIYNNQIGVEGVKSISEMKQLKSLNICYNEIGDKGVKFISE 360
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
K L SL I G G+ D GVK I ++ LT LN+S+N + + + IS + L SL++
Sbjct: 361 MKQLISLNIGGNGIGDEGVKSISEMKQLTSLNISKN-RIGAEGSKFISEMKQLTSLDICY 419
Query: 455 SRITSAGLRHLKPLKNLRSLTL 476
+ I G++ + +K L+SL++
Sbjct: 420 NEIGGEGVKSISEMKQLKSLSI 441
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 91/324 (28%), Positives = 170/324 (52%), Gaps = 1/324 (0%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N I D K +S + L SL I S++ G ++ +++LT L++ G + +S
Sbjct: 12 NQIGDEGAKSISEMKQLTSLDICYSRIGAEGAKFISEMKQLTSLDIGGNEIGDEGSKYIS 71
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
+ L LN++ ++ D+G + S++ L L++ NEI E + + L SL++
Sbjct: 72 EMKQLTSLNIDNNRIGDEGAKSISEMKQLTSLSINNNEIGVEGAKSISEMKQLTSLDISG 131
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
GIGD+G+ ++ + LK L++ ++G G +++S + L S+N+ I D ++ ++
Sbjct: 132 NGIGDKGVKFISEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIGENRIGDEGVKSIS 191
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
+ L SL++ +I D G +++ + LT LD+ G I D G + K L SL+I G
Sbjct: 192 EMKQLTSLSIYNNRIGDEGAKSISEMKQLTSLDISGNGIGDKGVKSISEMKQLTSLDISG 251
Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
G+ D G K I ++ L LL++ N + D+ + IS + L SLN+ N+ I G++ +
Sbjct: 252 NGIGDEGAKFISEMKQLKLLDIGGN-EIGDEGSKYISEMKQLTSLNIYNNEIGVEGVKSI 310
Query: 466 KPLKNLRSLTLESCKVTANDIKRL 489
+K L SL + + ++ +K +
Sbjct: 311 SEMKQLTSLYIYNNQIGVEGVKSI 334
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 111/409 (27%), Positives = 200/409 (48%), Gaps = 34/409 (8%)
Query: 117 NAITAQGMKAFAGLINLVKLDLERC-TRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMK 174
N I +G K+ + + L LD+ C +RI G + + +L SL+I N I D K
Sbjct: 12 NQIGDEGAKSISEMKQLTSLDI--CYSRIGAEGAKFISEMKQLTSLDI-GGNEIGDEGSK 68
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+S + L SL I +++ D G + +++LT L++ + S+S + L L+
Sbjct: 69 YISEMKQLTSLNIDNNRIGDEGAKSISEMKQLTSLSINNNEIGVEGAKSISEMKQLTSLD 128
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
++ + D G + S++ LK+L++G NEI DE ++ + L SLN+ IGDEG+
Sbjct: 129 ISGNGIGDKGVKFISEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIGENRIGDEGVK 188
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
+++ + L L + + ++G G + +S + L S+++S GI D ++ ++ + L SL+
Sbjct: 189 SISEMKQLTSLSIYNNRIGDEGAKSISEMKQLTSLDISGNGIGDKGVKSISEMKQLTSLD 248
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
+ I D G ++ + L LD+ G I D G+ Y+ K L SL I + GVK
Sbjct: 249 ISGNGIGDEGAKFISEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIYNNEIGVEGVK 308
Query: 415 HIKDLSSLTLLNLSQNC-----------------------NLTDKTLELISGLTGLVSLN 451
I ++ LT L + N + DK ++ IS + L+SLN
Sbjct: 309 SISEMKQLTSLYIYNNQIGVEGVKSISEMKQLKSLNICYNEIGDKGVKFISEMKQLISLN 368
Query: 452 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTA------NDIKRLQSRDL 494
+ + I G++ + +K L SL + ++ A +++K+L S D+
Sbjct: 369 IGGNGIGDEGVKSISEMKQLTSLNISKNRIGAEGSKFISEMKQLTSLDI 417
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 89/318 (27%), Positives = 169/318 (53%), Gaps = 4/318 (1%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G+ DK + I S+ L +D+ G+++ D G ++ + L SL+ +I D G++ +
Sbjct: 133 GIGDKGVKFI-SEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIGEN-RIGDEGVKSI 190
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
+ LTSLS NN I +G K+ + + L LD+ G+ ++ + +L SL+I
Sbjct: 191 SEMKQLTSLSIY-NNRIGDEGAKSISEMKQLTSLDISGNGIGDKGVKSISEMKQLTSLDI 249
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
N I D K +S + LK L I +++ D G Y+ +++LT LN+ + +
Sbjct: 250 SG-NGIGDEGAKFISEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIYNNEIGVEGVK 308
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
S+S + L L + Q+ +G + S++ LK LN+ +NEI D+ + + + L SLN
Sbjct: 309 SISEMKQLTSLYIYNNQIGVEGVKSISEMKQLKSLNICYNEIGDKGVKFISEMKQLISLN 368
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
+ GIGDEG+ +++ + L L +S ++G+ G + +S + L S+++ + I ++
Sbjct: 369 IGGNGIGDEGVKSISEMKQLTSLNISKNRIGAEGSKFISEMKQLTSLDICYNEIGGEGVK 428
Query: 343 KLAGLSSLKSLNLDARQI 360
++ + LKSL++ +Q+
Sbjct: 429 SISEMKQLKSLSIHNQQM 446
>gi|149175912|ref|ZP_01854530.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148845359|gb|EDL59704.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 495
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 145/492 (29%), Positives = 240/492 (48%), Gaps = 37/492 (7%)
Query: 3 PRDISQQIFNE----LVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSS 58
PRD + Q + ++++ T+ S D + + L + P V+D + V S+ +
Sbjct: 21 PRDKAIQAIRDAGGKVIFAPG-TDESTGNLGDKTVSMVMLNEIP-VDDSIL-VHVSKLTE 77
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
+ S+ + G+++TD GL L+D LQSL + QISD G++ L + L L+
Sbjct: 78 VTSLWIIGTEITDQGLTLLRDLQGLQSL-YITNNQISDAGIQQLPQVK-LVELTLG-GTK 134
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + +K F+ +L L++ + GL + KLE L + ITD M+ + G
Sbjct: 135 ITDESLKHFSNSSDLNTLNVGKTAVSDRGLQYVSQFKKLERLYLHETQ-ITDEGMQQIQG 193
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L NLKSL ++ +++TDSG+ L+ L +L L L +T A
Sbjct: 194 LKNLKSLMLNETEITDSGLTALRNLDQLEELFLNETKITGA------------------- 234
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
G +K ++ L L L +ITD + +LK L L+ L LD + D+GL +
Sbjct: 235 -----GLKKLERLTRLSKLILSETDITDADIKYLKELPALKRLYLDQTQLTDDGLSQIVD 289
Query: 299 LCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
+L+ L++S+ Q+ +GL +L SINLS I+D L L +L+L
Sbjct: 290 FPSLEMLDVSNNQITDAGLIYLLQNGKQWSSINLSGNQITDAGLSILGKSHIELTLDLSN 349
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
++TD GL LTS+ L L L +I+D G L L+S+++ G +TD ++ IK
Sbjct: 350 TEVTDAGLKYLTSMNMLFGLSLNNCQISDQGVQTLMELPALKSIQLNGTDITDCSLEIIK 409
Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 477
S + +L L + LTD + GLTGL L+++N+ +T A L+ + L L L+
Sbjct: 410 TKSDMLVLYLD-DTKLTDAGFSQLQGLTGLQILSLNNTAVTDASLKFFNKMTKLFELNLK 468
Query: 478 SCKVTANDIKRL 489
V+ +++L
Sbjct: 469 QTAVSDAAVQKL 480
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 107/328 (32%), Positives = 164/328 (50%), Gaps = 27/328 (8%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+ DS + +S LT + SL I +++TD G+ L+ LQ L
Sbjct: 64 VDDSILVHVSKLTEVTSLWIIGTEITDQGLTLLRDLQ---------------------GL 102
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
SL+ N Q+SD G ++ ++ L L LG +ITDE L H ++L +LN+
Sbjct: 103 QSLYITN---NQISDAGIQQLPQV-KLVELTLGGTKITDESLKHFSNSSDLNTLNVGKTA 158
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
+ D GL ++ L+ L L +TQ+ G++ + GL NL+S+ L+ T I+D L L L
Sbjct: 159 VSDRGLQYVSQFKKLERLYLHETQITDEGMQQIQGLKNLKSLMLNETEITDSGLTALRNL 218
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
L+ L L+ +IT GL L LT L+ L L ITD+ YL+ L+ L +
Sbjct: 219 DQLEELFLNETKITGAGLKKLERLTRLSKLILSETDITDADIKYLKELPALKRLYLDQTQ 278
Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-ELISGLTGLVSLNVSNSRITSAGLRHLK 466
LTD G+ I D SL +L++S N +TD L L+ S+N+S ++IT AGL L
Sbjct: 279 LTDDGLSQIVDFPSLEMLDVSNN-QITDAGLIYLLQNGKQWSSINLSGNQITDAGLSILG 337
Query: 467 PLKNLRSLTLESCKVTANDIKRLQSRDL 494
+L L + +VT +K L S ++
Sbjct: 338 KSHIELTLDLSNTEVTDAGLKYLTSMNM 365
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 101/352 (28%), Positives = 174/352 (49%), Gaps = 5/352 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S S L ++++ + V+D GL ++ L+ L + QI+D G++ ++GL NL SL
Sbjct: 144 SNSSDLNTLNVGKTAVSDRGLQYVSQFKKLERL-YLHETQITDEGMQQIQGLKNLKSLML 202
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
IT G+ A L L +L L GL L+ L +L L + + ITD+D+
Sbjct: 203 NETE-ITDSGLTALRNLDQLEELFLNETKITGAGLKKLERLTRLSKLILSETD-ITDADI 260
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY- 232
K L L LK L + +++TD G++ + L +L++ +T A L L G +
Sbjct: 261 KYLKELPALKRLYLDQTQLTDDGLSQIVDFPSLEMLDVSNNQITDAGLIYLLQNGKQWSS 320
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
+NL+ Q++D G K L+L E+TD L +L + L L+L++C I D+G
Sbjct: 321 INLSGNQITDAGLSILGKSHIELTLDLSNTEVTDAGLKYLTSMNMLFGLSLNNCQISDQG 380
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
+ L L LK ++L+ T + L + +++ + L T ++D +L GL+ L+
Sbjct: 381 VQTLMELPALKSIQLNGTDITDCSLEIIKTKSDMLVLYLDDTKLTDAGFSQLQGLTGLQI 440
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
L+L+ +TD L +T L L+L ++D+ L N ++ +IC
Sbjct: 441 LSLNNTAVTDASLKFFNKMTKLFELNLKQTAVSDAAVQKLLKKIN-KTEQIC 491
>gi|87311782|ref|ZP_01093896.1| hypothetical protein DSM3645_04405 [Blastopirellula marina DSM
3645]
gi|87285456|gb|EAQ77376.1| hypothetical protein DSM3645_04405 [Blastopirellula marina DSM
3645]
Length = 427
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 183/356 (51%), Gaps = 27/356 (7%)
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
+D ++PLS L ++K L++ + VTD I L ++ L + ++ A ++ LSA
Sbjct: 70 SFSDEQLEPLSKLKHVKILKVYGADVTDKTIDNLLQMKDLRDFSAANTTISDAGIEKLSA 129
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
L L L L R +S+ E ++ L+ L+L +++ITD + + + N+E L L+
Sbjct: 130 LKDLSVLQLRRTNISNKSLESMLQLPKLRYLDLRYDDITDAGMEIVAKMPNMEVLRLEGA 189
Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
+GDEGL +LTGL LK L + T V +G + ++ LTNLE++ + T ++ + LA
Sbjct: 190 IVGDEGLAHLTGLSKLKFLNVRGTNVTDAGFKSIANLTNLETLETNGTALTTEGMEYLAP 249
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT--------------------- 385
L+ +K+L L Q+ D G L + L +L L R+
Sbjct: 250 LTKVKTLELMRAQVKDDGFVHLKEMKQLQNLMLRQTRVAGAGMENLIGIDTLKSLDVSET 309
Query: 386 ---DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
D G ++ FKNL L + +T G+ HIKDL+++ L L +TD +LE +
Sbjct: 310 PFGDDGLIHVGKFKNLEKLNLWFTKVTPDGLPHIKDLTNMKTLILDYQ-GITDDSLENLV 368
Query: 443 GLTGLVSLNVS-NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 497
G+ L +L++ N IT+ +++LK LK L+ +++ ++ + + L+ ++LP L
Sbjct: 369 GMQKLQTLSLKDNDMITNESIKYLKQLKGLKKISITFTQIDSRGVAELK-KELPGL 423
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/354 (26%), Positives = 176/354 (49%), Gaps = 28/354 (7%)
Query: 150 NLKGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
L+ L KL+ + I + +TD + L + +L+ + + ++D+GI L L+ L+
Sbjct: 75 QLEPLSKLKHVKILKVYGADVTDKTIDNLLQMKDLRDFSAANTTISDAGIEKLSALKDLS 134
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
+L L ++ L+S+ L L YL+L ++D G E +K+ +++VL L + DE
Sbjct: 135 VLQLRRTNISNKSLESMLQLPKLRYLDLRYDDITDAGMEIVAKMPNMEVLRLEGAIVGDE 194
Query: 268 CLVHLKGL------------------------TNLESLNLDSCGIGDEGLVNLTGLCNLK 303
L HL GL TNLE+L + + EG+ L L +K
Sbjct: 195 GLAHLTGLSKLKFLNVRGTNVTDAGFKSIANLTNLETLETNGTALTTEGMEYLAPLTKVK 254
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
LEL QV G HL + L+++ L T ++ + L G+ +LKSL++ D
Sbjct: 255 TLELMRAQVKDDGFVHLKEMKQLQNLMLRQTRVAGAGMENLIGIDTLKSLDVSETPFGDD 314
Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
GL + L L+L+ ++T G ++++ N+++L + G+TD ++++ + L
Sbjct: 315 GLIHVGKFKNLEKLNLWFTKVTPDGLPHIKDLTNMKTLILDYQGITDDSLENLVGMQKLQ 374
Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 477
L+L N +T+++++ + L GL ++++ ++I S G+ LK K L L +E
Sbjct: 375 TLSLKDNDMITNESIKYLKQLKGLKKISITFTQIDSRGVAELK--KELPGLEVE 426
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 157/320 (49%), Gaps = 52/320 (16%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRRNNA------ 118
G+DVTD + +L +L+ DF+ ISD G+E L L +L+ L RR N
Sbjct: 92 GADVTDKTIDNLLQMKDLR--DFSAANTTISDAGIEKLSALKDLSVLQLRRTNISNKSLE 149
Query: 119 -----------------ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
IT GM+ A + N+ L LE GL +L GL KL+ LN
Sbjct: 150 SMLQLPKLRYLDLRYDDITDAGMEIVAKMPNMEVLRLEGAIVGDEGLAHLTGLSKLKFLN 209
Query: 162 IKWCNCITDSDMKPLSGLTNL------------------------KSLQISCSKVTDSGI 197
++ N +TD+ K ++ LTNL K+L++ ++V D G
Sbjct: 210 VRGTN-VTDAGFKSIANLTNLETLETNGTALTTEGMEYLAPLTKVKTLELMRAQVKDDGF 268
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
+LK +++L L L V A +++L + +L L+++ DDG K +L+ L
Sbjct: 269 VHLKEMKQLQNLMLRQTRVAGAGMENLIGIDTLKSLDVSETPFGDDGLIHVGKFKNLEKL 328
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSG 316
NL F ++T + L H+K LTN+++L LD GI D+ L NL G+ L+ L L D + +
Sbjct: 329 NLWFTKVTPDGLPHIKDLTNMKTLILDYQGITDDSLENLVGMQKLQTLSLKDNDMITNES 388
Query: 317 LRHLSGLTNLESINLSFTGI 336
+++L L L+ I+++FT I
Sbjct: 389 IKYLKQLKGLKKISITFTQI 408
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 139/294 (47%), Gaps = 27/294 (9%)
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
G + +++ SD+ E SK+ +K+L + ++TD+ + +L + +L + +
Sbjct: 59 GVVTVADMSVASFSDEQLEPLSKLKHVKILKVYGADVTDKTIDNLLQMKDLRDFSAANTT 118
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
I D G+ L+ L +L L+L T + + L + L L ++L + I+D + +A +
Sbjct: 119 ISDAGIEKLSALKDLSVLQLRRTNISNKSLESMLQLPKLRYLDLRYDDITDAGMEIVAKM 178
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
+++ L L+ + D GLA LT L+ L L++ G +TD+G + N NL +LE G
Sbjct: 179 PNMEVLRLEGAIVGDEGLAHLTGLSKLKFLNVRGTNVTDAGFKSIANLTNLETLETNGTA 238
Query: 408 LT------------------------DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
LT D G H+K++ L L L Q + +E + G
Sbjct: 239 LTTEGMEYLAPLTKVKTLELMRAQVKDDGFVHLKEMKQLQNLMLRQ-TRVAGAGMENLIG 297
Query: 444 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 497
+ L SL+VS + GL H+ KNL L L KVT + + + +DL N+
Sbjct: 298 IDTLKSLDVSETPFGDDGLIHVGKFKNLEKLNLWFTKVTPDGLPHI--KDLTNM 349
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 130/258 (50%), Gaps = 5/258 (1%)
Query: 40 QYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL 99
+Y + D M+++A ++ + L G+ V D GL HL S L+ L+ ++D G
Sbjct: 163 RYDDITDAGMEIVAKM-PNMEVLRLEGAIVGDEGLAHLTGLSKLKFLNVR-GTNVTDAGF 220
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
+ + L+NL +L A+T +GM+ A L + L+L R G V+LK + +L++
Sbjct: 221 KSIANLTNLETLE-TNGTALTTEGMEYLAPLTKVKTLELMRAQVKDDGFVHLKEMKQLQN 279
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L ++ + + M+ L G+ LKSL +S + D G+ ++ + L LNL VT
Sbjct: 280 LMLRQTR-VAGAGMENLIGIDTLKSLDVSETPFGDDGLIHVGKFKNLEKLNLWFTKVTPD 338
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNL 278
L + L ++ L L+ ++DD E + L+ L+L N+ IT+E + +LK L L
Sbjct: 339 GLPHIKDLTNMKTLILDYQGITDDSLENLVGMQKLQTLSLKDNDMITNESIKYLKQLKGL 398
Query: 279 ESLNLDSCGIGDEGLVNL 296
+ +++ I G+ L
Sbjct: 399 KKISITFTQIDSRGVAEL 416
>gi|46447199|ref|YP_008564.1| hypothetical protein pc1565 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400840|emb|CAF24289.1| hypothetical protein pc1565 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 1143
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 139/365 (38%), Positives = 201/365 (55%), Gaps = 12/365 (3%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL 77
LT+ L A +DC L+ L L + D + + S +L +DL G +TDSGL HL
Sbjct: 767 LTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHL-SPLVALQHLDLGGCYKITDSGLAHL 825
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
LQ LD C +I+D GL +L L L L+ R +T G+ + L+ L LD
Sbjct: 826 SRLVALQHLDLGGCYEITDSGLTYLSRLVALQHLNLNRCVCLTDDGLAYLSHLVALQYLD 885
Query: 138 LERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDS 195
L+RC +I GL +L L+ L+ LN+ CN +TDS + LS LT+LK L + C+K+TDS
Sbjct: 886 LDRCWKITDRGLAHLSSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLDLRDCAKLTDS 945
Query: 196 GIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGS 253
G+A+L L L LNL C +T L LS L +L +L+L C +++D G S + +
Sbjct: 946 GLAHLSLLVNLQYLNLNRCNNLTDRGLAHLSHLVALQHLDLGECYKITDSGLAHLSLLVN 1005
Query: 254 LKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SDT 310
L+ LNL + +TD L HL L L+ LNL+ C + D+GL L+ L L+ L L S
Sbjct: 1006 LQYLNLNRCDNLTDRGLAHLSRLVTLQHLNLNCCVCLTDDGLAYLSPLVALRHLNLRSCD 1065
Query: 311 QVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAAL 368
+ S+GL HL+ L L+ +NLS+ ++D L L L+SLK L+L + T +GLA
Sbjct: 1066 NLTSAGLAHLTPLIALQYLNLSYCDSLNDNGLTHLTRLASLKHLDLSECPYFTISGLAHF 1125
Query: 369 TSLTG 373
+L
Sbjct: 1126 KALAA 1130
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 128/320 (40%), Positives = 179/320 (55%), Gaps = 10/320 (3%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+ TD+GL HL LQ LD C +I+D GL +L L L L+ +T G+
Sbjct: 226 NFTDAGLAHLSRLVALQHLDLGGCYKITDSGLTYLSRLVALQHLNLNCCVCLTDDGLAYL 285
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
+ L+ L LDL C +I GL +L L+ L+ LN+ CN +TDS + LS LT+LK L
Sbjct: 286 SHLVALQHLDLGECYKITDSGLAHLSSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLD 345
Query: 187 I-SCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDD 243
+ C+K+TDSG+A+L L L LNL C +T L LS L +L YL+L C +L+
Sbjct: 346 LRDCAKLTDSGLAHLSLLVNLQYLNLNRCYNLTDRGLSHLSHLVALQYLDLGLCKKLTSS 405
Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN 301
G S + +L+ L+L EITD L HL L L+ LNL+ C + D+GL L+ L
Sbjct: 406 GLAHLSPLVALQYLDLDRCGEITDRGLAHLSRLVALQHLNLNCCACLTDDGLAYLSPLVA 465
Query: 302 LKCLELSDT-QVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DAR 358
L+ L L + S+GL HL+ L L+ +NLS+ ++D L L L+SLK L+L +
Sbjct: 466 LRHLNLRCCGNLTSAGLAHLTPLIALQYLNLSYCDSLNDNGLTHLTRLASLKHLDLSECP 525
Query: 359 QITDTGLAALTSL-TGLTHL 377
TD+GLA T+L T LTH
Sbjct: 526 YFTDSGLAHFTALATSLTHF 545
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 144/385 (37%), Positives = 201/385 (52%), Gaps = 21/385 (5%)
Query: 96 DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGL 154
+GG+E SL F N +T + A NL L L C GL +L L
Sbjct: 753 EGGIE---------SLDFSNNAYLTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHLSPL 803
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEG 213
+ L+ L++ C ITDS + LS L L+ L + C ++TDSG+ YL L L LNL
Sbjct: 804 VALQHLDLGGCYKITDSGLAHLSRLVALQHLDLGGCYEITDSGLTYLSRLVALQHLNLNR 863
Query: 214 CP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLV 270
C +T L LS L +L YL+L+RC +++D G S + +L+ LNLG N +TD L
Sbjct: 864 CVCLTDDGLAYLSHLVALQYLDLDRCWKITDRGLAHLSSLLALQHLNLGCCNNLTDSGLA 923
Query: 271 HLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLES 328
HL LT+L+ L+L C + D GL +L+ L NL+ L L+ + GL HLS L L+
Sbjct: 924 HLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQYLNLNRCNNLTDRGLAHLSHLVALQH 983
Query: 329 INL-SFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-IT 385
++L I+D L L+ L +L+ LNL+ +TD GLA L+ L L HL+L +T
Sbjct: 984 LDLGECYKITDSGLAHLSLLVNLQYLNLNRCDNLTDRGLAHLSRLVTLQHLNLNCCVCLT 1043
Query: 386 DSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 444
D G AYL LR L + LT AG+ H+ L +L LNLS +L D L ++ L
Sbjct: 1044 DDGLAYLSPLVALRHLNLRSCDNLTSAGLAHLTPLIALQYLNLSYCDSLNDNGLTHLTRL 1103
Query: 445 TGLVSLNVSN-SRITSAGLRHLKPL 468
L L++S T +GL H K L
Sbjct: 1104 ASLKHLDLSECPYFTISGLAHFKAL 1128
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 136/344 (39%), Positives = 182/344 (52%), Gaps = 34/344 (9%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQ 204
L+ LK L+ L + C TD+ + LS L L+ L + C K+TDSG+A+L L
Sbjct: 770 AHLLALKDCKNLKVLRLHECRNFTDAGLAHLSPLVALQHLDLGGCYKITDSGLAHLSRLV 829
Query: 205 KLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF- 261
L L+L GC +T + L LS L +L +LNLNRC L+DDG S + +L+ L+L
Sbjct: 830 ALQHLDLGGCYEITDSGLTYLSRLVALQHLNLNRCVCLTDDGLAYLSHLVALQYLDLDRC 889
Query: 262 NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRH 319
+ITD L HL L L+ LNL C + D GL +L+ L +LK L+L D ++ SGL H
Sbjct: 890 WKITDRGLAHLSSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSGLAH 949
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
LS L NL+ +NL+ +TD GLA L+ L L HLDL
Sbjct: 950 LSLLVNLQYLNLN-----------------------RCNNLTDRGLAHLSHLVALQHLDL 986
Query: 380 FG-ARITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436
+ITDSG A+L NL+ L + C LTD G+ H+ L +L LNL+ LTD
Sbjct: 987 GECYKITDSGLAHLSLLVNLQYLNLNRCDN-LTDRGLAHLSRLVTLQHLNLNCCVCLTDD 1045
Query: 437 TLELISGLTGLVSLNV-SNSRITSAGLRHLKPLKNLRSLTLESC 479
L +S L L LN+ S +TSAGL HL PL L+ L L C
Sbjct: 1046 GLAYLSPLVALRHLNLRSCDNLTSAGLAHLTPLIALQYLNLSYC 1089
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 127/334 (38%), Positives = 179/334 (53%), Gaps = 11/334 (3%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQ 204
L+ LK L+ L + C TD+ + LS L L+ L + C K+TDSG+ YL L
Sbjct: 205 AHLLALKDCKNLKVLRLHECRNFTDAGLAHLSRLVALQHLDLGGCYKITDSGLTYLSRLV 264
Query: 205 KLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF- 261
L LNL C +T L LS L +L +L+L C +++D G S + +L+ LNLG
Sbjct: 265 ALQHLNLNCCVCLTDDGLAYLSHLVALQHLDLGECYKITDSGLAHLSSLLALQHLNLGCC 324
Query: 262 NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRH 319
N +TD L HL LT+L+ L+L C + D GL +L+ L NL+ L L+ + GL H
Sbjct: 325 NNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQYLNLNRCYNLTDRGLSH 384
Query: 320 LSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHL 377
LS L L+ ++L ++ L L+ L +L+ L+LD +ITD GLA L+ L L HL
Sbjct: 385 LSHLVALQYLDLGLCKKLTSSGLAHLSPLVALQYLDLDRCGEITDRGLAHLSRLVALQHL 444
Query: 378 DL-FGARITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
+L A +TD G AYL LR L + C G LT AG+ H+ L +L LNLS +L D
Sbjct: 445 NLNCCACLTDDGLAYLSPLVALRHLNLRCCGNLTSAGLAHLTPLIALQYLNLSYCDSLND 504
Query: 436 KTLELISGLTGLVSLNVSN-SRITSAGLRHLKPL 468
L ++ L L L++S T +GL H L
Sbjct: 505 NGLTHLTRLASLKHLDLSECPYFTDSGLAHFTAL 538
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 125/333 (37%), Positives = 176/333 (52%), Gaps = 34/333 (10%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC- 214
+ESL+ +TD+ + L NLK L++ C TD+G+A+L L L L+L GC
Sbjct: 191 IESLDFSNNAYLTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHLSRLVALQHLDLGGCY 250
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHL 272
+T + L LS L +L +LNLN C L+DDG S + +L+ L+LG +ITD L HL
Sbjct: 251 KITDSGLTYLSRLVALQHLNLNCCVCLTDDGLAYLSHLVALQHLDLGECYKITDSGLAHL 310
Query: 273 KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESIN 330
L L+ LNL C + D GL +L+ L +LK L+L D ++ SGL HLS L NL+ +N
Sbjct: 311 SSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQYLN 370
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL-FGARITDSGA 389
L+ +TD GL+ L+ L L +LDL ++T SG
Sbjct: 371 LN-----------------------RCYNLTDRGLSHLSHLVALQYLDLGLCKKLTSSGL 407
Query: 390 AYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
A+L L+ L++ CG +TD G+ H+ L +L LNL+ LTD L +S L L
Sbjct: 408 AHLSPLVALQYLDLDRCGE-ITDRGLAHLSRLVALQHLNLNCCACLTDDGLAYLSPLVAL 466
Query: 448 VSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 479
LN+ +TSAGL HL PL L+ L L C
Sbjct: 467 RHLNLRCCGNLTSAGLAHLTPLIALQYLNLSYC 499
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 126/222 (56%), Gaps = 7/222 (3%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+++TDSGL HL ++L+ LD C +++D GL HL L NL L+ R N +T +G+
Sbjct: 915 NNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQYLNLNRCNNLTDRGLAH 974
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+ L+ L LDL C +I GL +L L+ L+ LN+ C+ +TD + LS L L+ L
Sbjct: 975 LSHLVALQHLDLGECYKITDSGLAHLSLLVNLQYLNLNRCDNLTDRGLAHLSRLVTLQHL 1034
Query: 186 QISCSK-VTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSD 242
++C +TD G+AYL L L LNL C +T+A L L+ L +L YLNL+ C L+D
Sbjct: 1035 NLNCCVCLTDDGLAYLSPLVALRHLNLRSCDNLTSAGLAHLTPLIALQYLNLSYCDSLND 1094
Query: 243 DGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNL 283
+G +++ SLK L+L T L H K L SLNL
Sbjct: 1095 NGLTHLTRLASLKHLDLSECPYFTISGLAHFKALA--ASLNL 1134
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 177/332 (53%), Gaps = 32/332 (9%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC- 214
+ESL+ +TD+ + L NLK L++ C TD+G+A+L L L L+L GC
Sbjct: 756 IESLDFSNNAYLTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHLSPLVALQHLDLGGCY 815
Query: 215 PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHL 272
+T + L LS L +L +L+L C +++D G S++ +L+ LNL +TD+ L +L
Sbjct: 816 KITDSGLAHLSRLVALQHLDLGGCYEITDSGLTYLSRLVALQHLNLNRCVCLTDDGLAYL 875
Query: 273 KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESIN 330
L L+ L+LD C I D GL +L+ L L+ L L + SGL HLS LT+L+ ++
Sbjct: 876 SHLVALQYLDLDRCWKITDRGLAHLSSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLD 935
Query: 331 L-SFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
L ++D L L+ L +L+ LNL+ +TD GLA L+ L L HLDL G
Sbjct: 936 LRDCAKLTDSGLAHLSLLVNLQYLNLNRCNNLTDRGLAHLSHLVALQHLDL--------G 987
Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
Y +TD+G+ H+ L +L LNL++ NLTD+ L +S L L
Sbjct: 988 ECY---------------KITDSGLAHLSLLVNLQYLNLNRCDNLTDRGLAHLSRLVTLQ 1032
Query: 449 SLNVSNSR-ITSAGLRHLKPLKNLRSLTLESC 479
LN++ +T GL +L PL LR L L SC
Sbjct: 1033 HLNLNCCVCLTDDGLAYLSPLVALRHLNLRSC 1064
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 120/215 (55%), Gaps = 5/215 (2%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+++TDSGL HL ++L+ LD C +++D GL HL L NL L+ R +T +G+
Sbjct: 325 NNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQYLNLNRCYNLTDRGLSH 384
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+ L+ L LDL C ++ GL +L L+ L+ L++ C ITD + LS L L+ L
Sbjct: 385 LSHLVALQYLDLGLCKKLTSSGLAHLSPLVALQYLDLDRCGEITDRGLAHLSRLVALQHL 444
Query: 186 QISCSK-VTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSD 242
++C +TD G+AYL L L LNL C +T+A L L+ L +L YLNL+ C L+D
Sbjct: 445 NLNCCACLTDDGLAYLSPLVALRHLNLRCCGNLTSAGLAHLTPLIALQYLNLSYCDSLND 504
Query: 243 DGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLT 276
+G +++ SLK L+L TD L H L
Sbjct: 505 NGLTHLTRLASLKHLDLSECPYFTDSGLAHFTALA 539
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 88/234 (37%), Positives = 127/234 (54%), Gaps = 8/234 (3%)
Query: 264 ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLS 321
+TD L+ LK NL+ L L C D GL +L+ L L+ L+L ++ SGL HLS
Sbjct: 767 LTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHLSPLVALQHLDLGGCYKITDSGLAHLS 826
Query: 322 GLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL 379
L L+ ++L I+D L L+ L +L+ LNL+ +TD GLA L+ L L +LDL
Sbjct: 827 RLVALQHLDLGGCYEITDSGLTYLSRLVALQHLNLNRCVCLTDDGLAYLSHLVALQYLDL 886
Query: 380 FGA-RITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
+ITD G A+L + L+ L + C LTD+G+ H+ L+SL L+L LTD
Sbjct: 887 DRCWKITDRGLAHLSSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSG 946
Query: 438 LELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRL 489
L +S L L LN++ + +T GL HL L L+ L L C K+T + + L
Sbjct: 947 LAHLSLLVNLQYLNLNRCNNLTDRGLAHLSHLVALQHLDLGECYKITDSGLAHL 1000
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 114/210 (54%), Gaps = 7/210 (3%)
Query: 278 LESLNL-DSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLS-FT 334
+ESL+ ++ + D L+ L NLK L L + + +GL HLS L L+ ++L
Sbjct: 191 IESLDFSNNAYLTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHLSRLVALQHLDLGGCY 250
Query: 335 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL 392
I+D L L+ L +L+ LNL+ +TD GLA L+ L L HLDL +ITDSG A+L
Sbjct: 251 KITDSGLTYLSRLVALQHLNLNCCVCLTDDGLAYLSHLVALQHLDLGECYKITDSGLAHL 310
Query: 393 RNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
+ L+ L + C LTD+G+ H+ L+SL L+L LTD L +S L L LN
Sbjct: 311 SSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQYLN 370
Query: 452 VSN-SRITSAGLRHLKPLKNLRSLTLESCK 480
++ +T GL HL L L+ L L CK
Sbjct: 371 LNRCYNLTDRGLSHLSHLVALQYLDLGLCK 400
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
S ++T +GL HL LQ L+ ++C ++D GL HL L++L L T G+
Sbjct: 1063 SCDNLTSAGLAHLTPLIALQYLNLSYCDSLNDNGLTHLTRLASLKHLDLSECPYFTISGL 1122
Query: 125 KAFAGLINLVKLDLER 140
F L + L + R
Sbjct: 1123 AHFKALAASLNLKIIR 1138
Score = 38.9 bits (89), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 392 LRNFKNLRSLEICGG----------GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
F NL S EI GG LTDA + +KD +L +L L + N TD L +
Sbjct: 176 FEEFLNLFSNEIEGGIESLDFSNNAYLTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHL 235
Query: 442 SGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 485
S L L L++ +IT +GL +L L L+ L L C +D
Sbjct: 236 SRLVALQHLDLGGCYKITDSGLTYLSRLVALQHLNLNCCVCLTDD 280
>gi|108763744|ref|YP_632240.1| leucine-rich repeat-containing protein [Myxococcus xanthus DK 1622]
gi|108467624|gb|ABF92809.1| leucine-rich repeat domain protein [Myxococcus xanthus DK 1622]
Length = 624
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 150/487 (30%), Positives = 226/487 (46%), Gaps = 45/487 (9%)
Query: 16 YSRCLTEVSLEA--------FRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS 67
Y+ L V EA R+ + +L G GV + V Q S ++++ +SG+
Sbjct: 90 YAEPLRPVRTEAEAREIAAVLREHHVPELSFGAV-GVPAPELLVALLQESGVVALQVSGT 148
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
D ++ L L++ + L++L N ++++ GL L+ + L L +
Sbjct: 149 DFGNAHLASLENATQLEALHLN-ATRVTNVGLAPLKRMRRLAVLRLDETPV-------SD 200
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
AGL +L + R + G V+ +GL L +P L+ L +
Sbjct: 201 AGLASLSEHTTLRRVTLAGTAVSPQGLGFLAR--------------QP-----GLEELDL 241
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
S + V D+ +A L G L LNL G VT A L LSA+ SL L L R SD
Sbjct: 242 SDTAVDDTVLAVLPG-APLHTLNLSGTKVTNAGLRGLSAMPSLRRLGLARTAASDASLLH 300
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
+ + L+ L+LG ++TD L+HL L L +L L I GL +L GL L+ L L
Sbjct: 301 ITGLRELEALHLGSTQVTDAGLLHLAKLPALRALVLSKARIRGAGLRHLAGLSRLEALHL 360
Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
DT VG S LRHL GL L ++LS T I+ L++L+ L +L+SL L +TD L A
Sbjct: 361 DDTLVGDSALRHLRGLNELRELDLSRTAITGTGLQELSTLVALESLWLSGLALTDDSLTA 420
Query: 368 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD----LSSLT 423
L L+ LT L L I +L + LR L++ G TD V I+ L SL
Sbjct: 421 LAPLSQLTRLALSHTPIGPEALNHLGSRPLLRHLDLSKTGFTDEWVPSIRQAFPGLHSLK 480
Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 483
++ LTD L + T L +++V+ + I +GL L L L +L L + ++ +
Sbjct: 481 ----AERTLLTDAGLGQFAEWTELEAIHVAGTLINGSGLTRLHTLARLTTLDLGATRLDS 536
Query: 484 NDIKRLQ 490
K LQ
Sbjct: 537 EGQKALQ 543
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 114/430 (26%), Positives = 199/430 (46%), Gaps = 32/430 (7%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ ++L V L+G+ V+ GL L L+ LD + + D L L G + L +L+
Sbjct: 207 SEHTTLRRVTLAGTAVSPQGLGFLARQPGLEELDLSDT-AVDDTVLAVLPG-APLHTLNL 264
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+T G++ + + +L +L L R L+++ GL +LE+L++ +TD+ +
Sbjct: 265 S-GTKVTNAGLRGLSAMPSLRRLGLARTAASDASLLHITGLRELEALHLG-STQVTDAGL 322
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
L+ L L++L +S +++ +G+ +L GL +L L+L+ V + L L L L L
Sbjct: 323 LHLAKLPALRALVLSKARIRGAGLRHLAGLSRLEALHLDDTLVGDSALRHLRGLNELREL 382
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+L+R ++ G ++ S + +L+ L L +TD+ L L L+ L L L IG E L
Sbjct: 383 DLSRTAITGTGLQELSTLVALESLWLSGLALTDDSLTALAPLSQLTRLALSHTPIGPEAL 442
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
+L L+ L+LS T + + L S+ T ++D L + A + L++
Sbjct: 443 NHLGSRPLLRHLDLSKTGFTDEWVPSIRQAFPGLHSLKAERTLLTDAGLGQFAEWTELEA 502
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
+++ I +GL L +L LT LDL R+ G L+ F L L + G D
Sbjct: 503 IHVAGTLINGSGLTRLHTLARLTTLDLGATRLDSEGQKALQGFTKLVWLSVAGVRTGDEM 562
Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 472
+ H+ L +L ++ +++T AGL L L +LR
Sbjct: 563 LGHLPR---------------------------SLRTLYLTRTKVTDAGLPALHKLPHLR 595
Query: 473 SLTLESCKVT 482
L L V+
Sbjct: 596 ELDLRGTAVS 605
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 118/406 (29%), Positives = 185/406 (45%), Gaps = 29/406 (7%)
Query: 6 ISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDV----IASQG----- 56
+S Q L L E+ L D A+ D L PG +++ + + G
Sbjct: 222 VSPQGLGFLARQPGLEELDLS---DTAVDDTVLAVLPGAPLHTLNLSGTKVTNAGLRGLS 278
Query: 57 --SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
SL + L+ + +D+ L+H+ L++L Q++D GL HL L L +L
Sbjct: 279 AMPSLRRLGLARTAASDASLLHITGLRELEALHLG-STQVTDAGLLHLAKLPALRALVLS 337
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+ I G++ AGL L L L+ L +L+GL +L L++ IT + ++
Sbjct: 338 KAR-IRGAGLRHLAGLSRLEALHLDDTLVGDSALRHLRGLNELRELDLS-RTAITGTGLQ 395
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
LS L L+SL +S +TD + L L +LT L L P+ L+ L + L +L+
Sbjct: 396 ELSTLVALESLWLSGLALTDDSLTALAPLSQLTRLALSHTPIGPEALNHLGSRPLLRHLD 455
Query: 235 LNRCQLSDDGC----EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L++ +D+ + F + SLK +TD L T LE++++ I
Sbjct: 456 LSKTGFTDEWVPSIRQAFPGLHSLKAER---TLLTDAGLGQFAEWTELEAIHVAGTLING 512
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS-S 349
GL L L L L+L T++ S G + L G T L + LS G+ G L L S
Sbjct: 513 SGLTRLHTLARLTTLDLGATRLDSEGQKALQGFTKL--VWLSVAGVRTGD-EMLGHLPRS 569
Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI-TDSGAAYLRN 394
L++L L ++TD GL AL L L LDL G + T++ +A R
Sbjct: 570 LRTLYLTRTKVTDAGLPALHKLPHLRELDLRGTAVSTEARSALARE 615
>gi|59802561|gb|AAX07517.1| putative regulatory subunit [Gemmata sp. Wa1-1]
Length = 402
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 104/257 (40%), Positives = 149/257 (57%), Gaps = 1/257 (0%)
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
SL LNL +++D G ++ + L VL+LG ++TD L L+GLTNL + +
Sbjct: 119 SLTGLNLRFTKVTDLGLKEMRSLSKLTVLDLGRTKVTDAGLQELRGLTNLTTWISAPHEV 178
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
D GL L+GL NL L L T+V GL+ L GLTNL S++L T +D SL +L GL+
Sbjct: 179 TDAGLKELSGLANLTELNLRFTKVTYLGLKELKGLTNLTSLDLFGTSTTDASLAELKGLT 238
Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
+L LNL ++TD GL LT L L LDL ++TD+G L+ NL L++ G +
Sbjct: 239 NLTELNLSDTKVTDAGLQELTGLANLASLDLRFTKVTDAGLQKLKGLSNLAVLDLFGTSV 298
Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 468
TDAG+K + LS LT+L+L + +T L+ ++GL L SL++ + +T AGL+ L L
Sbjct: 299 TDAGLKELGRLSKLTVLDLG-STKVTGTGLKELTGLANLTSLHLRLTAVTDAGLKELSGL 357
Query: 469 KNLRSLTLESCKVTAND 485
NL SL L V+ D
Sbjct: 358 ANLTSLDLFGTPVSDTD 374
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 111/286 (38%), Positives = 160/286 (55%), Gaps = 2/286 (0%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
R +LT L+ R +T G+K L L LDL R GL L+GL L + I
Sbjct: 115 RDFISLTGLNLRFTK-VTDLGLKEMRSLSKLTVLDLGRTKVTDAGLQELRGLTNLTTW-I 172
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
+ +TD+ +K LSGL NL L + +KVT G+ LKGL LT L+L G T A L
Sbjct: 173 SAPHEVTDAGLKELSGLANLTELNLRFTKVTYLGLKELKGLTNLTSLDLFGTSTTDASLA 232
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
L L +L LNL+ +++D G ++ + + +L L+L F ++TD L LKGL+NL L+
Sbjct: 233 ELKGLTNLTELNLSDTKVTDAGLQELTGLANLASLDLRFTKVTDAGLQKLKGLSNLAVLD 292
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
L + D GL L L L L+L T+V +GL+ L+GL NL S++L T ++D L+
Sbjct: 293 LFGTSVTDAGLKELGRLSKLTVLDLGSTKVTGTGLKELTGLANLTSLHLRLTAVTDAGLK 352
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
+L+GL++L SL+L ++DT L L L+ LT L L +TD G
Sbjct: 353 ELSGLANLTSLDLFGTPVSDTDLKELKKLSKLTSLRLGRTAVTDVG 398
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 161/309 (52%), Gaps = 25/309 (8%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+L L + +KVTD G+ ++ L KLT+L+L VT A L L L +L ++
Sbjct: 119 SLTGLNLRFTKVTDLGLKEMRSLSKLTVLDLGRTKVTDAGLQELRGLTNLTTWISAPHEV 178
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
+D G ++ S + +L LNL F ++T L LKGLTNL SL+L D L L GL
Sbjct: 179 TDAGLKELSGLANLTELNLRFTKVTYLGLKELKGLTNLTSLDLFGTSTTDASLAELKGLT 238
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
NL L LSDT+V +GL+ L+GL NL S++L FT ++D L+KL GLS+L L+L +
Sbjct: 239 NLTELNLSDTKVTDAGLQELTGLANLASLDLRFTKVTDAGLQKLKGLSNLAVLDLFGTSV 298
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
TD GL L L+ LT LDL ++T +G L NL SL + +TDAG+K +
Sbjct: 299 TDAGLKELGRLSKLTVLDLGSTKVTGTGLKELTGLANLTSLHLRLTAVTDAGLKEL---- 354
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
SGL L SL++ + ++ L+ LK L L SL L
Sbjct: 355 ---------------------SGLANLTSLDLFGTPVSDTDLKELKKLSKLTSLRLGRTA 393
Query: 481 VTANDIKRL 489
VT IK L
Sbjct: 394 VTDVGIKEL 402
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 98/257 (38%), Positives = 142/257 (55%), Gaps = 1/257 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ L LN+++ +TD +K + L+ L L + +KVTD+G+ L+GL LT
Sbjct: 117 FISLTGLNLRFTK-VTDLGLKEMRSLSKLTVLDLGRTKVTDAGLQELRGLTNLTTWISAP 175
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
VT A L LS L +L LNL +++ G ++ + +L L+L TD L LK
Sbjct: 176 HEVTDAGLKELSGLANLTELNLRFTKVTYLGLKELKGLTNLTSLDLFGTSTTDASLAELK 235
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
GLTNL LNL + D GL LTGL NL L+L T+V +GL+ L GL+NL ++L
Sbjct: 236 GLTNLTELNLSDTKVTDAGLQELTGLANLASLDLRFTKVTDAGLQKLKGLSNLAVLDLFG 295
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
T ++D L++L LS L L+L + ++T TGL LT L LT L L +TD+G L
Sbjct: 296 TSVTDAGLKELGRLSKLTVLDLGSTKVTGTGLKELTGLANLTSLHLRLTAVTDAGLKELS 355
Query: 394 NFKNLRSLEICGGGLTD 410
NL SL++ G ++D
Sbjct: 356 GLANLTSLDLFGTPVSD 372
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 151/288 (52%), Gaps = 27/288 (9%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L +DL + VTD+GL L+ +NL + + +++D GL+ L GL+NLT L+ R
Sbjct: 142 SKLTVLDLGRTKVTDAGLQELRGLTNLTTW-ISAPHEVTDAGLKELSGLANLTELNLRFT 200
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T G+K GL NL LDL + L LKGL L LN+ +TD+ ++ L
Sbjct: 201 K-VTYLGLKELKGLTNLTSLDLFGTSTTDASLAELKGLTNLTELNLSDTK-VTDAGLQEL 258
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+GL NL SL + +KVTD+G+ LKGL L +L+L G VT
Sbjct: 259 TGLANLASLDLRFTKVTDAGLQKLKGLSNLAVLDLFGTSVT------------------- 299
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
D G ++ ++ L VL+LG ++T L L GL NL SL+L + D GL L
Sbjct: 300 -----DAGLKELGRLSKLTVLDLGSTKVTGTGLKELTGLANLTSLHLRLTAVTDAGLKEL 354
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
+GL NL L+L T V + L+ L L+ L S+ L T ++D +++L
Sbjct: 355 SGLANLTSLDLFGTPVSDTDLKELKKLSKLTSLRLGRTAVTDVGIKEL 402
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 123/224 (54%), Gaps = 3/224 (1%)
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
+L LNL + D GL + L L L+L T+V +GL+ L GLTNL + + +
Sbjct: 119 SLTGLNLRFTKVTDLGLKEMRSLSKLTVLDLGRTKVTDAGLQELRGLTNLTTWISAPHEV 178
Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
+D L++L+GL++L LNL ++T GL L LT LT LDLFG TD+ A L+
Sbjct: 179 TDAGLKELSGLANLTELNLRFTKVTYLGLKELKGLTNLTSLDLFGTSTTDASLAELKGLT 238
Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456
NL L + +TDAG++ + L++L L+L + +TD L+ + GL+ L L++ +
Sbjct: 239 NLTELNLSDTKVTDAGLQELTGLANLASLDL-RFTKVTDAGLQKLKGLSNLAVLDLFGTS 297
Query: 457 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 500
+T AGL+ L L L L L S KVT +K L L NL S
Sbjct: 298 VTDAGLKELGRLSKLTVLDLGSTKVTGTGLKELTG--LANLTSL 339
>gi|442319589|ref|YP_007359610.1| hypothetical protein MYSTI_02610 [Myxococcus stipitatus DSM 14675]
gi|441487231|gb|AGC43926.1| hypothetical protein MYSTI_02610 [Myxococcus stipitatus DSM 14675]
Length = 600
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 132/455 (29%), Positives = 219/455 (48%), Gaps = 32/455 (7%)
Query: 36 LCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQIS 95
LC + GV + + +G+SL+++ SGS + D+ L L+D + ++L + +++
Sbjct: 97 LCF-EATGVPEPTLLAALVRGTSLVTLRASGSSLGDAHLGALRDFTAWEALHLD-GTRVT 154
Query: 96 DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
D GL HL GL L+ + AI+ +G+ GL L ++ L + GL L
Sbjct: 155 DAGLPHLSGLRRLSVVRLE-ETAISDKGLAFLEGLTTLRRVGLAGTSVSAQGLRFLSAQA 213
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
+LE L++ + TD + +L +L +S ++VTD+G+A L+ + LT
Sbjct: 214 ELEWLDL--SDTSTDDRVLAWVSGAHLHTLILSGTQVTDAGLARLRDMPHLT-------- 263
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+L L R L+D G + +L+ L+LG ++TD L+HL
Sbjct: 264 ----------------WLGLARTGLTDGGLAPIGALRALEALHLGETQVTDAGLLHLAES 307
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
+LE+L L + GL +L GL L+ L L DT++ + +RHL GL L + LS T
Sbjct: 308 KSLEALVLTKTRLHGPGLQHLAGLTRLELLHLDDTRLDDAAMRHLRGLVALRELELSRTL 367
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
I+ L L LS+L+ L + +T LA L LT LDL + A++ +
Sbjct: 368 ITGAGLASLDALSALERLGVSGLAVTADALAVLQKTERLTRLDLSHTPVGPEALAHVPS- 426
Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 455
LR L++ D + ++ LS L L ++ LTD L + LT L +L++S +
Sbjct: 427 -GLRELDLSRTAFNDEWLPSLRRLSRLQSLR-AERTLLTDLGLGQLGELTELAALHLSGT 484
Query: 456 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 490
+ +GL HL+ L +L L L + + A+ LQ
Sbjct: 485 LVNGSGLAHLQRLPHLAHLDLGATWLEAHYTPALQ 519
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 122/358 (34%), Positives = 180/358 (50%), Gaps = 11/358 (3%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
G+ L ++ LSG+ VTD+GL L+D +L L ++DGGL + L L +L
Sbjct: 235 GAHLHTLILSGTQVTDAGLARLRDMPHLTWLGLART-GLTDGGLAPIGALRALEALHLGE 293
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMK 174
+T G+ A +L L L + TR+HG GL +L GL +LE L++ + D+ M+
Sbjct: 294 TQ-VTDAGLLHLAESKSLEALVLTK-TRLHGPGLQHLAGLTRLELLHLD-DTRLDDAAMR 350
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L GL L+ L++S + +T +G+A L L L L + G VTA L L L L+
Sbjct: 351 HLRGLVALRELELSRTLITGAGLASLDALSALERLGVSGLAVTADALAVLQKTERLTRLD 410
Query: 235 LNRCQLSDDGCEKFSKIGS-LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
L+ + G E + + S L+ L+L DE L L+ L+ L+SL + + D GL
Sbjct: 411 LSHTPV---GPEALAHVPSGLRELDLSRTAFNDEWLPSLRRLSRLQSLRAERTLLTDLGL 467
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L L L L LS T V SGL HL L +L ++L T + L GL+ L L
Sbjct: 468 GQLGELTELAALHLSGTLVNGSGLAHLQRLPHLAHLDLGATWLEAHYTPALQGLTRLTWL 527
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
+L ++ D L L GL L L +TD+G LR+ +LR L++ G +TDA
Sbjct: 528 SLARGRLGDAALGHLPP--GLHTLYLTRTGVTDAGLDSLRSLPHLRQLDLRGTAVTDA 583
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 132/263 (50%), Gaps = 2/263 (0%)
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
SL L + L D + + L+L +TD L HL GL L + L+ I
Sbjct: 118 SLVTLRASGSSLGDAHLGALRDFTAWEALHLDGTRVTDAGLPHLSGLRRLSVVRLEETAI 177
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
D+GL L GL L+ + L+ T V + GLR LS LE ++LS T D L ++G +
Sbjct: 178 SDKGLAFLEGLTTLRRVGLAGTSVSAQGLRFLSAQAELEWLDLSDTSTDDRVLAWVSG-A 236
Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
L +L L Q+TD GLA L + LT L L +TD G A + + L +L + +
Sbjct: 237 HLHTLILSGTQVTDAGLARLRDMPHLTWLGLARTGLTDGGLAPIGALRALEALHLGETQV 296
Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 468
TDAG+ H+ + SL L L++ L L+ ++GLT L L++ ++R+ A +RHL+ L
Sbjct: 297 TDAGLLHLAESKSLEALVLTKT-RLHGPGLQHLAGLTRLELLHLDDTRLDDAAMRHLRGL 355
Query: 469 KNLRSLTLESCKVTANDIKRLQS 491
LR L L +T + L +
Sbjct: 356 VALRELELSRTLITGAGLASLDA 378
>gi|301118238|ref|XP_002906847.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262108196|gb|EEY66248.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 648
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 168/520 (32%), Positives = 250/520 (48%), Gaps = 69/520 (13%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIA-SQGSSLLSVDLSGSDV-TDSGLIH 76
LT+ S+E + + L + L V DK + ++ SQ +SL SV+L V +D G+
Sbjct: 153 LTDESVEQLANLSGLTSVALKGCYQVTDKSIKLLTESQSNSLTSVNLGYCKVVSDEGITA 212
Query: 77 LK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN--AITAQGMKAFAGLINL 133
+ + S L L+ C Q+ D G+ L L NL +L+ N A+T G+ A A + +L
Sbjct: 213 IASNLSKLNYLNLRGCSQVGDNGIRALARLKNLQTLNLWYCNQGALTDGGISALAEVTSL 272
Query: 134 VKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSK 191
L+L C+++ G+ +L L+KL L I +TD L+ L NL +L ++ C
Sbjct: 273 TSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVGEVTDQGFLALAPLVNLVTLDVAGCYN 332
Query: 192 VTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFS 249
+TD+G L KL NL C + A + +L + +LN +C +++D G +
Sbjct: 333 ITDAGTEVLVNFPKLASCNLWYCSEIGDATFQHMESLTKMRFLNFMKCGKVTDRGLRSIA 392
Query: 250 KIGSLKVLNLG--FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLE 306
K+ +L L++ FN +TDE L L L L+SL L C GI DEG+ L+ L +L L+
Sbjct: 393 KLRNLTSLDMVSCFN-VTDEGLNELSKLNRLKSLYLGGCSGIRDEGIAALSHLSSLVILD 451
Query: 307 LSD-TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL-DARQITDT 363
LS+ QVG+ L + L NL ++NL I D + LAGL+ LK+LNL + R +TD
Sbjct: 452 LSNCRQVGNKALLGIGALRNLTNLNLMRCNRIDDDGIAHLAGLTRLKTLNLANCRLLTDR 511
Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
+ +TGL L L+ LTDAG+ ++ L+ L
Sbjct: 512 ATKTVAQMTGLESLVLWYC-----------------------NKLTDAGILNLSTLTKLQ 548
Query: 424 LLNLSQNCNLTDKTLEL-------------------------ISGLTGLVSLNVSN-SRI 457
++L+ LTD +LE +S +T L SLN+S I
Sbjct: 549 SIDLASCSKLTDASLEAFLNMPNLTSLDLGNCCLLSDEGMLTLSKVTSLTSLNLSECGEI 608
Query: 458 TSAGLRHLKPLKNLRSLTLESC-KVTANDIKRL--QSRDL 494
T GL HLK L NL S+ L C KVT I L QS D
Sbjct: 609 TDTGLEHLKTLVNLSSVNLWYCTKVTPVGINFLPVQSVDF 648
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 109/198 (55%), Gaps = 24/198 (12%)
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG---ISDGSLRKL--AGLS 348
VNLTG C L+D V L +LSGLT++ + G ++D S++ L + +
Sbjct: 145 VNLTG-----CSSLTDESV--EQLANLSGLTSV-----ALKGCYQVTDKSIKLLTESQSN 192
Query: 349 SLKSLNLD-ARQITDTGLAALTS-LTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEIC- 404
SL S+NL + ++D G+ A+ S L+ L +L+L G +++ D+G L KNL++L +
Sbjct: 193 SLTSVNLGYCKVVSDEGITAIASNLSKLNYLNLRGCSQVGDNGIRALARLKNLQTLNLWY 252
Query: 405 --GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAG 461
G LTD G+ + +++SLT LNLS LTD+ + +S L L L ++N +T G
Sbjct: 253 CNQGALTDGGISALAEVTSLTSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVGEVTDQG 312
Query: 462 LRHLKPLKNLRSLTLESC 479
L PL NL +L + C
Sbjct: 313 FLALAPLVNLVTLDVAGC 330
>gi|290970571|ref|XP_002668179.1| predicted protein [Naegleria gruberi]
gi|284081412|gb|EFC35435.1| predicted protein [Naegleria gruberi]
Length = 592
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 125/450 (27%), Positives = 225/450 (50%), Gaps = 32/450 (7%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L SVD+SG+ + G + + L SL+ + I I G + + G+ +LTSL N
Sbjct: 135 LTSVDISGNRIGIEGAKSISEMKQLTSLNISNNI-IGVEGAKSISGMKHLTSLDI-SGNR 192
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
I +G+K+ + + L+ LD+ T + G G + + +L SL+I + N I K +
Sbjct: 193 IGDEGVKSISEMEQLISLDI--STNVIGGEGAKFISEMKQLTSLDI-FYNRIGGEGAKLI 249
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
S + L SL IS +++ G + +++LT LN+ G + + S+S + L LN++
Sbjct: 250 SEMKQLTSLNISTNEIDVEGSKLISEMKQLTSLNISGNLIGVEGVKSISGMKQLTSLNIS 309
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+ D+G + S++ L L++ N I DE + + + L S ++ + I DEG ++
Sbjct: 310 GNLIGDEGAKLISEMKQLTSLDIYNNRIGDEGVKSISEMKQLTSFDISNNLIYDEGAKSI 369
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
+G+ L L +S+ ++G G++ +S + L S+N+S I + ++G+ L SL +
Sbjct: 370 SGMKQLTSLTISNNRIGGEGVKFISEIKQLTSLNISKNEIDGEGAKFISGMKQLTSLTIY 429
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITD------------------------SGAAYL 392
I D G+ +++ + LT LD+ RI D GA ++
Sbjct: 430 KNGIGDEGVKSISEMKQLTSLDISNNRIGDEGVKSISEMEQLISLDISTNVIGGEGAKFI 489
Query: 393 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
K L SL+I G + D GVK I ++ LT LN+S N + + + IS + L SL++
Sbjct: 490 SEMKQLTSLDISGNLIYDEGVKSISEMKQLTSLNISGN-QIGVEGAKFISEMKQLTSLDI 548
Query: 453 SNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
S + I AG + + +K L SL + + +++
Sbjct: 549 SKNEIGDAGAKFISEMKQLTSLDVYANRIS 578
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 104/377 (27%), Positives = 192/377 (50%), Gaps = 3/377 (0%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L+S+D+S + + G + + L SLD F +I G + + + LTSL+
Sbjct: 202 SEMEQLISLDISTNVIGGEGAKFISEMKQLTSLDI-FYNRIGGEGAKLISEMKQLTSLNI 260
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K + + L L++ G+ ++ G+ +L SLNI N I D
Sbjct: 261 S-TNEIDVEGSKLISEMKQLTSLNISGNLIGVEGVKSISGMKQLTSLNIS-GNLIGDEGA 318
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL I +++ D G+ + +++LT ++ + S+S + L L
Sbjct: 319 KLISEMKQLTSLDIYNNRIGDEGVKSISEMKQLTSFDISNNLIYDEGAKSISGMKQLTSL 378
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
++ ++ +G + S+I L LN+ NEI E + G+ L SL + GIGDEG+
Sbjct: 379 TISNNRIGGEGVKFISEIKQLTSLNISKNEIDGEGAKFISGMKQLTSLTIYKNGIGDEGV 438
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
+++ + L L++S+ ++G G++ +S + L S+++S I + ++ + L SL
Sbjct: 439 KSISEMKQLTSLDISNNRIGDEGVKSISEMEQLISLDISTNVIGGEGAKFISEMKQLTSL 498
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
++ I D G+ +++ + LT L++ G +I GA ++ K L SL+I + DAG
Sbjct: 499 DISGNLIYDEGVKSISEMKQLTSLNISGNQIGVEGAKFISEMKQLTSLDISKNEIGDAGA 558
Query: 414 KHIKDLSSLTLLNLSQN 430
K I ++ LT L++ N
Sbjct: 559 KFISEMKQLTSLDVYAN 575
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/346 (27%), Positives = 173/346 (50%), Gaps = 11/346 (3%)
Query: 160 LNIKWCNCITDSDMKP--LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+N+K+ + D+ +P +SG+ L S+ IS +++ G + +++LT LN+ +
Sbjct: 111 VNVKFSSWTLDAFEQPKFISGMKQLTSVDISGNRIGIEGAKSISEMKQLTSLNISNNIIG 170
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
S+S + L L+++ ++ D+G + S++ L L++ N I E + +
Sbjct: 171 VEGAKSISGMKHLTSLDISGNRIGDEGVKSISEMEQLISLDISTNVIGGEGAKFISEMKQ 230
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L SL++ IG EG ++ + L L +S ++ G + +S + L S+N+S I
Sbjct: 231 LTSLDIFYNRIGGEGAKLISEMKQLTSLNISTNEIDVEGSKLISEMKQLTSLNISGNLIG 290
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
++ ++G+ L SLN+ I D G ++ + LT LD++ RI D G + K
Sbjct: 291 VEGVKSISGMKQLTSLNISGNLIGDEGAKLISEMKQLTSLDIYNNRIGDEGVKSISEMKQ 350
Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
L S +I + D G K I + LT L +S N + + ++ IS + L SLN+S + I
Sbjct: 351 LTSFDISNNLIYDEGAKSISGMKQLTSLTISNN-RIGGEGVKFISEIKQLTSLNISKNEI 409
Query: 458 TSAGLRHLKPLKNLRSLTL-------ESCKVTANDIKRLQSRDLPN 496
G + + +K L SLT+ E K + +++K+L S D+ N
Sbjct: 410 DGEGAKFISGMKQLTSLTIYKNGIGDEGVK-SISEMKQLTSLDISN 454
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 103/402 (25%), Positives = 194/402 (48%), Gaps = 24/402 (5%)
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK----------------GLMKL 157
+ + + Q K FA L +++L R ++ +VN+K G+ +L
Sbjct: 80 KERSKLVIQFKKKFA----LKRIELFRKSQFMNCIVNVKFSSWTLDAFEQPKFISGMKQL 135
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
S++I N I K +S + L SL IS + + G + G++ LT L++ G +
Sbjct: 136 TSVDIS-GNRIGIEGAKSISEMKQLTSLNISNNIIGVEGAKSISGMKHLTSLDISGNRIG 194
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
+ S+S + L L+++ + +G + S++ L L++ +N I E + +
Sbjct: 195 DEGVKSISEMEQLISLDISTNVIGGEGAKFISEMKQLTSLDIFYNRIGGEGAKLISEMKQ 254
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L SLN+ + I EG ++ + L L +S +G G++ +SG+ L S+N+S I
Sbjct: 255 LTSLNISTNEIDVEGSKLISEMKQLTSLNISGNLIGVEGVKSISGMKQLTSLNISGNLIG 314
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
D + ++ + L SL++ +I D G+ +++ + LT D+ I D GA + K
Sbjct: 315 DEGAKLISEMKQLTSLDIYNNRIGDEGVKSISEMKQLTSFDISNNLIYDEGAKSISGMKQ 374
Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
L SL I + GVK I ++ LT LN+S+N + + + ISG+ L SL + + I
Sbjct: 375 LTSLTISNNRIGGEGVKFISEIKQLTSLNISKN-EIDGEGAKFISGMKQLTSLTIYKNGI 433
Query: 458 TSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 499
G++ + +K L SL + + ++ +K + ++ L+S
Sbjct: 434 GDEGVKSISEMKQLTSLDISNNRIGDEGVKSIS--EMEQLIS 473
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 123/263 (46%), Gaps = 27/263 (10%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D+ + + D G+ + + L S D + + I D G + + G+ LTSL+
Sbjct: 322 SEMKQLTSLDIYNNRIGDEGVKSISEMKQLTSFDISNNL-IYDEGAKSISGMKQLTSLTI 380
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN I +G+K + + L L++ + G + G+ +L SL I + N I D +
Sbjct: 381 S-NNRIGGEGVKFISEIKQLTSLNISKNEIDGEGAKFISGMKQLTSLTI-YKNGIGDEGV 438
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIA------------------------YLKGLQKLTLL 209
K +S + L SL IS +++ D G+ ++ +++LT L
Sbjct: 439 KSISEMKQLTSLDISNNRIGDEGVKSISEMEQLISLDISTNVIGGEGAKFISEMKQLTSL 498
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
++ G + + S+S + L LN++ Q+ +G + S++ L L++ NEI D
Sbjct: 499 DISGNLIYDEGVKSISEMKQLTSLNISGNQIGVEGAKFISEMKQLTSLDISKNEIGDAGA 558
Query: 270 VHLKGLTNLESLNLDSCGIGDEG 292
+ + L SL++ + I DE
Sbjct: 559 KFISEMKQLTSLDVYANRISDEA 581
>gi|46447129|ref|YP_008494.1| hypothetical protein pc1495 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400770|emb|CAF24219.1| hypothetical protein pc1495 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 559
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 124/333 (37%), Positives = 177/333 (53%), Gaps = 32/333 (9%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E+LN +TD+ L NLK L +SC +TD +A+L L L LNL C
Sbjct: 226 EIEALNFSNNTYLTDAHFSALKDCKNLKVLHLVSCQAITDDRLAHLTPLTALQHLNLSKC 285
Query: 215 -PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVH 271
+T L L+ L +L +L+L+ C+ L+D G + + +L+ LNL GF ++TD LVH
Sbjct: 286 RKLTDTGLVHLTPLTALQHLDLSYCKNLTDAGLAHLTPLKALQHLNLRGFGKLTDAGLVH 345
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
L LT L+ L+L C NLT +GL HL+ LT L+ +NL
Sbjct: 346 LTPLTALQYLDLSWCK-------NLT----------------DAGLAHLTPLTGLQHLNL 382
Query: 332 S-FTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL-FGARITDSG 388
S + ++D L +L L++L+ L+L D +T GL LTSLT L HL L + +TD+G
Sbjct: 383 SGWYHLTDAGLARLIFLTALQHLDLSDCENLTSAGLERLTSLTALQHLGLSYCMNLTDAG 442
Query: 389 AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
+L L+ L + G LTDAG+ H+ L++L LNL NLTD L ++ LT L
Sbjct: 443 LIHLTPLTALQHLNLSGCFHLTDAGLVHLTPLTALQHLNLGGCENLTDAGLAYLTPLTAL 502
Query: 448 VSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 479
LN+S +T AGL HL L L+ L L C
Sbjct: 503 QHLNLSRCKHLTEAGLTHLASLTALQHLNLSYC 535
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 129/361 (35%), Positives = 185/361 (51%), Gaps = 33/361 (9%)
Query: 102 LRGLSN-LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMKLES 159
+ LSN + +L+F N +T A NL L L C I L +L L L+
Sbjct: 220 INHLSNEIEALNFSNNTYLTDAHFSALKDCKNLKVLHLVSCQAITDDRLAHLTPLTALQH 279
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVT 217
LN+ C +TD+ + L+ LT L+ L +S C +TD+G+A+L L+ L LNL G +T
Sbjct: 280 LNLSKCRKLTDTGLVHLTPLTALQHLDLSYCKNLTDAGLAHLTPLKALQHLNLRGFGKLT 339
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
A L L+ L +L YL+L+ C+ +TD L HL LT
Sbjct: 340 DAGLVHLTPLTALQYLDLSWCK-----------------------NLTDAGLAHLTPLTG 376
Query: 278 LESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-T 334
L+ LNL + D GL L L L+ L+LSD + + S+GL L+ LT L+ + LS+
Sbjct: 377 LQHLNLSGWYHLTDAGLARLIFLTALQHLDLSDCENLTSAGLERLTSLTALQHLGLSYCM 436
Query: 335 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYL 392
++D L L L++L+ LNL +TD GL LT LT L HL+L G +TD+G AYL
Sbjct: 437 NLTDAGLIHLTPLTALQHLNLSGCFHLTDAGLVHLTPLTALQHLNLGGCENLTDAGLAYL 496
Query: 393 RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
L+ L + LT+AG+ H+ L++L LNLS NLTD LE L ++L
Sbjct: 497 TPLTALQHLNLSRCKHLTEAGLTHLASLTALQHLNLSYCDNLTDAGLERFKALAASLNLK 556
Query: 452 V 452
+
Sbjct: 557 I 557
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 118/345 (34%), Positives = 181/345 (52%), Gaps = 36/345 (10%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL 77
LT+ A +DC L+ L L + D + + + ++L ++LS +TD+GL+HL
Sbjct: 238 LTDAHFSALKDCKNLKVLHLVSCQAITDDRLAHL-TPLTALQHLNLSKCRKLTDTGLVHL 296
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
+ LQ LD ++C ++D GL HL L L L+ R F L +
Sbjct: 297 TPLTALQHLDLSYCKNLTDAGLAHLTPLKALQHLNLR-----------GFGKLTD----- 340
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSG 196
GLV+L L L+ L++ WC +TD+ + L+ LT L+ L +S +TD+G
Sbjct: 341 --------AGLVHLTPLTALQYLDLSWCKNLTDAGLAHLTPLTGLQHLNLSGWYHLTDAG 392
Query: 197 IAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSL 254
+A L L L L+L C +T+A L+ L++L +L +L L+ C L+D G + + +L
Sbjct: 393 LARLIFLTALQHLDLSDCENLTSAGLERLTSLTALQHLGLSYCMNLTDAGLIHLTPLTAL 452
Query: 255 KVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQ 311
+ LNL G +TD LVHL LT L+ LNL C + D GL LT L L+ L LS
Sbjct: 453 QHLNLSGCFHLTDAGLVHLTPLTALQHLNLGGCENLTDAGLAYLTPLTALQHLNLSRCKH 512
Query: 312 VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL 355
+ +GL HL+ LT L+ +NLS+ ++D L + L++ SLNL
Sbjct: 513 LTEAGLTHLASLTALQHLNLSYCDNLTDAGLERFKALAA--SLNL 555
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/182 (42%), Positives = 108/182 (59%), Gaps = 9/182 (4%)
Query: 319 HLSGLT---NLESINL-SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTG 373
H S L NL+ ++L S I+D L L L++L+ LNL R++TDTGL LT LT
Sbjct: 242 HFSALKDCKNLKVLHLVSCQAITDDRLAHLTPLTALQHLNLSKCRKLTDTGLVHLTPLTA 301
Query: 374 LTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNC 431
L HLDL + +TD+G A+L K L+ L + G G LTDAG+ H+ L++L L+LS
Sbjct: 302 LQHLDLSYCKNLTDAGLAHLTPLKALQHLNLRGFGKLTDAGLVHLTPLTALQYLDLSWCK 361
Query: 432 NLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK-VTANDIKRL 489
NLTD L ++ LTGL LN+S +T AGL L L L+ L L C+ +T+ ++RL
Sbjct: 362 NLTDAGLAHLTPLTGLQHLNLSGWYHLTDAGLARLIFLTALQHLDLSDCENLTSAGLERL 421
Query: 490 QS 491
S
Sbjct: 422 TS 423
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
++L ++L G ++TD+GL +L + LQ L+ + C +++ GL HL L+ L L+
Sbjct: 475 TALQHLNLGGCENLTDAGLAYLTPLTALQHLNLSRCKHLTEAGLTHLASLTALQHLNLSY 534
Query: 116 NNAITAQGMKAFAGLINLVKLDLER 140
+ +T G++ F L + L + R
Sbjct: 535 CDNLTDAGLERFKALAASLNLKIIR 559
>gi|46447562|ref|YP_008927.1| hypothetical protein pc1928 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401203|emb|CAF24652.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 528
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 122/345 (35%), Positives = 187/345 (54%), Gaps = 36/345 (10%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
+ +TD+ LK+C NL++L F C ++D GL HL+ L+ L L+
Sbjct: 203 ENTHLTDAHFSVLKECKNLKALHFEACQILTDAGLAHLKPLTALQHLNL----------- 251
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
+G +L + GL +L L L+ L++ C TD + L+ LT L+
Sbjct: 252 ---SGCYHLTDV----------GLAHLTFLTGLQHLDLSQCWHFTDDGLAHLTSLTALQY 298
Query: 185 LQ-ISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LS 241
L + C + D+G+A+LK L L LNL GC +T A L L+ L L +LNL++C+ L+
Sbjct: 299 LALMGCKNLIDAGLAHLKPLTSLQHLNLRGCGYLTDAGLAHLAPLTGLQHLNLSKCENLT 358
Query: 242 DDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGL 299
D G + +L+ LNL ++TD+ L HL +TNL+ L+L C + D GL +LT L
Sbjct: 359 DVGLAHLRLLVALQYLNLDNCRKLTDDGLAHLTPVTNLQHLDLSQCWHLTDIGLAHLTPL 418
Query: 300 CNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-D 356
+L+ L+LS + + GL HL+ LT L+ ++LS+ ++D L L L++L+ L+L
Sbjct: 419 KSLQHLDLSRCENLTDDGLVHLTPLTALQHLDLSYCYNLTDDGLAHLTPLTTLQHLDLMG 478
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRS 400
+ +TD GLA LT L L +LDL G + TD G A FKNL +
Sbjct: 479 CKNLTDDGLAHLTPLIALQYLDLIGCKNFTDDGLA---RFKNLAA 520
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 126/339 (37%), Positives = 182/339 (53%), Gaps = 32/339 (9%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
+++ LN +TD+ L NLK+L +C +TD+G+A+LK L L LNL GC
Sbjct: 195 EIKKLNFSENTHLTDAHFSVLKECKNLKALHFEACQILTDAGLAHLKPLTALQHLNLSGC 254
Query: 215 -PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVH 271
+T L L+ L L +L+L++C +DDG + + +L+ L L G + D L H
Sbjct: 255 YHLTDVGLAHLTFLTGLQHLDLSQCWHFTDDGLAHLTSLTALQYLALMGCKNLIDAGLAH 314
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
LK LT+L+ LNL CG L+D +GL HL+ LT L+ +NL
Sbjct: 315 LKPLTSLQHLNLRGCGY------------------LTD-----AGLAHLAPLTGLQHLNL 351
Query: 332 SF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGA-RITDSG 388
S ++D L L L +L+ LNLD R++TD GLA LT +T L HLDL +TD G
Sbjct: 352 SKCENLTDVGLAHLRLLVALQYLNLDNCRKLTDDGLAHLTPVTNLQHLDLSQCWHLTDIG 411
Query: 389 AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
A+L K+L+ L++ LTD G+ H+ L++L L+LS NLTD L ++ LT L
Sbjct: 412 LAHLTPLKSLQHLDLSRCENLTDDGLVHLTPLTALQHLDLSYCYNLTDDGLAHLTPLTTL 471
Query: 448 VSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCKVTAND 485
L++ + +T GL HL PL L+ L L CK +D
Sbjct: 472 QHLDLMGCKNLTDDGLAHLTPLIALQYLDLIGCKNFTDD 510
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 123/356 (34%), Positives = 173/356 (48%), Gaps = 32/356 (8%)
Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN 166
+ L+F N +T NL L E C + GL +LK L L+ LN+ C
Sbjct: 196 IKKLNFSENTHLTDAHFSVLKECKNLKALHFEACQILTDAGLAHLKPLTALQHLNLSGCY 255
Query: 167 CITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSL 224
+TD + L+ LT L+ L +S C TD G+A+L L L L L GC + A L L
Sbjct: 256 HLTDVGLAHLTFLTGLQHLDLSQCWHFTDDGLAHLTSLTALQYLALMGCKNLIDAGLAHL 315
Query: 225 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLN 282
L SL +LNL C L+D G + + L+ LNL E +TD L HL+ L L+ LN
Sbjct: 316 KPLTSLQHLNLRGCGYLTDAGLAHLAPLTGLQHLNLSKCENLTDVGLAHLRLLVALQYLN 375
Query: 283 LDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
LD+C + D+GL +LT + NL+ L+LS + GL HL+ L +L+ ++LS
Sbjct: 376 LDNCRKLTDDGLAHLTPVTNLQHLDLSQCWHLTDIGLAHLTPLKSLQHLDLS-------- 427
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLR 399
+TD GL LT LT L HLDL + +TD G A+L L+
Sbjct: 428 ---------------RCENLTDDGLVHLTPLTALQHLDLSYCYNLTDDGLAHLTPLTTLQ 472
Query: 400 SLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
L++ G LTD G+ H+ L +L L+L N TD L L ++L + N
Sbjct: 473 HLDLMGCKNLTDDGLAHLTPLIALQYLDLIGCKNFTDDGLARFKNLAASLNLTIIN 528
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 109/202 (53%), Gaps = 5/202 (2%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
+SL ++L G +TD+GL HL + LQ L+ + C ++D GL HLR L L L+
Sbjct: 319 TSLQHLNLRGCGYLTDAGLAHLAPLTGLQHLNLSKCENLTDVGLAHLRLLVALQYLNLDN 378
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMK 174
+T G+ + NL LDL +C + GL +L L L+ L++ C +TD +
Sbjct: 379 CRKLTDDGLAHLTPVTNLQHLDLSQCWHLTDIGLAHLTPLKSLQHLDLSRCENLTDDGLV 438
Query: 175 PLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFY 232
L+ LT L+ L +S C +TD G+A+L L L L+L GC +T L L+ L +L Y
Sbjct: 439 HLTPLTALQHLDLSYCYNLTDDGLAHLTPLTTLQHLDLMGCKNLTDDGLAHLTPLIALQY 498
Query: 233 LNLNRCQ-LSDDGCEKFSKIGS 253
L+L C+ +DDG +F + +
Sbjct: 499 LDLIGCKNFTDDGLARFKNLAA 520
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 73/147 (49%), Gaps = 5/147 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD GL HL +NLQ LD + C ++D GL HL L +L L R +T G+
Sbjct: 382 LTDDGLAHLTPVTNLQHLDLSQCWHLTDIGLAHLTPLKSLQHLDLSRCENLTDDGLVHLT 441
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ- 186
L L LDL C + GL +L L L+ L++ C +TD + L+ L L+ L
Sbjct: 442 PLTALQHLDLSYCYNLTDDGLAHLTPLTTLQHLDLMGCKNLTDDGLAHLTPLIALQYLDL 501
Query: 187 ISCSKVTDSGIAYLKGLQ---KLTLLN 210
I C TD G+A K L LT++N
Sbjct: 502 IGCKNFTDDGLARFKNLAASLNLTIIN 528
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
SL +DLS ++TD GL+HL + LQ LD ++C ++D GL HL L+ L L
Sbjct: 420 SLQHLDLSRCENLTDDGLVHLTPLTALQHLDLSYCYNLTDDGLAHLTPLTTLQHLDLMGC 479
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN 166
+T G+ LI L LDL C GL K L SLN+ N
Sbjct: 480 KNLTDDGLAHLTPLIALQYLDLIGCKNFTDDGLARFKNLAA--SLNLTIIN 528
>gi|168705463|ref|ZP_02737740.1| leucine-rich repeat domain protein [Gemmata obscuriglobus UQM 2246]
Length = 362
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 169/301 (56%), Gaps = 3/301 (0%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+TD+D+K L+ LT L L +S + VTD+G+ +L L KLT LNL G +T A L+
Sbjct: 53 KTVTDADLKALAPLTGLTDLDLSSTPVTDAGLKHLAPLTKLTALNLGGTKITDAGPTELA 112
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L L LNL+ Q++D G ++ +++ +L L+L +T+ L HL LT + SL+L
Sbjct: 113 PLAVLTDLNLSSTQVTDAGLKEVARLRTLVALDLSHTGVTNAGLGHLT-LTKMRSLSLRG 171
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
I D GL + + ++ L+LS T + GL+ L + ++LS T ++ L++LA
Sbjct: 172 TKITDGGLREIR-IMSVSGLDLSGTALTDEGLKDLGLFEEITGLDLSDTKVTSNGLKELA 230
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
+LK L+L ++ D GL L L L L L G +T +G L + LR LE+ G
Sbjct: 231 SQPTLKFLSLSRTKVGDAGLKHLAPLKRLESLYLNGTGVTGTGVKELAPLERLRILELTG 290
Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
+T G+KH+ L L +L LS + +TD+ L+ I+ L L++L++ +++T AG+ L
Sbjct: 291 TMVTGGGLKHLSTLPRLAILRLS-DAAVTDEGLKDIAHLKTLLALDLYRTKVTGAGVAEL 349
Query: 466 K 466
+
Sbjct: 350 R 350
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 102/303 (33%), Positives = 155/303 (51%), Gaps = 3/303 (0%)
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
R +T +KA A L L LDL GL +L L KL +LN+ ITD+
Sbjct: 51 RGKTVTDADLKALAPLTGLTDLDLSSTPVTDAGLKHLAPLTKLTALNLGGTK-ITDAGPT 109
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L+ L L L +S ++VTD+G+ + L+ L L+L VT A L L+ L + L+
Sbjct: 110 ELAPLAVLTDLNLSSTQVTDAGLKEVARLRTLVALDLSHTGVTNAGLGHLT-LTKMRSLS 168
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
L +++D G + +I S+ L+L +TDE L L + L+L + GL
Sbjct: 169 LRGTKITDGGLREI-RIMSVSGLDLSGTALTDEGLKDLGLFEEITGLDLSDTKVTSNGLK 227
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
L LK L LS T+VG +GL+HL+ L LES+ L+ TG++ +++LA L L+ L
Sbjct: 228 ELASQPTLKFLSLSRTKVGDAGLKHLAPLKRLESLYLNGTGVTGTGVKELAPLERLRILE 287
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
L +T GL L++L L L L A +TD G + + K L +L++ +T AGV
Sbjct: 288 LTGTMVTGGGLKHLSTLPRLAILRLSDAAVTDEGLKDIAHLKTLLALDLYRTKVTGAGVA 347
Query: 415 HIK 417
++
Sbjct: 348 ELR 350
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 98/312 (31%), Positives = 157/312 (50%), Gaps = 29/312 (9%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L +DLS + VTD+GL HL + L +L+ +I+D G L L+ LT L+ +
Sbjct: 67 TGLTDLDLSSTPVTDAGLKHLAPLTKLTALNLGGT-KITDAGPTELAPLAVLTDLNL-SS 124
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T G+K A L LV LDL H G+ N GL L
Sbjct: 125 TQVTDAGLKEVARLRTLVALDLS-----HTGVTN-AGLGHLT------------------ 160
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
LT ++SL + +K+TD G+ ++ + ++ L+L G +T L L + L+L+
Sbjct: 161 --LTKMRSLSLRGTKITDGGLREIR-IMSVSGLDLSGTALTDEGLKDLGLFEEITGLDLS 217
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+++ +G ++ + +LK L+L ++ D L HL L LESL L+ G+ G+ L
Sbjct: 218 DTKVTSNGLKELASQPTLKFLSLSRTKVGDAGLKHLAPLKRLESLYLNGTGVTGTGVKEL 277
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
L L+ LEL+ T V GL+HLS L L + LS ++D L+ +A L +L +L+L
Sbjct: 278 APLERLRILELTGTMVTGGGLKHLSTLPRLAILRLSDAAVTDEGLKDIAHLKTLLALDLY 337
Query: 357 ARQITDTGLAAL 368
++T G+A L
Sbjct: 338 RTKVTGAGVAEL 349
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 104/315 (33%), Positives = 155/315 (49%), Gaps = 28/315 (8%)
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
+T + L G VT A L +L+ L L L+L+ ++D G + + + L LNLG +IT
Sbjct: 45 VTHVMLRGKTVTDADLKALAPLTGLTDLDLSSTPVTDAGLKHLAPLTKLTALNLGGTKIT 104
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
D L L L LNL S + D GL + L L L+LS T V ++GL HL+ LT
Sbjct: 105 DAGPTELAPLAVLTDLNLSSTQVTDAGLKEVARLRTLVALDLSHTGVTNAGLGHLT-LTK 163
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
+ S++L T I+DG LR++ + S+ L+L +TD GL L +T LDL ++T
Sbjct: 164 MRSLSLRGTKITDGGLREIR-IMSVSGLDLSGTALTDEGLKDLGLFEEITGLDLSDTKVT 222
Query: 386 ------------------------DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421
D+G +L K L SL + G G+T GVK + L
Sbjct: 223 SNGLKELASQPTLKFLSLSRTKVGDAGLKHLAPLKRLESLYLNGTGVTGTGVKELAPLER 282
Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
L +L L+ +T L+ +S L L L +S++ +T GL+ + LK L +L L KV
Sbjct: 283 LRILELT-GTMVTGGGLKHLSTLPRLAILRLSDAAVTDEGLKDIAHLKTLLALDLYRTKV 341
Query: 482 TANDIKRLQSRDLPN 496
T + L+ + LP
Sbjct: 342 TGAGVAELR-KALPR 355
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 143/274 (52%), Gaps = 5/274 (1%)
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
G + ++ L ++D + + + L L+L +TD L HL LT L +LNL
Sbjct: 43 GVVTHVMLRGKTVTDADLKALAPLTGLTDLDLSSTPVTDAGLKHLAPLTKLTALNLGGTK 102
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
I D G L L L L LS TQV +GL+ ++ L L +++LS TG+++ L L L
Sbjct: 103 ITDAGPTELAPLAVLTDLNLSSTQVTDAGLKEVARLRTLVALDLSHTGVTNAGLGHLT-L 161
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
+ ++SL+L +ITD GL + ++ ++ LDL G +TD G L F+ + L++
Sbjct: 162 TKMRSLSLRGTKITDGGLREIRIMS-VSGLDLSGTALTDEGLKDLGLFEEITGLDLSDTK 220
Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 467
+T G+K + +L L+LS+ + D L+ ++ L L SL ++ + +T G++ L P
Sbjct: 221 VTSNGLKELASQPTLKFLSLSR-TKVGDAGLKHLAPLKRLESLYLNGTGVTGTGVKELAP 279
Query: 468 LKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 501
L+ LR L L VT +K L + LP L R
Sbjct: 280 LERLRILELTGTMVTGGGLKHLST--LPRLAILR 311
>gi|168701995|ref|ZP_02734272.1| hypothetical protein GobsU_20883 [Gemmata obscuriglobus UQM 2246]
Length = 684
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 140/487 (28%), Positives = 212/487 (43%), Gaps = 57/487 (11%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L + L G+ VTD+GL HLK SNL L+ + ++D GL L LTSL + +
Sbjct: 64 ALTRIILHGTKVTDAGLAHLKGLSNLAHLNLAYS-GVTDAGLADLNAFPLLTSL-WVQGT 121
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
++ G+ L L +DL GL +LK + +TD+++ L
Sbjct: 122 TVSDAGLAVARELPALTHIDLSGTKVTGPGLAHLK--GLKGLTLLLSGTALTDANLCYLK 179
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS----------AL 227
GLT + L +S + +TD+G+++L L+ L L++ T A L L +
Sbjct: 180 GLTGVVELSLSDTPLTDAGLSHLHDLKALGTLDVRKTRATPASLAELHKSVPGCRIRDSA 239
Query: 228 GSLFYLNLNRC------------------------------------------QLSDDGC 245
G L++NR + DD
Sbjct: 240 GDRPPLDVNRLAAEWVLSVGGSVGVSGQPRDIRAAADLPQGPLALARVNLSDRSVKDDDL 299
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
+ + L L L +TD L +LK L L+ L+L + D GL + +L L
Sbjct: 300 GRLAGCTGLTELVLHETRVTDAALGYLKNLARLQFLSLTGTDVTDAGLARIRERKSLTTL 359
Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
LS T+V ++GL HL+GL L I+L TG+SD L L GL+ LK+L L ++ GL
Sbjct: 360 HLSSTKVTNAGLVHLAGLAGLSHIHLDGTGVSDAGLVHLKGLTDLKTLGLSRTRVLGPGL 419
Query: 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
A S L L L +TD A+L LR L G GLTDAG+ H++ L+ L L
Sbjct: 420 AHTHSWKRLDALYLTNTGVTDEAFAHLSPHHTLRHLGADGTGLTDAGMAHVRHLTGLISL 479
Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 485
NLS + D L + G L V N+++T GL R++T + ++ +
Sbjct: 480 NLSDTA-VGDAGLMQLGSNAGPTHLTVRNTKVTLRGLHAFHATGPWRTVTWDGGQLGPTE 538
Query: 486 IKRLQSR 492
R +R
Sbjct: 539 ADRSAAR 545
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 154/563 (27%), Positives = 224/563 (39%), Gaps = 138/563 (24%)
Query: 30 DCALQDLCLGQYPGVNDKWMD---------VIASQGSSLLSVDLSGSDVTDSGLIHLKDC 80
D L DL +P + W+ +A + +L +DLSG+ VT GL HLK
Sbjct: 101 DAGLADL--NAFPLLTSLWVQGTTVSDAGLAVARELPALTHIDLSGTKVTGPGLAHLKGL 158
Query: 81 -------SNLQSLDFNFCI---------------QISDGGLEHLRGLSNLTSLSFRRNNA 118
S D N C ++D GL HL L L +L R+ A
Sbjct: 159 KGLTLLLSGTALTDANLCYLKGLTGVVELSLSDTPLTDAGLSHLHDLKALGTLDVRKTRA 218
Query: 119 ITA---------QGMKAFAGLINLVKLDLERCTR------------------IHGGLVNL 151
A G + + LD+ R I
Sbjct: 219 TPASLAELHKSVPGCRIRDSAGDRPPLDVNRLAAEWVLSVGGSVGVSGQPRDIRAAADLP 278
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
+G + L +N+ + D D+ L+G T L L + ++VTD+ + YLK L +L L+L
Sbjct: 279 QGPLALARVNLS-DRSVKDDDLGRLAGCTGLTELVLHETRVTDAALGYLKNLARLQFLSL 337
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
G VT D G + + SL L+L ++T+ LVH
Sbjct: 338 TGTDVT------------------------DAGLARIRERKSLTTLHLSSTKVTNAGLVH 373
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
L GL L ++LD G+ D GLV+L GL +LK L LS T+V GL H L+++ L
Sbjct: 374 LAGLAGLSHIHLDGTGVSDAGLVHLKGLTDLKTLGLSRTRVLGPGLAHTHSWKRLDALYL 433
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
+ TG++D + L+ +L+ L D +TD G+A + LTGL L+L + D+G
Sbjct: 434 TNTGVTDEAFAHLSPHHTLRHLGADGTGLTDAGMAHVRHLTGLISLNLSDTAVGDAGLMQ 493
Query: 392 L-----------RNFK-NLRSLE--------------------------------ICGGG 407
L RN K LR L GG
Sbjct: 494 LGSNAGPTHLTVRNTKVTLRGLHAFHATGPWRTVTWDGGQLGPTEADRSAARWALAAGGR 553
Query: 408 LTDAGVKH--------IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L +GV + K +T L L+ ++D L + LTG+ L+++ S IT+
Sbjct: 554 LRVSGVPNEIVAAGELPKRKFVVTELALN-GLAVSDTELAALKYLTGMSRLDLAGSAITN 612
Query: 460 AGLRHLKPLKNLRSLTLESCKVT 482
GL HLK L LR L L +VT
Sbjct: 613 DGLAHLKGLTGLRRLGLSETRVT 635
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 109/368 (29%), Positives = 167/368 (45%), Gaps = 54/368 (14%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+ D+D+ L L + + +KVTD+G+A+LKGL L LNL VT A L L+
Sbjct: 49 RAVADADLARLKDCQALTRIILHGTKVTDAGLAHLKGLSNLAHLNLAYSGVTDAGLADLN 108
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
A L L + +SD G ++ +L ++L ++T L HLK +L L
Sbjct: 109 AFPLLTSLWVQGTTVSDAGLAVARELPALTHIDLSGTKVTGPGLAHLK-GLKGLTLLLSG 167
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL- 344
+ D L L GL + L LSDT + +GL HL L L ++++ T + SL +L
Sbjct: 168 TALTDANLCYLKGLTGVVELSLSDTPLTDAGLSHLHDLKALGTLDVRKTRATPASLAELH 227
Query: 345 ---------------------------------------------------AGLSSLKSL 353
G +L +
Sbjct: 228 KSVPGCRIRDSAGDRPPLDVNRLAAEWVLSVGGSVGVSGQPRDIRAAADLPQGPLALARV 287
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
NL R + D L L TGLT L L R+TD+ YL+N L+ L + G +TDAG+
Sbjct: 288 NLSDRSVKDDDLGRLAGCTGLTELVLHETRVTDAALGYLKNLARLQFLSLTGTDVTDAGL 347
Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 473
I++ SLT L+LS + +T+ L ++GL GL +++ + ++ AGL HLK L +L++
Sbjct: 348 ARIRERKSLTTLHLS-STKVTNAGLVHLAGLAGLSHIHLDGTGVSDAGLVHLKGLTDLKT 406
Query: 474 LTLESCKV 481
L L +V
Sbjct: 407 LGLSRTRV 414
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 102/213 (47%), Gaps = 26/213 (12%)
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L + +L + D L L L + L T+V +GL HL GL+NL +NL+++G++
Sbjct: 41 LTAADLTDRAVADADLARLKDCQALTRIILHGTKVTDAGLAHLKGLSNLAHLNLAYSGVT 100
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
D L L L SL + ++D GLA L LTH+DL G ++T G A+L
Sbjct: 101 DAGLADLNAFPLLTSLWVQGTTVSDAGLAVARELPALTHIDLSGTKVTGPGLAHL-KGLK 159
Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
+L + G LTDA + ++K GLTG+V L++S++ +
Sbjct: 160 GLTLLLSGTALTDANLCYLK-------------------------GLTGVVELSLSDTPL 194
Query: 458 TSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 490
T AGL HL LK L +L + + T + L
Sbjct: 195 TDAGLSHLHDLKALGTLDVRKTRATPASLAELH 227
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 93/339 (27%), Positives = 141/339 (41%), Gaps = 54/339 (15%)
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L + ++ V D+ +A LK Q LT + L G VT A L L L +L +LNL
Sbjct: 41 LTAADLTDRAVADADLARLKDCQALTRIILHGTKVTDAGLAHLKGLSNLAHLNL------ 94
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
++ +TD L L L SL + + D GL L
Sbjct: 95 ------------------AYSGVTDAGLADLNAFPLLTSLWVQGTTVSDAGLAVARELPA 136
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
L ++LS T+V GL HL ++ LS T ++D +L L GL+ + L+L +T
Sbjct: 137 LTHIDLSGTKVTGPGLAHLK-GLKGLTLLLSGTALTDANLCYLKGLTGVVELSLSDTPLT 195
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEICG--------------- 405
D GL+ L L L LD+ R T + A L ++ R + G
Sbjct: 196 DAGLSHLHDLKALGTLDVRKTRATPASLAELHKSVPGCRIRDSAGDRPPLDVNRLAAEWV 255
Query: 406 --------GGLTDAGVKHIKDLS----SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
++ DL +L +NLS ++ D L ++G TGL L +
Sbjct: 256 LSVGGSVGVSGQPRDIRAAADLPQGPLALARVNLSDR-SVKDDDLGRLAGCTGLTELVLH 314
Query: 454 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 492
+R+T A L +LK L L+ L+L VT + R++ R
Sbjct: 315 ETRVTDAALGYLKNLARLQFLSLTGTDVTDAGLARIRER 353
>gi|46446776|ref|YP_008141.1| hypothetical protein pc1142 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400417|emb|CAF23866.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 590
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 128/348 (36%), Positives = 190/348 (54%), Gaps = 13/348 (3%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L + +T++ L+ LKDC N++ L F C ++D GL HL L+ L L +T G
Sbjct: 233 LENTHLTNAHLLALKDCKNVKVLYFKKCRDVTDAGLAHLTPLTALQHLGLSDCENLTDAG 292
Query: 124 MKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
+ L L LDL C + GLV+L L+ L+ L + C +T + + L+ LT L
Sbjct: 293 LAHLTTLTALQHLDLSGCWNLTDSGLVHLTPLVGLQHLGLSDCENLTVAGLAHLTSLTAL 352
Query: 183 KSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-Q 239
+ L + +C +TD+G+A+L L L L+L C +T A L L+ L +L +LNL C +
Sbjct: 353 QHLDLRNCYNLTDAGLAHLTPLTALQHLDLSCCYNLTDAGLAHLTPLTALQHLNLCCCRK 412
Query: 240 LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT 297
L+D G + + +L+ L+L + +TD L HL LT L LNL C + GL +LT
Sbjct: 413 LTDAGLAHLTPLTALQHLDLSYCYNLTDAGLAHLTPLTALLHLNLSECWKLTGAGLAHLT 472
Query: 298 GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL 355
L L+ L LS + +GL HL+ LT L+ +NLS+ +D L L L++L+SL+L
Sbjct: 473 PLVALQHLNLSKCNNLTDAGLVHLAPLTALQHLNLSWCKKFTDAGLAHLTLLTALQSLDL 532
Query: 356 -DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSL 401
+TD GL LT LT L +LDL G + +TD+G L FK L +L
Sbjct: 533 IGCNNLTDAGLVHLTPLTALQYLDLIGCKNLTDAG---LERFKTLAAL 577
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 152/481 (31%), Positives = 235/481 (48%), Gaps = 36/481 (7%)
Query: 3 PRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSV 62
P ++Q+ F L+ CLT E + + Y G+ + ++ S
Sbjct: 107 PLALTQKDFTLLL--NCLTNPKFEISLEEISSSIQFADYYGLTEVVKNLEEQLIDGYKSQ 164
Query: 63 DLSGSDVTDSGLIHLKDCSNLQS----------LDF-------NFCIQISDGG--LEHLR 103
+ T+ L+ LK+ N L+F N IQ+S+ + HL
Sbjct: 165 RFESFNSTEESLVELKELLNFAHRYQLNILRNYLEFTVVSALLNQTIQLSEFERIINHLS 224
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNI 162
+ + +L+F N +T + A N+ L ++C + GL +L L L+ L +
Sbjct: 225 --NKIEALNFLENTHLTNAHLLALKDCKNVKVLYFKKCRDVTDAGLAHLTPLTALQHLGL 282
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAAC 220
C +TD+ + L+ LT L+ L +S C +TDSG+ +L L L L L C +T A
Sbjct: 283 SDCENLTDAGLAHLTTLTALQHLDLSGCWNLTDSGLVHLTPLVGLQHLGLSDCENLTVAG 342
Query: 221 LDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLG--FNEITDECLVHLKGLTN 277
L L++L +L +L+L C L+D G + + +L+ L+L +N +TD L HL LT
Sbjct: 343 LAHLTSLTALQHLDLRNCYNLTDAGLAHLTPLTALQHLDLSCCYN-LTDAGLAHLTPLTA 401
Query: 278 LESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-T 334
L+ LNL C + D GL +LT L L+ L+LS + +GL HL+ LT L +NLS
Sbjct: 402 LQHLNLCCCRKLTDAGLAHLTPLTALQHLDLSYCYNLTDAGLAHLTPLTALLHLNLSECW 461
Query: 335 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYL 392
++ L L L +L+ LNL +TD GL L LT L HL+L + + TD+G A+L
Sbjct: 462 KLTGAGLAHLTPLVALQHLNLSKCNNLTDAGLVHLAPLTALQHLNLSWCKKFTDAGLAHL 521
Query: 393 RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
L+SL++ G LTDAG+ H+ L++L L+L NLTD LE L L +L
Sbjct: 522 TLLTALQSLDLIGCNNLTDAGLVHLTPLTALQYLDLIGCKNLTDAGLERFKTLAALPNLT 581
Query: 452 V 452
+
Sbjct: 582 I 582
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 131/356 (36%), Positives = 194/356 (54%), Gaps = 13/356 (3%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 214
K+E+LN +T++ + L N+K L C VTD+G+A+L L L L L C
Sbjct: 226 KIEALNFLENTHLTNAHLLALKDCKNVKVLYFKKCRDVTDAGLAHLTPLTALQHLGLSDC 285
Query: 215 P-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVH 271
+T A L L+ L +L +L+L+ C L+D G + + L+ L L E +T L H
Sbjct: 286 ENLTDAGLAHLTTLTALQHLDLSGCWNLTDSGLVHLTPLVGLQHLGLSDCENLTVAGLAH 345
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESI 329
L LT L+ L+L +C + D GL +LT L L+ L+LS + +GL HL+ LT L+ +
Sbjct: 346 LTSLTALQHLDLRNCYNLTDAGLAHLTPLTALQHLDLSCCYNLTDAGLAHLTPLTALQHL 405
Query: 330 NLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA-RITD 386
NL ++D L L L++L+ L+L +TD GLA LT LT L HL+L ++T
Sbjct: 406 NLCCCRKLTDAGLAHLTPLTALQHLDLSYCYNLTDAGLAHLTPLTALLHLNLSECWKLTG 465
Query: 387 SGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 445
+G A+L L+ L + LTDAG+ H+ L++L LNLS TD L ++ LT
Sbjct: 466 AGLAHLTPLVALQHLNLSKCNNLTDAGLVHLAPLTALQHLNLSWCKKFTDAGLAHLTLLT 525
Query: 446 GLVSLN-VSNSRITSAGLRHLKPLKNLRSLTLESCK-VTANDIKRLQS-RDLPNLV 498
L SL+ + + +T AGL HL PL L+ L L CK +T ++R ++ LPNL
Sbjct: 526 ALQSLDLIGCNNLTDAGLVHLTPLTALQYLDLIGCKNLTDAGLERFKTLAALPNLT 581
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+++TD+GL+HL + LQ L+ ++C + +D GL HL L+ L SL N +T G+
Sbjct: 486 NNLTDAGLVHLAPLTALQHLNLSWCKKFTDAGLAHLTLLTALQSLDLIGCNNLTDAGLVH 545
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIK 163
L L LDL C + GL K L L +L IK
Sbjct: 546 LTPLTALQYLDLIGCKNLTDAGLERFKTLAALPNLTIK 583
>gi|168701031|ref|ZP_02733308.1| leucine-rich repeat domain protein [Gemmata obscuriglobus UQM 2246]
Length = 389
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 144/289 (49%), Gaps = 23/289 (7%)
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
T A L LS L LNL Q++D + ++ L VLN+ + +ITDE L + GLT
Sbjct: 55 TDAGLKELSLFAGLTNLNLTNTQVTDAALKDVARFPKLTVLNVSYTQITDEGLREIAGLT 114
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
L L LD + GL +L L L+ L L V +GLR L G+ L ++L T +
Sbjct: 115 ELTDLVLDYTKVSGSGLKHLAALTKLRTLSLGSKIVTDAGLRGLVGVRGLRQLDLRETSV 174
Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
+D L+++A LS LK+L L +T GL L LT L L L G RIT G + L K
Sbjct: 175 TDAGLKEIAPLSELKTLMLVNAPVTGPGLKDLALLTKLQFLFLSGTRITGDGLSELTGLK 234
Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ-----------------------NCNL 433
+LR LE+ G LTDAG+K + +L L LS + +
Sbjct: 235 SLRLLELGGTPLTDAGLKQLAGFDTLGHLGLSNTKVTGAGLKELAALKQLSGLDLGSTKI 294
Query: 434 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
TD L+ I+ LT L L + ++ +T AG+R+L PL LR L L KVT
Sbjct: 295 TDADLKEIAALTNLTGLTMRDTPVTDAGVRNLAPLTKLRRLNLTHTKVT 343
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 107/337 (31%), Positives = 175/337 (51%), Gaps = 2/337 (0%)
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
+++ TD+ +K LS L +L ++ ++VTD+ + + KLT+LN+ +T
Sbjct: 46 VDLSGAKTFTDAGLKELSLFAGLTNLNLTNTQVTDAALKDVARFPKLTVLNVSYTQITDE 105
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
L ++ L L L L+ ++S G + + + L+ L+LG +TD L L G+ L
Sbjct: 106 GLREIAGLTELTDLVLDYTKVSGSGLKHLAALTKLRTLSLGSKIVTDAGLRGLVGVRGLR 165
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L+L + D GL + L LK L L + V GL+ L+ LT L+ + LS T I+
Sbjct: 166 QLDLRETSVTDAGLKEIAPLSELKTLMLVNAPVTGPGLKDLALLTKLQFLFLSGTRITGD 225
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L +L GL SL+ L L +TD GL L L HL L ++T +G L K L
Sbjct: 226 GLSELTGLKSLRLLELGGTPLTDAGLKQLAGFDTLGHLGLSNTKVTGAGLKELAALKQLS 285
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L++ +TDA +K I L++LT L + ++ +TD + ++ LT L LN++++++T+
Sbjct: 286 GLDLGSTKITDADLKEIAALTNLTGLTM-RDTPVTDAGVRNLAPLTKLRRLNLTHTKVTN 344
Query: 460 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 496
A + L K+L S+ L VT K L++ LPN
Sbjct: 345 ACAKTLATFKHLTSVDLHQTDVTEEGGKELKAA-LPN 380
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 105/345 (30%), Positives = 174/345 (50%), Gaps = 3/345 (0%)
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132
G + L D + + +D + +D GL+ L + LT+L+ N +T +K A
Sbjct: 34 GRVFLSDGA-VTGVDLSGAKTFTDAGLKELSLFAGLTNLNLT-NTQVTDAALKDVARFPK 91
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
L L++ GL + GL +L L + + ++ S +K L+ LT L++L + V
Sbjct: 92 LTVLNVSYTQITDEGLREIAGLTELTDLVLDYTK-VSGSGLKHLAALTKLRTLSLGSKIV 150
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
TD+G+ L G++ L L+L VT A L ++ L L L L ++ G + + +
Sbjct: 151 TDAGLRGLVGVRGLRQLDLRETSVTDAGLKEIAPLSELKTLMLVNAPVTGPGLKDLALLT 210
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
L+ L L IT + L L GL +L L L + D GL L G L L LS+T+V
Sbjct: 211 KLQFLFLSGTRITGDGLSELTGLKSLRLLELGGTPLTDAGLKQLAGFDTLGHLGLSNTKV 270
Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
+GL+ L+ L L ++L T I+D L+++A L++L L + +TD G+ L LT
Sbjct: 271 TGAGLKELAALKQLSGLDLGSTKITDADLKEIAALTNLTGLTMRDTPVTDAGVRNLAPLT 330
Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
L L+L ++T++ A L FK+L S+++ +T+ G K +K
Sbjct: 331 KLRRLNLTHTKVTNACAKTLATFKHLTSVDLHQTDVTEEGGKELK 375
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 107/307 (34%), Positives = 156/307 (50%), Gaps = 10/307 (3%)
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
FAGL NL +L L ++ KL LN+ + ITD ++ ++GLT L L
Sbjct: 65 FAGLTNL---NLTNTQVTDAALKDVARFPKLTVLNVSYTQ-ITDEGLREIAGLTELTDLV 120
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
+ +KV+ SG+ +L L KL L+L VT A L L + L L+L ++D G +
Sbjct: 121 LDYTKVSGSGLKHLAALTKLRTLSLGSKIVTDAGLRGLVGVRGLRQLDLRETSVTDAGLK 180
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
+ + + LK L L +T L L LT L+ L L I +GL LTGL +L+ LE
Sbjct: 181 EIAPLSELKTLMLVNAPVTGPGLKDLALLTKLQFLFLSGTRITGDGLSELTGLKSLRLLE 240
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL- 365
L T + +GL+ L+G L + LS T ++ L++LA L L L+L + +ITD L
Sbjct: 241 LGGTPLTDAGLKQLAGFDTLGHLGLSNTKVTGAGLKELAALKQLSGLDLGSTKITDADLK 300
Query: 366 --AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
AALT+LTGLT D +TD+G L LR L + +T+A K + LT
Sbjct: 301 EIAALTNLTGLTMRD---TPVTDAGVRNLAPLTKLRRLNLTHTKVTNACAKTLATFKHLT 357
Query: 424 LLNLSQN 430
++L Q
Sbjct: 358 SVDLHQT 364
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 148/295 (50%), Gaps = 14/295 (4%)
Query: 4 RDISQQIFNEL-VYSRCLTEVSLEAFRDCA----LQDLCLGQYPGVNDKWMDVIASQGSS 58
+D+++ F +L V + T+++ E R+ A L DL L Y V+ + +A+ +
Sbjct: 84 KDVAR--FPKLTVLNVSYTQITDEGLREIAGLTELTDLVL-DYTKVSGSGLKHLAAL-TK 139
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++ L VTD+GL L L+ LD ++D GL+ + LS L +L N
Sbjct: 140 LRTLSLGSKIVTDAGLRGLVGVRGLRQLDLRET-SVTDAGLKEIAPLSELKTLML-VNAP 197
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+T G+K A L L L L TRI G GL L GL L L + +TD+ +K L+
Sbjct: 198 VTGPGLKDLALLTKLQFLFLS-GTRITGDGLSELTGLKSLRLLEL-GGTPLTDAGLKQLA 255
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
G L L +S +KVT +G+ L L++L+ L+L +T A L ++AL +L L +
Sbjct: 256 GFDTLGHLGLSNTKVTGAGLKELAALKQLSGLDLGSTKITDADLKEIAALTNLTGLTMRD 315
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
++D G + + L+ LNL ++T+ C L +L S++L + +EG
Sbjct: 316 TPVTDAGVRNLAPLTKLRRLNLTHTKVTNACAKTLATFKHLTSVDLHQTDVTEEG 370
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 3/144 (2%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL ++L G+ +TD+GL L L L + +++ GL+ L L L+ L +
Sbjct: 235 SLRLLELGGTPLTDAGLKQLAGFDTLGHLGLS-NTKVTGAGLKELAALKQLSGLDL-GST 292
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
IT +K A L NL L + G+ NL L KL LN+ +T++ K L+
Sbjct: 293 KITDADLKEIAALTNLTGLTMRDTPVTDAGVRNLAPLTKLRRLNLTHTK-VTNACAKTLA 351
Query: 178 GLTNLKSLQISCSKVTDSGIAYLK 201
+L S+ + + VT+ G LK
Sbjct: 352 TFKHLTSVDLHQTDVTEEGGKELK 375
>gi|46447552|ref|YP_008917.1| hypothetical protein pc1918 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401193|emb|CAF24642.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 552
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 123/340 (36%), Positives = 177/340 (52%), Gaps = 13/340 (3%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+ +TD+ L+ LK+C NL+ L C I+D GL HL L+ L L+ +T G+
Sbjct: 204 AHLTDAHLLTLKNCENLKVLHLEACQAITDDGLAHLAPLTALQHLNLNGCYKLTDAGLVH 263
Query: 127 FAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
L L LDL C + GLV+LK L L++L + C +TD + L LT L++L
Sbjct: 264 LKSLTALQTLDLSYCKNLKDAGLVHLKPLTALQNLALTSCKNLTDRGLSHLKSLTALQTL 323
Query: 186 QIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSD 242
+S C D+G+A+L L L L+L C +T L L +L +L LNL+ C +L D
Sbjct: 324 DLSYCKNFKDAGLAHLPPLTALQTLDLSYCKDLTDRGLSHLKSLTALQTLNLSYCKKLKD 383
Query: 243 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC 300
G + +L+ L L +TD L HLK L L+ L L C + D GL +L L
Sbjct: 384 AGLAHLKPLTALQYLALNSCKNLTDRGLSHLKSLMALQHLVLSGCDNLTDAGLAHLKPLT 443
Query: 301 NLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-A 357
L+ L L Q + GL HL+ LT L++++LS+ + D L L L++L++L L
Sbjct: 444 ALQTLGLRRCQNLTGDGLAHLAPLTALQTLDLSYCKKLKDAGLAHLKPLTALQTLGLKWC 503
Query: 358 RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFK 396
+TD GLA L L L HLDL + +T +G L NFK
Sbjct: 504 SNLTDAGLAHLKPLAALQHLDLSYCNNLTRAG---LANFK 540
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 117/333 (35%), Positives = 182/333 (54%), Gaps = 32/333 (9%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E+LN +TD+ + L NLK L + +C +TD G+A+L L L LNL GC
Sbjct: 194 EIEALNFSNNAHLTDAHLLTLKNCENLKVLHLEACQAITDDGLAHLAPLTALQHLNLNGC 253
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLK 273
+L+D G + +L+ L+L + + D LVHLK
Sbjct: 254 -----------------------YKLTDAGLVHLKSLTALQTLDLSYCKNLKDAGLVHLK 290
Query: 274 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINL 331
LT L++L L SC + D GL +L L L+ L+LS + +GL HL LT L++++L
Sbjct: 291 PLTALQNLALTSCKNLTDRGLSHLKSLTALQTLDLSYCKNFKDAGLAHLPPLTALQTLDL 350
Query: 332 SF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR-ITDSG 388
S+ ++D L L L++L++LNL +++ D GLA L LT L +L L + +TD G
Sbjct: 351 SYCKDLTDRGLSHLKSLTALQTLNLSYCKKLKDAGLAHLKPLTALQYLALNSCKNLTDRG 410
Query: 389 AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
++L++ L+ L + G LTDAG+ H+K L++L L L + NLT L ++ LT L
Sbjct: 411 LSHLKSLMALQHLVLSGCDNLTDAGLAHLKPLTALQTLGLRRCQNLTGDGLAHLAPLTAL 470
Query: 448 VSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 479
+L++S ++ AGL HLKPL L++L L+ C
Sbjct: 471 QTLDLSYCKKLKDAGLAHLKPLTALQTLGLKWC 503
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 124/355 (34%), Positives = 193/355 (54%), Gaps = 21/355 (5%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
+++L+F+ ++D L L+ NL L AIT G+ A L L L+L C
Sbjct: 195 IEALNFSNNAHLTDAHLLTLKNCENLKVLHLEACQAITDDGLAHLAPLTALQHLNLNGCY 254
Query: 143 RI-HGGLVNLKGLMKLESLNIKWCNCITDS---DMKPLSGLTNLKSLQISCSKVTDSGIA 198
++ GLV+LK L L++L++ +C + D+ +KPL+ L NL SC +TD G++
Sbjct: 255 KLTDAGLVHLKSLTALQTLDLSYCKNLKDAGLVHLKPLTALQNLA--LTSCKNLTDRGLS 312
Query: 199 YLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKV 256
+LK L L L+L C A L L L +L L+L+ C+ L+D G + +L+
Sbjct: 313 HLKSLTALQTLDLSYCKNFKDAGLAHLPPLTALQTLDLSYCKDLTDRGLSHLKSLTALQT 372
Query: 257 LNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVG 313
LNL + ++ D L HLK LT L+ L L+SC + D GL +L L L+ L LS +
Sbjct: 373 LNLSYCKKLKDAGLAHLKPLTALQYLALNSCKNLTDRGLSHLKSLMALQHLVLSGCDNLT 432
Query: 314 SSGLRHLSGLTNLESINL----SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAAL 368
+GL HL LT L+++ L + TG DG L LA L++L++L+L +++ D GLA L
Sbjct: 433 DAGLAHLKPLTALQTLGLRRCQNLTG--DG-LAHLAPLTALQTLDLSYCKKLKDAGLAHL 489
Query: 369 TSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSS 421
LT L L L + + +TD+G A+L+ L+ L++ LT AG+ + K L +
Sbjct: 490 KPLTALQTLGLKWCSNLTDAGLAHLKPLAALQHLDLSYCNNLTRAGLANFKILGA 544
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 163/300 (54%), Gaps = 33/300 (11%)
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEK 247
+ +TD+ + LK + L +L+LE C +T L L+ L +L +LNLN C +L+D G
Sbjct: 204 AHLTDAHLLTLKNCENLKVLHLEACQAITDDGLAHLAPLTALQHLNLNGCYKLTDAGLVH 263
Query: 248 FSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCL 305
+ +L+ L+L + + D LVHLK LT L++L L SC + D GL +L L L+ L
Sbjct: 264 LKSLTALQTLDLSYCKNLKDAGLVHLKPLTALQNLALTSCKNLTDRGLSHLKSLTALQTL 323
Query: 306 ELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITD 362
+LS + +GL HL LT L++++LS+ ++D L L L++L++LNL +++ D
Sbjct: 324 DLSYCKNFKDAGLAHLPPLTALQTLDLSYCKDLTDRGLSHLKSLTALQTLNLSYCKKLKD 383
Query: 363 TGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLS 420
GLA L LT L +L L + +TD G ++L++ L+ L + G LTDAG+ H+K L+
Sbjct: 384 AGLAHLKPLTALQYLALNSCKNLTDRGLSHLKSLMALQHLVLSGCDNLTDAGLAHLKPLT 443
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
+L L L + NLT GL HL PL L++L L CK
Sbjct: 444 ALQTLGLRRCQNLTGD------------------------GLAHLAPLTALQTLDLSYCK 479
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 96/253 (37%), Positives = 141/253 (55%), Gaps = 8/253 (3%)
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGL 293
N L+D +LKVL+L ITD+ L HL LT L+ LNL+ C + D GL
Sbjct: 202 NNAHLTDAHLLTLKNCENLKVLHLEACQAITDDGLAHLAPLTALQHLNLNGCYKLTDAGL 261
Query: 294 VNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLK 351
V+L L L+ L+LS + + +GL HL LT L+++ L S ++D L L L++L+
Sbjct: 262 VHLKSLTALQTLDLSYCKNLKDAGLVHLKPLTALQNLALTSCKNLTDRGLSHLKSLTALQ 321
Query: 352 SLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGL 408
+L+L + D GLA L LT L LDL + +TD G ++L++ L++L + L
Sbjct: 322 TLDLSYCKNFKDAGLAHLPPLTALQTLDLSYCKDLTDRGLSHLKSLTALQTLNLSYCKKL 381
Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKP 467
DAG+ H+K L++L L L+ NLTD+ L + L L L +S +T AGL HLKP
Sbjct: 382 KDAGLAHLKPLTALQYLALNSCKNLTDRGLSHLKSLMALQHLVLSGCDNLTDAGLAHLKP 441
Query: 468 LKNLRSLTLESCK 480
L L++L L C+
Sbjct: 442 LTALQTLGLRRCQ 454
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 135/245 (55%), Gaps = 34/245 (13%)
Query: 247 KFSKI-----GSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 299
+F KI ++ LN N +TD L+ LK NL+ L+L++C I D+GL +L L
Sbjct: 183 EFEKIINHFSNEIEALNFSNNAHLTDAHLLTLKNCENLKVLHLEACQAITDDGLAHLAPL 242
Query: 300 CNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA 357
L+ L L+ ++ +GL HL LT L++++LS+ + D L L L++L++L L +
Sbjct: 243 TALQHLNLNGCYKLTDAGLVHLKSLTALQTLDLSYCKNLKDAGLVHLKPLTALQNLALTS 302
Query: 358 -RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
+ +TD GL+ L SLT L LDL +Y +NFK DAG+ H+
Sbjct: 303 CKNLTDRGLSHLKSLTALQTLDL----------SYCKNFK-------------DAGLAHL 339
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLT 475
L++L L+LS +LTD+ L + LT L +LN+S ++ AGL HLKPL L+ L
Sbjct: 340 PPLTALQTLDLSYCKDLTDRGLSHLKSLTALQTLNLSYCKKLKDAGLAHLKPLTALQYLA 399
Query: 476 LESCK 480
L SCK
Sbjct: 400 LNSCK 404
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
++L ++DLS + D+GL HLK + LQ+L +C ++D GL HL+ L+ L L
Sbjct: 468 TALQTLDLSYCKKLKDAGLAHLKPLTALQTLGLKWCSNLTDAGLAHLKPLAALQHLDLSY 527
Query: 116 NNAITAQGMKAFAGLINLVKLDLER 140
N +T G+ F L + L++ R
Sbjct: 528 CNNLTRAGLANFKILGASLNLEIVR 552
>gi|384245058|gb|EIE18554.1| L domain-like protein [Coccomyxa subellipsoidea C-169]
Length = 731
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 140/397 (35%), Positives = 221/397 (55%), Gaps = 15/397 (3%)
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
T + L K S LQ L+ C +I D GL+ L L++LTS++ + ITAQG+ A +G
Sbjct: 312 TGAELREWKGLSLLQELNLKGCYKIEDAGLQGLSLLTSLTSINMQECWQITAQGLAALSG 371
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
L ++ ++L+ C +I L L L +L +LN++ C+ + DS + PLS L +L+SL +S
Sbjct: 372 LSRMMDVNLQGCRKI-SSLEPLASLSRLAALNLRNCDGLGDSSLGPLSRLVSLRSLDLSG 430
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRC-QLSDDGC 245
C+ +T G+ L L LT L L+ C +A L LS L +L LNL+ C Q G
Sbjct: 431 CTHLTGRGLLPLSSLTGLTALKLQHCAGIRRSADLAPLSLLTALSTLNLSGCSQEEGAGI 490
Query: 246 EKFSKIGSLKVLNL-GFNEIT--DECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
+ + L+ L+L G+ +T D+ L+ L L + SLNL C + D GL + + +
Sbjct: 491 SSLATLTCLRALSLDGWRHVTFIDDGLMALTSLRGVASLNLQGCTSLTDVGLAAIGHMTS 550
Query: 302 LKCLELSD-TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL-DAR 358
L + L D Q+ G +G+ +L S++L + + +SD +A ++SL++LNL +
Sbjct: 551 LTNVNLQDCRQITGEGFAGWAGMAHLTSLSLQNASMVSDAGCCAIARITSLRTLNLKNCP 610
Query: 359 QITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI 416
+TD LAALT L L HL L G +++D+ A+ +L+ LE LTDAG+ +
Sbjct: 611 ALTDDCLAALTPLERLCHLRLQGNQQLSDAALAHCARMPSLQHLETSNCWHLTDAGLTRL 670
Query: 417 KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNV 452
L++L L+LS +TD+ +E L+ LT LV+LNV
Sbjct: 671 TALTTLAHLDLSYCWQVTDRGVEHLVKSLTTLVTLNV 707
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 146/439 (33%), Positives = 221/439 (50%), Gaps = 56/439 (12%)
Query: 57 SSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
+SL +DLSGS D+TD+GL+HL S L++L C+++S GL R L + LS R
Sbjct: 223 TSLTHLDLSGSHDITDAGLLHLGSLSRLRTLVLWNCMRVSVDGLAVFRQLPAVADLSLRG 282
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMKLESLNIKWCNCITDSDMK 174
++ + A L L +LDL C R G L KGL L+ LN+K C I D+ ++
Sbjct: 283 CAQLSDALCGSVAHLEQLTRLDLRACERFTGAELREWKGLSLLQELNLKGCYKIEDAGLQ 342
Query: 175 PLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
LS LT+L S+ + C ++T G+A L GL ++ +NL+GC ++ L+ L++L L L
Sbjct: 343 GLSLLTSLTSINMQECWQITAQGLAALSGLSRMMDVNLQGCRKISS-LEPLASLSRLAAL 401
Query: 234 NLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
NL C L D S++ SL+ L+L G +T L+ L LT L +L L C
Sbjct: 402 NLRNCDGLGDSSLGPLSRLVSLRSLDLSGCTHLTGRGLLPLSSLTGLTALKLQHCA---- 457
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS-LRKLAGLSSL 350
G+ S+ L LS LT L ++NLS +G+ + LA L+ L
Sbjct: 458 GIRR------------------SADLAPLSLLTALSTLNLSGCSQEEGAGISSLATLTCL 499
Query: 351 KSLNLDA-RQIT--DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
++L+LD R +T D GL ALTSL G+ L+L G
Sbjct: 500 RALSLDGWRHVTFIDDGLMALTSLRGVASLNLQGCT-----------------------S 536
Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLK 466
LTD G+ I ++SLT +NL +T + +G+ L SL++ N S ++ AG +
Sbjct: 537 LTDVGLAAIGHMTSLTNVNLQDCRQITGEGFAGWAGMAHLTSLSLQNASMVSDAGCCAIA 596
Query: 467 PLKNLRSLTLESCKVTAND 485
+ +LR+L L++C +D
Sbjct: 597 RITSLRTLNLKNCPALTDD 615
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 127/368 (34%), Positives = 185/368 (50%), Gaps = 28/368 (7%)
Query: 133 LVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CS 190
L +LD+ C R+ + L NL+ L L S+ + C +TD + LS L+ L SL +S C
Sbjct: 96 LQQLDMSACRRVSNDELANLRHLPNLTSVVLAGCEDVTDEGLLHLSHLSRLASLNLSNCC 155
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPV-----TAACLDSLSALGSLFYLNLNR-CQLSDDG 244
KVTD G+ L L++L LNL GC AA L L +L +R +SD
Sbjct: 156 KVTDGGLLALAALRQLGSLNLSGCVSLSERGLAAIAARLRRLHTLKLGGTSRVATISDAS 215
Query: 245 CEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLV---NLTGL 299
+ + SL L+L G ++ITD L+HL L+ L +L L +C + +GL L +
Sbjct: 216 VAAIAGLTSLTHLDLSGSHDITDAGLLHLGSLSRLRTLVLWNCMRVSVDGLAVFRQLPAV 275
Query: 300 CNLK---CLELSDTQVGSSGLRHLSGLTNLE-SINLSFTGISDGSLRKLAGLSSLKSLNL 355
+L C +LSD GS + HL LT L+ FTG LR+ GLS L+ LNL
Sbjct: 276 ADLSLRGCAQLSDALCGS--VAHLEQLTRLDLRACERFTG---AELREWKGLSLLQELNL 330
Query: 356 DA-RQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
+I D GL L+ LT LT +++ +IT G A L + + + G + +
Sbjct: 331 KGCYKIEDAGLQGLSLLTSLTSINMQECWQITAQGLAALSGLSRMMDVNL-QGCRKISSL 389
Query: 414 KHIKDLSSLTLLNLSQNCN-LTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNL 471
+ + LS L LNL +NC+ L D +L +S L L SL++S + +T GL L L L
Sbjct: 390 EPLASLSRLAALNL-RNCDGLGDSSLGPLSRLVSLRSLDLSGCTHLTGRGLLPLSSLTGL 448
Query: 472 RSLTLESC 479
+L L+ C
Sbjct: 449 TALKLQHC 456
>gi|290982526|ref|XP_002673981.1| predicted protein [Naegleria gruberi]
gi|284087568|gb|EFC41237.1| predicted protein [Naegleria gruberi]
Length = 363
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 110/371 (29%), Positives = 195/371 (52%), Gaps = 11/371 (2%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIK 163
+ LTSL+ NN I+ +G K + + L L++ RI G G + + +L SLNI
Sbjct: 1 MKQLTSLNVS-NNQISGKGAKYISEMKQLTSLNISN-NRIGGKGAKYISEMKQLTSLNI- 57
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+ N I+D K +S + L SL IS +++ G ++ +++LT LN+ ++
Sbjct: 58 FNNRISDEGAKYISEMKQLISLDISYNQIGAEGAKFISEMKQLTSLNISYNEISDEGAKY 117
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+S + L LN++ +S+ G + S++ L LN+ N+I+ + ++ + L SLN+
Sbjct: 118 ISEMKQLTSLNISYNDISE-GAKPISEMKQLTSLNVSNNQISGKGAKYISEMKQLTSLNI 176
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
I +G + + L L++S+ Q+ G + LS + L S+N+S IS +
Sbjct: 177 SDNQISGKGAKYIGEMKQLTSLDISNNQISDEGAKFLSEMKQLISLNVSNNQISGKEAKF 236
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
++ + L SLN+ QI+D ++ + LT LD+F I+D GA Y+ K+L SL+I
Sbjct: 237 MSEMKQLTSLNISNNQISDERAKYISEMKQLTSLDIFNNLISDEGAKYISEMKHLTSLDI 296
Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
++ HI ++ LT LN+S N + D+ + IS + L SL++S +RI G +
Sbjct: 297 SYNEIS-----HISEMKQLTSLNISFN-QINDEGAKSISEMKQLTSLDMSYNRIGGEGAK 350
Query: 464 HLKPLKNLRSL 474
++ +K+L SL
Sbjct: 351 YISEMKHLTSL 361
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 152/274 (55%), Gaps = 9/274 (3%)
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
LN++ Q+S G + S++ L LN+ N I + ++ + L SLN+ + I DEG
Sbjct: 7 LNVSNNQISGKGAKYISEMKQLTSLNISNNRIGGKGAKYISEMKQLTSLNIFNNRISDEG 66
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
++ + L L++S Q+G+ G + +S + L S+N+S+ ISD + ++ + L S
Sbjct: 67 AKYISEMKQLISLDISYNQIGAEGAKFISEMKQLTSLNISYNEISDEGAKYISEMKQLTS 126
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
LN+ I++ G ++ + LT L++ +I+ GA Y+ K L SL I ++ G
Sbjct: 127 LNISYNDISE-GAKPISEMKQLTSLNVSNNQISGKGAKYISEMKQLTSLNISDNQISGKG 185
Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 472
K+I ++ LT L++S N ++D+ + +S + L+SLNVSN++I+ + + +K L
Sbjct: 186 AKYIGEMKQLTSLDIS-NNQISDEGAKFLSEMKQLISLNVSNNQISGKEAKFMSEMKQLT 244
Query: 473 SLTLESCKVT------ANDIKRLQSRDL-PNLVS 499
SL + + +++ +++K+L S D+ NL+S
Sbjct: 245 SLNISNNQISDERAKYISEMKQLTSLDIFNNLIS 278
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 89/348 (25%), Positives = 172/348 (49%), Gaps = 33/348 (9%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+++ + ++D G ++ + L SLD ++ QI G + + + LTSL+
Sbjct: 47 SEMKQLTSLNIFNNRISDEGAKYISEMKQLISLDISYN-QIGAEGAKFISEMKQLTSLNI 105
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I+ +G K + + +L SLNI + N I++
Sbjct: 106 SY-NEISDEGAKYIS------------------------EMKQLTSLNISY-NDISEG-A 138
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
KP+S + L SL +S ++++ G Y+ +++LT LN+ ++ + + L L
Sbjct: 139 KPISEMKQLTSLNVSNNQISGKGAKYISEMKQLTSLNISDNQISGKGAKYIGEMKQLTSL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+++ Q+SD+G + S++ L LN+ N+I+ + + + L SLN+ + I DE
Sbjct: 199 DISNNQISDEGAKFLSEMKQLISLNVSNNQISGKEAKFMSEMKQLTSLNISNNQISDERA 258
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
++ + L L++ + + G +++S + +L S+++S+ IS ++ + L SL
Sbjct: 259 KYISEMKQLTSLDIFNNLISDEGAKYISEMKHLTSLDISYNEISH-----ISEMKQLTSL 313
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
N+ QI D G +++ + LT LD+ RI GA Y+ K+L SL
Sbjct: 314 NISFNQINDEGAKSISEMKQLTSLDMSYNRIGGEGAKYISEMKHLTSL 361
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 107/204 (52%), Gaps = 8/204 (3%)
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
+ L L +S+ Q+ G +++S + L S+N+S I + ++ + L SLN+
Sbjct: 1 MKQLTSLNVSNNQISGKGAKYISEMKQLTSLNISNNRIGGKGAKYISEMKQLTSLNIFNN 60
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
+I+D G ++ + L LD+ +I GA ++ K L SL I ++D G K+I +
Sbjct: 61 RISDEGAKYISEMKQLISLDISYNQIGAEGAKFISEMKQLTSLNISYNEISDEGAKYISE 120
Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 478
+ LT LN+S N + + IS + L SLNVSN++I+ G +++ +K L SL +
Sbjct: 121 MKQLTSLNISYND--ISEGAKPISEMKQLTSLNVSNNQISGKGAKYISEMKQLTSLNISD 178
Query: 479 CKVTAN------DIKRLQSRDLPN 496
+++ ++K+L S D+ N
Sbjct: 179 NQISGKGAKYIGEMKQLTSLDISN 202
>gi|46446665|ref|YP_008030.1| hypothetical protein pc1031 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400306|emb|CAF23755.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 553
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 127/345 (36%), Positives = 184/345 (53%), Gaps = 10/345 (2%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LKDC NL+ L C ++D GL HL L+ L L +T G+
Sbjct: 207 LTDAHLLALKDCENLKVLHCKKCWGVTDAGLAHLTPLTALQRLDLSYCENLTDDGLAHLT 266
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L LDL C + GL +L L L+ L + C +TD+ + L+ LT L+ L +
Sbjct: 267 PLTALQHLDLSYCENLTDDGLAHLAPLKALQRLALTNCKNLTDAGLTHLTTLTALQHLDL 326
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDG 244
S K+TD+G+A+LK L L L+L C +T A + L L +L +L+L++ + L+D G
Sbjct: 327 SQYWKLTDAGLAHLKPLTALQHLDLSLCYYLTDAGIAHLKPLTALQHLDLSQYRNLTDAG 386
Query: 245 CEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNL 302
+ + L+ LNL +TD L HL LT L+ LNL SC + D GLV+L L L
Sbjct: 387 LAHLTPLMGLQYLNLSACKNLTDAGLAHLAPLTALQHLNLSSCYNLTDAGLVHLIPLTAL 446
Query: 303 KCLELSDTQ-VGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQ 359
+ L LSD + + +GL HL+ LT L+ +NLS ++D L L L +L L+L +
Sbjct: 447 QHLYLSDWENLTDTGLAHLAPLTALQHLNLSNCRKLTDDGLAHLKSLVTLTHLDLSWCKN 506
Query: 360 ITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEI 403
TD GL LT LTGL +L L +TD G A + +L+I
Sbjct: 507 FTDEGLTHLTPLTGLQYLVLSLCYHLTDDGLARFKTLAVSHNLKI 551
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 123/336 (36%), Positives = 177/336 (52%), Gaps = 32/336 (9%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLE 212
L K+E+LN +TD+ + L NLK L C VTD+G+A+L L L L+L
Sbjct: 193 LKKIETLNFSDNAYLTDAHLLALKDCENLKVLHCKKCWGVTDAGLAHLTPLTALQRLDLS 252
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVH 271
C L+DDG + + +L+ L+L + E +TD+ L H
Sbjct: 253 YCE-----------------------NLTDDGLAHLTPLTALQHLDLSYCENLTDDGLAH 289
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESI 329
L L L+ L L +C + D GL +LT L L+ L+LS ++ +GL HL LT L+ +
Sbjct: 290 LAPLKALQRLALTNCKNLTDAGLTHLTTLTALQHLDLSQYWKLTDAGLAHLKPLTALQHL 349
Query: 330 NLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR-ITD 386
+LS ++D + L L++L+ L+L R +TD GLA LT L GL +L+L + +TD
Sbjct: 350 DLSLCYYLTDAGIAHLKPLTALQHLDLSQYRNLTDAGLAHLTPLMGLQYLNLSACKNLTD 409
Query: 387 SGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 445
+G A+L L+ L + LTDAG+ H+ L++L L LS NLTD L ++ LT
Sbjct: 410 AGLAHLAPLTALQHLNLSSCYNLTDAGLVHLIPLTALQHLYLSDWENLTDTGLAHLAPLT 469
Query: 446 GLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCK 480
L LN+SN R +T GL HLK L L L L CK
Sbjct: 470 ALQHLNLSNCRKLTDDGLAHLKSLVTLTHLDLSWCK 505
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 125/374 (33%), Positives = 190/374 (50%), Gaps = 33/374 (8%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIK 163
L + +L+F N +T + A NL L ++C + GL +L L L+ L++
Sbjct: 193 LKKIETLNFSDNAYLTDAHLLALKDCENLKVLHCKKCWGVTDAGLAHLTPLTALQRLDLS 252
Query: 164 WCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
+C +TD + L+ LT L+ L +S C +TD G+A+L L+ L L L C
Sbjct: 253 YCENLTDDGLAHLTPLTALQHLDLSYCENLTDDGLAHLAPLKALQRLALTNCK------- 305
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESL 281
L+D G + + +L+ L+L + ++TD L HLK LT L+ L
Sbjct: 306 ----------------NLTDAGLTHLTTLTALQHLDLSQYWKLTDAGLAHLKPLTALQHL 349
Query: 282 NLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISD 338
+L C + D G+ +L L L+ L+LS + + +GL HL+ L L+ +NLS ++D
Sbjct: 350 DLSLCYYLTDAGIAHLKPLTALQHLDLSQYRNLTDAGLAHLTPLMGLQYLNLSACKNLTD 409
Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFK 396
L LA L++L+ LNL + +TD GL L LT L HL L +TD+G A+L
Sbjct: 410 AGLAHLAPLTALQHLNLSSCYNLTDAGLVHLIPLTALQHLYLSDWENLTDTGLAHLAPLT 469
Query: 397 NLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS-N 454
L+ L + LTD G+ H+K L +LT L+LS N TD+ L ++ LTGL L +S
Sbjct: 470 ALQHLNLSNCRKLTDDGLAHLKSLVTLTHLDLSWCKNFTDEGLTHLTPLTGLQYLVLSLC 529
Query: 455 SRITSAGLRHLKPL 468
+T GL K L
Sbjct: 530 YHLTDDGLARFKTL 543
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 117/339 (34%), Positives = 179/339 (52%), Gaps = 11/339 (3%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL 77
LT+ L A +DC L+ L + GV D + + + ++L +DLS ++TD GL HL
Sbjct: 207 LTDAHLLALKDCENLKVLHCKKCWGVTDAGLAHL-TPLTALQRLDLSYCENLTDDGLAHL 265
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
+ LQ LD ++C ++D GL HL L L L+ +T G+ L L LD
Sbjct: 266 TPLTALQHLDLSYCENLTDDGLAHLAPLKALQRLALTNCKNLTDAGLTHLTTLTALQHLD 325
Query: 138 LERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDS 195
L + ++ GL +LK L L+ L++ C +TD+ + L LT L+ L +S + +TD+
Sbjct: 326 LSQYWKLTDAGLAHLKPLTALQHLDLSLCYYLTDAGIAHLKPLTALQHLDLSQYRNLTDA 385
Query: 196 GIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGS 253
G+A+L L L LNL C +T A L L+ L +L +LNL+ C L+D G + +
Sbjct: 386 GLAHLTPLMGLQYLNLSACKNLTDAGLAHLAPLTALQHLNLSSCYNLTDAGLVHLIPLTA 445
Query: 254 LKVLNLG-FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ 311
L+ L L + +TD L HL LT L+ LNL +C + D+GL +L L L L+LS +
Sbjct: 446 LQHLYLSDWENLTDTGLAHLAPLTALQHLNLSNCRKLTDDGLAHLKSLVTLTHLDLSWCK 505
Query: 312 -VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLS 348
GL HL+ LT L+ + LS ++D L + L+
Sbjct: 506 NFTDEGLTHLTPLTGLQYLVLSLCYHLTDDGLARFKTLA 544
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 117/245 (47%), Gaps = 30/245 (12%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL HLK + LQ LD + C ++D G+ HL+ L+ L L + +T G+
Sbjct: 332 LTDAGLAHLKPLTALQHLDLSLCYYLTDAGIAHLKPLTALQHLDLSQYRNLTDAGLAHLT 391
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ L L+L C + GL +L L L+ LN+ C +TD+ + L LT L+ L +
Sbjct: 392 PLMGLQYLNLSACKNLTDAGLAHLAPLTALQHLNLSSCYNLTDAGLVHLIPLTALQHLYL 451
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
S +TD+G+A+L L L LNL C +L+DDG
Sbjct: 452 SDWENLTDTGLAHLAPLTALQHLNLSNCR-----------------------KLTDDGLA 488
Query: 247 KFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC---N 301
+ +L L+L + TDE L HL LT L+ L L C + D+GL L N
Sbjct: 489 HLKSLVTLTHLDLSWCKNFTDEGLTHLTPLTGLQYLVLSLCYHLTDDGLARFKTLAVSHN 548
Query: 302 LKCLE 306
LK ++
Sbjct: 549 LKIIK 553
>gi|290973802|ref|XP_002669636.1| predicted protein [Naegleria gruberi]
gi|284083186|gb|EFC36892.1| predicted protein [Naegleria gruberi]
Length = 548
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 139/429 (32%), Positives = 209/429 (48%), Gaps = 21/429 (4%)
Query: 46 DKWMDVIAS---QGSSLLSVDLSGSDVTDS--GLIHLKDCSNLQSLDFNFCI-QISDGGL 99
+KW D I + +LS+ + G ++ + G I K NL LD C +I +
Sbjct: 76 EKWTDFIERSNLEMDKVLSLTIDGVELIEEQCGTISTK-LVNLTQLDL--CRNKIKPTVV 132
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
+ L L+NL L+ +N I G K + L +L LDL G L L L
Sbjct: 133 KGLSSLTNLKKLNLG-HNEIGNDGAKHVSSLTHLTALDLFDNGIGPNGAQRLSSLTNLTQ 191
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
LN+ N I D+ + +S LTNL L + +K+ +G+ L+GL+KLT L+L G +
Sbjct: 192 LNL-GNNEIGDAGAEHISSLTNLTQLNLRITKLGANGVKSLRGLKKLTELDLSGNQIGYE 250
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+++LS L +L LNL +++ DG E+ + +L L+L HL L NL
Sbjct: 251 GVNNLSELKNLKKLNLGNNRITGDGAERLCGLENLTELDLRAE--------HLSQLKNLT 302
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
+NL IG G L L NL L L +G+ L L NL ++L + I D
Sbjct: 303 QINLCLNQIGPNGAERLCELTNLTQLNLRSNLIGAIKAESLCKLENLTQLDLGYNRIEDD 362
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
++L+ L L L+L QI G +L+ LT LTHLDL G I D GA +L K L
Sbjct: 363 GAQRLSKLKKLTQLDLSGNQIGSIGAQSLSELTNLTHLDLNGNGIED-GAQHLSKLKKLT 421
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + + D G K++ +L+ LT L+L N + D E +S L + L++ ++ I +
Sbjct: 422 RLGLNDNRIGDDGAKYLSELNKLTHLSLDNN-GIGDTGAECLSKLKNITYLSLDDNEIET 480
Query: 460 AGLRHLKPL 468
AG +HL+ L
Sbjct: 481 AGKKHLRKL 489
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 141/296 (47%), Gaps = 18/296 (6%)
Query: 203 LQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
+ K+ L ++G + C + L +L L+L R ++ + S + +LK LNLG
Sbjct: 89 MDKVLSLTIDGVELIEEQCGTISTKLVNLTQLDLCRNKIKPTVVKGLSSLTNLKKLNLGH 148
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
NEI ++ H+ LT+L +L+L GIG G L+ L NL L L + ++G +G H+S
Sbjct: 149 NEIGNDGAKHVSSLTHLTALDLFDNGIGPNGAQRLSSLTNLTQLNLGNNEIGDAGAEHIS 208
Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
LTNL +NL T + ++ L GL L L+L QI G+ L+ L L L+L
Sbjct: 209 SLTNLTQLNLRITKLGANGVKSLRGLKKLTELDLSGNQIGYEGVNNLSELKNLKKLNLGN 268
Query: 382 ARITDSG----------------AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
RIT G A +L KNL + +C + G + + +L++LT L
Sbjct: 269 NRITGDGAERLCGLENLTELDLRAEHLSQLKNLTQINLCLNQIGPNGAERLCELTNLTQL 328
Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
NL N K E + L L L++ +RI G + L LK L L L ++
Sbjct: 329 NLRSNLIGAIKA-ESLCKLENLTQLDLGYNRIEDDGAQRLSKLKKLTQLDLSGNQI 383
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 108/363 (29%), Positives = 164/363 (45%), Gaps = 47/363 (12%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L+ L LG ND V S + L ++DL + + +G L +NL L+
Sbjct: 141 LKKLNLGHNEIGNDGAKHV--SSLTHLTALDLFDNGIGPNGAQRLSSLTNLTQLNLGNN- 197
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I D G EH+ L+NLT L+ R + A G+K+ GL L +LDL + G+ NL
Sbjct: 198 EIGDAGAEHISSLTNLTQLNLRIT-KLGANGVKSLRGLKKLTELDLSGNQIGYEGVNNLS 256
Query: 153 GLMKLESLNI-----------KWCNC--ITDSDMKP--LSGLTNLKSLQISCSKVTDSGI 197
L L+ LN+ + C +T+ D++ LS L NL + + +++ +G
Sbjct: 257 ELKNLKKLNLGNNRITGDGAERLCGLENLTELDLRAEHLSQLKNLTQINLCLNQIGPNGA 316
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
L L LT LNL + A +SL L +L L+L ++ DDG ++ SK+ L L
Sbjct: 317 ERLCELTNLTQLNLRSNLIGAIKAESLCKLENLTQLDLGYNRIEDDGAQRLSKLKKLTQL 376
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCG-----------------------IGDEGLV 294
+L N+I L LTNL L+L+ G IGD+G
Sbjct: 377 DLSGNQIGSIGAQSLSELTNLTHLDLNGNGIEDGAQHLSKLKKLTRLGLNDNRIGDDGAK 436
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG---SLRKLA--GLSS 349
L+ L L L L + +G +G LS L N+ ++L I LRKL GL S
Sbjct: 437 YLSELNKLTHLSLDNNGIGDTGAECLSKLKNITYLSLDDNEIETAGKKHLRKLIRCGLCS 496
Query: 350 LKS 352
+++
Sbjct: 497 IRT 499
>gi|46445833|ref|YP_007198.1| F-box protein [Candidatus Protochlamydia amoebophila UWE25]
gi|46399474|emb|CAF22923.1| putative F-box protein [Candidatus Protochlamydia amoebophila
UWE25]
Length = 337
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 119/331 (35%), Positives = 185/331 (55%), Gaps = 9/331 (2%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L ++L +TD+GL HLK LQ L+ ++C ++D GL HL L+ L L+
Sbjct: 6 ALQHLELGCCKLTDAGLAHLKSLVALQHLNLSWCDNLTDTGLAHLTPLTALQHLNLSVCG 65
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T G+ L+ L LDL +C ++ GL +L L+ L+ L ++ C +TD + L
Sbjct: 66 KLTGAGLAHLTPLVALENLDLSQCGKLTDAGLAHLTPLVALQHLGMRGCRKLTDVGLAHL 125
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLN 234
L L+ L + CS +TD+G+A+L+ L L LNL+ C +T L L L +L +L+
Sbjct: 126 RPLVALQHLDLDGCSNLTDAGLAHLRPLVALQHLNLKRCDNLTDIGLAHLRPLVALQHLD 185
Query: 235 LNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDE 291
L+ C L+D G + + +L+ LNL G + TD L HL L L+ LNL C + D
Sbjct: 186 LDGCNNLTDAGLAHLTPLVALQHLNLRGCFKFTDAGLAHLTPLVALQYLNLSDCSNLTDA 245
Query: 292 GLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSS 349
GL +L L L+ L LS +++ +GL HL+ L LE ++LS G ++D L LA L++
Sbjct: 246 GLAHLKSLVALQHLNLSWCSKLTGAGLAHLTPLVALEDLDLSQCGKLTDAGLAHLALLTA 305
Query: 350 LKSLNLD-ARQITDTGLAALTSLTGLTHLDL 379
L+ LNL+ R++TD GLA +L +L+L
Sbjct: 306 LQYLNLERCRKLTDAGLAHFKTLAASIYLNL 336
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 117/320 (36%), Positives = 160/320 (50%), Gaps = 44/320 (13%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
M+PL L + L++ C K+TD+G+A+LK L L LNL C
Sbjct: 1 MRPLVAL---QHLELGCCKLTDAGLAHLKSLVALQHLNLSWCD----------------- 40
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGD 290
L+D G + + +L+ LNL ++T L HL L LE+L+L CG + D
Sbjct: 41 ------NLTDTGLAHLTPLTALQHLNLSVCGKLTGAGLAHLTPLVALENLDLSQCGKLTD 94
Query: 291 EGLVNLTGLCNLK------CLELSDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRK 343
GL +LT L L+ C +L+D GL HL L L+ ++L + ++D L
Sbjct: 95 AGLAHLTPLVALQHLGMRGCRKLTDV-----GLAHLRPLVALQHLDLDGCSNLTDAGLAH 149
Query: 344 LAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSL 401
L L +L+ LNL +TD GLA L L L HLDL G +TD+G A+L L+ L
Sbjct: 150 LRPLVALQHLNLKRCDNLTDIGLAHLRPLVALQHLDLDGCNNLTDAGLAHLTPLVALQHL 209
Query: 402 EICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITS 459
+ G TDAG+ H+ L +L LNLS NLTD L + L L LN+S S++T
Sbjct: 210 NLRGCFKFTDAGLAHLTPLVALQYLNLSDCSNLTDAGLAHLKSLVALQHLNLSWCSKLTG 269
Query: 460 AGLRHLKPLKNLRSLTLESC 479
AGL HL PL L L L C
Sbjct: 270 AGLAHLTPLVALEDLDLSQC 289
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 122/334 (36%), Positives = 184/334 (55%), Gaps = 10/334 (2%)
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
L+ L L+L C GL +LK L+ L+ LN+ WC+ +TD+ + L+ LT L+ L +S
Sbjct: 4 LVALQHLELGCCKLTDAGLAHLKSLVALQHLNLSWCDNLTDTGLAHLTPLTALQHLNLSV 63
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCE 246
C K+T +G+A+L L L L+L C +T A L L+ L +L +L + C +L+D G
Sbjct: 64 CGKLTGAGLAHLTPLVALENLDLSQCGKLTDAGLAHLTPLVALQHLGMRGCRKLTDVGLA 123
Query: 247 KFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKC 304
+ +L+ L+L G + +TD L HL+ L L+ LNL C + D GL +L L L+
Sbjct: 124 HLRPLVALQHLDLDGCSNLTDAGLAHLRPLVALQHLNLKRCDNLTDIGLAHLRPLVALQH 183
Query: 305 LELSD-TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL-DARQIT 361
L+L + +GL HL+ L L+ +NL +D L L L +L+ LNL D +T
Sbjct: 184 LDLDGCNNLTDAGLAHLTPLVALQHLNLRGCFKFTDAGLAHLTPLVALQYLNLSDCSNLT 243
Query: 362 DTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDL 419
D GLA L SL L HL+L + +++T +G A+L L L++ G LTDAG+ H+ L
Sbjct: 244 DAGLAHLKSLVALQHLNLSWCSKLTGAGLAHLTPLVALEDLDLSQCGKLTDAGLAHLALL 303
Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
++L LNL + LTD L L + LN+
Sbjct: 304 TALQYLNLERCRKLTDAGLAHFKTLAASIYLNLQ 337
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 104/227 (45%), Gaps = 36/227 (15%)
Query: 18 RCLTEVSLEAFRD-CALQDLCLGQYPGVNDKWM----DVIASQGSSLLSVDLSGSDVTDS 72
R LT+V L R ALQ L L + D + ++A Q +L D ++TD
Sbjct: 115 RKLTDVGLAHLRPLVALQHLDLDGCSNLTDAGLAHLRPLVALQHLNLKRCD----NLTDI 170
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132
GL HL+ LQ LD + C ++D GL HL L L L+ R T G+ L+
Sbjct: 171 GLAHLRPLVALQHLDLDGCNNLTDAGLAHLTPLVALQHLNLRGCFKFTDAGLAHLTPLVA 230
Query: 133 LVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS--- 188
L L+L C+ + GL +LK L+ L+ LN+ WC+ +T + + L+ L L+ L +S
Sbjct: 231 LQYLNLSDCSNLTDAGLAHLKSLVALQHLNLSWCSKLTGAGLAHLTPLVALEDLDLSQCG 290
Query: 189 -----------------------CSKVTDSGIAYLKGLQKLTLLNLE 212
C K+TD+G+A+ K L LNL+
Sbjct: 291 KLTDAGLAHLALLTALQYLNLERCRKLTDAGLAHFKTLAASIYLNLQ 337
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 368 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLN 426
+ L L HL+L ++TD+G A+L++ L+ L + LTD G+ H+ L++L LN
Sbjct: 1 MRPLVALQHLELGCCKLTDAGLAHLKSLVALQHLNLSWCDNLTDTGLAHLTPLTALQHLN 60
Query: 427 LSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 480
LS LT L ++ L L +L++S ++T AGL HL PL L+ L + C+
Sbjct: 61 LSVCGKLTGAGLAHLTPLVALENLDLSQCGKLTDAGLAHLTPLVALQHLGMRGCR 115
>gi|46447141|ref|YP_008506.1| hypothetical protein pc1507 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400782|emb|CAF24231.1| hypothetical protein pc1507 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 623
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 118/349 (33%), Positives = 176/349 (50%), Gaps = 36/349 (10%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
+ +TD+ L+ LK C NL+ L C ++D GL HL L L L +T G+
Sbjct: 275 NAHLTDAHLLALKTCKNLKVLYLKKCCNLTDAGLSHLSPLVALQHLELSDCPRLTDAGLA 334
Query: 126 AFAGLINLVKLDLERCTRI--------------------------HGGLVNLKGLMKLES 159
L+ L L+L C+ H GL +L L+ L+
Sbjct: 335 HLTSLVALQYLNLSECSNFTDAGLAHLTPLLTLTHLNLSWCYNFTHAGLAHLTPLVALQH 394
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VT 217
LN+ C ITD+ + LS L L+ L + CS +TD+G+A+L L L L+L C +T
Sbjct: 395 LNLGHCRNITDAGLAHLSPLVALQHLNLGWCSNLTDAGLAHLSPLVALQHLDLGWCSNLT 454
Query: 218 AACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFN--EITDECLVHLKG 274
A L L++L +L +L+L+ C L+D G S + +L+ L+L N + D L HL
Sbjct: 455 DAGLAHLTSLVALQHLDLSWCYYLTDAGLAHLSPLVALQHLDLS-NCLSLKDAGLAHLTL 513
Query: 275 LTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS 332
L L+ LNL+ C + D GL +LT L L+ L+LS + +GL HL+ L L+ +++S
Sbjct: 514 LVTLKYLNLNKCHNLTDAGLAHLTPLVALQHLDLSQCPNLTGTGLAHLNSLMALQHLDMS 573
Query: 333 F-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL 379
+ ++D L L L +L+ LNL ++TD GLA L L L HLDL
Sbjct: 574 WCHNLTDAGLTHLTPLVNLRHLNLTKCPKLTDAGLAHLAPLVALEHLDL 622
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 132/355 (37%), Positives = 195/355 (54%), Gaps = 11/355 (3%)
Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCI 168
+L+F N +T + A NL L L++C + GL +L L+ L+ L + C +
Sbjct: 269 ALNFSENAHLTDAHLLALKTCKNLKVLYLKKCCNLTDAGLSHLSPLVALQHLELSDCPRL 328
Query: 169 TDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSA 226
TD+ + L+ L L+ L +S CS TD+G+A+L L LT LNL C T A L L+
Sbjct: 329 TDAGLAHLTSLVALQYLNLSECSNFTDAGLAHLTPLLTLTHLNLSWCYNFTHAGLAHLTP 388
Query: 227 LGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLD 284
L +L +LNL C+ ++D G S + +L+ LNLG+ + +TD L HL L L+ L+L
Sbjct: 389 LVALQHLNLGHCRNITDAGLAHLSPLVALQHLNLGWCSNLTDAGLAHLSPLVALQHLDLG 448
Query: 285 SCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSL 341
C + D GL +LT L L+ L+LS + +GL HLS L L+ ++LS + D L
Sbjct: 449 WCSNLTDAGLAHLTSLVALQHLDLSWCYYLTDAGLAHLSPLVALQHLDLSNCLSLKDAGL 508
Query: 342 RKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLR 399
L L +LK LNL+ +TD GLA LT L L HLDL +T +G A+L + L+
Sbjct: 509 AHLTLLVTLKYLNLNKCHNLTDAGLAHLTPLVALQHLDLSQCPNLTGTGLAHLNSLMALQ 568
Query: 400 SLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
L++ LTDAG+ H+ L +L LNL++ LTD L ++ L L L++S
Sbjct: 569 HLDMSWCHNLTDAGLTHLTPLVNLRHLNLTKCPKLTDAGLAHLAPLVALEHLDLS 623
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 124/336 (36%), Positives = 179/336 (53%), Gaps = 11/336 (3%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E+LN +TD+ + L NLK L + C +TD+G+++L L L L L C
Sbjct: 266 EVEALNFSENAHLTDAHLLALKTCKNLKVLYLKKCCNLTDAGLSHLSPLVALQHLELSDC 325
Query: 215 P-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVH 271
P +T A L L++L +L YLNL+ C +D G + + +L LNL + T L H
Sbjct: 326 PRLTDAGLAHLTSLVALQYLNLSECSNFTDAGLAHLTPLLTLTHLNLSWCYNFTHAGLAH 385
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESI 329
L L L+ LNL C I D GL +L+ L L+ L L + + +GL HLS L L+ +
Sbjct: 386 LTPLVALQHLNLGHCRNITDAGLAHLSPLVALQHLNLGWCSNLTDAGLAHLSPLVALQHL 445
Query: 330 NLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA-RITD 386
+L + + ++D L L L +L+ L+L +TD GLA L+ L L HLDL + D
Sbjct: 446 DLGWCSNLTDAGLAHLTSLVALQHLDLSWCYYLTDAGLAHLSPLVALQHLDLSNCLSLKD 505
Query: 387 SGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 445
+G A+L L+ L + LTDAG+ H+ L +L L+LSQ NLT L ++ L
Sbjct: 506 AGLAHLTLLVTLKYLNLNKCHNLTDAGLAHLTPLVALQHLDLSQCPNLTGTGLAHLNSLM 565
Query: 446 GLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 480
L L++S +T AGL HL PL NLR L L C
Sbjct: 566 ALQHLDMSWCHNLTDAGLTHLTPLVNLRHLNLTKCP 601
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 106/309 (34%), Positives = 166/309 (53%), Gaps = 9/309 (2%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
ALQ L L P + D + + S +L ++LS S+ TD+GL HL L L+ ++
Sbjct: 316 ALQHLELSDCPRLTDAGLAHLTSL-VALQYLNLSECSNFTDAGLAHLTPLLTLTHLNLSW 374
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
C + GL HL L L L+ IT G+ + L+ L L+L C+ + GL
Sbjct: 375 CYNFTHAGLAHLTPLVALQHLNLGHCRNITDAGLAHLSPLVALQHLNLGWCSNLTDAGLA 434
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTL 208
+L L+ L+ L++ WC+ +TD+ + L+ L L+ L +S C +TD+G+A+L L L
Sbjct: 435 HLSPLVALQHLDLGWCSNLTDAGLAHLTSLVALQHLDLSWCYYLTDAGLAHLSPLVALQH 494
Query: 209 LNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEIT 265
L+L C + A L L+ L +L YLNLN+C L+D G + + +L+ L+L +T
Sbjct: 495 LDLSNCLSLKDAGLAHLTLLVTLKYLNLNKCHNLTDAGLAHLTPLVALQHLDLSQCPNLT 554
Query: 266 DECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGL 323
L HL L L+ L++ C + D GL +LT L NL+ L L+ ++ +GL HL+ L
Sbjct: 555 GTGLAHLNSLMALQHLDMSWCHNLTDAGLTHLTPLVNLRHLNLTKCPKLTDAGLAHLAPL 614
Query: 324 TNLESINLS 332
LE ++LS
Sbjct: 615 VALEHLDLS 623
>gi|290998894|ref|XP_002682015.1| predicted protein [Naegleria gruberi]
gi|284095641|gb|EFC49271.1| predicted protein [Naegleria gruberi]
Length = 413
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 161/317 (50%), Gaps = 27/317 (8%)
Query: 160 LNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+N+K + DS +K +S + L SL I +++ G+ Y+ +++LT LN+ ++
Sbjct: 111 VNLKVSRWLLDSVDQLKFISEMKQLTSLDIYSNRIGVEGVKYISEMKQLTSLNISEIEIS 170
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
+S + L L ++ ++ D+G + S++ L LN+G NEI+DE H+ +
Sbjct: 171 DEGAKYISEMKQLTSLYIHNNEIGDEGSKHISEMKQLTSLNIGCNEISDEGAKHISEMNQ 230
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L SL++ IGDEG ++ + L L+++D ++G G +++S + L S+N+ F
Sbjct: 231 LISLSIGYNRIGDEGFKYISEMKQLTSLDITDDEIGDEGAKYISEMKQLTSLNIGFN--- 287
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
+I D G ++ L LT LD+ I+D GA Y+ K
Sbjct: 288 ---------------------EIGDEGAKYISELKQLTSLDISETEISDEGAKYISEMKQ 326
Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
L L I ++D G K+I +L LT L+++ N + ++ + IS + L+SLN+ +RI
Sbjct: 327 LIWLTIGYNEISDKGAKYISELKQLTSLDITDN-KIGNEGAKYISEMNQLISLNIGYNRI 385
Query: 458 TSAGLRHLKPLKNLRSL 474
G +++ +K L SL
Sbjct: 386 GDEGAKYISEMKQLTSL 402
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 150/284 (52%), Gaps = 8/284 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D+ + + G+ ++ + L SL+ + I+ISD G +++ + LTSL +
Sbjct: 130 SEMKQLTSLDIYSNRIGVEGVKYISEMKQLTSLNIS-EIEISDEGAKYISEMKQLTSL-Y 187
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSD 172
NN I +G K + + L L++ C I G ++ + +L SL+I + N I D
Sbjct: 188 IHNNEIGDEGSKHISEMKQLTSLNI-GCNEISDEGAKHISEMNQLISLSIGY-NRIGDEG 245
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
K +S + L SL I+ ++ D G Y+ +++LT LN+ + +S L L
Sbjct: 246 FKYISEMKQLTSLDITDDEIGDEGAKYISEMKQLTSLNIGFNEIGDEGAKYISELKQLTS 305
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L+++ ++SD+G + S++ L L +G+NEI+D+ ++ L L SL++ IG+EG
Sbjct: 306 LDISETEISDEGAKYISEMKQLIWLTIGYNEISDKGAKYISELKQLTSLDITDNKIGNEG 365
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLS---GLTNLESINLSF 333
++ + L L + ++G G +++S LT+L I+L F
Sbjct: 366 AKYISEMNQLISLNIGYNRIGDEGAKYISEMKQLTSLRQISLGF 409
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424
L ++ + LT LD++ RI G Y+ K L SL I ++D G K+I ++ LT
Sbjct: 126 LKFISEMKQLTSLDIYSNRIGVEGVKYISEMKQLTSLNISEIEISDEGAKYISEMKQLTS 185
Query: 425 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
L + N + D+ + IS + L SLN+ + I+ G +H+ + L SL++
Sbjct: 186 LYI-HNNEIGDEGSKHISEMKQLTSLNIGCNEISDEGAKHISEMNQLISLSI 236
>gi|325182005|emb|CCA16458.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 708
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 133/467 (28%), Positives = 223/467 (47%), Gaps = 37/467 (7%)
Query: 67 SDVTDSGLIHLKD--CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
SDV DS L L +QSLDF++C ++ GL+ L NL +F + + +
Sbjct: 245 SDVDDSWLEALPTHAIEQIQSLDFSYCHRLQFCGLKPQSRLPNLRVANFEGCLYLKPETI 304
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L+ L+L C I L +L+ L +L++L++ C IT+ ++ L+GL LK
Sbjct: 305 QRLGFSNRLISLNLTGCRLITDKTLYSLRHLFRLQNLHLSGCKWITEKGLQHLNGLFGLK 364
Query: 184 SLQIS---------------------------CSKVTDSGIAYLKGLQKLTLLNLEGCP- 215
L ++ CS ++D + + L+++ L L+GC
Sbjct: 365 RLYLARCVNVSNQAFRFFPTSFPNLVELDLSHCS-ISDIALHFTGRLREIHSLMLKGCSR 423
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+T L L +L L L++ C+ ++++++ LK+ F E L +K
Sbjct: 424 ITTKGLSHLGSLSKLRRLDVRYCKHVAGLSKEWTQLDMLKLACTEFKEADASILATMK-- 481
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFT 334
L L+L C + ++ L +L L +++T + L L L L+ +++S T
Sbjct: 482 -TLHELDLRCCLVAKGCFSFVSHLNSLVRLCVAETALTDESLIMLCKSLEKLQMLDVSCT 540
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
++D ++ L L L+LD IT+ L + L L L+LF A +TD G L+
Sbjct: 541 EVTDSGTMEIEMLGELSELHLDTPGITNRSLERVGKLKKLARLNLFAASVTDEGVEALKR 600
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
L+ L+IC GG+ GVK + L L LNLSQN + +++ + LT L LN+SN
Sbjct: 601 LDKLQDLDICSGGVGHRGVKALSQLKRLRSLNLSQNKEIRSQSVVHLEALTKLRFLNLSN 660
Query: 455 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 501
+ ITS+ L +L LK L SL++ + ++ I LQ +LP+L R
Sbjct: 661 TGITSSCLHNLFALKELESLSVYGVVLESSQIDELQE-NLPHLKVLR 706
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 94/326 (28%), Positives = 158/326 (48%), Gaps = 9/326 (2%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L+ L L + V+++ + +L+ +DLS ++D L + SL C
Sbjct: 363 LKRLYLARCVNVSNQAFRFFPTSFPNLVELDLSHCSISDIALHFTGRLREIHSLMLKGCS 422
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I+ GL HL LS L L R + G+ ++++KL CT ++
Sbjct: 423 RITTKGLSHLGSLSKLRRLDVRYCKHVA--GLSKEWTQLDMLKLA---CTEFKEADASIL 477
Query: 153 GLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLN 210
MK L L+++ C + +S L +L L ++ + +TD + L K L+KL +L+
Sbjct: 478 ATMKTLHELDLR-CCLVAKGCFSFVSHLNSLVRLCVAETALTDESLIMLCKSLEKLQMLD 536
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
+ VT + + LG L L+L+ +++ E+ K+ L LNL +TDE +
Sbjct: 537 VSCTEVTDSGTMEIEMLGELSELHLDTPGITNRSLERVGKLKKLARLNLFAASVTDEGVE 596
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHLSGLTNLESI 329
LK L L+ L++ S G+G G+ L+ L L+ L LS + ++ S + HL LT L +
Sbjct: 597 ALKRLDKLQDLDICSGGVGHRGVKALSQLKRLRSLNLSQNKEIRSQSVVHLEALTKLRFL 656
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNL 355
NLS TGI+ L L L L+SL++
Sbjct: 657 NLSNTGITSSCLHNLFALKELESLSV 682
>gi|297803756|ref|XP_002869762.1| hypothetical protein ARALYDRAFT_492485 [Arabidopsis lyrata subsp.
lyrata]
gi|297315598|gb|EFH46021.1| hypothetical protein ARALYDRAFT_492485 [Arabidopsis lyrata subsp.
lyrata]
Length = 590
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 137/451 (30%), Positives = 218/451 (48%), Gaps = 68/451 (15%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMK 156
G +H ++ ++ R ++I A+ M G +NLV L+L C RI+ L + GL
Sbjct: 58 GFKH-----SVENIDLRGESSINAEWMAYIGGFVNLVSLNLSDCQRINSSTLWPITGLTS 112
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L L++ C +TD+ +K L + NLK L IS + VT GI+ L LQKL+LL+L G PV
Sbjct: 113 LTELDLSRCFKVTDAGIKHLQSVVNLKKLWISQTGVTKVGISLLASLQKLSLLDLGGLPV 172
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
T L +L L L YL++ +++ G + +L LNL + +T +
Sbjct: 173 TDHNLIALQELTKLEYLDIWGSNVTNQGAISILQFSNLSFLNLSWTSVTQT-----PNIP 227
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELS------DTQ--------------VGSSG 316
+LE L+++ C I E + + L +LK L LS +T+ V +
Sbjct: 228 HLECLHMNMCTIVSEPKTHCS-LASLKKLVLSGANFSAETEALSFTNKSSITYLDVSKTS 286
Query: 317 LRHLS---GLTNLESINLSFTGISDGSLRKLAGL-SSLKSLNLDARQITDTGLAAL---- 368
L++ S + NLE ++LS T D S+ +A + +LK+LN+ +IT G+ L
Sbjct: 287 LQNFSFIETMINLEHLDLSSTAFGDDSVGFVACVGENLKNLNVSDTKITSAGVGNLAGHV 346
Query: 369 ----------------------TSLTGLTHLDLFGARITDSGA----AYLRNFKNLRSLE 402
T + + LDL I + A A L++ +L++L
Sbjct: 347 PQLETFSLSQTFVDDLSILLISTMMPCVKALDLGMTSIREEQAEPSLAALQSLTSLKTLS 406
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ L D + + L+ LT L+L ++ +LTD TL +S L LVSL V ++ +TS GL
Sbjct: 407 LEHPYLGDTALSALSSLTGLTHLSL-RSTSLTDSTLHHLSSLPNLVSLGVRDAVLTSNGL 465
Query: 463 RHLKPLKNLRSLTLESCK-VTANDIKRLQSR 492
+P K LR+L L+ C +T +DI L R
Sbjct: 466 EKFRPPKRLRTLDLKGCWLLTKDDIAGLCKR 496
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 125/421 (29%), Positives = 195/421 (46%), Gaps = 54/421 (12%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S+ ++DL G S + + ++ NL SL+ + C +I+ L + GL++LT L R
Sbjct: 62 SVENIDLRGESSINAEWMAYIGGFVNLVSLNLSDCQRINSSTLWPITGLTSLTELDLSRC 121
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T G+K ++NL KL + + G+ L L KL L++ +TD ++ L
Sbjct: 122 FKVTDAGIKHLQSVVNLKKLWISQTGVTKVGISLLASLQKLSLLDLGGLP-VTDHNLIAL 180
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-------CL-------- 221
LT L+ L I S VT+ G + L+ LNL VT CL
Sbjct: 181 QELTKLEYLDIWGSNVTNQGAISILQFSNLSFLNLSWTSVTQTPNIPHLECLHMNMCTIV 240
Query: 222 ---DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
+ +L SL L L+ S + E S + L ++ + + ++ + NL
Sbjct: 241 SEPKTHCSLASLKKLVLSGANFSAE-TEALSFTNKSSITYLDVSKTSLQNFSFIETMINL 299
Query: 279 ESLNLDSCGIGDE--GLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTG 335
E L+L S GD+ G V G NLK L +SDT++ S+G+ +L+G + LE+ +LS T
Sbjct: 300 EHLDLSSTAFGDDSVGFVACVG-ENLKNLNVSDTKITSAGVGNLAGHVPQLETFSLSQTF 358
Query: 336 ISD-----------------------------GSLRKLAGLSSLKSLNLDARQITDTGLA 366
+ D SL L L+SLK+L+L+ + DT L+
Sbjct: 359 VDDLSILLISTMMPCVKALDLGMTSIREEQAEPSLAALQSLTSLKTLSLEHPYLGDTALS 418
Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
AL+SLTGLTHL L +TDS +L + NL SL + LT G++ + L L+
Sbjct: 419 ALSSLTGLTHLSLRSTSLTDSTLHHLSSLPNLVSLGVRDAVLTSNGLEKFRPPKRLRTLD 478
Query: 427 L 427
L
Sbjct: 479 L 479
>gi|46446916|ref|YP_008281.1| hypothetical protein pc1282 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400557|emb|CAF24006.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila
UWE25]
Length = 1082
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 108/318 (33%), Positives = 164/318 (51%), Gaps = 30/318 (9%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LK+C NL++L C ++D GL HL L L L + T G+
Sbjct: 781 LTDAHLLALKNCKNLKALHLQECPNLTDAGLAHLTSLVTLQHLDLSYCSNFTDAGLAHLR 840
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ L L+L C + GL +L L+ L+ L++ +C+ TD+ + L+ L L+ L +
Sbjct: 841 PLVALTHLNLRWCRNLTDAGLAHLTPLVALKYLDLSYCSNFTDAGLTHLTPLVTLQHLDL 900
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
S CS TD+G+A+L+ L LT LNL C T A L L+ L +L +LNLN C
Sbjct: 901 SCCSNFTDAGLAHLRPLVALTHLNLRWCHNFTDAGLAHLTPLVALQHLNLNLCW------ 954
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKC 304
++TD L HL+ L L++L+L C D GL +LT L L+
Sbjct: 955 -----------------KLTDAGLAHLRPLVALQNLDLSYCSNFTDAGLAHLTPLVVLQH 997
Query: 305 LELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQIT 361
L+LS ++ +GL HL+ L L+ ++LS+ ++D LR L L +L+ L L + T
Sbjct: 998 LDLSSCKKLTDAGLAHLTPLVALQHLDLSWCNHLTDAGLRHLTPLLALQDLYLYSCENFT 1057
Query: 362 DTGLAALTSLTGLTHLDL 379
+ GLA S HL+L
Sbjct: 1058 EVGLAHFKSSVASLHLNL 1075
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 108/297 (36%), Positives = 155/297 (52%), Gaps = 31/297 (10%)
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
+TD+ + LK + L L+L+ CP +T A L L++L +L +L+L+ C
Sbjct: 781 LTDAHLLALKNCKNLKALHLQECPNLTDAGLAHLTSLVTLQHLDLSYC------------ 828
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD 309
+ TD L HL+ L L LNL C + D GL +LT L LK L+LS
Sbjct: 829 -----------SNFTDAGLAHLRPLVALTHLNLRWCRNLTDAGLAHLTPLVALKYLDLSY 877
Query: 310 -TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA 366
+ +GL HL+ L L+ ++LS + +D L L L +L LNL TD GLA
Sbjct: 878 CSNFTDAGLTHLTPLVTLQHLDLSCCSNFTDAGLAHLRPLVALTHLNLRWCHNFTDAGLA 937
Query: 367 ALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTL 424
LT L L HL+L ++TD+G A+LR L++L++ TDAG+ H+ L L
Sbjct: 938 HLTPLVALQHLNLNLCWKLTDAGLAHLRPLVALQNLDLSYCSNFTDAGLAHLTPLVVLQH 997
Query: 425 LNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 480
L+LS LTD L ++ L L L++S + +T AGLRHL PL L+ L L SC+
Sbjct: 998 LDLSSCKKLTDAGLAHLTPLVALQHLDLSWCNHLTDAGLRHLTPLLALQDLYLYSCE 1054
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 107/332 (32%), Positives = 164/332 (49%), Gaps = 45/332 (13%)
Query: 102 LRGLSN-LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 159
L+ SN + L+F +N +T + A NL L L+ C + GL +L L+ L+
Sbjct: 763 LKYFSNEIEELNFSKNIFLTDAHLLALKNCKNLKALHLQECPNLTDAGLAHLTSLVTLQH 822
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTA 218
L++ +C S TD+G+A+L+ L LT LNL C +T
Sbjct: 823 LDLSYC------------------------SNFTDAGLAHLRPLVALTHLNLRWCRNLTD 858
Query: 219 ACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLT 276
A L L+ L +L YL+L+ C +D G + + +L+ L+L + TD L HL+ L
Sbjct: 859 AGLAHLTPLVALKYLDLSYCSNFTDAGLTHLTPLVTLQHLDLSCCSNFTDAGLAHLRPLV 918
Query: 277 NLESLNLDSC-GIGDEGLVNLTGLCNLK------CLELSDTQVGSSGLRHLSGLTNLESI 329
L LNL C D GL +LT L L+ C +L+D +GL HL L L+++
Sbjct: 919 ALTHLNLRWCHNFTDAGLAHLTPLVALQHLNLNLCWKLTD-----AGLAHLRPLVALQNL 973
Query: 330 NLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITD 386
+LS+ + +D L L L L+ L+L + +++TD GLA LT L L HLDL + +TD
Sbjct: 974 DLSYCSNFTDAGLAHLTPLVVLQHLDLSSCKKLTDAGLAHLTPLVALQHLDLSWCNHLTD 1033
Query: 387 SGAAYLRNFKNLRSLEICG-GGLTDAGVKHIK 417
+G +L L+ L + T+ G+ H K
Sbjct: 1034 AGLRHLTPLLALQDLYLYSCENFTEVGLAHFK 1065
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 156/303 (51%), Gaps = 41/303 (13%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQ 204
L+ LK L++L+++ C +TD+ + L+ L L+ L +S CS TD+G+A+L+ L
Sbjct: 784 AHLLALKNCKNLKALHLQECPNLTDAGLAHLTSLVTLQHLDLSYCSNFTDAGLAHLRPLV 843
Query: 205 KLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF- 261
LT LNL C +T A L L+ L +L YL+L+ C +D G + + +L+ L+L
Sbjct: 844 ALTHLNLRWCRNLTDAGLAHLTPLVALKYLDLSYCSNFTDAGLTHLTPLVTLQHLDLSCC 903
Query: 262 NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLK------CLELSDTQVGS 314
+ TD L HL+ L L LNL C D GL +LT L L+ C +L+D
Sbjct: 904 SNFTDAGLAHLRPLVALTHLNLRWCHNFTDAGLAHLTPLVALQHLNLNLCWKLTD----- 958
Query: 315 SGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT 372
+GL HL L L++++LS+ + +D L L L L+ L+L + +++TD GLA LT L
Sbjct: 959 AGLAHLRPLVALQNLDLSYCSNFTDAGLAHLTPLVVLQHLDLSSCKKLTDAGLAHLTPLV 1018
Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
L HLDL C LTDAG++H+ L +L L L N
Sbjct: 1019 ALQHLDL----------------------SWCNH-LTDAGLRHLTPLLALQDLYLYSCEN 1055
Query: 433 LTD 435
T+
Sbjct: 1056 FTE 1058
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 98/283 (34%), Positives = 153/283 (54%), Gaps = 10/283 (3%)
Query: 13 ELVYSR--CLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SD 68
EL +S+ LT+ L A ++C L+ L L + P + D + + S +L +DLS S+
Sbjct: 772 ELNFSKNIFLTDAHLLALKNCKNLKALHLQECPNLTDAGLAHLTS-LVTLQHLDLSYCSN 830
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
TD+GL HL+ L L+ +C ++D GL HL L L L + T G+
Sbjct: 831 FTDAGLAHLRPLVALTHLNLRWCRNLTDAGLAHLTPLVALKYLDLSYCSNFTDAGLTHLT 890
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ L LDL C+ GL +L+ L+ L LN++WC+ TD+ + L+ L L+ L +
Sbjct: 891 PLVTLQHLDLSCCSNFTDAGLAHLRPLVALTHLNLRWCHNFTDAGLAHLTPLVALQHLNL 950
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
+ C K+TD+G+A+L+ L L L+L C T A L L+ L L +L+L+ C +L+D G
Sbjct: 951 NLCWKLTDAGLAHLRPLVALQNLDLSYCSNFTDAGLAHLTPLVVLQHLDLSSCKKLTDAG 1010
Query: 245 CEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC 286
+ + +L+ L+L + N +TD L HL L L+ L L SC
Sbjct: 1011 LAHLTPLVALQHLDLSWCNHLTDAGLRHLTPLLALQDLYLYSC 1053
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 129/245 (52%), Gaps = 10/245 (4%)
Query: 246 EKFSKIGSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
EK K S ++ L F++ +TD L+ LK NL++L+L C + D GL +LT L
Sbjct: 760 EKVLKYFSNEIEELNFSKNIFLTDAHLLALKNCKNLKALHLQECPNLTDAGLAHLTSLVT 819
Query: 302 LKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-R 358
L+ L+LS + +GL HL L L +NL + ++D L L L +LK L+L
Sbjct: 820 LQHLDLSYCSNFTDAGLAHLRPLVALTHLNLRWCRNLTDAGLAHLTPLVALKYLDLSYCS 879
Query: 359 QITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI 416
TD GL LT L L HLDL + TD+G A+LR L L + TDAG+ H+
Sbjct: 880 NFTDAGLTHLTPLVTLQHLDLSCCSNFTDAGLAHLRPLVALTHLNLRWCHNFTDAGLAHL 939
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLT 475
L +L LNL+ LTD L + L L +L++S S T AGL HL PL L+ L
Sbjct: 940 TPLVALQHLNLNLCWKLTDAGLAHLRPLVALQNLDLSYCSNFTDAGLAHLTPLVVLQHLD 999
Query: 476 LESCK 480
L SCK
Sbjct: 1000 LSSCK 1004
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 110/199 (55%), Gaps = 11/199 (5%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DLS S+ TD+GL HL LQ LD + C +D GL HLR L LT L+ R
Sbjct: 869 ALKYLDLSYCSNFTDAGLTHLTPLVTLQHLDLSCCSNFTDAGLAHLRPLVALTHLNLRWC 928
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+ T G+ L+ L L+L C ++ GL +L+ L+ L++L++ +C+ TD+ +
Sbjct: 929 HNFTDAGLAHLTPLVALQHLNLNLCWKLTDAGLAHLRPLVALQNLDLSYCSNFTDAGLAH 988
Query: 176 LSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYL 233
L+ L L+ L + SC K+TD+G+A+L L L L+L C +T A L L+ L +L L
Sbjct: 989 LTPLVVLQHLDLSSCKKLTDAGLAHLTPLVALQHLDLSWCNHLTDAGLRHLTPLLALQDL 1048
Query: 234 NLNRCQLSDDGCEKFSKIG 252
L CE F+++G
Sbjct: 1049 YLY-------SCENFTEVG 1060
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 2/149 (1%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+ TD+GL HL LQ L+ N C +++D GL HLR L L +L + T G+
Sbjct: 930 NFTDAGLAHLTPLVALQHLNLNLCWKLTDAGLAHLRPLVALQNLDLSYCSNFTDAGLAHL 989
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L+ L LDL C ++ GL +L L+ L+ L++ WCN +TD+ ++ L+ L L+ L
Sbjct: 990 TPLVVLQHLDLSSCKKLTDAGLAHLTPLVALQHLDLSWCNHLTDAGLRHLTPLLALQDLY 1049
Query: 187 I-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
+ SC T+ G+A+ K LNL+ C
Sbjct: 1050 LYSCENFTEVGLAHFKSSVASLHLNLKWC 1078
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 59 LLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L +DLS +TD+GL HL LQ LD ++C ++D GL HL L L L
Sbjct: 995 LQHLDLSSCKKLTDAGLAHLTPLVALQHLDLSWCNHLTDAGLRHLTPLLALQDLYLYSCE 1054
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIH 145
T G+ F + + L+L+ C R
Sbjct: 1055 NFTEVGLAHFKSSVASLHLNLKWCKRFQ 1082
>gi|296124076|ref|YP_003631854.1| ribonuclease inhibitor [Planctomyces limnophilus DSM 3776]
gi|296016416|gb|ADG69655.1| Leucine-rich repeat, ribonuclease inhibitor subtype [Planctomyces
limnophilus DSM 3776]
Length = 474
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 102/317 (32%), Positives = 150/317 (47%), Gaps = 25/317 (7%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I D D+ ++ LT+L L++ K+TD G+ LK L L +L LE +T + L++
Sbjct: 117 IGDDDLALVAKLTHLTELRLEGPKITDKGVLLLKPLTNLVVLGLENTQLTDTGAEVLASF 176
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT----------- 276
+L L L R + D SK+ L+ L+L F +TDE + L GL+
Sbjct: 177 PNLEVLYLRRTNILDPALAHLSKLAKLRALDLRFTNVTDEGMKSLAGLSQLRDLRLQATR 236
Query: 277 -------------NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
NL+ LN+ D GL L L+ LEL DT++ S GL L GL
Sbjct: 237 VTDASLPLIAKLPNLQKLNVWGENFTDAGLSQLADTKTLRILELDDTRLTSEGLIKLGGL 296
Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
TNLE +++ T I + L + + ++ L L TD GL A++ L L LDL
Sbjct: 297 TNLEELHVRRTRIKNDGLAVVKNMPKMRRLLLRDTLCTDPGLEAVSGLKNLVELDLTEGI 356
Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
D G L +L L + +DAG++ I+DL L LNL Q +TD + I+G
Sbjct: 357 FGDDGVKNLAGLTSLEDLSLWATTTSDAGIESIRDLKKLKALNLEQ-TRITDAAAKTIAG 415
Query: 444 LTGLVSLNVSNSRITSA 460
L LN+S + +T A
Sbjct: 416 FGELTELNLSQTEVTDA 432
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 99/319 (31%), Positives = 159/319 (49%), Gaps = 26/319 (8%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I+D G+ L+ L+NL L N +T G + A NL L L R + L +L
Sbjct: 140 KITDKGVLLLKPLTNLVVLGLE-NTQLTDTGAEVLASFPNLEVLYLRRTNILDPALAHLS 198
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L KL +L++++ N +TD MK L+GL+ L+ L++ ++VTD+ + + L L LN+
Sbjct: 199 KLAKLRALDLRFTN-VTDEGMKSLAGLSQLRDLRLQATRVTDASLPLIAKLPNLQKLNVW 257
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
G +D G + + +L++L L +T E L+ L
Sbjct: 258 GE------------------------NFTDAGLSQLADTKTLRILELDDTRLTSEGLIKL 293
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
GLTNLE L++ I ++GL + + ++ L L DT GL +SGL NL ++L+
Sbjct: 294 GGLTNLEELHVRRTRIKNDGLAVVKNMPKMRRLLLRDTLCTDPGLEAVSGLKNLVELDLT 353
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
D ++ LAGL+SL+ L+L A +D G+ ++ L L L+L RITD+ A +
Sbjct: 354 EGIFGDDGVKNLAGLTSLEDLSLWATTTSDAGIESIRDLKKLKALNLEQTRITDAAAKTI 413
Query: 393 RNFKNLRSLEICGGGLTDA 411
F L L + +TDA
Sbjct: 414 AGFGELTELNLSQTEVTDA 432
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 92/182 (50%), Gaps = 1/182 (0%)
Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
++T +G L ++ LT+L + L I+D + L L++L L L+ Q+TDTG
Sbjct: 113 AETSIGDDDLALVAKLTHLTELRLEGPKITDKGVLLLKPLTNLVVLGLENTQLTDTGAEV 172
Query: 368 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
L S L L L I D A+L LR+L++ +TD G+K + LS L L L
Sbjct: 173 LASFPNLEVLYLRRTNILDPALAHLSKLAKLRALDLRFTNVTDEGMKSLAGLSQLRDLRL 232
Query: 428 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 487
Q +TD +L LI+ L L LNV T AGL L K LR L L+ ++T+ +
Sbjct: 233 -QATRVTDASLPLIAKLPNLQKLNVWGENFTDAGLSQLADTKTLRILELDDTRLTSEGLI 291
Query: 488 RL 489
+L
Sbjct: 292 KL 293
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 115/227 (50%), Gaps = 9/227 (3%)
Query: 20 LTEVSLEAFRDCA----LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLI 75
T V+ E + A L+DL L Q V D + +IA + +L +++ G + TD+GL
Sbjct: 210 FTNVTDEGMKSLAGLSQLRDLRL-QATRVTDASLPLIA-KLPNLQKLNVWGENFTDAGLS 267
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
L D L+ L+ + +++ GL L GL+NL L RR I G+ + + +
Sbjct: 268 QLADTKTLRILELDDT-RLTSEGLIKLGGLTNLEELHVRRTR-IKNDGLAVVKNMPKMRR 325
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
L L GL + GL L L++ D +K L+GLT+L+ L + + +D+
Sbjct: 326 LLLRDTLCTDPGLEAVSGLKNLVELDLTE-GIFGDDGVKNLAGLTSLEDLSLWATTTSDA 384
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
GI ++ L+KL LNLE +T A +++ G L LNL++ +++D
Sbjct: 385 GIESIRDLKKLKALNLEQTRITDAAAKTIAGFGELTELNLSQTEVTD 431
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 108/236 (45%), Gaps = 25/236 (10%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ + L ++DL ++VTD G+ L S L+ L +++D L + L NL L+
Sbjct: 198 SKLAKLRALDLRFTNVTDEGMKSLAGLSQLRDLRLQ-ATRVTDASLPLIAKLPNLQKLNV 256
Query: 114 RRNN-----------------------AITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
N +T++G+ GL NL +L + R + GL
Sbjct: 257 WGENFTDAGLSQLADTKTLRILELDDTRLTSEGLIKLGGLTNLEELHVRRTRIKNDGLAV 316
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
+K + K+ L ++ C TD ++ +SGL NL L ++ D G+ L GL L L+
Sbjct: 317 VKNMPKMRRLLLRDTLC-TDPGLEAVSGLKNLVELDLTEGIFGDDGVKNLAGLTSLEDLS 375
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
L + A ++S+ L L LNL + +++D + + G L LNL E+TD
Sbjct: 376 LWATTTSDAGIESIRDLKKLKALNLEQTRITDAAAKTIAGFGELTELNLSQTEVTD 431
>gi|290979790|ref|XP_002672616.1| predicted protein [Naegleria gruberi]
gi|284086194|gb|EFC39872.1| predicted protein [Naegleria gruberi]
Length = 559
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 105/394 (26%), Positives = 198/394 (50%), Gaps = 10/394 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSG---LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110
S+ L S+++SG+ + D G + +K + L D C++ G + + + LTS
Sbjct: 168 SEMKQLTSLNISGNRIGDEGAKLISEMKQLTLLNIADNRICVE----GAKSISEMKQLTS 223
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
LS +N I G K + + L L++ G + + +L SL+I N I
Sbjct: 224 LSIS-DNEIGVVGAKLISEMNQLTLLNISNNEIGDEGAKFISEMKQLISLDIS-NNLIDI 281
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
K +S + L SL+I +++ D G+ ++ +++LT L++ G + S+S + L
Sbjct: 282 EGAKSISEMKQLTSLEIYYNEIGDEGVKFISKMEQLTSLDISGNQIGVGGAKSISEMKQL 341
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
+L + ++ D+G S++ L LN+ +N+I DE + + + L SL++ IG
Sbjct: 342 TFLQIFSNRIGDEGANSISEMKQLTSLNIYYNQIGDEGVKFISEMEQLTSLDIGGNQIGV 401
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
G +++ + L L++ ++G G++ +S + L S+N+S I D + ++ + L
Sbjct: 402 GGAKSISEMKQLTFLQIFSNRIGDEGVKFISEMKQLTSLNISGNRIGDEGAKSISEMKQL 461
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
L + + +I D G+ ++ + LT L ++ RI D G + K L SL I G + D
Sbjct: 462 TLLYISSNEIGDEGVKFISEMKQLTLLQIYSNRIGDEGVKSISEMKQLTSLNISGNRIGD 521
Query: 411 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 444
GVK I ++ LT LN+S N + D+ ++L++ L
Sbjct: 522 EGVKSISEMKQLTSLNISNN-RIGDEGVKLLTSL 554
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/323 (26%), Positives = 165/323 (51%), Gaps = 1/323 (0%)
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
CN I +S + L SL IS +++ D G + +++LTLLN+ + S+
Sbjct: 156 CNEIGVEGATSISEMKQLTSLNISGNRIGDEGAKLISEMKQLTLLNIADNRICVEGAKSI 215
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
S + L L+++ ++ G + S++ L +LN+ NEI DE + + L SL++
Sbjct: 216 SEMKQLTSLSISDNEIGVVGAKLISEMNQLTLLNISNNEIGDEGAKFISEMKQLISLDIS 275
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
+ I EG +++ + L LE+ ++G G++ +S + L S+++S I G + +
Sbjct: 276 NNLIDIEGAKSISEMKQLTSLEIYYNEIGDEGVKFISKMEQLTSLDISGNQIGVGGAKSI 335
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
+ + L L + + +I D G +++ + LT L+++ +I D G ++ + L SL+I
Sbjct: 336 SEMKQLTFLQIFSNRIGDEGANSISEMKQLTSLNIYYNQIGDEGVKFISEMEQLTSLDIG 395
Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
G + G K I ++ LT L + N + D+ ++ IS + L SLN+S +RI G +
Sbjct: 396 GNQIGVGGAKSISEMKQLTFLQIFSN-RIGDEGVKFISEMKQLTSLNISGNRIGDEGAKS 454
Query: 465 LKPLKNLRSLTLESCKVTANDIK 487
+ +K L L + S ++ +K
Sbjct: 455 ISEMKQLTLLYISSNEIGDEGVK 477
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/316 (24%), Positives = 149/316 (47%), Gaps = 26/316 (8%)
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
N+K+ D + K +S + L SL I+ +++ D G+ ++ +++LTLL++ C
Sbjct: 105 NVKFSVYSLD-NAKFISEMKQLTSLGIAENRIGDEGVKFISEMKQLTLLDI--------C 155
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
+ + +G S++ L LN+ N I DE + + L
Sbjct: 156 CNEIGV----------------EGATSISEMKQLTSLNISGNRIGDEGAKLISEMKQLTL 199
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
LN+ I EG +++ + L L +SD ++G G + +S + L +N+S I D
Sbjct: 200 LNIADNRICVEGAKSISEMKQLTSLSISDNEIGVVGAKLISEMNQLTLLNISNNEIGDEG 259
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
+ ++ + L SL++ I G +++ + LT L+++ I D G ++ + L S
Sbjct: 260 AKFISEMKQLISLDISNNLIDIEGAKSISEMKQLTSLEIYYNEIGDEGVKFISKMEQLTS 319
Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
L+I G + G K I ++ LT L + N + D+ IS + L SLN+ ++I
Sbjct: 320 LDISGNQIGVGGAKSISEMKQLTFLQIFSN-RIGDEGANSISEMKQLTSLNIYYNQIGDE 378
Query: 461 GLRHLKPLKNLRSLTL 476
G++ + ++ L SL +
Sbjct: 379 GVKFISEMEQLTSLDI 394
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 121/251 (48%), Gaps = 4/251 (1%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
D + S++ L L + N I DE + + + L L++ IG EG +++ + L
Sbjct: 114 DNAKFISEMKQLTSLGIAENRIGDEGVKFISEMKQLTLLDICCNEIGVEGATSISEMKQL 173
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L +S ++G G + +S + L +N++ I + ++ + L SL++ +I
Sbjct: 174 TSLNISGNRIGDEGAKLISEMKQLTLLNIADNRICVEGAKSISEMKQLTSLSISDNEIGV 233
Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
G ++ + LT L++ I D GA ++ K L SL+I + G K I ++ L
Sbjct: 234 VGAKLISEMNQLTLLNISNNEIGDEGAKFISEMKQLISLDISNNLIDIEGAKSISEMKQL 293
Query: 423 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV- 481
T L + N + D+ ++ IS + L SL++S ++I G + + +K L L + S ++
Sbjct: 294 TSLEIYYN-EIGDEGVKFISKMEQLTSLDISGNQIGVGGAKSISEMKQLTFLQIFSNRIG 352
Query: 482 --TANDIKRLQ 490
AN I ++
Sbjct: 353 DEGANSISEMK 363
>gi|168699408|ref|ZP_02731685.1| hypothetical protein GobsU_07802 [Gemmata obscuriglobus UQM 2246]
Length = 320
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/253 (37%), Positives = 141/253 (55%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N +TD+ MK L+ L NL SL++ VTD+G+ L L+KLT L L VT A + L+
Sbjct: 59 NKMTDAGMKELAALRNLTSLKLIGPVVTDAGLKALAPLKKLTTLQLTAAKVTDAGVKELA 118
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
+L SL L+L ++D G ++ + + L L+L ++TD L L L NL +L+L S
Sbjct: 119 SLASLTTLDLASTNVTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPLKNLVTLSLGS 178
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
+ L L L NLK L L DT++ +GL+ L+ LT+L ++ L+ T ++D L+ L
Sbjct: 179 TAVTGASLKELAPLTNLKTLHLYDTKMTDAGLKELAPLTSLTTLTLAATKVTDAGLKGLT 238
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
L +L LNL ++T GL L +L LT LDL +TD+G L NL+ L + G
Sbjct: 239 PLKNLSDLNLGGTKVTSAGLKELAALKNLTVLDLDVTAVTDAGLKELTPLTNLKVLRLVG 298
Query: 406 GGLTDAGVKHIKD 418
+T GVK KD
Sbjct: 299 AKVTTKGVKEFKD 311
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 137/237 (57%)
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
K+TD+G+ L L+ LT L L G VT A L +L+ L L L L +++D G ++ +
Sbjct: 60 KMTDAGMKELAALRNLTSLKLIGPVVTDAGLKALAPLKKLTTLQLTAAKVTDAGVKELAS 119
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+ SL L+L +TD + L LT L +L+L + D GL L L NL L L T
Sbjct: 120 LASLTTLDLASTNVTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPLKNLVTLSLGST 179
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
V + L+ L+ LTNL++++L T ++D L++LA L+SL +L L A ++TD GL LT
Sbjct: 180 AVTGASLKELAPLTNLKTLHLYDTKMTDAGLKELAPLTSLTTLTLAATKVTDAGLKGLTP 239
Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
L L+ L+L G ++T +G L KNL L++ +TDAG+K + L++L +L L
Sbjct: 240 LKNLSDLNLGGTKVTSAGLKELAALKNLTVLDLDVTAVTDAGLKELTPLTNLKVLRL 296
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 148/287 (51%), Gaps = 25/287 (8%)
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
+ +T + + G +T A + L+AL +L L L ++D G + + + L L L +
Sbjct: 49 RPVTAVGMVGNKMTDAGMKELAALRNLTSLKLIGPVVTDAGLKALAPLKKLTTLQLTAAK 108
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
+TD + L L +L +L+L S + D G+ L L L L+LS T+V +GL+ L+ L
Sbjct: 109 VTDAGVKELASLASLTTLDLASTNVTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPL 168
Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
NL +++L T ++ SL++LA L++LK+L+L ++TD GL L LT LT L L +
Sbjct: 169 KNLVTLSLGSTAVTGASLKELAPLTNLKTLHLYDTKMTDAGLKELAPLTSLTTLTLAATK 228
Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
+TD+G L KNL L + G +T AG+K + L +LT+L+L
Sbjct: 229 VTDAGLKGLTPLKNLSDLNLGGTKVTSAGLKELAALKNLTVLDLDVTA------------ 276
Query: 444 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 490
+T AGL+ L PL NL+ L L KVT +K +
Sbjct: 277 -------------VTDAGLKELTPLTNLKVLRLVGAKVTTKGVKEFK 310
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 127/239 (53%), Gaps = 2/239 (0%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+++D G++ L L NLTSL +T G+KA A L L L L G+ L
Sbjct: 60 KMTDAGMKELAALRNLTSLKL-IGPVVTDAGLKALAPLKKLTTLQLTAAKVTDAGVKELA 118
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L L +L++ N +TD+ +K L+ LT L +L +S +KVTD+G+ L L+ L L+L
Sbjct: 119 SLASLTTLDLASTN-VTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPLKNLVTLSLG 177
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
VT A L L+ L +L L+L +++D G ++ + + SL L L ++TD L L
Sbjct: 178 STAVTGASLKELAPLTNLKTLHLYDTKMTDAGLKELAPLTSLTTLTLAATKVTDAGLKGL 237
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
L NL LNL + GL L L NL L+L T V +GL+ L+ LTNL+ + L
Sbjct: 238 TPLKNLSDLNLGGTKVTSAGLKELAALKNLTVLDLDVTAVTDAGLKELTPLTNLKVLRL 296
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 119/202 (58%), Gaps = 1/202 (0%)
Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
D G+ L L NL L+L V +GL+ L+ L L ++ L+ ++D +++LA L+S
Sbjct: 63 DAGMKELAALRNLTSLKLIGPVVTDAGLKALAPLKKLTTLQLTAAKVTDAGVKELASLAS 122
Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409
L +L+L + +TD G+ L LT LT LDL G ++TD+G L KNL +L + +T
Sbjct: 123 LTTLDLASTNVTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPLKNLVTLSLGSTAVT 182
Query: 410 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 469
A +K + L++L L+L + +TD L+ ++ LT L +L ++ +++T AGL+ L PLK
Sbjct: 183 GASLKELAPLTNLKTLHL-YDTKMTDAGLKELAPLTSLTTLTLAATKVTDAGLKGLTPLK 241
Query: 470 NLRSLTLESCKVTANDIKRLQS 491
NL L L KVT+ +K L +
Sbjct: 242 NLSDLNLGGTKVTSAGLKELAA 263
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 124/240 (51%), Gaps = 3/240 (1%)
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
N++TD + L L NL SL L + D GL L L L L+L+ +V +G++ L+
Sbjct: 59 NKMTDAGMKELAALRNLTSLKLIGPVVTDAGLKALAPLKKLTTLQLTAAKVTDAGVKELA 118
Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
L +L +++L+ T ++D +++LA L+ L +L+L ++TD GL L L L L L
Sbjct: 119 SLASLTTLDLASTNVTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPLKNLVTLSLGS 178
Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
+T + L NL++L + +TDAG+K + + +TD L+ +
Sbjct: 179 TAVTGASLKELAPLTNLKTLHLYDTKMTDAGLKELA-PLTSLTTLTLAATKVTDAGLKGL 237
Query: 442 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 501
+ L L LN+ +++TSAGL+ L LKNL L L+ VT +K L L NL R
Sbjct: 238 TPLKNLSDLNLGGTKVTSAGLKELAALKNLTVLDLDVTAVTDAGLKELTP--LTNLKVLR 295
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 122/235 (51%), Gaps = 3/235 (1%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+ L G VTD+GL L L +L +++D G++ L L++LT+L N
Sbjct: 75 LTSLKLIGPVVTDAGLKALAPLKKLTTLQLT-AAKVTDAGVKELASLASLTTLDLASTN- 132
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+T G+K A L L LDL GL L L L +L++ +T + +K L+
Sbjct: 133 VTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPLKNLVTLSL-GSTAVTGASLKELAP 191
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
LTNLK+L + +K+TD+G+ L L LT L L VT A L L+ L +L LNL
Sbjct: 192 LTNLKTLHLYDTKMTDAGLKELAPLTSLTTLTLAATKVTDAGLKGLTPLKNLSDLNLGGT 251
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+++ G ++ + + +L VL+L +TD L L LTNL+ L L + +G+
Sbjct: 252 KVTSAGLKELAALKNLTVLDLDVTAVTDAGLKELTPLTNLKVLRLVGAKVTTKGV 306
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 128/232 (55%), Gaps = 4/232 (1%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
P V D + +A L ++ L+ + VTD+G+ L ++L +LD ++D G++
Sbjct: 83 PVVTDAGLKALAPL-KKLTTLQLTAAKVTDAGVKELASLASLTTLDLA-STNVTDAGVKE 140
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L L+ LT+L +T G+K A L NLV L L L L L L++L+
Sbjct: 141 LAPLTRLTALDL-SGTKVTDAGLKELAPLKNLVTLSLGSTAVTGASLKELAPLTNLKTLH 199
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+ + +TD+ +K L+ LT+L +L ++ +KVTD+G+ L L+ L+ LNL G VT+A L
Sbjct: 200 L-YDTKMTDAGLKELAPLTSLTTLTLAATKVTDAGLKGLTPLKNLSDLNLGGTKVTSAGL 258
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
L+AL +L L+L+ ++D G ++ + + +LKVL L ++T + + K
Sbjct: 259 KELAALKNLTVLDLDVTAVTDAGLKELTPLTNLKVLRLVGAKVTTKGVKEFK 310
>gi|290970865|ref|XP_002668286.1| predicted protein [Naegleria gruberi]
gi|284081599|gb|EFC35542.1| predicted protein [Naegleria gruberi]
Length = 368
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 104/382 (27%), Positives = 190/382 (49%), Gaps = 28/382 (7%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI D + + + LTSL NN I +G+K+ + + LV
Sbjct: 13 QIGDKEAKFISEMKQLTSLDIY-NNRIGDEGVKSISEMKQLV------------------ 53
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
SLNI + N I D +K + + L SL I +++ D G+ ++ +++LT LN+
Sbjct: 54 ------SLNI-YNNRIGDEGVKSIIEMKQLTSLDIGGNRIGDEGVKFISEMKQLTSLNIS 106
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+ +S + L LN+ ++ D+G + ++ LK L++G N+I+ E +
Sbjct: 107 ENQIGDKEATFISEMKQLTSLNIYNNRIGDEGVKSIIEMKQLKSLDIGRNQISVEGAKFI 166
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
+ L SLN+ + I DEG+ +++ + L L +++ ++G + +S + L S+++
Sbjct: 167 SEMKQLVSLNIYNNRI-DEGVKSISEMKQLTSLNIAENRIGDKEAKFISEMKQLTSLDIY 225
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
I D ++ + L SLN+ +I D G+ ++ + LT LD+ RI D G ++
Sbjct: 226 NNRIGDEGAIFISKMKQLTSLNIYNNRIGDEGVKSIIEMKRLTSLDIGRNRIGDEGVKFI 285
Query: 393 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
K L SL+I + D GVK I ++ LT LN+S+N + D+ + IS + L SL++
Sbjct: 286 SEMKQLASLDISENRIGDEGVKSISEMKQLTSLNISEN-RIGDEGAKSISEMKRLKSLDI 344
Query: 453 SNSRITSAGLRHLKPLKNLRSL 474
++I G++ + +K L SL
Sbjct: 345 GGNQIGDEGVKFISEMKQLASL 366
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 100/369 (27%), Positives = 189/369 (51%), Gaps = 6/369 (1%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+ +SG+ + D + + L SLD + +I D G++ + + L SL+ NN
Sbjct: 4 LTSLIISGNQIGDKEAKFISEMKQLTSLDI-YNNRIGDEGVKSISEMKQLVSLNIY-NNR 61
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I +G+K+ + L LD+ RI G+ + + +L SLNI N I D + +S
Sbjct: 62 IGDEGVKSIIEMKQLTSLDI-GGNRIGDEGVKFISEMKQLTSLNISE-NQIGDKEATFIS 119
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
+ L SL I +++ D G+ + +++L L++ ++ +S + L LN+
Sbjct: 120 EMKQLTSLNIYNNRIGDEGVKSIIEMKQLKSLDIGRNQISVEGAKFISEMKQLVSLNIYN 179
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
++ D+G + S++ L LN+ N I D+ + + L SL++ + IGDEG + ++
Sbjct: 180 NRI-DEGVKSISEMKQLTSLNIAENRIGDKEAKFISEMKQLTSLDIYNNRIGDEGAIFIS 238
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
+ L L + + ++G G++ + + L S+++ I D ++ ++ + L SL++
Sbjct: 239 KMKQLTSLNIYNNRIGDEGVKSIIEMKRLTSLDIGRNRIGDEGVKFISEMKQLASLDISE 298
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
+I D G+ +++ + LT L++ RI D GA + K L+SL+I G + D GVK I
Sbjct: 299 NRIGDEGVKSISEMKQLTSLNISENRIGDEGAKSISEMKRLKSLDIGGNQIGDEGVKFIS 358
Query: 418 DLSSLTLLN 426
++ L LN
Sbjct: 359 EMKQLASLN 367
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 141/285 (49%), Gaps = 2/285 (0%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+++LT L + G + +S + L L++ ++ D+G + S++ L LN+ N
Sbjct: 1 MKQLTSLIISGNQIGDKEAKFISEMKQLTSLDIYNNRIGDEGVKSISEMKQLVSLNIYNN 60
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
I DE + + + L SL++ IGDEG+ ++ + L L +S+ Q+G +S
Sbjct: 61 RIGDEGVKSIIEMKQLTSLDIGGNRIGDEGVKFISEMKQLTSLNISENQIGDKEATFISE 120
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
+ L S+N+ I D ++ + + LKSL++ QI+ G ++ + L L+++
Sbjct: 121 MKQLTSLNIYNNRIGDEGVKSIIEMKQLKSLDIGRNQISVEGAKFISEMKQLVSLNIYNN 180
Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
RI D G + K L SL I + D K I ++ LT L++ N + D+ IS
Sbjct: 181 RI-DEGVKSISEMKQLTSLNIAENRIGDKEAKFISEMKQLTSLDIYNN-RIGDEGAIFIS 238
Query: 443 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 487
+ L SLN+ N+RI G++ + +K L SL + ++ +K
Sbjct: 239 KMKQLTSLNIYNNRIGDEGVKSIIEMKRLTSLDIGRNRIGDEGVK 283
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 128/262 (48%), Gaps = 30/262 (11%)
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
N+I D+ + + L SL++ + IGDEG+ +++ + L L + + ++G G++ +
Sbjct: 12 NQIGDKEAKFISEMKQLTSLDIYNNRIGDEGVKSISEMKQLVSLNIYNNRIGDEGVKSII 71
Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
+ L S+++ I D ++ ++ + L SLN+ QI D ++ + LT L+++
Sbjct: 72 EMKQLTSLDIGGNRIGDEGVKFISEMKQLTSLNISENQIGDKEATFISEMKQLTSLNIYN 131
Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLT-----------------------DAGVKHIKD 418
RI D G + K L+SL+I ++ D GVK I +
Sbjct: 132 NRIGDEGVKSIIEMKQLKSLDIGRNQISVEGAKFISEMKQLVSLNIYNNRIDEGVKSISE 191
Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 478
+ LT LN+++N + DK + IS + L SL++ N+RI G + +K L SL + +
Sbjct: 192 MKQLTSLNIAEN-RIGDKEAKFISEMKQLTSLDIYNNRIGDEGAIFISKMKQLTSLNIYN 250
Query: 479 CKVTAN------DIKRLQSRDL 494
++ ++KRL S D+
Sbjct: 251 NRIGDEGVKSIIEMKRLTSLDI 272
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 4/167 (2%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ DK I S+ L S+D+ + + D G I + L SL+ + +I D G++ +
Sbjct: 205 IGDKEAKFI-SEMKQLTSLDIYNNRIGDEGAIFISKMKQLTSLNI-YNNRIGDEGVKSII 262
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
+ LTSL R N I +G+K + + L LD+ G+ ++ + +L SLNI
Sbjct: 263 EMKRLTSLDIGR-NRIGDEGVKFISEMKQLASLDISENRIGDEGVKSISEMKQLTSLNIS 321
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
N I D K +S + LKSL I +++ D G+ ++ +++L LN
Sbjct: 322 E-NRIGDEGAKSISEMKRLKSLDIGGNQIGDEGVKFISEMKQLASLN 367
>gi|149174591|ref|ZP_01853217.1| hypothetical protein PM8797T_09969 [Planctomyces maris DSM 8797]
gi|148846701|gb|EDL61038.1| hypothetical protein PM8797T_09969 [Planctomyces maris DSM 8797]
Length = 346
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 127/228 (55%), Gaps = 1/228 (0%)
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+ ++ +++ SLK+L+ + ITD + + +GL NLE+L L+ IGD GL +L
Sbjct: 100 YEFTEADLAAIAQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILERTSIGDAGLYHLR 159
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
L LK L L +T V GL +L LT L +NLS T ISD L L G+ +L++L LDA
Sbjct: 160 DLRKLKVLRLWETDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKGMLNLQTLYLDA 219
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
Q++D GL L L L LDL A +TD+G +L +NL+ L + ++D G+ ++
Sbjct: 220 TQVSDRGLIYLKELPKLETLDLLDAEVTDAGLVHLSECRNLKKLTLADTQISDQGLVYLG 279
Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
L L L++ + N +D L + GL L LN +++IT AG L
Sbjct: 280 KLKELHELDI-RYTNTSDAGLVHLQGLKSLAYLNWESTKITDAGYTRL 326
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 125/243 (51%), Gaps = 8/243 (3%)
Query: 161 NIKWCNCI--------TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
N+ W + + T++D+ ++ L +LK L S S +TDS ++Y +GL L L LE
Sbjct: 87 NVTWISSVGYGDDYEFTEADLAAIAQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILE 146
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+ A L L L L L L ++D G + L LNL +I+D L+HL
Sbjct: 147 RTSIGDAGLYHLRDLRKLKVLRLWETDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHL 206
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
KG+ NL++L LD+ + D GL+ L L L+ L+L D +V +GL HLS NL+ + L+
Sbjct: 207 KGMLNLQTLYLDATQVSDRGLIYLKELPKLETLDLLDAEVTDAGLVHLSECRNLKKLTLA 266
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
T ISD L L L L L++ +D GL L L L +L+ +ITD+G L
Sbjct: 267 DTQISDQGLVYLGKLKELHELDIRYTNTSDAGLVHLQGLKSLAYLNWESTKITDAGYTRL 326
Query: 393 RNF 395
F
Sbjct: 327 HEF 329
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 120/235 (51%), Gaps = 2/235 (0%)
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
E T+ L + L +L+ L+ S I D + GL NL+ L L T +G +GL HL
Sbjct: 101 EFTEADLAAIAQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILERTSIGDAGLYHLRD 160
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
L L+ + L T ++D L L L+ L LNL +I+D GL L + L L L
Sbjct: 161 LRKLKVLRLWETDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKGMLNLQTLYLDAT 220
Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
+++D G YL+ L +L++ +TDAG+ H+ + +L L L+ + ++D+ L +
Sbjct: 221 QVSDRGLIYLKELPKLETLDLLDAEVTDAGLVHLSECRNLKKLTLA-DTQISDQGLVYLG 279
Query: 443 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 497
L L L++ + + AGL HL+ LK+L L ES K+T RL LP L
Sbjct: 280 KLKELHELDIRYTNTSDAGLVHLQGLKSLAYLNWESTKITDAGYTRLHEF-LPKL 333
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 115/224 (51%), Gaps = 1/224 (0%)
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
+ T A L +++ L SL L+ + ++D F + +L+ L L I D L H
Sbjct: 98 DDYEFTEADLAAIAQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILERTSIGDAGLYH 157
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
L+ L L+ L L + D GL L L L L LS+T++ +GL HL G+ NL+++ L
Sbjct: 158 LRDLRKLKVLRLWETDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKGMLNLQTLYL 217
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
T +SD L L L L++L+L ++TD GL L+ L L L +I+D G Y
Sbjct: 218 DATQVSDRGLIYLKELPKLETLDLLDAEVTDAGLVHLSECRNLKKLTLADTQISDQGLVY 277
Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
L K L L+I +DAG+ H++ L SL LN ++ +TD
Sbjct: 278 LGKLKELHELDIRYTNTSDAGLVHLQGLKSLAYLNW-ESTKITD 320
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 125/258 (48%), Gaps = 30/258 (11%)
Query: 87 DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG 146
D+ F ++ L + L +L L F ++ IT M F GL NL L LER +
Sbjct: 99 DYEF----TEADLAAIAQLKSLKILDFS-SSLITDSDMSYFQGLYNLEALILERTSIGDA 153
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
GL +L+ L KL+ L + W +TD + L LT L L +S +K++D+G+ +LKG
Sbjct: 154 GLYHLRDLRKLKVLRL-WETDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKG---- 208
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+LNL+ L L+ Q+SD G ++ L+ L+L E+TD
Sbjct: 209 -MLNLQT-------------------LYLDATQVSDRGLIYLKELPKLETLDLLDAEVTD 248
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
LVHL NL+ L L I D+GLV L L L L++ T +GL HL GL +L
Sbjct: 249 AGLVHLSECRNLKKLTLADTQISDQGLVYLGKLKELHELDIRYTNTSDAGLVHLQGLKSL 308
Query: 327 ESINLSFTGISDGSLRKL 344
+N T I+D +L
Sbjct: 309 AYLNWESTKITDAGYTRL 326
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 112/243 (46%), Gaps = 27/243 (11%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
+Q SL +D S S +TDS + + + NL++L I D GL HLR L L L
Sbjct: 111 AQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILERT-SIGDAGLYHLRDLRKLKVLRL 169
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+ +T G+ L L L+L GL++LKG++
Sbjct: 170 WETD-VTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKGML------------------ 210
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
NL++L + ++V+D G+ YLK L KL L+L VT A L LS +L L
Sbjct: 211 -------NLQTLYLDATQVSDRGLIYLKELPKLETLDLLDAEVTDAGLVHLSECRNLKKL 263
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
L Q+SD G K+ L L++ + +D LVHL+GL +L LN +S I D G
Sbjct: 264 TLADTQISDQGLVYLGKLKELHELDIRYTNTSDAGLVHLQGLKSLAYLNWESTKITDAGY 323
Query: 294 VNL 296
L
Sbjct: 324 TRL 326
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
D + T+ LAA+ L L LD + ITDS +Y + NL +L + + DAG+ H
Sbjct: 98 DDYEFTEADLAAIAQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILERTSIGDAGLYH 157
Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
++DL L +L L + ++TD L + LT L LN+S ++I+ AGL HLK + NL++L
Sbjct: 158 LRDLRKLKVLRLWE-TDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKGMLNLQTLY 216
Query: 476 LESCKVTANDIKRLQSRDLPNL 497
L++ +V+ + L ++LP L
Sbjct: 217 LDATQVSDRGLIYL--KELPKL 236
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 94/174 (54%), Gaps = 1/174 (0%)
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
D + + L ++ L +L+ ++ S + I+D + GL +L++L L+ I D GL L
Sbjct: 99 DYEFTEADLAAIAQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILERTSIGDAGLYHL 158
Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
L L L L+ +TD G +YL++ L L + ++DAG+ H+K + +L L L
Sbjct: 159 RDLRKLKVLRLWETDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKGMLNLQTLYLD 218
Query: 429 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
++D+ L + L L +L++ ++ +T AGL HL +NL+ LTL +++
Sbjct: 219 A-TQVSDRGLIYLKELPKLETLDLLDAEVTDAGLVHLSECRNLKKLTLADTQIS 271
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 9/110 (8%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
++DL ++VTD+GL+HL +C NL+ L QISD GL +L L L L R N
Sbjct: 238 TLDLLDAEVTDAGLVHLSECRNLKKLTLA-DTQISDQGLVYLGKLKELHELDIRYTNTSD 296
Query: 121 AQGMKAFAGLINLVKLDLERC-------TRIHGGLVNLKGLMKLESLNIK 163
A G+ GL +L L+ E TR+H L L + ++ K
Sbjct: 297 A-GLVHLQGLKSLAYLNWESTKITDAGYTRLHEFLPKLSRTQQFPTIIFK 345
>gi|290984426|ref|XP_002674928.1| predicted protein [Naegleria gruberi]
gi|284088521|gb|EFC42184.1| predicted protein [Naegleria gruberi]
Length = 612
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 121/437 (27%), Positives = 207/437 (47%), Gaps = 28/437 (6%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
G + + ++ L SL+ + I D +E + L LTSL + N I ++G+K
Sbjct: 95 GVKIDSESVTYIGQLKQLTSLEIQ-GMDIDDEHVESMAELKQLTSL-YISGNYIGSEGVK 152
Query: 126 AFAGLIN-LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
+ N L KL++ + G + L +L SL I + I D+ + LSGL +L +
Sbjct: 153 IISESFNKLTKLNISANYIDNVGAKYISQLKQLTSLEIACNDSIGDAGIIYLSGLEHLTN 212
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L IS K+ G Y+ ++LT LN+ C + L S+S L L L+++ ++S +G
Sbjct: 213 LDISRIKIGSGGAQYIGKFEQLTCLNINTCSIDDKVLQSISQLKKLIVLHISENEISIEG 272
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
+ SK+ L L + + I E ++ L L L++ + +EG + + L
Sbjct: 273 AKYISKLNQLTSLYISESGIRSEQARYISELKQLTYLDVTKNYVREEGAKYIRNMKKLTT 332
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG------SLRKLAGLSSLKS------ 352
L +S+ V G ++S +T L +++S I+ L++L LS L+S
Sbjct: 333 LLVSENYVCEQGAEYISEMTQLTKLDISVNNINKKGVFHICKLKQLTELSILESHFDGEG 392
Query: 353 ------------LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
LN ++ G+ ++ L LT L++ RI+D GA Y+ K L+
Sbjct: 393 LEYISELKNLTILNFPYSEMRGVGVKYISQLNQLTCLNIPYNRISDEGAKYISELKQLKE 452
Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
L I ++ G ++ DL +LT L ++ N NL + IS L L L++S++ I+S
Sbjct: 453 LSISDNSISSEGANYLTDLKNLTKLVITGN-NLGNDGAMHISELKKLTILDISHNSISSE 511
Query: 461 GLRHLKPLKNLRSLTLE 477
G +HL LKNL L ++
Sbjct: 512 GAKHLSDLKNLTELVIK 528
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/335 (25%), Positives = 163/335 (48%), Gaps = 2/335 (0%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+IS G +++ L+ LTSL + + I ++ + + L L LD+ + G ++
Sbjct: 267 EISIEGAKYISKLNQLTSL-YISESGIRSEQARYISELKQLTYLDVTKNYVREEGAKYIR 325
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+ KL +L + N + + + +S +T L L IS + + G+ ++ L++LT L++
Sbjct: 326 NMKKLTTLLVSE-NYVCEQGAEYISEMTQLTKLDISVNNINKKGVFHICKLKQLTELSIL 384
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
L+ +S L +L LN ++ G + S++ L LN+ +N I+DE ++
Sbjct: 385 ESHFDGEGLEYISELKNLTILNFPYSEMRGVGVKYISQLNQLTCLNIPYNRISDEGAKYI 444
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
L L+ L++ I EG LT L NL L ++ +G+ G H+S L L +++S
Sbjct: 445 SELKQLKELSISDNSISSEGANYLTDLKNLTKLVITGNNLGNDGAMHISELKKLTILDIS 504
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
IS + L+ L +L L + + + G +++ L LTHLD+ I+D G +
Sbjct: 505 HNSISSEGAKHLSDLKNLTELVIKGNNLGNDGAMSISELKQLTHLDVCDNNISDEGFKAI 564
Query: 393 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
L L I ++ GV+ I+ ++ T +++
Sbjct: 565 SKMNQLTRLSIYENSISGEGVEFIRKMTQSTFIDI 599
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 110/236 (46%), Gaps = 30/236 (12%)
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
+I E + ++ L L SL + I DE + ++ L L L +S +GS G++ +S
Sbjct: 97 KIDSESVTYIGQLKQLTSLEIQGMDIDDEHVESMAELKQLTSLYISGNYIGSEGVKIIS- 155
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF-G 381
ES N L LN+ A I + G ++ L LT L++
Sbjct: 156 ----ESFN------------------KLTKLNISANYIDNVGAKYISQLKQLTSLEIACN 193
Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
I D+G YL ++L +L+I + G ++I LT LN++ C++ DK L+ I
Sbjct: 194 DSIGDAGIIYLSGLEHLTNLDISRIKIGSGGAQYIGKFEQLTCLNIN-TCSIDDKVLQSI 252
Query: 442 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 497
S L L+ L++S + I+ G +++ L L SL ++ + I+ Q+R + L
Sbjct: 253 SQLKKLIVLHISENEISIEGAKYISKLNQLTSLY-----ISESGIRSEQARYISEL 303
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 80/178 (44%), Gaps = 35/178 (19%)
Query: 52 IASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG 104
I+S+G++ L+ + ++G+++ + G +H+ + L LD + IS G +HL
Sbjct: 460 ISSEGANYLTDLKNLTKLVITGNNLGNDGAMHISELKKLTILDISHN-SISSEGAKHLSD 518
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
L NLT L + NN + G + + L L LD+ C
Sbjct: 519 LKNLTELVIKGNN-LGNDGAMSISELKQLTHLDV--CD---------------------- 553
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
N I+D K +S + L L I + ++ G+ +++ + + T ++++ C +C D
Sbjct: 554 -NNISDEGFKAISKMNQLTRLSIYENSISGEGVEFIRKMTQSTFIDIQ-CWSNQSCQD 609
>gi|46447548|ref|YP_008913.1| hypothetical protein pc1914 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401189|emb|CAF24638.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 528
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 122/348 (35%), Positives = 180/348 (51%), Gaps = 33/348 (9%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
+ +T++ L+ LKDC N++ L F C ++D GL HL L L L +T G+
Sbjct: 203 ENTHLTNAHLLALKDCKNIEVLYFKKCRGVTDAGLAHLVPLKGLQHLDLSYCENLTDAGL 262
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
L L L+L C + GLV+L L+ L+ L++ +C +TD+ + L+ LT L+
Sbjct: 263 AYLKPLTALQHLNLSGCWNLTDAGLVHLTPLVGLQHLDLSYCENLTDAGLAHLTPLTALQ 322
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-L 240
L +S C +TD+G+A+L L L L+L C +T A L L+ L +L +L L C+ L
Sbjct: 323 HLGLSCCENLTDAGLAHLALLTTLQHLDLSCCYNLTDASLSHLTPLTALQHLYLIGCENL 382
Query: 241 SDDGCEKFSKIGSLKVLNLG--FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT 297
+D G + + +L+ L+L FN +TD L HL LT L+ LNL C + D GL +LT
Sbjct: 383 TDAGLAHLTPLTALQHLDLSCCFN-LTDAGLSHLTPLTGLQHLNLSRCYKLTDAGLAHLT 441
Query: 298 GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
L L+ L LS+ + +GL HL+ LT L+ ++L + +NL
Sbjct: 442 TLVALQHLNLSECRHLTDAGLAHLTPLTALQHLDLKY------------------CINL- 482
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEI 403
TD GLA LT LT L HLDL R+TD G + +LEI
Sbjct: 483 ----TDAGLAHLTPLTALQHLDLSRCRRLTDDGLDRFKTLATSLNLEI 526
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 128/382 (33%), Positives = 192/382 (50%), Gaps = 43/382 (11%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
N Q +DF I +E L+F N +T + A N+ L ++
Sbjct: 178 QNFQLVDFEKIINHFSKKIE---------VLNFSENTHLTNAHLLALKDCKNIEVLYFKK 228
Query: 141 CTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIA 198
C + GL +L L L+ L++ +C +TD+ + L LT L+ L +S C +TD+G+
Sbjct: 229 CRGVTDAGLAHLVPLKGLQHLDLSYCENLTDAGLAYLKPLTALQHLNLSGCWNLTDAGLV 288
Query: 199 YLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKV 256
+L L L L+L C +T A L L+ L +L +L L+ C+ L+D G + + +L+
Sbjct: 289 HLTPLVGLQHLDLSYCENLTDAGLAHLTPLTALQHLGLSCCENLTDAGLAHLALLTTLQH 348
Query: 257 LNLG--FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQV 312
L+L +N +TD L HL LT L+ L L C + D GL +LT L L+ L+LS +
Sbjct: 349 LDLSCCYN-LTDASLSHLTPLTALQHLYLIGCENLTDAGLAHLTPLTALQHLDLSCCFNL 407
Query: 313 GSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS 370
+GL HL+ LT L+ +NLS ++D L L L +L+ LNL + R +TD GLA LT
Sbjct: 408 TDAGLSHLTPLTGLQHLNLSRCYKLTDAGLAHLTTLVALQHLNLSECRHLTDAGLAHLTP 467
Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
LT L HLDL Y N LTDAG+ H+ L++L L+LS+
Sbjct: 468 LTALQHLDL----------KYCIN-------------LTDAGLAHLTPLTALQHLDLSRC 504
Query: 431 CNLTDKTLELISGLTGLVSLNV 452
LTD L+ L ++L +
Sbjct: 505 RRLTDDGLDRFKTLATSLNLEI 526
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 120/341 (35%), Positives = 172/341 (50%), Gaps = 34/341 (9%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQ 204
L+ LK +E L K C +TD+ + L L L+ L +S C +TD+G+AYLK L
Sbjct: 210 AHLLALKDCKNIEVLYFKKCRGVTDAGLAHLVPLKGLQHLDLSYCENLTDAGLAYLKPLT 269
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE- 263
L LNL GC L+D G + + L+ L+L + E
Sbjct: 270 ALQHLNLSGC-----------------------WNLTDAGLVHLTPLVGLQHLDLSYCEN 306
Query: 264 ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLS 321
+TD L HL LT L+ L L C + D GL +L L L+ L+LS + + L HL+
Sbjct: 307 LTDAGLAHLTPLTALQHLGLSCCENLTDAGLAHLALLTTLQHLDLSCCYNLTDASLSHLT 366
Query: 322 GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL 379
LT L+ + L ++D L L L++L+ L+L +TD GL+ LT LTGL HL+L
Sbjct: 367 PLTALQHLYLIGCENLTDAGLAHLTPLTALQHLDLSCCFNLTDAGLSHLTPLTGLQHLNL 426
Query: 380 FG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
++TD+G A+L L+ L + LTDAG+ H+ L++L L+L NLTD
Sbjct: 427 SRCYKLTDAGLAHLTTLVALQHLNLSECRHLTDAGLAHLTPLTALQHLDLKYCINLTDAG 486
Query: 438 LELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLE 477
L ++ LT L L++S R+T GL K L SL LE
Sbjct: 487 LAHLTPLTALQHLDLSRCRRLTDDGLDRFKTLAT--SLNLE 525
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 119/339 (35%), Positives = 173/339 (51%), Gaps = 32/339 (9%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 214
K+E LN +T++ + L N++ L C VTD+G+A+L L+ L L+L C
Sbjct: 195 KIEVLNFSENTHLTNAHLLALKDCKNIEVLYFKKCRGVTDAGLAHLVPLKGLQHLDLSYC 254
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLK 273
L+D G + +L+ LNL G +TD LVHL
Sbjct: 255 E-----------------------NLTDAGLAYLKPLTALQHLNLSGCWNLTDAGLVHLT 291
Query: 274 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINL 331
L L+ L+L C + D GL +LT L L+ L LS + + +GL HL+ LT L+ ++L
Sbjct: 292 PLVGLQHLDLSYCENLTDAGLAHLTPLTALQHLGLSCCENLTDAGLAHLALLTTLQHLDL 351
Query: 332 SF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGA-RITDSG 388
S ++D SL L L++L+ L L +TD GLA LT LT L HLDL +TD+G
Sbjct: 352 SCCYNLTDASLSHLTPLTALQHLYLIGCENLTDAGLAHLTPLTALQHLDLSCCFNLTDAG 411
Query: 389 AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
++L L+ L + LTDAG+ H+ L +L LNLS+ +LTD L ++ LT L
Sbjct: 412 LSHLTPLTGLQHLNLSRCYKLTDAGLAHLTTLVALQHLNLSECRHLTDAGLAHLTPLTAL 471
Query: 448 VSLNVSNS-RITSAGLRHLKPLKNLRSLTLESCKVTAND 485
L++ +T AGL HL PL L+ L L C+ +D
Sbjct: 472 QHLDLKYCINLTDAGLAHLTPLTALQHLDLSRCRRLTDD 510
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 157/298 (52%), Gaps = 11/298 (3%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWM-DVIASQGSSLLSVDLSG-SDVTDSGLIH 76
LT L A +DC ++ L + GV D + ++ +G L +DLS ++TD+GL +
Sbjct: 207 LTNAHLLALKDCKNIEVLYFKKCRGVTDAGLAHLVPLKG--LQHLDLSYCENLTDAGLAY 264
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
LK + LQ L+ + C ++D GL HL L L L +T G+ L L L
Sbjct: 265 LKPLTALQHLNLSGCWNLTDAGLVHLTPLVGLQHLDLSYCENLTDAGLAHLTPLTALQHL 324
Query: 137 DLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTD 194
L C + GL +L L L+ L++ C +TD+ + L+ LT L+ L I C +TD
Sbjct: 325 GLSCCENLTDAGLAHLALLTTLQHLDLSCCYNLTDASLSHLTPLTALQHLYLIGCENLTD 384
Query: 195 SGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIG 252
+G+A+L L L L+L C +T A L L+ L L +LNL+RC +L+D G + +
Sbjct: 385 AGLAHLTPLTALQHLDLSCCFNLTDAGLSHLTPLTGLQHLNLSRCYKLTDAGLAHLTTLV 444
Query: 253 SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELS 308
+L+ LNL +TD L HL LT L+ L+L C + D GL +LT L L+ L+LS
Sbjct: 445 ALQHLNLSECRHLTDAGLAHLTPLTALQHLDLKYCINLTDAGLAHLTPLTALQHLDLS 502
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 134/244 (54%), Gaps = 7/244 (2%)
Query: 57 SSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
++L ++LSG ++TD+GL+HL LQ LD ++C ++D GL HL L+ L L
Sbjct: 269 TALQHLNLSGCWNLTDAGLVHLTPLVGLQHLDLSYCENLTDAGLAHLTPLTALQHLGLSC 328
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+T G+ A L L LDL C + L +L L L+ L + C +TD+ +
Sbjct: 329 CENLTDAGLAHLALLTTLQHLDLSCCYNLTDASLSHLTPLTALQHLYLIGCENLTDAGLA 388
Query: 175 PLSGLTNLKSLQISCS-KVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFY 232
L+ LT L+ L +SC +TD+G+++L L L LNL C +T A L L+ L +L +
Sbjct: 389 HLTPLTALQHLDLSCCFNLTDAGLSHLTPLTGLQHLNLSRCYKLTDAGLAHLTTLVALQH 448
Query: 233 LNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIG 289
LNL+ C L+D G + + +L+ L+L + +TD L HL LT L+ L+L C +
Sbjct: 449 LNLSECRHLTDAGLAHLTPLTALQHLDLKYCINLTDAGLAHLTPLTALQHLDLSRCRRLT 508
Query: 290 DEGL 293
D+GL
Sbjct: 509 DDGL 512
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 102/285 (35%), Positives = 150/285 (52%), Gaps = 31/285 (10%)
Query: 204 QKLTLLNL-EGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF 261
+K+ +LN E +T A L +L ++ L +C+ ++D G + L+ L+L +
Sbjct: 194 KKIEVLNFSENTHLTNAHLLALKDCKNIEVLYFKKCRGVTDAGLAHLVPLKGLQHLDLSY 253
Query: 262 NE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLR 318
E +TD L +LK LT L+ LNL C + D GLV+LT L L+ L+LS + + +GL
Sbjct: 254 CENLTDAGLAYLKPLTALQHLNLSGCWNLTDAGLVHLTPLVGLQHLDLSYCENLTDAGLA 313
Query: 319 HLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTH 376
HL+ LT L+ + LS ++D L LA L++L+ L+L +TD L+ LT LT L H
Sbjct: 314 HLTPLTALQHLGLSCCENLTDAGLAHLALLTTLQHLDLSCCYNLTDASLSHLTPLTALQH 373
Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436
L L G LTDAG+ H+ L++L L+LS NLTD
Sbjct: 374 LYLIGCE-----------------------NLTDAGLAHLTPLTALQHLDLSCCFNLTDA 410
Query: 437 TLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 480
L ++ LTGL LN+S ++T AGL HL L L+ L L C+
Sbjct: 411 GLSHLTPLTGLQHLNLSRCYKLTDAGLAHLTTLVALQHLNLSECR 455
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL HL + LQ LD +CI ++D GL HL L+ L L R +T G+ F
Sbjct: 457 LTDAGLAHLTPLTALQHLDLKYCINLTDAGLAHLTPLTALQHLDLSRCRRLTDDGLDRFK 516
Query: 129 GLINLVKLDLER 140
L + L++ R
Sbjct: 517 TLATSLNLEIVR 528
>gi|46447554|ref|YP_008919.1| hypothetical protein pc1920 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401195|emb|CAF24644.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 517
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 110/318 (34%), Positives = 159/318 (50%), Gaps = 55/318 (17%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LK C NL+ L C I+D GL HL L+ L
Sbjct: 238 LTDAHLLALKVCKNLKVLHLEACQAITDDGLAHLTPLTALQ------------------- 278
Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
LDL +C ++ G GL +L L L+ L++ C+ +TD+ + L+ LT L+ L +
Sbjct: 279 ------HLDLSQCRKLTGIGLAHLTPLTALQHLDLSGCDNLTDAGLAHLAPLTALQHLNL 332
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
S C +TD+G+ +L L L L+L C + A L L L +L YL+L+ C L+D G
Sbjct: 333 SDCENLTDAGLVHLSPLIALQHLDLSYCWRLNYAGLAHLKPLTALQYLDLSHCINLTDAG 392
Query: 245 CEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNL 302
+ L+ LNL + E +TD L HL L L+ LNL C + D GL +LT L L
Sbjct: 393 LAHLKPLMRLQYLNLRYCENLTDAGLAHLTPLMALQHLNLSECYHLTDAGLTHLTPLTAL 452
Query: 303 KCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
+ L+LS + + +GL HL+ LT L+ ++LS+ + +T
Sbjct: 453 QHLDLSHCRSLTDAGLAHLTSLTVLQYLDLSY-----------------------CKNLT 489
Query: 362 DTGLAALTSLTGLTHLDL 379
D GLA LT LTGL HLDL
Sbjct: 490 DAGLARLTPLTGLQHLDL 507
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 109/306 (35%), Positives = 157/306 (51%), Gaps = 31/306 (10%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
K+E+LN +TD+ + L NLK L + +C +TD G+A+L L L L+L C
Sbjct: 226 KIEALNFSENAYLTDAHLLALKVCKNLKVLHLEACQAITDDGLAHLTPLTALQHLDLSQC 285
Query: 215 -PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVH 271
+T L L+ L +L +L+L+ C L+D G + + +L+ LNL E +TD LVH
Sbjct: 286 RKLTGIGLAHLTPLTALQHLDLSGCDNLTDAGLAHLAPLTALQHLNLSDCENLTDAGLVH 345
Query: 272 LKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESI 329
L L L+ L+L C + GL +L L L+ L+LS + +GL HL L L+ +
Sbjct: 346 LSPLIALQHLDLSYCWRLNYAGLAHLKPLTALQYLDLSHCINLTDAGLAHLKPLMRLQYL 405
Query: 330 NLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDS 387
NL + ++D L L L +L+ LNL + +TD GL LT LT L HLDL R
Sbjct: 406 NLRYCENLTDAGLAHLTPLMALQHLNLSECYHLTDAGLTHLTPLTALQHLDLSHCR---- 461
Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
LTDAG+ H+ L+ L L+LS NLTD L ++ LTGL
Sbjct: 462 -------------------SLTDAGLAHLTSLTVLQYLDLSYCKNLTDAGLARLTPLTGL 502
Query: 448 VSLNVS 453
L++S
Sbjct: 503 QHLDLS 508
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/244 (40%), Positives = 140/244 (57%), Gaps = 14/244 (5%)
Query: 247 KFSKIGSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNL 302
+FSK K+ L F+E +TD L+ LK NL+ L+L++C I D+GL +LT L L
Sbjct: 222 RFSK----KIEALNFSENAYLTDAHLLALKVCKNLKVLHLEACQAITDDGLAHLTPLTAL 277
Query: 303 KCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNL-DARQ 359
+ L+LS ++ GL HL+ LT L+ ++LS ++D L LA L++L+ LNL D
Sbjct: 278 QHLDLSQCRKLTGIGLAHLTPLTALQHLDLSGCDNLTDAGLAHLAPLTALQHLNLSDCEN 337
Query: 360 ITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIK 417
+TD GL L+ L L HLDL + R+ +G A+L+ L+ L++ LTDAG+ H+K
Sbjct: 338 LTDAGLVHLSPLIALQHLDLSYCWRLNYAGLAHLKPLTALQYLDLSHCINLTDAGLAHLK 397
Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 476
L L LNL NLTD L ++ L L LN+S +T AGL HL PL L+ L L
Sbjct: 398 PLMRLQYLNLRYCENLTDAGLAHLTPLMALQHLNLSECYHLTDAGLTHLTPLTALQHLDL 457
Query: 477 ESCK 480
C+
Sbjct: 458 SHCR 461
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 95/283 (33%), Positives = 147/283 (51%), Gaps = 11/283 (3%)
Query: 11 FNELVYSRCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SD 68
F+E Y LT+ L A + C L+ L L + D + + + ++L +DLS
Sbjct: 232 FSENAY---LTDAHLLALKVCKNLKVLHLEACQAITDDGLAHL-TPLTALQHLDLSQCRK 287
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+T GL HL + LQ LD + C ++D GL HL L+ L L+ +T G+ +
Sbjct: 288 LTGIGLAHLTPLTALQHLDLSGCDNLTDAGLAHLAPLTALQHLNLSDCENLTDAGLVHLS 347
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
LI L LDL C R+ + GL +LK L L+ L++ C +TD+ + L L L+ L +
Sbjct: 348 PLIALQHLDLSYCWRLNYAGLAHLKPLTALQYLDLSHCINLTDAGLAHLKPLMRLQYLNL 407
Query: 188 -SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDG 244
C +TD+G+A+L L L LNL C +T A L L+ L +L +L+L+ C+ L+D G
Sbjct: 408 RYCENLTDAGLAHLTPLMALQHLNLSECYHLTDAGLTHLTPLTALQHLDLSHCRSLTDAG 467
Query: 245 CEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC 286
+ + L+ L+L + +TD L L LT L+ L+L C
Sbjct: 468 LAHLTSLTVLQYLDLSYCKNLTDAGLARLTPLTGLQHLDLSRC 510
>gi|168698162|ref|ZP_02730439.1| hypothetical protein GobsU_01482 [Gemmata obscuriglobus UQM 2246]
Length = 295
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 103/268 (38%), Positives = 145/268 (54%), Gaps = 1/268 (0%)
Query: 164 WCNC-ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
W + +TD+ +K L+GLTNL L + + VTD G+ L L+ L L+L VT A L
Sbjct: 7 WRDLQVTDAGLKELAGLTNLTQLILLGTAVTDVGLEELAPLKNLNTLDLGKTKVTDAGLK 66
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
+L+ L L L L ++D G ++ SLK L L ++TD L L NL L
Sbjct: 67 ALAPLTGLTRLALGDTGVTDAGLKELVPFKSLKTLYLFSTKVTDAGLKELGRFKNLTVLG 126
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
L G+ D GL L NL L LS T V +GL+ L+ L NL + L TG++D L+
Sbjct: 127 LGGTGVTDAGLRELGRFKNLTALGLSGTGVTDAGLKELAPLKNLTELGLGGTGVADVGLK 186
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
+LA +L L+L + ++TD GL L L LT LDL ++TD G L K L +L
Sbjct: 187 ELAPFKNLAKLDLYSTKVTDAGLKELGLLKNLTLLDLGRTQVTDDGLRELTGLKALTTLI 246
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
+ G G+TDAG+K + L++LT LNL +
Sbjct: 247 LIGTGVTDAGLKELAGLTNLTRLNLYRT 274
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 100/276 (36%), Positives = 148/276 (53%), Gaps = 1/276 (0%)
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
+VTD+G+ L GL LT L L G VT L+ L+ L +L L+L + +++D G + +
Sbjct: 11 QVTDAGLKELAGLTNLTQLILLGTAVTDVGLEELAPLKNLNTLDLGKTKVTDAGLKALAP 70
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+ L L LG +TD L L +L++L L S + D GL L NL L L T
Sbjct: 71 LTGLTRLALGDTGVTDAGLKELVPFKSLKTLYLFSTKVTDAGLKELGRFKNLTVLGLGGT 130
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
V +GLR L NL ++ LS TG++D L++LA L +L L L + D GL L
Sbjct: 131 GVTDAGLRELGRFKNLTALGLSGTGVTDAGLKELAPLKNLTELGLGGTGVADVGLKELAP 190
Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
L LDL+ ++TD+G L KNL L++ +TD G++ + L +LT L L
Sbjct: 191 FKNLAKLDLYSTKVTDAGLKELGLLKNLTLLDLGRTQVTDDGLRELTGLKALTTLILI-G 249
Query: 431 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 466
+TD L+ ++GLT L LN+ +++T AG + LK
Sbjct: 250 TGVTDAGLKELAGLTNLTRLNLYRTKVTDAGWKELK 285
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 104/276 (37%), Positives = 145/276 (52%), Gaps = 1/276 (0%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
VT A L L+ L +L L L ++D G E+ + + +L L+LG ++TD L L L
Sbjct: 12 VTDAGLKELAGLTNLTQLILLGTAVTDVGLEELAPLKNLNTLDLGKTKVTDAGLKALAPL 71
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
T L L L G+ D GL L +LK L L T+V +GL+ L NL + L TG
Sbjct: 72 TGLTRLALGDTGVTDAGLKELVPFKSLKTLYLFSTKVTDAGLKELGRFKNLTVLGLGGTG 131
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
++D LR+L +L +L L +TD GL L L LT L L G + D G L F
Sbjct: 132 VTDAGLRELGRFKNLTALGLSGTGVTDAGLKELAPLKNLTELGLGGTGVADVGLKELAPF 191
Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 455
KNL L++ +TDAG+K + L +LTLL+L + +TD L ++GL L +L + +
Sbjct: 192 KNLAKLDLYSTKVTDAGLKELGLLKNLTLLDLGR-TQVTDDGLRELTGLKALTTLILIGT 250
Query: 456 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 491
+T AGL+ L L NL L L KVT K L+S
Sbjct: 251 GVTDAGLKELAGLTNLTRLNLYRTKVTDAGWKELKS 286
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 104/279 (37%), Positives = 149/279 (53%), Gaps = 2/279 (0%)
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
+Q++D GL+ L GL+NLT L A+T G++ A L NL LDL + GL L
Sbjct: 10 LQVTDAGLKELAGLTNLTQLIL-LGTAVTDVGLEELAPLKNLNTLDLGKTKVTDAGLKAL 68
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
L L L + +TD+ +K L +LK+L + +KVTD+G+ L + LT+L L
Sbjct: 69 APLTGLTRLALG-DTGVTDAGLKELVPFKSLKTLYLFSTKVTDAGLKELGRFKNLTVLGL 127
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
G VT A L L +L L L+ ++D G ++ + + +L L LG + D L
Sbjct: 128 GGTGVTDAGLRELGRFKNLTALGLSGTGVTDAGLKELAPLKNLTELGLGGTGVADVGLKE 187
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
L NL L+L S + D GL L L NL L+L TQV GLR L+GL L ++ L
Sbjct: 188 LAPFKNLAKLDLYSTKVTDAGLKELGLLKNLTLLDLGRTQVTDDGLRELTGLKALTTLIL 247
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
TG++D L++LAGL++L LNL ++TD G L S
Sbjct: 248 IGTGVTDAGLKELAGLTNLTRLNLYRTKVTDAGWKELKS 286
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 105/303 (34%), Positives = 144/303 (47%), Gaps = 25/303 (8%)
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
R+ +T G+K AGL NL +L I +TD ++
Sbjct: 8 RDLQVTDAGLKELAGLTNLTQL-------------------------ILLGTAVTDVGLE 42
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L+ L NL +L + +KVTD+G+ L L LT L L VT A L L SL L
Sbjct: 43 ELAPLKNLNTLDLGKTKVTDAGLKALAPLTGLTRLALGDTGVTDAGLKELVPFKSLKTLY 102
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
L +++D G ++ + +L VL LG +TD L L NL +L L G+ D GL
Sbjct: 103 LFSTKVTDAGLKELGRFKNLTVLGLGGTGVTDAGLRELGRFKNLTALGLSGTGVTDAGLK 162
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
L L NL L L T V GL+ L+ NL ++L T ++D L++L L +L L+
Sbjct: 163 ELAPLKNLTELGLGGTGVADVGLKELAPFKNLAKLDLYSTKVTDAGLKELGLLKNLTLLD 222
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
L Q+TD GL LT L LT L L G +TD+G L NL L + +TDAG K
Sbjct: 223 LGRTQVTDDGLRELTGLKALTTLILIGTGVTDAGLKELAGLTNLTRLNLYRTKVTDAGWK 282
Query: 415 HIK 417
+K
Sbjct: 283 ELK 285
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 103/181 (56%), Gaps = 1/181 (0%)
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
D QV +GL+ L+GLTNL + L T ++D L +LA L +L +L+L ++TD GL AL
Sbjct: 9 DLQVTDAGLKELAGLTNLTQLILLGTAVTDVGLEELAPLKNLNTLDLGKTKVTDAGLKAL 68
Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
LTGLT L L +TD+G L FK+L++L + +TDAG+K + +LT+L L
Sbjct: 69 APLTGLTRLALGDTGVTDAGLKELVPFKSLKTLYLFSTKVTDAGLKELGRFKNLTVLGLG 128
Query: 429 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
+TD L + L +L +S + +T AGL+ L PLKNL L L V +K
Sbjct: 129 -GTGVTDAGLRELGRFKNLTALGLSGTGVTDAGLKELAPLKNLTELGLGGTGVADVGLKE 187
Query: 489 L 489
L
Sbjct: 188 L 188
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 100/319 (31%), Positives = 150/319 (47%), Gaps = 39/319 (12%)
Query: 26 EAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQS 85
+ +RD + D L + G+ ++L + L G+ VTD GL L NL +
Sbjct: 5 KPWRDLQVTDAGLKELAGL------------TNLTQLILLGTAVTDVGLEELAPLKNLNT 52
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
LD +++D GL+ L L+ LT L+ + +T G+K
Sbjct: 53 LDLGKT-KVTDAGLKALAPLTGLTRLAL-GDTGVTDAGLKE------------------- 91
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
LV K L L + K +TD+ +K L NL L + + VTD+G+ L +
Sbjct: 92 --LVPFKSLKTLYLFSTK----VTDAGLKELGRFKNLTVLGLGGTGVTDAGLRELGRFKN 145
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
LT L L G VT A L L+ L +L L L ++D G ++ + +L L+L ++T
Sbjct: 146 LTALGLSGTGVTDAGLKELAPLKNLTELGLGGTGVADVGLKELAPFKNLAKLDLYSTKVT 205
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
D L L L NL L+L + D+GL LTGL L L L T V +GL+ L+GLTN
Sbjct: 206 DAGLKELGLLKNLTLLDLGRTQVTDDGLRELTGLKALTTLILIGTGVTDAGLKELAGLTN 265
Query: 326 LESINLSFTGISDGSLRKL 344
L +NL T ++D ++L
Sbjct: 266 LTRLNLYRTKVTDAGWKEL 284
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 74/145 (51%), Gaps = 3/145 (2%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L ++ LSG+ VTD+GL L NL L ++D GL+ L NL L +
Sbjct: 144 KNLTALGLSGTGVTDAGLKELAPLKNLTELGLG-GTGVADVGLKELAPFKNLAKLDL-YS 201
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T G+K L NL LDL R GL L GL L +L I +TD+ +K L
Sbjct: 202 TKVTDAGLKELGLLKNLTLLDLGRTQVTDDGLRELTGLKALTTL-ILIGTGVTDAGLKEL 260
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLK 201
+GLTNL L + +KVTD+G LK
Sbjct: 261 AGLTNLTRLNLYRTKVTDAGWKELK 285
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 52/133 (39%), Gaps = 25/133 (18%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC----------- 91
GV D + +A +L + L G+ V D GL L NL LD
Sbjct: 155 GVTDAGLKELAPL-KNLTELGLGGTGVADVGLKELAPFKNLAKLDLYSTKVTDAGLKELG 213
Query: 92 ------------IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
Q++D GL L GL LT+L +T G+K AGL NL +L+L
Sbjct: 214 LLKNLTLLDLGRTQVTDDGLRELTGLKALTTLILI-GTGVTDAGLKELAGLTNLTRLNLY 272
Query: 140 RCTRIHGGLVNLK 152
R G LK
Sbjct: 273 RTKVTDAGWKELK 285
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 429 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
++ +TD L+ ++GLT L L + + +T GL L PLKNL +L L KVT +K
Sbjct: 8 RDLQVTDAGLKELAGLTNLTQLILLGTAVTDVGLEELAPLKNLNTLDLGKTKVTDAGLKA 67
Query: 489 L 489
L
Sbjct: 68 L 68
>gi|406830023|ref|ZP_11089617.1| hypothetical protein SpalD1_00247 [Schlesneria paludicola DSM
18645]
Length = 374
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 115/338 (34%), Positives = 173/338 (51%), Gaps = 24/338 (7%)
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
+N++ D + L T + SL ++ +K+TDSG+ ++ LT+L L +T
Sbjct: 55 VNLQQSERFGDGYVHALKPFTKMTSLNLNSTKITDSGLKGIRNFTSLTMLTLAFTKITDV 114
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
L L L +L L+L C + ++G NEI K LT+L
Sbjct: 115 GLVELKDLKNLTRLDLGGCT---------------AITDVGLNEI--------KELTSLA 151
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
SL+L D GL L L L LEL TQ+ GL+ L LT+L + L T ISD
Sbjct: 152 SLHLSYTQFTDVGLKELADLKCLSNLELRGTQITDDGLKELGTLTSLTRLTLMQTKISDL 211
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
LR+L GL +L+ L+L +ITD GL + L + L LFG ITD G + NL
Sbjct: 212 GLRELKGLRNLQILDLGLTEITDEGLKEIIDLKQIHSLYLFGDEITDEGMQSIGELNNLT 271
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L++ +T+ G+K I L +L L+L + +TD L+ I +T L ++N+ + IT+
Sbjct: 272 ELDLIQTEITNEGLKEISGLKNLKKLHLLNDGKITDVGLKEIGTMTQLTNINLGRTGITN 331
Query: 460 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 497
AGL+ L+ LKNL+SL + +VT+ + LQ ++LP L
Sbjct: 332 AGLKELRNLKNLQSLDVSETEVTSEGVVALQ-KELPKL 368
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 114/350 (32%), Positives = 181/350 (51%), Gaps = 30/350 (8%)
Query: 56 GSSLLSVDLSGSDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
G ++ V+L S+ G +H LK + + SL+ N +I+D GL+ +R ++LT L+
Sbjct: 49 GRPVIYVNLQQSERFGDGYVHALKPFTKMTSLNLN-STKITDSGLKGIRNFTSLTMLTL- 106
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
AF + ++ GLV LK L L L++ C ITD +
Sbjct: 107 -----------AFTKITDV-------------GLVELKDLKNLTRLDLGGCTAITDVGLN 142
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+ LT+L SL +S ++ TD G+ L L+ L+ L L G +T L L L SL L
Sbjct: 143 EIKELTSLASLHLSYTQFTDVGLKELADLKCLSNLELRGTQITDDGLKELGTLTSLTRLT 202
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
L + ++SD G + + +L++L+LG EITDE L + L + SL L I DEG+
Sbjct: 203 LMQTKISDLGLRELKGLRNLQILDLGLTEITDEGLKEIIDLKQIHSLYLFGDEITDEGMQ 262
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSL 353
++ L NL L+L T++ + GL+ +SGL NL+ ++L G I+D L+++ ++ L ++
Sbjct: 263 SIGELNNLTELDLIQTEITNEGLKEISGLKNLKKLHLLNDGKITDVGLKEIGTMTQLTNI 322
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
NL IT+ GL L +L L LD+ +T G L+ K L L+I
Sbjct: 323 NLGRTGITNAGLKELRNLKNLQSLDVSETEVTSEGVVALQ--KELPKLDI 370
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 13/106 (12%)
Query: 396 KNLRSLEICGGGLTDAGVKHIKDLS----SLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
K + +E+ GG K ++D S + +NL Q+ D + + T + SLN
Sbjct: 29 KAIEKIELLGG-------KVMRDESLPGRPVIYVNLQQSERFGDGYVHALKPFTKMTSLN 81
Query: 452 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 497
+++++IT +GL+ ++ +L LTL K+T D+ ++ +DL NL
Sbjct: 82 LNSTKITDSGLKGIRNFTSLTMLTLAFTKIT--DVGLVELKDLKNL 125
>gi|430746590|ref|YP_007205719.1| hypothetical protein Sinac_5908 [Singulisphaera acidiphila DSM
18658]
gi|430018310|gb|AGA30024.1| hypothetical protein Sinac_5908 [Singulisphaera acidiphila DSM
18658]
Length = 506
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 130/429 (30%), Positives = 204/429 (47%), Gaps = 58/429 (13%)
Query: 47 KWM-DVIASQ-GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ------ISDGG 98
KWM D ++++V L G +V D L++ L +++ F IQ ++ G
Sbjct: 112 KWMRDAFGPDLFDTVVNVHLEGDNVDDE---LLENVGKLHGVEW-FTIQGHAAPNLTPAG 167
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+ LR LS L LS R F T HG L L G +L
Sbjct: 168 MAQLRTLSRLKGLSVR-----------GF--------------TDSHGFLAGLMGKTRLS 202
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
L + +TD +M + GLT+L+ LQ+ VTD G A++ L++L+LL++ G +T
Sbjct: 203 HLRLPEA-AVTDDEMAIIGGLTDLEVLQLDGRNVTDRGFAHVANLKELSLLDMPGVRIT- 260
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
L+ + L L++ LS D F++ V + G L L+GLTNL
Sbjct: 261 ----DLAPVTDLVQLDV--LGLSPDRA-TFAR----SVPSPG----GPSSLGPLRGLTNL 305
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
L L + I D L GL L L + ++ +GL L+ +L + + T I+D
Sbjct: 306 TQLTLGATQIEDRELAVAAGLPKLSYLMIGGRRITEAGLARLAESKSLTGLRFTDTSIAD 365
Query: 339 GSLRKLAG-LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
LR L+ L +L L ++ +TD GL L+ T + L + G+R+TD+G +L +
Sbjct: 366 --LRPLSPRLHALWGLYMENSALTDAGLEPLSDATRIGDLTITGSRMTDAGLHHLAPLPS 423
Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
L L + +TDAG+ +K L SL L+L++ LTD ++E ++G L SLN+ S I
Sbjct: 424 LWKLRLGRSAITDAGLGRLKSLKSLETLSLTE-TKLTDSSVETLAGFQSLKSLNLDRSGI 482
Query: 458 TSAGLRHLK 466
+ AG+ LK
Sbjct: 483 SPAGIERLK 491
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 100/316 (31%), Positives = 144/316 (45%), Gaps = 22/316 (6%)
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
+ +T +G+A L+ L +L L++ G + L L L +L L ++DD
Sbjct: 159 AAPNLTPAGMAQLRTLSRLKGLSVRGFTDSHGFLAGLMGKTRLSHLRLPEAAVTDDEMAI 218
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
+ L+VL L +TD H+ L L L++ I D L +T L L L L
Sbjct: 219 IGGLTDLEVLQLDGRNVTDRGFAHVANLKELSLLDMPGVRITD--LAPVTDLVQLDVLGL 276
Query: 308 SDTQV----------GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
S + G S L L GLTNL + L T I D L AGL L L +
Sbjct: 277 SPDRATFARSVPSPGGPSSLGPLRGLTNLTQLTLGATQIEDRELAVAAGLPKLSYLMIGG 336
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR----NFKNLRSLEICGGGLTDAGV 413
R+IT+ GLA L LT G R TD+ A LR L L + LTDAG+
Sbjct: 337 RRITEAGLARLAESKSLT-----GLRFTDTSIADLRPLSPRLHALWGLYMENSALTDAGL 391
Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 473
+ + D + + L ++ +TD L ++ L L L + S IT AGL LK LK+L +
Sbjct: 392 EPLSDATRIGDLTIT-GSRMTDAGLHHLAPLPSLWKLRLGRSAITDAGLGRLKSLKSLET 450
Query: 474 LTLESCKVTANDIKRL 489
L+L K+T + ++ L
Sbjct: 451 LSLTETKLTDSSVETL 466
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 34/190 (17%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLS-NLTSLS--FRRNNAIT 120
+ G +T++GL L + +L L F +D + LR LS L +L + N+A+T
Sbjct: 334 IGGRRITEAGLARLAESKSLTGLRF------TDTSIADLRPLSPRLHALWGLYMENSALT 387
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
G++ L TRI G + + G + +TD+ + L+ L
Sbjct: 388 DAGLEP-----------LSDATRI--GDLTITG------------SRMTDAGLHHLAPLP 422
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+L L++ S +TD+G+ LK L+ L L+L +T + +++L+ SL LNL+R +
Sbjct: 423 SLWKLRLGRSAITDAGLGRLKSLKSLETLSLTETKLTDSSVETLAGFQSLKSLNLDRSGI 482
Query: 241 SDDGCEKFSK 250
S G E+ +
Sbjct: 483 SPAGIERLKQ 492
>gi|290993170|ref|XP_002679206.1| leucine rich repeat protein [Naegleria gruberi]
gi|284092822|gb|EFC46462.1| leucine rich repeat protein [Naegleria gruberi]
Length = 527
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 104/337 (30%), Positives = 163/337 (48%), Gaps = 16/337 (4%)
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
K L+ ++SL C + K +S L L L I S + D G+ Y+ L++L L++
Sbjct: 93 KKLISMKSLTELIIKCDDEGSAKFISELKQLTRLTIDASHIRDEGVRYISELKQLAYLSV 152
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE---- 267
++ + L L L L + ++ +GC+ S++ L L + N I DE
Sbjct: 153 HSNDISDDGVKYLRELKQLTTLIIFSNRVGSEGCKCISELKQLTSLCIDDNHINDEGANN 212
Query: 268 --------CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
C+ LK LT SL +D I DEG L+ L L L++S +G+ G ++
Sbjct: 213 RVGSEGCKCISELKQLT---SLCIDDNHINDEGAKYLSELAQLTYLDISSNGLGNEGTKY 269
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
+S L LE +N+S I D L LS L SL L +I G L+ L LT LD+
Sbjct: 270 ISTLNQLEKLNISQNYIGDEGLEYFGKLSQLTSLELSNNKIGTEGAKYLSELKQLTQLDI 329
Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
+I D GA Y K L +L I + + GVK+I +L L L++S+N + ++ ++
Sbjct: 330 EYNKIGDKGAMYFGELKQLVNLIINNNRIGNDGVKYIGELKQLIYLDISEN-RIGNEGIK 388
Query: 440 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
I L L +N+S +RI + G +++ L L SL L
Sbjct: 389 YIGELKQLTDVNISENRIGNEGAKYIGQLSQLTSLYL 425
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/368 (26%), Positives = 178/368 (48%), Gaps = 35/368 (9%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL-------EGCP----- 215
I D ++ +S L L L + + ++D G+ YL+ L++LT L + EGC
Sbjct: 133 IRDEGVRYISELKQLAYLSVHSNDISDDGVKYLRELKQLTTLIIFSNRVGSEGCKCISEL 192
Query: 216 --VTAACLDS-------------------LSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
+T+ C+D +S L L L ++ ++D+G + S++ L
Sbjct: 193 KQLTSLCIDDNHINDEGANNRVGSEGCKCISELKQLTSLCIDDNHINDEGAKYLSELAQL 252
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
L++ N + +E ++ L LE LN+ IGDEGL L L LELS+ ++G+
Sbjct: 253 TYLDISSNGLGNEGTKYISTLNQLEKLNISQNYIGDEGLEYFGKLSQLTSLELSNNKIGT 312
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
G ++LS L L +++ + I D L L +L ++ +I + G+ + L L
Sbjct: 313 EGAKYLSELKQLTQLDIEYNKIGDKGAMYFGELKQLVNLIINNNRIGNDGVKYIGELKQL 372
Query: 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
+LD+ RI + G Y+ K L + I + + G K+I LS LT L LS N N+
Sbjct: 373 IYLDISENRIGNEGIKYIGELKQLTDVNISENRIGNEGAKYIGQLSQLTSLYLSNN-NIG 431
Query: 435 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL-QSRD 493
++ + IS L L+ L ++N++I + G +++ +K + L + + + IK + + +
Sbjct: 432 NEGAKYISELKELIYLYMNNNKIRNEGAKYISEMKQVTQLDIGNNYIGEEGIKYISEMKQ 491
Query: 494 LPNLVSFR 501
L +L ++
Sbjct: 492 LIHLEKYQ 499
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 101/385 (26%), Positives = 183/385 (47%), Gaps = 12/385 (3%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L + + S + D G+ ++ + L L + ISD G+++LR L LT+L
Sbjct: 118 SELKQLTRLTIDASHIRDEGVRYISELKQLAYLSVH-SNDISDDGVKYLRELKQLTTLII 176
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG---------LMKLESLNIKW 164
+N + ++G K + L L L ++ G N G L +L SL I
Sbjct: 177 F-SNRVGSEGCKCISELKQLTSLCIDDNHINDEGANNRVGSEGCKCISELKQLTSLCID- 234
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N I D K LS L L L IS + + + G Y+ L +L LN+ + L+
Sbjct: 235 DNHINDEGAKYLSELAQLTYLDISSNGLGNEGTKYISTLNQLEKLNISQNYIGDEGLEYF 294
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
L L L L+ ++ +G + S++ L L++ +N+I D+ ++ L L +L ++
Sbjct: 295 GKLSQLTSLELSNNKIGTEGAKYLSELKQLTQLDIEYNKIGDKGAMYFGELKQLVNLIIN 354
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
+ IG++G+ + L L L++S+ ++G+ G++++ L L +N+S I + + +
Sbjct: 355 NNRIGNDGVKYIGELKQLIYLDISENRIGNEGIKYIGELKQLTDVNISENRIGNEGAKYI 414
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
LS L SL L I + G ++ L L +L + +I + GA Y+ K + L+I
Sbjct: 415 GQLSQLTSLYLSNNNIGNEGAKYISELKELIYLYMNNNKIRNEGAKYISEMKQVTQLDIG 474
Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQ 429
+ + G+K+I ++ L L Q
Sbjct: 475 NNYIGEEGIKYISEMKQLIHLEKYQ 499
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 10/150 (6%)
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
+GS + ++ L L L +DA I D G+ ++ L L +L + I+D G YLR K
Sbjct: 111 EGSAKFISELKQLTRLTIDASHIRDEGVRYISELKQLAYLSVHSNDISDDGVKYLRELKQ 170
Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL---------ELISGLTGLV 448
L +L I + G K I +L LT L + N ++ D+ + IS L L
Sbjct: 171 LTTLIIFSNRVGSEGCKCISELKQLTSLCIDDN-HINDEGANNRVGSEGCKCISELKQLT 229
Query: 449 SLNVSNSRITSAGLRHLKPLKNLRSLTLES 478
SL + ++ I G ++L L L L + S
Sbjct: 230 SLCIDDNHINDEGAKYLSELAQLTYLDISS 259
>gi|290973212|ref|XP_002669343.1| predicted protein [Naegleria gruberi]
gi|284082889|gb|EFC36599.1| predicted protein [Naegleria gruberi]
Length = 440
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 152/277 (54%), Gaps = 1/277 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SLNI + N + D K LS + L SL I ++V G YL +++LT LN+
Sbjct: 142 MKQLTSLNIGY-NRVGDEGAKYLSEMKQLTSLNIGYNRVGIEGAKYLSEMEQLTSLNIGY 200
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ + +S + L LN+++ ++S++G + S++ L++LN+ NEI DE + +L
Sbjct: 201 SRIGIEGVKYISEMKQLTSLNISKNEVSNEGAKYLSEMKQLRLLNIYHNEIGDEGVKYLS 260
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
+ L SL++ IG EG+ ++ + L L++S+ ++ G ++LS + L S+N+ +
Sbjct: 261 EMKQLTSLHIGYNRIGLEGVKLISEMEQLTSLDISENEISDEGAKYLSEMEQLTSLNIDY 320
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
+ I ++ ++ + L SL + +I G ++ + L LD+ I+D GA YL
Sbjct: 321 SRIGLEGVKYISEMKQLTSLTIAYNRIGIKGAKLISEMKQLRLLDISNNEISDEGAKYLS 380
Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
K L SL I G+ GVK+I ++ L LL++++N
Sbjct: 381 EMKQLISLYISEIGIGIKGVKYISEMKQLRLLDITRN 417
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 149/290 (51%), Gaps = 1/290 (0%)
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
+ +++LT LN+ + + +S + L LN+ ++ D+G + S++ L LN+
Sbjct: 115 ISAMKQLTSLNIYDNGIGDEEIKYISEMKQLTSLNIGYNRVGDEGAKYLSEMKQLTSLNI 174
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
G+N + E +L + L SLN+ IG EG+ ++ + L L +S +V + G ++
Sbjct: 175 GYNRVGIEGAKYLSEMEQLTSLNIGYSRIGIEGVKYISEMKQLTSLNISKNEVSNEGAKY 234
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
LS + L +N+ I D ++ L+ + L SL++ +I G+ ++ + LT LD+
Sbjct: 235 LSEMKQLRLLNIYHNEIGDEGVKYLSEMKQLTSLHIGYNRIGLEGVKLISEMEQLTSLDI 294
Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
I+D GA YL + L SL I + GVK+I ++ LT L ++ N + K +
Sbjct: 295 SENEISDEGAKYLSEMEQLTSLNIDYSRIGLEGVKYISEMKQLTSLTIAYN-RIGIKGAK 353
Query: 440 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
LIS + L L++SN+ I+ G ++L +K L SL + + +K +
Sbjct: 354 LISEMKQLRLLDISNNEISDEGAKYLSEMKQLISLYISEIGIGIKGVKYI 403
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 27/158 (17%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D+S ++++D G +L + L SL+ ++ +I G++++ + LTSL+
Sbjct: 284 SEMEQLTSLDISENEISDEGAKYLSEMEQLTSLNIDYS-RIGLEGVKYISEMKQLTSLTI 342
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K + + L LD+ N I+D
Sbjct: 343 AYNR-IGIKGAKLISEMKQLRLLDISN-------------------------NEISDEGA 376
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
K LS + L SL IS + G+ Y+ +++L LL++
Sbjct: 377 KYLSEMKQLISLYISEIGIGIKGVKYISEMKQLRLLDI 414
>gi|406830574|ref|ZP_11090168.1| hypothetical protein SpalD1_03019 [Schlesneria paludicola DSM
18645]
Length = 404
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 145/299 (48%), Gaps = 27/299 (9%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
TD+D+ L L+SL +S ++++ GIA L L+ LT+L+L PV A L L
Sbjct: 63 FTDADVTLLKTFPELESLDLSGTQISGKGIAELSVLRSLTVLHLANLPVKNAQFKKLIEL 122
Query: 228 GSLFYLNLNRCQLSDD------------------------GCEKFSKIGSLKVLNLGFNE 263
SL L++ Q+SD G SK G L +L+L
Sbjct: 123 DSLTTLDVADTQVSDAALQGSIAHPNLTTLVLSGNRITNAGLNDLSKFGQLAILDLTQTR 182
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
++DE + LK L NL L L I D GL + GL +LK L+L+ TQ+ +GL+HL GL
Sbjct: 183 VSDEGMTALKRLENLTELRLSGNVITDTGLEAIGGLSHLKILDLTATQITDAGLKHLRGL 242
Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
NL + L + D + L + +L +L+ A QITD L+AL + LT LDL
Sbjct: 243 NNLNELKLGRNQVKDNGVNALVEIPTLIALDFYATQITDECLSALGQIANLTTLDLGKNP 302
Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
I+D G L +NL+ + + +T +G+K +D L+ N TD+ +E S
Sbjct: 303 ISDFGLRNLTRLRNLKEIGLVEAPVTASGLKRFQDAIGTPLI---ITWNGTDQDIEAAS 358
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 150/309 (48%), Gaps = 28/309 (9%)
Query: 185 LQISC---SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
+QI C + TD+ + LK +L L+L G ++ + LS L SL L+L +
Sbjct: 53 VQIDCRDAQEFTDADVTLLKTFPELESLDLSGTQISGKGIAELSVLRSLTVLHLANLPVK 112
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
+ +K ++ SL L++ +++D L +G + N
Sbjct: 113 NAQFKKLIELDSLTTLDVADTQVSDAAL---------------------QGSI---AHPN 148
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
L L LS ++ ++GL LS L ++L+ T +SD + L L +L L L IT
Sbjct: 149 LTTLVLSGNRITNAGLNDLSKFGQLAILDLTQTRVSDEGMTALKRLENLTELRLSGNVIT 208
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421
DTGL A+ L+ L LDL +ITD+G +LR NL L++ + D GV + ++ +
Sbjct: 209 DTGLEAIGGLSHLKILDLTATQITDAGLKHLRGLNNLNELKLGRNQVKDNGVNALVEIPT 268
Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
L L+ +TD+ L + + L +L++ + I+ GLR+L L+NL+ + L V
Sbjct: 269 LIALDFYA-TQITDECLSALGQIANLTTLDLGKNPISDFGLRNLTRLRNLKEIGLVEAPV 327
Query: 482 TANDIKRLQ 490
TA+ +KR Q
Sbjct: 328 TASGLKRFQ 336
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 136/257 (52%), Gaps = 5/257 (1%)
Query: 142 TRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
T+I G G+ L L L L++ + ++ K L L +L +L ++ ++V+D+ +
Sbjct: 85 TQISGKGIAELSVLRSLTVLHLANL-PVKNAQFKKLIELDSLTTLDVADTQVSDAALQGS 143
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
LT L L G +T A L+ LS G L L+L + ++SD+G ++ +L L L
Sbjct: 144 IAHPNLTTLVLSGNRITNAGLNDLSKFGQLAILDLTQTRVSDEGMTALKRLENLTELRLS 203
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
N ITD L + GL++L+ L+L + I D GL +L GL NL L+L QV +G+ L
Sbjct: 204 GNVITDTGLEAIGGLSHLKILDLTATQITDAGLKHLRGLNNLNELKLGRNQVKDNGVNAL 263
Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
+ L +++ T I+D L L +++L +L+L I+D GL LT L L + L
Sbjct: 264 VEIPTLIALDFYATQITDECLSALGQIANLTTLDLGKNPISDFGLRNLTRLRNLKEIGLV 323
Query: 381 GARITDSGAAYLRNFKN 397
A +T SG L+ F++
Sbjct: 324 EAPVTASG---LKRFQD 337
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 116/217 (53%), Gaps = 3/217 (1%)
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
D+ D + L L+ L+LS TQ+ G+ LS L +L ++L+ + + +K
Sbjct: 59 DAQEFTDADVTLLKTFPELESLDLSGTQISGKGIAELSVLRSLTVLHLANLPVKNAQFKK 118
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
L L SL +L++ Q++D L + LT L L G RIT++G L F L L++
Sbjct: 119 LIELDSLTTLDVADTQVSDAALQGSIAHPNLTTLVLSGNRITNAGLNDLSKFGQLAILDL 178
Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
++D G+ +K L +LT L LS N +TD LE I GL+ L L+++ ++IT AGL+
Sbjct: 179 TQTRVSDEGMTALKRLENLTELRLSGNV-ITDTGLEAIGGLSHLKILDLTATQITDAGLK 237
Query: 464 HLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 500
HL+ L NL L L +V N + L ++P L++
Sbjct: 238 HLRGLNNLNELKLGRNQVKDNGVNALV--EIPTLIAL 272
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 151/345 (43%), Gaps = 28/345 (8%)
Query: 30 DCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVD-LSGSDVTDSGLIHLKDCSNLQSLDF 88
D QD + + + K + S ++ +D + TD+ + LK L+SLD
Sbjct: 23 DDVTQDTAIQRIEALGGKVVRNQERPSSPVVQIDCRDAQEFTDADVTLLKTFPELESLDL 82
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148
+ QIS G+ L L +LT L AQ K L
Sbjct: 83 S-GTQISGKGIAELSVLRSLTVLHLANLPVKNAQFKK----------------------L 119
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
+ L L L+ + + ++D+ ++ NL +L +S +++T++G+ L +L +
Sbjct: 120 IELDSLTTLDVADTQ----VSDAALQGSIAHPNLTTLVLSGNRITNAGLNDLSKFGQLAI 175
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L+L V+ + +L L +L L L+ ++D G E + LK+L+L +ITD
Sbjct: 176 LDLTQTRVSDEGMTALKRLENLTELRLSGNVITDTGLEAIGGLSHLKILDLTATQITDAG 235
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
L HL+GL NL L L + D G+ L + L L+ TQ+ L L + NL +
Sbjct: 236 LKHLRGLNNLNELKLGRNQVKDNGVNALVEIPTLIALDFYATQITDECLSALGQIANLTT 295
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
++L ISD LR L L +LK + L +T +GL G
Sbjct: 296 LDLGKNPISDFGLRNLTRLRNLKEIGLVEAPVTASGLKRFQDAIG 340
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 72/146 (49%), Gaps = 3/146 (2%)
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
DA++ TD + L + L LDL G +I+ G A L ++L L + + +A K
Sbjct: 59 DAQEFTDADVTLLKTFPELESLDLSGTQISGKGIAELSVLRSLTVLHLANLPVKNAQFKK 118
Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
+ +L SLT L+++ + ++D L+ L +L +S +RIT+AGL L L L
Sbjct: 119 LIELDSLTTLDVA-DTQVSDAALQGSIAHPNLTTLVLSGNRITNAGLNDLSKFGQLAILD 177
Query: 476 LESCKVTANDIKRLQSRDLPNLVSFR 501
L +V+ + L+ L NL R
Sbjct: 178 LTQTRVSDEGMTALKR--LENLTELR 201
>gi|32477504|ref|NP_870498.1| adenylate cyclase regulatory protein [Rhodopirellula baltica SH 1]
gi|32448058|emb|CAD77575.1| conserved hypothetical protein-putative adenylate cyclase
regulatory protein [Rhodopirellula baltica SH 1]
Length = 513
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 104/322 (32%), Positives = 156/322 (48%), Gaps = 33/322 (10%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ--ISDGGL 99
PG++D M+ + S ++L + L+ + +TD LK + SLD F + ++D GL
Sbjct: 176 PGIDDAGMENLKSL-ANLKRLTLADTAITDQ---TLKTVGEMTSLDALFLRRTGVTDEGL 231
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
E L GLS L ++ R N I GM + A + L+ + LE+ GLV L L L+S
Sbjct: 232 ELLTGLSKLRAIDLRNTN-IGDAGMDSLAKIKTLIDVKLEKSKVTDEGLVKLAPL-PLKS 289
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
+N +C I MK L L++LQ SK+ D +A LKGL KL L + GC VT
Sbjct: 290 INFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLSKLKRLRIRGCDVTGE 349
Query: 220 ------------------------CLDSLSALGSLFYLNLNRCQL-SDDGCEKFSKIGSL 254
L +S L ++ +++++ C+L S +G + K+ L
Sbjct: 350 GIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISECRLASPEGIAQLGKLTGL 409
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
L L + DE L L NLE LNL S + DE L L + LK L ++ TQ+G
Sbjct: 410 TYLGLWETKTNDETLAGFGDLVNLEELNLKSTAVTDESLPVLMKMTKLKTLNVAGTQLGD 469
Query: 315 SGLRHLSGLTNLESINLSFTGI 336
L+ L NL+S+N++ T I
Sbjct: 470 DSFLELAKLPNLKSMNVANTSI 491
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 109/396 (27%), Positives = 182/396 (45%), Gaps = 39/396 (9%)
Query: 69 VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLE----HLRGLSNLTSLSFRRNNAITAQG 123
+T++G I K D N+ F I GG+E HLRG+ N T +F I G
Sbjct: 128 LTEAGYILTKNDDGNV----VEFSIANQKGGIEESLQHLRGIPNTTEATFN-GPGIDDAG 182
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
M+ L NL +L L ITD +K + +T+L
Sbjct: 183 MENLKSLANLKRLTLADT-------------------------AITDQTLKTVGEMTSLD 217
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+L + + VTD G+ L GL KL ++L + A +DSL+ + +L + L + +++D+
Sbjct: 218 ALFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKVTDE 277
Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
G K + + LK +N + I + L LE+L D I DE + L GL L
Sbjct: 278 GLVKLAPL-PLKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLSKL 336
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQIT 361
K L + V G++H++G L L + + D L+ ++ L ++ +++ + R +
Sbjct: 337 KRLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISECRLAS 396
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421
G+A L LTGLT+L L+ + D A + NL L + +TD + + ++
Sbjct: 397 PEGIAQLGKLTGLTYLGLWETKTNDETLAGFGDLVNLEELNLKSTAVTDESLPVLMKMTK 456
Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
L LN++ L D + ++ L L S+NV+N+ I
Sbjct: 457 LKTLNVA-GTQLGDDSFLELAKLPNLKSMNVANTSI 491
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 90/317 (28%), Positives = 142/317 (44%), Gaps = 41/317 (12%)
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
V + IA KG + +L +L G P T N + D G E +
Sbjct: 143 VVEFSIANQKGGIEESLQHLRGIPNTTEA-------------TFNGPGIDDAGMENLKSL 189
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
+LK L L ITD+ L + +T+L++L L G+ DEGL LTGL L+ ++L +T
Sbjct: 190 ANLKRLTLADTAITDQTLKTVGEMTSLDALFLRRTGVTDEGLELLTGLSKLRAIDLRNTN 249
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL---------------- 355
+G +G+ L+ + L + L + ++D L KLA L LKS+N
Sbjct: 250 IGDAGMDSLAKIKTLIDVKLEKSKVTDEGLVKLAPL-PLKSINFNYCTTINGPTMKMLGQ 308
Query: 356 ---------DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
D +I D +A L L+ L L + G +T G ++ K L E+
Sbjct: 309 TPTLENLQGDYSKINDESMAELKGLSKLKRLRIRGCDVTGEGIQHIAGNKALARFELRDS 368
Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNL-TDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
+ D G+K I L ++T +++S+ C L + + + + LTGL L + ++ L
Sbjct: 369 SVDDDGLKVISQLPAVTHVDISE-CRLASPEGIAQLGKLTGLTYLGLWETKTNDETLAGF 427
Query: 466 KPLKNLRSLTLESCKVT 482
L NL L L+S VT
Sbjct: 428 GDLVNLEELNLKSTAVT 444
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 118/244 (48%), Gaps = 25/244 (10%)
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
+E L HL+G+ N + GI D G+ NL L NLK L L+DT + L+ + +T+
Sbjct: 156 EESLQHLRGIPNTTEATFNGPGIDDAGMENLKSLANLKRLTLADTAITDQTLKTVGEMTS 215
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L+++ L TG++D L L GLS L++++L I D G+ +L + L + L +++T
Sbjct: 216 LDALFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKVT 275
Query: 386 DSGAAYLR-------NFK-----NLRSLEICGGGLT------------DAGVKHIKDLSS 421
D G L NF N ++++ G T D + +K LS
Sbjct: 276 DEGLVKLAPLPLKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLSK 335
Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
L L + + C++T + ++ I+G L + +S + GL+ + L + + + C++
Sbjct: 336 LKRLRI-RGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISECRL 394
Query: 482 TAND 485
+ +
Sbjct: 395 ASPE 398
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 68/128 (53%), Gaps = 1/128 (0%)
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421
+ L L + T G I D+G L++ NL+ L + +TD +K + +++S
Sbjct: 156 EESLQHLRGIPNTTEATFNGPGIDDAGMENLKSLANLKRLTLADTAITDQTLKTVGEMTS 215
Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
L L L + +TD+ LEL++GL+ L ++++ N+ I AG+ L +K L + LE KV
Sbjct: 216 LDALFL-RRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKV 274
Query: 482 TANDIKRL 489
T + +L
Sbjct: 275 TDEGLVKL 282
>gi|217074836|gb|ACJ85778.1| unknown [Medicago truncatula]
Length = 81
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 65/79 (82%), Positives = 72/79 (91%)
Query: 425 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 484
LNLSQN NLTDKT+ELI+GLT LVSLN+SN+RITSAGL+HLK LKNLRSLTLESCKVTAN
Sbjct: 3 LNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITSAGLQHLKTLKNLRSLTLESCKVTAN 62
Query: 485 DIKRLQSRDLPNLVSFRPE 503
DIK+ + LPNLVSFRPE
Sbjct: 63 DIKKFKLIHLPNLVSFRPE 81
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 39/59 (66%)
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
LN+ + +TD ++ ++GLT L SL +S +++T +G+ +LK L+ L L LE C VTA
Sbjct: 3 LNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITSAGLQHLKTLKNLRSLTLESCKVTA 61
Score = 38.9 bits (89), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
+TD + + LT L L+L RIT +G +L+ KNLRSL + +T +K K
Sbjct: 11 LTDKTVELIAGLTALVSLNLSNTRITSAGLQHLKTLKNLRSLTLESCKVTANDIKKFK 68
Score = 38.5 bits (88), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 36 LCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQI 94
L L Q + DK +++IA ++L+S++LS + +T +GL HLK NL+SL C +
Sbjct: 3 LNLSQNSNLTDKTVELIAGL-TALVSLNLSNTRITSAGLQHLKTLKNLRSLTLESCKVTA 61
Query: 95 SDGGLEHLRGLSNLTSLSFR 114
+D L L NL +SFR
Sbjct: 62 NDIKKFKLIHLPNL--VSFR 79
>gi|149174540|ref|ZP_01853166.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148846650|gb|EDL60987.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 309
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 139/250 (55%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+ D+ + L L+ L+ L +S SKVTD G+ +LK L+ L + L G PV+ + L L
Sbjct: 50 LVDAGLVYLGRLSKLRKLDLSGSKVTDDGMVHLKSLKSLREITLHGIPVSDSGLAEFKKL 109
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
+L LNL+R +++D G + + SLK L L EIT + L HL GL +LE+L L
Sbjct: 110 SNLEILNLSRTKVTDAGLKHLKSLDSLKELFLTGLEITADGLAHLSGLKSLETLGLSETQ 169
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
I D+ L +L L L+ L L DTQ+ GL+ + GLT L+ + L T I+D L+ L +
Sbjct: 170 ITDDALAHLKTLKKLRVLLLRDTQITDEGLKQIKGLTRLQRLWLRNTQITDDGLKYLIKM 229
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
++ L L+ QIT+ G++ + L + ++L ++D L+ KNL +L I G
Sbjct: 230 KDMEWLELNDTQITNAGISEIKVLENIVDMNLRNTDVSDKCITSLKKMKNLGTLYIDGTE 289
Query: 408 LTDAGVKHIK 417
+T+ G+ ++
Sbjct: 290 ITEEGIAKLE 299
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 99/287 (34%), Positives = 148/287 (51%), Gaps = 25/287 (8%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
N+ + S SK+ D+G+ YL L KL L+L G VT + L +L SL + L+ +
Sbjct: 39 NISQVSFSGSKLVDAGLVYLGRLSKLRKLDLSGSKVTDDGMVHLKSLKSLREITLHGIPV 98
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
SD G +F K L+NLE LNL + D GL +L L
Sbjct: 99 SDSGLAEFKK------------------------LSNLEILNLSRTKVTDAGLKHLKSLD 134
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
+LK L L+ ++ + GL HLSGL +LE++ LS T I+D +L L L L+ L L QI
Sbjct: 135 SLKELFLTGLEITADGLAHLSGLKSLETLGLSETQITDDALAHLKTLKKLRVLLLRDTQI 194
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
TD GL + LT L L L +ITD G YL K++ LE+ +T+AG+ IK L
Sbjct: 195 TDEGLKQIKGLTRLQRLWLRNTQITDDGLKYLIKMKDMEWLELNDTQITNAGISEIKVLE 254
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 467
++ +NL +N +++DK + + + L +L + + IT G+ L+
Sbjct: 255 NIVDMNL-RNTDVSDKCITSLKKMKNLGTLYIDGTEITEEGIAKLEK 300
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 146/268 (54%), Gaps = 2/268 (0%)
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
G++ ++ + +L D G ++ L+ L+L +++TD+ +VHLK L +L + L
Sbjct: 38 GNISQVSFSGSKLVDAGLVYLGRLSKLRKLDLSGSKVTDDGMVHLKSLKSLREITLHGIP 97
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
+ D GL L NL+ L LS T+V +GL+HL L +L+ + L+ I+ L L+GL
Sbjct: 98 VSDSGLAEFKKLSNLEILNLSRTKVTDAGLKHLKSLDSLKELFLTGLEITADGLAHLSGL 157
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
SL++L L QITD LA L +L L L L +ITD G ++ L+ L +
Sbjct: 158 KSLETLGLSETQITDDALAHLKTLKKLRVLLLRDTQITDEGLKQIKGLTRLQRLWLRNTQ 217
Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 467
+TD G+K++ + + L L+ + +T+ + I L +V +N+ N+ ++ + LK
Sbjct: 218 ITDDGLKYLIKMKDMEWLELN-DTQITNAGISEIKVLENIVDMNLRNTDVSDKCITSLKK 276
Query: 468 LKNLRSLTLESCKVTANDIKRLQSRDLP 495
+KNL +L ++ ++T I +L+ + LP
Sbjct: 277 MKNLGTLYIDGTEITEEGIAKLE-KSLP 303
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 127/240 (52%), Gaps = 3/240 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L +DLSGS VTD G++HLK +L+ + + I +SD GL + LSNL L+ R
Sbjct: 62 SKLRKLDLSGSKVTDDGMVHLKSLKSLREITLH-GIPVSDSGLAEFKKLSNLEILNLSRT 120
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T G+K L +L +L L GL +L GL LE+L + ITD + L
Sbjct: 121 K-VTDAGLKHLKSLDSLKELFLTGLEITADGLAHLSGLKSLETLGLSETQ-ITDDALAHL 178
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
L L+ L + +++TD G+ +KGL +L L L +T L L + + +L LN
Sbjct: 179 KTLKKLRVLLLRDTQITDEGLKQIKGLTRLQRLWLRNTQITDDGLKYLIKMKDMEWLELN 238
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q+++ G + + ++ +NL +++D+C+ LK + NL +L +D I +EG+ L
Sbjct: 239 DTQITNAGISEIKVLENIVDMNLRNTDVSDKCITSLKKMKNLGTLYIDGTEITEEGIAKL 298
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 136/260 (52%), Gaps = 3/260 (1%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
V SGS + D+GL++L S L+ LD + +++D G+ HL+ L +L ++ ++
Sbjct: 43 VSFSGSKLVDAGLVYLGRLSKLRKLDLSGS-KVTDDGMVHLKSLKSLREITL-HGIPVSD 100
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
G+ F L NL L+L R GL +LK L L+ L + D + LSGL +
Sbjct: 101 SGLAEFKKLSNLEILNLSRTKVTDAGLKHLKSLDSLKELFLTGLEITADG-LAHLSGLKS 159
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L++L +S +++TD +A+LK L+KL +L L +T L + L L L L Q++
Sbjct: 160 LETLGLSETQITDDALAHLKTLKKLRVLLLRDTQITDEGLKQIKGLTRLQRLWLRNTQIT 219
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
DDG + K+ ++ L L +IT+ + +K L N+ +NL + + D+ + +L + N
Sbjct: 220 DDGLKYLIKMKDMEWLELNDTQITNAGISEIKVLENIVDMNLRNTDVSDKCITSLKKMKN 279
Query: 302 LKCLELSDTQVGSSGLRHLS 321
L L + T++ G+ L
Sbjct: 280 LGTLYIDGTEITEEGIAKLE 299
>gi|46447626|ref|YP_008991.1| hypothetical protein pc1992 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401267|emb|CAF24716.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 537
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 163/288 (56%), Gaps = 11/288 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLT--SLSFRRNNAITAQGMKA 126
+TD+ L+ LKDC NL+ L+ C ++D GL HL L+ L LSF RN +T G+
Sbjct: 252 LTDAYLLALKDCKNLKMLNLKSCKNLTDAGLAHLTPLTALRRLDLSFCRN--LTDAGLAN 309
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
LI L LDL C + GL +L L L L++ C +TD+ + L+ L +L+ L
Sbjct: 310 LTPLIALQHLDLSWCKNLTDAGLAHLTPLGALHYLDLSICGKLTDAGLAHLTPLVDLQHL 369
Query: 186 QI-SCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSD 242
+ C K++D+G+A+L+ L L L+L C +T A L L+ L +L +L+LNRC+ L++
Sbjct: 370 NLRYCQKLSDAGLAHLRSLVTLQHLDLSYCQNLTDAGLAHLARLTALQHLSLNRCKNLTE 429
Query: 243 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC 300
G + +L+ L+L + ++T++ L K LT L+ LNL+ C + D GL +L+ L
Sbjct: 430 AGLVHLRPLVTLQHLDLSYCQKLTNDGLGLFKSLTALQYLNLNHCQKLTDAGLAHLSPLG 489
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGL 347
L+ L+L T + +GL HL L L+ + LS T ++D L L+ L
Sbjct: 490 ALQHLDLWCTNITDAGLAHLKPLGALQYLGLSRCTNLTDAGLAHLSPL 537
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 171/298 (57%), Gaps = 9/298 (3%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E LN +TD+ + L NLK L + SC +TD+G+A+L L L L+L C
Sbjct: 240 EIEELNFSDNVYLTDAYLLALKDCKNLKMLNLKSCKNLTDAGLAHLTPLTALRRLDLSFC 299
Query: 215 P-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVH 271
+T A L +L+ L +L +L+L+ C+ L+D G + +G+L L+L ++TD L H
Sbjct: 300 RNLTDAGLANLTPLIALQHLDLSWCKNLTDAGLAHLTPLGALHYLDLSICGKLTDAGLAH 359
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESI 329
L L +L+ LNL C + D GL +L L L+ L+LS Q + +GL HL+ LT L+ +
Sbjct: 360 LTPLVDLQHLNLRYCQKLSDAGLAHLRSLVTLQHLDLSYCQNLTDAGLAHLARLTALQHL 419
Query: 330 NLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITD 386
+L+ +++ L L L +L+ L+L +++T+ GL SLT L +L+L ++TD
Sbjct: 420 SLNRCKNLTEAGLVHLRPLVTLQHLDLSYCQKLTNDGLGLFKSLTALQYLNLNHCQKLTD 479
Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 444
+G A+L L+ L++ +TDAG+ H+K L +L L LS+ NLTD L +S L
Sbjct: 480 AGLAHLSPLGALQHLDLWCTNITDAGLAHLKPLGALQYLGLSRCTNLTDAGLAHLSPL 537
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 96/265 (36%), Positives = 144/265 (54%), Gaps = 6/265 (2%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
S ++TD+GL HL + L+ LD +FC ++D GL +L L L L +T G+
Sbjct: 273 SCKNLTDAGLAHLTPLTALRRLDLSFCRNLTDAGLANLTPLIALQHLDLSWCKNLTDAGL 332
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
L L LDL C ++ GL +L L+ L+ LN+++C ++D+ + L L L+
Sbjct: 333 AHLTPLGALHYLDLSICGKLTDAGLAHLTPLVDLQHLNLRYCQKLSDAGLAHLRSLVTLQ 392
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-L 240
L +S C +TD+G+A+L L L L+L C +T A L L L +L +L+L+ CQ L
Sbjct: 393 HLDLSYCQNLTDAGLAHLARLTALQHLSLNRCKNLTEAGLVHLRPLVTLQHLDLSYCQKL 452
Query: 241 SDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
++DG F + +L+ LNL ++TD L HL L L+ L+L I D GL +L L
Sbjct: 453 TNDGLGLFKSLTALQYLNLNHCQKLTDAGLAHLSPLGALQHLDLWCTNITDAGLAHLKPL 512
Query: 300 CNLKCLELSD-TQVGSSGLRHLSGL 323
L+ L LS T + +GL HLS L
Sbjct: 513 GALQYLGLSRCTNLTDAGLAHLSPL 537
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 101/272 (37%), Positives = 149/272 (54%), Gaps = 8/272 (2%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLK 273
+T A L +L +L LNL C+ L+D G + + +L+ L+L F +TD L +L
Sbjct: 252 LTDAYLLALKDCKNLKMLNLKSCKNLTDAGLAHLTPLTALRRLDLSFCRNLTDAGLANLT 311
Query: 274 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINL 331
L L+ L+L C + D GL +LT L L L+LS ++ +GL HL+ L +L+ +NL
Sbjct: 312 PLIALQHLDLSWCKNLTDAGLAHLTPLGALHYLDLSICGKLTDAGLAHLTPLVDLQHLNL 371
Query: 332 SF-TGISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDLFGAR-ITDSG 388
+ +SD L L L +L+ L+L Q +TD GLA L LT L HL L + +T++G
Sbjct: 372 RYCQKLSDAGLAHLRSLVTLQHLDLSYCQNLTDAGLAHLARLTALQHLSLNRCKNLTEAG 431
Query: 389 AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
+LR L+ L++ LT+ G+ K L++L LNL+ LTD L +S L L
Sbjct: 432 LVHLRPLVTLQHLDLSYCQKLTNDGLGLFKSLTALQYLNLNHCQKLTDAGLAHLSPLGAL 491
Query: 448 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 479
L++ + IT AGL HLKPL L+ L L C
Sbjct: 492 QHLDLWCTNITDAGLAHLKPLGALQYLGLSRC 523
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 138/248 (55%), Gaps = 10/248 (4%)
Query: 253 SLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT 310
+LK+LNL +TD L HL LT L L+L C + D GL NLT L L+ L+LS
Sbjct: 265 NLKMLNLKSCKNLTDAGLAHLTPLTALRRLDLSFCRNLTDAGLANLTPLIALQHLDLSWC 324
Query: 311 Q-VGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAA 367
+ + +GL HL+ L L ++LS G ++D L L L L+ LNL ++++D GLA
Sbjct: 325 KNLTDAGLAHLTPLGALHYLDLSICGKLTDAGLAHLTPLVDLQHLNLRYCQKLSDAGLAH 384
Query: 368 LTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTL 424
L SL L HLDL + +TD+G A+L L+ L + C LT+AG+ H++ L +L
Sbjct: 385 LRSLVTLQHLDLSYCQNLTDAGLAHLARLTALQHLSLNRCKN-LTEAGLVHLRPLVTLQH 443
Query: 425 LNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTA 483
L+LS LT+ L L LT L LN+++ ++T AGL HL PL L+ L L +T
Sbjct: 444 LDLSYCQKLTNDGLGLFKSLTALQYLNLNHCQKLTDAGLAHLSPLGALQHLDLWCTNITD 503
Query: 484 NDIKRLQS 491
+ L+
Sbjct: 504 AGLAHLKP 511
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 126/244 (51%), Gaps = 6/244 (2%)
Query: 13 ELVYSRCLTEVSLEAFRD-CALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLS-GSDVT 70
+L + R LT+ L ALQ L L + D + + G+ L +DLS +T
Sbjct: 295 DLSFCRNLTDAGLANLTPLIALQHLDLSWCKNLTDAGLAHLTPLGA-LHYLDLSICGKLT 353
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D+GL HL +LQ L+ +C ++SD GL HLR L L L +T G+ A L
Sbjct: 354 DAGLAHLTPLVDLQHLNLRYCQKLSDAGLAHLRSLVTLQHLDLSYCQNLTDAGLAHLARL 413
Query: 131 INLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
L L L RC + GLV+L+ L+ L+ L++ +C +T+ + LT L+ L ++
Sbjct: 414 TALQHLSLNRCKNLTEAGLVHLRPLVTLQHLDLSYCQKLTNDGLGLFKSLTALQYLNLNH 473
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEK 247
C K+TD+G+A+L L L L+L +T A L L LG+L YL L+RC L+D G
Sbjct: 474 CQKLTDAGLAHLSPLGALQHLDLWCTNITDAGLAHLKPLGALQYLGLSRCTNLTDAGLAH 533
Query: 248 FSKI 251
S +
Sbjct: 534 LSPL 537
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 132/248 (53%), Gaps = 31/248 (12%)
Query: 246 EKFSKIGSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
EK K S ++ L F++ +TD L+ LK NL+ LNL SC NLT
Sbjct: 231 EKILKHFSNEIEELNFSDNVYLTDAYLLALKDCKNLKMLNLKSCK-------NLT----- 278
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQI 360
+GL HL+ LT L ++LSF ++D L L L +L+ L+L + +
Sbjct: 279 -----------DAGLAHLTPLTALRRLDLSFCRNLTDAGLANLTPLIALQHLDLSWCKNL 327
Query: 361 TDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKD 418
TD GLA LT L L +LDL ++TD+G A+L +L+ L + L+DAG+ H++
Sbjct: 328 TDAGLAHLTPLGALHYLDLSICGKLTDAGLAHLTPLVDLQHLNLRYCQKLSDAGLAHLRS 387
Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLE 477
L +L L+LS NLTD L ++ LT L L+++ + +T AGL HL+PL L+ L L
Sbjct: 388 LVTLQHLDLSYCQNLTDAGLAHLARLTALQHLSLNRCKNLTEAGLVHLRPLVTLQHLDLS 447
Query: 478 SCKVTAND 485
C+ ND
Sbjct: 448 YCQKLTND 455
>gi|440717669|ref|ZP_20898151.1| hypothetical protein RBSWK_05211 [Rhodopirellula baltica SWK14]
gi|436437289|gb|ELP30945.1| hypothetical protein RBSWK_05211 [Rhodopirellula baltica SWK14]
Length = 442
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 104/322 (32%), Positives = 157/322 (48%), Gaps = 33/322 (10%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ--ISDGGL 99
PG++D M+ + S ++L + L+ + +TD LK + SLD F + ++D GL
Sbjct: 105 PGIDDAGMENLKSL-ANLKRLTLADTAITDQ---TLKTVGEMTSLDALFLRRTGVTDEGL 160
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
E L GLS L ++ R N I GM + A + L+ + LE+ GLV L L L+S
Sbjct: 161 ELLTGLSKLRAIDLRNTN-IGDAGMDSLAKIKTLIDVKLEKSKVTDEGLVKLAPL-PLKS 218
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
+N +C I MK L L++LQ SK+ D+ +A LKGL KL L + GC VT
Sbjct: 219 INFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDASMAELKGLSKLKRLRIRGCDVTGE 278
Query: 220 ------------------------CLDSLSALGSLFYLNLNRCQL-SDDGCEKFSKIGSL 254
L +S L ++ +++++ C+L S +G + K+ L
Sbjct: 279 GIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISECRLASPEGIAQLGKLIGL 338
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
L L + DE L L NLE LNL S + DE L L + LK L ++ TQ+G
Sbjct: 339 TYLGLWETKTNDETLAGFGDLVNLEELNLKSTAVTDESLPVLMKMTKLKTLNVAGTQLGD 398
Query: 315 SGLRHLSGLTNLESINLSFTGI 336
L+ L NL+S+N++ T I
Sbjct: 399 DSFLELAKLPNLKSMNVANTSI 420
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 105/420 (25%), Positives = 183/420 (43%), Gaps = 63/420 (15%)
Query: 69 VTDSGLIHLKDCS-NLQSLDFNFCIQISDGGLE----HLRGLSNLTSLSFRRNNAITAQG 123
+T++G I KD N+ F I GG+E HL G+ N T +F I G
Sbjct: 57 LTEAGYILTKDDDGNV----VEFSIANQKGGIEESLQHLSGIPNTTEATFN-GPGIDDAG 111
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
M+ L NL +L L ITD +K + +T+L
Sbjct: 112 MENLKSLANLKRLTLADT-------------------------AITDQTLKTVGEMTSLD 146
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+L + + VTD G+ L GL KL ++L + A +DSL+ + +L + L + +++D+
Sbjct: 147 ALFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKVTDE 206
Query: 244 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
G K + + LK +N + I + L LE+L D I D + L GL L
Sbjct: 207 GLVKLAPL-PLKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDASMAELKGLSKL 265
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQIT 361
K L + V G++H++G L L + + D L+ ++ L ++ +++ + R +
Sbjct: 266 KRLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISECRLAS 325
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421
G+A L L GLT+L L+ + D A + NL L +
Sbjct: 326 PEGIAQLGKLIGLTYLGLWETKTNDETLAGFGDLVNLEELNL------------------ 367
Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
++ +TD++L ++ +T L +LNV+ +++ L L NL+S+ + + +
Sbjct: 368 -------KSTAVTDESLPVLMKMTKLKTLNVAGTQLGDDSFLELAKLPNLKSMNVANTSI 420
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 118/244 (48%), Gaps = 25/244 (10%)
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
+E L HL G+ N + GI D G+ NL L NLK L L+DT + L+ + +T+
Sbjct: 85 EESLQHLSGIPNTTEATFNGPGIDDAGMENLKSLANLKRLTLADTAITDQTLKTVGEMTS 144
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L+++ L TG++D L L GLS L++++L I D G+ +L + L + L +++T
Sbjct: 145 LDALFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKVT 204
Query: 386 DSGAAYLR-------NFK-----NLRSLEICGGGLT------------DAGVKHIKDLSS 421
D G L NF N ++++ G T DA + +K LS
Sbjct: 205 DEGLVKLAPLPLKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDASMAELKGLSK 264
Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
L L + + C++T + ++ I+G L + +S + GL+ + L + + + C++
Sbjct: 265 LKRLRI-RGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISECRL 323
Query: 482 TAND 485
+ +
Sbjct: 324 ASPE 327
>gi|417301579|ref|ZP_12088730.1| conserved hypothetical protein, secreted [Rhodopirellula baltica
WH47]
gi|327542171|gb|EGF28664.1| conserved hypothetical protein, secreted [Rhodopirellula baltica
WH47]
Length = 442
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 152/320 (47%), Gaps = 29/320 (9%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
PG++D M+ + S L + L+ + +TD L ++Q L F ++D GLE
Sbjct: 105 PGIDDAGMENLTSL-PKLKYLTLADTAITDETLKTAGKLDSVQGL-FLRRTGVTDEGLEL 162
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L GLS L ++ R N I GM + A + L+ + LE+ GLV L L L+S+N
Sbjct: 163 LTGLSKLRAIDLRNTN-IGDAGMDSLAKIKTLIDVQLEKSKVTDEGLVKLAPL-PLKSIN 220
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-- 219
+C I MK L L+ LQ SK+ D+ +A LKGL KL L + GC VT
Sbjct: 221 FNYCTTINGPTMKMLGQTPTLEYLQGDYSKINDASMAELKGLSKLKRLRIRGCDVTGEGI 280
Query: 220 ----------------------CLDSLSALGSLFYLNLNRCQL-SDDGCEKFSKIGSLKV 256
L +S L ++ Y++++ C+L S +G + K+ L
Sbjct: 281 QHIAGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISECRLASPEGIAQLGKLTGLTY 340
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
L L + DE L L NLE LNL S + DE L L + LK L ++ TQ+G
Sbjct: 341 LGLWETKTNDETLAGFGDLVNLEELNLKSTAVTDESLPVLMKMTKLKTLNVAGTQLGDDS 400
Query: 317 LRHLSGLTNLESINLSFTGI 336
L+ L NL+S+N++ T I
Sbjct: 401 FLELAKLPNLKSMNVANTSI 420
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 92/377 (24%), Positives = 168/377 (44%), Gaps = 29/377 (7%)
Query: 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
N+ S + ++ +G+ N K G+ NL L KL+ L +
Sbjct: 71 NVVEFSIANQKGGIEESLQHLSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADT- 129
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
ITD +K L +++ L + + VTD G+ L GL KL ++L + A +DSL+
Sbjct: 130 AITDETLKTAGKLDSVQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAK 189
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDS 285
+ +L + L + +++D+G K + + LK +N + I + L LE L D
Sbjct: 190 IKTLIDVQLEKSKVTDEGLVKLAPL-PLKSINFNYCTTINGPTMKMLGQTPTLEYLQGDY 248
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
I D + L GL LK L + V G++H++G L L + + D L+ ++
Sbjct: 249 SKINDASMAELKGLSKLKRLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVIS 308
Query: 346 GLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
L ++ +++ + R + G+A L LTGLT+L L+ + D A + NL L +
Sbjct: 309 QLPAVTYVDISECRLASPEGIAQLGKLTGLTYLGLWETKTNDETLAGFGDLVNLEELNL- 367
Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
++ +TD++L ++ +T L +LNV+ +++
Sbjct: 368 ------------------------KSTAVTDESLPVLMKMTKLKTLNVAGTQLGDDSFLE 403
Query: 465 LKPLKNLRSLTLESCKV 481
L L NL+S+ + + +
Sbjct: 404 LAKLPNLKSMNVANTSI 420
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 156/336 (46%), Gaps = 6/336 (1%)
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
+ L HL N FN I D G+E+L L L L+ + AIT + +K L
Sbjct: 85 EESLQHLSGIPNTTKATFN-GPGIDDAGMENLTSLPKLKYLTLA-DTAITDETLKTAGKL 142
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
++ L L R GL L GL KL +++++ N I D+ M L+ + L +Q+ S
Sbjct: 143 DSVQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNTN-IGDAGMDSLAKIKTLIDVQLEKS 201
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
KVTD G+ L L L +N C + + L +L YL + +++D +
Sbjct: 202 KVTDEGLVKLAPL-PLKSINFNYCTTINGPTMKMLGQTPTLEYLQGDYSKINDASMAELK 260
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
+ LK L + ++T E + H+ G L L + D+GL ++ L + +++S+
Sbjct: 261 GLSKLKRLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISE 320
Query: 310 TQVGSS-GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
++ S G+ L LT L + L T +D +L L +L+ LNL + +TD L L
Sbjct: 321 CRLASPEGIAQLGKLTGLTYLGLWETKTNDETLAGFGDLVNLEELNLKSTAVTDESLPVL 380
Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
+T L L++ G ++ D L NL+S+ +
Sbjct: 381 MKMTKLKTLNVAGTQLGDDSFLELAKLPNLKSMNVA 416
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 90/317 (28%), Positives = 139/317 (43%), Gaps = 41/317 (12%)
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
V + IA KG + +L +L G P T N + D G E + +
Sbjct: 72 VVEFSIANQKGGIEESLQHLSGIPNTTKA-------------TFNGPGIDDAGMENLTSL 118
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
LK L L ITDE L L +++ L L G+ DEGL LTGL L+ ++L +T
Sbjct: 119 PKLKYLTLADTAITDETLKTAGKLDSVQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNTN 178
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL---------------- 355
+G +G+ L+ + L + L + ++D L KLA L LKS+N
Sbjct: 179 IGDAGMDSLAKIKTLIDVQLEKSKVTDEGLVKLAPL-PLKSINFNYCTTINGPTMKMLGQ 237
Query: 356 ---------DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
D +I D +A L L+ L L + G +T G ++ K L E+
Sbjct: 238 TPTLEYLQGDYSKINDASMAELKGLSKLKRLRIRGCDVTGEGIQHIAGNKALARFELRDS 297
Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNL-TDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
+ D G+K I L ++T +++S+ C L + + + + LTGL L + ++ L
Sbjct: 298 SVDDDGLKVISQLPAVTYVDISE-CRLASPEGIAQLGKLTGLTYLGLWETKTNDETLAGF 356
Query: 466 KPLKNLRSLTLESCKVT 482
L NL L L+S VT
Sbjct: 357 GDLVNLEELNLKSTAVT 373
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 148/333 (44%), Gaps = 6/333 (1%)
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
+ ++ LSG+ N + + D+G+ L L KL L L +T L + L S
Sbjct: 85 EESLQHLSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADTAITDETLKTAGKLDS 144
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
+ L L R ++D+G E + + L+ ++L I D + L + L + L+ +
Sbjct: 145 VQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVQLEKSKVT 204
Query: 290 DEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
DEGLV L L LK + + T + ++ L LE + ++ I+D S+ +L GLS
Sbjct: 205 DEGLVKLAPLP-LKSINFNYCTTINGPTMKMLGQTPTLEYLQGDYSKINDASMAELKGLS 263
Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
LK L + +T G+ + L +L + + D G + + ++I L
Sbjct: 264 KLKRLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISECRL 323
Query: 409 -TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 467
+ G+ + L+ LT L L + D+TL L L LN+ ++ +T L L
Sbjct: 324 ASPEGIAQLGKLTGLTYLGLWE-TKTNDETLAGFGDLVNLEELNLKSTAVTDESLPVLMK 382
Query: 468 LKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 500
+ L++L + ++ D L+ LPNL S
Sbjct: 383 MTKLKTLNVAGTQL--GDDSFLELAKLPNLKSM 413
>gi|225426352|ref|XP_002266070.1| PREDICTED: uncharacterized protein LOC100261612 [Vitis vinifera]
Length = 598
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 138/506 (27%), Positives = 235/506 (46%), Gaps = 66/506 (13%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
+P +++ + + L+ R L LE F+ +++ + L V+ +WM I L S
Sbjct: 40 MPSHLAEALLHRLIRRRILNPSLLEVFK-FSVEKIDLRGESSVDAEWMAYIGG-FCCLCS 97
Query: 62 VDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
++++ +T+S L + NL+ LD + CI+ SD GL HL + L L +T
Sbjct: 98 LNIADCQRITNSALWPIIGMPNLKELDLSRCIKFSDSGLRHLISIRTLQKLCISET-GVT 156
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A G+ + L NL LDL L +L+ L KL+ L++ W + I++ L
Sbjct: 157 ADGINLVSSLTNLSVLDLGGLPVTDLVLSSLQVLTKLQYLDL-WGSKISNKGAADLVVFP 215
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA--------ACLDSLSALGSLFY 232
L L I+ + VT L L + LN+ C + + A L+ ++ G+ F
Sbjct: 216 KLSFLNIAWTDVTT-----LPDLPSIACLNMSNCTIHSMFEGEGAKALLEKITVSGATF- 269
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
LN++ L F + L L++ + + C L + LE L+L +GD+
Sbjct: 270 LNVSEAFL-------FIETSFLSFLDVSRSSLNSFCF--LSCMKALEHLDLSFTMMGDDS 320
Query: 293 LVNLTGL-CNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSL 350
+ + + NL+ L LS+T+V S+G+ L+G + NLE+I+LS T + D ++ ++ +SS+
Sbjct: 321 IQLIACIGANLRNLNLSNTRVSSAGVSILAGCVPNLETISLSHTPVDDVAISYISMMSSV 380
Query: 351 KSLNL-----------DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
K +NL D+ + + LAAL SL + LDL G ++ D L F+ L
Sbjct: 381 KIINLSNTNVKGLIWSDSELVWELSLAALHSLNYVKRLDLEGTQVEDEALCPLLRFQQLN 440
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G LTD L+L Q +S L L++L++ ++ +T+
Sbjct: 441 ELSLKGTRLTD--------------LSLYQ-----------LSSLPNLINLSIGDTVLTN 475
Query: 460 AGLRHLKPLKNLRSLTLESCKVTAND 485
GL KP L+ L L C + D
Sbjct: 476 GGLNSFKPPATLKLLDLRGCWLLTED 501
>gi|297742329|emb|CBI34478.3| unnamed protein product [Vitis vinifera]
Length = 588
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 138/506 (27%), Positives = 235/506 (46%), Gaps = 66/506 (13%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
+P +++ + + L+ R L LE F+ +++ + L V+ +WM I L S
Sbjct: 40 MPSHLAEALLHRLIRRRILNPSLLEVFK-FSVEKIDLRGESSVDAEWMAYIGG-FCCLCS 97
Query: 62 VDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
++++ +T+S L + NL+ LD + CI+ SD GL HL + L L +T
Sbjct: 98 LNIADCQRITNSALWPIIGMPNLKELDLSRCIKFSDSGLRHLISIRTLQKLCISET-GVT 156
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A G+ + L NL LDL L +L+ L KL+ L++ W + I++ L
Sbjct: 157 ADGINLVSSLTNLSVLDLGGLPVTDLVLSSLQVLTKLQYLDL-WGSKISNKGAADLVVFP 215
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA--------ACLDSLSALGSLFY 232
L L I+ + VT L L + LN+ C + + A L+ ++ G+ F
Sbjct: 216 KLSFLNIAWTDVTT-----LPDLPSIACLNMSNCTIHSMFEGEGAKALLEKITVSGATF- 269
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
LN++ L F + L L++ + + C L + LE L+L +GD+
Sbjct: 270 LNVSEAFL-------FIETSFLSFLDVSRSSLNSFCF--LSCMKALEHLDLSFTMMGDDS 320
Query: 293 LVNLTGL-CNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSL 350
+ + + NL+ L LS+T+V S+G+ L+G + NLE+I+LS T + D ++ ++ +SS+
Sbjct: 321 IQLIACIGANLRNLNLSNTRVSSAGVSILAGCVPNLETISLSHTPVDDVAISYISMMSSV 380
Query: 351 KSLNL-----------DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
K +NL D+ + + LAAL SL + LDL G ++ D L F+ L
Sbjct: 381 KIINLSNTNVKGLIWSDSELVWELSLAALHSLNYVKRLDLEGTQVEDEALCPLLRFQQLN 440
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G LTD L+L Q +S L L++L++ ++ +T+
Sbjct: 441 ELSLKGTRLTD--------------LSLYQ-----------LSSLPNLINLSIGDTVLTN 475
Query: 460 AGLRHLKPLKNLRSLTLESCKVTAND 485
GL KP L+ L L C + D
Sbjct: 476 GGLNSFKPPATLKLLDLRGCWLLTED 501
>gi|330842680|ref|XP_003293301.1| hypothetical protein DICPUDRAFT_158109 [Dictyostelium purpureum]
gi|325076385|gb|EGC30175.1| hypothetical protein DICPUDRAFT_158109 [Dictyostelium purpureum]
Length = 684
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 115/388 (29%), Positives = 186/388 (47%), Gaps = 36/388 (9%)
Query: 49 MDVIASQGSSLLSVDLSGSD-VTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHLRGL 105
++ I S G + +DLS + ++ +H + +Q ++F+ CI ++D GLE +
Sbjct: 276 LNQILSSGVRVFKLDLSNQSLIVNNDFLHNCFRYLVEVQDVNFSNCINMTDYGLEVFKNE 335
Query: 106 S---NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
NL L R N +T G K NLK L+ LE L +
Sbjct: 336 KFHRNLRVLDLRHNRNLTDVGCK------------------------NLKNLVNLEELYL 371
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
I+D + L L NLK+L +S K+TD+ + + KLTLLNL +T +
Sbjct: 372 -GSTSISDLGVAFLKQLVNLKTLDVSRCKITDNAMVTISLFSKLTLLNLSETQITDVAIS 430
Query: 223 SLSA-LGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
++ L ++ YL L+ CQ L++ + +++L++ +I+ VHLK L NL
Sbjct: 431 NIHQILTNIQYLYLSNCQKLTNKSLFFLTYFSKMRLLSITGTQISLNGFVHLKRLPNLLY 490
Query: 281 LNL-DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + + D+ +V L L LK L+L+D +S + L L LE + L+ T + D
Sbjct: 491 LELPNRYCLNDQTIVYLNSLTKLKKLDLTDYTYITS-IEPLDNLKYLEELLLANTRVGDS 549
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
S+ + + SL+ L+LD IT G+A L L L L L +I D YL K+LR
Sbjct: 550 SVPAIKKMKSLEVLSLDRTDITSAGVAGLVDL-NLKSLSLMKTKIDDDSINYLSEIKSLR 608
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNL 427
L I +T ++ +KD+++L L+L
Sbjct: 609 QLNISHNNITHKNIEKLKDITNLNSLDL 636
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 109/212 (51%), Gaps = 9/212 (4%)
Query: 267 ECLVHLKGLTNLESLNL-DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
E + K NL L+L + + D G NL L NL+ L L T + G+ L L N
Sbjct: 330 EVFKNEKFHRNLRVLDLRHNRNLTDVGCKNLKNLVNLEELYLGSTSISDLGVAFLKQLVN 389
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFG-AR 383
L+++++S I+D ++ ++ S L LNL QITD ++ + LT + +L L +
Sbjct: 390 LKTLDVSRCKITDNAMVTISLFSKLTLLNLSETQITDVAISNIHQILTNIQYLYLSNCQK 449
Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
+T+ +L F +R L I G ++ G H+K L +L L L L D+T+ ++
Sbjct: 450 LTNKSLFFLTYFSKMRLLSITGTQISLNGFVHLKRLPNLLYLELPNRYCLNDQTIVYLNS 509
Query: 444 LTGLVSLNVSN-SRITSAGLRHLKPLKNLRSL 474
LT L L++++ + ITS ++PL NL+ L
Sbjct: 510 LTKLKKLDLTDYTYITS-----IEPLDNLKYL 536
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 5/143 (3%)
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
R +TD G L +L L L L I+D G A+L+ NL++L++ +TD + I
Sbjct: 350 RNLTDVGCKNLKNLVNLEELYLGSTSISDLGVAFLKQLVNLKTLDVSRCKITDNAMVTIS 409
Query: 418 DLSSLTLLNLSQNCNLTDKTLELISG-LTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLT 475
S LTLLNLS+ +TD + I LT + L +SN ++T+ L L +R L+
Sbjct: 410 LFSKLTLLNLSE-TQITDVAISNIHQILTNIQYLYLSNCQKLTNKSLFFLTYFSKMRLLS 468
Query: 476 LESCKVTANDIKRLQSRDLPNLV 498
+ +++ N L + LPNL+
Sbjct: 469 ITGTQISLNGFVHL--KRLPNLL 489
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 74/143 (51%), Gaps = 1/143 (0%)
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
++D + L L +L+ L L + I+D G+A L L L LD+ +ITD+ +
Sbjct: 351 NLTDVGCKNLKNLVNLEELYLGSTSISDLGVAFLKQLVNLKTLDVSRCKITDNAMVTISL 410
Query: 395 FKNLRSLEICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
F L L + +TD + +I L+++ L LS LT+K+L ++ + + L+++
Sbjct: 411 FSKLTLLNLSETQITDVAISNIHQILTNIQYLYLSNCQKLTNKSLFFLTYFSKMRLLSIT 470
Query: 454 NSRITSAGLRHLKPLKNLRSLTL 476
++I+ G HLK L NL L L
Sbjct: 471 GTQISLNGFVHLKRLPNLLYLEL 493
Score = 38.9 bits (89), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 407 GLTDAGVKHIKDLS---SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
+TD G++ K+ +L +L+L N NLTD + + L L L + ++ I+ G+
Sbjct: 323 NMTDYGLEVFKNEKFHRNLRVLDLRHNRNLTDVGCKNLKNLVNLEELYLGSTSISDLGVA 382
Query: 464 HLKPLKNLRSLTLESCKVTAN 484
LK L NL++L + CK+T N
Sbjct: 383 FLKQLVNLKTLDVSRCKITDN 403
>gi|307108381|gb|EFN56621.1| hypothetical protein CHLNCDRAFT_57520 [Chlorella variabilis]
Length = 790
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 147/457 (32%), Positives = 226/457 (49%), Gaps = 57/457 (12%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTD--SGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
V D ++ +A + L ++D++G + VTD +G L L L+ C ++D GLE
Sbjct: 338 VGDGVLEAVA-RCRGLRALDMAGCTGVTDEGTGFTQLSRLQQLSELNLKGCYSLADDGLE 396
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG----LVNLKGLMK 156
L L +L +L+ + +T +G+ +GL L L+L+ C + G L L L +
Sbjct: 397 LLPTLRSLAALNLQECWQVTDRGLAHLSGLTRLEDLNLQGCRNLANGAGQSLSGLGALHR 456
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L SL ++ C+ + D + L GLT+L+ L +S C ++T G+A L L+ L L L+ C
Sbjct: 457 LTSLCMRGCDRLADGALDFLPGLTSLRQLDLSGCKELTADGLAPLSSLRLLACLRLQHCS 516
Query: 216 --VTAACLDSLSALGSLFYLNLNRC------------------QLSDDGCEKFSKIGSLK 255
AA L LS L SL LNL C QLS +GC +
Sbjct: 517 GLRGAAALRPLSTLSSLTALNLGGCTAIHGQSLRALGTLSALRQLSLEGCR------GVV 570
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD----T 310
+L+ G + L L SLNL C + D GL + L L L LS+ T
Sbjct: 571 LLDAGLEALAPS-------LHRLTSLNLQGCSTLTDAGLQKMGPLTGLVSLNLSECPSIT 623
Query: 311 QVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNL-DARQITDTGLAAL 368
G++ R + L S+ L + G+ D L LAGL++L+SLNL +++ D GLAA+
Sbjct: 624 GAGAAAWR----MPLLASLQLQNSPGVDDAGLAALAGLTALRSLNLKQCKRVGDGGLAAM 679
Query: 369 T-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLL 425
+L LT L L G + +TD+G A L ++L+ LE+ DAG+ + LS+L+ L
Sbjct: 680 APALQRLTALCLQGMSEVTDAGVAQLGALRSLQDLELQFAWQFGDAGIAALTRLSALSRL 739
Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAG 461
+L + +TD +L + +T L+SLNV R+T G
Sbjct: 740 DLMYSWKITDDSLRSLGRMTSLLSLNVLGCHRLTPGG 776
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 149/498 (29%), Positives = 198/498 (39%), Gaps = 105/498 (21%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
++Q L+ C Q+ D L + LS L +S R +T +G+ A L L +L L
Sbjct: 179 PSVQVLELGHCRQLQDWDLADVALLSTLRCVSLRGCEGVTDEGVAQLARLPRLSRLVLRN 238
Query: 141 CTRIHG-GLVNLKGLMKLE----------------------------------------- 158
C ++ GL L G+ E
Sbjct: 239 CVKLTDVGLARLAGVSGRELPQLWAPAGPGSPPPVPRLRSPGARLPAAAAPPPCRRPPLA 298
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQI---SCSKVTDSG------IAYLKGLQKLTLL 209
SL++ C +T+ + ++ CS+V+ G +A +GL+ L +
Sbjct: 299 SLDLAGCVLLTERGFAAAASGLAASLTELLLGGCSRVSTVGDGVLEAVARCRGLRALDMA 358
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLG-FNEITDE 267
G LS L L LNL C L+DDG E + SL LNL ++TD
Sbjct: 359 GCTGVTDEGTGFTQLSRLQQLSELNLKGCYSLADDGLELLPTLRSLAALNLQECWQVTDR 418
Query: 268 CLVHLKGLTNLESLNLDSC-----GIGDE-----GLVNLTGLCNLKCLELSDTQVGSSGL 317
L HL GLT LE LNL C G G L LT LC C L+D L
Sbjct: 419 GLAHLSGLTRLEDLNLQGCRNLANGAGQSLSGLGALHRLTSLCMRGCDRLAD-----GAL 473
Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-----TGLAALTSLT 372
L GLT+L ++LS G + + LA LSSL+ L Q L L++L+
Sbjct: 474 DFLPGLTSLRQLDLS--GCKELTADGLAPLSSLRLLACLRLQHCSGLRGAAALRPLSTLS 531
Query: 373 GLTHLDLFG-ARITDSGAAYLRNFKNLR--SLEICGGG-LTDAGVKHI-KDLSSLTLLNL 427
LT L+L G I L LR SLE C G L DAG++ + L LT LNL
Sbjct: 532 SLTALNLGGCTAIHGQSLRALGTLSALRQLSLEGCRGVVLLDAGLEALAPSLHRLTSLNL 591
Query: 428 SQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLK-PL----------------- 468
LTD L+ + LTGLVSLN+S IT AG + PL
Sbjct: 592 QGCSTLTDAGLQKMGPLTGLVSLNLSECPSITGAGAAAWRMPLLASLQLQNSPGVDDAGL 651
Query: 469 ------KNLRSLTLESCK 480
LRSL L+ CK
Sbjct: 652 AALAGLTALRSLNLKQCK 669
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 123/421 (29%), Positives = 183/421 (43%), Gaps = 67/421 (15%)
Query: 126 AFAGLINLVKLDLERCTRIHGG-LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A A ++ L+L C ++ L ++ L L ++++ C +TD + L+ L L
Sbjct: 174 AAASFPSVQVLELGHCRQLQDWDLADVALLSTLRCVSLRGCEGVTDEGVAQLARLPRLSR 233
Query: 185 LQI-SCSKVTDSGIAYLKGLQKLTLLNL-----------------EGCPVTAACLDSLSA 226
L + +C K+TD G+A L G+ L L G + AA
Sbjct: 234 LVLRNCVKLTDVGLARLAGVSGRELPQLWAPAGPGSPPPVPRLRSPGARLPAAAAPPPCR 293
Query: 227 LGSLFYLNLNRCQLSDD--------------------GCEKFSKIG-----------SLK 255
L L+L C L + GC + S +G L+
Sbjct: 294 RPPLASLDLAGCVLLTERGFAAAASGLAASLTELLLGGCSRVSTVGDGVLEAVARCRGLR 353
Query: 256 VLNL-GFNEITDE--CLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-T 310
L++ G +TDE L L L LNL C + D+GL L L +L L L +
Sbjct: 354 ALDMAGCTGVTDEGTGFTQLSRLQQLSELNLKGCYSLADDGLELLPTLRSLAALNLQECW 413
Query: 311 QVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSL-NLDAR---QITDTGL 365
QV GL HLSGLT LE +NL +++G+ + L+GL +L L +L R ++ D L
Sbjct: 414 QVTDRGLAHLSGLTRLEDLNLQGCRNLANGAGQSLSGLGALHRLTSLCMRGCDRLADGAL 473
Query: 366 AALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSL 422
L LT L LDL G + +T G A L + + L L + C G A ++ + LSSL
Sbjct: 474 DFLPGLTSLRQLDLSGCKELTADGLAPLSSLRLLACLRLQHCSGLRGAAALRPLSTLSSL 533
Query: 423 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR---ITSAGLRHLKP-LKNLRSLTLES 478
T LNL + ++L + L+ L L++ R + AGL L P L L SL L+
Sbjct: 534 TALNLGGCTAIHGQSLRALGTLSALRQLSLEGCRGVVLLDAGLEALAPSLHRLTSLNLQG 593
Query: 479 C 479
C
Sbjct: 594 C 594
Score = 45.8 bits (107), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 67/150 (44%), Gaps = 12/150 (8%)
Query: 360 ITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAY--LRNFKNLRSLEICG-GGLTDAGVKH 415
+ D L A+ GL LD+ G +TD G + L + L L + G L D G++
Sbjct: 338 VGDGVLEAVARCRGLRALDMAGCTGVTDEGTGFTQLSRLQQLSELNLKGCYSLADDGLEL 397
Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG----LRHLKPLKNL 471
+ L SL LNL + +TD+ L +SGLT L LN+ R + G L L L L
Sbjct: 398 LPTLRSLAALNLQECWQVTDRGLAHLSGLTRLEDLNLQGCRNLANGAGQSLSGLGALHRL 457
Query: 472 RSLTLESCKVTANDIKRLQSRDLPNLVSFR 501
SL + C A+ LP L S R
Sbjct: 458 TSLCMRGCDRLADGALDF----LPGLTSLR 483
Score = 45.4 bits (106), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 38 LGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISD 96
L Q V D + +A L ++ L G S+VTD+G+ L +LQ L+ F Q D
Sbjct: 665 LKQCKRVGDGGLAAMAPALQRLTALCLQGMSEVTDAGVAQLGALRSLQDLELQFAWQFGD 724
Query: 97 GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
G+ L LS L+ L + IT +++ + +L+ L++ C R+ G
Sbjct: 725 AGIAALTRLSALSRLDLMYSWKITDDSLRSLGRMTSLLSLNVLGCHRLTPG 775
>gi|421611905|ref|ZP_16053033.1| hypothetical protein RBSH_02839 [Rhodopirellula baltica SH28]
gi|408497310|gb|EKK01841.1| hypothetical protein RBSH_02839 [Rhodopirellula baltica SH28]
Length = 455
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 152/320 (47%), Gaps = 29/320 (9%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
PG++D M+ + S L + L+ + +TD L ++Q L F ++D GLE
Sbjct: 118 PGIDDAGMENLTSL-PKLKYLTLADTAITDETLKTAGKLDSVQGL-FLRRTGVTDEGLEL 175
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L GLS L ++ R +N I GM + A + L + LE+ GLV L L L+S+N
Sbjct: 176 LTGLSKLRAIDLRNSN-IGDAGMDSLAKIKTLADVQLEKSKVTDEGLVKLTSL-PLKSIN 233
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-- 219
+C I MK L L++LQ SK+ D +A LKGL KL L + GC VT
Sbjct: 234 FNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLSKLKRLRIRGCDVTGEGI 293
Query: 220 ----------------------CLDSLSALGSLFYLNLNRCQL-SDDGCEKFSKIGSLKV 256
L +S L ++ Y++++ C+L S +G + ++ L
Sbjct: 294 QHIAGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISECRLASPEGIAQLGELTGLTY 353
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
L L + DE L L NLE LNL S + DE L L + LK L ++ TQ+G
Sbjct: 354 LGLWETKTNDETLSGFGDLINLEELNLKSTSVTDESLPVLMKMIKLKTLNVAGTQLGDDS 413
Query: 317 LRHLSGLTNLESINLSFTGI 336
L+ L NL+S+N++ T I
Sbjct: 414 FLELAKLPNLKSMNVANTSI 433
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 155/336 (46%), Gaps = 6/336 (1%)
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
+ L HL N FN I D G+E+L L L L+ + AIT + +K L
Sbjct: 98 EESLQHLSGIPNTTKATFN-GPGIDDAGMENLTSLPKLKYLTLA-DTAITDETLKTAGKL 155
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
++ L L R GL L GL KL +++++ N I D+ M L+ + L +Q+ S
Sbjct: 156 DSVQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNSN-IGDAGMDSLAKIKTLADVQLEKS 214
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
KVTD G+ L L L +N C + + L +L L + +++D+ +
Sbjct: 215 KVTDEGLVKLTSL-PLKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELK 273
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
+ LK L + ++T E + H+ G L L + D+GL ++ L + +++S+
Sbjct: 274 GLSKLKRLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISE 333
Query: 310 TQVGSS-GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
++ S G+ L LT L + L T +D +L L +L+ LNL + +TD L L
Sbjct: 334 CRLASPEGIAQLGELTGLTYLGLWETKTNDETLSGFGDLINLEELNLKSTSVTDESLPVL 393
Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
+ L L++ G ++ D L NL+S+ +
Sbjct: 394 MKMIKLKTLNVAGTQLGDDSFLELAKLPNLKSMNVA 429
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 88/317 (27%), Positives = 138/317 (43%), Gaps = 41/317 (12%)
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
V + IA KG + +L +L G P T N + D G E + +
Sbjct: 85 VVEFSIANQKGGIEESLQHLSGIPNTTKA-------------TFNGPGIDDAGMENLTSL 131
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
LK L L ITDE L L +++ L L G+ DEGL LTGL L+ ++L ++
Sbjct: 132 PKLKYLTLADTAITDETLKTAGKLDSVQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNSN 191
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL---------------- 355
+G +G+ L+ + L + L + ++D L KL L LKS+N
Sbjct: 192 IGDAGMDSLAKIKTLADVQLEKSKVTDEGLVKLTSL-PLKSINFNYCTTINGPTMKMLGQ 250
Query: 356 ---------DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
D +I D +A L L+ L L + G +T G ++ K L E+
Sbjct: 251 TPTLENLQGDYSKINDESMAELKGLSKLKRLRIRGCDVTGEGIQHIAGNKALARFELRDS 310
Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNL-TDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
+ D G+K I L ++T +++S+ C L + + + + LTGL L + ++ L
Sbjct: 311 SVDDDGLKVISQLPAVTYVDISE-CRLASPEGIAQLGELTGLTYLGLWETKTNDETLSGF 369
Query: 466 KPLKNLRSLTLESCKVT 482
L NL L L+S VT
Sbjct: 370 GDLINLEELNLKSTSVT 386
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 152/333 (45%), Gaps = 6/333 (1%)
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
+ ++ LSG+ N + + D+G+ L L KL L L +T L + L S
Sbjct: 98 EESLQHLSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADTAITDETLKTAGKLDS 157
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
+ L L R ++D+G E + + L+ ++L + I D + L + L + L+ +
Sbjct: 158 VQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNSNIGDAGMDSLAKIKTLADVQLEKSKVT 217
Query: 290 DEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
DEGLV LT L LK + + T + ++ L LE++ ++ I+D S+ +L GLS
Sbjct: 218 DEGLVKLTSLP-LKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLS 276
Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
LK L + +T G+ + L +L + + D G + + ++I L
Sbjct: 277 KLKRLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISECRL 336
Query: 409 -TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 467
+ G+ + +L+ LT L L + D+TL L L LN+ ++ +T L L
Sbjct: 337 ASPEGIAQLGELTGLTYLGLWE-TKTNDETLSGFGDLINLEELNLKSTSVTDESLPVLMK 395
Query: 468 LKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 500
+ L++L + ++ D L+ LPNL S
Sbjct: 396 MIKLKTLNVAGTQL--GDDSFLELAKLPNLKSM 426
>gi|290999929|ref|XP_002682532.1| predicted protein [Naegleria gruberi]
gi|284096159|gb|EFC49788.1| predicted protein [Naegleria gruberi]
Length = 339
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 144/297 (48%), Gaps = 1/297 (0%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ LSGL LKSL I S++ G+ Y+ L++LT L++ + LS L L
Sbjct: 44 VHHLSGLKQLKSLHIYGSQIRGEGVRYISELKQLTNLDIRSHNIFHIGAKYLSELKQLTT 103
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
LN+ + G + S++ L L + N I E +L L L +L + +G+EG
Sbjct: 104 LNIYGNHIGAKGSKYISELNQLTTLFIAENSIGVEGAKYLSELKQLTNLGISVNWLGNEG 163
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
L ++ + L L++S +G+ G +HL L L +N+S I D L + L L +
Sbjct: 164 LAYVSKIKQLTILDISHNDIGAEGGKHLGELKQLTLLNISHNKIQDEGLENIGKLKQLTT 223
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
L ++ I G L+ L LT L++ RI D G+ Y+ K L L I + + G
Sbjct: 224 LIINQNDIGAEGAQYLSELKQLTFLNISDNRIGDEGSKYIGELKQLVDLYINDNDIGEEG 283
Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 469
K+++DL L LN+ N D+ + IS L L L+++N+ I G +HL +K
Sbjct: 284 AKYLRDLKQLIYLNVGGN-EFGDEGAKYISELKQLTKLDINNNSIGDEGTKHLSEMK 339
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 145/321 (45%), Gaps = 26/321 (8%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+ HL GL L SL + I +G++ + L L LD+ H G L L +L
Sbjct: 44 VHHLSGLKQLKSLHIY-GSQIRGEGVRYISELKQLTNLDIRSHNIFHIGAKYLSELKQLT 102
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+LNI + N I K +S L L +L I+ + + G YL L++LT L +
Sbjct: 103 TLNI-YGNHIGAKGSKYISELNQLTTLFIAENSIGVEGAKYLSELKQLTNLGI------- 154
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
S++ LG ++G SKI L +L++ N+I E HL L L
Sbjct: 155 ----SVNWLG-------------NEGLAYVSKIKQLTILDISHNDIGAEGGKHLGELKQL 197
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
LN+ I DEGL N+ L L L ++ +G+ G ++LS L L +N+S I D
Sbjct: 198 TLLNISHNKIQDEGLENIGKLKQLTTLIINQNDIGAEGAQYLSELKQLTFLNISDNRIGD 257
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
+ + L L L ++ I + G L L L +L++ G D GA Y+ K L
Sbjct: 258 EGSKYIGELKQLVDLYINDNDIGEEGAKYLRDLKQLIYLNVGGNEFGDEGAKYISELKQL 317
Query: 399 RSLEICGGGLTDAGVKHIKDL 419
L+I + D G KH+ ++
Sbjct: 318 TKLDINNNSIGDEGTKHLSEM 338
>gi|330506767|ref|YP_004383195.1| internalin-A [Methanosaeta concilii GP6]
gi|328927575|gb|AEB67377.1| internalin-A, putative [Methanosaeta concilii GP6]
Length = 567
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 156/421 (37%), Positives = 226/421 (53%), Gaps = 52/421 (12%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+NL LD + QI+D L GL+NLT L NN IT + + +GLINL+ LDL
Sbjct: 166 TNLTDLDLSTN-QITDAS--PLSGLTNLTDLDL-DNNQIT--DVSSLSGLINLMNLDLS- 218
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
RI V+L GL + L++ W N ITD LSGLTNL L +S +++ D ++ L
Sbjct: 219 SNRITN--VSLSGLTNVVWLDL-WGNQITD---VTLSGLTNLTWLDVSRNQIAD--VSSL 270
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
GL LT L L GC + SLS L +L L+L+ Q++D S + +L L+L
Sbjct: 271 SGLTNLTKLYL-GCN-QITDVSSLSGLTNLTDLDLSTNQITD--ASPLSGLTNLTYLDLD 326
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
N I D V L LTNL L L + I D + +L+GL NLK L+LS+ Q+ + L
Sbjct: 327 NNRIND---VSLSDLTNLTDLELSNNQIND--VSSLSGLTNLKDLDLSNNQIN--DISSL 379
Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
SGLTNL + LS I++ + L+ L+SL+ L+LD QI D +++L++LT L L L
Sbjct: 380 SGLTNLTDLELSSNEITN--ISSLSSLASLRCLDLDNNQIID--VSSLSALTSLKWLRLC 435
Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
TD A+ L + NLR L++ +TD V + L +L LNLS N +TD +
Sbjct: 436 SNHATD--ASSLSSLVNLRWLDLSSNQITD--VSPLSGLYNLGWLNLSSN-QITD--VSP 488
Query: 441 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 500
+SGL L L++S+++IT + PL NL +L L+S+ +P+ +
Sbjct: 489 LSGLANLTGLDLSSNQIT-----DVSPLSNLTNLIW----------MDLRSKQIPDASTL 533
Query: 501 R 501
R
Sbjct: 534 R 534
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 132/370 (35%), Positives = 190/370 (51%), Gaps = 51/370 (13%)
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
I L+ D+ I G L+ + LE+L+++ N I SD LSGLT LK L++S +
Sbjct: 60 IKLLNADMSSIKDITG----LERCINLENLSLR-ENEI--SDASSLSGLTGLKRLELSSN 112
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
++TD L GL L L+L +T L L+ L +L +S S
Sbjct: 113 QITD---VSLSGLANLETLSLWDNHITNVSLSGLTNLDTLLLWGNKIINVS-----SLSG 164
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD- 309
+ +L L+L N+ITD L GLTNL L+LD+ I D + +L+GL NL L+LS
Sbjct: 165 LTNLTDLDLSTNQITDAS--PLSGLTNLTDLDLDNNQITD--VSSLSGLINLMNLDLSSN 220
Query: 310 --TQVGSSGLRH---------------LSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
T V SGL + LSGLTNL +++S I+D S L+GL++L
Sbjct: 221 RITNVSLSGLTNVVWLDLWGNQITDVTLSGLTNLTWLDVSRNQIADVS--SLSGLTNLTK 278
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
L L QITD +++L+ LT LT LDL +ITD A+ L NL L++ + D
Sbjct: 279 LYLGCNQITD--VSSLSGLTNLTDLDLSTNQITD--ASPLSGLTNLTYLDLDNNRINDVS 334
Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 472
+ DL++LT L LS N + D + +SGLT L L++SN++I + L L NL
Sbjct: 335 ---LSDLTNLTDLELSNN-QIND--VSSLSGLTNLKDLDLSNNQIN--DISSLSGLTNLT 386
Query: 473 SLTLESCKVT 482
L L S ++T
Sbjct: 387 DLELSSNEIT 396
>gi|149177419|ref|ZP_01856023.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148843752|gb|EDL58111.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 375
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 97/285 (34%), Positives = 154/285 (54%), Gaps = 3/285 (1%)
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
+DF +I D L+ + GLS+L SL IT +++ + L LDL C+
Sbjct: 76 EVDFR-GTKIDDAALKEIAGLSHLRSL-LLNETPITDAALESVGKVTTLENLDLRNCSLN 133
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
+ + L GL KL++L + + I D M ++ LTNLK+L + V+ G++ LK L
Sbjct: 134 NKAISYLTGLSKLKALRLSGNSDIDDDAMADINQLTNLKALMLDFLWVSGDGLSQLKDLN 193
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
KL L L V L +L+ L L++ Q+SD+G F+KI L+ ++L N +
Sbjct: 194 KLEELYLAKTLVDDDGLATLTQFPKLKKTRLSQNQISDEGLAVFAKIPQLEEIDLSENSL 253
Query: 265 -TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
+D + HL GL L+ LNL G+ D G+ L GL +L+ L L +T++ ++GL++L +
Sbjct: 254 LSDAGMKHLSGLGKLKKLNLWRVGLTDAGVEPLQGLTSLEWLNLDNTRLTNAGLKYLKDM 313
Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
LE ++L T +SD L+ L L+SLK L L +T+ G+A L
Sbjct: 314 QKLEFLHLGSTAVSDEGLKHLEPLTSLKELKLTRTAVTEKGVAEL 358
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 142/266 (53%), Gaps = 2/266 (0%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I D+ +K ++GL++L+SL ++ + +TD+ + + + L L+L C + + L+ L
Sbjct: 84 IDDAALKEIAGLSHLRSLLLNETPITDAALESVGKVTTLENLDLRNCSLNNKAISYLTGL 143
Query: 228 GSLFYLNLN-RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
L L L+ + DD +++ +LK L L F ++ + L LK L LE L L
Sbjct: 144 SKLKALRLSGNSDIDDDAMADINQLTNLKALMLDFLWVSGDGLSQLKDLNKLEELYLAKT 203
Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI-SDGSLRKLA 345
+ D+GL LT LK LS Q+ GL + + LE I+LS + SD ++ L+
Sbjct: 204 LVDDDGLATLTQFPKLKKTRLSQNQISDEGLAVFAKIPQLEEIDLSENSLLSDAGMKHLS 263
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
GL LK LNL +TD G+ L LT L L+L R+T++G YL++ + L L +
Sbjct: 264 GLGKLKKLNLWRVGLTDAGVEPLQGLTSLEWLNLDNTRLTNAGLKYLKDMQKLEFLHLGS 323
Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNC 431
++D G+KH++ L+SL L L++
Sbjct: 324 TAVSDEGLKHLEPLTSLKELKLTRTA 349
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 149/290 (51%), Gaps = 4/290 (1%)
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
++ G + A L ++ L L L LN ++D E K+ +L+ L+L + ++
Sbjct: 77 VDFRGTKIDDAALKEIAGLSHLRSLLLNETPITDAALESVGKVTTLENLDLRNCSLNNKA 136
Query: 269 LVHLKGLTNLESLNLD-SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
+ +L GL+ L++L L + I D+ + ++ L NLK L L V GL L L LE
Sbjct: 137 ISYLTGLSKLKALRLSGNSDIDDDAMADINQLTNLKALMLDFLWVSGDGLSQLKDLNKLE 196
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF-GARITD 386
+ L+ T + D L L LK L QI+D GLA + L +DL + ++D
Sbjct: 197 ELYLAKTLVDDDGLATLTQFPKLKKTRLSQNQISDEGLAVFAKIPQLEEIDLSENSLLSD 256
Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 446
+G +L L+ L + GLTDAGV+ ++ L+SL LNL N LT+ L+ + +
Sbjct: 257 AGMKHLSGLGKLKKLNLWRVGLTDAGVEPLQGLTSLEWLNLD-NTRLTNAGLKYLKDMQK 315
Query: 447 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 496
L L++ ++ ++ GL+HL+PL +L+ L L VT + L+ + LPN
Sbjct: 316 LEFLHLGSTAVSDEGLKHLEPLTSLKELKLTRTAVTEKGVAELKKK-LPN 364
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 141/266 (53%), Gaps = 3/266 (1%)
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
G + ++ ++ D ++ + + L+ L L ITD L + +T LE+L+L +C
Sbjct: 72 GYVIEVDFRGTKIDDAALKEIAGLSHLRSLLLNETPITDAALESVGKVTTLENLDLRNCS 131
Query: 288 IGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
+ ++ + LTGL LK L LS ++ + + ++ LTNL+++ L F +S L +L
Sbjct: 132 LNNKAISYLTGLSKLKALRLSGNSDIDDDAMADINQLTNLKALMLDFLWVSGDGLSQLKD 191
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
L+ L+ L L + D GLA LT L L +I+D G A L +++
Sbjct: 192 LNKLEELYLAKTLVDDDGLATLTQFPKLKKTRLSQNQISDEGLAVFAKIPQLEEIDLSEN 251
Query: 407 G-LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
L+DAG+KH+ L L LNL + LTD +E + GLT L LN+ N+R+T+AGL++L
Sbjct: 252 SLLSDAGMKHLSGLGKLKKLNLWR-VGLTDAGVEPLQGLTSLEWLNLDNTRLTNAGLKYL 310
Query: 466 KPLKNLRSLTLESCKVTANDIKRLQS 491
K ++ L L L S V+ +K L+
Sbjct: 311 KDMQKLEFLHLGSTAVSDEGLKHLEP 336
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 151/309 (48%), Gaps = 19/309 (6%)
Query: 28 FRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLD 87
FR + D L + G+ S L S+ L+ + +TD+ L + + L++LD
Sbjct: 79 FRGTKIDDAALKEIAGL------------SHLRSLLLNETPITDAALESVGKVTTLENLD 126
Query: 88 FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
C +++ + +L GLS L +L N+ I M L NL L L+ G
Sbjct: 127 LRNC-SLNNKAISYLTGLSKLKALRLSGNSDIDDDAMADINQLTNLKALMLDFLWVSGDG 185
Query: 148 LVNLKGLMKLESLNIKWCNCITDSD-MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
L LK L KLE L + + D D + L+ LK ++S ++++D G+A + +L
Sbjct: 186 LSQLKDLNKLEELYL--AKTLVDDDGLATLTQFPKLKKTRLSQNQISDEGLAVFAKIPQL 243
Query: 207 TLLNL-EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
++L E ++ A + LS LG L LNL R L+D G E + SL+ LNL +T
Sbjct: 244 EEIDLSENSLLSDAGMKHLSGLGKLKKLNLWRVGLTDAGVEPLQGLTSLEWLNLDNTRLT 303
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLT 324
+ L +LK + LE L+L S + DEGL +L L +LK L+L+ T V G+ L L
Sbjct: 304 NAGLKYLKDMQKLEFLHLGSTAVSDEGLKHLEPLTSLKELKLTRTAVTEKGVAELKKKLP 363
Query: 325 NLESINLSF 333
N E I L +
Sbjct: 364 NTE-IQLKY 371
>gi|149175887|ref|ZP_01854505.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148845334|gb|EDL59679.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 360
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 119/219 (54%), Gaps = 1/219 (0%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
GLV+LK +L+ L + W ++D + L L+ L L + + V+ SG+A+L+GL L
Sbjct: 128 GLVHLKRFHRLKRLML-WNTSVSDDGLVHLKELSQLNHLDLFYTPVSGSGLAHLQGLTNL 186
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
T LNL+G VT A L ++ +L LNLN+ +SD G + L +L L ++T
Sbjct: 187 TWLNLQGTAVTNAGLKQVNCFSALRVLNLNQTSISDAGLVHLRDLPQLIILQLEQTQVTG 246
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
L L L L L L+ I D + +L L LEL DTQ+ +GL HLSGL L
Sbjct: 247 TGLSELSSLPKLYCLKLNGSLINDSSMSHLKSFKTLIRLELQDTQISDAGLVHLSGLPLL 306
Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
+++NLS T ++D L L GL LK++ L Q+T GL
Sbjct: 307 DALNLSGTQVTDAGLVYLQGLPRLKNVYLKNTQVTSEGL 345
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 125/227 (55%), Gaps = 1/227 (0%)
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
LS+ G + LK L L ++D+ LVHLK L+ L L+L + GL +L GL
Sbjct: 124 LSNTGLVHLKRFHRLKRLMLWNTSVSDDGLVHLKELSQLNHLDLFYTPVSGSGLAHLQGL 183
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
NL L L T V ++GL+ ++ + L +NL+ T ISD L L L L L L+ Q
Sbjct: 184 TNLTWLNLQGTAVTNAGLKQVNCFSALRVLNLNQTSISDAGLVHLRDLPQLIILQLEQTQ 243
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
+T TGL+ L+SL L L L G+ I DS ++L++FK L LE+ ++DAG+ H+ L
Sbjct: 244 VTGTGLSELSSLPKLYCLKLNGSLINDSSMSHLKSFKTLIRLELQDTQISDAGLVHLSGL 303
Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 466
L LNLS +TD L + GL L ++ + N+++TS GL K
Sbjct: 304 PLLDALNLS-GTQVTDAGLVYLQGLPRLKNVYLKNTQVTSEGLEQRK 349
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 138/238 (57%), Gaps = 7/238 (2%)
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
+++ LVHLK L+ L L + + D+GLV+L L L L+L T V SGL HL GL
Sbjct: 124 LSNTGLVHLKRFHRLKRLMLWNTSVSDDGLVHLKELSQLNHLDLFYTPVSGSGLAHLQGL 183
Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
TNL +NL T +++ L+++ S+L+ LNL+ I+D GL L L L L L +
Sbjct: 184 TNLTWLNLQGTAVTNAGLKQVNCFSALRVLNLNQTSISDAGLVHLRDLPQLIILQLEQTQ 243
Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
+T +G + L + L L++ G + D+ + H+K +L L L Q+ ++D L +SG
Sbjct: 244 VTGTGLSELSSLPKLYCLKLNGSLINDSSMSHLKSFKTLIRLEL-QDTQISDAGLVHLSG 302
Query: 444 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR-----LQSRD-LP 495
L L +LN+S +++T AGL +L+ L L+++ L++ +VT+ +++ QSRD LP
Sbjct: 303 LPLLDALNLSGTQVTDAGLVYLQGLPRLKNVYLKNTQVTSEGLEQRKLILQQSRDPLP 360
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 129/258 (50%), Gaps = 27/258 (10%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+ LSG ++++GL+HLK L+ L + +SD GL HL+ LS L
Sbjct: 117 ISLSGKGLSNTGLVHLKRFHRLKRLML-WNTSVSDDGLVHLKELSQLN------------ 163
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
LDL GL +L+GL L LN++ +T++ +K ++ +
Sbjct: 164 -------------HLDLFYTPVSGSGLAHLQGLTNLTWLNLQ-GTAVTNAGLKQVNCFSA 209
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L+ L ++ + ++D+G+ +L+ L +L +L LE VT L LS+L L+ L LN ++
Sbjct: 210 LRVLNLNQTSISDAGLVHLRDLPQLIILQLEQTQVTGTGLSELSSLPKLYCLKLNGSLIN 269
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
D +L L L +I+D LVHL GL L++LNL + D GLV L GL
Sbjct: 270 DSSMSHLKSFKTLIRLELQDTQISDAGLVHLSGLPLLDALNLSGTQVTDAGLVYLQGLPR 329
Query: 302 LKCLELSDTQVGSSGLRH 319
LK + L +TQV S GL
Sbjct: 330 LKNVYLKNTQVTSEGLEQ 347
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 135/268 (50%), Gaps = 3/268 (1%)
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
+K ++ES+++ + DSD+ L+ NL+ + +S ++++G+ +LK +L L
Sbjct: 85 QMKSFDEVESISL---DVTQDSDLVWLNDFPNLERISLSGKGLSNTGLVHLKRFHRLKRL 141
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
L V+ L L L L +L+L +S G + +L LNL +T+ L
Sbjct: 142 MLWNTSVSDDGLVHLKELSQLNHLDLFYTPVSGSGLAHLQGLTNLTWLNLQGTAVTNAGL 201
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
+ + L LNL+ I D GLV+L L L L+L TQV +GL LS L L +
Sbjct: 202 KQVNCFSALRVLNLNQTSISDAGLVHLRDLPQLIILQLEQTQVTGTGLSELSSLPKLYCL 261
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
L+ + I+D S+ L +L L L QI+D GL L+ L L L+L G ++TD+G
Sbjct: 262 KLNGSLINDSSMSHLKSFKTLIRLELQDTQISDAGLVHLSGLPLLDALNLSGTQVTDAGL 321
Query: 390 AYLRNFKNLRSLEICGGGLTDAGVKHIK 417
YL+ L+++ + +T G++ K
Sbjct: 322 VYLQGLPRLKNVYLKNTQVTSEGLEQRK 349
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 94/191 (49%), Gaps = 3/191 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L +DL + V+ SGL HL+ +NL L+ +++ GL+ + S L L+ +
Sbjct: 160 SQLNHLDLFYTPVSGSGLAHLQGLTNLTWLNLQ-GTAVTNAGLKQVNCFSALRVLNLNQ- 217
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+I+ G+ L L+ L LE+ GL L L KL L + + I DS M L
Sbjct: 218 TSISDAGLVHLRDLPQLIILQLEQTQVTGTGLSELSSLPKLYCLKLN-GSLINDSSMSHL 276
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
L L++ ++++D+G+ +L GL L LNL G VT A L L L L + L
Sbjct: 277 KSFKTLIRLELQDTQISDAGLVHLSGLPLLDALNLSGTQVTDAGLVYLQGLPRLKNVYLK 336
Query: 237 RCQLSDDGCEK 247
Q++ +G E+
Sbjct: 337 NTQVTSEGLEQ 347
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 73/145 (50%), Gaps = 3/145 (2%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S+L ++L+ + ++D+GL+HL+D L L Q++ GL L L L L
Sbjct: 208 SALRVLNLNQTSISDAGLVHLRDLPQLIILQLE-QTQVTGTGLSELSSLPKLYCLKL-NG 265
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ I M L++L+L+ GLV+L GL L++LN+ +TD+ + L
Sbjct: 266 SLINDSSMSHLKSFKTLIRLELQDTQISDAGLVHLSGLPLLDALNLS-GTQVTDAGLVYL 324
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLK 201
GL LK++ + ++VT G+ K
Sbjct: 325 QGLPRLKNVYLKNTQVTSEGLEQRK 349
>gi|149175664|ref|ZP_01854283.1| hypothetical protein PM8797T_31103 [Planctomyces maris DSM 8797]
gi|148845383|gb|EDL59727.1| hypothetical protein PM8797T_31103 [Planctomyces maris DSM 8797]
Length = 660
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 119/428 (27%), Positives = 210/428 (49%), Gaps = 30/428 (7%)
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAI-TAQGMKAFA-----GLIN------------- 132
+++++ LRGL L SL+ N A+G+ F LIN
Sbjct: 226 VRLAEIDFTQLRGLDGLRSLTLEGVNLYGRAEGLGFFPRLEALTLINTNISDQDRGRITT 285
Query: 133 LVKLDLERCTRIHGG--LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC- 189
+L R +H G L +L KLE L ++ C + + D+ L LT L+ L +S
Sbjct: 286 FTQLKTLRLENVHLGRHLNDLSTFRKLEKLALRNCG-LDEDDVATLGSLTQLRELDLSGN 344
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGC--PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
S + D + +L+ L +L L + +T L L L L+L C L DG
Sbjct: 345 SSLNDVALFHLRNLNQLEELKVASYYNRITEKGLQYLRQPRKLKTLDLIGCMLKADGLAA 404
Query: 248 FSKIGSLKVLNLGF---NEITDECLVHLKGLTNLESLNLDSCGI-GDEGLVNLTGLCNLK 303
+ SL+ LNL + L+ L +L L L+ + G EGL +L+ L L+
Sbjct: 405 IGDVSSLETLNLKVYCPERVDAHFFDPLRHLKSLRELTLECRQLKGGEGLSSLSQLPELE 464
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
L L T++ +R ++ +L+++ L+ ++D + L L L+SLNLD ++ +
Sbjct: 465 ALHLLQTKLQDEDIRWIANCNSLKALTLNSYEVTDQGVSSLGSLKQLESLNLDRCRLDGS 524
Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
GL +L L LT + L +TD+ +L + L+ L + G ++ A ++ +KDL L+
Sbjct: 525 GLVSLQQLHRLTDVSLNHTGVTDAVIPFLSSLSQLKRLTLENGRVSSATLESLKDLKKLS 584
Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 483
LNL+ NC ++D+ EL++ ++ L +LN++ +++++ GL L+ L +L+L KVT
Sbjct: 585 ELNLT-NCPVSDEICELLTQMSALRTLNLNKTKVSNIGLEGLQKATGLETLSLRRTKVTR 643
Query: 484 NDIKRLQS 491
+++L++
Sbjct: 644 QGVQQLRT 651
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 103/340 (30%), Positives = 150/340 (44%), Gaps = 50/340 (14%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF-RRNNAITAQGMKAFAGLINLVKLDLE 139
+ L+ LD + ++D L HLR L+ L L N IT +G++ L LDL
Sbjct: 334 TQLRELDLSGNSSLNDVALFHLRNLNQLEELKVASYYNRITEKGLQYLRQPRKLKTLDLI 393
Query: 140 RCTRIHGGLVNLKGLMKLESLNIK-WCNCITDSDM-KPLSGLTNLKSLQISCSKVTDSGI 197
C GL + + LE+LN+K +C D+ PL L +L+ L + C +
Sbjct: 394 GCMLKADGLAAIGDVSSLETLNLKVYCPERVDAHFFDPLRHLKSLRELTLECRQ------ 447
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
LKG L SLS L L L+L + +L D+ + SLK L
Sbjct: 448 --LKG---------------GEGLSSLSQLPELEALHLLQTKLQDEDIRWIANCNSLKAL 490
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN---------------------- 295
L E+TD+ + L L LESLNLD C + GLV+
Sbjct: 491 TLNSYEVTDQGVSSLGSLKQLESLNLDRCRLDGSGLVSLQQLHRLTDVSLNHTGVTDAVI 550
Query: 296 --LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L+ L LK L L + +V S+ L L L L +NL+ +SD L +S+L++L
Sbjct: 551 PFLSSLSQLKRLTLENGRVSSATLESLKDLKKLSELNLTNCPVSDEICELLTQMSALRTL 610
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
NL+ ++++ GL L TGL L L ++T G LR
Sbjct: 611 NLNKTKVSNIGLEGLQKATGLETLSLRRTKVTRQGVQQLR 650
>gi|42567079|ref|NP_194115.3| leucine-rich repeat-containing protein [Arabidopsis thaliana]
gi|20466546|gb|AAM20590.1| unknown protein [Arabidopsis thaliana]
gi|22136448|gb|AAM91302.1| unknown protein [Arabidopsis thaliana]
gi|51971383|dbj|BAD44356.1| putative protein [Arabidopsis thaliana]
gi|332659411|gb|AEE84811.1| leucine-rich repeat-containing protein [Arabidopsis thaliana]
Length = 597
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 138/446 (30%), Positives = 215/446 (48%), Gaps = 71/446 (15%)
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMKLESLNIKWCNCIT 169
+ R +++ A+ M G +NL+ L+L C RI+ L + GL L L++ C +T
Sbjct: 66 IDLRGKSSVNAEWMAYIGGFVNLITLNLSDCQRINSSTLWPITGLTSLTELDLSRCFKVT 125
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
D+ MK L + NLK L IS + VT+ GI+ L L+KL+LL+L G PVT L SL AL
Sbjct: 126 DAGMKHLQSVVNLKKLWISQTGVTEVGISLLASLKKLSLLDLGGLPVTDQNLISLQALTK 185
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L YL++ +++ G K +L LNL + IT + +LE L++++C I
Sbjct: 186 LEYLDIWGSNVTNQGAVSILKFSNLSFLNLSWTSIT-----QTPNIPHLECLHMNTCTIV 240
Query: 290 DEGLVNLTGLCNLKCLELS------DTQ--------------VGSSGLRHLSGLT---NL 326
E + + L +LK L LS +T+ V + L++ S L NL
Sbjct: 241 SEPKTH-SSLASLKKLVLSGANFSAETESLSFTNKSCITYLDVSKTSLKNFSFLETMFNL 299
Query: 327 ESINLSFTGISDGSLRKLAGL-SSLKSLNLDARQITDTGLAAL----------------- 368
E ++LS T D S+ +A + +LK+LN+ QIT +G+ L
Sbjct: 300 EHLDLSSTAFGDDSVGFVACVGENLKNLNVSDTQITPSGVGNLAGHVPQLETLSMSQTFV 359
Query: 369 ---------TSLTGLTHLDL-------FGARIT-----DSGAAYLRNFKNLRSLEICGGG 407
T++ + LDL F I+ + A L++ +L +L +
Sbjct: 360 DDLSILLISTTMPCIKALDLGMNSTLGFYYLISPQEEKEKSLAALQSLTSLETLSLEHPY 419
Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 467
L D + + L+ LT L+L+ + +LTD TL +S L LVSL V + +TS GL +P
Sbjct: 420 LGDKALSGLSSLTGLTHLSLT-STSLTDSTLHHLSSLPNLVSLGVRDGVLTSNGLEKFRP 478
Query: 468 LKNLRSLTLESCK-VTANDIKRLQSR 492
LR+L L+ C +T +DI L R
Sbjct: 479 PNRLRTLDLQGCWLLTKDDIAGLCKR 504
>gi|46447569|ref|YP_008934.1| hypothetical protein pc1935 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401210|emb|CAF24659.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 504
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 109/320 (34%), Positives = 161/320 (50%), Gaps = 49/320 (15%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
+++L+F+ ++D L L+ NL +L FR+ +TA G+ L+ L LDL C
Sbjct: 227 IEALNFSNQAYLTDVHLLALKDCKNLKALYFRKCPNLTAAGLAYLRPLVALQHLDLNYCY 286
Query: 143 RI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS--CS-KVTDSGIA 198
+ GL +L L+ L+ LN+ +TD+ + LS LT L+ L +S C+ K+TD+G+A
Sbjct: 287 NLTDAGLAHLAPLVALKHLNLSGHGYLTDAGLAHLSPLTALQHLNLSECCNYKLTDAGLA 346
Query: 199 YLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
+L+ L L LNL C T A L L L +L +LNL+ C IG+
Sbjct: 347 HLRPLVALKYLNLSRCSKFTGAGLAHLRPLTALQHLNLSGC----------GGIGA---- 392
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSG 316
+ L HL+ LT L+ LNL CG+ D+ L +LT L L+ L+LS+ + +G
Sbjct: 393 -----GLASAGLAHLRPLTALQHLNLSWCGVTDDELAHLTPLEALQYLDLSNCWHLTDAG 447
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
L HL+ L L+ +NLS Q+T+ GLA L LT L H
Sbjct: 448 LAHLNPLIALQHLNLS-----------------------KCDQLTNAGLAHLIPLTALQH 484
Query: 377 LDLFG-ARITDSGAAYLRNF 395
L+L G + +TD G A LR F
Sbjct: 485 LNLSGCSNLTDDGLARLRPF 504
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 101/260 (38%), Positives = 139/260 (53%), Gaps = 14/260 (5%)
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEK 247
+ +TD + LK + L L CP +TAA L L L +L +L+LN C L+D G
Sbjct: 236 AYLTDVHLLALKDCKNLKALYFRKCPNLTAAGLAYLRPLVALQHLDLNYCYNLTDAGLAH 295
Query: 248 FSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC---GIGDEGLVNLTGLCNLK 303
+ + +LK LNL G +TD L HL LT L+ LNL C + D GL +L L LK
Sbjct: 296 LAPLVALKHLNLSGHGYLTDAGLAHLSPLTALQHLNLSECCNYKLTDAGLAHLRPLVALK 355
Query: 304 CLELSD-TQVGSSGLRHLSGLTNLESINLSF-----TGISDGSLRKLAGLSSLKSLNLDA 357
L LS ++ +GL HL LT L+ +NLS G++ L L L++L+ LNL
Sbjct: 356 YLNLSRCSKFTGAGLAHLRPLTALQHLNLSGCGGIGAGLASAGLAHLRPLTALQHLNLSW 415
Query: 358 RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKH 415
+TD LA LT L L +LDL +TD+G A+L L+ L + LT+AG+ H
Sbjct: 416 CGVTDDELAHLTPLEALQYLDLSNCWHLTDAGLAHLNPLIALQHLNLSKCDQLTNAGLAH 475
Query: 416 IKDLSSLTLLNLSQNCNLTD 435
+ L++L LNLS NLTD
Sbjct: 476 LIPLTALQHLNLSGCSNLTD 495
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 97/276 (35%), Positives = 142/276 (51%), Gaps = 37/276 (13%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD L+ LKDC NL++L F C ++ GL +LR
Sbjct: 238 LTDVHLLALKDCKNLKALYFRKCPNLTAAGLAYLR------------------------- 272
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ L LDL C + GL +L L+ L+ LN+ +TD+ + LS LT L+ L +
Sbjct: 273 PLVALQHLDLNYCYNLTDAGLAHLAPLVALKHLNLSGHGYLTDAGLAHLSPLTALQHLNL 332
Query: 188 S--CS-KVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC----- 238
S C+ K+TD+G+A+L+ L L LNL C T A L L L +L +LNL+ C
Sbjct: 333 SECCNYKLTDAGLAHLRPLVALKYLNLSRCSKFTGAGLAHLRPLTALQHLNLSGCGGIGA 392
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT 297
L+ G + +L+ LNL + +TD+ L HL L L+ L+L +C + D GL +L
Sbjct: 393 GLASAGLAHLRPLTALQHLNLSWCGVTDDELAHLTPLEALQYLDLSNCWHLTDAGLAHLN 452
Query: 298 GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS 332
L L+ L LS Q+ ++GL HL LT L+ +NLS
Sbjct: 453 PLIALQHLNLSKCDQLTNAGLAHLIPLTALQHLNLS 488
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 127/241 (52%), Gaps = 11/241 (4%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++T +GL +L+ LQ LD N+C ++D GL HL L L L+ + +T G+
Sbjct: 261 PNLTAAGLAYLRPLVALQHLDLNYCYNLTDAGLAHLAPLVALKHLNLSGHGYLTDAGLAH 320
Query: 127 FAGLINLVKLDLERCTRIH---GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L L L+L C GL +L+ L+ L+ LN+ C+ T + + L LT L+
Sbjct: 321 LSPLTALQHLNLSECCNYKLTDAGLAHLRPLVALKYLNLSRCSKFTGAGLAHLRPLTALQ 380
Query: 184 SLQIS-CSKV----TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L +S C + +G+A+L+ L L LNL C VT L L+ L +L YL+L+ C
Sbjct: 381 HLNLSGCGGIGAGLASAGLAHLRPLTALQHLNLSWCGVTDDELAHLTPLEALQYLDLSNC 440
Query: 239 -QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVN 295
L+D G + + +L+ LNL +++T+ L HL LT L+ LNL C + D+GL
Sbjct: 441 WHLTDAGLAHLNPLIALQHLNLSKCDQLTNAGLAHLIPLTALQHLNLSGCSNLTDDGLAR 500
Query: 296 L 296
L
Sbjct: 501 L 501
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 129/241 (53%), Gaps = 13/241 (5%)
Query: 264 ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHLS 321
+T L +L+ L L+ L+L+ C + D GL +L L LK L LS + +GL HLS
Sbjct: 263 LTAAGLAYLRPLVALQHLDLNYCYNLTDAGLAHLAPLVALKHLNLSGHGYLTDAGLAHLS 322
Query: 322 GLTNLESINLSF---TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHL 377
LT L+ +NLS ++D L L L +LK LNL + T GLA L LT L HL
Sbjct: 323 PLTALQHLNLSECCNYKLTDAGLAHLRPLVALKYLNLSRCSKFTGAGLAHLRPLTALQHL 382
Query: 378 DL-----FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
+L GA + +G A+LR L+ L + G+TD + H+ L +L L+LS +
Sbjct: 383 NLSGCGGIGAGLASAGLAHLRPLTALQHLNLSWCGVTDDELAHLTPLEALQYLDLSNCWH 442
Query: 433 LTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQ 490
LTD L ++ L L LN+S ++T+AGL HL PL L+ L L C +T + + RL+
Sbjct: 443 LTDAGLAHLNPLIALQHLNLSKCDQLTNAGLAHLIPLTALQHLNLSGCSNLTDDGLARLR 502
Query: 491 S 491
Sbjct: 503 P 503
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 109/221 (49%), Gaps = 30/221 (13%)
Query: 278 LESLNL-DSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-T 334
+E+LN + + D L+ L NLK L + ++GL +L L L+ ++L++
Sbjct: 227 IEALNFSNQAYLTDVHLLALKDCKNLKALYFRKCPNLTAAGLAYLRPLVALQHLDLNYCY 286
Query: 335 GISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
++D L LA L +LK LNL +TD GLA L+ LT L HL+L
Sbjct: 287 NLTDAGLAHLAPLVALKHLNLSGHGYLTDAGLAHLSPLTALQHLNLS------------- 333
Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
E C LTDAG+ H++ L +L LNLS+ T L + LT L LN+S
Sbjct: 334 --------ECCNYKLTDAGLAHLRPLVALKYLNLSRCSKFTGAGLAHLRPLTALQHLNLS 385
Query: 454 N-----SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
+ + SAGL HL+PL L+ L L C VT +++ L
Sbjct: 386 GCGGIGAGLASAGLAHLRPLTALQHLNLSWCGVTDDELAHL 426
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 73/143 (51%), Gaps = 7/143 (4%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDG----GLEHLRGLSNLTSLSFRRNNAITAQ 122
S T +GL HL+ + LQ L+ + C I G GL HLR L+ L L+ +T
Sbjct: 363 SKFTGAGLAHLRPLTALQHLNLSGCGGIGAGLASAGLAHLRPLTALQHLNLSW-CGVTDD 421
Query: 123 GMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+ L L LDL C + GL +L L+ L+ LN+ C+ +T++ + L LT
Sbjct: 422 ELAHLTPLEALQYLDLSNCWHLTDAGLAHLNPLIALQHLNLSKCDQLTNAGLAHLIPLTA 481
Query: 182 LKSLQIS-CSKVTDSGIAYLKGL 203
L+ L +S CS +TD G+A L+
Sbjct: 482 LQHLNLSGCSNLTDDGLARLRPF 504
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++LS VTD L HL LQ LD + C ++D GL HL L L L+ +
Sbjct: 406 TALQHLNLSWCGVTDDELAHLTPLEALQYLDLSNCWHLTDAGLAHLNPLIALQHLNLSKC 465
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI 144
+ +T G+ L L L+L C+ +
Sbjct: 466 DQLTNAGLAHLIPLTALQHLNLSGCSNL 493
>gi|290977067|ref|XP_002671260.1| predicted protein [Naegleria gruberi]
gi|284084827|gb|EFC38516.1| predicted protein [Naegleria gruberi]
Length = 378
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 115/395 (29%), Positives = 190/395 (48%), Gaps = 26/395 (6%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
NLQSLDF+ + LS+ N +T G+KA A L L K++ R
Sbjct: 3 NLQSLDFS----------------TTTNELSYNHNYIVT-NGLKAIAELKQLKKINFHRN 45
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
GL + +L L+I CN I K +S L LK L I+ + + D G Y+
Sbjct: 46 QIGQNGLQTISQFNQLLCLDIS-CNGIGIEGAKAVSELNQLKELDITANDIGDIGAKYIS 104
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
+++LT L + + + S+ L L LN++ + D+G + S + L L++
Sbjct: 105 QMKELTKLYVRYNDINSQGASSIGELHQLTKLNISYNNIGDEGMKVISGMKHLTKLSVHN 164
Query: 262 NEI---TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
N I + + + +K LTNL ++ IG EG+ ++ L L L++S Q+G+ G
Sbjct: 165 NHINVGSSQFISQMKQLTNL---SISENHIGIEGVETISQLSQLTRLKISSNQIGARGAI 221
Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
+S L L +++ I+D L+ L L L L D QI + G+ ++ L LT LD
Sbjct: 222 LISKLDKLTKLSIGSNRINDEGLKSLCRLKHLTKLKADFNQIGNEGVKSIIQLKQLTFLD 281
Query: 379 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 438
+ G I+ GA ++ K LR+L I + + G K I +L+ L +L++ +N L+D+ +
Sbjct: 282 IGGNNISHKGAQFINQLKQLRTLYISENQIGNKGAKLISELTQLRILHIRKN-ELSDEGV 340
Query: 439 ELISGLTGLVSLNV-SNSRITSAGLRHLKPLKNLR 472
+ I + L L++ N IT L LK+L+
Sbjct: 341 KSILLMKQLTELDLRENYDITVRMENQLSTLKSLK 375
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 119/257 (46%), Gaps = 1/257 (0%)
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L+ N + +G + +++ LK +N N+I L + L L++ GIG EG
Sbjct: 16 LSYNHNYIVTNGLKAIAELKQLKKINFHRNQIGQNGLQTISQFNQLLCLDISCNGIGIEG 75
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
++ L LK L+++ +G G +++S + L + + + I+ + L L
Sbjct: 76 AKAVSELNQLKELDITANDIGDIGAKYISQMKELTKLYVRYNDINSQGASSIGELHQLTK 135
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
LN+ I D G+ ++ + LT L + I + ++ K L +L I + G
Sbjct: 136 LNISYNNIGDEGMKVISGMKHLTKLSVHNNHINVGSSQFISQMKQLTNLSISENHIGIEG 195
Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 472
V+ I LS LT L +S N + + LIS L L L++ ++RI GL+ L LK+L
Sbjct: 196 VETISQLSQLTRLKISSN-QIGARGAILISKLDKLTKLSIGSNRINDEGLKSLCRLKHLT 254
Query: 473 SLTLESCKVTANDIKRL 489
L + ++ +K +
Sbjct: 255 KLKADFNQIGNEGVKSI 271
>gi|290985427|ref|XP_002675427.1| predicted protein [Naegleria gruberi]
gi|284089023|gb|EFC42683.1| predicted protein [Naegleria gruberi]
Length = 324
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 95/322 (29%), Positives = 159/322 (49%), Gaps = 26/322 (8%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SLNI N I D + K +S + L SL IS + + D G + +++LT LN+
Sbjct: 24 MKQLISLNI-GKNEIGDEEAKLISEMKQLTSLNISDNLIGDEGAKLISEMKQLTSLNICC 82
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ LS + L LN+ ++ D+G + S+ L LN+GF +I
Sbjct: 83 NRIGVEGAKYLSEMKQLISLNICENEIGDEGAKLISETRQLTSLNIGFTQI--------- 133
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
G EG ++ + L L++SD +G G + +S + L S+N+S
Sbjct: 134 ---------------GGEGAKFISEMKQLTSLDISDNLIGVEGAKFISEMKQLTSLNISD 178
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
I D + ++ + L SLN+ QI G+ ++ + LT LD+ +I D GA +
Sbjct: 179 NLIGDEGAKLISEMKQLTSLNISNNQIGGEGVKLISEMKQLTSLDISNNQIGDEGAKLIS 238
Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
K L SL I G + D G K + ++ L L++S N + D+ +LIS + L+SLN+
Sbjct: 239 EMKQLTSLNISGNRIGDEGAKSMSEMKQLKSLDISYN-QIGDEGTKLISEMKQLISLNIR 297
Query: 454 NSRITSAGLRHLKPLKNLRSLT 475
+RI G+++++ +K L SLT
Sbjct: 298 ANRIGDEGVKYIREMKQLTSLT 319
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 126/252 (50%), Gaps = 1/252 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SLNI CN I K LS + L SL I +++ D G + ++LT LN+
Sbjct: 72 MKQLTSLNI-CCNRIGVEGAKYLSEMKQLISLNICENEIGDEGAKLISETRQLTSLNIGF 130
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ +S + L L+++ + +G + S++ L LN+ N I DE +
Sbjct: 131 TQIGGEGAKFISEMKQLTSLDISDNLIGVEGAKFISEMKQLTSLNISDNLIGDEGAKLIS 190
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
+ L SLN+ + IG EG+ ++ + L L++S+ Q+G G + +S + L S+N+S
Sbjct: 191 EMKQLTSLNISNNQIGGEGVKLISEMKQLTSLDISNNQIGDEGAKLISEMKQLTSLNISG 250
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
I D + ++ + LKSL++ QI D G ++ + L L++ RI D G Y+R
Sbjct: 251 NRIGDEGAKSMSEMKQLKSLDISYNQIGDEGTKLISEMKQLISLNIRANRIGDEGVKYIR 310
Query: 394 NFKNLRSLEICG 405
K L SL G
Sbjct: 311 EMKQLTSLTYKG 322
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 137/274 (50%), Gaps = 2/274 (0%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+++LT L++ G + +S + L LN+ + ++ D+ + S++ L LN+ N
Sbjct: 1 MKQLTSLDISGNGIGDEA-KLISEMKQLISLNIGKNEIGDEEAKLISEMKQLTSLNISDN 59
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
I DE + + L SLN+ IG EG L+ + L L + + ++G G + +S
Sbjct: 60 LIGDEGAKLISEMKQLTSLNICCNRIGVEGAKYLSEMKQLISLNICENEIGDEGAKLISE 119
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
L S+N+ FT I + ++ + L SL++ I G ++ + LT L++
Sbjct: 120 TRQLTSLNIGFTQIGGEGAKFISEMKQLTSLDISDNLIGVEGAKFISEMKQLTSLNISDN 179
Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
I D GA + K L SL I + GVK I ++ LT L++S N + D+ +LIS
Sbjct: 180 LIGDEGAKLISEMKQLTSLNISNNQIGGEGVKLISEMKQLTSLDISNN-QIGDEGAKLIS 238
Query: 443 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
+ L SLN+S +RI G + + +K L+SL +
Sbjct: 239 EMKQLTSLNISGNRIGDEGAKSMSEMKQLKSLDI 272
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 132/259 (50%), Gaps = 7/259 (2%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
D + S++ L LN+G NEI DE + + L SLN+ IGDEG ++ + L
Sbjct: 16 DEAKLISEMKQLISLNIGKNEIGDEEAKLISEMKQLTSLNISDNLIGDEGAKLISEMKQL 75
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L + ++G G ++LS + L S+N+ I D + ++ L SLN+ QI
Sbjct: 76 TSLNICCNRIGVEGAKYLSEMKQLISLNICENEIGDEGAKLISETRQLTSLNIGFTQIGG 135
Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
G ++ + LT LD+ I GA ++ K L SL I + D G K I ++ L
Sbjct: 136 EGAKFISEMKQLTSLDISDNLIGVEGAKFISEMKQLTSLNISDNLIGDEGAKLISEMKQL 195
Query: 423 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV- 481
T LN+S N + + ++LIS + L SL++SN++I G + + +K L SL + ++
Sbjct: 196 TSLNISNN-QIGGEGVKLISEMKQLTSLDISNNQIGDEGAKLISEMKQLTSLNISGNRIG 254
Query: 482 -----TANDIKRLQSRDLP 495
+ +++K+L+S D+
Sbjct: 255 DEGAKSMSEMKQLKSLDIS 273
>gi|406831735|ref|ZP_11091329.1| hypothetical protein SpalD1_08854 [Schlesneria paludicola DSM
18645]
Length = 422
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 117/397 (29%), Positives = 188/397 (47%), Gaps = 33/397 (8%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
+E D A + + P N+K + ++ S +L S+D+S +T+ GL L L+
Sbjct: 45 VERSSDRATVRVSFNEGPRFNEKHLHLLKSL-PNLTSLDVSAIVITEDGLRELGQLKFLR 103
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL--DLERCT 142
L + I+D GL L L +LT L+ ++T +G+K F + +++ DLE
Sbjct: 104 RLVVD-GRSITDEGLMELVDLRSLTELTIS-ATSVTDEGLKQFQSFLPQLRILSDLESVR 161
Query: 143 RI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
R+ GG + + ++ +++ D D++ L L +L+SL + + +TD + +
Sbjct: 162 RLAGFGGEIE-RSDGRVIRISLHNKPQFGDGDIESLMSLRHLESLDLGGTSITDGALLTV 220
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
LQKL L L +T L +L L L L+L+R ++ D G ++ K+ L L L
Sbjct: 221 GRLQKLIQLQLPSTRITDRGLKALRNLKQLSILDLSRTRIGDVGLDEIKKL-PLTSLMLH 279
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
++TD L+ L+ L ++ L L C I D GLV L NL L L+ T+
Sbjct: 280 DTQVTDFGLLALQDLKEVQFLGLYKCAITDTGLVTLGRFQNLSELCLNSTR--------- 330
Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
I+DG LR + L L+ L L QITD GL L L L L L
Sbjct: 331 ---------------ITDGGLRNVGQLRKLRILQLGDSQITDAGLLELRHLNNLVGLVLR 375
Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
G R+TD L+ ++NL +++ G T+AGV +K
Sbjct: 376 GTRVTDDSVNTLKRYQNLVHIDLRQTGFTEAGVTELK 412
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 116/378 (30%), Positives = 172/378 (45%), Gaps = 13/378 (3%)
Query: 99 LEHLRGLSNLTS------LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
LE L G+ +S +SF + + L NL LD+ GL L
Sbjct: 38 LERLGGIVERSSDRATVRVSFNEGPRFNEKHLHLLKSLPNLTSLDVSAIVITEDGLRELG 97
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG-LQKLTLL-N 210
L L L + ITD + L L +L L IS + VTD G+ + L +L +L +
Sbjct: 98 QLKFLRRLVVDG-RSITDEGLMELVDLRSLTELTISATSVTDEGLKQFQSFLPQLRILSD 156
Query: 211 LEGCPVTAACLDSLS-ALGSLFYLNL-NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
LE A + + G + ++L N+ Q D E + L+ L+LG ITD
Sbjct: 157 LESVRRLAGFGGEIERSDGRVIRISLHNKPQFGDGDIESLMSLRHLESLDLGGTSITDGA 216
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
L+ + L L L L S I D GL L L L L+LS T++G GL + L L S
Sbjct: 217 LLTVGRLQKLIQLQLPSTRITDRGLKALRNLKQLSILDLSRTRIGDVGLDEIKKLP-LTS 275
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
+ L T ++D L L L ++ L L ITDTGL L L+ L L RITD G
Sbjct: 276 LMLHDTQVTDFGLLALQDLKEVQFLGLYKCAITDTGLVTLGRFQNLSELCLNSTRITDGG 335
Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
+ + LR L++ +TDAG+ ++ L++L L L + +TD ++ + LV
Sbjct: 336 LRNVGQLRKLRILQLGDSQITDAGLLELRHLNNLVGLVL-RGTRVTDDSVNTLKRYQNLV 394
Query: 449 SLNVSNSRITSAGLRHLK 466
+++ + T AG+ LK
Sbjct: 395 HIDLRQTGFTEAGVTELK 412
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 156/347 (44%), Gaps = 57/347 (16%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L L NL SL +S +T+ G+ L L+ L L ++G +T L L L SL L +
Sbjct: 72 LKSLPNLTSLDVSAIVITEDGLRELGQLKFLRRLVVDGRSITDEGLMELVDLRSLTELTI 131
Query: 236 NRCQLSDDGCEKF-SKIGSLKVLN--------LGFN-------------------EITDE 267
+ ++D+G ++F S + L++L+ GF + D
Sbjct: 132 SATSVTDEGLKQFQSFLPQLRILSDLESVRRLAGFGGEIERSDGRVIRISLHNKPQFGDG 191
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
+ L L +LESL+L I D L+ + L L L+L T++ GL+ L L L
Sbjct: 192 DIESLMSLRHLESLDLGGTSITDGALLTVGRLQKLIQLQLPSTRITDRGLKALRNLKQLS 251
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
++LS T I D L ++ L L SL L Q+TD GL AL L + L L+ ITD+
Sbjct: 252 ILDLSRTRIGDVGLDEIKKLP-LTSLMLHDTQVTDFGLLALQDLKEVQFLGLYKCAITDT 310
Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
G L F+NL L + +TD G++++ L L +L L
Sbjct: 311 GLVTLGRFQNLSELCLNSTRITDGGLRNVGQLRKLRILQLG------------------- 351
Query: 448 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT---ANDIKRLQS 491
+S+IT AGL L+ L NL L L +VT N +KR Q+
Sbjct: 352 ------DSQITDAGLLELRHLNNLVGLVLRGTRVTDDSVNTLKRYQN 392
>gi|188586163|ref|YP_001917708.1| hypothetical protein Nther_1542 [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350850|gb|ACB85120.1| Leucine-rich repeat, ribonuclease inhibitor subtype [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 344
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 167/318 (52%), Gaps = 18/318 (5%)
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
NLK +K E L ++ IT+ +++ L+ LT +S + GI Y LQ+L+L
Sbjct: 38 NLKAAIK-EELGVE---QITEENIEDLTTLT------VSGEDINIKGIEYAINLQELSL- 86
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
+G + +++L+ + +L LNLN +++D+G E+ ++ +LK ++L ++TDE
Sbjct: 87 --QGTKI--EDVNTLAEVDNLEELNLNYTEITDEGIEQLAEADNLKQISLTHTDVTDEGT 142
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
L +LE L L + D+GL +L NLK L+L T V G HL+ NLE +
Sbjct: 143 KLLAESESLERLILSGTEVTDDGLEHLIEADNLKKLDLHGTDVTDDGAEHLAETDNLEKL 202
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
+L T ++D + +L + +L+ L L ++TD G+ L L L L G IT+ G
Sbjct: 203 SLVDTEVTDEGIEQLVKVDNLEVLILGWTEVTDNGVEYLAEADNLEMLHLDGTEITNEGV 262
Query: 390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 449
YL NL L++ +TD V + + SL L+L + ++TD+ ++ ++ L
Sbjct: 263 KYLAEADNLEELDLKQTKVTD--VNALAETDSLEELDL-WDTDVTDEGVKELAEADSLKV 319
Query: 450 LNVSNSRITSAGLRHLKP 467
+N+ + +T+ G+ HL+
Sbjct: 320 VNLDETEVTNEGVEHLED 337
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 156/301 (51%), Gaps = 10/301 (3%)
Query: 123 GMKAFAGLINLVKLDLERCTR--IHGGLVNLKGL---MKLESLNIKWCNCITDSDMKPLS 177
+K G+ + + ++E T + G +N+KG+ + L+ L+++ D+ L+
Sbjct: 42 AIKEELGVEQITEENIEDLTTLTVSGEDINIKGIEYAINLQELSLQGTKI---EDVNTLA 98
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
+ NL+ L ++ +++TD GI L L ++L VT L+ SL L L+
Sbjct: 99 EVDNLEELNLNYTEITDEGIEQLAEADNLKQISLTHTDVTDEGTKLLAESESLERLILSG 158
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+++DDG E + +LK L+L ++TD+ HL NLE L+L + DEG+ L
Sbjct: 159 TEVTDDGLEHLIEADNLKKLDLHGTDVTDDGAEHLAETDNLEKLSLVDTEVTDEGIEQLV 218
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
+ NL+ L L T+V +G+ +L+ NLE ++L T I++ ++ LA +L+ L+L
Sbjct: 219 KVDNLEVLILGWTEVTDNGVEYLAEADNLEMLHLDGTEITNEGVKYLAEADNLEELDLKQ 278
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
++TD AL L LDL+ +TD G L +L+ + + +T+ GV+H++
Sbjct: 279 TKVTDVN--ALAETDSLEELDLWDTDVTDEGVKELAEADSLKVVNLDETEVTNEGVEHLE 336
Query: 418 D 418
D
Sbjct: 337 D 337
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 128/241 (53%), Gaps = 7/241 (2%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L++L L Y + D+ ++ +A + +L + L+ +DVTD G L + +L+ L +
Sbjct: 103 LEELNLN-YTEITDEGIEQLA-EADNLKQISLTHTDVTDEGTKLLAESESLERLILSGT- 159
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+++D GLEHL NL L + +T G + A NL KL L G+ L
Sbjct: 160 EVTDDGLEHLIEADNLKKLDLHGTD-VTDDGAEHLAETDNLEKLSLVDTEVTDEGIEQLV 218
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+ LE L + W +TD+ ++ L+ NL+ L + +++T+ G+ YL L L+L+
Sbjct: 219 KVDNLEVLILGWTE-VTDNGVEYLAEADNLEMLHLDGTEITNEGVKYLAEADNLEELDLK 277
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
VT +++L+ SL L+L ++D+G ++ ++ SLKV+NL E+T+E + HL
Sbjct: 278 QTKVTD--VNALAETDSLEELDLWDTDVTDEGVKELAEADSLKVVNLDETEVTNEGVEHL 335
Query: 273 K 273
+
Sbjct: 336 E 336
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 27/169 (15%)
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
NL+ ++L T I D + LA + +L+ LNL+ +ITD G+ L L + L +
Sbjct: 80 NLQELSLQGTKIED--VNTLAEVDNLEELNLNYTEITDEGIEQLAEADNLKQISLTHTDV 137
Query: 385 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 444
TD G L ++L L + G +TD G++H+ + +L L+L
Sbjct: 138 TDEGTKLLAESESLERLILSGTEVTDDGLEHLIEADNLKKLDLH---------------- 181
Query: 445 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 493
+ +T G HL NL L+L +VT I++L D
Sbjct: 182 ---------GTDVTDDGAEHLAETDNLEKLSLVDTEVTDEGIEQLVKVD 221
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 18/152 (11%)
Query: 357 ARQITDTGLAALTSLT---------------GLTHLDLFGARITDSGAAYLRNFKNLRSL 401
QIT+ + LT+LT L L L G +I D L NL L
Sbjct: 49 VEQITEENIEDLTTLTVSGEDINIKGIEYAINLQELSLQGTKIEDVNT--LAEVDNLEEL 106
Query: 402 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
+ +TD G++ + + +L ++L+ + ++TD+ +L++ L L +S + +T G
Sbjct: 107 NLNYTEITDEGIEQLAEADNLKQISLT-HTDVTDEGTKLLAESESLERLILSGTEVTDDG 165
Query: 462 LRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 493
L HL NL+ L L VT + + L D
Sbjct: 166 LEHLIEADNLKKLDLHGTDVTDDGAEHLAETD 197
>gi|290974552|ref|XP_002670009.1| predicted protein [Naegleria gruberi]
gi|284083563|gb|EFC37265.1| predicted protein [Naegleria gruberi]
Length = 445
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 150/305 (49%), Gaps = 1/305 (0%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D K L L L L I + + + G Y+ +Q L +LN+ G + + +S + L
Sbjct: 55 DCKKLGLLKQLTQLDIDGNNIDEEGAKYISEMQYLAILNMLGNNIGNEGVKYISGMKQLT 114
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
+LN++ + DG + ++ L LN+G N I DE + +T L L + CGI E
Sbjct: 115 HLNVSENNIGLDGVKYIVEMKQLTHLNIGQNSIGDEGAKLIGEMTQLLDLCIFYCGISSE 174
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
G+ +++ L L L +S + +++SG+ L + + I D + L + L
Sbjct: 175 GIKHISKLDKLTDLNISSNMLYDDSTKYISGMNQLTYLRIHDNNIGDEGAKFLGKMKQLT 234
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
+N+ ++T G+ LT L LT +D+ I D+GA Y+ K L +L++ + +
Sbjct: 235 GINIWRNELTAEGVKFLTGLDKLTEIDISSNNIGDNGAKYISEMKQLTNLDVSDNNIGEE 294
Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 471
G K+I ++ LT+L L +N N+ + + IS L L L++S + I G +++ + L
Sbjct: 295 GAKYIGNMKQLTILTLWKN-NIRGEGAKYISKLEKLTELDISENHIDEKGAKYISEMSQL 353
Query: 472 RSLTL 476
+L +
Sbjct: 354 NALDI 358
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 156/309 (50%), Gaps = 1/309 (0%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N I + K +S + L L + + + + G+ Y+ G+++LT LN+ + + +
Sbjct: 73 NNIDEEGAKYISEMQYLAILNMLGNNIGNEGVKYISGMKQLTHLNVSENNIGLDGVKYIV 132
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
+ L +LN+ + + D+G + ++ L L + + I+ E + H+ L L LN+ S
Sbjct: 133 EMKQLTHLNIGQNSIGDEGAKLIGEMTQLLDLCIFYCGISSEGIKHISKLDKLTDLNISS 192
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
+ D+ ++G+ L L + D +G G + L + L IN+ ++ ++ L
Sbjct: 193 NMLYDDSTKYISGMNQLTYLRIHDNNIGDEGAKFLGKMKQLTGINIWRNELTAEGVKFLT 252
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
GL L +++ + I D G ++ + LT+LD+ I + GA Y+ N K L L +
Sbjct: 253 GLDKLTEIDISSNNIGDNGAKYISEMKQLTNLDVSDNNIGEEGAKYIGNMKQLTILTLWK 312
Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
+ G K+I L LT L++S+N ++ +K + IS ++ L +L++S + I + G +++
Sbjct: 313 NNIRGEGAKYISKLEKLTELDISEN-HIDEKGAKYISEMSQLNALDISVNIIGNQGAKYI 371
Query: 466 KPLKNLRSL 474
K +K L L
Sbjct: 372 KEMKQLTDL 380
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 96/419 (22%), Positives = 179/419 (42%), Gaps = 51/419 (12%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L +D+ G+++ + G ++ + L L+ I + G++++ G+ LT L+ NN
Sbjct: 64 QLTQLDIDGNNIDEEGAKYISEMQYLAILNM-LGNNIGNEGVKYISGMKQLTHLNVSENN 122
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I G+K + L L++ + N I D K +
Sbjct: 123 -IGLDGVKYIVEMKQLTHLNIGQ-------------------------NSIGDEGAKLIG 156
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
+T L L I ++ GI ++ L KLT LN+ + +S + L YL ++
Sbjct: 157 EMTQLLDLCIFYCGISSEGIKHISKLDKLTDLNISSNMLYDDSTKYISGMNQLTYLRIHD 216
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+ D+G + K+ L +N+ NE+T E + L GL L +++ S IGD G ++
Sbjct: 217 NNIGDEGAKFLGKMKQLTGINIWRNELTAEGVKFLTGLDKLTEIDISSNNIGDNGAKYIS 276
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
+ L L++SD +G G +++ G++++L L+ K+
Sbjct: 277 EMKQLTNLDVSDNNIGEEGAKYI------------------GNMKQLTILTLWKN----- 313
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
I G ++ L LT LD+ I + GA Y+ L +L+I + + G K+IK
Sbjct: 314 -NIRGEGAKYISKLEKLTELDISENHIDEKGAKYISEMSQLNALDISVNIIGNQGAKYIK 372
Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
++ LT L + N + + L +N+++++ L + K L+ L L
Sbjct: 373 EMKQLTDLLIWDNNIIEQEEHPKEIKEVSTTPLAETNTKLSTPSLDNTKGLRKLIGLAF 431
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 81/177 (45%), Gaps = 35/177 (19%)
Query: 38 LGQYPGVNDKWMDVIASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNF 90
+ Q G+N W + + ++G L+ +D+S +++ D+G ++ + L +LD +
Sbjct: 230 MKQLTGIN-IWRNELTAEGVKFLTGLDKLTEIDISSNNIGDNGAKYISEMKQLTNLDVSD 288
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
I + G +++ + LT L+ +NN I +G K + L L +LD+
Sbjct: 289 N-NIGEEGAKYIGNMKQLTILTLWKNN-IRGEGAKYISKLEKLTELDISE---------- 336
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
N I + K +S ++ L +L IS + + + G Y+K +++LT
Sbjct: 337 ---------------NHIDEKGAKYISEMSQLNALDISVNIIGNQGAKYIKEMKQLT 378
>gi|290980071|ref|XP_002672756.1| predicted protein [Naegleria gruberi]
gi|284086335|gb|EFC40012.1| predicted protein [Naegleria gruberi]
Length = 385
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 162/316 (51%), Gaps = 1/316 (0%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N I D K +SG+ +L SL I +++ G + G++ L L++ + +S
Sbjct: 28 NQIGDEGSKFISGMKHLTSLNIDRNQIGVEGAKLISGMKSLISLSIGDNQIGVEGAKLIS 87
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
+ L L++NR Q+ +G + S++ L LN+ +N+I E + G+ L SL++
Sbjct: 88 GMKHLTSLDINRNQIGVEGAKSISRMKQLTSLNIYYNQIGAEGAKSISGMKQLTSLDIGG 147
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
IG E ++ + L L++ + Q+G G + +SG+ L S+N+ F I + ++
Sbjct: 148 NQIGVEESKYISEMKQLTSLDIYNNQIGVEGAKSISGMKQLTSLNIGFNRIGVEGSKLIS 207
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
+ L SLN+ + +I G + + LT L+++ I D G+ Y+ K L SL+I
Sbjct: 208 EMKQLTSLNIGSNEIGVEGSKFIPEMKHLTSLNIYYNEIGDEGSKYISEMKQLTSLDIYY 267
Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
+ G K+I ++ LT L +S N + + + IS + L SL++++++I G + +
Sbjct: 268 NEIGVEGAKYISEMKQLTSLGISDN-QIGVEGAKFISEMKLLTSLDIADNQIGDEGSKFI 326
Query: 466 KPLKNLRSLTLESCKV 481
+K+L SL + S ++
Sbjct: 327 SEMKSLTSLNVNSNQI 342
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 173/355 (48%), Gaps = 5/355 (1%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
+ + +L SLD QI D G + + G+ +LTSL+ RN I +G K +G+ +L+ L
Sbjct: 14 ISEMKHLTSLDIADN-QIGDEGSKFISGMKHLTSLNIDRNQ-IGVEGAKLISGMKSLISL 71
Query: 137 DL-ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
+ + + G + + G+ L SL+I N I K +S + L SL I +++
Sbjct: 72 SIGDNQIGVEGAKL-ISGMKHLTSLDINR-NQIGVEGAKSISRMKQLTSLNIYYNQIGAE 129
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G + G+++LT L++ G + +S + L L++ Q+ +G + S + L
Sbjct: 130 GAKSISGMKQLTSLDIGGNQIGVEESKYISEMKQLTSLDIYNNQIGVEGAKSISGMKQLT 189
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
LN+GFN I E + + L SLN+ S IG EG + + +L L + ++G
Sbjct: 190 SLNIGFNRIGVEGSKLISEMKQLTSLNIGSNEIGVEGSKFIPEMKHLTSLNIYYNEIGDE 249
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
G +++S + L S+++ + I + ++ + L SL + QI G ++ + LT
Sbjct: 250 GSKYISEMKQLTSLDIYYNEIGVEGAKYISEMKQLTSLGISDNQIGVEGAKFISEMKLLT 309
Query: 376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
LD+ +I D G+ ++ K+L SL + + D G K I + LT L + N
Sbjct: 310 SLDIADNQIGDEGSKFISEMKSLTSLNVNSNQIGDEGAKLISGMKQLTSLKIYYN 364
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 93/358 (25%), Positives = 173/358 (48%), Gaps = 27/358 (7%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D++ + + D G + +L SL+ + QI G + + G+ +L SLS
Sbjct: 15 SEMKHLTSLDIADNQIGDEGSKFISGMKHLTSLNIDRN-QIGVEGAKLISGMKSLISLSI 73
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+N I +G K +G+ +L LD+ R G ++ + +L SLNI + N I
Sbjct: 74 G-DNQIGVEGAKLISGMKHLTSLDINRNQIGVEGAKSISRMKQLTSLNI-YYNQIGAEGA 131
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +SG+ L SL I +++ Y+ +++LT L++ + S+S + L L
Sbjct: 132 KSISGMKQLTSLDIGGNQIGVEESKYISEMKQLTSLDIYNNQIGVEGAKSISGMKQLTSL 191
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLG------------------------FNEITDECL 269
N+ ++ +G + S++ L LN+G +NEI DE
Sbjct: 192 NIGFNRIGVEGSKLISEMKQLTSLNIGSNEIGVEGSKFIPEMKHLTSLNIYYNEIGDEGS 251
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
++ + L SL++ IG EG ++ + L L +SD Q+G G + +S + L S+
Sbjct: 252 KYISEMKQLTSLDIYYNEIGVEGAKYISEMKQLTSLGISDNQIGVEGAKFISEMKLLTSL 311
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
+++ I D + ++ + SL SLN+++ QI D G ++ + LT L ++ +I ++
Sbjct: 312 DIADNQIGDEGSKFISEMKSLTSLNVNSNQIGDEGAKLISGMKQLTSLKIYYNQIGET 369
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 157/325 (48%), Gaps = 17/325 (5%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL+S+ + + + G + +L SLD N QI G + + + LTSL+ N
Sbjct: 67 SLISLSIGDNQIGVEGAKLISGMKHLTSLDINRN-QIGVEGAKSISRMKQLTSLNIYYNQ 125
Query: 118 AITAQGMKAFAGLINLVKLDL-------ERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
I A+G K+ +G+ L LD+ E I + +L SL+I + N I
Sbjct: 126 -IGAEGAKSISGMKQLTSLDIGGNQIGVEESKYISE-------MKQLTSLDI-YNNQIGV 176
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
K +SG+ L SL I +++ G + +++LT LN+ + + + L
Sbjct: 177 EGAKSISGMKQLTSLNIGFNRIGVEGSKLISEMKQLTSLNIGSNEIGVEGSKFIPEMKHL 236
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
LN+ ++ D+G + S++ L L++ +NEI E ++ + L SL + IG
Sbjct: 237 TSLNIYYNEIGDEGSKYISEMKQLTSLDIYYNEIGVEGAKYISEMKQLTSLGISDNQIGV 296
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
EG ++ + L L+++D Q+G G + +S + +L S+N++ I D + ++G+ L
Sbjct: 297 EGAKFISEMKLLTSLDIADNQIGDEGSKFISEMKSLTSLNVNSNQIGDEGAKLISGMKQL 356
Query: 351 KSLNLDARQITDTGLAALTSLTGLT 375
SL + QI +T L ++ S+T T
Sbjct: 357 TSLKIYYNQIGETLLMSVISITAET 381
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
++ K+L SL+I + D G K I + LT LN+ +N + + +LISG+ L+SL
Sbjct: 13 FISEMKHLTSLDIADNQIGDEGSKFISGMKHLTSLNIDRN-QIGVEGAKLISGMKSLISL 71
Query: 451 NVSNSRITSAGLRHLKPLKNLRSLTLESCKV---TANDIKRLQ 490
++ +++I G + + +K+L SL + ++ A I R++
Sbjct: 72 SIGDNQIGVEGAKLISGMKHLTSLDINRNQIGVEGAKSISRMK 114
>gi|290991306|ref|XP_002678276.1| predicted protein [Naegleria gruberi]
gi|284091888|gb|EFC45532.1| predicted protein [Naegleria gruberi]
Length = 445
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 95/348 (27%), Positives = 166/348 (47%), Gaps = 26/348 (7%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SLNI N I D K + + L SL I +++ D GI + +++LTLL++ G
Sbjct: 100 MKQLTSLNIS-NNQINDETAKSIIEMKRLTSLDIGGNQIGDEGIKLISEMKQLTLLDISG 158
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ + +S + L LN+ ++ G + ++ L L++ +NEI DE +
Sbjct: 159 NSIGDKGVKPISKMKQLTSLNIYNNEIGVAGSKFIIEMKQLTSLDISYNEIGDEGAKSIS 218
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN--- 330
L L SL + IGDEG+ ++ + L L++S +G G++ +S + L S+N
Sbjct: 219 ELKQLTSLTVSGNQIGDEGIKLISEMKQLTLLDISGNSIGDKGVKPISKMKQLTSLNIYN 278
Query: 331 ---------------------LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 369
+S+ I D + ++ + L SL + QI D G+ ++
Sbjct: 279 NEIGVAGSKFIIEMKQLTSLDISYNEIGDEGAKSISEMKQLTSLTISGNQIGDEGIKLIS 338
Query: 370 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 429
+ LT LD+ G + D G + K L SL I + AG K I ++ LT L++S
Sbjct: 339 EMKQLTLLDISGKSVGDKGVKSISKMKQLTSLTIYTNEIGVAGAKFISEMKQLTSLDISY 398
Query: 430 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 477
N + D+ + IS L L L++S + I G + + +K L+SL ++
Sbjct: 399 N-EIGDEGAKSISELKQLTLLDISGNGIGDEGSKFIIGMKQLKSLDIQ 445
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 90/306 (29%), Positives = 158/306 (51%), Gaps = 7/306 (2%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL IS +++ D + +++LT L++ G + + +S + L L
Sbjct: 95 KFISEMKQLTSLNISNNQINDETAKSIIEMKRLTSLDIGGNQIGDEGIKLISEMKQLTLL 154
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI---TDECLVHLKGLTNLESLNLDSCGIGD 290
+++ + D G + SK+ L LN+ NEI + ++ +K LT SL++ IGD
Sbjct: 155 DISGNSIGDKGVKPISKMKQLTSLNIYNNEIGVAGSKFIIEMKQLT---SLDISYNEIGD 211
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
EG +++ L L L +S Q+G G++ +S + L +++S I D ++ ++ + L
Sbjct: 212 EGAKSISELKQLTSLTVSGNQIGDEGIKLISEMKQLTLLDISGNSIGDKGVKPISKMKQL 271
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
SLN+ +I G + + LT LD+ I D GA + K L SL I G + D
Sbjct: 272 TSLNIYNNEIGVAGSKFIIEMKQLTSLDISYNEIGDEGAKSISEMKQLTSLTISGNQIGD 331
Query: 411 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 470
G+K I ++ LTLL++S ++ DK ++ IS + L SL + + I AG + + +K
Sbjct: 332 EGIKLISEMKQLTLLDIS-GKSVGDKGVKSISKMKQLTSLTIYTNEIGVAGAKFISEMKQ 390
Query: 471 LRSLTL 476
L SL +
Sbjct: 391 LTSLDI 396
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 162/345 (46%), Gaps = 27/345 (7%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+D+ G+ + D G+ + + L LD + I D G++ + + LTSL+ NN
Sbjct: 127 LTSLDIGGNQIGDEGIKLISEMKQLTLLDISGN-SIGDKGVKPISKMKQLTSLNI-YNNE 184
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I G K + L LD+ N I D K +S
Sbjct: 185 IGVAGSKFIIEMKQLTSLDIS-------------------------YNEIGDEGAKSISE 219
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L L SL +S +++ D GI + +++LTLL++ G + + +S + L LN+
Sbjct: 220 LKQLTSLTVSGNQIGDEGIKLISEMKQLTLLDISGNSIGDKGVKPISKMKQLTSLNIYNN 279
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
++ G + ++ L L++ +NEI DE + + L SL + IGDEG+ ++
Sbjct: 280 EIGVAGSKFIIEMKQLTSLDISYNEIGDEGAKSISEMKQLTSLTISGNQIGDEGIKLISE 339
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
+ L L++S VG G++ +S + L S+ + I + ++ + L SL++
Sbjct: 340 MKQLTLLDISGKSVGDKGVKSISKMKQLTSLTIYTNEIGVAGAKFISEMKQLTSLDISYN 399
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
+I D G +++ L LT LD+ G I D G+ ++ K L+SL+I
Sbjct: 400 EIGDEGAKSISELKQLTLLDISGNGIGDEGSKFIIGMKQLKSLDI 444
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 155/303 (51%), Gaps = 7/303 (2%)
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
++ +++LT LN+ + S+ + L L++ Q+ D+G + S++ L +L+
Sbjct: 96 FISEMKQLTSLNISNNQINDETAKSIIEMKRLTSLDIGGNQIGDEGIKLISEMKQLTLLD 155
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
+ N I D+ + + + L SLN+ + IG G + + L L++S ++G G +
Sbjct: 156 ISGNSIGDKGVKPISKMKQLTSLNIYNNEIGVAGSKFIIEMKQLTSLDISYNEIGDEGAK 215
Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
+S L L S+ +S I D ++ ++ + L L++ I D G+ ++ + LT L+
Sbjct: 216 SISELKQLTSLTVSGNQIGDEGIKLISEMKQLTLLDISGNSIGDKGVKPISKMKQLTSLN 275
Query: 379 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 438
++ I +G+ ++ K L SL+I + D G K I ++ LT L +S N + D+ +
Sbjct: 276 IYNNEIGVAGSKFIIEMKQLTSLDISYNEIGDEGAKSISEMKQLTSLTISGN-QIGDEGI 334
Query: 439 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA------NDIKRLQSR 492
+LIS + L L++S + G++ + +K L SLT+ + ++ +++K+L S
Sbjct: 335 KLISEMKQLTLLDISGKSVGDKGVKSISKMKQLTSLTIYTNEIGVAGAKFISEMKQLTSL 394
Query: 493 DLP 495
D+
Sbjct: 395 DIS 397
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 143/281 (50%), Gaps = 2/281 (0%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+S + L LN++ Q++D+ + ++ L L++G N+I DE + + + L L++
Sbjct: 97 ISEMKQLTSLNISNNQINDETAKSIIEMKRLTSLDIGGNQIGDEGIKLISEMKQLTLLDI 156
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
IGD+G+ ++ + L L + + ++G +G + + + L S+++S+ I D +
Sbjct: 157 SGNSIGDKGVKPISKMKQLTSLNIYNNEIGVAGSKFIIEMKQLTSLDISYNEIGDEGAKS 216
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
++ L L SL + QI D G+ ++ + LT LD+ G I D G + K L SL I
Sbjct: 217 ISELKQLTSLTVSGNQIGDEGIKLISEMKQLTLLDISGNSIGDKGVKPISKMKQLTSLNI 276
Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
+ AG K I ++ LT L++S N + D+ + IS + L SL +S ++I G++
Sbjct: 277 YNNEIGVAGSKFIIEMKQLTSLDISYN-EIGDEGAKSISEMKQLTSLTISGNQIGDEGIK 335
Query: 464 HLKPLKNLRSLTLESCKVTANDIKRL-QSRDLPNLVSFRPE 503
+ +K L L + V +K + + + L +L + E
Sbjct: 336 LISEMKQLTLLDISGKSVGDKGVKSISKMKQLTSLTIYTNE 376
>gi|168700559|ref|ZP_02732836.1| hypothetical protein GobsU_13597 [Gemmata obscuriglobus UQM 2246]
Length = 446
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 99/365 (27%), Positives = 171/365 (46%), Gaps = 9/365 (2%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+T G A G + + +ER + L LKGL + + + +TD+D+ ++G
Sbjct: 70 VTVHGPGADGGCV----VRVERTADLAPALATLKGLKCVTEVTFA-SDRLTDTDLACIAG 124
Query: 179 LTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
+L+S + C +VT +G L L +L ++L G PVT L + +L + L R
Sbjct: 125 FEHLRSFGLRDCGRVTGAGFGVLAQLPRLKWVSLVG-PVTDEAGPHLGRIKTLETVVLYR 183
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+ +D G ++ + + +L +N+ +T G + L ++ GL ++
Sbjct: 184 TKFTDAGLKELAALPALGSVNVTATPVTGTAFAE-PGWSRLREIDATQTAFNAAGLEAVS 242
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
L L L L T V SGL+HL+ L+ ++L+ T ++D + LAG+ +L+ LNL+
Sbjct: 243 ALPVLGTLTLDATAVTDSGLKHLARARALQELSLADTPVADTGVAALAGVQTLRVLNLER 302
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
+T A L L+L R TD+ ++L L +L + G +TDAG+ +
Sbjct: 303 TGVTGAAFATFPVPAELRKLNLAETRFTDASGSHLARLPALTNLSLSGCDVTDAGLARLA 362
Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 477
DL L L+L+ D E+ L L ++ +++T AGL+ LR L +
Sbjct: 363 DLKKLANLDLT-GTKAGDGAAEVAGTLAELEVVSFRGTQLTDAGLKAAAHGARLRFLYVR 421
Query: 478 SCKVT 482
KVT
Sbjct: 422 GSKVT 426
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 145/333 (43%), Gaps = 11/333 (3%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKL 157
L L+GL +T ++F ++ +T + AG +L L C R+ G G L L +L
Sbjct: 95 LATLKGLKCVTEVTFA-SDRLTDTDLACIAGFEHLRSFGLRDCGRVTGAGFGVLAQLPRL 153
Query: 158 ESLNIKWCN---CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
KW + +TD L + L+++ + +K TD+G+ L L L +N+
Sbjct: 154 -----KWVSLVGPVTDEAGPHLGRIKTLETVVLYRTKFTDAGLKELAALPALGSVNVTAT 208
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
PVT + L ++ + + G E S + L L L +TD L HL
Sbjct: 209 PVTGTAF-AEPGWSRLREIDATQTAFNAAGLEAVSALPVLGTLTLDATAVTDSGLKHLAR 267
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
L+ L+L + D G+ L G+ L+ L L T V + L +NL+ T
Sbjct: 268 ARALQELSLADTPVADTGVAALAGVQTLRVLNLERTGVTGAAFATFPVPAELRKLNLAET 327
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
+D S LA L +L +L+L +TD GLA L L L +LDL G + D A
Sbjct: 328 RFTDASGSHLARLPALTNLSLSGCDVTDAGLARLADLKKLANLDLTGTKAGDGAAEVAGT 387
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
L + G LTDAG+K + L L +
Sbjct: 388 LAELEVVSFRGTQLTDAGLKAAAHGARLRFLYV 420
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 126/300 (42%), Gaps = 15/300 (5%)
Query: 77 LKDCSNLQSLDFNFCIQ------------ISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
L+DC + F Q ++D HL + L ++ R T G+
Sbjct: 133 LRDCGRVTGAGFGVLAQLPRLKWVSLVGPVTDEAGPHLGRIKTLETVVLYRTK-FTDAGL 191
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
K A L L +++ T + G G +L ++ + ++ +S L L +
Sbjct: 192 KELAALPALGSVNVT-ATPVTGTAFAEPGWSRLREIDATQ-TAFNAAGLEAVSALPVLGT 249
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L + + VTDSG+ +L + L L+L PV + +L+ + +L LNL R ++
Sbjct: 250 LTLDATAVTDSGLKHLARARALQELSLADTPVADTGVAALAGVQTLRVLNLERTGVTGAA 309
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
F L+ LNL TD HL L L +L+L C + D GL L L L
Sbjct: 310 FATFPVPAELRKLNLAETRFTDASGSHLARLPALTNLSLSGCDVTDAGLARLADLKKLAN 369
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
L+L+ T+ G L LE ++ T ++D L+ A + L+ L + ++T G
Sbjct: 370 LDLTGTKAGDGAAEVAGTLAELEVVSFRGTQLTDAGLKAAAHGARLRFLYVRGSKVTKRG 429
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 121/280 (43%), Gaps = 29/280 (10%)
Query: 237 RCQLSDDGCEKFSKIGSLK-VLNLGF--NEITDECLVHLKGLTNLESLNLDSCG-IGDEG 292
R + + D + + LK V + F + +TD L + G +L S L CG + G
Sbjct: 84 RVERTADLAPALATLKGLKCVTEVTFASDRLTDTDLACIAGFEHLRSFGLRDCGRVTGAG 143
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
L L LK + L +G HL + LE++ L T +D L++LA L +L S
Sbjct: 144 FGVLAQLPRLKWVSLVGPVTDEAG-PHLGRIKTLETVVLYRTKFTDAGLKELAALPALGS 202
Query: 353 LNLDARQITDT-----------------------GLAALTSLTGLTHLDLFGARITDSGA 389
+N+ A +T T GL A+++L L L L +TDSG
Sbjct: 203 VNVTATPVTGTAFAEPGWSRLREIDATQTAFNAAGLEAVSALPVLGTLTLDATAVTDSGL 262
Query: 390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 449
+L + L+ L + + D GV + + +L +LNL + +T L
Sbjct: 263 KHLARARALQELSLADTPVADTGVAALAGVQTLRVLNL-ERTGVTGAAFATFPVPAELRK 321
Query: 450 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
LN++ +R T A HL L L +L+L C VT + RL
Sbjct: 322 LNLAETRFTDASGSHLARLPALTNLSLSGCDVTDAGLARL 361
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 80/207 (38%), Gaps = 27/207 (13%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L + VTDSGL HL LQ L + + G
Sbjct: 252 LDATAVTDSGLKHLARARALQELSLA--------------------------DTPVADTG 285
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ A AG+ L L+LER +L LN+ TD+ L+ L L
Sbjct: 286 VAALAGVQTLRVLNLERTGVTGAAFATFPVPAELRKLNLAETR-FTDASGSHLARLPALT 344
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+L +S VTD+G+A L L+KL L+L G + L L ++ QL+D
Sbjct: 345 NLSLSGCDVTDAGLARLADLKKLANLDLTGTKAGDGAAEVAGTLAELEVVSFRGTQLTDA 404
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLV 270
G + + L+ L + +++T V
Sbjct: 405 GLKAAAHGARLRFLYVRGSKVTKRGAV 431
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 8/114 (7%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L ++ LSG DVTD+GL L D L +LD + DG E L+ L +SF R
Sbjct: 341 PALTNLSLSGCDVTDAGLARLADLKKLANLDLT-GTKAGDGAAEVAGTLAELEVVSF-RG 398
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
+T G+KA A L R + G V +G + + + C + +
Sbjct: 399 TQLTDAGLKAAAHGARL------RFLYVRGSKVTKRGAVDAGKVVREGCRIVAE 446
>gi|449132603|ref|ZP_21768618.1| leucine-rich repeat domain protein [Rhodopirellula europaea 6C]
gi|448888282|gb|EMB18604.1| leucine-rich repeat domain protein [Rhodopirellula europaea 6C]
Length = 455
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 100/320 (31%), Positives = 151/320 (47%), Gaps = 29/320 (9%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
PG++D M+ + S + L + LS + +TD + + L+ L F ++D GLE
Sbjct: 118 PGIDDAGMENLTSL-TKLERLILSDTAITDRTIETAGKMNTLEVL-FLRRTGVTDEGLEL 175
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L GLS L ++ R N I GM A + L + LE+ GLV L L L+ +N
Sbjct: 176 LTGLSKLRAIDLRNTN-IGDAGMDPLAKIKTLADVQLEKSKVTDEGLVKLAPL-PLKYIN 233
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-- 219
+C I MK L L+ LQ SK+ D+ +A LKGL KLT L + GC VT
Sbjct: 234 FNYCTTINGPTMKMLGQTPTLERLQGDYSKINDASMAELKGLSKLTHLRIRGCDVTGEGI 293
Query: 220 ----------------------CLDSLSALGSLFYLNLNRCQL-SDDGCEKFSKIGSLKV 256
L+ +S L ++ +++++ C+L S +G + K+ L
Sbjct: 294 KHIANNKALAKFELRDSSVDDKGLEVISQLPAVTHVDISECRLASPEGIAQLGKLTGLTY 353
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
L L + D L L NLE LNL S + D+ L L + LK L ++ TQ+G
Sbjct: 354 LGLWETKTNDATLEAFGELVNLEELNLKSTSVTDQSLPVLMKMTKLKTLNVAGTQLGDDS 413
Query: 317 LRHLSGLTNLESINLSFTGI 336
L+ L NL+S+N++ T I
Sbjct: 414 FLELAKLPNLKSMNVANTSI 433
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 149/291 (51%), Gaps = 4/291 (1%)
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
+ + +L G+ + G + A +++L++L L L L+ ++D E K+ +
Sbjct: 98 EESMQHLSGIPNTLIATFNGPGIDDAGMENLTSLTKLERLILSDTAITDRTIETAGKMNT 157
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
L+VL L +TDE L L GL+ L +++L + IGD G+ L + L ++L ++V
Sbjct: 158 LEVLFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDPLAKIKTLADVQLEKSKVT 217
Query: 314 SSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
GL L+ L L+ IN ++ T I+ +++ L +L+ L D +I D +A L L+
Sbjct: 218 DEGLVKLAPLP-LKYINFNYCTTINGPTMKMLGQTPTLERLQGDYSKINDASMAELKGLS 276
Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
LTHL + G +T G ++ N K L E+ + D G++ I L ++T +++S+ C
Sbjct: 277 KLTHLRIRGCDVTGEGIKHIANNKALAKFELRDSSVDDKGLEVISQLPAVTHVDISE-CR 335
Query: 433 L-TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
L + + + + LTGL L + ++ A L L NL L L+S VT
Sbjct: 336 LASPEGIAQLGKLTGLTYLGLWETKTNDATLEAFGELVNLEELNLKSTSVT 386
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 90/336 (26%), Positives = 153/336 (45%), Gaps = 6/336 (1%)
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
+ + HL N FN I D G+E+L L+ L L + AIT + ++ +
Sbjct: 98 EESMQHLSGIPNTLIATFN-GPGIDDAGMENLTSLTKLERLILS-DTAITDRTIETAGKM 155
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
L L L R GL L GL KL +++++ N I D+ M PL+ + L +Q+ S
Sbjct: 156 NTLEVLFLRRTGVTDEGLELLTGLSKLRAIDLRNTN-IGDAGMDPLAKIKTLADVQLEKS 214
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
KVTD G+ L L L +N C + + L +L L + +++D +
Sbjct: 215 KVTDEGLVKLAPL-PLKYINFNYCTTINGPTMKMLGQTPTLERLQGDYSKINDASMAELK 273
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
+ L L + ++T E + H+ L L + D+GL ++ L + +++S+
Sbjct: 274 GLSKLTHLRIRGCDVTGEGIKHIANNKALAKFELRDSSVDDKGLEVISQLPAVTHVDISE 333
Query: 310 TQVGSS-GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
++ S G+ L LT L + L T +D +L L +L+ LNL + +TD L L
Sbjct: 334 CRLASPEGIAQLGKLTGLTYLGLWETKTNDATLEAFGELVNLEELNLKSTSVTDQSLPVL 393
Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
+T L L++ G ++ D L NL+S+ +
Sbjct: 394 MKMTKLKTLNVAGTQLGDDSFLELAKLPNLKSMNVA 429
>gi|290979162|ref|XP_002672303.1| predicted protein [Naegleria gruberi]
gi|284085879|gb|EFC39559.1| predicted protein [Naegleria gruberi]
Length = 371
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 101/381 (26%), Positives = 182/381 (47%), Gaps = 28/381 (7%)
Query: 98 GLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
G+E + +S L L+ + +N I +G K + L L LD+ G+ ++ L
Sbjct: 15 GVEEAKYISELKQLTHLYISSNKIGVEGAKYISELKQLTNLDISYNNIGAEGVEHIGNLK 74
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
+L L I + N I D K LS L L L + + + G+ Y+ L++L+
Sbjct: 75 QLTFLCI-YHNNIGDEGAKHLSALKQLTYLYTAFNNIGVEGVKYIIKLKQLS-------- 125
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
YLN+ ++ D+G + S++ L LN+ + I + + H+ +
Sbjct: 126 ----------------YLNICSNKVGDEGAKYLSELKQLTNLNISNSNICAKGVEHITEM 169
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
L LN+ + IG EG + L L CL + + + G +++S + L +N+S+
Sbjct: 170 NQLTILNISTNNIGIEGAKYIGKLKQLTCLNIYYSNIDIEGAKYISEMKQLTDLNISYNN 229
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
I + + L L L + I D G ++ L LT+L+++ I D GA Y+
Sbjct: 230 IGIEGAKYIGKLKQLTCLTIYNNYICDEGAKYISELNQLTNLNIYSNNIGDEGAKYISEL 289
Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 455
K L +L+I + GVK+I +L+ LT+L+ S N N+ D+ + IS L L +L++S++
Sbjct: 290 KQLTNLDISVNQIGAKGVKYIAELNQLTILSASLN-NIRDEGAKYISELKQLTNLDISSN 348
Query: 456 RITSAGLRHLKPLKNLRSLTL 476
I+ G++ + +K+L L +
Sbjct: 349 NISIEGVKCFEEMKHLTVLEI 369
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 160/325 (49%), Gaps = 5/325 (1%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
+K L KL S N N I + K +S L L L IS +K+ G Y+ L++LT L+
Sbjct: 1 MKSLTKLISCN----NNIGVEEAKYISELKQLTHLYISSNKIGVEGAKYISELKQLTNLD 56
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
+ + A ++ + L L +L + + D+G + S + L L FN I E +
Sbjct: 57 ISYNNIGAEGVEHIGNLKQLTFLCIYHNNIGDEGAKHLSALKQLTYLYTAFNNIGVEGVK 116
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
++ L L LN+ S +GDEG L+ L L L +S++ + + G+ H++ + L +N
Sbjct: 117 YIIKLKQLSYLNICSNKVGDEGAKYLSELKQLTNLNISNSNICAKGVEHITEMNQLTILN 176
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
+S I + + L L LN+ I G ++ + LT L++ I GA
Sbjct: 177 ISTNNIGIEGAKYIGKLKQLTCLNIYYSNIDIEGAKYISEMKQLTDLNISYNNIGIEGAK 236
Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
Y+ K L L I + D G K+I +L+ LT LN+ N N+ D+ + IS L L +L
Sbjct: 237 YIGKLKQLTCLTIYNNYICDEGAKYISELNQLTNLNIYSN-NIGDEGAKYISELKQLTNL 295
Query: 451 NVSNSRITSAGLRHLKPLKNLRSLT 475
++S ++I + G++++ L L L+
Sbjct: 296 DISVNQIGAKGVKYIAELNQLTILS 320
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 155/332 (46%), Gaps = 2/332 (0%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
G +++ L LT+L NN I A+G++ L L L + G +L L +L
Sbjct: 42 GAKYISELKQLTNLDISYNN-IGAEGVEHIGNLKQLTFLCIYHNNIGDEGAKHLSALKQL 100
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
L + N I +K + L L L I +KV D G YL L++LT LN+ +
Sbjct: 101 TYLYTAFNN-IGVEGVKYIIKLKQLSYLNICSNKVGDEGAKYLSELKQLTNLNISNSNIC 159
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
A ++ ++ + L LN++ + +G + K+ L LN+ ++ I E ++ +
Sbjct: 160 AKGVEHITEMNQLTILNISTNNIGIEGAKYIGKLKQLTCLNIYYSNIDIEGAKYISEMKQ 219
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L LN+ IG EG + L L CL + + + G +++S L L ++N+ I
Sbjct: 220 LTDLNISYNNIGIEGAKYIGKLKQLTCLTIYNNYICDEGAKYISELNQLTNLNIYSNNIG 279
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
D + ++ L L +L++ QI G+ + L LT L I D GA Y+ K
Sbjct: 280 DEGAKYISELKQLTNLDISVNQIGAKGVKYIAELNQLTILSASLNNIRDEGAKYISELKQ 339
Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 429
L +L+I ++ GVK +++ LT+L + Q
Sbjct: 340 LTNLDISSNNISIEGVKCFEEMKHLTVLEIYQ 371
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 89/207 (42%), Gaps = 28/207 (13%)
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
+K LT L S N + IG E ++ L L L +S ++G G +++S L L ++++
Sbjct: 1 MKSLTKLISCNNN---IGVEEAKYISELKQLTHLYISSNKIGVEGAKYISELKQLTNLDI 57
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
S+ I + + L L L + I D G L++L LT+L I G Y
Sbjct: 58 SYNNIGAEGVEHIGNLKQLTFLCIYHNNIGDEGAKHLSALKQLTYLYTAFNNIGVEGVKY 117
Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
+ K L L IC + D G K++ +L LT +LN
Sbjct: 118 IIKLKQLSYLNICSNKVGDEGAKYLSELKQLT-------------------------NLN 152
Query: 452 VSNSRITSAGLRHLKPLKNLRSLTLES 478
+SNS I + G+ H+ + L L + +
Sbjct: 153 ISNSNICAKGVEHITEMNQLTILNIST 179
>gi|46445970|ref|YP_007335.1| hypothetical protein pc0336 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399611|emb|CAF23060.1| hypothetical protein pc0336 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 602
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 100/276 (36%), Positives = 154/276 (55%), Gaps = 7/276 (2%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L +TD+ L+ LK+C NL+ L C ++D GL HL L L L N +T G
Sbjct: 291 LENDYLTDTHLLVLKNCKNLKELYLQRCHNLTDAGLAHLAPLLALQHLDLSECNNLTDAG 350
Query: 124 MKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
+ L+ L L+L C + GL +L L+ L+ L++ C+ +TD+ + L+ L L
Sbjct: 351 LAHLTPLMALQHLNLSYCKNLTDAGLAHLTPLVALQYLDLSGCDNLTDAGLAHLTPLMAL 410
Query: 183 KSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
+ L +S C K+TD+G+A+L L L L+L GC +T L L+ L +L +LNL+ C +
Sbjct: 411 QHLGLSACDKLTDAGLAHLTPLVALQYLSLNGCDKLTDVGLAHLTPLVALTHLNLSWCDK 470
Query: 240 LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT 297
L+D G + + +L+ LNL + ++TD L HL L L+ L+L+ C + D GL +LT
Sbjct: 471 LTDAGLAHLTPLVALQHLNLRWCRKLTDAGLAHLTPLVALQHLDLNRCPKLTDAGLAHLT 530
Query: 298 GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS 332
L NL+ L LS ++ GL HL+ L L+ +NLS
Sbjct: 531 SLVNLRHLNLSYCRKLTDVGLAHLTPLVALQHLNLS 566
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 144/454 (31%), Positives = 235/454 (51%), Gaps = 33/454 (7%)
Query: 3 PRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSV 62
P ++Q+ F L+ CL + + + + + L Y + + V+ + G LL +
Sbjct: 165 PLTLTQKEFIHLL--NCLMDANFKVSEEDIPSFIQLADYYQLTE----VVKNLGEQLLDI 218
Query: 63 DLSGS----DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
S + ++ L+ LK+ NF Q L++ L+ ++SL + +
Sbjct: 219 YKSKKFELFNSSEDSLVELKEV-------LNFARQYQLNTLKNYLELTVVSSL-LNQTSQ 270
Query: 119 ITA--QGMKAFAGLINLVKLD-LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+T + +K F+ I +LD LE L+ LK L+ L ++ C+ +TD+ +
Sbjct: 271 LTEFEKILKHFSNEIE--RLDFLENDYLTDTHLLVLKNCKNLKELYLQRCHNLTDAGLAH 328
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYL 233
L+ L L+ L +S C+ +TD+G+A+L L L LNL C +T A L L+ L +L YL
Sbjct: 329 LAPLLALQHLDLSECNNLTDAGLAHLTPLMALQHLNLSYCKNLTDAGLAHLTPLVALQYL 388
Query: 234 NLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGD 290
+L+ C L+D G + + +L+ L L +++TD L HL L L+ L+L+ C + D
Sbjct: 389 DLSGCDNLTDAGLAHLTPLMALQHLGLSACDKLTDAGLAHLTPLVALQYLSLNGCDKLTD 448
Query: 291 EGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLS 348
GL +LT L L L LS ++ +GL HL+ L L+ +NL + ++D L L L
Sbjct: 449 VGLAHLTPLVALTHLNLSWCDKLTDAGLAHLTPLVALQHLNLRWCRKLTDAGLAHLTPLV 508
Query: 349 SLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEI-CG 405
+L+ L+L+ ++TD GLA LTSL L HL+L + ++TD G A+L L+ L + C
Sbjct: 509 ALQHLDLNRCPKLTDAGLAHLTSLVNLRHLNLSYCRKLTDVGLAHLTPLVALQHLNLSCC 568
Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
LTDAG+ H+ L +L L+LS LTD LE
Sbjct: 569 RKLTDAGLAHLASLLALQHLDLSGCDKLTDAVLE 602
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 110/309 (35%), Positives = 160/309 (51%), Gaps = 31/309 (10%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E L+ + +TD+ + L NLK L + C +TD+G+A+L L L L+L C
Sbjct: 284 EIERLDFLENDYLTDTHLLVLKNCKNLKELYLQRCHNLTDAGLAHLAPLLALQHLDLSEC 343
Query: 215 P-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVH 271
+T A L L+ L +L +LNL+ C+ L+D G + + +L+ L+L G + +TD L H
Sbjct: 344 NNLTDAGLAHLTPLMALQHLNLSYCKNLTDAGLAHLTPLVALQYLDLSGCDNLTDAGLAH 403
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESI 329
L L L+ L L +C + D GL +LT L L+ L L+ ++ GL HL+ L L +
Sbjct: 404 LTPLMALQHLGLSACDKLTDAGLAHLTPLVALQYLSLNGCDKLTDVGLAHLTPLVALTHL 463
Query: 330 NLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDS 387
NLS+ ++D L L L +L+ LNL R++TD GLA LT L L HLDL
Sbjct: 464 NLSWCDKLTDAGLAHLTPLVALQHLNLRWCRKLTDAGLAHLTPLVALQHLDL-------- 515
Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
C LTDAG+ H+ L +L LNLS LTD L ++ L L
Sbjct: 516 --------------NRCPK-LTDAGLAHLTSLVNLRHLNLSYCRKLTDVGLAHLTPLVAL 560
Query: 448 VSLNVSNSR 456
LN+S R
Sbjct: 561 QHLNLSCCR 569
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 113/224 (50%), Gaps = 28/224 (12%)
Query: 262 NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRH 319
N +TD L HL L L+ LNL C + D GL +LT L L+ L+LS + +GL H
Sbjct: 344 NNLTDAGLAHLTPLMALQHLNLSYCKNLTDAGLAHLTPLVALQYLDLSGCDNLTDAGLAH 403
Query: 320 LSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHL 377
L+ L L+ + LS ++D L L L +L+ L+L+ ++TD GLA LT L LTHL
Sbjct: 404 LTPLMALQHLGLSACDKLTDAGLAHLTPLVALQYLSLNGCDKLTDVGLAHLTPLVALTHL 463
Query: 378 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
+L C LTDAG+ H+ L +L LNL LTD
Sbjct: 464 NL----------------------SWCDK-LTDAGLAHLTPLVALQHLNLRWCRKLTDAG 500
Query: 438 LELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 480
L ++ L L L+++ ++T AGL HL L NLR L L C+
Sbjct: 501 LAHLTPLVALQHLDLNRCPKLTDAGLAHLTSLVNLRHLNLSYCR 544
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Query: 384 ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
+TD+ L+N KNL+ L + LTDAG+ H+ L +L L+LS+ NLTD L ++
Sbjct: 296 LTDTHLLVLKNCKNLKELYLQRCHNLTDAGLAHLAPLLALQHLDLSECNNLTDAGLAHLT 355
Query: 443 GLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESC 479
L L LN+S + +T AGL HL PL L+ L L C
Sbjct: 356 PLMALQHLNLSYCKNLTDAGLAHLTPLVALQYLDLSGC 393
>gi|46445969|ref|YP_007334.1| hypothetical protein pc0335 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399610|emb|CAF23059.1| hypothetical protein pc0335 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 642
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 123/338 (36%), Positives = 170/338 (50%), Gaps = 42/338 (12%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E+LN +TD+ + L NLK LQ+ +C TD+G+A+L L L LNL C
Sbjct: 305 EIEALNFSKNAHLTDAQLLTLKNCKNLKVLQLQACHNFTDAGLAHLTPLMALQHLNLSYC 364
Query: 215 P-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVH 271
+T A L L+ L L +LNL+ C L+D G + + +L LNL + N++TD L H
Sbjct: 365 KNLTDAGLAHLAPLVVLQHLNLSSCHNLTDAGLAHLTPLVALTHLNLSWCNKLTDAGLAH 424
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNL------KCLELSDTQVGSSGLRHLSGLT 324
L L L L+L C + + GL +L L L C L+D +GL HLS L
Sbjct: 425 LTPLVALTHLDLRECDKLTNRGLAHLALLLTLQYLDLNYCRNLTD-----AGLAHLSSLV 479
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL-FGAR 383
L+ + KL SL TD GLA L L LTHLDL +
Sbjct: 480 ALQHL-------------KLCCCVSL----------TDAGLAHLAPLVALTHLDLSWCFN 516
Query: 384 ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
ITD+G A+L L+ L + G LTD G+ H+ L +L L L++ NLTD L ++
Sbjct: 517 ITDAGLAHLTPLVTLQHLGLSGCRRLTDVGLAHLTRLVALQHLGLNRCDNLTDAGLAHLT 576
Query: 443 GLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESC 479
L L L++S R +T+AGL HL PL L+ L L C
Sbjct: 577 PLINLQHLDLSECRKLTNAGLAHLTPLVALQRLDLRCC 614
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 114/324 (35%), Positives = 168/324 (51%), Gaps = 11/324 (3%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
+ +TD+ L+ LK+C NL+ L C +D GL HL L L L+ +T G+
Sbjct: 314 NAHLTDAQLLTLKNCKNLKVLQLQACHNFTDAGLAHLTPLMALQHLNLSYCKNLTDAGLA 373
Query: 126 AFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A L+ L L+L C + GL +L L+ L LN+ WCN +TD+ + L+ L L
Sbjct: 374 HLAPLVVLQHLNLSSCHNLTDAGLAHLTPLVALTHLNLSWCNKLTDAGLAHLTPLVALTH 433
Query: 185 LQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLS 241
L + C K+T+ G+A+L L L L+L C +T A L LS+L +L +L L C L+
Sbjct: 434 LDLRECDKLTNRGLAHLALLLTLQYLDLNYCRNLTDAGLAHLSSLVALQHLKLCCCVSLT 493
Query: 242 DDGCEKFSKIGSLKVLNLG--FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 298
D G + + +L L+L FN ITD L HL L L+ L L C + D GL +LT
Sbjct: 494 DAGLAHLAPLVALTHLDLSWCFN-ITDAGLAHLTPLVTLQHLGLSGCRRLTDVGLAHLTR 552
Query: 299 LCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD 356
L L+ L L+ + +GL HL+ L NL+ ++LS +++ L L L +L+ L+L
Sbjct: 553 LVALQHLGLNRCDNLTDAGLAHLTPLINLQHLDLSECRKLTNAGLAHLTPLVALQRLDLR 612
Query: 357 -ARQITDTGLAALTSLTGLTHLDL 379
++T LA L HLDL
Sbjct: 613 CCNKLTGARLAHFKFLVAKPHLDL 636
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 139/301 (46%), Gaps = 63/301 (20%)
Query: 247 KFSKI-----GSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 299
+F KI ++ LN N +TD L+ LK NL+ L L +C D GL +LT L
Sbjct: 294 EFEKILNHFSNEIEALNFSKNAHLTDAQLLTLKNCKNLKVLQLQACHNFTDAGLAHLTPL 353
Query: 300 CNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA 357
L+ L LS + + +GL HL+ L L+ +NLS ++D L L L +L LNL
Sbjct: 354 MALQHLNLSYCKNLTDAGLAHLAPLVVLQHLNLSSCHNLTDAGLAHLTPLVALTHLNLSW 413
Query: 358 -RQITDTGLAALTSLTGLTHLDL--------------------------FGARITDSGAA 390
++TD GLA LT L LTHLDL + +TD+G A
Sbjct: 414 CNKLTDAGLAHLTPLVALTHLDLRECDKLTNRGLAHLALLLTLQYLDLNYCRNLTDAGLA 473
Query: 391 YLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 449
+L + L+ L++C LTDAG+ H+ L +LT L+LS N+TD L ++ L L
Sbjct: 474 HLSSLVALQHLKLCCCVSLTDAGLAHLAPLVALTHLDLSWCFNITDAGLAHLTPLVTLQH 533
Query: 450 LNVSNSR--------------------------ITSAGLRHLKPLKNLRSLTLESCKVTA 483
L +S R +T AGL HL PL NL+ L L C+
Sbjct: 534 LGLSGCRRLTDVGLAHLTRLVALQHLGLNRCDNLTDAGLAHLTPLINLQHLDLSECRKLT 593
Query: 484 N 484
N
Sbjct: 594 N 594
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 2/136 (1%)
Query: 58 SLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DLS ++TD+GL HL LQ L + C +++D GL HL L L L R
Sbjct: 505 ALTHLDLSWCFNITDAGLAHLTPLVTLQHLGLSGCRRLTDVGLAHLTRLVALQHLGLNRC 564
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+ +T G+ LINL LDL C ++ + GL +L L+ L+ L+++ CN +T + +
Sbjct: 565 DNLTDAGLAHLTPLINLQHLDLSECRKLTNAGLAHLTPLVALQRLDLRCCNKLTGARLAH 624
Query: 176 LSGLTNLKSLQISCSK 191
L L + K
Sbjct: 625 FKFLVAKPHLDLRWYK 640
>gi|290978443|ref|XP_002671945.1| predicted protein [Naegleria gruberi]
gi|284085518|gb|EFC39201.1| predicted protein [Naegleria gruberi]
Length = 381
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 96/350 (27%), Positives = 174/350 (49%), Gaps = 7/350 (2%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ L+SL+I N + D +K +S + L L +S +K G + G+ LT LN+
Sbjct: 1 MQNLKSLSI-VGNGLVDEHLKEISEMKGLTLLDVSENKFGKEGAEKISGMVGLTTLNIND 59
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ + + L L + C++ ++G S++ +L LNL N I D+ ++
Sbjct: 60 NYILDEGAKFIGTMKQLTLLKMKYCEIREEGARAISELKNLTFLNLHGNFIGDKGASYIS 119
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE---SIN 330
+ NL LN+ S + EG +++GL NLK L + Q+G G + +S + +LE S++
Sbjct: 120 EMVNLTHLNVGSTQLTAEGARHVSGLKNLKSLLIHTNQIGHQGAKWISTMKDLEGLTSLD 179
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
+S I D ++ L+ +S+L L++ + + G+ ++ + GL L++ + SGA
Sbjct: 180 VSGNSILDQGVQYLSEMSNLTHLDIGSNHVGVKGIESIIGMKGLISLNVSSNDLGSSGAK 239
Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
+ NL SL I L G K I ++ ++T+L + +N ++ D+ + I + L SL
Sbjct: 240 LISGMSNLTSLNISANRLLGEGAKFIGEMHNVTIL-VIRNNDIGDEGAKFICKMKQLKSL 298
Query: 451 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 500
N +RI+S G + +K L SL + + + K + R L NL S
Sbjct: 299 NAVYNRISSKGFESISEMKQLTSLDIGYNSIDSKGAKSV--RKLKNLTSL 346
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/323 (26%), Positives = 158/323 (48%), Gaps = 28/323 (8%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+ +SG+ L +L I+ + + D G ++ +++LTLL ++ C + ++S L +L +L
Sbjct: 44 EKISGMVGLTTLNINDNYILDEGAKFIGTMKQLTLLKMKYCEIREEGARAISELKNLTFL 103
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG---- 289
NL+ + D G S++ +L LN+G ++T E H+ GL NL+SL + + IG
Sbjct: 104 NLHGNFIGDKGASYISEMVNLTHLNVGSTQLTAEGARHVSGLKNLKSLLIHTNQIGHQGA 163
Query: 290 -----------------------DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
D+G+ L+ + NL L++ VG G+ + G+ L
Sbjct: 164 KWISTMKDLEGLTSLDVSGNSILDQGVQYLSEMSNLTHLDIGSNHVGVKGIESIIGMKGL 223
Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
S+N+S + + ++G+S+L SLN+ A ++ G + + +T L + I D
Sbjct: 224 ISLNVSSNDLGSSGAKLISGMSNLTSLNISANRLLGEGAKFIGEMHNVTILVIRNNDIGD 283
Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 446
GA ++ K L+SL ++ G + I ++ LT L++ N + K + + L
Sbjct: 284 EGAKFICKMKQLKSLNAVYNRISSKGFESISEMKQLTSLDIGYNS-IDSKGAKSVRKLKN 342
Query: 447 LVSLNVSNSRITSAGLRHLKPLK 469
L SLNV ++ I GL+ + LK
Sbjct: 343 LTSLNVRSNMIDDEGLKAIGQLK 365
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 93/349 (26%), Positives = 166/349 (47%), Gaps = 30/349 (8%)
Query: 100 EHLRGLSNLTSLSF--RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
EHL+ +S + L+ N +G + +G++ L L++ + G + + +L
Sbjct: 17 EHLKEISEMKGLTLLDVSENKFGKEGAEKISGMVGLTTLNINDNYILDEGAKFIGTMKQL 76
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
L +K+C I + + +S L NL L + + + D G +Y+ + LT LN+ +T
Sbjct: 77 TLLKMKYCE-IREEGARAISELKNLTFLNLHGNFIGDKGASYISEMVNLTHLNVGSTQLT 135
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK---VLNLGFNEITDECLVHLKG 274
A +S L +L L ++ Q+ G + S + L+ L++ N I D+ + +L
Sbjct: 136 AEGARHVSGLKNLKSLLIHTNQIGHQGAKWISTMKDLEGLTSLDVSGNSILDQGVQYLSE 195
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS-- 332
++NL L++ S +G +G+ ++ G+ L L +S +GSSG + +SG++NL S+N+S
Sbjct: 196 MSNLTHLDIGSNHVGVKGIESIIGMKGLISLNVSSNDLGSSGAKLISGMSNLTSLNISAN 255
Query: 333 --------FTG--------------ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
F G I D + + + LKSLN +I+ G +++
Sbjct: 256 RLLGEGAKFIGEMHNVTILVIRNNDIGDEGAKFICKMKQLKSLNAVYNRISSKGFESISE 315
Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
+ LT LD+ I GA +R KNL SL + + D G+K I L
Sbjct: 316 MKQLTSLDIGYNSIDSKGAKSVRKLKNLTSLNVRSNMIDDEGLKAIGQL 364
>gi|290996081|ref|XP_002680611.1| predicted protein [Naegleria gruberi]
gi|284094232|gb|EFC47867.1| predicted protein [Naegleria gruberi]
Length = 412
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 158/313 (50%), Gaps = 19/313 (6%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
+ K ++ + L SL IS +++ D G Y+ +++LT L++ + +S + L
Sbjct: 118 EAKFITEMKQLTSLDISENQIGDEGAKYISEMRQLTSLDISDIEIGDEGAKYISEMKQLT 177
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
LN++ +SD+G + S++ L L++ N I DE +++ + L SLN+ I DE
Sbjct: 178 SLNISYNAISDEGAKFISEMKQLMSLHIYKNLIGDEGAKYIREMKQLTSLNISYNSISDE 237
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
G ++ + L L++ ++ G + +S + L S+++S I D ++ L+ + L
Sbjct: 238 GAKFISEMKQLTSLDIVFNEISGEGAKFISEMKQLTSLDISDNEIGDEGVKYLSEMKQLT 297
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
SL + +IT + +I++ GA ++ K L SL+I ++D
Sbjct: 298 SLTISGNEIT------------------YCNQISEEGAKFISEMKQLTSLDISYNLISDE 339
Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 471
G K+I ++ LT LN+S N ++ + + IS + L SL++ ++RI G +++ +K L
Sbjct: 340 GAKYISEMKQLTSLNISYNS-ISGEGAKFISEMKQLTSLDIVSNRIGDEGAKYISEMKQL 398
Query: 472 RSLTLESCKVTAN 484
SL + + +N
Sbjct: 399 TSLNISDNQFNSN 411
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 145/283 (51%), Gaps = 7/283 (2%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SL+I N I D K +S + L SL IS ++ D G Y+ +++LT LN+
Sbjct: 125 MKQLTSLDIS-ENQIGDEGAKYISEMRQLTSLDISDIEIGDEGAKYISEMKQLTSLNISY 183
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
++ +S + L L++ + + D+G + ++ L LN+ +N I+DE +
Sbjct: 184 NAISDEGAKFISEMKQLMSLHIYKNLIGDEGAKYIREMKQLTSLNISYNSISDEGAKFIS 243
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
+ L SL++ I EG ++ + L L++SD ++G G+++LS + L S+ +S
Sbjct: 244 EMKQLTSLDIVFNEISGEGAKFISEMKQLTSLDISDNEIGDEGVKYLSEMKQLTSLTISG 303
Query: 334 ------TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
IS+ + ++ + L SL++ I+D G ++ + LT L++ I+
Sbjct: 304 NEITYCNQISEEGAKFISEMKQLTSLDISYNLISDEGAKYISEMKQLTSLNISYNSISGE 363
Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
GA ++ K L SL+I + D G K+I ++ LT LN+S N
Sbjct: 364 GAKFISEMKQLTSLDIVSNRIGDEGAKYISEMKQLTSLNISDN 406
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 141/286 (49%), Gaps = 33/286 (11%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+D+S + + D G ++ + L SLD + I+I D G +++ + LTSL+ N A
Sbjct: 128 LTSLDISENQIGDEGAKYISEMRQLTSLDIS-DIEIGDEGAKYISEMKQLTSLNISYN-A 185
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD------SD 172
I+ +G K + + L+ L + + G ++ + +L SLNI + N I+D S+
Sbjct: 186 ISDEGAKFISEMKQLMSLHIYKNLIGDEGAKYIREMKQLTSLNISY-NSISDEGAKFISE 244
Query: 173 MKPL------------------SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
MK L S + L SL IS +++ D G+ YL +++LT L + G
Sbjct: 245 MKQLTSLDIVFNEISGEGAKFISEMKQLTSLDISDNEIGDEGVKYLSEMKQLTSLTISGN 304
Query: 215 PVTAACLDS------LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
+T S +S + L L+++ +SD+G + S++ L LN+ +N I+ E
Sbjct: 305 EITYCNQISEEGAKFISEMKQLTSLDISYNLISDEGAKYISEMKQLTSLNISYNSISGEG 364
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
+ + L SL++ S IGDEG ++ + L L +SD Q S
Sbjct: 365 AKFISEMKQLTSLDIVSNRIGDEGAKYISEMKQLTSLNISDNQFNS 410
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 138/279 (49%), Gaps = 21/279 (7%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D+S ++ D G ++ + L SL+ ++ ISD G + + + L SL
Sbjct: 147 SEMRQLTSLDISDIEIGDEGAKYISEMKQLTSLNISYN-AISDEGAKFISEMKQLMSLHI 205
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+ N I +G K + L L++ + G + + +L SL+I + N I+
Sbjct: 206 YK-NLIGDEGAKYIREMKQLTSLNISYNSISDEGAKFISEMKQLTSLDIVF-NEISGEGA 263
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL IS +++ D G+ YL +++LT L + G +T Y
Sbjct: 264 KFISEMKQLTSLDISDNEIGDEGVKYLSEMKQLTSLTISGNEIT--------------YC 309
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
N Q+S++G + S++ L L++ +N I+DE ++ + L SLN+ I EG
Sbjct: 310 N----QISEEGAKFISEMKQLTSLDISYNLISDEGAKYISEMKQLTSLNISYNSISGEGA 365
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
++ + L L++ ++G G +++S + L S+N+S
Sbjct: 366 KFISEMKQLTSLDIVSNRIGDEGAKYISEMKQLTSLNIS 404
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 113/229 (49%), Gaps = 8/229 (3%)
Query: 41 YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
Y ++D+ I S+ L+S+ + + + D G ++++ L SL+ ++ ISD G +
Sbjct: 183 YNAISDEGAKFI-SEMKQLMSLHIYKNLIGDEGAKYIREMKQLTSLNISYN-SISDEGAK 240
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+ + LTSL N I+ +G K + + L LD+ G+ L + +L SL
Sbjct: 241 FISEMKQLTSLDIVFN-EISGEGAKFISEMKQLTSLDISDNEIGDEGVKYLSEMKQLTSL 299
Query: 161 -----NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
I +CN I++ K +S + L SL IS + ++D G Y+ +++LT LN+
Sbjct: 300 TISGNEITYCNQISEEGAKFISEMKQLTSLDISYNLISDEGAKYISEMKQLTSLNISYNS 359
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
++ +S + L L++ ++ D+G + S++ L LN+ N+
Sbjct: 360 ISGEGAKFISEMKQLTSLDIVSNRIGDEGAKYISEMKQLTSLNISDNQF 408
>gi|83748568|ref|ZP_00945588.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
gi|83724776|gb|EAP71934.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
Length = 629
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 136/460 (29%), Positives = 211/460 (45%), Gaps = 10/460 (2%)
Query: 11 FNELVYSRCLTEVSLEAFR--DCALQDLCLGQY--PGVNDKWMDVIASQGSSLLSVDLSG 66
+ L R E++LEA + ++ L +G+ GV++ + ++A++ L S+ L+G
Sbjct: 143 YPALKSVRFKGELTLEALKALPPGVEHLEIGRSTGSGVSNAGLALLATR--PLKSLSLNG 200
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++ G L C++L SL C I D L ++ SL N I G +A
Sbjct: 201 IEIDAEGARLLATCASLTSLSLTGC-SIGDRAATALAQSRSIASLDLSVN-MIGPDGARA 258
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
AG LV L+L G + L L+SLN N I D+ + + T L L
Sbjct: 259 LAG-APLVSLNLHNNGIGDEGALALATSGTLKSLNAS-NNGIGDAGVLGFADNTVLTQLN 316
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
++ + + +G L+ LT L+L + A L+ SL LN+ ++ DDG E
Sbjct: 317 LAGNMIGPAGARALRRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNVRNNEIGDDGTE 376
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
++ +LK LNL +N I + L G T L L+L +C I G L ++ L
Sbjct: 377 ALARNTTLKSLNLSYNRIGLQGAGALGGNTTLSELDLRACAIDPYGASALARNTSVASLH 436
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
L ++G SG R ++ + L ++LS I D + LAG SL SLNLD +I D G A
Sbjct: 437 LGSNRIGDSGARAIATIRTLTLLDLSRNNIHDAGAQVLAGNDSLMSLNLDDNEIGDDGTA 496
Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
AL LT L+L RI +GA +L L L++ + G + + + LT LN
Sbjct: 497 ALAQHPRLTSLNLASNRIGPTGAQHLAKSATLTELDLSENRIGPEGAEALSLSTVLTTLN 556
Query: 427 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 466
+S N T L SL+ N+R+ AG + L+
Sbjct: 557 VSGNAIGEAGARAFAEKSTSLTSLDARNNRMGEAGAKMLE 596
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 99/348 (28%), Positives = 152/348 (43%), Gaps = 50/348 (14%)
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
LKSL ++ ++ G L LT L+L GC + +L+ S+ L+L+ +
Sbjct: 193 LKSLSLNGIEIDAEGARLLATCASLTSLSLTGCSIGDRAATALAQSRSIASLDLSVNMIG 252
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
DG + L LNL N I DE + L L+SLN + GIGD G++
Sbjct: 253 PDGARALAG-APLVSLNLHNNGIGDEGALALATSGTLKSLNASNNGIGDAGVLGFADNTV 311
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
L L L+ +G +G R L T+L ++LS + D + LAG SL SLN+ +I
Sbjct: 312 LTQLNLAGNMIGPAGARALRRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNVRNNEIG 371
Query: 362 DTGLAAL---TSL---------------------TGLTHLDLFGARITDSGAAYLRNFKN 397
D G AL T+L T L+ LDL I GA+ L +
Sbjct: 372 DDGTEALARNTTLKSLNLSYNRIGLQGAGALGGNTTLSELDLRACAIDPYGASALARNTS 431
Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG-------------- 443
+ SL + + D+G + I + +LTLL+LS+N N+ D ++++G
Sbjct: 432 VASLHLGSNRIGDSGARAIATIRTLTLLDLSRN-NIHDAGAQVLAGNDSLMSLNLDDNEI 490
Query: 444 ----------LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
L SLN++++RI G +HL L L L ++
Sbjct: 491 GDDGTAALAQHPRLTSLNLASNRIGPTGAQHLAKSATLTELDLSENRI 538
>gi|149918767|ref|ZP_01907254.1| hypothetical protein PPSIR1_31833 [Plesiocystis pacifica SIR-1]
gi|149820368|gb|EDM79784.1| hypothetical protein PPSIR1_31833 [Plesiocystis pacifica SIR-1]
Length = 541
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 118/243 (48%), Gaps = 2/243 (0%)
Query: 165 CNC--ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
C+C D + L L L+ L++ S VT +G+ +L L L L GC + +
Sbjct: 294 CDCPRFGDRGLFMLRYLEGLQVLELERSAVTSAGLVHLAENPALEDLTLRGCDLDSEGFT 353
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
+L+AL L L + L D E + SL+ L LG + D L L NLE L+
Sbjct: 354 ALAALPRLRRLIVGPASLLDGKAEGLGLLVSLRELELGLDGFGDRAAQELAPLVNLERLD 413
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
L + + DEGL +L G+ L+ LEL T+V GL HL GL+ LE + L T + D +
Sbjct: 414 LGNTAVSDEGLEHLAGMVRLRELELHHTRVTRHGLEHLQGLSALEILELDHTDVVDEGVA 473
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
LA L +L+ L LD ITD G+A L L+ L L+L +T G L L +
Sbjct: 474 HLAKLGALRELRLDNTLITDVGVAHLAKLSDLERLNLANTVVTSEGVEVLSALPRLEVVN 533
Query: 403 ICG 405
+ G
Sbjct: 534 LAG 536
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/307 (29%), Positives = 138/307 (44%), Gaps = 24/307 (7%)
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS---------------- 188
H ++ + L+SL + +T+ + PL GL +L ++ S
Sbjct: 230 HNTMLRVAKAKSLQSLAV-IDTALTNYSLHPLKGLDHLHRIEWSGQGWSNTSPQYLRDLP 288
Query: 189 -------CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
C + D G+ L+ L+ L +L LE VT+A L L+ +L L L C L
Sbjct: 289 IDELICDCPRFGDRGLFMLRYLEGLQVLELERSAVTSAGLVHLAENPALEDLTLRGCDLD 348
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
+G + + L+ L +G + D L L +L L L G GD L L N
Sbjct: 349 SEGFTALAALPRLRRLIVGPASLLDGKAEGLGLLVSLRELELGLDGFGDRAAQELAPLVN 408
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
L+ L+L +T V GL HL+G+ L + L T ++ L L GLS+L+ L LD +
Sbjct: 409 LERLDLGNTAVSDEGLEHLAGMVRLRELELHHTRVTRHGLEHLQGLSALEILELDHTDVV 468
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421
D G+A L L L L L ITD G A+L +L L + +T GV+ + L
Sbjct: 469 DEGVAHLAKLGALRELRLDNTLITDVGVAHLAKLSDLERLNLANTVVTSEGVEVLSALPR 528
Query: 422 LTLLNLS 428
L ++NL+
Sbjct: 529 LEVVNLA 535
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 87/285 (30%), Positives = 139/285 (48%), Gaps = 25/285 (8%)
Query: 98 GLEHL-------RGLSNLTSLSFRRNNAITA----------QGMKAFAGLINLVKLDLER 140
GL+HL +G SN TS + R+ I +G+ L L L+LER
Sbjct: 262 GLDHLHRIEWSGQGWSN-TSPQYLRDLPIDELICDCPRFGDRGLFMLRYLEGLQVLELER 320
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD---SGI 197
GLV+L LE L ++ C+ ++ L+ L L+ L + + + D G+
Sbjct: 321 SAVTSAGLVHLAENPALEDLTLRGCDLDSEG-FTALAALPRLRRLIVGPASLLDGKAEGL 379
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
L L++L L L+G AA L+ L +L L+L +SD+G E + + L+ L
Sbjct: 380 GLLVSLRELE-LGLDGFGDRAA--QELAPLVNLERLDLGNTAVSDEGLEHLAGMVRLREL 436
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
L +T L HL+GL+ LE L LD + DEG+ +L L L+ L L +T + G+
Sbjct: 437 ELHHTRVTRHGLEHLQGLSALEILELDHTDVVDEGVAHLAKLGALRELRLDNTLITDVGV 496
Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
HL+ L++LE +NL+ T ++ + L+ L L+ +NL + D
Sbjct: 497 AHLAKLSDLERLNLANTVVTSEGVEVLSALPRLEVVNLAGTRARD 541
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 115/251 (45%), Gaps = 27/251 (10%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++L S VT +GL+HL + L+ L C + +
Sbjct: 316 LELERSAVTSAGLVHLAENPALEDLTLRGC--------------------------DLDS 349
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+G A A L L +L + + + G L L+ L L + + D + L+ L N
Sbjct: 350 EGFTALAALPRLRRLIVGPASLLDGKAEGLGLLVSLRELELG-LDGFGDRAAQELAPLVN 408
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L+ L + + V+D G+ +L G+ +L L L VT L+ L L +L L L+ +
Sbjct: 409 LERLDLGNTAVSDEGLEHLAGMVRLRELELHHTRVTRHGLEHLQGLSALEILELDHTDVV 468
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
D+G +K+G+L+ L L ITD + HL L++LE LNL + + EG+ L+ L
Sbjct: 469 DEGVAHLAKLGALRELRLDNTLITDVGVAHLAKLSDLERLNLANTVVTSEGVEVLSALPR 528
Query: 302 LKCLELSDTQV 312
L+ + L+ T+
Sbjct: 529 LEVVNLAGTRA 539
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 99/376 (26%), Positives = 149/376 (39%), Gaps = 54/376 (14%)
Query: 156 KLESLNIKWCNCITDSDMKPLSG-LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG- 213
+L +L I C + + L L+ + I VT + ++ L GL L L +
Sbjct: 122 RLTALRISGCQGAVHAGLSAFGARLRELELVDIELDAVTVARLSQLHGLDTLILTRVRAE 181
Query: 214 -------------CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE-------KFSKIGS 253
VT LD SA+ L L + L +G + +K S
Sbjct: 182 AEALNPLARKISPSTVTLRELDKDSAVVELVTLLRDLHHLRLEGAWVGHNTMLRVAKAKS 241
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-----------------------IGD 290
L+ L + +T+ L LKGL +L + G GD
Sbjct: 242 LQSLAVIDTALTNYSLHPLKGLDHLHRIEWSGQGWSNTSPQYLRDLPIDELICDCPRFGD 301
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
GL L L L+ LEL + V S+GL HL+ LE + L + LA L L
Sbjct: 302 RGLFMLRYLEGLQVLELERSAVTSAGLVHLAENPALEDLTLRGCDLDSEGFTALAALPRL 361
Query: 351 KSLNLDARQITD---TGLAALTSLTGLT-HLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
+ L + + D GL L SL L LD FG D A L NL L++
Sbjct: 362 RRLIVGPASLLDGKAEGLGLLVSLRELELGLDGFG----DRAAQELAPLVNLERLDLGNT 417
Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 466
++D G++H+ + L L L + +T LE + GL+ L L + ++ + G+ HL
Sbjct: 418 AVSDEGLEHLAGMVRLRELEL-HHTRVTRHGLEHLQGLSALEILELDHTDVVDEGVAHLA 476
Query: 467 PLKNLRSLTLESCKVT 482
L LR L L++ +T
Sbjct: 477 KLGALRELRLDNTLIT 492
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 91/347 (26%), Positives = 145/347 (41%), Gaps = 34/347 (9%)
Query: 172 DMKPLSGLT-NLKSLQIS-CSKVTDSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
D+ L+ T L +L+IS C +G+ A+ L++L L+++E VT A L L L
Sbjct: 112 DLHALAEATPRLTALRISGCQGAVHAGLSAFGARLRELELVDIELDAVTVARLSQLHGLD 171
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI-TDECLVHL-KGLTNLESLNLDSC 286
+L L R + + ++ S + L E+ D +V L L +L L L+
Sbjct: 172 TLI---LTRVRAEAEALNPLARKISPSTVTL--RELDKDSAVVELVTLLRDLHHLRLEGA 226
Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS--------- 337
+G ++ + +L+ L + DT + + L L GL +L I S G S
Sbjct: 227 WVGHNTMLRVAKAKSLQSLAVIDTALTNYSLHPLKGLDHLHRIEWSGQGWSNTSPQYLRD 286
Query: 338 --------------DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
D L L L L+ L L+ +T GL L L L L G
Sbjct: 287 LPIDELICDCPRFGDRGLFMLRYLEGLQVLELERSAVTSAGLVHLAENPALEDLTLRGCD 346
Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
+ G L LR L + L D + + L SL L L + D+ + ++
Sbjct: 347 LDSEGFTALAALPRLRRLIVGPASLLDGKAEGLGLLVSLRELELGLD-GFGDRAAQELAP 405
Query: 444 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 490
L L L++ N+ ++ GL HL + LR L L +VT + ++ LQ
Sbjct: 406 LVNLERLDLGNTAVSDEGLEHLAGMVRLRELELHHTRVTRHGLEHLQ 452
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 84/193 (43%), Gaps = 44/193 (22%)
Query: 22 EVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCS 81
E+ L+ F D A Q+L P VN L +DL + V+D GL HL
Sbjct: 389 ELGLDGFGDRAAQELA----PLVN-------------LERLDLGNTAVSDEGLEHLAGMV 431
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
L+ L+ + +++ GLEHL+GLS L L + + G+ +L KL R
Sbjct: 432 RLRELELHHT-RVTRHGLEHLQGLSALEILELDHTDVVD-------EGVAHLAKLGALRE 483
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
R+ L ITD + L+ L++L+ L ++ + VT G+ L
Sbjct: 484 LRLDNTL-------------------ITDVGVAHLAKLSDLERLNLANTVVTSEGVEVLS 524
Query: 202 GLQKLTLLNLEGC 214
L +L ++NL G
Sbjct: 525 ALPRLEVVNLAGT 537
>gi|54294508|ref|YP_126923.1| hypothetical protein lpl1579 [Legionella pneumophila str. Lens]
gi|53754340|emb|CAH15819.1| hypothetical protein lpl1579 [Legionella pneumophila str. Lens]
Length = 464
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 104/334 (31%), Positives = 161/334 (48%), Gaps = 2/334 (0%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
+++SLN++ N I D K L+ +L +L + + + D G L Q L+ LNL
Sbjct: 45 EIKSLNLR-NNNIGDEGAKALAANQSLSTLNLRANNIGDEGAKALAANQSLSTLNLSYNN 103
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+ A +L+A SL LNL + D+G + + SL LNL +N I DE L
Sbjct: 104 IGAEGAKALAANQSLSTLNLRANNIGDEGAKALAANQSLSTLNLRYNNIGDEGAKALAAN 163
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
+L +LNL + IGDEG L +L L LS + + G + L+ +L ++NL +
Sbjct: 164 QSLSTLNLRNNNIGDEGAKALAANQSLSTLNLSYNNIRAEGAKALAANQSLSTLNLRYNN 223
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
I + LA SL +LNL I D G AL + L+ L+L I D GA L
Sbjct: 224 IRAEGAKALAANQSLSTLNLSYNNIGDEGAKALAANQSLSTLNLSYNNIGDEGAKALAAN 283
Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 455
++L +L + + D G K + SL+ LNLS N N+ + + ++ L +LN+S +
Sbjct: 284 QSLSTLNLSYNNIGDEGAKALAANQSLSTLNLSYN-NIRAEGAKALAANQSLSTLNLSYN 342
Query: 456 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
I G + L ++L +L L + A K L
Sbjct: 343 NIGDEGAKALAANQSLSTLNLSYNNIRAEGAKAL 376
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 107/337 (31%), Positives = 156/337 (46%), Gaps = 2/337 (0%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I D G + L +L++L+ R NN I +G KA A +L L+L G L
Sbjct: 56 IGDEGAKALAANQSLSTLNLRANN-IGDEGAKALAANQSLSTLNLSYNNIGAEGAKALAA 114
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L +LN++ N I D K L+ +L +L + + + D G L Q L+ LNL
Sbjct: 115 NQSLSTLNLR-ANNIGDEGAKALAANQSLSTLNLRYNNIGDEGAKALAANQSLSTLNLRN 173
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ +L+A SL LNL+ + +G + + SL LNL +N I E L
Sbjct: 174 NNIGDEGAKALAANQSLSTLNLSYNNIRAEGAKALAANQSLSTLNLRYNNIRAEGAKALA 233
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
+L +LNL IGDEG L +L L LS +G G + L+ +L ++NLS+
Sbjct: 234 ANQSLSTLNLSYNNIGDEGAKALAANQSLSTLNLSYNNIGDEGAKALAANQSLSTLNLSY 293
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
I D + LA SL +LNL I G AL + L+ L+L I D GA L
Sbjct: 294 NNIGDEGAKALAANQSLSTLNLSYNNIRAEGAKALAANQSLSTLNLSYNNIGDEGAKALA 353
Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
++L +L + + G K + SL+ LNLS N
Sbjct: 354 ANQSLSTLNLSYNNIRAEGAKALAANQSLSTLNLSYN 390
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 143/309 (46%), Gaps = 1/309 (0%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL + +++ + + + +L ++ LNL + +L+A SL LNL +
Sbjct: 21 NLSNQKLNAQDIKELIVPFLNTNPEIKSLNLRNNNIGDEGAKALAANQSLSTLNLRANNI 80
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D+G + + SL LNL +N I E L +L +LNL + IGDEG L
Sbjct: 81 GDEGAKALAANQSLSTLNLSYNNIGAEGAKALAANQSLSTLNLRANNIGDEGAKALAANQ 140
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
+L L L +G G + L+ +L ++NL I D + LA SL +LNL I
Sbjct: 141 SLSTLNLRYNNIGDEGAKALAANQSLSTLNLRNNNIGDEGAKALAANQSLSTLNLSYNNI 200
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
G AL + L+ L+L I GA L ++L +L + + D G K +
Sbjct: 201 RAEGAKALAANQSLSTLNLRYNNIRAEGAKALAANQSLSTLNLSYNNIGDEGAKALAANQ 260
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
SL+ LNLS N N+ D+ + ++ L +LN+S + I G + L ++L +L L
Sbjct: 261 SLSTLNLSYN-NIGDEGAKALAANQSLSTLNLSYNNIGDEGAKALAANQSLSTLNLSYNN 319
Query: 481 VTANDIKRL 489
+ A K L
Sbjct: 320 IRAEGAKAL 328
>gi|207743293|ref|YP_002259685.1| type III effector gala6 protein [Ralstonia solanacearum IPO1609]
gi|206594690|emb|CAQ61617.1| type III effector gala6 protein [Ralstonia solanacearum IPO1609]
Length = 625
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 136/460 (29%), Positives = 211/460 (45%), Gaps = 10/460 (2%)
Query: 11 FNELVYSRCLTEVSLEAFR--DCALQDLCLGQY--PGVNDKWMDVIASQGSSLLSVDLSG 66
+ L R E++LEA + ++ L +G+ GV++ + ++A++ L S+ L+G
Sbjct: 139 YPALKSVRFKGELTLEALKALPPGVEHLEIGRSTGSGVSNAGLALLATR--PLKSLSLNG 196
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++ G L C++L SL C I D L ++ SL N I G +A
Sbjct: 197 IEIDAEGARLLATCASLTSLSLTGC-SIGDRAATALAQSRSIASLDLSVN-MIGPDGARA 254
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
AG LV L+L G + L L+SLN N I D+ + + T L L
Sbjct: 255 LAG-APLVSLNLHNNGIGDEGALALATSGTLKSLNAS-NNGIGDAGVLGFADNTVLTQLN 312
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
++ + + +G L+ LT L+L + A L+ SL LN+ ++ DDG E
Sbjct: 313 LAGNMIGPAGARALRRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNVRNNEIGDDGTE 372
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
++ +LK LNL +N I + L G T L L+L +C I G L ++ L
Sbjct: 373 ALARNTTLKSLNLSYNRIGLQGAGALGGNTTLSELDLRACAIDPYGASALARNTSVASLH 432
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
L ++G SG R ++ + L ++LS I D + LAG SL SLNLD +I D G A
Sbjct: 433 LGSNRIGDSGARAIATIRTLTLLDLSRNNIHDAGAQVLAGNDSLMSLNLDDNEIGDDGTA 492
Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
AL LT L+L RI +GA +L L L++ + G + + + LT LN
Sbjct: 493 ALAQHPRLTSLNLASNRIGPTGAQHLAKSATLTELDLSENRIGPEGAEALSLSTVLTTLN 552
Query: 427 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 466
+S N T L SL+ N+R+ AG + L+
Sbjct: 553 VSGNAIGEAGARAFAEKSTSLTSLDARNNRMGEAGAKMLE 592
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 99/348 (28%), Positives = 152/348 (43%), Gaps = 50/348 (14%)
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
LKSL ++ ++ G L LT L+L GC + +L+ S+ L+L+ +
Sbjct: 189 LKSLSLNGIEIDAEGARLLATCASLTSLSLTGCSIGDRAATALAQSRSIASLDLSVNMIG 248
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
DG + L LNL N I DE + L L+SLN + GIGD G++
Sbjct: 249 PDGARALAG-APLVSLNLHNNGIGDEGALALATSGTLKSLNASNNGIGDAGVLGFADNTV 307
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
L L L+ +G +G R L T+L ++LS + D + LAG SL SLN+ +I
Sbjct: 308 LTQLNLAGNMIGPAGARALRRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNVRNNEIG 367
Query: 362 DTGLAAL---TSL---------------------TGLTHLDLFGARITDSGAAYLRNFKN 397
D G AL T+L T L+ LDL I GA+ L +
Sbjct: 368 DDGTEALARNTTLKSLNLSYNRIGLQGAGALGGNTTLSELDLRACAIDPYGASALARNTS 427
Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG-------------- 443
+ SL + + D+G + I + +LTLL+LS+N N+ D ++++G
Sbjct: 428 VASLHLGSNRIGDSGARAIATIRTLTLLDLSRN-NIHDAGAQVLAGNDSLMSLNLDDNEI 486
Query: 444 ----------LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
L SLN++++RI G +HL L L L ++
Sbjct: 487 GDDGTAALAQHPRLTSLNLASNRIGPTGAQHLAKSATLTELDLSENRI 534
>gi|156406568|ref|XP_001641117.1| predicted protein [Nematostella vectensis]
gi|156228254|gb|EDO49054.1| predicted protein [Nematostella vectensis]
Length = 803
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 124/423 (29%), Positives = 188/423 (44%), Gaps = 79/423 (18%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL- 130
+G HL+ L L N C +I +S L + A+T + + AF
Sbjct: 416 AGQRHLQPLVTLGVLPHNVCDKI----------ISRLVE-----DKALTPKVLHAFISCC 460
Query: 131 INLVKLDLERCTRIHGG--LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
+ +KLD C + L L+ +L L+IK C ITD ++ + L L +LQ+
Sbjct: 461 LRYIKLD---CYLLVTNDLLAELRFHRQLVHLSIKSCPIITDKALEAVVDLPALTTLQLD 517
Query: 189 CSKVTDSGIAYLKG----LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
+K++D G+ Y G +Q L L+L G VT SL+ L L L +++
Sbjct: 518 NTKISDKGLMYFSGHANCIQTLVHLSLNGTGVTNQGTASLADWKILRILGLENTKIT--S 575
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
+ + LK LN+ F +TDECLV L +L SLN+ + D GL +L GL L
Sbjct: 576 LDVIRHLQHLKTLNVAFTGVTDECLVALNSHPSLSSLNILQTSVTDRGLQHLKGL-PLSS 634
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
L+LSD + I+D ++ +AG++SL L L ++TD G
Sbjct: 635 LDLSD-----------------------YRNITDSGVQYIAGMTSLTRLLLSNTRLTDEG 671
Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA------------- 411
+ L+ L L L++ +TD G+ L NF NL+ L + G+TD
Sbjct: 672 MVQLSGLAKLVELNVDRTVVTDKGSRVLSNFANLQILGLSSTGVTDKLLRDGVLNRCKKL 731
Query: 412 -------------GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
G+KH+ +L+SLTLLNL D L L++G L +L +SN
Sbjct: 732 CKLNLSRTSVTNRGIKHL-ELNSLTLLNLDWTRVTADCGL-LLTGCPALKALRMSNCTPP 789
Query: 459 SAG 461
S G
Sbjct: 790 SPG 792
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 94/304 (30%), Positives = 152/304 (50%), Gaps = 51/304 (16%)
Query: 182 LKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCPV-TAACLDSLSALGSLFYLNLNRCQ 239
L+ +++ C VT+ +A L+ ++L L+++ CP+ T L+++ L +L L L+ +
Sbjct: 461 LRYIKLDCYLLVTNDLLAELRFHRQLVHLSIKSCPIITDKALEAVVDLPALTTLQLDNTK 520
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
+SD G FS H + L L+L+ G+ ++G +L
Sbjct: 521 ISDKGLMYFSG--------------------HANCIQTLVHLSLNGTGVTNQGTASLADW 560
Query: 300 CNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L+ L L +T++ S +RHL +L+++N++FTG++D L L SL SLN+
Sbjct: 561 KILRILGLENTKITSLDVIRHLQ---HLKTLNVAFTGVTDECLVALNSHPSLSSLNILQT 617
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
+TD GL L L L+ LDL +++N+ TD+GV++I
Sbjct: 618 SVTDRGLQHLKGLP-LSSLDL-------------SDYRNI----------TDSGVQYIAG 653
Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 478
++SLT L LS N LTD+ + +SGL LV LNV + +T G R L NL+ L L S
Sbjct: 654 MTSLTRLLLS-NTRLTDEGMVQLSGLAKLVELNVDRTVVTDKGSRVLSNFANLQILGLSS 712
Query: 479 CKVT 482
VT
Sbjct: 713 TGVT 716
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 113/388 (29%), Positives = 176/388 (45%), Gaps = 54/388 (13%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LP ++ +I + LV + LT L AF C L+ + L Y LL
Sbjct: 429 VLPHNVCDKIISRLVEDKALTPKVLHAFISCCLRYIKLDCY-----------------LL 471
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
VT+ L L+ L L C I+D LE + L LT+L N I+
Sbjct: 472 --------VTNDLLAELRFHRQLVHLSIKSCPIITDKALEAVVDLPALTTLQLD-NTKIS 522
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+G+ F+G N ++ T +H ++L G +T+ L+
Sbjct: 523 DKGLMYFSGHANCIQ------TLVH---LSLNG------------TGVTNQGTASLADWK 561
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
L+ L + +K+T + ++ LQ L LN+ VT CL +L++ SL LN+ + +
Sbjct: 562 ILRILGLENTKIT--SLDVIRHLQHLKTLNVAFTGVTDECLVALNSHPSLSSLNILQTSV 619
Query: 241 SDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
+D G + + L L+L + ITD + ++ G+T+L L L + + DEG+V L+GL
Sbjct: 620 TDRGLQHLKGL-PLSSLDLSDYRNITDSGVQYIAGMTSLTRLLLSNTRLTDEGMVQLSGL 678
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK--LAGLSSLKSLNLDA 357
L L + T V G R LS NL+ + LS TG++D LR L L LNL
Sbjct: 679 AKLVELNVDRTVVTDKGSRVLSNFANLQILGLSSTGVTDKLLRDGVLNRCKKLCKLNLSR 738
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARIT 385
+T+ G+ L L LT L+L R+T
Sbjct: 739 TSVTNRGIKHL-ELNSLTLLNLDWTRVT 765
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 108/208 (51%), Gaps = 7/208 (3%)
Query: 41 YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
+ GV D+ + + S SL S+++ + VTD GL HLK L SLD + I+D G++
Sbjct: 592 FTGVTDECLVALNSH-PSLSSLNILQTSVTDRGLQHLKGLP-LSSLDLSDYRNITDSGVQ 649
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
++ G+++LT L N +T +GM +GL LV+L+++R G L L+ L
Sbjct: 650 YIAGMTSLTRL-LLSNTRLTDEGMVQLSGLAKLVELNVDRTVVTDKGSRVLSNFANLQIL 708
Query: 161 NIKWCNCITDSDMKP--LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+ +TD ++ L+ L L +S + VT+ GI +L+ L LTLLNL+ VTA
Sbjct: 709 GLS-STGVTDKLLRDGVLNRCKKLCKLNLSRTSVTNRGIKHLE-LNSLTLLNLDWTRVTA 766
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCE 246
C L+ +L L ++ C G E
Sbjct: 767 DCGLLLTGCPALKALRMSNCTPPSPGDE 794
>gi|290997674|ref|XP_002681406.1| predicted protein [Naegleria gruberi]
gi|284095030|gb|EFC48662.1| predicted protein [Naegleria gruberi]
Length = 426
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 115/449 (25%), Positives = 205/449 (45%), Gaps = 32/449 (7%)
Query: 35 DLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQI 94
D+ Q V K++ S+ L S+D+ + + G + L SLD QI
Sbjct: 8 DIGENQIGAVGAKFI----SEMKQLTSLDIIYNRIGAVGAKLISKMKQLTSLDIGGN-QI 62
Query: 95 SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154
D G + + + LTSLS NN I A G + + + L LD+ C
Sbjct: 63 GDEGAKFISEMKQLTSLSIY-NNLIGAVGFEFISEMKQLTSLDI--C------------- 106
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
N I D +K + + L SL I +++ D G+ ++ +++LT L++
Sbjct: 107 ----------YNEIGDEGVKSICEMKQLTSLSIYNNRIGDEGVKFISEMKQLTSLDINNN 156
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
+ S+ + L L++ Q G + S++ L L++ NEI E +
Sbjct: 157 RIGVQGAKSICEMKQLTSLSIYNNQTGAVGAKFISEMKQLTSLDISVNEIGVEGAKFISE 216
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
+ L SLN+ IG EG+ ++ + L L++ ++G G + +S + L S+N+
Sbjct: 217 MKQLTSLNICYNRIGAEGVKLISEMKQLTSLDIGGNEIGDEGAKFISEMKQLTSLNICEN 276
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
I D + ++ + L SL +I G ++ + LT L++ +I D GA +
Sbjct: 277 QIGDEGAKSISEMKQLTSLGAYNNEIGVEGTKLISEMKQLTSLNISKNQIGDEGAKLISE 336
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
K L SL+I + D GVK I ++ L LN+S+N + D+ +LIS + L SL++
Sbjct: 337 MKQLASLDIYYNEIGDEGVKLISEMKQLKSLNISKN-QIGDEGAKLISEMKQLTSLDIHF 395
Query: 455 SRITSAGLRHLKPLKNLRSLTLESCKVTA 483
+ I G++ + +K L SL++ + K+ +
Sbjct: 396 NEIGDEGVKLISEMKQLTSLSIYNQKMKS 424
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 145/296 (48%), Gaps = 1/296 (0%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ LKSL I +++ G ++ +++LT L++ + A +S + L L++
Sbjct: 1 MKQLKSLDIGENQIGAVGAKFISEMKQLTSLDIIYNRIGAVGAKLISKMKQLTSLDIGGN 60
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
Q+ D+G + S++ L L++ N I + + L SL++ IGDEG+ ++
Sbjct: 61 QIGDEGAKFISEMKQLTSLSIYNNLIGAVGFEFISEMKQLTSLDICYNEIGDEGVKSICE 120
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
+ L L + + ++G G++ +S + L S++++ I + + + L SL++
Sbjct: 121 MKQLTSLSIYNNRIGDEGVKFISEMKQLTSLDINNNRIGVQGAKSICEMKQLTSLSIYNN 180
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
Q G ++ + LT LD+ I GA ++ K L SL IC + GVK I +
Sbjct: 181 QTGAVGAKFISEMKQLTSLDISVNEIGVEGAKFISEMKQLTSLNICYNRIGAEGVKLISE 240
Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
+ LT L++ N + D+ + IS + L SLN+ ++I G + + +K L SL
Sbjct: 241 MKQLTSLDIGGN-EIGDEGAKFISEMKQLTSLNICENQIGDEGAKSISEMKQLTSL 295
>gi|46447589|ref|YP_008954.1| hypothetical protein pc1955 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401230|emb|CAF24679.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 454
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 97/255 (38%), Positives = 140/255 (54%), Gaps = 19/255 (7%)
Query: 251 IGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLK----- 303
+ ++ LN N + D L+ LK NL+ L+L++C I D+GL +L L +L+
Sbjct: 194 LDEIEALNFSGNAHLADAHLLALKNCENLKLLHLEACQAITDDGLAHLALLTSLQHLNLY 253
Query: 304 -CLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQI 360
C+ L+D +GL HL+ LT L+ +NLS+ I+D L L L+ L+ LNL D +
Sbjct: 254 FCVNLTD-----AGLAHLTPLTALQHLNLSYCWKITDAGLAHLTPLTDLQHLNLSDCENL 308
Query: 361 TDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKD 418
TD GLA LT LT L +L+L +T+ G A+L L+ L + LTDAG H+
Sbjct: 309 TDAGLAHLTPLTALLYLNLSKCYHLTNVGLAHLAPLTGLQYLNLKWCWNLTDAGFSHLAS 368
Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLE 477
L++L L+LS NLTD L ++ LT L L +S R +T GL HL PL L+ L L
Sbjct: 369 LTALQHLDLSDCENLTDAGLAYLASLTALQYLGLSQCRNLTDVGLAHLTPLTALQHLDLR 428
Query: 478 SC-KVTANDIKRLQS 491
C KVT + R ++
Sbjct: 429 ECDKVTDAGLARFKT 443
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 111/315 (35%), Positives = 163/315 (51%), Gaps = 16/315 (5%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
LV LKGL+ + C +D+K LT + +L S++T+ L ++
Sbjct: 145 SLVGLKGLLNFA----QQCQL---NDLKNYLELTVVSALLNQASQLTEFQRIINHFLDEI 197
Query: 207 TLLNLEG-CPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NE 263
LN G + A L +L +L L+L CQ ++DDG + + SL+ LNL F
Sbjct: 198 EALNFSGNAHLADAHLLALKNCENLKLLHLEACQAITDDGLAHLALLTSLQHLNLYFCVN 257
Query: 264 ITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLS 321
+TD L HL LT L+ LNL C I D GL +LT L +L+ L LSD + + +GL HL+
Sbjct: 258 LTDAGLAHLTPLTALQHLNLSYCWKITDAGLAHLTPLTDLQHLNLSDCENLTDAGLAHLT 317
Query: 322 GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL 379
LT L +NLS +++ L LA L+ L+ LNL +TD G + L SLT L HLDL
Sbjct: 318 PLTALLYLNLSKCYHLTNVGLAHLAPLTGLQYLNLKWCWNLTDAGFSHLASLTALQHLDL 377
Query: 380 FGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
+TD+G AYL + L+ L + LTD G+ H+ L++L L+L + +TD
Sbjct: 378 SDCENLTDAGLAYLASLTALQYLGLSQCRNLTDVGLAHLTPLTALQHLDLRECDKVTDAG 437
Query: 438 LELISGLTGLVSLNV 452
L L ++L +
Sbjct: 438 LARFKTLATSLNLKI 452
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 107/190 (56%), Gaps = 4/190 (2%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL + LQ L+ ++C +I+D GL HL L++L L+ +T G+
Sbjct: 257 NLTDAGLAHLTPLTALQHLNLSYCWKITDAGLAHLTPLTDLQHLNLSDCENLTDAGLAHL 316
Query: 128 AGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L L+ L+L +C + GL +L L L+ LN+KWC +TD+ L+ LT L+ L
Sbjct: 317 TPLTALLYLNLSKCYHLTNVGLAHLAPLTGLQYLNLKWCWNLTDAGFSHLASLTALQHLD 376
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDD 243
+S C +TD+G+AYL L L L L C +T L L+ L +L +L+L C +++D
Sbjct: 377 LSDCENLTDAGLAYLASLTALQYLGLSQCRNLTDVGLAHLTPLTALQHLDLRECDKVTDA 436
Query: 244 GCEKFSKIGS 253
G +F + +
Sbjct: 437 GLARFKTLAT 446
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 135/256 (52%), Gaps = 9/256 (3%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
+++L+F+ ++D L L+ NL L AIT G+ A L +L L+L C
Sbjct: 197 IEALNFSGNAHLADAHLLALKNCENLKLLHLEACQAITDDGLAHLALLTSLQHLNLYFCV 256
Query: 143 RI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL 200
+ GL +L L L+ LN+ +C ITD+ + L+ LT+L+ L +S C +TD+G+A+L
Sbjct: 257 NLTDAGLAHLTPLTALQHLNLSYCWKITDAGLAHLTPLTDLQHLNLSDCENLTDAGLAHL 316
Query: 201 KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLN 258
L L LNL C +T L L+ L L YLNL C L+D G + + +L+ L+
Sbjct: 317 TPLTALLYLNLSKCYHLTNVGLAHLAPLTGLQYLNLKWCWNLTDAGFSHLASLTALQHLD 376
Query: 259 LGFNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSS 315
L E +TD L +L LT L+ L L C + D GL +LT L L+ L+L + +V +
Sbjct: 377 LSDCENLTDAGLAYLASLTALQYLGLSQCRNLTDVGLAHLTPLTALQHLDLRECDKVTDA 436
Query: 316 GLRHLSGLTNLESINL 331
GL L S+NL
Sbjct: 437 GLARFKTLAT--SLNL 450
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 87/256 (33%), Positives = 136/256 (53%), Gaps = 10/256 (3%)
Query: 61 SVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
+++ SG + + D+ L+ LK+C NL+ L C I+D GL HL L++L L+ +
Sbjct: 199 ALNFSGNAHLADAHLLALKNCENLKLLHLEACQAITDDGLAHLALLTSLQHLNLYFCVNL 258
Query: 120 TAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
T G+ L L L+L C +I GL +L L L+ LN+ C +TD+ + L+
Sbjct: 259 TDAGLAHLTPLTALQHLNLSYCWKITDAGLAHLTPLTDLQHLNLSDCENLTDAGLAHLTP 318
Query: 179 LTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLN 236
LT L L +S C +T+ G+A+L L L LNL+ C +T A L++L +L +L+L+
Sbjct: 319 LTALLYLNLSKCYHLTNVGLAHLAPLTGLQYLNLKWCWNLTDAGFSHLASLTALQHLDLS 378
Query: 237 RCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGL 293
C+ L+D G + + +L+ L L +TD L HL LT L+ L+L C + D GL
Sbjct: 379 DCENLTDAGLAYLASLTALQYLGLSQCRNLTDVGLAHLTPLTALQHLDLRECDKVTDAGL 438
Query: 294 VNLTGLC---NLKCLE 306
L NLK ++
Sbjct: 439 ARFKTLATSLNLKIIK 454
>gi|329906145|ref|ZP_08274368.1| hypothetical protein IMCC9480_2835 [Oxalobacteraceae bacterium
IMCC9480]
gi|327547327|gb|EGF32161.1| hypothetical protein IMCC9480_2835 [Oxalobacteraceae bacterium
IMCC9480]
Length = 518
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 164/310 (52%), Gaps = 10/310 (3%)
Query: 54 SQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
Q +L +DL+ + + ++ L+HL +LQ L+ + C Q++D G+ HL S L L
Sbjct: 186 PQMPALQVLDLTACTTIAEANLVHLAKLPDLQQLNLSSCQQLTDAGVAHLPLASTLQHLD 245
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
+T G++ + L +L LD+ C + G + +MK SLN +C +D+
Sbjct: 246 LSGCQQVTDAGLRGLSALRSLQHLDVHSCRLVTGATLGDFAVMK--SLNAGFCRRFSDAG 303
Query: 173 MKPLSGLTNLKSLQIS-CSKVTDSGIAY-LKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ ++G+ +L+ L+I+ C +T +A L L +L LN G P++ A L +L A GSL
Sbjct: 304 LAAVAGMHDLQQLEITHCVALTRDALATCLPQLTQLQTLNASGTPLSDAPLQALFAQGSL 363
Query: 231 FYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-G 287
L L C+ L++ G + + +L L+L + + L L T LE+L+L C G
Sbjct: 364 QQLVLQHCRALTEPGLAQLATSPALVSLDLRSCRGVVGDALPALGRQTALETLDLSRCSG 423
Query: 288 IGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLA 345
+ + L + L L+ L L ++ +GL HL L L++++L+ G ++DG+LR++A
Sbjct: 424 VTGDDLRHFQSLSKLQTLRLVGCGRINDAGLAHLQALPALKTLDLTDCGYLTDGALRRIA 483
Query: 346 GLSSLKSLNL 355
+L+ L++
Sbjct: 484 HFPALEKLHI 493
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 135/482 (28%), Positives = 213/482 (44%), Gaps = 104/482 (21%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGG------------LE---- 100
S+ ++LSG + +TD+GL HL +L+ +D CIQ++D G LE
Sbjct: 43 SVRRLELSGNTRLTDAGLAHLAGLLSLEHVDLRSCIQVTDAGLATLAALPALHTLELAEQ 102
Query: 101 ------HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE-RCTRIHGGLVNLKG 153
L + L L+ +R IT ++A A NL L++ R L +L+
Sbjct: 103 RDASGAALAQMPQLRHLTLQRCQGITPAALEAVANQANLQHLEISLRRNMTDDELASLRP 162
Query: 154 LMKLESLNIK------------W-------------CNCITDSDMKPLSGLTNLKSLQI- 187
L++L L++ W C I ++++ L+ L +L+ L +
Sbjct: 163 LLQLRHLSLNGSSGFSGSGLEDWPQMPALQVLDLTACTTIAEANLVHLAKLPDLQQLNLS 222
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
SC ++TD+G+A+L L L+L GC VT A L LSAL SL +L+++ C+L
Sbjct: 223 SCQQLTDAGVAHLPLASTLQHLDLSGCQQVTDAGLRGLSALRSLQHLDVHSCRLVTGA-- 280
Query: 247 KFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
+K LN GF +D L + G+ +L+ L + C V LT C
Sbjct: 281 TLGDFAVMKSLNAGFCRRFSDAGLAAVAGMHDLQQLEITHC-------VALTRDALATC- 332
Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTG 364
L LT L+++N S T +SD L+ L SL+ L L R +T+ G
Sbjct: 333 --------------LPQLTQLQTLNASGTPLSDAPLQALFAQGSLQQLVLQHCRALTEPG 378
Query: 365 LAALTSLTGLTHLDLFGAR--ITDSGAAY---------------------LRNFKN---L 398
LA L + L LDL R + D+ A LR+F++ L
Sbjct: 379 LAQLATSPALVSLDLRSCRGVVGDALPALGRQTALETLDLSRCSGVTGDDLRHFQSLSKL 438
Query: 399 RSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
++L + G G + DAG+ H++ L +L L+L+ LTD L I+ L L++ N +
Sbjct: 439 QTLRLVGCGRINDAGLAHLQALPALKTLDLTDCGYLTDGALRRIAHFPALEKLHIRNCHL 498
Query: 458 TS 459
S
Sbjct: 499 IS 500
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 100/376 (26%), Positives = 184/376 (48%), Gaps = 40/376 (10%)
Query: 135 KLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-V 192
+L+L TR+ GL +L GL+ LE ++++ C +TD+ + L+ L L +L+++ +
Sbjct: 46 RLELSGNTRLTDAGLAHLAGLLSLEHVDLRSCIQVTDAGLATLAALPALHTLELAEQRDA 105
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN-RCQLSDDGCEKFSKI 251
+ + +A + L+ LTL +G +T A L++++ +L +L ++ R ++DD +
Sbjct: 106 SGAALAQMPQLRHLTLQRCQG--ITPAALEAVANQANLQHLEISLRRNMTDDELASLRPL 163
Query: 252 GSLKVLNLGFNEITDEC-LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
L+ L+L + L + L+ L+L +C T
Sbjct: 164 LQLRHLSLNGSSGFSGSGLEDWPQMPALQVLDLTAC-----------------------T 200
Query: 311 QVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAAL 368
+ + L HL+ L +L+ +NLS ++D + L S+L+ L+L +Q+TD GL L
Sbjct: 201 TIAEANLVHLAKLPDLQQLNLSSCQQLTDAGVAHLPLASTLQHLDLSGCQQVTDAGLRGL 260
Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE--ICGGGLTDAGVKHIKDLSSLTLLN 426
++L L HLD+ R+ A L +F ++SL C +DAG+ + + L L
Sbjct: 261 SALRSLQHLDVHSCRLVT--GATLGDFAVMKSLNAGFCRR-FSDAGLAAVAGMHDLQQLE 317
Query: 427 LSQNCNLTDKTLEL-ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK-VTAN 484
++ LT L + LT L +LN S + ++ A L+ L +L+ L L+ C+ +T
Sbjct: 318 ITHCVALTRDALATCLPQLTQLQTLNASGTPLSDAPLQALFAQGSLQQLVLQHCRALTEP 377
Query: 485 DIKRLQSRDLPNLVSF 500
+ +L + P LVS
Sbjct: 378 GLAQLATS--PALVSL 391
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 121/239 (50%), Gaps = 13/239 (5%)
Query: 253 SLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT 310
S++ L L G +TD L HL GL +LE ++L SC + D GL L L L LEL++
Sbjct: 43 SVRRLELSGNTRLTDAGLAHLAGLLSLEHVDLRSCIQVTDAGLATLAALPALHTLELAEQ 102
Query: 311 QVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAAL 368
+ S L+ + L + L GI+ +L +A ++L+ L + R+ +TD LA+L
Sbjct: 103 RDASGAA--LAQMPQLRHLTLQRCQGITPAALEAVANQANLQHLEISLRRNMTDDELASL 160
Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG----GGLTDAGVKHIKDLSSLTL 424
L L HL L + + L ++ + +L++ + +A + H+ L L
Sbjct: 161 RPLLQLRHLSL--NGSSGFSGSGLEDWPQMPALQVLDLTACTTIAEANLVHLAKLPDLQQ 218
Query: 425 LNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVT 482
LNLS LTD + + + L L++S ++T AGLR L L++L+ L + SC++
Sbjct: 219 LNLSSCQQLTDAGVAHLPLASTLQHLDLSGCQQVTDAGLRGLSALRSLQHLDVHSCRLV 277
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 3/133 (2%)
Query: 14 LVYSRCLTEVSLEAFR-DCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTD 71
L + R LTE L AL L L GV + + Q ++L ++DLS S VT
Sbjct: 368 LQHCRALTEPGLAQLATSPALVSLDLRSCRGVVGDALPALGRQ-TALETLDLSRCSGVTG 426
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
L H + S LQ+L C +I+D GL HL+ L L +L +T ++ A
Sbjct: 427 DDLRHFQSLSKLQTLRLVGCGRINDAGLAHLQALPALKTLDLTDCGYLTDGALRRIAHFP 486
Query: 132 NLVKLDLERCTRI 144
L KL + C I
Sbjct: 487 ALEKLHIRNCHLI 499
>gi|290980799|ref|XP_002673119.1| predicted protein [Naegleria gruberi]
gi|284086700|gb|EFC40375.1| predicted protein [Naegleria gruberi]
Length = 426
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 105/425 (24%), Positives = 195/425 (45%), Gaps = 44/425 (10%)
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGL--EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
L L++ +NL+ ++ ++GG E L + L L+ N+ I G K L
Sbjct: 5 LPFLENVANLRVIE-------NEGGFNCEILDSMKELKKLNIEFNSKIDPSGFKYICSLE 57
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC--NCITDSDMKPLSGLTNLKSLQISC 189
L L + C + G K L L+SL N I K + + LK L I+
Sbjct: 58 QLTDLYMTFC---YFGFDIAKHLPSLKSLTYLLITGNYIGVEGAKYIGEMKQLKQLHIAN 114
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVT---AACLDSLSALGSLFYLNLNRC-------- 238
+ + G Y+ GL++LT LN+ +T A + + L L + N C
Sbjct: 115 NNIGPEGAKYISGLEQLTFLNIRANEITMDGAKFISEMKQLTGLKIVGNNICDEGAKFIS 174
Query: 239 -------------QLSDDGCEKFSKIGSLKVLNLGFNEITD--ECLVHLKGLTNLESLNL 283
+ ++G + S++ +++ L++GFN I D +C +K LT+L N+
Sbjct: 175 GMKQLTNLDIASNNIGENGAKYVSEMMNIRKLDIGFNSINDGVKCFGEMKQLTDL---NV 231
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
+SC IG +G ++ L L +++ + G H+S + NL +++S I D ++
Sbjct: 232 NSCCIGLDGTKYISSFNQLTHLSIAENLITPYGAIHISQMKNLIKLDISDNRIRDNGVQS 291
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
++ ++ L LN+ + IT G+ + + LT+L + I + A + K+L L I
Sbjct: 292 ISEMNQLTELNVSSIDITPIGIQYICKMDNLTYLIIAHNNIGEKSANQISEMKHLAQLSI 351
Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
+ D G K I ++ LT L++ N + D+ ++ +SG+ L LN ++ I+ G +
Sbjct: 352 YHNAVGDEGAKFISEMEQLTFLDIGYN-EIGDEGVKALSGMKQLTRLNAVDNNISDEGEK 410
Query: 464 HLKPL 468
+++ +
Sbjct: 411 YIREM 415
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 93/392 (23%), Positives = 168/392 (42%), Gaps = 32/392 (8%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
S + SG ++ L L FC D +HL L +LT L N I +G K
Sbjct: 43 SKIDPSGFKYICSLEQLTDLYMTFCYFGFDIA-KHLPSLKSLTYL-LITGNYIGVEGAKY 100
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
+ L +L + G + GL +L LNI+ N IT K +S + L L+
Sbjct: 101 IGEMKQLKQLHIANNNIGPEGAKYISGLEQLTFLNIR-ANEITMDGAKFISEMKQLTGLK 159
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNL-------EGCPVTAACL-------------DSLSA 226
I + + D G ++ G+++LT L++ G + + D +
Sbjct: 160 IVGNNICDEGAKFISGMKQLTNLDIASNNIGENGAKYVSEMMNIRKLDIGFNSINDGVKC 219
Query: 227 LGSLFYL---NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
G + L N+N C + DG + S L L++ N IT +H+ + NL L++
Sbjct: 220 FGEMKQLTDLNVNSCCIGLDGTKYISSFNQLTHLSIAENLITPYGAIHISQMKNLIKLDI 279
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
I D G+ +++ + L L +S + G++++ + NL + ++ I + S +
Sbjct: 280 SDNRIRDNGVQSISEMNQLTELNVSSIDITPIGIQYICKMDNLTYLIIAHNNIGEKSANQ 339
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
++ + L L++ + D G ++ + LT LD+ I D G L K L L
Sbjct: 340 ISEMKHLAQLSIYHNAVGDEGAKFISEMEQLTFLDIGYNEIGDEGVKALSGMKQLTRLNA 399
Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
++D G K+I++ +NL+ + ++ D
Sbjct: 400 VDNNISDEGEKYIRE------MNLADHVDIYD 425
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 123/270 (45%), Gaps = 27/270 (10%)
Query: 245 CEKFSKIGSLKVLNLGFN---------------EITD----------ECLVHLKGLTNLE 279
CE + LK LN+ FN ++TD + HL L +L
Sbjct: 25 CEILDSMKELKKLNIEFNSKIDPSGFKYICSLEQLTDLYMTFCYFGFDIAKHLPSLKSLT 84
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L + IG EG + + LK L +++ +G G +++SGL L +N+ I+
Sbjct: 85 YLLITGNYIGVEGAKYIGEMKQLKQLHIANNNIGPEGAKYISGLEQLTFLNIRANEITMD 144
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
+ ++ + L L + I D G ++ + LT+LD+ I ++GA Y+ N+R
Sbjct: 145 GAKFISEMKQLTGLKIVGNNICDEGAKFISGMKQLTNLDIASNNIGENGAKYVSEMMNIR 204
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L+I + D GVK ++ LT LN++ C D T + IS L L+++ + IT
Sbjct: 205 KLDIGFNSIND-GVKCFGEMKQLTDLNVNSCCIGLDGT-KYISSFNQLTHLSIAENLITP 262
Query: 460 AGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
G H+ +KNL L + ++ N ++ +
Sbjct: 263 YGAIHISQMKNLIKLDISDNRIRDNGVQSI 292
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 89/193 (46%), Gaps = 5/193 (2%)
Query: 288 IGDEGLVN---LTGLCNLKCLELS-DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
I +EG N L + LK L + ++++ SG +++ L L + ++F +
Sbjct: 17 IENEGGFNCEILDSMKELKKLNIEFNSKIDPSGFKYICSLEQLTDLYMTFCYFGFDIAKH 76
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
L L SL L + I G + + L L + I GA Y+ + L L I
Sbjct: 77 LPSLKSLTYLLITGNYIGVEGAKYIGEMKQLKQLHIANNNIGPEGAKYISGLEQLTFLNI 136
Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
+T G K I ++ LT L + N N+ D+ + ISG+ L +L+++++ I G +
Sbjct: 137 RANEITMDGAKFISEMKQLTGLKIVGN-NICDEGAKFISGMKQLTNLDIASNNIGENGAK 195
Query: 464 HLKPLKNLRSLTL 476
++ + N+R L +
Sbjct: 196 YVSEMMNIRKLDI 208
>gi|186701224|gb|ACC91251.1| leucine-rich repeat family protein [Arabidopsis halleri]
Length = 600
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 132/460 (28%), Positives = 216/460 (46%), Gaps = 77/460 (16%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMK 156
G +H ++ ++ R ++I A+ M G +NL+ L+L C RI+ L + GL
Sbjct: 58 GFKH-----SVENIDLRGESSINAEWMAYIGGFVNLISLNLSDCQRINSSTLWPITGLTS 112
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L L++ C +TD+ +K L ++NLK L IS + VT GI+ L L+KL+LL+L G PV
Sbjct: 113 LTELDLSRCWKVTDAGIKHLQSVSNLKKLWISQTGVTKVGISLLASLKKLSLLDLGGLPV 172
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
T L +L AL L YL++ +++ G + +L LNL + +T +
Sbjct: 173 TDHNLIALQALTKLEYLDIWGSNVTNQGAISILQFSNLSFLNLSWTSVTQT-----PNIP 227
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELS------DTQ--------------VGSSG 316
+LE L+++ C I E + + L +LK L LS +T+ V +
Sbjct: 228 HLECLHMNMCTIVSEPKTH-SSLASLKKLVLSGANFSAETEALSFTNKSSITYLDVSKTS 286
Query: 317 LRHLSGLT---NLESINLSFTGISDGSLRKLAGL-SSLKSLNLDARQITDTGLA------ 366
L++ S L NLE ++LS T D S+ +A + +L++LN+ +IT G+
Sbjct: 287 LQNFSFLETMINLEHLDLSSTAFGDDSVGFVACVGENLRNLNVSETKITSAGVGNLAGHV 346
Query: 367 ---------------------------------ALTSLTGLTHLDLFGARITDSGAAYLR 393
+TS+ G + A L+
Sbjct: 347 PQLETFSLSQTFVDDLSILLISTMMPCVKALDLGMTSIRGFILQQSPQEEQAEPSLAALQ 406
Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
+ +L++L + L D + + L+ LT L+L ++ +LTD TL +S L LVSL V
Sbjct: 407 SLTSLKTLSLEHPYLGDTALSALSSLTGLTHLSL-RSTSLTDSTLHHLSSLPNLVSLGVR 465
Query: 454 NSRITSAGLRHLKPLKNLRSLTLESCK-VTANDIKRLQSR 492
++ +TS GL +P K LR+L L+ C +T +DI L R
Sbjct: 466 DAVLTSNGLEKFRPPKRLRTLDLKGCWLLTKDDIAGLCKR 505
>gi|290977929|ref|XP_002671689.1| LRR_RI domain-containing protein [Naegleria gruberi]
gi|284085260|gb|EFC38945.1| LRR_RI domain-containing protein [Naegleria gruberi]
Length = 434
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 160/327 (48%), Gaps = 29/327 (8%)
Query: 179 LTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
NLK L+I + D G + ++ LT LN+ C +T+ + + L L YLN+
Sbjct: 117 FPNLKRLEIGDNQQFGDCGAESISKIKTLTSLNVLDCGITSKGAEFIGLLNGLTYLNIGN 176
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
++ D G + K+ SL VL +G EIT E + + L SL++ S + E +++
Sbjct: 177 NKIMDSGMKFIGKLSSLNVLQIGSTEITSESFKLVGCMKGLTSLSIYSNPVTIEDAKSIS 236
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
+ LK L +S+T + GL++LS LT L +L+L
Sbjct: 237 SIHGLKSLNISNTGISVEGLKYLSALT------------------------LLTNLSLAK 272
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
IT+ GL +++ + +T L L I GA L NLR L I +T G+KHI
Sbjct: 273 NNITNEGLLSISQMKQITKLFLQHNVIDCDGAQLLSTMTNLRLLNISQTKITTEGIKHIT 332
Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 477
L ++T LN+S N L D+ L+L+S + L +L+ N+++TS G +H+ L NL L +
Sbjct: 333 SLKNITSLNISIN-QLNDEALKLVSSMNQLTNLSTHNNKLTSEGAKHISQLNNLTELNIS 391
Query: 478 SCKVT---ANDIKRLQSRDLPNLVSFR 501
S V AN + ++ + + N+ + R
Sbjct: 392 SNPVRIEGANYLNQMTTLKIINVSNCR 418
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 142/285 (49%), Gaps = 2/285 (0%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
G ++ + L SLN+ C IT + + L L L I +K+ DSG+ ++ L L
Sbjct: 135 GAESISKIKTLTSLNVLDCG-ITSKGAEFIGLLNGLTYLNIGNNKIMDSGMKFIGKLSSL 193
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+L + +T+ + + L L++ ++ + + S I LK LN+ I+
Sbjct: 194 NVLQIGSTEITSESFKLVGCMKGLTSLSIYSNPVTIEDAKSISSIHGLKSLNISNTGISV 253
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
E L +L LT L +L+L I +EGL++++ + + L L + G + LS +TNL
Sbjct: 254 EGLKYLSALTLLTNLSLAKNNITNEGLLSISQMKQITKLFLQHNVIDCDGAQLLSTMTNL 313
Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+N+S T I+ ++ + L ++ SLN+ Q+ D L ++S+ LT+L ++T
Sbjct: 314 RLLNISQTKITTEGIKHITSLKNITSLNISINQLNDEALKLVSSMNQLTNLSTHNNKLTS 373
Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
GA ++ NL L I + G ++ +++L ++N+S NC
Sbjct: 374 EGAKHISQLNNLTELNISSNPVRIEGANYLNQMTTLKIINVS-NC 417
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 130/259 (50%), Gaps = 13/259 (5%)
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLGFNEITDECLVH-LKGLTNL 278
+DS +GS F ++N E SK +LK L +G N+ +C + + L
Sbjct: 94 VDSFRVVGSYFIDSIN--------AEIISKSFPNLKRLEIGDNQQFGDCGAESISKIKTL 145
Query: 279 ESLNLDSCGIGDEGLVNLTGLCN-LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
SLN+ CGI +G GL N L L + + ++ SG++ + L++L + + T I+
Sbjct: 146 TSLNVLDCGITSKG-AEFIGLLNGLTYLNIGNNKIMDSGMKFIGKLSSLNVLQIGSTEIT 204
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
S + + + L SL++ + +T +++S+ GL L++ I+ G YL
Sbjct: 205 SESFKLVGCMKGLTSLSIYSNPVTIEDAKSISSIHGLKSLNISNTGISVEGLKYLSALTL 264
Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
L +L + +T+ G+ I + +T L L N D +L+S +T L LN+S ++I
Sbjct: 265 LTNLSLAKNNITNEGLLSISQMKQITKLFLQHNVIDCDGA-QLLSTMTNLRLLNISQTKI 323
Query: 458 TSAGLRHLKPLKNLRSLTL 476
T+ G++H+ LKN+ SL +
Sbjct: 324 TTEGIKHITSLKNITSLNI 342
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 112/452 (24%), Positives = 188/452 (41%), Gaps = 98/452 (21%)
Query: 1 MLPRDISQQIFNELVYSRCLTE---VSLEAF-----RDCALQDLCLGQYPGVNDKWMDVI 52
+ P DI ++I L + L +S + F R A L GQ W+ I
Sbjct: 24 LFPDDICEEIMQWLAWKEVLLNCCLISKQWFTIAKSRYRASIQLTYGQ----EKLWLCFI 79
Query: 53 ASQGSSL-----LSVD---LSGSDVTDS--GLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
Q + + VD + GS DS I K NL+ L+ Q D G E +
Sbjct: 80 KEQQEGISRIFNIGVDSFRVVGSYFIDSINAEIISKSFPNLKRLEIGDNQQFGDCGAESI 139
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
+ LTSL+ + IT++G + F GL+N GL L N
Sbjct: 140 SKIKTLTSLNVL-DCGITSKGAE-FIGLLN--------------------GLTYLNIGN- 176
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
N I DS MK + L++L LQI +++T + ++ LT L++ PVT
Sbjct: 177 ---NKIMDSGMKFIGKLSSLNVLQIGSTEITSESFKLVGCMKGLTSLSIYSNPVTIEDAK 233
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH----------- 271
S+S++ L LN++ +S +G + S + L L+L N IT+E L+
Sbjct: 234 SISSIHGLKSLNISNTGISVEGLKYLSALTLLTNLSLAKNNITNEGLLSISQMKQITKLF 293
Query: 272 -------------LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
L +TNL LN +S T++ + G++
Sbjct: 294 LQHNVIDCDGAQLLSTMTNLRLLN------------------------ISQTKITTEGIK 329
Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
H++ L N+ S+N+S ++D +L+ ++ ++ L +L+ ++T G ++ L LT L+
Sbjct: 330 HITSLKNITSLNISINQLNDEALKLVSSMNQLTNLSTHNNKLTSEGAKHISQLNNLTELN 389
Query: 379 LFGARITDSGAAYLRNFKNLRSLEI--CGGGL 408
+ + GA YL L+ + + C G+
Sbjct: 390 ISSNPVRIEGANYLNQMTTLKIINVSNCRTGI 421
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 373 GLTHLDLFGARITDSGAAYL--RNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLLNLSQ 429
G+ + G+ DS A + ++F NL+ LEI D G + I + +LT LN+
Sbjct: 93 GVDSFRVVGSYFIDSINAEIISKSFPNLKRLEIGDNQQFGDCGAESISKIKTLTSLNV-L 151
Query: 430 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 487
+C +T K E I L GL LN+ N++I +G++ + L +L L + S ++T+ K
Sbjct: 152 DCGITSKGAEFIGLLNGLTYLNIGNNKIMDSGMKFIGKLSSLNVLQIGSTEITSESFK 209
>gi|283778672|ref|YP_003369427.1| hypothetical protein Psta_0882 [Pirellula staleyi DSM 6068]
gi|283437125|gb|ADB15567.1| hypothetical protein Psta_0882 [Pirellula staleyi DSM 6068]
Length = 450
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 138/254 (54%), Gaps = 2/254 (0%)
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
D+G + ++G+++ L+L +++TD L L + ++ L L S + GL L L +
Sbjct: 193 DEGVDHVVQLGNIQWLSLEGSDVTDAVLPKLAKIPEIKRLFLGSTKLSGGGLATLAPLVD 252
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
L+ L L + L+ L L S+ L FT ++D L KL + L +L LDA ++T
Sbjct: 253 LEYLSLKQLPIDDRDLQELPEFPKLMSLGLDFTEVTDAGLTKLPKFAMLDTLWLDATRVT 312
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421
D G+ + ++ L L + ++ G ++L +LR L + G L D ++H+ L +
Sbjct: 313 DEGMLEVAKISTLRSLFMPATQVKGPGFSHLMKLASLRYLSLKGVQLDDVALQHLVGLEN 372
Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
+ +L L + N+TDK +E + G+T L +L +S + +T + L +++L+++ L +V
Sbjct: 373 IEILGLD-HTNVTDKQIEQLVGMTRLKTLWLSKTAVTDGAIESLSKIRSLQTVYLHGSEV 431
Query: 482 TANDIKRLQSRDLP 495
+A+ +RL+ R+LP
Sbjct: 432 SADGAERLR-RELP 444
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 120/238 (50%), Gaps = 4/238 (1%)
Query: 161 NIKWCNC----ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
NI+W + +TD+ + L+ + +K L + +K++ G+A L L L L+L+ P+
Sbjct: 204 NIQWLSLEGSDVTDAVLPKLAKIPEIKRLFLGSTKLSGGGLATLAPLVDLEYLSLKQLPI 263
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
L L L L L+ +++D G K K L L L +TDE ++ + ++
Sbjct: 264 DDRDLQELPEFPKLMSLGLDFTEVTDAGLTKLPKFAMLDTLWLDATRVTDEGMLEVAKIS 323
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
L SL + + + G +L L +L+ L L Q+ L+HL GL N+E + L T +
Sbjct: 324 TLRSLFMPATQVKGPGFSHLMKLASLRYLSLKGVQLDDVALQHLVGLENIEILGLDHTNV 383
Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
+D + +L G++ LK+L L +TD + +L+ + L + L G+ ++ GA LR
Sbjct: 384 TDKQIEQLVGMTRLKTLWLSKTAVTDGAIESLSKIRSLQTVYLHGSEVSADGAERLRR 441
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 119/239 (49%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L N++ L + S VTD+ + L + ++ L L ++ L +L+ L L YL+L +
Sbjct: 202 LGNIQWLSLEGSDVTDAVLPKLAKIPEIKRLFLGSTKLSGGGLATLAPLVDLEYLSLKQL 261
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ D ++ + L L L F E+TD L L L++L LD+ + DEG++ +
Sbjct: 262 PIDDRDLQELPEFPKLMSLGLDFTEVTDAGLTKLPKFAMLDTLWLDATRVTDEGMLEVAK 321
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
+ L+ L + TQV G HL L +L ++L + D +L+ L GL +++ L LD
Sbjct: 322 ISTLRSLFMPATQVKGPGFSHLMKLASLRYLSLKGVQLDDVALQHLVGLENIEILGLDHT 381
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
+TD + L +T L L L +TD L ++L+++ + G ++ G + ++
Sbjct: 382 NVTDKQIEQLVGMTRLKTLWLSKTAVTDGAIESLSKIRSLQTVYLHGSEVSADGAERLR 440
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 89/183 (48%), Gaps = 5/183 (2%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+ D L L + L SL +F +++D GL L + L +L +T +GM A
Sbjct: 263 IDDRDLQELPEFPKLMSLGLDFT-EVTDAGLTKLPKFAMLDTLWLDATR-VTDEGMLEVA 320
Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
+ L L + T++ G G +L L L L++K + D ++ L GL N++ L +
Sbjct: 321 KISTLRSLFMP-ATQVKGPGFSHLMKLASLRYLSLKGVQ-LDDVALQHLVGLENIEILGL 378
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
+ VTD I L G+ +L L L VT ++SLS + SL + L+ ++S DG E+
Sbjct: 379 DHTNVTDKQIEQLVGMTRLKTLWLSKTAVTDGAIESLSKIRSLQTVYLHGSEVSADGAER 438
Query: 248 FSK 250
+
Sbjct: 439 LRR 441
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 93/186 (50%), Gaps = 5/186 (2%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L+ L L Q P ++D+ + + + L+S+ L ++VTD+GL L + L +L +
Sbjct: 253 LEYLSLKQLP-IDDRDLQEL-PEFPKLMSLGLDFTEVTDAGLTKLPKFAMLDTLWLD-AT 309
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+++D G+ + +S L SL F + G L +L L L+ L +L
Sbjct: 310 RVTDEGMLEVAKISTLRSL-FMPATQVKGPGFSHLMKLASLRYLSLKGVQLDDVALQHLV 368
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
GL +E L + N +TD ++ L G+T LK+L +S + VTD I L ++ L + L
Sbjct: 369 GLENIEILGLDHTN-VTDKQIEQLVGMTRLKTLWLSKTAVTDGAIESLSKIRSLQTVYLH 427
Query: 213 GCPVTA 218
G V+A
Sbjct: 428 GSEVSA 433
>gi|290979019|ref|XP_002672232.1| predicted protein [Naegleria gruberi]
gi|284085807|gb|EFC39488.1| predicted protein [Naegleria gruberi]
Length = 426
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 99/395 (25%), Positives = 185/395 (46%), Gaps = 31/395 (7%)
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR---------------- 143
E L + L L+ N+ I G K L L L + C
Sbjct: 26 EILDSMKELKKLNLENNSNIHPSGFKYICSLEQLTDLYMTFCYFRLPIAKHLPSLKSLTY 85
Query: 144 --IHGGLVNLKG------LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
I G + ++G + +L+ L+I N I K +SGL L L I +++T
Sbjct: 86 LLITGNYIGVEGAKYIGEMKQLKQLHIANNN-IGPEGAKHISGLEQLTILNIRANEITVD 144
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G ++ +++LT+LN+ G + +S + L L+++ + ++G + S++ ++
Sbjct: 145 GAKFISEMKQLTVLNIIGNDICDEGAKFISGMKQLTNLDISVNNIGENGAKYVSEMLNIT 204
Query: 256 VLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
LN+GFN I D EC +K LT+L N++S IG G+V ++ L L ++ +
Sbjct: 205 KLNIGFNSINDCVECFGKMKQLTDL---NVNSSCIGLCGIVFISSFNQLTHLSIASNSIS 261
Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
+ H+S + N+ +++S I D ++ ++ ++ L LN+ + IT G+ + +
Sbjct: 262 NYEASHISQMKNVIKLDISDNRIGDNGVQSISEMNQLTELNVSSIDITPIGIQYICKMDN 321
Query: 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
LT+L + I GA + K+L L I + D G K I ++ LT LN+ N +
Sbjct: 322 LTYLIIAHNNIGVKGANQISEMKHLAQLSIYNNAVGDEGAKFISEMEQLTFLNIGSN-EI 380
Query: 434 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 468
D+ ++ +SG+ L LN ++ I+ G +++ +
Sbjct: 381 GDEGVKALSGMKQLTELNTVDNNISEEGENYIREM 415
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 79/340 (23%), Positives = 149/340 (43%), Gaps = 15/340 (4%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
G +++ + L L NN I +G K +GL L L++ G + + +L
Sbjct: 97 GAKYIGEMKQLKQLHIANNN-IGPEGAKHISGLEQLTILNIRANEITVDGAKFISEMKQL 155
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
LNI N I D K +SG+ L +L IS + + ++G Y+ + +T LN+ G
Sbjct: 156 TVLNI-IGNDICDEGAKFISGMKQLTNLDISVNNIGENGAKYVSEMLNITKLNI-GFNSI 213
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
C++ + L LN+N + G S L L++ N I++ H+ + N
Sbjct: 214 NDCVECFGKMKQLTDLNVNSSCIGLCGIVFISSFNQLTHLSIASNSISNYEASHISQMKN 273
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
+ L++ IGD G+ +++ + L L +S + G++++ + NL + ++ I
Sbjct: 274 VIKLDISDNRIGDNGVQSISEMNQLTELNVSSIDITPIGIQYICKMDNLTYLIIAHNNIG 333
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
+++ + L L++ + D G ++ + LT L++ I D G L K
Sbjct: 334 VKGANQISEMKHLAQLSIYNNAVGDEGAKFISEMEQLTFLNIGSNEIGDEGVKALSGMKQ 393
Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
L L +++ G +I+++ NLTD T
Sbjct: 394 LTELNTVDNNISEEGENYIREM------------NLTDHT 421
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 136/310 (43%), Gaps = 25/310 (8%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I G +H+ GL LT L+ R N IT G K + + L L++ G + G
Sbjct: 117 IGPEGAKHISGLEQLTILNIRAN-EITVDGAKFISEMKQLTVLNIIGNDICDEGAKFISG 175
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS------------------ 195
+ +L +L+I N I ++ K +S + N+ L I + + D
Sbjct: 176 MKQLTNLDIS-VNNIGENGAKYVSEMLNITKLNIGFNSINDCVECFGKMKQLTDLNVNSS 234
Query: 196 -----GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
GI ++ +LT L++ ++ +S + ++ L+++ ++ D+G + S+
Sbjct: 235 CIGLCGIVFISSFNQLTHLSIASNSISNYEASHISQMKNVIKLDISDNRIGDNGVQSISE 294
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+ L LN+ +IT + ++ + NL L + IG +G ++ + +L L + +
Sbjct: 295 MNQLTELNVSSIDITPIGIQYICKMDNLTYLIIAHNNIGVKGANQISEMKHLAQLSIYNN 354
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
VG G + +S + L +N+ I D ++ L+G+ L LN I++ G +
Sbjct: 355 AVGDEGAKFISEMEQLTFLNIGSNEIGDEGVKALSGMKQLTELNTVDNNISEEGENYIRE 414
Query: 371 LTGLTHLDLF 380
+ H ++
Sbjct: 415 MNLTDHTGIY 424
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 133/286 (46%), Gaps = 11/286 (3%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L +++ G+D+ D G + L +LD + I + G +++ + N+T L+
Sbjct: 150 SEMKQLTVLNIIGNDICDEGAKFISGMKQLTNLDISVN-NIGENGAKYVSEMLNITKLNI 208
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N+ ++ F + L L++ G+V + +L L+I N I++ +
Sbjct: 209 GFNS--INDCVECFGKMKQLTDLNVNSSCIGLCGIVFISSFNQLTHLSI-ASNSISNYEA 265
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+S + N+ L IS +++ D+G+ + + +LT LN+ +T + + + +L YL
Sbjct: 266 SHISQMKNVIKLDISDNRIGDNGVQSISEMNQLTELNVSSIDITPIGIQYICKMDNLTYL 325
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+ + G + S++ L L++ N + DE + + L LN+ S IGDEG+
Sbjct: 326 IIAHNNIGVKGANQISEMKHLAQLSIYNNAVGDEGAKFISEMEQLTFLNIGSNEIGDEGV 385
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS-FTGISD 338
L+G+ L L D + G + + +NL+ TGI D
Sbjct: 386 KALSGMKQLTELNTVDNNISEEGENY------IREMNLTDHTGIYD 425
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 7/144 (4%)
Query: 344 LAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
L + LK LNL+ I +G + SL LT L + A +L + K+L L
Sbjct: 28 LDSMKELKKLNLENNSNIHPSGFKYICSLEQLTDLYMTFCYFRLPIAKHLPSLKSLTYLL 87
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
I G + G K+I ++ L L+++ N N+ + + ISGL L LN+ + IT G
Sbjct: 88 ITGNYIGVEGAKYIGEMKQLKQLHIANN-NIGPEGAKHISGLEQLTILNIRANEITVDGA 146
Query: 463 RHLKPLKNLRSLTLESCKVTANDI 486
+ + +K L L + NDI
Sbjct: 147 KFISEMKQLTVLN-----IIGNDI 165
>gi|254411467|ref|ZP_05025244.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
gi|196181968|gb|EDX76955.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
Length = 577
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 148/416 (35%), Positives = 214/416 (51%), Gaps = 47/416 (11%)
Query: 67 SDVTD-SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
+D+T SGL +L + S LD N I ++ L GL+NLT L+ NN IT
Sbjct: 171 TDITPLSGLTNLTELS----LDNNQIIDVT-----PLSGLANLTELNLY-NNQITE---V 217
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+ +GL NL +L L VNL GL L L + I D+ PLSGLTNL L
Sbjct: 218 SLSGLTNLTELYLSNNQITE---VNLSGLTNLRRLYLSTNQII---DISPLSGLTNLTEL 271
Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
+ +++ D ++ L GL LT L+L+ + LS L +L L L+ Q+ D
Sbjct: 272 DLKYNQIKD--VSPLSGLTNLTELDLKYNQIKDVS--PLSGLTNLTGLYLSSNQIKD--I 325
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
S + +L +L L N+I D + L GL NL L+L S I D + L+GL NL L
Sbjct: 326 SPLSGLTNLTLLYLSDNKIKD--ISPLSGLINLTGLDLGSNKIKD--ISPLSGLINLTGL 381
Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
+LS ++ + LSGLTNL +L I++ SL +GL++L L L QITD +
Sbjct: 382 DLSSNKI--KDISPLSGLTNLTWFSLDNNQITEVSL---SGLTNLTELYLRNNQITD--V 434
Query: 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
++L+ LT LT L L +ITD + L NL L + +TD + L++LT+L
Sbjct: 435 SSLSELTNLTRLVLNNNQITD--VSPLSGLTNLTVLNLSNNQITDVSLSG---LTNLTVL 489
Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
NLS N +TD + +SGLT L LN+ +++IT + L L NL L L + ++
Sbjct: 490 NLSNN-QITD--VSPLSGLTNLTGLNLISNQITDVSI--LSGLTNLTVLILSNNQI 540
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 146/431 (33%), Positives = 221/431 (51%), Gaps = 46/431 (10%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ ++L ++L + + D + L + +NL L+ + QI D + L GL NLT L
Sbjct: 111 SELTNLTELNLYNNQIKD--VTPLSELTNLTELNL-YNNQIKD--VTPLSGLINLTRL-I 164
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+N IT + +GL NL +L L+ I + L GL L LN+ + N IT+
Sbjct: 165 LFSNQIT--DITPLSGLTNLTELSLDNNQIID--VTPLSGLANLTELNL-YNNQITEVS- 218
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD--SLSALGSLF 231
LSGLTNL L +S +++T+ ++ L L++L L T +D LS L +L
Sbjct: 219 --LSGLTNLTELYLSNNQITEVNLSGLTNLRRLYL-------STNQIIDISPLSGLTNLT 269
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
L+L Q+ D S + +L L+L +N+I D + L GLTNL L L S I D
Sbjct: 270 ELDLKYNQIKD--VSPLSGLTNLTELDLKYNQIKD--VSPLSGLTNLTGLYLSSNQIKD- 324
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
+ L+GL NL L LSD ++ + LSGL NL ++L I D + L+GL +L
Sbjct: 325 -ISPLSGLTNLTLLYLSDNKI--KDISPLSGLINLTGLDLGSNKIKD--ISPLSGLINLT 379
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
L+L + +I D ++ L+ LT LT L +IT+ L NL L + +TD
Sbjct: 380 GLDLSSNKIKD--ISPLSGLTNLTWFSLDNNQITE---VSLSGLTNLTELYLRNNQITD- 433
Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 471
V + +L++LT L L+ N +TD + +SGLT L LN+SN++IT L L NL
Sbjct: 434 -VSSLSELTNLTRLVLNNN-QITD--VSPLSGLTNLTVLNLSNNQITDVSLSG---LTNL 486
Query: 472 RSLTLESCKVT 482
L L + ++T
Sbjct: 487 TVLNLSNNQIT 497
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 137/404 (33%), Positives = 208/404 (51%), Gaps = 41/404 (10%)
Query: 45 NDKWMDVIASQG-SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
N++ +DV G ++L ++L + +T+ L L + + L L N ++ +L
Sbjct: 189 NNQIIDVTPLSGLANLTELNLYNNQITEVSLSGLTNLTELY-LSNNQITEV------NLS 241
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
GL+NL L N I + +GL NL +LDL + +I + L GL L L++K
Sbjct: 242 GLTNLRRLYLSTNQII---DISPLSGLTNLTELDL-KYNQIKD-VSPLSGLTNLTELDLK 296
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+ D+ PLSGLTNL L +S +++ D I+ L GL LTLL L + +
Sbjct: 297 YNQI---KDVSPLSGLTNLTGLYLSSNQIKD--ISPLSGLTNLTLLYLSDNKI--KDISP 349
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
LS L +L L+L ++ D S + +L L+L N+I D + L GLTNL +L
Sbjct: 350 LSGLINLTGLDLGSNKIKD--ISPLSGLINLTGLDLSSNKIKD--ISPLSGLTNLTWFSL 405
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
D+ I + V+L+GL NL L L + Q+ + + LS LTNL + L+ I+D S
Sbjct: 406 DNNQITE---VSLSGLTNLTELYLRNNQI--TDVSSLSELTNLTRLVLNNNQITDVS--P 458
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
L+GL++L LNL QITD L+ LT+ LT L+L +ITD + L NL L +
Sbjct: 459 LSGLTNLTVLNLSNNQITDVSLSGLTN---LTVLNLSNNQITD--VSPLSGLTNLTGLNL 513
Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
+TD + + L++LT+L LS N K + +SGLT L
Sbjct: 514 ISNQITDVSI--LSGLTNLTVLILSNN---QIKDVSPLSGLTNL 552
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 117/338 (34%), Positives = 168/338 (49%), Gaps = 48/338 (14%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+D+ PLSGLTNL L + +++ D + L L LT LNL + LS L +L
Sbjct: 83 TDISPLSGLTNLIGLSLWGNQIKD--VTPLSELTNLTELNLYNNQIKDVT--PLSELTNL 138
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
LNL Q+ D S + +L L L N+ITD + L GLTNL L+LD+ I D
Sbjct: 139 TELNLYNNQIKD--VTPLSGLINLTRLILFSNQITD--ITPLSGLTNLTELSLDNNQIID 194
Query: 291 ----EGLVNLT---------------GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
GL NLT GL NL L LS+ Q+ +LSGLTNL + L
Sbjct: 195 VTPLSGLANLTELNLYNNQITEVSLSGLTNLTELYLSNNQITE---VNLSGLTNLRRLYL 251
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
S I D + L+GL++L L+L QI D ++ L+ LT LT LDL +I D +
Sbjct: 252 STNQIID--ISPLSGLTNLTELDLKYNQIKD--VSPLSGLTNLTELDLKYNQIKD--VSP 305
Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
L NL L + + D + + L++LTLL LS D ++ IS L+GL+ N
Sbjct: 306 LSGLTNLTGLYLSSNQIKD--ISPLSGLTNLTLLYLS------DNKIKDISPLSGLI--N 355
Query: 452 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
++ + S ++ + PL L +LT +++N IK +
Sbjct: 356 LTGLDLGSNKIKDISPLSGLINLT--GLDLSSNKIKDI 391
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 116/236 (49%), Gaps = 30/236 (12%)
Query: 62 VDLSGSDVTDSGLIHLKDCS------NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
++L+G D+ G +KD S NL LD + +I D + L GL+NLT S
Sbjct: 354 INLTGLDL---GSNKIKDISPLSGLINLTGLDLSSN-KIKD--ISPLSGLTNLTWFSLD- 406
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
NN IT + +GL NL +L L + + ++ L +L +L N +D+ P
Sbjct: 407 NNQITE---VSLSGLTNLTELYLR-----NNQITDVSSLSELTNLTRLVLNNNQITDVSP 458
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
LSGLTNL L +S +++TD L GL LT+LNL +T LS L +L LNL
Sbjct: 459 LSGLTNLTVLNLSNNQITD---VSLSGLTNLTVLNLSNNQITDVS--PLSGLTNLTGLNL 513
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
Q++D S + +L VL L N+I D + L GLTNL L L I +
Sbjct: 514 ISNQITD--VSILSGLTNLTVLILSNNQIKD--VSPLSGLTNLRRLYLGDNPIPQQ 565
>gi|168704615|ref|ZP_02736892.1| leucine-rich repeat domain protein [Gemmata obscuriglobus UQM 2246]
Length = 294
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 132/250 (52%), Gaps = 2/250 (0%)
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
GS+ L L +I D L L +L L+L + D GL LT L L LS T+
Sbjct: 47 GSVIELWLEGTKIADADLKELAAFKHLAVLSLYDTQVSDAGLKELTSSKGLTELLLSRTK 106
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
V +GL+ ++ LT+LE + L T ++D + +L L L L L +ITD + L
Sbjct: 107 VTDAGLKDVAKLTHLEKLALDETAVTDAGIGELVPLKRLSELWLMGTKITDAAFKNVAKL 166
Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
GLT L L GA+IT G + SL + G +++AG+K I SL +L LS+ C
Sbjct: 167 KGLTTLRLDGAKITGVGLKQVAAIDGFHSLYLSGTDISEAGLKEIAAFKSLRILQLSE-C 225
Query: 432 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 491
+TD L+ ++ L L +L++ +++T AG++ L LK L+ L L S +VT +K +++
Sbjct: 226 KITDGGLKELAALDKLTTLHLEKTQVTDAGVKSLASLKKLKVLHLTSTQVTDAGVKTIRN 285
Query: 492 RDLPNLVSFR 501
LP + F+
Sbjct: 286 A-LPKCLVFK 294
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 117/227 (51%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I D+D+K L+ +L L + ++V+D+G+ L + LT L L VT A L ++ L
Sbjct: 59 IADADLKELAAFKHLAVLSLYDTQVSDAGLKELTSSKGLTELLLSRTKVTDAGLKDVAKL 118
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
L L L+ ++D G + + L L L +ITD ++ L L +L LD
Sbjct: 119 THLEKLALDETAVTDAGIGELVPLKRLSELWLMGTKITDAAFKNVAKLKGLTTLRLDGAK 178
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
I GL + + L LS T + +GL+ ++ +L + LS I+DG L++LA L
Sbjct: 179 ITGVGLKQVAAIDGFHSLYLSGTDISEAGLKEIAAFKSLRILQLSECKITDGGLKELAAL 238
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
L +L+L+ Q+TD G+ +L SL L L L ++TD+G +RN
Sbjct: 239 DKLTTLHLEKTQVTDAGVKSLASLKKLKVLHLTSTQVTDAGVKTIRN 285
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 119/234 (50%)
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L + +K+ D+ + L + L +L+L V+ A L L++ L L L+R +++D G
Sbjct: 52 LWLEGTKIADADLKELAAFKHLAVLSLYDTQVSDAGLKELTSSKGLTELLLSRTKVTDAG 111
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
+ +K+ L+ L L +TD + L L L L L I D N+ L L
Sbjct: 112 LKDVAKLTHLEKLALDETAVTDAGIGELVPLKRLSELWLMGTKITDAAFKNVAKLKGLTT 171
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
L L ++ GL+ ++ + S+ LS T IS+ L+++A SL+ L L +ITD G
Sbjct: 172 LRLDGAKITGVGLKQVAAIDGFHSLYLSGTDISEAGLKEIAAFKSLRILQLSECKITDGG 231
Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
L L +L LT L L ++TD+G L + K L+ L + +TDAGVK I++
Sbjct: 232 LKELAALDKLTTLHLEKTQVTDAGVKSLASLKKLKVLHLTSTQVTDAGVKTIRN 285
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 127/239 (53%), Gaps = 1/239 (0%)
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
GS+ L L +++D ++ + L VL+L +++D L L L L L
Sbjct: 47 GSVIELWLEGTKIADADLKELAAFKHLAVLSLYDTQVSDAGLKELTSSKGLTELLLSRTK 106
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
+ D GL ++ L +L+ L L +T V +G+ L L L + L T I+D + + +A L
Sbjct: 107 VTDAGLKDVAKLTHLEKLALDETAVTDAGIGELVPLKRLSELWLMGTKITDAAFKNVAKL 166
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
L +L LD +IT GL + ++ G L L G I+++G + FK+LR L++
Sbjct: 167 KGLTTLRLDGAKITGVGLKQVAAIDGFHSLYLSGTDISEAGLKEIAAFKSLRILQLSECK 226
Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 466
+TD G+K + L LT L+L + +TD ++ ++ L L L+++++++T AG++ ++
Sbjct: 227 ITDGGLKELAALDKLTTLHL-EKTQVTDAGVKSLASLKKLKVLHLTSTQVTDAGVKTIR 284
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 121/261 (46%), Gaps = 27/261 (10%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
S++ + L G+ + D+ L L +L L + Q+SD GL+ L LT L R
Sbjct: 48 SVIELWLEGTKIADADLKELAAFKHLAVLSL-YDTQVSDAGLKELTSSKGLTELLLSRTK 106
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+T G+K A L +L KL L+ +TD+ + L
Sbjct: 107 -VTDAGLKDVAKLTHLEKLALDE-------------------------TAVTDAGIGELV 140
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L L L + +K+TD+ + L+ LT L L+G +T L ++A+ L L+
Sbjct: 141 PLKRLSELWLMGTKITDAAFKNVAKLKGLTTLRLDGAKITGVGLKQVAAIDGFHSLYLSG 200
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+S+ G ++ + SL++L L +ITD L L L L +L+L+ + D G+ +L
Sbjct: 201 TDISEAGLKEIAAFKSLRILQLSECKITDGGLKELAALDKLTTLHLEKTQVTDAGVKSLA 260
Query: 298 GLCNLKCLELSDTQVGSSGLR 318
L LK L L+ TQV +G++
Sbjct: 261 SLKKLKVLHLTSTQVTDAGVK 281
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 114/233 (48%), Gaps = 1/233 (0%)
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L LEG + A L L+A L L+L Q+SD G ++ + L L L ++TD
Sbjct: 52 LWLEGTKIADADLKELAAFKHLAVLSLYDTQVSDAGLKELTSSKGLTELLLSRTKVTDAG 111
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
L + LT+LE L LD + D G+ L L L L L T++ + ++++ L L +
Sbjct: 112 LKDVAKLTHLEKLALDETAVTDAGIGELVPLKRLSELWLMGTKITDAAFKNVAKLKGLTT 171
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
+ L I+ L+++A + SL L I++ GL + + L L L +ITD G
Sbjct: 172 LRLDGAKITGVGLKQVAAIDGFHSLYLSGTDISEAGLKEIAAFKSLRILQLSECKITDGG 231
Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
L L +L + +TDAGVK + L L +L+L+ + +TD ++ I
Sbjct: 232 LKELAALDKLTTLHLEKTQVTDAGVKSLASLKKLKVLHLT-STQVTDAGVKTI 283
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 71/138 (51%), Gaps = 3/138 (2%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L G+ +TD+ ++ L +L + +I+ GL+ + + SL + I+ G
Sbjct: 150 LMGTKITDAAFKNVAKLKGLTTLRLDGA-KITGVGLKQVAAIDGFHSL-YLSGTDISEAG 207
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+K A +L L L C GGL L L KL +L+++ +TD+ +K L+ L LK
Sbjct: 208 LKEIAAFKSLRILQLSECKITDGGLKELAALDKLTTLHLEKTQ-VTDAGVKSLASLKKLK 266
Query: 184 SLQISCSKVTDSGIAYLK 201
L ++ ++VTD+G+ ++
Sbjct: 267 VLHLTSTQVTDAGVKTIR 284
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
S+ LSG+D++++GL + +L+ L + C +I+DGGL+ L L LT+L + +T
Sbjct: 195 SLYLSGTDISEAGLKEIAAFKSLRILQLSEC-KITDGGLKELAALDKLTTLHLEKTQ-VT 252
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
G+K+ A L L L L G+ ++
Sbjct: 253 DAGVKSLASLKKLKVLHLTSTQVTDAGVKTIR 284
>gi|290981666|ref|XP_002673551.1| predicted protein [Naegleria gruberi]
gi|284087135|gb|EFC40807.1| predicted protein [Naegleria gruberi]
Length = 438
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 114/432 (26%), Positives = 207/432 (47%), Gaps = 58/432 (13%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
G L S+++ + + + G+ +L +C L S + + IS G +L L LT+L R
Sbjct: 31 GIELTSIEIGYNRIGNEGVKYLSECKELTSANL-YGNNISAEGASYLTKLK-LTNLDIRT 88
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N + A+G K F G ++ +K+ LNI N I K
Sbjct: 89 N-ELGAEGAK-FIGQLSQLKI-----------------------LNI-GVNDICAEGAKY 122
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L L L +L I+C+++ + G + +++LT L++ + ++ +S +G+L L +
Sbjct: 123 LVALNQLTNLGINCNRIGEEGAKSISEMKQLTNLDISNNYIGETGVEYVSEMGNLTTLTI 182
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
L +GC+K K+ L L++ N+I E + + L L +++ I +EG
Sbjct: 183 IENNLRAEGCKKIRKLKQLTRLSIYDNKIGAEGAKFISEMEQLMFLEINNNSIRNEGTEY 242
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
++ L NL L++S ++GS G +H+S L + S+ I+ S L+ L+ L L +
Sbjct: 243 ISQLGNLTELDISHNEIGSEGAKHISQFKQLTCLRFSYNKINAESFEYLSTLTQLTDLRI 302
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
+ I D + ++T+L LT L L G I+D+G K+
Sbjct: 303 CSSSIGDDSIKSITNLKSLTILYLNGNNISDNGC------------------------KN 338
Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
I +L+ LT L+++ N N++D+ + +S LT L L+VS +RI + G ++ +K L+ L
Sbjct: 339 ISELTQLTDLSMALN-NISDEGCKFLSQLTQLTELDVSYNRIGNIGAEYINEMKQLKHLA 397
Query: 476 LESCKVTANDIK 487
++ AN+I+
Sbjct: 398 IQ-----ANNIR 404
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 24/164 (14%)
Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409
L S+ + +I + G+ L+ LT +L+G I+ GA+YL K L +L+I L
Sbjct: 34 LTSIEIGYNRIGNEGVKYLSECKELTSANLYGNNISAEGASYLTKLK-LTNLDIRTNELG 92
Query: 410 DAGVKHIKDLSSLTLL----------------------NLSQNCN-LTDKTLELISGLTG 446
G K I LS L +L NL NCN + ++ + IS +
Sbjct: 93 AEGAKFIGQLSQLKILNIGVNDICAEGAKYLVALNQLTNLGINCNRIGEEGAKSISEMKQ 152
Query: 447 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 490
L +L++SN+ I G+ ++ + NL +LT+ + A K+++
Sbjct: 153 LTNLDISNNYIGETGVEYVSEMGNLTTLTIIENNLRAEGCKKIR 196
>gi|255537779|ref|XP_002509956.1| protein binding protein, putative [Ricinus communis]
gi|223549855|gb|EEF51343.1| protein binding protein, putative [Ricinus communis]
Length = 597
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 111/388 (28%), Positives = 188/388 (48%), Gaps = 33/388 (8%)
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDS 171
R NA+ A+ M L L+L C +I L +L G+ L+ L++ +TD+
Sbjct: 70 LRGENAVDAEWMAYLGAFRYLRYLNLADCNKITSSALWSLTGMTSLKELDLSRSVKVTDA 129
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
++ L +++L+ L+I + +T G+A L L L++L+L G PVT L SL L L
Sbjct: 130 GIRHLLSISSLEILRIPETGLTAKGVALLTSLTNLSVLDLGGLPVTDMALSSLQVLTKLE 189
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
YL+L +S++G L LNLG+ +T L + +LE LNL +C I E
Sbjct: 190 YLDLWGSNISNNGVAVLQLFPKLSFLNLGWTSVT-----RLPSMLSLEYLNLSNCTI--E 242
Query: 292 GLVNLTGLCNLKCLELSDTQV---GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
L+ G + L T+V G++ N+E LSF +S+ SL+ L
Sbjct: 243 SLLEGDGDGDKAPL----TKVILSGATFPNEAEAFYNIEPRFLSFLDVSNSSLQGFYFLH 298
Query: 349 SLK---SLNLDARQITDTGLAALTSL-TGLTHLDLFGARITDSGAAYL-RNFKNLRSLEI 403
+K L+L + + D + A+ + LT+L+L R+T +G A L + L L +
Sbjct: 299 DMKMLEHLDLSSTMMGDDAIEAVACIGANLTNLNLSKTRVTSAGLAILAEHVPKLEYLSL 358
Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD------------KTLELISGLTGLVSLN 451
+ D + +I +SSL +++LS N N+ +L+ + GL+GL SLN
Sbjct: 359 SHALVDDFALSYIGMMSSLKVVDLS-NTNIKGFIRQMGVETNLIPSLKALQGLSGLQSLN 417
Query: 452 VSNSRITSAGLRHLKPLKNLRSLTLESC 479
+ ++++ A + + + L L+L+S
Sbjct: 418 LEHTQVRDAAVAPVSSFQELSHLSLKSA 445
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 117/432 (27%), Positives = 184/432 (42%), Gaps = 93/432 (21%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+T S L L ++L+ LD + ++++D G+ HL +S+L L +TA+G+
Sbjct: 101 ITSSALWSLTGMTSLKELDLSRSVKVTDAGIRHLLSISSLEILRIP-ETGLTAKGVALLT 159
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L NL LDL GGL +TD + L LT L+ L +
Sbjct: 160 SLTNLSVLDL-------GGL------------------PVTDMALSSLQVLTKLEYLDLW 194
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ----LSDDG 244
S ++++G+A L+ KL+ LNL VT L ++ SL YLNL+ C L DG
Sbjct: 195 GSNISNNGVAVLQLFPKLSFLNLGWTSVT-----RLPSMLSLEYLNLSNCTIESLLEGDG 249
Query: 245 --------------------CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
E F I + L + + + L + LE L+L
Sbjct: 250 DGDKAPLTKVILSGATFPNEAEAFYNIEPRFLSFLDVSNSSLQGFYFLHDMKMLEHLDLS 309
Query: 285 SCGIGDEGLVNLTGL-CNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISD---- 338
S +GD+ + + + NL L LS T+V S+GL L+ + LE ++LS + D
Sbjct: 310 STMMGDDAIEAVACIGANLTNLNLSKTRVTSAGLAILAEHVPKLEYLSLSHALVDDFALS 369
Query: 339 --------------------------------GSLRKLAGLSSLKSLNLDARQITDTGLA 366
SL+ L GLS L+SLNL+ Q+ D +A
Sbjct: 370 YIGMMSSLKVVDLSNTNIKGFIRQMGVETNLIPSLKALQGLSGLQSLNLEHTQVRDAAVA 429
Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
++S L+HL L A + D +L + L SL I LT+ G+ + +L +L+
Sbjct: 430 PVSSFQELSHLSLKSASLADETLYHLSSLSKLTSLVIGDAVLTNCGLDLFRPPVALKMLD 489
Query: 427 LSQNCNLTDKTL 438
L LT++ +
Sbjct: 490 LRGCWLLTEEAI 501
>gi|434405931|ref|YP_007148816.1| Leucine Rich Repeat (LRR)-containing protein [Cylindrospermum
stagnale PCC 7417]
gi|428260186|gb|AFZ26136.1| Leucine Rich Repeat (LRR)-containing protein [Cylindrospermum
stagnale PCC 7417]
Length = 451
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 128/396 (32%), Positives = 215/396 (54%), Gaps = 36/396 (9%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++L S+++D + L + +NL +LD +S+ + ++ LSNLT+L+ ++
Sbjct: 76 LNLESSEISD--IKPLSNLTNLTTLD------LSENQISDIKPLSNLTNLTDIDLSSNQI 127
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+K + L NL +DL + + ++K L L +L + + SD+K LS LTN
Sbjct: 128 SDIKVLSNLTNLTDIDLSK-----NQISDIKVLSNLTNLTVLDLSDNQISDIKVLSNLTN 182
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L S+++S ++++D I L L LT+L+L ++ + LS L +L YL+L Q+
Sbjct: 183 LTSVKLSENQISD--IEVLSNLTNLTVLDLGYNQISDIKV--LSNLTNLTYLSLWNNQIG 238
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
D + S + +L L+L N+I+D + L LTNL SL L I D + L+ L N
Sbjct: 239 D--IKVLSNLTNLTSLSLWDNQISD--IKPLSNLTNLTSLYLWDNQISD--IKPLSNLTN 292
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
L L L D Q+ ++ LS LTNL ++LS I G ++ L+ L+SL SL+L QI
Sbjct: 293 LTYLYLWDNQIA--DIKPLSNLTNLTDLDLSKNQI--GDIKPLSNLTSLTSLDLSKNQIA 348
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421
D + L++LT LT L L+ + D L N NL SL++ ++D +K + +L++
Sbjct: 349 D--IKPLSNLTNLTSLSLWRNQSID--IELLSNLTNLTSLDLSENQISD--IKPLSNLTN 402
Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
LT ++LS+N ++D ++ +S LT L L + N+ I
Sbjct: 403 LTDIDLSEN-QISD--IKPLSNLTKLEDLQIQNNPI 435
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 125/359 (34%), Positives = 192/359 (53%), Gaps = 63/359 (17%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
SD+KPLS LTNL +L +S ++++D I L L LT ++L ++ + LS L +L
Sbjct: 84 SDIKPLSNLTNLTTLDLSENQISD--IKPLSNLTNLTDIDLSSNQISDIKV--LSNLTNL 139
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
++L++ Q+SD + S + +L VL+L N+I+D + L LTNL S+ L I D
Sbjct: 140 TDIDLSKNQISD--IKVLSNLTNLTVLDLSDNQISD--IKVLSNLTNLTSVKLSENQISD 195
Query: 291 -EGLVNLT-------------------GLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
E L NLT L NL L L + Q+G ++ LS LTNL S++
Sbjct: 196 IEVLSNLTNLTVLDLGYNQISDIKVLSNLTNLTYLSLWNNQIG--DIKVLSNLTNLTSLS 253
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
L ISD ++ L+ L++L SL L QI+D + L++LT LT+L L+ +I D
Sbjct: 254 LWDNQISD--IKPLSNLTNLTSLYLWDNQISD--IKPLSNLTNLTYLYLWDNQIADIKP- 308
Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN--------CNLTDKT----- 437
L N NL L++ + D +K + +L+SLT L+LS+N NLT+ T
Sbjct: 309 -LSNLTNLTDLDLSKNQIGD--IKPLSNLTSLTSLDLSKNQIADIKPLSNLTNLTSLSLW 365
Query: 438 ------LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT-LESCKVTANDIKRL 489
+EL+S LT L SL++S ++I+ +KPL NL +LT ++ + +DIK L
Sbjct: 366 RNQSIDIELLSNLTNLTSLDLSENQIS-----DIKPLSNLTNLTDIDLSENQISDIKPL 419
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 34/167 (20%)
Query: 48 WMDVIA-----SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
W + IA S ++L +DLS + + D + L + ++L SLD + QI+D ++ L
Sbjct: 299 WDNQIADIKPLSNLTNLTDLDLSKNQIGD--IKPLSNLTSLTSLDLSKN-QIAD--IKPL 353
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L+NLTSLS RN +I ++ + L NL LDL + ++K L L +L
Sbjct: 354 SNLTNLTSLSLWRNQSI---DIELLSNLTNLTSLDLS-----ENQISDIKPLSNLTNL-- 403
Query: 163 KWCNCITD--------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
TD SD+KPLS LT L+ LQI + + D ++
Sbjct: 404 ------TDIDLSENQISDIKPLSNLTKLEDLQIQNNPILDKICPFIP 444
>gi|290972120|ref|XP_002668808.1| predicted protein [Naegleria gruberi]
gi|284082332|gb|EFC36064.1| predicted protein [Naegleria gruberi]
Length = 329
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 158/326 (48%), Gaps = 2/326 (0%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
++ LTSL +N I +G K + + L LD+ G + + L SL+I
Sbjct: 1 MNQLTSLDMH-SNEIGVEGSKYISEMKQLTSLDIYSNEIGVEGAKYISEMKSLTSLDI-H 58
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N I K +S + L SL I +++ G Y+ + +LT L++ + +
Sbjct: 59 SNEIGVEGSKYISEMKQLTSLNIGYNQIGVEGSKYISEMNQLTSLDIHSNEIGVEGSKYI 118
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
S + L LN+ Q+S +G + S + SL L +G+N+I E ++ + L SLN+
Sbjct: 119 SEMKQLTSLNIGYNQISVEGAKYISGMKSLTSLYIGYNQIGVEGSKYISEMKQLTSLNIG 178
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
IG+EG ++G+ +L L + Q+G G +++S + L S+N+ IS + +
Sbjct: 179 HNEIGEEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGHNEISVEGSKYI 238
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
+G+ SL SLN+ QI G ++ + LT L++ I GA Y+ K+L SL I
Sbjct: 239 SGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGYNEIGVEGAKYISGMKSLTSLNIG 298
Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQN 430
+ G K+I ++ LT LN+ N
Sbjct: 299 YNQIGVEGSKYISEMKQLTSLNIGHN 324
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/312 (27%), Positives = 154/312 (49%), Gaps = 1/312 (0%)
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N I K +S + L SL I +++ G Y+ ++ LT L++ + +
Sbjct: 11 SNEIGVEGSKYISEMKQLTSLDIYSNEIGVEGAKYISEMKSLTSLDIHSNEIGVEGSKYI 70
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
S + L LN+ Q+ +G + S++ L L++ NEI E ++ + L SLN+
Sbjct: 71 SEMKQLTSLNIGYNQIGVEGSKYISEMNQLTSLDIHSNEIGVEGSKYISEMKQLTSLNIG 130
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
I EG ++G+ +L L + Q+G G +++S + L S+N+ I + + +
Sbjct: 131 YNQISVEGAKYISGMKSLTSLYIGYNQIGVEGSKYISEMKQLTSLNIGHNEIGEEGAKYI 190
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
+G+ SL SLN+ QI G ++ + LT L++ I+ G+ Y+ K+L SL I
Sbjct: 191 SGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGHNEISVEGSKYISGMKSLTSLNIG 250
Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
+ G K+I ++ LT LN+ N + + + ISG+ L SLN+ ++I G ++
Sbjct: 251 YNQIGVEGSKYISEMKQLTSLNIGYN-EIGVEGAKYISGMKSLTSLNIGYNQIGVEGSKY 309
Query: 465 LKPLKNLRSLTL 476
+ +K L SL +
Sbjct: 310 ISEMKQLTSLNI 321
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 158/310 (50%), Gaps = 15/310 (4%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+D+ +++ G ++ + +L SLD + +I G +++ + LTSL+ N
Sbjct: 28 LTSLDIYSNEIGVEGAKYISEMKSLTSLDIH-SNEIGVEGSKYISEMKQLTSLNIGYN-Q 85
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG------LMKLESLNIKWCNCITDSD 172
I +G K + + L LD IH + ++G + +L SLNI + N I+
Sbjct: 86 IGVEGSKYISEMNQLTSLD------IHSNEIGVEGSKYISEMKQLTSLNIGY-NQISVEG 138
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
K +SG+ +L SL I +++ G Y+ +++LT LN+ + +S + SL
Sbjct: 139 AKYISGMKSLTSLYIGYNQIGVEGSKYISEMKQLTSLNIGHNEIGEEGAKYISGMKSLTS 198
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
LN+ Q+ +G + S++ L LN+G NEI+ E ++ G+ +L SLN+ IG EG
Sbjct: 199 LNIGYNQIGVEGSKYISEMKQLTSLNIGHNEISVEGSKYISGMKSLTSLNIGYNQIGVEG 258
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
++ + L L + ++G G +++SG+ +L S+N+ + I + ++ + L S
Sbjct: 259 SKYISEMKQLTSLNIGYNEIGVEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTS 318
Query: 353 LNLDARQITD 362
LN+ +I +
Sbjct: 319 LNIGHNEIGE 328
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 140/274 (51%), Gaps = 1/274 (0%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+ +LT L++ + +S + L L++ ++ +G + S++ SL L++ N
Sbjct: 1 MNQLTSLDMHSNEIGVEGSKYISEMKQLTSLDIYSNEIGVEGAKYISEMKSLTSLDIHSN 60
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
EI E ++ + L SLN+ IG EG ++ + L L++ ++G G +++S
Sbjct: 61 EIGVEGSKYISEMKQLTSLNIGYNQIGVEGSKYISEMNQLTSLDIHSNEIGVEGSKYISE 120
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
+ L S+N+ + IS + ++G+ SL SL + QI G ++ + LT L++
Sbjct: 121 MKQLTSLNIGYNQISVEGAKYISGMKSLTSLYIGYNQIGVEGSKYISEMKQLTSLNIGHN 180
Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
I + GA Y+ K+L SL I + G K+I ++ LT LN+ N ++ + + IS
Sbjct: 181 EIGEEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGHN-EISVEGSKYIS 239
Query: 443 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
G+ L SLN+ ++I G +++ +K L SL +
Sbjct: 240 GMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNI 273
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 141/285 (49%), Gaps = 3/285 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ SL S+D+ +++ G ++ + L SL+ + QI G +++ ++ LTSL
Sbjct: 47 SEMKSLTSLDIHSNEIGVEGSKYISEMKQLTSLNIGYN-QIGVEGSKYISEMNQLTSLDI 105
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+N I +G K + + L L++ G + G+ L SL I + N I
Sbjct: 106 H-SNEIGVEGSKYISEMKQLTSLNIGYNQISVEGAKYISGMKSLTSLYIGY-NQIGVEGS 163
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL I +++ + G Y+ G++ LT LN+ + +S + L L
Sbjct: 164 KYISEMKQLTSLNIGHNEIGEEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSL 223
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
N+ ++S +G + S + SL LN+G+N+I E ++ + L SLN+ IG EG
Sbjct: 224 NIGHNEISVEGSKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGYNEIGVEGA 283
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
++G+ +L L + Q+G G +++S + L S+N+ I +
Sbjct: 284 KYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGHNEIGE 328
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 124/236 (52%), Gaps = 1/236 (0%)
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
L L++ NEI E ++ + L SL++ S IG EG ++ + +L L++ ++G
Sbjct: 4 LTSLDMHSNEIGVEGSKYISEMKQLTSLDIYSNEIGVEGAKYISEMKSLTSLDIHSNEIG 63
Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
G +++S + L S+N+ + I + ++ ++ L SL++ + +I G ++ +
Sbjct: 64 VEGSKYISEMKQLTSLNIGYNQIGVEGSKYISEMNQLTSLDIHSNEIGVEGSKYISEMKQ 123
Query: 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
LT L++ +I+ GA Y+ K+L SL I + G K+I ++ LT LN+ N +
Sbjct: 124 LTSLNIGYNQISVEGAKYISGMKSLTSLYIGYNQIGVEGSKYISEMKQLTSLNIGHN-EI 182
Query: 434 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
++ + ISG+ L SLN+ ++I G +++ +K L SL + +++ K +
Sbjct: 183 GEEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGHNEISVEGSKYI 238
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 119/238 (50%), Gaps = 3/238 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ + L S+D+ +++ G ++ + L SL+ + QIS G +++ G+ +LTSL +
Sbjct: 95 SEMNQLTSLDIHSNEIGVEGSKYISEMKQLTSLNIGYN-QISVEGAKYISGMKSLTSL-Y 152
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K + + L L++ G + G+ L SLNI + N I
Sbjct: 153 IGYNQIGVEGSKYISEMKQLTSLNIGHNEIGEEGAKYISGMKSLTSLNIGY-NQIGVEGS 211
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL I ++++ G Y+ G++ LT LN+ + +S + L L
Sbjct: 212 KYISEMKQLTSLNIGHNEISVEGSKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSL 271
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
N+ ++ +G + S + SL LN+G+N+I E ++ + L SLN+ IG+E
Sbjct: 272 NIGYNEIGVEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGHNEIGEE 329
>gi|290974856|ref|XP_002670160.1| predicted protein [Naegleria gruberi]
gi|284083716|gb|EFC37416.1| predicted protein [Naegleria gruberi]
Length = 376
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/341 (26%), Positives = 172/341 (50%), Gaps = 6/341 (1%)
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L N+ L LER R + GLMK L L+ + NCI +K + + NL L I
Sbjct: 35 LENIENLRLERNNRFFD--CQIIGLMKGLTVLSAE--NCIGTEGVKHICKMNNLTKLNIE 90
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+++ + G Y+ +++LT LN+ + ++ +S L +L L + C++ D+G +
Sbjct: 91 RNEIGEEGAKYISKMKQLTELNVGWNGIGKEGVEFISELKNLTLLEIEACRICDEGAKSI 150
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
S++ L LN+ +N I++ +L L L L L C I +EG ++ L L L++S
Sbjct: 151 SELKQLTHLNISYNNISNLGSKYLTELKQLTVLTLCDCNISEEGCKYISELNQLTDLDIS 210
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
+ +G +G+ ++SG+ L + + T + L+K++ + + +LN+ + D G +
Sbjct: 211 NNDIGCNGVEYISGMKQLLFLYIYGTNMYPTELQKISEMKQVTNLNISWNYVGDEGAKYI 270
Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
+ + LT L++ + I+ GA ++ K L L I + G I ++ L +L++S
Sbjct: 271 SDMKQLTKLEVVRSDISTEGAKHISELKQLTDLNIGENNIGGEGAIAISKMNQLRILDIS 330
Query: 429 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 469
N N+ E +S + L L++S++ I + G + + +K
Sbjct: 331 DN-NIGGIGAEHVSQMKQLTHLDISHNCIGNYGAKRINTMK 370
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/330 (24%), Positives = 154/330 (46%), Gaps = 30/330 (9%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
++GL+ L++ N I +G+K + NL KL++ER G + + +L LN
Sbjct: 58 MKGLTVLSA-----ENCIGTEGVKHICKMNNLTKLNIERNEIGEEGAKYISKMKQLTELN 112
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+ W N I ++ +S L NL L+I ++ D G + L++LT LN+ ++
Sbjct: 113 VGW-NGIGKEGVEFISELKNLTLLEIEACRICDEGAKSISELKQLTHLNISYNNISNLGS 171
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
L+ L L L L C +S++GC+ S++ N++TD L
Sbjct: 172 KYLTELKQLTVLTLCDCNISEEGCKYISEL----------NQLTD--------------L 207
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
++ + IG G+ ++G+ L L + T + + L+ +S + + ++N+S+ + D
Sbjct: 208 DISNNDIGCNGVEYISGMKQLLFLYIYGTNMYPTELQKISEMKQVTNLNISWNYVGDEGA 267
Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
+ ++ + L L + I+ G ++ L LT L++ I GA + LR L
Sbjct: 268 KYISDMKQLTKLEVVRSDISTEGAKHISELKQLTDLNIGENNIGGEGAIAISKMNQLRIL 327
Query: 402 EICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
+I + G +H+ + LT L++S NC
Sbjct: 328 DISDNNIGGIGAEHVSQMKQLTHLDISHNC 357
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 141/303 (46%), Gaps = 2/303 (0%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I G++H+ ++NLT L+ R N I +G K + + L +L++ G+ +
Sbjct: 70 IGTEGVKHICKMNNLTKLNIER-NEIGEEGAKYISKMKQLTELNVGWNGIGKEGVEFISE 128
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L L L I+ C I D K +S L L L IS + +++ G YL L++LT+L L
Sbjct: 129 LKNLTLLEIEACR-ICDEGAKSISELKQLTHLNISYNNISNLGSKYLTELKQLTVLTLCD 187
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
C ++ +S L L L+++ + +G E S + L L + + L +
Sbjct: 188 CNISEEGCKYISELNQLTDLDISNNDIGCNGVEYISGMKQLLFLYIYGTNMYPTELQKIS 247
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
+ + +LN+ +GDEG ++ + L LE+ + + + G +H+S L L +N+
Sbjct: 248 EMKQVTNLNISWNYVGDEGAKYISDMKQLTKLEVVRSDISTEGAKHISELKQLTDLNIGE 307
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
I ++ ++ L+ L++ I G ++ + LTHLD+ I + GA +
Sbjct: 308 NNIGGEGAIAISKMNQLRILDISDNNIGGIGAEHVSQMKQLTHLDISHNCIGNYGAKRIN 367
Query: 394 NFK 396
K
Sbjct: 368 TMK 370
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
+G+ G++H+ + NL +N+ I + + ++ + L LN+ I G+ ++ L
Sbjct: 70 IGTEGVKHICKMNNLTKLNIERNEIGEEGAKYISKMKQLTELNVGWNGIGKEGVEFISEL 129
Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
LT L++ RI D GA + K L L I +++ G K++ +L LT+L L +C
Sbjct: 130 KNLTLLEIEACRICDEGAKSISELKQLTHLNISYNNISNLGSKYLTELKQLTVLTLC-DC 188
Query: 432 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL-Q 490
N++++ + IS L L L++SN+ I G+ ++ +K L L + + +++++ +
Sbjct: 189 NISEEGCKYISELNQLTDLDISNNDIGCNGVEYISGMKQLLFLYIYGTNMYPTELQKISE 248
Query: 491 SRDLPNL 497
+ + NL
Sbjct: 249 MKQVTNL 255
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 5/146 (3%)
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
+ GL+ L + N I G+ + + LT L++ I + GA Y+ K L L +
Sbjct: 58 MKGLTVLSAENC----IGTEGVKHICKMNNLTKLNIERNEIGEEGAKYISKMKQLTELNV 113
Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
G+ GV+ I +L +LTLL + + C + D+ + IS L L LN+S + I++ G +
Sbjct: 114 GWNGIGKEGVEFISELKNLTLLEI-EACRICDEGAKSISELKQLTHLNISYNNISNLGSK 172
Query: 464 HLKPLKNLRSLTLESCKVTANDIKRL 489
+L LK L LTL C ++ K +
Sbjct: 173 YLTELKQLTVLTLCDCNISEEGCKYI 198
>gi|320165727|gb|EFW42626.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 553
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 119/399 (29%), Positives = 182/399 (45%), Gaps = 6/399 (1%)
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
SL N IS GL+ LT+L F NN + + A AGL L L L+R
Sbjct: 60 SLQGNLLTSISANAFT---GLTALTTL-FLENNQLPSISANALAGLTALQYLSLQRNQLT 115
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
GL L LN+ + N L+GLT +++L + + +T L
Sbjct: 116 SISANTFTGLTALTGLNLDF-NQFASISADTLAGLTTMRTLSLGSNGITSISANAFTSLT 174
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
LT+L+L + + D+L+ L ++ L+L R QL+ F+ + +L L+L +NE+
Sbjct: 175 ALTVLDLSYNELPSISADALTGLTAMRTLSLQRNQLTSISANTFTGLTALTGLDLSYNEL 234
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
L GLT L+ L+L++ I TGL L L L+ Q+ + L+GLT
Sbjct: 235 PSISANALTGLTALQYLSLNNNRITRISANTFTGLTALTTLYLNYNQLPNISANALTGLT 294
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
L S++L+ I+ AGL++L SL L Q++ ALT LT L +L L RI
Sbjct: 295 ALRSLSLTQNNITTIHANAFAGLTALASLVLVQNQLSSISADALTGLTALQYLSLNNNRI 354
Query: 385 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 444
T A L L + L + L++L L+L+ N +T +GL
Sbjct: 355 TRISANAFTGLTALTVLYLSYNELPSISANALAGLTALQYLSLNNN-QITSIAAAAFAGL 413
Query: 445 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 483
T L L + N++ITS L L+ L+L S ++T+
Sbjct: 414 TALTHLPLDNNQITSISAEAFTGLSALQLLSLNSNQITS 452
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 112/374 (29%), Positives = 170/374 (45%), Gaps = 6/374 (1%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
LDFN Q + + L GL+ + +LS N IT+ AF L L LDL
Sbjct: 133 LDFN---QFASISADTLAGLTTMRTLSLGSN-GITSISANAFTSLTALTVLDLSYNELPS 188
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
L GL + +L+++ N +T +GLT L L +S +++ L GL
Sbjct: 189 ISADALTGLTAMRTLSLQR-NQLTSISANTFTGLTALTGLDLSYNELPSISANALTGLTA 247
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L+L +T ++ + L +L L LN QL + + + +L+ L+L N IT
Sbjct: 248 LQYLSLNNNRITRISANTFTGLTALTTLYLNYNQLPNISANALTGLTALRSLSLTQNNIT 307
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
GLT L SL L + LTGL L+ L L++ ++ +GLT
Sbjct: 308 TIHANAFAGLTALASLVLVQNQLSSISADALTGLTALQYLSLNNNRITRISANAFTGLTA 367
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L + LS+ + S LAGL++L+ L+L+ QIT AA LT LTHL L +IT
Sbjct: 368 LTVLYLSYNELPSISANALAGLTALQYLSLNNNQITSIAAAAFAGLTALTHLPLDNNQIT 427
Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 445
A L+ L + +T L++LT L L+QN N+ + +GLT
Sbjct: 428 SISAEAFTGLSALQLLSLNSNQITSIAANAFTGLNALTSLYLNQN-NIAGISANAFTGLT 486
Query: 446 GLVSLNVSNSRITS 459
L L + ++ T+
Sbjct: 487 KLTQLYLDDNPFTT 500
>gi|290984863|ref|XP_002675146.1| LRR_RI domain-containing protein [Naegleria gruberi]
gi|284088740|gb|EFC42402.1| LRR_RI domain-containing protein [Naegleria gruberi]
Length = 458
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 96/379 (25%), Positives = 177/379 (46%), Gaps = 32/379 (8%)
Query: 81 SNLQSLDFNFCIQISD-GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
N+QSL+ N D LE + L+NLT S RN +G K L L L++E
Sbjct: 102 QNIQSLNVNQYFNTFDCHVLEFMGSLNNLTIRSKIRN-----EGAKCIPQLKQLTNLNVE 156
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
N I + +K S L +L + I +K+ D G Y
Sbjct: 157 D-------------------------NKIGNEGVKCFSELKHLTNFNIRNNKIMDEGAKY 191
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
+ + +LT +N+ + + +S + L LN++ ++ D G S++ L L++
Sbjct: 192 ISQMSQLTCMNIGNNNIGEPGAEYISQMKQLTNLNIHGNRIGDKGARHISEMEGLTHLDI 251
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
G+N + + +L + L L ++ + + G ++ L L L + +G +G R+
Sbjct: 252 GYNNLGNLGSQYLSQMKKLTYLFIEGNRLDENGAKFVSELKQLTILCIGANGIGPNGARY 311
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
++ + L +++ I + R L ++ L +LN+ ++ G ++ + LT LD+
Sbjct: 312 ITEMKQLTDLSIGGAKIGEEGARHLKTMNQLTNLNIGYNRLGSIGAKFISEMKQLTSLDI 371
Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
F I D GA ++ KNLR L+I +TD G K++ L+ LT L+++ N NL+D+ +
Sbjct: 372 FYNNIEDEGAKHISELKNLRKLDIGRNNITDEGAKYVSQLNQLTHLSITYN-NLSDEGAK 430
Query: 440 LISGLTGLVSLNVSNSRIT 458
I+ +T L L++ + I+
Sbjct: 431 YINTMTQLTKLDIGGNAIS 449
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/318 (24%), Positives = 156/318 (49%), Gaps = 2/318 (0%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I + G + + L LT+L+ +N I +G+K F+ L +L ++ + G +
Sbjct: 135 KIRNEGAKCIPQLKQLTNLNVE-DNKIGNEGVKCFSELKHLTNFNIRNNKIMDEGAKYIS 193
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+ +L +NI N I + + +S + L +L I +++ D G ++ ++ LT L++
Sbjct: 194 QMSQLTCMNI-GNNNIGEPGAEYISQMKQLTNLNIHGNRIGDKGARHISEMEGLTHLDIG 252
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+ LS + L YL + +L ++G + S++ L +L +G N I ++
Sbjct: 253 YNNLGNLGSQYLSQMKKLTYLFIEGNRLDENGAKFVSELKQLTILCIGANGIGPNGARYI 312
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
+ L L++ IG+EG +L + L L + ++GS G + +S + L S+++
Sbjct: 313 TEMKQLTDLSIGGAKIGEEGARHLKTMNQLTNLNIGYNRLGSIGAKFISEMKQLTSLDIF 372
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+ I D + ++ L +L+ L++ ITD G ++ L LTHL + ++D GA Y+
Sbjct: 373 YNNIEDEGAKHISELKNLRKLDIGRNNITDEGAKYVSQLNQLTHLSITYNNLSDEGAKYI 432
Query: 393 RNFKNLRSLEICGGGLTD 410
L L+I G ++D
Sbjct: 433 NTMTQLTKLDIGGNAISD 450
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 132/265 (49%), Gaps = 4/265 (1%)
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
A C+ L L +L N+ ++ ++G + FS++ L N+ N+I DE ++ ++
Sbjct: 141 AKCIPQLKQLTNL---NVEDNKIGNEGVKCFSELKHLTNFNIRNNKIMDEGAKYISQMSQ 197
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L +N+ + IG+ G ++ + L L + ++G G RH+S + L +++ + +
Sbjct: 198 LTCMNIGNNNIGEPGAEYISQMKQLTNLNIHGNRIGDKGARHISEMEGLTHLDIGYNNLG 257
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
+ + L+ + L L ++ ++ + G ++ L LT L + I +GA Y+ K
Sbjct: 258 NLGSQYLSQMKKLTYLFIEGNRLDENGAKFVSELKQLTILCIGANGIGPNGARYITEMKQ 317
Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
L L I G + + G +H+K ++ LT LN+ N L + IS + L SL++ + I
Sbjct: 318 LTDLSIGGAKIGEEGARHLKTMNQLTNLNIGYN-RLGSIGAKFISEMKQLTSLDIFYNNI 376
Query: 458 TSAGLRHLKPLKNLRSLTLESCKVT 482
G +H+ LKNLR L + +T
Sbjct: 377 EDEGAKHISELKNLRKLDIGRNNIT 401
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 146/309 (47%), Gaps = 1/309 (0%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I + K + L L +L + +K+ + G+ L+ LT N+ + +S +
Sbjct: 136 IRNEGAKCIPQLKQLTNLNVEDNKIGNEGVKCFSELKHLTNFNIRNNKIMDEGAKYISQM 195
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
L +N+ + + G E S++ L LN+ N I D+ H+ + L L++
Sbjct: 196 SQLTCMNIGNNNIGEPGAEYISQMKQLTNLNIHGNRIGDKGARHISEMEGLTHLDIGYNN 255
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
+G+ G L+ + L L + ++ +G + +S L L + + GI R + +
Sbjct: 256 LGNLGSQYLSQMKKLTYLFIEGNRLDENGAKFVSELKQLTILCIGANGIGPNGARYITEM 315
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
L L++ +I + G L ++ LT+L++ R+ GA ++ K L SL+I
Sbjct: 316 KQLTDLSIGGAKIGEEGARHLKTMNQLTNLNIGYNRLGSIGAKFISEMKQLTSLDIFYNN 375
Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 467
+ D G KHI +L +L L++ +N N+TD+ + +S L L L+++ + ++ G +++
Sbjct: 376 IEDEGAKHISELKNLRKLDIGRN-NITDEGAKYVSQLNQLTHLSITYNNLSDEGAKYINT 434
Query: 468 LKNLRSLTL 476
+ L L +
Sbjct: 435 MTQLTKLDI 443
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 112/242 (46%), Gaps = 11/242 (4%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
SQ L ++++ G+ + D G H+ + L LD + + + G ++L + LT L F
Sbjct: 217 SQMKQLTNLNIHGNRIGDKGARHISEMEGLTHLDIGYN-NLGNLGSQYLSQMKKLTYL-F 274
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHG----GLVNLKGLMKLESLNIKWCNCIT 169
N + G K + L L L C +G G + + +L L+I I
Sbjct: 275 IEGNRLDENGAKFVSELKQLTIL----CIGANGIGPNGARYITEMKQLTDLSIGGAK-IG 329
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
+ + L + L +L I +++ G ++ +++LT L++ + +S L +
Sbjct: 330 EEGARHLKTMNQLTNLNIGYNRLGSIGAKFISEMKQLTSLDIFYNNIEDEGAKHISELKN 389
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L L++ R ++D+G + S++ L L++ +N ++DE ++ +T L L++ I
Sbjct: 390 LRKLDIGRNNITDEGAKYVSQLNQLTHLSITYNNLSDEGAKYINTMTQLTKLDIGGNAIS 449
Query: 290 DE 291
D+
Sbjct: 450 DD 451
>gi|356513289|ref|XP_003525346.1| PREDICTED: uncharacterized protein LOC100814174 [Glycine max]
Length = 589
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 134/473 (28%), Positives = 200/473 (42%), Gaps = 93/473 (19%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNL 83
LE F+ A + G V+ +WM + + L ++LS V+ S L + S+L
Sbjct: 58 LEVFKHSAEEVDVRGDN-SVDAEWMAYLGAY-RHLRYLNLSDCHRVSTSALWPITGMSSL 115
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143
Q LD + C +++D G+ H+ + NL L ++TA+G+K A L NL LDL
Sbjct: 116 QELDLSRCFKVNDAGINHILSIPNLERLRISET-SVTAKGVKLLASLKNLSLLDL----- 169
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
GGL + D + L L L + + SK+++ G + L
Sbjct: 170 --GGL------------------PVDDVALTSLQVLKRLHYIDLWGSKISNKGASVLNTF 209
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ----LSDD----------GCEKFS 249
KLT LNL VT L L L YLN++ C L DD G +
Sbjct: 210 PKLTYLNLAWTSVT-----KLPKLSFLEYLNMSNCTIDSILEDDKAPLAKLILSGAMFMN 264
Query: 250 KIGSLKVLNLGFNEITDEC------LVHLKGLTNLESLNLDSCGIGDEG--LVNLTGLCN 301
+ +L N F D L + +E LNL SC +GD+ +V G N
Sbjct: 265 EAEALLYANTNFLSFLDVANSSFHRFFFLSKMKVIEHLNLSSCMMGDDSVEMVACAG-GN 323
Query: 302 LKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKS-------- 352
LK L LS T+V S+GL L+G + +LE ++LS T + D ++ ++ + SLK
Sbjct: 324 LKSLNLSGTRVSSAGLGILAGHVPHLEILSLSQTPVDDTAISFISMMPSLKDVDLSNTNI 383
Query: 353 ---------------------------LNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
LNL+ Q+ D L L+S L +L L A +
Sbjct: 384 KGFLHQGRTDVNSLLSLMALQNLKLERLNLEHTQVRDEALYPLSSFQELRYLSLKSASLA 443
Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 438
D YL + L +L IC LT+ G+ K +L LL+L LT+ T+
Sbjct: 444 DISLYYLSSIPKLTNLSICDAVLTNYGLDMFKAPETLKLLDLKGCWLLTEDTI 496
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 107/431 (24%), Positives = 186/431 (43%), Gaps = 66/431 (15%)
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSD 172
R +N++ A+ M +L L+L C R+ L + G+ L+ L++ C + D+
Sbjct: 71 RGDNSVDAEWMAYLGAYRHLRYLNLSDCHRVSTSALWPITGMSSLQELDLSRCFKVNDAG 130
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ + + NL+ L+IS + VT G+ L L+ L+LL+L G PV L SL L L Y
Sbjct: 131 INHILSIPNLERLRISETSVTAKGVKLLASLKNLSLLDLGGLPVDDVALTSLQVLKRLHY 190
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI---- 288
++L ++S+ G + L LNL + +T L L+ LE LN+ +C I
Sbjct: 191 IDLWGSKISNKGASVLNTFPKLTYLNLAWTSVTK-----LPKLSFLEYLNMSNCTIDSIL 245
Query: 289 -------------------------------------GDEGLVNLTGLCNLKCLE---LS 308
+ L +K +E LS
Sbjct: 246 EDDKAPLAKLILSGAMFMNEAEALLYANTNFLSFLDVANSSFHRFFFLSKMKVIEHLNLS 305
Query: 309 DTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAG-LSSLKSLNLDARQITDTGLA 366
+G + ++ NL+S+NLS T +S L LAG + L+ L+L + DT ++
Sbjct: 306 SCMMGDDSVEMVACAGGNLKSLNLSGTRVSSAGLGILAGHVPHLEILSLSQTPVDDTAIS 365
Query: 367 ALTSLTGLTHLDLFGARI--------TDSGA----AYLRNFKNLRSLEICGGGLTDAGVK 414
++ + L +DL I TD + L+N K L L + + D +
Sbjct: 366 FISMMPSLKDVDLSNTNIKGFLHQGRTDVNSLLSLMALQNLK-LERLNLEHTQVRDEALY 424
Query: 415 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
+ L L+L ++ +L D +L +S + L +L++ ++ +T+ GL K + L+ L
Sbjct: 425 PLSSFQELRYLSL-KSASLADISLYYLSSIPKLTNLSICDAVLTNYGLDMFKAPETLKLL 483
Query: 475 TLESCKVTAND 485
L+ C + D
Sbjct: 484 DLKGCWLLTED 494
>gi|300704275|ref|YP_003745878.1| leucine-rich-repeat type III effector protein (gala6) [Ralstonia
solanacearum CFBP2957]
gi|299071939|emb|CBJ43268.1| leucine-rich-repeat type III effector protein (GALA6) [Ralstonia
solanacearum CFBP2957]
Length = 519
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 148/477 (31%), Positives = 220/477 (46%), Gaps = 37/477 (7%)
Query: 4 RDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVN------DKWMDVIASQGS 57
R++++++ N SR + V+ RD A+ LG+YP + + ++ + +
Sbjct: 2 REVNRELRN---ASRAV--VTHLTIRDPAMF-AHLGKYPALTSVRFKGELTLEALKALPP 55
Query: 58 SLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
+ +D+S G V+++GL HL L+SL N I+I G L ++LTSLS
Sbjct: 56 GVEHLDISRCTGRGVSNAGLAHLA-TRPLKSLSLN-GIEIDAEGARLLATCASLTSLSLT 113
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL--------MKLESLNIKWCN 166
+I + A A ++ LDL VN+ G L SLN+ N
Sbjct: 114 -GCSIGDRAATALAQSRSIASLDLS---------VNMIGPDGARALASAPLVSLNLH-NN 162
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
I D L+ LKSL S + + D+G+ LT LNL G + A +L
Sbjct: 163 GIGDEGALALATSGTLKSLNASNNGIGDAGVLGFADNTVLTQLNLAGNMIGPAGARALRR 222
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
SL L+L+ +L D G + + SL LN+ NEI D+ L T L+SLNL
Sbjct: 223 NTSLTELDLSTNRLGDAGAQALAGSRSLTSLNVRSNEIGDDGTEALARNTTLKSLNLSYN 282
Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
IG G L G L+ L+L + G L+ T+L S++L I D R LA
Sbjct: 283 PIGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLGSNRIGDDGARALAT 342
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
+L L+L I D G AL LT L+L+G + D GAA L L SL +
Sbjct: 343 SRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAALAQHPRLTSLNLGRN 402
Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
+ G +H+ ++LT L+LS+N L + E +S T L +LNVS++ I AG R
Sbjct: 403 RIGPNGAQHLAKSATLTELDLSEN-RLGPEGAEALSLSTVLTTLNVSDNAIGEAGAR 458
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 118/431 (27%), Positives = 173/431 (40%), Gaps = 77/431 (17%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
HL LTS+ F+ +T + +KA + LD+ RCT G V+ GL L
Sbjct: 27 FAHLGKYPALTSVRFK--GELTLEALKALPPGVE--HLDISRCT---GRGVSNAGLAHLA 79
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+ +PL KSL ++ ++ G L LT L+L GC +
Sbjct: 80 T--------------RPL------KSLSLNGIEIDAEGARLLATCASLTSLSLTGCSIGD 119
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
+L+ S+ L+L+ + DG + L LNL N I DE + L L
Sbjct: 120 RAATALAQSRSIASLDLSVNMIGPDGARALAS-APLVSLNLHNNGIGDEGALALATSGTL 178
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
+SLN + GIGD G++ L L L+ +G +G R L T+L ++LS + D
Sbjct: 179 KSLNASNNGIGDAGVLGFADNTVLTQLNLAGNMIGPAGARALRRNTSLTELDLSTNRLGD 238
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL------------------- 379
+ LAG SL SLN+ + +I D G AL T L L+L
Sbjct: 239 AGAQALAGSRSLTSLNVRSNEIGDDGTEALARNTTLKSLNLSYNPIGFWGAGALGGSTTL 298
Query: 380 ------------FGA-----------------RITDSGAAYLRNFKNLRSLEICGGGLTD 410
+GA RI D GA L + L L++ + D
Sbjct: 299 RELDLRCCAIDPYGASALARNTSLASLHLGSNRIGDDGARALATSRTLTLLDLSRNNIHD 358
Query: 411 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 470
AG + + SLT LNL N + D ++ L SLN+ +RI G +HL
Sbjct: 359 AGAQALAGNGSLTSLNLYGN-EVDDDGAAALAQHPRLTSLNLGRNRIGPNGAQHLAKSAT 417
Query: 471 LRSLTLESCKV 481
L L L ++
Sbjct: 418 LTELDLSENRL 428
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 96/334 (28%), Positives = 149/334 (44%), Gaps = 4/334 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L+S++L + + D G + L L+SL+ + I D G+ + LT L+
Sbjct: 152 APLVSLNLHNNGIGDEGALALATSGTLKSLNASNN-GIGDAGVLGFADNTVLTQLNLA-G 209
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N I G +A +L +LDL G L G L SLN++ N I D + L
Sbjct: 210 NMIGPAGARALRRNTSLTELDLSTNRLGDAGAQALAGSRSLTSLNVR-SNEIGDDGTEAL 268
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ T LKSL +S + + G L G L L+L C + +L+ SL L+L
Sbjct: 269 ARNTTLKSLNLSYNPIGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLG 328
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
++ DDG + +L +L+L N I D L G +L SLNL + D+G L
Sbjct: 329 SNRIGDDGARALATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAAL 388
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
L L L ++G +G +HL+ L ++LS + L+ + L +LN+
Sbjct: 389 AQHPRLTSLNLGRNRIGPNGAQHLAKSATLTELDLSENRLGPEGAEALSLSTVLTTLNVS 448
Query: 357 ARQITDTGLAALTSL-TGLTHLDLFGARITDSGA 389
I + G A T LT LD R+ ++GA
Sbjct: 449 DNAIGEAGARAFAEKSTSLTSLDARNNRMGEAGA 482
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 132/481 (27%), Positives = 199/481 (41%), Gaps = 62/481 (12%)
Query: 11 FNELVYSRCLTEVSLEAFR--DCALQDL----CLGQYPGVNDKWMDVIASQGSSLLSVDL 64
+ L R E++LEA + ++ L C G+ GV++ + +A++ L S+ L
Sbjct: 33 YPALTSVRFKGELTLEALKALPPGVEHLDISRCTGR--GVSNAGLAHLATR--PLKSLSL 88
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
+G ++ G L C++L SL C I D L ++ SL N I G
Sbjct: 89 NGIEIDAEGARLLATCASLTSLSLTGC-SIGDRAATALAQSRSIASLDLSVN-MIGPDGA 146
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
+A A LV L+L G + L L+SLN N I D+ + + T L
Sbjct: 147 RALAS-APLVSLNLHNNGIGDEGALALATSGTLKSLNAS-NNGIGDAGVLGFADNTVLTQ 204
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L ++ + + +G L+ LT L+L + A +L+ SL LN+ ++ DDG
Sbjct: 205 LNLAGNMIGPAGARALRRNTSLTELDLSTNRLGDAGAQALAGSRSLTSLNVRSNEIGDDG 264
Query: 245 CEKFSKIGSLKVLNLGFNEITDE------------------CLVHLKGL------TNLES 280
E ++ +LK LNL +N I C + G T+L S
Sbjct: 265 TEALARNTTLKSLNLSYNPIGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLAS 324
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
L+L S IGD+ G R L+ L ++LS I D
Sbjct: 325 LHLGSNRIGDD------------------------GARALATSRTLTLLDLSRNNIHDAG 360
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
+ LAG SL SLNL ++ D G AAL LT L+L RI +GA +L L
Sbjct: 361 AQALAGNGSLTSLNLYGNEVDDDGAAALAQHPRLTSLNLGRNRIGPNGAQHLAKSATLTE 420
Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
L++ L G + + + LT LN+S N T L SL+ N+R+ A
Sbjct: 421 LDLSENRLGPEGAEALSLSTVLTTLNVSDNAIGEAGARAFAEKSTSLTSLDARNNRMGEA 480
Query: 461 G 461
G
Sbjct: 481 G 481
>gi|290981696|ref|XP_002673566.1| LRR_RI domain-containing protein [Naegleria gruberi]
gi|284087150|gb|EFC40822.1| LRR_RI domain-containing protein [Naegleria gruberi]
Length = 411
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 89/323 (27%), Positives = 165/323 (51%), Gaps = 9/323 (2%)
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
LS + NN +G F I +K+D E T + + L+ + +L L++++ N TD
Sbjct: 74 LSLKCNNDDKLKGQ--FLQNIETLKVDRESLTIMFDCKI-LEFMKQLTDLDVQYNNLGTD 130
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG---CPVTAACLDSLSAL 227
++K +S L L++L IS + + G Y+ L +LT LN+ G C T +S++
Sbjct: 131 -EVKYISQLKQLRNLDISINNIDKEGAKYISQLSQLTKLNISGNCYCIGTEGA-KHISSM 188
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
L YL++++ ++ D+G + S++ L L + N I DE H+ G+ L L++
Sbjct: 189 KQLTYLDISKNEIGDEGAKSISELKQLTSLYILTNNIGDEGAKHISGMNQLTELDISFNL 248
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
IG EG+ +++ + L L +++ ++G G ++L ++ L ++N+ I ++++ L
Sbjct: 249 IGIEGVRHISSMKQLTSLSINNAKIGD-GAKYLGAMSQLTNLNIFSCNIESNGAKQISAL 307
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
LK L + Q+ G ++ + L L + G I + GA ++ K L +L IC
Sbjct: 308 QQLKFLGIGYNQLGHEGAKNISEMKQLDSLYICGNDIGERGAKHISGMKRLTTLNICENN 367
Query: 408 LTDAGVKHIKDLSSLTLLNLSQN 430
+ D G K I SLT+L++ N
Sbjct: 368 IGDNGAKFISQSKSLTILSIYSN 390
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 85/164 (51%), Gaps = 3/164 (1%)
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
L + L +++ + + ++ ++ L L++L++ I G ++ L+ LT L++
Sbjct: 111 LEFMKQLTDLDVQYNNLGTDEVKYISQLKQLRNLDISINNIDKEGAKYISQLSQLTKLNI 170
Query: 380 FG--ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
G I GA ++ + K L L+I + D G K I +L LT L + N N+ D+
Sbjct: 171 SGNCYCIGTEGAKHISSMKQLTYLDISKNEIGDEGAKSISELKQLTSLYILTN-NIGDEG 229
Query: 438 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
+ ISG+ L L++S + I G+RH+ +K L SL++ + K+
Sbjct: 230 AKHISGMNQLTELDISFNLIGIEGVRHISSMKQLTSLSINNAKI 273
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 4/138 (2%)
Query: 343 KLAG--LSSLKSLNLDARQITDT-GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
KL G L ++++L +D +T L + LT LD+ + Y+ K LR
Sbjct: 83 KLKGQFLQNIETLKVDRESLTIMFDCKILEFMKQLTDLDVQYNNLGTDEVKYISQLKQLR 142
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN-LTDKTLELISGLTGLVSLNVSNSRIT 458
+L+I + G K+I LS LT LN+S NC + + + IS + L L++S + I
Sbjct: 143 NLDISINNIDKEGAKYISQLSQLTKLNISGNCYCIGTEGAKHISSMKQLTYLDISKNEIG 202
Query: 459 SAGLRHLKPLKNLRSLTL 476
G + + LK L SL +
Sbjct: 203 DEGAKSISELKQLTSLYI 220
>gi|149176763|ref|ZP_01855374.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148844404|gb|EDL58756.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 416
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 139/275 (50%), Gaps = 3/275 (1%)
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
+TD G YLK QKL L + G +T L+ L+ + SL L L+ ++ D +
Sbjct: 129 ITDQGATYLKQ-QKLGHLGITGGSMTDNGLNELAEMNSLRTLGLHHLAITGDQLPP-NTF 186
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
LK+L+L T++ L +L +L L+L + + GL L+ NL+ L L + +
Sbjct: 187 PKLKMLDLSDTRFTNQGLKNLSPNASLVYLHLSNTNVSSAGLQELSKFPNLRALRLGNLK 246
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
+ ++ L+ + L ++L T ++D +L+ L + L LD QITD GL L ++
Sbjct: 247 IKAAAFAKLANMKRLYQLDLQGTAVNDAVALQLSQLDQITQLRLDQSQITDQGLRHLATM 306
Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
L L L GA+ITDSG L L L++ ++D G++ + + +L +LNLS N
Sbjct: 307 KNLETLFLPGAKITDSGLKVLSQLPKLDYLDLSDTQISDEGLRQLSKIPALRMLNLS-NT 365
Query: 432 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 466
+TD+ +++ L S+ N+ I+ + ++
Sbjct: 366 RVTDQAKQILLQFPALESIEAFNTSISPVTIEDIR 400
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 123/252 (48%), Gaps = 1/252 (0%)
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
+TD+ + L+ + +L++L + +T + KL +L+L T L +LS
Sbjct: 151 SMTDNGLNELAEMNSLRTLGLHHLAITGDQLPP-NTFPKLKMLDLSDTRFTNQGLKNLSP 209
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
SL YL+L+ +S G ++ SK +L+ L LG +I L + L L+L
Sbjct: 210 NASLVYLHLSNTNVSSAGLQELSKFPNLRALRLGNLKIKAAAFAKLANMKRLYQLDLQGT 269
Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
+ D + L+ L + L L +Q+ GLRHL+ + NLE++ L I+D L+ L+
Sbjct: 270 AVNDAVALQLSQLDQITQLRLDQSQITDQGLRHLATMKNLETLFLPGAKITDSGLKVLSQ 329
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
L L L+L QI+D GL L+ + L L+L R+TD L F L S+E
Sbjct: 330 LPKLDYLDLSDTQISDEGLRQLSKIPALRMLNLSNTRVTDQAKQILLQFPALESIEAFNT 389
Query: 407 GLTDAGVKHIKD 418
++ ++ I+D
Sbjct: 390 SISPVTIEDIRD 401
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 143/312 (45%), Gaps = 39/312 (12%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLS------VDLSGSDVTDSGLIHLKDCSNLQS 85
++Q+L LG N +I QG++ L + ++G +TD+GL L + ++L++
Sbjct: 114 SIQNLTLG-----NPHNPTIITDQGATYLKQQKLGHLGITGGSMTDNGLNELAEMNSLRT 168
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
L GL HL AIT + L LDL +
Sbjct: 169 L-----------GLHHL---------------AITGDQLPP-NTFPKLKMLDLSDTRFTN 201
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
GL NL L L++ N ++ + ++ LS NL++L++ K+ + A L +++
Sbjct: 202 QGLKNLSPNASLVYLHLSNTN-VSSAGLQELSKFPNLRALRLGNLKIKAAAFAKLANMKR 260
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L+L+G V A LS L + L L++ Q++D G + + +L+ L L +IT
Sbjct: 261 LYQLDLQGTAVNDAVALQLSQLDQITQLRLDQSQITDQGLRHLATMKNLETLFLPGAKIT 320
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
D L L L L+ L+L I DEGL L+ + L+ L LS+T+V + L
Sbjct: 321 DSGLKVLSQLPKLDYLDLSDTQISDEGLRQLSKIPALRMLNLSNTRVTDQAKQILLQFPA 380
Query: 326 LESINLSFTGIS 337
LESI T IS
Sbjct: 381 LESIEAFNTSIS 392
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 117/257 (45%), Gaps = 33/257 (12%)
Query: 236 NRCQLSDDGCE--KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI-GDEG 292
N ++D G K K+G L + +TD L L + +L +L L I GD+
Sbjct: 125 NPTIITDQGATYLKQQKLGHLGITG---GSMTDNGLNELAEMNSLRTLGLHHLAITGDQL 181
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
N LK L+LSDT+ + GL++LS +L ++LS T +S L++L+ +L++
Sbjct: 182 PPN--TFPKLKMLDLSDTRFTNQGLKNLSPNASLVYLHLSNTNVSSAGLQELSKFPNLRA 239
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
L L +I A L ++ L LDL G + D+ A L + L + +TD G
Sbjct: 240 LRLGNLKIKAAAFAKLANMKRLYQLDLQGTAVNDAVALQLSQLDQITQLRLDQSQITDQG 299
Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 472
++H+ T K LE +L + ++IT +GL+ L L L
Sbjct: 300 LRHLA----------------TMKNLE---------TLFLPGAKITDSGLKVLSQLPKLD 334
Query: 473 SLTLESCKVTANDIKRL 489
L L +++ +++L
Sbjct: 335 YLDLSDTQISDEGLRQL 351
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 120/268 (44%), Gaps = 9/268 (3%)
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL----DSCGIG 289
L+ +S + I S+ G ++ D+ L+ L L ++++L L + I
Sbjct: 71 QLDWWSVSPQTHAFWGNIYSVYTRPSGSFQVDDDFLLELGNLHSIQNLTLGNPHNPTIIT 130
Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
D+G L L L ++ + +GL L+ + +L ++ L I+ L
Sbjct: 131 DQGATYLKQ-QKLGHLGITGGSMTDNGLNELAEMNSLRTLGLHHLAITGDQLPP-NTFPK 188
Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409
LK L+L + T+ GL L+ L +L L ++ +G L F NLR+L + +
Sbjct: 189 LKMLDLSDTRFTNQGLKNLSPNASLVYLHLSNTNVSSAGLQELSKFPNLRALRLGNLKIK 248
Query: 410 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 469
A + ++ L L+L Q + D +S L + L + S+IT GLRHL +K
Sbjct: 249 AAAFAKLANMKRLYQLDL-QGTAVNDAVALQLSQLDQITQLRLDQSQITDQGLRHLATMK 307
Query: 470 NLRSLTLESCKVTANDIKRLQSRDLPNL 497
NL +L L K+T + +K L LP L
Sbjct: 308 NLETLFLPGAKITDSGLKVLSQ--LPKL 333
>gi|290993162|ref|XP_002679202.1| predicted protein [Naegleria gruberi]
gi|284092818|gb|EFC46458.1| predicted protein [Naegleria gruberi]
Length = 345
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 98/338 (28%), Positives = 165/338 (48%), Gaps = 8/338 (2%)
Query: 122 QGMKAFAGLINLVKLDLERC-TRIHGGLVNLKGLMKLE-SLNIKWCNCITDSDMKPLSGL 179
Q K GL L +L + R G + LK L L N WC T +K L
Sbjct: 14 QDAKYIGGLKQLTRLTIYSSHIRDIGKISELKQLTYLNVPANGIWC--YTTKQVKEFKQL 71
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
T +L I ++V G Y+ L++LT L+++ + ++ LS L L YLN++
Sbjct: 72 T---TLIIDQNQVGSEGCKYISELKQLTSLSIDENFIYDEGVEYLSELAQLTYLNISNNG 128
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
+ +GC+ K+ L L N I E ++ L L+ L++ IGD+GL ++ L
Sbjct: 129 VGSEGCKYVGKMKRLTSLGFYNNRIGKEGAKYISTLNQLKQLDISRTNIGDKGLEHIGQL 188
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
L L+L ++G+ G ++LS L L +N+S I + ++ + L L +L ++ +
Sbjct: 189 SQLTSLDLYCNKIGNGGAKYLSELKQLTYLNISENHIGNEGIKYIGELKQLVNLIINNNR 248
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
I + G+ + L LT+L++ RI + G Y+ + K L ++ I + G K+I L
Sbjct: 249 IGNDGVKYIGELKQLTYLNISENRIGNEGIKYIGDLKQLTNIIISRNWIGSEGAKYIGKL 308
Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
S LT L LS N N+ ++ + +S L L LN+ ++I
Sbjct: 309 SQLTSLGLSSN-NIDNEGAKYLSELKELSFLNIERNKI 345
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 91/184 (49%), Gaps = 3/184 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L +D+S +++ D GL H+ S L SLD +C +I +GG ++L L LT L+ N
Sbjct: 165 NQLKQLDISRTNIGDKGLEHIGQLSQLTSLDL-YCNKIGNGGAKYLSELKQLTYLNISEN 223
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ I +G+K L LV L + + G+ + L +L LNI N I + +K +
Sbjct: 224 H-IGNEGIKYIGELKQLVNLIINNNRIGNDGVKYIGELKQLTYLNIS-ENRIGNEGIKYI 281
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
L L ++ IS + + G Y+ L +LT L L + LS L L +LN+
Sbjct: 282 GDLKQLTNIIISRNWIGSEGAKYIGKLSQLTSLGLSSNNIDNEGAKYLSELKELSFLNIE 341
Query: 237 RCQL 240
R ++
Sbjct: 342 RNKI 345
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
+ + GL L L + + I D G ++ L LT+L++ I ++ FK L +L
Sbjct: 17 KYIGGLKQLTRLTIYSSHIRDIG--KISELKQLTYLNVPANGIWCYTTKQVKEFKQLTTL 74
Query: 402 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
I + G K+I +L LT L++ +N + D+ +E +S L L LN+SN+ + S G
Sbjct: 75 IIDQNQVGSEGCKYISELKQLTSLSIDENF-IYDEGVEYLSELAQLTYLNISNNGVGSEG 133
Query: 462 LRHLKPLKNLRSLTLESCKVTANDIKRLQS 491
+++ +K L SL + ++ K + +
Sbjct: 134 CKYVGKMKRLTSLGFYNNRIGKEGAKYIST 163
>gi|59802548|gb|AAX07514.1| putative regulatory subunit [Gemmata sp. Wa1-1]
Length = 250
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 104/192 (54%)
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+++D ++ + + +L LNL ++TD L L LT L L L + D GL L
Sbjct: 30 KVTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDAGLKELAP 89
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L NL LEL TQV +GL+ L+ LTNL + L T ++D L++LA L SL L L
Sbjct: 90 LTNLTTLELGSTQVTDAGLKELAPLTNLTVLTLGSTQVTDAGLKELAPLKSLTLLELGET 149
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
QIT+ G+ L T LT LDL R+TD+G L F L L + G +TD +K +
Sbjct: 150 QITEAGIKELAPFTKLTRLDLSITRVTDAGVKGLAPFTKLTQLNLGGTLVTDTCLKDLAP 209
Query: 419 LSSLTLLNLSQN 430
L +L L+LS+N
Sbjct: 210 LKNLAFLSLSRN 221
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/207 (37%), Positives = 111/207 (53%), Gaps = 2/207 (0%)
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
S+ + KVTD+ + L L+ LT LNL VT A L LS L L +L L + +++D
Sbjct: 23 SVDFALWKVTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDA 82
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
G ++ + + +L L LG ++TD L L LTNL L L S + D GL L L +L
Sbjct: 83 GLKELAPLTNLTTLELGSTQVTDAGLKELAPLTNLTVLTLGSTQVTDAGLKELAPLKSLT 142
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
LEL +TQ+ +G++ L+ T L ++LS T ++D ++ LA + L LNL +TDT
Sbjct: 143 LLELGETQITEAGIKELAPFTKLTRLDLSITRVTDAGVKGLAPFTKLTQLNLGGTLVTDT 202
Query: 364 GLAALTSLTGLTHLDLFGARITDSGAA 390
L L L L L L +R GAA
Sbjct: 203 CLKDLAPLKNLAFLSL--SRNERDGAA 227
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 107/189 (56%), Gaps = 1/189 (0%)
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
+ D L L L NL L L T+V +GL+ LS LT L + L T ++D L++LA L
Sbjct: 31 VTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDAGLKELAPL 90
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
++L +L L + Q+TD GL L LT LT L L ++TD+G L K+L LE+
Sbjct: 91 TNLTTLELGSTQVTDAGLKELAPLTNLTVLTLGSTQVTDAGLKELAPLKSLTLLELGETQ 150
Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 467
+T+AG+K + + LT L+LS +TD ++ ++ T L LN+ + +T L+ L P
Sbjct: 151 ITEAGIKELAPFTKLTRLDLSIT-RVTDAGVKGLAPFTKLTQLNLGGTLVTDTCLKDLAP 209
Query: 468 LKNLRSLTL 476
LKNL L+L
Sbjct: 210 LKNLAFLSL 218
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 100/188 (53%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
VT A L L+ L +L LNL +++D G ++ S + L L L ++TD L L L
Sbjct: 31 VTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDAGLKELAPL 90
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
TNL +L L S + D GL L L NL L L TQV +GL+ L+ L +L + L T
Sbjct: 91 TNLTTLELGSTQVTDAGLKELAPLTNLTVLTLGSTQVTDAGLKELAPLKSLTLLELGETQ 150
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
I++ +++LA + L L+L ++TD G+ L T LT L+L G +TD+ L
Sbjct: 151 ITEAGIKELAPFTKLTRLDLSITRVTDAGVKGLAPFTKLTQLNLGGTLVTDTCLKDLAPL 210
Query: 396 KNLRSLEI 403
KNL L +
Sbjct: 211 KNLAFLSL 218
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 111/231 (48%), Gaps = 29/231 (12%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-QISDGGLEHLRGLSNLTSLS 112
+ G ++SVD + VTD+ L L NL L N C+ +++D GL+ L L+ LT L
Sbjct: 16 APGKPVISVDFALWKVTDADLKELAPLKNLTQL--NLCLTKVTDAGLKELSPLTKLTHLC 73
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
+ +T G+K A L NL L+L +TD+
Sbjct: 74 LMQTK-VTDAGLKELAPLTNLTTLEL-------------------------GSTQVTDAG 107
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+K L+ LTNL L + ++VTD+G+ L L+ LTLL L +T A + L+ L
Sbjct: 108 LKELAPLTNLTVLTLGSTQVTDAGLKELAPLKSLTLLELGETQITEAGIKELAPFTKLTR 167
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L+L+ +++D G + + L LNLG +TD CL L L NL L+L
Sbjct: 168 LDLSITRVTDAGVKGLAPFTKLTQLNLGGTLVTDTCLKDLAPLKNLAFLSL 218
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 96/172 (55%), Gaps = 1/172 (0%)
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
+V + L+ L+ L NL +NL T ++D L++L+ L+ L L L ++TD GL L
Sbjct: 30 KVTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDAGLKELAP 89
Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
LT LT L+L ++TD+G L NL L + +TDAG+K + L SLTLL L +
Sbjct: 90 LTNLTTLELGSTQVTDAGLKELAPLTNLTVLTLGSTQVTDAGLKELAPLKSLTLLELGET 149
Query: 431 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
+T+ ++ ++ T L L++S +R+T AG++ L P L L L VT
Sbjct: 150 -QITEAGIKELAPFTKLTRLDLSITRVTDAGVKGLAPFTKLTQLNLGGTLVT 200
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 93/162 (57%), Gaps = 1/162 (0%)
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
S++ + ++D L++LA L +L LNL ++TD GL L+ LT LTHL L ++TD+
Sbjct: 23 SVDFALWKVTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDA 82
Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
G L NL +LE+ +TDAG+K + L++LT+L L + +TD L+ ++ L L
Sbjct: 83 GLKELAPLTNLTTLELGSTQVTDAGLKELAPLTNLTVLTLG-STQVTDAGLKELAPLKSL 141
Query: 448 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
L + ++IT AG++ L P L L L +VT +K L
Sbjct: 142 TLLELGETQITEAGIKELAPFTKLTRLDLSITRVTDAGVKGL 183
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 84/174 (48%), Gaps = 9/174 (5%)
Query: 19 CLTEVSLEAFRDCA----LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGL 74
CLT+V+ ++ + L LCL Q V D + +A ++L +++L + VTD+GL
Sbjct: 51 CLTKVTDAGLKELSPLTKLTHLCLMQT-KVTDAGLKELAPL-TNLTTLELGSTQVTDAGL 108
Query: 75 IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
L +NL L Q++D GL+ L L +LT L IT G+K A L
Sbjct: 109 KELAPLTNLTVLTLG-STQVTDAGLKELAPLKSLTLLELGETQ-ITEAGIKELAPFTKLT 166
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
+LDL G+ L KL LN+ +TD+ +K L+ L NL L +S
Sbjct: 167 RLDLSITRVTDAGVKGLAPFTKLTQLNL-GGTLVTDTCLKDLAPLKNLAFLSLS 219
>gi|326513166|dbj|BAK06823.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 627
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 122/445 (27%), Positives = 204/445 (45%), Gaps = 54/445 (12%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD---VTDSGLIHLKDCS 81
LE FR ++Q++ L V+ +W+ + S L V L +D V S + L S
Sbjct: 90 LEVFRH-SVQEIDLSGDIAVDAEWLAYLGS--FRYLGV-LKLADCKKVDHSAIWPLSGMS 145
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
L+ LD + C +I+D G++H+ + +L L +T G+ + L L+ LDL
Sbjct: 146 MLKELDLSRCSKITDAGIKHIVSIDSLEKLHLS-ETGLTDNGVMLISALKGLILLDLGGI 204
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
L +L+ L +LE L++ W + ITD L T L+ L +S + VT L
Sbjct: 205 HMTDKALRSLQVLTQLEHLDV-WGSEITDEGASILEAFTGLRFLNVSWTHVTR-----LP 258
Query: 202 GLQKLTLLNLEGCPVTAAC---------LDSLSALGSLF----------------YLNLN 236
L + LN+ C + + C L +A + F +L+++
Sbjct: 259 HLPNMKYLNMSNCTIYSICGGDSEVHIPLQKFTASAASFGDIDEVFSSIVASSFSFLDMS 318
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL-TNLESLNLDSCGIGDEGLVN 295
C LS+ K+ SL+ L++ N +TD+ + ++ + L L+L + GI + L
Sbjct: 319 GCSLSN--LYGLQKMKSLEHLDISLNRVTDDAVEYVANIGMKLRYLSLKNTGITSQALCI 376
Query: 296 LTG-LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-----------GSLRK 343
L G + NL L L+ T++ S L ++S + +L I+LS T I SL
Sbjct: 377 LAGTVPNLASLSLAYTKIDDSALVYISMMPSLRVIDLSHTTIKGFTRVEANSEKIPSLPL 436
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
L L L+SLNL+ ++D + +TS L +L L ++D G L + NL L
Sbjct: 437 LEHLIYLESLNLEDAPLSDEVIPPMTSFRALKYLYLKSDFLSDPGLHALSSASNLIHLGF 496
Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLS 428
CG L+++G+ + L +L+LS
Sbjct: 497 CGSVLSNSGLLEFVPPAQLHVLDLS 521
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 106/441 (24%), Positives = 186/441 (42%), Gaps = 67/441 (15%)
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ A+ + L L L C ++ H + L G+ L+ L++ C+ ITD+ +K +
Sbjct: 107 AVDAEWLAYLGSFRYLGVLKLADCKKVDHSAIWPLSGMSMLKELDLSRCSKITDAGIKHI 166
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ +L+ L +S + +TD+G+ + L+ L LL+L G +T L SL L L +L++
Sbjct: 167 VSIDSLEKLHLSETGLTDNGVMLISALKGLILLDLGGIHMTDKALRSLQVLTQLEHLDVW 226
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI-----GDE 291
+++D+G L+ LN+ + +T L L N++ LN+ +C I GD
Sbjct: 227 GSEITDEGASILEAFTGLRFLNVSWTHVT-----RLPHLPNMKYLNMSNCTIYSICGGDS 281
Query: 292 ---------------------------------------GLVNLTGLCNLKCLE---LSD 309
L NL GL +K LE +S
Sbjct: 282 EVHIPLQKFTASAASFGDIDEVFSSIVASSFSFLDMSGCSLSNLYGLQKMKSLEHLDISL 341
Query: 310 TQVGSSGLRHLSGL-TNLESINLSFTGISDGSLRKLAG-LSSLKSLNLDARQITDTGLAA 367
+V + +++ + L ++L TGI+ +L LAG + +L SL+L +I D+ L
Sbjct: 342 NRVTDDAVEYVANIGMKLRYLSLKNTGITSQALCILAGTVPNLASLSLAYTKIDDSALVY 401
Query: 368 LTSLTGLTHLDLFGARITD-----------SGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
++ + L +DL I L + L SL + L+D + +
Sbjct: 402 ISMMPSLRVIDLSHTTIKGFTRVEANSEKIPSLPLLEHLIYLESLNLEDAPLSDEVIPPM 461
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
+L L L + L+D L +S + L+ L S ++++GL P L L L
Sbjct: 462 TSFRALKYLYLKSDF-LSDPGLHALSSASNLIHLGFCGSVLSNSGLLEFVPPAQLHVLDL 520
Query: 477 ESCKVTANDIKRLQSRDLPNL 497
C + D R P++
Sbjct: 521 SGCWILTGDAISTFRRHHPSI 541
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 122/282 (43%), Gaps = 37/282 (13%)
Query: 15 VYSRC----LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT 70
+YS C + L+ F A + +++ + ++AS S L D+SG +
Sbjct: 273 IYSICGGDSEVHIPLQKFTASA------ASFGDIDEVFSSIVASSFSFL---DMSGCSL- 322
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLS-NLTSLSFRRNNAITAQGMKAFAG 129
S L L+ +L+ LD + +++D +E++ + L LS + N IT+Q + AG
Sbjct: 323 -SNLYGLQKMKSLEHLDISLN-RVTDDAVEYVANIGMKLRYLSLK-NTGITSQALCILAG 379
Query: 130 LI-NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
+ NL L L LV + + L + D + G T +++ +
Sbjct: 380 TVPNLASLSLAYTKIDDSALVYISMMPSLR---------VIDLSHTTIKGFTRVEA---N 427
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
K+ + L+ L L LNLE P++ + +++ +L YL L LSD G
Sbjct: 428 SEKIP--SLPLLEHLIYLESLNLEDAPLSDEVIPPMTSFRALKYLYLKSDFLSDPGLHAL 485
Query: 249 SKIGSLKVLNLGF--NEITDECLVHLKGLTNLESLNLDSCGI 288
S +L ++LGF + +++ L+ L L+L C I
Sbjct: 486 SSASNL--IHLGFCGSVLSNSGLLEFVPPAQLHVLDLSGCWI 525
>gi|290996041|ref|XP_002680591.1| predicted protein [Naegleria gruberi]
gi|284094212|gb|EFC47847.1| predicted protein [Naegleria gruberi]
Length = 281
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 125/250 (50%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ LS L LK L I S + D G+ ++ L++LT L++ ++ LS L L +
Sbjct: 17 LNHLSELKQLKKLHIYDSYIGDEGVRFISELKQLTTLDIRNNGISEYGAKYLSELKQLTF 76
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L +++ + G + S++ L +L + N I DE +L L L LN+ IGDEG
Sbjct: 77 LIIDKNNIGAKGSKYISELKQLTILIIDKNNIDDEGAKYLSELKQLTYLNIQDNRIGDEG 136
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
+ L L L +++ Q+G+ G ++LS L +L +N+S I D + L L L
Sbjct: 137 SKYIGELKQLTDLYINNNQIGNEGAKYLSELKHLILLNISNNQIGDEGAKYLCELKQLMD 196
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
L++ I D G+ L+ L LTHLD+ +I D G Y+ K + L I + D G
Sbjct: 197 LDISCNDIGDEGIKYLSGLKQLTHLDISYNKIRDEGVKYISELKEIMYLYINNNYIGDEG 256
Query: 413 VKHIKDLSSL 422
K++ +++ L
Sbjct: 257 TKYLSEMNQL 266
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 133/259 (51%), Gaps = 3/259 (1%)
Query: 143 RIHGG--LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
RI G L +L L +L+ L+I + + I D ++ +S L L +L I + +++ G YL
Sbjct: 10 RIKEGEALNHLSELKQLKKLHI-YDSYIGDEGVRFISELKQLTTLDIRNNGISEYGAKYL 68
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
L++LT L ++ + A +S L L L +++ + D+G + S++ L LN+
Sbjct: 69 SELKQLTFLIIDKNNIGAKGSKYISELKQLTILIIDKNNIDDEGAKYLSELKQLTYLNIQ 128
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
N I DE ++ L L L +++ IG+EG L+ L +L L +S+ Q+G G ++L
Sbjct: 129 DNRIGDEGSKYIGELKQLTDLYINNNQIGNEGAKYLSELKHLILLNISNNQIGDEGAKYL 188
Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
L L +++S I D ++ L+GL L L++ +I D G+ ++ L + +L +
Sbjct: 189 CELKQLMDLDISCNDIGDEGIKYLSGLKQLTHLDISYNKIRDEGVKYISELKEIMYLYIN 248
Query: 381 GARITDSGAAYLRNFKNLR 399
I D G YL L+
Sbjct: 249 NNYIGDEGTKYLSEMNQLK 267
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 130/273 (47%), Gaps = 6/273 (2%)
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
+K L KL + EG L+ LS L L L++ + D+G S++ L L++
Sbjct: 1 MKSLTKLKIRIKEG-----EALNHLSELKQLKKLHIYDSYIGDEGVRFISELKQLTTLDI 55
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
N I++ +L L L L +D IG +G ++ L L L + + G ++
Sbjct: 56 RNNGISEYGAKYLSELKQLTFLIIDKNNIGAKGSKYISELKQLTILIIDKNNIDDEGAKY 115
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
LS L L +N+ I D + + L L L ++ QI + G L+ L L L++
Sbjct: 116 LSELKQLTYLNIQDNRIGDEGSKYIGELKQLTDLYINNNQIGNEGAKYLSELKHLILLNI 175
Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
+I D GA YL K L L+I + D G+K++ L LT L++S N + D+ ++
Sbjct: 176 SNNQIGDEGAKYLCELKQLMDLDISCNDIGDEGIKYLSGLKQLTHLDISYN-KIRDEGVK 234
Query: 440 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 472
IS L ++ L ++N+ I G ++L + L+
Sbjct: 235 YISELKEIMYLYINNNYIGDEGTKYLSEMNQLK 267
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 124/267 (46%), Gaps = 3/267 (1%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
L HL + L+ L + I D G+ + L LT+L R NN I+ G K + L
Sbjct: 15 EALNHLSELKQLKKLHI-YDSYIGDEGVRFISELKQLTTLDIR-NNGISEYGAKYLSELK 72
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L L +++ G + L +L L I N I D K LS L L L I ++
Sbjct: 73 QLTFLIIDKNNIGAKGSKYISELKQLTILIID-KNNIDDEGAKYLSELKQLTYLNIQDNR 131
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
+ D G Y+ L++LT L + + LS L L LN++ Q+ D+G + ++
Sbjct: 132 IGDEGSKYIGELKQLTDLYINNNQIGNEGAKYLSELKHLILLNISNNQIGDEGAKYLCEL 191
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
L L++ N+I DE + +L GL L L++ I DEG+ ++ L + L +++
Sbjct: 192 KQLMDLDISCNDIGDEGIKYLSGLKQLTHLDISYNKIRDEGVKYISELKEIMYLYINNNY 251
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISD 338
+G G ++LS + L+ N F D
Sbjct: 252 IGDEGTKYLSEMNQLKDHNKDFQYKED 278
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 101/196 (51%), Gaps = 6/196 (3%)
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
E L +L+ L LK L + D+ +G G+R +S L L ++++ GIS+ + L+ L L
Sbjct: 15 EALNHLSELKQLKKLHIYDSYIGDEGVRFISELKQLTTLDIRNNGISEYGAKYLSELKQL 74
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
L +D I G ++ L LT L + I D GA YL K L L I + D
Sbjct: 75 TFLIIDKNNIGAKGSKYISELKQLTILIIDKNNIDDEGAKYLSELKQLTYLNIQDNRIGD 134
Query: 411 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 470
G K+I +L LT L ++ N + ++ + +S L L+ LN+SN++I G ++L LK
Sbjct: 135 EGSKYIGELKQLTDLYINNN-QIGNEGAKYLSELKHLILLNISNNQIGDEGAKYLCELKQ 193
Query: 471 LRSLTLESCKVTANDI 486
L L + SC NDI
Sbjct: 194 LMDLDI-SC----NDI 204
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 81/174 (46%), Gaps = 2/174 (1%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I D G ++L L LT L+ + +N I +G K L L L + + G L
Sbjct: 108 IDDEGAKYLSELKQLTYLNIQ-DNRIGDEGSKYIGELKQLTDLYINNNQIGNEGAKYLSE 166
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L L LNI N I D K L L L L ISC+ + D GI YL GL++LT L++
Sbjct: 167 LKHLILLNIS-NNQIGDEGAKYLCELKQLMDLDISCNDIGDEGIKYLSGLKQLTHLDISY 225
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
+ + +S L + YL +N + D+G + S++ LK N F DE
Sbjct: 226 NKIRDEGVKYISELKEIMYLYINNNYIGDEGTKYLSEMNQLKDHNKDFQYKEDE 279
>gi|290993192|ref|XP_002679217.1| predicted protein [Naegleria gruberi]
gi|284092833|gb|EFC46473.1| predicted protein [Naegleria gruberi]
Length = 310
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 94/306 (30%), Positives = 154/306 (50%), Gaps = 27/306 (8%)
Query: 174 KPLSGLTNLKSLQISCS-KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
K + L NLK L +S + + + + + L++L LN+ C + + L+ L L
Sbjct: 30 KCICQLKNLKKLDVSYNYHLENEVVELISELRELRELNIRYCDIGVEEVKYLTKLDKLHS 89
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L++ Q+ DG + S + SL L++ EI DE + L L LN++ GIG G
Sbjct: 90 LDIGINQIYADGAKLLSTMKSLTKLDVAECEIGDEGCQSITELYQLTDLNINGDGIGVGG 149
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
+ + NLK L++S+ G+ G + +S L+ LE +N+S++ I + + +L L +L S
Sbjct: 150 ANCIGQMRNLKSLDISNNFFGNYGAKSISELSQLEILNVSYSDIDEVGVYQLRKLKNLTS 209
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
L++ +ITD G + L LTHLD+ +I GA
Sbjct: 210 LSIHHNEITDEGTKYIVELDQLTHLDISNNQIETEGA----------------------- 246
Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL-KPLKNL 471
K I ++S LT LN+S N + D+ + IS L L SLNVS R++ G+ + K LK+L
Sbjct: 247 -KSISEMSQLTSLNISSNI-IGDEGAQYISHLKKLTSLNVSKCRVSEEGVESIRKQLKHL 304
Query: 472 RSLTLE 477
++L +E
Sbjct: 305 KTLEVE 310
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 142/265 (53%), Gaps = 2/265 (0%)
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
L ++ E S++ L+ LN+ + +I E + +L L L SL++ I +G L+
Sbjct: 48 HLENEVVELISELRELRELNIRYCDIGVEEVKYLTKLDKLHSLDIGINQIYADGAKLLST 107
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
+ +L L++++ ++G G + ++ L L +N++ GI G + + +LKSL++
Sbjct: 108 MKSLTKLDVAECEIGDEGCQSITELYQLTDLNINGDGIGVGGANCIGQMRNLKSLDISNN 167
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
+ G +++ L+ L L++ + I + G LR KNL SL I +TD G K+I +
Sbjct: 168 FFGNYGAKSISELSQLEILNVSYSDIDEVGVYQLRKLKNLTSLSIHHNEITDEGTKYIVE 227
Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 478
L LT L++S N + + + IS ++ L SLN+S++ I G +++ LK L SL +
Sbjct: 228 LDQLTHLDISNN-QIETEGAKSISEMSQLTSLNISSNIIGDEGAQYISHLKKLTSLNVSK 286
Query: 479 CKVTANDIKRLQSRDLPNLVSFRPE 503
C+V+ ++ ++ + L +L + E
Sbjct: 287 CRVSEEGVESIR-KQLKHLKTLEVE 310
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 147/302 (48%), Gaps = 4/302 (1%)
Query: 105 LSNLTSLSFR-RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNI 162
LSN ++ +N+ IT + K L NL KLD+ + +V L L +L LNI
Sbjct: 9 LSNFIFATYAGKNSEITVELAKCICQLKNLKKLDVSYNYHLENEVVELISELRELRELNI 68
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
++C+ I ++K L+ L L SL I +++ G L ++ LT L++ C +
Sbjct: 69 RYCD-IGVEEVKYLTKLDKLHSLDIGINQIYADGAKLLSTMKSLTKLDVAECEIGDEGCQ 127
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
S++ L L LN+N + G ++ +LK L++ N + + L+ LE LN
Sbjct: 128 SITELYQLTDLNINGDGIGVGGANCIGQMRNLKSLDISNNFFGNYGAKSISELSQLEILN 187
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
+ I + G+ L L NL L + ++ G +++ L L +++S I +
Sbjct: 188 VSYSDIDEVGVYQLRKLKNLTSLSIHHNEITDEGTKYIVELDQLTHLDISNNQIETEGAK 247
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR-NFKNLRSL 401
++ +S L SLN+ + I D G ++ L LT L++ R+++ G +R K+L++L
Sbjct: 248 SISEMSQLTSLNISSNIIGDEGAQYISHLKKLTSLNVSKCRVSEEGVESIRKQLKHLKTL 307
Query: 402 EI 403
E+
Sbjct: 308 EV 309
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 94/198 (47%), Gaps = 6/198 (3%)
Query: 299 LCNLKCLELS-DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
L NLK L++S + + + + +S L L +N+ + I ++ L L L SL++
Sbjct: 35 LKNLKKLDVSYNYHLENEVVELISELRELRELNIRYCDIGVEEVKYLTKLDKLHSLDIGI 94
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
QI G L+++ LT LD+ I D G + L L I G G+ G I
Sbjct: 95 NQIYADGAKLLSTMKSLTKLDVAECEIGDEGCQSITELYQLTDLNINGDGIGVGGANCIG 154
Query: 418 DLSSLTLLNLSQNC--NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
+ +L L++S N N K+ IS L+ L LNVS S I G+ L+ LKNL SL+
Sbjct: 155 QMRNLKSLDISNNFFGNYGAKS---ISELSQLEILNVSYSDIDEVGVYQLRKLKNLTSLS 211
Query: 476 LESCKVTANDIKRLQSRD 493
+ ++T K + D
Sbjct: 212 IHHNEITDEGTKYIVELD 229
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
Q +L S+D+S + + G + + S L+ L+ ++ I + G+ LR L NLTSLS
Sbjct: 155 QMRNLKSLDISNNFFGNYGAKSISELSQLEILNVSYS-DIDEVGVYQLRKLKNLTSLSI- 212
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+N IT +G K L L LD+ N I K
Sbjct: 213 HHNEITDEGTKYIVELDQLTHLDISN-------------------------NQIETEGAK 247
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
+S ++ L SL IS + + D G Y+ L+KLT LN+ C V+ ++S+
Sbjct: 248 SISEMSQLTSLNISSNIIGDEGAQYISHLKKLTSLNVSKCRVSEEGVESI 297
>gi|290980851|ref|XP_002673145.1| predicted protein [Naegleria gruberi]
gi|284086726|gb|EFC40401.1| predicted protein [Naegleria gruberi]
Length = 468
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 155/336 (46%), Gaps = 3/336 (0%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
G +H+ + LT+L NN I +G K L NL L++ G + L +L
Sbjct: 128 GAKHVSEMKQLTNLYVNANN-IGTEGAKFLRELKNLTYLNISENDIGVEGAKYISELKQL 186
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
L+I + N T+ K +S L L +L I + + G Y+ L +L +LN+ +
Sbjct: 187 TDLDISYNNIGTEG-AKYISDLKQLTTLDIESNNIGTEGAKYISELNQLQVLNISYSSLG 245
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
+S + L +L ++ + +G + S++ L L + N+I DE H+ +
Sbjct: 246 DKGAQYISEMKQLTHLYISDSLIRSEGAKYISEMKQLTNLFIENNDIDDEGAKHISTMKE 305
Query: 278 LESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
L L + I DEG L+ L NL L + D ++G+ G +HLS L NL SI +S+T I
Sbjct: 306 LTKLYMQGNRLISDEGAKYLSELKNLTVLFIGDNRIGNEGAKHLSELKNLTSIYVSYTEI 365
Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
D + L+ L+ L L + I G +++L LT L + I + GA Y+ K
Sbjct: 366 GDEGAKYLSELNKLTILQIGYNGIGAEGAKHISNLKELTMLKIQYNNIGNEGAKYISELK 425
Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
L L+I + G ++ + LT L + N +
Sbjct: 426 QLTDLDISYNNIGTEGADYLSQMKQLTHLEIETNSD 461
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 92/332 (27%), Positives = 158/332 (47%), Gaps = 12/332 (3%)
Query: 53 ASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE---HLRGLSNLT 109
S+ L ++ ++ +++ G L++ NL L+ I +D G+E ++ L LT
Sbjct: 132 VSEMKQLTNLYVNANNIGTEGAKFLRELKNLTYLN----ISENDIGVEGAKYISELKQLT 187
Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCIT 169
L NN I +G K + L L LD+E G + L +L+ LNI + +
Sbjct: 188 DLDISYNN-IGTEGAKYISDLKQLTTLDIESNNIGTEGAKYISELNQLQVLNISYS-SLG 245
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
D + +S + L L IS S + G Y+ +++LT L +E + +S +
Sbjct: 246 DKGAQYISEMKQLTHLYISDSLIRSEGAKYISEMKQLTNLFIENNDIDDEGAKHISTMKE 305
Query: 230 L--FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
L Y+ NR +SD+G + S++ +L VL +G N I +E HL L NL S+ +
Sbjct: 306 LTKLYMQGNRL-ISDEGAKYLSELKNLTVLFIGDNRIGNEGAKHLSELKNLTSIYVSYTE 364
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
IGDEG L+ L L L++ +G+ G +H+S L L + + + I + + ++ L
Sbjct: 365 IGDEGAKYLSELNKLTILQIGYNGIGAEGAKHISNLKELTMLKIQYNNIGNEGAKYISEL 424
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
L L++ I G L+ + LTHL++
Sbjct: 425 KQLTDLDISYNNIGTEGADYLSQMKQLTHLEI 456
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 120/239 (50%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
+G + S++ L L + N I E L+ L NL LN+ IG EG ++ L L
Sbjct: 127 EGAKHVSEMKQLTNLYVNANNIGTEGAKFLRELKNLTYLNISENDIGVEGAKYISELKQL 186
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L++S +G+ G +++S L L ++++ I + ++ L+ L+ LN+ + D
Sbjct: 187 TDLDISYNNIGTEGAKYISDLKQLTTLDIESNNIGTEGAKYISELNQLQVLNISYSSLGD 246
Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
G ++ + LTHL + + I GA Y+ K L +L I + D G KHI + L
Sbjct: 247 KGAQYISEMKQLTHLYISDSLIRSEGAKYISEMKQLTNLFIENNDIDDEGAKHISTMKEL 306
Query: 423 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
T L + N ++D+ + +S L L L + ++RI + G +HL LKNL S+ + ++
Sbjct: 307 TKLYMQGNRLISDEGAKYLSELKNLTVLFIGDNRIGNEGAKHLSELKNLTSIYVSYTEI 365
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 90/180 (50%), Gaps = 1/180 (0%)
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
+G G +H+S + L ++ ++ I + L L +L LN+ I G ++ L
Sbjct: 124 IGVEGAKHVSEMKQLTNLYVNANNIGTEGAKFLRELKNLTYLNISENDIGVEGAKYISEL 183
Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
LT LD+ I GA Y+ + K L +L+I + G K+I +L+ L +LN+S
Sbjct: 184 KQLTDLDISYNNIGTEGAKYISDLKQLTTLDIESNNIGTEGAKYISELNQLQVLNISY-S 242
Query: 432 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 491
+L DK + IS + L L +S+S I S G +++ +K L +L +E+ + K + +
Sbjct: 243 SLGDKGAQYISEMKQLTHLYISDSLIRSEGAKYISEMKQLTNLFIENNDIDDEGAKHIST 302
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 119/252 (47%), Gaps = 17/252 (6%)
Query: 52 IASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG 104
I ++G+ +S +++S S + D G ++ + L L + + I G +++
Sbjct: 220 IGTEGAKYISELNQLQVLNISYSSLGDKGAQYISEMKQLTHLYISDSL-IRSEGAKYISE 278
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNI 162
+ LT+L F NN I +G K + + L KL ++ R G K L +L++L +
Sbjct: 279 MKQLTNL-FIENNDIDDEGAKHISTMKELTKLYMQGNRLISDEGA----KYLSELKNLTV 333
Query: 163 KWC--NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+ N I + K LS L NL S+ +S +++ D G YL L KLT+L + + A
Sbjct: 334 LFIGDNRIGNEGAKHLSELKNLTSIYVSYTEIGDEGAKYLSELNKLTILQIGYNGIGAEG 393
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
+S L L L + + ++G + S++ L L++ +N I E +L + L
Sbjct: 394 AKHISNLKELTMLKIQYNNIGNEGAKYISELKQLTDLDISYNNIGTEGADYLSQMKQLTH 453
Query: 281 LNLDSCGIGDEG 292
L +++ +EG
Sbjct: 454 LEIETNSDAEEG 465
>gi|421897032|ref|ZP_16327415.1| type III effector gala6 protein [Ralstonia solanacearum MolK2]
gi|206588197|emb|CAQ18765.1| type III effector gala6 protein [Ralstonia solanacearum MolK2]
Length = 625
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 149/479 (31%), Positives = 217/479 (45%), Gaps = 35/479 (7%)
Query: 3 PRDISQQIFNELV-YSRCLTEVSLEAFRDCALQDLCLGQYPGVN------DKWMDVIASQ 55
PR +++ EL SR + V+ RD A+ LG+YP + + ++ + +
Sbjct: 103 PRRAMREVNRELRNASRAV--VTHLTIRDPAMF-AHLGKYPALTSVRFKGELTLEALKAL 159
Query: 56 GSSLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
+ +D+S G V+++GL HL L+SL N I+I G L ++LTSLS
Sbjct: 160 PPGVEHLDISRCTGRGVSNAGLAHLA-TRPLKSLSLN-GIEIDAEGARLLATCASLTSLS 217
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL--------MKLESLNIKW 164
+I + A A ++ LDL VN+ G L SLN+
Sbjct: 218 LT-GCSIGDRAATALAQSRSIASLDLS---------VNMIGPDGARALASAPLLSLNLH- 266
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N I D L+ LKSL S + + D+G+ LT LNL G + A +L
Sbjct: 267 NNGIGDEGALALATSGTLKSLNASNNGIGDAGVLGFADNTVLTQLNLAGNMIGPAGARAL 326
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
SL L+L+ +L D G + + SL LNL NEI D+ L T L+SLNL
Sbjct: 327 RRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNLRHNEIGDDGTEALARNTTLKSLNLS 386
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
IG G L G L+ L+L + G L+ T+L S++L I D R L
Sbjct: 387 YNPIGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLGSNRIGDDGARAL 446
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
A +L L+L I D G AL LT L+L+G + D GAA L L SL +
Sbjct: 447 ATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAALAQHPRLTSLNLG 506
Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
+ G +H+ ++LT L+LS+N + + E +S T L +LNVS + I G R
Sbjct: 507 RNRIGPNGAQHLAKSATLTELDLSEN-RIGPEGAEALSLSTVLTTLNVSGNAIGEKGAR 564
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 121/413 (29%), Positives = 174/413 (42%), Gaps = 41/413 (9%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
HL LTS+ F+ +T + +KA + LD+ RCT G V+ GL L
Sbjct: 133 FAHLGKYPALTSVRFK--GELTLEALKALP--PGVEHLDISRCT---GRGVSNAGLAHLA 185
Query: 159 SLNIKWCNC----ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
+ +K + I + L+ +L SL ++ + D L + + L+L
Sbjct: 186 TRPLKSLSLNGIEIDAEGARLLATCASLTSLSLTGCSIGDRAATALAQSRSIASLDLS-- 243
Query: 215 PVTAACLDSLSALGS--LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
V D AL S L LNL+ + D+G + G+LK LN N I D ++
Sbjct: 244 -VNMIGPDGARALASAPLLSLNLHNNGIGDEGALALATSGTLKSLNASNNGIGDAGVLGF 302
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
T L LNL IG G L +L L+LS ++G +G + L+G +L S+NL
Sbjct: 303 ADNTVLTQLNLAGNMIGPAGARALRRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNLR 362
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL-------FGA--- 382
I D LA ++LKSLNL I G AL T L LDL +GA
Sbjct: 363 HNEIGDDGTEALARNTTLKSLNLSYNPIGFWGAGALGGSTTLRELDLRCCAIDPYGASAL 422
Query: 383 --------------RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
RI D GA L + L L++ + DAG + + SLT LNL
Sbjct: 423 ARNTSLASLHLGSNRIGDDGARALATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLY 482
Query: 429 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
N + D ++ L SLN+ +RI G +HL L L L ++
Sbjct: 483 GN-EVDDDGAAALAQHPRLTSLNLGRNRIGPNGAQHLAKSATLTELDLSENRI 534
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 99/337 (29%), Positives = 149/337 (44%), Gaps = 4/337 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ LLS++L + + D G + L L+SL+ + I D G+ + LT L+
Sbjct: 258 APLLSLNLHNNGIGDEGALALATSGTLKSLNASNN-GIGDAGVLGFADNTVLTQLNLA-G 315
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N I G +A +L +LDL G L G L SLN++ N I D + L
Sbjct: 316 NMIGPAGARALRRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNLR-HNEIGDDGTEAL 374
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ T LKSL +S + + G L G L L+L C + +L+ SL L+L
Sbjct: 375 ARNTTLKSLNLSYNPIGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLG 434
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
++ DDG + +L +L+L N I D L G +L SLNL + D+G L
Sbjct: 435 SNRIGDDGARALATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAAL 494
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
L L L ++G +G +HL+ L ++LS I L+ + L +LN+
Sbjct: 495 AQHPRLTSLNLGRNRIGPNGAQHLAKSATLTELDLSENRIGPEGAEALSLSTVLTTLNVS 554
Query: 357 ARQITDTGLAALTSL-TGLTHLDLFGARITDSGAAYL 392
I + G A T LT LD R ++GA L
Sbjct: 555 GNAIGEKGARAFAEKSTSLTSLDARNNRRGEAGAKML 591
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 133/469 (28%), Positives = 198/469 (42%), Gaps = 41/469 (8%)
Query: 11 FNELVYSRCLTEVSLEAFR--DCALQDL----CLGQYPGVNDKWMDVIASQGSSLLSVDL 64
+ L R E++LEA + ++ L C G+ GV++ + +A++ L S+ L
Sbjct: 139 YPALTSVRFKGELTLEALKALPPGVEHLDISRCTGR--GVSNAGLAHLATR--PLKSLSL 194
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
+G ++ G L C++L SL C I D L ++ SL N I G
Sbjct: 195 NGIEIDAEGARLLATCASLTSLSLTGC-SIGDRAATALAQSRSIASLDLSVN-MIGPDGA 252
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
+A A L+ L+L G + L L+SLN N I D+ + + T L
Sbjct: 253 RALAS-APLLSLNLHNNGIGDEGALALATSGTLKSLNAS-NNGIGDAGVLGFADNTVLTQ 310
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L ++ + + +G L+ LT L+L + A L+ SL LNL ++ DDG
Sbjct: 311 LNLAGNMIGPAGARALRRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNLRHNEIGDDG 370
Query: 245 CEKFSKIGSLKVLNLGFNEITDE------------------CLVHLKGL------TNLES 280
E ++ +LK LNL +N I C + G T+L S
Sbjct: 371 TEALARNTTLKSLNLSYNPIGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLAS 430
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
L+L S IGD+G L L L+LS + +G + L+G +L S+NL + D
Sbjct: 431 LHLGSNRIGDDGARALATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDG 490
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
LA L SLNL +I G L LT LDL RI GA L L +
Sbjct: 491 AAALAQHPRLTSLNLGRNRIGPNGAQHLAKSATLTELDLSENRIGPEGAEALSLSTVLTT 550
Query: 401 LEICGGGLTDAGVKHIKDLS-SLTLLNLSQN--CNLTDKTLELISGLTG 446
L + G + + G + + S SLT L+ N K LE + LTG
Sbjct: 551 LNVSGNAIGEKGARAFAEKSTSLTSLDARNNRRGEAGAKMLEANTRLTG 599
>gi|290980745|ref|XP_002673092.1| predicted protein [Naegleria gruberi]
gi|284086673|gb|EFC40348.1| predicted protein [Naegleria gruberi]
Length = 498
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 96/395 (24%), Positives = 182/395 (46%), Gaps = 31/395 (7%)
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR---------------- 143
E L + L L+ N+ I G K L L L + C
Sbjct: 98 EILDSMKELKKLNIEYNSNIDPSGFKYICSLEQLTDLYMTFCYFRLPIAKHLPSLKSLTY 157
Query: 144 --IHGGLVNLKG------LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
I G + ++G + +L+ L+I N I K +SGL L L I +++T
Sbjct: 158 LLITGNYIGVEGAKYIGEMKQLKQLHIA-NNNIGPEGAKYISGLEQLTFLNIRANEITVD 216
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G ++ +++LT+LN+ G + +S + L L+++ + ++G + S++ ++
Sbjct: 217 GAKFISEMKQLTVLNIIGNNICDEGAKFISGMKQLTNLDISVNNIGENGAKYVSEMMNIT 276
Query: 256 VLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
LN+GFN I D +C +K LT+L N++S IG G+ ++ L L ++ +
Sbjct: 277 KLNIGFNSINDGVKCFGEMKQLTDL---NVNSRCIGSNGVEYISSFNQLTHLSIAKNLIS 333
Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
H+S + NL +++S I D ++ ++ ++ L LN+ + IT G+ + +
Sbjct: 334 LYEAMHISQMKNLIKLDISDNDIGDNGVQSISEMNQLTELNVSSIDITPIGIQYICKMDN 393
Query: 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
LT+L I GA + K+L L I + D G K I ++ LT L++ N +
Sbjct: 394 LTYLISAHNNIGAKGAKQISEMKHLAQLSIYHNAVGDEGAKFISEMEQLTFLDIGYN-EI 452
Query: 434 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 468
D+ ++ + G+ L LN ++ I+ G ++++ +
Sbjct: 453 GDEGVKFLCGMKQLTRLNTVDNNISDEGEKYIREM 487
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/326 (24%), Positives = 149/326 (45%), Gaps = 9/326 (2%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
G +++ + L L NN I +G K +GL L L++ G + + +L
Sbjct: 169 GAKYIGEMKQLKQLHIANNN-IGPEGAKYISGLEQLTFLNIRANEITVDGAKFISEMKQL 227
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
LNI N I D K +SG+ L +L IS + + ++G Y+ + +T LN+ +
Sbjct: 228 TVLNI-IGNNICDEGAKFISGMKQLTNLDISVNNIGENGAKYVSEMMNITKLNIGFNSIN 286
Query: 218 --AACLDSLSALGSLFYLNLN-RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
C + L L N+N RC + +G E S L L++ N I+ +H+
Sbjct: 287 DGVKCFGEMKQLTDL---NVNSRC-IGSNGVEYISSFNQLTHLSIAKNLISLYEAMHISQ 342
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
+ NL L++ IGD G+ +++ + L L +S + G++++ + NL + +
Sbjct: 343 MKNLIKLDISDNDIGDNGVQSISEMNQLTELNVSSIDITPIGIQYICKMDNLTYLISAHN 402
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
I ++++ + L L++ + D G ++ + LT LD+ I D G +L
Sbjct: 403 NIGAKGAKQISEMKHLAQLSIYHNAVGDEGAKFISEMEQLTFLDIGYNEIGDEGVKFLCG 462
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLS 420
K L L ++D G K+I++++
Sbjct: 463 MKQLTRLNTVDNNISDEGEKYIREMN 488
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 110/233 (47%), Gaps = 3/233 (1%)
Query: 245 CEKFSKIGSLKVLNLGFNEITDEC-LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
CE + LK LN+ +N D ++ L L L + C +L L +L
Sbjct: 97 CEILDSMKELKKLNIEYNSNIDPSGFKYICSLEQLTDLYMTFCYFRLPIAKHLPSLKSLT 156
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
L ++ +G G +++ + L+ ++++ I + ++GL L LN+ A +IT
Sbjct: 157 YLLITGNYIGVEGAKYIGEMKQLKQLHIANNNIGPEGAKYISGLEQLTFLNIRANEITVD 216
Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
G ++ + LT L++ G I D GA ++ K L +L+I + + G K++ ++ ++T
Sbjct: 217 GAKFISEMKQLTVLNIIGNNICDEGAKFISGMKQLTNLDISVNNIGENGAKYVSEMMNIT 276
Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
LN+ N + ++ + L LNV++ I S G+ ++ L L++
Sbjct: 277 KLNIGFNS--INDGVKCFGEMKQLTDLNVNSRCIGSNGVEYISSFNQLTHLSI 327
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/288 (22%), Positives = 131/288 (45%), Gaps = 3/288 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I+ G + + + LT L+ NN I +G K +G+ L LD+ G +
Sbjct: 212 EITVDGAKFISEMKQLTVLNIIGNN-ICDEGAKFISGMKQLTNLDISVNNIGENGAKYVS 270
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+M + LNI + N I D +K + L L ++ + +G+ Y+ +LT L++
Sbjct: 271 EMMNITKLNIGF-NSINDG-VKCFGEMKQLTDLNVNSRCIGSNGVEYISSFNQLTHLSIA 328
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
++ +S + +L L+++ + D+G + S++ L LN+ +IT + ++
Sbjct: 329 KNLISLYEAMHISQMKNLIKLDISDNDIGDNGVQSISEMNQLTELNVSSIDITPIGIQYI 388
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
+ NL L IG +G ++ + +L L + VG G + +S + L +++
Sbjct: 389 CKMDNLTYLISAHNNIGAKGAKQISEMKHLAQLSIYHNAVGDEGAKFISEMEQLTFLDIG 448
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
+ I D ++ L G+ L LN I+D G + + H+ ++
Sbjct: 449 YNEIGDEGVKFLCGMKQLTRLNTVDNNISDEGEKYIREMNLADHVGIY 496
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 124/268 (46%), Gaps = 6/268 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L +++ G+++ D G + L +LD + I + G +++ + N+T L+
Sbjct: 222 SEMKQLTVLNIIGNNICDEGAKFISGMKQLTNLDISVN-NIGENGAKYVSEMMNITKLNI 280
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLE-RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
N+ G+K F + L L++ RC G+ + +L L+I N I+ +
Sbjct: 281 GFNS--INDGVKCFGEMKQLTDLNVNSRCIG-SNGVEYISSFNQLTHLSIAK-NLISLYE 336
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+S + NL L IS + + D+G+ + + +LT LN+ +T + + + +L Y
Sbjct: 337 AMHISQMKNLIKLDISDNDIGDNGVQSISEMNQLTELNVSSIDITPIGIQYICKMDNLTY 396
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L + G ++ S++ L L++ N + DE + + L L++ IGDEG
Sbjct: 397 LISAHNNIGAKGAKQISEMKHLAQLSIYHNAVGDEGAKFISEMEQLTFLDIGYNEIGDEG 456
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHL 320
+ L G+ L L D + G +++
Sbjct: 457 VKFLCGMKQLTRLNTVDNNISDEGEKYI 484
>gi|300691655|ref|YP_003752650.1| type III effector protein [Ralstonia solanacearum PSI07]
gi|299078715|emb|CBJ51374.1| leucine-rich-repeat type III effector protein (GALA6) [Ralstonia
solanacearum PSI07]
Length = 608
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 150/470 (31%), Positives = 212/470 (45%), Gaps = 21/470 (4%)
Query: 3 PRDISQQIFNELV-YSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWM------DVIASQ 55
PR + + EL SR + V+ RD A+ LG YP + + D + +
Sbjct: 103 PRRAMRAVSRELRDASRAV--VTHLTIRDPAVLR-HLGNYPALKSLRLKGALTLDALKAL 159
Query: 56 GSSLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
L +DLS GS ++ +GL HL L+SL I+I G + L ++L SLS
Sbjct: 160 PPGLEHLDLSRCTGSAMSSAGLAHLA-ARPLKSLCM-IGIEIGVEGAQRLAASTSLASLS 217
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDS 171
I + +A A ++ LDL RI G L G L SLN+ + N I D
Sbjct: 218 LI-GCEIGDRAAEALAASQSIKSLDLS-ANRIGRDGARALAG-APLVSLNL-YSNAIGDE 273
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
+ L+ L SL +S + + D+G L LT LNL+G + +L+ SL
Sbjct: 274 GARALATSRTLTSLNLSSNGIDDAGAGALADNTLLTQLNLQGNRIGRGGAQALANSTSLT 333
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
L+L +L D G + SL L++ NEI D+ L L+SLNL I
Sbjct: 334 DLDLGNNRLGDRGARALAGSKSLTSLSVRGNEIGDKGAKALARNATLKSLNLSYNLISLR 393
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
G+ L G L L+L + SSG L+ +L S+ L I D R LA S+L
Sbjct: 394 GVRALGGSATLSVLDLCACDIDSSGASALARNASLASLYLGSNRIGDRGARALAKNSTLT 453
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
L L I TG AL L LDL G I D GAA L L SL++ G + A
Sbjct: 454 RLALSGNGIHTTGAQALAGNDSLISLDLGGNEIDDDGAAALARHPRLISLDLRGNRIRSA 513
Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
G + + ++L L+LS N + + E +S T L +LNVS++ I AG
Sbjct: 514 GAQQLAKSATLAELDLSAN-RIGAEGAEALSRSTVLTTLNVSDNAIGDAG 562
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 121/412 (29%), Positives = 179/412 (43%), Gaps = 37/412 (8%)
Query: 102 LRGLSNLTSL-SFRRNNAITAQGMKAFAGLINLVKLDLERCT---RIHGGLVNL------ 151
LR L N +L S R A+T +KA L LDL RCT GL +L
Sbjct: 133 LRHLGNYPALKSLRLKGALTLDALKALP--PGLEHLDLSRCTGSAMSSAGLAHLAARPLK 190
Query: 152 -----------KGLMKLE------SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
+G +L SL++ C I D + L+ ++KSL +S +++
Sbjct: 191 SLCMIGIEIGVEGAQRLAASTSLASLSLIGCE-IGDRAAEALAASQSIKSLDLSANRIGR 249
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
G L G L LNL + +L+ +L LNL+ + D G + L
Sbjct: 250 DGARALAG-APLVSLNLYSNAIGDEGARALATSRTLTSLNLSSNGIDDAGAGALADNTLL 308
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
LNL N I L T+L L+L + +GD G L G +L L + ++G
Sbjct: 309 TQLNLQGNRIGRGGAQALANSTSLTDLDLGNNRLGDRGARALAGSKSLTSLSVRGNEIGD 368
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
G + L+ L+S+NLS+ IS +R L G ++L L+L A I +G +AL L
Sbjct: 369 KGAKALARNATLKSLNLSYNLISLRGVRALGGSATLSVLDLCACDIDSSGASALARNASL 428
Query: 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
L L RI D GA L L L + G G+ G + + SL L+L N +
Sbjct: 429 ASLYLGSNRIGDRGARALAKNSTLTRLALSGNGIHTTGAQALAGNDSLISLDLGGN-EID 487
Query: 435 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 486
D ++ L+SL++ +RI SAG + L +S TL ++AN I
Sbjct: 488 DDGAAALARHPRLISLDLRGNRIRSAGAQQLA-----KSATLAELDLSANRI 534
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 108/390 (27%), Positives = 169/390 (43%), Gaps = 7/390 (1%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ D+ + +A+ S+ S+DLS + + G L L SL+ + I D G L
Sbjct: 223 IGDRAAEALAAS-QSIKSLDLSANRIGRDGARALAGAP-LVSLNL-YSNAIGDEGARALA 279
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
LTSL+ +N I G A A L +L+L+ GG L L L++
Sbjct: 280 TSRTLTSLNLS-SNGIDDAGAGALADNTLLTQLNLQGNRIGRGGAQALANSTSLTDLDL- 337
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
N + D + L+G +L SL + +++ D G L L LNL ++ + +
Sbjct: 338 GNNRLGDRGARALAGSKSLTSLSVRGNEIGDKGAKALARNATLKSLNLSYNLISLRGVRA 397
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L +L L+L C + G ++ SL L LG N I D L + L L L
Sbjct: 398 LGGSATLSVLDLCACDIDSSGASALARNASLASLYLGSNRIGDRGARALAKNSTLTRLAL 457
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
GI G L G +L L+L ++ G L+ L S++L I ++
Sbjct: 458 SGNGIHTTGAQALAGNDSLISLDLGGNEIDDDGAAALARHPRLISLDLRGNRIRSAGAQQ 517
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
LA ++L L+L A +I G AL+ T LT L++ I D+GA L +L SL+
Sbjct: 518 LAKSATLAELDLSANRIGAEGAEALSRSTVLTTLNVSDNAIGDAGALALAKSTSLISLDA 577
Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
G+ + G + ++ + LT QN N
Sbjct: 578 RRSGIGEVGARALEANTRLT--GTPQNPNF 605
>gi|46445968|ref|YP_007333.1| hypothetical protein pc0334 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399609|emb|CAF23058.1| hypothetical protein pc0334 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 616
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 126/239 (52%), Gaps = 9/239 (3%)
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL--DSCGIGDEGLVNLTGLCNLKC 304
+++ + + +L L E+TD L HL L NL LNL D + D GL +LT L NL+
Sbjct: 314 EYAYLTDIHLLALKSWELTDARLAHLAPLVNLRHLNLSGDMSNLTDAGLAHLTPLVNLQH 373
Query: 305 LELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQIT 361
L L ++ GL HL L NL+ +NL ++D L L L +L+ LNL ++T
Sbjct: 374 LNLHWCDKLTDDGLAHLRSLVNLQHLNLHCCNKLTDAGLAHLRPLVNLQHLNLSKCPKLT 433
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGA--AYLRNFKNLRSLEICG-GGLTDAGVKHIKD 418
D GLA LT L L HLDL + +GA AYL +L+ L +C LTD G+ H+
Sbjct: 434 DAGLAHLTPLVNLQHLDLSWCPLNFTGAGLAYLAPLIDLQYLNLCCCNELTDIGLMHLTP 493
Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS-NSRITSAGLRHLKPLKNLRSLTL 476
L +L L+LS NLTD L ++ L L LN+ +T GL HL L NLR L L
Sbjct: 494 LVNLQHLDLSGCDNLTDAGLMHLTSLVNLQHLNLRCCDNLTKTGLMHLTSLVNLRQLVL 552
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 149/295 (50%), Gaps = 48/295 (16%)
Query: 11 FNELVYSRCLTEVSLEAFRDCALQDLCLGQY-PGVNDKWMDVIASQGSSLLSVDLSG--S 67
F+E Y LT++ L A + L D L P VN L ++LSG S
Sbjct: 312 FSEYAY---LTDIHLLALKSWELTDARLAHLAPLVN-------------LRHLNLSGDMS 355
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL NLQ L+ ++C +++D GL HLR L NL L+ N +T G+
Sbjct: 356 NLTDAGLAHLTPLVNLQHLNLHWCDKLTDDGLAHLRSLVNLQHLNLHCCNKLTDAGLAHL 415
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNC-ITDSDMKPLSGLTNLKSL 185
L+NL L+L +C ++ GL +L L+ L+ L++ WC T + + L+ L +L+ L
Sbjct: 416 RPLVNLQHLNLSKCPKLTDAGLAHLTPLVNLQHLDLSWCPLNFTGAGLAYLAPLIDLQYL 475
Query: 186 QI-SCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDD 243
+ C+++TD G+ +L L L L+L GC +T A L L++L +L +LNL RC
Sbjct: 476 NLCCCNELTDIGLMHLTPLVNLQHLDLSGCDNLTDAGLMHLTSLVNLQHLNL-RC----- 529
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD--SCGIGDEGLVNL 296
C+ +K G L+HL L NL L L S + + GL +L
Sbjct: 530 -CDNLTKTG----------------LMHLTSLVNLRQLVLSWYSPDLNEAGLAHL 567
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 101/283 (35%), Positives = 145/283 (51%), Gaps = 30/283 (10%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L + E + + N I + + LT++ L + ++TD+ +A+L L L LNL G
Sbjct: 293 LTEFEKIINYFANAIEGLNFSEYAYLTDIHLLALKSWELTDARLAHLAPLVNLRHLNLSG 352
Query: 214 --CPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLG-FNEITDECL 269
+T A L L+ L +L +LNL+ C +L+DDG + +L+ LNL N++TD L
Sbjct: 353 DMSNLTDAGLAHLTPLVNLQHLNLHWCDKLTDDGLAHLRSLVNLQHLNLHCCNKLTDAGL 412
Query: 270 VHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
HL+ L NL+ LNL C + D GL +LT L NL+ L+LS
Sbjct: 413 AHLRPLVNLQHLNLSKCPKLTDAGLAHLTPLVNLQHLDLS-------------------W 453
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGA-RITD 386
L+FTG L LA L L+ LNL ++TD GL LT L L HLDL G +TD
Sbjct: 454 CPLNFTG---AGLAYLAPLIDLQYLNLCCCNELTDIGLMHLTPLVNLQHLDLSGCDNLTD 510
Query: 387 SGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLS 428
+G +L + NL+ L + C LT G+ H+ L +L L LS
Sbjct: 511 AGLMHLTSLVNLQHLNLRCCDNLTKTGLMHLTSLVNLRQLVLS 553
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 103/286 (36%), Positives = 143/286 (50%), Gaps = 42/286 (14%)
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL--NRCQLSDDGCEKFSKIG 252
S AYL + LL L+ +T A L L+ L +L +LNL + L+D G + +
Sbjct: 313 SEYAYLTDIH---LLALKSWELTDARLAHLAPLVNLRHLNLSGDMSNLTDAGLAHLTPLV 369
Query: 253 SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD- 309
+L+ LNL + +++TD+ L HL+ L NL+ LNL C + D GL +L L NL+ L LS
Sbjct: 370 NLQHLNLHWCDKLTDDGLAHLRSLVNLQHLNLHCCNKLTDAGLAHLRPLVNLQHLNLSKC 429
Query: 310 TQVGSSGLRHLSGLTNLESINLS-----FTGISDGSLRKLAGLSSLKSLNLDA-RQITDT 363
++ +GL HL+ L NL+ ++LS FTG L LA L L+ LNL ++TD
Sbjct: 430 PKLTDAGLAHLTPLVNLQHLDLSWCPLNFTG---AGLAYLAPLIDLQYLNLCCCNELTDI 486
Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
GL LT L L HLDL G LTDAG+ H+ L +L
Sbjct: 487 GLMHLTPLVNLQHLDLSGC-----------------------DNLTDAGLMHLTSLVNLQ 523
Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVS--NSRITSAGLRHLKP 467
LNL NLT L ++ L L L +S + + AGL HL P
Sbjct: 524 HLNLRCCDNLTKTGLMHLTSLVNLRQLVLSWYSPDLNEAGLAHLIP 569
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 95/165 (57%), Gaps = 6/165 (3%)
Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL--DARQITDTGLAALTSLTGLTHLD 378
+ LT++ + L ++D L LA L +L+ LNL D +TD GLA LT L L HL+
Sbjct: 316 AYLTDIHLLALKSWELTDARLAHLAPLVNLRHLNLSGDMSNLTDAGLAHLTPLVNLQHLN 375
Query: 379 LFGA-RITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436
L ++TD G A+LR+ NL+ L + C LTDAG+ H++ L +L LNLS+ LTD
Sbjct: 376 LHWCDKLTDDGLAHLRSLVNLQHLNLHCCNKLTDAGLAHLRPLVNLQHLNLSKCPKLTDA 435
Query: 437 TLELISGLTGLVSLNVSNSRI--TSAGLRHLKPLKNLRSLTLESC 479
L ++ L L L++S + T AGL +L PL +L+ L L C
Sbjct: 436 GLAHLTPLVNLQHLDLSWCPLNFTGAGLAYLAPLIDLQYLNLCCC 480
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 102/188 (54%), Gaps = 7/188 (3%)
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS--FTGISDGSLRKLAGLSSLKSLNLD 356
L ++ L L ++ + L HL+ L NL +NLS + ++D L L L +L+ LNL
Sbjct: 318 LTDIHLLALKSWELTDARLAHLAPLVNLRHLNLSGDMSNLTDAGLAHLTPLVNLQHLNLH 377
Query: 357 A-RQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGV 413
++TD GLA L SL L HL+L ++TD+G A+LR NL+ L + LTDAG+
Sbjct: 378 WCDKLTDDGLAHLRSLVNLQHLNLHCCNKLTDAGLAHLRPLVNLQHLNLSKCPKLTDAGL 437
Query: 414 KHIKDLSSLTLLNLSQ-NCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNL 471
H+ L +L L+LS N T L ++ L L LN+ + +T GL HL PL NL
Sbjct: 438 AHLTPLVNLQHLDLSWCPLNFTGAGLAYLAPLIDLQYLNLCCCNELTDIGLMHLTPLVNL 497
Query: 472 RSLTLESC 479
+ L L C
Sbjct: 498 QHLDLSGC 505
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 91/175 (52%), Gaps = 5/175 (2%)
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDG-SLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
V SS L S LT E I F +G + + A L+ + L L + ++TD LA L
Sbjct: 282 VVSSLLNQASHLTEFEKIINYFANAIEGLNFSEYAYLTDIHLLALKSWELTDARLAHLAP 341
Query: 371 LTGLTHLDLFG--ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 427
L L HL+L G + +TD+G A+L NL+ L + LTD G+ H++ L +L LNL
Sbjct: 342 LVNLRHLNLSGDMSNLTDAGLAHLTPLVNLQHLNLHWCDKLTDDGLAHLRSLVNLQHLNL 401
Query: 428 SQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKV 481
LTD L + L L LN+S ++T AGL HL PL NL+ L L C +
Sbjct: 402 HCCNKLTDAGLAHLRPLVNLQHLNLSKCPKLTDAGLAHLTPLVNLQHLDLSWCPL 456
>gi|290998898|ref|XP_002682017.1| predicted protein [Naegleria gruberi]
gi|284095643|gb|EFC49273.1| predicted protein [Naegleria gruberi]
Length = 408
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 145/277 (52%), Gaps = 2/277 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SLNI N I K +S +T L SL IS +++ G ++ +++LT L++
Sbjct: 130 MKQLTSLNIS-DNQIGLEGAKYISEMTQLTSLDISVNRIGVEGAKFISEMKQLTSLDISV 188
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ + +S + L L+++ Q+ +G + S++ L L++ N I E +
Sbjct: 189 NRIGVEGVKFISEMKQLTSLDISDNQIGLEGSKYISEMTQLTSLDISVNRIGVEGAKFIS 248
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
+ L SLN+ IG EG+ ++ + L L++SD Q+G G +++S +T L S+++S
Sbjct: 249 EMKQLTSLNISVNRIGVEGVKFISEMKQLTSLDISDNQIGL-GAKYISEMTQLTSLDISV 307
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
I D + ++ + L SL++ QI G ++ +T LT L + RI GA ++
Sbjct: 308 NRIGDEGAKFISEMKQLTSLDICDNQIGVEGAKFISEMTQLTSLVITSNRIGVEGAKFIS 367
Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
K L SL+I G + D GVK I ++ LT LN+S N
Sbjct: 368 EMKQLTSLDISGNRIGDEGVKFISEMKQLTSLNISVN 404
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 144/291 (49%), Gaps = 30/291 (10%)
Query: 215 PVTAACLDSL------SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
V+ LDSL S + L LN++ Q+ +G + S++ L L++ N I E
Sbjct: 112 KVSRRLLDSLEQPKFISEMKQLTSLNISDNQIGLEGAKYISEMTQLTSLDISVNRIGVEG 171
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
+ + L SL++ IG EG+ ++ + L L++SD Q+G G +++S +T L S
Sbjct: 172 AKFISEMKQLTSLDISVNRIGVEGVKFISEMKQLTSLDISDNQIGLEGSKYISEMTQLTS 231
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNL--------------DARQIT-------DTGLAA 367
+++S I + ++ + L SLN+ + +Q+T GL A
Sbjct: 232 LDISVNRIGVEGAKFISEMKQLTSLNISVNRIGVEGVKFISEMKQLTSLDISDNQIGLGA 291
Query: 368 --LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
++ +T LT LD+ RI D GA ++ K L SL+IC + G K I +++ LT L
Sbjct: 292 KYISEMTQLTSLDISVNRIGDEGAKFISEMKQLTSLDICDNQIGVEGAKFISEMTQLTSL 351
Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
++ N + + + IS + L SL++S +RI G++ + +K L SL +
Sbjct: 352 VITSN-RIGVEGAKFISEMKQLTSLDISGNRIGDEGVKFISEMKQLTSLNI 401
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 139/281 (49%), Gaps = 5/281 (1%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIK 163
+ LTSL+ +N I +G K + + L LD+ RI G + + +L SL+I
Sbjct: 130 MKQLTSLNIS-DNQIGLEGAKYISEMTQLTSLDIS-VNRIGVEGAKFISEMKQLTSLDIS 187
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
N I +K +S + L SL IS +++ G Y+ + +LT L++ +
Sbjct: 188 -VNRIGVEGVKFISEMKQLTSLDISDNQIGLEGSKYISEMTQLTSLDISVNRIGVEGAKF 246
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+S + L LN++ ++ +G + S++ L L++ N+I ++ +T L SL++
Sbjct: 247 ISEMKQLTSLNISVNRIGVEGVKFISEMKQLTSLDISDNQIGLGA-KYISEMTQLTSLDI 305
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
IGDEG ++ + L L++ D Q+G G + +S +T L S+ ++ I +
Sbjct: 306 SVNRIGDEGAKFISEMKQLTSLDICDNQIGVEGAKFISEMTQLTSLVITSNRIGVEGAKF 365
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
++ + L SL++ +I D G+ ++ + LT L++ RI
Sbjct: 366 ISEMKQLTSLDISGNRIGDEGVKFISEMKQLTSLNISVNRI 406
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 123/261 (47%), Gaps = 6/261 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ + L S+D+S + + G + + L SLD + +I G++ + + LTSL
Sbjct: 152 SEMTQLTSLDISVNRIGVEGAKFISEMKQLTSLDISVN-RIGVEGVKFISEMKQLTSLDI 210
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSD 172
+N I +G K + + L LD+ RI G + + +L SLNI N I
Sbjct: 211 S-DNQIGLEGSKYISEMTQLTSLDIS-VNRIGVEGAKFISEMKQLTSLNIS-VNRIGVEG 267
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+K +S + L SL IS +++ G Y+ + +LT L++ + +S + L
Sbjct: 268 VKFISEMKQLTSLDISDNQI-GLGAKYISEMTQLTSLDISVNRIGDEGAKFISEMKQLTS 326
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L++ Q+ +G + S++ L L + N I E + + L SL++ IGDEG
Sbjct: 327 LDICDNQIGVEGAKFISEMTQLTSLVITSNRIGVEGAKFISEMKQLTSLDISGNRIGDEG 386
Query: 293 LVNLTGLCNLKCLELSDTQVG 313
+ ++ + L L +S ++G
Sbjct: 387 VKFISEMKQLTSLNISVNRIG 407
>gi|290999671|ref|XP_002682403.1| LRR_RI domain-containing protein [Naegleria gruberi]
gi|284096030|gb|EFC49659.1| LRR_RI domain-containing protein [Naegleria gruberi]
Length = 403
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 152/325 (46%), Gaps = 25/325 (7%)
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
+ L+ ++SL C + +K +S L L L I S + D G+ Y+ L++LT
Sbjct: 104 RKLILMKSLTKLIIRCDDEEGVKYISELKQLTKLTIYGSHIGDEGVRYISELKQLT---- 159
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
YL++ +S+ G + ++ L L + N + +E +
Sbjct: 160 --------------------YLSIPSNGISEYGAKHLRELKQLTTLIIFCNRVGNEGSKY 199
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
+ L L +L++D IG EG L+ L L CL++S +G G +++S + L ++++
Sbjct: 200 ISELKQLTTLSIDENDIGAEGAKYLSELTQLTCLDISSNWLGDEGAKYVSKMKQLTTLHI 259
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
+ I + + ++ L+ LK+L++ I D GL L L LDL RI D GA Y
Sbjct: 260 NSNRIGNEGSKFISSLNQLKNLDICKNDIGDEGLEYFGQLAQLKSLDLSYNRIGDEGAQY 319
Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
L K L L+I L D G I +L L L ++ N + ++ + IS L L L+
Sbjct: 320 LSELKQLIYLDIKTNHLGDKGAMPIGELKKLIYLYINNN-KIRNEGAKYISELKQLTKLD 378
Query: 452 VSNSRITSAGLRHLKPLKNLRSLTL 476
+ N+ IT G ++ +K L LT+
Sbjct: 379 IRNNFITEEGTKYFTEMKQLIDLTI 403
>gi|329905907|ref|ZP_08274287.1| hypothetical protein IMCC9480_2692 [Oxalobacteraceae bacterium
IMCC9480]
gi|327547418|gb|EGF32242.1| hypothetical protein IMCC9480_2692 [Oxalobacteraceae bacterium
IMCC9480]
Length = 552
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 144/484 (29%), Positives = 215/484 (44%), Gaps = 111/484 (22%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
S +TD+GL L + L+ LD C I D GL HL +++LT L+ R+ IT G++
Sbjct: 47 SKLTDAGLASLAPLTALKQLDLGHCTGIGDTGLAHLGNMASLTQLNVRQCTNITDAGLEQ 106
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGL-----------------------MKLESLNI 162
A L L +L+L C RI G+ +LK L +L LN+
Sbjct: 107 LANLPRLARLNLAGCHRITAAGIAHLKKLPLTYLDLSGCSGISNAAIAHLKAHQLTELNL 166
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLK-------------------- 201
C D L+ + L++L +S C+ T+SG+ +L
Sbjct: 167 SDCTGFGDEGFAHLAEVP-LQTLDLSGCTGFTNSGLRFLNKSTLTRLSLRNCTQLDFGAT 225
Query: 202 ----GLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLK 255
G Q L L+L GC + L +L L L +L+L R L+D G E +++ SL+
Sbjct: 226 FRLYGAQSLRHLDLAGCEGLDNTALTALQDL-PLEHLDLARNTFLNDTGLESLAEMTSLR 284
Query: 256 VLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQV 312
LNL G ++TD L HL L L+ L L++C D GL L+ L L+ LEL D +
Sbjct: 285 YLNLSGGADMTDAALAHLAELPALQHLILNNCRRTTDAGLAQLSHL-PLETLELVDCVAL 343
Query: 313 GSSGLRHLSG-LTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAAL- 368
++ L L G L+ ++LS T +SD L LA +++L+ L+L R TD G AL
Sbjct: 344 TNTALARLPGAAATLQKLDLSGCTALSDAGLAHLADITTLRKLDLSWNRNFTDAGAVALR 403
Query: 369 --------------------TSLTG--------------------------LTHLDLFGA 382
T+L+G L DL
Sbjct: 404 ELPLGQLRLNGWIGLTDQGMTALSGMPLQSLGLIGCDNIDGSGLAQLNSRCLQKFDLSHC 463
Query: 383 R-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
R + D YLR L+ L++ G +TDAG+ H+ L LT L+L+ N +TD+ L+
Sbjct: 464 RLLNDDAMIYLRRLP-LKELDLSWCGAITDAGLAHLTGL-QLTRLDLTYNSGVTDEGLKN 521
Query: 441 ISGL 444
+SG+
Sbjct: 522 LSGM 525
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 136/434 (31%), Positives = 214/434 (49%), Gaps = 61/434 (14%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIK 163
+ +LT+L+ N+ +T G+ + A L L +LDL CT I GL +L + L LN++
Sbjct: 35 IRHLTNLNLSNNSKLTDAGLASLAPLTALKQLDLGHCTGIGDTGLAHLGNMASLTQLNVR 94
Query: 164 WCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACL 221
C ITD+ ++ L+ L L L ++ C ++T +GIA+LK L LT L+L GC ++ A +
Sbjct: 95 QCTNITDAGLEQLANLPRLARLNLAGCHRITAAGIAHLKKL-PLTYLDLSGCSGISNAAI 153
Query: 222 DSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL----GF--------------- 261
L A L LNL+ C D+G +++ L+ L+L GF
Sbjct: 154 AHLKA-HQLTELNLSDCTGFGDEGFAHLAEV-PLQTLDLSGCTGFTNSGLRFLNKSTLTR 211
Query: 262 ------NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN--LTGLCNLKCLELS---DT 310
++ L G +L L+L C EGL N LT L +L L +T
Sbjct: 212 LSLRNCTQLDFGATFRLYGAQSLRHLDLAGC----EGLDNTALTALQDLPLEHLDLARNT 267
Query: 311 QVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAAL 368
+ +GL L+ +T+L +NLS ++D +L LA L +L+ L L + R+ TD GLA L
Sbjct: 268 FLNDTGLESLAEMTSLRYLNLSGGADMTDAALAHLAELPALQHLILNNCRRTTDAGLAQL 327
Query: 369 TSLTGLTHLDLFG-ARITDSGAAYLRN-FKNLRSLEICG-GGLTDAGVKHIKDLSSLTLL 425
+ L L L+L +T++ A L L+ L++ G L+DAG+ H+ D+++L L
Sbjct: 328 SHLP-LETLELVDCVALTNTALARLPGAAATLQKLDLSGCTALSDAGLAHLADITTLRKL 386
Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSR------ITSAGLRHLKPLKNLRSLTLESC 479
+LS N N TD +G L L + R +T G+ L + L+SL L C
Sbjct: 387 DLSWNRNFTD------AGAVALRELPLGQLRLNGWIGLTDQGMTALSGMP-LQSLGLIGC 439
Query: 480 -KVTANDIKRLQSR 492
+ + + +L SR
Sbjct: 440 DNIDGSGLAQLNSR 453
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 101/223 (45%), Gaps = 42/223 (18%)
Query: 20 LTEVSLEAFR--DC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLI 75
L+ + LE DC AL + L + PG ++L +DLSG + ++D+GL
Sbjct: 327 LSHLPLETLELVDCVALTNTALARLPGA-----------AATLQKLDLSGCTALSDAGLA 375
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL----- 130
HL D + L+ LD ++ +D G LR L L L +T QGM A +G+
Sbjct: 376 HLADITTLRKLDLSWNRNFTDAGAVALRELP-LGQLRLNGWIGLTDQGMTALSGMPLQSL 434
Query: 131 ---------------IN---LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
+N L K DL C ++ + + L+ L++ WC ITD+
Sbjct: 435 GLIGCDNIDGSGLAQLNSRCLQKFDLSHCRLLNDDAMIYLRRLPLKELDLSWCGAITDAG 494
Query: 173 MKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGC 214
+ L+GL L L ++ S VTD G+ L G+ L L + GC
Sbjct: 495 LAHLTGL-QLTRLDLTYNSGVTDEGLKNLSGM-PLQQLRVLGC 535
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 90/326 (27%), Positives = 135/326 (41%), Gaps = 66/326 (20%)
Query: 56 GSSLLSVDLS-------------------------------------------------- 65
SL +DL+
Sbjct: 231 AQSLRHLDLAGCEGLDNTALTALQDLPLEHLDLARNTFLNDTGLESLAEMTSLRYLNLSG 290
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
G+D+TD+ L HL + LQ L N C + +D GL L L L +L A+T +
Sbjct: 291 GADMTDAALAHLAELPALQHLILNNCRRTTDAGLAQLSHLP-LETLELVDCVALTNTALA 349
Query: 126 AFAG-LINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
G L KLDL CT + GL +L + L L++ W TD+ L L L
Sbjct: 350 RLPGAAATLQKLDLSGCTALSDAGLAHLADITTLRKLDLSWNRNFTDAGAVALRELP-LG 408
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLS 241
L+++ +TD G+ L G+ L L L GC + + L L++ L +L+ C+L
Sbjct: 409 QLRLNGWIGLTDQGMTALSGM-PLQSLGLIGCDNIDGSGLAQLNSR-CLQKFDLSHCRLL 466
Query: 242 DDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLD-SCGIGDEGLVNLTGL 299
+D + + LK L+L + ITD L HL GL L L+L + G+ DEGL NL+G+
Sbjct: 467 NDDAMIYLRRLPLKELDLSWCGAITDAGLAHLTGL-QLTRLDLTYNSGVTDEGLKNLSGM 525
Query: 300 C-----NLKCLELSDTQVGSSGLRHL 320
L C +++ ++GL L
Sbjct: 526 PLQQLRVLGCHQVTPNGFWAAGLERL 551
>gi|290984286|ref|XP_002674858.1| predicted protein [Naegleria gruberi]
gi|284088451|gb|EFC42114.1| predicted protein [Naegleria gruberi]
Length = 385
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 113/201 (56%), Gaps = 2/201 (0%)
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
L NL +LN+ SC IG+EG + L NL L++ + +GS G+++++ L+NL S+N+
Sbjct: 182 LNNLITLNITSCNIGEEGSKEIAKLSNLTELKIDNNNIGSEGVKYIAQLSNLTSLNVYNN 241
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
I +++ L +LK+LN+D I D G ++ L LT L+++ I GA +
Sbjct: 242 NIGTEGAKEIGKLLNLKTLNIDNNYIGDEGAQEISKLINLTSLNMYKNSIGYEGAKAISK 301
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
NLR+L I + + G K I L++LT LN+S N N+ D+ + I+ L+ L L + N
Sbjct: 302 LGNLRALTIYNNYIGEEGAKEISKLTNLTSLNISNN-NIGDEGAKEITKLSNLTGLKIDN 360
Query: 455 SRITSAGLRHLKP-LKNLRSL 474
+ I + ++ LKNL+ L
Sbjct: 361 NNIGYEAAKEIRQLLKNLKYL 381
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 99/196 (50%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+ L +L LN+ C + ++G ++ +K+ +L L + N I E + ++ L+NL SLN+
Sbjct: 179 IGKLNNLITLNITSCNIGEEGSKEIAKLSNLTELKIDNNNIGSEGVKYIAQLSNLTSLNV 238
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
+ IG EG + L NLK L + + +G G + +S L NL S+N+ I +
Sbjct: 239 YNNNIGTEGAKEIGKLLNLKTLNIDNNYIGDEGAQEISKLINLTSLNMYKNSIGYEGAKA 298
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
++ L +L++L + I + G ++ LT LT L++ I D GA + NL L+I
Sbjct: 299 ISKLGNLRALTIYNNYIGEEGAKEISKLTNLTSLNISNNNIGDEGAKEITKLSNLTGLKI 358
Query: 404 CGGGLTDAGVKHIKDL 419
+ K I+ L
Sbjct: 359 DNNNIGYEAAKEIRQL 374
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 86/174 (49%), Gaps = 3/174 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L++++++ ++ + G + SNL L + I G++++ LSNLTSL+ N
Sbjct: 183 NNLITLNITSCNIGEEGSKEIAKLSNLTELKIDNN-NIGSEGVKYIAQLSNLTSLNVYNN 241
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N I +G K L+NL L+++ G + L+ L SLN+ + N I K +
Sbjct: 242 N-IGTEGAKEIGKLLNLKTLNIDNNYIGDEGAQEISKLINLTSLNM-YKNSIGYEGAKAI 299
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
S L NL++L I + + + G + L LT LN+ + ++ L +L
Sbjct: 300 SKLGNLRALTIYNNYIGEEGAKEISKLTNLTSLNISNNNIGDEGAKEITKLSNL 353
>gi|348503268|ref|XP_003439187.1| PREDICTED: hypothetical protein LOC100705990 [Oreochromis
niloticus]
Length = 894
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 121/410 (29%), Positives = 200/410 (48%), Gaps = 23/410 (5%)
Query: 5 DISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDL 64
++++ + N + + R L +LE F C +Q L YP ++ + + + ++L + L
Sbjct: 474 ELAELLLNHMSHERLLHPRTLELFFGCPIQKFVLNSYPYSTNELLRQLRA-FTALKHLSL 532
Query: 65 SGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S +TDSGL L LQ L+ C +++D L+H+ GL NL LS + +T G
Sbjct: 533 VNSPLITDSGLCILSTLVKLQYLNLASCSKLTDSCLQHITGLKNLCFLSLDQTK-VTDAG 591
Query: 124 MKAFAGLIN--LVKLDLERCTRIHGGLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLT 180
M + + L +L L + L L + +L L+IK D+ L+ ++
Sbjct: 592 MVLYLQSVPSCLSQLSLNQTAVTETTLAVLPTSVPQLRLLSIKQTKV---KDLTALAAMS 648
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+L++L + + VT++ + +L LT L L G PV D AL + L L R L
Sbjct: 649 SLQTLNLDGTGVTEASLEHLATHPALTSLTLVGIPVA----DGSHALQIISGLKLTRITL 704
Query: 241 ------SDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+D G S++ L L+L + +ITD+ + HL LT L+ L+L + + D GL
Sbjct: 705 PGRHSVTDSGLSFLSRLTLLSELDLTDYTQITDQGVSHLSTLTRLKKLSLSNTQVTDAGL 764
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRK-LAGLSSLK 351
+L + L+ L L T V S G+ L + L +L+ + L+ T + D +RK L S L
Sbjct: 765 PSLRCMQELQELCLDRTAVTSRGVADLITCLPHLQVLGLASTQVGDNVVRKGLIRCSQLV 824
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
LNL +ITD GL L + L ++L G ++ G A L + N+ S+
Sbjct: 825 KLNLSRTRITDHGLKYLKQMR-LAQVNLDGTGVSLMGIASLLSCTNINSI 873
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 98/312 (31%), Positives = 162/312 (51%), Gaps = 22/312 (7%)
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDS-----------LSALGSLFYLNL-NRCQLSDDG 244
+++ + L TL GCP+ L+S L A +L +L+L N ++D G
Sbjct: 483 MSHERLLHPRTLELFFGCPIQKFVLNSYPYSTNELLRQLRAFTALKHLSLVNSPLITDSG 542
Query: 245 CEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV-NLTGLCN- 301
S + L+ LNL +++TD CL H+ GL NL L+LD + D G+V L + +
Sbjct: 543 LCILSTLVKLQYLNLASCSKLTDSCLQHITGLKNLCFLSLDQTKVTDAGMVLYLQSVPSC 602
Query: 302 LKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
L L L+ T V + L L + + L +++ T + D L LA +SSL++LNLD +
Sbjct: 603 LSQLSLNQTAVTETTLAVLPTSVPQLRLLSIKQTKVKD--LTALAAMSSLQTLNLDGTGV 660
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG---LTDAGVKHIK 417
T+ L L + LT L L G + D G+ L+ L+ I G +TD+G+ +
Sbjct: 661 TEASLEHLATHPALTSLTLVGIPVAD-GSHALQIISGLKLTRITLPGRHSVTDSGLSFLS 719
Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 477
L+ L+ L+L+ +TD+ + +S LT L L++SN+++T AGL L+ ++ L+ L L+
Sbjct: 720 RLTLLSELDLTDYTQITDQGVSHLSTLTRLKKLSLSNTQVTDAGLPSLRCMQELQELCLD 779
Query: 478 SCKVTANDIKRL 489
VT+ + L
Sbjct: 780 RTAVTSRGVADL 791
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 111/355 (31%), Positives = 182/355 (51%), Gaps = 39/355 (10%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
++AF L +L ++ T GL L L+KL+ LN+ C+ +TDS ++ ++GL NL
Sbjct: 521 LRAFTALKHLSLVNSPLIT--DSGLCILSTLVKLQYLNLASCSKLTDSCLQHITGLKNLC 578
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L + +KVTD+G+ +L L+ P +CL LS LN+ +++
Sbjct: 579 FLSLDQTKVTDAGM----------VLYLQSVP---SCLSQLS---------LNQTAVTET 616
Query: 244 GCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
+ + L++L++ ++ D L L +++L++LNLD G+ + L +L L
Sbjct: 617 TLAVLPTSVPQLRLLSIKQTKVKD--LTALAAMSSLQTLNLDGTGVTEASLEHLATHPAL 674
Query: 303 KCLELSDTQV--GSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNL-DAR 358
L L V GS L+ +SGL L I L ++D L L+ L+ L L+L D
Sbjct: 675 TSLTLVGIPVADGSHALQIISGL-KLTRITLPGRHSVTDSGLSFLSRLTLLSELDLTDYT 733
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH-IK 417
QITD G++ L++LT L L L ++TD+G LR + L+ L + +T GV I
Sbjct: 734 QITDQGVSHLSTLTRLKKLSLSNTQVTDAGLPSLRCMQELQELCLDRTAVTSRGVADLIT 793
Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGL---TGLVSLNVSNSRITSAGLRHLKPLK 469
L L +L L+ + + D + GL + LV LN+S +RIT GL++LK ++
Sbjct: 794 CLPHLQVLGLA-STQVGDNVVR--KGLIRCSQLVKLNLSRTRITDHGLKYLKQMR 845
>gi|386333663|ref|YP_006029833.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
gi|334196112|gb|AEG69297.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
Length = 629
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 148/485 (30%), Positives = 219/485 (45%), Gaps = 30/485 (6%)
Query: 2 LPRDISQQIFNEL--VYSRCLTEVSLE------------AFRDCALQDLCLGQYPGVNDK 47
LP ++ QQI + R + EV+ E R+ A+ LG+YP +
Sbjct: 91 LPPELWQQIGSSAGARPRRAMREVNRELRNASRAVVTHLTIRNPAMFG-QLGKYPALKSV 149
Query: 48 W------MDVIASQGSSLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGG 98
++ + + + +D+S GS V+++GL L L+SL N I+I G
Sbjct: 150 RFKGALTLEALKALPPGVEHLDISRCTGSGVSNAGLALLA-TRPLKSLSLN-GIEIDAEG 207
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
L ++LTSLS +I + A A ++ LDL G L G L
Sbjct: 208 ARLLATCTSLTSLSLT-GCSIGDRAATALARSRSIASLDLSVNMIGPDGARALAG-APLA 265
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
SLN+ N I D L+ LKSL S + + D+G+ LT LNL G +
Sbjct: 266 SLNLH-NNGIGDEGALALATSGTLKSLNASNNGIGDAGVLGFADNAVLTQLNLAGNMIGP 324
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
A +L SL L+L+ +L D G + + SL LNL NEI D+ L T L
Sbjct: 325 AGARALRCNTSLTELDLSTNRLGDAGAQVLAANRSLTSLNLRHNEIGDDGTEALARNTTL 384
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
+SLNL IG G L G L+ L+L + G L+ T+L S++L I D
Sbjct: 385 KSLNLSYNPIGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLGSNRIGD 444
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
R +A +L L+L I D G AL LT L+L+G + D GAA L + L
Sbjct: 445 SGARAIATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAALAHHPRL 504
Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
SL + + G +H+ ++LT L+LS+N + + + +S T L +LNVS++ I
Sbjct: 505 TSLNLGRNRIGPNGAQHLAKSATLTELDLSEN-RIGPEGADALSLSTVLTTLNVSDNAIG 563
Query: 459 SAGLR 463
G R
Sbjct: 564 EKGAR 568
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 119/418 (28%), Positives = 174/418 (41%), Gaps = 75/418 (17%)
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
S R A+T + +KA + LD+ RCT G V+ GL L +
Sbjct: 148 SVRFKGALTLEALKALP--PGVEHLDISRCT---GSGVSNAGLALLAT------------ 190
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
+PL KSL ++ ++ G L LT L+L GC + +L+ S+
Sbjct: 191 --RPL------KSLSLNGIEIDAEGARLLATCTSLTSLSLTGCSIGDRAATALARSRSIA 242
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
L+L+ + DG + L LNL N I DE + L L+SLN + GIGD
Sbjct: 243 SLDLSVNMIGPDGARALAGA-PLASLNLHNNGIGDEGALALATSGTLKSLNASNNGIGDA 301
Query: 292 G------------------LVNLTGLCNLKC------LELSDTQVGSSGLRHLSGLTNLE 327
G ++ G L+C L+LS ++G +G + L+ +L
Sbjct: 302 GVLGFADNAVLTQLNLAGNMIGPAGARALRCNTSLTELDLSTNRLGDAGAQVLAANRSLT 361
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
S+NL I D LA ++LKSLNL I G AL T L LDL I
Sbjct: 362 SLNLRHNEIGDDGTEALARNTTLKSLNLSYNPIGFWGAGALGGSTTLRELDLRCCAIDPY 421
Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG---- 443
GA+ L +L SL + + D+G + I +LTLL+LS+N N+ D + ++G
Sbjct: 422 GASALARNTSLASLHLGSNRIGDSGARAIATSRTLTLLDLSRN-NIHDAGAQALAGNGSL 480
Query: 444 ----LTG----------------LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
L G L SLN+ +RI G +HL L L L ++
Sbjct: 481 TSLNLYGNEVDDDGAAALAHHPRLTSLNLGRNRIGPNGAQHLAKSATLTELDLSENRI 538
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 125/454 (27%), Positives = 186/454 (40%), Gaps = 56/454 (12%)
Query: 37 CLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD 96
C G GV++ + ++A++ L S+ L+G ++ G L C++L SL C I D
Sbjct: 175 CTGS--GVSNAGLALLATR--PLKSLSLNGIEIDAEGARLLATCTSLTSLSLTGC-SIGD 229
Query: 97 GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 156
L ++ SL N I G +A AG L L+L G + L
Sbjct: 230 RAATALARSRSIASLDLSVN-MIGPDGARALAG-APLASLNLHNNGIGDEGALALATSGT 287
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L+SLN N I D+ + + L L ++ + + +G L+ LT L+L +
Sbjct: 288 LKSLNAS-NNGIGDAGVLGFADNAVLTQLNLAGNMIGPAGARALRCNTSLTELDLSTNRL 346
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE--------- 267
A L+A SL LNL ++ DDG E ++ +LK LNL +N I
Sbjct: 347 GDAGAQVLAANRSLTSLNLRHNEIGDDGTEALARNTTLKSLNLSYNPIGFWGAGALGGST 406
Query: 268 ---------CLVHLKGL------TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
C + G T+L SL+L S IGD
Sbjct: 407 TLRELDLRCCAIDPYGASALARNTSLASLHLGSNRIGD---------------------- 444
Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
SG R ++ L ++LS I D + LAG SL SLNL ++ D G AAL
Sbjct: 445 --SGARAIATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAALAHHP 502
Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
LT L+L RI +GA +L L L++ + G + + LT LN+S N
Sbjct: 503 RLTSLNLGRNRIGPNGAQHLAKSATLTELDLSENRIGPEGADALSLSTVLTTLNVSDNAI 562
Query: 433 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 466
T L SL+ N+ + AG + L+
Sbjct: 563 GEKGARAFAEKSTSLTSLDARNNGMGEAGAKMLE 596
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 105/379 (27%), Positives = 161/379 (42%), Gaps = 30/379 (7%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
G+ L S++L + + D G + L L+SL+ + I D G+ + LT L+
Sbjct: 261 GAPLASLNLHNNGIGDEGALALATSGTLKSLNASNN-GIGDAGVLGFADNAVLTQLNLA- 318
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N I G +A +L +LDL G L L SLN++ N I D +
Sbjct: 319 GNMIGPAGARALRCNTSLTELDLSTNRLGDAGAQVLAANRSLTSLNLRH-NEIGDDGTEA 377
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ T LKSL +S + + G L G L L+L C + +L+ SL L+L
Sbjct: 378 LARNTTLKSLNLSYNPIGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHL 437
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
++ D G + +L +L+L N I D L G +L SLNL + D+G
Sbjct: 438 GSNRIGDSGARAIATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAA 497
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
L L L L ++G +G +H LA ++L L+L
Sbjct: 498 LAHHPRLTSLNLGRNRIGPNGAQH------------------------LAKSATLTELDL 533
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGA-AYLRNFKNLRSLEICGGGLTDAGVK 414
+I G AL+ T LT L++ I + GA A+ +L SL+ G+ +AG K
Sbjct: 534 SENRIGPEGADALSLSTVLTTLNVSDNAIGEKGARAFAEKSTSLTSLDARNNGMGEAGAK 593
Query: 415 HIKDLSSLTLLNLSQNCNL 433
++ + LT QN N
Sbjct: 594 MLEANTRLT--GTQQNPNF 610
>gi|290970785|ref|XP_002668255.1| predicted protein [Naegleria gruberi]
gi|284081550|gb|EFC35511.1| predicted protein [Naegleria gruberi]
Length = 295
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 146/291 (50%), Gaps = 1/291 (0%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L SL I+ + + D G+ + +++LT L++ + +S + L L+++
Sbjct: 1 MKQLTSLNINYNNIGDEGVKLISEMKQLTSLDINYNNIGVEGAKYISEMKQLTSLDISDN 60
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ +G + S++ L LN+ NEI E ++ + L SL+++ IG EG ++
Sbjct: 61 NIGVEGVKLISEMKQLTSLNIRINEIGVEGAKYISEMKQLTSLDINCNNIGVEGAKYISE 120
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
+ L L++S +G G + +S + L S+N+ I D + ++ + L SLN+
Sbjct: 121 MKQLTSLDISWNNIGVEGAKLISEMKQLTSLNIRRNEIGDEGAKYISEMKQLTSLNISDN 180
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
I G ++ + LT L++ I D GA Y+ K L SL I + D G K+I +
Sbjct: 181 NIGVEGAKLISEMKQLTSLNINWNEIGDEGAKYISEMKQLTSLNISWNKIGDEGAKYISE 240
Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 469
+ LT L+++ N + + +LIS + L SLN++++ I G ++L +K
Sbjct: 241 MKQLTSLDINWN-KIGVEGAKLISEMKQLTSLNINDNNIGVEGAKYLSEMK 290
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 140/277 (50%), Gaps = 1/277 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SLNI + N I D +K +S + L SL I+ + + G Y+ +++LT L++
Sbjct: 1 MKQLTSLNINYNN-IGDEGVKLISEMKQLTSLDINYNNIGVEGAKYISEMKQLTSLDISD 59
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ + +S + L LN+ ++ +G + S++ L L++ N I E ++
Sbjct: 60 NNIGVEGVKLISEMKQLTSLNIRINEIGVEGAKYISEMKQLTSLDINCNNIGVEGAKYIS 119
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
+ L SL++ IG EG ++ + L L + ++G G +++S + L S+N+S
Sbjct: 120 EMKQLTSLDISWNNIGVEGAKLISEMKQLTSLNIRRNEIGDEGAKYISEMKQLTSLNISD 179
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
I + ++ + L SLN++ +I D G ++ + LT L++ +I D GA Y+
Sbjct: 180 NNIGVEGAKLISEMKQLTSLNINWNEIGDEGAKYISEMKQLTSLNISWNKIGDEGAKYIS 239
Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
K L SL+I + G K I ++ LT LN++ N
Sbjct: 240 EMKQLTSLDINWNKIGVEGAKLISEMKQLTSLNINDN 276
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 125/244 (51%), Gaps = 7/244 (2%)
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
LN+ +N I DE + + + L SL+++ IG EG ++ + L L++SD +G G
Sbjct: 7 LNINYNNIGDEGVKLISEMKQLTSLDINYNNIGVEGAKYISEMKQLTSLDISDNNIGVEG 66
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
++ +S + L S+N+ I + ++ + L SL+++ I G ++ + LT
Sbjct: 67 VKLISEMKQLTSLNIRINEIGVEGAKYISEMKQLTSLDINCNNIGVEGAKYISEMKQLTS 126
Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436
LD+ I GA + K L SL I + D G K+I ++ LT LN+S N N+ +
Sbjct: 127 LDISWNNIGVEGAKLISEMKQLTSLNIRRNEIGDEGAKYISEMKQLTSLNISDN-NIGVE 185
Query: 437 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV------TANDIKRLQ 490
+LIS + L SLN++ + I G +++ +K L SL + K+ +++K+L
Sbjct: 186 GAKLISEMKQLTSLNINWNEIGDEGAKYISEMKQLTSLNISWNKIGDEGAKYISEMKQLT 245
Query: 491 SRDL 494
S D+
Sbjct: 246 SLDI 249
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 132/271 (48%), Gaps = 1/271 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SL+I + N + K +S + L SL IS + + G+ + +++LT LN+
Sbjct: 25 MKQLTSLDINYNNIGVEG-AKYISEMKQLTSLDISDNNIGVEGVKLISEMKQLTSLNIRI 83
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ +S + L L++N + +G + S++ L L++ +N I E +
Sbjct: 84 NEIGVEGAKYISEMKQLTSLDINCNNIGVEGAKYISEMKQLTSLDISWNNIGVEGAKLIS 143
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
+ L SLN+ IGDEG ++ + L L +SD +G G + +S + L S+N+++
Sbjct: 144 EMKQLTSLNIRRNEIGDEGAKYISEMKQLTSLNISDNNIGVEGAKLISEMKQLTSLNINW 203
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
I D + ++ + L SLN+ +I D G ++ + LT LD+ +I GA +
Sbjct: 204 NEIGDEGAKYISEMKQLTSLNISWNKIGDEGAKYISEMKQLTSLDINWNKIGVEGAKLIS 263
Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424
K L SL I + G K++ ++ T+
Sbjct: 264 EMKQLTSLNINDNNIGVEGAKYLSEMKRKTI 294
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 145/287 (50%), Gaps = 12/287 (4%)
Query: 41 YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF---NFCIQISDG 97
Y + D+ + +I S+ L S+D++ +++ G ++ + L SLD N ++
Sbjct: 11 YNNIGDEGVKLI-SEMKQLTSLDINYNNIGVEGAKYISEMKQLTSLDISDNNIGVE---- 65
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMK 156
G++ + + LTSL+ R N I +G K + + L LD+ C I G + + +
Sbjct: 66 GVKLISEMKQLTSLNIRI-NEIGVEGAKYISEMKQLTSLDI-NCNNIGVEGAKYISEMKQ 123
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L SL+I W N + K +S + L SL I +++ D G Y+ +++LT LN+ +
Sbjct: 124 LTSLDISWNNIGVEG-AKLISEMKQLTSLNIRRNEIGDEGAKYISEMKQLTSLNISDNNI 182
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
+S + L LN+N ++ D+G + S++ L LN+ +N+I DE ++ +
Sbjct: 183 GVEGAKLISEMKQLTSLNINWNEIGDEGAKYISEMKQLTSLNISWNKIGDEGAKYISEMK 242
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
L SL+++ IG EG ++ + L L ++D +G G ++LS +
Sbjct: 243 QLTSLDINWNKIGVEGAKLISEMKQLTSLNINDNNIGVEGAKYLSEM 289
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 100/202 (49%), Gaps = 25/202 (12%)
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
+ L SLN++ IGDEG+ ++ + L L+++ +G G +++S + L S+++S
Sbjct: 1 MKQLTSLNINYNNIGDEGVKLISEMKQLTSLDINYNNIGVEGAKYISEMKQLTSLDISDN 60
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
I ++ ++ + L SLN+ +I + G+ GA Y+
Sbjct: 61 NIGVEGVKLISEMKQLTSLNI---RINEIGV---------------------EGAKYISE 96
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
K L SL+I + G K+I ++ LT L++S N N+ + +LIS + L SLN+
Sbjct: 97 MKQLTSLDINCNNIGVEGAKYISEMKQLTSLDISWN-NIGVEGAKLISEMKQLTSLNIRR 155
Query: 455 SRITSAGLRHLKPLKNLRSLTL 476
+ I G +++ +K L SL +
Sbjct: 156 NEIGDEGAKYISEMKQLTSLNI 177
>gi|290980468|ref|XP_002672954.1| predicted protein [Naegleria gruberi]
gi|284086534|gb|EFC40210.1| predicted protein [Naegleria gruberi]
Length = 349
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 126/248 (50%), Gaps = 7/248 (2%)
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
L ++ + L LN+ ++ +G + S++ L LN+ +N I DE ++ + L S
Sbjct: 96 LKFVTEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNISYNVIGDEGAKYISEMKQLIS 155
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
LN+ IGDEG ++ + L L++S +G G +++SG+ L S+N+ +T I
Sbjct: 156 LNIRENEIGDEGAKYISEMKQLTSLDISYNIIGDEGAKYISGMKQLTSLNIYYTLIGIEG 215
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
+ ++ + L SLN+ +I G+ ++ + LT L++ R D GA ++ K L S
Sbjct: 216 AKFISEMKQLTSLNISENEIGIEGVKYISEMKQLTSLNISYNRTGDEGAKFISEMKQLTS 275
Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
L ICG VK I ++ LT LN+ N + + + IS + L SLN+ +RI
Sbjct: 276 LNICG------KVKFISEMKQLTSLNIRGN-RIGVEGAKYISEMKQLTSLNIRGNRIGDQ 328
Query: 461 GLRHLKPL 468
GL H L
Sbjct: 329 GLNHENSL 336
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 112/236 (47%), Gaps = 22/236 (9%)
Query: 267 ECLVHLKGLTNLE---SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
E + LK +T ++ SLN+ IG EG ++ + L L +S +G G +++S +
Sbjct: 91 EAIEQLKFVTEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNISYNVIGDEGAKYISEM 150
Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
L S+N+ I D + ++ + L SL++ I D G ++ + LT L+++
Sbjct: 151 KQLISLNIRENEIGDEGAKYISEMKQLTSLDISYNIIGDEGAKYISGMKQLTSLNIYYTL 210
Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN------------- 430
I GA ++ K L SL I + GVK+I ++ LT LN+S N
Sbjct: 211 IGIEGAKFISEMKQLTSLNISENEIGIEGVKYISEMKQLTSLNISYNRTGDEGAKFISEM 270
Query: 431 -----CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
N+ K ++ IS + L SLN+ +RI G +++ +K L SL + ++
Sbjct: 271 KQLTSLNICGK-VKFISEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNIRGNRI 325
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 144/305 (47%), Gaps = 16/305 (5%)
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF--AGLINLVKLDLERCTRIHG 146
N C IS ++ S L + F+ N IT + ++ F + +N + +D++ T +
Sbjct: 36 NNCTLISKQFFNVIKERSKLV-IQFKNN--ITEKRVELFMKSQFMNSI-VDVKFSTNLLE 91
Query: 147 GLVNLK---GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
+ LK + +L SLNI+ N I K +S + L SL IS + + D G Y+ +
Sbjct: 92 AIEQLKFVTEMKQLTSLNIR-GNRIGVEGAKYISEMKQLTSLNISYNVIGDEGAKYISEM 150
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
++L LN+ + +S + L L+++ + D+G + S + L LN+ +
Sbjct: 151 KQLISLNIRENEIGDEGAKYISEMKQLTSLDISYNIIGDEGAKYISGMKQLTSLNIYYTL 210
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
I E + + L SLN+ IG EG+ ++ + L L +S + G G + +S +
Sbjct: 211 IGIEGAKFISEMKQLTSLNISENEIGIEGVKYISEMKQLTSLNISYNRTGDEGAKFISEM 270
Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
L S+N+ G ++ ++ + L SLN+ +I G ++ + LT L++ G R
Sbjct: 271 KQLTSLNIC------GKVKFISEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNIRGNR 324
Query: 384 ITDSG 388
I D G
Sbjct: 325 IGDQG 329
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 112/243 (46%), Gaps = 20/243 (8%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
L+ + + LTSL+ R N I +G K + + L L++ G + + +L
Sbjct: 96 LKFVTEMKQLTSLNIR-GNRIGVEGAKYISEMKQLTSLNISYNVIGDEGAKYISEMKQLI 154
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
SLNI+ N I D K +S + L SL IS + + D G Y+ G+++LT LN+ +
Sbjct: 155 SLNIR-ENEIGDEGAKYISEMKQLTSLDISYNIIGDEGAKYISGMKQLTSLNIYYTLIGI 213
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE---CLVHLKGL 275
+S + L LN++ ++ +G + S++ L LN+ +N DE + +K L
Sbjct: 214 EGAKFISEMKQLTSLNISENEIGIEGVKYISEMKQLTSLNISYNRTGDEGAKFISEMKQL 273
Query: 276 TNLE---------------SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
T+L SLN+ IG EG ++ + L L + ++G GL H
Sbjct: 274 TSLNICGKVKFISEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNIRGNRIGDQGLNHE 333
Query: 321 SGL 323
+ L
Sbjct: 334 NSL 336
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 113/263 (42%), Gaps = 49/263 (18%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+K ++ + L SL I +++ G Y+ +++LT LN+ + +S + L
Sbjct: 94 EQLKFVTEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNISYNVIGDEGAKYISEMKQL 153
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
LN+ ++ D+G + S++ L L++ +N I DE ++ G+ L SLN+ IG
Sbjct: 154 ISLNIRENEIGDEGAKYISEMKQLTSLDISYNIIGDEGAKYISGMKQLTSLNIYYTLIGI 213
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD------------ 338
EG ++ + L L +S+ ++G G++++S + L S+N+S+ D
Sbjct: 214 EGAKFISEMKQLTSLNISENEIGIEGVKYISEMKQLTSLNISYNRTGDEGAKFISEMKQL 273
Query: 339 ------------GSLRKLAGLS------------------SLKSLNLDARQITDTGLAAL 368
+++L L+ L SLN+ +I D GL
Sbjct: 274 TSLNICGKVKFISEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNIRGNRIGDQGLNHE 333
Query: 369 TSLTGLTHLDLFGARITDSGAAY 391
SL L+GA + +Y
Sbjct: 334 NSL-------LWGANKFNKSESY 349
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 75/149 (50%), Gaps = 1/149 (0%)
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
L+ + + L SLN+ +I G ++ + LT L++ I D GA Y+ K L S
Sbjct: 96 LKFVTEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNISYNVIGDEGAKYISEMKQLIS 155
Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
L I + D G K+I ++ LT L++S N + D+ + ISG+ L SLN+ + I
Sbjct: 156 LNIRENEIGDEGAKYISEMKQLTSLDISYNI-IGDEGAKYISGMKQLTSLNIYYTLIGIE 214
Query: 461 GLRHLKPLKNLRSLTLESCKVTANDIKRL 489
G + + +K L SL + ++ +K +
Sbjct: 215 GAKFISEMKQLTSLNISENEIGIEGVKYI 243
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 93/191 (48%), Gaps = 9/191 (4%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L+S+++ +++ D G ++ + L SLD ++ I I D G +++ G+ LTSL+
Sbjct: 148 SEMKQLISLNIRENEIGDEGAKYISEMKQLTSLDISYNI-IGDEGAKYISGMKQLTSLNI 206
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
I +G K + + L L++ G+ + + +L SLNI + N D
Sbjct: 207 YY-TLIGIEGAKFISEMKQLTSLNISENEIGIEGVKYISEMKQLTSLNISY-NRTGDEGA 264
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL I C KV ++ +++LT LN+ G + +S + L L
Sbjct: 265 KFISEMKQLTSLNI-CGKV-----KFISEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSL 318
Query: 234 NLNRCQLSDDG 244
N+ ++ D G
Sbjct: 319 NIRGNRIGDQG 329
>gi|46447550|ref|YP_008915.1| hypothetical protein pc1916 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401191|emb|CAF24640.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 310
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 121/222 (54%), Gaps = 8/222 (3%)
Query: 278 LESLN-LDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLS-FT 334
+E LN L+ + + L+ L NLK L L Q + GL HL+ LT L+ ++LS
Sbjct: 78 IEGLNFLNQAYLTNAHLLALKDCKNLKALYLEACQALTDDGLEHLTLLTALQHLDLSGCW 137
Query: 335 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL 392
++D L L L L+ L L+A +TD GL LT LT L HLDL +TD+G A+L
Sbjct: 138 NLTDAGLVHLTPLVGLQHLKLNACYNLTDDGLVHLTPLTALQHLDLSDCMNLTDAGLAHL 197
Query: 393 RNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
+ L+ L + C LTDAG+ H+ L+ L L LS NLTD L + LT L LN
Sbjct: 198 KPLTALQHLGLSCCENLTDAGLAHLAPLTGLQYLALSDCMNLTDDGLVHLKPLTALQHLN 257
Query: 452 VSNSR-ITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQS 491
+ N R +T AGL HL PLK L+ L L C KVT + R ++
Sbjct: 258 LRNCRNVTDAGLAHLTPLKALQQLNLRRCDKVTNTGLARFKT 299
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 130/275 (47%), Gaps = 56/275 (20%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L+ + +T++ L+ LKDC NL++L C ++D GLEHL L+ L L
Sbjct: 84 LNQAYLTNAHLLALKDCKNLKALYLEACQALTDDGLEHLTLLTALQHLDL---------- 133
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+G NL GLV+L L+ L+ L + C +TD + L+ LT L+
Sbjct: 134 ----SGCWNLTD----------AGLVHLTPLVGLQHLKLNACYNLTDDGLVHLTPLTALQ 179
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-L 240
L +S C +TD+G+A+LK L L L L C +T A L L+ L L YL L+ C L
Sbjct: 180 HLDLSDCMNLTDAGLAHLKPLTALQHLGLSCCENLTDAGLAHLAPLTGLQYLALSDCMNL 239
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 299
+DDG LVHLK LT L+ LNL +C + D GL +LT L
Sbjct: 240 TDDG------------------------LVHLKPLTALQHLNLRNCRNVTDAGLAHLTPL 275
Query: 300 CNLKCLELSD----TQVGSSGLRHLSGLTNLESIN 330
L+ L L T G + + L+ NL IN
Sbjct: 276 KALQQLNLRRCDKVTNTGLARFKTLAASLNLRIIN 310
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 134/262 (51%), Gaps = 31/262 (11%)
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVL 257
+ K ++ L LN +T A L +L +L L L CQ L+DDG E + + +L+ L
Sbjct: 74 FSKKIEGLNFLN--QAYLTNAHLLALKDCKNLKALYLEACQALTDDGLEHLTLLTALQHL 131
Query: 258 NL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGS 314
+L G +TD LVHL L L+ L L++C + D+GLV+LT L L+ L+LSD +
Sbjct: 132 DLSGCWNLTDAGLVHLTPLVGLQHLKLNACYNLTDDGLVHLTPLTALQHLDLSDCMNLTD 191
Query: 315 SGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLT 372
+GL HL LT L+ + LS ++D L LA L+ L+ L L D +TD GL L LT
Sbjct: 192 AGLAHLKPLTALQHLGLSCCENLTDAGLAHLAPLTGLQYLALSDCMNLTDDGLVHLKPLT 251
Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
L HL+L RN +N+ TDAG+ H+ L +L LNL +
Sbjct: 252 ALQHLNL-------------RNCRNV----------TDAGLAHLTPLKALQQLNLRRCDK 288
Query: 433 LTDKTLELISGLTGLVSLNVSN 454
+T+ L L ++L + N
Sbjct: 289 VTNTGLARFKTLAASLNLRIIN 310
>gi|283777859|ref|YP_003368614.1| serine/threonine protein kinase [Pirellula staleyi DSM 6068]
gi|283436312|gb|ADB14754.1| serine/threonine protein kinase [Pirellula staleyi DSM 6068]
Length = 1487
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 128/429 (29%), Positives = 205/429 (47%), Gaps = 52/429 (12%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL-------T 109
S L +DLS + +TD GL L S L+ L + +SD GLE L +L T
Sbjct: 743 SQLAELDLSSTKITDQGLTRLLALSKLERLYLSDN-SLSDNGLEQLAMAKSLRLLVASGT 801
Query: 110 SLSFRRNNAITAQGMKAF-----AGLINLVKLDL-ERCTR-----IHGGLVNLK------ 152
LS R + +TA + A + V L L ER R + G +V +
Sbjct: 802 MLSERGHGVLTAALPQTEITWDGADMQRQVALVLLERGARLSVADMRGNIVPVVARREDL 861
Query: 153 --GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
G +K+ ++ C I D D+KPL L +L+SL +S +K+T +G+A L GL L ++
Sbjct: 862 PIGRLKVLKVDFAGCRTIGDDDLKPLVALADLESLALSGTKITPAGLANLHGLASLKSID 921
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-------- 262
L P+T A +++L+A L C++ + E K+ + VL++G
Sbjct: 922 LGTLPLTTASVETLAA-------ALPDCKI--ERREPADKLVARWVLSVGGKCTITSDES 972
Query: 263 ----EITDECLVHLKGLTNLESLNLDSCGIG-DEGLVNLTGLCNLKCLELSDTQVGSSGL 317
E+T V + ++E +NL C IG D L ++ L NLK L L + + + L
Sbjct: 973 ASQVELTSATTVLPEAAIHVEKINLTDCKIGPDAPLASIAELANLKSLLLVGSDITDAQL 1032
Query: 318 RHLSGLTNLESINLSFTGISDGSLRK-LAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
++GL +L ++LS T ++ ++ LA L L+ L L ++ L A+T+L L+H
Sbjct: 1033 TSIAGLKSLSELSLSDTAVTAPAVNGLLAQLPQLQRLYLSGTKVDRGVLVAVTNLPKLSH 1092
Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436
L L G + S + L+ L L++ GL+D + + LSSL L + +N LTD
Sbjct: 1093 LSLAGIEVAPSDLSLLKKCPQLEWLDLSSTGLSDEASQQLVGLSSLRELAVPKN-PLTDA 1151
Query: 437 -TLELISGL 444
ELI+ +
Sbjct: 1152 GQEELIAAM 1160
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 106/364 (29%), Positives = 176/364 (48%), Gaps = 33/364 (9%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L+G +V S L LK C L+ LD + +SD + L GLS+L L+ +N A
Sbjct: 1095 LAGIEVAPSDLSLLKKCPQLEWLDLS-STGLSDEASQQLVGLSSLRELAVPKNPLTDAGQ 1153
Query: 124 MKAFAGLIN--LV--KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP---- 175
+ A + N +V LD +R ++ +G ++L++ +T P
Sbjct: 1154 EELIAAMPNCHVVGDPLDPQRLAARW--ILEKRGTVELDT------GAVTSPKELPRDKC 1205
Query: 176 ------LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
L+ L NLK+ ++ I + G +L L L +T A L ++ L
Sbjct: 1206 HVLAIDLAELANLKAAEV---------IQVIAGCSELESLRLSDTAITDADLAAIGKLKL 1256
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L L L ++DDG K +++ L+VL++ IT L + + ++L+ LNL + +
Sbjct: 1257 LKKLYLANLAITDDGLAKLAELELLEVLDVSGGRITGAGLANFRSASSLQELNLSNTMLT 1316
Query: 290 DEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
D L + + +L L++S + V +GL+ L+GLT L S+ L T ++D + LA +
Sbjct: 1317 DPNLAAIAPMTSLISLDMSACRGVSDAGLKKLAGLTQLRSLGLRGTKLTDAAAESLASYA 1376
Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
L+ L+LD+ I D+G+ L SLT L L L +TD G A L K+LRS+ + +
Sbjct: 1377 KLEQLDLDSTSIGDSGVEKLLSLTSLRRLVLAKTSVTDGGVASLAKLKDLRSVSLVRTSV 1436
Query: 409 TDAG 412
T+A
Sbjct: 1437 TEAA 1440
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 100/348 (28%), Positives = 162/348 (46%), Gaps = 47/348 (13%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ L L+ L +S +KV + + L KL+ L+L G V + L L L +L+L
Sbjct: 1060 LAQLPQLQRLYLSGTKVDRGVLVAVTNLPKLSHLSLAGIEVAPSDLSLLKKCPQLEWLDL 1119
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITD---ECLV------HLKG------------ 274
+ LSD+ ++ + SL+ L + N +TD E L+ H+ G
Sbjct: 1120 SSTGLSDEASQQLVGLSSLRELAVPKNPLTDAGQEELIAAMPNCHVVGDPLDPQRLAARW 1179
Query: 275 --------------LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
+T+ + L D C + ++L L NLK E+ ++ +
Sbjct: 1180 ILEKRGTVELDTGAVTSPKELPRDKCHVL---AIDLAELANLKAAEV---------IQVI 1227
Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
+G + LES+ LS T I+D L + L LK L L ITD GLA L L L LD+
Sbjct: 1228 AGCSELESLRLSDTAITDADLAAIGKLKLLKKLYLANLAITDDGLAKLAELELLEVLDVS 1287
Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
G RIT +G A R+ +L+ L + LTD + I ++SL L++S ++D L+
Sbjct: 1288 GGRITGAGLANFRSASSLQELNLSNTMLTDPNLAAIAPMTSLISLDMSACRGVSDAGLKK 1347
Query: 441 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
++GLT L SL + +++T A L L L L+S + + +++
Sbjct: 1348 LAGLTQLRSLGLRGTKLTDAAAESLASYAKLEQLDLDSTSIGDSGVEK 1395
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 131/517 (25%), Positives = 204/517 (39%), Gaps = 94/517 (18%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
+L++D G VTDS L L+ L+ L I+D G+ L L +L LS R A
Sbjct: 673 ILAIDFEGRGVTDSDLASLELAPGLRQLSL-AATPITDTGIASLAKLKSLAKLSLART-A 730
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT +G+++ A L L +LDL GL L L KLE L + N ++D+ ++ L+
Sbjct: 731 ITNKGLESLARLSQLAELDLSSTKITDQGLTRLLALSKLERLYLS-DNSLSDNGLEQLAM 789
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+L+ L S + +++ G L T + +G + L G+ + R
Sbjct: 790 AKSLRLLVASGTMLSERGHGVLTAALPQTEITWDGADMQRQVALVLLERGARLSVADMRG 849
Query: 239 QLSDDGCEKFS-KIGSLKVLNLGF---NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+ + IG LKVL + F I D+ L L L +LESL L I GL
Sbjct: 850 NIVPVVARREDLPIGRLKVLKVDFAGCRTIGDDDLKPLVALADLESLALSGTKITPAGLA 909
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSG-----------------------------LTN 325
NL GL +LK ++L + ++ + L+ +T+
Sbjct: 910 NLHGLASLKSIDLGTLPLTTASVETLAAALPDCKIERREPADKLVARWVLSVGGKCTITS 969
Query: 326 LES----------------------INLSFTGI-SDGSLRKLAGLSSLKSLNLDARQITD 362
ES INL+ I D L +A L++LKSL L ITD
Sbjct: 970 DESASQVELTSATTVLPEAAIHVEKINLTDCKIGPDAPLASIAELANLKSLLLVGSDITD 1029
Query: 363 TGLAA-------------------------LTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
L + L L L L L G ++ + N
Sbjct: 1030 AQLTSIAGLKSLSELSLSDTAVTAPAVNGLLAQLPQLQRLYLSGTKVDRGVLVAVTNLPK 1089
Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
L L + G + + + +K L L+LS + L+D+ + + GL+ L L V + +
Sbjct: 1090 LSHLSLAGIEVAPSDLSLLKKCPQLEWLDLS-STGLSDEASQQLVGLSSLRELAVPKNPL 1148
Query: 458 TSAGLRHLKPLKNLRSLTLESCKVTAN--DIKRLQSR 492
T AG L + +C V + D +RL +R
Sbjct: 1149 TDAGQEELI-------AAMPNCHVVGDPLDPQRLAAR 1178
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 124/275 (45%), Gaps = 34/275 (12%)
Query: 253 SLKVLNLGFNE--ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
SL++L + F +TD L L+ L L+L + I D G+ +L L +L L L+ T
Sbjct: 670 SLEILAIDFEGRGVTDSDLASLELAPGLRQLSLAATPITDTGIASLAKLKSLAKLSLART 729
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
+ + GL L+ L+ L ++LS T I+D L +L LS L+ L L ++D GL L
Sbjct: 730 AITNKGLESLARLSQLAELDLSSTKITDQGLTRLLALSKLERLYLSDNSLSDNGLEQLAM 789
Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG----------LTDAGVK-HIKDL 419
L L G +++ G L L EI G L + G + + D+
Sbjct: 790 AKSLRLLVASGTMLSERGHGVL--TAALPQTEITWDGADMQRQVALVLLERGARLSVADM 847
Query: 420 SSLTLLNLSQNCNLT------------------DKTLELISGLTGLVSLNVSNSRITSAG 461
+ +++ +L D L+ + L L SL +S ++IT AG
Sbjct: 848 RGNIVPVVARREDLPIGRLKVLKVDFAGCRTIGDDDLKPLVALADLESLALSGTKITPAG 907
Query: 462 LRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 496
L +L L +L+S+ L + +T ++ L + LP+
Sbjct: 908 LANLHGLASLKSIDLGTLPLTTASVETLAAA-LPD 941
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 3/159 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNL 151
+I+ GL + R S+L L+ N +T + A A + +L+ LD+ C + GL L
Sbjct: 1290 RITGAGLANFRSASSLQELNLS-NTMLTDPNLAAIAPMTSLISLDMSACRGVSDAGLKKL 1348
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
GL +L SL ++ +TD+ + L+ L+ L + + + DSG+ L L L L L
Sbjct: 1349 AGLTQLRSLGLRGTK-LTDAAAESLASYAKLEQLDLDSTSIGDSGVEKLLSLTSLRRLVL 1407
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
VT + SL+ L L ++L R +++ C + K
Sbjct: 1408 AKTSVTDGGVASLAKLKDLRSVSLVRTSVTEAACTELEK 1446
>gi|335058613|gb|AEH26502.1| leucine-rich repeat domain protein [uncultured Acidobacteria
bacterium A11]
Length = 402
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 128/257 (49%), Gaps = 2/257 (0%)
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
S++RN+ + + A L +L+ LDL GL + L LE LN+ +TD+
Sbjct: 136 SYKRNDTLVDAWLDRLADLPDLISLDLANTGVAGPGLKVVGTLKNLERLNLT-LTPVTDA 194
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
++ L+GLTNL+ L ++ +K T G +L L++L N PV A L +S + L
Sbjct: 195 HLEHLAGLTNLRVLSLASAKCTGEGFRFLGKLKQLENANFHFTPVNDAGLAGISTVTGLE 254
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
L + C +D G +K+ +L+ L +G + T + L LT L L+L E
Sbjct: 255 RLEIVHCHFTDAGAPHLAKLVNLERLQIGSRDATGAAIEPLTALTKLRELDLQDNQATAE 314
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
G+ + + + +L+ L + Q+ G ++ L+NLE + + G++D +L A L L+
Sbjct: 315 GVRHASRIPSLRVLRIHG-QIKDEGAASIAQLSNLEILVANNAGLTDDALDHFARLPRLQ 373
Query: 352 SLNLDARQITDTGLAAL 368
L + +ITD LA L
Sbjct: 374 RLEIKGNKITDPALARL 390
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 118/248 (47%), Gaps = 2/248 (0%)
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
A LD L+ L L L+L ++ G + + +L+ LNL +TD L HL GLTNL
Sbjct: 146 AWLDRLADLPDLISLDLANTGVAGPGLKVVGTLKNLERLNLTLTPVTDAHLEHLAGLTNL 205
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
L+L S EG L L L+ T V +GL +S +T LE + + +D
Sbjct: 206 RVLSLASAKCTGEGFRFLGKLKQLENANFHFTPVNDAGLAGISTVTGLERLEIVHCHFTD 265
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
LA L +L+ L + +R T + LT+LT L LDL + T G + +L
Sbjct: 266 AGAPHLAKLVNLERLQIGSRDATGAAIEPLTALTKLRELDLQDNQATAEGVRHASRIPSL 325
Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
R L I G + D G I LS+L +L ++ N LTD L+ + L L L + ++IT
Sbjct: 326 RVLRIH-GQIKDEGAASIAQLSNLEIL-VANNAGLTDDALDHFARLPRLQRLEIKGNKIT 383
Query: 459 SAGLRHLK 466
L L+
Sbjct: 384 DPALARLQ 391
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 120/255 (47%), Gaps = 1/255 (0%)
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
K + + D+ + L+ L +L SL ++ + V G+ + L+ L LNL PVT A L+
Sbjct: 138 KRNDTLVDAWLDRLADLPDLISLDLANTGVAGPGLKVVGTLKNLERLNLTLTPVTDAHLE 197
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
L+ L +L L+L + + +G K+ L+ N F + D L + +T LE L
Sbjct: 198 HLAGLTNLRVLSLASAKCTGEGFRFLGKLKQLENANFHFTPVNDAGLAGISTVTGLERLE 257
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
+ C D G +L L NL+ L++ + + L+ LT L ++L + +R
Sbjct: 258 IVHCHFTDAGAPHLAKLVNLERLQIGSRDATGAAIEPLTALTKLRELDLQDNQATAEGVR 317
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
+ + SL+ L + QI D G A++ L+ L L A +TD + L+ LE
Sbjct: 318 HASRIPSLRVLRIHG-QIKDEGAASIAQLSNLEILVANNAGLTDDALDHFARLPRLQRLE 376
Query: 403 ICGGGLTDAGVKHIK 417
I G +TD + ++
Sbjct: 377 IKGNKITDPALARLQ 391
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 135/302 (44%), Gaps = 35/302 (11%)
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
+SL L L ++LN Q D K + + + D L L L +L SL
Sbjct: 113 ESLHLLDRLTAIDLNDRQSPHDKSYKRN------------DTLVDAWLDRLADLPDLISL 160
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
+L + G+ GL + L NL+ L L+ T V + L HL+GLTNL ++L+ +
Sbjct: 161 DLANTGVAGPGLKVVGTLKNLERLNLTLTPVTDAHLEHLAGLTNLRVLSLASAKCTGEGF 220
Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
R L L L++ N + D GLA ++++TGL L++ TD+GA +L NL L
Sbjct: 221 RFLGKLKQLENANFHFTPVNDAGLAGISTVTGLERLEIVHCHFTDAGAPHLAKLVNLERL 280
Query: 402 EICGGGLTDAGVKHIKDLSSLTLLNLSQNC----------------------NLTDKTLE 439
+I T A ++ + L+ L L+L N + D+
Sbjct: 281 QIGSRDATGAAIEPLTALTKLRELDLQDNQATAEGVRHASRIPSLRVLRIHGQIKDEGAA 340
Query: 440 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 499
I+ L+ L L +N+ +T L H L L+ L ++ K+T + RLQ + LP L
Sbjct: 341 SIAQLSNLEILVANNAGLTDDALDHFARLPRLQRLEIKGNKITDPALARLQ-QALPALEV 399
Query: 500 FR 501
R
Sbjct: 400 VR 401
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 131/285 (45%), Gaps = 30/285 (10%)
Query: 46 DKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL 105
D W+D +A L+S+DL+ + V GL + NL+ L+ ++D LEHL GL
Sbjct: 145 DAWLDRLADL-PDLISLDLANTGVAGPGLKVVGTLKNLERLNLTLT-PVTDAHLEHLAGL 202
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
+NL LS L +CT G L L +LE+ N +
Sbjct: 203 TNLRVLS-----------------------LASAKCT--GEGFRFLGKLKQLENANFHFT 237
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+ D+ + +S +T L+ L+I TD+G +L L L L + T A ++ L+
Sbjct: 238 -PVNDAGLAGISTVTGLERLEIVHCHFTDAGAPHLAKLVNLERLQIGSRDATGAAIEPLT 296
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
AL L L+L Q + +G S+I SL+VL + +I DE + L+NLE L ++
Sbjct: 297 ALTKLRELDLQDNQATAEGVRHASRIPSLRVLRI-HGQIKDEGAASIAQLSNLEILVANN 355
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESI 329
G+ D+ L + L L+ LE+ ++ L L L LE +
Sbjct: 356 AGLTDDALDHFARLPRLQRLEIKGNKITDPALARLQQALPALEVV 400
>gi|320165725|gb|EFW42624.1| hypothetical protein CAOG_07756 [Capsaspora owczarzaki ATCC 30864]
Length = 880
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 134/477 (28%), Positives = 195/477 (40%), Gaps = 55/477 (11%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+N+ W+ I S + L+ LI L+ LD N QI+
Sbjct: 234 LNNNWLSAIPSSAFTGLT-----------ALIQLR-------LDTN---QITTVPANAFS 272
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLN 161
GL+ L L + NN IT AF+G LV+L L + T I L GL L L
Sbjct: 273 GLTALIYL-YLYNNQITTVATNAFSGPTALVQLQLYGNQITTIPSSA--LTGLSALTQLY 329
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL---EGCPVTA 218
+ + N IT SGLT L L++S + +T GL KLT L+L + + A
Sbjct: 330 L-YNNQITSVPANGFSGLTALTDLRLSNNTITSILANAFTGLTKLTYLDLSLNQLTSIPA 388
Query: 219 ACLDSLSALG---------------------SLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
L+AL +L YL LN Q++ F+ + +L L
Sbjct: 389 GAFSGLTALTQLLLFNNWLSAVPSSAFTGLTALIYLYLNNNQITTVAANAFTGLTALVQL 448
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
L N+IT GL+ L L L S I + TGL +L LELS+ Q+ S
Sbjct: 449 QLYGNQITTIPASAFAGLSALVQLYLYSNRITAIFVNAFTGLTHLSLLELSNNQITSLPA 508
Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
+GLT + ++L +S GL++L++L L QIT A T LT L L
Sbjct: 509 NAFAGLTAMTQLSLYNNSLSAVPSSAFTGLTALQALYLYNNQITTVAANAFTGLTALVQL 568
Query: 378 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
L+ +IT A+ L L + +T L+ LT L++S N +T
Sbjct: 569 HLYRNQITTIPASAFAGLSALVQLYLNSNRITTIFANAFPSLTKLTYLDISNN-QITSLP 627
Query: 438 LELISGLTGLVSLNVSN---SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 491
+GLT + L++ N S + S+ L L+ L + V AN L +
Sbjct: 628 ANAFTGLTAMTQLHLYNNLFSTVPSSAFTGLTALQALFLFNNQISSVAANAFTSLTA 684
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 119/414 (28%), Positives = 173/414 (41%), Gaps = 27/414 (6%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+ GL+ L L + NN I + AF+GL L L L I
Sbjct: 142 QITTVPSSAFTGLTALQIL-YLHNNQIATVAINAFSGLTALQTLYLYNNQIITVATNAFS 200
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
GL L+ L + N IT SGL+ L +LQ++ + ++ + GL L L L+
Sbjct: 201 GLAALQVLRLD-TNQITTVPANAFSGLSKLNTLQLNNNWLSAIPSSAFTGLTALIQLRLD 259
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+T ++ S L +L YL L Q++ FS +L L L N+IT L
Sbjct: 260 TNQITTVPANAFSGLTALIYLYLYNNQITTVATNAFSGPTALVQLQLYGNQITTIPSSAL 319
Query: 273 KGLTNLESLNLDSCGI------GDEGLVNL------------------TGLCNLKCLELS 308
GL+ L L L + I G GL L TGL L L+LS
Sbjct: 320 TGLSALTQLYLYNNQITSVPANGFSGLTALTDLRLSNNTITSILANAFTGLTKLTYLDLS 379
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
Q+ S SGLT L + L +S GL++L L L+ QIT A
Sbjct: 380 LNQLTSIPAGAFSGLTALTQLLLFNNWLSAVPSSAFTGLTALIYLYLNNNQITTVAANAF 439
Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
T LT L L L+G +IT A+ L L + +T V L+ L+LL LS
Sbjct: 440 TGLTALVQLQLYGNQITTIPASAFAGLSALVQLYLYSNRITAIFVNAFTGLTHLSLLELS 499
Query: 429 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
N +T +GLT + L++ N+ +++ L L++L L + ++T
Sbjct: 500 NN-QITSLPANAFAGLTAMTQLSLYNNSLSAVPSSAFTGLTALQALYLYNNQIT 552
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 114/467 (24%), Positives = 197/467 (42%), Gaps = 36/467 (7%)
Query: 46 DKWMDVIASQG----SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
+ W+ + S ++L+ + L+ + +T + L L + QI+
Sbjct: 404 NNWLSAVPSSAFTGLTALIYLYLNNNQITTVAANAFTGLTALVQLQL-YGNQITTIPASA 462
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLES 159
GLS L L + +N ITA + AF GL +L L+L + T + GL +
Sbjct: 463 FAGLSALVQL-YLYSNRITAIFVNAFTGLTHLSLLELSNNQITSLPANA--FAGLTAMTQ 519
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L++ + N ++ +GLT L++L + +++T GL L L+L +T
Sbjct: 520 LSL-YNNSLSAVPSSAFTGLTALQALYLYNNQITTVAANAFTGLTALVQLHLYRNQITTI 578
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+ + L +L L LN +++ F + L L++ N+IT GLT +
Sbjct: 579 PASAFAGLSALVQLYLNSNRITTIFANAFPSLTKLTYLDISNNQITSLPANAFTGLTAMT 638
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-------- 331
L+L + TGL L+ L L + Q+ S + LT L + L
Sbjct: 639 QLHLYNNLFSTVPSSAFTGLTALQALFLFNNQISSVAANAFTSLTALIQLQLYGNLITTI 698
Query: 332 ---SFTGISDGSLRKL-------------AGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
+F+G+S +L +L GL++L L LD QIT A + LT L
Sbjct: 699 PAGAFSGLSKLNLLQLYNNWLSAIPSSAFTGLTALTQLRLDTNQITTVPANAFSGLTALI 758
Query: 376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
+L L+G +IT A+ L++L + +T L++L L+LS + +T
Sbjct: 759 YLSLYGNQITTISASAFAGLTALQALYLNDNTITTIAANAFAGLTALNWLDLS-DSQITS 817
Query: 436 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
+ S L L LN+ N+ +++ L L LT+ ++T
Sbjct: 818 IPANVFSSLPALAQLNLYNNWLSAVPTSAFTGLTALTQLTMYGNRIT 864
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 109/417 (26%), Positives = 175/417 (41%), Gaps = 31/417 (7%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV--KLDLERCTRIHGGLVN 150
QI+ GLS L +L NN ++A AF GL L+ +LD + T +
Sbjct: 214 QITTVPANAFSGLSKLNTLQLN-NNWLSAIPSSAFTGLTALIQLRLDTNQITTVPANA-- 270
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
GL L L + + N IT SG T L LQ+ +++T + L GL LT L
Sbjct: 271 FSGLTALIYLYL-YNNQITTVATNAFSGPTALVQLQLYGNQITTIPSSALTGLSALTQLY 329
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L +T+ + S L +L L L+ ++ F+ + L L+L N++T
Sbjct: 330 LYNNQITSVPANGFSGLTALTDLRLSNNTITSILANAFTGLTKLTYLDLSLNQLTSIPAG 389
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
GLT L L L + + TGL L L L++ Q+ + +GLT L +
Sbjct: 390 AFSGLTALTQLLLFNNWLSAVPSSAFTGLTALIYLYLNNNQITTVAANAFTGLTALVQLQ 449
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITD------TGLA------------------ 366
L I+ AGLS+L L L + +IT TGL
Sbjct: 450 LYGNQITTIPASAFAGLSALVQLYLYSNRITAIFVNAFTGLTHLSLLELSNNQITSLPAN 509
Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
A LT +T L L+ ++ ++ L++L + +T L++L L+
Sbjct: 510 AFAGLTAMTQLSLYNNSLSAVPSSAFTGLTALQALYLYNNQITTVAANAFTGLTALVQLH 569
Query: 427 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 483
L +N +T +GL+ LV L ++++RIT+ L L L + + ++T+
Sbjct: 570 LYRN-QITTIPASAFAGLSALVQLYLNSNRITTIFANAFPSLTKLTYLDISNNQITS 625
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 138/336 (41%), Gaps = 14/336 (4%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVN 150
QI+ GL+ L L RN IT AFAGL LV+L L R T I
Sbjct: 550 QITTVAANAFTGLTALVQLHLYRNQ-ITTIPASAFAGLSALVQLYLNSNRITTIFANA-- 606
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS---CSKVTDSGIAYLKGLQKLT 207
L KL L+I N IT +GLT + L + S V S L LQ L
Sbjct: 607 FPSLTKLTYLDIS-NNQITSLPANAFTGLTAMTQLHLYNNLFSTVPSSAFTGLTALQALF 665
Query: 208 LLNLEGCPVTAACLDSLSALGSL-FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
L N + V A SL+AL L Y NL ++ FS + L +L L N ++
Sbjct: 666 LFNNQISSVAANAFTSLTALIQLQLYGNL----ITTIPAGAFSGLSKLNLLQLYNNWLSA 721
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
GLT L L LD+ I +GL L L L Q+ + +GLT L
Sbjct: 722 IPSSAFTGLTALTQLRLDTNQITTVPANAFSGLTALIYLSLYGNQITTISASAFAGLTAL 781
Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+++ L+ I+ + AGL++L L+L QIT +SL L L+L+ ++
Sbjct: 782 QALYLNDNTITTIAANAFAGLTALNWLDLSDSQITSIPANVFSSLPALAQLNLYNNWLSA 841
Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
+ L L + G +T L++L
Sbjct: 842 VPTSAFTGLTALTQLTMYGNRITTISANAFTGLNAL 877
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 94/356 (26%), Positives = 145/356 (40%), Gaps = 50/356 (14%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
G+ T+ + ++N IT+ AF GL L + L+
Sbjct: 56 GIPATTTTLYLQSNQITSISSSAFTGLTALTYMRLD------------------------ 91
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
N IT SGL+ L +LQ++ + L P +A
Sbjct: 92 -TNQITTVPANAFSGLSTLNTLQLNNNW-------------------LSAIPSSA----- 126
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+ L +L L LN Q++ F+ + +L++L L N+I + GLT L++L L
Sbjct: 127 FTGLTALIQLLLNNNQITTVPSSAFTGLTALQILYLHNNQIATVAINAFSGLTALQTLYL 186
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
+ I +GL L+ L L Q+ + SGL+ L ++ L+ +S
Sbjct: 187 YNNQIITVATNAFSGLAALQVLRLDTNQITTVPANAFSGLSKLNTLQLNNNWLSAIPSSA 246
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
GL++L L LD QIT A + LT L +L L+ +IT L L++
Sbjct: 247 FTGLTALIQLRLDTNQITTVPANAFSGLTALIYLYLYNNQITTVATNAFSGPTALVQLQL 306
Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
G +T + LS+LT L L N +T SGLT L L +SN+ ITS
Sbjct: 307 YGNQITTIPSSALTGLSALTQLYLYNN-QITSVPANGFSGLTALTDLRLSNNTITS 361
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 117/277 (42%), Gaps = 3/277 (1%)
Query: 103 RGLSNLTSLSFR--RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+LT L++ NN IT+ AF GL + +L L GL L++L
Sbjct: 605 NAFPSLTKLTYLDISNNQITSLPANAFTGLTAMTQLHLYNNLFSTVPSSAFTGLTALQAL 664
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+ N I+ + LT L LQ+ + +T GL KL LL L ++A
Sbjct: 665 -FLFNNQISSVAANAFTSLTALIQLQLYGNLITTIPAGAFSGLSKLNLLQLYNNWLSAIP 723
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
+ + L +L L L+ Q++ FS + +L L+L N+IT GLT L++
Sbjct: 724 SSAFTGLTALTQLRLDTNQITTVPANAFSGLTALIYLSLYGNQITTISASAFAGLTALQA 783
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
L L+ I GL L L+LSD+Q+ S S L L +NL +S
Sbjct: 784 LYLNDNTITTIAANAFAGLTALNWLDLSDSQITSIPANVFSSLPALAQLNLYNNWLSAVP 843
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
GL++L L + +IT A T L L L
Sbjct: 844 TSAFTGLTALTQLTMYGNRITTISANAFTGLNALVQL 880
>gi|149173873|ref|ZP_01852502.1| hypothetical protein PM8797T_05530 [Planctomyces maris DSM 8797]
gi|148847403|gb|EDL61737.1| hypothetical protein PM8797T_05530 [Planctomyces maris DSM 8797]
Length = 473
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 111/381 (29%), Positives = 170/381 (44%), Gaps = 24/381 (6%)
Query: 117 NAITAQGMKAFAGLINLVKLD-LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N A G F+ + D L TR+ G L + ++ N + + K
Sbjct: 72 NKPEAGGGYYFSNYFDYCSEDELPMLTRVEG----------LRAFDMFDGNSFSPAGWKQ 121
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT---LLN--LEGCPVTAACLDSLSALGSL 230
+ ++ L++ +SC VTD + L+GL +L +LN ++ PV+ L LS+ +L
Sbjct: 122 IGQISGLEAFNVSCQYVTDEHLMGLQGLPQLKDLKILNNCMKQSPVSDQGLQVLSSFPAL 181
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L L+ +++ GCE L+ L L + ITDECL L L NL+ L + D
Sbjct: 182 RRLVLHSREINVRGCELIGDCTELRALEL-WGPITDECLKPLGKLKNLKHLIVVGT-FSD 239
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
GL +L+GL L L L Q+ SGL + L S + + +L++L L L
Sbjct: 240 AGLKHLSGLKQLTRLVLHSDQMTGSGLNSFAEAPELREFGFSGSPAGNATLKQLDQLPGL 299
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
LNL + D L + L L L L + ITD G L KNLR L + +T+
Sbjct: 300 AVLNLSTPSVNDAVLQTMPDLPQLEALSLKNSNITDKGLDALVKVKNLRELVLYSTEITN 359
Query: 411 AGVKHIKDLSSLTLLNLSQNCN---LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 467
AG+ ++ L L LL L + +T K LE LT L L V + +A L+P
Sbjct: 360 AGLIRLEPLQQLRLLVLGNPGHTELITGKGLE---SLTKLSRLEVLDIDYVNAEQLDLRP 416
Query: 468 LKNLRSLTLESCKVTANDIKR 488
L SL ++D+++
Sbjct: 417 LARCSSLVEVILNFGSDDVRK 437
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 125/257 (48%), Gaps = 8/257 (3%)
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN-LDSC----GIGDEGLV 294
S G ++ +I L+ N+ +TDE L+ L+GL L+ L L++C + D+GL
Sbjct: 114 FSPAGWKQIGQISGLEAFNVSCQYVTDEHLMGLQGLPQLKDLKILNNCMKQSPVSDQGLQ 173
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
L+ L+ L L ++ G + T L ++ L + I+D L+ L L +LK L
Sbjct: 174 VLSSFPALRRLVLHSREINVRGCELIGDCTELRALEL-WGPITDECLKPLGKLKNLKHL- 231
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
+ +D GL L+ L LT L L ++T SG LR G +A +K
Sbjct: 232 IVVGTFSDAGLKHLSGLKQLTRLVLHSDQMTGSGLNSFAEAPELREFGFSGSPAGNATLK 291
Query: 415 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
+ L L +LNLS ++ D L+ + L L +L++ NS IT GL L +KNLR L
Sbjct: 292 QLDQLPGLAVLNLS-TPSVNDAVLQTMPDLPQLEALSLKNSNITDKGLDALVKVKNLREL 350
Query: 475 TLESCKVTANDIKRLQS 491
L S ++T + RL+
Sbjct: 351 VLYSTEITNAGLIRLEP 367
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 131/292 (44%), Gaps = 57/292 (19%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
L +D + + C+ Q P V+D+ + V++S +L + L ++ G + DC+ L+
Sbjct: 149 LPQLKDLKILNNCMKQSP-VSDQGLQVLSS-FPALRRLVLHSREINVRGCELIGDCTELR 206
Query: 85 SLDF-----NFCIQ----------------ISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
+L+ + C++ SD GL+HL GL LT L ++ +T G
Sbjct: 207 ALELWGPITDECLKPLGKLKNLKHLIVVGTFSDAGLKHLSGLKQLTRLVL-HSDQMTGSG 265
Query: 124 MKAFA------------------------GLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
+ +FA L L L+L + L + L +LE+
Sbjct: 266 LNSFAEAPELREFGFSGSPAGNATLKQLDQLPGLAVLNLSTPSVNDAVLQTMPDLPQLEA 325
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP---- 215
L++K N ITD + L + NL+ L + +++T++G+ L+ LQ+L LL L G P
Sbjct: 326 LSLKNSN-ITDKGLDALVKVKNLRELVLYSTEITNAGLIRLEPLQQLRLLVL-GNPGHTE 383
Query: 216 -VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL--KVLNLGFNEI 264
+T L+SL+ L L L+++ ++ SL +LN G +++
Sbjct: 384 LITGKGLESLTKLSRLEVLDIDYVNAEQLDLRPLARCSSLVEVILNFGSDDV 435
>gi|406830019|ref|ZP_11089613.1| hypothetical protein SpalD1_00225 [Schlesneria paludicola DSM
18645]
Length = 509
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 94/341 (27%), Positives = 166/341 (48%), Gaps = 43/341 (12%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I+D+ ++ LS L NLK L I +++TD+G+ LK ++ + P + ++++ +L
Sbjct: 154 ISDASIEGLSQLKNLKELWIDGTEITDAGVQSLKEALPNAIVG-KDAPDESQAIETIRSL 212
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD--------ECLVHLKGLTNLE 279
G G + + V+ +GF D E L +K +L
Sbjct: 213 GG--------------GVTRDEAVAGRPVIEVGFGGFLDVGPKTTIEEVLSAVKQFRSLR 258
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
+L L S G GL+ + G + +S L NL + + I+D
Sbjct: 259 TLQLGSSGDASHGLL-----------------ATADGWKEISELNNLTRLTIIGIEITDA 301
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L++++ LS L+SL L +IT+ G+ + L LT+L LF ++TD+G LR + L
Sbjct: 302 GLKEISRLSQLESLRLINLKITNQGMKEIGKLKNLTNLGLFDVQLTDAGLNQLRGLQRLD 361
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
+L + ++D G++ + L+SLT L++ + +TD L+ + GL+ L +L ++++RI+
Sbjct: 362 TLSLNNNPISDEGLRQVGALTSLTFLSVP-STEITDNGLKGLRGLSSLKNLCLASTRISD 420
Query: 460 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 500
GL+ L L NL L L +VT + L R+L +L S
Sbjct: 421 DGLKGLIGLNNLEQLDLAGTRVTGTGVGPL--RELESLHSL 459
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 108/371 (29%), Positives = 179/371 (48%), Gaps = 35/371 (9%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L +++L+G+D+TD+ L+D +L LD +ISD +E L L NL L +
Sbjct: 119 ALGTLNLNGTDITDADFSELRDLRHLSLLDLG-GTRISDASIEGLSQLKNLKEL-WIDGT 176
Query: 118 AITAQGMKAF-AGLIN-LVKLD-------LERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
IT G+++ L N +V D +E + GG+ + + + + + +
Sbjct: 177 EITDAGVQSLKEALPNAIVGKDAPDESQAIETIRSLGGGVTRDEAVAGRPVIEVGFGGFL 236
Query: 169 TDSDMKP-------LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
D+ P LS + +SL+ ++ SG A G TA
Sbjct: 237 ---DVGPKTTIEEVLSAVKQFRSLR--TLQLGSSGDAS------------HGLLATADGW 279
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
+S L +L L + +++D G ++ S++ L+ L L +IT++ + + L NL +L
Sbjct: 280 KEISELNNLTRLTIIGIEITDAGLKEISRLSQLESLRLINLKITNQGMKEIGKLKNLTNL 339
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
L + D GL L GL L L L++ + GLR + LT+L +++ T I+D L
Sbjct: 340 GLFDVQLTDAGLNQLRGLQRLDTLSLNNNPISDEGLRQVGALTSLTFLSVPSTEITDNGL 399
Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
+ L GLSSLK+L L + +I+D GL L L L LDL G R+T +G LR ++L SL
Sbjct: 400 KGLRGLSSLKNLCLASTRISDDGLKGLIGLNNLEQLDLAGTRVTGTGVGPLRELESLHSL 459
Query: 402 EICGGGLTDAG 412
+ ++D G
Sbjct: 460 GLSNTQISDEG 470
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 138/294 (46%), Gaps = 28/294 (9%)
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
L S +ALG+L NLN ++D + + L +L+LG I+D + L L NL+
Sbjct: 114 LKSFNALGTL---NLNGTDITDADFSELRDLRHLSLLDLGGTRISDASIEGLSQLKNLKE 170
Query: 281 LNLDSCGIGDEGLVNLT-GLCN-LKCLELSDTQVGSSGLRHL-SGLTNLES------INL 331
L +D I D G+ +L L N + + D +R L G+T E+ I +
Sbjct: 171 LWIDGTEITDAGVQSLKEALPNAIVGKDAPDESQAIETIRSLGGGVTRDEAVAGRPVIEV 230
Query: 332 SFTGISD--------GSLRKLAGLSSLKSLNL----DARQ---ITDTGLAALTSLTGLTH 376
F G D L + SL++L L DA T G ++ L LT
Sbjct: 231 GFGGFLDVGPKTTIEEVLSAVKQFRSLRTLQLGSSGDASHGLLATADGWKEISELNNLTR 290
Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436
L + G ITD+G + L SL + +T+ G+K I L +LT L L + LTD
Sbjct: 291 LTIIGIEITDAGLKEISRLSQLESLRLINLKITNQGMKEIGKLKNLTNLGLF-DVQLTDA 349
Query: 437 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 490
L + GL L +L+++N+ I+ GLR + L +L L++ S ++T N +K L+
Sbjct: 350 GLNQLRGLQRLDTLSLNNNPISDEGLRQVGALTSLTFLSVPSTEITDNGLKGLR 403
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 107/243 (44%), Gaps = 52/243 (21%)
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
L L L+ T + + L L +L ++L T ISD S+ L+ L +LK L +D +IT
Sbjct: 120 LGTLNLNGTDITDADFSELRDLRHLSLLDLGGTRISDASIEGLSQLKNLKELWIDGTEIT 179
Query: 362 DTGLAALTSL------------------------TGLTHLDLFGAR---------ITDSG 388
D G+ +L G+T + R D G
Sbjct: 180 DAGVQSLKEALPNAIVGKDAPDESQAIETIRSLGGGVTRDEAVAGRPVIEVGFGGFLDVG 239
Query: 389 A--------AYLRNFKNLRSLEICGGG-------LTDAGVKHIKDLSSLTLLNLSQNCNL 433
+ ++ F++LR+L++ G T G K I +L++LT L + +
Sbjct: 240 PKTTIEEVLSAVKQFRSLRTLQLGSSGDASHGLLATADGWKEISELNNLTRLTII-GIEI 298
Query: 434 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA---NDIKRLQ 490
TD L+ IS L+ L SL + N +IT+ G++ + LKNL +L L ++T N ++ LQ
Sbjct: 299 TDAGLKEISRLSQLESLRLINLKITNQGMKEIGKLKNLTNLGLFDVQLTDAGLNQLRGLQ 358
Query: 491 SRD 493
D
Sbjct: 359 RLD 361
>gi|87309359|ref|ZP_01091495.1| hypothetical protein DSM3645_22189 [Blastopirellula marina DSM
3645]
gi|87287998|gb|EAQ79896.1| hypothetical protein DSM3645_22189 [Blastopirellula marina DSM
3645]
Length = 351
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/254 (31%), Positives = 123/254 (48%), Gaps = 1/254 (0%)
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
+L L+L ++D+ + + + L+ L++ IT E L L LT LE L I
Sbjct: 75 TLRKLSLQDVGMTDESASELAPLTKLQSLDMRGVSITGEALQSLGQLTELERLLFRGQPI 134
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
D L L L LK L L DT + GL HL +L+ + L T D L L
Sbjct: 135 RDADLAQLAPLTKLKVLGLDDTDASAGGLEHLQNAHDLKELYLFNTPTVDEELAVLTKFP 194
Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
+L L L +T +G+A L + L LD+ ++ D+GAA + L L + +
Sbjct: 195 ALAKLRLRGSDVTGSGMAELAKIGSLEDLDVSETKVDDAGAAEIAKLPKLTDLNLWKTKV 254
Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 468
TDA + + L++L LNL N +LTD L L++ + L L++ ++ +T AG+ L
Sbjct: 255 TDASLPDLAKLTTLERLNLDAN-DLTDANLALLAAMPNLKWLHLGSTSVTDAGILELAKS 313
Query: 469 KNLRSLTLESCKVT 482
K+L +L + KVT
Sbjct: 314 KSLETLIVTRTKVT 327
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 85/274 (31%), Positives = 130/274 (47%), Gaps = 4/274 (1%)
Query: 142 TRIHGGLVNLKGL---MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
+R+ V+ +GL + L L+++ +TD L+ LT L+SL + +T +
Sbjct: 58 SRVVATDVDFRGLGEAVTLRKLSLQDVG-MTDESASELAPLTKLQSLDMRGVSITGEALQ 116
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
L L +L L G P+ A L L+ L L L L+ S G E LK L
Sbjct: 117 SLGQLTELERLLFRGQPIRDADLAQLAPLTKLKVLGLDDTDASAGGLEHLQNAHDLKELY 176
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
L DE L L L L L + G+ L + +L+ L++S+T+V +G
Sbjct: 177 LFNTPTVDEELAVLTKFPALAKLRLRGSDVTGSGMAELAKIGSLEDLDVSETKVDDAGAA 236
Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
++ L L +NL T ++D SL LA L++L+ LNLDA +TD LA L ++ L L
Sbjct: 237 EIAKLPKLTDLNLWKTKVTDASLPDLAKLTTLERLNLDANDLTDANLALLAAMPNLKWLH 296
Query: 379 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
L +TD+G L K+L +L + +TD G
Sbjct: 297 LGSTSVTDAGILELAKSKSLETLIVTRTKVTDDG 330
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 135/300 (45%), Gaps = 11/300 (3%)
Query: 212 EGCPVTAACLDSLSALGSLFY---------LNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
E P+ ++ L LG+ ++L+R +D + +L+ L+L
Sbjct: 25 ETFPLDPPAVERLGRLGAKISRSSSKAPIGMDLSRVVATDVDFRGLGEAVTLRKLSLQDV 84
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
+TDE L LT L+SL++ I E L +L L L+ L + + L L+
Sbjct: 85 GMTDESASELAPLTKLQSLDMRGVSITGEALQSLGQLTELERLLFRGQPIRDADLAQLAP 144
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
LT L+ + L T S G L L LK L L D LA LT L L L G+
Sbjct: 145 LTKLKVLGLDDTDASAGGLEHLQNAHDLKELYLFNTPTVDEELAVLTKFPALAKLRLRGS 204
Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
+T SG A L +L L++ + DAG I L LT LNL + +TD +L ++
Sbjct: 205 DVTGSGMAELAKIGSLEDLDVSETKVDDAGAAEIAKLPKLTDLNLWK-TKVTDASLPDLA 263
Query: 443 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL-QSRDLPNLVSFR 501
LT L LN+ + +T A L L + NL+ L L S VT I L +S+ L L+ R
Sbjct: 264 KLTTLERLNLDANDLTDANLALLAAMPNLKWLHLGSTSVTDAGILELAKSKSLETLIVTR 323
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 102/227 (44%), Gaps = 27/227 (11%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
G + D+ L L + L+ L + S GGLEHL+ +L L + N + +
Sbjct: 131 GQPIRDADLAQLAPLTKLKVLGLDDT-DASAGGLEHLQNAHDLKEL-YLFNTPTVDEELA 188
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
L KL R+ G + +T S M L+ + +L+ L
Sbjct: 189 VLTKFPALAKL------RLRG-------------------SDVTGSGMAELAKIGSLEDL 223
Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
+S +KV D+G A + L KLT LNL VT A L L+ L +L LNL+ L+D
Sbjct: 224 DVSETKVDDAGAAEIAKLPKLTDLNLWKTKVTDASLPDLAKLTTLERLNLDANDLTDANL 283
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
+ + +LK L+LG +TD ++ L +LE+L + + D+G
Sbjct: 284 ALLAAMPNLKWLHLGSTSVTDAGILELAKSKSLETLIVTRTKVTDDG 330
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 82/185 (44%), Gaps = 29/185 (15%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L++L L P V+++ + ++ +L + L GSDVT SG+ L +L+ LD +
Sbjct: 172 LKELYLFNTPTVDEEL--AVLTKFPALAKLRLRGSDVTGSGMAELAKIGSLEDLDVSET- 228
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
++ D G + L LT L+ + A L +L
Sbjct: 229 KVDDAGAAEIAKLPKLTDLNLWKTKVTDA-------------------------SLPDLA 263
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L LE LN+ N +TD+++ L+ + NLK L + + VTD+GI L + L L +
Sbjct: 264 KLTTLERLNLD-ANDLTDANLALLAAMPNLKWLHLGSTSVTDAGILELAKSKSLETLIVT 322
Query: 213 GCPVT 217
VT
Sbjct: 323 RTKVT 327
>gi|325109499|ref|YP_004270567.1| hypothetical protein Plabr_2946 [Planctomyces brasiliensis DSM
5305]
gi|324969767|gb|ADY60545.1| leucine-rich repeat cysteine-containing subtype [Planctomyces
brasiliensis DSM 5305]
Length = 381
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 142/270 (52%), Gaps = 6/270 (2%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
++ ++ L+ L L+SL + S D + + +L L+L CPV+ A L L L
Sbjct: 86 VSPEALEALAKLPKLRSLLLRESNAGDDALIAVGKCSQLENLDLRECPVSNAGLAHLVGL 145
Query: 228 GSLFYLNLN----RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L L L+ + D G E +K+ LKVL L F I+ + L LK LT+L L L
Sbjct: 146 EKLKALRLSGQSGATTVDDGGMESVAKLPQLKVLALDFLWISGDGLQQLKPLTDLRELYL 205
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSL 341
S +GDE L L+ L+ L +S +Q+ G++ +S L+ LE +++S + +S+ +
Sbjct: 206 ASTLVGDEDLKALSQFPELRKLRVSKLSQLSGQGIQEISQLSKLEELDVSEDSSLSNDDI 265
Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
L+ L+ L LNL I+D G+ L LT LT L+L +++D+G + L+ K L+ L
Sbjct: 266 SSLSKLTKLTKLNLWRVPISDAGVEHLAPLTKLTWLNLDNTQLSDAGLSTLKEMKELKFL 325
Query: 402 EICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
+ +++AG+ + +L SL L +++
Sbjct: 326 HLGSTQISNAGLPQLSELKSLDKLVVTRTA 355
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 121/242 (50%), Gaps = 7/242 (2%)
Query: 248 FSKIGSLKVLNLGF--NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
K G +++ + F E++ E L L L L SL L GD+ L+ + L+ L
Sbjct: 68 MRKNGDDQIIEVDFIGKEVSPEALEALAKLPKLRSLLLRESNAGDDALIAVGKCSQLENL 127
Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLS----FTGISDGSLRKLAGLSSLKSLNLDARQIT 361
+L + V ++GL HL GL L+++ LS T + DG + +A L LK L LD I+
Sbjct: 128 DLRECPVSNAGLAHLVGLEKLKALRLSGQSGATTVDDGGMESVAKLPQLKVLALDFLWIS 187
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLS 420
GL L LT L L L + D L F LR L + L+ G++ I LS
Sbjct: 188 GDGLQQLKPLTDLRELYLASTLVGDEDLKALSQFPELRKLRVSKLSQLSGQGIQEISQLS 247
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
L L++S++ +L++ + +S LT L LN+ I+ AG+ HL PL L L L++ +
Sbjct: 248 KLEELDVSEDSSLSNDDISSLSKLTKLTKLNLWRVPISDAGVEHLAPLTKLTWLNLDNTQ 307
Query: 481 VT 482
++
Sbjct: 308 LS 309
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 133/286 (46%), Gaps = 31/286 (10%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ- 122
L S+ D LI + CS L++LD C +S+ GL HL GL L +L + T
Sbjct: 105 LRESNAGDDALIAVGKCSQLENLDLREC-PVSNAGLAHLVGLEKLKALRLSGQSGATTVD 163
Query: 123 --GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
GM++ A L L L L+ GL LK L L L + + D D+K LS
Sbjct: 164 DGGMESVAKLPQLKVLALDFLWISGDGLQQLKPLTDLRELYLA-STLVGDEDLKALSQFP 222
Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNL-EGCPVTAACLDSLSALGSLFYLNLNRC 238
L+ L++S S+++ GI + L KL L++ E ++ + SLS L L LNL R
Sbjct: 223 ELRKLRVSKLSQLSGQGIQEISQLSKLEELDVSEDSSLSNDDISSLSKLTKLTKLNLWRV 282
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+SD G E HL LT L LNLD+ + D GL L
Sbjct: 283 PISDAGVE------------------------HLAPLTKLTWLNLDNTQLSDAGLSTLKE 318
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
+ LK L L TQ+ ++GL LS L +L+ + ++ T ++ + KL
Sbjct: 319 MKELKFLHLGSTQISNAGLPQLSELKSLDKLVVTRTAVNQEGVDKL 364
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 142/290 (48%), Gaps = 8/290 (2%)
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
G V+ L++L+ L L L L DD K L+ L+L +++ L HL
Sbjct: 83 GKEVSPEALEALAKLPKLRSLLLRESNAGDDALIAVGKCSQLENLDLRECPVSNAGLAHL 142
Query: 273 KGLTNLESLNLD----SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
GL L++L L + + D G+ ++ L LK L L + GL+ L LT+L
Sbjct: 143 VGLEKLKALRLSGQSGATTVDDGGMESVAKLPQLKVLALDFLWISGDGLQQLKPLTDLRE 202
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLF-GARITD 386
+ L+ T + D L+ L+ L+ L + Q++ G+ ++ L+ L LD+ + +++
Sbjct: 203 LYLASTLVGDEDLKALSQFPELRKLRVSKLSQLSGQGIQEISQLSKLEELDVSEDSSLSN 262
Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 446
+ L L L + ++DAGV+H+ L+ LT LNL N L+D L + +
Sbjct: 263 DDISSLSKLTKLTKLNLWRVPISDAGVEHLAPLTKLTWLNLD-NTQLSDAGLSTLKEMKE 321
Query: 447 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 496
L L++ +++I++AGL L LK+L L + V + +LQ +LP+
Sbjct: 322 LKFLHLGSTQISNAGLPQLSELKSLDKLVVTRTAVNQEGVDKLQP-ELPD 370
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 126/260 (48%), Gaps = 12/260 (4%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF---NFCIQISDGGLEHLRGLSNLTSLSF 113
S L ++DL V+++GL HL L++L + + DGG+E + L L L+
Sbjct: 122 SQLENLDLRECPVSNAGLAHLVGLEKLKALRLSGQSGATTVDDGGMESVAKLPQLKVLAL 181
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
I+ G++ L +L +L L L L +L L + + ++ +
Sbjct: 182 DF-LWISGDGLQQLKPLTDLRELYLASTLVGDEDLKALSQFPELRKLRVSKLSQLSGQGI 240
Query: 174 KPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ +S L+ L+ L +S S +++ I+ L L KLT LNL P++ A ++ L+ L L +
Sbjct: 241 QEISQLSKLEELDVSEDSSLSNDDISSLSKLTKLTKLNLWRVPISDAGVEHLAPLTKLTW 300
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
LNL+ QLSD G ++ LK L+LG +I++ L L L +L+ L + + EG
Sbjct: 301 LNLDNTQLSDAGLSTLKEMKELKFLHLGSTQISNAGLPQLSELKSLDKLVVTRTAVNQEG 360
Query: 293 LVNLTGLCNLKCLELSDTQV 312
+ L EL DT++
Sbjct: 361 VDKLQP-------ELPDTEI 373
>gi|449464060|ref|XP_004149747.1| PREDICTED: uncharacterized protein LOC101203036 [Cucumis sativus]
gi|449505065|ref|XP_004162366.1| PREDICTED: uncharacterized protein LOC101225004 [Cucumis sativus]
Length = 586
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 109/442 (24%), Positives = 191/442 (43%), Gaps = 65/442 (14%)
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMK 174
NA+ ++ M L L++ C R+ G+ + G+ L LN+ C +TD+ ++
Sbjct: 71 ENAVDSEWMAYLGSFRYLQSLNVSNCHRLSSSGVWTISGMTTLRELNVSRCLKVTDAGIR 130
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L + L+ L I+ + +T G+ L L+ L L+L G PVT L SL L L YL+
Sbjct: 131 HLLSIPTLEKLCIAETGITAHGVTLLSSLKTLVFLDLGGLPVTDQALSSLQVLTKLQYLD 190
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-------G 287
L ++S+ G + L LN+ + +T L +LE LN+ +C G
Sbjct: 191 LWGSKISNSGSDVLQMFPKLSFLNIAWTSVTK-----FPNLPHLECLNMSNCIIDSTLKG 245
Query: 288 IG--------------------DEGLVNLTGLCNL-------------------KCLELS 308
+G D G V + L L + L+LS
Sbjct: 246 LGAKVPPRKLIASGATFSNETEDLGFVAMDALYYLDFSNASLHRFCFLSRMKAVEHLDLS 305
Query: 309 DTQVGSSGLRHLSGL-TNLESINLSFTGISDGSLRKLAG-LSSLKSLNLDARQITDTGLA 366
T +G S + ++ + NL+ +NLS T +S + LAG +S+L++L+L + D L+
Sbjct: 306 STTIGDSSVELIASVGENLKYLNLSCTAVSSSGIGSLAGKVSNLETLSLSHTMVDDVALS 365
Query: 367 ALTSLTGLTHLDL----FGARITDSGAAYLRNF-----KNLRSLEICGGGLTDAGVKHIK 417
+ + L +DL I S ++ F +NL LE+ T + ++
Sbjct: 366 YMNMMPSLKCIDLSETDIKGYIHLSAPETVKVFSLTELQNLDCLEMLNLEHTHVDDESLR 425
Query: 418 DLSSLTLLN--LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
LS L+ + ++ + TD L +S L L +L++ ++ +T+ KP+ L+ +
Sbjct: 426 PLSRFRKLSHLMLRSPSFTDTVLSYLSILPNLKTLSIRDAVLTNQAFDTFKPVATLQKID 485
Query: 476 LESCKVTANDIKRLQSRDLPNL 497
L C + D + R P +
Sbjct: 486 LRGCWLLTEDGLSVFHRRFPQI 507
>gi|296123881|ref|YP_003631659.1| serine/threonine protein kinase-related protein [Planctomyces
limnophilus DSM 3776]
gi|296016221|gb|ADG69460.1| Serine/threonine protein kinase-related protein [Planctomyces
limnophilus DSM 3776]
Length = 1655
Score = 105 bits (263), Expect = 4e-20, Method: Composition-based stats.
Identities = 132/506 (26%), Positives = 199/506 (39%), Gaps = 86/506 (16%)
Query: 61 SVDLSGSDVTDSGLIHLKD------CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
SV L+G + + + KD C +L+ + F ISD L+ L L LT L
Sbjct: 1143 SVQLTGIEFRNKRDLDAKDFEVFSGCRDLEKVRLGFS-SISDAHLKPLENLPKLTHLELS 1201
Query: 115 RNNAITAQGMKAFAGLINLV--------------------KLDLERCTRIHG-GLVNLKG 153
+ +T ++ F L +L LDL TRI G L
Sbjct: 1202 QCEKVTGAAIRKFKHLTHLEAWAVPVGDDDLAPLKDNPFRNLDLGG-TRITGKALAAFTN 1260
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L L S + + + I + D+ L L L + + + D G+ + L+ L L L+G
Sbjct: 1261 LSDLRSSRLAFTS-IKNKDLAALKDCHRLTFLALYNTGIGDEGVREICELKALRSLELQG 1319
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK----------IGSLKVLNLGFNE 263
VT L L L ++L Q++ + E F K G L +E
Sbjct: 1320 SKVTNEVFFYLMKLPHLLSVDLRYTQVTPEAIESFRKQKPLCEVKCDAGVLPRWEPNGDE 1379
Query: 264 ITDEC--------LVHLKG----LTNLESLNLDSCGIGDEGLVNLTGLC--NLKCLELSD 309
+ V +G L N + I L LTG+ LK L D
Sbjct: 1380 LVKNAKADRAAAAFVLKQGKYVWLDNAKDPLHGDPAILPPHLFKLTGISLEGLKTLTPRD 1439
Query: 310 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 369
++ G NL + L GI+D LR G +S+ L LD + +T GL+ +
Sbjct: 1440 FEI-------FKGCQNLSDLQLLNMGITDEHLRAFEGTTSITKLKLDGQAVTSKGLSYFS 1492
Query: 370 SLTGLT-----------------------HLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
LT +L+L G RITD+ A + +NL +
Sbjct: 1493 GCKRLTFLSVWATQADDKFIQSIASPDYTYLNLGGTRITDASIAAFESLQNLEMATLNFT 1552
Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL- 465
GLTD G++H+ +LT L L+ LTD + ++ L L L +SN++ + GL L
Sbjct: 1553 GLTDEGIEHLASAENLTYLGLNHT-RLTDASAKVFLKLNQLEELTLSNTQFSDQGLLLLV 1611
Query: 466 KPLKNLRSLTLESCKVTANDIKRLQS 491
L NL+ L L KVTA+ + + QS
Sbjct: 1612 NALPNLKRLNLLETKVTADSVDKFQS 1637
Score = 87.0 bits (214), Expect = 2e-14, Method: Composition-based stats.
Identities = 95/364 (26%), Positives = 150/364 (41%), Gaps = 21/364 (5%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
L A +DC G+ D+ + I + +L S++L GS VT+ +L +L
Sbjct: 1279 LAALKDCHRLTFLALYNTGIGDEGVREIC-ELKALRSLELQGSKVTNEVFFYLMKLPHLL 1337
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSL---------------SFRRNNAITAQGMKAFAG 129
S+D + Q++ +E R L + +N
Sbjct: 1338 SVDLRY-TQVTPEAIESFRKQKPLCEVKCDAGVLPRWEPNGDELVKNAKADRAAAAFVLK 1396
Query: 130 LINLVKLDLERCTRIHGGLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
V LD + +HG L L KL ++++ +T D + G NL LQ+
Sbjct: 1397 QGKYVWLDNAK-DPLHGDPAILPPHLFKLTGISLEGLKTLTPRDFEIFKGCQNLSDLQLL 1455
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+TD + +G +T L L+G VT+ L S L +L++ Q D +
Sbjct: 1456 NMGITDEHLRAFEGTTSITKLKLDGQAVTSKGLSYFSGCKRLTFLSVWATQADDKFIQSI 1515
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
+ LNLG ITD + + L NLE L+ G+ DEG+ +L NL L L+
Sbjct: 1516 AS-PDYTYLNLGGTRITDASIAAFESLQNLEMATLNFTGLTDEGIEHLASAENLTYLGLN 1574
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNLDARQITDTGLAA 367
T++ + + L LE + LS T SD G L + L +LK LNL ++T +
Sbjct: 1575 HTRLTDASAKVFLKLNQLEELTLSNTQFSDQGLLLLVNALPNLKRLNLLETKVTADSVDK 1634
Query: 368 LTSL 371
SL
Sbjct: 1635 FQSL 1638
Score = 65.9 bits (159), Expect = 5e-08, Method: Composition-based stats.
Identities = 64/208 (30%), Positives = 96/208 (46%), Gaps = 15/208 (7%)
Query: 294 VNLTGL--CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
V LTG+ N + L+ D +V SG +LE + L F+ ISD L+ L L L
Sbjct: 1144 VQLTGIEFRNKRDLDAKDFEV-------FSGCRDLEKVRLGFSSISDAHLKPLENLPKLT 1196
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
L L Q AA+ LTHL+ + + D A L++ R+L++ G +T
Sbjct: 1197 HLELS--QCEKVTGAAIRKFKHLTHLEAWAVPVGDDDLAPLKD-NPFRNLDLGGTRITGK 1253
Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 471
+ +LS L L+ ++ +K L + L L + N+ I G+R + LK L
Sbjct: 1254 ALAAFTNLSDLRSSRLAFT-SIKNKDLAALKDCHRLTFLALYNTGIGDEGVREICELKAL 1312
Query: 472 RSLTLESCKVTANDIKRLQSRDLPNLVS 499
RSL L+ KVT L LP+L+S
Sbjct: 1313 RSLELQGSKVTNEVFFYLMK--LPHLLS 1338
>gi|344170515|emb|CCA82933.1| leucine-rich-repeat type III effector protein (GALA5) [blood
disease bacterium R229]
Length = 533
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 110/374 (29%), Positives = 172/374 (45%), Gaps = 11/374 (2%)
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC----ITDSDMKPLSGLTNLKSLQIS 188
L +LDL RC G + G+ L L + N I + L+ L SL +S
Sbjct: 141 LTELDLSRCR----GPITAAGIAHLSHLPLVRLNVRDQRIGVEGARLLANHPTLTSLDVS 196
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
++ G L G +LT L++ + A +L+A +L L+++ + D+G
Sbjct: 197 NGRIGPEGARALAGNTRLTTLSVSHNRIGAEGAKALAASETLTSLDISENGIGDEGACAL 256
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
+ L LN+ N I E L L SL++ IGDEG+ L L L +
Sbjct: 257 ATNTKLTALNVNRNRIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVE 316
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
T+VG+ G+ L+ L S+ + I D R LA +SL +L++++ I+ G AL
Sbjct: 317 RTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESNGISPAGAQAL 376
Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
+ T LT L+L I D+GA L SL + GL+DAG + +LT L+
Sbjct: 377 AANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRNGLSDAGATTLAASKTLTTLDAG 436
Query: 429 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
N + D ++ L +L+V ++ I +AG R L L SL L + +VT ++
Sbjct: 437 DNT-IRDAGARALAANRTLTTLDVRSNEIENAGARALAANTGLASLDLRNNRVTEAGVRA 495
Query: 489 -LQSRDLPNL-VSF 500
L +R L +L VSF
Sbjct: 496 LLANRTLSSLGVSF 509
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 114/388 (29%), Positives = 176/388 (45%), Gaps = 14/388 (3%)
Query: 57 SSLLSVDLSG--SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSN---LTSL 111
+SL +DLS +T +G+ HL S+L + N Q G+E R L+N LTSL
Sbjct: 139 ASLTELDLSRCRGPITAAGIAHL---SHLPLVRLNVRDQRI--GVEGARLLANHPTLTSL 193
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
N I +G +A AG L L + G L L SL+I N I D
Sbjct: 194 DVS-NGRIGPEGARALAGNTRLTTLSVSHNRIGAEGAKALAASETLTSLDIS-ENGIGDE 251
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
L+ T L +L ++ +++ G L + LT L++ G + + +L+A L
Sbjct: 252 GACALATNTKLTALNVNRNRIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLT 311
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
LN+ R ++ DG + +L L + N I D L T+L +L+++S GI
Sbjct: 312 TLNVERTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESNGISPA 371
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
G L L L L +G +G + S T L S+++ G+SD LA +L
Sbjct: 372 GAQALAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRNGLSDAGATTLAASKTLT 431
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
+L+ I D G AL + LT LD+ I ++GA L L SL++ +T+A
Sbjct: 432 TLDAGDNTIRDAGARALAANRTLTTLDVRSNEIENAGARALAANTGLASLDLRNNRVTEA 491
Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
GV+ + L++ TL +L + N K E
Sbjct: 492 GVRAL--LANRTLSSLGVSFNYCSKPTE 517
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 102/368 (27%), Positives = 171/368 (46%), Gaps = 13/368 (3%)
Query: 114 RRNNAITAQGMKAFA-GLINLVKLDLER-CTRIHGGLVNLK---GLMKLESLNIKWCNCI 168
RR+ + Q ++A + L V+ D+ + R GL +K LE L +
Sbjct: 72 RRSKPLAVQRLRAVSKPLKAAVEADMRQLVIRDRAGLAGVKRAGNYPALEKLTL--IGPF 129
Query: 169 TDSDMKPLSGLTNLKSLQIS-C-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
TD+D++ L +L L +S C +T +GIA+L L L LN+ + L+
Sbjct: 130 TDNDLRGLPA--SLTELDLSRCRGPITAAGIAHLSHL-PLVRLNVRDQRIGVEGARLLAN 186
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
+L L+++ ++ +G + L L++ N I E L L SL++
Sbjct: 187 HPTLTSLDVSNGRIGPEGARALAGNTRLTTLSVSHNRIGAEGAKALAASETLTSLDISEN 246
Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
GIGDEG L L L ++ ++G G + L+ L S+++ I D +R LA
Sbjct: 247 GIGDEGACALATNTKLTALNVNRNRIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAA 306
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
+ L +LN++ ++ G+ AL + LT L + I D+GA L +L +L I
Sbjct: 307 NARLTTLNVERTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESN 366
Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 466
G++ AG + + ++LT LNL N + D + S T L+SL+V + ++ AG L
Sbjct: 367 GISPAGAQALAANTTLTTLNLGYN-GIGDAGAQAWSANTTLISLSVRRNGLSDAGATTLA 425
Query: 467 PLKNLRSL 474
K L +L
Sbjct: 426 ASKTLTTL 433
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 103/230 (44%), Gaps = 3/230 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
+ G +L S+D+ G+D+ D G+ L + L +L+ ++ G+ L LTSL
Sbjct: 281 AAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVERT-RVGADGVGALAASKTLTSLRI 339
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN I G +A A +L L +E G L L +LN+ + N I D+
Sbjct: 340 DSNN-IGDAGARALATNTSLTTLHIESNGISPAGAQALAANTTLTTLNLGY-NGIGDAGA 397
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+ S T L SL + + ++D+G L + LT L+ + A +L+A +L L
Sbjct: 398 QAWSANTTLISLSVRRNGLSDAGATTLAASKTLTTLDAGDNTIRDAGARALAANRTLTTL 457
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
++ ++ + G + L L+L N +T+ + L L SL +
Sbjct: 458 DVRSNEIENAGARALAANTGLASLDLRNNRVTEAGVRALLANRTLSSLGV 507
>gi|290983896|ref|XP_002674664.1| predicted protein [Naegleria gruberi]
gi|284088255|gb|EFC41920.1| predicted protein [Naegleria gruberi]
Length = 374
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 88/338 (26%), Positives = 162/338 (47%), Gaps = 7/338 (2%)
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
+W N T + + + LT+L+ +I+ +++ YL L +L L++ +T + ++
Sbjct: 19 RWGNSETYNKLIMMKSLTDLRISKINFVEMS----KYLISLDQLISLDISKSLITDSIVE 74
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
+S L L YLN++ + + G SK+ L L + N CL ++ + L SLN
Sbjct: 75 PISKLKQLTYLNVSDNSIGNYGVMHISKLEQLTNLVISKNRFGMNCLKYITNMRKLTSLN 134
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
++ IG+ ++ + L L +++ +G G H+ L +L S+ ++ GI + ++
Sbjct: 135 INGNDIGNIAFEDIIKMKQLTSLNVNNINIGDKGAFHVGKLKHLTSLAIAKNGIHEEGVK 194
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
+ L + L++ G + + LT L++ RI D GA YL L L
Sbjct: 195 FINELPQVTDLDIFGISFGPGGAKYIGEMKQLTKLNINSCRIGDEGATYLSGLTKLTKLS 254
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
I ++ GVK I++L LT L++S N N+ + + +SGL L L++ + + G
Sbjct: 255 ISSNSISAIGVKFIRELKLLTFLDISIN-NIGQQGSQYVSGLDKLAHLSIHRNNLGDEGA 313
Query: 463 RHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 500
RH+ +K L +L + ++ D L DL L SF
Sbjct: 314 RHIGDMKWLTNLDINCNSIS--DEGALYFSDLKQLTSF 349
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 140/291 (48%), Gaps = 3/291 (1%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
ITDS ++P+S L L L +S + + + G+ ++ L++LT L + CL ++ +
Sbjct: 68 ITDSIVEPISKLKQLTYLNVSDNSIGNYGVMHISKLEQLTNLVISKNRFGMNCLKYITNM 127
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
L LN+N + + E K+ L LN+ I D+ H+ L +L SL + G
Sbjct: 128 RKLTSLNINGNDIGNIAFEDIIKMKQLTSLNVNNINIGDKGAFHVGKLKHLTSLAIAKNG 187
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
I +EG+ + L + L++ G G +++ + L +N++ I D L+GL
Sbjct: 188 IHEEGVKFINELPQVTDLDIFGISFGPGGAKYIGEMKQLTKLNINSCRIGDEGATYLSGL 247
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
+ L L++ + I+ G+ + L LT LD+ I G+ Y+ L L I
Sbjct: 248 TKLTKLSISSNSISAIGVKFIRELKLLTFLDISINNIGQQGSQYVSGLDKLAHLSIHRNN 307
Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCN-LTDKTLELISGLTGLVSLNVSNSRI 457
L D G +HI D+ LT NL NCN ++D+ S L L S ++S + I
Sbjct: 308 LGDEGARHIGDMKWLT--NLDINCNSISDEGALYFSDLKQLTSFDISGNNI 356
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 82/330 (24%), Positives = 144/330 (43%), Gaps = 27/330 (8%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
+ +LT L + N + K L L+ LD+ + + + L +L LN+
Sbjct: 32 MKSLTDLRISKINFVEMS--KYLISLDQLISLDISKSLITDSIVEPISKLKQLTYLNVS- 88
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N I + + +S L L +L IS ++ + + Y+ ++KLT LN+ G + + +
Sbjct: 89 DNSIGNYGVMHISKLEQLTNLVISKNRFGMNCLKYITNMRKLTSLNINGNDIGNIAFEDI 148
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV-------------- 270
+ L LN+N + D G K+ L L + N I +E +
Sbjct: 149 IKMKQLTSLNVNNINIGDKGAFHVGKLKHLTSLAIAKNGIHEEGVKFINELPQVTDLDIF 208
Query: 271 ----------HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
++ + L LN++SC IGDEG L+GL L L +S + + G++ +
Sbjct: 209 GISFGPGGAKYIGEMKQLTKLNINSCRIGDEGATYLSGLTKLTKLSISSNSISAIGVKFI 268
Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
L L +++S I + ++GL L L++ + D G + + LT+LD+
Sbjct: 269 RELKLLTFLDISINNIGQQGSQYVSGLDKLAHLSIHRNNLGDEGARHIGDMKWLTNLDIN 328
Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTD 410
I+D GA Y + K L S +I G + D
Sbjct: 329 CNSISDEGALYFSDLKQLTSFDISGNNICD 358
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 85/342 (24%), Positives = 151/342 (44%), Gaps = 43/342 (12%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDG-----GLEHLRGLSNLTSLSF 113
L+S+D+S S +TDS ++ S L+ L + + +SD G+ H+ L LT+L
Sbjct: 58 LISLDISKSLITDS---IVEPISKLKQLTY---LNVSDNSIGNYGVMHISKLEQLTNLVI 111
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE---SLNIKWCNCITD 170
+N GM + N+ KL G + + ++K++ SLN+ N I D
Sbjct: 112 SKNRF----GMNCLKYITNMRKLTSLNINGNDIGNIAFEDIIKMKQLTSLNVNNIN-IGD 166
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ L +L SL I+ + + + G+ ++ L ++T L++ G + + L
Sbjct: 167 KGAFHVGKLKHLTSLAIAKNGIHEEGVKFINELPQVTDLDIFGISFGPGGAKYIGEMKQL 226
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
LN+N C++ D+G +L GLT L L++ S I
Sbjct: 227 TKLNINSCRIGDEGA------------------------TYLSGLTKLTKLSISSNSISA 262
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
G+ + L L L++S +G G +++SGL L +++ + D R + + L
Sbjct: 263 IGVKFIRELKLLTFLDISINNIGQQGSQYVSGLDKLAHLSIHRNNLGDEGARHIGDMKWL 322
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
+L+++ I+D G + L LT D+ G I D A L
Sbjct: 323 TNLDINCNSISDEGALYFSDLKQLTSFDISGNNICDEVANRL 364
>gi|168701212|ref|ZP_02733489.1| hypothetical protein GobsU_16936 [Gemmata obscuriglobus UQM 2246]
Length = 410
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 123/268 (45%), Gaps = 35/268 (13%)
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-- 314
L+L +++TD+ L L G NL L L+ I D GL +L L L L L T G+
Sbjct: 107 LSLAHHDVTDQKLAELAGQPNLVVLRLNGASITDAGLKHLAALDGLSALSLHGTSRGATS 166
Query: 315 ---------SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
+GL L + L ++L ++D R LA + L+ L L+ +ITD L
Sbjct: 167 AGSYRGITDAGLNELRAIKGLTDLSLGGIEVTDAGARTLATMPQLRVLGLEGTKITDAAL 226
Query: 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
L LT LT +DL ++TD+G +L FK L + + +TDAGV+ + L LT L
Sbjct: 227 ENLAPLTELTEIDLTFTKVTDAGLKHLARFKKLTRVRLSSTAVTDAGVRELAALPELTDL 286
Query: 426 NLS------------------------QNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
+LS + + D+ + ++ GL LN+ +R+ G
Sbjct: 287 DLSYTKAGDGGVTALAAAPNRLTSVSLEKTRVGDEGAKALAAAPGLTRLNLGYTRVGDDG 346
Query: 462 LRHLKPLKNLRSLTLESCKVTANDIKRL 489
+ L NL LTL + +VT + ++ L
Sbjct: 347 VSALAAAPNLTGLTLVATRVTDDGVRSL 374
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 90/306 (29%), Positives = 138/306 (45%), Gaps = 15/306 (4%)
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L ++ VTD +A L G L +L L G +T A L L+AL L L+L+
Sbjct: 107 LSLAHHDVTDQKLAELAGQPNLVVLRLNGASITDAGLKHLAALDGLSALSLHGTS----- 161
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
+ GS + ITD L L+ + L L+L + D G L + L+
Sbjct: 162 -RGATSAGS-------YRGITDAGLNELRAIKGLTDLSLGGIEVTDAGARTLATMPQLRV 213
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
L L T++ + L +L+ LT L I+L+FT ++D L+ LA L + L + +TD G
Sbjct: 214 LGLEGTKITDAALENLAPLTELTEIDLTFTKVTDAGLKHLARFKKLTRVRLSSTAVTDAG 273
Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKN-LRSLEICGGGLTDAGVKHIKDLSSLT 423
+ L +L LT LDL + D G L N L S+ + + D G K + LT
Sbjct: 274 VRELAALPELTDLDLSYTKAGDGGVTALAAAPNRLTSVSLEKTRVGDEGAKALAAAPGLT 333
Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 483
LNL + D + ++ L L + +R+T G+R L + L + L +VT
Sbjct: 334 RLNLGYT-RVGDDGVSALAAAPNLTGLTLVATRVTDDGVRSLFACRKLAYVELRETEVTD 392
Query: 484 NDIKRL 489
I+ L
Sbjct: 393 GAIREL 398
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 141/312 (45%), Gaps = 38/312 (12%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ---------- 93
V D+ + +A Q +L+ + L+G+ +TD+GL HL L +L + +
Sbjct: 114 VTDQKLAELAGQ-PNLVVLRLNGASITDAGLKHLAALDGLSALSLHGTSRGATSAGSYRG 172
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I+D GL LR + LT LS +T G + A + L L LE
Sbjct: 173 ITDAGLNELRAIKGLTDLSL-GGIEVTDAGARTLATMPQLRVLGLE-------------- 217
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
ITD+ ++ L+ LT L + ++ +KVTD+G+ +L +KLT + L
Sbjct: 218 -----------GTKITDAALENLAPLTELTEIDLTFTKVTDAGLKHLARFKKLTRVRLSS 266
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS-LKVLNLGFNEITDECLVHL 272
VT A + L+AL L L+L+ + D G + + L ++L + DE L
Sbjct: 267 TAVTDAGVRELAALPELTDLDLSYTKAGDGGVTALAAAPNRLTSVSLEKTRVGDEGAKAL 326
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
L LNL +GD+G+ L NL L L T+V G+R L L + L
Sbjct: 327 AAAPGLTRLNLGYTRVGDDGVSALAAAPNLTGLTLVATRVTDDGVRSLFACRKLAYVELR 386
Query: 333 FTGISDGSLRKL 344
T ++DG++R+L
Sbjct: 387 ETEVTDGAIREL 398
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 140/310 (45%), Gaps = 18/310 (5%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+TD + L+G NL L+++ + +TD+G+ +L L L+ L+L G A S +
Sbjct: 114 VTDQKLAELAGQPNLVVLRLNGASITDAGLKHLAALDGLSALSLHGTSRGATSAGSYRGI 173
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
+D G + I L L+LG E+TD L + L L L+
Sbjct: 174 -------------TDAGLNELRAIKGLTDLSLGGIEVTDAGARTLATMPQLRVLGLEGTK 220
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
I D L NL L L ++L+ T+V +GL+HL+ L + LS T ++D +R+LA L
Sbjct: 221 ITDAALENLAPLTELTEIDLTFTKVTDAGLKHLARFKKLTRVRLSSTAVTDAGVRELAAL 280
Query: 348 SSLKSLNLDARQITDTGLAALTSLTG-LTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
L L+L + D G+ AL + LT + L R+ D GA L L L +
Sbjct: 281 PELTDLDLSYTKAGDGGVTALAAAPNRLTSVSLEKTRVGDEGAKALAAAPGLTRLNLGYT 340
Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL- 465
+ D GV + +LT L L +TD + + L + + + +T +R L
Sbjct: 341 RVGDDGVSALAAAPNLTGLTLVAT-RVTDDGVRSLFACRKLAYVELRETEVTDGAIRELL 399
Query: 466 --KPLKNLRS 473
+P LRS
Sbjct: 400 KARPGCRLRS 409
>gi|406834160|ref|ZP_11093754.1| ribonuclease inhibitor [Schlesneria paludicola DSM 18645]
Length = 390
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 147/311 (47%), Gaps = 30/311 (9%)
Query: 36 LCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQIS 95
+ L Q P +D + Q L+ + L + +TD+GL +L LQ LD + +IS
Sbjct: 95 ITLDQSPIGDDDL--AVLKQTPQLVGLSLRATKITDAGLKYLSSVPRLQKLDLSRT-KIS 151
Query: 96 DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
D GLEHL+ L+NL +L + + G L GL
Sbjct: 152 DAGLEHLQ-------------------------TLVNLCELTIAETSVTDAGTAKLAGLK 186
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L LN+ N +TD+ +K +S + NL +L + +TD G+A LK Q LT L+L+G P
Sbjct: 187 NLRVLNVSKTN-VTDTSLKVISEIPNLNTLILDGCNLTDVGLASLKDCQSLTFLSLDGIP 245
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+T + L L + L YL L + + + +LK+L+L + D + + +
Sbjct: 246 LTGSFLKELKGI-PLEYLTLANSKCDGTTFKDVGTLKNLKMLSLENCPVEDASIASIAAI 304
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
+LE+L+LD+ I ++ +V L + +L L ++ T + + LR L NL+ + T
Sbjct: 305 ASLETLSLDNTKITEQAIVELKDMPSLVSLSINSTPISAEELRQLKATPNLKLVKAHNTK 364
Query: 336 ISDGSLRKLAG 346
++ G + LA
Sbjct: 365 VTRGDVDALAA 375
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 144/267 (53%), Gaps = 8/267 (2%)
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
+ L++ + DD + L L+L +ITD L +L + L+ L+L I D G
Sbjct: 95 ITLDQSPIGDDDLAVLKQTPQLVGLSLRATKITDAGLKYLSSVPRLQKLDLSRTKISDAG 154
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
L +L L NL L +++T V +G L+GL NL +N+S T ++D SL+ ++ + +L +
Sbjct: 155 LEHLQTLVNLCELTIAETSVTDAGTAKLAGLKNLRVLNVSKTNVTDTSLKVISEIPNLNT 214
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN--LRSLEICGGGLTD 410
L LD +TD GLA+L LT L L G +T S +L+ K L L +
Sbjct: 215 LILDGCNLTDVGLASLKDCQSLTFLSLDGIPLTGS---FLKELKGIPLEYLTLANSKCDG 271
Query: 411 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 470
K + L +L +L+L +NC + D ++ I+ + L +L++ N++IT + LK + +
Sbjct: 272 TTFKDVGTLKNLKMLSL-ENCPVEDASIASIAAIASLETLSLDNTKITEQAIVELKDMPS 330
Query: 471 LRSLTLESCKVTANDIKRLQSRDLPNL 497
L SL++ S ++A ++++L++ PNL
Sbjct: 331 LVSLSINSTPISAEELRQLKAT--PNL 355
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 86/348 (24%), Positives = 166/348 (47%), Gaps = 25/348 (7%)
Query: 87 DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG 146
D++ I++ D + SL R + A+ A + L ++V D + + +G
Sbjct: 44 DYSPVIEVKD----------RVNSLGGRAHMAVAAPAV-----LQSIVGKDWDGWDQFYG 88
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
G ++++ + + + I D D+ L L L + +K+TD+G+ YL + +L
Sbjct: 89 G-------VEVDQITLDQ-SPIGDDDLAVLKQTPQLVGLSLRATKITDAGLKYLSSVPRL 140
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
L+L ++ A L+ L L +L L + ++D G K + + +L+VLN+ +TD
Sbjct: 141 QKLDLSRTKISDAGLEHLQTLVNLCELTIAETSVTDAGTAKLAGLKNLRVLNVSKTNVTD 200
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
L + + NL +L LD C + D GL +L +L L L + S L+ L G+ L
Sbjct: 201 TSLKVISEIPNLNTLILDGCNLTDVGLASLKDCQSLTFLSLDGIPLTGSFLKELKGIP-L 259
Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
E + L+ + + + + L +LK L+L+ + D +A++ ++ L L L +IT+
Sbjct: 260 EYLTLANSKCDGTTFKDVGTLKNLKMLSLENCPVEDASIASIAAIASLETLSLDNTKITE 319
Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
L++ +L SL I ++ ++ +K +L L+ + N +T
Sbjct: 320 QAIVELKDMPSLVSLSINSTPISAEELRQLKATPNLKLVK-AHNTKVT 366
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 145/315 (46%), Gaps = 26/315 (8%)
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
G + + + S + D +A LK +L L+L +T A L LS++ L L+L+R
Sbjct: 88 GGVEVDQITLDQSPIGDDDLAVLKQTPQLVGLSLRATKITDAGLKYLSSVPRLQKLDLSR 147
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
++SD G E + +L L + +TD L GL NL LN
Sbjct: 148 TKISDAGLEHLQTLVNLCELTIAETSVTDAGTAKLAGLKNLRVLN--------------- 192
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
+S T V + L+ +S + NL ++ L ++D L L SL L+LD
Sbjct: 193 ---------VSKTNVTDTSLKVISEIPNLNTLILDGCNLTDVGLASLKDCQSLTFLSLDG 243
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
+T + L L + L +L L ++ + + KNL+ L + + DA + I
Sbjct: 244 IPLTGSFLKELKGIP-LEYLTLANSKCDGTTFKDVGTLKNLKMLSLENCPVEDASIASIA 302
Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 477
++SL L+L N +T++ + + + LVSL+++++ I++ LR LK NL+ +
Sbjct: 303 AIASLETLSL-DNTKITEQAIVELKDMPSLVSLSINSTPISAEELRQLKATPNLKLVKAH 361
Query: 478 SCKVTANDIKRLQSR 492
+ KVT D+ L +
Sbjct: 362 NTKVTRGDVDALAAE 376
>gi|290974964|ref|XP_002670214.1| predicted protein [Naegleria gruberi]
gi|284083770|gb|EFC37470.1| predicted protein [Naegleria gruberi]
Length = 383
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 145/278 (52%), Gaps = 1/278 (0%)
Query: 160 LNIKWCNCITDS-DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+N+K+ + DS +K ++ + LKSL IS +++ D G ++ +++LT L++ +
Sbjct: 106 VNLKFSRRLLDSIQVKFITEMKQLKSLDISENRIGDEGAKFISEMKQLTSLDIGYNRIGV 165
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
+ ++ + L L+++ + D+G + S++ L L+ N I D+ + + +L
Sbjct: 166 VGVKFINEMKHLTSLDISGNGIGDEGVKSISELKQLTSLDFNNNRIGDKGAKSISEMKHL 225
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
L++++ IG EG ++ + LK L + + Q+G G + ++ + L S+++S I
Sbjct: 226 TLLSINNNHIGAEGARFISEMKQLKSLSIYNNQIGDEGAKFINEMKQLTSLDISGNEIGV 285
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
+ ++ + L SL + QI D G ++ + L L+++ +I GA ++ K L
Sbjct: 286 EGVIPISEMKQLTSLEIGGNQIGDEGAKLISEMKQLISLNIYNNQIGIEGAKFISEMKQL 345
Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436
+SL I G + D GVK I ++ LT L++ N + DK
Sbjct: 346 KSLYIGGNQIGDEGVKFISEMKQLTSLDIGYNEIVKDK 383
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 136/278 (48%), Gaps = 33/278 (11%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
++ + L L+++ ++ D+G + S++ L L++G+N I + + + +L SL++
Sbjct: 123 ITEMKQLKSLDISENRIGDEGAKFISEMKQLTSLDIGYNRIGVVGVKFINEMKHLTSLDI 182
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
GIGDEG+ +++ L L L+ ++ ++G G + +S + +L ++++ I R
Sbjct: 183 SGNGIGDEGVKSISELKQLTSLDFNNNRIGDKGAKSISEMKHLTLLSINNNHIGAEGARF 242
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
++ + LKSL++ QI D G + + LT LD+ G I G + K L SLEI
Sbjct: 243 ISEMKQLKSLSIYNNQIGDEGAKFINEMKQLTSLDISGNEIGVEGVIPISEMKQLTSLEI 302
Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
G + D G K LIS + L+SLN+ N++I G +
Sbjct: 303 GGNQIGDEGAK-------------------------LISEMKQLISLNIYNNQIGIEGAK 337
Query: 464 HLKPLKNLRSLTL-------ESCKVTANDIKRLQSRDL 494
+ +K L+SL + E K + ++K+L S D+
Sbjct: 338 FISEMKQLKSLYIGGNQIGDEGVKFIS-EMKQLTSLDI 374
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 150/318 (47%), Gaps = 15/318 (4%)
Query: 6 ISQQIFNELVYSRCLTEVSLEAFRDCALQDLCL-GQYPG--VNDKW----MDVIA----S 54
IS+Q FN + L + F + + +LC+ Q+ VN K+ +D I +
Sbjct: 66 ISKQFFNVIKERSKLVIKFKQKFTETRI-ELCMKSQFMNSIVNLKFSRRLLDSIQVKFIT 124
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
+ L S+D+S + + D G + + L SLD + +I G++ + + +LTSL
Sbjct: 125 EMKQLKSLDISENRIGDEGAKFISEMKQLTSLDIGYN-RIGVVGVKFINEMKHLTSLDI- 182
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N I +G+K+ + L L LD G ++ + L L+I N I +
Sbjct: 183 SGNGIGDEGVKSISELKQLTSLDFNNNRIGDKGAKSISEMKHLTLLSIN-NNHIGAEGAR 241
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+S + LKSL I +++ D G ++ +++LT L++ G + + +S + L L
Sbjct: 242 FISEMKQLKSLSIYNNQIGDEGAKFINEMKQLTSLDISGNEIGVEGVIPISEMKQLTSLE 301
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+ Q+ D+G + S++ L LN+ N+I E + + L+SL + IGDEG+
Sbjct: 302 IGGNQIGDEGAKLISEMKQLISLNIYNNQIGIEGAKFISEMKQLKSLYIGGNQIGDEGVK 361
Query: 295 NLTGLCNLKCLELSDTQV 312
++ + L L++ ++
Sbjct: 362 FISEMKQLTSLDIGYNEI 379
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 103/207 (49%), Gaps = 3/207 (1%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+D+SG+ + D G+ + + L SLDFN +I D G + + + +LT LS NN
Sbjct: 177 LTSLDISGNGIGDEGVKSISELKQLTSLDFNNN-RIGDKGAKSISEMKHLTLLSI-NNNH 234
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I A+G + + + L L + G + + +L SL+I N I + P+S
Sbjct: 235 IGAEGARFISEMKQLKSLSIYNNQIGDEGAKFINEMKQLTSLDIS-GNEIGVEGVIPISE 293
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L SL+I +++ D G + +++L LN+ + +S + L L +
Sbjct: 294 MKQLTSLEIGGNQIGDEGAKLISEMKQLISLNIYNNQIGIEGAKFISEMKQLKSLYIGGN 353
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEIT 265
Q+ D+G + S++ L L++G+NEI
Sbjct: 354 QIGDEGVKFISEMKQLTSLDIGYNEIV 380
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 31/179 (17%)
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA----------------- 389
++S+ +L R + + +T + L LD+ RI D GA
Sbjct: 102 MNSIVNLKFSRRLLDSIQVKFITEMKQLKSLDISENRIGDEGAKFISEMKQLTSLDIGYN 161
Query: 390 -------AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
++ K+L SL+I G G+ D GVK I +L LT L+ + N + DK + IS
Sbjct: 162 RIGVVGVKFINEMKHLTSLDISGNGIGDEGVKSISELKQLTSLDFNNN-RIGDKGAKSIS 220
Query: 443 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV------TANDIKRLQSRDLP 495
+ L L+++N+ I + G R + +K L+SL++ + ++ N++K+L S D+
Sbjct: 221 EMKHLTLLSINNNHIGAEGARFISEMKQLKSLSIYNNQIGDEGAKFINEMKQLTSLDIS 279
>gi|290994342|ref|XP_002679791.1| predicted protein [Naegleria gruberi]
gi|284093409|gb|EFC47047.1| predicted protein [Naegleria gruberi]
Length = 300
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 146/276 (52%), Gaps = 2/276 (0%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL SL IS + + + G Y+ L LT+L++ G + A + +S + + L++ L
Sbjct: 4 NLTSLNISRNWIGEEGAKYISELDNLTILDIHGNDIVANGANHISKMKRITTLSVGLNNL 63
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
+G + S++ L L + N I +E + GL L L++ IGD G +L+ L
Sbjct: 64 GKEGTKYISEMKQLTNLEINNNNIQEEGAKFISGLKQLTELSIHFNNIGDVGTKHLSELK 123
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
L L + + +G G++H+ + L +++S I ++G++ L+ L++++ I
Sbjct: 124 QLTRLNIGENNIGDEGVKHILEMKQLTDLDISNNNIRHKGSEYISGMNQLRILDINSCNI 183
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
G ++ + LT L++ + D GA ++ + K L +LE+ ++D G K + ++S
Sbjct: 184 DPIGAQKISEMKQLTDLNIAWNQFGDEGAKFISDMKQLTTLELFNCDISDIGAKCVSEMS 243
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456
LT L++ +N NL+D+ + +S + L+ L+VS+S+
Sbjct: 244 KLTNLDIGEN-NLSDEGVRAVSNMK-LMILSVSSSK 277
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 139/290 (47%), Gaps = 26/290 (8%)
Query: 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
NLTSL+ RN I +G K + L NL LD+ + G ++ + ++ +L++ N
Sbjct: 4 NLTSLNISRN-WIGEEGAKYISELDNLTILDIHGNDIVANGANHISKMKRITTLSVG-LN 61
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
+ K +S + L +L+I+ + + + G ++ GL++LT L
Sbjct: 62 NLGKEGTKYISEMKQLTNLEINNNNIQEEGAKFISGLKQLTEL----------------- 104
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
S+ + N+ D G + S++ L LN+G N I DE + H+ + L L++ +
Sbjct: 105 --SIHFNNI-----GDVGTKHLSELKQLTRLNIGENNIGDEGVKHILEMKQLTDLDISNN 157
Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
I +G ++G+ L+ L+++ + G + +S + L +N+++ D + ++
Sbjct: 158 NIRHKGSEYISGMNQLRILDINSCNIDPIGAQKISEMKQLTDLNIAWNQFGDEGAKFISD 217
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
+ L +L L I+D G ++ ++ LT+LD+ ++D G + N K
Sbjct: 218 MKQLTTLELFNCDISDIGAKCVSEMSKLTNLDIGENNLSDEGVRAVSNMK 267
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 115/254 (45%), Gaps = 25/254 (9%)
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
+L LN++R + ++G + S++ +L +L++ N+I H+ + + +L++ +
Sbjct: 4 NLTSLNISRNWIGEEGAKYISELDNLTILDIHGNDIVANGANHISKMKRITTLSVGLNNL 63
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
G EG ++ + L LE+++ + G + +SGL L +++ F I D + L+ L
Sbjct: 64 GKEGTKYISEMKQLTNLEINNNNIQEEGAKFISGLKQLTELSIHFNNIGDVGTKHLSELK 123
Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
L LN+ I D G+ + + LT LD+ I G+ Y+ LR L+I +
Sbjct: 124 QLTRLNIGENNIGDEGVKHILEMKQLTDLDISNNNIRHKGSEYISGMNQLRILDINSCNI 183
Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 468
G + I ++ LT LN++ N + G + + +
Sbjct: 184 DPIGAQKISEMKQLTDLNIAWN-------------------------QFGDEGAKFISDM 218
Query: 469 KNLRSLTLESCKVT 482
K L +L L +C ++
Sbjct: 219 KQLTTLELFNCDIS 232
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 92/198 (46%), Gaps = 3/198 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L +++++ +++ + G + L L +F I D G +HL L LT L+
Sbjct: 72 SEMKQLTNLEINNNNIQEEGAKFISGLKQLTELSIHFN-NIGDVGTKHLSELKQLTRLNI 130
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN I +G+K + L LD+ H G + G+ +L L+I CN I
Sbjct: 131 GENN-IGDEGVKHILEMKQLTDLDISNNNIRHKGSEYISGMNQLRILDINSCN-IDPIGA 188
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+ +S + L L I+ ++ D G ++ +++LT L L C ++ +S + L L
Sbjct: 189 QKISEMKQLTDLNIAWNQFGDEGAKFISDMKQLTTLELFNCDISDIGAKCVSEMSKLTNL 248
Query: 234 NLNRCQLSDDGCEKFSKI 251
++ LSD+G S +
Sbjct: 249 DIGENNLSDEGVRAVSNM 266
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 1/141 (0%)
Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
+L SLN+ I + G ++ L LT LD+ G I +GA ++ K + +L + L
Sbjct: 4 NLTSLNISRNWIGEEGAKYISELDNLTILDIHGNDIVANGANHISKMKRITTLSVGLNNL 63
Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 468
G K+I ++ LT L ++ N N+ ++ + ISGL L L++ + I G +HL L
Sbjct: 64 GKEGTKYISEMKQLTNLEINNN-NIQEEGAKFISGLKQLTELSIHFNNIGDVGTKHLSEL 122
Query: 469 KNLRSLTLESCKVTANDIKRL 489
K L L + + +K +
Sbjct: 123 KQLTRLNIGENNIGDEGVKHI 143
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 26/180 (14%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+++ D G HL + L L+ I D G++H+ + LT L NN I +G +
Sbjct: 109 NNIGDVGTKHLSELKQLTRLNIGEN-NIGDEGVKHILEMKQLTDLDISNNN-IRHKGSEY 166
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW---------------------- 164
+G+ L LD+ C G + + +L LNI W
Sbjct: 167 ISGMNQLRILDINSCNIDPIGAQKISEMKQLTDLNIAWNQFGDEGAKFISDMKQLTTLEL 226
Query: 165 CNC-ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
NC I+D K +S ++ L +L I + ++D G+ + + KL +L++ A D+
Sbjct: 227 FNCDISDIGAKCVSEMSKLTNLDIGENNLSDEGVRAVSNM-KLMILSVSSSKKGQAKKDA 285
>gi|29823176|emb|CAD15503.2| probable lrr-gala family type III effector protein (gala 5)
[Ralstonia solanacearum GMI1000]
Length = 538
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 132/491 (26%), Positives = 217/491 (44%), Gaps = 63/491 (12%)
Query: 1 MLPRDISQQI--------FNELVYSRCLTEVSLEA-FRDCALQD-------LCLGQYPGV 44
LP DI ++I L + + ++EA R+ ++D L G YP
Sbjct: 66 QLPPDIFREIARRSDPLTVQRLRVASKPVKAAIEADMRELVIKDRAGLAGVLRAGNYP-- 123
Query: 45 NDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-QISDGGLEHLR 103
+L + L+G+ TD L L ++L++LD + C I+ G+ HL
Sbjct: 124 -------------ALEKLTLAGT-FTDDDLRGLP--ASLKALDLSRCRGSITAAGIAHLS 167
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
L L L+ R N I A+G + A L L++ G L +L +LN+
Sbjct: 168 RLP-LVRLNVR-NKRIGAEGARLLANHPTLTSLNVSNGRIGPEGAQALAANTRLTTLNVS 225
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
N I + K L+ L+SL +S +++ D G L AAC
Sbjct: 226 -GNRIGVAGAKALAANQTLRSLDVSDNRIGDEGAREL-----------------AACTQ- 266
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L L+ NR + DG + +L L +G NEI D ++ L L +LN+
Sbjct: 267 ------LTTLDANRNGIGVDGATALAASRTLTSLAIGGNEIGDAGVLALAANARLTTLNV 320
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
+S G+G +G+ L L L L +G++G L+ T+L +++L + I +
Sbjct: 321 ESTGVGADGVKALAASKTLTWLRLDGNDIGNAGATALAASTSLTTLHLEHSRIGAEGAQA 380
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
LA + L +L+L I D G+ AL++ L L + + D+ A L K L +L+I
Sbjct: 381 LAANTKLTTLDLGYNDIGDAGVRALSANATLVWLSVRRNNLEDASAVSLAAGKTLTTLDI 440
Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
G G+ D G K + +LT L++S N ++ + ++ LVSL++ N+R+ +G R
Sbjct: 441 SGNGIQDQGAKALAANPTLTTLDVSSN-DIKNAGARALAANARLVSLDLRNNRMEESGTR 499
Query: 464 HLKPLKNLRSL 474
L + L SL
Sbjct: 500 ALLANRTLSSL 510
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 32/184 (17%)
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-- 357
+++ L + D + G +G+ LE + L+ T +D LR L +SLK+L+L
Sbjct: 100 ADMRELVIKD-RAGLAGVLRAGNYPALEKLTLAGT-FTDDDLRGLP--ASLKALDLSRCR 155
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
IT G+A L+ L L L++ RI GA L N L SL + G + G +
Sbjct: 156 GSITAAGIAHLSRLP-LVRLNVRNKRIGAEGARLLANHPTLTSLNVSNGRIGPEGAQA-- 212
Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 477
L+ N LT +LNVS +RI AG + L + LRSL +
Sbjct: 213 ---------LAANTRLT--------------TLNVSGNRIGVAGAKALAANQTLRSLDVS 249
Query: 478 SCKV 481
++
Sbjct: 250 DNRI 253
>gi|428317664|ref|YP_007115546.1| leucine-rich repeat-containing protein [Oscillatoria nigro-viridis
PCC 7112]
gi|428241344|gb|AFZ07130.1| leucine-rich repeat-containing protein [Oscillatoria nigro-viridis
PCC 7112]
Length = 782
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 121/352 (34%), Positives = 175/352 (49%), Gaps = 62/352 (17%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
++ LS LTNL +L + S++ D IA L L LT LNLE +T + LSAL +L
Sbjct: 66 TNFTSLSALTNLTALYLQGSQIND--IASLSALTNLTYLNLESNQITD--ITPLSALTNL 121
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD----ECLVHLK------------- 273
YLNLN Q++D S + +L +L+L +N+ITD L +L
Sbjct: 122 TYLNLNHNQITD--ITPLSGLTNLTILSLEYNQITDITGLSALTNLTDLCLGCNQITDIT 179
Query: 274 ---GLTNLESLNLDSCGIGD----EGLVNLT----------------GLCNLKCLELSDT 310
GLTNL ++L++ I D L NLT L NL L +SD
Sbjct: 180 GLLGLTNLTRVSLNNNEITDVTPLSALTNLTKLGIENQEITDISPLSALTNLTELSISD- 238
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
G + LS LTNL + +S GI+D + L+ L++L L++ T T ++ L++
Sbjct: 239 --GIIDISPLSALTNLTELFIS-EGITD--ISPLSALTNLTKLSIIYND-TITEISPLSA 292
Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
LT LT L +ITD A L NL L + +TD + + L++LT LNLS N
Sbjct: 293 LTNLTSLYFLYTQITDITA--LSALTNLTYLYLSDNQITD--ITALSALTNLTYLNLSNN 348
Query: 431 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
+TD + +S LT L LN+SN++IT + L L NL L LE+ ++T
Sbjct: 349 -QITD--IAALSALTNLTYLNLSNNQIT--DITALSALTNLTELHLETNQIT 395
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 118/335 (35%), Positives = 167/335 (49%), Gaps = 40/335 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++L + +TD + L +NL L+ N QI+D + L GL+NLT LS N
Sbjct: 97 TNLTYLNLESNQITD--ITPLSALTNLTYLNLNHN-QITD--ITPLSGLTNLTILSLEYN 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKLESLNIKWCNCITDSDMK 174
G+ A L +L L + T I G GL NL + SLN N ITD +
Sbjct: 152 QITDITGLSALTNLTDLC-LGCNQITDITGLLGLTNLTRV----SLN---NNEITD--VT 201
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
PLS LTNL L I ++TD I+ L L LT L++ + + L +L+ L LF
Sbjct: 202 PLSALTNLTKLGIENQEITD--ISPLSALTNLTELSISDGIIDISPLSALTNLTELFI-- 257
Query: 235 LNRCQLSDDGCEKFSKIGS---LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
+G S + + L L++ +N+ E + L LTNL SL I D
Sbjct: 258 -------SEGITDISPLSALTNLTKLSIIYNDTITE-ISPLSALTNLTSLYFLYTQITD- 308
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
+ L+ L NL L LSD Q+ + + LS LTNL +NLS I+D + L+ L++L
Sbjct: 309 -ITALSALTNLTYLYLSDNQI--TDITALSALTNLTYLNLSNNQITD--IAALSALTNLT 363
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
LNL QITD + AL++LT LT L L +ITD
Sbjct: 364 YLNLSNNQITD--ITALSALTNLTELHLETNQITD 396
>gi|320166208|gb|EFW43107.1| tyrosine-protein kinase Src42A [Capsaspora owczarzaki ATCC 30864]
Length = 1869
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 108/394 (27%), Positives = 171/394 (43%), Gaps = 11/394 (2%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVN 150
QI+ GL+ L +L + NN I + AF+GL LV+L L + T I
Sbjct: 118 QITTVPSSAFTGLTALQTL-YLYNNQIATVAINAFSGLTALVQLYLYNNQITSISANA-- 174
Query: 151 LKGLMKLESL--NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
GL KL +L N W + I S L+ LT L + V S L LQ L L
Sbjct: 175 FSGLSKLNTLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFTGLTALQTLYL 234
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
N + + +++ S L +L L L+ Q++ FS + L L+L N ++
Sbjct: 235 YNNQ---IATVAINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNNWLSAIP 291
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
GLT L L LD+ I TGL L+ L L + Q+ + SGL L+
Sbjct: 292 SSAFTGLTALTQLRLDTNQITTVPSSAFTGLTALQTLYLYNNQIITVATNAFSGLAALQV 351
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
+ L I+ +GLS+L +L L ++ +A T LT LT L L+ +IT
Sbjct: 352 LRLDTNQITTVPANAFSGLSALNTLQLSNNWLSAIPSSAFTGLTALTQLQLYNNQITTVP 411
Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
++ L++L + + + L++L L L N +T + SGL+ L
Sbjct: 412 SSAFTGLTALQTLYLYNNQIATVAINAFSGLTALVQLYLYNN-QITSISANAFSGLSKLN 470
Query: 449 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
+L ++N+ +++ L L L L + ++T
Sbjct: 471 TLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQIT 504
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 105/378 (27%), Positives = 160/378 (42%), Gaps = 2/378 (0%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
G+ T++ + +N IT+ AF GL L L L GL L L +
Sbjct: 56 GIPATTTILYLSSNQITSISSSAFTGLTALTYLQLNNNWLSAIPSSAFTGLTALTQLQL- 114
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+ N IT +GLT L++L + +++ I GL L L L +T+ ++
Sbjct: 115 YNNQITTVPSSAFTGLTALQTLYLYNNQIATVAINAFSGLTALVQLYLYNNQITSISANA 174
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
S L L L LN LS F+ + +L L L N+IT GLT L++L L
Sbjct: 175 FSGLSKLNTLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFTGLTALQTLYL 234
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
+ I + +GL L L L Q+ + SGL+ L +++L +S
Sbjct: 235 YNNQIATVAINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNNWLSAIPSSA 294
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
GL++L L LD QIT +A T LT L L L+ +I L+ L +
Sbjct: 295 FTGLTALTQLRLDTNQITTVPSSAFTGLTALQTLYLYNNQIITVATNAFSGLAALQVLRL 354
Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
+T LS+L L LS N L+ +GLT L L + N++IT+
Sbjct: 355 DTNQITTVPANAFSGLSALNTLQLSNNW-LSAIPSSAFTGLTALTQLQLYNNQITTVPSS 413
Query: 464 HLKPLKNLRSLTLESCKV 481
L L++L L + ++
Sbjct: 414 AFTGLTALQTLYLYNNQI 431
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 112/407 (27%), Positives = 175/407 (42%), Gaps = 32/407 (7%)
Query: 104 GLSNLTSLSFRR--NNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLES 159
G S LT+L+ R NN IT+ AF GL L LDL + T I G GL L
Sbjct: 678 GFSGLTALTDLRLFNNTITSILANAFTGLTKLTYLDLSLNQLTSIPAGA--FSGLTALTQ 735
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L + + N ++ +GLT L L + +++T GL L L L G +T
Sbjct: 736 L-LLYNNWLSAVPSSAFTGLTALLYLYLYNNQITTVAANAFTGLTALVQLQLYGNQITTI 794
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+ + + SL L L +++ F+ + L +L++ N+IT GLT +
Sbjct: 795 SASAFAGMSSLVQLYLYSNRITAIFVNAFTGLTHLSLLDISNNQITSLPANAFTGLTAMT 854
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-------- 331
L+L + + TGL L+ L L + Q+ S + + LT L + L
Sbjct: 855 QLSLYNNSLSAVPSSAFTGLTALQALWLYNNQITSVVVNAFTSLTALVQLQLYGNQITTI 914
Query: 332 ---SFTGISDGSLRKL-------------AGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
+F+G+S SL +L GL++L L L QIT +A T LT LT
Sbjct: 915 PASAFSGLSKLSLLQLNNNWLSAIPSSAFTGLTALTQLQLYNNQITTVPSSAFTGLTALT 974
Query: 376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
L L+G +IT A+ L++L + +T L++L L+LS +T
Sbjct: 975 QLSLYGNQITTISASAFAGLTALQALYLNNNTITTIAANAFAGLTALNWLDLS-GSQITS 1033
Query: 436 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
+ S L L LN+ N+ +++ L L LT+ ++T
Sbjct: 1034 IPANVFSSLPALAQLNLYNNWLSAVPTSAFTGLTALTQLTMYGNRIT 1080
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 107/371 (28%), Positives = 162/371 (43%), Gaps = 11/371 (2%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-L 151
QI+ GL+ L L N IT AFAG+ +LV+L L RI VN
Sbjct: 766 QITTVAANAFTGLTALVQLQLYGNQ-ITTISASAFAGMSSLVQLYL-YSNRITAIFVNAF 823
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI---SCSKVTDSGIAYLKGLQKLTL 208
GL L L+I N IT +GLT + L + S S V S L LQ L L
Sbjct: 824 TGLTHLSLLDIS-NNQITSLPANAFTGLTAMTQLSLYNNSLSAVPSSAFTGLTALQALWL 882
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
N + +T+ +++ ++L +L L L Q++ FS + L +L L N ++
Sbjct: 883 YNNQ---ITSVVVNAFTSLTALVQLQLYGNQITTIPASAFSGLSKLSLLQLNNNWLSAIP 939
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
GLT L L L + I TGL L L L Q+ + +GLT L++
Sbjct: 940 SSAFTGLTALTQLQLYNNQITTVPSSAFTGLTALTQLSLYGNQITTISASAFAGLTALQA 999
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
+ L+ I+ + AGL++L L+L QIT +SL L L+L+ ++
Sbjct: 1000 LYLNNNTITTIAANAFAGLTALNWLDLSGSQITSIPANVFSSLPALAQLNLYNNWLSAVP 1059
Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
+ L L + G +T L++L L L N +T + +GL+ L
Sbjct: 1060 TSAFTGLTALTQLTMYGNRITTISANAFTGLNALVQLFLQSN-QITTISASAFTGLSLLT 1118
Query: 449 SLNVSNSRITS 459
L +SN++IT+
Sbjct: 1119 QLYLSNNQITT 1129
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 112/393 (28%), Positives = 169/393 (43%), Gaps = 30/393 (7%)
Query: 116 NNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN IT AF+GL LV+L L + T I L GL L L + + N IT
Sbjct: 620 NNQITTVPANAFSGLTALVQLQLYGNQITTIPSSA--LTGLSALTQL-LLYNNRITSVPA 676
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL---EGCPVTAACLDSLSALGSL 230
SGLT L L++ + +T GL KLT L+L + + A L+AL L
Sbjct: 677 NGFSGLTALTDLRLFNNTITSILANAFTGLTKLTYLDLSLNQLTSIPAGAFSGLTALTQL 736
Query: 231 FYLN---------------------LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
N L Q++ F+ + +L L L N+IT
Sbjct: 737 LLYNNWLSAVPSSAFTGLTALLYLYLYNNQITTVAANAFTGLTALVQLQLYGNQITTISA 796
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
G+++L L L S I + TGL +L L++S+ Q+ S +GLT + +
Sbjct: 797 SAFAGMSSLVQLYLYSNRITAIFVNAFTGLTHLSLLDISNNQITSLPANAFTGLTAMTQL 856
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
+L +S GL++L++L L QIT + A TSLT L L L+G +IT A
Sbjct: 857 SLYNNSLSAVPSSAFTGLTALQALWLYNNQITSVVVNAFTSLTALVQLQLYGNQITTIPA 916
Query: 390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 449
+ L L++ L+ L++LT L L N +T +GLT L
Sbjct: 917 SAFSGLSKLSLLQLNNNWLSAIPSSAFTGLTALTQLQLYNN-QITTVPSSAFTGLTALTQ 975
Query: 450 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
L++ ++IT+ L L++L L + +T
Sbjct: 976 LSLYGNQITTISASAFAGLTALQALYLNNNTIT 1008
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 118/418 (28%), Positives = 173/418 (41%), Gaps = 33/418 (7%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
S + S L + L+ LD N QI+ GL+ L +L + NN I A
Sbjct: 288 SAIPSSAFTGLTALTQLR-LDTN---QITTVPSSAFTGLTALQTL-YLYNNQIITVATNA 342
Query: 127 FAGL--INLVKLDLERCTRIHGGLVNLKGLMKLESLNIK--WCNCITDSDMKPLSGLTNL 182
F+GL + +++LD + T + GL L +L + W + I S L+ LT L
Sbjct: 343 FSGLAALQVLRLDTNQITTVPANA--FSGLSALNTLQLSNNWLSAIPSSAFTGLTALTQL 400
Query: 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN-------- 234
+ + V S L LQ L L N + V L+AL L+ N
Sbjct: 401 QLYNNQITTVPSSAFTGLTALQTLYLYNNQIATVAINAFSGLTALVQLYLYNNQITSISA 460
Query: 235 --------LNRCQLSDDG-----CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
LN QL+++ F+ + +L L L N+IT GLT L+ L
Sbjct: 461 NAFSGLSKLNTLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFTGLTALQFL 520
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
L + I + +GL L L L Q+ + SGL+ L +++L +S
Sbjct: 521 YLYNNQIATVAINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNNWLSAIPS 580
Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
GL++L L LD QIT A + LT L +L L+ +IT A L L
Sbjct: 581 SAFTGLTALTQLRLDTNQITTVPANAFSGLTALLYLYLYNNQITTVPANAFSGLTALVQL 640
Query: 402 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
++ G +T + LS+LT L L N +T SGLT L L + N+ ITS
Sbjct: 641 QLYGNQITTIPSSALTGLSALTQLLLYNN-RITSVPANGFSGLTALTDLRLFNNTITS 697
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 115/394 (29%), Positives = 166/394 (42%), Gaps = 11/394 (2%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVN 150
QI+ GL+ L +L + NN I + AF+GL LV+L L + T I
Sbjct: 406 QITTVPSSAFTGLTALQTL-YLYNNQIATVAINAFSGLTALVQLYLYNNQITSISANA-- 462
Query: 151 LKGLMKLESL--NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
GL KL +L N W + I S +GLT L L + +++T + GL L
Sbjct: 463 FSGLSKLNTLQLNNNWLSAIPSSA---FTGLTALTQLLLYNNQITTVPSSAFTGLTALQF 519
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L L + +++ S L +L L L+ Q++ FS + L L+L N ++
Sbjct: 520 LYLYNNQIATVAINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNNWLSAIP 579
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
GLT L L LD+ I +GL L L L + Q+ + SGLT L
Sbjct: 580 SSAFTGLTALTQLRLDTNQITTVPANAFSGLTALLYLYLYNNQITTVPANAFSGLTALVQ 639
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
+ L I+ L GLS+L L L +IT + LT LT L LF IT
Sbjct: 640 LQLYGNQITTIPSSALTGLSALTQLLLYNNRITSVPANGFSGLTALTDLRLFNNTITSIL 699
Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
A L L++ LT L++LT L L N L+ +GLT L+
Sbjct: 700 ANAFTGLTKLTYLDLSLNQLTSIPAGAFSGLTALTQLLLYNNW-LSAVPSSAFTGLTALL 758
Query: 449 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
L + N++IT+ L L L L ++T
Sbjct: 759 YLYLYNNQITTVAANAFTGLTALVQLQLYGNQIT 792
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 114/414 (27%), Positives = 170/414 (41%), Gaps = 27/414 (6%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
GL+ LT L NN IT AF GL L L L + GL L L
Sbjct: 487 FTGLTALTQL-LLYNNQITTVPSSAFTGLTALQFLYLYNNQIATVAINAFSGLTALVQLR 545
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+ N IT SGL+ L +L + + ++ + GL LT L L+ +T
Sbjct: 546 LD-TNQITTVPANAFSGLSKLNTLHLYNNWLSAIPSSAFTGLTALTQLRLDTNQITTVPA 604
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
++ S L +L YL L Q++ FS + +L L L N+IT L GL+ L L
Sbjct: 605 NAFSGLTALLYLYLYNNQITTVPANAFSGLTALVQLQLYGNQITTIPSSALTGLSALTQL 664
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISD 338
L + I +GL L L L + + S +GLT L ++LS T I
Sbjct: 665 LLYNNRITSVPANGFSGLTALTDLRLFNNTITSILANAFTGLTKLTYLDLSLNQLTSIPA 724
Query: 339 GSLRKLAGLSSLKSLN--LDA-------------------RQITDTGLAALTSLTGLTHL 377
G+ L L+ L N L A QIT A T LT L L
Sbjct: 725 GAFSGLTALTQLLLYNNWLSAVPSSAFTGLTALLYLYLYNNQITTVAANAFTGLTALVQL 784
Query: 378 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
L+G +IT A+ +L L + +T V L+ L+LL++S N +T
Sbjct: 785 QLYGNQITTISASAFAGMSSLVQLYLYSNRITAIFVNAFTGLTHLSLLDISNN-QITSLP 843
Query: 438 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 491
+GLT + L++ N+ +++ L L++L L + ++T+ + S
Sbjct: 844 ANAFTGLTAMTQLSLYNNSLSAVPSSAFTGLTALQALWLYNNQITSVVVNAFTS 897
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 90/323 (27%), Positives = 138/323 (42%), Gaps = 19/323 (5%)
Query: 72 SGLIHLK--DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
+GL HL D SN QI+ GL+ +T LS NN+++A AF G
Sbjct: 824 TGLTHLSLLDISN---------NQITSLPANAFTGLTAMTQLSLY-NNSLSAVPSSAFTG 873
Query: 130 LINLVKLDL---ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L L L L + + + +L L++L+ + N IT SGL+ L LQ
Sbjct: 874 LTALQALWLYNNQITSVVVNAFTSLTALVQLQ----LYGNQITTIPASAFSGLSKLSLLQ 929
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
++ + ++ + GL LT L L +T + + L +L L+L Q++
Sbjct: 930 LNNNWLSAIPSSAFTGLTALTQLQLYNNQITTVPSSAFTGLTALTQLSLYGNQITTISAS 989
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
F+ + +L+ L L N IT GLT L L+L I + L L L
Sbjct: 990 AFAGLTALQALYLNNNTITTIAANAFAGLTALNWLDLSGSQITSIPANVFSSLPALAQLN 1049
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
L + + + +GLT L + + I+ S GL++L L L + QIT +
Sbjct: 1050 LYNNWLSAVPTSAFTGLTALTQLTMYGNRITTISANAFTGLNALVQLFLQSNQITTISAS 1109
Query: 367 ALTSLTGLTHLDLFGARITDSGA 389
A T L+ LT L L +IT A
Sbjct: 1110 AFTGLSLLTQLYLSNNQITTISA 1132
>gi|168701211|ref|ZP_02733488.1| leucine-rich repeat domain protein [Gemmata obscuriglobus UQM 2246]
Length = 702
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 125/445 (28%), Positives = 194/445 (43%), Gaps = 42/445 (9%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
L LD +F ++ D L+ L L SL R +T GMK A + L LDL R
Sbjct: 195 GLTHLDLSFS-RVGDDDLKLLAAFPKLKSLRLERTQ-VTDAGMKHLAAVEGLEALDLSRL 252
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
GL L GL L +L + + +T + ++P +G L L +S SKV + +A +
Sbjct: 253 RVTDAGLKELAGLKNLRALTLLFTQ-VTGAGLRPFAG-AGLTHLALSGSKVKAADVADVV 310
Query: 202 GLQKLTLLNLEG-CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
+ L L +EG P A L+ L L L+ L + S L+ ++L
Sbjct: 311 ACRALAALAVEGRWPADAVA--QLAGLPELRSLHFQSDLLDGKVLAELSGASKLEAVHLA 368
Query: 261 FNEITDECLVHLKGLTNL-----------------ESLNLDSCG--IGDEGLVNLTGLCN 301
+TD+ L L+ L E ++LD G + GL LT N
Sbjct: 369 --TVTDDALAGLRRAGKLHTIPQARAERGRPAGPDEVVHLDLSGQPVTGAGLKELTVFRN 426
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-----ISDGSLRKLAGLSSLKSLNLD 356
L L L +T+V + G+ L+ L L ++ L G ++ +R+LA L +L+ L+L
Sbjct: 427 LDTLVLRNTRV-AGGIGALADLRKLSALTLPLYGGDDRAVTPAEMRRLAALDTLEELHLH 485
Query: 357 ARQITDTGLA-ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
+ G+A A+ S+ LT L D+ K+LR+L G G+TD G
Sbjct: 486 G--VLVPGMARAVASIPNLTTLS---GTFQDTDLREFPALKHLRALMTGGAGITDEGAWD 540
Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
+ + L ++LS LTD ++ L L L +S + +T G++ L +K LR+L
Sbjct: 541 VARMKRLECVSLSDTRRLTDAGARDLAALPNLKHLCLSRTGVTDEGVQVLAGVKTLRTLW 600
Query: 476 LESCKVTANDIKRLQSRDLPNLVSF 500
L KV + L P LV+
Sbjct: 601 LSEIKVGPAGVAALGRH--PGLVAL 623
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 127/470 (27%), Positives = 204/470 (43%), Gaps = 66/470 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
L S+ L + VTD+G+ HL L++LD + ++++D GL+ L GL NL +L+
Sbjct: 218 PKLKSLRLERTQVTDAGMKHLAAVEGLEALDLSR-LRVTDAGLKELAGLKNLRALTLLFT 276
Query: 117 NAITAQGMKAFAG--LINL------VKL----DLERCTRIHG----------GLVNLKGL 154
+T G++ FAG L +L VK D+ C + + L GL
Sbjct: 277 Q-VTGAGLRPFAGAGLTHLALSGSKVKAADVADVVACRALAALAVEGRWPADAVAQLAGL 335
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK------------- 201
+L SL+ + + + + LSG + L+++ ++ VTD +A L+
Sbjct: 336 PELRSLHFQ-SDLLDGKVLAELSGASKLEAVHLAT--VTDDALAGLRRAGKLHTIPQARA 392
Query: 202 ------GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G ++ L+L G PVT A L L+ +L L L +++ G + + L
Sbjct: 393 ERGRPAGPDEVVHLDLSGQPVTGAGLKELTVFRNLDTLVLRNTRVAG-GIGALADLRKLS 451
Query: 256 VLNLGF-----NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN-LTGLCNLKCLE--L 307
L L +T + L L LE L+L G+ G+ + + NL L
Sbjct: 452 ALTLPLYGGDDRAVTPAEMRRLAALDTLEELHLH--GVLVPGMARAVASIPNLTTLSGTF 509
Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLA 366
DT LR L +L ++ GI+D +A + L+ ++L D R++TD G
Sbjct: 510 QDTD-----LREFPALKHLRALMTGGAGITDEGAWDVARMKRLECVSLSDTRRLTDAGAR 564
Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
L +L L HL L +TD G L K LR+L + + AGV + L L+
Sbjct: 565 DLAALPNLKHLCLSRTGVTDEGVQVLAGVKTLRTLWLSEIKVGPAGVAALGRHPGLVALD 624
Query: 427 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
LS E ++G+T L LN++ + L L L +LR L L
Sbjct: 625 LSGAPR---GEAEPLAGITTLEYLNLAGALTGERTLAALAKLPHLRVLHL 671
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 132/293 (45%), Gaps = 45/293 (15%)
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
+ +KI ++ + L + T L L L L+L +GD+ L L LK L
Sbjct: 165 EIAKIDNVTYIGLSSSRDTGAKLRALAAAKGLTHLDLSFSRVGDDDLKLLAAFPKLKSLR 224
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
L TQV +G++HL+ + LE+++LS ++D L++LAGL +L++L L Q+T GL
Sbjct: 225 LERTQVTDAGMKHLAAVEGLEALDLSRLRVTDAGLKELAGLKNLRALTLLFTQVTGAGLR 284
Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD-----AGVKHIK---- 417
GLTHL L G+++ + A + + L +L + G D AG+ ++
Sbjct: 285 PFAG-AGLTHLALSGSKVKAADVADVVACRALAALAVEGRWPADAVAQLAGLPELRSLHF 343
Query: 418 -----------DLSSLTLLNLSQNCNLTDKTLELI-------------------SGLTGL 447
+LS + L +TD L + +G +
Sbjct: 344 QSDLLDGKVLAELSGASKLEAVHLATVTDDALAGLRRAGKLHTIPQARAERGRPAGPDEV 403
Query: 448 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN-----DIKRLQSRDLP 495
V L++S +T AGL+ L +NL +L L + +V D+++L + LP
Sbjct: 404 VHLDLSGQPVTGAGLKELTVFRNLDTLVLRNTRVAGGIGALADLRKLSALTLP 456
>gi|46445682|ref|YP_007047.1| hypothetical protein pc0048 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399323|emb|CAF22772.1| hypothetical protein pc0048 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 531
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 123/225 (54%), Gaps = 28/225 (12%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
+ +TD+ L+ LK+C NL++L C ++D GL L L+NL L+ + +T +G+
Sbjct: 306 NAHLTDAHLLALKNCKNLKALHLQACHNLTDDGLASLTSLTNLQYLNLSCCDKLTNKGLA 365
Query: 126 AFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
F LI L L+L C I GL +LK L+ L+ LN LSG
Sbjct: 366 HFKSLIALQYLNLSGCAFITDAGLAHLKPLVALQYLN--------------LSG------ 405
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSD 242
C+ +TD+G+A+LK L L LNL GC +T A L L+ L +L +L+L+ C L++
Sbjct: 406 ----CAFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLTPLVTLKHLDLSWCNSLTN 461
Query: 243 DGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC 286
G E+ + + +L+ LNL G +T+ L HL LTNL+ LNL+ C
Sbjct: 462 AGLERLASLVALQHLNLSGCIYLTEAGLTHLTSLTNLQQLNLNHC 506
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 132/264 (50%), Gaps = 43/264 (16%)
Query: 255 KVLNLGFNEI-----------TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNL 302
K+LN NEI TD L+ LK NL++L+L +C + D+GL +LT L NL
Sbjct: 289 KILNYFSNEIEKLNFSENAHLTDAHLLALKNCKNLKALHLQACHNLTDDGLASLTSLTNL 348
Query: 303 KCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
+ L LS ++ + GL H L L+ +NLS IT
Sbjct: 349 QYLNLSCCDKLTNKGLAHFKSLIALQYLNLSGCAF-----------------------IT 385
Query: 362 DTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDL 419
D GLA L L L +L+L G A ITD+G A+L+ L+ L + G +TDAG+ H+ L
Sbjct: 386 DAGLAHLKPLVALQYLNLSGCAFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLTPL 445
Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS-RITSAGLRHLKPLKNLRSLTLES 478
+L L+LS +LT+ LE ++ L L LN+S +T AGL HL L NL+ L L
Sbjct: 446 VTLKHLDLSWCNSLTNAGLERLASLVALQHLNLSGCIYLTEAGLTHLTSLTNLQQLNLNH 505
Query: 479 CKVTAN-DIKRLQSRDL---PNLV 498
C+ A+ K R L PNL+
Sbjct: 506 CEHFADVRFKLTHFRTLLANPNLI 529
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 102/190 (53%), Gaps = 3/190 (1%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD GL L +NLQ L+ + C ++++ GL H + L L L+ IT G+
Sbjct: 333 NLTDDGLASLTSLTNLQYLNLSCCDKLTNKGLAHFKSLIALQYLNLSGCAFITDAGLAHL 392
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L+ L L+L C I GL +LK L+ L+ LN+ C ITD+ + L+ L LK L
Sbjct: 393 KPLVALQYLNLSGCAFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLTPLVTLKHLD 452
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
+S C+ +T++G+ L L L LNL GC +T A L L++L +L LNLN C+ D
Sbjct: 453 LSWCNSLTNAGLERLASLVALQHLNLSGCIYLTEAGLTHLTSLTNLQQLNLNHCEHFADV 512
Query: 245 CEKFSKIGSL 254
K + +L
Sbjct: 513 RFKLTHFRTL 522
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 120/247 (48%), Gaps = 29/247 (11%)
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECL 269
E +T A L +L +L L+L C L+DDG + + +L+ LNL +++T++ L
Sbjct: 305 ENAHLTDAHLLALKNCKNLKALHLQACHNLTDDGLASLTSLTNLQYLNLSCCDKLTNKGL 364
Query: 270 VHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLE 327
H K L L+ LNL C I D GL +L L L+ L LS + +GL HL L L+
Sbjct: 365 AHFKSLIALQYLNLSGCAFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLKPLVALQ 424
Query: 328 SINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARIT 385
+NLS I+D L L L +LK L+L +T+ GL L SL L HL+L
Sbjct: 425 YLNLSGCAFITDAGLAHLTPLVTLKHLDLSWCNSLTNAGLERLASLVALQHLNL------ 478
Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 445
SG YL T+AG+ H+ L++L LNL+ + D +L T
Sbjct: 479 -SGCIYL----------------TEAGLTHLTSLTNLQQLNLNHCEHFADVRFKLTHFRT 521
Query: 446 GLVSLNV 452
L + N+
Sbjct: 522 LLANPNL 528
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 68/130 (52%), Gaps = 6/130 (4%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L ++LSG + +TD+GL HLK LQ L+ + C I+D GL HL L L L
Sbjct: 397 ALQYLNLSGCAFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLTPLVTLKHLDLSWC 456
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N++T G++ A L+ L L+L C + GL +L L L+ LN+ C D K
Sbjct: 457 NSLTNAGLERLASLVALQHLNLSGCIYLTEAGLTHLTSLTNLQQLNLNHCEHFADVRFK- 515
Query: 176 LSGLTNLKSL 185
LT+ ++L
Sbjct: 516 ---LTHFRTL 522
>gi|17546520|ref|NP_519922.1| GALA protein 3 [Ralstonia solanacearum GMI1000]
Length = 522
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 132/491 (26%), Positives = 217/491 (44%), Gaps = 63/491 (12%)
Query: 1 MLPRDISQQI--------FNELVYSRCLTEVSLEA-FRDCALQD-------LCLGQYPGV 44
LP DI ++I L + + ++EA R+ ++D L G YP
Sbjct: 50 QLPPDIFREIARRSDPLTVQRLRVASKPVKAAIEADMRELVIKDRAGLAGVLRAGNYP-- 107
Query: 45 NDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-QISDGGLEHLR 103
+L + L+G+ TD L L ++L++LD + C I+ G+ HL
Sbjct: 108 -------------ALEKLTLAGT-FTDDDLRGLP--ASLKALDLSRCRGSITAAGIAHLS 151
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
L L L+ R N I A+G + A L L++ G L +L +LN+
Sbjct: 152 RLP-LVRLNVR-NKRIGAEGARLLANHPTLTSLNVSNGRIGPEGAQALAANTRLTTLNVS 209
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
N I + K L+ L+SL +S +++ D G L AAC
Sbjct: 210 -GNRIGVAGAKALAANQTLRSLDVSDNRIGDEGAREL-----------------AACTQ- 250
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L L+ NR + DG + +L L +G NEI D ++ L L +LN+
Sbjct: 251 ------LTTLDANRNGIGVDGATALAASRTLTSLAIGGNEIGDAGVLALAANARLTTLNV 304
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
+S G+G +G+ L L L L +G++G L+ T+L +++L + I +
Sbjct: 305 ESTGVGADGVKALAASKTLTWLRLDGNDIGNAGATALAASTSLTTLHLEHSRIGAEGAQA 364
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
LA + L +L+L I D G+ AL++ L L + + D+ A L K L +L+I
Sbjct: 365 LAANTKLTTLDLGYNDIGDAGVRALSANATLVWLSVRRNNLEDASAVSLAAGKTLTTLDI 424
Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
G G+ D G K + +LT L++S N ++ + ++ LVSL++ N+R+ +G R
Sbjct: 425 SGNGIQDQGAKALAANPTLTTLDVSSN-DIKNAGARALAANARLVSLDLRNNRMEESGTR 483
Query: 464 HLKPLKNLRSL 474
L + L SL
Sbjct: 484 ALLANRTLSSL 494
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 32/184 (17%)
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-- 357
+++ L + D + G +G+ LE + L+ T +D LR L +SLK+L+L
Sbjct: 84 ADMRELVIKD-RAGLAGVLRAGNYPALEKLTLAGT-FTDDDLRGLP--ASLKALDLSRCR 139
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
IT G+A L+ L L L++ RI GA L N L SL + G + G +
Sbjct: 140 GSITAAGIAHLSRLP-LVRLNVRNKRIGAEGARLLANHPTLTSLNVSNGRIGPEGAQA-- 196
Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 477
L+ N LT +LNVS +RI AG + L + LRSL +
Sbjct: 197 ---------LAANTRLT--------------TLNVSGNRIGVAGAKALAANQTLRSLDVS 233
Query: 478 SCKV 481
++
Sbjct: 234 DNRI 237
>gi|46446627|ref|YP_007992.1| hypothetical protein pc0993 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400268|emb|CAF23717.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 478
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 121/224 (54%), Gaps = 7/224 (3%)
Query: 264 ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLS 321
+TD LK NL+ L ++C + D+GL +L L L+ L L +V +GL HL+
Sbjct: 238 LTDAHFSALKECKNLKILTFETCQALTDDGLAHLASLTALQHLGLRGCDKVTDAGLAHLT 297
Query: 322 GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL 379
L L+ ++LSF I+D L L L++L+ L L +T GLA LT L L +LDL
Sbjct: 298 SLRALQYLDLSFCRNITDAGLAHLTPLTALQRLLLKKCENLTGAGLAHLTPLKALQYLDL 357
Query: 380 -FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
+ +TD G A+LR L+ L++ LTDAG+ H+ L +LT L L LTD
Sbjct: 358 SYWDNLTDDGLAHLRPLVALQHLDLANCYELTDAGLAHLTPLVALTHLKLIWCHKLTDAG 417
Query: 438 LELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCK 480
L + L L LN+S+ R +T AGL HL PL L+ L L C+
Sbjct: 418 LAHLRPLVALKHLNLSSCRNLTDAGLAHLIPLTALQYLNLSDCR 461
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 125/237 (52%), Gaps = 11/237 (4%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHL 77
LT+ A ++C L+ L + D + +AS ++L + L G D VTD+GL HL
Sbjct: 238 LTDAHFSALKECKNLKILTFETCQALTDDGLAHLASL-TALQHLGLRGCDKVTDAGLAHL 296
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
LQ LD +FC I+D GL HL L+ L L ++ +T G+ L L LD
Sbjct: 297 TSLRALQYLDLSFCRNITDAGLAHLTPLTALQRLLLKKCENLTGAGLAHLTPLKALQYLD 356
Query: 138 LERCTRI-HGGLVNLKGLMKLESLNIKWCNCITD---SDMKPLSGLTNLKSLQISCSKVT 193
L + GL +L+ L+ L+ L++ C +TD + + PL LT+LK I C K+T
Sbjct: 357 LSYWDNLTDDGLAHLRPLVALQHLDLANCYELTDAGLAHLTPLVALTHLK--LIWCHKLT 414
Query: 194 DSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKF 248
D+G+A+L+ L L LNL C +T A L L L +L YLNL+ C +L+D G F
Sbjct: 415 DAGLAHLRPLVALKHLNLSSCRNLTDAGLAHLIPLTALQYLNLSDCRKLTDTGLASF 471
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 92/258 (35%), Positives = 131/258 (50%), Gaps = 30/258 (11%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLK 273
+T A +L +L L CQ L+DDG + + +L+ L L G +++TD L HL
Sbjct: 238 LTDAHFSALKECKNLKILTFETCQALTDDGLAHLASLTALQHLGLRGCDKVTDAGLAHLT 297
Query: 274 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINL 331
L L+ L+L C I D GL +LT L L+ L L + + +GL HL+ L L+ ++L
Sbjct: 298 SLRALQYLDLSFCRNITDAGLAHLTPLTALQRLLLKKCENLTGAGLAHLTPLKALQYLDL 357
Query: 332 SFT-GISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
S+ ++D L L L +L+ L+L + ++TD GLA LT L LTHL L
Sbjct: 358 SYWDNLTDDGLAHLRPLVALQHLDLANCYELTDAGLAHLTPLVALTHLKL---------- 407
Query: 390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 449
I LTDAG+ H++ L +L LNLS NLTD L + LT L
Sbjct: 408 -------------IWCHKLTDAGLAHLRPLVALKHLNLSSCRNLTDAGLAHLIPLTALQY 454
Query: 450 LNVSNSR-ITSAGLRHLK 466
LN+S+ R +T GL K
Sbjct: 455 LNLSDCRKLTDTGLASFK 472
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 120/230 (52%), Gaps = 6/230 (2%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI- 144
L F+ ++D L+ NL L+F A+T G+ A L L L L C ++
Sbjct: 230 LHFSNQTYLTDAHFSALKECKNLKILTFETCQALTDDGLAHLASLTALQHLGLRGCDKVT 289
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGL 203
GL +L L L+ L++ +C ITD+ + L+ LT L+ L + C +T +G+A+L L
Sbjct: 290 DAGLAHLTSLRALQYLDLSFCRNITDAGLAHLTPLTALQRLLLKKCENLTGAGLAHLTPL 349
Query: 204 QKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF 261
+ L L+L +T L L L +L +L+L C +L+D G + + +L L L +
Sbjct: 350 KALQYLDLSYWDNLTDDGLAHLRPLVALQHLDLANCYELTDAGLAHLTPLVALTHLKLIW 409
Query: 262 -NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD 309
+++TD L HL+ L L+ LNL SC + D GL +L L L+ L LSD
Sbjct: 410 CHKLTDAGLAHLRPLVALKHLNLSSCRNLTDAGLAHLIPLTALQYLNLSD 459
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 73/137 (53%), Gaps = 2/137 (1%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++T +GL HL LQ LD ++ ++D GL HLR L L L +T G+
Sbjct: 337 NLTGAGLAHLTPLKALQYLDLSYWDNLTDDGLAHLRPLVALQHLDLANCYELTDAGLAHL 396
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L+ L L L C ++ GL +L+ L+ L+ LN+ C +TD+ + L LT L+ L
Sbjct: 397 TPLVALTHLKLIWCHKLTDAGLAHLRPLVALKHLNLSSCRNLTDAGLAHLIPLTALQYLN 456
Query: 187 IS-CSKVTDSGIAYLKG 202
+S C K+TD+G+A K
Sbjct: 457 LSDCRKLTDTGLASFKA 473
Score = 38.1 bits (87), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL HL+ L+ L+ + C ++D GL HL L+ L L+ +T G+ +F
Sbjct: 413 LTDAGLAHLRPLVALKHLNLSSCRNLTDAGLAHLIPLTALQYLNLSDCRKLTDTGLASFK 472
Query: 129 GLI 131
I
Sbjct: 473 ASI 475
>gi|290994540|ref|XP_002679890.1| predicted protein [Naegleria gruberi]
gi|284093508|gb|EFC47146.1| predicted protein [Naegleria gruberi]
Length = 293
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 123/234 (52%), Gaps = 1/234 (0%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
+G + S+I L L++ N+I E + + L SLN+ GIG EG ++ + L
Sbjct: 17 EGGKFISEIKQLTSLDISDNQIGVEGAKLISEMKQLTSLNIFKNGIGVEGAKLISEMKQL 76
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L++S + G++ +S + L S+++S I + ++G+ L SLN+ +I+D
Sbjct: 77 TSLDISGNLIYDEGVKSISEMKQLTSLDISKNEIGVEGAKLISGMKQLTSLNISKNEISD 136
Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
G ++ + LT L ++ + I D GA YL K L SL+I + G K I ++ L
Sbjct: 137 EGAKLISEMKQLTSLTIYKSGIDDKGAKYLSEIKQLTSLDISSNPMGVEGAKFISEMKQL 196
Query: 423 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
T L++S N + D+ E ISG+ L SLN+SN+ I G + + +K L SL +
Sbjct: 197 TSLDISNNL-IYDEGAEFISGMKQLTSLNISNNIILDEGAKLISEMKQLTSLDI 249
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 138/280 (49%), Gaps = 1/280 (0%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L SL I +++ G ++ +++LT L++ + +S + L LN+ +
Sbjct: 1 MKQLTSLSIGVNEIGVEGGKFISEIKQLTSLDISDNQIGVEGAKLISEMKQLTSLNIFKN 60
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ +G + S++ L L++ N I DE + + + L SL++ IG EG ++G
Sbjct: 61 GIGVEGAKLISEMKQLTSLDISGNLIYDEGVKSISEMKQLTSLDISKNEIGVEGAKLISG 120
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
+ L L +S ++ G + +S + L S+ + +GI D + L+ + L SL++ +
Sbjct: 121 MKQLTSLNISKNEISDEGAKLISEMKQLTSLTIYKSGIDDKGAKYLSEIKQLTSLDISSN 180
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
+ G ++ + LT LD+ I D GA ++ K L SL I + D G K I +
Sbjct: 181 PMGVEGAKFISEMKQLTSLDISNNLIYDEGAEFISGMKQLTSLNISNNIILDEGAKLISE 240
Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
+ LT L++ N + D+ + ISG+ L SL V +RI+
Sbjct: 241 MKQLTSLDICYN-EIGDEGAKFISGMKQLTSLYVYANRIS 279
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 118/237 (49%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL I + + G + +++LT L++ G + + S+S + L L
Sbjct: 44 KLISEMKQLTSLNIFKNGIGVEGAKLISEMKQLTSLDISGNLIYDEGVKSISEMKQLTSL 103
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
++++ ++ +G + S + L LN+ NEI+DE + + L SL + GI D+G
Sbjct: 104 DISKNEIGVEGAKLISGMKQLTSLNISKNEISDEGAKLISEMKQLTSLTIYKSGIDDKGA 163
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L+ + L L++S +G G + +S + L S+++S I D ++G+ L SL
Sbjct: 164 KYLSEIKQLTSLDISSNPMGVEGAKFISEMKQLTSLDISNNLIYDEGAEFISGMKQLTSL 223
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
N+ I D G ++ + LT LD+ I D GA ++ K L SL + ++D
Sbjct: 224 NISNNIILDEGAKLISEMKQLTSLDICYNEIGDEGAKFISGMKQLTSLYVYANRISD 280
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 96/180 (53%), Gaps = 10/180 (5%)
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
LT+L SI ++ G+ G ++ + L SL++ QI G ++ + LT L++F
Sbjct: 4 LTSL-SIGVNEIGVEGGKF--ISEIKQLTSLDISDNQIGVEGAKLISEMKQLTSLNIFKN 60
Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
I GA + K L SL+I G + D GVK I ++ LT L++S+N + + +LIS
Sbjct: 61 GIGVEGAKLISEMKQLTSLDISGNLIYDEGVKSISEMKQLTSLDISKN-EIGVEGAKLIS 119
Query: 443 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV------TANDIKRLQSRDLPN 496
G+ L SLN+S + I+ G + + +K L SLT+ + ++IK+L S D+ +
Sbjct: 120 GMKQLTSLNISKNEISDEGAKLISEMKQLTSLTIYKSGIDDKGAKYLSEIKQLTSLDISS 179
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 106/216 (49%), Gaps = 3/216 (1%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
+ + L SLD + + I D G++ + + LTSL +N I +G K +G+ L L
Sbjct: 70 ISEMKQLTSLDISGNL-IYDEGVKSISEMKQLTSLDISKNE-IGVEGAKLISGMKQLTSL 127
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
++ + G + + +L SL I + + I D K LS + L SL IS + + G
Sbjct: 128 NISKNEISDEGAKLISEMKQLTSLTI-YKSGIDDKGAKYLSEIKQLTSLDISSNPMGVEG 186
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
++ +++LT L++ + + +S + L LN++ + D+G + S++ L
Sbjct: 187 AKFISEMKQLTSLDISNNLIYDEGAEFISGMKQLTSLNISNNIILDEGAKLISEMKQLTS 246
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L++ +NEI DE + G+ L SL + + I DE
Sbjct: 247 LDICYNEIGDEGAKFISGMKQLTSLYVYANRISDEA 282
>gi|290993458|ref|XP_002679350.1| leucine rich repeat protein [Naegleria gruberi]
gi|284092966|gb|EFC46606.1| leucine rich repeat protein [Naegleria gruberi]
Length = 528
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 103/353 (29%), Positives = 181/353 (51%), Gaps = 11/353 (3%)
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
K L L++ NC + +K L L +L L +S +K + G+ Y+ ++ LT LN+
Sbjct: 125 KRFYNLRELDLSGQNCYREG-VKCLKSLKHLTVLNVSKTKCAN-GVKYIGMIENLTSLNI 182
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
+ ++ LS+L L L++N C L+ + + S++ SL L++G N++ L+
Sbjct: 183 SSVHLENQDVEHLSSLKKLTSLDVNNCNLTFEDADIISRLKSLTFLDIGNNDLGPLGLLP 242
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
+ + +L++L+++ I E +LT + NL L +S G+ GL+ +S + NL +++
Sbjct: 243 ISSMESLQTLHINRIWIESESCESLTKMINLTELYISKNDFGNEGLKWISSMKNLRVLDI 302
Query: 332 S----FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
+ D + + +A L+ L LN+ +IT +G LTSLT LT L + G I D
Sbjct: 303 GNHSIIDALGDEAAKLVASLTQLTYLNISQHEITSSGAKYLTSLTKLTTLFIDGNEICDD 362
Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
+ + K L L I GG ++ GVK I L LT+L++S+ + L+ + + L
Sbjct: 363 FLDSISSLKELTYLNISGGQISVKGVKSISKLPRLTILDISECVGCCSEVLKQLGLMKQL 422
Query: 448 VSLNVSNSRITSA--GLRHL-KPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 497
SL++S + + + G ++ K L NL L + C + N IK + LPNL
Sbjct: 423 TSLHLSLTDLVESVEGFKYWHKNLINLTYLEMNFCGLDDNAIKWISG--LPNL 473
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 123/446 (27%), Positives = 204/446 (45%), Gaps = 46/446 (10%)
Query: 83 LQSLDFNFCI----QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
+ + FNF I + H + + + L + N I K F NL +LDL
Sbjct: 79 MTRIKFNFRISERREWKKLSQSHQKYIDRVECLHLKYNLLIFTIIQKRFY---NLRELDL 135
Query: 139 --ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
+ C R G+ LK L L LN+ C + +K + + NL SL IS + +
Sbjct: 136 SGQNCYR--EGVKCLKSLKHLTVLNVSKTKCA--NGVKYIGMIENLTSLNISSVHLENQD 191
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
+ +L L+KLT L++ C +T D +S L SL +L++ L G S + SL+
Sbjct: 192 VEHLSSLKKLTSLDVNNCNLTFEDADIISRLKSLTFLDIGNNDLGPLGLLPISSMESLQT 251
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV---- 312
L++ I E L + NL L + G+EGL ++ + NL+ L++ + +
Sbjct: 252 LHINRIWIESESCESLTKMINLTELYISKNDFGNEGLKWISSMKNLRVLDIGNHSIIDAL 311
Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
G + ++ LT L +N+S I+ + L L+ L +L +D +I D L +++SL
Sbjct: 312 GDEAAKLVASLTQLTYLNISQHEITSSGAKYLTSLTKLTTLFIDGNEICDDFLDSISSLK 371
Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEI--CGG--------------------GLTD 410
LT+L++ G +I+ G + L L+I C G LTD
Sbjct: 372 ELTYLNISGGQISVKGVKSISKLPRLTILDISECVGCCSEVLKQLGLMKQLTSLHLSLTD 431
Query: 411 -----AGVKHI-KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
G K+ K+L +LT L ++ C L D ++ ISGL L L++ ++ +T ++H
Sbjct: 432 LVESVEGFKYWHKNLINLTYLEMNF-CGLDDNAIKWISGLPNLKYLDLQSNDLTDDCIQH 490
Query: 465 LKPLKNLRSLTLESCKVTANDIKRLQ 490
L +K L L+L +T KRL+
Sbjct: 491 LLGMKKLEYLSLFGNNMTEKKTKRLE 516
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 159/347 (45%), Gaps = 49/347 (14%)
Query: 52 IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111
I S+ SL +D+ +D+ GL+ + +LQ+L N I I E L + NLT L
Sbjct: 218 IISRLKSLTFLDIGNNDLGPLGLLPISSMESLQTLHINR-IWIESESCESLTKMINLTEL 276
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
+N+ +G+K + + NL LD+ + I + + D
Sbjct: 277 YISKND-FGNEGLKWISSMKNLRVLDIGNHSII---------------------DALGDE 314
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
K ++ LT L L IS ++T SG YL L KLT L ++G + LDS+S+L L
Sbjct: 315 AAKLVASLTQLTYLNISQHEITSSGAKYLTSLTKLTTLFIDGNEICDDFLDSISSLKELT 374
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
YLN++ Q+S G + SK+ L +L++ EC+ G E
Sbjct: 375 YLNISGGQISVKGVKSISKLPRLTILDIS------ECV-----------------GCCSE 411
Query: 292 GLVNLTGLCNLKCLELSDTQVGSS--GLRHL-SGLTNLESINLSFTGISDGSLRKLAGLS 348
L L + L L LS T + S G ++ L NL + ++F G+ D +++ ++GL
Sbjct: 412 VLKQLGLMKQLTSLHLSLTDLVESVEGFKYWHKNLINLTYLEMNFCGLDDNAIKWISGLP 471
Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
+LK L+L + +TD + L + L +L LFG +T+ L +
Sbjct: 472 NLKYLDLQSNDLTDDCIQHLLGMKKLEYLSLFGNNMTEKKTKRLEKY 518
>gi|290985429|ref|XP_002675428.1| predicted protein [Naegleria gruberi]
gi|284089024|gb|EFC42684.1| predicted protein [Naegleria gruberi]
Length = 451
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 170/345 (49%), Gaps = 32/345 (9%)
Query: 160 LNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+N+ + + + DS + K +S + L SL IS + + D + +++LT L++ +
Sbjct: 110 VNVTYSDWLLDSFEEAKFISKMKQLTSLSISGNGIGDEEAKLISEMKQLTSLDISANLIG 169
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
LS + L LN+ + ++ D+G + S++ L L++ + ++ E ++ +
Sbjct: 170 DEGAKYLSEMKQLISLNIGKNEI-DEGAKYISEMKQLASLDISYTQVDVEGAKCIREMRQ 228
Query: 278 LESLNLDSCG--IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
L SLN+ CG IG EG+ ++ + L L + ++ +G G + +S + L S+N+S
Sbjct: 229 LTSLNI--CGNRIGIEGVKLISEMRQLTSLNIGESDIGIEGTKLISEMKQLTSLNISNNL 286
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
I D + ++ + L SLN+ A +I + G ++ + L L++ RI G +
Sbjct: 287 IGDEGAKLISEMKQLISLNIRANRIVNQGAKFISEMRQLRSLNISNNRIGIEGVKLISEM 346
Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS------------- 442
K L SL I +++ G K I ++ LTLLN+S N + D+ +LIS
Sbjct: 347 KQLISLNIRSNRISNEGTKLISEMRQLTLLNISNN-EIGDEETKLISEMKQLKSLDISYN 405
Query: 443 --GLTG---------LVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
G+ G L SLN++++RI G + + +K L S+TL
Sbjct: 406 QIGIEGAKLISEMKQLTSLNIADNRIGGEGAKLISEMKQLTSITL 450
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 111/213 (52%), Gaps = 2/213 (0%)
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
+ L SL++ GIGDE ++ + L L++S +G G ++LS + L S+N+
Sbjct: 131 MKQLTSLSISGNGIGDEEAKLISEMKQLTSLDISANLIGDEGAKYLSEMKQLISLNIGKN 190
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
I +G+ + ++ + L SL++ Q+ G + + LT L++ G RI G +
Sbjct: 191 EIDEGA-KYISEMKQLASLDISYTQVDVEGAKCIREMRQLTSLNICGNRIGIEGVKLISE 249
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
+ L SL I + G K I ++ LT LN+S N + D+ +LIS + L+SLN+
Sbjct: 250 MRQLTSLNIGESDIGIEGTKLISEMKQLTSLNISNNL-IGDEGAKLISEMKQLISLNIRA 308
Query: 455 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 487
+RI + G + + ++ LRSL + + ++ +K
Sbjct: 309 NRIVNQGAKFISEMRQLRSLNISNNRIGIEGVK 341
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/323 (26%), Positives = 150/323 (46%), Gaps = 3/323 (0%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
+ LTSLS N I + K + + L LD+ G L + +L SLNI
Sbjct: 131 MKQLTSLSIS-GNGIGDEEAKLISEMKQLTSLDISANLIGDEGAKYLSEMKQLISLNIGK 189
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
D K +S + L SL IS ++V G ++ +++LT LN+ G + + +
Sbjct: 190 NEI--DEGAKYISEMKQLASLDISYTQVDVEGAKCIREMRQLTSLNICGNRIGIEGVKLI 247
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
S + L LN+ + +G + S++ L LN+ N I DE + + L SLN+
Sbjct: 248 SEMRQLTSLNIGESDIGIEGTKLISEMKQLTSLNISNNLIGDEGAKLISEMKQLISLNIR 307
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
+ I ++G ++ + L+ L +S+ ++G G++ +S + L S+N+ IS+ + +
Sbjct: 308 ANRIVNQGAKFISEMRQLRSLNISNNRIGIEGVKLISEMKQLISLNIRSNRISNEGTKLI 367
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
+ + L LN+ +I D ++ + L LD+ +I GA + K L SL I
Sbjct: 368 SEMRQLTLLNISNNEIGDEETKLISEMKQLKSLDISYNQIGIEGAKLISEMKQLTSLNIA 427
Query: 405 GGGLTDAGVKHIKDLSSLTLLNL 427
+ G K I ++ LT + L
Sbjct: 428 DNRIGGEGAKLISEMKQLTSITL 450
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 93/407 (22%), Positives = 176/407 (43%), Gaps = 39/407 (9%)
Query: 6 ISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPG--VNDKWMDVI---------AS 54
IS+Q FN + LT + F +Q Q+ VN + D + S
Sbjct: 70 ISKQFFNVIKERSKLTIQFKKKFTKKRVQLFLKSQFMNCIVNVTYSDWLLDSFEEAKFIS 129
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
+ L S+ +SG+ + D + + L SLD + + I D G ++L + L SL+
Sbjct: 130 KMKQLTSLSISGNGIGDEEAKLISEMKQLTSLDISANL-IGDEGAKYLSEMKQLISLNIG 188
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+N +G K + + L LD+ ++++ CI +
Sbjct: 189 KNE--IDEGAKYISEMKQLASLDISYT-----------------QVDVEGAKCIRE---- 225
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+ L SL I +++ G+ + +++LT LN+ + +S + L LN
Sbjct: 226 ----MRQLTSLNICGNRIGIEGVKLISEMRQLTSLNIGESDIGIEGTKLISEMKQLTSLN 281
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
++ + D+G + S++ L LN+ N I ++ + + L SLN+ + IG EG+
Sbjct: 282 ISNNLIGDEGAKLISEMKQLISLNIRANRIVNQGAKFISEMRQLRSLNISNNRIGIEGVK 341
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
++ + L L + ++ + G + +S + L +N+S I D + ++ + LKSL+
Sbjct: 342 LISEMKQLISLNIRSNRISNEGTKLISEMRQLTLLNISNNEIGDEETKLISEMKQLKSLD 401
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
+ QI G ++ + LT L++ RI GA + K L S+
Sbjct: 402 ISYNQIGIEGAKLISEMKQLTSLNIADNRIGGEGAKLISEMKQLTSI 448
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 143/304 (47%), Gaps = 34/304 (11%)
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
++ +++LT L++ G + +S + L L+++ + D+G + S++ L LN
Sbjct: 127 FISKMKQLTSLSISGNGIGDEEAKLISEMKQLTSLDISANLIGDEGAKYLSEMKQLISLN 186
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
+G NEI DE ++ + L SL++ + EG + + L L + ++G G++
Sbjct: 187 IGKNEI-DEGAKYISEMKQLASLDISYTQVDVEGAKCIREMRQLTSLNICGNRIGIEGVK 245
Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
+S + L S+N+ + I + ++ + L SLN+ I D G ++ + L L+
Sbjct: 246 LISEMRQLTSLNIGESDIGIEGTKLISEMKQLTSLNISNNLIGDEGAKLISEMKQLISLN 305
Query: 379 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 438
+ RI + GA ++ + LRSL I + GVK
Sbjct: 306 IRANRIVNQGAKFISEMRQLRSLNISNNRIGIEGVK------------------------ 341
Query: 439 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL-------ESCKVTANDIKRLQS 491
LIS + L+SLN+ ++RI++ G + + ++ L L + E K+ + ++K+L+S
Sbjct: 342 -LISEMKQLISLNIRSNRISNEGTKLISEMRQLTLLNISNNEIGDEETKLIS-EMKQLKS 399
Query: 492 RDLP 495
D+
Sbjct: 400 LDIS 403
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 121/237 (51%), Gaps = 3/237 (1%)
Query: 247 KF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
KF SK+ L L++ N I DE + + L SL++ + IGDEG L+ + L L
Sbjct: 126 KFISKMKQLTSLSISGNGIGDEEAKLISEMKQLTSLDISANLIGDEGAKYLSEMKQLISL 185
Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
+ ++ G +++S + L S+++S+T + + + + L SLN+ +I G+
Sbjct: 186 NIGKNEI-DEGAKYISEMKQLASLDISYTQVDVEGAKCIREMRQLTSLNICGNRIGIEGV 244
Query: 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
++ + LT L++ + I G + K L SL I + D G K I ++ L L
Sbjct: 245 KLISEMRQLTSLNIGESDIGIEGTKLISEMKQLTSLNISNNLIGDEGAKLISEMKQLISL 304
Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
N+ N + ++ + IS + L SLN+SN+RI G++ + +K L SL + S +++
Sbjct: 305 NIRAN-RIVNQGAKFISEMRQLRSLNISNNRIGIEGVKLISEMKQLISLNIRSNRIS 360
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/313 (25%), Positives = 149/313 (47%), Gaps = 29/313 (9%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-----------------------KD 79
G+ D+ +I S+ L S+D+S + + D G +L +
Sbjct: 143 GIGDEEAKLI-SEMKQLTSLDISANLIGDEGAKYLSEMKQLISLNIGKNEIDEGAKYISE 201
Query: 80 CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL- 138
L SLD ++ Q+ G + +R + LTSL+ N I +G+K + + L L++
Sbjct: 202 MKQLASLDISYT-QVDVEGAKCIREMRQLTSLNI-CGNRIGIEGVKLISEMRQLTSLNIG 259
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
E I G + + + +L SLNI N I D K +S + L SL I +++ + G
Sbjct: 260 ESDIGIEGTKL-ISEMKQLTSLNIS-NNLIGDEGAKLISEMKQLISLNIRANRIVNQGAK 317
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
++ +++L LN+ + + +S + L LN+ ++S++G + S++ L +LN
Sbjct: 318 FISEMRQLRSLNISNNRIGIEGVKLISEMKQLISLNIRSNRISNEGTKLISEMRQLTLLN 377
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
+ NEI DE + + L+SL++ IG EG ++ + L L ++D ++G G +
Sbjct: 378 ISNNEIGDEETKLISEMKQLKSLDISYNQIGIEGAKLISEMKQLTSLNIADNRIGGEGAK 437
Query: 319 HLSGLTNLESINL 331
+S + L SI L
Sbjct: 438 LISEMKQLTSITL 450
>gi|320164611|gb|EFW41510.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 853
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 126/439 (28%), Positives = 182/439 (41%), Gaps = 51/439 (11%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+ GL+ LT LS N IT+ + AFAGL L +LDL
Sbjct: 69 QITGIAPSAFTGLTALTVLSLSYNQ-ITSIPVSAFAGLDALTRLDLSSNLITSISASAFP 127
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS------------------------ 188
L L LN++ N IT +GLT L+ L +S
Sbjct: 128 SLTALTELNLQG-NLITSIPASLFTGLTALRWLPLSNNQITSIAANAFNGLSAVTLIYLQ 186
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+++TD A GL LT L L G +T+ + + L SL L+L ++++ F
Sbjct: 187 TNQITDLSPATFTGLAALTELYLMGNQITSIHASTFAGLTSLENLDLQDNKITEVPASAF 246
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
+ + +L L L N+IT+ GLT LE LNL I + L L+ L L
Sbjct: 247 TDLSALTGLTLQDNQITEIPASAFAGLTVLEILNLQGNQITNIPETVFADLTALETLNLQ 306
Query: 309 DTQVGSSGLRHLSGLTNLESINLS-----------FTG-------------ISDGSLRKL 344
D Q+ S + LT L S++L FTG I+D S
Sbjct: 307 DNQITSIPASAFADLTALRSLDLQDNNITSIPASVFTGLSALNELKLHTNKITDLSASVF 366
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
A L++L L L + QIT+ A T LT LT LDL +IT + LR L +
Sbjct: 367 ASLTALAVLELQSNQITEISANAFTGLTALTKLDLSSCQITSFSVDAFTSLTALRDLYLH 426
Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
+T L++L +L L+ N +T +GLT L +L +S + ITS
Sbjct: 427 FNQITSIPASAFTGLTALYVLILAYN-QITSLPTNTFTGLTALNTLTLSFNPITSISANT 485
Query: 465 LKPLKNLRSLTLESCKVTA 483
L +L L L + ++T+
Sbjct: 486 FTDLTSLFFLILNNNQITS 504
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 105/384 (27%), Positives = 165/384 (42%), Gaps = 35/384 (9%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
E T I G+ +++L S N IT +GLT L L +S +++T ++
Sbjct: 47 ETLTTIPTGIPVDTTMLRLSS------NQITGIAPSAFTGLTALTVLSLSYNQITSIPVS 100
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
GL LT L+L +T+ + +L +L LNL ++ F+ + +L+ L
Sbjct: 101 AFAGLDALTRLDLSSNLITSISASAFPSLTALTELNLQGNLITSIPASLFTGLTALRWLP 160
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
L N+IT GL+ + + L + I D TGL L L L Q+ S
Sbjct: 161 LSNNQITSIAANAFNGLSAVTLIYLQTNQITDLSPATFTGLAALTELYLMGNQITSIHAS 220
Query: 319 HLSGLTNLESINL-----------------SFTG-------ISDGSLRKLAGLSSLKSLN 354
+GLT+LE+++L + TG I++ AGL+ L+ LN
Sbjct: 221 TFAGLTSLENLDLQDNKITEVPASAFTDLSALTGLTLQDNQITEIPASAFAGLTVLEILN 280
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
L QIT+ LT L L+L +IT A+ + LRSL++ +T
Sbjct: 281 LQGNQITNIPETVFADLTALETLNLQDNQITSIPASAFADLTALRSLDLQDNNITSIPAS 340
Query: 415 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
LS+L L L N +TD + + + LT L L + +++IT L L L
Sbjct: 341 VFTGLSALNELKLHTN-KITDLSASVFASLTALAVLELQSNQITEISANAFTGLTALTKL 399
Query: 475 TLESCKVTANDIKRLQS----RDL 494
L SC++T+ + S RDL
Sbjct: 400 DLSSCQITSFSVDAFTSLTALRDL 423
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 105/364 (28%), Positives = 152/364 (41%), Gaps = 9/364 (2%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHG-GLV 149
QI+D GL+ LT L + N IT+ FAGL +L LDL+ + T +
Sbjct: 189 QITDLSPATFTGLAALTEL-YLMGNQITSIHASTFAGLTSLENLDLQDNKITEVPASAFT 247
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
+L L L + N IT+ +GLT L+ L + +++T+ L L L
Sbjct: 248 DLSALTGLTLQD----NQITEIPASAFAGLTVLEILNLQGNQITNIPETVFADLTALETL 303
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
NL+ +T+ + + L +L L+L ++ F+ + +L L L N+ITD
Sbjct: 304 NLQDNQITSIPASAFADLTALRSLDLQDNNITSIPASVFTGLSALNELKLHTNKITDLSA 363
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
LT L L L S I + TGL L L+LS Q+ S + + LT L +
Sbjct: 364 SVFASLTALAVLELQSNQITEISANAFTGLTALTKLDLSSCQITSFSVDAFTSLTALRDL 423
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
L F I+ GL++L L L QIT T LT L L L IT A
Sbjct: 424 YLHFNQITSIPASAFTGLTALYVLILAYNQITSLPTNTFTGLTALNTLTLSFNPITSISA 483
Query: 390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 449
+ +L L + +T L L L LS N T L GL +S
Sbjct: 484 NTFTDLTSLFFLILNNNQITSISANAFAGLPGLKYLVLSDN-PFTTLPPGLFQGLPNGLS 542
Query: 450 LNVS 453
L++S
Sbjct: 543 LSLS 546
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 103/354 (29%), Positives = 153/354 (43%), Gaps = 13/354 (3%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ---ISDGGLEHLRGLSNLTSLSF 113
++L + L G+ +T IH + L SL+ N +Q I++ LS LT L+
Sbjct: 202 AALTELYLMGNQITS---IHASTFAGLTSLE-NLDLQDNKITEVPASAFTDLSALTGLTL 257
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
+ +N IT AFAGL L L+L+ + T I + L LE+LN++ N IT
Sbjct: 258 Q-DNQITEIPASAFAGLTVLEILNLQGNQITNIPETV--FADLTALETLNLQ-DNQITSI 313
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
+ LT L+SL + + +T + GL L L L +T ++L +L
Sbjct: 314 PASAFADLTALRSLDLQDNNITSIPASVFTGLSALNELKLHTNKITDLSASVFASLTALA 373
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
L L Q+++ F+ + +L L+L +IT + LT L L L I
Sbjct: 374 VLELQSNQITEISANAFTGLTALTKLDLSSCQITSFSVDAFTSLTALRDLYLHFNQITSI 433
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
TGL L L L+ Q+ S +GLT L ++ LSF I+ S L+SL
Sbjct: 434 PASAFTGLTALYVLILAYNQITSLPTNTFTGLTALNTLTLSFNPITSISANTFTDLTSLF 493
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
L L+ QIT A L GL +L L T + N SL + G
Sbjct: 494 FLILNNNQITSISANAFAGLPGLKYLVLSDNPFTTLPPGLFQGLPNGLSLSLSG 547
>gi|158336627|ref|YP_001517801.1| internalin A protein [Acaryochloris marina MBIC11017]
gi|158306868|gb|ABW28485.1| internalin A protein [Acaryochloris marina MBIC11017]
Length = 627
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 161/543 (29%), Positives = 250/543 (46%), Gaps = 98/543 (18%)
Query: 23 VSLEAFRDCALQDLCLGQYPGVNDKWM-DVIASQGSSLLS------VDLSGSDVTDSGLI 75
+SL+ L D + QYP ++ ++ D+++ + S + LSG DVT + +
Sbjct: 55 LSLQGVDGHELVDASIEQYPHLSALYLFDIVSPEIVPFASLPGLSTIALSGQDVTAASYL 114
Query: 76 H--------------------LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
L D NL LD + QI+D L ++ L LTSL
Sbjct: 115 QPTTNLTTVYLKTTNISDYSFLSDLKNLTHLDLSNN-QIAD--LSFIQDLKQLTSLGLAS 171
Query: 116 NNAITAQGMK----------------AFAGLINLVKL-DLERCTRIHGGLVNLKGLMKLE 158
N + G+K ++ L+NL +L L R L L+ L L
Sbjct: 172 NKIVDISGLKDLTKLNTLNLRSNAIDDYSVLLNLKELRQLTVSVREATDLAFLQDLKDLT 231
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
L++ + + I SD+ L L L L + +++ S IA L LQ+LT L+L ++
Sbjct: 232 HLDLSYNHWI--SDISVLRNLPKLTHLDLGSNQI--SNIAVLLDLQQLTHLSLSSNQISD 287
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
+ L L L L+++ +++D + L L++ NE++D + L+ LT L
Sbjct: 288 VSV--LQTLQGLERLDVSANEIADIAI--LQNLQGLTHLDISSNEVSDISV--LQDLTTL 341
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
LN+ S I D + L GL L L++SD Q+ S + L GL +L S+NLS+ +SD
Sbjct: 342 TQLNVSSNEIIDYSV--LQGLTQLTSLDVSDNQM--SEISDLQGLHSLTSLNLSYNQLSD 397
Query: 339 GS----LRKLAGLS----------------SLKSLNLDARQITDTGLAALTSLTGLTHLD 378
S L++LA L+ L +LNL QITD L+ L L GL LD
Sbjct: 398 ISVLQDLKQLATLNLSYNPVSDIAVLQNFKDLTTLNLSFTQITD--LSHLQDLKGLISLD 455
Query: 379 LFGARITDSGAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTLLNLSQNCNLTDKT 437
L +ITD A L++ + L L + L+D A ++ +K L S LNLS N L
Sbjct: 456 LHSNQITDISA--LQDLEGLYRLNVSDNQLSDIAALRKLKGLFS---LNLSINQILDIAA 510
Query: 438 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 497
L+ LT L SLNVS+++++ + L+ L L SL L + ++ DI LQ ++P L
Sbjct: 511 LQ---DLTRLTSLNVSHNQLSDISV--LQGLTRLNSLDLGANQIA--DISVLQ--NIPGL 561
Query: 498 VSF 500
S
Sbjct: 562 FSL 564
Score = 39.3 bits (90), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 105/239 (43%), Gaps = 33/239 (13%)
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
FN+ D+ HL+ N +LN + +G ++L G+ + ++ S Q HL
Sbjct: 26 FNQSLDDTYHHLQLQPNAYALNDEHQIVG----LSLQGVDGHELVDASIEQYP-----HL 76
Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
S L I + A L L ++ L + +T + L T LT + L
Sbjct: 77 SALY--------LFDIVSPEIVPFASLPGLSTIALSGQDVT--AASYLQPTTNLTTVYLK 126
Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
I+D ++L + KNL L++ + D + I+DL LT L L+ N K ++
Sbjct: 127 TTNISD--YSFLSDLKNLTHLDLSNNQIAD--LSFIQDLKQLTSLGLASN-----KIVD- 176
Query: 441 ISGLTGLVSLNVSNSRITSA-GLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNL 497
ISGL L LN N R + L LK LR LT+ + T D+ LQ +DL +L
Sbjct: 177 ISGLKDLTKLNTLNLRSNAIDDYSVLLNLKELRQLTVSVREAT--DLAFLQDLKDLTHL 233
>gi|301126468|ref|XP_002909849.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262101999|gb|EEY60051.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 427
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 175/336 (52%), Gaps = 15/336 (4%)
Query: 55 QGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSN-LTSL 111
Q L V+L+G S +TD + L + S L S+ C Q++D ++ L SN LTS+
Sbjct: 84 QFPHLKEVNLTGCSSLTDESVEQLANLSGLTSVALKGCYQVTDKSIKLLTESQSNSLTSV 143
Query: 112 SFRRNNAITAQGMKAFAG-LINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN--C 167
+ ++ +G+ A A L L L+L C+++ G+ L L L++LN+ +CN
Sbjct: 144 NLGYCKVVSDEGITAIASNLSKLNYLNLRGCSQVGDNGIRALARLKNLQTLNLWYCNQGA 203
Query: 168 ITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLS 225
+TD + L+ +T+L SL +S CS++TD GI+ L L KL L + VT +L+
Sbjct: 204 LTDGGISALAEVTSLTSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVGEVTDQGFLALA 263
Query: 226 ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNL 283
L +L L++ C ++D G E L NL + +EI D H++ LT + LN
Sbjct: 264 PLVNLVTLDVAGCYNITDAGTEVLVNFPKLASCNLWYCSEIGDATFQHMESLTKMRFLNF 323
Query: 284 DSCG-IGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLSGLTNLESINL-SFTGISDGS 340
CG + D GL ++ L NL L++ S V GL LS L L+S+ L +GI D
Sbjct: 324 MKCGKVTDRGLRSIAKLRNLTSLDMVSCFNVTDEGLNELSKLNRLKSLYLGGCSGIRDEG 383
Query: 341 LRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLT 375
+ L+ LSSL L+L + RQ+ + L + TG++
Sbjct: 384 IAALSHLSSLVILDLSNCRQVGNKALLGIDDGTGVS 419
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 103/312 (33%), Positives = 162/312 (51%), Gaps = 15/312 (4%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIA-SQGSSLLSVDLSGSDV-TDSGLIH 76
LT+ S+E + + L + L V DK + ++ SQ +SL SV+L V +D G+
Sbjct: 99 LTDESVEQLANLSGLTSVALKGCYQVTDKSIKLLTESQSNSLTSVNLGYCKVVSDEGITA 158
Query: 77 LK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN--AITAQGMKAFAGLINL 133
+ + S L L+ C Q+ D G+ L L NL +L+ N A+T G+ A A + +L
Sbjct: 159 IASNLSKLNYLNLRGCSQVGDNGIRALARLKNLQTLNLWYCNQGALTDGGISALAEVTSL 218
Query: 134 VKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSK 191
L+L C+++ G+ +L L+KL L I +TD L+ L NL +L ++ C
Sbjct: 219 TSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVGEVTDQGFLALAPLVNLVTLDVAGCYN 278
Query: 192 VTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFS 249
+TD+G L KL NL C + A + +L + +LN +C +++D G +
Sbjct: 279 ITDAGTEVLVNFPKLASCNLWYCSEIGDATFQHMESLTKMRFLNFMKCGKVTDRGLRSIA 338
Query: 250 KIGSLKVLNLG--FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLE 306
K+ +L L++ FN +TDE L L L L+SL L C GI DEG+ L+ L +L L+
Sbjct: 339 KLRNLTSLDMVSCFN-VTDEGLNELSKLNRLKSLYLGGCSGIRDEGIAALSHLSSLVILD 397
Query: 307 LSD-TQVGSSGL 317
LS+ QVG+ L
Sbjct: 398 LSNCRQVGNKAL 409
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 172/341 (50%), Gaps = 47/341 (13%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQK--LTLLNLEG 213
L+ +N+ C+ +TD ++ L+ L+ L S+ + C +VTD I L Q LT +NL
Sbjct: 88 LKEVNLTGCSSLTDESVEQLANLSGLTSVALKGCYQVTDKSIKLLTESQSNSLTSVNLGY 147
Query: 214 CPVTAACLDSLSALGS----LFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF---NEIT 265
C V + + ++A+ S L YLNL C Q+ D+G +++ +L+ LNL + +T
Sbjct: 148 CKVVSD--EGITAIASNLSKLNYLNLRGCSQVGDNGIRALARLKNLQTLNLWYCNQGALT 205
Query: 266 DECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGL 323
D + L +T+L SLNL +C + DEG+ +L+ L L+ LE+++ +V G L+ L
Sbjct: 206 DGGISALAEVTSLTSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVGEVTDQGFLALAPL 265
Query: 324 TNL-------------------------ESINLSF-TGISDGSLRKLAGLSSLKSLN-LD 356
NL S NL + + I D + + + L+ ++ LN +
Sbjct: 266 VNLVTLDVAGCYNITDAGTEVLVNFPKLASCNLWYCSEIGDATFQHMESLTKMRFLNFMK 325
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVK 414
++TD GL ++ L LT LD+ +TD G L L+SL + G G+ D G+
Sbjct: 326 CGKVTDRGLRSIAKLRNLTSLDMVSCFNVTDEGLNELSKLNRLKSLYLGGCSGIRDEGIA 385
Query: 415 HIKDLSSLTLLNLSQNCNLTDKTLELI---SGLTGLVSLNV 452
+ LSSL +L+LS + +K L I +G++G V+ V
Sbjct: 386 ALSHLSSLVILDLSNCRQVGNKALLGIDDGTGVSGAVAHQV 426
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 100/322 (31%), Positives = 159/322 (49%), Gaps = 16/322 (4%)
Query: 179 LTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSL--SALGSLFYLN 234
+LK + ++ CS +TD + L L LT + L+GC VT + L S SL +N
Sbjct: 85 FPHLKEVNLTGCSSLTDESVEQLANLSGLTSVALKGCYQVTDKSIKLLTESQSNSLTSVN 144
Query: 235 LNRCQL-SDDGCEKF-SKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIG-- 289
L C++ SD+G S + L LNL G +++ D + L L NL++LNL C G
Sbjct: 145 LGYCKVVSDEGITAIASNLSKLNYLNLRGCSQVGDNGIRALARLKNLQTLNLWYCNQGAL 204
Query: 290 -DEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAG 346
D G+ L + +L L LS+ +Q+ G+ LS L L + ++ G ++D LA
Sbjct: 205 TDGGISALAEVTSLTSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVGEVTDQGFLALAP 264
Query: 347 LSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEIC 404
L +L +L++ ITD G L + L +L + + I D+ ++ + +R L
Sbjct: 265 LVNLVTLDVAGCYNITDAGTEVLVNFPKLASCNLWYCSEIGDATFQHMESLTKMRFLNFM 324
Query: 405 G-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGL 462
G +TD G++ I L +LT L++ N+TD+ L +S L L SL + S I G+
Sbjct: 325 KCGKVTDRGLRSIAKLRNLTSLDMVSCFNVTDEGLNELSKLNRLKSLYLGGCSGIRDEGI 384
Query: 463 RHLKPLKNLRSLTLESCKVTAN 484
L L +L L L +C+ N
Sbjct: 385 AALSHLSSLVILDLSNCRQVGN 406
>gi|325106627|ref|YP_004267695.1| hypothetical protein Plabr_0042 [Planctomyces brasiliensis DSM
5305]
gi|324966895|gb|ADY57673.1| leucine-rich repeat-containing protein [Planctomyces brasiliensis
DSM 5305]
Length = 526
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 115/422 (27%), Positives = 182/422 (43%), Gaps = 66/422 (15%)
Query: 55 QGSSLLSVDLSGSD------------------------VTDSGLIHLKDCSNLQSLDFNF 90
Q SL +DLSG+ VTD+GL ++K L+S+D N
Sbjct: 94 QLRSLQELDLSGTSLDDIGMEKLSKLEQLRTFAIAKTRVTDNGLRYVKAFRFLKSIDLNQ 153
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
++S+ GL HL GL +L ++ RR +++ +K L+ L KLDL H GL
Sbjct: 154 N-KLSEAGLCHLEGLVSLREVNLRR-SSVNGAALKWLQRLVLLEKLDLRNTNFTHHGLSF 211
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
L +L SL + N I D + PL L+SL +S + ++D + L L +L L
Sbjct: 212 LTYFRRLRSLKLG-GNRIEDDGLFPLLQFPRLESLDLSGTPISDQAMKTLAQLPRLKRLY 270
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-------------------I 251
+ G V+ L L+++ +L L++ + ++ G ++ + I
Sbjct: 271 VPGTAVSDEGLQLLTSVSTLIALDVRKTAVTPSGVQQLEQHSPGLKIKSDAADLPSSHVI 330
Query: 252 GSLKVLNLGFNEIT---------------DECLVH----LKGLTNLESLNLDSCGIGDEG 292
S VL + +T +H L+ ++L+SL L+ + E
Sbjct: 331 RSRDVLQMHGCHLTLSRSGDVIACQAGEDASPPIHWFSALESFSSLKSLELNRLALDGEQ 390
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
L L + L+ L L L L L L ++L T +SD SL+ L L SL +
Sbjct: 391 LQFLKNMSQLQSLALKQCTFPPEALSVLKSLNRLAWLDLRDTPVSDESLQALGELPSLSN 450
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
L L +T TGL +L+S L L + +I D L FKNL+ L+I G +T+
Sbjct: 451 LCLSRTGVTATGLESLSSAPLLRDLVIKECGQIGDPAVLALEKFKNLKHLDIRGTNITEQ 510
Query: 412 GV 413
G
Sbjct: 511 GF 512
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 135/283 (47%), Gaps = 1/283 (0%)
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+L +S + S + + L L+L CP + L +L L C + D
Sbjct: 28 ALDLSAVRWDQSPEDFPALPENLQELDLTNCPCGSKILAQPEFQETLLKLKCQNCDIDFD 87
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
E ++ SL+ L+L + D + L L L + + + D GL + LK
Sbjct: 88 TLELIGQLRSLQELDLSGTSLDDIGMEKLSKLEQLRTFAIAKTRVTDNGLRYVKAFRFLK 147
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
++L+ ++ +GL HL GL +L +NL + ++ +L+ L L L+ L+L T
Sbjct: 148 SIDLNQNKLSEAGLCHLEGLVSLREVNLRRSSVNGAALKWLQRLVLLEKLDLRNTNFTHH 207
Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
GL+ LT L L L G RI D G L F L SL++ G ++D +K + L L
Sbjct: 208 GLSFLTYFRRLRSLKLGGNRIEDDGLFPLLQFPRLESLDLSGTPISDQAMKTLAQLPRLK 267
Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 466
L + ++D+ L+L++ ++ L++L+V + +T +G++ L+
Sbjct: 268 RLYVP-GTAVSDEGLQLLTSVSTLIALDVRKTAVTPSGVQQLE 309
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 107/385 (27%), Positives = 173/385 (44%), Gaps = 17/385 (4%)
Query: 122 QGMKAFAGLI-NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG-L 179
Q + F L NL +LDL C G + + + L +K NC D D L G L
Sbjct: 38 QSPEDFPALPENLQELDLTNCP--CGSKILAQPEFQETLLKLKCQNCDIDFDTLELIGQL 95
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
+L+ L +S + + D G+ L L++L + VT L + A L ++LN+ +
Sbjct: 96 RSLQELDLSGTSLDDIGMEKLSKLEQLRTFAIAKTRVTDNGLRYVKAFRFLKSIDLNQNK 155
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
LS+ G + SL+ +NL + + L L+ L LE L+L + GL LT
Sbjct: 156 LSEAGLCHLEGLVSLREVNLRRSSVNGAALKWLQRLVLLEKLDLRNTNFTHHGLSFLTYF 215
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
L+ L+L ++ GL L LES++LS T ISD +++ LA L LK L +
Sbjct: 216 RRLRSLKLGGNRIEDDGLFPLLQFPRLESLDLSGTPISDQAMKTLAQLPRLKRLYVPGTA 275
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
++D GL LTS++ L LD+ +T SG L ++ L + V +D+
Sbjct: 276 VSDEGLQLLTSVSTLIALDVRKTAVTPSGVQQLEQHSPGLKIKSDAADLPSSHVIRSRDV 335
Query: 420 SSLT--LLNLSQNCNL--------TDKTLELISGL---TGLVSLNVSNSRITSAGLRHLK 466
+ L LS++ ++ + S L + L SL ++ + L+ LK
Sbjct: 336 LQMHGCHLTLSRSGDVIACQAGEDASPPIHWFSALESFSSLKSLELNRLALDGEQLQFLK 395
Query: 467 PLKNLRSLTLESCKVTANDIKRLQS 491
+ L+SL L+ C + L+S
Sbjct: 396 NMSQLQSLALKQCTFPPEALSVLKS 420
>gi|218196286|gb|EEC78713.1| hypothetical protein OsI_18882 [Oryza sativa Indica Group]
Length = 601
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 119/441 (26%), Positives = 205/441 (46%), Gaps = 48/441 (10%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNL 83
LE F+ +++++ L + V+ +W+ + + L + L+ +V S + L S L
Sbjct: 65 LEVFQH-SVEEIDLSGHIAVDAEWLAYLGA-FRYLRVLKLADCKNVNSSAVWALSGMSTL 122
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143
+ LD + C +ISD G++H+ + +L L + +T G+ A + LINL LDL
Sbjct: 123 KELDLSRCSKISDAGIKHIASIESLEKLHVSQ-TGLTDNGVMAISSLINLRLLDLGGVRF 181
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
L +L+ L +LE L+I W + IT+ L T+L L IS ++VT L L
Sbjct: 182 TDKALRSLQVLTQLEHLDI-WGSEITNEGASVLIAFTSLSFLNISWTRVT-----CLPIL 235
Query: 204 QKLTLLNLEGCPVTAAC-------------LDSLSALG------------SLFYLNLNRC 238
L LN+ C + + C + S ++ G SL YL+++ C
Sbjct: 236 LTLRCLNMSNCTIHSICNGEFQVLIHLEKLVISAASFGNIDEVFSSILPSSLTYLDMSSC 295
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL-TNLESLNLDSCGIGDEGLVNLT 297
S + +L+ L+L ++ I + + ++ + NL L+L + + + L L
Sbjct: 296 --SSSNLYFLGNMRNLEHLDLSYSRIISDAIEYIANIGMNLMFLSLSNSEVTSQALCVLA 353
Query: 298 G-LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG---------SLRKLAGL 347
G + +L L L+ T++ S L ++S + +L +NLS T I SL L L
Sbjct: 354 GTVPSLTTLSLAHTKIDDSALLYISMMPSLRILNLSRTCIKGFMMENSVKVLSLSALEEL 413
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
L+SLNL+ Q+ D + L S L +L L ++D L + NL L CG
Sbjct: 414 KYLESLNLNNTQLMDDVIPPLASFRALKYLFLKSDFLSDPALHALSSASNLIHLGFCGNI 473
Query: 408 LTDAGVKHIKDLSSLTLLNLS 428
L+ G++ ++L +L+LS
Sbjct: 474 LSTTGLRKFVPPATLRMLDLS 494
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 103/424 (24%), Positives = 181/424 (42%), Gaps = 59/424 (13%)
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ A+ + L L L C ++ V L G+ L+ L++ C+ I+D+ +K +
Sbjct: 82 AVDAEWLAYLGAFRYLRVLKLADCKNVNSSAVWALSGMSTLKELDLSRCSKISDAGIKHI 141
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ + +L+ L +S + +TD+G+ + L L LL+L G T L SL L L +L++
Sbjct: 142 ASIESLEKLHVSQTGLTDNGVMAISSLINLRLLDLGGVRFTDKALRSLQVLTQLEHLDIW 201
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEIT-------------DECLVH------LKGLTN 277
+++++G SL LN+ + +T C +H + L +
Sbjct: 202 GSEITNEGASVLIAFTSLSFLNISWTRVTCLPILLTLRCLNMSNCTIHSICNGEFQVLIH 261
Query: 278 LESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
LE L + + G DE ++ +L L++S SS L L + NLE ++LS++
Sbjct: 262 LEKLVISAASFGNIDEVFSSILP-SSLTYLDMSS--CSSSNLYFLGNMRNLEHLDLSYSR 318
Query: 336 ISDGSLRKLAGLS-SLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLR 393
I ++ +A + +L L+L ++T L L ++ LT L L +I DS Y+
Sbjct: 319 IISDAIEYIANIGMNLMFLSLSNSEVTSQALCVLAGTVPSLTTLSLAHTKIDDSALLYIS 378
Query: 394 NFKNLRSLEI---CGGGLTDAGVKHIKDLSSLTLLNLSQNCN------------------ 432
+LR L + C G + LS+L L ++ N
Sbjct: 379 MMPSLRILNLSRTCIKGFMMENSVKVLSLSALEELKYLESLNLNNTQLMDDVIPPLASFR 438
Query: 433 -----------LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
L+D L +S + L+ L + +++ GLR P LR L L C +
Sbjct: 439 ALKYLFLKSDFLSDPALHALSSASNLIHLGFCGNILSTTGLRKFVPPATLRMLDLSGCWI 498
Query: 482 TAND 485
D
Sbjct: 499 LTGD 502
>gi|344174745|emb|CCA86555.1| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
syzygii R24]
Length = 468
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 109/374 (29%), Positives = 172/374 (45%), Gaps = 11/374 (2%)
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC----ITDSDMKPLSGLTNLKSLQIS 188
L +LDL RC G + G+ L L + N I + L+ L SL +S
Sbjct: 76 LKELDLSRCR----GPITAAGIAHLSRLPLVRLNVRDKRIGAEGARRLANHPTLTSLDVS 131
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
++ G L KLT L++ + A +L+A +L L+++ + ++G
Sbjct: 132 NGRIGPEGARALADNTKLTTLSVSHNRIGAEGAKALAASKTLTSLDISENGIGNEGACAL 191
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
+ L LN+ N+I E L L SL++ IGDEG+ L L L +
Sbjct: 192 ATNAKLTTLNVNRNQIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVE 251
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
T+VG+ G+ L+ L S+ + I D R LA +SL +L++++ I+ G AL
Sbjct: 252 RTRVGADGVGALAASKTLTSLRIDSNTIGDAGARALATNTSLTTLHIESNGISPAGAQAL 311
Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
+ T LT L+L I D+GA L SL + GL+DAG + +LT L+
Sbjct: 312 AANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRSGLSDAGATTLAASKTLTTLDAG 371
Query: 429 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
N + D ++ L +L+V ++ I +AG R L L SL L + +VT ++
Sbjct: 372 DNT-IRDAGARALAANRTLTTLDVRSNEIENAGARALAANTRLASLDLRNNRVTKAGVRA 430
Query: 489 -LQSRDLPNL-VSF 500
L +R L +L VSF
Sbjct: 431 LLANRTLSSLGVSF 444
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 108/372 (29%), Positives = 160/372 (43%), Gaps = 39/372 (10%)
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDG--GLEHLRGLSN---LTSLSFRRNNAITAQGMKAF 127
G L + L SLD +S+G G E R L++ LT+LS N I A+G KA
Sbjct: 115 GARRLANHPTLTSLD------VSNGRIGPEGARALADNTKLTTLSVSHNR-IGAEGAKAL 167
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
A L LD+ + G L KL +LN+ N I K L+ L SL I
Sbjct: 168 AASKTLTSLDISENGIGNEGACALATNAKLTTLNVNR-NQIGVEGAKALAAGEALTSLDI 226
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
+ + D G+ L +LT LN+E R ++ DG
Sbjct: 227 GGNDIGDEGVRALAANARLTTLNVE------------------------RTRVGADGVGA 262
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
+ +L L + N I D L T+L +L+++S GI G L L L L
Sbjct: 263 LAASKTLTSLRIDSNTIGDAGARALATNTSLTTLHIESNGISPAGAQALAANTTLTTLNL 322
Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
+G +G + S T L S+++ +G+SD LA +L +L+ I D G A
Sbjct: 323 GYNGIGDAGAQAWSANTTLISLSVRRSGLSDAGATTLAASKTLTTLDAGDNTIRDAGARA 382
Query: 368 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
L + LT LD+ I ++GA L L SL++ +T AGV+ + L++ TL +L
Sbjct: 383 LAANRTLTTLDVRSNEIENAGARALAANTRLASLDLRNNRVTKAGVRAL--LANRTLSSL 440
Query: 428 SQNCNLTDKTLE 439
+ N K +E
Sbjct: 441 GVSFNYCSKQIE 452
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 102/230 (44%), Gaps = 3/230 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
+ G +L S+D+ G+D+ D G+ L + L +L+ ++ G+ L LTSL
Sbjct: 216 AAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVERT-RVGADGVGALAASKTLTSLRI 274
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+N I G +A A +L L +E G L L +LN+ + N I D+
Sbjct: 275 -DSNTIGDAGARALATNTSLTTLHIESNGISPAGAQALAANTTLTTLNLGY-NGIGDAGA 332
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+ S T L SL + S ++D+G L + LT L+ + A +L+A +L L
Sbjct: 333 QAWSANTTLISLSVRRSGLSDAGATTLAASKTLTTLDAGDNTIRDAGARALAANRTLTTL 392
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
++ ++ + G + L L+L N +T + L L SL +
Sbjct: 393 DVRSNEIENAGARALAANTRLASLDLRNNRVTKAGVRALLANRTLSSLGV 442
>gi|51850107|dbj|BAD42395.1| leucine-rich repeat protein [Ralstonia solanacearum]
Length = 538
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 131/491 (26%), Positives = 216/491 (43%), Gaps = 63/491 (12%)
Query: 1 MLPRDISQQI--------FNELVYSRCLTEVSLEA-FRDCALQD-------LCLGQYPGV 44
LP DI ++I L + + ++EA R+ ++D L G YP
Sbjct: 66 QLPPDIFREIARRSDPLTVQRLRVASKPVKAAIEADMRELVIKDRAGLAGVLRAGNYP-- 123
Query: 45 NDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-QISDGGLEHLR 103
+L + L+G+ TD L L ++L++LD + C I+ G+ HL
Sbjct: 124 -------------ALEKLTLAGT-FTDDDLRGLP--ASLKALDLSRCRGPITAAGIAHLS 167
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
L L L+ R N I A+G + A L L++ G L +L +LN+
Sbjct: 168 RLP-LVRLNVR-NKRIGAEGARLLANHPTLTSLNVSNGRIGPEGAQALAANTRLTTLNVS 225
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
N I + K L+ L+SL +S +++ D G L AAC
Sbjct: 226 -GNRIGVAGAKALAANQTLRSLDVSDNRIGDEGAREL-----------------AACTQ- 266
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L L+ NR + DG + +L L +G NEI D ++ L L +LN+
Sbjct: 267 ------LTTLDANRNGIGVDGATALAASRTLTSLAIGGNEIGDAGVLALAANARLTTLNV 320
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
+S G+G +G+ L L L L +G++G L+ T+L +++L + I +
Sbjct: 321 ESTGVGADGVKALAASKTLTWLRLDGNDIGNAGATALAASTSLTTLHLEHSRIGAEGAQA 380
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
LA + L +L+L I D G+ L++ L L + + D+ A L K L +L+I
Sbjct: 381 LAANTKLTTLDLGYNDIGDAGVRTLSANATLVWLSVRRNNLEDASAVSLAAGKTLTTLDI 440
Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
G G+ D G K + +LT L++S N ++ + ++ LVSL++ N+R+ +G R
Sbjct: 441 SGNGIQDQGAKALAANPTLTTLDVSSN-DIRNAGARALAANARLVSLDLRNNRMEESGTR 499
Query: 464 HLKPLKNLRSL 474
L + L SL
Sbjct: 500 ALLANRTLSSL 510
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 32/184 (17%)
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-- 357
+++ L + D + G +G+ LE + L+ T +D LR L +SLK+L+L
Sbjct: 100 ADMRELVIKD-RAGLAGVLRAGNYPALEKLTLAGT-FTDDDLRGLP--ASLKALDLSRCR 155
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
IT G+A L+ L L L++ RI GA L N L SL + G + G +
Sbjct: 156 GPITAAGIAHLSRLP-LVRLNVRNKRIGAEGARLLANHPTLTSLNVSNGRIGPEGAQA-- 212
Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 477
L+ N LT +LNVS +RI AG + L + LRSL +
Sbjct: 213 ---------LAANTRLT--------------TLNVSGNRIGVAGAKALAANQTLRSLDVS 249
Query: 478 SCKV 481
++
Sbjct: 250 DNRI 253
>gi|254416421|ref|ZP_05030174.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
gi|196176859|gb|EDX71870.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
Length = 477
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 147/418 (35%), Positives = 222/418 (53%), Gaps = 48/418 (11%)
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGL 130
G +KD S L L + + + + + LS LTSL+ + NN IT +
Sbjct: 84 GYNQIKDVSPLSGLTNLTVLNLWNNQITDISSLSGLTSLTELYLNNNQITDISPLSGLTN 143
Query: 131 INLVKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
+ ++ L+ + T I GL +L GL+ L IK D+ PLSGLTNL L ++
Sbjct: 144 LTVLNLNNNQITDISPLSGLTSLTGLI-LGGNQIK--------DVSPLSGLTNLTVLNLN 194
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+++TD I+ L GL LT+L L +T + SLS L SL L L+ Q++D
Sbjct: 195 NNQITD--ISPLSGLTSLTVLILYSNQITD--ISSLSGLTSLTVLILSDNQITD--ISPL 248
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
S + +L L L N+ITD + L GLTNL++L L++ I D + L+GL NL L L+
Sbjct: 249 SGLTNLDALYLNNNQITD--ISPLSGLTNLDALYLNNNQITD--ISPLSGLTNLDALYLN 304
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
+ Q+ + + LSGLTNL+++ L+ I+D SL L+GL++L +L L++ QITD ++ L
Sbjct: 305 NNQI--TDISPLSGLTNLDALYLNSNQITDISL--LSGLTNLDALYLNSNQITD--ISPL 358
Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT----- 423
LT L +L L +ITD + L NL L + +TD I LS LT
Sbjct: 359 LELTNLNYLILDNNQITD--ISPLSGLTNLTILILDNNQITD-----ISPLSGLTNLGGL 411
Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
+LN +Q +TD + +SGLT L LN+++++IT + L L NLR L L+ +
Sbjct: 412 ILNSNQ---ITD--VSPLSGLTNLTVLNLNSNQITD--VSPLSGLTNLRRLHLKDNPI 462
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 135/402 (33%), Positives = 208/402 (51%), Gaps = 61/402 (15%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ +GL NL L+L + + ++ L L SL + N +D+ PLSGLTNL
Sbjct: 91 VSPLSGLTNLTVLNLW-----NNQITDISSLSGLTSLTELYLNNNQITDISPLSGLTNLT 145
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEG------CPVTAAC--------------LDS 223
L ++ +++TD I+ L GL LT L L G P++ +
Sbjct: 146 VLNLNNNQITD--ISPLSGLTSLTGLILGGNQIKDVSPLSGLTNLTVLNLNNNQITDISP 203
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
LS L SL L L Q++D S + SL VL L N+ITD + L GLTNL++L L
Sbjct: 204 LSGLTSLTVLILYSNQITD--ISSLSGLTSLTVLILSDNQITD--ISPLSGLTNLDALYL 259
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
++ I D + L+GL NL L L++ Q+ + + LSGLTNL+++ L+ I+D +
Sbjct: 260 NNNQITD--ISPLSGLTNLDALYLNNNQI--TDISPLSGLTNLDALYLNNNQITD--ISP 313
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD---LFGARITDSGAAYLRNFKNLRS 400
L+GL++L +L L++ QITD L L+GLT+LD L +ITD + L NL
Sbjct: 314 LSGLTNLDALYLNSNQITDISL-----LSGLTNLDALYLNSNQITD--ISPLLELTNLNY 366
Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
L + +TD + + L++LT+L L N +TD + +SGLT L L +++++IT
Sbjct: 367 LILDNNQITD--ISPLSGLTNLTILILDNN-QITD--ISPLSGLTNLGGLILNSNQITD- 420
Query: 461 GLRHLKPLKNLRSLTLESCKVT-------ANDIKRLQSRDLP 495
+ L L NL L L S ++T +++RL +D P
Sbjct: 421 -VSPLSGLTNLTVLNLNSNQITDVSPLSGLTNLRRLHLKDNP 461
>gi|343420998|emb|CCD18943.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
Length = 1355
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 152/439 (34%), Positives = 217/439 (49%), Gaps = 67/439 (15%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+DV+ LI SNL++LD + C I+D + L +SNL +L IT +
Sbjct: 62 TDVSPLSLI-----SNLRTLDLSHCTGITD--VSPLSLISNLRTLDLSHCTGIT--DVPP 112
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD---------------- 170
+ LI L KLDL CT I + L L +LE+LN+ +C ITD
Sbjct: 113 LSMLIRLEKLDLSGCTGI-TDVSPLSKLSRLETLNLMYCTGITDVSPLSKLSRLETLNLM 171
Query: 171 -----SDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
+D+ PLS ++NL SL +S C+ +TD + L L +L L+L GC + L
Sbjct: 172 YCTGITDVSPLSLMSNLCSLYLSHCTGITD--VPPLSMLIRLEKLDLSGC-TGITDVSPL 228
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNL 283
S L L LNL C D SK+ L+ LNL + ITD + L L+ LE+LNL
Sbjct: 229 SKLSRLETLNLMYCTGITD-VSPLSKLSRLETLNLMYCTGITD--VSPLSKLSRLETLNL 285
Query: 284 DSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSL 341
C GI D ++L NL L LS G + + LS L LE ++LS TGI+D S
Sbjct: 286 MYCTGITDVSPLSLMS--NLCSLYLSHCT-GITDVSPLSMLIRLEKLDLSGCTGITDVS- 341
Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD----LFGARITDSGAAYLRNFKN 397
L+ LS L++LNL + TG+ ++ L+ L+ L+ ++ ITD + L N
Sbjct: 342 -PLSKLSRLETLNL----MYCTGITDVSPLSKLSRLETLNLMYCTGITD--VSPLSLMSN 394
Query: 398 LRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL-NVSNS 455
L SL + G+TD V + D +L L+LS +TD +S L+ L+ L N+S S
Sbjct: 395 LCSLNLMYCTGITD--VSPLSDFINLRTLDLSFYTGITD-----VSPLSMLIRLENLSLS 447
Query: 456 RITSAGLRHLKPLKNLRSL 474
I AG+ + PL L SL
Sbjct: 448 NI--AGITDVSPLSKLSSL 464
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 147/413 (35%), Positives = 213/413 (51%), Gaps = 40/413 (9%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L D NL++LD +F I+D + L L L +LS IT + + L +L L
Sbjct: 412 LSDFINLRTLDLSFYTGITD--VSPLSMLIRLENLSLSNIAGIT--DVSPLSKLSSLRTL 467
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDS 195
DL CT I + +L L +LE+LN+ +C IT D+ PLS ++NL SL +S C+ +TD
Sbjct: 468 DLSHCTGI-TDVSSLSKLSRLETLNLMYCTGIT--DVSPLSLMSNLCSLYLSHCTGITD- 523
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
+ L L +L L+L GC + LS L L LNL C D SK+ L+
Sbjct: 524 -VPPLSMLIRLEKLDLSGC-TGITDVSPLSKLSRLETLNLMYCTGITD-VSPLSKLSRLE 580
Query: 256 VLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVG 313
LNL + ITD + L ++NL SL L C GI D + L+ L L+ L+LS G
Sbjct: 581 TLNLMYCTGITD--VSPLSLMSNLCSLYLSHCTGITD--VPPLSMLIRLEKLDLSGCT-G 635
Query: 314 SSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSL 371
+ + LS L+ LE++NL + TGI+D S L+ LS L++LNL ITD ++ L+ +
Sbjct: 636 ITDVSPLSKLSRLETLNLMYCTGITDVS--PLSKLSRLETLNLMYCTGITD--VSPLSLI 691
Query: 372 TGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQ 429
+ L LDL ITD + L NL SL + G+TD V + +S+L L LS
Sbjct: 692 SNLRTLDLSHCTGITD--VSPLSLMSNLCSLYLSHCTGITD--VSPLSLMSNLCSLYLSH 747
Query: 430 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL---KNLRSLTLESC 479
+TD + +S L+ L +LN+ + G+ + PL NLR+L L C
Sbjct: 748 CTGITD--VPPLSKLSRLETLNL----MYCTGITDVSPLSLISNLRTLDLSHC 794
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 131/403 (32%), Positives = 204/403 (50%), Gaps = 41/403 (10%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
S L++L+ +C I+D + L +SNL +L IT + + + NL L L
Sbjct: 761 SRLETLNLMYCTGITD--VSPLSLISNLRTLDLSHCTGIT--DVSPLSLMSNLCSLYLSH 816
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAY 199
CT I + L L +LE+LN+ +C IT D+ PLS L+ L++L + C+ +TD ++
Sbjct: 817 CTGI-TDVPPLSKLSRLETLNLMYCTGIT--DVSPLSKLSRLETLNLMYCTGITD--VSP 871
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
L L +L LNL C + LS + +L L L+ C D SK+ L+ LNL
Sbjct: 872 LSKLSRLETLNLMYC-TGITDVSPLSLMSNLCSLYLSHCTGITD-VSPLSKLSRLETLNL 929
Query: 260 GF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
+ ITD + L ++NL +L+L C GI D ++L NL L LS G + +
Sbjct: 930 MYCTGITD--VSPLSLISNLRTLDLSHCTGITDVSPLSLMS--NLCSLYLSHCT-GITDV 984
Query: 318 RHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
LS L+ LE++NL + TGI+D S L+ LS L++LNL + TG+ ++ L+ L+
Sbjct: 985 PPLSKLSRLETLNLMYCTGITDVS--PLSKLSRLETLNL----MYCTGITDVSPLSKLSR 1038
Query: 377 LD----LFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNC 431
L+ ++ ITD + L NL SL + G+TD V + L L L+LS
Sbjct: 1039 LETLNLMYCTGITD--VSPLSLMSNLCSLYLSHCTGITD--VPPLSMLIRLEKLDLSGCT 1094
Query: 432 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
+TD + +S L+ L +LN+ + G+ + PL L L
Sbjct: 1095 GITD--VSPLSKLSRLETLNL----MYCTGITDVSPLSKLSRL 1131
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 109/329 (33%), Positives = 159/329 (48%), Gaps = 52/329 (15%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
S L++L+ +C I+D + L +SNL SL IT + + LI L KLDL
Sbjct: 1037 SRLETLNLMYCTGITD--VSPLSLMSNLCSLYLSHCTGIT--DVPPLSMLIRLEKLDLSG 1092
Query: 141 CTRIH-------------------GGLVNLKGLMKL---ESLNIKWCNCITDSDMKPLSG 178
CT I G+ ++ L KL E+LN+ +C IT D+ PLS
Sbjct: 1093 CTGITDVSPLSKLSRLETLNLMYCTGITDVSPLSKLSRLETLNLMYCTGIT--DVSPLSL 1150
Query: 179 LTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
++NL SL +S C+ +TD + L L +L L+L GC + LS L L LNL
Sbjct: 1151 MSNLCSLYLSHCTGITD--VPPLSMLIRLEKLDLSGC-TGITDVSPLSKLSRLETLNLMY 1207
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLD-SCGIGDEGLVN 295
C D SK+ L+ LNL + ITD + L NL +L+L GI D
Sbjct: 1208 CTGITD-VSPLSKLSRLETLNLMYCTGITD--VSPLSDFINLRTLDLSFYTGITDVS--P 1262
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF----TGISDGSLRKLAGLSSLK 351
L+ L + L LS+ +G+ +S L+ L +N+ + TGI+D S L+ LS L+
Sbjct: 1263 LSMLIRFENLSLSNI----AGITDVSPLSTLIRLNVLYLSGCTGITDVS--PLSKLSRLE 1316
Query: 352 SLNL-DARQITDTGLAALTSLTGLTHLDL 379
+LNL ITD ++ L+ ++ L LDL
Sbjct: 1317 TLNLMYCTGITD--VSPLSLISNLRTLDL 1343
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 122/394 (30%), Positives = 189/394 (47%), Gaps = 75/394 (19%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD--------------------- 170
NL L L CT I + L L +LE+LN+ +C ITD
Sbjct: 3 NLCSLYLSHCTGI-TDVPPLSKLSRLETLNLMYCTGITDVSPLSKLSRLETLNLMYCTGI 61
Query: 171 SDMKPLSGLTNLKSLQIS-CSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
+D+ PLS ++NL++L +S C+ +TD S ++ + L+ L L + G +T LS L
Sbjct: 62 TDVSPLSLISNLRTLDLSHCTGITDVSPLSLISNLRTLDLSHCTG--ITDV--PPLSMLI 117
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC- 286
L L+L+ C D SK+ L+ LNL + ITD + L L+ LE+LNL C
Sbjct: 118 RLEKLDLSGCTGITD-VSPLSKLSRLETLNLMYCTGITD--VSPLSKLSRLETLNLMYCT 174
Query: 287 GIGDEGLVNL-TGLCNL---KCLELSDTQ----------------VGSSGLRHLSGLTNL 326
GI D ++L + LC+L C ++D G + + LS L+ L
Sbjct: 175 GITDVSPLSLMSNLCSLYLSHCTGITDVPPLSMLIRLEKLDLSGCTGITDVSPLSKLSRL 234
Query: 327 ESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD----LFG 381
E++NL + TGI+D S L+ LS L++LNL + TG+ ++ L+ L+ L+ ++
Sbjct: 235 ETLNLMYCTGITDVS--PLSKLSRLETLNL----MYCTGITDVSPLSKLSRLETLNLMYC 288
Query: 382 ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
ITD + L NL SL + G+TD V + L L L+LS +TD +
Sbjct: 289 TGITD--VSPLSLMSNLCSLYLSHCTGITD--VSPLSMLIRLEKLDLSGCTGITD--VSP 342
Query: 441 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
+S L+ L +LN+ + G+ + PL L L
Sbjct: 343 LSKLSRLETLNL----MYCTGITDVSPLSKLSRL 372
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 64/119 (53%), Gaps = 8/119 (6%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L D NL++LD +F I+D + L L +LS IT + + LI L L
Sbjct: 1240 LSDFINLRTLDLSFYTGITD--VSPLSMLIRFENLSLSNIAGIT--DVSPLSTLIRLNVL 1295
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD 194
L CT I + L L +LE+LN+ +C ITD + PLS ++NL++L +S C+ +TD
Sbjct: 1296 YLSGCTGI-TDVSPLSKLSRLETLNLMYCTGITD--VSPLSLISNLRTLDLSHCTGITD 1351
>gi|428163352|gb|EKX32427.1| hypothetical protein GUITHDRAFT_121393 [Guillardia theta CCMP2712]
Length = 1894
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 103/382 (26%), Positives = 176/382 (46%), Gaps = 3/382 (0%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
GL++L +L + +N +T+ F GL +L L L GL L++L
Sbjct: 470 FNGLASLQTL-YLYDNELTSIPATGFNGLASLQTLYLSSNELTSIPETVFAGLASLQTLY 528
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+ N +T +GL +L++L +S +++T GL L L L +T+
Sbjct: 529 LS-GNELTSVPETVFAGLASLQTLYLSGNELTSVPETVFAGLASLQTLYLSSNELTSIPE 587
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
+ L SL YL L+ +L+ F+ + SL+ L L +NE+T GL +L++L
Sbjct: 588 TVFAGLASLQYLYLSSNKLTSVPETVFAGLASLQTLYLSYNELTSVPETVFNGLASLQTL 647
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
L + GL +L+ L L D ++ S +GL +L S++L F ++
Sbjct: 648 YLSYNKLTSVPATVFAGLASLRSLGLYDNKLTSVPATVFAGLASLRSLSLDFNELTSIPE 707
Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
AGL+SL++L L ++T L L +L L ++T ++++L
Sbjct: 708 TVFAGLTSLQTLYLYDNELTSVPETVFNGLASLQYLYLDNNKLTSIPETVFAGLASVQTL 767
Query: 402 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
+ G LT L+SL LN+S N LT + GL L +L++S +++TS
Sbjct: 768 YLSGNELTSVPETVFNGLASLQYLNVSSN-ELTSVPETVFDGLASLQTLDLSYNKLTSVP 826
Query: 462 LRHLKPLKNLRSLTLESCKVTA 483
L +LRSL L++ ++T+
Sbjct: 827 ETVFAGLASLRSLYLDNNELTS 848
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 148/318 (46%), Gaps = 1/318 (0%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N +T +GL +L+ L +S +K+T GL + +L L G +T+ +
Sbjct: 100 NKLTSVPATVFAGLASLQYLYLSSNKLTSIPETVFAGLASIRVLILSGNELTSVPETVFA 159
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L SL YL L+ +L+ F+ + SL+ L L N++T GL +L SL LD+
Sbjct: 160 GLASLQYLYLDNNKLTSVPATVFNGLASLQTLYLSSNKLTSVPETVFNGLASLRSLYLDN 219
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
+ GL +L+ L L D ++ S +GL +L+++ LS+ ++
Sbjct: 220 NELTSVPETVFAGLASLQTLYLYDNELTSIPATVFAGLASLQTLYLSYNKLTSVPETVFD 279
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
GL+SL+SL L ++T L L +L L ++T A +L++L + G
Sbjct: 280 GLASLRSLYLSYNELTSVPETVFDGLASLQYLYLSSNKLTSVPATVFAGLTSLQTLYLSG 339
Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
LT L+SL L LS N LT + +GL L +L +S++++TS
Sbjct: 340 NELTSVPETVFTGLASLQTLYLSSN-KLTSVPETVFNGLASLQTLYLSSNKLTSVPATVF 398
Query: 466 KPLKNLRSLTLESCKVTA 483
L +L+ L L ++T+
Sbjct: 399 AGLASLQYLYLYDNELTS 416
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 104/380 (27%), Positives = 168/380 (44%), Gaps = 3/380 (0%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
GL++L SL + N +T+ F GL +L L L GL L++L +
Sbjct: 280 GLASLRSL-YLSYNELTSVPETVFDGLASLQYLYLSSNKLTSVPATVFAGLTSLQTLYLS 338
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
N +T +GL +L++L +S +K+T GL L L L +T+
Sbjct: 339 -GNELTSVPETVFTGLASLQTLYLSSNKLTSVPETVFNGLASLQTLYLSSNKLTSVPATV 397
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+ L SL YL L +L+ F+ + SL+ L L N++T GL +L++L L
Sbjct: 398 FAGLASLQYLYLYDNELTSIPATVFAGLTSLQSLYLSSNKLTSVPETVFDGLASLQTLYL 457
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
S + GL +L+ L L D ++ S +GL +L+++ LS ++
Sbjct: 458 SSNKLTSVPATVFNGLASLQTLYLYDNELTSIPATGFNGLASLQTLYLSSNELTSIPETV 517
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
AGL+SL++L L ++T L L L L G +T +L++L +
Sbjct: 518 FAGLASLQTLYLSGNELTSVPETVFAGLASLQTLYLSGNELTSVPETVFAGLASLQTLYL 577
Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
LT L+SL L LS N LT + +GL L +L +S + +TS
Sbjct: 578 SSNELTSIPETVFAGLASLQYLYLSSN-KLTSVPETVFAGLASLQTLYLSYNELTSVPET 636
Query: 464 HLKPLKNLRSLTLESCKVTA 483
L +L++L L K+T+
Sbjct: 637 VFNGLASLQTLYLSYNKLTS 656
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 103/382 (26%), Positives = 171/382 (44%), Gaps = 3/382 (0%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
GL++L +L + +N +T+ F GL +L L L+ GL L++L
Sbjct: 182 FNGLASLQTL-YLSSNKLTSVPETVFNGLASLRSLYLDNNELTSVPETVFAGLASLQTLY 240
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+ + N +T +GL +L++L +S +K+T GL L L L +T+
Sbjct: 241 L-YDNELTSIPATVFAGLASLQTLYLSYNKLTSVPETVFDGLASLRSLYLSYNELTSVPE 299
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
L SL YL L+ +L+ F+ + SL+ L L NE+T GL +L++L
Sbjct: 300 TVFDGLASLQYLYLSSNKLTSVPATVFAGLTSLQTLYLSGNELTSVPETVFTGLASLQTL 359
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
L S + GL +L+ L LS ++ S +GL +L+ + L ++
Sbjct: 360 YLSSNKLTSVPETVFNGLASLQTLYLSSNKLTSVPATVFAGLASLQYLYLYDNELTSIPA 419
Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
AGL+SL+SL L + ++T L L L L ++T A +L++L
Sbjct: 420 TVFAGLTSLQSLYLSSNKLTSVPETVFDGLASLQTLYLSSNKLTSVPATVFNGLASLQTL 479
Query: 402 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
+ LT L+SL L LS N LT + +GL L +L +S + +TS
Sbjct: 480 YLYDNELTSIPATGFNGLASLQTLYLSSN-ELTSIPETVFAGLASLQTLYLSGNELTSVP 538
Query: 462 LRHLKPLKNLRSLTLESCKVTA 483
L +L++L L ++T+
Sbjct: 539 ETVFAGLASLQTLYLSGNELTS 560
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 100/380 (26%), Positives = 171/380 (45%), Gaps = 27/380 (7%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
GL++L +L + +N +T+ F GL +L L L GL L+ L +
Sbjct: 352 GLASLQTL-YLSSNKLTSVPETVFNGLASLQTLYLSSNKLTSVPATVFAGLASLQYLYL- 409
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+ N +T +GLT+L+SL +S +K+T V D
Sbjct: 410 YDNELTSIPATVFAGLTSLQSLYLSSNKLTS---------------------VPETVFDG 448
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L++L +L+ L+ +L+ F+ + SL+ L L NE+T GL +L++L L
Sbjct: 449 LASLQTLY---LSSNKLTSVPATVFNGLASLQTLYLYDNELTSIPATGFNGLASLQTLYL 505
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
S + GL +L+ L LS ++ S +GL +L+++ LS ++
Sbjct: 506 SSNELTSIPETVFAGLASLQTLYLSGNELTSVPETVFAGLASLQTLYLSGNELTSVPETV 565
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
AGL+SL++L L + ++T L L +L L ++T +L++L +
Sbjct: 566 FAGLASLQTLYLSSNELTSIPETVFAGLASLQYLYLSSNKLTSVPETVFAGLASLQTLYL 625
Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
LT L+SL L LS N LT + +GL L SL + ++++TS
Sbjct: 626 SYNELTSVPETVFNGLASLQTLYLSYN-KLTSVPATVFAGLASLRSLGLYDNKLTSVPAT 684
Query: 464 HLKPLKNLRSLTLESCKVTA 483
L +LRSL+L+ ++T+
Sbjct: 685 VFAGLASLRSLSLDFNELTS 704
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 127/278 (45%), Gaps = 1/278 (0%)
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
LT + L G +T+ + L SL YL L+ +L+ F+ + S++VL L NE+T
Sbjct: 92 LTEIRLSGNKLTSVPATVFAGLASLQYLYLSSNKLTSIPETVFAGLASIRVLILSGNELT 151
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
GL +L+ L LD+ + GL +L+ L LS ++ S +GL +
Sbjct: 152 SVPETVFAGLASLQYLYLDNNKLTSVPATVFNGLASLQTLYLSSNKLTSVPETVFNGLAS 211
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L S+ L ++ AGL+SL++L L ++T L L L L ++T
Sbjct: 212 LRSLYLDNNELTSVPETVFAGLASLQTLYLYDNELTSIPATVFAGLASLQTLYLSYNKLT 271
Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 445
+LRSL + LT L+SL L LS N LT + +GLT
Sbjct: 272 SVPETVFDGLASLRSLYLSYNELTSVPETVFDGLASLQYLYLSSN-KLTSVPATVFAGLT 330
Query: 446 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 483
L +L +S + +TS L +L++L L S K+T+
Sbjct: 331 SLQTLYLSGNELTSVPETVFTGLASLQTLYLSSNKLTS 368
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 108/392 (27%), Positives = 175/392 (44%), Gaps = 14/392 (3%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLES 159
GL++L L + NN +T+ FAGL ++ L L T + + N GL L+
Sbjct: 734 FNGLASLQYL-YLDNNKLTSIPETVFAGLASVQTLYLSGNELTSVPETVFN--GLASLQY 790
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
LN+ N +T GL +L++L +S +K+T GL L L L+ +T+
Sbjct: 791 LNVS-SNELTSVPETVFDGLASLQTLDLSYNKLTSVPETVFAGLASLRSLYLDNNELTSV 849
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+ L SL+ L+L+ +L+ F L L L N ++ L GL +LE
Sbjct: 850 PETVFAGLDSLWRLDLHSNRLASLALSLFYDCHDLMELYLNNNLLSGLLPGSLDGLVSLE 909
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
+L L S + D L +L L L + ++ S +GL L ++++ ++
Sbjct: 910 ALYLHSNQLADISSDVFAQLSSLTTLTLHNNRLSSLSPGAFAGLARLTTLSIHHNRLTRL 969
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
S GLS+L +L+L +T ALT L + LDL ++ D A L N LR
Sbjct: 970 SPGAFQGLSTLATLDLHDNHLTSLTAGALTGLDAMRALDLSSNKLADLPAQALHNLTGLR 1029
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN---VSNSR 456
+L + LT ++ L+ L L LS N + E+ +GL L SL + ++
Sbjct: 1030 NLSLDDNQLTSLSAGVLEPLAGLEYLWLSHN-----RLAEVPAGLGSLASLRYLLLDHNP 1084
Query: 457 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
+TS + L +LR+L + S A +R
Sbjct: 1085 LTSLDVSLLDNKPDLRALGVNSDAFKALSAQR 1116
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 100/367 (27%), Positives = 163/367 (44%), Gaps = 34/367 (9%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVN 150
Q++D + LS+LT+L+ NN +++ AFAGL L L + R TR+ G
Sbjct: 917 QLADISSDVFAQLSSLTTLTLH-NNRLSSLSPGAFAGLARLTTLSIHHNRLTRLSPG--A 973
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
+GL L +L++ N +T L+GL +++L +S +K+ D L L L L+
Sbjct: 974 FQGLSTLATLDLH-DNHLTSLTAGALTGLDAMRALDLSSNKLADLPAQALHNLTGLRNLS 1032
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L+ +T+ L L L YL L+ +L++ + SL+ L L N +T +
Sbjct: 1033 LDDNQLTSLSAGVLEPLAGLEYLWLSHNRLAEVPA-GLGSLASLRYLLLDHNPLTSLDVS 1091
Query: 271 HLKGLTNLESLNLDS---CGIGDEGLVNLTGLCNLKCLELSDTQVGSSG---LRHLSGLT 324
L +L +L ++S + + L L L + D Q S+ L LS LT
Sbjct: 1092 LLDNKPDLRALGVNSDAFKALSAQRPSVLETLLELWLCKSDDDQDQSAAGELLDKLSQLT 1151
Query: 325 NLESINLSFTGISDGSLRKLAG---------------------LSSLKSLNLDARQITDT 363
L + I G L L+ L SL+SL L +T
Sbjct: 1152 GLYLFGFDQSLIHAGMLSSLSSVRVLWLEDNLLDQLPPGTFDQLPSLQSLYLIHNGLTAV 1211
Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
+AAL++L+GLT L + IT A R+ LR+L++ G ++ + +L ++
Sbjct: 1212 PVAALSNLSGLTELHIVNDGITRVPAGAFRSLSGLRTLDLSGNLISSIEAEAFDNLDNVR 1271
Query: 424 LLNLSQN 430
L+LS N
Sbjct: 1272 QLDLSNN 1278
>gi|290981112|ref|XP_002673275.1| predicted protein [Naegleria gruberi]
gi|284086857|gb|EFC40531.1| predicted protein [Naegleria gruberi]
Length = 461
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 126/465 (27%), Positives = 211/465 (45%), Gaps = 38/465 (8%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L +D++ SD+ + + L NL+ L+ I D GLE L L LT L+ R NN
Sbjct: 4 LKRLDIASSDIGNEQVKILSQFKNLELLNLGDN-HIKDEGLELLSDLKGLTLLNIR-NNR 61
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLS 177
I + +++ + NL L++++ G+ + + L L LN+ C + KP+S
Sbjct: 62 I--ESVESICKMKNLTHLNIKKNRIGDLGIEEIAENLNHLIYLNVSGCGI---TSCKPIS 116
Query: 178 -GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
L LKSL I+ + + G + +++LT L++ + A +S L L L +N
Sbjct: 117 EKLQYLKSLNINRNNLGSKGAQNVAEMKQLTCLSIGNNHIHAKGALYISRLEKLTALCIN 176
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
++ D G E K+ L L++ +N+I + +V +TNL LNL I GLV++
Sbjct: 177 GNRIGDVGAEYIIKMKQLTFLDMQYNQI-ENVMVESSEITNLTYLNLGYNKITTNGLVSI 235
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
T L LK L L L L + +L+ +++S + + + ++ L SL +
Sbjct: 236 TKLDQLKSLYLHYNYYLDPNL--LERMKHLKKLDIS-KNFTQNEFKSICEMTHLTSLIVP 292
Query: 357 ARQITDTGLAALTSLTGLTHLDL-------FGAR-----------------ITDSGAAYL 392
I TG+ ++T L LT LD+ GA I GA ++
Sbjct: 293 RNSINKTGIQSITELKHLTELDIENNEIGTTGAEKISEMKHLLILKIDYNNICSEGARFI 352
Query: 393 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
NL +L I + G K+I +S LT L + + + D+ ++ IS LT L L++
Sbjct: 353 SQLPNLTALSIGANNIRTVGAKYIGQMSQLTELRIYSDYEIGDEGVKAISRLTRLTKLHI 412
Query: 453 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 497
+ +T G + + LKNL L N ++ + R LP L
Sbjct: 413 NGIGMTDEGAKSILALKNLTWLCAYWPNPYGNQVRNML-RKLPAL 456
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 149/327 (45%), Gaps = 31/327 (9%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ +LK L I+ S + + + L + L LLNL + L+ LS L L LN+
Sbjct: 1 MKHLKRLDIASSDIGNEQVKILSQFKNLELLNLGDNHIKDEGLELLSDLKGLTLLNIRNN 60
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITD-------ECLVHL-----------------KG 274
++ + E K+ +L LN+ N I D E L HL +
Sbjct: 61 RI--ESVESICKMKNLTHLNIKKNRIGDLGIEEIAENLNHLIYLNVSGCGITSCKPISEK 118
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
L L+SLN++ +G +G N+ + L CL + + + + G ++S L L ++ ++
Sbjct: 119 LQYLKSLNINRNNLGSKGAQNVAEMKQLTCLSIGNNHIHAKGALYISRLEKLTALCINGN 178
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
I D + + L L++ QI + + + + +T LT+L+L +IT +G +
Sbjct: 179 RIGDVGAEYIIKMKQLTFLDMQYNQIENVMVES-SEITNLTYLNLGYNKITTNGLVSITK 237
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
L+SL + D + ++ + L L++S+ N T + I +T L SL V
Sbjct: 238 LDQLKSLYLHYNYYLDPNL--LERMKHLKKLDISK--NFTQNEFKSICEMTHLTSLIVPR 293
Query: 455 SRITSAGLRHLKPLKNLRSLTLESCKV 481
+ I G++ + LK+L L +E+ ++
Sbjct: 294 NSINKTGIQSITELKHLTELDIENNEI 320
>gi|449019210|dbj|BAM82612.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D]
Length = 2325
Score = 102 bits (253), Expect = 6e-19, Method: Composition-based stats.
Identities = 148/520 (28%), Positives = 230/520 (44%), Gaps = 110/520 (21%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR----RNNAI-TAQGMKAFAGLINLVKLD 137
L+ LD + CI ++D GL L ++ L++ + + AI + +A AGL+ L
Sbjct: 1801 LKHLDLSSCIHLTDEGLGAL--VAALSTPEAKAGDSEDTAIESVATTEASAGLV--APLT 1856
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL--SGLTNLKSLQISCSKVTDS 195
E + G LE+L++ C + D ++PL +L+ + +S +++T +
Sbjct: 1857 TEALLYSSSSNSSSSG--TLETLSVAHCFRLGDRSLRPLLRQHRQSLRVVDLSYTRITGA 1914
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAAC-LDSLSALG--------SLFYLNLNRC-QLSDDG- 244
+ L L +L L+L GC T + D+ + G L +L+L +C QL DG
Sbjct: 1915 VLQELGALPQLQSLSLCGCGETLSVESDAATRFGEELALPGKQLVHLDLGKCAQLVTDGF 1974
Query: 245 ----------------------------CEK--------FSKIGSLKVLNLGFNEITDEC 268
E+ +S +L+ L++ +TD
Sbjct: 1975 LAALAGLASGRRTHHQYNRQQYQQNPAAVERLVHATHGVYSSRDTLRSLSVHGCRLTDRS 2034
Query: 269 LVH-LKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSS-GLRHLSGLTN 325
L H ++ LE L+L C I D GL +L L +L+ L+L+DT V S+ G L+ L
Sbjct: 2035 LSHYVRLFQGLERLDLSQCRLITDAGLEHLQSLKSLRELDLADTNVTSAVGASLLARLRQ 2094
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA------------------- 366
L ++LS+T + + L+ L L+ L LDAR I+D L
Sbjct: 2095 LRRLDLSYTAVQSNITKSLSTLEQLEWLGLDARLISDDALQVEENEASPEPVSSRDVAAP 2154
Query: 367 ALTSLT-------------GLTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAG 412
AL+S T L HLDLFGA ITD G +YL + + SLE+C G LTDA
Sbjct: 2155 ALSSATVAVHLHRRIGLPRHLRHLDLFGAHITDRGMSYLVQACPYVESLEVCSGALTDAA 2214
Query: 413 VKHI-KDLSSLTLLNLSQNCNLTDKTLELISGLTG----------LVSLNVSNSRITSAG 461
++ I + L L LN+SQN ++D L + L L +LN++ + +T G
Sbjct: 2215 LRLIAQHLPYLRALNISQNMRISDAGLREYARLAQVQQDLGQPHLLETLNLAFTAVTWRG 2274
Query: 462 LRHLKP-LKNLRSLTLESCKVTANDIKRLQS--RDLPNLV 498
L L P L LR L + C + +QS R P LV
Sbjct: 2275 LAVLLPTLPYLRLLCVRGCNKDSFSAVSVQSLERMRPGLV 2314
Score = 56.6 bits (135), Expect = 3e-05, Method: Composition-based stats.
Identities = 111/399 (27%), Positives = 174/399 (43%), Gaps = 55/399 (13%)
Query: 61 SVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNN 117
++DLSG S +TD GLI L L+ + C+ I G+ L R S L LS
Sbjct: 1713 TLDLSGCSHITDRGLIGLAPHLRQLKECILDGCLGIWGPGVRALLRLCSKLERLSLAGCR 1772
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
++T + AF GL + V C R G LK L++ C +TD + L
Sbjct: 1773 SLTDE---AFQGLASGVARG--PCQRTSAGRFALK------HLDLSSCIHLTDEGLGAL- 1820
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL-----DSLSALGSLFY 232
+ +L +K DS ++ + P+T L + S+ G+L
Sbjct: 1821 ----VAALSTPEAKAGDSEDTAIESVATTEASAGLVAPLTTEALLYSSSSNSSSSGTLET 1876
Query: 233 LNLNRC-QLSDDGCEKFSKI--GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L++ C +L D + SL+V++L + IT L L L L+SL+L CG G
Sbjct: 1877 LSVAHCFRLGDRSLRPLLRQHRQSLRVVDLSYTRITGAVLQELGALPQLQSLSL--CGCG 1934
Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
+ L + T+ G L +L+ + ++DG L LAGL+S
Sbjct: 1935 E----------TLSVESDAATRFGEELALPGKQLVHLD-LGKCAQLVTDGFLAALAGLAS 1983
Query: 350 -LKSLNLDARQITDTGLAALTSLTGLTH-----------LDLFGARITD-SGAAYLRNFK 396
++ + RQ AA+ L TH L + G R+TD S + Y+R F+
Sbjct: 1984 GRRTHHQYNRQQYQQNPAAVERLVHATHGVYSSRDTLRSLSVHGCRLTDRSLSHYVRLFQ 2043
Query: 397 NLRSLEICGGGL-TDAGVKHIKDLSSLTLLNLSQNCNLT 434
L L++ L TDAG++H++ L SL L+L+ + N+T
Sbjct: 2044 GLERLDLSQCRLITDAGLEHLQSLKSLRELDLA-DTNVT 2081
Score = 42.0 bits (97), Expect = 0.72, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 52 IASQGSSLLSVDLSGSDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110
+ S +L S+ + G +TD L H ++ L+ LD + C I+D GLEHL+ L +L
Sbjct: 2013 VYSSRDTLRSLSVHGCRLTDRSLSHYVRLFQGLERLDLSQCRLITDAGLEHLQSLKSLRE 2072
Query: 111 LSFRRNNAITAQG 123
L N +A G
Sbjct: 2073 LDLADTNVTSAVG 2085
>gi|406833162|ref|ZP_11092756.1| hypothetical protein SpalD1_16026 [Schlesneria paludicola DSM
18645]
Length = 447
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 114/358 (31%), Positives = 174/358 (48%), Gaps = 34/358 (9%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI-AYLKGLQKL 206
LV L L+ L I C + D + LSGL L SL ++ S + DSG+ +K +L
Sbjct: 100 LVLFGKLSDLKKLQIFNCRTLNDEMVAQLSGLKGLTSLALTNSVINDSGVETIVKSFPEL 159
Query: 207 TLLNLEG-CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
T L+L +T + +S LG L L L + Q++D G ++ SK+ L+ L+L
Sbjct: 160 TELDLSSNTNMTNGVVKIISNLGKLQRLTLVQNQINDIGAQRLSKLQELRSLDL------ 213
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
+G N+E+ GD L + GL +L+ + T V SGL +LS
Sbjct: 214 -------RG--NMEA--------GDMTLEVVAGLPHLQSFKHRSTAVNDSGLEYLSQGQA 256
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDLFG-AR 383
LES+ L I+D S LA LS L L + Q G+ AL + GL L L
Sbjct: 257 LESLLLQDFVITDQSGPHLAKLSKLSQLEIFRCQGFGSDGVLALKGM-GLIRLTLRDLPN 315
Query: 384 ITDSGAAYLRNFKNLRSL---EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
+ D + LR L E+ G DAG+KH+ L SL LL++ +TD+T+++
Sbjct: 316 VDDRAMEVFDDLPQLRRLYLHELTSVG--DAGLKHLAGLKSLELLDIWTVPQMTDETVDV 373
Query: 441 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL-ESCKVTANDIKRLQSRDLPNL 497
IS L L L++ + +T + + L +K+L+SLT E+ +TA +K+L +R L
Sbjct: 374 ISQLPNLKDLSIRVTGVTDSAIDKLLTMKSLQSLTFKENGSITAEGLKKLSARKWSKL 431
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 89/335 (26%), Positives = 149/335 (44%), Gaps = 31/335 (9%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
GS++ L+ S+L+ L C ++D + L GL LTSL+ N+ I G++
Sbjct: 92 GSNLQSEDLVLFGKLSDLKKLQIFNCRTLNDEMVAQLSGLKGLTSLALT-NSVINDSGVE 150
Query: 126 AFA-GLINLVKLDLERCTRIHGGLVN-------------------------LKGLMKLES 159
L +LDL T + G+V L L +L S
Sbjct: 151 TIVKSFPELTELDLSSNTNMTNGVVKIISNLGKLQRLTLVQNQINDIGAQRLSKLQELRS 210
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L+++ D ++ ++GL +L+S + + V DSG+ YL Q L L L+ +T
Sbjct: 211 LDLRGNMEAGDMTLEVVAGLPHLQSFKHRSTAVNDSGLEYLSQGQALESLLLQDFVITDQ 270
Query: 220 CLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
L+ L L L + RCQ DG +G +++ + D + L L
Sbjct: 271 SGPHLAKLSKLSQLEIFRCQGFGSDGVLALKGMGLIRLTLRDLPNVDDRAMEVFDDLPQL 330
Query: 279 ESLNLDS-CGIGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLSGLTNLESINLSFTGI 336
L L +GD GL +L GL +L+ L++ + Q+ + +S L NL+ +++ TG+
Sbjct: 331 RRLYLHELTSVGDAGLKHLAGLKSLELLDIWTVPQMTDETVDVISQLPNLKDLSIRVTGV 390
Query: 337 SDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTS 370
+D ++ KL + SL+SL IT GL L++
Sbjct: 391 TDSAIDKLLTMKSLQSLTFKENGSITAEGLKKLSA 425
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 89/188 (47%), Gaps = 8/188 (4%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
VND ++ + SQG +L S+ L +TD HL S L L+ C G+ L
Sbjct: 242 AVNDSGLEYL-SQGQALESLLLQDFVITDQSGPHLAKLSKLSQLEIFRCQGFGSDGVLAL 300
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLN 161
+G+ L L+ R + + M+ F L L +L L T + GL +L GL LE L+
Sbjct: 301 KGM-GLIRLTLRDLPNVDDRAMEVFDDLPQLRRLYLHELTSVGDAGLKHLAGLKSLELLD 359
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL---KGLQKLTLLNLEGCPVTA 218
I +TD + +S L NLK L I + VTDS I L K LQ LT E +TA
Sbjct: 360 IWTVPQMTDETVDVISQLPNLKDLSIRVTGVTDSAIDKLLTMKSLQSLTF--KENGSITA 417
Query: 219 ACLDSLSA 226
L LSA
Sbjct: 418 EGLKKLSA 425
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 138/305 (45%), Gaps = 16/305 (5%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI--QISDGGLEH 101
+ND ++ I L +DLS + +G++ + SNL L + QI+D G +
Sbjct: 144 INDSGVETIVKSFPELTELDLSSNTNMTNGVVKI--ISNLGKLQRLTLVQNQINDIGAQR 201
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESL 160
L L L SL R N ++ AGL +L R T ++ GL L LESL
Sbjct: 202 LSKLQELRSLDLRGNMEAGDMTLEVVAGLPHLQSFK-HRSTAVNDSGLEYLSQGQALESL 260
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK--GLQKLTLLNLEGCPVT 217
++ ITD L+ L+ L L+I C G+ LK GL +LTL +L
Sbjct: 261 LLQDF-VITDQSGPHLAKLSKLSQLEIFRCQGFGSDGVLALKGMGLIRLTLRDLPNVDDR 319
Query: 218 A-ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGL 275
A D L L L+ L + D G + + + SL++L++ ++TDE + + L
Sbjct: 320 AMEVFDDLPQLRRLYLHEL--TSVGDAGLKHLAGLKSLELLDIWTVPQMTDETVDVISQL 377
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFT 334
NL+ L++ G+ D + L + +L+ L + + + GL+ LS ++L +
Sbjct: 378 PNLKDLSIRVTGVTDSAIDKLLTMKSLQSLTFKENGSITAEGLKKLSA-RKWSKLDLGTS 436
Query: 335 GISDG 339
SDG
Sbjct: 437 NQSDG 441
>gi|290978242|ref|XP_002671845.1| predicted protein [Naegleria gruberi]
gi|284085417|gb|EFC39101.1| predicted protein [Naegleria gruberi]
Length = 439
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 158/339 (46%), Gaps = 5/339 (1%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIK 163
L NLT + +N I+ + +K F L +L L + C I G L L +L LNI
Sbjct: 99 LKNLTRIDIS-DNEISDERVKHFGNLTHLTNLVI-NCNDIGVEGAKCLCQLNQLTRLNIG 156
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
N + K +S L NL L I+ + + D G ++ +++LT LNL +
Sbjct: 157 -NNSLETEGAKYISELKNLTKLDIARNCIGDRGAQFITEMKQLTSLNLNRNGIEYLGAKF 215
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+S + L L+++ + +G ++ SK+ L L + N I DE +H+ + L +L++
Sbjct: 216 ISEMYQLTSLDISNNDIGSEGAKQISKLDQLTKLYIYDNNIGDEGAMHISEMKQLTNLDI 275
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
I EG ++ L L L + +G +G +H+S + NL + + I
Sbjct: 276 SRNDIDSEGAKSICELYQLTNLNICSNYIGETGAKHISEMNNLTILEIGSNEIGSEGAYH 335
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
++ + L L + A I + G ++ + LT LD++ I D G ++ K L L++
Sbjct: 336 ISRMHQLTRLMIFANDIGEKGAKHVSEMKQLTKLDIYDNNIGDEGTIHISEMKQLTYLDV 395
Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
+ G ++I+ L+ LT LN+ N + +D ELI
Sbjct: 396 SANNIGHEGAEYIRKLNRLTFLNVHYN-SFSDSESELIE 433
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 118/237 (49%), Gaps = 1/237 (0%)
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
C+ F + +L +++ NEI+DE + H LT+L +L ++ IG EG L L L
Sbjct: 93 CQIFECLKNLTRIDISDNEISDERVKHFGNLTHLTNLVINCNDIGVEGAKCLCQLNQLTR 152
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
L + + + + G +++S L NL ++++ I D + + + L SLNL+ I G
Sbjct: 153 LNIGNNSLETEGAKYISELKNLTKLDIARNCIGDRGAQFITEMKQLTSLNLNRNGIEYLG 212
Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424
++ + LT LD+ I GA + L L I + D G HI ++ LT
Sbjct: 213 AKFISEMYQLTSLDISNNDIGSEGAKQISKLDQLTKLYIYDNNIGDEGAMHISEMKQLTN 272
Query: 425 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
L++S+N ++ + + I L L +LN+ ++ I G +H+ + NL L + S ++
Sbjct: 273 LDISRN-DIDSEGAKSICELYQLTNLNICSNYIGETGAKHISEMNNLTILEIGSNEI 328
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 71/310 (22%), Positives = 132/310 (42%), Gaps = 29/310 (9%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF-NFCIQISDGGLEHLRGLSNLTSLSF 113
Q + L +++ + + G ++ + NL LD CI D G + + + LTSL+
Sbjct: 146 QLNQLTRLNIGNNSLETEGAKYISELKNLTKLDIARNCI--GDRGAQFITEMKQLTSLNL 203
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
R N I G K + + L LD+ N I
Sbjct: 204 NR-NGIEYLGAKFISEMYQLTSLDISN-------------------------NDIGSEGA 237
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S L L L I + + D G ++ +++LT L++ + + S+ L L L
Sbjct: 238 KQISKLDQLTKLYIYDNNIGDEGAMHISEMKQLTNLDISRNDIDSEGAKSICELYQLTNL 297
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
N+ + + G + S++ +L +L +G NEI E H+ + L L + + IG++G
Sbjct: 298 NICSNYIGETGAKHISEMNNLTILEIGSNEIGSEGAYHISRMHQLTRLMIFANDIGEKGA 357
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
+++ + L L++ D +G G H+S + L +++S I + L+ L L
Sbjct: 358 KHVSEMKQLTKLDIYDNNIGDEGTIHISEMKQLTYLDVSANNIGHEGAEYIRKLNRLTFL 417
Query: 354 NLDARQITDT 363
N+ +D+
Sbjct: 418 NVHYNSFSDS 427
Score = 45.4 bits (106), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 91/223 (40%), Gaps = 31/223 (13%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D+S +D+ G + L L + + I D G H+ + LT+L
Sbjct: 217 SEMYQLTSLDISNNDIGSEGAKQISKLDQLTKL-YIYDNNIGDEGAMHISEMKQLTNLDI 275
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--------------------------G 147
RN+ I ++G K+ L L L++ C+ G G
Sbjct: 276 SRND-IDSEGAKSICELYQLTNLNI--CSNYIGETGAKHISEMNNLTILEIGSNEIGSEG 332
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
++ + +L L I + N I + K +S + L L I + + D G ++ +++LT
Sbjct: 333 AYHISRMHQLTRLMI-FANDIGEKGAKHVSEMKQLTKLDIYDNNIGDEGTIHISEMKQLT 391
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
L++ + + + L L +LN++ SD E K
Sbjct: 392 YLDVSANNIGHEGAEYIRKLNRLTFLNVHYNSFSDSESELIEK 434
>gi|168701675|ref|ZP_02733952.1| hypothetical protein GobsU_19277 [Gemmata obscuriglobus UQM 2246]
Length = 407
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 111/191 (58%), Gaps = 8/191 (4%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGI--------AYLKGLQKLTLLNLEGCPVTAA 219
+TD+ +K L+ L L +L +S ++VTD+G+ GL+ LT L+L VT A
Sbjct: 46 VTDTGLKELAALKGLTTLDLSYTEVTDAGVKALAALKALTALGLKGLTTLDLTFTRVTDA 105
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+ +L+AL +L L+L+ ++D+G ++ + +G+L L LG +TD + L L L
Sbjct: 106 GVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGLGGTSVTDAGVKELAALKGLT 165
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
+L+L S G+ D G L+GL L L +S T V +G++ L+ L NL + L+ TG++D
Sbjct: 166 ALDLGSMGVTDAGAKELSGLTGLTALGMSFTGVTDAGVKELAALKNLTHLELAATGVTDA 225
Query: 340 SLRKLAGLSSL 350
+++LA L SL
Sbjct: 226 GVKELAALKSL 236
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 110/203 (54%), Gaps = 14/203 (6%)
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-----------VHLKGLTNLESL 281
++L+ +++D G ++ + + L L+L + E+TD + + LKGLT +L
Sbjct: 39 VSLSFTRVTDTGLKELAALKGLTTLDLSYTEVTDAGVKALAALKALTALGLKGLT---TL 95
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
+L + D G+ L L L L+LS T V GL+ L+ L L ++ L T ++D +
Sbjct: 96 DLTFTRVTDAGVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGLGGTSVTDAGV 155
Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
++LA L L +L+L + +TD G L+ LTGLT L + +TD+G L KNL L
Sbjct: 156 KELAALKGLTALDLGSMGVTDAGAKELSGLTGLTALGMSFTGVTDAGVKELAALKNLTHL 215
Query: 402 EICGGGLTDAGVKHIKDLSSLTL 424
E+ G+TDAGVK + L SL L
Sbjct: 216 ELAATGVTDAGVKELAALKSLVL 238
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 110/195 (56%), Gaps = 9/195 (4%)
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL--------SSLKSLNLD 356
+ LS T+V +GL+ L+ L L +++LS+T ++D ++ LA L L +L+L
Sbjct: 39 VSLSFTRVTDTGLKELAALKGLTTLDLSYTEVTDAGVKALAALKALTALGLKGLTTLDLT 98
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
++TD G+ AL +L LT LDL +TD G L L +L + G +TDAGVK +
Sbjct: 99 FTRVTDAGVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGLGGTSVTDAGVKEL 158
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
L LT L+L + +TD + +SGLTGL +L +S + +T AG++ L LKNL L L
Sbjct: 159 AALKGLTALDLG-SMGVTDAGAKELSGLTGLTALGMSFTGVTDAGVKELAALKNLTHLEL 217
Query: 477 ESCKVTANDIKRLQS 491
+ VT +K L +
Sbjct: 218 AATGVTDAGVKELAA 232
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 113/214 (52%), Gaps = 17/214 (7%)
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
T D +P++ + +S ++VTD+G+ L L+ LT L+L VT A + +L+AL
Sbjct: 29 TTPDGRPVT------KVSLSFTRVTDTGLKELAALKGLTTLDLSYTEVTDAGVKALAALK 82
Query: 229 --------SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
L L+L +++D G + + + +L L+L +TDE L L L L +
Sbjct: 83 ALTALGLKGLTTLDLTFTRVTDAGVKALAALKALTTLDLSHTLVTDEGLKELAALGALNT 142
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
L L + D G+ L L L L+L V +G + LSGLT L ++ +SFTG++D
Sbjct: 143 LGLGGTSVTDAGVKELAALKGLTALDLGSMGVTDAGAKELSGLTGLTALGMSFTGVTDAG 202
Query: 341 LRKLAGLSSLKSLNLDARQITDTG---LAALTSL 371
+++LA L +L L L A +TD G LAAL SL
Sbjct: 203 VKELAALKNLTHLELAATGVTDAGVKELAALKSL 236
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 106/192 (55%), Gaps = 9/192 (4%)
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT--------NLESINLSFTGISDG 339
+ D GL L L L L+LS T+V +G++ L+ L L +++L+FT ++D
Sbjct: 46 VTDTGLKELAALKGLTTLDLSYTEVTDAGVKALAALKALTALGLKGLTTLDLTFTRVTDA 105
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
++ LA L +L +L+L +TD GL L +L L L L G +TD+G L K L
Sbjct: 106 GVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGLGGTSVTDAGVKELAALKGLT 165
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
+L++ G+TDAG K + L+ LT L +S +TD ++ ++ L L L ++ + +T
Sbjct: 166 ALDLGSMGVTDAGAKELSGLTGLTALGMSFT-GVTDAGVKELAALKNLTHLELAATGVTD 224
Query: 460 AGLRHLKPLKNL 471
AG++ L LK+L
Sbjct: 225 AGVKELAALKSL 236
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 104/210 (49%), Gaps = 17/210 (8%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE-----------HLRG 104
G + V LS + VTD+GL L L +LD ++ +++D G++ L+G
Sbjct: 33 GRPVTKVSLSFTRVTDTGLKELAALKGLTTLDLSY-TEVTDAGVKALAALKALTALGLKG 91
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
L+ L L+F R +T G+KA A L L LDL GL L L L +L +
Sbjct: 92 LTTL-DLTFTR---VTDAGVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGLG- 146
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
+TD+ +K L+ L L +L + VTD+G L GL LT L + VT A + L
Sbjct: 147 GTSVTDAGVKELAALKGLTALDLGSMGVTDAGAKELSGLTGLTALGMSFTGVTDAGVKEL 206
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
+AL +L +L L ++D G ++ + + SL
Sbjct: 207 AALKNLTHLELAATGVTDAGVKELAALKSL 236
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 100/196 (51%), Gaps = 16/196 (8%)
Query: 59 LLSVDLSGSDVTDSGL--------IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110
L ++DLS ++VTD+G+ + L +LD F +++D G++ L L LT+
Sbjct: 60 LTTLDLSYTEVTDAGVKALAALKALTALGLKGLTTLDLTF-TRVTDAGVKALAALKALTT 118
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
L + +T +G+K A L L L L + G+ L L L +L++ +TD
Sbjct: 119 LDLS-HTLVTDEGLKELAALGALNTLGLGGTSVTDAGVKELAALKGLTALDLG-SMGVTD 176
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ K LSGLT L +L +S + VTD+G+ L L+ LT L L VT A + L+AL SL
Sbjct: 177 AGAKELSGLTGLTALGMSFTGVTDAGVKELAALKNLTHLELAATGVTDAGVKELAALKSL 236
Query: 231 FYLNLNRCQLSDDGCE 246
CQ ++ GC
Sbjct: 237 VL-----CQANELGCH 247
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 9/126 (7%)
Query: 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK--------HIKDLSSLTLL 425
+T + L R+TD+G L K L +L++ +TDAGVK L LT L
Sbjct: 36 VTKVSLSFTRVTDTGLKELAALKGLTTLDLSYTEVTDAGVKALAALKALTALGLKGLTTL 95
Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 485
+L+ +TD ++ ++ L L +L++S++ +T GL+ L L L +L L VT
Sbjct: 96 DLTFT-RVTDAGVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGLGGTSVTDAG 154
Query: 486 IKRLQS 491
+K L +
Sbjct: 155 VKELAA 160
>gi|343414367|emb|CCD21012.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
Length = 1699
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 149/443 (33%), Positives = 236/443 (53%), Gaps = 45/443 (10%)
Query: 54 SQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
S+ SSL ++DLS + +TD + L + S+L++LD + C I+D + L LS+L +L
Sbjct: 861 SELSSLHTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLD 916
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL-NIKWCNCITDS 171
IT + + L +L LDL CT G+ ++ L KL SL + +C +
Sbjct: 917 LSHCTGIT--DVSPLSELSSLRTLDLSHCT----GITDVSPLSKLSSLRTLDLSHCTGIT 970
Query: 172 DMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
D+ PLS L++L++L +S C+ +TD ++ L L L L+L C + LS L SL
Sbjct: 971 DVSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHC-TGITDVSPLSELSSL 1027
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GI 288
L+L+ C D S++ SL+ L+L ITD + L L++L +L+L C GI
Sbjct: 1028 RTLDLSHCTGITD-VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTGI 1084
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGL 347
D + L+ L +L+ L+LS G + + LS L++L +++LS TGI+D S L+ L
Sbjct: 1085 TD--VSPLSELSSLRTLDLSHC-TGITDVSPLSELSSLRTLDLSHCTGITDVS--PLSEL 1139
Query: 348 SSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG 405
SSL++L+L ITD ++ L+ L+ L LDL ITD + L +L +LE+
Sbjct: 1140 SSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLCTLELSH 1195
Query: 406 -GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
G+TD V + +LSSL L+LS +TD + +S L+ V L++S+ G+
Sbjct: 1196 CTGITD--VSPLSELSSLRTLDLSHCRGITD--VSPLSELSNFVQLDLSH----CTGITD 1247
Query: 465 LKP---LKNLRSLTLESCKVTAN 484
+ P L +LR+L L C N
Sbjct: 1248 VSPLSVLSSLRTLDLSYCTGITN 1270
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 152/474 (32%), Positives = 240/474 (50%), Gaps = 66/474 (13%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
+L+ L L G+ D S+ SSL ++DLS + +TD + L S+L +L+ +
Sbjct: 1141 SLRTLDLSHCTGITDVSP---LSELSSLRTLDLSHCTGITD--VSPLSKLSSLCTLELSH 1195
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
C I+D + L LS+L +L IT + + L N V+LDL CT I +
Sbjct: 1196 CTGITD--VSPLSELSSLRTLDLSHCRGIT--DVSPLSELSNFVQLDLSHCTGI-TDVSP 1250
Query: 151 LKGLMKLESLNIKWCNCITD---------------------SDMKPLSGLTNLKSLQIS- 188
L L L +L++ +C IT+ +D+ PLS L++L++L +S
Sbjct: 1251 LSVLSSLRTLDLSYCTGITNVSPLSNLSSLRSLDLSHCTGITDVSPLSELSSLRTLDLSH 1310
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
C + + ++ L L L +LNL C + LS L SL L+L+ C D
Sbjct: 1311 CRGI--ANVSPLSNLSSLRMLNLSHC-TGITDVSPLSVLSSLRTLDLSHCTGITD-VSPL 1366
Query: 249 SKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLE 306
S++ SL+ L+L ITD + L L++L +L+L C GI D + L+ L +L+ L
Sbjct: 1367 SELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTGITD--VSPLSVLSSLRTLG 1422
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITD-T 363
LS G + + LS L++L +++LS TGI+D S L+ LSSL++L+L ITD +
Sbjct: 1423 LSHC-TGITDVSPLSELSSLRTLDLSHCTGITDVS--PLSELSSLRTLDLSHCTGITDVS 1479
Query: 364 GLAALTSLT--GLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLS 420
L+ +SL GL+H ITD + L NLR+L++ G+TD V + +LS
Sbjct: 1480 PLSVFSSLRTLGLSHC----TGITD--VSPLSELSNLRTLDLSHCTGITD--VSPLSELS 1531
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
SL L+LS +TD + +S L+ L +L++S+ G+ + PL L SL
Sbjct: 1532 SLRTLDLSHCTGITD--VSPLSELSSLRTLDLSH----CTGITDVSPLSKLSSL 1579
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 156/495 (31%), Positives = 242/495 (48%), Gaps = 85/495 (17%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
+L+ L L G+ D S+ SSL ++DLS + +TD + L S+L++LD +
Sbjct: 911 SLRTLDLSHCTGITDVSP---LSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSH 965
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
C I+D + L LS+L +L IT + + L +L LDL CT I +
Sbjct: 966 CTGITD--VSPLSELSSLRTLDLSHCTGIT--DVSPLSKLSSLRTLDLSHCTGI-TDVSP 1020
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLL 209
L L L +L++ C ITD + PLS L++L++L +S C+ +TD ++ L L L L
Sbjct: 1021 LSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTL 1076
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDEC 268
+L C + LS L SL L+L+ C D S++ SL+ L+L ITD
Sbjct: 1077 DLSHC-TGITDVSPLSELSSLRTLDLSHCTGITD-VSPLSELSSLRTLDLSHCTGITD-- 1132
Query: 269 LVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
+ L L++L +L+L C GI D + L+ L +L+ L+LS G + + LS L++L
Sbjct: 1133 VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHC-TGITDVSPLSKLSSLC 1189
Query: 328 SINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-I 384
++ LS TGI+D S L+ LSSL++L+L R ITD ++ L+ L+ LDL I
Sbjct: 1190 TLELSHCTGITDVS--PLSELSSLRTLDLSHCRGITD--VSPLSELSNFVQLDLSHCTGI 1245
Query: 385 TDSGAAYLRNFKNLRSLEI--CGG----------------------GLTD---------- 410
TD + L +LR+L++ C G G+TD
Sbjct: 1246 TD--VSPLSVLSSLRTLDLSYCTGITNVSPLSNLSSLRSLDLSHCTGITDVSPLSELSSL 1303
Query: 411 -----------AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
A V + +LSSL +LNLS +TD + +S L+ L +L++S+
Sbjct: 1304 RTLDLSHCRGIANVSPLSNLSSLRMLNLSHCTGITD--VSPLSVLSSLRTLDLSH----C 1357
Query: 460 AGLRHLKPLKNLRSL 474
G+ + PL L SL
Sbjct: 1358 TGITDVSPLSELSSL 1372
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 136/420 (32%), Positives = 217/420 (51%), Gaps = 52/420 (12%)
Query: 81 SNLQSLDFNFCIQISD------------GGLEHLRGLSNLTSLS----FRRNNAITAQGM 124
S+L++LD ++C I++ L H G+++++ LS R + +G+
Sbjct: 1255 SSLRTLDLSYCTGITNVSPLSNLSSLRSLDLSHCTGITDVSPLSELSSLRTLDLSHCRGI 1314
Query: 125 KAFAGLINLVKL---DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+ L NL L +L CT I + L L L +L++ C ITD + PLS L++
Sbjct: 1315 ANVSPLSNLSSLRMLNLSHCTGI-TDVSPLSVLSSLRTLDLSHCTGITD--VSPLSELSS 1371
Query: 182 LKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
L++L +S C+ +TD ++ L L L L+L C + LS L SL L L+ C
Sbjct: 1372 LRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHC-TGITDVSPLSVLSSLRTLGLSHCTG 1428
Query: 241 SDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 298
D S++ SL+ L+L ITD + L L++L +L+L C GI D + L+
Sbjct: 1429 ITD-VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSV 1483
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD- 356
+L+ L LS G + + LS L+NL +++LS TGI+D S L+ LSSL++L+L
Sbjct: 1484 FSSLRTLGLSHC-TGITDVSPLSELSNLRTLDLSHCTGITDVS--PLSELSSLRTLDLSH 1540
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVK 414
ITD ++ L+ L+ L LDL ITD + L +LR+L++ G+TD V
Sbjct: 1541 CTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTGITD--VS 1594
Query: 415 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
+ +LSSL L+LS +TD + +S L+ L +L++S+ G+ + PL L SL
Sbjct: 1595 PLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSH----CTGITDVSPLSKLSSL 1648
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 149/478 (31%), Positives = 238/478 (49%), Gaps = 61/478 (12%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
+L+ L L G+ D S+ SSL ++DLS + +TD + L + S+L++LD +
Sbjct: 1072 SLRTLDLSHCTGITDVSP---LSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSH 1126
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
C I+D + L LS+L +L IT + + L +L LDL CT G+ +
Sbjct: 1127 CTGITD--VSPLSELSSLRTLDLSHCTGIT--DVSPLSELSSLRTLDLSHCT----GITD 1178
Query: 151 LKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTL 208
+ L KL SL ++ +C +D+ PLS L++L++L +S C +TD ++ L L
Sbjct: 1179 VSPLSKLSSLCTLELSHCTGITDVSPLSELSSLRTLDLSHCRGITD--VSPLSELSNFVQ 1236
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L+L C + LS L SL L+L+ C + + + ITD
Sbjct: 1237 LDLSHC-TGITDVSPLSVLSSLRTLDLSYCTGITNVSPLSNLSSLRSLDLSHCTGITD-- 1293
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ--VGSSGLRHLSGLTNL 326
+ L L++L +L+L C G+ N++ L NL L + + G + + LS L++L
Sbjct: 1294 VSPLSELSSLRTLDLSHC----RGIANVSPLSNLSSLRMLNLSHCTGITDVSPLSVLSSL 1349
Query: 327 ESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR- 383
+++LS TGI+D S L+ LSSL++L+L ITD ++ L+ L+ L LDL
Sbjct: 1350 RTLDLSHCTGITDVS--PLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTG 1405
Query: 384 ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTD------- 435
ITD + L +LR+L + G+TD V + +LSSL L+LS +TD
Sbjct: 1406 ITD--VSPLSVLSSLRTLGLSHCTGITD--VSPLSELSSLRTLDLSHCTGITDVSPLSEL 1461
Query: 436 ---KTLEL--ISGLTGLVSLNVSNSRITSAGLRH---------LKPLKNLRSLTLESC 479
+TL+L +G+T + L+V +S + + GL H L L NLR+L L C
Sbjct: 1462 SSLRTLDLSHCTGITDVSPLSVFSS-LRTLGLSHCTGITDVSPLSELSNLRTLDLSHC 1518
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 151/484 (31%), Positives = 240/484 (49%), Gaps = 73/484 (15%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
+L+ L L G+ D S+ SSL ++DLS + +TD + L + S+L++LD +
Sbjct: 980 SLRTLDLSHCTGITDVSP---LSKLSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSH 1034
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
C I+D + L LS+L +L IT + + L +L LDL CT I +
Sbjct: 1035 CTGITD--VSPLSELSSLRTLDLSHCTGIT--DVSPLSKLSSLRTLDLSHCTGI-TDVSP 1089
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLL 209
L L L +L++ C ITD + PLS L++L++L +S C+ +TD ++ L L L L
Sbjct: 1090 LSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTL 1145
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDEC 268
+L C + LS L SL L+L+ C D SK+ SL L L ITD
Sbjct: 1146 DLSHC-TGITDVSPLSELSSLRTLDLSHCTGITD-VSPLSKLSSLCTLELSHCTGITD-- 1201
Query: 269 LVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
+ L L++L +L+L C GI D + L+ L N L+LS G + + LS L++L
Sbjct: 1202 VSPLSELSSLRTLDLSHCRGITD--VSPLSELSNFVQLDLSHC-TGITDVSPLSVLSSLR 1258
Query: 328 SINLSF------------------------TGISDGSLRKLAGLSSLKSLNLDARQITDT 363
+++LS+ TGI+D S L+ LSSL++L+L +
Sbjct: 1259 TLDLSYCTGITNVSPLSNLSSLRSLDLSHCTGITDVS--PLSELSSLRTLDLSHCR---- 1312
Query: 364 GLAALTSLTGLTHLDLFG----ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKD 418
G+A ++ L+ L+ L + ITD + L +LR+L++ G+TD V + +
Sbjct: 1313 GIANVSPLSNLSSLRMLNLSHCTGITD--VSPLSVLSSLRTLDLSHCTGITD--VSPLSE 1368
Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP---LKNLRSLT 475
LSSL L+LS +TD + +S L+ L +L++S+ G+ + P L +LR+L
Sbjct: 1369 LSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSH----CTGITDVSPLSVLSSLRTLG 1422
Query: 476 LESC 479
L C
Sbjct: 1423 LSHC 1426
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 138/451 (30%), Positives = 226/451 (50%), Gaps = 45/451 (9%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFC 91
LQ L L G+ D S SS +DLS + +TD + L S+L++LD + C
Sbjct: 475 LQKLYLSHCTGITDVPP---LSALSSFEKLDLSHCTGITD--VSPLSVLSSLRTLDISHC 529
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
I+D + L ++ L L IT + + L + KLDL CT G+ ++
Sbjct: 530 TGITD--VSPLSKMNGLQKLYLSHCTGIT--DVPPLSALSSFEKLDLSHCT----GITDV 581
Query: 152 KGLMKLESLN-IKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLL 209
L KL SL+ + +C +++ PL ++L+ L IS C+ +T+ ++ L L L L
Sbjct: 582 SPLSKLSSLHTLDLSHCTGITNVSPLLKFSSLRMLDISHCTGITN--VSPLSELSSLRTL 639
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDEC 268
+L C + LS SL L+L+ C SK SL++L++ IT+
Sbjct: 640 DLSHC-TGITDVSPLSKFSSLHTLDLSHCT-GITNVSPLSKFSSLRMLDISHCTGITN-- 695
Query: 269 LVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
+ L L++L +L+L C GI D + L+ L +L+ L+ S G + + LS L++L
Sbjct: 696 VSPLSKLSSLHTLDLSHCTGITD--VSPLSKLSSLRTLDFSHC-TGITNVSPLSELSSLR 752
Query: 328 SINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGAR-I 384
++++S TGI+D S L+ LSSL++L+L TD T ++ L+ ++ L LDL +
Sbjct: 753 TLDISHCTGITDVS--PLSELSSLRTLDL--SHCTDITNVSPLSKISTLQKLDLSHCTGV 808
Query: 385 TDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
TD + L L L + G+TD V + +LSSL +L+LS +TD + +S
Sbjct: 809 TD--VSPLSKMIGLEKLYLSHCTGITD--VPPLSELSSLRMLDLSHCTGITD--VSPLSE 862
Query: 444 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
L+ L +L++S+ G+ + PL L SL
Sbjct: 863 LSSLHTLDLSH----CTGITDVSPLSELSSL 889
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 128/379 (33%), Positives = 202/379 (53%), Gaps = 34/379 (8%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
SSL ++DLS + +TD + L + S+L++LD + C I+D + L LS+L +L
Sbjct: 1347 SSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSH 1402
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
IT + + L +L L L CT I + L L L +L++ C IT D+ P
Sbjct: 1403 CTGIT--DVSPLSVLSSLRTLGLSHCTGI-TDVSPLSELSSLRTLDLSHCTGIT--DVSP 1457
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
LS L++L++L +S C+ +TD ++ L L L L C + LS L +L L+
Sbjct: 1458 LSELSSLRTLDLSHCTGITD--VSPLSVFSSLRTLGLSHC-TGITDVSPLSELSNLRTLD 1514
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEG 292
L+ C D S++ SL+ L+L ITD + L L++L +L+L C GI D
Sbjct: 1515 LSHCTGITD-VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD-- 1569
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLK 351
+ L+ L +L+ L+LS G + + LS L++L +++LS TGI+D S L+ LSSL+
Sbjct: 1570 VSPLSKLSSLRTLDLSHC-TGITDVSPLSELSSLRTLDLSHCTGITDVS--PLSELSSLR 1626
Query: 352 SLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGL 408
+L+L ITD ++ L+ L+ L LDL ITD + L +LR+L++ G+
Sbjct: 1627 TLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLLHCTGI 1682
Query: 409 TDAGVKHIKDLSSLTLLNL 427
TD V + +LSSL L+
Sbjct: 1683 TD--VSPLSELSSLGTLDF 1699
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 123/375 (32%), Positives = 190/375 (50%), Gaps = 50/375 (13%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
+L+ L L G+ D S+ SSL ++DLS + +TD + L S+L++LD +
Sbjct: 1348 SLRTLDLSHCTGITDVSP---LSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSH 1402
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
C I+D + L LS+L +L IT + + L +L LDL CT I +
Sbjct: 1403 CTGITD--VSPLSVLSSLRTLGLSHCTGIT--DVSPLSELSSLRTLDLSHCTGI-TDVSP 1457
Query: 151 LKGLMKLESLNIKWCNCITD---------------------SDMKPLSGLTNLKSLQIS- 188
L L L +L++ C ITD +D+ PLS L+NL++L +S
Sbjct: 1458 LSELSSLRTLDLSHCTGITDVSPLSVFSSLRTLGLSHCTGITDVSPLSELSNLRTLDLSH 1517
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
C+ +TD ++ L L L L+L C + LS L SL L+L+ C D
Sbjct: 1518 CTGITD--VSPLSELSSLRTLDLSHC-TGITDVSPLSELSSLRTLDLSHCTGITD-VSPL 1573
Query: 249 SKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLE 306
SK+ SL+ L+L ITD + L L++L +L+L C GI D + L+ L +L+ L+
Sbjct: 1574 SKLSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLD 1629
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLN-LDARQITDTG 364
LS G + + LS L++L +++LS TGI+D S L+ LSSL++L+ L ITD
Sbjct: 1630 LSHC-TGITDVSPLSKLSSLRTLDLSHCTGITDVS--PLSELSSLRTLDLLHCTGITD-- 1684
Query: 365 LAALTSLTGLTHLDL 379
++ L+ L+ L LD
Sbjct: 1685 VSPLSELSSLGTLDF 1699
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 131/414 (31%), Positives = 208/414 (50%), Gaps = 37/414 (8%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
D+ D L L L++LD + C I+D L L LS L +L IT +
Sbjct: 345 DINDVTLRDLDGNECLRTLDLSHCTGITDVSL--LSKLSGLHTLGLSHCTGIT--DVSPL 400
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
+ L L L L CT I + L L L +L + C IT D+ PLS ++L++L I
Sbjct: 401 SNLSGLRMLGLSHCTGI-TDVSPLSELSSLRTLGLSHCTGIT--DVSPLSVFSSLRTLGI 457
Query: 188 S-CSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
S C+ +TD S ++ + GLQKL L + G +T + LSAL S L+L+ C D
Sbjct: 458 SHCTGITDVSPLSKMNGLQKLYLSHCTG--ITD--VPPLSALSSFEKLDLSHCTGITD-V 512
Query: 246 EKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLK 303
S + SL+ L++ ITD + L + L+ L L C GI D + L+ L + +
Sbjct: 513 SPLSVLSSLRTLDISHCTGITD--VSPLSKMNGLQKLYLSHCTGITD--VPPLSALSSFE 568
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITD 362
L+LS G + + LS L++L +++LS TGI++ S L SSL+ L++ +
Sbjct: 569 KLDLSHC-TGITDVSPLSKLSSLHTLDLSHCTGITNVS--PLLKFSSLRMLDI-SHCTGI 624
Query: 363 TGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLS 420
T ++ L+ L+ L LDL ITD + L F +L +L++ G+T+ V + S
Sbjct: 625 TNVSPLSELSSLRTLDLSHCTGITD--VSPLSKFSSLHTLDLSHCTGITN--VSPLSKFS 680
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
SL +L++S +T+ + +S L+ L +L++S+ G+ + PL L SL
Sbjct: 681 SLRMLDISHCTGITN--VSPLSKLSSLHTLDLSH----CTGITDVSPLSKLSSL 728
>gi|290996590|ref|XP_002680865.1| predicted protein [Naegleria gruberi]
gi|284094487|gb|EFC48121.1| predicted protein [Naegleria gruberi]
Length = 304
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 140/265 (52%), Gaps = 4/265 (1%)
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLE 279
+D L S+ L+ N Q+ + FSK+ +L L+L +NE +TD + + + ++
Sbjct: 2 IDYFPTLESVTDLSFNHHQVRITNTKIFSKLKNLTALDLSYNELVTDAHVKEISLIPSMR 61
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
LN+ IG + +V ++ + L+ L L + ++ + + +L LTNL+ +N S S G
Sbjct: 62 RLNIFCTDIGKQSIVYISEMKLLESLILGELRLEAESVAYLKKLTNLKELNCS--PDSYG 119
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
+ L+ + SL SL L+ + + + ++ LT L HL L+ + I GA +L N +
Sbjct: 120 TSAHLSEMKSLNSLILNVKYNKEEDIENISKLTSLNHLKLWNSNINSKGAEFLSNISSFT 179
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
SL + G + DAG+ +I L++LT LNLS N L+D + + L L LN++ + I
Sbjct: 180 SLNLSGNVIRDAGLVNIGKLANLTFLNLSYNG-LSDSGITNLGNLRKLTDLNLNGNNIED 238
Query: 460 AGLRHLKPLKNLRSLTLESCKVTAN 484
G + + +L+ L L + ++T N
Sbjct: 239 QGAKIISKFSHLKYLQLRNNQITKN 263
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 147/332 (44%), Gaps = 51/332 (15%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+++ L ++T LSF + + K F+ L NL LDL
Sbjct: 2 IDYFPTLESVTDLSFNHH-QVRITNTKIFSKLKNLTALDLS------------------- 41
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+ +TD+ +K +S + +++ L I C+ + I Y+ ++ L L L + A
Sbjct: 42 -----YNELVTDAHVKEISLIPSMRRLNIFCTDIGKQSIVYISEMKLLESLILGELRLEA 96
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
+ L L +L LN C G HL + +L
Sbjct: 97 ESVAYLKKLTNLKELN---CSPDSYGTS-----------------------AHLSEMKSL 130
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
SL L+ +E + N++ L +L L+L ++ + S G LS +++ S+NLS I D
Sbjct: 131 NSLILNVKYNKEEDIENISKLTSLNHLKLWNSNINSKGAEFLSNISSFTSLNLSGNVIRD 190
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
L + L++L LNL ++D+G+ L +L LT L+L G I D GA + F +L
Sbjct: 191 AGLVNIGKLANLTFLNLSYNGLSDSGITNLGNLRKLTDLNLNGNNIEDQGAKIISKFSHL 250
Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
+ L++ +T G ++ +L+SL L+L +N
Sbjct: 251 KYLQLRNNQITKNGANYLSNLNSLYSLDLREN 282
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 132/287 (45%), Gaps = 42/287 (14%)
Query: 52 IASQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110
I S+ +L ++DLS ++ VTD+ + + +++ L+ FC I + ++ + L S
Sbjct: 28 IFSKLKNLTALDLSYNELVTDAHVKEISLIPSMRRLNI-FCTDIGKQSIVYISEMKLLES 86
Query: 111 L---SFRRNNAITAQGMKAFAGLINLVKLDLERCTR-IHGGLVNLKGLMKLESL--NIKW 164
L R + A+ + L NL +L+ C+ +G +L + L SL N+K+
Sbjct: 87 LILGELR----LEAESVAYLKKLTNLKELN---CSPDSYGTSAHLSEMKSLNSLILNVKY 139
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
+ D++ +S LT+L L++ S + G +L + T LNL G + A L ++
Sbjct: 140 N---KEEDIENISKLTSLNHLKLWNSNINSKGAEFLSNISSFTSLNLSGNVIRDAGLVNI 196
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
L +L +LNL+ LSD G + L LNL N
Sbjct: 197 GKLANLTFLNLSYNGLSDSGITNLGNLRKLTDLNLNGN---------------------- 234
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
I D+G ++ +LK L+L + Q+ +G +LS L +L S++L
Sbjct: 235 --NIEDQGAKIISKFSHLKYLQLRNNQITKNGANYLSNLNSLYSLDL 279
>gi|299066813|emb|CBJ38007.1| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
solanacearum CMR15]
Length = 457
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 110/395 (27%), Positives = 182/395 (46%), Gaps = 29/395 (7%)
Query: 81 SNLQSLDFNFCI-QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
++L+ LD + C I+ G+ HL L L L+ R N I A+G + A L L++
Sbjct: 63 ASLKELDLSQCRGPITAAGMAHLSRLP-LVRLNVR-NKRIGAKGARLLANHPTLTSLNVS 120
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
G L G M+L +LN+ N + + K L+ L+SL +S +++ D
Sbjct: 121 NNRIGPEGAQALAGNMRLTTLNVS-GNRLGVEEAKALAANQTLRSLDVSDNRIGD----- 174
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
EG V AAC L L+ NR + DG + +L+ L +
Sbjct: 175 ------------EGARVLAACTQ-------LTTLDANRNGIGVDGATALAACPTLRSLGI 215
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
G N I D ++ L L +LN++S G+G G+ L L L L +G++G
Sbjct: 216 GGNAIGDAGVLALAANARLTTLNVESTGVGAVGVGALAASKALTWLRLDGNGIGNAGATA 275
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
L+ T L +++L+ I + LA + L +L+L +I DTG+ AL + L L +
Sbjct: 276 LAASTRLTTLHLARNKIGAEGAQALAANTKLTTLDLGYNKIGDTGVRALAANATLVSLTV 335
Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
+ D A L + L +L++ G G+ D G K + +LT L++S N ++ +
Sbjct: 336 RRNDLKDESAVILAASRTLTTLDLSGNGIEDQGAKALAANPTLTTLDVSSN-DIKNAGAR 394
Query: 440 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
++ LV L++ ++R+ AG R L + L SL
Sbjct: 395 ALAANARLVWLDLRHNRMEEAGTRALLANRTLSSL 429
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 137/291 (47%), Gaps = 10/291 (3%)
Query: 200 LKGLQK-LTLLNLEGC--PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
L+GL L L+L C P+TAA + LS L L LN+ ++ G + +L
Sbjct: 58 LRGLPASLKELDLSQCRGPITAAGMAHLSRL-PLVRLNVRNKRIGAKGARLLANHPTLTS 116
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
LN+ N I E L G L +LN+ +G E L L+ L++SD ++G G
Sbjct: 117 LNVSNNRIGPEGAQALAGNMRLTTLNVSGNRLGVEEAKALAANQTLRSLDVSDNRIGDEG 176
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
R L+ T L +++ + GI LA +L+SL + I D G+ AL + LT
Sbjct: 177 ARVLAACTQLTTLDANRNGIGVDGATALAACPTLRSLGIGGNAIGDAGVLALAANARLTT 236
Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436
L++ + G L K L L + G G+ +AG + + LT L+L++N + +
Sbjct: 237 LNVESTGVGAVGVGALAASKALTWLRLDGNGIGNAGATALAASTRLTTLHLARN-KIGAE 295
Query: 437 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 487
+ ++ T L +L++ ++I G+R L L SLT V ND+K
Sbjct: 296 GAQALAANTKLTTLDLGYNKIGDTGVRALAANATLVSLT-----VRRNDLK 341
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 103/377 (27%), Positives = 162/377 (42%), Gaps = 38/377 (10%)
Query: 57 SSLLSVDLSG--SDVTDSGLIHLKDCSNLQSLDFNF-CIQISDGGLEHLRGLSNLTSLSF 113
+SL +DLS +T +G+ HL S L + N +I G L LTSL+
Sbjct: 63 ASLKELDLSQCRGPITAAGMAHL---SRLPLVRLNVRNKRIGAKGARLLANHPTLTSLNV 119
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK---LESLNIKWCNCITD 170
NN I +G +A AG + L L++ R+ G+ K L L SL++ N I D
Sbjct: 120 S-NNRIGPEGAQALAGNMRLTTLNVS-GNRL--GVEEAKALAANQTLRSLDVS-DNRIGD 174
Query: 171 SDMKPLSGLTNL------------------------KSLQISCSKVTDSGIAYLKGLQKL 206
+ L+ T L +SL I + + D+G+ L +L
Sbjct: 175 EGARVLAACTQLTTLDANRNGIGVDGATALAACPTLRSLGIGGNAIGDAGVLALAANARL 234
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
T LN+E V A + +L+A +L +L L+ + + G + L L+L N+I
Sbjct: 235 TTLNVESTGVGAVGVGALAASKALTWLRLDGNGIGNAGATALAASTRLTTLHLARNKIGA 294
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
E L T L +L+L IGD G+ L L L + + L+ L
Sbjct: 295 EGAQALAANTKLTTLDLGYNKIGDTGVRALAANATLVSLTVRRNDLKDESAVILAASRTL 354
Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+++LS GI D + LA +L +L++ + I + G AL + L LDL R+ +
Sbjct: 355 TTLDLSGNGIEDQGAKALAANPTLTTLDVSSNDIKNAGARALAANARLVWLDLRHNRMEE 414
Query: 387 SGAAYLRNFKNLRSLEI 403
+G L + L SL +
Sbjct: 415 AGTRALLANRTLSSLGV 431
>gi|317420071|emb|CBN82107.1| Uncharacterized protein [Dicentrarchus labrax]
Length = 889
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 114/410 (27%), Positives = 190/410 (46%), Gaps = 47/410 (11%)
Query: 5 DISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDL 64
++++ + N + R L +LE F C LQ L YP ++ + + + ++L + L
Sbjct: 469 ELAELLLNHMSRERLLRPRTLELFFGCPLQKFVLNCYPYSTNELLRQLRA-FTALKHLSL 527
Query: 65 SGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S +TDSGL + LQ L+ C +++D L+H+ GL +L LS + +T G
Sbjct: 528 VNSPLITDSGLSIFSSLAKLQYLNLASCSKLTDSCLQHITGLKSLCFLSLDQTK-VTDAG 586
Query: 124 MKAF--AGLINLVKLDLERCTRIHGGLVNLKG-LMKLESLNIKWCNCITDSDMKPLSGLT 180
M + + L +L L + LV L + +L L+IK D+ L+ L+
Sbjct: 587 MVLYLQSAPSCLSQLSLNQTAVTEASLVVLPTCVPQLRLLSIKQTKV---KDVSALARLS 643
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR--- 237
NL++L + + VT+S + +L L+ L+L G PV D AL + L L +
Sbjct: 644 NLQTLNLDVTGVTESSLEHLSSHPTLSSLSLAGIPVA----DGNQALQIISDLRLTQLTL 699
Query: 238 ----------------------------CQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
Q++D G + S + LK L+L ++TD L
Sbjct: 700 PGRHTVTDSGLSFLSRLSLLLELDLTDYTQVTDQGVSQLSTMTRLKKLSLSNTQVTDAGL 759
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLELSDTQVGSSGLRH-LSGLTNLE 327
L+GL L+ L LD + G+ +L T L +L+ L L+ TQVG + +R + L
Sbjct: 760 PSLRGLQELQELCLDRTAVTSRGVADLITCLPHLQVLGLASTQVGDTVVRRGVIRCNQLV 819
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
+NLS T I+D L+ L + L +NLD ++ G+A L S T ++ +
Sbjct: 820 KLNLSRTRITDHGLKCLKHM-HLAQVNLDGTGVSLIGIANLLSFTNISSI 868
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 98/306 (32%), Positives = 158/306 (51%), Gaps = 22/306 (7%)
Query: 203 LQKLTLLNLEGCPV-----------TAACLDSLSALGSLFYLNL-NRCQLSDDGCEKFSK 250
L+ TL GCP+ T L L A +L +L+L N ++D G FS
Sbjct: 484 LRPRTLELFFGCPLQKFVLNCYPYSTNELLRQLRAFTALKHLSLVNSPLITDSGLSIFSS 543
Query: 251 IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL--TGLCNLKCLEL 307
+ L+ LNL +++TD CL H+ GL +L L+LD + D G+V + L L L
Sbjct: 544 LAKLQYLNLASCSKLTDSCLQHITGLKSLCFLSLDQTKVTDAGMVLYLQSAPSCLSQLSL 603
Query: 308 SDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
+ T V + L L + L +++ T + D S LA LS+L++LNLD +T++ L
Sbjct: 604 NQTAVTEASLVVLPTCVPQLRLLSIKQTKVKDVS--ALARLSNLQTLNLDVTGVTESSLE 661
Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG---LTDAGVKHIKDLSSLT 423
L+S L+ L L G + D G L+ +LR ++ G +TD+G+ + LS L
Sbjct: 662 HLSSHPTLSSLSLAGIPVAD-GNQALQIISDLRLTQLTLPGRHTVTDSGLSFLSRLSLLL 720
Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 483
L+L+ +TD+ + +S +T L L++SN+++T AGL L+ L+ L+ L L+ VT+
Sbjct: 721 ELDLTDYTQVTDQGVSQLSTMTRLKKLSLSNTQVTDAGLPSLRGLQELQELCLDRTAVTS 780
Query: 484 NDIKRL 489
+ L
Sbjct: 781 RGVADL 786
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 118/244 (48%), Gaps = 15/244 (6%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL--INLV 134
L SNLQ+L+ + +++ LEHL L+SLS A G +A + + L
Sbjct: 639 LARLSNLQTLNLD-VTGVTESSLEHLSSHPTLSSLSL--AGIPVADGNQALQIISDLRLT 695
Query: 135 KLDLE-RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+L L R T GL L L L L++ +TD + LS +T LK L +S ++VT
Sbjct: 696 QLTLPGRHTVTDSGLSFLSRLSLLLELDLTDYTQVTDQGVSQLSTMTRLKKLSLSNTQVT 755
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTA-ACLDSLSALGSLFYLNLNRCQLSDDGCEK-FSKI 251
D+G+ L+GLQ+L L L+ VT+ D ++ L L L L Q+ D + +
Sbjct: 756 DAGLPSLRGLQELQELCLDRTAVTSRGVADLITCLPHLQVLGLASTQVGDTVVRRGVIRC 815
Query: 252 GSLKVLNLGFNEITD---ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
L LNL ITD +CL H+ +L +NLD G+ G+ NL N+ + S
Sbjct: 816 NQLVKLNLSRTRITDHGLKCLKHM----HLAQVNLDGTGVSLIGIANLLSFTNISSIRAS 871
Query: 309 DTQV 312
+T+
Sbjct: 872 NTRT 875
>gi|344169683|emb|CCA82044.1| putative leucine-rich-repeat type III effector protein (GALA1-like)
[blood disease bacterium R229]
Length = 590
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 126/426 (29%), Positives = 193/426 (45%), Gaps = 8/426 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRR 115
++L + LSG DVTD L L ++L++LD + C QI+ G+ HL L L L+
Sbjct: 121 AALEKLTLSG-DVTDDDLKGLP--ASLKALDLSDCRAQITSEGIAHLSKLP-LVRLNVSH 176
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N I A+G + A + L +LD+ G L L LN+ N I D +
Sbjct: 177 NR-IDAEGARLLAAMPTLTELDISHNDIRADGAQALADSATLTLLNVG-NNRIGDRGAQA 234
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ T L SL S + + +G+ L L L+L P+ +L+ +L LN+
Sbjct: 235 LAANTKLTSLNASANGIGSAGVQALAANATLAALDLSCTPIDEESAQALARNTTLTSLNV 294
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
+L D G + +L LN+ NEI E L T+L SL++ +G +G
Sbjct: 295 RLSRLGDAGARALAATTTLTSLNVSLNEIGPEGAKALANNTSLTSLDIGGNKVGVDGAQA 354
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
L L L + ++ +G + L+ T L S+++S G+ R +L SL +
Sbjct: 355 LATSMTLTSLVIHRNRIEVAGAQALANNTRLTSLDISDNGLGVWGARAFVDNETLTSLRI 414
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
I D G L T LT LD+ RI ++GA L L SL I G + GV
Sbjct: 415 ATNMIGDEGAKWLARNTTLTSLDIGENRIGETGAQALAGNTKLTSLNISGNAIGMMGVLR 474
Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
+ ++L LN+S+N +L T L SL V+ + I + G R L K L SL+
Sbjct: 475 LARNTTLAALNVSRNQIGVAGAQDLARNTT-LRSLVVNYNEIGNEGARALAGNKTLVSLS 533
Query: 476 LESCKV 481
+ C++
Sbjct: 534 VVDCRI 539
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 118/252 (46%), Gaps = 3/252 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L S+++S +++ G L + ++L SLD ++ G + L LTSL RN
Sbjct: 311 TTLTSLNVSLNEIGPEGAKALANNTSLTSLDIGGN-KVGVDGAQALATSMTLTSLVIHRN 369
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
I G +A A L LD+ G L SL I N I D K L
Sbjct: 370 R-IEVAGAQALANNTRLTSLDISDNGLGVWGARAFVDNETLTSLRIA-TNMIGDEGAKWL 427
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ T L SL I +++ ++G L G KLT LN+ G + + L+ +L LN++
Sbjct: 428 ARNTTLTSLDIGENRIGETGAQALAGNTKLTSLNISGNAIGMMGVLRLARNTTLAALNVS 487
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
R Q+ G + ++ +L+ L + +NEI +E L G L SL++ C IGDEG L
Sbjct: 488 RNQIGVAGAQDLARNTTLRSLVVNYNEIGNEGARALAGNKTLVSLSVVDCRIGDEGAHAL 547
Query: 297 TGLCNLKCLELS 308
L L++S
Sbjct: 548 AANTTLALLDVS 559
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 106/380 (27%), Positives = 175/380 (46%), Gaps = 11/380 (2%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L +D+S +D+ G L D + L L+ +I D G + L + LTSL+ N
Sbjct: 192 TLTELDISHNDIRADGAQALADSATLTLLNVGNN-RIGDRGAQALAANTKLTSLNASAN- 249
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
I + G++A A L LDL CT I L L SLN++ + D+ + L
Sbjct: 250 GIGSAGVQALAANATLAALDLS-CTPIDEESAQALARNTTLTSLNVRLSR-LGDAGARAL 307
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ T L SL +S +++ G L LT L++ G V +L+ +L L ++
Sbjct: 308 AATTTLTSLNVSLNEIGPEGAKALANNTSLTSLDIGGNKVGVDGAQALATSMTLTSLVIH 367
Query: 237 RCQLSDDGCEKFS---KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
R ++ G + + ++ SL + + G V + LT SL + + IGDEG
Sbjct: 368 RNRIEVAGAQALANNTRLTSLDISDNGLGVWGARAFVDNETLT---SLRIATNMIGDEGA 424
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L L L++ + ++G +G + L+G T L S+N+S I + +LA ++L +L
Sbjct: 425 KWLARNTTLTSLDIGENRIGETGAQALAGNTKLTSLNISGNAIGMMGVLRLARNTTLAAL 484
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
N+ QI G L T L L + I + GA L K L SL + + D G
Sbjct: 485 NVSRNQIGVAGAQDLARNTTLRSLVVNYNEIGNEGARALAGNKTLVSLSVVDCRIGDEGA 544
Query: 414 KHIKDLSSLTLLNLSQNCNL 433
+ ++L LL++S N ++
Sbjct: 545 HALAANTTLALLDVSLNRHI 564
>gi|46447466|ref|YP_008831.1| hypothetical protein pc1832 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401107|emb|CAF24556.1| hypothetical protein pc1832 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 456
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 98/171 (57%), Gaps = 5/171 (2%)
Query: 326 LESINLSFTG-ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGA- 382
+E++N S ++D L L +LK L+L + TD GLA LT LT L HLDL G
Sbjct: 225 IEALNFSNNADLTDAHLLALKNCKNLKVLDLQECWNFTDAGLAHLTPLTALQHLDLTGCF 284
Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
R+TD+G A+L L+ L + G LTDAG+ H+K L +L L+L + NLTD L +
Sbjct: 285 RVTDTGLAHLSPLVALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCWNLTDAGLAHLR 344
Query: 443 GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQS 491
L L LN++N IT GL HL PL L+ L L C K+T N + RL+S
Sbjct: 345 PLVALQHLNLTNCENITDVGLAHLTPLVALKHLDLMQCWKLTGNGLARLRS 395
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 118/223 (52%), Gaps = 4/223 (1%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
+ +D+TD+ L+ LK+C NL+ LD C +D GL HL L+ L L +T G+
Sbjct: 232 NNADLTDAHLLALKNCKNLKVLDLQECWNFTDAGLAHLTPLTALQHLDLTGCFRVTDTGL 291
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
+ L+ L L+L C GLV+LK L+ L+ L++ C +TD+ + L L L+
Sbjct: 292 AHLSPLVALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCWNLTDAGLAHLRPLVALQH 351
Query: 185 LQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLS 241
L ++ C +TD G+A+L L L L+L C +T L L +L +L +LNL+ C L+
Sbjct: 352 LNLTNCENITDVGLAHLTPLVALKHLDLMQCWKLTGNGLARLRSLVALQHLNLSGCSYLT 411
Query: 242 DDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNL 283
D G + +L+ L+L E+TD L H K L L+L
Sbjct: 412 DAGLAHLRPLVALQHLDLANCYELTDAGLAHFKFLAATTHLDL 454
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 120/219 (54%), Gaps = 7/219 (3%)
Query: 216 VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLK 273
+T A L +L +L L+L C +D G + + +L+ L+L G +TD L HL
Sbjct: 236 LTDAHLLALKNCKNLKVLDLQECWNFTDAGLAHLTPLTALQHLDLTGCFRVTDTGLAHLS 295
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS 332
L L+ LNL C + D GLV+L L LK L+L + +GL HL L L+ +NL+
Sbjct: 296 PLVALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCWNLTDAGLAHLRPLVALQHLNLT 355
Query: 333 F-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-ARITDSGA 389
I+D L L L +LK L+L ++T GLA L SL L HL+L G + +TD+G
Sbjct: 356 NCENITDVGLAHLTPLVALKHLDLMQCWKLTGNGLARLRSLVALQHLNLSGCSYLTDAGL 415
Query: 390 AYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 427
A+LR L+ L++ LTDAG+ H K L++ T L+L
Sbjct: 416 AHLRPLVALQHLDLANCYELTDAGLAHFKFLAATTHLDL 454
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 117/217 (53%), Gaps = 11/217 (5%)
Query: 272 LKGLTN-LESLNL-DSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLES 328
LK +N +E+LN ++ + D L+ L NLK L+L + +GL HL+ LT L+
Sbjct: 218 LKYFSNEIEALNFSNNADLTDAHLLALKNCKNLKVLDLQECWNFTDAGLAHLTPLTALQH 277
Query: 329 INLSFTG---ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG-ARI 384
++L TG ++D L L+ L +L+ LNL +TD GL L L L HLDL +
Sbjct: 278 LDL--TGCFRVTDTGLAHLSPLVALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCWNL 335
Query: 385 TDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
TD+G A+LR L+ L + +TD G+ H+ L +L L+L Q LT L +
Sbjct: 336 TDAGLAHLRPLVALQHLNLTNCENITDVGLAHLTPLVALKHLDLMQCWKLTGNGLARLRS 395
Query: 444 LTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 479
L L LN+S S +T AGL HL+PL L+ L L +C
Sbjct: 396 LVALQHLNLSGCSYLTDAGLAHLRPLVALQHLDLANC 432
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 90/156 (57%), Gaps = 2/156 (1%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L ++L G D+TD+GL+HLK L+ LD C ++D GL HLR L L L+
Sbjct: 299 ALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCWNLTDAGLAHLRPLVALQHLNLTNCE 358
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
IT G+ L+ L LDL +C ++ G GL L+ L+ L+ LN+ C+ +TD+ + L
Sbjct: 359 NITDVGLAHLTPLVALKHLDLMQCWKLTGNGLARLRSLVALQHLNLSGCSYLTDAGLAHL 418
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNL 211
L L+ L ++ C ++TD+G+A+ K L T L+L
Sbjct: 419 RPLVALQHLDLANCYELTDAGLAHFKFLAATTHLDL 454
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 115/224 (51%), Gaps = 8/224 (3%)
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLG--FNEITDECLVHLKGLTNLESLNLDSC-GIGDEG 292
N L+D +LKVL+L +N TD L HL LT L+ L+L C + D G
Sbjct: 232 NNADLTDAHLLALKNCKNLKVLDLQECWN-FTDAGLAHLTPLTALQHLDLTGCFRVTDTG 290
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLK 351
L +L+ L L+ L L + +GL HL L L+ ++L ++D L L L +L+
Sbjct: 291 LAHLSPLVALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCWNLTDAGLAHLRPLVALQ 350
Query: 352 SLNL-DARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGL 408
LNL + ITD GLA LT L L HLDL ++T +G A LR+ L+ L + G L
Sbjct: 351 HLNLTNCENITDVGLAHLTPLVALKHLDLMQCWKLTGNGLARLRSLVALQHLNLSGCSYL 410
Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
TDAG+ H++ L +L L+L+ LTD L L L++
Sbjct: 411 TDAGLAHLRPLVALQHLDLANCYELTDAGLAHFKFLAATTHLDL 454
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
+L ++LSG S +TD+GL HL+ LQ LD C +++D GL H + L+ T L R
Sbjct: 398 ALQHLNLSGCSYLTDAGLAHLRPLVALQHLDLANCYELTDAGLAHFKFLAATTHLDLR 455
>gi|168054406|ref|XP_001779622.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668936|gb|EDQ55533.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 627
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 127/463 (27%), Positives = 213/463 (46%), Gaps = 67/463 (14%)
Query: 18 RCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIH 76
R +T+V L A R C L+ L L G+ D + +A+ L ++DLS ++V+D G+
Sbjct: 145 RDVTDVGLSALRRCTELRILGLKYCSGIGDSGIQNVATGCPQLRNIDLSFTEVSDKGVSS 204
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGL-INLV 134
L NL+ L CI ++D GL LR G +L L + + ++++G+ A G+ + L
Sbjct: 205 LALLKNLECLSIISCINVTDKGLSCLRSGCMSLQKLDVAKCSNVSSRGILALTGISLGLQ 264
Query: 135 KLDLERCTRIHG----------------------GLVNLK--GLMKLESLNIKWCNCITD 170
+L+L C +I G VNL G +L+ L++ C +TD
Sbjct: 265 ELNLSYCKKISDVLFASFQKLKTLQVVKLNGCAIGRVNLSLIGCKELKELSLSKCQGVTD 324
Query: 171 -SDMKPLSGLTNLKSLQISCSK-VTDSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
S + ++ T L+ L ++C + +TD + A + L L +E CP + + L+ +
Sbjct: 325 ASVVGVVTACTGLQKLDLTCCRDITDVALEAIAANCKGLLSLRMENCPSVTS--EGLTLI 382
Query: 228 GSLFY----LNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKG-LTNLESL 281
G F L+L L+D+G + S+ +++L LG+ +IT+ L + NL
Sbjct: 383 GRNFAHLEELDLTDSNLNDNGLKSISRCTEMRLLKLGYCMDITNAGLASISSTCKNLREF 442
Query: 282 N-LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDG 339
+ S GI D+G+ + C+ L+ +NLS+ I+D
Sbjct: 443 DCYRSVGISDDGVAAIARGCD-----------------------RLKVVNLSYCASITDA 479
Query: 340 SLRKLAGLSSLKSLNLDA-RQITDTGLAAL-TSLTGLTHLDLFGAR-ITDSGAAYL-RNF 395
SL LA L L L L A QIT G++ + S L LD+ R + D G L R
Sbjct: 480 SLHSLALLRDLVQLELRACSQITSVGISYIGASCKHLRELDIKRCRFVGDPGVLALSRGC 539
Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 438
+NLR + + LTD G+ + ++S + + L N+T +
Sbjct: 540 RNLRQINLSYTALTDLGMTAVANMSCIQDMKLVHMKNVTSDSF 582
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 136/498 (27%), Positives = 230/498 (46%), Gaps = 69/498 (13%)
Query: 44 VNDKWMDVIAS-QGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
V D+ + +A S LLS+ L + +G+ L +CS+LQ +D C QI D +
Sbjct: 70 VTDQCLATVAKFTNSRLLSIKLIRTKGFGIAGVKSLVECSSLQDVDVTHCTQIGDAEVIV 129
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L L +L L +T G+ A L RCT +L L
Sbjct: 130 LSKLKHLQKLKLNSCRDVTDVGLSA-----------LRRCT-------------ELRILG 165
Query: 162 IKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAA 219
+K+C+ I DS ++ ++ G L+++ +S ++V+D G++ L L+ L L++ C VT
Sbjct: 166 LKYCSGIGDSGIQNVATGCPQLRNIDLSFTEVSDKGVSSLALLKNLECLSIISCINVTDK 225
Query: 220 CLDSL-SALGSLFYLNLNRCQ-LSDDGCEKFSKIG-SLKVLNLGF-NEITDECLVHLKGL 275
L L S SL L++ +C +S G + I L+ LNL + +I+D + L
Sbjct: 226 GLSCLRSGCMSLQKLDVAKCSNVSSRGILALTGISLGLQELNLSYCKKISDVLFASFQKL 285
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ--VGSSGLRHLSGLTNLESINLSF 333
L+ + L+ C IG L +L G LK L LS Q +S + ++ T L+ ++L+
Sbjct: 286 KTLQVVKLNGCAIGRVNL-SLIGCKELKELSLSKCQGVTDASVVGVVTACTGLQKLDLTC 344
Query: 334 T-GISDGSLRKLAG---------------------------LSSLKSLNLDARQITDTGL 365
I+D +L +A + L+ L+L + D GL
Sbjct: 345 CRDITDVALEAIAANCKGLLSLRMENCPSVTSEGLTLIGRNFAHLEELDLTDSNLNDNGL 404
Query: 366 AALTSLTGLTHLDL-FGARITDSGAAYLRNF-KNLRSLEICGG-GLTDAGVKHI-KDLSS 421
+++ T + L L + IT++G A + + KNLR + G++D GV I +
Sbjct: 405 KSISRCTEMRLLKLGYCMDITNAGLASISSTCKNLREFDCYRSVGISDDGVAAIARGCDR 464
Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNV-SNSRITSAGLRHL-KPLKNLRSLTLESC 479
L ++NLS ++TD +L ++ L LV L + + S+ITS G+ ++ K+LR L ++ C
Sbjct: 465 LKVVNLSYCASITDASLHSLALLRDLVQLELRACSQITSVGISYIGASCKHLRELDIKRC 524
Query: 480 KVTANDIKRLQSRDLPNL 497
+ + SR NL
Sbjct: 525 RFVGDPGVLALSRGCRNL 542
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 100/360 (27%), Positives = 169/360 (46%), Gaps = 46/360 (12%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
++E L++ C +TD + ++ TN + L I + GIA +K
Sbjct: 58 QVEHLDLSSCVEVTDQCLATVAKFTNSRLLSIKLIRTKGFGIAGVK-------------- 103
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN---EITDECLVHL 272
SL SL +++ C D E + L N ++TD L L
Sbjct: 104 -------SLVECSSLQDVDVTHCTQIGDA-EVIVLSKLKHLQKLKLNSCRDVTDVGLSAL 155
Query: 273 KGLTNLESLNLDSC-GIGDEGLVNL-TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
+ T L L L C GIGD G+ N+ TG L+ ++LS T+V G+ L+ L NLE ++
Sbjct: 156 RRCTELRILGLKYCSGIGDSGIQNVATGCPQLRNIDLSFTEVSDKGVSSLALLKNLECLS 215
Query: 331 -LSFTGISDGSLRKL-AGLSSLKSLNL-DARQITDTGLAALTSLT-GLTHLDL-FGARIT 385
+S ++D L L +G SL+ L++ ++ G+ ALT ++ GL L+L + +I+
Sbjct: 216 IISCINVTDKGLSCLRSGCMSLQKLDVAKCSNVSSRGILALTGISLGLQELNLSYCKKIS 275
Query: 386 DSGAAYLRNFKNLRSLEI--CGGG---LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE- 439
D A + K L+ +++ C G L+ G K +K+LS LS+ +TD ++
Sbjct: 276 DVLFASFQKLKTLQVVKLNGCAIGRVNLSLIGCKELKELS------LSKCQGVTDASVVG 329
Query: 440 LISGLTGLVSLNVSNSR-ITSAGLRHLKP-LKNLRSLTLESCKVTANDIKRLQSRDLPNL 497
+++ TGL L+++ R IT L + K L SL +E+C ++ L R+ +L
Sbjct: 330 VVTACTGLQKLDLTCCRDITDVALEAIAANCKGLLSLRMENCPSVTSEGLTLIGRNFAHL 389
>gi|283778456|ref|YP_003369211.1| hypothetical protein Psta_0665 [Pirellula staleyi DSM 6068]
gi|283436909|gb|ADB15351.1| hypothetical protein Psta_0665 [Pirellula staleyi DSM 6068]
Length = 397
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 145/303 (47%), Gaps = 30/303 (9%)
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
G+ L G++ ++L G T C+D L + L +++++ +S G + + L
Sbjct: 104 EGVHQLHGIRDISL---HGRAFTDKCIDELIKVHQLRGVSISKTSISPAGLARLASCREL 160
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
++L EI D+ L + G+ +++ L + I DEGL + NL LE+ +
Sbjct: 161 VSISLWGPEIEDDHLKAVAGIPSVQHLQVIRSSITDEGLQHFAERENLATLEIYVAAITD 220
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
+GL+ L L L + L T ++D S+ + SL+ L LDA I+D GL L+ L
Sbjct: 221 AGLKSLVNLPKLRKLELLGTSVTDQSMPTIGRFRSLRQLRLDAHSISDEGLTFLSRNEKL 280
Query: 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
L + G I +G A L +NLR L DA S N N
Sbjct: 281 EVLLVSGCPIDGTGFAKLCELQNLR--------LVDAS---------------STNIN-- 315
Query: 435 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE-SCKVTANDIKRLQSRD 493
D+ L I+ L GL L + S++T GL+HL+ + LRSL + + ++T +D K L+++
Sbjct: 316 DEGLAAIASLPGLTLLEIRQSKVTGKGLQHLERSEQLRSLLISITDELTLDDAKALKAK- 374
Query: 494 LPN 496
LPN
Sbjct: 375 LPN 377
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 117/238 (49%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
TD + L + L+ + IS + ++ +G+A L ++L ++L G + L +++
Sbjct: 120 RAFTDKCIDELIKVHQLRGVSISKTSISPAGLARLASCRELVSISLWGPEIEDDHLKAVA 179
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
+ S+ +L + R ++D+G + F++ +L L + ITD L L L L L L
Sbjct: 180 GIPSVQHLQVIRSSITDEGLQHFAERENLATLEIYVAAITDAGLKSLVNLPKLRKLELLG 239
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
+ D+ + + +L+ L L + GL LS LE + +S I KL
Sbjct: 240 TSVTDQSMPTIGRFRSLRQLRLDAHSISDEGLTFLSRNEKLEVLLVSGCPIDGTGFAKLC 299
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
L +L+ ++ + I D GLAA+ SL GLT L++ +++T G +L + LRSL I
Sbjct: 300 ELQNLRLVDASSTNINDEGLAAIASLPGLTLLEIRQSKVTGKGLQHLERSEQLRSLLI 357
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 139/311 (44%), Gaps = 25/311 (8%)
Query: 40 QYPGVND---------KWMDVIASQ--GSSLLSVDL----SGSDVTDSGLIH-LKDCSNL 83
+YP V D +W+ + + G+++L+V SG D+ +H ++D S L
Sbjct: 59 EYPNVIDGSIQQSNQPRWLRYLFGENFGANVLTVTARGTSSGDDIEGVHQLHGIRDIS-L 117
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143
F +D ++ L + L +S + +I+ G+ A LV + L
Sbjct: 118 HGRAF------TDKCIDELIKVHQLRGVSISKT-SISPAGLARLASCRELVSISLWGPEI 170
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
L + G+ ++ L + + ITD ++ + NL +L+I + +TD+G+ L L
Sbjct: 171 EDDHLKAVAGIPSVQHLQVI-RSSITDEGLQHFAERENLATLEIYVAAITDAGLKSLVNL 229
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
KL L L G VT + ++ SL L L+ +SD+G S+ L+VL +
Sbjct: 230 PKLRKLELLGTSVTDQSMPTIGRFRSLRQLRLDAHSISDEGLTFLSRNEKLEVLLVSGCP 289
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
I L L NL ++ S I DEGL + L L LE+ ++V GL+HL
Sbjct: 290 IDGTGFAKLCELQNLRLVDASSTNINDEGLAAIASLPGLTLLEIRQSKVTGKGLQHLERS 349
Query: 324 TNLESINLSFT 334
L S+ +S T
Sbjct: 350 EQLRSLLISIT 360
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 96/208 (46%), Gaps = 1/208 (0%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
GL L +L S+++ W I D +K ++G+ +++ LQ+ S +TD G+ + +
Sbjct: 149 AGLARLASCRELVSISL-WGPEIEDDHLKAVAGIPSVQHLQVIRSSITDEGLQHFAEREN 207
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L + +T A L SL L L L L ++D + SL+ L L + I+
Sbjct: 208 LATLEIYVAAITDAGLKSLVNLPKLRKLELLGTSVTDQSMPTIGRFRSLRQLRLDAHSIS 267
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
DE L L LE L + C I G L L NL+ ++ S T + GL ++ L
Sbjct: 268 DEGLTFLSRNEKLEVLLVSGCPIDGTGFAKLCELQNLRLVDASSTNINDEGLAAIASLPG 327
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSL 353
L + + + ++ L+ L L+SL
Sbjct: 328 LTLLEIRQSKVTGKGLQHLERSEQLRSL 355
>gi|149173736|ref|ZP_01852365.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148847266|gb|EDL61600.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 496
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 148/309 (47%), Gaps = 7/309 (2%)
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT-AACLDSLSALGSLFYLNL 235
GL + + + +++TD G+ YL L L LNL+ VT A L L L L L+L
Sbjct: 116 PGLRPVPAANVRRNQITDRGLGYLTELSSLRSLNLQATRVTDAGLLQYLPELPRLQRLSL 175
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT--NLESLNLDSCGIGDEGL 293
++D + L+ +NLG +++E +++L G +L LNL + + D+ L
Sbjct: 176 ACLDITDAALLALESLAWLESINLGHTAVSNEAILNLVGAKAFSLRRLNLSNTAVNDQAL 235
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L LELSDT + + + L + L+FT I+D +R LA L+ L
Sbjct: 236 AECLPDSQLNKLELSDTGITDAACQSCVECEWLTDLCLNFTDITDDGVRHLANCGHLRKL 295
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
L +ITDT L L +G+ L L ITD+G L +F L SL++ LTD G+
Sbjct: 296 ELFKTKITDTSLVWLAD-SGIEDLGLGFTAITDAGIPALTDFPALESLDLQKTSLTDKGL 354
Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 473
+ + + ++L L L N ++ +E + L N I +AGL L +LR+
Sbjct: 355 RFLSEATNLKQLQLD-NTEISHAGIEFLLSLPLESL--SLNPGIDNAGLNTLVRHNSLRN 411
Query: 474 LTLESCKVT 482
L + +C VT
Sbjct: 412 LAIWNCNVT 420
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 95/342 (27%), Positives = 158/342 (46%), Gaps = 48/342 (14%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL---------------- 211
+ + D++ L ++L + + ++D+G+ ++ ++ L L L
Sbjct: 40 VANEDLRHLIFYPGFEALILDNTSISDAGLNFIGEMRNLERLGLYDTLVSDDGLKPLLKL 99
Query: 212 -----------EGC------PVTAA----------CLDSLSALGSLFYLNLNRCQLSDDG 244
GC PV AA L L+ L SL LNL +++D G
Sbjct: 100 SKLEKLNIACAPGCLSPGLRPVPAANVRRNQITDRGLGYLTELSSLRSLNLQATRVTDAG 159
Query: 245 CEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG--LCN 301
++ ++ L+ L+L +ITD L+ L+ L LES+NL + +E ++NL G +
Sbjct: 160 LLQYLPELPRLQRLSLACLDITDAALLALESLAWLESINLGHTAVSNEAILNLVGAKAFS 219
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
L+ L LS+T V L + L + LS TGI+D + + L L L+ IT
Sbjct: 220 LRRLNLSNTAVNDQALAECLPDSQLNKLELSDTGITDAACQSCVECEWLTDLCLNFTDIT 279
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421
D G+ L + L L+LF +ITD+ +L + + L + +TDAG+ + D +
Sbjct: 280 DDGVRHLANCGHLRKLELFKTKITDTSLVWLAD-SGIEDLGLGFTAITDAGIPALTDFPA 338
Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
L L+L Q +LTDK L +S T L L + N+ I+ AG+
Sbjct: 339 LESLDL-QKTSLTDKGLRFLSEATNLKQLQLDNTEISHAGIE 379
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 111/229 (48%), Gaps = 7/229 (3%)
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
++NL +E+ +E L HL E+L LD+ I D GL + + NL+ L L DT V
Sbjct: 32 LVNLMNSEVANEDLRHLIFYPGFEALILDNTSISDAGLNFIGEMRNLERLGLYDTLVSDD 91
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
GL+ L L+ LE +N++ + G L GL + + N+ QITD GL LT L+ L
Sbjct: 92 GLKPLLKLSKLEKLNIA---CAPGCLSP--GLRPVPAANVRRNQITDRGLGYLTELSSLR 146
Query: 376 HLDLFGARITDSG-AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
L+L R+TD+G YL L+ L + +TDA + ++ L+ L +NL
Sbjct: 147 SLNLQATRVTDAGLLQYLPELPRLQRLSLACLDITDAALLALESLAWLESINLGHTAVSN 206
Query: 435 DKTLELISGLT-GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
+ L L+ L LN+SN+ + L P L L L +T
Sbjct: 207 EAILNLVGAKAFSLRRLNLSNTAVNDQALAECLPDSQLNKLELSDTGIT 255
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 98/357 (27%), Positives = 154/357 (43%), Gaps = 48/357 (13%)
Query: 57 SSLLSVDLSGSDVTDSGLI-HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
SSL S++L + VTD+GL+ +L + LQ L C+ I+D L L L+ L S+
Sbjct: 143 SSLRSLNLQATRVTDAGLLQYLPELPRLQRLSLA-CLDITDAALLALESLAWLESI---- 197
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N TA +A L+ L R + VN + L + C+ DS
Sbjct: 198 NLGHTAVSNEAILNLVGAKAFSLRRLN-LSNTAVNDQALAE----------CLPDS---- 242
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L L++S + +TD+ + LT L L +T + L+ G L L L
Sbjct: 243 -----QLNKLELSDTGITDAACQSCVECEWLTDLCLNFTDITDDGVRHLANCGHLRKLEL 297
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
+ +++D + G ++ L LGF ITD + L LESL+L + D+GL
Sbjct: 298 FKTKITDTSLVWLADSG-IEDLGLGFTAITDAGIPALTDFPALESLDLQKTSLTDKGLRF 356
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
L+ NLK L+L +T++ +G+ L L GI + L L +SL++L +
Sbjct: 357 LSEATNLKQLQLDNTEISHAGIEFLLSLP--LESLSLNPGIDNAGLNTLVRHNSLRNLAI 414
Query: 356 DARQITD-------------------TGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
+T+ T L+ L L L +L L+G R + + A LR
Sbjct: 415 WNCNVTNWQPLMKLELLEVLLIDDSVTDLSPLRELDQLKYLLLWGDRFSPTELARLR 471
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 16/189 (8%)
Query: 15 VYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGL 74
++ +T+ SL D ++DL LG + + D + + + +L S+DL + +TD GL
Sbjct: 297 LFKTKITDTSLVWLADSGIEDLGLG-FTAITDAGIPAL-TDFPALESLDLQKTSLTDKGL 354
Query: 75 IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
L + +NL+ L + +IS G+E L +L S N I G+ +L
Sbjct: 355 RFLSEATNLKQLQLDN-TEISHAGIEF---LLSLPLESLSLNPGIDNAGLNTLVRHNSLR 410
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKV 192
L + C + N + LMKLE L + I DS D+ PL L LK L + +
Sbjct: 411 NLAIWNC-----NVTNWQPLMKLELLEVL---LIDDSVTDLSPLRELDQLKYLLLWGDRF 462
Query: 193 TDSGIAYLK 201
+ + +A L+
Sbjct: 463 SPTELARLR 471
>gi|290972542|ref|XP_002669011.1| predicted protein [Naegleria gruberi]
gi|284082551|gb|EFC36267.1| predicted protein [Naegleria gruberi]
Length = 335
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 147/288 (51%), Gaps = 7/288 (2%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L L +L+I C+ I D +S L +K L+ + + G + ++ LTLL L G
Sbjct: 39 LSNLTNLSINRCS-IADLGTNNISQLKQIKYLRACENGIGSIGARNIGEMKNLTLLELSG 97
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD-ECLVHL 272
+ L+S+ L L YL+L +++D G + + + L LNL N+IT+ E + HL
Sbjct: 98 NRIGDDGLESIGKLSKLAYLDLGENEITDQGLKSLNNLEKLVTLNLKNNKITNLETISHL 157
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
K LTNL+ + + IG+EG + + LK L ++D + S G + LSG+T L I L
Sbjct: 158 K-LTNLD---VTTNKIGNEGAKYIAEMKRLKVLRINDNHITSDGAKILSGMTQLTCIFLC 213
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
I D + L +L+ L+L IT GL + L L L + +I+D GA Y+
Sbjct: 214 DNLIGDEGALSIGLLYNLEYLDLKGAGITGEGLKTICELINLRRLHVSHNQISDLGAKYI 273
Query: 393 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
NL +L +C + G + I ++ SL L++++N NLT ++L
Sbjct: 274 SGMNNLTALNVCDCNIGFEGAQFISNMQSLADLDITKN-NLTTNGIKL 320
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 89/316 (28%), Positives = 153/316 (48%), Gaps = 6/316 (1%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ +S + L L I+ S++T + L LT L++ C + +++S L + Y
Sbjct: 9 INEISNHSKLTELCINSSELTPQSAHLIAKLSNLTNLSINRCSIADLGTNNISQLKQIKY 68
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L + G ++ +L +L L N I D+ L + L+ L L+L I D+G
Sbjct: 69 LRACENGIGSIGARNIGEMKNLTLLELSGNRIGDDGLESIGKLSKLAYLDLGENEITDQG 128
Query: 293 LVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
L +L L L L L + ++ + + HL LTNL+ ++ I + + +A + LK
Sbjct: 129 LKSLNNLEKLVTLNLKNNKITNLETISHLK-LTNLD---VTTNKIGNEGAKYIAEMKRLK 184
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
L ++ IT G L+ +T LT + L I D GA + NL L++ G G+T
Sbjct: 185 VLRINDNHITSDGAKILSGMTQLTCIFLCDNLIGDEGALSIGLLYNLEYLDLKGAGITGE 244
Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 471
G+K I +L +L L++S N ++D + ISG+ L +LNV + I G + + +++L
Sbjct: 245 GLKTICELINLRRLHVSHN-QISDLGAKYISGMNNLTALNVCDCNIGFEGAQFISNMQSL 303
Query: 472 RSLTLESCKVTANDIK 487
L + +T N IK
Sbjct: 304 ADLDITKNNLTTNGIK 319
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 89/334 (26%), Positives = 160/334 (47%), Gaps = 32/334 (9%)
Query: 96 DGGLEHLRGLSNLTSLSFR--RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
D LE + +SN + L+ ++ +T Q A L NL L + RC+ G N+
Sbjct: 3 DCNLETINEISNHSKLTELCINSSELTPQSAHLIAKLSNLTNLSINRCSIADLGTNNISQ 62
Query: 154 LMKLESLNIKWC-------------------------NCITDSDMKPLSGLTNLKSLQIS 188
L +++ L + C N I D ++ + L+ L L +
Sbjct: 63 LKQIKYL--RACENGIGSIGARNIGEMKNLTLLELSGNRIGDDGLESIGKLSKLAYLDLG 120
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+++TD G+ L L+KL LNL+ +T L+++S L L L++ ++ ++G +
Sbjct: 121 ENEITDQGLKSLNNLEKLVTLNLKNNKITN--LETISHL-KLTNLDVTTNKIGNEGAKYI 177
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
+++ LKVL + N IT + L G+T L + L IGDEG +++ L NL+ L+L
Sbjct: 178 AEMKRLKVLRINDNHITSDGAKILSGMTQLTCIFLCDNLIGDEGALSIGLLYNLEYLDLK 237
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
+ GL+ + L NL +++S ISD + ++G+++L +LN+ I G +
Sbjct: 238 GAGITGEGLKTICELINLRRLHVSHNQISDLGAKYISGMNNLTALNVCDCNIGFEGAQFI 297
Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
+++ L LD+ +T +G RN K + L+
Sbjct: 298 SNMQSLADLDITKNNLTTNGIKLCRNMKTSKKLK 331
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 119/228 (52%), Gaps = 6/228 (2%)
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
E+T + + L+NL +L+++ C I D G N++ L +K L + +GS G R++
Sbjct: 27 ELTPQSAHLIAKLSNLTNLSINRCSIADLGTNNISQLKQIKYLRACENGIGSIGARNIGE 86
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
+ NL + LS I D L + LS L L+L +ITD GL +L +L L L+L
Sbjct: 87 MKNLTLLELSGNRIGDDGLESIGKLSKLAYLDLGENEITDQGLKSLNNLEKLVTLNLKNN 146
Query: 383 RITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
+IT+ ++L+ L +L++ + + G K+I ++ L +L ++ N ++T +++
Sbjct: 147 KITNLETISHLK----LTNLDVTTNKIGNEGAKYIAEMKRLKVLRINDN-HITSDGAKIL 201
Query: 442 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
SG+T L + + ++ I G + L NL L L+ +T +K +
Sbjct: 202 SGMTQLTCIFLCDNLIGDEGALSIGLLYNLEYLDLKGAGITGEGLKTI 249
>gi|18378037|emb|CAD21749.1| hypothetical leucine-rich repeat protein 1, LRRP1 [Trypanosoma
brucei]
Length = 1394
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 146/529 (27%), Positives = 221/529 (41%), Gaps = 98/529 (18%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L G+N W + Q L L + +TD + H +C NL +LD +FC
Sbjct: 556 ALNELNLSNCFGINAGWEAIEKLQ--QLHVAILPNTHITDRDISHFSNCKNLVTLDLSFC 613
Query: 92 IQISDGGLEHLRGLSNLTSLS-------------------FRRNNAITAQGMKAFAGLI- 131
++ D + LSN+T+L R + +G+ +I
Sbjct: 614 NKLLD-----VTTLSNITTLEDLNLDNCSNIRKGLSVLGELPRLCVLNIKGVHLKDSVIG 668
Query: 132 ------NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+ VKL LE C + G + L L+ LE LN+ +C+ +T S M L L L+ L
Sbjct: 669 SLGNGNSFVKLSLENC-KGFGDVKPLSNLVTLEELNLHYCDKVT-SGMGTLGRLLQLRVL 726
Query: 186 QI--------------------------SCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTA 218
+ C K+T S IA L L++L N++ C
Sbjct: 727 DLGRTQVDNNSLENICTSSSPLVSLNLSHCKKITSISAIASLTALEEL---NIDNCCNVT 783
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTN 277
+ + L L L+ +++D+ S+ SL LNL F +ITD + L +T
Sbjct: 784 SGWNVFGTLHQLRVATLSNTRINDENVRHVSECKSLNTLNLAFCKDITD--VTALSKITM 841
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
LE LNLD C +G+ L L + L + + Q+G S + S L N +S+ S
Sbjct: 842 LEELNLDCCPNIRKGIETLGTLPKARILSMKECQIGDSDAQQCSILGNSKSLVKLNLERS 901
Query: 338 DG--SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
G S++ L+ +++L+ L LD Q + + S + L HL + + TD
Sbjct: 902 RGRISVKALSNIATLEELVLDHAQ----EVCCIPSFSCLPHLRVLNVKYTD--------- 948
Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 455
G +T K+I + SL LLNLS +TD + ++S L+ L LNV
Sbjct: 949 --------INGDVT----KNISESKSLRLLNLSHCKWVTD--ISVLSSLSTLEKLNVKCC 994
Query: 456 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNLVSFRPE 503
G L L LR L +TA DI L S + L L FR E
Sbjct: 995 NGIRKGWESLGKLPLLRVAILSDTNITAKDIACLSSCKTLVKLKFFRCE 1043
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 110/414 (26%), Positives = 182/414 (43%), Gaps = 56/414 (13%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
++A A ++ L KL L CT I G+ L L +L+ L++ N +S ++ L +
Sbjct: 477 VEALANILTLEKLSLHGCTDIDAGIGCLGNLPQLKMLDLSGTNTDNES-LRSLCLSQTMV 535
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
SL +S C K+T+ ++++ L+ L LNL C A +++ L L L ++D
Sbjct: 536 SLNLSHCWKMTN--VSHISSLEALNELNLSNCFGINAGWEAIEKLQQLHVAILPNTHITD 593
Query: 243 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV---NLTG 298
FS +L L+L F N++ D + L +T LE LNLD+C +GL L
Sbjct: 594 RDISHFSNCKNLVTLDLSFCNKLLD--VTTLSNITTLEDLNLDNCSNIRKGLSVLGELPR 651
Query: 299 LC--NLKCLELSDTQVGSSG------------------LRHLSGLTNLESINLSFTGISD 338
LC N+K + L D+ +GS G ++ LS L LE +NL +
Sbjct: 652 LCVLNIKGVHLKDSVIGSLGNGNSFVKLSLENCKGFGDVKPLSNLVTLEELNLHYCDKVT 711
Query: 339 GSLRKLAGLSSLKSLNLDARQITD------------------------TGLAALTSLTGL 374
+ L L L+ L+L Q+ + T ++A+ SLT L
Sbjct: 712 SGMGTLGRLLQLRVLDLGRTQVDNNSLENICTSSSPLVSLNLSHCKKITSISAIASLTAL 771
Query: 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
L++ SG LR + + D V+H+ + SL LNL+ ++T
Sbjct: 772 EELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRINDENVRHVSECKSLNTLNLAFCKDIT 831
Query: 435 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
D T +S +T L LN+ G+ L L R L+++ C++ +D ++
Sbjct: 832 DVT--ALSKITMLEELNLDCCPNIRKGIETLGTLPKARILSMKECQIGDSDAQQ 883
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 118/433 (27%), Positives = 193/433 (44%), Gaps = 39/433 (9%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I + HL + L L+ +T ++ + L NL+ LDL + +
Sbjct: 189 IDNNDARHLFNIGTLEKLAITDTMQLT--NIRGISRLTNLMCLDLNSTNIDDSCVRRICA 246
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLE 212
+KL L++ CN ITD+ P+S L L+ L + SC +T GI L L +L +L+L
Sbjct: 247 CVKLSKLSVSECNNITDA--TPISQLEALEELNLNSCYHIT-KGIGTLGMLLRLRILDLS 303
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRC-QLSD---------------DGCEKFSK------ 250
G PV CL L GSL LN++ C QL D +GC + ++
Sbjct: 304 GVPVEDNCLKGLCDCGSLERLNISYCIQLKDINPLSNATATEELNLNGCRRITRGIGVVW 363
Query: 251 -IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELS 308
+ L+VL++ +++ L + L ++LD+C G GD L L+ + L+ L +
Sbjct: 364 ALPKLRVLHMKDVHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTL--LSSIVTLEELNIQ 421
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAA 367
SG+ L L L +N+ IS + SL LN+++ IT + + A
Sbjct: 422 KCADIISGVGCLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLNMES--ITGLSNVEA 479
Query: 368 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
L ++ L L L G D+G L N L+ L++ G + ++ + ++ LNL
Sbjct: 480 LANILTLEKLSLHGCTDIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTMVSLNL 539
Query: 428 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 487
S +T+ + IS L L LN+SN +AG ++ L+ L L + +T DI
Sbjct: 540 SHCWKMTN--VSHISSLEALNELNLSNCFGINAGWEAIEKLQQLHVAILPNTHITDRDIS 597
Query: 488 RLQSRDLPNLVSF 500
+ NLV+
Sbjct: 598 HFS--NCKNLVTL 608
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 107/377 (28%), Positives = 173/377 (45%), Gaps = 29/377 (7%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ + L L KL+++ C I G +L G + L + I IT D+ LS L
Sbjct: 977 ISVLSSLSTLEKLNVKCCNGIRKGWESL-GKLPLLRVAILSDTNITAKDIACLSSCKTLV 1035
Query: 184 SLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L+ C K++D + Y +Q L L + C L++L L L +L+L + SD
Sbjct: 1036 KLKFFRCEKLSDVTVVY--KIQSLEELMVRSCSDGLKGLNALGTLPRLRFLHLRNLKGSD 1093
Query: 243 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
E SL LN+ E+T+ L +T+LE L+L CG EG+ L L
Sbjct: 1094 ISVESIGTSKSLVRLNIEMREELTNA--TPLSNITSLEELSLRDCGDNLEGVGTLGKLPR 1151
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQI 360
LK L+L +++ L + ++ S+NL+ + ++D S ++ L++L+ +NL
Sbjct: 1152 LKSLDLGLSRISDDTLDDICLSRSITSLNLASSWKLTDIS--HISNLTALEEMNLSGCYP 1209
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDS-GAAYLRNFKNLRSLEICGGGLTDAG-VKHIKD 418
++G AL+ L L ++L A +T Y+ K L +L I +TDA + +IK
Sbjct: 1210 INSGWKALSELPRLRVVNLESASVTTRYDGYYISRCKYLVTLNIQLSDMTDASYIANIKT 1269
Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVS------LNVSNSRITSAGLRHLKPLKNLR 472
L L + K+ EL G + L + L++ SRIT LR ++P +
Sbjct: 1270 LEELRI----------GKSKELTQGFSALFTLPRLRILDLFMSRITDEDLREIQPPHTIE 1319
Query: 473 SLTLESCKVTANDIKRL 489
L L C+ NDI L
Sbjct: 1320 ELNLSYCE-ELNDITPL 1335
>gi|299065269|emb|CBJ36437.1| leucine-rich-repeat type III effector protein (GALA8) [Ralstonia
solanacearum CMR15]
Length = 524
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 115/381 (30%), Positives = 172/381 (45%), Gaps = 6/381 (1%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR----RNNAITAQGMKAFAGLINLVKL 136
++++ +D + C S + GL L L ++ +T+ G +A A L L
Sbjct: 103 ASVRHIDLSGCNATSSTSATSVAGLKYLAKLPITSLVIQDAGMTSVGARALAASDTLTSL 162
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
DL G L L +LN+ N I + L+ L +L + +K+ D+G
Sbjct: 163 DLRGNKITDLGAQALATSRTLTTLNLD-TNTIGAKGAQALAASRTLTTLNLRGNKIEDAG 221
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
L LT L+ EGC + A + +L+A SL LNL + D G + + +L
Sbjct: 222 AQALAASTTLTSLSAEGCRIGLAGVQALAASRSLTTLNLAGNNIDDAGAQALAASRTLTT 281
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
L+L N+I D + L L SL +D C IG G L +L L +S VG +G
Sbjct: 282 LDLSANKIGDAGALALAASRTLASLEVDHCEIGAAGAQALATSDSLAALNISHNPVGDAG 341
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
+ L+ L SI I + LA SL SL+LDA QI D G AL + LT
Sbjct: 342 AQALAICRTLTSIKAKDCQIGAAGAQALAASDSLTSLDLDANQIGDDGAQALATSNTLTS 401
Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436
L++ I D G L + L SL++ + V+ + + +LT LN+S N N+ D
Sbjct: 402 LNVRYNTIGDLGVQALAANRLLESLDVSDNKIGITSVQALAENCTLTSLNVSGN-NIGDA 460
Query: 437 TLELISGLTGLVSLNVSNSRI 457
+L++ L SLNV SRI
Sbjct: 461 GAQLLAANRSLTSLNVCWSRI 481
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 168/359 (46%), Gaps = 3/359 (0%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L S+DL G+ +TD G L L +L+ + I G + L LT+L+ R N
Sbjct: 158 TLTSLDLRGNKITDLGAQALATSRTLTTLNLDTNT-IGAKGAQALAASRTLTTLNLR-GN 215
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I G +A A L L E C G+ L L +LN+ N I D+ + L+
Sbjct: 216 KIEDAGAQALAASTTLTSLSAEGCRIGLAGVQALAASRSLTTLNLA-GNNIDDAGAQALA 274
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L +L +S +K+ D+G L + L L ++ C + AA +L+ SL LN++
Sbjct: 275 ASRTLTTLDLSANKIGDAGALALAASRTLASLEVDHCEIGAAGAQALATSDSLAALNISH 334
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+ D G + + +L + +I L +L SL+LD+ IGD+G L
Sbjct: 335 NPVGDAGAQALAICRTLTSIKAKDCQIGAAGAQALAASDSLTSLDLDANQIGDDGAQALA 394
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
L L + +G G++ L+ LES+++S I S++ LA +L SLN+
Sbjct: 395 TSNTLTSLNVRYNTIGDLGVQALAANRLLESLDVSDNKIGITSVQALAENCTLTSLNVSG 454
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
I D G L + LT L++ +RI D+GA L ++L SL++ + +AG + +
Sbjct: 455 NNIGDAGAQLLAANRSLTSLNVCWSRIGDAGALALAANRSLTSLDVSVNRIGEAGARAL 513
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 126/463 (27%), Positives = 199/463 (42%), Gaps = 43/463 (9%)
Query: 4 RDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPG------VNDKWMDVIASQGS 57
R IS ++ N + + +T +++ L L G YP V + + + + +
Sbjct: 48 RSISHELHN--ITNATITGLTIT--DPSGLNRLSRGDYPKLQSVRLVGNFTVQDLKALPA 103
Query: 58 SLLSVDLSGSDVTDS-GLIHLKDCSNLQSLDFNFCIQISDGGLEHL--RGLS---NLTSL 111
S+ +DLSG + T S + L L + I D G+ + R L+ LTSL
Sbjct: 104 SVRHIDLSGCNATSSTSATSVAGLKYLAKLPITSLV-IQDAGMTSVGARALAASDTLTSL 162
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
R N IT G +A A L L+L+ T G L L +LN++ N I D+
Sbjct: 163 DLR-GNKITDLGAQALATSRTLTTLNLDTNTIGAKGAQALAASRTLTTLNLR-GNKIEDA 220
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
+ L+ T L SL ++ +G+ L + LT LNL G + A +L+A +L
Sbjct: 221 GAQALAASTTLTSLSAEGCRIGLAGVQALAASRSLTTLNLAGNNIDDAGAQALAASRTLT 280
Query: 232 YLNL------------------------NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L+L + C++ G + + SL LN+ N + D
Sbjct: 281 TLDLSANKIGDAGALALAASRTLASLEVDHCEIGAAGAQALATSDSLAALNISHNPVGDA 340
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
L L S+ C IG G L +L L+L Q+G G + L+ L
Sbjct: 341 GAQALAICRTLTSIKAKDCQIGAAGAQALAASDSLTSLDLDANQIGDDGAQALATSNTLT 400
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
S+N+ + I D ++ LA L+SL++ +I T + AL LT L++ G I D+
Sbjct: 401 SLNVRYNTIGDLGVQALAANRLLESLDVSDNKIGITSVQALAENCTLTSLNVSGNNIGDA 460
Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
GA L ++L SL +C + DAG + SLT L++S N
Sbjct: 461 GAQLLAANRSLTSLNVCWSRIGDAGALALAANRSLTSLDVSVN 503
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 105/250 (42%), Gaps = 28/250 (11%)
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC-----NLKCLELSDTQVGS 314
G N + + GL L L + S I D G+ ++ L L+L ++
Sbjct: 112 GCNATSSTSATSVAGLKYLAKLPITSLVIQDAGMTSVGARALAASDTLTSLDLRGNKITD 171
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
G + L+ L ++NL I + LA +L +LNL +I D G AL + T L
Sbjct: 172 LGAQALATSRTLTTLNLDTNTIGAKGAQALAASRTLTTLNLRGNKIEDAGAQALAASTTL 231
Query: 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN---- 430
T L G RI +G L ++L +L + G + DAG + + +LT L+LS N
Sbjct: 232 TSLSAEGCRIGLAGVQALAASRSLTTLNLAGNNIDDAGAQALAASRTLTTLDLSANKIGD 291
Query: 431 -------------------CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 471
C + + ++ L +LN+S++ + AG + L + L
Sbjct: 292 AGALALAASRTLASLEVDHCEIGAAGAQALATSDSLAALNISHNPVGDAGAQALAICRTL 351
Query: 472 RSLTLESCKV 481
S+ + C++
Sbjct: 352 TSIKAKDCQI 361
>gi|149175637|ref|ZP_01854257.1| putative serine/threonine-protein kinase [Planctomyces maris DSM
8797]
gi|148845622|gb|EDL59965.1| putative serine/threonine-protein kinase [Planctomyces maris DSM
8797]
Length = 718
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 109/200 (54%), Gaps = 10/200 (5%)
Query: 228 GSLFYLNLNRCQLSDDG-CEKFSKIGSLKVLNLGFNEI-------TDECLVHLKGLTNLE 279
+++ LN ++C++ DG E +++ L V++ EI T E + LKGL LE
Sbjct: 510 AAVWLLN-HQCEIIIDGRYEPVTQVQELPVVDFYIREIKFHPQTITREVMAPLKGLAKLE 568
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISD 338
+L+L+ C + D+ L L G LK L+L +T + ++GL H+S L NL ++L I+D
Sbjct: 569 TLHLEDCHVMDDALAPLEGKLTLKTLDLHETGLTNAGLSHISSLLNLTHLSLQKNREITD 628
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
L+ LA L L S+NLD ITD G+ + L L++ +I+D+ L +
Sbjct: 629 EGLQALANLKKLSSINLDRLNITDEGITFIKHNPRLDWLNIKDTQISDTSIPLLIKLNRM 688
Query: 399 RSLEICGGGLTDAGVKHIKD 418
++L + G +TD G++ IK+
Sbjct: 689 KNLYLEGSKITDQGIQKIKN 708
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 93/181 (51%), Gaps = 4/181 (2%)
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
R Q + I +K + TR + LKGL KLE+L+++ C+ + D+ +
Sbjct: 526 RYEPVTQVQELPVVDFYIREIKFHPQTITR--EVMAPLKGLAKLETLHLEDCHVMDDA-L 582
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE-GCPVTAACLDSLSALGSLFY 232
PL G LK+L + + +T++G++++ L LT L+L+ +T L +L+ L L
Sbjct: 583 APLEGKLTLKTLDLHETGLTNAGLSHISSLLNLTHLSLQKNREITDEGLQALANLKKLSS 642
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
+NL+R ++D+G L LN+ +I+D + L L +++L L+ I D+G
Sbjct: 643 INLDRLNITDEGITFIKHNPRLDWLNIKDTQISDTSIPLLIKLNRMKNLYLEGSKITDQG 702
Query: 293 L 293
+
Sbjct: 703 I 703
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 79/146 (54%), Gaps = 2/146 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L ++ L V D L L+ L++LD + +++ GL H+ L NLT LS ++N
Sbjct: 565 AKLETLHLEDCHVMDDALAPLEGKLTLKTLDLHET-GLTNAGLSHISSLLNLTHLSLQKN 623
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
IT +G++A A L L ++L+R G+ +K +L+ LNIK I+D+ + L
Sbjct: 624 REITDEGLQALANLKKLSSINLDRLNITDEGITFIKHNPRLDWLNIK-DTQISDTSIPLL 682
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKG 202
L +K+L + SK+TD GI +K
Sbjct: 683 IKLNRMKNLYLEGSKITDQGIQKIKN 708
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 8/191 (4%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFR------RNNAITAQGMKAFAGLINLVKLDLERCTRI 144
C I DG E + + L + F IT + M GL L L LE C +
Sbjct: 519 CEIIIDGRYEPVTQVQELPVVDFYIREIKFHPQTITREVMAPLKGLAKLETLHLEDCHVM 578
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGL 203
L L+G + L++L++ +T++ + +S L NL L + ++ +TD G+ L L
Sbjct: 579 DDALAPLEGKLTLKTLDLHETG-LTNAGLSHISSLLNLTHLSLQKNREITDEGLQALANL 637
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
+KL+ +NL+ +T + + L +LN+ Q+SD K+ +K L L ++
Sbjct: 638 KKLSSINLDRLNITDEGITFIKHNPRLDWLNIKDTQISDTSIPLLIKLNRMKNLYLEGSK 697
Query: 264 ITDECLVHLKG 274
ITD+ + +K
Sbjct: 698 ITDQGIQKIKN 708
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 7/161 (4%)
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQI-------TDTGLAALTSLTGLTHLDLFGARITDSG 388
I DG + + L ++ R+I T +A L L L L L + D
Sbjct: 522 IIDGRYEPVTQVQELPVVDFYIREIKFHPQTITREVMAPLKGLAKLETLHLEDCHVMDDA 581
Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
A L L++L++ GLT+AG+ HI L +LT L+L +N +TD+ L+ ++ L L
Sbjct: 582 LAPLEGKLTLKTLDLHETGLTNAGLSHISSLLNLTHLSLQKNREITDEGLQALANLKKLS 641
Query: 449 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
S+N+ IT G+ +K L L ++ +++ I L
Sbjct: 642 SINLDRLNITDEGITFIKHNPRLDWLNIKDTQISDTSIPLL 682
>gi|359464005|ref|ZP_09252568.1| internalin A protein [Acaryochloris sp. CCMEE 5410]
Length = 624
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 155/543 (28%), Positives = 253/543 (46%), Gaps = 98/543 (18%)
Query: 23 VSLEAFRDCALQDLCLGQYPGVNDKWM-DVIASQGSSLLS------VDLSGSDVTDSGLI 75
+SL+ L D + QYP ++ ++ D+++ + S + LSG DVT +
Sbjct: 55 LSLQGVDGHELVDASIEQYPHLSALYLFDIVSPEIVPFASLPGLSTIALSGQDVTATS-- 112
Query: 76 HLKDCSNLQSL--------DFNFCI-------------QISDGGLEHLRGLSNLTSLSFR 114
+L+ +NL ++ D++F QI+D + ++ L LTSL
Sbjct: 113 YLQQATNLTTVYLKTTHISDYSFLSDLKNLTHLDLSNNQIAD--ISFIQDLKQLTSLGLA 170
Query: 115 RNNAITAQGMK----------------AFAGLINLVKL-DLERCTRIHGGLVNLKGLMKL 157
N + G+K ++ L+N +L L R GL L+ L L
Sbjct: 171 ANKIVDISGLKDLTTLNSLNLRSNAIDDYSVLLNFKELSQLTVSVREATGLAFLQDLRGL 230
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
L++ + + I SD+ L L L L + ++++D IA L L +LT L+L ++
Sbjct: 231 TYLDLSYNHWI--SDISVLRHLPKLTHLDLGSNQISD--IAVLSDLPQLTHLSLSANKIS 286
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
L L L L L+++ +++D + L L++ N+++D + L+ LT
Sbjct: 287 D--LSVLQTLQGLESLDISANEIADIAI--LQNLQGLTQLDISSNDVSD--ISALQDLTT 340
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L LN+ S + D + L GL L L++SD Q+ S + L GL L S+NLS+ +S
Sbjct: 341 LTQLNVSSNEVIDYSV--LQGLTELTNLDVSDNQL--SEISDLQGLHALTSLNLSYNQLS 396
Query: 338 DGS----LRKLAGLS----------------SLKSLNLDARQITDTGLAALTSLTGLTHL 377
D S L++LA L+ L +LNL QITD L+ L L GLT L
Sbjct: 397 DISVLQDLKQLATLNLSYNPVSDIAVLQNFKDLTTLNLSFTQITD--LSTLQGLKGLTSL 454
Query: 378 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
DL +I D A L++ K L L + L+D + +++L L LNLS N ++D
Sbjct: 455 DLHSNQIRDISA--LQDLKGLYRLNVSDNQLSD--ISALRNLKGLFSLNLSIN-QISD-- 507
Query: 438 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 497
+ + LT L SLN S++R++ + L+ L L SL L + ++ DI LQ ++P L
Sbjct: 508 IAALQDLTRLTSLNASHNRLSDISV--LQGLTRLNSLDLGANQIA--DISVLQ--NIPGL 561
Query: 498 VSF 500
S
Sbjct: 562 FSL 564
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 130/414 (31%), Positives = 187/414 (45%), Gaps = 64/414 (15%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
+GL L+D L LD ++ ISD + LR L LT L N + + L
Sbjct: 219 TGLAFLQDLRGLTYLDLSYNHWISDISV--LRHLPKLTHLDLGSNQI---SDIAVLSDLP 273
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD--------------------S 171
L L L +I L L+ L LESL+I N I D S
Sbjct: 274 QLTHLSLS-ANKI-SDLSVLQTLQGLESLDIS-ANEIADIAILQNLQGLTQLDISSNDVS 330
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D+ L LT L L +S ++V D + L+GL +LT NL+ + + L L +L
Sbjct: 331 DISALQDLTTLTQLNVSSNEVIDYSV--LQGLTELT--NLDVSDNQLSEISDLQGLHALT 386
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
LNL+ QLSD + L LNL +N ++D + L+ +L +LNL I D
Sbjct: 387 SLNLSYNQLSD--ISVLQDLKQLATLNLSYNPVSDIAV--LQNFKDLTTLNLSFTQITD- 441
Query: 292 GLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
L L GL L L+L Q+ S L+ L GL L +SD L ++ L +L
Sbjct: 442 -LSTLQGLKGLTSLDLHSNQIRDISALQDLKGLYRL--------NVSDNQLSDISALRNL 492
Query: 351 K---SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
K SLNL QI+D +AAL LT LT L+ R++D + L+ L SL++
Sbjct: 493 KGLFSLNLSINQISD--IAALQDLTRLTSLNASHNRLSD--ISVLQGLTRLNSLDLGANQ 548
Query: 408 LTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
+ D V ++I L SL L +D + + GL SLN+S+++I+S
Sbjct: 549 IADISVLQNIPGLFSLDL-------RFSD--VSVFQDFKGLTSLNLSSNQISSV 593
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 112/246 (45%), Gaps = 27/246 (10%)
Query: 261 FNEITDECLVHLKGLTNLESLN-------LDSCGIGDEGLVN--LTGLCNLKCLELSDTQ 311
FN+ ++ HL+ N +LN L G+ LV+ + +L L L D
Sbjct: 26 FNQSLNDTYHHLQRQPNAYALNDEHQIVGLSLQGVDGHELVDASIEQYPHLSALYLFD-- 83
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
+ S + + L L +I LS ++ S + A ++L ++ L I+D L+ L
Sbjct: 84 IVSPEIVPFASLPGLSTIALSGQDVTATSYLQQA--TNLTTVYLKTTHISDYSF--LSDL 139
Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
LTHLDL +I D +++++ K L SL + + D + +KDL++L LNL N
Sbjct: 140 KNLTHLDLSNNQIAD--ISFIQDLKQLTSLGLAANKIVD--ISGLKDLTTLNSLNLRSNA 195
Query: 432 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 491
+ D ++ L L L VS T GL L+ L+ L L L S +DI L
Sbjct: 196 -IDDYSVLL--NFKELSQLTVSVREAT--GLAFLQDLRGLTYLDL-SYNHWISDISVL-- 247
Query: 492 RDLPNL 497
R LP L
Sbjct: 248 RHLPKL 253
>gi|254417119|ref|ZP_05030865.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
gi|196176097|gb|EDX71115.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
Length = 414
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 101/316 (31%), Positives = 177/316 (56%), Gaps = 33/316 (10%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+D++PLSGLTNL++L + + ++D ++ L L L ++L +T ++ LS L +L
Sbjct: 86 TDIRPLSGLTNLRTLYLGSNLISD--VSPLVELTNLKKVDLSHNQITN--VNPLSGLTNL 141
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
+L+L+R Q+++ S++ +L+ L+LG N+IT+ + L GLTNLE LNL I +
Sbjct: 142 EWLDLSRNQITN--VNPLSELTNLEWLDLGHNQITN--ISPLSGLTNLEFLNLSHNQITN 197
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
++ + L NLK + L++ Q+ + + L+ LTNL I+L+ I+ ++R L L++L
Sbjct: 198 FRII--SALINLKDIALNNNQI--TDIYPLAELTNLRRISLNNNQIT--TVRPLVQLTNL 251
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
+SL + QITD + L+ LT L L L +ITD L NL L + +TD
Sbjct: 252 ESLYIGNNQITD--IRPLSQLTNLRQLALNHNQITDIRP--LSQLTNLTGLALSHNQITD 307
Query: 411 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL-NVSNSRITSAGLRHLKP-- 467
V+ + L++L ++L+ N I+ +T LV+L N++ + S + ++ P
Sbjct: 308 --VRPLSQLTNLEWIHLNYNQ---------ITNITPLVNLNNLTGLDLHSNQVTNVTPLV 356
Query: 468 -LKNLRSLTLESCKVT 482
LKNL+ + L ++T
Sbjct: 357 QLKNLKWIDLRFNQIT 372
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 142/290 (48%), Gaps = 65/290 (22%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L +DLS + +T+ L + +NL+ LD QI++ + L GL+NL L+ N
Sbjct: 139 TNLEWLDLSRNQITNVN--PLSELTNLEWLDLGHN-QITN--ISPLSGLTNLEFLNLSHN 193
Query: 117 NAITAQGMKAFAGLINL--VKLDLERCTRIH--GGLVNLK----------------GLMK 156
IT + + LINL + L+ + T I+ L NL+ L
Sbjct: 194 -QIT--NFRIISALINLKDIALNNNQITDIYPLAELTNLRRISLNNNQITTVRPLVQLTN 250
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
LESL I N ITD ++PLS LTNL+ L ++ +++TD ++ L +LT NL G
Sbjct: 251 LESLYIG-NNQITD--IRPLSQLTNLRQLALNHNQITD-----IRPLSQLT--NLTG--- 297
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
L L+ Q++D S++ +L+ ++L +N+IT+ + L L
Sbjct: 298 ----------------LALSHNQITD--VRPLSQLTNLEWIHLNYNQITN--ITPLVNLN 337
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
NL L+L S + + + L L NLK ++L Q+ + + LSGLTNL
Sbjct: 338 NLTGLDLHSNQVTN--VTPLVQLKNLKWIDLRFNQI--TDISSLSGLTNL 383
>gi|159486717|ref|XP_001701384.1| hypothetical protein CHLREDRAFT_153692 [Chlamydomonas reinhardtii]
gi|158271686|gb|EDO97500.1| predicted protein [Chlamydomonas reinhardtii]
Length = 293
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 97/162 (59%), Gaps = 11/162 (6%)
Query: 348 SSLKSLNLDARQI-------TDTGLAALTSLTGLTHLDLFGARITDSGAAYL---RNFKN 397
S+L LNL ++ TD L ++ L+ LT LD+FG R+TD+GAA L +
Sbjct: 116 STLTHLNLTYTKVCVLRGTLTDAALRHVSRLSCLTALDVFGCRLTDAGAAVLGGAPALRG 175
Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSNSR 456
LRSLE CGGG+TDAG + L++LT LNLSQN L D + L + L L L+++++
Sbjct: 176 LRSLECCGGGITDAGALCLARLTALTSLNLSQNPRLGDAGVRSLAAHLAELQVLSLNHTN 235
Query: 457 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 498
+TSA LR L L LRSL L +V+ + RL++R P+L+
Sbjct: 236 VTSACLRELAQLPWLRSLALAGSRVSEAGVARLKARAHPDLI 277
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 11/137 (8%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT-LLNLEGC-----PVTAACL 221
+TD+ ++ +S L+ L +L + ++TD+G A L G L L +LE C A CL
Sbjct: 135 LTDAALRHVSRLSCLTALDVFGCRLTDAGAAVLGGAPALRGLRSLECCGGGITDAGALCL 194
Query: 222 DSLSALGSLFYLNLNR-CQLSDDGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
L+AL S LNL++ +L D G + + L+VL+L +T CL L L L
Sbjct: 195 ARLTALTS---LNLSQNPRLGDAGVRSLAAHLAELQVLSLNHTNVTSACLRELAQLPWLR 251
Query: 280 SLNLDSCGIGDEGLVNL 296
SL L + + G+ L
Sbjct: 252 SLALAGSRVSEAGVARL 268
Score = 39.3 bits (90), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 78/179 (43%), Gaps = 30/179 (16%)
Query: 248 FSKIGSLKVLNLGFNEI-------TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
+ +L LNL + ++ TD L H+ L+ L +L++ C + D G L G
Sbjct: 112 WGPPSTLTHLNLTYTKVCVLRGTLTDAALRHVSRLSCLTALDVFGCRLTDAGAAVLGGAP 171
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQ 359
L+ GL +LE GI+D LA L++L SLNL +
Sbjct: 172 ALR------------------GLRSLECCG---GGITDAGALCLARLTALTSLNLSQNPR 210
Query: 360 ITDTGLAALTS-LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
+ D G+ +L + L L L L +T + L LRSL + G +++AGV +K
Sbjct: 211 LGDAGVRSLAAHLAELQVLSLNHTNVTSACLRELAQLPWLRSLALAGSRVSEAGVARLK 269
>gi|300691489|ref|YP_003752484.1| type III effector protein [Ralstonia solanacearum PSI07]
gi|299078549|emb|CBJ51205.2| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
solanacearum PSI07]
Length = 533
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 108/374 (28%), Positives = 171/374 (45%), Gaps = 11/374 (2%)
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC----ITDSDMKPLSGLTNLKSLQIS 188
L +LDL RC G + G+ L L + N I + L+ L SL +S
Sbjct: 141 LTELDLSRCR----GPITAAGIAHLSHLPLVRLNVRDQRIGVEGARLLANHPTLTSLDVS 196
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
++ G L +LT L++ + A +L+A +L L+++ + D+G
Sbjct: 197 NGRIGPEGARALADNTRLTTLSVSHNRIGAEGAKALAASETLTSLDISENGIGDEGACAL 256
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
+ L LN+ N I E L L SL++ IGDEG+ L L L +
Sbjct: 257 ATNTKLTTLNVNRNRIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVE 316
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
T+VG+ G+ L+ L S+ + I D R LA +SL +L++++ I+ G AL
Sbjct: 317 RTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESNGISPAGAQAL 376
Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
+ T LT L+L I D+GA L SL + GL+DAG + ++T L+
Sbjct: 377 AANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRNGLSDAGATILAASKTMTTLDAG 436
Query: 429 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
N + D ++ L +L+V ++ I +AG R L L SL L + +VT ++
Sbjct: 437 DNT-IRDAGARALAANRTLTTLDVRSNEIENAGARALAANTWLASLDLRNNRVTEAGVRA 495
Query: 489 -LQSRDLPNL-VSF 500
L +R L +L VSF
Sbjct: 496 LLANRTLSSLGVSF 509
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 101/368 (27%), Positives = 171/368 (46%), Gaps = 13/368 (3%)
Query: 114 RRNNAITAQGMKAFA-GLINLVKLDLER-CTRIHGGLVNLK---GLMKLESLNIKWCNCI 168
RR+ + Q ++A + L V+ D+ + R GL +K LE L +
Sbjct: 72 RRSKPLAVQRLRAVSKPLKAAVEADMRQLVIRDRAGLAGVKRAGNYPALEKLTL--IGPF 129
Query: 169 TDSDMKPLSGLTNLKSLQIS-C-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
TD+D++ L +L L +S C +T +GIA+L L L LN+ + L+
Sbjct: 130 TDNDLRGLPA--SLTELDLSRCRGPITAAGIAHLSHL-PLVRLNVRDQRIGVEGARLLAN 186
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
+L L+++ ++ +G + L L++ N I E L L SL++
Sbjct: 187 HPTLTSLDVSNGRIGPEGARALADNTRLTTLSVSHNRIGAEGAKALAASETLTSLDISEN 246
Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
GIGDEG L L L ++ ++G G + L+ L S+++ I D +R LA
Sbjct: 247 GIGDEGACALATNTKLTTLNVNRNRIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAA 306
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
+ L +LN++ ++ G+ AL + LT L + I D+GA L +L +L I
Sbjct: 307 NARLTTLNVERTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESN 366
Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 466
G++ AG + + ++LT LNL N + D + S T L+SL+V + ++ AG L
Sbjct: 367 GISPAGAQALAANTTLTTLNLGYN-GIGDAGAQAWSANTTLISLSVRRNGLSDAGATILA 425
Query: 467 PLKNLRSL 474
K + +L
Sbjct: 426 ASKTMTTL 433
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 112/388 (28%), Positives = 175/388 (45%), Gaps = 14/388 (3%)
Query: 57 SSLLSVDLSG--SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSN---LTSL 111
+SL +DLS +T +G+ HL S+L + N Q G+E R L+N LTSL
Sbjct: 139 ASLTELDLSRCRGPITAAGIAHL---SHLPLVRLNVRDQRI--GVEGARLLANHPTLTSL 193
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
N I +G +A A L L + G L L SL+I N I D
Sbjct: 194 DVS-NGRIGPEGARALADNTRLTTLSVSHNRIGAEGAKALAASETLTSLDIS-ENGIGDE 251
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
L+ T L +L ++ +++ G L + LT L++ G + + +L+A L
Sbjct: 252 GACALATNTKLTTLNVNRNRIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLT 311
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
LN+ R ++ DG + +L L + N I D L T+L +L+++S GI
Sbjct: 312 TLNVERTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESNGISPA 371
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
G L L L L +G +G + S T L S+++ G+SD LA ++
Sbjct: 372 GAQALAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRNGLSDAGATILAASKTMT 431
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
+L+ I D G AL + LT LD+ I ++GA L L SL++ +T+A
Sbjct: 432 TLDAGDNTIRDAGARALAANRTLTTLDVRSNEIENAGARALAANTWLASLDLRNNRVTEA 491
Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
GV+ + L++ TL +L + N K E
Sbjct: 492 GVRAL--LANRTLSSLGVSFNYCSKPTE 517
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 103/230 (44%), Gaps = 3/230 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
+ G +L S+D+ G+D+ D G+ L + L +L+ ++ G+ L LTSL
Sbjct: 281 AAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVERT-RVGADGVGALAASKTLTSLRI 339
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN I G +A A +L L +E G L L +LN+ + N I D+
Sbjct: 340 DSNN-IGDAGARALATNTSLTTLHIESNGISPAGAQALAANTTLTTLNLGY-NGIGDAGA 397
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+ S T L SL + + ++D+G L + +T L+ + A +L+A +L L
Sbjct: 398 QAWSANTTLISLSVRRNGLSDAGATILAASKTMTTLDAGDNTIRDAGARALAANRTLTTL 457
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
++ ++ + G + L L+L N +T+ + L L SL +
Sbjct: 458 DVRSNEIENAGARALAANTWLASLDLRNNRVTEAGVRALLANRTLSSLGV 507
>gi|290977840|ref|XP_002671645.1| member of the leucine-rich repeat protein family [Naegleria
gruberi]
gi|284085215|gb|EFC38901.1| member of the leucine-rich repeat protein family [Naegleria
gruberi]
Length = 392
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 130/250 (52%), Gaps = 6/250 (2%)
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L L + + + D G++Y+ L KLT LN+ +++ LS + L YL+++ ++
Sbjct: 109 LVDLDMKMNNIGDIGVSYISNLTKLTKLNVSYNRISSEGAKYLSKMKQLTYLDISHNKIG 168
Query: 242 DDGCEKF--SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
+DG KF + I L LN+ +NEI + + L L SLN+ IGD+G+ +L +
Sbjct: 169 EDGS-KFICNGIRQLTHLNIYYNEIGVRGVKFIGALKQLTSLNVGGNRIGDQGIEHLMRM 227
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
L L +S+ + G + +S +T L ++N+ I D + ++ + L L++
Sbjct: 228 HQLVDLNISNNNIRVEGAKLVSEMTQLTNLNIRKNIIGDDGAKYISEMKQLIKLDIGKNY 287
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH---I 416
+++ G ++ + LT+LD+ I + GA ++ K L +L + G +TD G+KH +
Sbjct: 288 LSNRGAKYISEMKYLTNLDIRSNNIREEGAEFIGEMKQLTNLNLNGNYITDEGIKHLCGL 347
Query: 417 KDLSSLTLLN 426
L SL++ N
Sbjct: 348 YQLVSLSIYN 357
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 84/306 (27%), Positives = 148/306 (48%), Gaps = 6/306 (1%)
Query: 200 LKG--LQKLTLLNLEGCPVTAACLDSLSAL--GSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
LKG LQ + +L +E T SA+ L L++ + D G S + L
Sbjct: 75 LKGQLLQNIEILIVEKRNETIFDCKIFSAMMKNRLVDLDMKMNNIGDIGVSYISNLTKLT 134
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLELSDTQVGS 314
LN+ +N I+ E +L + L L++ IG++G + G+ L L + ++G
Sbjct: 135 KLNVSYNRISSEGAKYLSKMKQLTYLDISHNKIGEDGSKFICNGIRQLTHLNIYYNEIGV 194
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
G++ + L L S+N+ I D + L + L LN+ I G ++ +T L
Sbjct: 195 RGVKFIGALKQLTSLNVGGNRIGDQGIEHLMRMHQLVDLNISNNNIRVEGAKLVSEMTQL 254
Query: 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
T+L++ I D GA Y+ K L L+I L++ G K+I ++ LT L++ N N+
Sbjct: 255 TNLNIRKNIIGDDGAKYISEMKQLIKLDIGKNYLSNRGAKYISEMKYLTNLDIRSN-NIR 313
Query: 435 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL 494
++ E I + L +LN++ + IT G++HL L L SL++ + + D +L S +
Sbjct: 314 EEGAEFIGEMKQLTNLNLNGNYITDEGIKHLCGLYQLVSLSIYNTGIQMEDGAKLLSETM 373
Query: 495 PNLVSF 500
+ +S+
Sbjct: 374 NHHLSY 379
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 128/271 (47%), Gaps = 4/271 (1%)
Query: 125 KAFAGLIN--LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
K F+ ++ LV LD++ G+ + L KL LN+ + N I+ K LS + L
Sbjct: 99 KIFSAMMKNRLVDLDMKMNNIGDIGVSYISNLTKLTKLNVSY-NRISSEGAKYLSKMKQL 157
Query: 183 KSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L IS +K+ + G ++ G+++LT LN+ + + + AL L LN+ ++
Sbjct: 158 TYLDISHNKIGEDGSKFICNGIRQLTHLNIYYNEIGVRGVKFIGALKQLTSLNVGGNRIG 217
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
D G E ++ L LN+ N I E + +T L +LN+ IGD+G ++ +
Sbjct: 218 DQGIEHLMRMHQLVDLNISNNNIRVEGAKLVSEMTQLTNLNIRKNIIGDDGAKYISEMKQ 277
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
L L++ + + G +++S + L ++++ I + + + L +LNL+ IT
Sbjct: 278 LIKLDIGKNYLSNRGAKYISEMKYLTNLDIRSNNIREEGAEFIGEMKQLTNLNLNGNYIT 337
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
D G+ L L L L ++ I A L
Sbjct: 338 DEGIKHLCGLYQLVSLSIYNTGIQMEDGAKL 368
Score = 45.1 bits (105), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 3/159 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I D G+EHL + L L+ NN I +G K + + L L++ + G +
Sbjct: 215 RIGDQGIEHLMRMHQLVDLNISNNN-IRVEGAKLVSEMTQLTNLNIRKNIIGDDGAKYIS 273
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+ +L L+I N +++ K +S + L +L I + + + G ++ +++LT LNL
Sbjct: 274 EMKQLIKLDI-GKNYLSNRGAKYISEMKYLTNLDIRSNNIREEGAEFIGEMKQLTNLNLN 332
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLS-DDGCEKFSK 250
G +T + L L L L++ + +DG + S+
Sbjct: 333 GNYITDEGIKHLCGLYQLVSLSIYNTGIQMEDGAKLLSE 371
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 82/161 (50%), Gaps = 5/161 (3%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF-NFCIQISDGGLEHLRGLSNLTSLSFRR 115
L S+++ G+ + D G+ HL L L+ N I++ G + + ++ LT+L+ R+
Sbjct: 204 KQLTSLNVGGNRIGDQGIEHLMRMHQLVDLNISNNNIRVE--GAKLVSEMTQLTNLNIRK 261
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N I G K + + L+KLD+ + + G + + L +L+I+ N I + +
Sbjct: 262 -NIIGDDGAKYISEMKQLIKLDIGKNYLSNRGAKYISEMKYLTNLDIR-SNNIREEGAEF 319
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
+ + L +L ++ + +TD GI +L GL +L L++ +
Sbjct: 320 IGEMKQLTNLNLNGNYITDEGIKHLCGLYQLVSLSIYNTGI 360
>gi|290972682|ref|XP_002669080.1| predicted protein [Naegleria gruberi]
gi|284082622|gb|EFC36336.1| predicted protein [Naegleria gruberi]
Length = 434
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 92/350 (26%), Positives = 168/350 (48%), Gaps = 28/350 (8%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
+L LN+ W N + D D+K + L NL L++S ++++ + + ++ L +LT L++
Sbjct: 46 QLTELNVNW-NRLKDEDVKSIGNLKNLTLLELSGNEISKNSMKFISQLSELTKLSVGLNS 104
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+ ++S+ L L LN+ ++ +G + K+ +L +L++ N I E ++ L
Sbjct: 105 IENEGINSIINLSKLTCLNIINANITSEGVKLIGKLSNLTILDISGNLIGAEGGQYIGEL 164
Query: 276 TNLE------------------------SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
NL+ SL L IG+EG ++ L L L+L +
Sbjct: 165 NNLKILVASDNELGVFGAKSIGEMNQLTSLCLIGNSIGNEGAKYISQLTQLTDLDLGRNE 224
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
+G+ G + L+ L L ++++ ISD L + L L L++ +I DTG+ + L
Sbjct: 225 IGNEGFKLLTKLEKLTNLDMVSNNISD--LSSIGQLGLLNCLDVRKNKIEDTGIRNICQL 282
Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
GL L L G IT GA L L +L I + D G K I L++L L++S
Sbjct: 283 GGLNALRLCGNPITSEGAKILSEMVQLTNLSISETHIDDEGAKFIAQLTTLKYLDISTK- 341
Query: 432 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
+T ++ I L+ L+SL+++ + I G+ ++ ++ L +L C +
Sbjct: 342 RITANGVKFICQLSKLISLDINWNNIGDEGVLYISRMQQLETLNAVYCNI 391
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 87/328 (26%), Positives = 154/328 (46%), Gaps = 23/328 (7%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
S++ S L L L ++ +++ D + + L+ LTLL L G ++ + +S L L
Sbjct: 36 SEIDKFSRLDQLTELNVNWNRLKDEDVKSIGNLKNLTLLELSGNEISKNSMKFISQLSEL 95
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L++ + ++G + L LN+ IT E + + L+NL L++ IG
Sbjct: 96 TKLSVGLNSIENEGINSIINLSKLTCLNIINANITSEGVKLIGKLSNLTILDISGNLIGA 155
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
EG + L NLK L SD ++G G + + + L S+ L I + + ++ L+ L
Sbjct: 156 EGGQYIGELNNLKILVASDNELGVFGAKSIGEMNQLTSLCLIGNSIGNEGAKYISQLTQL 215
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFG----------------------ARITDSG 388
L+L +I + G LT L LT+LD+ +I D+G
Sbjct: 216 TDLDLGRNEIGNEGFKLLTKLEKLTNLDMVSNNISDLSSIGQLGLLNCLDVRKNKIEDTG 275
Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
+ L +L +CG +T G K + ++ LT L++S+ ++ D+ + I+ LT L
Sbjct: 276 IRNICQLGGLNALRLCGNPITSEGAKILSEMVQLTNLSISE-THIDDEGAKFIAQLTTLK 334
Query: 449 SLNVSNSRITSAGLRHLKPLKNLRSLTL 476
L++S RIT+ G++ + L L SL +
Sbjct: 335 YLDISTKRITANGVKFICQLSKLISLDI 362
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 105/369 (28%), Positives = 172/369 (46%), Gaps = 29/369 (7%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L L+ N+ ++ D ++ + L NLT L N I+ MK + L L KL + +
Sbjct: 47 LTELNVNWN-RLKDEDVKSIGNLKNLTLLELS-GNEISKNSMKFISQLSELTKLSVGLNS 104
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
+ G+ ++ L KL LNI N IT +K + L+NL L IS + + G Y+
Sbjct: 105 IENEGINSIINLSKLTCLNIINAN-ITSEGVKLIGKLSNLTILDISGNLIGAEGGQYIGE 163
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
L L +L + S+ + L L L + ++G + S++ L L+LG N
Sbjct: 164 LNNLKILVASDNELGVFGAKSIGEMNQLTSLCLIGNSIGNEGAKYISQLTQLTDLDLGRN 223
Query: 263 EITDE---CLVHLKGLTNLESL-----NLDSCG--------------IGDEGLVNLTGLC 300
EI +E L L+ LTNL+ + +L S G I D G+ N+ L
Sbjct: 224 EIGNEGFKLLTKLEKLTNLDMVSNNISDLSSIGQLGLLNCLDVRKNKIEDTGIRNICQLG 283
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
L L L + S G + LS + L ++++S T I D + +A L++LK L++ ++I
Sbjct: 284 GLNALRLCGNPITSEGAKILSEMVQLTNLSISETHIDDEGAKFIAQLTTLKYLDISTKRI 343
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE--ICGGGLTDAGVKHIKD 418
T G+ + L+ L LD+ I D G Y+ + L +L C GL G K + +
Sbjct: 344 TANGVKFICQLSKLISLDINWNNIGDEGVLYISRMQQLETLNAVYCNIGL--EGAKLLSE 401
Query: 419 LSSLTLLNL 427
+ LT+L++
Sbjct: 402 MEQLTVLDV 410
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 98/365 (26%), Positives = 167/365 (45%), Gaps = 27/365 (7%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++LSG++++ + + + S L L I + G+ + LS LT L+ N IT+
Sbjct: 74 LELSGNEISKNSMKFISQLSELTKLSVGLN-SIENEGINSIINLSKLTCLNIINAN-ITS 131
Query: 122 QGMKAFAGLINLVKLDLE------RCTRIHGGLVNLK------------GLMKLESLN-- 161
+G+K L NL LD+ + G L NLK G + +N
Sbjct: 132 EGVKLIGKLSNLTILDISGNLIGAEGGQYIGELNNLKILVASDNELGVFGAKSIGEMNQL 191
Query: 162 IKWC---NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
C N I + K +S LT L L + +++ + G L L+KLT NL+
Sbjct: 192 TSLCLIGNSIGNEGAKYISQLTQLTDLDLGRNEIGNEGFKLLTKLEKLT--NLDMVSNNI 249
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
+ L S+ LG L L++ + ++ D G ++G L L L N IT E L + L
Sbjct: 250 SDLSSIGQLGLLNCLDVRKNKIEDTGIRNICQLGGLNALRLCGNPITSEGAKILSEMVQL 309
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
+L++ I DEG + L LK L++S ++ ++G++ + L+ L S+++++ I D
Sbjct: 310 TNLSISETHIDDEGAKFIAQLTTLKYLDISTKRITANGVKFICQLSKLISLDINWNNIGD 369
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
+ ++ + L++LN I G L+ + LT LD+ RI G L N
Sbjct: 370 EGVLYISRMQQLETLNAVYCNIGLEGAKLLSEMEQLTVLDVKIKRIPGEGIQLLENIARF 429
Query: 399 RSLEI 403
+SL +
Sbjct: 430 KSLVV 434
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 119/249 (47%), Gaps = 20/249 (8%)
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLE-------------------SLNLDSCGIGDEGL 293
+L LN+ +N+I+++ + L G+ +L+ LN++ + DE +
Sbjct: 3 NLTYLNIDWNKISEKSKIILSGMKHLKILAASGSEIDKFSRLDQLTELNVNWNRLKDEDV 62
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
++ L NL LELS ++ + ++ +S L+ L +++ I + + + LS L L
Sbjct: 63 KSIGNLKNLTLLELSGNEISKNSMKFISQLSELTKLSVGLNSIENEGINSIINLSKLTCL 122
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
N+ IT G+ + L+ LT LD+ G I G Y+ NL+ L L G
Sbjct: 123 NIINANITSEGVKLIGKLSNLTILDISGNLIGAEGGQYIGELNNLKILVASDNELGVFGA 182
Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 473
K I +++ LT L L N + ++ + IS LT L L++ + I + G + L L+ L +
Sbjct: 183 KSIGEMNQLTSLCLIGNS-IGNEGAKYISQLTQLTDLDLGRNEIGNEGFKLLTKLEKLTN 241
Query: 474 LTLESCKVT 482
L + S ++
Sbjct: 242 LDMVSNNIS 250
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 97/202 (48%), Gaps = 6/202 (2%)
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
+ NL LN+D I ++ + L+G+ +LK L S +++ S L L +N+++
Sbjct: 1 MKNLTYLNIDWNKISEKSKIILSGMKHLKILAASGSEI-----DKFSRLDQLTELNVNWN 55
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
+ D ++ + L +L L L +I+ + ++ L+ LT L + I + G + N
Sbjct: 56 RLKDEDVKSIGNLKNLTLLELSGNEISKNSMKFISQLSELTKLSVGLNSIENEGINSIIN 115
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
L L I +T GVK I LS+LT+L++S N + + + I L L L S+
Sbjct: 116 LSKLTCLNIINANITSEGVKLIGKLSNLTILDISGNL-IGAEGGQYIGELNNLKILVASD 174
Query: 455 SRITSAGLRHLKPLKNLRSLTL 476
+ + G + + + L SL L
Sbjct: 175 NELGVFGAKSIGEMNQLTSLCL 196
>gi|443729605|gb|ELU15470.1| hypothetical protein CAPTEDRAFT_224593 [Capitella teleta]
Length = 858
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 44/393 (11%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP ++++ + +L+ + L +L F LQ L L YP ++ + I + L
Sbjct: 444 LPANVAEGLLKQLMKEKLLRPKTLHPFIPSHLQTLLLDYYPYATNELLHEIRLH-NCLAH 502
Query: 62 VDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+ L S +TD GL + L+ L+ C Q++D L +R L NL L + ++
Sbjct: 503 LSLKACSLITDRGLQDISSLKRLKVLNLAACTQLTDNCLPLVRELPNLQVLILE-STGVS 561
Query: 121 AQGMKAF--AGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLS 177
+GM+ L +LV LDL + T++ + NL K KL LN++ S++ LS
Sbjct: 562 DRGMQELFHQPLTSLVNLDLSK-TQVTHRIFNLAKNAPKLSHLNLE------QSEVASLS 614
Query: 178 GLTNL--KSLQISCSK-VTDS---------------------GIAYLKGLQKLTLLNLEG 213
G+ L +SL +S +K VTDS G L+ LQ L LL
Sbjct: 615 GVKELCLQSLNLSHTKIVTDSLLCLSGCDIRALNISNTPNIEGDLGLEYLQSLKLLQHLS 674
Query: 214 CPVTAACLD---SLSALGSLFYLNL-NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
P + D + L L+L N + DDG KI SL+ L L +ITD L
Sbjct: 675 LPSRLSLSDHGLQFTTAMPLVLLDLTNYLNVGDDGMRHIGKITSLRRLLLCNTKITDGGL 734
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH--LSGLTNLE 327
+ L+GL NLE ++LD I DEG + L+ L L++T + ++ L H L+ L
Sbjct: 735 LFLRGLVNLEEISLDRTAITDEGACVVEAFTRLQQLSLTETGISNAFLEHQSLNPCYLLS 794
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
+NLS T ISD +R L L +L LNLD +I
Sbjct: 795 KLNLSRTAISDKGVRCLR-LPNLTLLNLDHTRI 826
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 89/329 (27%), Positives = 147/329 (44%), Gaps = 65/329 (19%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L L++K C+ ITD ++ +S L LK L ++ C+++TD+ + ++ L L +L LE
Sbjct: 500 LAHLSLKACSLITDRGLQDISSLKRLKVLNLAACTQLTDNCLPLVRELPNLQVLILESTG 559
Query: 216 VTAACLDSL--SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
V+ + L L SL L+L++ Q++ L LNL +E+ L
Sbjct: 560 VSDRGMQELFHQPLTSLVNLDLSKTQVTHRIFNLAKNAPKLSHLNLEQSEVAS-----LS 614
Query: 274 GLTNL--ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-------------------- 311
G+ L +SLNL I + L+ L+G C+++ L +S+T
Sbjct: 615 GVKELCLQSLNLSHTKIVTDSLLCLSG-CDIRALNISNTPNIEGDLGLEYLQSLKLLQHL 673
Query: 312 -------------------------------VGSSGLRHLSGLTNLESINLSFTGISDGS 340
VG G+RH+ +T+L + L T I+DG
Sbjct: 674 SLPSRLSLSDHGLQFTTAMPLVLLDLTNYLNVGDDGMRHIGKITSLRRLLLCNTKITDGG 733
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY--LRNFKNL 398
L L GL +L+ ++LD ITD G + + T L L L I+++ + L L
Sbjct: 734 LLFLRGLVNLEEISLDRTAITDEGACVVEAFTRLQQLSLTETGISNAFLEHQSLNPCYLL 793
Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
L + ++D GV+ ++ L +LTLLNL
Sbjct: 794 SKLNLSRTAISDKGVRCLR-LPNLTLLNL 821
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 122/260 (46%), Gaps = 36/260 (13%)
Query: 230 LFYLNLNRCQL-SDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG 287
L +L+L C L +D G + S + LKVLNL ++TD CL ++ L NL+ L L+S G
Sbjct: 500 LAHLSLKACSLITDRGLQDISSLKRLKVLNLAACTQLTDNCLPLVRELPNLQVLILESTG 559
Query: 288 IGDEGLVNL--TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
+ D G+ L L +L L+LS TQV L +NL + ++ L+
Sbjct: 560 VSDRGMQELFHQPLTSLVNLDLSKTQVTHRIFNLAKNAPKLSHLNLEQSEVAS-----LS 614
Query: 346 GLSSL--KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
G+ L +SLNL +I L L+ D A + N N+
Sbjct: 615 GVKELCLQSLNLSHTKIVTDSLLCLSG--------------CDIRALNISNTPNIEG--- 657
Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS-RITSAGL 462
D G+++++ L L L+L +L+D L+ + + LV L+++N + G+
Sbjct: 658 ------DLGLEYLQSLKLLQHLSLPSRLSLSDHGLQFTTAMP-LVLLDLTNYLNVGDDGM 710
Query: 463 RHLKPLKNLRSLTLESCKVT 482
RH+ + +LR L L + K+T
Sbjct: 711 RHIGKITSLRRLLLCNTKIT 730
>gi|290976637|ref|XP_002671046.1| predicted protein [Naegleria gruberi]
gi|284084611|gb|EFC38302.1| predicted protein [Naegleria gruberi]
Length = 350
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 92/318 (28%), Positives = 161/318 (50%), Gaps = 8/318 (2%)
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N I+++ ++ LINL +L + + + L L KL LNI C IT+ ++ +
Sbjct: 12 NVISSEATQSIGNLINLTELSIGYNDIGYKAVEYLSKLEKLTILNISKCK-ITNLGIESM 70
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
G+ L SL+IS + + DSG+ L L +LT L+++ + +S + +L L++
Sbjct: 71 IGMKQLTSLEISENGIDDSGVKSLIELSQLTKLDIDHNEIRTEGCKCISQMKNLTDLSVG 130
Query: 237 RCQLSDDGCEKFSKIGSLKVL-NLGFNEITDECLVHLKGLTNLE---SLNLDSCGIGDEG 292
+ ++G KF I LK L NL + I + ++ +T+L+ SLN+ IGD G
Sbjct: 131 LNGIDEEGI-KF--ICELKQLTNLSAHAIQIVSVDGVQSITSLKQLISLNIGDNWIGDAG 187
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
++ + LK L + T +G G + +S +TNL +++S + D + ++GL+ L
Sbjct: 188 AKVISEMKQLKTLYMHSTLIGIDGTKSISEMTNLTFLDISANNLGDEGAKLISGLNQLIK 247
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
L + I + G +++ L LT LD+ I GA L K+L L+I + D+G
Sbjct: 248 LWISEISIGNEGAESISKLEKLTELDVHRNSIETEGAKSLSKLKHLTRLDISENFIEDSG 307
Query: 413 VKHIKDLSSLTLLNLSQN 430
VK++ + L LN+ N
Sbjct: 308 VKYLSKMKKLKHLNVYDN 325
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 143/288 (49%), Gaps = 2/288 (0%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+ +L L+L +++ S+ L +L L++ + E SK+ L +LN+
Sbjct: 1 MDQLKKLDLISNVISSEATQSIGNLINLTELSIGYNDIGYKAVEYLSKLEKLTILNISKC 60
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
+IT+ + + G+ L SL + GI D G+ +L L L L++ ++ + G + +S
Sbjct: 61 KITNLGIESMIGMKQLTSLEISENGIDDSGVKSLIELSQLTKLDIDHNEIRTEGCKCISQ 120
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT-GLAALTSLTGLTHLDLFG 381
+ NL +++ GI + ++ + L L +L+ A QI G+ ++TSL L L++
Sbjct: 121 MKNLTDLSVGLNGIDEEGIKFICELKQLTNLSAHAIQIVSVDGVQSITSLKQLISLNIGD 180
Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
I D+GA + K L++L + + G K I ++++LT L++S N NL D+ +LI
Sbjct: 181 NWIGDAGAKVISEMKQLKTLYMHSTLIGIDGTKSISEMTNLTFLDISAN-NLGDEGAKLI 239
Query: 442 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
SGL L+ L +S I + G + L+ L L + + K L
Sbjct: 240 SGLNQLIKLWISEISIGNEGAESISKLEKLTELDVHRNSIETEGAKSL 287
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 151/327 (46%), Gaps = 29/327 (8%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+D+ + +L L L+ + C +I++ G+E + G+ LTSL N I G+K+
Sbjct: 36 NDIGYKAVEYLSKLEKLTILNISKC-KITNLGIESMIGMKQLTSLEISEN-GIDDSGVKS 93
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L L KLD++ + + C CI S + NL L
Sbjct: 94 LIELSQLTKLDIDH-----------------NEIRTEGCKCI--------SQMKNLTDLS 128
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-CLDSLSALGSLFYLNLNRCQLSDDGC 245
+ + + + GI ++ L++LT L+ + + + S+++L L LN+ + D G
Sbjct: 129 VGLNGIDEEGIKFICELKQLTNLSAHAIQIVSVDGVQSITSLKQLISLNIGDNWIGDAGA 188
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
+ S++ LK L + I + + +TNL L++ + +GDEG ++GL L L
Sbjct: 189 KVISEMKQLKTLYMHSTLIGIDGTKSISEMTNLTFLDISANNLGDEGAKLISGLNQLIKL 248
Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
+S+ +G+ G +S L L +++ I + L+ L L L++ I D+G+
Sbjct: 249 WISEISIGNEGAESISKLEKLTELDVHRNSIETEGAKSLSKLKHLTRLDISENFIEDSGV 308
Query: 366 AALTSLTGLTHLDLFGARITDSGAAYL 392
L+ + L HL+++ I D+G YL
Sbjct: 309 KYLSKMKKLKHLNVYDNGI-DNGNKYL 334
>gi|157865941|ref|XP_001681677.1| putative surface antigen protein [Leishmania major strain Friedlin]
gi|68124975|emb|CAJ02737.1| putative surface antigen protein [Leishmania major strain Friedlin]
Length = 776
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 100/431 (23%), Positives = 201/431 (46%), Gaps = 6/431 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ SL +++L G+ V+ + +L++L+ Q+S +++L +L+
Sbjct: 251 SEMKSLTNLELEGTQVSGTLPPGWSSIKSLRTLNLE-GTQVSGSLPPEWVSMASLRTLNL 309
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK-LESLNIKWCNCITDSD 172
++ ++ + +L L+LE T++ G L MK L +LN++ ++ S
Sbjct: 310 E-GTQVSGTLPPGWSEMKSLTSLELE-GTQVSGTLPPRWSEMKSLRTLNLE-GTQVSGSL 366
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ +L++L + ++V+ S + L LNLEG V+ S + SL
Sbjct: 367 PPQWVSMASLRTLNLEGTQVSGSLPPEWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTS 426
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L L Q+S ++S++ SL+ LNL +++ + +L +LNL+ +
Sbjct: 427 LELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGSLPPEWVSMASLRTLNLEGTQVSGTL 486
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
+ + +L LEL TQV + S + +L ++NL T +S + ++SL++
Sbjct: 487 PPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGSLPPEWVSMASLRT 546
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
LNL+ Q++ T + + LT L+L G +++ + K+LR+L + G ++ A
Sbjct: 547 LNLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGAL 606
Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 472
++ SLT L L + L+ G+ L +L + ++++ + L +LR
Sbjct: 607 PPGWGEMKSLTNLYL-EGTQLSGSLPTEWRGMKSLTNLYLEGTQVSGSLPPQWSSLTSLR 665
Query: 473 SLTLESCKVTA 483
+L LE +V+
Sbjct: 666 TLDLEGTQVSG 676
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 118/488 (24%), Positives = 210/488 (43%), Gaps = 41/488 (8%)
Query: 6 ISQQIF---NELVYSRCLTEVSLEA-FRDCALQDLCLGQYP----GVNDKWMDVIASQGS 57
+S +F N Y+ L E+ + +R ++DL P + D W SQ
Sbjct: 78 VSVNVFVGLNVSTYAGTLPEIPVNVDYRHVMIRDLGFWNMPLLSGTLPDSW-----SQLG 132
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
LLSV LSG V+ + L+ L C HL G +L SL
Sbjct: 133 GLLSVTLSGCGVSGTLPASWGLMVRLRELTVRDC--------RHLTG--SLPSL------ 176
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPL 176
++ L NL KL L R ++ G L + L L I IT +
Sbjct: 177 ---------WSWLPNLQKLVL-RQLQLSGTLPAEWSRVTSLLELEIVAAGDITGTLPPEW 226
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
S + +L++L + ++V+ + ++ LT L LEG V+ S++ SL LNL
Sbjct: 227 SSIKSLRTLNLEGTQVSGTLPPGWSEMKSLTNLELEGTQVSGTLPPGWSSIKSLRTLNLE 286
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q+S ++ + SL+ LNL +++ + +L SL L+ +
Sbjct: 287 GTQVSGSLPPEWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRW 346
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
+ + +L+ L L TQV S + +L ++NL T +S + ++SL++LNL+
Sbjct: 347 SEMKSLRTLNLEGTQVSGSLPPQWVSMASLRTLNLEGTQVSGSLPPEWVSMASLRTLNLE 406
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
Q++ T + + LT L+L G +++ + K+LR+L + G ++ +
Sbjct: 407 GTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGSLPPEW 466
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
++SL LNL + ++ S + L SL + ++++ +K+LR+L L
Sbjct: 467 VSMASLRTLNL-EGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNL 525
Query: 477 ESCKVTAN 484
E +V+ +
Sbjct: 526 EGTQVSGS 533
>gi|374586212|ref|ZP_09659304.1| hypothetical protein Lepil_2392 [Leptonema illini DSM 21528]
gi|373875073|gb|EHQ07067.1| hypothetical protein Lepil_2392 [Leptonema illini DSM 21528]
Length = 346
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 85/312 (27%), Positives = 148/312 (47%), Gaps = 9/312 (2%)
Query: 79 DCSNLQSLD-FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
D + +++++ + + Q+ + +R + + +L T M + L KL
Sbjct: 26 DWAKVRAIEQYVYTGQLKGVTMAEIRAVKDWYAL------GATDAEMPRLLSMQRLEKLS 79
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
L LV+L G L+ LN+ ITD+ +K + + L+ L ++ +K+TD+G+
Sbjct: 80 LGGQNYTDAALVHLAGFKHLKELNLS-TGPITDAGLKSIGQIKTLEKLDLAETKITDAGV 138
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
A L GL +L L+L VT AC+ S+ + SL L LN ++D G E+ + L+ L
Sbjct: 139 ADLVGLSRLKDLSLIDTAVTDACMTSIMQMKSLEILQLNMTGITDRGVEQLIQHQRLRKL 198
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
LG +TDE + ++ + NL+ I +GLV L NL+ L L+DT V L
Sbjct: 199 ILGGTAVTDESVGYVAQIANLDEAVFSRTKIRGKGLVRLRQAKNLRRLWLADTSVDDDDL 258
Query: 318 RH-LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
L L+ ++L I+ ++ +A + +K L + +I + L L T L
Sbjct: 259 IELLQPPMELDMLHLGHLKITGKTMEAIARCNCVKDLYVGYTKIGNDDLLKLIPATRLKS 318
Query: 377 LDLFGARITDSG 388
+ + R+TD G
Sbjct: 319 ITVTKTRVTDDG 330
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 127/267 (47%), Gaps = 26/267 (9%)
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
+D + + L+ L+LG TD LVHL G +L+ LNL + I D GL ++ +
Sbjct: 62 TDAEMPRLLSMQRLEKLSLGGQNYTDAALVHLAGFKHLKELNLSTGPITDAGLKSIGQIK 121
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
L+ L+L++T++ +G+ L GL+ L+ ++L T ++D + + + SL+ L L+ I
Sbjct: 122 TLEKLDLAETKITDAGVADLVGLSRLKDLSLIDTAVTDACMTSIMQMKSLEILQLNMTGI 181
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAY------------------------LRNFK 396
TD G+ L L L L G +TD Y LR K
Sbjct: 182 TDRGVEQLIQHQRLRKLILGGTAVTDESVGYVAQIANLDEAVFSRTKIRGKGLVRLRQAK 241
Query: 397 NLRSLEICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 455
NLR L + + D ++ ++ L +L+L + +T KT+E I+ + L V +
Sbjct: 242 NLRRLWLADTSVDDDDLIELLQPPMELDMLHLG-HLKITGKTMEAIARCNCVKDLYVGYT 300
Query: 456 RITSAGLRHLKPLKNLRSLTLESCKVT 482
+I + L L P L+S+T+ +VT
Sbjct: 301 KIGNDDLLKLIPATRLKSITVTKTRVT 327
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 107/222 (48%), Gaps = 4/222 (1%)
Query: 271 HLKGLTNLESLNLD---SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
LKG+T E + + G D + L + L+ L L + L HL+G +L+
Sbjct: 41 QLKGVTMAEIRAVKDWYALGATDAEMPRLLSMQRLEKLSLGGQNYTDAALVHLAGFKHLK 100
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
+NLS I+D L+ + + +L+ L+L +ITD G+A L L+ L L L +TD+
Sbjct: 101 ELNLSTGPITDAGLKSIGQIKTLEKLDLAETKITDAGVADLVGLSRLKDLSLIDTAVTDA 160
Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
+ K+L L++ G+TD GV+ + L L L +TD+++ ++ + L
Sbjct: 161 CMTSIMQMKSLEILQLNMTGITDRGVEQLIQHQRLRKLILG-GTAVTDESVGYVAQIANL 219
Query: 448 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
S ++I GL L+ KNLR L L V +D+ L
Sbjct: 220 DEAVFSRTKIRGKGLVRLRQAKNLRRLWLADTSVDDDDLIEL 261
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 157/340 (46%), Gaps = 39/340 (11%)
Query: 3 PRDISQ-QIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYP-GVNDKWMDVIASQGSSLL 60
P D ++ + + VY+ L V++ R A++D Y G D M + S L
Sbjct: 24 PADWAKVRAIEQYVYTGQLKGVTMAEIR--AVKDW----YALGATDAEMPRLLSM-QRLE 76
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+ L G + TD+ L+HL G +HL+ L NL++ IT
Sbjct: 77 KLSLGGQNYTDAALVHL-------------------AGFKHLKEL-NLST------GPIT 110
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
G+K+ + L KLDL G+ +L GL +L+ L++ +TD+ M + +
Sbjct: 111 DAGLKSIGQIKTLEKLDLAETKITDAGVADLVGLSRLKDLSL-IDTAVTDACMTSIMQMK 169
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+L+ LQ++ + +TD G+ L Q+L L L G VT + ++ + +L +R ++
Sbjct: 170 SLEILQLNMTGITDRGVEQLIQHQRLRKLILGGTAVTDESVGYVAQIANLDEAVFSRTKI 229
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVH-LKGLTNLESLNLDSCGIGDEGLVNLTGL 299
G + + +L+ L L + D+ L+ L+ L+ L+L I + + +
Sbjct: 230 RGKGLVRLRQAKNLRRLWLADTSVDDDDLIELLQPPMELDMLHLGHLKITGKTMEAI-AR 288
Query: 300 CN-LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
CN +K L + T++G+ L L T L+SI ++ T ++D
Sbjct: 289 CNCVKDLYVGYTKIGNDDLLKLIPATRLKSITVTKTRVTD 328
>gi|87307769|ref|ZP_01089912.1| serine/threonine protein kinase [Blastopirellula marina DSM 3645]
gi|87289383|gb|EAQ81274.1| serine/threonine protein kinase [Blastopirellula marina DSM 3645]
Length = 1283
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 118/481 (24%), Positives = 199/481 (41%), Gaps = 58/481 (12%)
Query: 9 QIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD 68
++ N ++++ +T AF DC LQ + L P V D+W+ + + + + S +
Sbjct: 855 KVTNLMLWATPITREDFLAFADCKLQGVLLSYTP-VKDEWLTHL-THPEAFTDLGFSFTQ 912
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+ D GL ++ + +L +I+D GL + L S+ R+ ++T G+ F
Sbjct: 913 IGDEGLAAFQNSKKIVNLHLEHT-KITDVGLAYFHDCRELKSIRLRQT-SVTDAGVLPFK 970
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L +L L + L+ L + I W D D K S
Sbjct: 971 HCSKLEELSLATTNVTAAAVEELRA--ALPNCKITW-----DGDAKTES----------P 1013
Query: 189 CSKVTDS-GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCE 246
K +D+ Y+ + + LN G + +A + A L ++N N C+ +DDG
Sbjct: 1014 EEKNSDNLAAKYVLSIGGIVRLNGGGTDIHSAT-ELPPAPFRLTHVNFNLCKKATDDGLA 1072
Query: 247 KFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
F+ + L + F +T L + K +L+ LN CN
Sbjct: 1073 VFANCKDIVSLTMRFTPNVTGRGLAYFKNCKDLKELN-----------------CNY--- 1112
Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
+ S+GL L+ NLE I+L + LR +A L L +NL A + D L
Sbjct: 1113 ----SPYVSAGLPLLANCKNLEKISLMGVKFTREELRPIAELP-LTFVNLGATPVQDEWL 1167
Query: 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
+ T+ LT+L+ +I D G A +N L+ L + +TD G+ + D L +L
Sbjct: 1168 SDFTNAESLTYLNFASTKIGDKGLAAFQNCNALQQLSLQDTNITDEGLAYFYDCRDLEIL 1227
Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 485
L QN + D L L + +S +R+T+AG+ LK +L C V +D
Sbjct: 1228 QL-QNTKVRDFGLLRFKSCQKLKQVEISKTRVTAAGVDELK-------KSLPYCTVVWDD 1279
Query: 486 I 486
+
Sbjct: 1280 V 1280
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 94/214 (43%), Gaps = 28/214 (13%)
Query: 253 SLKVLNLGFN---EITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELS 308
+K+ ++ FN E T+E ++E+L L + I +GL + NLK L L
Sbjct: 779 PVKLKSVFFNQAIECTNEEFAVFADCQDIEALTLWAVPTISADGLKHFRRCRNLKVLALP 838
Query: 309 DTQVGSSGLRHLS---GLTNL--------------------ESINLSFTGISDGSLRKLA 345
SGL HLS +TNL + + LS+T + D L L
Sbjct: 839 HCDNIGSGLSHLSECDKVTNLMLWATPITREDFLAFADCKLQGVLLSYTPVKDEWLTHLT 898
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
+ L QI D GLAA + + +L L +ITD G AY + + L+S+ +
Sbjct: 899 HPEAFTDLGFSFTQIGDEGLAAFQNSKKIVNLHLEHTKITDVGLAYFHDCRELKSIRLRQ 958
Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
+TDAGV K S L L+L+ N+T +E
Sbjct: 959 TSVTDAGVLPFKHCSKLEELSLA-TTNVTAAAVE 991
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 92/409 (22%), Positives = 157/409 (38%), Gaps = 43/409 (10%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
L+S+ FN I+ ++ ++ +L+ I+A G+K F NL L L C
Sbjct: 781 KLKSVFFNQAIECTNEEFAVFADCQDIEALTLWAVPTISADGLKHFRRCRNLKVLALPHC 840
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
I GL +L K+ +L + W IT D + L+ + +S + V D + +L
Sbjct: 841 DNIGSGLSHLSECDKVTNLML-WATPITREDFLAFAD-CKLQGVLLSYTPVKDEWLTHLT 898
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
+ T LG F Q+ D+G F + L+L
Sbjct: 899 HPEAFT------------------DLGFSF------TQIGDEGLAAFQNSKKIVNLHLEH 934
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
+ITD L + L+S+ L + D G++ L+ L L+ T V ++ + L
Sbjct: 935 TKITDVGLAYFHDCRELKSIRLRQTSVTDAGVLPFKHCSKLEELSLATTNVTAAAVEELR 994
Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
L + +++ G + K S NL A+ + G G+ L+ G
Sbjct: 995 AA--LPNCKITWDGDA-----KTESPEEKNSDNLAAKYVLSIG--------GIVRLNGGG 1039
Query: 382 ARITDSGAAYLRNFK-NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
I + F+ + +C TD G+ + + L + N+T + L
Sbjct: 1040 TDIHSATELPPAPFRLTHVNFNLCKKA-TDDGLAVFANCKDIVSLTMRFTPNVTGRGLAY 1098
Query: 441 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
L LN + S SAGL L KNL ++L K T +++ +
Sbjct: 1099 FKNCKDLKELNCNYSPYVSAGLPLLANCKNLEKISLMGVKFTREELRPI 1147
>gi|218960535|ref|YP_001740310.1| putative Phosphoprotein phosphatase [Candidatus Cloacamonas
acidaminovorans]
gi|167729192|emb|CAO80103.1| putative Phosphoprotein phosphatase [Candidatus Cloacamonas
acidaminovorans str. Evry]
Length = 3445
Score = 98.2 bits (243), Expect = 9e-18, Method: Composition-based stats.
Identities = 114/350 (32%), Positives = 179/350 (51%), Gaps = 51/350 (14%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L L+SL++ N I SD+ PL+GLTNL+ L + ++++D
Sbjct: 2943 LTNLQSLDLD-SNQI--SDLSPLAGLTNLQELYLYYNQISD------------------- 2980
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
L L+ L +L YL+L Q+SD + + +L+ L L +N+I D L L
Sbjct: 2981 -------LSPLAELTNLQYLDLGGNQISD--LSPLAGLNNLQELYLYWNQIGD--LSPLA 3029
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
GLTNL+ L+L S I D L L L NL L+LS Q+ S L L+GLTNL+ + L +
Sbjct: 3030 GLTNLQELDLYSNQISD--LSPLAELTNLWYLDLSYNQI--SDLSPLAGLTNLQDLYLGW 3085
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
I+ L LAGL++L+ LNL + QI+D L+ L LT L +L L+ +I+D + L
Sbjct: 3086 NQIN--YLSPLAGLTNLQVLNLYSNQISD--LSPLAELTNLQYLHLYYNQISD--LSPLT 3139
Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
NL L + ++D + + L++L L+L N ++D + ++ LT L L +
Sbjct: 3140 GLTNLHYLYLAYNQISD--LSPLIGLTNLQYLHLYYN-QISD--ISPLAELTNLQYLWLD 3194
Query: 454 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP-NLVSFRP 502
+++I+ L L L NL L L+ ++ + QS LP + S+ P
Sbjct: 3195 SNQISD--LSPLAGLTNLWWLWLDGNPISYESMLLAQSWSLPWSTTSYNP 3242
Score = 92.8 bits (229), Expect = 4e-16, Method: Composition-based stats.
Identities = 101/265 (38%), Positives = 140/265 (52%), Gaps = 23/265 (8%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L +NLQ LD QISD L L GL+NL L N + AGL NL +L
Sbjct: 2353 LAGLTNLQYLDLG-GNQISD--LSPLAGLTNLQDLYLGWNQI---NYLSPLAGLTNLQEL 2406
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
DL +I + L GL L+ L + + N I SD+ PLSGLTNL+ L + +++ S
Sbjct: 2407 DLNN-NQI-SNINPLAGLTNLQKLYLYY-NQI--SDLSPLSGLTNLQYLLLEYNQI--SN 2459
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
I+ L GL L +L+L ++ L L+ L +L+YL+L+ Q+SD + +L+
Sbjct: 2460 ISPLAGLTNLQVLDLYSNQISD--LSPLAELTNLWYLDLSYNQISD--LSPLVGLVNLQG 2515
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
L L N+I D L L GLTNL+ L+L I D L LTGL NL L L+ Q+ S
Sbjct: 2516 LWLDNNQIND--LSPLIGLTNLQYLHLYYNQISD--LSPLTGLTNLHYLYLAYNQI--SD 2569
Query: 317 LRHLSGLTNLESINLSFTGISDGSL 341
L + GLTNL+ + L + IS S+
Sbjct: 2570 LSSVEGLTNLQELYLDYNPISYESM 2594
Score = 92.8 bits (229), Expect = 4e-16, Method: Composition-based stats.
Identities = 108/320 (33%), Positives = 170/320 (53%), Gaps = 31/320 (9%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
LTNL+SL + ++++D ++ L GL L L L + L L+ L +L YL+L
Sbjct: 2312 LTNLQSLDLDSNQISD--LSPLAGLTNLLELYLLDNMINY--LSPLAGLTNLQYLDLGGN 2367
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
Q+SD + + +L+ L LG+N+I L L GLTNL+ L+L++ I + + L G
Sbjct: 2368 QISD--LSPLAGLTNLQDLYLGWNQIN--YLSPLAGLTNLQELDLNNNQISN--INPLAG 2421
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L NL+ L L Q+ S L LSGLTNL+ + L + IS+ + LAGL++L+ L+L +
Sbjct: 2422 LTNLQKLYLYYNQI--SDLSPLSGLTNLQYLLLEYNQISN--ISPLAGLTNLQVLDLYSN 2477
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
QI+D L+ L LT L +LDL +I+D + L NL+ L + I D
Sbjct: 2478 QISD--LSPLAELTNLWYLDLSYNQISD--LSPLVGLVNLQGLWLDN--------NQIND 2525
Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN---VSNSRITSAGLRHLKPLKNLRSLT 475
LS L L Q +L + +S LTGL +L+ ++ ++I+ L ++ L NL+ L
Sbjct: 2526 LSPLIGLTNLQYLHLYYNQISDLSPLTGLTNLHYLYLAYNQISD--LSSVEGLTNLQELY 2583
Query: 476 LESCKVTANDIKRLQSRDLP 495
L+ ++ + QS LP
Sbjct: 2584 LDYNPISYESMLLAQSWSLP 2603
Score = 89.7 bits (221), Expect = 3e-15, Method: Composition-based stats.
Identities = 83/230 (36%), Positives = 130/230 (56%), Gaps = 19/230 (8%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
+++++G L +L + + SD+ PL+GL NL+ L + ++++D I+ L GL L
Sbjct: 1089 IISIEGAQYLTNLQVMYLYSNQISDLSPLAGLANLQELLLYANQISD--ISPLAGLNNLQ 1146
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L L+ ++ L L+ L +L L L Q+SD + + +L+VL+L N+I+
Sbjct: 1147 YLLLQYNQISD--LSPLAGLTNLQNLILAYNQISD--ISPLAGLTNLQVLDLYSNQIS-- 1200
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
L L GLTNL+ L L S I D L L G+ NL+ + L + Q+ S L L+GLTNL+
Sbjct: 1201 YLSPLAGLTNLQELYLHSNQISD--LSPLAGMTNLRVINLKNNQI--SDLSPLAGLTNLQ 1256
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
+ L + I+D + LAGL++L SLNL QI+D L+ L GLT+L
Sbjct: 1257 YLLLGWNKIND--ISPLAGLTNLWSLNLSYNQISD-----LSPLAGLTNL 1299
Score = 87.8 bits (216), Expect = 1e-14, Method: Composition-based stats.
Identities = 115/350 (32%), Positives = 165/350 (47%), Gaps = 75/350 (21%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+NLQSLD + QISD L L GL+NL L N + AGL NL LDL
Sbjct: 2313 TNLQSLDLD-SNQISD--LSPLAGLTNLLELYLLDN---MINYLSPLAGLTNLQYLDL-- 2364
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
GG N I SD+ PL+GLTNL+ L + +++
Sbjct: 2365 -----GG------------------NQI--SDLSPLAGLTNLQDLYLGWNQIN------- 2392
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
L L+ L +L L+LN Q+S+ + + +L+ L L
Sbjct: 2393 -------------------YLSPLAGLTNLQELDLNNNQISN--INPLAGLTNLQKLYLY 2431
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
+N+I+D L L GLTNL+ L L+ I + + L GL NL+ L+L Q+ S L L
Sbjct: 2432 YNQISD--LSPLSGLTNLQYLLLEYNQISN--ISPLAGLTNLQVLDLYSNQI--SDLSPL 2485
Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
+ LTNL ++LS+ ISD L L GL +L+ L LD QI D L+ L LT L +L L+
Sbjct: 2486 AELTNLWYLDLSYNQISD--LSPLVGLVNLQGLWLDNNQIND--LSPLIGLTNLQYLHLY 2541
Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
+I+D + L NL L + ++D + ++ L++L L L N
Sbjct: 2542 YNQISD--LSPLTGLTNLHYLYLAYNQISD--LSSVEGLTNLQELYLDYN 2587
Score = 70.9 bits (172), Expect = 2e-09, Method: Composition-based stats.
Identities = 84/258 (32%), Positives = 130/258 (50%), Gaps = 39/258 (15%)
Query: 57 SSLLSVDLSGSDVTD----SGLIHLKDC----------------SNLQSLDFNFCIQISD 96
++L +DL G+ ++D +GL +L+D +NLQ LD N QIS+
Sbjct: 2357 TNLQYLDLGGNQISDLSPLAGLTNLQDLYLGWNQINYLSPLAGLTNLQELDLNNN-QISN 2415
Query: 97 GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 156
+ L GL+NL L N + +GL NL L LE +I + L GL
Sbjct: 2416 --INPLAGLTNLQKLYLYYNQI---SDLSPLSGLTNLQYLLLEY-NQI-SNISPLAGLTN 2468
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L+ L++ + N I SD+ PL+ LTNL L +S ++++D ++ L GL L L L+ +
Sbjct: 2469 LQVLDL-YSNQI--SDLSPLAELTNLWYLDLSYNQISD--LSPLVGLVNLQGLWLDNNQI 2523
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
L L L +L YL+L Q+SD + + +L L L +N+I+D L ++GLT
Sbjct: 2524 ND--LSPLIGLTNLQYLHLYYNQISD--LSPLTGLTNLHYLYLAYNQISD--LSSVEGLT 2577
Query: 277 NLESLNLDSCGIGDEGLV 294
NL+ L LD I E ++
Sbjct: 2578 NLQELYLDYNPISYESML 2595
Score = 68.9 bits (167), Expect = 5e-09, Method: Composition-based stats.
Identities = 87/251 (34%), Positives = 137/251 (54%), Gaps = 20/251 (7%)
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
+L+V+ L N+I+D L L GL NL+ L L + I D + L GL NL+ L L Q+
Sbjct: 1100 NLQVMYLYSNQISD--LSPLAGLANLQELLLYANQISD--ISPLAGLNNLQYLLLQYNQI 1155
Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
S L L+GLTNL+++ L++ ISD + LAGL++L+ L+L + QI+ L+ L LT
Sbjct: 1156 --SDLSPLAGLTNLQNLILAYNQISD--ISPLAGLTNLQVLDLYSNQIS--YLSPLAGLT 1209
Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
L L L +I+D + L NLR + + ++D + + L++L L L N
Sbjct: 1210 NLQELYLHSNQISD--LSPLAGMTNLRVINLKNNQISD--LSPLAGLTNLQYLLLGWN-K 1264
Query: 433 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 492
+ D + ++GLT L SLN+S ++I+ L L L NL L L++ ++ + QS
Sbjct: 1265 IND--ISPLAGLTNLWSLNLSYNQISD--LSPLAGLTNLWYLYLDNNPISYESMLLSQSW 1320
Query: 493 DLP-NLVSFRP 502
LP + S+ P
Sbjct: 1321 ALPWSTSSYNP 1331
Score = 68.6 bits (166), Expect = 8e-09, Method: Composition-based stats.
Identities = 69/239 (28%), Positives = 120/239 (50%), Gaps = 38/239 (15%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
+++++G +L+ + + S++ PL+GLTNLK L + ++++D I L GL ++
Sbjct: 1694 IISIEGAQYFTNLDSLYLSYNQISNLNPLAGLTNLKGLNLGSNQISD--INPLAGLTNIS 1751
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L L G ++ +++ L L+ +L+ L L +N+I+D
Sbjct: 1752 WLFLFGNYIS-----NIAPLEGLY---------------------NLRNLQLHYNQISD- 1784
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
+ L L ++ + L S I D + L GL +L LEL Q+ + + LSGL NL+
Sbjct: 1785 -ITPLAALIDIGGIALGSNQIVD--ITPLAGLTHLIGLELYHNQI--NNIDALSGLINLQ 1839
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+ L I D + LAGLS L+ L L+ QI D ++ L+ L L +L L+ +I+D
Sbjct: 1840 WLYLDGNQIID--ISPLAGLSILRELYLENNQIND--ISTLSELNNLQYLFLYNNQISD 1894
Score = 47.0 bits (110), Expect = 0.021, Method: Composition-based stats.
Identities = 58/179 (32%), Positives = 85/179 (47%), Gaps = 26/179 (14%)
Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
SD Q + L+ L+G NL G + S+ L++L+SL+LD+ QI+D L+
Sbjct: 2911 SDYQPTIADLQGLAG-------NLHADGRNIISIEGAQYLTNLQSLDLDSNQISD--LSP 2961
Query: 368 LTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
L LT L L L+ +I+D S A L N + L D G I DLS L LN
Sbjct: 2962 LAGLTNLQELYLYYNQISDLSPLAELTNLQYL-----------DLGGNQISDLSPLAGLN 3010
Query: 427 LSQNCNL---TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
Q L L ++GLT L L++ +++I+ L L L NL L L +++
Sbjct: 3011 NLQELYLYWNQIGDLSPLAGLTNLQELDLYSNQISD--LSPLAELTNLWYLDLSYNQIS 3067
Score = 45.4 bits (106), Expect = 0.070, Method: Composition-based stats.
Identities = 69/255 (27%), Positives = 111/255 (43%), Gaps = 57/255 (22%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
LQDL LG + +N ++ +A ++L +DL+ + + S + L +NLQ L + +
Sbjct: 2381 LQDLYLG-WNQIN--YLSPLAGL-TNLQELDLNNNQI--SNINPLAGLTNLQKL-YLYYN 2433
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL-----------ERC 141
QISD L L GL+NL L N + AGL NL LDL
Sbjct: 2434 QISD--LSPLSGLTNLQYLLLEYNQI---SNISPLAGLTNLQVLDLYSNQISDLSPLAEL 2488
Query: 142 TRI------HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
T + + + +L L+ L +L W + +D+ PL GLTNL+ L + ++++D
Sbjct: 2489 TNLWYLDLSYNQISDLSPLVGLVNLQGLWLDNNQINDLSPLIGLTNLQYLHLYYNQISD- 2547
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
L L+ L +L YL L Q+SD + +L+
Sbjct: 2548 -------------------------LSPLTGLTNLHYLYLAYNQISD--LSSVEGLTNLQ 2580
Query: 256 VLNLGFNEITDECLV 270
L L +N I+ E ++
Sbjct: 2581 ELYLDYNPISYESML 2595
Score = 42.0 bits (97), Expect = 0.67, Method: Composition-based stats.
Identities = 57/198 (28%), Positives = 87/198 (43%), Gaps = 42/198 (21%)
Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG--- 364
SD Q + L+ L+G NL G + S+ L++L+SL+LD+ QI+D
Sbjct: 2280 SDYQPTIADLQGLAG-------NLHADGRNIISIEGAQYLTNLQSLDLDSNQISDLSPLA 2332
Query: 365 -----------------LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
L+ L LT L +LDL G +I+D + L NL+ L +
Sbjct: 2333 GLTNLLELYLLDNMINYLSPLAGLTNLQYLDLGGNQISD--LSPLAGLTNLQDLYL---- 2386
Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI---SGLTGLVSLNVSNSRITSAGLRH 464
G I LS L L Q +L + + I +GLT L L + ++I+ L
Sbjct: 2387 ----GWNQINYLSPLAGLTNLQELDLNNNQISNINPLAGLTNLQKLYLYYNQISD--LSP 2440
Query: 465 LKPLKNLRSLTLESCKVT 482
L L NL+ L LE +++
Sbjct: 2441 LSGLTNLQYLLLEYNQIS 2458
Score = 40.4 bits (93), Expect = 2.2, Method: Composition-based stats.
Identities = 48/126 (38%), Positives = 69/126 (54%), Gaps = 13/126 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L +DL + + S L L +NLQ L + QISD L L G++NL ++ + N
Sbjct: 1187 TNLQVLDLYSNQI--SYLSPLAGLTNLQEL-YLHSNQISD--LSPLAGMTNLRVINLK-N 1240
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N I+ + AGL NL L L +I+ + L GL L SLN+ + N I SD+ PL
Sbjct: 1241 NQIS--DLSPLAGLTNLQYL-LLGWNKIND-ISPLAGLTNLWSLNLSY-NQI--SDLSPL 1293
Query: 177 SGLTNL 182
+GLTNL
Sbjct: 1294 AGLTNL 1299
Score = 38.5 bits (88), Expect = 8.1, Method: Composition-based stats.
Identities = 45/168 (26%), Positives = 84/168 (50%), Gaps = 21/168 (12%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
S + L+ NL++L ++ QISD + L L ++ ++ N + + AGL
Sbjct: 1761 SNIAPLEGLYNLRNLQLHYN-QISD--ITPLAALIDIGGIALGSNQIVD---ITPLAGLT 1814
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS--DMKPLSGLTNLKSLQISC 189
+L+ L+L H + N+ L L +N++W + D+ PL+GL+ L+ L +
Sbjct: 1815 HLIGLEL-----YHNQINNIDALSGL--INLQWLYLDGNQIIDISPLAGLSILRELYLEN 1867
Query: 190 SKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+++ D S ++ L LQ L L N + + L L+ L +L++L L+
Sbjct: 1868 NQINDISTLSELNNLQYLFLYNNQ-----ISDLSPLAGLTNLWWLLLD 1910
>gi|290972583|ref|XP_002669031.1| predicted protein [Naegleria gruberi]
gi|284082572|gb|EFC36287.1| predicted protein [Naegleria gruberi]
Length = 369
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 98/357 (27%), Positives = 167/357 (46%), Gaps = 8/357 (2%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+E + + LT L N I M+ + L +LD+ERC G+ L + +L
Sbjct: 18 IEAISEMRQLTKLGI---NGIQDNDMRQIGMMSQLTELDIERCDISGEGIKFLIVMPQLT 74
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
SLN + N + D K +S ++ L L I+ +++ G Y+ L +LT L++ + +
Sbjct: 75 SLNGGY-NYLQCGDAKLISEMSKLTKLDINTNEIGTEGAKYISTLNQLTELDIGNNNILS 133
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
+ L +L LN+ R + D+G S++ L L++GFN E + + L +L
Sbjct: 134 EGAKFIRNLKNLVKLNVERNNIGDEGANYISEMKQLTALDIGFNMFGFEGIKAISQLNHL 193
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT--QVGSSGLRHL-SGLTNLESINLSFTG 335
L++ I G+ +T NL L L + + L L S + L ++++
Sbjct: 194 IELSIQGNEITINGVKLITEKKNLTSLNLGNIFYDTKTPELSQLVSQMHQLTTLDIENNN 253
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
I LA + +LK LN+ I GL+ +T LT LT L++ G +I D GA + +
Sbjct: 254 IGPEVANLLAEMKNLKHLNIAFNNIEKEGLSHITQLTQLTSLNVCGNQIDDEGAKIVSSM 313
Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
K L L I L + G + I ++ LT L +S N + +K +E+I G L + +
Sbjct: 314 KQLLKLNIEENFLNEGGCETIIEMPQLTQLYISSN-RIGEKQVEMICGKKNLRDIRI 369
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/349 (23%), Positives = 156/349 (44%), Gaps = 32/349 (9%)
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA--------- 219
T S ++ +S + L L I+ + D+ + + + +LT L++E C ++
Sbjct: 14 TSSSIEAISEMRQLTKLGING--IQDNDMRQIGMMSQLTELDIERCDISGEGIKFLIVMP 71
Query: 220 -------------CLDS--LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
C D+ +S + L L++N ++ +G + S + L L++G N I
Sbjct: 72 QLTSLNGGYNYLQCGDAKLISEMSKLTKLDINTNEIGTEGAKYISTLNQLTELDIGNNNI 131
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
E ++ L NL LN++ IGDEG ++ + L L++ G G++ +S L
Sbjct: 132 LSEGAKFIRNLKNLVKLNVERNNIGDEGANYISEMKQLTALDIGFNMFGFEGIKAISQLN 191
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG----LTHLDLF 380
+L +++ I+ ++ + +L SLNL DT L+ L LT LD+
Sbjct: 192 HLIELSIQGNEITINGVKLITEKKNLTSLNL-GNIFYDTKTPELSQLVSQMHQLTTLDIE 250
Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
I A L KNL+ L I + G+ HI L+ LT LN+ N + D+ ++
Sbjct: 251 NNNIGPEVANLLAEMKNLKHLNIAFNNIEKEGLSHITQLTQLTSLNVCGN-QIDDEGAKI 309
Query: 441 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
+S + L+ LN+ + + G + + L L + S ++ ++ +
Sbjct: 310 VSSMKQLLKLNIEENFLNEGGCETIIEMPQLTQLYISSNRIGEKQVEMI 358
>gi|242089917|ref|XP_002440791.1| hypothetical protein SORBIDRAFT_09g006650 [Sorghum bicolor]
gi|241946076|gb|EES19221.1| hypothetical protein SORBIDRAFT_09g006650 [Sorghum bicolor]
Length = 608
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 130/538 (24%), Positives = 219/538 (40%), Gaps = 112/538 (20%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP ++ +F L R L LE F +++++ L + V+ +W+ + S +
Sbjct: 44 LPAPLADALFRRLAARRLLFPSLLEVFSR-SVEEVDLSGFLSVDAEWLAYLGSFRFLRVL 102
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++ + + L + L+ LD + C +ISD G++H+ + +L L +T
Sbjct: 103 TLADCKNIDNDAVWSLSGMNTLKDLDLSRCKKISDAGIKHIVTIESLEKLHLSETE-LTN 161
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
G+ + L NL LDL GG++ +TD ++ L LT
Sbjct: 162 NGVMLISSLTNLSFLDL-------GGIL------------------MTDKSLQSLQVLTR 196
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLE-------GCPVTAACLD------------ 222
L+ L I S+ T+ G + LK +L LNL P T CL+
Sbjct: 197 LEHLDIWGSETTNEGASTLKSFARLIFLNLALTRVNHLSIPPTTRCLNMSNCEIHSICDE 256
Query: 223 -------------SLSALG------------SLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
S + G SL +L+L+ C+LS+ K+ +L+ L
Sbjct: 257 DSEVPVPLENFIVSAATFGNIDKVFSSIQASSLTHLDLSSCKLSN--LSFLEKMKNLEHL 314
Query: 258 NLGFNEITDECLVHLKGL-TNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQVGSS 315
+L +N ITD + H+ L TNL+ L+L + GI + L L G + NL L L++T++ S
Sbjct: 315 DLSYNIITDGAIEHIAKLGTNLQYLSLKNTGITSQALCILAGTVPNLTSLSLANTKIDDS 374
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
L ++ + L +I+LS T I +L L + G T
Sbjct: 375 ALAYIGMIPLLRTIDLSQTSIKGCALENKFYL-----------------------MAGFT 411
Query: 376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
H+ F + K L SL + L+ + + L++L L L + L+D
Sbjct: 412 HMSAF------------EHLKYLESLNLEDTPLSAEVIPPLASLAALKYLYLKSDF-LSD 458
Query: 436 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV-TANDIKRLQSR 492
L +S + L+ L + ++S+GL P L L L C + T I + R
Sbjct: 459 PALHALSAASNLIHLGFCGNILSSSGLLQFVPPTTLCVLDLSGCWILTGEAISTFRKR 516
>gi|348514973|ref|XP_003445014.1| PREDICTED: F-box/LRR-repeat protein 14-like [Oreochromis niloticus]
gi|410918767|ref|XP_003972856.1| PREDICTED: F-box/LRR-repeat protein 14-like [Takifugu rubripes]
Length = 400
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 111/338 (32%), Positives = 180/338 (53%), Gaps = 48/338 (14%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ G+ N++SL +S C +TD+G+ A+++ + L +LNL C
Sbjct: 86 IQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCK----------------- 128
Query: 233 LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GI 288
Q++D + ++ + +L+VL LG + IT+ L+ + GL L+SLNL SC +
Sbjct: 129 ------QITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHV 182
Query: 289 GDEGLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-IS 337
D G+ +L G+ NL+ L L D Q + L+H+S GLT L +NLSF G IS
Sbjct: 183 SDVGIGHLAGMTRSAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLTKLRVLNLSFCGGIS 242
Query: 338 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-GLTHLDL-FGARITDSGAAYL-R 393
D + L+ ++SL SLNL + I+DTG L T L+ LD+ F +I D AY+ +
Sbjct: 243 DAGMIHLSHMTSLWSLNLRSCDNISDTGTMHLAMGTLRLSGLDVSFCDKIGDQTLAYIAQ 302
Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ LT LV ++
Sbjct: 303 GLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLVGID 362
Query: 452 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
+ ++IT GL + L L+ L L ++T ++ R
Sbjct: 363 LYGCTKITKRGLERITQLPCLKVLNLGLWQMTESEKVR 400
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 168/327 (51%), Gaps = 32/327 (9%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 121
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC-P 215
LN+ C ITDS + ++ L NL+ L++ CS +T++G+ + GL +L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRH 181
Query: 216 VTAACLDSLSALG--------SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 264
V+ + L+ + +L YL L CQ L+D + SK + L+VLNL F I
Sbjct: 182 VSDVGIGHLAGMTRSAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLTKLRVLNLSFCGGI 241
Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS 321
+D ++HL +T+L SLNL SC I D G ++L G L L++S ++G L +++
Sbjct: 242 SDAGMIHLSHMTSLWSLNLRSCDNISDTGTMHLAMGTLRLSGLDVSFCDKIGDQTLAYIA 301
Query: 322 -GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHL 377
GL L+S++L ISD + R + + L++LN+ +ITD GL + LT L +
Sbjct: 302 QGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLVGI 361
Query: 378 DLFG-ARITDSGAAYLRNFKNLRSLEI 403
DL+G +IT G + L+ L +
Sbjct: 362 DLYGCTKITKRGLERITQLPCLKVLNL 388
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 141/286 (49%), Gaps = 33/286 (11%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L ++L G S++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 130 ITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGH 189
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L G++ A G +NL L L+ C ++ L ++ KGL KL
Sbjct: 190 LAGMTR-----------------SAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLTKLRV 232
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
LN+ +C I+D+ M LS +T+L SL + SC ++D+G +L G +L+ L++ C
Sbjct: 233 LNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGTMHLAMGTLRLSGLDVSFCDKI 292
Query: 218 AACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVH 271
+L+ + Y L+L C +SDDG + + + L+ LN+G ITD+ L
Sbjct: 293 GD--QTLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLEL 350
Query: 272 LK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
+ LT L ++L C I GL +T L LK L L Q+ S
Sbjct: 351 IADHLTQLVGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTES 396
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 126/245 (51%), Gaps = 32/245 (13%)
Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 322
++G+ N+ESLNL C G+G + + L L C +++D+ +G R
Sbjct: 86 IQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLG----RIAQY 141
Query: 323 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 372
L NLE + L + I++ L +A GL LKSLNL + R ++D G+ L +T
Sbjct: 142 LKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGC 201
Query: 373 -GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNL 427
L +L L ++TD ++ + LR +L CGG ++DAG+ H+ ++SL LNL
Sbjct: 202 LNLEYLTLQDCQKLTDLSLKHISKGLTKLRVLNLSFCGG-ISDAGMIHLSHMTSLWSLNL 260
Query: 428 SQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 484
N++D T+ L G L L+VS +I L ++ + L L+SL+L SC ++ +
Sbjct: 261 RSCDNISDTGTMHLAMGTLRLSGLDVSFCDKIGDQTLAYIAQGLYQLKSLSLCSCHISDD 320
Query: 485 DIKRL 489
I R+
Sbjct: 321 GINRM 325
>gi|326487896|dbj|BAJ89787.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 661
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 146/498 (29%), Positives = 226/498 (45%), Gaps = 72/498 (14%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFC 91
++ +CL + GV + ++ + + L +VDLS D L S L+ L+ C
Sbjct: 106 VRQVCLARASGVGWRGLEALVAACPRLEAVDLSHCVGAGDREAAALAAASGLRELNLEKC 165
Query: 92 IQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLERCTRIHGGLV 149
+ ++D GL + G L +LSF+ I+ G+ +L LD+ + L
Sbjct: 166 LGVTDMGLAKVAVGCPRLETLSFKWCREISDIGVDLLVKKCRDLRSLDISYLKVSNESLR 225
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYL----KGL 203
++ L KLE L + C+CI D ++ LS G +L+S+ +S C+ VT G+A L L
Sbjct: 226 SISTLEKLEELAMVACSCIDDEGLELLSRGSNSLQSVDVSRCNHVTSQGLASLIDGHSFL 285
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
QKL AA DSL +G F L + +L VL L E
Sbjct: 286 QKLN----------AA--DSLHEIGQNFLSKL------------VTLKATLTVLRLDGFE 321
Query: 264 ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCN-------------------- 301
++ L + +G TNL + L C G+ DEG+ +L C+
Sbjct: 322 VSSSLLSAIGEGCTNLVEIGLSKCNGVTDEGISSLVARCSYLRKIDLTCCNLVTNDSLDS 381
Query: 302 -------LKCLEL-SDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
L+CL L S + + GL + S NL+ I+L+ G++D +L LA S L
Sbjct: 382 IADNCKMLECLRLESCSSINEKGLERIASCCPNLKEIDLTDCGVNDEALHHLAKCSELLI 441
Query: 353 LNLD-ARQITDTGLAALTSLTG-LTHLDLFG-ARITDSGAAYLRN-FKNLRSLEICG-GG 407
L L + I+D GL ++S G L LDL+ + ITD G A L N K ++ L +C
Sbjct: 442 LKLGLSSSISDKGLGFISSKCGKLIELDLYRCSSITDDGLAALANGCKKIKLLNLCYCNK 501
Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSNSR-ITSAGLRHL 465
+TD+G+ H+ L LT L L +T + ++ G LV L++ + +GL L
Sbjct: 502 ITDSGLSHLGALEELTNLELRCLVRITGIGISSVVIGCKSLVELDLKRCYSVNDSGLWAL 561
Query: 466 KPLK-NLRSLTLESCKVT 482
NLR LT+ C+VT
Sbjct: 562 ARYALNLRQLTISYCQVT 579
>gi|290982059|ref|XP_002673748.1| predicted protein [Naegleria gruberi]
gi|284087334|gb|EFC41004.1| predicted protein [Naegleria gruberi]
Length = 370
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 151/332 (45%), Gaps = 3/332 (0%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
L+ L + L L+ NN I G+K L L L++ C I L +L L L
Sbjct: 24 LQVLDSMKELKKLNLEYNN-IDPNGIKYLGSLKQLTDLNV-SCCYIGLNLSHLILLKALT 81
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
LNI N I K + + L L I + + G Y+ GL++LT LN+ +
Sbjct: 82 HLNI-TSNNIRAEGAKYIGEMKQLTKLSIGSNDIGPEGAKYISGLEQLTYLNIRSNDIKK 140
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
+S + L YLN+ + D G S++ L L++G+N+I +E ++ L N+
Sbjct: 141 DGAKHISEMKQLTYLNVVGNHICDGGARFISEMKQLSNLSVGYNDIGEEGAKYISELMNV 200
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
L++ I ++G + + L L + +G G +++S L L +++S I D
Sbjct: 201 SILDIGGNSINEKGAKFIGEMKQLTDLRIYCCNIGVEGTQYISSLNQLTHLSISTNNIGD 260
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
+ + + L L++ +I G ++ L L +L + G I D+GA ++ L
Sbjct: 261 EGAKYIGQMKQLTDLSIRENKIGIEGAKSIGQLKNLLNLYISGNEIGDNGAQFISEMNQL 320
Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
L+I +T G+K+I ++ LT L + N
Sbjct: 321 TILDISSINITPIGIKYISNMEYLTDLRIIDN 352
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/322 (23%), Positives = 152/322 (47%), Gaps = 2/322 (0%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
+++ L + LK L + + + +GI YL L++LT LN+ C + L L L +L
Sbjct: 23 NLQVLDSMKELKKLNLEYNNIDPNGIKYLGSLKQLTDLNVSCCYI-GLNLSHLILLKALT 81
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
+LN+ + +G + ++ L L++G N+I E ++ GL L LN+ S I +
Sbjct: 82 HLNITSNNIRAEGAKYIGEMKQLTKLSIGSNDIGPEGAKYISGLEQLTYLNIRSNDIKKD 141
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
G +++ + L L + + G R +S + L ++++ + I + + ++ L ++
Sbjct: 142 GAKHISEMKQLTYLNVVGNHICDGGARFISEMKQLSNLSVGYNDIGEEGAKYISELMNVS 201
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
L++ I + G + + LT L ++ I G Y+ + L L I + D
Sbjct: 202 ILDIGGNSINEKGAKFIGEMKQLTDLRIYCCNIGVEGTQYISSLNQLTHLSISTNNIGDE 261
Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 471
G K+I + LT L++ +N + + + I L L++L +S + I G + + + L
Sbjct: 262 GAKYIGQMKQLTDLSIREN-KIGIEGAKSIGQLKNLLNLYISGNEIGDNGAQFISEMNQL 320
Query: 472 RSLTLESCKVTANDIKRLQSRD 493
L + S +T IK + + +
Sbjct: 321 TILDISSINITPIGIKYISNME 342
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 144/306 (47%), Gaps = 2/306 (0%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L N+ +L + + + L +++L LNLE + + L +L L LN++ C
Sbjct: 6 LENIANLAVRMNGEIGFNLQVLDSMKELKKLNLEYNNIDPNGIKYLGSLKQLTDLNVSCC 65
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ + + +L LN+ N I E ++ + L L++ S IG EG ++G
Sbjct: 66 YIGLN-LSHLILLKALTHLNITSNNIRAEGAKYIGEMKQLTKLSIGSNDIGPEGAKYISG 124
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L L L + + G +H+S + L +N+ I DG R ++ + L +L++
Sbjct: 125 LEQLTYLNIRSNDIKKDGAKHISEMKQLTYLNVVGNHICDGGARFISEMKQLSNLSVGYN 184
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
I + G ++ L ++ LD+ G I + GA ++ K L L I + G ++I
Sbjct: 185 DIGEEGAKYISELMNVSILDIGGNSINEKGAKFIGEMKQLTDLRIYCCNIGVEGTQYISS 244
Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 478
L+ LT L++S N N+ D+ + I + L L++ ++I G + + LKNL +L +
Sbjct: 245 LNQLTHLSISTN-NIGDEGAKYIGQMKQLTDLSIRENKIGIEGAKSIGQLKNLLNLYISG 303
Query: 479 CKVTAN 484
++ N
Sbjct: 304 NEIGDN 309
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/317 (23%), Positives = 134/317 (42%), Gaps = 26/317 (8%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
L HL L LT L+ NN I A+G K + L KL +
Sbjct: 71 LSHLILLKALTHLNITSNN-IRAEGAKYIGEMKQLTKLSI-------------------- 109
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
N I K +SGL L L I + + G ++ +++LT LN+ G +
Sbjct: 110 -----GSNDIGPEGAKYISGLEQLTYLNIRSNDIKKDGAKHISEMKQLTYLNVVGNHICD 164
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
+S + L L++ + ++G + S++ ++ +L++G N I ++ + + L
Sbjct: 165 GGARFISEMKQLSNLSVGYNDIGEEGAKYISELMNVSILDIGGNSINEKGAKFIGEMKQL 224
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
L + C IG EG ++ L L L +S +G G +++ + L +++ I
Sbjct: 225 TDLRIYCCNIGVEGTQYISSLNQLTHLSISTNNIGDEGAKYIGQMKQLTDLSIRENKIGI 284
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
+ + L +L +L + +I D G ++ + LT LD+ IT G Y+ N + L
Sbjct: 285 EGAKSIGQLKNLLNLYISGNEIGDNGAQFISEMNQLTILDISSINITPIGIKYISNMEYL 344
Query: 399 RSLEICGGGLTDAGVKH 415
L I + G K+
Sbjct: 345 TDLRIIDNNIDSMGAKY 361
>gi|290991272|ref|XP_002678259.1| predicted protein [Naegleria gruberi]
gi|284091871|gb|EFC45515.1| predicted protein [Naegleria gruberi]
Length = 434
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/320 (28%), Positives = 156/320 (48%), Gaps = 9/320 (2%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
S++ S L L L ++ +++ D + + L+ LTLL L G ++ + +S L L
Sbjct: 36 SEIDKFSRLDQLTELNVNWNRLKDEDVESIGNLKNLTLLELSGNEISKNSMKFISQLSEL 95
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L++ + ++G + L LN+ IT E + + L+NL L++ IG
Sbjct: 96 TKLSVGLNSIENEGINSIINLSKLTCLNIINANITSEGVKLIGKLSNLTILDISGNLIGA 155
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
EG + L NLK L SD ++G G + + + L S+ L I + + ++ LS L
Sbjct: 156 EGGQYIGELKNLKTLVASDNELGVLGAKSIGEMNQLTSLCLIGNSIGNEGAKYISQLSQL 215
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD---SGAAYLRNFKNLRSLEICGGG 407
L+L +I D G L L LT+LDL I+D +G L N ++R +I
Sbjct: 216 TDLDLGKNEIGDEGFKLLAKLEKLTNLDLVSNNISDLSSTGQLGLLNCLDVRKNKI---- 271
Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 467
D G+++I LS L L L N +T + +++S + L +L++S + I G + +
Sbjct: 272 -EDKGIRNICQLSGLQSLRLCANP-ITSEGAKILSEMVQLTNLSISETHIDDEGAKFIAQ 329
Query: 468 LKNLRSLTLESCKVTANDIK 487
L L+ L + + ++TAN +K
Sbjct: 330 LTTLKYLDISTKRITANGVK 349
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 90/350 (25%), Positives = 166/350 (47%), Gaps = 28/350 (8%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
+L LN+ W N + D D++ + L NL L++S ++++ + + ++ L +LT L++
Sbjct: 46 QLTELNVNW-NRLKDEDVESIGNLKNLTLLELSGNEISKNSMKFISQLSELTKLSVGLNS 104
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+ ++S+ L L LN+ ++ +G + K+ +L +L++ N I E ++ L
Sbjct: 105 IENEGINSIINLSKLTCLNIINANITSEGVKLIGKLSNLTILDISGNLIGAEGGQYIGEL 164
Query: 276 TNLESL----------NLDSCG--------------IGDEGLVNLTGLCNLKCLELSDTQ 311
NL++L S G IG+EG ++ L L L+L +
Sbjct: 165 KNLKTLVASDNELGVLGAKSIGEMNQLTSLCLIGNSIGNEGAKYISQLSQLTDLDLGKNE 224
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
+G G + L+ L L +++L ISD L L L L++ +I D G+ + L
Sbjct: 225 IGDEGFKLLAKLEKLTNLDLVSNNISD--LSSTGQLGLLNCLDVRKNKIEDKGIRNICQL 282
Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
+GL L L IT GA L L +L I + D G K I L++L L++S
Sbjct: 283 SGLQSLRLCANPITSEGAKILSEMVQLTNLSISETHIDDEGAKFIAQLTTLKYLDISTK- 341
Query: 432 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
+T ++ I L+ L+SL+++ + I G+ ++ ++ L +L C +
Sbjct: 342 RITANGVKFICQLSKLISLDINWNNIGDEGVLYISRMQQLETLNAVYCNI 391
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 108/372 (29%), Positives = 175/372 (47%), Gaps = 29/372 (7%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L L+ N+ ++ D +E + L NLT L N I+ MK + L L KL + +
Sbjct: 47 LTELNVNWN-RLKDEDVESIGNLKNLTLLELS-GNEISKNSMKFISQLSELTKLSVGLNS 104
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
+ G+ ++ L KL LNI N IT +K + L+NL L IS + + G Y+
Sbjct: 105 IENEGINSIINLSKLTCLNIINAN-ITSEGVKLIGKLSNLTILDISGNLIGAEGGQYIGE 163
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
L+ L L + S+ + L L L + ++G + S++ L L+LG N
Sbjct: 164 LKNLKTLVASDNELGVLGAKSIGEMNQLTSLCLIGNSIGNEGAKYISQLSQLTDLDLGKN 223
Query: 263 EITDE---CLVHLKGLTNLESL-----NLDSCG--------------IGDEGLVNLTGLC 300
EI DE L L+ LTNL+ + +L S G I D+G+ N+ L
Sbjct: 224 EIGDEGFKLLAKLEKLTNLDLVSNNISDLSSTGQLGLLNCLDVRKNKIEDKGIRNICQLS 283
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
L+ L L + S G + LS + L ++++S T I D + +A L++LK L++ ++I
Sbjct: 284 GLQSLRLCANPITSEGAKILSEMVQLTNLSISETHIDDEGAKFIAQLTTLKYLDISTKRI 343
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE--ICGGGLTDAGVKHIKD 418
T G+ + L+ L LD+ I D G Y+ + L +L C GL G K + +
Sbjct: 344 TANGVKFICQLSKLISLDINWNNIGDEGVLYISRMQQLETLNAVYCNIGL--EGAKLLSE 401
Query: 419 LSSLTLLNLSQN 430
+ LT+L++ N
Sbjct: 402 MEQLTVLDVKIN 413
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 98/365 (26%), Positives = 167/365 (45%), Gaps = 27/365 (7%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++LSG++++ + + + S L L I + G+ + LS LT L+ N IT+
Sbjct: 74 LELSGNEISKNSMKFISQLSELTKLSVGLN-SIENEGINSIINLSKLTCLNIINAN-ITS 131
Query: 122 QGMKAFAGLINLVKLDLE------RCTRIHGGLVNLKGLM----KLESLNIKWC------ 165
+G+K L NL LD+ + G L NLK L+ +L L K
Sbjct: 132 EGVKLIGKLSNLTILDISGNLIGAEGGQYIGELKNLKTLVASDNELGVLGAKSIGEMNQL 191
Query: 166 -------NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
N I + K +S L+ L L + +++ D G L L+KLT NL+
Sbjct: 192 TSLCLIGNSIGNEGAKYISQLSQLTDLDLGKNEIGDEGFKLLAKLEKLT--NLDLVSNNI 249
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
+ L S LG L L++ + ++ D G ++ L+ L L N IT E L + L
Sbjct: 250 SDLSSTGQLGLLNCLDVRKNKIEDKGIRNICQLSGLQSLRLCANPITSEGAKILSEMVQL 309
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
+L++ I DEG + L LK L++S ++ ++G++ + L+ L S+++++ I D
Sbjct: 310 TNLSISETHIDDEGAKFIAQLTTLKYLDISTKRITANGVKFICQLSKLISLDINWNNIGD 369
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
+ ++ + L++LN I G L+ + LT LD+ RI G L N
Sbjct: 370 EGVLYISRMQQLETLNAVYCNIGLEGAKLLSEMEQLTVLDVKINRIPGEGIQLLENIARF 429
Query: 399 RSLEI 403
+SL +
Sbjct: 430 KSLVV 434
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 120/249 (48%), Gaps = 20/249 (8%)
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLE-------------------SLNLDSCGIGDEGL 293
+L LN+ +N+I+++ + L G+ +L+ LN++ + DE +
Sbjct: 3 NLTYLNIDWNKISEKSKIILSGMKHLKILAASGSEIDKFSRLDQLTELNVNWNRLKDEDV 62
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
++ L NL LELS ++ + ++ +S L+ L +++ I + + + LS L L
Sbjct: 63 ESIGNLKNLTLLELSGNEISKNSMKFISQLSELTKLSVGLNSIENEGINSIINLSKLTCL 122
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
N+ IT G+ + L+ LT LD+ G I G Y+ KNL++L L G
Sbjct: 123 NIINANITSEGVKLIGKLSNLTILDISGNLIGAEGGQYIGELKNLKTLVASDNELGVLGA 182
Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 473
K I +++ LT L L N + ++ + IS L+ L L++ + I G + L L+ L +
Sbjct: 183 KSIGEMNQLTSLCLIGNS-IGNEGAKYISQLSQLTDLDLGKNEIGDEGFKLLAKLEKLTN 241
Query: 474 LTLESCKVT 482
L L S ++
Sbjct: 242 LDLVSNNIS 250
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 96/201 (47%), Gaps = 30/201 (14%)
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
+ NL LN+D I ++ + L+G+ +LK L S +++
Sbjct: 1 MKNLTYLNIDWNKISEKSKIILSGMKHLKILAASGSEI---------------------- 38
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
K + L L LN++ ++ D + ++ +L LT L+L G I+ + ++
Sbjct: 39 -------DKFSRLDQLTELNVNWNRLKDEDVESIGNLKNLTLLELSGNEISKNSMKFISQ 91
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
L L + + + G+ I +LS LT LN+ N N+T + ++LI L+ L L++S
Sbjct: 92 LSELTKLSVGLNSIENEGINSIINLSKLTCLNII-NANITSEGVKLIGKLSNLTILDISG 150
Query: 455 SRITSAGLRHLKPLKNLRSLT 475
+ I + G +++ LKNL++L
Sbjct: 151 NLIGAEGGQYIGELKNLKTLV 171
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 104/228 (45%), Gaps = 5/228 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
SQ S L +DL +++ D G L L +LD ISD L L L L
Sbjct: 210 SQLSQLTDLDLGKNEIGDEGFKLLAKLEKLTNLDL-VSNNISD--LSSTGQLGLLNCLDV 266
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
R+ N I +G++ L L L L G L +++L +L+I + I D
Sbjct: 267 RK-NKIEDKGIRNICQLSGLQSLRLCANPITSEGAKILSEMVQLTNLSISETH-IDDEGA 324
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K ++ LT LK L IS ++T +G+ ++ L KL L++ + + +S + L L
Sbjct: 325 KFIAQLTTLKYLDISTKRITANGVKFICQLSKLISLDINWNNIGDEGVLYISRMQQLETL 384
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
N C + +G + S++ L VL++ N I E + L+ + +SL
Sbjct: 385 NAVYCNIGLEGAKLLSEMEQLTVLDVKINRIPGEGIQLLENIARFKSL 432
>gi|326505700|dbj|BAJ95521.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 661
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 146/498 (29%), Positives = 226/498 (45%), Gaps = 72/498 (14%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFC 91
++ +CL + GV + ++ + + L +VDLS D L S L+ L+ C
Sbjct: 106 VRQVCLARASGVGWRGLEALVAACPRLEAVDLSHCVGAGDREAAALAAASGLRELNLEKC 165
Query: 92 IQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLERCTRIHGGLV 149
+ ++D GL + G L +LSF+ I+ G+ +L LD+ + L
Sbjct: 166 LGVTDMGLAKVAVGCPRLETLSFKWCREISDIGVDLLVKKCRDLRSLDISYLKVSNESLR 225
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYL----KGL 203
++ L KLE L + C+CI D ++ LS G +L+S+ +S C+ VT G+A L L
Sbjct: 226 SISTLEKLEELAMVACSCIDDEGLELLSRGSNSLQSVDVSRCNHVTSQGLASLIDGHSFL 285
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
QKL AA DSL +G F L + +L VL L E
Sbjct: 286 QKLN----------AA--DSLHEIGQNFLSKL------------VTLKATLTVLRLDGFE 321
Query: 264 ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCN-------------------- 301
++ L + +G TNL + L C G+ DEG+ +L C+
Sbjct: 322 VSSSLLSAIGEGCTNLVEIGLSKCNGVTDEGISSLVARCSYLRKIDLTCCNLVTNDSLDS 381
Query: 302 -------LKCLEL-SDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
L+CL L S + + GL + S NL+ I+L+ G++D +L LA S L
Sbjct: 382 IADNCKMLECLRLESCSSINEKGLERIASCCPNLKEIDLTDCGVNDEALHHLAKCSELLI 441
Query: 353 LNLD-ARQITDTGLAALTSLTG-LTHLDLFG-ARITDSGAAYLRN-FKNLRSLEICG-GG 407
L L + I+D GL ++S G L LDL+ + ITD G A L N K ++ L +C
Sbjct: 442 LKLGLSSSISDKGLGFISSKCGKLIELDLYRCSSITDDGLAALANGCKKIKLLNLCYCNK 501
Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSNSR-ITSAGLRHL 465
+TD+G+ H+ L LT L L +T + ++ G LV L++ + +GL L
Sbjct: 502 ITDSGLSHLGALEELTNLELRCLVRITGIGISSVVIGCKSLVELDLKRCYSVDDSGLWAL 561
Query: 466 KPLK-NLRSLTLESCKVT 482
NLR LT+ C+VT
Sbjct: 562 ARYALNLRQLTISYCQVT 579
>gi|290976253|ref|XP_002670855.1| predicted protein [Naegleria gruberi]
gi|284084418|gb|EFC38111.1| predicted protein [Naegleria gruberi]
Length = 286
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 133/273 (48%), Gaps = 3/273 (1%)
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
CN + D +S L SL + +++ +G + +++LT LN++ V S+
Sbjct: 11 CNQLGDESAHKISQFKQLTSLGVENNEIGPTGAKSISTMKQLTSLNIKNNSVGVEGAHSI 70
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
S + L +L+++ + D+G + ++ L LN+ +N+IT ++ K + L LN+
Sbjct: 71 SNMTRLTHLDISLNNIGDEGAKIICQLKQLTNLNISYNQITSNGMIPFKEMKQLIILNVG 130
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
S IG+EG+ N++GL L L++ G+ G + +S LTNL + I + + +
Sbjct: 131 SNRIGNEGIENISGLSQLTELDIGGCDFGNEGAKSISQLTNLTCLYCCSNNIREEGAKSI 190
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
+ L + LNL + G ++ + LTHL + I D GA L +NL+ L I
Sbjct: 191 SQLEKVTCLNLCVNYLHADGAKHISQMKQLTHLYMDSNEIGDDGAEDLCGLENLKVLSIR 250
Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
G ++ V+ I +L T + NL D+T
Sbjct: 251 GNNISYDMVQAIHELGKFT---VESEGNLFDET 280
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 109/231 (47%), Gaps = 1/231 (0%)
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+ L L+L N++ DE + L SL +++ IG G +++ + L L + +
Sbjct: 1 MSQLTELSLECNQLGDESAHKISQFKQLTSLGVENNEIGPTGAKSISTMKQLTSLNIKNN 60
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
VG G +S +T L +++S I D + + L L +LN+ QIT G+
Sbjct: 61 SVGVEGAHSISNMTRLTHLDISLNNIGDEGAKIICQLKQLTNLNISYNQITSNGMIPFKE 120
Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
+ L L++ RI + G + L L+I G + G K I L++LT L N
Sbjct: 121 MKQLIILNVGSNRIGNEGIENISGLSQLTELDIGGCDFGNEGAKSISQLTNLTCLYCCSN 180
Query: 431 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
N+ ++ + IS L + LN+ + + + G +H+ +K L L ++S ++
Sbjct: 181 -NIREEGAKSISQLEKVTCLNLCVNYLHADGAKHISQMKQLTHLYMDSNEI 230
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 1/143 (0%)
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
+S L L+L+ Q+ D ++ LT L + I +GA + K L SL I
Sbjct: 1 MSQLTELSLECNQLGDESAHKISQFKQLTSLGVENNEIGPTGAKSISTMKQLTSLNIKNN 60
Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 466
+ G I +++ LT L++S N N+ D+ ++I L L +LN+S ++ITS G+ K
Sbjct: 61 SVGVEGAHSISNMTRLTHLDISLN-NIGDEGAKIICQLKQLTNLNISYNQITSNGMIPFK 119
Query: 467 PLKNLRSLTLESCKVTANDIKRL 489
+K L L + S ++ I+ +
Sbjct: 120 EMKQLIILNVGSNRIGNEGIENI 142
Score = 45.4 bits (106), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 103/227 (45%), Gaps = 35/227 (15%)
Query: 59 LLSVDLSGSDVTDSG---LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
L +D+S +++ D G + LK +NL ++ +N QI+ G+ + + L L+
Sbjct: 76 LTHLDISLNNIGDEGAKIICQLKQLTNL-NISYN---QITSNGMIPFKEMKQLIILNVG- 130
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+N I +G++ +GL L +LD+ C + K
Sbjct: 131 SNRIGNEGIENISGLSQLTELDIGGCD-------------------------FGNEGAKS 165
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
+S LTNL L + + + G + L+K+T LNL + A +S + L +L +
Sbjct: 166 ISQLTNLTCLYCCSNNIREEGAKSISQLEKVTCLNLCVNYLHADGAKHISQMKQLTHLYM 225
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL--VHLKGLTNLES 280
+ ++ DDG E + +LKVL++ N I+ + + +H G +ES
Sbjct: 226 DSNEIGDDGAEDLCGLENLKVLSIRGNNISYDMVQAIHELGKFTVES 272
>gi|300694035|ref|YP_003750008.1| type III effector protein [Ralstonia solanacearum PSI07]
gi|299076072|emb|CBJ35382.1| putative leucine-rich-repeat type III effector protein (GALA1-like)
[Ralstonia solanacearum PSI07]
Length = 590
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 125/426 (29%), Positives = 192/426 (45%), Gaps = 8/426 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRR 115
++L + LSG DVTD L L ++L++LD + C QI+ G+ HL L L L+
Sbjct: 121 AALEKLTLSG-DVTDDDLKGLP--ASLKALDLSDCRAQITSEGIAHLSKLP-LVRLNVSH 176
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N I A+G + A + L +LD+ G L L LN+ N I D +
Sbjct: 177 NR-IDAEGARLLAAMPTLTELDISHNDIRADGAQALADSATLTLLNVG-NNRIGDRGAQA 234
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ T L SL S + + +G+ L L L+L + +L+ +L LN+
Sbjct: 235 LAANTKLTSLNASANGIGSAGVQALAANATLAALDLSCTSIDEESAQALARNTTLTSLNV 294
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
+L D G + +L LN+ NEI E L T+L SL++ +G +G
Sbjct: 295 RLSRLGDAGARALAATTTLTSLNVSLNEIGPEGAKALANNTSLTSLDIGGNKVGVDGAQA 354
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
L L L + ++ +G + L+ T L S+++S G+ R +L SL +
Sbjct: 355 LATSMTLTSLVIHRNRIEVAGAQALANNTRLTSLDISDNGLGVWGARAFVDNETLTSLRI 414
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
I D G L T LT LD+ RI ++GA L L SL I G + GV
Sbjct: 415 ATNMIGDEGAKWLARNTTLTSLDIGENRIGETGAQALAGNTKLTSLNISGNAIGMMGVLR 474
Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
+ ++L LN+S+N +L T L SL V+ + I + G R L K L SL+
Sbjct: 475 LARNTTLAALNVSRNQIGVAGAQDLARNTT-LRSLVVNYNEIGNEGARALAGNKTLASLS 533
Query: 476 LESCKV 481
+ C++
Sbjct: 534 VVDCRI 539
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 118/252 (46%), Gaps = 3/252 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L S+++S +++ G L + ++L SLD ++ G + L LTSL RN
Sbjct: 311 TTLTSLNVSLNEIGPEGAKALANNTSLTSLDIGGN-KVGVDGAQALATSMTLTSLVIHRN 369
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
I G +A A L LD+ G L SL I N I D K L
Sbjct: 370 R-IEVAGAQALANNTRLTSLDISDNGLGVWGARAFVDNETLTSLRIA-TNMIGDEGAKWL 427
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ T L SL I +++ ++G L G KLT LN+ G + + L+ +L LN++
Sbjct: 428 ARNTTLTSLDIGENRIGETGAQALAGNTKLTSLNISGNAIGMMGVLRLARNTTLAALNVS 487
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
R Q+ G + ++ +L+ L + +NEI +E L G L SL++ C IGDEG L
Sbjct: 488 RNQIGVAGAQDLARNTTLRSLVVNYNEIGNEGARALAGNKTLASLSVVDCRIGDEGAHAL 547
Query: 297 TGLCNLKCLELS 308
L L++S
Sbjct: 548 AANTTLALLDVS 559
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 106/380 (27%), Positives = 175/380 (46%), Gaps = 11/380 (2%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L +D+S +D+ G L D + L L+ +I D G + L + LTSL+ N
Sbjct: 192 TLTELDISHNDIRADGAQALADSATLTLLNVGNN-RIGDRGAQALAANTKLTSLNASAN- 249
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
I + G++A A L LDL CT I L L SLN++ + D+ + L
Sbjct: 250 GIGSAGVQALAANATLAALDLS-CTSIDEESAQALARNTTLTSLNVRLSR-LGDAGARAL 307
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ T L SL +S +++ G L LT L++ G V +L+ +L L ++
Sbjct: 308 AATTTLTSLNVSLNEIGPEGAKALANNTSLTSLDIGGNKVGVDGAQALATSMTLTSLVIH 367
Query: 237 RCQLSDDGCEKFS---KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
R ++ G + + ++ SL + + G V + LT SL + + IGDEG
Sbjct: 368 RNRIEVAGAQALANNTRLTSLDISDNGLGVWGARAFVDNETLT---SLRIATNMIGDEGA 424
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L L L++ + ++G +G + L+G T L S+N+S I + +LA ++L +L
Sbjct: 425 KWLARNTTLTSLDIGENRIGETGAQALAGNTKLTSLNISGNAIGMMGVLRLARNTTLAAL 484
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
N+ QI G L T L L + I + GA L K L SL + + D G
Sbjct: 485 NVSRNQIGVAGAQDLARNTTLRSLVVNYNEIGNEGARALAGNKTLASLSVVDCRIGDEGA 544
Query: 414 KHIKDLSSLTLLNLSQNCNL 433
+ ++L LL++S N ++
Sbjct: 545 HALAANTTLALLDVSLNRHI 564
>gi|290970038|ref|XP_002668017.1| predicted protein [Naegleria gruberi]
gi|284081041|gb|EFC35273.1| predicted protein [Naegleria gruberi]
Length = 306
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 131/271 (48%), Gaps = 26/271 (9%)
Query: 160 LNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+N+K + DS +K +S + L SL IS +++ G+ ++ G+++LT L++
Sbjct: 55 INLKVFRYLLDSFEKLKFISDMKRLTSLDISFNQIGVQGVKFISGMKQLTSLDI------ 108
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
+ N Q SD+G + S++ L L + N I DE ++ +
Sbjct: 109 ----------------SFN--QASDEGAKYISEMKQLTSLGISKNLIGDEGAKYISEMKQ 150
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L SLNL I DEG ++ + L L++S + G++ + + L S+N+ + GI
Sbjct: 151 LTSLNLYYNEICDEGAKYISEMEQLTSLDISSNLIDVEGVKFIKEMKQLTSLNIYYNGIG 210
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
+ ++ + L SLN+ +I D G ++ + L L + +I D GA Y+ +
Sbjct: 211 VEGAKYISEMKQLTSLNITNNEIGDEGAKYISEMKQLISLIISRNQIGDEGAKYICEMEQ 270
Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
L SL I G + D G K+I D+ LT L++S
Sbjct: 271 LTSLNISGNEIGDEGAKYISDMKQLTSLDIS 301
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 120/235 (51%), Gaps = 7/235 (2%)
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
E L + + L SL++ IG +G+ ++G+ L L++S Q G +++S + L
Sbjct: 68 EKLKFISDMKRLTSLDISFNQIGVQGVKFISGMKQLTSLDISFNQASDEGAKYISEMKQL 127
Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
S+ +S I D + ++ + L SLNL +I D G ++ + LT LD+ I
Sbjct: 128 TSLGISKNLIGDEGAKYISEMKQLTSLNLYYNEICDEGAKYISEMEQLTSLDISSNLIDV 187
Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 446
G +++ K L SL I G+ G K+I ++ LT LN++ N + D+ + IS +
Sbjct: 188 EGVKFIKEMKQLTSLNIYYNGIGVEGAKYISEMKQLTSLNITNN-EIGDEGAKYISEMKQ 246
Query: 447 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV------TANDIKRLQSRDLP 495
L+SL +S ++I G +++ ++ L SL + ++ +D+K+L S D+
Sbjct: 247 LISLIISRNQIGDEGAKYICEMEQLTSLNISGNEIGDEGAKYISDMKQLTSLDIS 301
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 116/233 (49%), Gaps = 1/233 (0%)
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
L +S + L L+++ Q+ G + S + L L++ FN+ +DE ++ + L S
Sbjct: 70 LKFISDMKRLTSLDISFNQIGVQGVKFISGMKQLTSLDISFNQASDEGAKYISEMKQLTS 129
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
L + IGDEG ++ + L L L ++ G +++S + L S+++S I
Sbjct: 130 LGISKNLIGDEGAKYISEMKQLTSLNLYYNEICDEGAKYISEMEQLTSLDISSNLIDVEG 189
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
++ + + L SLN+ I G ++ + LT L++ I D GA Y+ K L S
Sbjct: 190 VKFIKEMKQLTSLNIYYNGIGVEGAKYISEMKQLTSLNITNNEIGDEGAKYISEMKQLIS 249
Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
L I + D G K+I ++ LT LN+S N + D+ + IS + L SL++S
Sbjct: 250 LIISRNQIGDEGAKYICEMEQLTSLNISGN-EIGDEGAKYISDMKQLTSLDIS 301
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 115/237 (48%), Gaps = 6/237 (2%)
Query: 99 LEHLRGLSNLTSL--SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 156
L+ + + LTSL SF N I QG+K +G+ L LD+ G + + +
Sbjct: 70 LKFISDMKRLTSLDISF---NQIGVQGVKFISGMKQLTSLDISFNQASDEGAKYISEMKQ 126
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L SL I N I D K +S + L SL + +++ D G Y+ +++LT L++ +
Sbjct: 127 LTSLGIS-KNLIGDEGAKYISEMKQLTSLNLYYNEICDEGAKYISEMEQLTSLDISSNLI 185
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
+ + + L LN+ + +G + S++ L LN+ NEI DE ++ +
Sbjct: 186 DVEGVKFIKEMKQLTSLNIYYNGIGVEGAKYISEMKQLTSLNITNNEIGDEGAKYISEMK 245
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
L SL + IGDEG + + L L +S ++G G +++S + L S+++SF
Sbjct: 246 QLISLIISRNQIGDEGAKYICEMEQLTSLNISGNEIGDEGAKYISDMKQLTSLDISF 302
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 141/314 (44%), Gaps = 38/314 (12%)
Query: 6 ISQQIFN------ELV--YSRCLTEVSLEAFRDCALQD--LCLGQYPGVNDKWMDV-IAS 54
IS+Q FN +LV + + TE +E F ++ + L + + D + + S
Sbjct: 15 ISKQFFNVIKERSKLVIQFKQKFTEKRVELFMKSQFRNRIINLKVFRYLLDSFEKLKFIS 74
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
L S+D+S + + G+ + L SLD +F Q SD G +++ + LTSL
Sbjct: 75 DMKRLTSLDISFNQIGVQGVKFISGMKQLTSLDISFN-QASDEGAKYISEMKQLTSLGIS 133
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+ N I +G K + + L L+L + N I D K
Sbjct: 134 K-NLIGDEGAKYISEMKQLTSLNL-------------------------YYNEICDEGAK 167
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+S + L SL IS + + G+ ++K +++LT LN+ + +S + L LN
Sbjct: 168 YISEMEQLTSLDISSNLIDVEGVKFIKEMKQLTSLNIYYNGIGVEGAKYISEMKQLTSLN 227
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+ ++ D+G + S++ L L + N+I DE ++ + L SLN+ IGDEG
Sbjct: 228 ITNNEIGDEGAKYISEMKQLISLIISRNQIGDEGAKYICEMEQLTSLNISGNEIGDEGAK 287
Query: 295 NLTGLCNLKCLELS 308
++ + L L++S
Sbjct: 288 YISDMKQLTSLDIS 301
>gi|384253405|gb|EIE26880.1| RNI-like protein [Coccomyxa subellipsoidea C-169]
Length = 641
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 133/475 (28%), Positives = 206/475 (43%), Gaps = 78/475 (16%)
Query: 55 QGSSLLSVDLSGSDVTDSG---------LIHLKDCSNLQSLD-FNFCIQISDGGLEHLRG 104
+G++L +DLSG D+T L L+ + Q L ++ C Q+ D E L
Sbjct: 57 RGTTLRKLDLSGCDLTMPAGTLLDLLWNLTQLEHLAIAQQLPKYDACFQVDDELCEALGR 116
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT-RIHGGLVNLKGLMKLESLNI- 162
+ LT L R+ + IT +G+ AGL L L L C + ++ +L L+I
Sbjct: 117 MRGLTHLDLRQPSPITGRGLDRLAGLERLRTLRLGPCAGLLDSSFQSIACHTQLTELDIC 176
Query: 163 -----KWCNCITDSDMKPLSGLTNLKSLQIS---CSKVTDSGIAYLKGLQKLTLLNLEGC 214
+ C + + L+ L NL SLQ++ S+ D + L L LT L L
Sbjct: 177 FGEKGRTCTSLPAEVLAQLATLPNLVSLQLAGFDTSRTED--LPSLHCLSTLTHLGLSQV 234
Query: 215 -----PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDEC 268
P A + SL L LN+C + D S+ +L+ L++ + +
Sbjct: 235 TNSRSPGGVATFLRCMPIQSLIRLELNQCNIGIDVFPLISQATTLRALSVTQCSPVYGLD 294
Query: 269 LVHLKGLTNLESLNLD---------------------SCGIGDEGLV-----NLTGLC-- 300
L H+ GL+ LESL LD SC + L N+ GL
Sbjct: 295 LHHMSGLSRLESLTLDHSHPLSSNWSFLQHLTRLTQFSCAAHKDALPMSSDHNIAGLLEN 354
Query: 301 -----NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS-----------LRKL 344
+L+ L+L +G L ++ LT L +++S G S L +L
Sbjct: 355 AIARKDLQRLDLRGHLLGKE-LGDIAALTALTELDISAAGCDVASHPSIACVFNLGLAQL 413
Query: 345 AGLSSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
AGLS L+ LNL + + GL + S L L HLDL G+ + D+ A+L L+SL I
Sbjct: 414 AGLSRLQRLNLACTAVDEEGLRGICSGLRELLHLDLSGSAVEDADLAHLTKLPRLQSLRI 473
Query: 404 CGGG----LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
++DAG+ + +S+L L + N +T L+ +S LTGL L+VS+
Sbjct: 474 NNQPALDDISDAGLAEVSRVSALRCLEVKGNQCITAAGLKHLSALTGLSDLDVSD 528
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFN---FCIQISDGGL 99
V+++ + I S LL +DLSGS V D+ L HL LQSL N ISD GL
Sbjct: 428 AVDEEGLRGICSGLRELLHLDLSGSAVEDADLAHLTKLPRLQSLRINNQPALDDISDAGL 487
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKL 157
+ +S L L + N ITA G+K + L L LD+ C+ I+ L +L+G L
Sbjct: 488 AEVSRVSALRCLEVKGNQCITAAGLKHLSALTGLSDLDVSDCSAINPKRALNSLQGCTAL 547
Query: 158 ESL 160
L
Sbjct: 548 RML 550
>gi|374850803|dbj|BAL53782.1| hypothetical conserved protein, partial [uncultured planctomycete]
Length = 351
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 88/305 (28%), Positives = 146/305 (47%), Gaps = 28/305 (9%)
Query: 166 NCITDSDMKPLSGLTN--LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
N I D ++ L+ + + SL +S +++T G + L+ L L L V L
Sbjct: 72 NLIGDVEIAKLASIPEVCICSLDLSHARLTPQGWRKIAELRALRELYLADSNVDDEDLQY 131
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L+ LGSL L+L + G + +I +L+VL L +I DE + + LT LE L+L
Sbjct: 132 LANLGSLETLDLAWTPMKGTGLKHVGQIRNLRVLLLTHTKIADEHIAQIVPLTKLEKLDL 191
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
+ D+G+ ++ L NLK L ++ + + L+ L L ++ LS + ++ +
Sbjct: 192 GGTLVTDKGMEFVSRLANLKDLRCPES-LTDDATKLLARLVQLRTLCLSSSCVTSQGVES 250
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
L LS L+SL+L +I D L +T L+ L HL L ITD+ A + F NL+SL +
Sbjct: 251 LKTLSELRSLDLSRTKIDDRALDQITVLSKLEHLLLSETNITDAVAPVIGRFMNLKSLFL 310
Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
G ++D+ ++ + + +L LNLS+ +T GL+
Sbjct: 311 DGTKISDSVLQEVGKVHTLERLNLSKTA-------------------------VTGEGLQ 345
Query: 464 HLKPL 468
HL PL
Sbjct: 346 HLTPL 350
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 129/255 (50%), Gaps = 6/255 (2%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+T QG + A L L +L L L L L LE+L++ W + + +K +
Sbjct: 100 LTPQGWRKIAELRALRELYLADSNVDDEDLQYLANLGSLETLDLAW-TPMKGTGLKHVGQ 158
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ NL+ L ++ +K+ D IA + L KL L+L G VT ++ +S L +L L RC
Sbjct: 159 IRNLRVLLLTHTKIADEHIAQIVPLTKLEKLDLGGTLVTDKGMEFVSRLANLKDL---RC 215
Query: 239 Q--LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
L+DD + +++ L+ L L + +T + + LK L+ L SL+L I D L +
Sbjct: 216 PESLTDDATKLLARLVQLRTLCLSSSCVTSQGVESLKTLSELRSLDLSRTKIDDRALDQI 275
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
T L L+ L LS+T + + + NL+S+ L T ISD L+++ + +L+ LNL
Sbjct: 276 TVLSKLEHLLLSETNITDAVAPVIGRFMNLKSLFLDGTKISDSVLQEVGKVHTLERLNLS 335
Query: 357 ARQITDTGLAALTSL 371
+T GL LT L
Sbjct: 336 KTAVTGEGLQHLTPL 350
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 104/203 (51%), Gaps = 2/203 (0%)
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
SL+L + +G + L L+ L L+D+ V L++L+ L +LE+++L++T +
Sbjct: 92 SLDLSHARLTPQGWRKIAELRALRELYLADSNVDDEDLQYLANLGSLETLDLAWTPMKGT 151
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ + + +L+ L L +I D +A + LT L LDL G +TD G ++ NL+
Sbjct: 152 GLKHVGQIRNLRVLLLTHTKIADEHIAQIVPLTKLEKLDLGGTLVTDKGMEFVSRLANLK 211
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L C LTD K + L L L LS +C +T + +E + L+ L SL++S ++I
Sbjct: 212 DLR-CPESLTDDATKLLARLVQLRTLCLSSSC-VTSQGVESLKTLSELRSLDLSRTKIDD 269
Query: 460 AGLRHLKPLKNLRSLTLESCKVT 482
L + L L L L +T
Sbjct: 270 RALDQITVLSKLEHLLLSETNIT 292
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 124/277 (44%), Gaps = 35/277 (12%)
Query: 24 SLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNL 83
L A R+ L D V+D+ + +A+ GS L ++DL+ + + +GL H+ NL
Sbjct: 110 ELRALRELYLAD------SNVDDEDLQYLANLGS-LETLDLAWTPMKGTGLKHVGQIRNL 162
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143
+ L +I+D + + L+ L L +T +GM+ + L NL L RC
Sbjct: 163 RVLLLTHT-KIADEHIAQIVPLTKLEKLDL-GGTLVTDKGMEFVSRLANLKDL---RCP- 216
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
ESL TD K L+ L L++L +S S VT G+ LK L
Sbjct: 217 --------------ESL--------TDDATKLLARLVQLRTLCLSSSCVTSQGVESLKTL 254
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
+L L+L + LD ++ L L +L L+ ++D + +LK L L +
Sbjct: 255 SELRSLDLSRTKIDDRALDQITVLSKLEHLLLSETNITDAVAPVIGRFMNLKSLFLDGTK 314
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
I+D L + + LE LNL + EGL +LT L
Sbjct: 315 ISDSVLQEVGKVHTLERLNLSKTAVTGEGLQHLTPLA 351
Score = 42.0 bits (97), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
SL++ LT G + I +L +L L L+ + N+ D+ L+ ++ L L +L+++ + +
Sbjct: 92 SLDLSHARLTPQGWRKIAELRALRELYLA-DSNVDDEDLQYLANLGSLETLDLAWTPMKG 150
Query: 460 AGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
GL+H+ ++NLR L L K+ I ++
Sbjct: 151 TGLKHVGQIRNLRVLLLTHTKIADEHIAQI 180
>gi|432942786|ref|XP_004083072.1| PREDICTED: F-box/LRR-repeat protein 14-like [Oryzias latipes]
Length = 400
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 172/336 (51%), Gaps = 44/336 (13%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ G+ N++SL +S C +TD+G+ A+++ + L +LNL C S+LG +
Sbjct: 86 IQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITD-----SSLGRIAQ 140
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDE 291
N L GC + G L V GL L+SLNL SC + D
Sbjct: 141 YLKNLEMLELGGCSNITNTGLLLVA---------------WGLHRLKSLNLRSCRHVSDV 185
Query: 292 GLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGS 340
G+ +L G+ NL+ L L D Q + L+H+S GLT L +NLSF G ISD
Sbjct: 186 GIGHLAGMTRSAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLTKLRVLNLSFCGGISDAG 245
Query: 341 LRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNF 395
+ L+ + SL SLNL + I+DTG A+ SL L+ LD+ F +I D AY+ +
Sbjct: 246 MIHLSHMGSLWSLNLRSCDNISDTGTMHLAMGSLR-LSGLDVSFCDKIGDQTLAYIAQGL 304
Query: 396 KNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVS 453
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ LT LV +++
Sbjct: 305 YQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLVGIDLY 364
Query: 454 N-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
++IT GL + L L+ L L ++T ++ R
Sbjct: 365 GCTKITKRGLERITQLPCLKVLNLGLWQMTESEKVR 400
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 100/307 (32%), Positives = 169/307 (55%), Gaps = 26/307 (8%)
Query: 82 NLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDL 138
N++SL+ + C ++D GL H ++ + +L L+ IT + A + NL L+L
Sbjct: 91 NIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLGRIAQYLKNLEMLEL 150
Query: 139 ERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLKSLQIS 188
C+ I G L+ GL +L+SLN++ C ++D + L+G+T NL+ L +
Sbjct: 151 GGCSNITNTGLLLVAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLNLEYLTLQ 210
Query: 189 -CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
C K+TD + ++ KGL KL +LNL C ++ A + LS +GSL+ LNL C +SD G
Sbjct: 211 DCQKLTDLSLKHISKGLTKLRVLNLSFCGGISDAGMIHLSHMGSLWSLNLRSCDNISDTG 270
Query: 245 CEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT-GL 299
+ +GSL++ L++ F ++I D+ L ++ +GL L+SL+L SC I D+G+ + +
Sbjct: 271 TMHLA-MGSLRLSGLDVSFCDKIGDQTLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQM 329
Query: 300 CNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLD 356
L+ L + ++ GL ++ LT L I+L T I+ L ++ L LK LNL
Sbjct: 330 HELRTLNIGQCVRITDKGLELIADHLTQLVGIDLYGCTKITKRGLERITQLPCLKVLNLG 389
Query: 357 ARQITDT 363
Q+T++
Sbjct: 390 LWQMTES 396
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 167/327 (51%), Gaps = 32/327 (9%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 121
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC-P 215
LN+ C ITDS + ++ L NL+ L++ CS +T++G+ + GL +L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKNLEMLELGGCSNITNTGLLLVAWGLHRLKSLNLRSCRH 181
Query: 216 VTAACLDSLSALG--------SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 264
V+ + L+ + +L YL L CQ L+D + SK + L+VLNL F I
Sbjct: 182 VSDVGIGHLAGMTRSAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLTKLRVLNLSFCGGI 241
Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS 321
+D ++HL + +L SLNL SC I D G ++L G L L++S ++G L +++
Sbjct: 242 SDAGMIHLSHMGSLWSLNLRSCDNISDTGTMHLAMGSLRLSGLDVSFCDKIGDQTLAYIA 301
Query: 322 -GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHL 377
GL L+S++L ISD + R + + L++LN+ +ITD GL + LT L +
Sbjct: 302 QGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLVGI 361
Query: 378 DLFG-ARITDSGAAYLRNFKNLRSLEI 403
DL+G +IT G + L+ L +
Sbjct: 362 DLYGCTKITKRGLERITQLPCLKVLNL 388
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 114/214 (53%), Gaps = 16/214 (7%)
Query: 69 VTDSGLIHL--------KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAI 119
V+D G+ HL + C NL+ L C +++D L+H+ +GL+ L L+ I
Sbjct: 182 VSDVGIGHLAGMTRSAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLTKLRVLNLSFCGGI 241
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLESLNIKWCNCITDSDMKPLS 177
+ GM + + +L L+L C I G ++L G ++L L++ +C+ I D + ++
Sbjct: 242 SDAGMIHLSHMGSLWSLNLRSCDNISDTGTMHLAMGSLRLSGLDVSFCDKIGDQTLAYIA 301
Query: 178 -GLTNLKSLQISCSKVTDSGI-AYLKGLQKLTLLNLEGC-PVTAACLDSLS-ALGSLFYL 233
GL LKSL + ++D GI ++ + +L LN+ C +T L+ ++ L L +
Sbjct: 302 QGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLVGI 361
Query: 234 NLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+L C +++ G E+ +++ LKVLNLG ++T+
Sbjct: 362 DLYGCTKITKRGLERITQLPCLKVLNLGLWQMTE 395
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 125/245 (51%), Gaps = 32/245 (13%)
Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 322
++G+ N+ESLNL C G+G + + L L C +++D+ +G R
Sbjct: 86 IQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLG----RIAQY 141
Query: 323 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 372
L NLE + L + I++ L +A GL LKSLNL + R ++D G+ L +T
Sbjct: 142 LKNLEMLELGGCSNITNTGLLLVAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGC 201
Query: 373 -GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNL 427
L +L L ++TD ++ + LR +L CGG ++DAG+ H+ + SL LNL
Sbjct: 202 LNLEYLTLQDCQKLTDLSLKHISKGLTKLRVLNLSFCGG-ISDAGMIHLSHMGSLWSLNL 260
Query: 428 SQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 484
N++D T+ L G L L+VS +I L ++ + L L+SL+L SC ++ +
Sbjct: 261 RSCDNISDTGTMHLAMGSLRLSGLDVSFCDKIGDQTLAYIAQGLYQLKSLSLCSCHISDD 320
Query: 485 DIKRL 489
I R+
Sbjct: 321 GINRM 325
>gi|410684076|ref|YP_006060083.1| leucine-rich-repeat type III effector protein (GALA1-like)
[Ralstonia solanacearum CMR15]
gi|299068565|emb|CBJ39793.1| leucine-rich-repeat type III effector protein (GALA1-like)
[Ralstonia solanacearum CMR15]
Length = 555
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 118/442 (26%), Positives = 197/442 (44%), Gaps = 33/442 (7%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRR 115
++L S+ L G TD L L ++L++LD + C QI+ G+ HL L L L+ R
Sbjct: 133 AALESLTLEGR-FTDEDLATLP--ASLKALDLSRCGRQITAAGIAHLSELP-LAELNVR- 187
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
NN I +G + A L L++ N I D+ +
Sbjct: 188 NNWIGDEGARLLAAHPTLTTLNVA-------------------------SNGIGDAGAQA 222
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ T L+SL IS +++ G+ L L LN+ + A +L+ +L LN
Sbjct: 223 LAANTRLESLDISFNEIGSDGVQALADNATLKTLNISSNDIGDAGALALAVNTTLTELNT 282
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
+ ++SD G + + SL L++ N D + + T L L++ + + G++
Sbjct: 283 SCNRISDAGAQALANSDSLTSLDISDNGFGDAGVQAIAANTRLRRLDISRNRLSEAGVLA 342
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
+ L L ++D ++G++G + L+ T L S++ GI + LA ++LK LNL
Sbjct: 343 VAANTTLTKLCIADCEIGTAGAQALAANTRLVSLDAGHNGIGTEGAQALARHATLKQLNL 402
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
+ I D G A L L+L G ++TDSG L LR+L + +T G K
Sbjct: 403 EKNPIGDAGAVAFADNATLRSLNLKGCKVTDSGLRVLATNATLRTLNVSDNRITAEGAKA 462
Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
S+LT L++S N + D+ ++ T L LN+ + +T G+ L L L
Sbjct: 463 TAANSTLTSLDVSHN-GIEDEGALALAANTVLNVLNICYNALTVKGVTALAASTTLAVLD 521
Query: 476 LESCKVTANDIKRLQSRDLPNL 497
+ +A I+R +P L
Sbjct: 522 IRENGYSAT-IERALQAAVPQL 542
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 102/371 (27%), Positives = 173/371 (46%), Gaps = 18/371 (4%)
Query: 17 SRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSV-------DLSGSDV 69
SRC +++ L +L L + V + W I +G+ LL+ +++ + +
Sbjct: 162 SRCGRQITAAGI--AHLSELPLAEL-NVRNNW---IGDEGARLLAAHPTLTTLNVASNGI 215
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
D+G L + L+SLD +F +I G++ L + L +L+ N+ I G A A
Sbjct: 216 GDAGAQALAANTRLESLDISFN-EIGSDGVQALADNATLKTLNISSND-IGDAGALALAV 273
Query: 130 LINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L +L+ C RI G L L SL+I N D+ ++ ++ T L+ L IS
Sbjct: 274 NTTLTELNTS-CNRISDAGAQALANSDSLTSLDIS-DNGFGDAGVQAIAANTRLRRLDIS 331
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
++++++G+ + LT L + C + A +L+A L L+ + +G +
Sbjct: 332 RNRLSEAGVLAVAANTTLTKLCIADCEIGTAGAQALAANTRLVSLDAGHNGIGTEGAQAL 391
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
++ +LK LNL N I D V L SLNL C + D GL L L+ L +S
Sbjct: 392 ARHATLKQLNLEKNPIGDAGAVAFADNATLRSLNLKGCKVTDSGLRVLATNATLRTLNVS 451
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
D ++ + G + + + L S+++S GI D LA + L LN+ +T G+ AL
Sbjct: 452 DNRITAEGAKATAANSTLTSLDVSHNGIEDEGALALAANTVLNVLNICYNALTVKGVTAL 511
Query: 369 TSLTGLTHLDL 379
+ T L LD+
Sbjct: 512 AASTTLAVLDI 522
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 136/298 (45%), Gaps = 4/298 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++++S +D+ D+G + L + L L+ + C +ISD G + L +LTSL +
Sbjct: 251 ATLKTLNISSNDIGDAGALALAVNTTLTELNTS-CNRISDAGAQALANSDSLTSLDI-SD 308
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N G++A A L +LD+ R G++ + L L I C I + + L
Sbjct: 309 NGFGDAGVQAIAANTRLRRLDISRNRLSEAGVLAVAANTTLTKLCIADCE-IGTAGAQAL 367
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ T L SL + + G L L LNLE P+ A + + +L LNL
Sbjct: 368 AANTRLVSLDAGHNGIGTEGAQALARHATLKQLNLEKNPIGDAGAVAFADNATLRSLNLK 427
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
C+++D G + +L+ LN+ N IT E + L SL++ GI DEG + L
Sbjct: 428 GCKVTDSGLRVLATNATLRTLNVSDNRITAEGAKATAANSTLTSLDVSHNGIEDEGALAL 487
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL-AGLSSLKSL 353
L L + + G+ L+ T L +++ G S R L A + LK+L
Sbjct: 488 AANTVLNVLNICYNALTVKGVTALAASTTLAVLDIRENGYSATIERALQAAVPQLKAL 545
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 110/245 (44%), Gaps = 28/245 (11%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G D + IA+ + L +D+S + ++++G++ + + L L C +I G + L
Sbjct: 310 GFGDAGVQAIAAN-TRLRRLDISRNRLSEAGVLAVAANTTLTKLCIADC-EIGTAGAQAL 367
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
+ L SL +N I +G +A A L +L+LE+ G V L SLN+
Sbjct: 368 AANTRLVSLDAG-HNGIGTEGAQALARHATLKQLNLEKNPIGDAGAVAFADNATLRSLNL 426
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
K C +TDS ++ L+ L++L +S +++T EG TAA
Sbjct: 427 KGCK-VTDSGLRVLATNATLRTLNVSDNRIT-----------------AEGAKATAAN-- 466
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
+L L+++ + D+G + L VLN+ +N +T + + L T L L+
Sbjct: 467 -----STLTSLDVSHNGIEDEGALALAANTVLNVLNICYNALTVKGVTALAASTTLAVLD 521
Query: 283 LDSCG 287
+ G
Sbjct: 522 IRENG 526
>gi|46447283|ref|YP_008648.1| hypothetical protein pc1649 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400924|emb|CAF24373.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 521
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 101/178 (56%), Gaps = 3/178 (1%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
S +TD+GL L +NLQ L+ N C +++D GL HL L NL L + +T++G+
Sbjct: 324 SCHHLTDTGLACLPSLTNLQYLNLNGCKKLTDAGLAHLTPLVNLQYLDLGFCDKLTSKGL 383
Query: 125 KAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
F LI L L+L C I GL +L L+ L+ LN+ C +TD+ + L L LK
Sbjct: 384 GHFKSLIALQHLNLSGCKFIRDNGLAHLTPLVALQYLNLSQCTFLTDAGLAHLVPLVALK 443
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ 239
L +S C+ +T++G+A+L L L LNL GC ++ A L L+ L SL +LNL C+
Sbjct: 444 HLDLSWCNSLTNAGLAHLVHLVALQYLNLSGCIYLSEAGLAHLAPLTSLQHLNLEDCE 501
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 115/208 (55%), Gaps = 7/208 (3%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E LN +TD+ + L NLK LQ+ SC +TD+G+A L L L LNL GC
Sbjct: 291 EIEGLNFSENAYLTDAHLLALKNCKNLKVLQLQSCHHLTDTGLACLPSLTNLQYLNLNGC 350
Query: 215 -PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVH 271
+T A L L+ L +L YL+L C +L+ G F + +L+ LNL G I D L H
Sbjct: 351 KKLTDAGLAHLTPLVNLQYLDLGFCDKLTSKGLGHFKSLIALQHLNLSGCKFIRDNGLAH 410
Query: 272 LKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESI 329
L L L+ LNL C + D GL +L L LK L+LS + ++GL HL L L+ +
Sbjct: 411 LTPLVALQYLNLSQCTFLTDAGLAHLVPLVALKHLDLSWCNSLTNAGLAHLVHLVALQYL 470
Query: 330 NLS-FTGISDGSLRKLAGLSSLKSLNLD 356
NLS +S+ L LA L+SL+ LNL+
Sbjct: 471 NLSGCIYLSEAGLAHLAPLTSLQHLNLE 498
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 113/221 (51%), Gaps = 26/221 (11%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LK+C NL+ L C ++D GL L L+NL L+ +T G+
Sbjct: 303 LTDAHLLALKNCKNLKVLQLQSCHHLTDTGLACLPSLTNLQYLNLNGCKKLTDAGLAHLT 362
Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+NL LDL C ++ GL + K L+ L+ LN+ C I D+ + L+ L L+ L +
Sbjct: 363 PLVNLQYLDLGFCDKLTSKGLGHFKSLIALQHLNLSGCKFIRDNGLAHLTPLVALQYLNL 422
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
S C+ +TD+G+A+L L L L+L C +T A L L L +L YLNL+ GC
Sbjct: 423 SQCTFLTDAGLAHLVPLVALKHLDLSWCNSLTNAGLAHLVHLVALQYLNLS-------GC 475
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
S+ G L HL LT+L+ LNL+ C
Sbjct: 476 IYLSEAG----------------LAHLAPLTSLQHLNLEDC 500
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 125/253 (49%), Gaps = 33/253 (13%)
Query: 246 EKFSKIGSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN 301
EK S ++ L F+E +TD L+ LK NL+ L L SC + D GL L L N
Sbjct: 282 EKILNYFSNEIEGLNFSENAYLTDAHLLALKNCKNLKVLQLQSCHHLTDTGLACLPSLTN 341
Query: 302 LKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-R 358
L+ L L+ ++ +GL HL+ L NL+ ++L F ++ L L +L+ LNL +
Sbjct: 342 LQYLNLNGCKKLTDAGLAHLTPLVNLQYLDLGFCDKLTSKGLGHFKSLIALQHLNLSGCK 401
Query: 359 QITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI 416
I D GLA LT L L +L+L +TD+G A+L L+ L++ LT+AG+ H+
Sbjct: 402 FIRDNGLAHLTPLVALQYLNLSQCTFLTDAGLAHLVPLVALKHLDLSWCNSLTNAGLAHL 461
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
L +L LNLS G + L + AGL HL PL +L+ L L
Sbjct: 462 VHLVALQYLNLS-----------------GCIYL-------SEAGLAHLAPLTSLQHLNL 497
Query: 477 ESCKVTANDIKRL 489
E C+ N RL
Sbjct: 498 EDCEHFTNARFRL 510
>gi|290994522|ref|XP_002679881.1| leucine rich repeat protein [Naegleria gruberi]
gi|284093499|gb|EFC47137.1| leucine rich repeat protein [Naegleria gruberi]
Length = 340
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 129/270 (47%), Gaps = 25/270 (9%)
Query: 224 LSALGSLFYLNLNRCQLSDD-GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
+ + L +L++ C + DD G + S + L LN+ N I E +L L L +L
Sbjct: 95 IGKMKQLTFLDIRNCSMIDDKGAKYVSALNQLTFLNISQNNIGPEGAKYLSKLDQLTNLK 154
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
++S IG EG +++ + L L +S+ +G G + +S ++
Sbjct: 155 INSNEIGPEGAKSISDMKQLTTLNISNNMIGMEGAKSISEIS------------------ 196
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
S L L++ + QI++ GL ++ ++ LT LD G I D GA YL KNLR L+
Sbjct: 197 -----SQLTILDISSNQISNEGLKFISEMSQLTSLDTNGNNIGDKGAKYLSELKNLRVLD 251
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
I + D G I L LT LN+S N + ++ +S + L LN+SN+ I AG
Sbjct: 252 ISKNFVYDNGADLISKLPQLTNLNISFN-EIGNQGAIYLSKMEKLTILNISNNLIGPAGA 310
Query: 463 RHLKPLKNLRSLTLESCKVTANDIKRLQSR 492
++L ++ L L + ++ +++ L +
Sbjct: 311 KYLGEMQQLTKLNINRNYLSVSELALLNKK 340
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 133/262 (50%), Gaps = 3/262 (1%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKG-LQKLTLLNLEGCP-VTAACLDSLSALGS 229
D+ P L+N+ ++ + + G +++LT L++ C + +SAL
Sbjct: 66 DLLPSRFLSNIVQFRVCVERKPGEMFYQIIGKMKQLTFLDIRNCSMIDDKGAKYVSALNQ 125
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L +LN+++ + +G + SK+ L L + NEI E + + L +LN+ + IG
Sbjct: 126 LTFLNISQNNIGPEGAKYLSKLDQLTNLKINSNEIGPEGAKSISDMKQLTTLNISNNMIG 185
Query: 290 DEGLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
EG +++ + L L++S Q+ + GL+ +S ++ L S++ + I D + L+ L
Sbjct: 186 MEGAKSISEISSQLTILDISSNQISNEGLKFISEMSQLTSLDTNGNNIGDKGAKYLSELK 245
Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
+L+ L++ + D G ++ L LT+L++ I + GA YL + L L I +
Sbjct: 246 NLRVLDISKNFVYDNGADLISKLPQLTNLNISFNEIGNQGAIYLSKMEKLTILNISNNLI 305
Query: 409 TDAGVKHIKDLSSLTLLNLSQN 430
AG K++ ++ LT LN+++N
Sbjct: 306 GPAGAKYLGEMQQLTKLNINRN 327
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 77/316 (24%), Positives = 145/316 (45%), Gaps = 11/316 (3%)
Query: 22 EVSLEAFRDCALQDL--CLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKD 79
E+ E R C QD + Y V+ +WM+VI L + + D L+ +
Sbjct: 16 EIIYEILRSCD-QDFKFIVMNYALVSKQWMNVIQWYSKLELKFEKKREHIDD--LLPSRF 72
Query: 80 CSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
SN+ + F C++ G + + + + LT L R + I +G K + L L L+
Sbjct: 73 LSNI--VQFRVCVERKPGEMFYQIIGKMKQLTFLDIRNCSMIDDKGAKYVSALNQLTFLN 130
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
+ + G L L +L +L I N I K +S + L +L IS + + G
Sbjct: 131 ISQNNIGPEGAKYLSKLDQLTNLKIN-SNEIGPEGAKSISDMKQLTTLNISNNMIGMEGA 189
Query: 198 AYLKGLQ-KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
+ + +LT+L++ ++ L +S + L L+ N + D G + S++ +L+V
Sbjct: 190 KSISEISSQLTILDISSNQISNEGLKFISEMSQLTSLDTNGNNIGDKGAKYLSELKNLRV 249
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
L++ N + D + L L +LN+ IG++G + L+ + L L +S+ +G +G
Sbjct: 250 LDISKNFVYDNGADLISKLPQLTNLNISFNEIGNQGAIYLSKMEKLTILNISNNLIGPAG 309
Query: 317 LRHLSGLTNLESINLS 332
++L + L +N++
Sbjct: 310 AKYLGEMQQLTKLNIN 325
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 113/242 (46%), Gaps = 26/242 (10%)
Query: 153 GLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
G MK L L+I+ C+ I D K +S L L L IS + + G YL L +LT L +
Sbjct: 96 GKMKQLTFLDIRNCSMIDDKGAKYVSALNQLTFLNISQNNIGPEGAKYLSKLDQLTNLKI 155
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS-LKVLNLGFNEITDECLV 270
+ S+S + L LN++ + +G + S+I S L +L++ N+I++E L
Sbjct: 156 NSNEIGPEGAKSISDMKQLTTLNISNNMIGMEGAKSISEISSQLTILDISSNQISNEGLK 215
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-------------------- 310
+ ++ L SL+ + IGD+G L+ L NL+ L++S
Sbjct: 216 FISEMSQLTSLDTNGNNIGDKGAKYLSELKNLRVLDISKNFVYDNGADLISKLPQLTNLN 275
Query: 311 ----QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
++G+ G +LS + L +N+S I + L + L LN++ ++ + LA
Sbjct: 276 ISFNEIGNQGAIYLSKMEKLTILNISNNLIGPAGAKYLGEMQQLTKLNINRNYLSVSELA 335
Query: 367 AL 368
L
Sbjct: 336 LL 337
>gi|290972196|ref|XP_002668843.1| predicted protein [Naegleria gruberi]
gi|284082373|gb|EFC36099.1| predicted protein [Naegleria gruberi]
Length = 348
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 132/245 (53%), Gaps = 13/245 (5%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
+ + SK+ +LK LN+ N I +E L+ + L NL +LN+++ IGDEG+ +++ L NL
Sbjct: 8 NDVQDISKLVNLKTLNISINNIGNEGLIIVCNLINLTNLNIENNDIGDEGVQDISKLVNL 67
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI--SDGSLRKLAGLSSLKSLNLDARQI 360
L + + S G + +S LTNL S+N++ + S+ +L S N QI
Sbjct: 68 TNLNIKSNALRSKGAQEISKLTNLTSLNVAENNVMLSEKNL----------SRNNITHQI 117
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
+ G+ ++ +L LT+L++ I D G + NL +L+I + D G+K I +L
Sbjct: 118 ENDGIKSIFNLINLTNLNIQNNDIGDEGVQDISKLINLTNLDIGNNKIRDEGIKSIFNLI 177
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
+LT LN+ QN ++ D+ ++ IS L L +L++ ++I G + + L NL L +
Sbjct: 178 NLTNLNI-QNNDIGDEGVQDISKLINLTNLDICQTKIGDNGAKEICKLINLTKLVCWNTD 236
Query: 481 VTAND 485
+ N+
Sbjct: 237 IATNN 241
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 120/232 (51%), Gaps = 18/232 (7%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
++ + L NL +L+ NN I +G+ LINL L++E G+ ++ L+ L
Sbjct: 10 VQDISKLVNLKTLNISINN-IGNEGLIIVCNLINLTNLNIENNDIGDEGVQDISKLVNLT 68
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+LNIK N + + +S LTNL SL ++ + V L+ NL +T
Sbjct: 69 NLNIK-SNALRSKGAQEISKLTNLTSLNVAENNVM------------LSEKNLSRNNITH 115
Query: 219 AC----LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
+ S+ L +L LN+ + D+G + SK+ +L L++G N+I DE + +
Sbjct: 116 QIENDGIKSIFNLINLTNLNIQNNDIGDEGVQDISKLINLTNLDIGNNKIRDEGIKSIFN 175
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
L NL +LN+ + IGDEG+ +++ L NL L++ T++G +G + + L NL
Sbjct: 176 LINLTNLNIQNNDIGDEGVQDISKLINLTNLDICQTKIGDNGAKEICKLINL 227
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 108/210 (51%), Gaps = 23/210 (10%)
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
+ + ++G+ ++ +S L NL+++N+S I + L + L +L +LN++ I D G+
Sbjct: 1 MENNKIGND-VQDISKLVNLKTLNISINNIGNEGLIIVCNLINLTNLNIENNDIGDEGVQ 59
Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG----------------LTD 410
++ L LT+L++ + GA + NL SL + + +
Sbjct: 60 DISKLVNLTNLNIKSNALRSKGAQEISKLTNLTSLNVAENNVMLSEKNLSRNNITHQIEN 119
Query: 411 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 470
G+K I +L +LT LN+ QN ++ D+ ++ IS L L +L++ N++I G++ + L N
Sbjct: 120 DGIKSIFNLINLTNLNI-QNNDIGDEGVQDISKLINLTNLDIGNNKIRDEGIKSIFNLIN 178
Query: 471 LRSLTLESCKVTANDIKRLQSRDLPNLVSF 500
L +L +++ NDI +D+ L++
Sbjct: 179 LTNLNIQN-----NDIGDEGVQDISKLINL 203
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 111/228 (48%), Gaps = 17/228 (7%)
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
+I + ++ L+ L++LNI N I + + + L NL +L I + + D G+ +
Sbjct: 4 NKIGNDVQDISKLVNLKTLNIS-INNIGNEGLIIVCNLINLTNLNIENNDIGDEGVQDIS 62
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC----------------QLSDDGC 245
L LT LN++ + + +S L +L LN+ Q+ +DG
Sbjct: 63 KLVNLTNLNIKSNALRSKGAQEISKLTNLTSLNVAENNVMLSEKNLSRNNITHQIENDGI 122
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
+ + +L LN+ N+I DE + + L NL +L++ + I DEG+ ++ L NL L
Sbjct: 123 KSIFNLINLTNLNIQNNDIGDEGVQDISKLINLTNLDIGNNKIRDEGIKSIFNLINLTNL 182
Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
+ + +G G++ +S L NL ++++ T I D +++ L +L L
Sbjct: 183 NIQNNDIGDEGVQDISKLINLTNLDICQTKIGDNGAKEICKLINLTKL 230
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 104/233 (44%), Gaps = 26/233 (11%)
Query: 66 GSDVTD-SGLIHLKDCSNLQSLDFNFCIQ-ISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
G+DV D S L++LK N I I + GL + L NLT+L+ NN I +G
Sbjct: 7 GNDVQDISKLVNLKT--------LNISINNIGNEGLIIVCNLINLTNLNIE-NNDIGDEG 57
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC---------------I 168
++ + L+NL L+++ G + L L SLN+ N I
Sbjct: 58 VQDISKLVNLTNLNIKSNALRSKGAQEISKLTNLTSLNVAENNVMLSEKNLSRNNITHQI 117
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
+ +K + L NL +L I + + D G+ + L LT L++ + + S+ L
Sbjct: 118 ENDGIKSIFNLINLTNLNIQNNDIGDEGVQDISKLINLTNLDIGNNKIRDEGIKSIFNLI 177
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
+L LN+ + D+G + SK+ +L L++ +I D + L NL L
Sbjct: 178 NLTNLNIQNNDIGDEGVQDISKLINLTNLDICQTKIGDNGAKEICKLINLTKL 230
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L ++++ +D+ D G+ + NL +LD +I D G++ + L NLT+L+ +NN
Sbjct: 130 NLTNLNIQNNDIGDEGVQDISKLINLTNLDIGNN-KIRDEGIKSIFNLINLTNLNI-QNN 187
Query: 118 AITAQGMKAFAGLINLVKLDL 138
I +G++ + LINL LD+
Sbjct: 188 DIGDEGVQDISKLINLTNLDI 208
>gi|209154948|gb|ACI33706.1| F-box/LRR-repeat protein 14 [Salmo salar]
Length = 400
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 109/338 (32%), Positives = 179/338 (52%), Gaps = 48/338 (14%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ G+ N++SL +S C +TD+G+ A+++ + L +LNL C
Sbjct: 86 IQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCK----------------- 128
Query: 233 LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GI 288
Q++D + ++ + +L+VL LG + IT+ L+ + GL L+SLNL SC +
Sbjct: 129 ------QITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHV 182
Query: 289 GDEGLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-IS 337
D G+ +L G+ NL+ L L D Q + L+H+S GL L +NLSF G IS
Sbjct: 183 SDVGIGHLAGMTRSAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLAKLRVLNLSFCGGIS 242
Query: 338 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-GLTHLDL-FGARITDSGAAYL-R 393
D + L+ ++SL SLNL + I+DTG+ L T L+ LD+ F +I D AY+ +
Sbjct: 243 DAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDMSFCDKIGDQSLAYIAQ 302
Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ LT L ++
Sbjct: 303 GLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLTGID 362
Query: 452 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
+ ++IT GL + L L+ L L ++T ++ R
Sbjct: 363 LYGCTKITKRGLERITQLPCLKVLNLGLWQMTESEKVR 400
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 106/327 (32%), Positives = 170/327 (51%), Gaps = 32/327 (9%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 121
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC-P 215
LN+ C ITDS + ++ L NL+ L++ CS +T++G+ + GL +L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRH 181
Query: 216 VTAACLDSLSALG--------SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 264
V+ + L+ + +L YL L CQ L+D + SK + L+VLNL F I
Sbjct: 182 VSDVGIGHLAGMTRSAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLAKLRVLNLSFCGGI 241
Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS 321
+D ++HL +T+L SLNL SC I D G+++L G L L++S ++G L +++
Sbjct: 242 SDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDMSFCDKIGDQSLAYIA 301
Query: 322 -GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHL 377
GL L+S++L ISD + R + + L++LN+ +ITD GL + LT LT +
Sbjct: 302 QGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLTGI 361
Query: 378 DLFG-ARITDSGAAYLRNFKNLRSLEI 403
DL+G +IT G + L+ L +
Sbjct: 362 DLYGCTKITKRGLERITQLPCLKVLNL 388
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 142/286 (49%), Gaps = 33/286 (11%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L ++L G S++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 130 ITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGH 189
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L G++ A G +NL L L+ C ++ L ++ KGL KL
Sbjct: 190 LAGMTR-----------------SAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLAKLRV 232
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
LN+ +C I+D+ M LS +T+L SL + SC ++D+GI +L G +L+ L++ C
Sbjct: 233 LNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDMSFCDKI 292
Query: 218 AACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVH 271
SL+ + Y L+L C +SDDG + + + L+ LN+G ITD+ L
Sbjct: 293 GD--QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLEL 350
Query: 272 LK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
+ LT L ++L C I GL +T L LK L L Q+ S
Sbjct: 351 IADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTES 396
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 125/245 (51%), Gaps = 32/245 (13%)
Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 322
++G+ N+ESLNL C G+G + + L L C +++D+ +G R
Sbjct: 86 IQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLG----RIAQY 141
Query: 323 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 372
L NLE + L + I++ L +A GL LKSLNL + R ++D G+ L +T
Sbjct: 142 LKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGC 201
Query: 373 -GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNL 427
L +L L ++TD ++ + LR +L CGG ++DAG+ H+ ++SL LNL
Sbjct: 202 LNLEYLTLQDCQKLTDLSLKHISKGLAKLRVLNLSFCGG-ISDAGMIHLSHMTSLWSLNL 260
Query: 428 SQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 484
N++D + L G L L++S +I L ++ + L L+SL+L SC ++ +
Sbjct: 261 RSCDNISDTGIMHLAMGTLRLSGLDMSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDD 320
Query: 485 DIKRL 489
I R+
Sbjct: 321 GINRM 325
>gi|320169700|gb|EFW46599.1| protein tyrosine kinase [Capsaspora owczarzaki ATCC 30864]
Length = 1026
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 102/343 (29%), Positives = 146/343 (42%), Gaps = 5/343 (1%)
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
SL FN I+ GL++LT ++ + NN IT F GL ++ + DL
Sbjct: 69 SLQFN---HITSLATNAFTGLTSLTQVTLQNNN-ITNIVATTFTGLSSVTQTDLSYNKLT 124
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
GL L L++ N IT S LT L L ++ + + + GL
Sbjct: 125 SLSANAFTGLTALAQLDLS-MNQITSIHATAFSDLTALTQLSLTNNIIRTIPSSAFTGLT 183
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
L LNL G TA ++ + L +L YL+L C ++ F+ + +L L L N+I
Sbjct: 184 ALNTLNLGGNLFTAIPANAFTGLSALNYLSLFACLITVISANAFTGLTALTFLTLQSNQI 243
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
+ GLT L+ L L S I T L L L+LS + S +GL+
Sbjct: 244 LNIPANAFAGLTALQFLYLSSAQITSLSANAFTDLSALTQLDLSYNMITSLSANTFTGLS 303
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
L ++LS+ I+ S GLS+L L L QIT A LT LT L LF +I
Sbjct: 304 ALTRLDLSYNMITSLSANTFTGLSALTQLYLFENQITSIPADAFAGLTALTQLFLFENQI 363
Query: 385 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
T A L LE+ +T + L++LT L L
Sbjct: 364 TSIPADAFAGLTALTQLELSHTRITSISANAFRGLTALTALYL 406
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 152/336 (45%), Gaps = 8/336 (2%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
GL L+ L + + N +T + +GLT L L +S +++T + GL LT L+
Sbjct: 11 FAGLTALQYLELSY-NQLTGISAQAFTGLTALNYLDLSNNRITKIPGSLFTGLTMLTTLS 69
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L+ +T+ ++ + L SL + L +++ F+ + S+ +L +N++T
Sbjct: 70 LQFNHITSLATNAFTGLTSLTQVTLQNNNITNIVATTFTGLSSVTQTDLSYNKLTSLSAN 129
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
GLT L L+L I + L L L L++ + + +GLT L ++N
Sbjct: 130 AFTGLTALAQLDLSMNQITSIHATAFSDLTALTQLSLTNNIIRTIPSSAFTGLTALNTLN 189
Query: 331 LS---FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
L FT I + GLS+L L+L A IT A T LT LT L L +I +
Sbjct: 190 LGGNLFTAIPANAF---TGLSALNYLSLFACLITVISANAFTGLTALTFLTLQSNQILNI 246
Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
A L+ L + +T DLS+LT L+LS N +T + +GL+ L
Sbjct: 247 PANAFAGLTALQFLYLSSAQITSLSANAFTDLSALTQLDLSYNM-ITSLSANTFTGLSAL 305
Query: 448 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 483
L++S + ITS L L L L ++T+
Sbjct: 306 TRLDLSYNMITSLSANTFTGLSALTQLYLFENQITS 341
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 111/269 (41%), Gaps = 25/269 (9%)
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
QL F+ + +L+ L L +N++T GLT L L+L + I TG
Sbjct: 2 QLISIPANAFAGLTALQYLELSYNQLTGISAQAFTGLTALNYLDLSNNRITKIPGSLFTG 61
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-----------SFTGIS-----DGSLR 342
L L L L + S +GLT+L + L +FTG+S D S
Sbjct: 62 LTMLTTLSLQFNHITSLATNAFTGLTSLTQVTLQNNNITNIVATTFTGLSSVTQTDLSYN 121
Query: 343 KL--------AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
KL GL++L L+L QIT A + LT LT L L I ++
Sbjct: 122 KLTSLSANAFTGLTALAQLDLSMNQITSIHATAFSDLTALTQLSLTNNIIRTIPSSAFTG 181
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
L +L + G T LS+L L+L C +T + +GLT L L + +
Sbjct: 182 LTALNTLNLGGNLFTAIPANAFTGLSALNYLSLFA-CLITVISANAFTGLTALTFLTLQS 240
Query: 455 SRITSAGLRHLKPLKNLRSLTLESCKVTA 483
++I + L L+ L L S ++T+
Sbjct: 241 NQILNIPANAFAGLTALQFLYLSSAQITS 269
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 83/180 (46%), Gaps = 6/180 (3%)
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
+GLT L+ + LS+ ++ S + GL++L L+L +IT + T LT LT L L
Sbjct: 11 FAGLTALQYLELSYNQLTGISAQAFTGLTALNYLDLSNNRITKIPGSLFTGLTMLTTLSL 70
Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
IT +L + + +T+ LSS+T +LS N LT +
Sbjct: 71 QFNHITSLATNAFTGLTSLTQVTLQNNNITNIVATTFTGLSSVTQTDLSYN-KLTSLSAN 129
Query: 440 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 499
+GLT L L++S ++ITS H +L +LT +T N I+ + S L +
Sbjct: 130 AFTGLTALAQLDLSMNQITSI---HATAFSDLTALT--QLSLTNNIIRTIPSSAFTGLTA 184
>gi|290974952|ref|XP_002670208.1| leucine-rich repeat protein [Naegleria gruberi]
gi|284083764|gb|EFC37464.1| leucine-rich repeat protein [Naegleria gruberi]
Length = 252
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 121/237 (51%), Gaps = 1/237 (0%)
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
Q+ +G + S++ L LN+ NEI D+ + G+ L SLN+ S G+EG +++
Sbjct: 13 QVGVEGAKSISEMKQLTSLNISNNEIGDKGANFISGMKQLTSLNIGSNKFGNEGAKSISE 72
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
+ L L + Q+G G++ +S + L S+++ + GI ++ + L SL++
Sbjct: 73 MKQLTVLYIGLNQIGDEGVKFISEMKRLTSVDICYNGIGVKGANSISEMKQLTSLDICLN 132
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
QI D G +++ L LT L + +I D GA + K L SL I + G + I +
Sbjct: 133 QIGDEGAKSISELEQLTLLYISANQIGDEGAKSISELKQLTSLAISANQIGVKGAESISE 192
Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
L LT L S N + + ++ IS + L SL++ N+RI + G+ L L +L+ L
Sbjct: 193 LKQLTSLAASAN-QIGAEGVKFISEMKQLTSLDIGNNRIGAEGVTLLTSLTSLKFLV 248
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 24/262 (9%)
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+CN + K +S + L SL IS +++ D G ++ G+++LT
Sbjct: 10 YCNQVGVEGAKSISEMKQLTSLNISNNEIGDKGANFISGMKQLT---------------- 53
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
LN+ + ++G + S++ L VL +G N+I DE + + + L S+++
Sbjct: 54 --------SLNIGSNKFGNEGAKSISEMKQLTVLYIGLNQIGDEGVKFISEMKRLTSVDI 105
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
GIG +G +++ + L L++ Q+G G + +S L L + +S I D +
Sbjct: 106 CYNGIGVKGANSISEMKQLTSLDICLNQIGDEGAKSISELEQLTLLYISANQIGDEGAKS 165
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
++ L L SL + A QI G +++ L LT L +I G ++ K L SL+I
Sbjct: 166 ISELKQLTSLAISANQIGVKGAESISELKQLTSLAASANQIGAEGVKFISEMKQLTSLDI 225
Query: 404 CGGGLTDAGVKHIKDLSSLTLL 425
+ GV + L+SL L
Sbjct: 226 GNNRIGAEGVTLLTSLTSLKFL 247
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 100/213 (46%), Gaps = 2/213 (0%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I D G + G+ LTSL+ +N +G K+ + + L L + G+ +
Sbjct: 37 EIGDKGANFISGMKQLTSLNIG-SNKFGNEGAKSISEMKQLTVLYIGLNQIGDEGVKFIS 95
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+ +L S++I + N I +S + L SL I +++ D G + L++LTLL +
Sbjct: 96 EMKRLTSVDICY-NGIGVKGANSISEMKQLTSLDICLNQIGDEGAKSISELEQLTLLYIS 154
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+ S+S L L L ++ Q+ G E S++ L L N+I E + +
Sbjct: 155 ANQIGDEGAKSISELKQLTSLAISANQIGVKGAESISELKQLTSLAASANQIGAEGVKFI 214
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
+ L SL++ + IG EG+ LT L +LK L
Sbjct: 215 SEMKQLTSLDIGNNRIGAEGVTLLTSLTSLKFL 247
>gi|254416357|ref|ZP_05030110.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
gi|196176795|gb|EDX71806.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
Length = 438
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 110/339 (32%), Positives = 164/339 (48%), Gaps = 48/339 (14%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+ L G SNLT L + +N+IT + AGL NL L LE + ++ L +L
Sbjct: 66 ISPLAGFSNLTKL-YLESNSIT--DISPLAGLSNLTVLSLE-----SNSITDVSPLAELS 117
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+L + N + +D+ PL+GL+NL L ++ + +TD I L GL LT+L L+ +T
Sbjct: 118 NLTKLYLNNNSITDVSPLAGLSNLTKLYLNNNSITD--IGPLAGLSNLTVLYLDSNSITD 175
Query: 219 ACLDSLSALGSLFYLNLNRCQLSD--------------------DGCEKFSKIGSLKVLN 258
+ L+ L +L LNL ++D +++ +L VL
Sbjct: 176 --VSPLAGLSNLTVLNLGNNSITDVNPLAELSNLTKVFLTNNSITNISPLAELSNLTVLY 233
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ---VGSS 315
L N ITD + L GL+NL LNLD+ I D + L GL NL L L + +G +
Sbjct: 234 LYSNSITD--ISPLAGLSNLTVLNLDNNSITD--ISPLAGLSNLTELSLGNADFFIIGEN 289
Query: 316 GLRHLS---GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
+ +S GL+NL +NL I+D + LA LS+L L+L + ITD ++ L L+
Sbjct: 290 SITDISPLAGLSNLTVLNLGRNSITD--VSPLAELSNLTKLSLGSNSITD--ISPLAGLS 345
Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
LT L L ITD + L NL L + +TDA
Sbjct: 346 NLTKLYLDSNSITD--VSPLAGLSNLTELFLSSNSITDA 382
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 119/343 (34%), Positives = 168/343 (48%), Gaps = 45/343 (13%)
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
W N ITD + PL+G +NL L + + +TD I+ L GL LT+L+LE +T +
Sbjct: 59 WDNSITD--ISPLAGFSNLTKLYLESNSITD--ISPLAGLSNLTVLSLESNSITD--VSP 112
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L+ L +L L LN ++D + + +L L L N ITD + L GL+NL L L
Sbjct: 113 LAELSNLTKLYLNNNSITD--VSPLAGLSNLTKLYLNNNSITD--IGPLAGLSNLTVLYL 168
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISD---- 338
DS I D + L GL NL L L + + + L LS LT + N S T IS
Sbjct: 169 DSNSITD--VSPLAGLSNLTVLNLGNNSITDVNPLAELSNLTKVFLTNNSITNISPLAEL 226
Query: 339 -------------GSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLT--HLDLF-- 380
+ LAGLS+L LNLD ITD + LA L++LT L+ + D F
Sbjct: 227 SNLTVLYLYSNSITDISPLAGLSNLTVLNLDNNSITDISPLAGLSNLTELSLGNADFFII 286
Query: 381 -GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
ITD + L NL L + +TD V + +LS+LT L+L N +TD +
Sbjct: 287 GENSITD--ISPLAGLSNLTVLNLGRNSITD--VSPLAELSNLTKLSLGSNS-ITD--IS 339
Query: 440 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
++GL+ L L + ++ IT + L L NL L L S +T
Sbjct: 340 PLAGLSNLTKLYLDSNSIT--DVSPLAGLSNLTELFLSSNSIT 380
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 98/291 (33%), Positives = 143/291 (49%), Gaps = 34/291 (11%)
Query: 45 NDKWMDVIASQG-SSLLSVDLSGSDVTDSGLIHLKDCSNLQ--SLDFNFCIQISDGGLEH 101
N+ DV G S+L + L+ + +TD G L SNL LD N +S
Sbjct: 126 NNSITDVSPLAGLSNLTKLYLNNNSITDIG--PLAGLSNLTVLYLDSNSITDVS-----P 178
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L GLSNLT L+ NN+IT + A L NL K+ L + + N+ L +L +L
Sbjct: 179 LAGLSNLTVLNLG-NNSIT--DVNPLAELSNLTKVFLT-----NNSITNISPLAELSNLT 230
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV----- 216
+ + + +D+ PL+GL+NL L + + +TD I+ L GL LT L+L
Sbjct: 231 VLYLYSNSITDISPLAGLSNLTVLNLDNNSITD--ISPLAGLSNLTELSLGNADFFIIGE 288
Query: 217 -TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+ + L+ L +L LNL R ++D +++ +L L+LG N ITD + L GL
Sbjct: 289 NSITDISPLAGLSNLTVLNLGRNSITD--VSPLAELSNLTKLSLGSNSITD--ISPLAGL 344
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
+NL L LDS I D + L GL NL L LS + + L+ LTNL
Sbjct: 345 SNLTKLYLDSNSITD--VSPLAGLSNLTELFLSSNSITDA--SPLAQLTNL 391
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 110/323 (34%), Positives = 156/323 (48%), Gaps = 49/323 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S+L + L + +TD + L + SNL L N I+D + L GLSNLT L + N
Sbjct: 95 SNLTVLSLESNSITD--VSPLAELSNLTKLYLNNN-SITD--VSPLAGLSNLTKL-YLNN 148
Query: 117 NAITAQGMKAFAGLINL--VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD---- 170
N+IT G AGL NL + LD T + L GL L LN+ N ITD
Sbjct: 149 NSITDIG--PLAGLSNLTVLYLDSNSITDVSP----LAGLSNLTVLNLG-NNSITDVNPL 201
Query: 171 ----------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
+++ PL+ L+NL L + + +TD I+ L GL LT+LNL+
Sbjct: 202 AELSNLTKVFLTNNSITNISPLAELSNLTVLYLYSNSITD--ISPLAGLSNLTVLNLDNN 259
Query: 215 PVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG---SLKVLNLGFNEITDECLV 270
+T + L LS L L N + + ++ S + +L VLNLG N ITD +
Sbjct: 260 SITDISPLAGLSNLTELSLGNADFFIIGENSITDISPLAGLSNLTVLNLGRNSITD--VS 317
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
L L+NL L+L S I D + L GL NL L L + + + L+GL+NL +
Sbjct: 318 PLAELSNLTKLSLGSNSITD--ISPLAGLSNLTKLYLDSNSI--TDVSPLAGLSNLTELF 373
Query: 331 LSFTGISDGSLRKLAGLSSLKSL 353
LS I+D S LA L++L+ L
Sbjct: 374 LSSNSITDAS--PLAQLTNLRRL 394
>gi|116621127|ref|YP_823283.1| hypothetical protein Acid_2008 [Candidatus Solibacter usitatus
Ellin6076]
gi|116224289|gb|ABJ82998.1| hypothetical protein Acid_2008 [Candidatus Solibacter usitatus
Ellin6076]
Length = 248
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 122/250 (48%), Gaps = 17/250 (6%)
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
Q+ D K L+ L + IT++ L + +T L + L + D LV+L
Sbjct: 13 QVDDALWRKLESRRDLEELVIWGGAITNDRLEPVSRMTWLTGVGLGEVPVDDGVLVHLQP 72
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKLAGLSSLKSLNL 355
L L+CL L+ T V R L T L + L TG D R LA +L+ + +
Sbjct: 73 LRELECLNLAYTGVTGDFTRLLG--TPLRDVRLEGCRRTG--DACARSLARFPTLRQVEM 128
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
+TD GLAA+ +L + G RITD G + F NLR L+IC +TD GV+
Sbjct: 129 HMTGLTDDGLAAMAALP--LEVLWLGPRITDRGMETIGGFANLRHLDICTHLITDEGVRA 186
Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
+ L L +L L+++ ++D ++E++S TGL LNV+ + IT+ GL LK L
Sbjct: 187 LAGLQQLQVLWLTRS-RVSDASIEVLSQFTGLRELNVNYTEITAQGLARLK-------LA 238
Query: 476 LESCKVTAND 485
L C++ D
Sbjct: 239 LPECRLVEPD 248
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 111/214 (51%), Gaps = 8/214 (3%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
LE L I W IT+ ++P+S +T L + + V D + +L+ L++L LNL V
Sbjct: 28 LEELVI-WGGAITNDRLEPVSRMTWLTGVGLGEVPVDDGVLVHLQPLRELECLNLAYTGV 86
Query: 217 TAACLDSLSALGS-LFYLNLNRCQLSDDGCEK-FSKIGSLKVLNLGFNEITDECLVHLKG 274
T D LG+ L + L C+ + D C + ++ +L+ + + +TD+ L +
Sbjct: 87 TG---DFTRLLGTPLRDVRLEGCRRTGDACARSLARFPTLRQVEMHMTGLTDDGLAAMAA 143
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
L LE L L I D G+ + G NL+ L++ + G+R L+GL L+ + L+ +
Sbjct: 144 LP-LEVLWLGP-RITDRGMETIGGFANLRHLDICTHLITDEGVRALAGLQQLQVLWLTRS 201
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
+SD S+ L+ + L+ LN++ +IT GLA L
Sbjct: 202 RVSDASIEVLSQFTGLRELNVNYTEITAQGLARL 235
Score = 41.6 bits (96), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
IT +GM+ G NL LD+ CT + G+ L GL +L+ L + + ++D+ ++ L
Sbjct: 155 ITDRGMETIGGFANLRHLDI--CTHLITDEGVRALAGLQQLQVLWLT-RSRVSDASIEVL 211
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLK 201
S T L+ L ++ +++T G+A LK
Sbjct: 212 SQFTGLRELNVNYTEITAQGLARLK 236
>gi|62632752|ref|NP_001015043.1| F-box and leucine-rich repeat protein 14b [Danio rerio]
gi|190338219|gb|AAI63001.1| F-box and leucine-rich repeat protein 14b [Danio rerio]
gi|190338703|gb|AAI63002.1| F-box and leucine-rich repeat protein 14b [Danio rerio]
Length = 400
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 109/338 (32%), Positives = 181/338 (53%), Gaps = 48/338 (14%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ G+ N++SL +S C +TD+G+ A+++ + L +LNL C
Sbjct: 86 IQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCK----------------- 128
Query: 233 LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GI 288
Q++D + ++ + +L+VL LG + IT+ L+ + GL L+SLNL SC +
Sbjct: 129 ------QITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHV 182
Query: 289 GDEGLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-IS 337
D G+ +L G+ +L+ L L D Q + L+H+S GLT L+ +NLSF G IS
Sbjct: 183 SDVGIGHLAGMTRSAAEGCLSLEYLTLQDCQKLTDLSLKHISKGLTKLKVLNLSFCGGIS 242
Query: 338 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-GLTHLDL-FGARITDSGAAYL-R 393
D + L+ ++SL SLNL + I+DTG+ L T L+ LD+ F +I D AY+ +
Sbjct: 243 DAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDVSFCDKIGDQSLAYIAQ 302
Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ LT L ++
Sbjct: 303 GLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLTGID 362
Query: 452 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
+ ++IT GL + L L+ L L ++T ++ R
Sbjct: 363 LYGCTKITKRGLERITQLPCLKVLNLGLWQMTESEKVR 400
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 108/327 (33%), Positives = 170/327 (51%), Gaps = 32/327 (9%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 121
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC-P 215
LN+ C ITDS + ++ L NL+ L++ CS +T++G+ + GL +L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRH 181
Query: 216 VTAACLDSLSALG--------SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 264
V+ + L+ + SL YL L CQ L+D + SK + LKVLNL F I
Sbjct: 182 VSDVGIGHLAGMTRSAAEGCLSLEYLTLQDCQKLTDLSLKHISKGLTKLKVLNLSFCGGI 241
Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS 321
+D ++HL +T+L SLNL SC I D G+++L G L L++S ++G L +++
Sbjct: 242 SDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDVSFCDKIGDQSLAYIA 301
Query: 322 -GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHL 377
GL L+S++L ISD + R + + L++LN+ +ITD GL + LT LT +
Sbjct: 302 QGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLTGI 361
Query: 378 DLFG-ARITDSGAAYLRNFKNLRSLEI 403
DL+G +IT G + L+ L +
Sbjct: 362 DLYGCTKITKRGLERITQLPCLKVLNL 388
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 143/286 (50%), Gaps = 33/286 (11%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L ++L G S++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 130 ITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGH 189
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L G++ A G ++L L L+ C ++ L ++ KGL KL+
Sbjct: 190 LAGMTR-----------------SAAEGCLSLEYLTLQDCQKLTDLSLKHISKGLTKLKV 232
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
LN+ +C I+D+ M LS +T+L SL + SC ++D+GI +L G +L+ L++ C
Sbjct: 233 LNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDVSFCDKI 292
Query: 218 AACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVH 271
SL+ + Y L+L C +SDDG + + + L+ LN+G ITD+ L
Sbjct: 293 GD--QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLEL 350
Query: 272 LK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
+ LT L ++L C I GL +T L LK L L Q+ S
Sbjct: 351 IADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTES 396
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 125/245 (51%), Gaps = 32/245 (13%)
Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 322
++G+ N+ESLNL C G+G + + L L C +++D+ +G R
Sbjct: 86 IQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLG----RIAQY 141
Query: 323 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 372
L NLE + L + I++ L +A GL LKSLNL + R ++D G+ L +T
Sbjct: 142 LKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGC 201
Query: 373 -GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNL 427
L +L L ++TD ++ + L+ +L CGG ++DAG+ H+ ++SL LNL
Sbjct: 202 LSLEYLTLQDCQKLTDLSLKHISKGLTKLKVLNLSFCGG-ISDAGMIHLSHMTSLWSLNL 260
Query: 428 SQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 484
N++D + L G L L+VS +I L ++ + L L+SL+L SC ++ +
Sbjct: 261 RSCDNISDTGIMHLAMGTLRLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDD 320
Query: 485 DIKRL 489
I R+
Sbjct: 321 GINRM 325
>gi|83592173|ref|YP_425925.1| hypothetical protein Rru_A0837 [Rhodospirillum rubrum ATCC 11170]
gi|386348881|ref|YP_006047129.1| hypothetical protein F11_04310 [Rhodospirillum rubrum F11]
gi|83575087|gb|ABC21638.1| Leucine-rich repeat [Rhodospirillum rubrum ATCC 11170]
gi|346717317|gb|AEO47332.1| leucine-rich repeat-containing protein [Rhodospirillum rubrum F11]
Length = 1085
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 106/315 (33%), Positives = 166/315 (52%), Gaps = 26/315 (8%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+D+ PL+GL NL+ L +S + VTD + L G++ L L L VT L L+ L +L
Sbjct: 85 TDLTPLTGLENLQGLFLSYTAVTD--LTPLTGIKSLQSLILSETQVTD--LTPLAGLKNL 140
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
+NL+ Q++D + + +L+ L L + +TD L L GL NL+ L L + D
Sbjct: 141 QSINLSATQITD--LAPLAGLENLQNLTLSYTTVTD--LAPLAGLENLQHLILLGTRVID 196
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSS 349
L L GL +L+ L+LS T+V + + L GL +L+S++L T ++D L L L S
Sbjct: 197 --LTPLAGLKSLQSLDLSGTRV--TNIAPLVGLKSLQSLDLRRTRVTDIAPLVGLKSLKS 252
Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409
L+SLNL +TD LA L L L +L L +TD A L +NL+++++ G
Sbjct: 253 LQSLNLSRTPVTD--LAPLAGLENLQNLTLSYTTVTD--LAPLAGLENLQNIDLGG---- 304
Query: 410 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL-NVSNSRITSAGLRHLKPL 468
+ DL+ L L QN +L + ++ L GL +L N++ S T L L L
Sbjct: 305 ----TEVIDLAPLAGLENLQNIDLGGTEVIDLAPLAGLENLQNLTLSYTTVTDLAPLAGL 360
Query: 469 KNLRSLTLESCKVTA 483
+NL+S+ C++T+
Sbjct: 361 ENLQSIDCSGCRITS 375
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 110/339 (32%), Positives = 177/339 (52%), Gaps = 35/339 (10%)
Query: 98 GLEHL----RGLSNLTSLSF-----RRNNAITAQ---GMKAFAGLINLVKLDLERCTRIH 145
GLE + R L+ LT+L R + I+A+ + GL NL L L
Sbjct: 49 GLERIPDSIRELAELTALRLTCWDRARGSFISARLVTDLTPLTGLENLQGLFLSYTAVTD 108
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
L L G+ L+SL + +D+ PL+GL NL+S+ +S +++TD +A L GL+
Sbjct: 109 --LTPLTGIKSLQSLILSETQV---TDLTPLAGLKNLQSINLSATQITD--LAPLAGLEN 161
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L L VT L L+ L +L +L L ++ D + + SL+ L+L +T
Sbjct: 162 LQNLTLSYTTVTD--LAPLAGLENLQHLILLGTRVID--LTPLAGLKSLQSLDLSGTRVT 217
Query: 266 DECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
+ + L GL +L+SL+L + D LV L L +L+ L LS T V + L L+GL
Sbjct: 218 N--IAPLVGLKSLQSLDLRRTRVTDIAPLVGLKSLKSLQSLNLSRTPV--TDLAPLAGLE 273
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
NL+++ LS+T ++D L LAGL +L++++L ++ D LA L L L ++DL G +
Sbjct: 274 NLQNLTLSYTTVTD--LAPLAGLENLQNIDLGGTEVID--LAPLAGLENLQNIDLGGTEV 329
Query: 385 TDSGAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSL 422
D A L +NL++L + +TD A + +++L S+
Sbjct: 330 ID--LAPLAGLENLQNLTLSYTTVTDLAPLAGLENLQSI 366
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 114/225 (50%), Gaps = 28/225 (12%)
Query: 58 SLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
SL S+DL + VTD + L+ LK +LQSL+ + ++D L L GL NL +L+
Sbjct: 227 SLQSLDLRRTRVTDIAPLVGLKSLKSLQSLNLSRT-PVTD--LAPLAGLENLQNLTL--- 280
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ T + AGL NL +DL I L L GL L+++++ I D+ PL
Sbjct: 281 SYTTVTDLAPLAGLENLQNIDLGGTEVID--LAPLAGLENLQNIDLGGTEVI---DLAPL 335
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+GL NL++L +S + VTD +A L GL+ L ++ GC +T+ D L +L ++ +
Sbjct: 336 AGLENLQNLTLSYTTVTD--LAPLAGLENLQSIDCSGCRITSVP-DGLFDSPALRWVICS 392
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG-LTNLES 280
L+D E S+ G+ D CL H++ L +LE
Sbjct: 393 EGALADIPAEALSQGGA------------DNCLPHIRAHLRDLEQ 425
>gi|84043372|ref|XP_951476.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|33348176|gb|AAQ15503.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|62359981|gb|AAX80405.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei]
Length = 1393
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 114/406 (28%), Positives = 181/406 (44%), Gaps = 58/406 (14%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD-MKPLSGLTNL 182
++A A ++ L KL L CT I G+ L L +L+ L++ N TD++ ++ L +
Sbjct: 477 VEALANILTLEKLSLHGCTDIDAGIGCLGNLPQLKVLDLSGTN--TDNESLRSLCLSQTM 534
Query: 183 KSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
SL +S C K+T+ ++++ L+ L LNL C A ++L L L L+ ++
Sbjct: 535 VSLNLSHCWKMTN--VSHISSLEALNELNLSNCIRINAGWEALEKLQQLHVAILSNTHIT 592
Query: 242 DDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV---NLT 297
D G FSK +L L+L F N++ D + L +T LE LNLDSC +GL L
Sbjct: 593 DRGISYFSKCKNLVTLDLSFCNKLLD--VTTLSNITTLEELNLDSCSNIRKGLSVLGELP 650
Query: 298 GLC--NLKCLELSDTQVGSSG------------------LRHLSGLTNLESINLSFTGIS 337
LC N+K ++L D+ +GS G + LS L LE +NL +
Sbjct: 651 RLCVLNIKGVQLEDSVIGSLGNGKSLVRLSLENCKGFGDVTPLSNLVTLEELNLHYCDKV 710
Query: 338 DGSLRKLAGLSSLKSLNLDARQITD------------------------TGLAALTSLTG 373
+ L L L+ L+L Q+ D T ++A+ SLT
Sbjct: 711 TSGMGTLGRLPQLRVLDLGRTQVDDNSLENICTSSIPLVSLNFSHCKKITSISAIASLTA 770
Query: 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
L L++ SG LR + + D ++H+ + SL LNL+ ++
Sbjct: 771 LEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRINDEKIRHVSECKSLNTLNLAFCKDI 830
Query: 434 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 479
TD T +S +T L LN+ G+ L L R L+++ C
Sbjct: 831 TDVT--ALSKITMLEELNLDCCPNIRKGIETLGTLPKARILSMKEC 874
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 140/522 (26%), Positives = 219/522 (41%), Gaps = 88/522 (16%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L +N W + Q L LS + +TD G+ + C NL +LD +FC
Sbjct: 556 ALNELNLSNCIRINAGWEALEKLQ--QLHVAILSNTHITDRGISYFSKCKNLVTLDLSFC 613
Query: 92 IQISD-------GGLEHL---------RGLSNLTSLSFRRNNAITAQGMKAFAGLI---- 131
++ D LE L +GLS L L R + +G++ +I
Sbjct: 614 NKLLDVTTLSNITTLEELNLDSCSNIRKGLSVLGELP--RLCVLNIKGVQLEDSVIGSLG 671
Query: 132 ---NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
+LV+L LE C + G + L L+ LE LN+ +C+ +T S M L L L+ L +
Sbjct: 672 NGKSLVRLSLENC-KGFGDVTPLSNLVTLEELNLHYCDKVT-SGMGTLGRLPQLRVLDLG 729
Query: 189 CSKVTD------------------------SGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
++V D + I+ + L L LN++ C + +
Sbjct: 730 RTQVDDNSLENICTSSIPLVSLNFSHCKKITSISAIASLTALEELNIDNCCNVTSGWNVF 789
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNL 283
L L L+ +++D+ S+ SL LNL F +ITD + L +T LE LNL
Sbjct: 790 GTLHQLRVATLSNTRINDEKIRHVSECKSLNTLNLAFCKDITD--VTALSKITMLEELNL 847
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG--SL 341
D C +G+ L L + L + + +G + S L N +S+ S G S+
Sbjct: 848 DCCPNIRKGIETLGTLPKARILSMKECYMGDGYAQQCSILGNSKSLVKLNLERSRGRISV 907
Query: 342 RKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
+ L+ +++L+ L LD AR++ + S + L L + + TD
Sbjct: 908 KALSDIATLEELVLDHAREV-----CCIPSFSCLPRLRVLNLKYTD-------------- 948
Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
+ K+I + SL LNLS +TD + ++S L+ L LNV+
Sbjct: 949 -------INGDATKNISESKSLRSLNLSHCKWVTD--ISVLSSLSTLEELNVNCCNAIRK 999
Query: 461 GLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNLVSFR 501
G L L LR L +TA DI L S + L L FR
Sbjct: 1000 GWESLGKLPLLRVAILSDTNITAKDIACLSSCKKLVKLKFFR 1041
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 118/433 (27%), Positives = 194/433 (44%), Gaps = 44/433 (10%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++L +D+ ++ + +L+SL+ + C ++D +S L+SLS
Sbjct: 942 LNLKYTDINGDATKNISESKSLRSLNLSHCKWVTD--------ISVLSSLS--------- 984
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
L +L++ C I G +L G + L + I IT D+ LS
Sbjct: 985 ----------TLEELNVNCCNAIRKGWESL-GKLPLLRVAILSDTNITAKDIACLSSCKK 1033
Query: 182 LKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
L L+ C K++D + Y +Q L L ++ C L++L L L +L+L
Sbjct: 1034 LVKLKFFRCKKLSDVTVVY--KIQSLEELIVKNCSGGLKGLNALGTLPRLRFLHLRNVSG 1091
Query: 241 SDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
SD E SL LN+ E+TD L +T+LE L+L CG EG+ L L
Sbjct: 1092 SDISVESIGTSKSLVRLNIETREELTDT--TPLSNITSLEELSLRKCGNNLEGVGTLGKL 1149
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDAR 358
L+ L L +++ S L ++ ++ S+NL+ + ++D + ++ L++L+ LNL
Sbjct: 1150 PRLRSLYLGLSRINDSTLYYICLSRSITSLNLASSWKLTD--ISHISKLTALEELNLRGC 1207
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDS-GAAYLRNFKNLRSLEICGGGLTDAG-VKHI 416
+G AL+ L L L+L R+T G Y+R K+L +L + +TDA + +I
Sbjct: 1208 YPITSGWEALSELPRLRVLNLESTRVTTRYGGYYIRRCKSLVTLSLESCDMTDASCLANI 1267
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
K L L + C + L L LN+ S IT LR ++P + L L
Sbjct: 1268 KTLEELHI----GRCKELRWGFSPLFTLPRLRILNLICSLITDEDLREIQPPHTIEELNL 1323
Query: 477 ESCKVTANDIKRL 489
C+ NDI L
Sbjct: 1324 SYCE-ELNDITPL 1335
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 139/521 (26%), Positives = 224/521 (42%), Gaps = 71/521 (13%)
Query: 17 SRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIH 76
+ C+ V+L D A D G Y G I ++ L++ LS G ++
Sbjct: 96 TECIHRVTLYNAADNAFSDE--GLYEGALSSLCGRIQAKK---LTITLS-----KGGKLN 145
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL---TSLSFRRNN---------------- 117
LK S L+ L+ I+ G L ++ L+NL L R NN
Sbjct: 146 LKRVSKLKQLE-ELRIEYPRGKLVNIISLNNLDMLKRLCLRSNNVDNNDVCHLFSVGTLE 204
Query: 118 --AIT----AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
AIT ++ + L NL+ L+L + + KL L++ CN ITD+
Sbjct: 205 ELAITDTMQLTNIRGISRLTNLMCLELNSTDIDDTCIGEISACAKLSKLSVSECNNITDA 264
Query: 172 DMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
P+S L L+ L + SC +T GI L L +L +L+L G PV CL L GSL
Sbjct: 265 --TPISQLAALEELNLNSCYHIT-KGIGTLGMLLRLRMLDLSGVPVEDNCLKDLCDCGSL 321
Query: 231 FYLNLNRC-QLSD---------------DGCEKFSK-------IGSLKVLNLGFNEITDE 267
LN++ C QL+D +GC + ++ + L+V ++ +++
Sbjct: 322 ERLNISYCIQLTDINPLSNATAIEELNLNGCRRITRGIDVVWALPKLRVFHMKDVHLSEP 381
Query: 268 CLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
L + +L ++LD+C G GD L L+ + L+ L + SG+ L L L
Sbjct: 382 SLDSVGTGGSLVKVSLDNCAGFGDMSL--LSSIVTLEELNIQKCADIISGVGCLGTLPYL 439
Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARIT 385
+N+ IS + SL LN+++ IT + + AL ++ L L L G
Sbjct: 440 RVLNIKEVHISSLDFTGIGASKSLLQLNMES--ITGLSNVEALANILTLEKLSLHGCTDI 497
Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 445
D+G L N L+ L++ G + ++ + ++ LNLS +T+ + IS L
Sbjct: 498 DAGIGCLGNLPQLKVLDLSGTNTDNESLRSLCLSQTMVSLNLSHCWKMTN--VSHISSLE 555
Query: 446 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 486
L LN+SN +AG L+ L+ L L + +T I
Sbjct: 556 ALNELNLSNCIRINAGWEALEKLQQLHVAILSNTHITDRGI 596
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 117/460 (25%), Positives = 193/460 (41%), Gaps = 46/460 (10%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLS-NLTSLSFRRN 116
+L ++L D SG+ L L+ LD Q+ D LE++ S L SL+F
Sbjct: 698 TLEELNLHYCDKVTSGMGTLGRLPQLRVLDLGR-TQVDDNSLENICTSSIPLVSLNFSHC 756
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
IT+ + A A L L +L+++ C + G L +L + I D ++ +
Sbjct: 757 KKITS--ISAIASLTALEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTR-INDEKIRHV 813
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
S +L +L ++ C +TD + L + L LNL+ CP +++L L L++
Sbjct: 814 SECKSLNTLNLAFCKDITD--VTALSKITMLEELNLDCCPNIRKGIETLGTLPKARILSM 871
Query: 236 NRCQLSDDGCEKFSKIG---SLKVLNLGFNE-----------------ITDE-----CLV 270
C + D ++ S +G SL LNL + + D C+
Sbjct: 872 KECYMGDGYAQQCSILGNSKSLVKLNLERSRGRISVKALSDIATLEELVLDHAREVCCIP 931
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
L L LNL I + N++ +L+ L LS + + + LS L+ LE +N
Sbjct: 932 SFSCLPRLRVLNLKYTDINGDATKNISESKSLRSLNLSHCK-WVTDISVLSSLSTLEELN 990
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG-ARITDSGA 389
++ L L L+ L IT +A L+S L L F +++D
Sbjct: 991 VNCCNAIRKGWESLGKLPLLRVAILSDTNITAKDIACLSSCKKLVKLKFFRCKKLSDVTV 1050
Query: 390 AYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
Y ++L L + C GGL G+ + L L L+L +N + +D ++E I L
Sbjct: 1051 VY--KIQSLEELIVKNCSGGL--KGLNALGTLPRLRFLHL-RNVSGSDISVESIGTSKSL 1105
Query: 448 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 487
V LN+ T L PL N+ SL S + N+++
Sbjct: 1106 VRLNIE----TREELTDTTPLSNITSLEELSLRKCGNNLE 1141
>gi|290974572|ref|XP_002670019.1| leucine-rich repeat protein [Naegleria gruberi]
gi|284083573|gb|EFC37275.1| leucine-rich repeat protein [Naegleria gruberi]
Length = 334
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 109/200 (54%), Gaps = 1/200 (0%)
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
+ L SL + GIGDEG+ ++ L L L +S+ ++G G++ +S L L S+++S
Sbjct: 134 MKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSLDISLN 193
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
I ++ ++ + L SLN++ +I D G+ ++ L LT L++ I D G +
Sbjct: 194 DIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGVKLISE 253
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
K L SL I G+ D GVK I +L LT LN+S N + + + IS + L SL+++
Sbjct: 254 MKQLTSLNISNNGIGDEGVKSISELKQLTSLNISNN-RIGAEGAKSISEMKQLTSLSINY 312
Query: 455 SRITSAGLRHLKPLKNLRSL 474
++I G++ + +K L SL
Sbjct: 313 NQIGDEGVKSISDMKQLTSL 332
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 110/207 (53%), Gaps = 3/207 (1%)
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
++ + L L +SD +G G++ +S L L S+N+S I D ++ ++ L L SL++
Sbjct: 131 ISEMKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSLDI 190
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
I G+ +++ + LT L++ RI D G + K L SL I G+ D GVK
Sbjct: 191 SLNDIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGVKL 250
Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
I ++ LT LN+S N + D+ ++ IS L L SLN+SN+RI + G + + +K L SL+
Sbjct: 251 ISEMKQLTSLNISNNG-IGDEGVKSISELKQLTSLNISNNRIGAEGAKSISEMKQLTSLS 309
Query: 476 LESCKVTANDIKRLQSRDLPNLVSFRP 502
+ ++ +K + D+ L S
Sbjct: 310 INYNQIGDEGVKSIS--DMKQLTSLNK 334
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 109/189 (57%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N I D +K +S L L SL +S +++ D G+ + L++LT L++ + A + S+S
Sbjct: 145 NGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSLDISLNDIGAEGVKSIS 204
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
+ L LN+N ++ D+G + S++ L LN+ N I DE + + + L SLN+ +
Sbjct: 205 EMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGVKLISEMKQLTSLNISN 264
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
GIGDEG+ +++ L L L +S+ ++G+ G + +S + L S+++++ I D ++ ++
Sbjct: 265 NGIGDEGVKSISELKQLTSLNISNNRIGAEGAKSISEMKQLTSLSINYNQIGDEGVKSIS 324
Query: 346 GLSSLKSLN 354
+ L SLN
Sbjct: 325 DMKQLTSLN 333
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 100/187 (53%)
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
+ D+G + S++ L LN+ N I DE + + L L SL++ IG EG+ +++ +
Sbjct: 147 IGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSLDISLNDIGAEGVKSISEM 206
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
L L ++ ++G G++ +S L L S+N+S GI D ++ ++ + L SLN+
Sbjct: 207 KQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGVKLISEMKQLTSLNISNNG 266
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
I D G+ +++ L LT L++ RI GA + K L SL I + D GVK I D+
Sbjct: 267 IGDEGVKSISELKQLTSLNISNNRIGAEGAKSISEMKQLTSLSINYNQIGDEGVKSISDM 326
Query: 420 SSLTLLN 426
LT LN
Sbjct: 327 KQLTSLN 333
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 111/205 (54%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL IS + + D G+ + L++LT LN+ + + +S L L L
Sbjct: 129 KFISEMKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSL 188
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+++ + +G + S++ L LN+ +N I DE + + L L SLN+ + GIGDEG+
Sbjct: 189 DISLNDIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGV 248
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
++ + L L +S+ +G G++ +S L L S+N+S I + ++ + L SL
Sbjct: 249 KLISEMKQLTSLNISNNGIGDEGVKSISELKQLTSLNISNNRIGAEGAKSISEMKQLTSL 308
Query: 354 NLDARQITDTGLAALTSLTGLTHLD 378
+++ QI D G+ +++ + LT L+
Sbjct: 309 SINYNQIGDEGVKSISDMKQLTSLN 333
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 109/206 (52%), Gaps = 2/206 (0%)
Query: 247 KF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
KF S++ L L + N I DE + + L L SLN+ + IGDEG+ ++ L L L
Sbjct: 129 KFISEMKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSL 188
Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
++S +G+ G++ +S + L S+N+++ I D ++ ++ L L SLN+ I D G+
Sbjct: 189 DISLNDIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGV 248
Query: 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
++ + LT L++ I D G + K L SL I + G K I ++ LT L
Sbjct: 249 KLISEMKQLTSLNISNNGIGDEGVKSISELKQLTSLNISNNRIGAEGAKSISEMKQLTSL 308
Query: 426 NLSQNCNLTDKTLELISGLTGLVSLN 451
+++ N + D+ ++ IS + L SLN
Sbjct: 309 SINYN-QIGDEGVKSISDMKQLTSLN 333
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 107/203 (52%)
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
++ +++LT L + + + +S L L LN++ ++ D+G + S++ L L+
Sbjct: 130 FISEMKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSLD 189
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
+ N+I E + + + L SLN++ IGDEG+ ++ L L L +S+ +G G++
Sbjct: 190 ISLNDIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGVK 249
Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
+S + L S+N+S GI D ++ ++ L L SLN+ +I G +++ + LT L
Sbjct: 250 LISEMKQLTSLNISNNGIGDEGVKSISELKQLTSLNISNNRIGAEGAKSISEMKQLTSLS 309
Query: 379 LFGARITDSGAAYLRNFKNLRSL 401
+ +I D G + + K L SL
Sbjct: 310 INYNQIGDEGVKSISDMKQLTSL 332
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 92/172 (53%), Gaps = 1/172 (0%)
Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
+ +S + L S+ +S GI D ++ ++ L L SLN+ +I D G+ ++ L LT L
Sbjct: 129 KFISEMKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSL 188
Query: 378 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
D+ I G + K L SL I + D GVK I +L LT LN+S N + D+
Sbjct: 189 DISLNDIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNG-IGDEG 247
Query: 438 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
++LIS + L SLN+SN+ I G++ + LK L SL + + ++ A K +
Sbjct: 248 VKLISEMKQLTSLNISNNGIGDEGVKSISELKQLTSLNISNNRIGAEGAKSI 299
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 28/216 (12%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G+ D+ + +I S+ L S+++S + + D G+ + + L SLD +
Sbjct: 146 GIGDEGVKLI-SELKQLTSLNMSNNRIGDEGVKLISELKQLTSLDISL------------ 192
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
N I A+G+K+ + + L L++ G+ + L +L SLNI
Sbjct: 193 --------------NDIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNI 238
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
N I D +K +S + L SL IS + + D G+ + L++LT LN+ + A
Sbjct: 239 S-NNGIGDEGVKLISEMKQLTSLNISNNGIGDEGVKSISELKQLTSLNISNNRIGAEGAK 297
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
S+S + L L++N Q+ D+G + S + L LN
Sbjct: 298 SISEMKQLTSLSINYNQIGDEGVKSISDMKQLTSLN 333
>gi|149279200|ref|ZP_01885332.1| hypothetical protein PBAL39_12805 [Pedobacter sp. BAL39]
gi|149229962|gb|EDM35349.1| hypothetical protein PBAL39_12805 [Pedobacter sp. BAL39]
Length = 1105
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 125/459 (27%), Positives = 204/459 (44%), Gaps = 31/459 (6%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCS-NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++ +++S SD+ GL C+ NLQ L +F + + D LE RG +L L+ RN
Sbjct: 605 QIVQIEISRSDLEGHGLAFFSSCAINLQILQLSFNM-LEDKYLEVFRGAESLRYLNLDRN 663
Query: 117 NAITAQGMKAFAGLINLVKLDLERCT------RIHGGLVNLKG----LMKLE-------- 158
++ F GL NL LDL ++ G NLK L +LE
Sbjct: 664 R-FNGSCLRNFVGL-NLEHLDLSYNEITDDNLKLLGSCPNLKSINLHLNELEGHGFDIFE 721
Query: 159 -SLNIKW----CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ ++W N +TD ++ S +L +L ++ ++ SG YLK + L L+L
Sbjct: 722 STTELEWLTLGSNRLTDDCLRYFSRNLDLTALYLNENQFNGSGFVYLKNAKSLDTLSLSD 781
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
P+ + L L L YL L +L D G + F+ L+ + L ITD+ L L
Sbjct: 782 NPIDSQYLIHFRNLDKLNYLELGNIRLGD-GLKYFTNSYLLEDIRLYNTGITDQDLQSLV 840
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
L+ ++ + E G L L+ L+++D Q+GSS ++ +NLS
Sbjct: 841 FGNKLKRIDFSGNALTGEVFDIFRGKLEFLERLDINDNQIGSSLPDIFKDSHHINEVNLS 900
Query: 333 FTGISDGSLRKLAG-LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
T I+ G L + ++L L + + D L+ L L+L G R T S
Sbjct: 901 NTQINPGHLNYFSHCAATLTRLYMSNLNLQDNDLSVFGGFQQLKDLNLSGNRFTGSFLIQ 960
Query: 392 LRNFK-NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
L++ L L + L D + +++ SSL LNLSQN D + L + + L L
Sbjct: 961 LKHLATELEELNLANNQLNDQNLYYLEAFSSLNTLNLSQNLVEGDGLINLRTSASVLEVL 1020
Query: 451 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
N+S + I+ L+ L+ + L+ + L K + +K L
Sbjct: 1021 NLSGNSISDDDLQFLEHARFLKEVRLADNKFNGSCVKFL 1059
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 96/387 (24%), Positives = 164/387 (42%), Gaps = 28/387 (7%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
G +L +DLS +++TD L L C NL+S++ + ++ G + + L L+
Sbjct: 675 GLNLEHLDLSYNEITDDNLKLLGSCPNLKSINLHLN-ELEGHGFDIFESTTELEWLTL-G 732
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL--------------- 160
+N +T ++ F+ ++L L L G V LK L++L
Sbjct: 733 SNRLTDDCLRYFSRNLDLTALYLNENQFNGSGFVYLKNAKSLDTLSLSDNPIDSQYLIHF 792
Query: 161 -NIKWCNCITDSDMKPLSGL---TN---LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
N+ N + +++ GL TN L+ +++ + +TD + L KL ++ G
Sbjct: 793 RNLDKLNYLELGNIRLGDGLKYFTNSYLLEDIRLYNTGITDQDLQSLVFGNKLKRIDFSG 852
Query: 214 CPVTAACLDSLSA-LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+T D L L L++N Q+ + F + +NL +I L +
Sbjct: 853 NALTGEVFDIFRGKLEFLERLDINDNQIGSSLPDIFKDSHHINEVNLSNTQINPGHLNYF 912
Query: 273 KG-LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL-TNLESIN 330
L L + + + D L G LK L LS + S L L L T LE +N
Sbjct: 913 SHCAATLTRLYMSNLNLQDNDLSVFGGFQQLKDLNLSGNRFTGSFLIQLKHLATELEELN 972
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL-TSLTGLTHLDLFGARITDSGA 389
L+ ++D +L L SSL +LNL + GL L TS + L L+L G I+D
Sbjct: 973 LANNQLNDQNLYYLEAFSSLNTLNLSQNLVEGDGLINLRTSASVLEVLNLSGNSISDDDL 1032
Query: 390 AYLRNFKNLRSLEICGGGLTDAGVKHI 416
+L + + L+ + + + VK +
Sbjct: 1033 QFLEHARFLKEVRLADNKFNGSCVKFL 1059
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 91/207 (43%), Gaps = 3/207 (1%)
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAG 346
I DE L G + +E+S + + GL S NL+ + LSF + D L G
Sbjct: 592 IQDEMLSCFEGCDQIVQIEISRSDLEGHGLAFFSSCAINLQILQLSFNMLEDKYLEVFRG 651
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
SL+ LNLD + + L L L HLDL ITD L + NL+S+ +
Sbjct: 652 AESLRYLNLDRNRFNGSCLRNFVGL-NLEHLDLSYNEITDDNLKLLGSCPNLKSINLHLN 710
Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 466
L G + + L L L N LTD L S L +L ++ ++ +G +LK
Sbjct: 711 ELEGHGFDIFESTTELEWLTLGSN-RLTDDCLRYFSRNLDLTALYLNENQFNGSGFVYLK 769
Query: 467 PLKNLRSLTLESCKVTANDIKRLQSRD 493
K+L +L+L + + + ++ D
Sbjct: 770 NAKSLDTLSLSDNPIDSQYLIHFRNLD 796
>gi|290999054|ref|XP_002682095.1| predicted protein [Naegleria gruberi]
gi|284095721|gb|EFC49351.1| predicted protein [Naegleria gruberi]
Length = 357
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 142/286 (49%), Gaps = 24/286 (8%)
Query: 168 ITDSD-MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
T+ D +K + L +L L + + + G Y+ L+KL L++ + A +S
Sbjct: 47 FTNEDGLKSIGTLKHLIHLCVDFNGIGLEGANYISQLEKLESLSIRYNYIGAEGAKVISE 106
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD-- 284
+ +L +LN++ ++ +G + S++ L L++G N++ DE ++ L L L +L++D
Sbjct: 107 MKTLTWLNVSSNRIGGEGAKAISQMKQLTYLDIGDNKVGDEEVILLSELDQLTALSIDRI 166
Query: 285 --------------------SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
+C I DE L+ + L L++ + + G++ LSGL+
Sbjct: 167 NPDGINAISKMNKLVSLSINNCTILDE-CEELSKMKQLTLLDIKSNGISAKGVKQLSGLS 225
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
L +N+S D + ++ + L L ++ QI+D G+ +L L LT LD+ I
Sbjct: 226 QLTHLNISSNAFGDDGAKSISEIKQLTELFVNDCQISDDGMKSLGDLNELTILDISNNYI 285
Query: 385 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
TD G+ YL + L +LE+ L+ GVKH+ +++ LT L++ N
Sbjct: 286 TDEGSLYLTKLEKLTALEVNNNELSYQGVKHMINMNQLTALSIRHN 331
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 151/326 (46%), Gaps = 13/326 (3%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG----GLVNLKGLMKLESL 160
+ NLT L+ ++ G+K+ L +L+ L C +G G + L KLESL
Sbjct: 35 MKNLTHLTLG-SHFTNEDGLKSIGTLKHLIHL----CVDFNGIGLEGANYISQLEKLESL 89
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+I++ N I K +S + L L +S +++ G + +++LT L++ V
Sbjct: 90 SIRY-NYIGAEGAKVISEMKTLTWLNVSSNRIGGEGAKAISQMKQLTYLDIGDNKVGDEE 148
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
+ LS L L L+++R ++ DG SK+ L L++ I DEC L + L
Sbjct: 149 VILLSELDQLTALSIDR--INPDGINAISKMNKLVSLSINNCTILDEC-EELSKMKQLTL 205
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
L++ S GI +G+ L+GL L L +S G G + +S + L + ++ ISD
Sbjct: 206 LDIKSNGISAKGVKQLSGLSQLTHLNISSNAFGDDGAKSISEIKQLTELFVNDCQISDDG 265
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
++ L L+ L L++ ITD G LT L LT L++ ++ G ++ N L +
Sbjct: 266 MKSLGDLNELTILDISNNYITDEGSLYLTKLEKLTALEVNNNELSYQGVKHMINMNQLTA 325
Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLN 426
L I T + L LLN
Sbjct: 326 LSIRHNQFTFVQNEVFSQFKQLKLLN 351
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 149/326 (45%), Gaps = 33/326 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLE---HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
LK L+ L + C+ + GLE ++ L L SLS R N I A+G K + + L
Sbjct: 53 LKSIGTLKHL-IHLCVDFNGIGLEGANYISQLEKLESLSIRYN-YIGAEGAKVISEMKTL 110
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
L++ N I K +S + L L I +KV
Sbjct: 111 TWLNVS-------------------------SNRIGGEGAKAISQMKQLTYLDIGDNKVG 145
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
D + L L +LT L+++ + ++++S + L L++N C + D+ CE+ SK+
Sbjct: 146 DEEVILLSELDQLTALSID--RINPDGINAISKMNKLVSLSINNCTILDE-CEELSKMKQ 202
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
L +L++ N I+ + + L GL+ L LN+ S GD+G +++ + L L ++D Q+
Sbjct: 203 LTLLDIKSNGISAKGVKQLSGLSQLTHLNISSNAFGDDGAKSISEIKQLTELFVNDCQIS 262
Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
G++ L L L +++S I+D L L L +L ++ +++ G+ + ++
Sbjct: 263 DDGMKSLGDLNELTILDISNNYITDEGSLYLTKLEKLTALEVNNNELSYQGVKHMINMNQ 322
Query: 374 LTHLDLFGARITDSGAAYLRNFKNLR 399
LT L + + T FK L+
Sbjct: 323 LTALSIRHNQFTFVQNEVFSQFKQLK 348
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 142/320 (44%), Gaps = 26/320 (8%)
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
++ L + A + + +L +L L ++DG + + L L + FN I
Sbjct: 13 QIKFLTFNYNTLGAKVIQGFVLMKNLTHLTLGSHFTNEDGLKSIGTLKHLIHLCVDFNGI 72
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
E ++ L LESL++ IG EG ++ + L L +S ++G G + +S +
Sbjct: 73 GLEGANYISQLEKLESLSIRYNYIGAEGAKVISEMKTLTWLNVSSNRIGGEGAKAISQMK 132
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
L +++ + D + L+ L L +L++D +I G+ A++ + L L + I
Sbjct: 133 QLTYLDIGDNKVGDEEVILLSELDQLTALSID--RINPDGINAISKMNKLVSLSINNCTI 190
Query: 385 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN-------------- 430
D L K L L+I G++ GVK + LS LT LN+S N
Sbjct: 191 LDE-CEELSKMKQLTLLDIKSNGISAKGVKQLSGLSQLTHLNISSNAFGDDGAKSISEIK 249
Query: 431 ---------CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
C ++D ++ + L L L++SN+ IT G +L L+ L +L + + ++
Sbjct: 250 QLTELFVNDCQISDDGMKSLGDLNELTILDISNNYITDEGSLYLTKLEKLTALEVNNNEL 309
Query: 482 TANDIKRLQSRDLPNLVSFR 501
+ +K + + + +S R
Sbjct: 310 SYQGVKHMINMNQLTALSIR 329
>gi|72385483|ref|XP_846409.1| leucine-rich repeat protein (LRRP) [Trypanosoma brucei TREU927]
gi|9366582|emb|CAB95344.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 1449
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 134/475 (28%), Positives = 204/475 (42%), Gaps = 90/475 (18%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS + + D + ++ +C +L +L+ FC I+D
Sbjct: 855 LSNTRINDENVRYVSECKSLNTLNLAFCKDITD--------------------------- 887
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ A + + L +L+L+ C I G+ L L K L++K C + DSD + S L N K
Sbjct: 888 VTALSKITMLEELNLDCCHNIRKGIETLGKLPKARILSMKECY-MGDSDAQQCSILGNSK 946
Query: 184 SL-----QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
SL + S ++ ++ + L++L L + C+ S S L L LNL
Sbjct: 947 SLVKLNLERSMGFISVKALSNIATLEELVLDHAR----EVCCIPSFSCLPRLRVLNLKYT 1002
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GI--GDEGL-- 293
++ D + S+ SL++LNL + + V L L+ LE LN+ SC GI G E L
Sbjct: 1003 DINGDVTKNISESKSLRLLNLSHCKWVTDISV-LSSLSTLEELNVSSCYGIKKGWESLGK 1061
Query: 294 -----------VNLTG-----------LCNLK---CLELSDTQV---------------- 312
N+T L L+ C ELSD V
Sbjct: 1062 LPLLRVAILSDTNITAKDIACLSSCKTLVKLQFSWCEELSDVTVVYEIQSLEELIVKKYS 1121
Query: 313 -GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTS 370
G GL L L L ++L SD S+ + SL LN++ R ++TD + L++
Sbjct: 1122 DGLKGLNALGTLPRLRFLHLRNVRGSDISVESIGTSKSLVRLNIEMRGELTD--ITPLSN 1179
Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
+T L L L+ R T GA L LRSL++ ++D+ + +I +T LNL+ +
Sbjct: 1180 ITSLEELSLWECRDTLEGAWTLERLPRLRSLDLGLSDISDSTLYYICLSRFITSLNLTSS 1239
Query: 431 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 485
LTD + IS LT L LN+ ++G L L LR L LES VT D
Sbjct: 1240 WKLTD--ISGISKLTALEELNLRGCHRITSGWEALSELPRLRVLNLESTSVTTRD 1292
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 144/515 (27%), Positives = 221/515 (42%), Gaps = 95/515 (18%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L G+N W + Q L LS + +TD + H C NL +LD +FC
Sbjct: 611 ALNELNLNNCFGINAGWEAIEKLQ--QLHVAILSNTHITDRDISHFSKCKNLVTLDLSFC 668
Query: 92 IQISD-------GGLEHL---------RGLSNLTSLSFRRNNAITAQGMKAFAGLI---- 131
++ D LE L +GLS L L R + +G++ +I
Sbjct: 669 NKLLDVTTLSNITTLEELNLDSCSNIRKGLSVLGELP--RLCVLNIKGVELEDSVIGSLG 726
Query: 132 ---NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI- 187
+ V+L LE C + G + L L+ LE LN+ +C+ +T S M L L L+ L +
Sbjct: 727 NGNSFVRLSLEHC-KGFGDVTPLSNLVTLEELNLHYCDKVT-SGMGTLGRLLQLRVLDLG 784
Query: 188 -------------------------SCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACL 221
C K+T S IA L L++L N++ C +
Sbjct: 785 RTQVDNNSLENICTSSIPLVLLNLSHCKKITSISAIASLTALEEL---NIDNCCNVTSGW 841
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLES 280
+ L L L+ +++D+ S+ SL LNL F +ITD + L +T LE
Sbjct: 842 NVFGTLHQLRVATLSNTRINDENVRYVSECKSLNTLNLAFCKDITD--VTALSKITMLEE 899
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI---NLSFTGIS 337
LNLD C +G+ L L + L + + +G S + S L N +S+ NL + +
Sbjct: 900 LNLDCCHNIRKGIETLGKLPKARILSMKECYMGDSDAQQCSILGNSKSLVKLNLERS-MG 958
Query: 338 DGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
S++ L+ +++L+ L LD AR++ + S + L L + + TD
Sbjct: 959 FISVKALSNIATLEELVLDHAREV-----CCIPSFSCLPRLRVLNLKYTD---------- 1003
Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456
G +T K+I + SL LLNLS +TD + ++S L+ L LNVS+
Sbjct: 1004 -------INGDVT----KNISESKSLRLLNLSHCKWVTD--ISVLSSLSTLEELNVSSCY 1050
Query: 457 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 491
G L L LR L +TA DI L S
Sbjct: 1051 GIKKGWESLGKLPLLRVAILSDTNITAKDIACLSS 1085
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 115/429 (26%), Positives = 176/429 (41%), Gaps = 81/429 (18%)
Query: 133 LVKLDLERCTRIHGGLVNLKGL---MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
L++L LE T GL++++ L + LE L++ C I D+ + L L LK L +S
Sbjct: 518 LLQLTLESIT----GLIDVEALANILTLEKLSLHGCTGI-DAGIGCLGNLPQLKMLDLSG 572
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+ + + L Q + LNL C + +S+L +L LNLN C + G E
Sbjct: 573 TNTDNESLRSLCLSQTMVSLNLSHC-WKMTNVSHISSLEALNELNLNNCFGINAGWEAIE 631
Query: 250 KIGSLKVLNLGFNEITDECLVH-----------------------LKGLTNLESLNLDSC 286
K+ L V L ITD + H L +T LE LNLDSC
Sbjct: 632 KLQQLHVAILSNTHITDRDISHFSKCKNLVTLDLSFCNKLLDVTTLSNITTLEELNLDSC 691
Query: 287 GIGDEGLV---NLTGLC--NLKCLELSDTQVGSSG---------LRH---------LSGL 323
+GL L LC N+K +EL D+ +GS G L H LS L
Sbjct: 692 SNIRKGLSVLGELPRLCVLNIKGVELEDSVIGSLGNGNSFVRLSLEHCKGFGDVTPLSNL 751
Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD--------------------- 362
LE +NL + + L L L+ L+L Q+ +
Sbjct: 752 VTLEELNLHYCDKVTSGMGTLGRLLQLRVLDLGRTQVDNNSLENICTSSIPLVLLNLSHC 811
Query: 363 ---TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
T ++A+ SLT L L++ SG LR + + D V+++ +
Sbjct: 812 KKITSISAIASLTALEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRINDENVRYVSEC 871
Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 479
SL LNL+ ++TD T +S +T L LN+ G+ L L R L+++ C
Sbjct: 872 KSLNTLNLAFCKDITDVT--ALSKITMLEELNLDCCHNIRKGIETLGKLPKARILSMKEC 929
Query: 480 KVTANDIKR 488
+ +D ++
Sbjct: 930 YMGDSDAQQ 938
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 108/373 (28%), Positives = 167/373 (44%), Gaps = 21/373 (5%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ + L L +L++ C I G +L G + L + I IT D+ LS L
Sbjct: 1032 ISVLSSLSTLEELNVSSCYGIKKGWESL-GKLPLLRVAILSDTNITAKDIACLSSCKTLV 1090
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
LQ S C +++D + Y +Q L L ++ L++L L L +L+L + SD
Sbjct: 1091 KLQFSWCEELSDVTVVY--EIQSLEELIVKKYSDGLKGLNALGTLPRLRFLHLRNVRGSD 1148
Query: 243 DGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
E SL LN+ E+TD + L +T+LE L+L C EG L L
Sbjct: 1149 ISVESIGTSKSLVRLNIEMRGELTD--ITPLSNITSLEELSLWECRDTLEGAWTLERLPR 1206
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS---SLKSLNLDAR 358
L+ L+L + + S L ++ + S+NL+ S L ++G+S +L+ LNL
Sbjct: 1207 LRSLDLGLSDISDSTLYYICLSRFITSLNLT----SSWKLTDISGISKLTALEELNLRGC 1262
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAG-VKHI 416
+G AL+ L L L+L +T G Y+ K+L +L I +TDA + +I
Sbjct: 1263 HRITSGWEALSELPRLRVLNLESTSVTTRDGGYYISRCKSLVTLNIQLSDMTDASCLANI 1322
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
K L L + C+ + + L L LN+ S IT LR ++P + L L
Sbjct: 1323 KTLEELHI----GECDELTQGFSALFTLPRLRILNLMGSLITDEDLREIQPPHTIEELNL 1378
Query: 477 ESCKVTANDIKRL 489
CK NDI L
Sbjct: 1379 SYCK-NLNDITPL 1390
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 104/363 (28%), Positives = 165/363 (45%), Gaps = 39/363 (10%)
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEG 213
+KL L++ CN ITD+ P+S L L+ L + SC +T GI L L +L +L+L G
Sbjct: 303 VKLSKLSVSECNNITDA--TPISQLAALEELNVNSCYHIT-KGIGTLGMLLRLRMLDLSG 359
Query: 214 CPVTAACLDSLSALGSLFYLNLNRC-QLSD---------------DGCEKFSK------- 250
PV CL L GSL LNL+ C QL+D +GC + ++
Sbjct: 360 VPVEDNCLKDLCDCGSLERLNLSYCIQLTDINPLSSATAIEELNLNGCRRITRGIGVVWA 419
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD 309
+ L+VL++ ++ D + L + L+L++C G GD L L+ + L+ L +
Sbjct: 420 LPKLRVLHMKDVQLEDSVIGSLGNGNSFVRLSLENCAGFGDMTL--LSSIVTLEELNIQK 477
Query: 310 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL---A 366
SG+ L L L +N+ IS + SL L L++ TGL
Sbjct: 478 CADIISGVGCLGTLPYLRVLNVKEVHISSLDFTGIGASKSLLQLTLES----ITGLIDVE 533
Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
AL ++ L L L G D+G L N L+ L++ G + ++ + ++ LN
Sbjct: 534 ALANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTMVSLN 593
Query: 427 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 486
LS +T+ + IS L L LN++N +AG ++ L+ L L + +T DI
Sbjct: 594 LSHCWKMTN--VSHISSLEALNELNLNNCFGINAGWEAIEKLQQLHVAILSNTHITDRDI 651
Query: 487 KRL 489
Sbjct: 652 SHF 654
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 117/438 (26%), Positives = 191/438 (43%), Gaps = 40/438 (9%)
Query: 20 LTEVSLEAFRD--CALQDLCLGQYPGVNDKWMDVIA------SQGSSLLSVDLSGSD-VT 70
L E+ L+ R+ C CL + +N K+ D+ S+ SL ++LS VT
Sbjct: 971 LEELVLDHAREVCCIPSFSCLPRLRVLNLKYTDINGDVTKNISESKSLRLLNLSHCKWVT 1030
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D + L S L+ L+ + C I G E L L L ++ + ITA+ + +
Sbjct: 1031 DISV--LSSLSTLEELNVSSCYGIKKG-WESLGKLP-LLRVAILSDTNITAKDIACLSSC 1086
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD----MKPLSGLTNLKSLQ 186
LVKL C + V + + LE L +K SD + L L L+ L
Sbjct: 1087 KTLVKLQFSWCEELSDVTV-VYEIQSLEELIVK-----KYSDGLKGLNALGTLPRLRFLH 1140
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD--SLSALGSLFYLNLNRCQLSDDG 244
+ + +D + + + L LN+E + D LS + SL L+L C+ + +G
Sbjct: 1141 LRNVRGSDISVESIGTSKSLVRLNIE---MRGELTDITPLSNITSLEELSLWECRDTLEG 1197
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
++ L+ L+LG ++I+D L ++ + SLNL S L +++G+ L
Sbjct: 1198 AWTLERLPRLRSLDLGLSDISDSTLYYICLSRFITSLNLTSSW----KLTDISGISKLTA 1253
Query: 305 LE---LSDTQVGSSGLRHLSGLTNLESINLSFTGIS--DGSLRKLAGLSSLKSLNLDARQ 359
LE L +SG LS L L +NL T ++ DG ++ SL +LN+
Sbjct: 1254 LEELNLRGCHRITSGWEALSELPRLRVLNLESTSVTTRDGGYY-ISRCKSLVTLNIQLSD 1312
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
+TD + L ++ L L + G + L LR L + G +TD ++ I+
Sbjct: 1313 MTDA--SCLANIKTLEELHIGECDELTQGFSALFTLPRLRILNLMGSLITDEDLREIQPP 1370
Query: 420 SSLTLLNLSQNCNLTDKT 437
++ LNLS NL D T
Sbjct: 1371 HTIEELNLSYCKNLNDIT 1388
>gi|115689700|ref|XP_783241.2| PREDICTED: F-box/LRR-repeat protein 13-like [Strongylocentrotus
purpuratus]
Length = 871
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 225/500 (45%), Gaps = 76/500 (15%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL- 77
LT+ S +A C LQDL + + PG+ND M +A S LL +++S +++TD+ L L
Sbjct: 312 LTKPSFKAVGQCRNLQDLNMSECPGLNDDTMKYVAEGCSVLLYLNISFTNITDATLRLLA 371
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
+ CSNLQ L +C + SD GL++L RG L L IT G K +G
Sbjct: 372 RCCSNLQYLSLAYCKRFSDKGLQYLGTGRGGRRLVHLDLSGCPQITVNGYKNISG----- 426
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQ-ISCSKV 192
G KL+ L I C + D + ++ N++ + + +
Sbjct: 427 ------------------GCPKLQHLIINDCYTLRDDMIVAVAANCHNIRCISFLYTPNI 468
Query: 193 TDSGIAYLKGLQKLTLLNLEG-CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
TD + L +KL + +EG C +T A S LG + ++L +SD C +
Sbjct: 469 TDVALKALAVHRKLQQIRIEGNCKITDA---SFKLLGR-YCVDLRHIYVSD--CPR---- 518
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLK------ 303
ITD L L N+ LN+ C I D G+ NL G K
Sbjct: 519 ------------ITDAALKSLATCRNINVLNVADCIRISDNGVRNLVEGPSGPKLREMNL 566
Query: 304 --CLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQI 360
C+ ++D + ++ +L + F+ I+D L + +L SL++ I
Sbjct: 567 TNCVRVTDVSI----MKITQKCYSLVYGSFCFSEHITDAGAEMLGNMPALSSLDISGCNI 622
Query: 361 TDTGLAALTSLTGLTHLDLFGA-RITDSG-AAYLRNFKNLRSLEICGG-GLTDAGVKHIK 417
TDTGL AL + L + L +ITD G + + ++L L+I LTD +K++
Sbjct: 623 TDTGLGALGNCYHLRDVVLSECHQITDLGIQKFAQQCRDLDRLDISHCLQLTDQAIKNLA 682
Query: 418 D-LSSLTLLNLSQNCNLTDKTLELISGLTG-LVSLNVSNS-RITSAGLRHL-KPLKNLRS 473
L+ LN++ L+D ++ ISG+ L SLN S +++ +R L K LK LR+
Sbjct: 683 FCCRKLSFLNIAGCSQLSDMSIRYISGVCHYLQSLNFSGCIKVSDDSMRFLRKGLKRLRN 742
Query: 474 LTLESCK-VTANDIKRLQSR 492
L + C +T I +L ++
Sbjct: 743 LNMLYCHLITKPTIVKLSAK 762
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 118/455 (25%), Positives = 204/455 (44%), Gaps = 64/455 (14%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL--KGLMK 156
L+H R + L+ + + +T KA NL L++ C ++ + +G
Sbjct: 294 LQHYRPY--VLHLNIKGCSMLTKPSFKAVGQCRNLQDLNMSECPGLNDDTMKYVAEGCSV 351
Query: 157 LESLNIKWCNCITDSDMKPLSGL-TNLKSLQIS-CSKVTDSGIAYL---KGLQKLTLLNL 211
L LNI + N ITD+ ++ L+ +NL+ L ++ C + +D G+ YL +G ++L L+L
Sbjct: 352 LLYLNISFTN-ITDATLRLLARCCSNLQYLSLAYCKRFSDKGLQYLGTGRGGRRLVHLDL 410
Query: 212 EGCP-VTAACLDSLSA-LGSLFYLNLNRCQ-LSDD-------GCEKFSKIGSLKVLNLGF 261
GCP +T ++S L +L +N C L DD C I L N
Sbjct: 411 SGCPQITVNGYKNISGGCPKLQHLIINDCYTLRDDMIVAVAANCHNIRCISFLYTPN--- 467
Query: 262 NEITDECLVHLKGLTNLESLNLD-SCGIGDEGLVNLTGLC-NLKCLELSD-TQVGSSGLR 318
ITD L L L+ + ++ +C I D L C +L+ + +SD ++ + L+
Sbjct: 468 --ITDVALKALAVHRKLQQIRIEGNCKITDASFKLLGRYCVDLRHIYVSDCPRITDAALK 525
Query: 319 HLSGLTNLESINLS-FTGISDGSLRKLAGLSS---LKSLNL-DARQITDTGLAALTS-LT 372
L+ N+ +N++ ISD +R L S L+ +NL + ++TD + +T
Sbjct: 526 SLATCRNINVLNVADCIRISDNGVRNLVEGPSGPKLREMNLTNCVRVTDVSIMKITQKCY 585
Query: 373 GLTHLDL-FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV------KHIKD------- 418
L + F ITD+GA L N L SL+I G +TD G+ H++D
Sbjct: 586 SLVYGSFCFSEHITDAGAEMLGNMPALSSLDISGCNITDTGLGALGNCYHLRDVVLSECH 645
Query: 419 -LSSLTLLNLSQNC------------NLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLR 463
++ L + +Q C LTD+ ++ L L LN++ S+++ +R
Sbjct: 646 QITDLGIQKFAQQCRDLDRLDISHCLQLTDQAIKNLAFCCRKLSFLNIAGCSQLSDMSIR 705
Query: 464 HLKPL-KNLRSLTLESCKVTANDIKRLQSRDLPNL 497
++ + L+SL C ++D R + L L
Sbjct: 706 YISGVCHYLQSLNFSGCIKVSDDSMRFLRKGLKRL 740
>gi|290994542|ref|XP_002679891.1| predicted protein [Naegleria gruberi]
gi|284093509|gb|EFC47147.1| predicted protein [Naegleria gruberi]
Length = 359
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 143/304 (47%), Gaps = 1/304 (0%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ A+G + L +L LD+ + G ++ + +L LNI N I K +
Sbjct: 51 VNAEGANMISNLAHLADLDISNNQLLERGSKIIREMTQLTKLNISRNN-INAGGTKSICE 109
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+T L L IS + + + G +Y+ G+ KLT L++ + + SL + +L LN++ C
Sbjct: 110 MTQLTDLDISNNFIGNEGASYIGGMTKLTNLSISENHIGVEGIKSLFHINNLICLNISSC 169
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
++ D+G S++ L L + NEI + + L LN+ +G+EG +
Sbjct: 170 KIGDEGARLISEMKQLTTLEISHNEIGSYGSKAISEMYQLTKLNIRYNVLGNEGAHYIGI 229
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
+ L L++S ++ G + LS L+ L ++++ I D ++ ++ L L L++
Sbjct: 230 MEQLTELDISHNRISGEGAKSLSKLSQLTKLDINTNEIGDEGMKSISKLDQLLYLDIGEN 289
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
+I D G + ++ LT L + R+ + GA L L L+IC + D ++ +
Sbjct: 290 EIGDIGTGLIIGMSKLTELLINDNRVGNDGAESLAQMHQLTQLDICNNPVNDDSLELLSK 349
Query: 419 LSSL 422
L L
Sbjct: 350 LPDL 353
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 89/348 (25%), Positives = 157/348 (45%), Gaps = 11/348 (3%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
G+ L S +K CN I + G L L +S V G + L L L++
Sbjct: 20 GIGTLVSDTVKLCNFI------RMCG--KLTKLDVSSWLVNAEGANMISNLAHLADLDIS 71
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+ + + L LN++R ++ G + ++ L L++ N I +E ++
Sbjct: 72 NNQLLERGSKIIREMTQLTKLNISRNNINAGGTKSICEMTQLTDLDISNNFIGNEGASYI 131
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
G+T L +L++ IG EG+ +L + NL CL +S ++G G R +S + L ++ +S
Sbjct: 132 GGMTKLTNLSISENHIGVEGIKSLFHINNLICLNISSCKIGDEGARLISEMKQLTTLEIS 191
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
I + ++ + L LN+ + + G + + LT LD+ RI+ GA L
Sbjct: 192 HNEIGSYGSKAISEMYQLTKLNIRYNVLGNEGAHYIGIMEQLTELDISHNRISGEGAKSL 251
Query: 393 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
L L+I + D G+K I L L L++ +N + D LI G++ L L +
Sbjct: 252 SKLSQLTKLDINTNEIGDEGMKSISKLDQLLYLDIGEN-EIGDIGTGLIIGMSKLTELLI 310
Query: 453 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 500
+++R+ + G L + L L + C ND LP+L++F
Sbjct: 311 NDNRVGNDGAESLAQMHQLTQLDI--CNNPVNDDSLELLSKLPDLINF 356
>gi|434405929|ref|YP_007148814.1| Leucine Rich Repeat (LRR)-containing protein [Cylindrospermum
stagnale PCC 7417]
gi|428260184|gb|AFZ26134.1| Leucine Rich Repeat (LRR)-containing protein [Cylindrospermum
stagnale PCC 7417]
Length = 384
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 157/290 (54%), Gaps = 23/290 (7%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D+KPLS LTNL + I +++ D I L L KL LNL + + LS L +L
Sbjct: 107 DIKPLSNLTNLTGINIYYNQIID--IKPLSNLTKLIYLNLIKNEFSD--IKPLSNLTNLI 162
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
YL L+R Q++D + S + +L L+L N+I+D + L LT L L L I D
Sbjct: 163 YLGLSRNQIND--IKPLSNLTNLTTLDLIENKISD--IEPLSNLTKLTYLTLIENKISD- 217
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
+ L+ L NL L L + ++ S ++HLS LT L + LS ISD ++ L+ L++L
Sbjct: 218 -IKPLSNLTNLTALYLWNNEI--SDIKHLSNLTKLTYLLLSENKISD--IKPLSNLTNLT 272
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
SL LD QI+D + L++LT LT+L+L +I+D L N NL SL + + +
Sbjct: 273 SLGLDENQISD--IKPLSNLTNLTYLNLGLNQISDIKV--LSNLTNLTSLYLDYNQI--S 326
Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
++ + +L++LT ++L N ++D ++ +S +T L L + N+ I
Sbjct: 327 NIQPLFNLNNLTKIDLDYN-QISD--IKPLSNMTKLEKLEIQNNPIPDKA 373
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 142/262 (54%), Gaps = 30/262 (11%)
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
T C + L L L L ++SD + S + +L L+LGFN+I D + L LT
Sbjct: 60 TQNCNQANQKLTQLKELKLGSNKISD--IKPLSNLNNLIYLDLGFNQIID--IKPLSNLT 115
Query: 277 NLESLNLDSCGIGD-EGLVNLTGLCNLKCL--ELSDTQVGSSGLRHLSGLTNLESINLSF 333
NL +N+ I D + L NLT L L + E SD ++ LS LTNL + LS
Sbjct: 116 NLTGINIYYNQIIDIKPLSNLTKLIYLNLIKNEFSD-------IKPLSNLTNLIYLGLSR 168
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
I+D ++ L+ L++L +L+L +I+D + L++LT LT+L L +I+D L
Sbjct: 169 NQIND--IKPLSNLTNLTTLDLIENKISD--IEPLSNLTKLTYLTLIENKISDIKP--LS 222
Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
N NL +L + ++D +KH+ +L+ LT L LS+N ++D ++ +S LT L SL +
Sbjct: 223 NLTNLTALYLWNNEISD--IKHLSNLTKLTYLLLSEN-KISD--IKPLSNLTNLTSLGLD 277
Query: 454 NSRITSAGLRHLKPLKNLRSLT 475
++I+ +KPL NL +LT
Sbjct: 278 ENQIS-----DIKPLSNLTNLT 294
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 118/270 (43%), Gaps = 52/270 (19%)
Query: 63 DLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ 122
+L+G ++ + +I +K SNL L + I+ ++ L L+NL L RN
Sbjct: 116 NLTGINIYYNQIIDIKPLSNLTKLIYLNLIKNEFSDIKPLSNLTNLIYLGLSRNQI---N 172
Query: 123 GMKAFAGLINLVKLDL-----------------ERCTRIHGGLVNLKGLMKLESLN--IK 163
+K + L NL LDL T I + ++K L L +L
Sbjct: 173 DIKPLSNLTNLTTLDLIENKISDIEPLSNLTKLTYLTLIENKISDIKPLSNLTNLTALYL 232
Query: 164 WCNCITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
W N I+D SD+KPLS LTNL SL + ++++D I L L
Sbjct: 233 WNNEISDIKHLSNLTKLTYLLLSENKISDIKPLSNLTNLTSLGLDENQISD--IKPLSNL 290
Query: 204 QKLTLLNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
LT LNL ++ L +L+ L SL YL+ N+ + + +L ++L +N
Sbjct: 291 TNLTYLNLGLNQISDIKVLSNLTNLTSL-YLDYNQIS----NIQPLFNLNNLTKIDLDYN 345
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEG 292
+I+D + L +T LE L + + I D+
Sbjct: 346 QISD--IKPLSNMTKLEKLEIQNNPIPDKA 373
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 15/132 (11%)
Query: 72 SGLIHLKDCSNLQSL--DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
S + L + +NL SL D N QISD ++ LSNLT+L++ +K +
Sbjct: 260 SDIKPLSNLTNLTSLGLDEN---QISD-----IKPLSNLTNLTYLNLGLNQISDIKVLSN 311
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
L NL L L+ + + N++ L L +L + SD+KPLS +T L+ L+I
Sbjct: 312 LTNLTSLYLD-----YNQISNIQPLFNLNNLTKIDLDYNQISDIKPLSNMTKLEKLEIQN 366
Query: 190 SKVTDSGIAYLK 201
+ + D ++
Sbjct: 367 NPIPDKACPFIP 378
>gi|328950290|ref|YP_004367625.1| hypothetical protein Marky_0765 [Marinithermus hydrothermalis DSM
14884]
gi|328450614|gb|AEB11515.1| hypothetical protein Marky_0765 [Marinithermus hydrothermalis DSM
14884]
Length = 462
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 121/379 (31%), Positives = 174/379 (45%), Gaps = 59/379 (15%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
+L+++DL G+ + D L L + L+ LD +I+D L L+NLT L
Sbjct: 81 EHAVNLVTLDLKGNRIAD--LTPLAELRYLEELDL-VSNRITD-----LAPLANLTRLKR 132
Query: 114 RR--NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
NN + Q ++ AGL L +L + R+ L L L +L L + W N +TD
Sbjct: 133 LHLGNNQV--QSLEPLAGLTQLTELRIGN-NRV-ADLAPLADLGRLAVL-VAWRNAVTD- 186
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
++PL+ LT ++ L ++ ++VTD L L+ L L
Sbjct: 187 -LQPLANLTRMRVLSLASNRVTD--------------------------LTPLAELAQLD 219
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
L L+ Q++D + + LKVL+L FN IT L L L L L LD+ I D
Sbjct: 220 TLFLSENQIAD--LAPLAGLTQLKVLSLDFNRITH--LDPLARLVELTELGLDANQIAD- 274
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
L L GL NL+ L S+ ++ L L GL LE + L+F I D S L GL +LK
Sbjct: 275 -LTPLAGLTNLQVLSASENRIAD--LTPLGGLVRLEQLGLNFNRIRDIS--ALEGLKALK 329
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
L L+ QI + LA L LT L L L RI D L NL LE+ +TD
Sbjct: 330 VLELEGNQIVN--LAPLAGLTELRVLVLGQNRIAD--LTPLGALVNLVQLEVSRNEITDL 385
Query: 412 GVKHIKDLSSLTLLNLSQN 430
G + L +L ++L +N
Sbjct: 386 GA--LAQLENLVRVSLVRN 402
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 99/228 (43%), Gaps = 44/228 (19%)
Query: 124 MKAFAGLINL--VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+ AGL L + LD R T + L L++L L + N I +D+ PL+GLTN
Sbjct: 231 LAPLAGLTQLKVLSLDFNRITHLDP----LARLVELTELGLD-ANQI--ADLTPLAGLTN 283
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L+ L S +++ D + L GL +L L LN NR +
Sbjct: 284 LQVLSASENRIAD--LTPLGGLVRLEQLG----------------------LNFNRIR-- 317
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
+ +LKVL L N+I + L L GLT L L L I D L L L N
Sbjct: 318 --DISALEGLKALKVLELEGNQIVN--LAPLAGLTELRVLVLGQNRIAD--LTPLGALVN 371
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGLS 348
L LE+S ++ G L+ L NL ++L +++ G L AGL
Sbjct: 372 LVQLEVSRNEITDLG--ALAQLENLVRVSLVRNRVTNLGPLVANAGLQ 417
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 29/156 (18%)
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
L+ L++LN R+I L L L LDL G RI D L + L L++
Sbjct: 61 LARLEALNAAERRIQ--SLEGLEHAVNLVTLDLKGNRIAD--LTPLAELRYLEELDLVSN 116
Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA------ 460
+TD + + +L+ L L+L N ++LE ++GLT L L + N+R+
Sbjct: 117 RITD--LAPLANLTRLKRLHLGNN---QVQSLEPLAGLTQLTELRIGNNRVADLAPLADL 171
Query: 461 -----------GLRHLKPLKNL---RSLTLESCKVT 482
+ L+PL NL R L+L S +VT
Sbjct: 172 GRLAVLVAWRNAVTDLQPLANLTRMRVLSLASNRVT 207
>gi|149174147|ref|ZP_01852775.1| hypothetical protein PM8797T_13198 [Planctomyces maris DSM 8797]
gi|148847127|gb|EDL61462.1| hypothetical protein PM8797T_13198 [Planctomyces maris DSM 8797]
Length = 476
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 105/198 (53%), Gaps = 20/198 (10%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+ +TD ++ + + L +S SKVTD+GI YL+G +L LNL G VT A L+ L
Sbjct: 265 SAVTDQILRDFNYWNKVSGLWLSRSKVTDAGIEYLRGATRLYSLNLSGTEVTDATLEHLK 324
Query: 226 ALGSLFYLNLNRCQLSDDGC-EKFSKIGSLKV-----------------LNLGFNEITDE 267
L L +NL Q+S G E + S+++ L L +T E
Sbjct: 325 GLPELHSVNLRGTQVSPRGVLELIASSDSMQIAFPGGWVWKLENAHGFQLKLSSPAVTGE 384
Query: 268 CLVHLKGLTNLES-LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
L+ L G +++ L+LD + DEGL +L G +L+ L +S+TQ+ S+GL HL+GL +L
Sbjct: 385 -LLKLFGTVRVQAYLDLDGIALTDEGLASLGGFEDLRTLRISNTQISSAGLNHLAGLASL 443
Query: 327 ESINLSFTGISDGSLRKL 344
++L + ++D + KL
Sbjct: 444 RELDLRGSAVADEDINKL 461
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 107/221 (48%), Gaps = 10/221 (4%)
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
T ESL + D+ L + + L LS ++V +G+ +L G T L S+NLS T
Sbjct: 257 TGFESLG--HSAVTDQILRDFNYWNKVSGLWLSRSKVTDAGIEYLRGATRLYSLNLSGTE 314
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
++D +L L GL L S+NL Q++ G+ L + + + G + A+
Sbjct: 315 VTDATLEHLKGLPELHSVNLRGTQVSPRGVLELIASSDSMQIAFPGGWVWKLENAHGFQL 374
Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 455
K L S + G L G ++ L+L LTD+ L + G L +L +SN+
Sbjct: 375 K-LSSPAVTGELLKLFGTVRVQ-----AYLDL-DGIALTDEGLASLGGFEDLRTLRISNT 427
Query: 456 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 496
+I+SAGL HL L +LR L L V DI +LQ R LPN
Sbjct: 428 QISSAGLNHLAGLASLRELDLRGSAVADEDINKLQ-RALPN 467
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 98/196 (50%), Gaps = 6/196 (3%)
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
+ +L ++D F+ + L L +++TD + +L+G T L SLNL + D
Sbjct: 259 FESLGHSAVTDQILRDFNYWNKVSGLWLSRSKVTDAGIEYLRGATRLYSLNLSGTEVTDA 318
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
L +L GL L + L TQV G+ L + + +S+ ++F G G + KL +
Sbjct: 319 TLEHLKGLPELHSVNLRGTQVSPRGVLEL--IASSDSMQIAFPG---GWVWKLENAHGFQ 373
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
L L + +T L ++ +LDL G +TD G A L F++LR+L I ++ A
Sbjct: 374 -LKLSSPAVTGELLKLFGTVRVQAYLDLDGIALTDEGLASLGGFEDLRTLRISNTQISSA 432
Query: 412 GVKHIKDLSSLTLLNL 427
G+ H+ L+SL L+L
Sbjct: 433 GLNHLAGLASLRELDL 448
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 115/246 (46%), Gaps = 23/246 (9%)
Query: 22 EVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCS 81
E+S+ FRD + L + V D+ + + + + + LS S VTD+G+ +L+ +
Sbjct: 248 EISMVEFRDTGFESLG---HSAVTDQILRDF-NYWNKVSGLWLSRSKVTDAGIEYLRGAT 303
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
L SL+ + +++D LEHL+GL L S++ R + G++ L+
Sbjct: 304 RLYSLNLS-GTEVTDATLEHLKGLPELHSVNLRGTQV-------SPRGVLELIASSDSMQ 355
Query: 142 TRIHGGLVNLKGLMKLES---LNIKWCNCITDSDMKPLSGLTNLKS-LQISCSKVTDSGI 197
GG V KLE+ +K + ++ L G +++ L + +TD G+
Sbjct: 356 IAFPGGWV-----WKLENAHGFQLKLSSPAVTGELLKLFGTVRVQAYLDLDGIALTDEGL 410
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
A L G + L L + +++A L+ L+ L SL L+L ++D+ K + +L
Sbjct: 411 ASLGGFEDLRTLRISNTQISSAGLNHLAGLASLRELDLRGSAVADEDINKLQR--ALPNC 468
Query: 258 NLGFNE 263
+ +NE
Sbjct: 469 KIDWNE 474
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%)
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
+FT I+ G + +L +TD L ++ L L +++TD+G Y
Sbjct: 239 AFTTIAAGDEISMVEFRDTGFESLGHSAVTDQILRDFNYWNKVSGLWLSRSKVTDAGIEY 298
Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
LR L SL + G +TDA ++H+K L L +NL LELI+
Sbjct: 299 LRGATRLYSLNLSGTEVTDATLEHLKGLPELHSVNLRGTQVSPRGVLELIA 349
>gi|46447197|ref|YP_008562.1| hypothetical protein pc1563 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400838|emb|CAF24287.1| hypothetical protein pc1563 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 380
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 5/209 (2%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LK+C NL+ L C ++D GL HL L L L+ +T G+
Sbjct: 172 LTDTHLLALKNCKNLKELHLQDCYMLTDAGLAHLASLVALQHLNLAGCRKLTDAGLAHLT 231
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ L L L C + GL +L L+ L+ L++ C +T + L L L+ L +
Sbjct: 232 PLVVLQYLSLAGCDNLTDAGLAHLTPLVALQHLDLNGCPNLTGVGLAHLKPLVALQHLNL 291
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
S C K+TD+G+A+LK L L LNL GC +T A L L L +L +L+L C L+D G
Sbjct: 292 SWCDKLTDAGLAHLKPLVALHYLNLAGCDKLTDAGLVHLMPLVTLQHLDLTACSNLTDVG 351
Query: 245 CEKFSKIGSLKVLNLGF-NEITDECLVHL 272
+ +L+ LNLG+ +TD L H+
Sbjct: 352 LAHLKPLVALQHLNLGWCPNLTDAGLAHI 380
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 125/232 (53%), Gaps = 13/232 (5%)
Query: 247 KFSKI---GSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSCGI-GDEGLVNLTGL 299
KF KI S ++ L F+E +TD L+ LK NL+ L+L C + D GL +L L
Sbjct: 149 KFEKILNHFSNEIEGLNFSEKYSLTDTHLLALKNCKNLKELHLQDCYMLTDAGLAHLASL 208
Query: 300 CNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA 357
L+ L L+ ++ +GL HL+ L L+ ++L+ ++D L L L +L+ L+L+
Sbjct: 209 VALQHLNLAGCRKLTDAGLAHLTPLVVLQYLSLAGCDNLTDAGLAHLTPLVALQHLDLNG 268
Query: 358 -RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVK 414
+T GLA L L L HL+L + ++TD+G A+L+ L L + G LTDAG+
Sbjct: 269 CPNLTGVGLAHLKPLVALQHLNLSWCDKLTDAGLAHLKPLVALHYLNLAGCDKLTDAGLV 328
Query: 415 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHL 465
H+ L +L L+L+ NLTD L + L L LN+ +T AGL H+
Sbjct: 329 HLMPLVTLQHLDLTACSNLTDVGLAHLKPLVALQHLNLGWCPNLTDAGLAHI 380
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 109/210 (51%), Gaps = 7/210 (3%)
Query: 278 LESLNL-DSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FT 334
+E LN + + D L+ L NLK L L D + +GL HL+ L L+ +NL+
Sbjct: 161 IEGLNFSEKYSLTDTHLLALKNCKNLKELHLQDCYMLTDAGLAHLASLVALQHLNLAGCR 220
Query: 335 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL 392
++D L L L L+ L+L +TD GLA LT L L HLDL G +T G A+L
Sbjct: 221 KLTDAGLAHLTPLVVLQYLSLAGCDNLTDAGLAHLTPLVALQHLDLNGCPNLTGVGLAHL 280
Query: 393 RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
+ L+ L + LTDAG+ H+K L +L LNL+ LTD L + L L L+
Sbjct: 281 KPLVALQHLNLSWCDKLTDAGLAHLKPLVALHYLNLAGCDKLTDAGLVHLMPLVTLQHLD 340
Query: 452 VSN-SRITSAGLRHLKPLKNLRSLTLESCK 480
++ S +T GL HLKPL L+ L L C
Sbjct: 341 LTACSNLTDVGLAHLKPLVALQHLNLGWCP 370
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 122/244 (50%), Gaps = 30/244 (12%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E LN +TD+ + L NLK L + C +TD+G+A+L L L LNL GC
Sbjct: 160 EIEGLNFSEKYSLTDTHLLALKNCKNLKELHLQDCYMLTDAGLAHLASLVALQHLNLAGC 219
Query: 215 -PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVH 271
+T A L L+ L L YL+L C L+D G + + +L+ L+L G +T L H
Sbjct: 220 RKLTDAGLAHLTPLVVLQYLSLAGCDNLTDAGLAHLTPLVALQHLDLNGCPNLTGVGLAH 279
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
LK L L+ LNL C +L+D +GL HL L L +NL
Sbjct: 280 LKPLVALQHLNLSWCD------------------KLTD-----AGLAHLKPLVALHYLNL 316
Query: 332 S-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSG 388
+ ++D L L L +L+ L+L A +TD GLA L L L HL+L + +TD+G
Sbjct: 317 AGCDKLTDAGLVHLMPLVTLQHLDLTACSNLTDVGLAHLKPLVALQHLNLGWCPNLTDAG 376
Query: 389 AAYL 392
A++
Sbjct: 377 LAHI 380
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 7/168 (4%)
Query: 317 LRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGL 374
L H S +E +N S ++D L L +LK L+L D +TD GLA L SL L
Sbjct: 154 LNHFSN--EIEGLNFSEKYSLTDTHLLALKNCKNLKELHLQDCYMLTDAGLAHLASLVAL 211
Query: 375 THLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCN 432
HL+L G R +TD+G A+L L+ L + G LTDAG+ H+ L +L L+L+ N
Sbjct: 212 QHLNLAGCRKLTDAGLAHLTPLVVLQYLSLAGCDNLTDAGLAHLTPLVALQHLDLNGCPN 271
Query: 433 LTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 479
LT L + L L LN+S ++T AGL HLKPL L L L C
Sbjct: 272 LTGVGLAHLKPLVALQHLNLSWCDKLTDAGLAHLKPLVALHYLNLAGC 319
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 28/157 (17%)
Query: 62 VDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+ L+G D +TD+GL HL LQ LD N C ++ GL HL+
Sbjct: 239 LSLAGCDNLTDAGLAHLTPLVALQHLDLNGCPNLTGVGLAHLK----------------- 281
Query: 121 AQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
L+ L L+L C ++ GL +LK L+ L LN+ C+ +TD+ + L L
Sbjct: 282 --------PLVALQHLNLSWCDKLTDAGLAHLKPLVALHYLNLAGCDKLTDAGLVHLMPL 333
Query: 180 TNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L+ L + +CS +TD G+A+LK L L LNL CP
Sbjct: 334 VTLQHLDLTACSNLTDVGLAHLKPLVALQHLNLGWCP 370
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DL+G ++T GL HLK LQ L+ ++C +++D GL HL+ L L L+
Sbjct: 260 ALQHLDLNGCPNLTGVGLAHLKPLVALQHLNLSWCDKLTDAGLAHLKPLVALHYLNLAGC 319
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDS 171
+ +T G+ L+ L LDL C+ + GL +LK L+ L+ LN+ WC +TD+
Sbjct: 320 DKLTDAGLVHLMPLVTLQHLDLTACSNLTDVGLAHLKPLVALQHLNLGWCPNLTDA 375
>gi|347547841|ref|YP_004854169.1| putative internalin A [Listeria ivanovii subsp. ivanovii PAM 55]
gi|346980912|emb|CBW84831.1| Putative internalin A [Listeria ivanovii subsp. ivanovii PAM 55]
Length = 798
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 138/445 (31%), Positives = 209/445 (46%), Gaps = 67/445 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ ++ DL + V+D+ + D + SL+ + S G+E+L +N+T L F N
Sbjct: 54 AEVVKTDLGKATVSDT--VTQTDLDGITSLEADRKGITSIAGVEYL---NNVTQLDFSYN 108
Query: 117 NAITAQGMKAFAGLINLVKL-DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+ L NL KL L L L+ L L L + + N ITD + P
Sbjct: 109 Q------ITDLTPLANLTKLTSLVMNNNQIADLTPLQNLTSLTELTL-FYNKITD--VAP 159
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD--SLSALGSLFYL 233
L+ LTNL +L I TD+ I+ + + LT NLEG + D L+ L L L
Sbjct: 160 LANLTNLTNLAI-----TDNEISDVTPIGNLT--NLEGLSIGNKVTDIKPLANLTKLERL 212
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
NL+R +++D +K+ +L+ L+L N+ +D L L LTNL L+L S + D G
Sbjct: 213 NLSRNKITD--ISPVAKLINLQSLSLDNNQFSD--LTPLGILTNLTELSLYSNHLSDIG- 267
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L L NLK L L D Q+ S L +S LTNL +NLS ISD L+ ++ L++L L
Sbjct: 268 -TLASLTNLKKLNLMDNQI--SNLAPISNLTNLTDLNLSTNQISD--LKPISNLTNLTVL 322
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
+ Q+ D ++ ++SL L L L+ +I+D + L N L+ L ++D V
Sbjct: 323 QVPTNQLED--ISPISSLPNLEFLTLYTNQISD--LSPLENLTKLKQLFFYDNKVSD--V 376
Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 473
I +L+SL L+ N IS LT L L +R+T GL
Sbjct: 377 SPIANLTSLQELSAGTNQ---------ISDLTPLAKL----TRLTQLGL----------- 412
Query: 474 LTLESCKVTANDIKRLQSRDLPNLV 498
+ KVT+ +K + +PN V
Sbjct: 413 ---DKQKVTSQPVKYQSNLVVPNAV 434
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 123/388 (31%), Positives = 177/388 (45%), Gaps = 60/388 (15%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+D S + +TD L L + + L SL N QI+D L L+ L++LT L+ N
Sbjct: 103 LDFSYNQITD--LTPLANLTKLTSLVMNNN-QIAD--LTPLQNLTSLTELTLFYNKITDV 157
Query: 122 QGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
+ L NL D E T I G L NL+GL N +TD +KPL+ L
Sbjct: 158 APLANLTNLTNLAITDNEISDVTPI-GNLTNLEGL--------SIGNKVTD--IKPLANL 206
Query: 180 TNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
T L+ L +S +K+TD S +A L LQ L+L N + +T L L +L L+L
Sbjct: 207 TKLERLNLSRNKITDISPVAKLINLQSLSLDNNQFSDLTP-----LGILTNLTELSLYSN 261
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
LSD G + + +LK LNL N+I++ L + LTNL LNL + I D L ++
Sbjct: 262 HLSDIGT--LASLTNLKKLNLMDNQISN--LAPISNLTNLTDLNLSTNQISD--LKPISN 315
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS------------------ 340
L NL L++ Q+ + +S L NLE + L ISD S
Sbjct: 316 LTNLTVLQVPTNQL--EDISPISSLPNLEFLTLYTNQISDLSPLENLTKLKQLFFYDNKV 373
Query: 341 --LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF--- 395
+ +A L+SL+ L+ QI+D L L LT LT L L ++T Y N
Sbjct: 374 SDVSPIANLTSLQELSAGTNQISD--LTPLAKLTRLTQLGLDKQKVTSQPVKYQSNLVVP 431
Query: 396 ---KNLRSLEICGGGLTDAGVKHIKDLS 420
KN+ I ++D G D++
Sbjct: 432 NAVKNVTGALINPATISDNGTYTNPDIT 459
>gi|334119190|ref|ZP_08493277.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
FGP-2]
gi|333458661|gb|EGK87278.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
FGP-2]
Length = 489
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 116/342 (33%), Positives = 175/342 (51%), Gaps = 33/342 (9%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
KL S+ + N +D+KPL LTNL L +S +++ D I L+ L LT L L
Sbjct: 81 AYQKLSSIEELYLNDKKINDIKPLESLTNLTGLVLSDNQIND--IKPLESLTNLTKLYLG 138
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+ + L +L +L L L+ ++SD + + +L L+L N+ D + L
Sbjct: 139 NNKIKD--IKPLQSLTNLTQLGLHNTRISD--IKPLQSLTNLTKLDLSNNKTLD--IKPL 192
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
+ LTNL L LD+ I D + L L NL L+L Q+ ++ L LTNL S++L
Sbjct: 193 QSLTNLTKLYLDNNKIKD--IKPLESLTNLTHLQLMSNQIK--DIKPLESLTNLTSLHLY 248
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
ISD ++ L L+ L L LD +I+D + L SLT LT + L +I+D L
Sbjct: 249 NNQISD--IKPLESLTKLTWLWLDNNKISD--IKPLKSLTNLTEIKLGSNKISDIKP--L 302
Query: 393 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
+ NL SL + ++D +K ++ L+ LT L L N K LE ++ LTG+V +
Sbjct: 303 ESLTNLTSLYLHNNQISD--IKPLESLTKLTSLWLINNQISDIKPLESLTNLTGIV---L 357
Query: 453 SNSRITSAGLRHLKPLKNLRSLTLESCKVTAN---DIKRLQS 491
SN+RI+ +KPL++L LTL +T N DIK L+S
Sbjct: 358 SNNRISD-----IKPLESLNKLTL--LALTNNQISDIKPLES 392
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 114/373 (30%), Positives = 172/373 (46%), Gaps = 58/373 (15%)
Query: 97 GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 156
++ L L+NLT L N +K L NL KL L + + ++K L
Sbjct: 99 NDIKPLESLTNLTGLVLSDNQI---NDIKPLESLTNLTKLYLG-----NNKIKDIKPLQS 150
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L +L + SD+KPL LTNL L +S +K D +K LQ LT L
Sbjct: 151 LTNLTQLGLHNTRISDIKPLQSLTNLTKLDLSNNKTLD-----IKPLQSLTNL------- 198
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
+ YL+ N+ + + + +L L L N+I D + L+ LT
Sbjct: 199 ------------TKLYLDNNKIK----DIKPLESLTNLTHLQLMSNQIKD--IKPLESLT 240
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
NL SL+L + I D + L L L L L + ++ S ++ L LTNL I L I
Sbjct: 241 NLTSLHLYNNQISD--IKPLESLTKLTWLWLDNNKI--SDIKPLKSLTNLTEIKLGSNKI 296
Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
SD ++ L L++L SL L QI+D + L SLT LT L L +I+D L +
Sbjct: 297 SD--IKPLESLTNLTSLYLHNNQISD--IKPLESLTKLTSLWLINNQISDIKP--LESLT 350
Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456
NL + + ++D +K ++ L+ LTLL L+ N K LE ++ LTG+V
Sbjct: 351 NLTGIVLSNNRISD--IKPLESLNKLTLLALTNNQISDIKPLESLTNLTGIV-------- 400
Query: 457 ITSAGLRHLKPLK 469
+ S ++ +KPL+
Sbjct: 401 LMSNQIQDIKPLQ 413
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 146/327 (44%), Gaps = 63/327 (19%)
Query: 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
D LQSL + + + ++ ++ L +LT+L+ + + + +K L NL L L
Sbjct: 188 DIKPLQSLTNLTKLYLDNNKIKDIKPLESLTNLTHLQLMSNQIKDIKPLESLTNLTSLHL 247
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
+ + ++K L L L W + SD+KPL LTNL +++ +K++D
Sbjct: 248 -----YNNQISDIKPLESLTKLTWLWLDNNKISDIKPLKSLTNLTEIKLGSNKISD---- 298
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVL 257
L+SL+ L SL+ L+ Q+SD E +K+ SL ++
Sbjct: 299 -------------------IKPLESLTNLTSLY---LHNNQISDIKPLESLTKLTSLWLI 336
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
N N+I+D + L+ LTNL + L + I D + L L L L L++ Q+ S +
Sbjct: 337 N---NQISD--IKPLESLTNLTGIVLSNNRISD--IKPLESLNKLTLLALTNNQI--SDI 387
Query: 318 RHLSGLTNLESINLSFTGISD--------------------GSLRKLAGLSSLKSLNLDA 357
+ L LTNL I L I D ++ L L++L L+L+
Sbjct: 388 KPLESLTNLTGIVLMSNQIQDIKPLQSLTNLTLLALTNNKISDIKPLQSLTNLTLLSLEK 447
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARI 384
QI+D + L SLT LT + L G I
Sbjct: 448 NQISD--IKPLESLTNLTEIRLSGNPI 472
>gi|414878156|tpg|DAA55287.1| TPA: hypothetical protein ZEAMMB73_170021 [Zea mays]
Length = 663
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 138/480 (28%), Positives = 227/480 (47%), Gaps = 38/480 (7%)
Query: 34 QDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCI 92
+ +CL + GV + ++ + + L +VDLS D L + L+ L + C+
Sbjct: 111 RSVCLARANGVGWRGLEALVAACPKLEAVDLSHCVSAGDREAAALAAAAGLRELRLDKCL 170
Query: 93 QISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDLERCTRIHGGLVN 150
++D GL + G L LS + I+ G+ A L L++ +G L +
Sbjct: 171 AVTDMGLAKVAVGCPRLEKLSLKWCREISDIGIDLLAKKCPELRSLNISYLKVGNGSLRS 230
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYL-KGLQKLT 207
+ L +LE L + C+CI D ++ LS G +L+S+ +S C VT G+A L G L
Sbjct: 231 ISSLERLEELAMVCCSCIDDEGLELLSKGSDSLQSVDVSRCDHVTSHGLASLIDGRNFLQ 290
Query: 208 LLNLEGC--PVTAACLDSLSALG-SLFYLNLNRCQLSD-------DGCEKFSKIGSLK-- 255
L C + + L+ L +L L L+ ++SD + C K +IG K
Sbjct: 291 KLYAADCLHEIGQRFVSKLATLKETLTTLKLDGLEVSDSLLEAIGESCNKLVEIGLSKCS 350
Query: 256 -VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG-DEGLVNLTGLCN-LKCLEL-SDTQ 311
V + G + + C ++L +++L C + + L ++ G C L+CL L S +
Sbjct: 351 GVTDEGISSLVARC-------SDLRTIDLTCCNLSTNNALDSIAGNCKMLECLRLESCSL 403
Query: 312 VGSSGLRHLSGL-TNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALT 369
+ GL+ ++ NL+ I+L+ G+ D +L LA S L+ L L I+D G+A ++
Sbjct: 404 INEKGLKRIATCCPNLKEIDLTDCGVDDAALEHLAKCSELRVLKLGLCSSISDKGIAFIS 463
Query: 370 SLTG-LTHLDLFG-ARITDSGAAYLRN-FKNLRSLEIC-GGGLTDAGVKHIKDLSSLTLL 425
S G L LDL+ + ITD G A L N K ++ L +C +TD G+ H+ L LT L
Sbjct: 464 SNCGKLVELDLYRCSSITDDGLAALANGCKRIKLLNLCYCNKITDTGLGHLGSLEELTNL 523
Query: 426 NLSQNCNLTDKTLELIS-GLTGLVSLNVSNSR-ITSAGLRHLKPLK-NLRSLTLESCKVT 482
L +T + ++ G L+ L++ + AGL L NLR LT+ C+VT
Sbjct: 524 ELRCLVRITGIGISSVAIGCKNLIELDLKRCYSVDDAGLWALARYALNLRQLTISYCQVT 583
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 108/230 (46%), Gaps = 32/230 (13%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+N+K + IA+ +L +DL+ V D+ L HL CS L+ L C ISD G+ +
Sbjct: 404 INEKGLKRIATCCPNLKEIDLTDCGVDDAALEHLAKCSELRVLKLGLCSSISDKGIAFIS 463
Query: 104 G-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L L R ++IT G+ A A G +++ LN+
Sbjct: 464 SNCGKLVELDLYRCSSITDDGLAALAN-----------------------GCKRIKLLNL 500
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLK-GLQKLTLLNLEGC-PVTAA 219
+CN ITD+ + L L L +L++ C ++T GI+ + G + L L+L+ C V A
Sbjct: 501 CYCNKITDTGLGHLGSLEELTNLELRCLVRITGIGISSVAIGCKNLIELDLKRCYSVDDA 560
Query: 220 CLDSLSALG-SLFYLNLNRCQLSDDG-CEKFSKIGSL---KVLNLGFNEI 264
L +L+ +L L ++ CQ++ G C S + L K+++L + I
Sbjct: 561 GLWALARYALNLRQLTISYCQVTGLGLCHLLSSLRCLQDIKMVHLSWVSI 610
>gi|290993851|ref|XP_002679546.1| LRR_RI domain-containing protein [Naegleria gruberi]
gi|284093163|gb|EFC46802.1| LRR_RI domain-containing protein [Naegleria gruberi]
Length = 385
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 149/307 (48%), Gaps = 15/307 (4%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-----LEGCPVTAACLDSLSALGSLFYL 233
L L L IS +++ G + L++LT L LEG + +S L L L
Sbjct: 86 LQQLTRLVISWNRIGIEGAKAISQLKQLTELEINQIGLEGTKI-------ISELNQLTSL 138
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
N+ ++ G + S++ L L++G N++ E + +++ L L +L++ + IG G
Sbjct: 139 NIANNKMGKQGAKYISEMKQLTKLDIGTNQLGVEGVQYIRKLDKLTALSVFNNVIGFRGA 198
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
+ L + L L +S +G G + +S L NL +NLSF IS + ++ L L L
Sbjct: 199 MLLRKMTQLTELNISTNAIGDVGAKFVSDLPNLAILNLSFNSISYVGAQFISKLPKLTEL 258
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAG 412
N++ + + G+ ++ + LT+L L RI + G ++ K LR L++C + DAG
Sbjct: 259 NMNQNDLGNEGVKFISGIISLTNLSLQTTRIDEHGVKFISEKLKQLRILKLCENNIGDAG 318
Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL-KPLKNL 471
K + L LT L+L N N+ + + IS + L L + + I G + + + LK L
Sbjct: 319 AKFLITLEKLTDLSLYSN-NIGYEGAKAISTMKALTHLRIHGNPIGIEGAKEIYEQLKEL 377
Query: 472 RSLTLES 478
+ L+
Sbjct: 378 KEYCLDQ 384
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 128/295 (43%), Gaps = 7/295 (2%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
+S + + G + L L+ N QI G + + L+ LTSL+ NN + QG
Sbjct: 94 ISWNRIGIEGAKAISQLKQLTELEIN---QIGLEGTKIISELNQLTSLNIA-NNKMGKQG 149
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
K + + L KLD+ G+ ++ L KL +L++ + N I L +T L
Sbjct: 150 AKYISEMKQLTKLDIGTNQLGVEGVQYIRKLDKLTALSV-FNNVIGFRGAMLLRKMTQLT 208
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L IS + + D G ++ L L +LNL ++ +S L L LN+N+ L ++
Sbjct: 209 ELNISTNAIGDVGAKFVSDLPNLAILNLSFNSISYVGAQFISKLPKLTELNMNQNDLGNE 268
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
G + S I SL L+L I + + + + L L L L IGD G L L L
Sbjct: 269 GVKFISGIISLTNLSLQTTRIDEHGVKFISEKLKQLRILKLCENNIGDAGAKFLITLEKL 328
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS-DGSLRKLAGLSSLKSLNLD 356
L L +G G + +S + L + + I +G+ L LK LD
Sbjct: 329 TDLSLYSNNIGYEGAKAISTMKALTHLRIHGNPIGIEGAKEIYEQLKELKEYCLD 383
>gi|72385469|ref|XP_846402.1| leucine-rich repeat protein (LRRP) [Trypanosoma brucei TREU927]
gi|9366571|emb|CAB95333.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 1448
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 112/414 (27%), Positives = 184/414 (44%), Gaps = 56/414 (13%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
++A A ++ L KL L CT I G+ L L +L+ L++ N +S ++ L +
Sbjct: 531 VEALANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNES-LRSLCLSQTVV 589
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
SL +S C K+T+ ++++ L+ L LNL C A +++ L L L+ ++D
Sbjct: 590 SLNLSHCWKMTN--VSHISSLEALNELNLSNCIRINAGWEAIEKLQQLHVAILSNTHITD 647
Query: 243 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV---NLTG 298
FSK +L L+L F N++ D + L +T LE LNLDSC +GL L
Sbjct: 648 RDISHFSKCKNLVTLDLSFCNKLLD--VTTLSNITTLEELNLDSCSNIRKGLSVLGELPR 705
Query: 299 LC--NLKCLELSDTQVGS------------------SGLRHLSGLTNLESINLSFTGISD 338
LC N+K ++L D+ +GS G+ LS L LE +NL +
Sbjct: 706 LCVLNIKGVQLEDSVIGSLGNGNSFVRLSLENCKGFGGVTPLSNLVTLEELNLHYCDKVT 765
Query: 339 GSLRKLAGLSSLKSLNLDARQITD------------------------TGLAALTSLTGL 374
+ L L L+ L+L Q+ D T ++A+ SLT L
Sbjct: 766 SGMGTLGRLLQLRVLDLGRTQVDDNSLENICTCSSPLVSLNLSHCKKITSISAIASLTAL 825
Query: 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
L++ SG LR + + D ++H+ + SL LNL+ ++T
Sbjct: 826 EELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRINDENIQHVSECKSLNTLNLAFCKDIT 885
Query: 435 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
D T +S +T L LN+ G+ L L +R L+++ C + +D ++
Sbjct: 886 DVT--ALSTITMLEELNLDCCHNIRKGIETLGKLPKVRILSMKECYMGDSDAQQ 937
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 128/455 (28%), Positives = 191/455 (41%), Gaps = 50/455 (10%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD----------------------GGLEH 101
LS + + D + H+ +C +L +L+ FC I+D G+E
Sbjct: 854 LSNTRINDENIQHVSECKSLNTLNLAFCKDITDVTALSTITMLEELNLDCCHNIRKGIET 913
Query: 102 LRGLSNLTSLSFRR--NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
L L + LS + AQ +LVKL+LER G +++K L + +
Sbjct: 914 LGKLPKVRILSMKECYMGDSDAQQCSILGNSKSLVKLNLERSM----GFISVKALSNIAT 969
Query: 160 LNIKWCNCITDS-----DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
L + DS D+ S L L+ L + + + D + + L LNL C
Sbjct: 970 LE----ELVLDSVCGIYDVLSFSCLPRLRVLNLKYTDINDDVTKNISESKSLQSLNLSHC 1025
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
+ LS+L +L LN+N C G E K+ L+V L IT + + L
Sbjct: 1026 KWVTD-ISVLSSLSTLEELNVNFCNGIRKGWESLGKLPLLRVAILSDTNITAKDIACLSS 1084
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE---LSDTQVGSSGLRHLSGLTNLESINL 331
L L C E L ++T + ++ LE + G GL L L+ L ++L
Sbjct: 1085 CKKLVKLQFFRC----EKLSDVTVVYEIQSLEELIVRKYSDGLKGLNALGTLSRLRFLHL 1140
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
SD S+ + SL LN++ R+ +TD L+++T L L L T GA
Sbjct: 1141 RNARGSDISVESIGTSKSLVRLNIETREELTDA--TPLSNITSLEELSLRDCGDTLEGAW 1198
Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
L LRSL++ ++D + I +T LNL N LTD + IS LT L L
Sbjct: 1199 TLGKLPRLRSLDLGLSDISDNTLDEICLSRFITSLNLRYNFKLTD--ISSISNLTALEEL 1256
Query: 451 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 485
N+S ++G L L LR L LES VT D
Sbjct: 1257 NLSGCHRITSGWEALSELPRLRVLNLESTSVTTRD 1291
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 114/428 (26%), Positives = 188/428 (43%), Gaps = 38/428 (8%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ ++L ++L+ +++ DS + + C L L + C ++D + L+ L L+
Sbjct: 276 SRLTNLKCLELNSTNIDDSCVEEISACVKLSKLSVSECNNVTDAT--PISQLAALEELNL 333
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+N +G+ L+ L LDL L +L LE LNI +C I +D+
Sbjct: 334 --SNCHITKGIGTLGMLLRLRILDLSGVPVEDNCLKDLCDCGSLERLNISYC--IQLTDI 389
Query: 174 KPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
PLS T ++ L ++ C ++T GI + L +L +L+++ ++ LDS+ G L
Sbjct: 390 NPLSNATAIEELNLNGCRRIT-RGIGVVWALPRLRILHMKDVHLSEPSLDSVGTGGLLVK 448
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
++L+ C GF ++T L + LE LN+ C G
Sbjct: 449 VSLDNCA--------------------GFGDMT-----LLSSIVTLEELNIQKCADIISG 483
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLK 351
+ L L L+ L + + + S + +L + L SFTG+S+ + LA + +L+
Sbjct: 484 VGCLGTLPYLRVLNVKEVHISSLDFIGIGASKSLLQLTLESFTGLSN--VEALANILTLE 541
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
L+L D G+ L +L L LDL G + L + + SL +
Sbjct: 542 KLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSLNL-SHCWKMT 600
Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 471
V HI L +L LNLS NC + E I L L +SN+ IT + H KNL
Sbjct: 601 NVSHISSLEALNELNLS-NCIRINAGWEAIEKLQQLHVAILSNTHITDRDISHFSKCKNL 659
Query: 472 RSLTLESC 479
+L L C
Sbjct: 660 VTLDLSFC 667
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 131/479 (27%), Positives = 212/479 (44%), Gaps = 50/479 (10%)
Query: 18 RCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSV-DLSGSDVTDSGLI 75
R + +S++A + A L++L L G+ DV++ L V +L +D+ D
Sbjct: 954 RSMGFISVKALSNIATLEELVLDSVCGI----YDVLSFSCLPRLRVLNLKYTDINDDVTK 1009
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
++ + +LQSL+ + C ++D +S L+SLS L +
Sbjct: 1010 NISESKSLQSLNLSHCKWVTD--------ISVLSSLS-------------------TLEE 1042
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTD 194
L++ C I G +L G + L + I IT D+ LS L LQ C K++D
Sbjct: 1043 LNVNFCNGIRKGWESL-GKLPLLRVAILSDTNITAKDIACLSSCKKLVKLQFFRCEKLSD 1101
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
+ Y +Q L L + L++L L L +L+L + SD E SL
Sbjct: 1102 VTVVY--EIQSLEELIVRKYSDGLKGLNALGTLSRLRFLHLRNARGSDISVESIGTSKSL 1159
Query: 255 KVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
LN+ E+TD L +T+LE L+L CG EG L L L+ L+L + +
Sbjct: 1160 VRLNIETREELTDA--TPLSNITSLEELSLRDCGDTLEGAWTLGKLPRLRSLDLGLSDIS 1217
Query: 314 SSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
+ L + + S+NL + ++D S ++ L++L+ LNL +G AL+ L
Sbjct: 1218 DNTLDEICLSRFITSLNLRYNFKLTDIS--SISNLTALEELNLSGCHRITSGWEALSELP 1275
Query: 373 GLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLNLSQN 430
L L+L +T G Y+ K+L +L + +TDA + +IK L L +
Sbjct: 1276 RLRVLNLESTSVTTRDGGYYISRCKSLVTLNLESCDMTDASCLANIKTLEELHI----GE 1331
Query: 431 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
C+ + + L L LN+ +S IT LR ++P + L L CK NDI L
Sbjct: 1332 CDELTQGFSALFTLPRLRILNLMDSLITDEDLREIQPPHTIEELNLSYCK-NLNDITPL 1389
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 114/459 (24%), Positives = 185/459 (40%), Gaps = 102/459 (22%)
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGL--------MKLESLNIKWCN------------ 166
G+ L +L+ R HG LVN+ L ++L S NI +
Sbjct: 201 LQGVSKLKQLEELRIEYPHGKLVNMISLNNLDMLKRLRLRSNNIDNNDARHLFSVGTLEE 260
Query: 167 -CITD----SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAAC 220
ITD ++++ +S LTNLK L+++ + + DS + + KL+ L++ C VT A
Sbjct: 261 LAITDTMQLTNIREISRLTNLKCLELNSTNIDDSCVEEISACVKLSKLSVSECNNVTDA- 319
Query: 221 LDSLSALGSLFYLNLNRCQLS----------------------DDGCEK-FSKIGSLKVL 257
+S L +L LNL+ C ++ +D C K GSL+ L
Sbjct: 320 -TPISQLAALEELNLSNCHITKGIGTLGMLLRLRILDLSGVPVEDNCLKDLCDCGSLERL 378
Query: 258 NLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ----- 311
N+ + ++TD + L T +E LNL+ C G+ + L L+ L + D
Sbjct: 379 NISYCIQLTD--INPLSNATAIEELNLNGCRRITRGIGVVWALPRLRILHMKDVHLSEPS 436
Query: 312 ---VGSSGL---------------RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
VG+ GL LS + LE +N+ + L L L+ L
Sbjct: 437 LDSVGTGGLLVKVSLDNCAGFGDMTLLSSIVTLEELNIQKCADIISGVGCLGTLPYLRVL 496
Query: 354 NLDARQITD--------------------TGLA---ALTSLTGLTHLDLFGARITDSGAA 390
N+ I+ TGL+ AL ++ L L L G D+G
Sbjct: 497 NVKEVHISSLDFIGIGASKSLLQLTLESFTGLSNVEALANILTLEKLSLHGCTGIDAGIG 556
Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
L N L+ L++ G + ++ + ++ LNLS +T+ + IS L L L
Sbjct: 557 CLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSLNLSHCWKMTN--VSHISSLEALNEL 614
Query: 451 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
N+SN +AG ++ L+ L L + +T DI
Sbjct: 615 NLSNCIRINAGWEAIEKLQQLHVAILSNTHITDRDISHF 653
>gi|443723521|gb|ELU11898.1| hypothetical protein CAPTEDRAFT_102929 [Capitella teleta]
Length = 439
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 109/309 (35%), Positives = 169/309 (54%), Gaps = 36/309 (11%)
Query: 200 LKGLQKLTLLNLEGCP-VTAACL-DSLSA-LGSLFYLNLNRCQLSDD-------GCEKFS 249
++G+ L LNL GC VT + +LS L SL LNL+ C++ D G +K
Sbjct: 131 VEGVPGLRSLNLSGCYNVTDVIMTHALSHDLPSLVSLNLSLCKVITDSTIACIAGHQK-- 188
Query: 250 KIGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN----- 301
L+ L LG +IT L+ L GL+NL LNL SC I DEG+ LTG +
Sbjct: 189 ---QLQELELGGCAQITTNALLLLACGLSNLRRLNLRSCCKITDEGVAYLTGQSHTVPTG 245
Query: 302 ---LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL 355
L+ + L D Q + L++LS G + L+S+NLSF TG++D L L+ + SL+ L+L
Sbjct: 246 TAMLEHIVLQDCQKITDVSLKYLSLGFSQLKSVNLSFCTGVTDSGLECLSRMPSLQELDL 305
Query: 356 DA-RQITDTGLAALTS-LTGLTHLDL-FGARITDSGAAYLRN-FKNLRSLEICGGGLTDA 411
A I+D G+ L LT L+ L L F RITD+ ++ + +L +L +C ++D
Sbjct: 306 RACDGISDHGVGYLAEGLTRLSVLHLSFCDRITDTALLHISHGLIHLTALSLCDCSISDE 365
Query: 412 GVKH-IKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 468
G++H I + LN+ Q LTD +LELI+ T L ++++ +RIT G++HL+
Sbjct: 366 GIQHLIGSSQDIVKLNIGQCDRLTDASLELIAQNFTQLHTIDIYGCTRITKLGVKHLRDQ 425
Query: 469 KNLRSLTLE 477
++ ++ +E
Sbjct: 426 PHISAINME 434
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 99/303 (32%), Positives = 160/303 (52%), Gaps = 26/303 (8%)
Query: 151 LKGLMKLESLNIKWCNCITDSDM-KPLSG-LTNLKSLQIS-CSKVTDSGIAYLKGLQK-L 206
++G+ L SLN+ C +TD M LS L +L SL +S C +TDS IA + G QK L
Sbjct: 131 VEGVPGLRSLNLSGCYNVTDVIMTHALSHDLPSLVSLNLSLCKVITDSTIACIAGHQKQL 190
Query: 207 TLLNLEGCP--VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFS------KIGSLKVL 257
L L GC T A L L +L LNL C +++D+G + G+ +
Sbjct: 191 QELELGGCAQITTNALLLLACGLSNLRRLNLRSCCKITDEGVAYLTGQSHTVPTGTAMLE 250
Query: 258 NLGFNE---ITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ- 311
++ + ITD L +L G + L+S+NL C G+ D GL L+ + +L+ L+L
Sbjct: 251 HIVLQDCQKITDVSLKYLSLGFSQLKSVNLSFCTGVTDSGLECLSRMPSLQELDLRACDG 310
Query: 312 VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLA-GLSSLKSLNLDARQITDTGLAAL 368
+ G+ +L+ GLT L ++LSF I+D +L ++ GL L +L+L I+D G+ L
Sbjct: 311 ISDHGVGYLAEGLTRLSVLHLSFCDRITDTALLHISHGLIHLTALSLCDCSISDEGIQHL 370
Query: 369 T-SLTGLTHLDLFGA-RITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTL 424
S + L++ R+TD+ + +NF L +++I G +T GVKH++D ++
Sbjct: 371 IGSSQDIVKLNIGQCDRLTDASLELIAQNFTQLHTIDIYGCTRITKLGVKHLRDQPHISA 430
Query: 425 LNL 427
+N+
Sbjct: 431 INM 433
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 146/289 (50%), Gaps = 31/289 (10%)
Query: 130 LINLVKLDLERCTRIHGGLVN-LKGLMK-LESLNIKWCNCITDSDMKPLS-GLTNLKSLQ 186
L +LV L+L C I + + G K L+ L + C IT + + L+ GL+NL+ L
Sbjct: 161 LPSLVSLNLSLCKVITDSTIACIAGHQKQLQELELGGCAQITTNALLLLACGLSNLRRLN 220
Query: 187 I-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
+ SC K+TD G+AYL G Q T+ P A L+ ++ L CQ D
Sbjct: 221 LRSCCKITDEGVAYLTG-QSHTV------PTGTAMLE---------HIVLQDCQKITDVS 264
Query: 246 EKFSKIG--SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLC 300
K+ +G LK +NL F +TD L L + +L+ L+L +C GI D G+ L GL
Sbjct: 265 LKYLSLGFSQLKSVNLSFCTGVTDSGLECLSRMPSLQELDLRACDGISDHGVGYLAEGLT 324
Query: 301 NLKCLELSDT-QVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAGLSS-LKSLNL-D 356
L L LS ++ + L H+S GL +L +++L ISD ++ L G S + LN+
Sbjct: 325 RLSVLHLSFCDRITDTALLHISHGLIHLTALSLCDCSISDEGIQHLIGSSQDIVKLNIGQ 384
Query: 357 ARQITDTGLAALTS-LTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 403
++TD L + T L +D++G RIT G +LR+ ++ ++ +
Sbjct: 385 CDRLTDASLELIAQNFTQLHTIDIYGCTRITKLGVKHLRDQPHISAINM 433
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 147/305 (48%), Gaps = 51/305 (16%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA L ++L G + +T + L+ L SNL+ L+ C +I+D G+ +
Sbjct: 175 ITDSTIACIAGHQKQLQELELGGCAQITTNALLLLACGLSNLRRLNLRSCCKITDEGVAY 234
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L G S+ T M L ++V D ++ T + ++L G +L+S+N
Sbjct: 235 LTGQSHTVP---------TGTAM-----LEHIVLQDCQKITDVSLKYLSL-GFSQLKSVN 279
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTA 218
+ +C +TDS ++ LS + +L+ L + +C ++D G+ YL +GL +L++L+L C +T
Sbjct: 280 LSFCTGVTDSGLECLSRMPSLQELDLRACDGISDHGVGYLAEGLTRLSVLHLSFCDRITD 339
Query: 219 ACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGS---LKVLNLG-FNEITDECLVHL- 272
L +S L L L+L C +SD+G + IGS + LN+G + +TD L +
Sbjct: 340 TALLHISHGLIHLTALSLCDCSISDEGIQHL--IGSSQDIVKLNIGQCDRLTDASLELIA 397
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
+ T L ++++ C T++ G++HL ++ +IN+
Sbjct: 398 QNFTQLHTIDIYGC-----------------------TRITKLGVKHLRDQPHISAINME 434
Query: 333 FTGIS 337
S
Sbjct: 435 LFAAS 439
>gi|431930507|ref|YP_007243553.1| TIR domain-containing protein [Thioflavicoccus mobilis 8321]
gi|431828810|gb|AGA89923.1| TIR domain-containing protein [Thioflavicoccus mobilis 8321]
Length = 1283
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 118/371 (31%), Positives = 173/371 (46%), Gaps = 53/371 (14%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD------------- 194
L NL L L +L C+ +D+ PL+GLTNL++L C+ VTD
Sbjct: 108 LSNLGFLAGLTALQYLKCSSTQVADLTPLAGLTNLQALDCGCTPVTDLTPLAGLTNLRSL 167
Query: 195 ----SGIAYLKGLQKLTLLNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+ +A L+ L LT L C T A L L+ L L +L+ +++D E +
Sbjct: 168 DCAYTPVAGLEPLADLTTLKSLDCRHTRVADLAPLAGLTELQFLDCGDTRVAD--LEPVA 225
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELS 308
+ +L+ L+ G + D L L GL NL++L+ + D L +LT L +L C
Sbjct: 226 SLANLQSLDCGGTRVVD--LTPLAGLANLQALDCGFTQVADLAPLASLTNLQSLDCRSAP 283
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
T +G L+ L NL+S+ FT ++D L LAGL++L SLN + D LA L
Sbjct: 284 VTDLGP-----LASLGNLQSLICQFTPVAD--LAPLAGLTNLLSLNCWNTPVID--LAPL 334
Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSL----- 422
S+ L L+ + D A L NLRSLE G +TD A + + +L SL
Sbjct: 335 ASIGNLQSLNCSSTPVAD--LASLAGLTNLRSLECAGSPVTDLAPLAGLTNLRSLDCEGT 392
Query: 423 ------TLLNL----SQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 471
L+NL S +C T T L ++GLT L SL + + A L L L NL
Sbjct: 393 PVADLGPLINLTNLRSLDCGFTRVTDLAPLAGLTNLQSLICRQTPV--ADLAPLAALNNL 450
Query: 472 RSLTLESCKVT 482
+S + ++T
Sbjct: 451 QSFACGNTRIT 461
>gi|209154162|gb|ACI33313.1| F-box/LRR-repeat protein 14 [Salmo salar]
Length = 403
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 111/339 (32%), Positives = 181/339 (53%), Gaps = 50/339 (14%)
Query: 176 LSGLTNLKSLQI-SCSKVTDSGI--AYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLF 231
+ G+ N++SL + C +TD+G+ A+++ + L +LNL C P+T + L ++
Sbjct: 89 IQGMPNIESLNLCGCFNLTDNGLGHAFVQDIPSLRILNLSLCKPITDSSLGRIAQ----- 143
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GI 288
YL +L+VL LG + IT+ L+ + GL L+SLNL SC +
Sbjct: 144 YLK------------------NLEVLELGGLSNITNTGLLLIAWGLHKLKSLNLRSCRHV 185
Query: 289 GDEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-IS 337
D G+ +L G+ L+ L L D Q + L+H+S GL NL+ +NLSF G IS
Sbjct: 186 SDVGIGHLAGMTRSAAEGCLFLEQLTLQDCQKLTDLSLKHVSKGLANLKVLNLSFCGGIS 245
Query: 338 DGSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL- 392
D + L+ ++ L SLNL + I+DTG+ A+ SL L+ LD+ F +I D AY+
Sbjct: 246 DSGMIHLSNMTHLWSLNLRSCDNISDTGIMHLAMGSLQ-LSGLDVSFCDKIGDQSLAYIA 304
Query: 393 RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSL 450
+ L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ LT L +
Sbjct: 305 QGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGI 364
Query: 451 NVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
++ ++IT GL + L L+ L L ++T ++ R
Sbjct: 365 DLYGCTKITKRGLERITQLPCLKVLNLGLWQMTESEKVR 403
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 110/329 (33%), Positives = 170/329 (51%), Gaps = 32/329 (9%)
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKL 157
H RG+ + LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 69 HTRGIKKVQILSLRRSLSYVIQGMP------NIESLNLCGCFNLTDNGLGHAFVQDIPSL 122
Query: 158 ESLNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ L NL+ L++ S +T++G+ + GL KL LNL C
Sbjct: 123 RILNLSLCKPITDSSLGRIAQYLKNLEVLELGGLSNITNTGLLLIAWGLHKLKSLNLRSC 182
Query: 215 PVTA-------ACLDSLSALGSLF--YLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A + +A G LF L L CQ L+D + SK + +LKVLNL F
Sbjct: 183 RHVSDVGIGHLAGMTRSAAEGCLFLEQLTLQDCQKLTDLSLKHVSKGLANLKVLNLSFCG 242
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
I+D ++HL +T+L SLNL SC I D G+++L G L L++S ++G L +
Sbjct: 243 GISDSGMIHLSNMTHLWSLNLRSCDNISDTGIMHLAMGSLQLSGLDVSFCDKIGDQSLAY 302
Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLT 375
++ GL L+S++L ISD + R + + LK+LN+ +ITD GL + LT LT
Sbjct: 303 IAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLT 362
Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEI 403
+DL+G +IT G + L+ L +
Sbjct: 363 GIDLYGCTKITKRGLERITQLPCLKVLNL 391
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 141/290 (48%), Gaps = 41/290 (14%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L ++L G S++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 133 ITDSSLGRIAQYLKNLEVLELGGLSNITNTGLLLIAWGLHKLKSLNLRSCRHVSDVGIGH 192
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL------KGLM 155
L G++ A G + L +L L+ C + L +L KGL
Sbjct: 193 LAGMTR-----------------SAAEGCLFLEQLTLQDCQK----LTDLSLKHVSKGLA 231
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEG 213
L+ LN+ +C I+DS M LS +T+L SL + SC ++D+GI +L G +L+ L++
Sbjct: 232 NLKVLNLSFCGGISDSGMIHLSNMTHLWSLNLRSCDNISDTGIMHLAMGSLQLSGLDVSF 291
Query: 214 CPVTAACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDE 267
C SL+ + Y L+L C +SDDG + + + LK LN+G ITD+
Sbjct: 292 CDKIGD--QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDK 349
Query: 268 CLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
L + LT L ++L C I GL +T L LK L L Q+ S
Sbjct: 350 GLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTES 399
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 125/245 (51%), Gaps = 32/245 (13%)
Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 322
++G+ N+ESLNL C G+G + ++ L L C ++D+ +G R
Sbjct: 89 IQGMPNIESLNLCGCFNLTDNGLGHAFVQDIPSLRILNLSLCKPITDSSLG----RIAQY 144
Query: 323 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT-----GL 374
L NLE + L + I++ L +A GL LKSLNL + R ++D G+ L +T G
Sbjct: 145 LKNLEVLELGGLSNITNTGLLLIAWGLHKLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGC 204
Query: 375 THLDLFG----ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNL 427
L+ ++TD ++ + NL+ +L CGG ++D+G+ H+ +++ L LNL
Sbjct: 205 LFLEQLTLQDCQKLTDLSLKHVSKGLANLKVLNLSFCGG-ISDSGMIHLSNMTHLWSLNL 263
Query: 428 SQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 484
N++D + L G L L+VS +I L ++ + L L+SL+L SC ++ +
Sbjct: 264 RSCDNISDTGIMHLAMGSLQLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDD 323
Query: 485 DIKRL 489
I R+
Sbjct: 324 GINRM 328
>gi|413949465|gb|AFW82114.1| hypothetical protein ZEAMMB73_510951 [Zea mays]
Length = 606
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 117/453 (25%), Positives = 196/453 (43%), Gaps = 62/453 (13%)
Query: 15 VYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSG 73
V+ R + EV L F VN +W+ + S L + L+ ++ +
Sbjct: 69 VFGRSVEEVDLSGFL-------------SVNSEWLAYLGS-FRYLRVLKLADCKNINNDA 114
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
+ L + L+ LD + C +ISD G++H+ + +L L +T G+ + L NL
Sbjct: 115 VWSLSGMNTLKELDLSRCKKISDAGIKHIVTIESLEKLHLSETE-LTDNGVMLISSLTNL 173
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
LDL L +L+ L KLE L+I W + T+ L L SL ++ ++V
Sbjct: 174 SFLDLGGILMTDKTLQSLQVLTKLEHLDI-WGSETTNEGASALKSFARLLSLNLALTRVN 232
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAAC-------------LDSLSALG------------ 228
I + LN+ C + + C + S + G
Sbjct: 233 HLSIP-----PTTSYLNMSNCEIHSICDVDSEVPVPLENFIVSAATFGNIDKVFSSIQAS 287
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL-TNLESLNLDSCG 287
SL +L+L+ C+LS+ K+ +L+ L+L +N ITD + H+ + TNL+ L+L + G
Sbjct: 288 SLIHLDLSSCKLSN--LSFLEKMKNLEHLDLSYNIITDGAIEHIAKIGTNLQYLSLKNTG 345
Query: 288 IGDEGLVNLTG-LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG------- 339
I + L L G + NL L L++T++ S L ++ + L +I+LS T I
Sbjct: 346 ITSQALCILAGTVPNLTSLSLANTKIDDSALAYIGMIPLLRTIDLSQTSIKGFIHTEVNS 405
Query: 340 ----SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
S+ L L+SLNL+ ++ + L S L +L L ++D L
Sbjct: 406 EKLLSMSAFEHLKYLESLNLEDTPLSAEVIPPLASFATLKYLYLKSDFLSDPALHALSAA 465
Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
NL L G L+ G+ +L +L+LS
Sbjct: 466 SNLIHLGFRGNILSSFGLLQFVPPVTLCVLDLS 498
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 90/363 (24%), Positives = 164/363 (45%), Gaps = 32/363 (8%)
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPL 176
++ ++ + L L L C I+ V +L G+ L+ L++ C I+D+ +K +
Sbjct: 84 SVNSEWLAYLGSFRYLRVLKLADCKNINNDAVWSLSGMNTLKELDLSRCKKISDAGIKHI 143
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ +L+ L +S +++TD+G+ + L L+ L+L G +T L SL L L +L++
Sbjct: 144 VTIESLEKLHLSETELTDNGVMLISSLTNLSFLDLGGILMTDKTLQSLQVLTKLEHLDIW 203
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS-CGIGDEGLVN 295
+ +++G L LNL + + N+ + + S C + E V
Sbjct: 204 GSETTNEGASALKSFARLLSLNLALTRVNHLSIPPTTSYLNMSNCEIHSICDVDSEVPVP 263
Query: 296 LTGLC-------------------NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
L +L L+LS ++ S L L + NLE ++LS+ I
Sbjct: 264 LENFIVSAATFGNIDKVFSSIQASSLIHLDLSSCKL--SNLSFLEKMKNLEHLDLSYNII 321
Query: 337 SDGSLRKLAGL-SSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRN 394
+DG++ +A + ++L+ L+L IT L L ++ LT L L +I DS AY+
Sbjct: 322 TDGAIEHIAKIGTNLQYLSLKNTGITSQALCILAGTVPNLTSLSLANTKIDDSALAYIGM 381
Query: 395 FKNLRSLE-----ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL--ELISGLTGL 447
LR+++ I G T+ + + +S+ L ++ NL D L E+I L
Sbjct: 382 IPLLRTIDLSQTSIKGFIHTEVNSEKLLSMSAFEHLKYLESLNLEDTPLSAEVIPPLASF 441
Query: 448 VSL 450
+L
Sbjct: 442 ATL 444
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 99/176 (56%), Gaps = 8/176 (4%)
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGL 317
GF + E L +L L L L C I ++ + +L+G+ LK L+LS ++ +G+
Sbjct: 81 GFLSVNSEWLAYLGSFRYLRVLKLADCKNINNDAVWSLSGMNTLKELDLSRCKKISDAGI 140
Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
+H+ + +LE ++LS T ++D + ++ L++L L+L +TD L +L LT L HL
Sbjct: 141 KHIVTIESLEKLHLSETELTDNGVMLISSLTNLSFLDLGGILMTDKTLQSLQVLTKLEHL 200
Query: 378 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
D++G+ T+ GA+ L++F L SL + LT V H+ + + LN+S NC +
Sbjct: 201 DIWGSETTNEGASALKSFARLLSLNL---ALTR--VNHLSIPPTTSYLNMS-NCEI 250
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 26/169 (15%)
Query: 325 NLESINLS-FTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGA 382
++E ++LS F ++ L L L+ L L D + I + + +L+ + L LDL
Sbjct: 73 SVEEVDLSGFLSVNSEWLAYLGSFRYLRVLKLADCKNINNDAVWSLSGMNTLKELDLSRC 132
Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
+ ++DAG+KHI + SL L+LS+ LTD + LIS
Sbjct: 133 K-----------------------KISDAGIKHIVTIESLEKLHLSET-ELTDNGVMLIS 168
Query: 443 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 491
LT L L++ +T L+ L+ L L L + + T L+S
Sbjct: 169 SLTNLSFLDLGGILMTDKTLQSLQVLTKLEHLDIWGSETTNEGASALKS 217
>gi|326679785|ref|XP_002660968.2| PREDICTED: hypothetical protein LOC100332407 [Danio rerio]
Length = 537
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 111/401 (27%), Positives = 192/401 (47%), Gaps = 23/401 (5%)
Query: 5 DISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIAS----QGSSLL 60
++++ + + + R L +LE F C LQ L YP ++ + + + + S L
Sbjct: 111 ELAELLLSHMARERLLRPRTLELFFGCPLQKFVLNCYPYTTNELLRQLRAFTCLKHLSFL 170
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+ L +TD+GL L + S LQ L+ + C +++D L+H+ GL +LT L+ + ++
Sbjct: 171 NSPL----ITDAGLSVLSNLSKLQHLNLSSCSKLTDSCLQHITGLRSLTFLALDQTK-VS 225
Query: 121 AQGMKAF--AGLINLVKLDLERCTRIHGGLVNLKG-LMKLESLNIKWCNCITDSDMKPLS 177
G+ + +G L +L L + L L + +L L+IK SD+ L+
Sbjct: 226 DAGLLLYLQSGSSALCQLSLNQTAITESTLRVLPASVPQLRMLSIKHTKV---SDVSALA 282
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN- 236
L NL++L + + V ++ + L L+ L+L G PV A +L + L L
Sbjct: 283 ELKNLQTLHLDGTGVQENSLQCLASHPSLSALSLAGIPV-ADGNHTLEIIAGLRLTQLTL 341
Query: 237 --RCQLSDDGCEKFSK-IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
R ++D G S+ L++ + ++TD + L +T L+ L+L + + D GL
Sbjct: 342 PGRHSVTDSGLSFLSRQTLLLELDLTDYTQLTDHGITQLSSMTRLKKLSLSNTQVSDSGL 401
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRK-LAGLSSLK 351
L L L+ L L T V S G+ L + L +L+ + L+ T + D +R+ L L
Sbjct: 402 QGLIRLKELQELCLDRTAVTSRGVAALITHLPHLQVMGLASTQVGDTVIRRGLVHCPQLL 461
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
LNL +ITD GL L + L+ ++L G +T G A L
Sbjct: 462 KLNLSRTRITDQGLKFLCRMQ-LSQVNLDGTGVTLVGIANL 501
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 100/325 (30%), Positives = 159/325 (48%), Gaps = 29/325 (8%)
Query: 195 SGIAYLKGLQKLTLLNLEGCPV-----------TAACLDSLSALGSLFYLN-LNRCQLSD 242
S +A + L+ TL GCP+ T L L A L +L+ LN ++D
Sbjct: 118 SHMARERLLRPRTLELFFGCPLQKFVLNCYPYTTNELLRQLRAFTCLKHLSFLNSPLITD 177
Query: 243 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV-----NL 296
G S + L+ LNL +++TD CL H+ GL +L L LD + D GL+
Sbjct: 178 AGLSVLSNLSKLQHLNLSSCSKLTDSCLQHITGLRSLTFLALDQTKVSDAGLLLYLQSGS 237
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
+ LC L L+ T + S LR L + L +++ T +SD S LA L +L++L+L
Sbjct: 238 SALCQL---SLNQTAITESTLRVLPASVPQLRMLSIKHTKVSDVS--ALAELKNLQTLHL 292
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG---LTDAG 412
D + + L L S L+ L L G + D G L LR ++ G +TD+G
Sbjct: 293 DGTGVQENSLQCLASHPSLSALSLAGIPVAD-GNHTLEIIAGLRLTQLTLPGRHSVTDSG 351
Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 472
+ + + L L+L+ LTD + +S +T L L++SN++++ +GL+ L LK L+
Sbjct: 352 LSFLSRQTLLLELDLTDYTQLTDHGITQLSSMTRLKKLSLSNTQVSDSGLQGLIRLKELQ 411
Query: 473 SLTLESCKVTANDIKRLQSRDLPNL 497
L L+ VT+ + L + LP+L
Sbjct: 412 ELCLDRTAVTSRGVAALITH-LPHL 435
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 106/373 (28%), Positives = 172/373 (46%), Gaps = 53/373 (14%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
++AF L +L L+ T GL L L KL+ LN+ C+ +TDS ++ ++GL +L
Sbjct: 158 LRAFTCLKHLSFLNSPLIT--DAGLSVLSNLSKLQHLNLSSCSKLTDSCLQHITGLRSLT 215
Query: 184 SLQISCSKVTDSG-IAYLK-GLQKLTLLNLEGCPVTAACLDSLSA-LGSLFYLNLNRCQL 240
L + +KV+D+G + YL+ G L L+L +T + L L A + L L++ ++
Sbjct: 216 FLALDQTKVSDAGLLLYLQSGSSALCQLSLNQTAITESTLRVLPASVPQLRMLSIKHTKV 275
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
SD +++ +L+ L+L + + L L +L +L+L + D G L +
Sbjct: 276 SD--VSALAELKNLQTLHLDGTGVQENSLQCLASHPSLSALSLAGIPVAD-GNHTLEIIA 332
Query: 301 NLKCLELS----------------------------DTQVGSSGLRHLSGLTNLESINLS 332
L+ +L+ TQ+ G+ LS +T L+ ++LS
Sbjct: 333 GLRLTQLTLPGRHSVTDSGLSFLSRQTLLLELDLTDYTQLTDHGITQLSSMTRLKKLSLS 392
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
T +SD L+ L L L+ L LD +T G+AAL +T L HL + G T G +
Sbjct: 393 NTQVSDSGLQGLIRLKELQELCLDRTAVTSRGVAAL--ITHLPHLQVMGLASTQVGDTVI 450
Query: 393 R----NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ-NCNLTDKTL----ELISG 443
R + L L + +TD G+K L + LSQ N + T TL LIS
Sbjct: 451 RRGLVHCPQLLKLNLSRTRITDQGLKF------LCRMQLSQVNLDGTGVTLVGIANLISA 504
Query: 444 LTGLVSLNVSNSR 456
L S+ S++R
Sbjct: 505 CPHLSSVRASHTR 517
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 94/337 (27%), Positives = 162/337 (48%), Gaps = 16/337 (4%)
Query: 166 NCI---TDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGC-PVTAAC 220
NC T+ ++ L T LK L S +TD+G++ L L KL LNL C +T +C
Sbjct: 145 NCYPYTTNELLRQLRAFTCLKHLSFLNSPLITDAGLSVLSNLSKLQHLNLSSCSKLTDSC 204
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE--ITDECLVHLKG-LTN 277
L ++ L SL +L L++ ++SD G + + GS + L N+ IT+ L L +
Sbjct: 205 LQHITGLRSLTFLALDQTKVSDAGLLLYLQSGSSALCQLSLNQTAITESTLRVLPASVPQ 264
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L L++ + D + L L NL+ L L T V + L+ L+ +L +++L+ ++
Sbjct: 265 LRMLSIKHTKVSD--VSALAELKNLQTLHLDGTGVQENSLQCLASHPSLSALSLAGIPVA 322
Query: 338 DG--SLRKLAGLSSLKSLNLDARQ-ITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLR 393
DG +L +AGL L L L R +TD+GL+ L+ L ++TD G L
Sbjct: 323 DGNHTLEIIAGLR-LTQLTLPGRHSVTDSGLSFLSRQTLLLELDLTDYTQLTDHGITQLS 381
Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
+ L+ L + ++D+G++ + L L L L + + LI+ L L + ++
Sbjct: 382 SMTRLKKLSLSNTQVSDSGLQGLIRLKELQELCLDRTAVTSRGVAALITHLPHLQVMGLA 441
Query: 454 NSRITSAGLRH-LKPLKNLRSLTLESCKVTANDIKRL 489
++++ +R L L L L ++T +K L
Sbjct: 442 STQVGDTVIRRGLVHCPQLLKLNLSRTRITDQGLKFL 478
>gi|290983152|ref|XP_002674293.1| predicted protein [Naegleria gruberi]
gi|284087882|gb|EFC41549.1| predicted protein [Naegleria gruberi]
Length = 338
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 118/223 (52%), Gaps = 2/223 (0%)
Query: 160 LNIKWCNCITDSDMKP--LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+N+K+ + DS KP ++ + L SL IS +++ D G+ ++ +++L L + +
Sbjct: 112 VNVKFSKRLFDSIEKPTFITEMKQLTSLDISNNRIGDEGVKFISEMKQLISLGIYNNGIG 171
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
+ S+ + L L + Q+ D+G + S++ L L++ N+ DE + + +
Sbjct: 172 DEGVKSIIEMKRLTSLGIGGNQIGDEGAKSISEMKQLTSLDINNNQTGDEGVKFICEMKQ 231
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L SL + + IGDEG +++ + L L +S+ ++G G +S L L S+++ + I
Sbjct: 232 LTSLTIYNNRIGDEGAKSISEMKQLTSLNISENRIGDEGAIFISELKQLTSLDICYNRIG 291
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
D + + + LKSL++ QI D G+ ++ +T LT LD+F
Sbjct: 292 DKEAKFICEMKQLKSLDIGGNQIGDEGVKFISEMTRLTSLDIF 334
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 108/204 (52%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
++ + L L+++ ++ D+G + S++ L L + N I DE + + + L SL +
Sbjct: 130 ITEMKQLTSLDISNNRIGDEGVKFISEMKQLISLGIYNNGIGDEGVKSIIEMKRLTSLGI 189
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
IGDEG +++ + L L++++ Q G G++ + + L S+ + I D +
Sbjct: 190 GGNQIGDEGAKSISEMKQLTSLDINNNQTGDEGVKFICEMKQLTSLTIYNNRIGDEGAKS 249
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
++ + L SLN+ +I D G ++ L LT LD+ RI D A ++ K L+SL+I
Sbjct: 250 ISEMKQLTSLNISENRIGDEGAIFISELKQLTSLDICYNRIGDKEAKFICEMKQLKSLDI 309
Query: 404 CGGGLTDAGVKHIKDLSSLTLLNL 427
G + D GVK I +++ LT L++
Sbjct: 310 GGNQIGDEGVKFISEMTRLTSLDI 333
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 110/213 (51%), Gaps = 4/213 (1%)
Query: 243 DGCEKFSKIGSLKVL---NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
D EK + I +K L ++ N I DE + + + L SL + + GIGDEG+ ++ +
Sbjct: 122 DSIEKPTFITEMKQLTSLDISNNRIGDEGVKFISEMKQLISLGIYNNGIGDEGVKSIIEM 181
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
L L + Q+G G + +S + L S++++ D ++ + + L SL + +
Sbjct: 182 KRLTSLGIGGNQIGDEGAKSISEMKQLTSLDINNNQTGDEGVKFICEMKQLTSLTIYNNR 241
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
I D G +++ + LT L++ RI D GA ++ K L SL+IC + D K I ++
Sbjct: 242 IGDEGAKSISEMKQLTSLNISENRIGDEGAIFISELKQLTSLDICYNRIGDKEAKFICEM 301
Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
L L++ N + D+ ++ IS +T L SL++
Sbjct: 302 KQLKSLDIGGN-QIGDEGVKFISEMTRLTSLDI 333
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 91/179 (50%), Gaps = 5/179 (2%)
Query: 34 QDLCLGQYP-GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
Q + LG Y G+ D+ + I + L S+ + G+ + D G + + L SLD N
Sbjct: 159 QLISLGIYNNGIGDEGVKSII-EMKRLTSLGIGGNQIGDEGAKSISEMKQLTSLDINNN- 216
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
Q D G++ + + LTSL+ NN I +G K+ + + L L++ G + +
Sbjct: 217 QTGDEGVKFICEMKQLTSLTI-YNNRIGDEGAKSISEMKQLTSLNISENRIGDEGAIFIS 275
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
L +L SL+I + N I D + K + + LKSL I +++ D G+ ++ + +LT L++
Sbjct: 276 ELKQLTSLDICY-NRIGDKEAKFICEMKQLKSLDIGGNQIGDEGVKFISEMTRLTSLDI 333
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 107/230 (46%), Gaps = 27/230 (11%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
++ L S+D+S + + D G+ + + L SL + I D G++ + + LTSL
Sbjct: 131 TEMKQLTSLDISNNRIGDEGVKFISEMKQLISLGI-YNNGIGDEGVKSIIEMKRLTSLGI 189
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K+ + + L LD+ G+ + + +L SL I + N I D
Sbjct: 190 -GGNQIGDEGAKSISEMKQLTSLDINNNQTGDEGVKFICEMKQLTSLTI-YNNRIGDEGA 247
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL IS +++ D G ++ L++LT L++ C + + + F
Sbjct: 248 KSISEMKQLTSLNISENRIGDEGAIFISELKQLTSLDI--------CYNRIGDKEAKFI- 298
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
CE + LK L++G N+I DE + + +T L SL++
Sbjct: 299 -----------CE----MKQLKSLDIGGNQIGDEGVKFISEMTRLTSLDI 333
>gi|357134265|ref|XP_003568738.1| PREDICTED: uncharacterized protein LOC100844673 [Brachypodium
distachyon]
Length = 547
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 100/388 (25%), Positives = 173/388 (44%), Gaps = 36/388 (9%)
Query: 58 SLLSVDLSGSDVTDS-GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S+ +DLSG+ D+ L +L L+ L C +++ + L L +
Sbjct: 73 SVEEIDLSGNIAVDAEWLAYLGSFRYLRVLKLADCKNVNNSAVWALSDLGGIH------- 125
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T + +++ L L LD+ + G LK +L LN+ W + + + PL
Sbjct: 126 --MTDKTLRSLQVLTRLEHLDIWGSEITNEGASVLKAFTRLSFLNVSWTHV---TRLPPL 180
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-CLDSLSAL--GSLFYL 233
L +L + + D L+K T+ C + + S++ SL YL
Sbjct: 181 PNLQHLNMSNCTIHSIRDGDSEVNVPLEKFTV-----CAASFGNIFEVFSSIQGSSLLYL 235
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL-TNLESLNLDSCGIGDEG 292
+++ C LS+ F K+ ++ L+L F+ ITD + H+ + NL L+L + GI +
Sbjct: 236 DMSGCSLSN--LHIFEKMKHIEHLDLSFSRITDAAIQHVANIGMNLRHLSLKNTGITSQA 293
Query: 293 LVNLTG-LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-----------GS 340
L G + NL L L+ T++ S L ++S + +L I+LS T I S
Sbjct: 294 PCILAGTVPNLSSLSLAYTEIDDSALAYISMMPSLRVIDLSHTSIKGFTCVEVNSEKIPS 353
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
+ L L L+SLNL+ ++D + L S + +L L ++D L + NL
Sbjct: 354 MPPLEHLMYLESLNLEDTALSDEVIPPLASFRAIKYLYLKSDFLSDPALHALSSASNLTH 413
Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLS 428
L CG L+D+G+ + L +L+LS
Sbjct: 414 LGFCGNILSDSGLLQFVPPAKLRVLDLS 441
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 153/343 (44%), Gaps = 44/343 (12%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+TD ++ L LT L+ L I S++T+ G + LK +L+ LN+ VT L L
Sbjct: 126 MTDKTLRSLQVLTRLEHLDIWGSEITNEGASVLKAFTRLSFLNVSWTHVT-----RLPPL 180
Query: 228 GSLFYLNLNRCQLSD--DG-------CEKFSK-IGSLKVLNLGFNEITDECLVHL----- 272
+L +LN++ C + DG EKF+ S + F+ I L++L
Sbjct: 181 PNLQHLNMSNCTIHSIRDGDSEVNVPLEKFTVCAASFGNIFEVFSSIQGSSLLYLDMSGC 240
Query: 273 --------KGLTNLESLNLDSCGIGDEGLVNLTGL-CNLKCLELSDTQVGSSGLRHLSG- 322
+ + ++E L+L I D + ++ + NL+ L L +T + S L+G
Sbjct: 241 SLSNLHIFEKMKHIEHLDLSFSRITDAAIQHVANIGMNLRHLSLKNTGITSQAPCILAGT 300
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
+ NL S++L++T I D +L ++ + SL+ ++L TS+ G T +++
Sbjct: 301 VPNLSSLSLAYTEIDDSALAYISMMPSLRVIDLSH-----------TSIKGFTCVEVNSE 349
Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
+I L + L SL + L+D + + ++ L L + L+D L +S
Sbjct: 350 KIPSMPP--LEHLMYLESLNLEDTALSDEVIPPLASFRAIKYLYLKSDF-LSDPALHALS 406
Query: 443 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 485
+ L L + ++ +GL P LR L L C + D
Sbjct: 407 SASNLTHLGFCGNILSDSGLLQFVPPAKLRVLDLSGCWILTGD 449
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 98/442 (22%), Positives = 179/442 (40%), Gaps = 81/442 (18%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIAS------- 54
LP ++ + L R L+ LE FR +++++ L V+ +W+ + S
Sbjct: 44 LPGQLADALLQRLAARRLLSPSLLEVFRH-SVEEIDLSGNIAVDAEWLAYLGSFRYLRVL 102
Query: 55 --------QGSSLLSV-DLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL 105
S++ ++ DL G +TD L L+ + L+ LD + +I++ G L+
Sbjct: 103 KLADCKNVNNSAVWALSDLGGIHMTDKTLRSLQVLTRLEHLDI-WGSEITNEGASVLKAF 161
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-----GLVNLKGLMKLESL 160
+ L+ L+ ++ + L NL L++ CT IH VN+ LE
Sbjct: 162 TRLSFLN------VSWTHVTRLPPLPNLQHLNMSNCT-IHSIRDGDSEVNVP----LEKF 210
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+ C + + S + L + S + S + + ++ + L+L +T A
Sbjct: 211 TV--CAASFGNIFEVFSSIQGSSLLYLDMSGCSLSNLHIFEKMKHIEHLDLSFSRITDAA 268
Query: 221 LDSLSALGSLFYLNLNRCQLSDDG------CEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
+ ++ +G +NL L + G C + +L L+L + EI D L ++
Sbjct: 269 IQHVANIG----MNLRHLSLKNTGITSQAPCILAGTVPNLSSLSLAYTEIDDSALAYISM 324
Query: 275 LTNLESLNLDSCGI--------GDEGLVNLTGLCNLKCLE---LSDTQVGSSGLRHLSGL 323
+ +L ++L I E + ++ L +L LE L D
Sbjct: 325 MPSLRVIDLSHTSIKGFTCVEVNSEKIPSMPPLEHLMYLESLNLED-------------- 370
Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
T +SD + LA ++K L L + ++D L AL+S + LTHL G
Sbjct: 371 ----------TALSDEVIPPLASFRAIKYLYLKSDFLSDPALHALSSASNLTHLGFCGNI 420
Query: 384 ITDSGAAYLRNFKNLRSLEICG 405
++DSG LR L++ G
Sbjct: 421 LSDSGLLQFVPPAKLRVLDLSG 442
>gi|320165720|gb|EFW42619.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 664
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 116/394 (29%), Positives = 165/394 (41%), Gaps = 11/394 (2%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVN 150
QI+ GL+ L L + NN I + AF+GL LV+L L + T I
Sbjct: 166 QITTVPSSAFTGLTAL-QLLYLYNNQIATVAIDAFSGLTALVQLYLYNNQITSISANA-- 222
Query: 151 LKGLMKLESL--NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
GL KL +L N W + I S +GLT L L + +++T + GL L
Sbjct: 223 FSGLSKLNTLQLNNNWLSAIPSSAF---TGLTALTQLLLYNNQITTVPSSAFTGLTALQF 279
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L L + +++ S L +L L L+ Q++ FS + L L+L N ++
Sbjct: 280 LYLYNNQIATVAINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNNWLSAIP 339
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
GLT L L LD+ I +GL L L L + Q+ + SGLT L
Sbjct: 340 SSAFTGLTALTQLRLDTNQITTVPANAFSGLTALIYLYLYNNQITTVPANAFSGLTALVQ 399
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
+ L I+ L GLS+L L L QIT + LT LT L LF IT
Sbjct: 400 LYLYNNQITTIPSSALTGLSALTQLYLYNNQITSVPANGFSGLTALTDLRLFNNTITSIL 459
Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
A L L++ LT L++LT L L N L+ +GLT L+
Sbjct: 460 ANAFTGLTKLTYLDLSLNQLTSIPAGAFSGLTALTQLLLYNNW-LSAVPSSAFTGLTALL 518
Query: 449 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
L + N++IT+ L L L L ++T
Sbjct: 519 YLYLYNNQITTVAANAFTGLTALVQLQLYGNQIT 552
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 128/475 (26%), Positives = 191/475 (40%), Gaps = 61/475 (12%)
Query: 15 VYSRCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSG 73
+Y+ +T +S AF + L L L N+ W+ I S +G
Sbjct: 210 LYNNQITSISANAFSGLSKLNTLQL------NNNWLSAIPSSA-------FTGLTALTQL 256
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
L++ + + S F GL L+ L + NN I + AF+GL L
Sbjct: 257 LLYNNQITTVPSSAFT--------GLTALQFL-------YLYNNQIATVAINAFSGLTAL 301
Query: 134 V--KLDLERCTRIHGGLVNLKGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISC 189
V +LD + T + GL KL +L++ W + I S +GLT L L++
Sbjct: 302 VQLRLDTNQITTVPANA--FSGLSKLNTLHLYNNWLSAIPSSAF---TGLTALTQLRLDT 356
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+++T GL L L L +T ++ S L +L L L Q++ +
Sbjct: 357 NQITTVPANAFSGLTALIYLYLYNNQITTVPANAFSGLTALVQLYLYNNQITTIPSSALT 416
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
+ +L L L N+IT GLT L L L + I TGL L L+LS
Sbjct: 417 GLSALTQLYLYNNQITSVPANGFSGLTALTDLRLFNNTITSILANAFTGLTKLTYLDLSL 476
Query: 310 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 369
Q+ S SGLT L + L +S GL++L L L QIT A T
Sbjct: 477 NQLTSIPAGAFSGLTALTQLLLYNNWLSAVPSSAFTGLTALLYLYLYNNQITTVAANAFT 536
Query: 370 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 429
LT L L L+G +IT A+ +L L + +T V L+ L+LL LS
Sbjct: 537 GLTALVQLQLYGNQITTISASAFAGMSSLVQLYLYSNRITAIFVNAFTGLTHLSLLELSN 596
Query: 430 N------------------CNLTDKTLELI-----SGLTGLVSLNVSNSRITSAG 461
N +L + +L + +GLT L +L + N++ITS
Sbjct: 597 NQITSLPANAFSGLTAMTQLSLYNNSLSAVPSSAFTGLTALQALLLYNNQITSVA 651
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 108/371 (29%), Positives = 153/371 (41%), Gaps = 34/371 (9%)
Query: 117 NAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNI--KWCNCITDSD 172
N IT AF+GL L LDL + T + GL KL +L + W + I S
Sbjct: 93 NPITNIASSAFSGLSVLNTLDLTNNQITTVPANA--FSGLSKLNTLYLYNNWLSAIPSSA 150
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+GLT L L + +++T + GL L LL L + +D+ S L +L
Sbjct: 151 F---TGLTALTQLLLHNNQITTVPSSAFTGLTALQLLYLYNNQIATVAIDAFSGLTALVQ 207
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L L Q++ FS + L L L N ++ GLT L L L + I
Sbjct: 208 LYLYNNQITSISANAFSGLSKLNTLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVP 267
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-----------SFTGISD-GS 340
TGL L+ L L + Q+ + + SGLT L + L +F+G+S +
Sbjct: 268 SSAFTGLTALQFLYLYNNQIATVAINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNT 327
Query: 341 LR------------KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
L GL++L L LD QIT A + LT L +L L+ +IT
Sbjct: 328 LHLYNNWLSAIPSSAFTGLTALTQLRLDTNQITTVPANAFSGLTALIYLYLYNNQITTVP 387
Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
A L L + +T + LS+LT L L N +T SGLT L
Sbjct: 388 ANAFSGLTALVQLYLYNNQITTIPSSALTGLSALTQLYLYNN-QITSVPANGFSGLTALT 446
Query: 449 SLNVSNSRITS 459
L + N+ ITS
Sbjct: 447 DLRLFNNTITS 457
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 114/409 (27%), Positives = 168/409 (41%), Gaps = 33/409 (8%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
GL+ LT L NN IT AF GL L L L + GL L L
Sbjct: 247 FTGLTALTQL-LLYNNQITTVPSSAFTGLTALQFLYLYNNQIATVAINAFSGLTALVQLR 305
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+ N IT SGL+ L +L + + ++ + GL LT L L+ +T
Sbjct: 306 LD-TNQITTVPANAFSGLSKLNTLHLYNNWLSAIPSSAFTGLTALTQLRLDTNQITTVPA 364
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT---DECLVHLKGLTNL 278
++ S L +L YL L Q++ FS + +L L L N+IT L L LT L
Sbjct: 365 NAFSGLTALIYLYLYNNQITTVPANAFSGLTALVQLYLYNNQITTIPSSALTGLSALTQL 424
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTG 335
N + G LT L +L+ + T + ++ +GLT L ++LS T
Sbjct: 425 YLYNNQITSVPANGFSGLTALTDLRLFNNTITSILANAF---TGLTKLTYLDLSLNQLTS 481
Query: 336 ISDGSLRKLAGLSSLKSLN--LDA-------------------RQITDTGLAALTSLTGL 374
I G+ L L+ L N L A QIT A T LT L
Sbjct: 482 IPAGAFSGLTALTQLLLYNNWLSAVPSSAFTGLTALLYLYLYNNQITTVAANAFTGLTAL 541
Query: 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
L L+G +IT A+ +L L + +T V L+ L+LL LS N +T
Sbjct: 542 VQLQLYGNQITTISASAFAGMSSLVQLYLYSNRITAIFVNAFTGLTHLSLLELSNN-QIT 600
Query: 435 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 483
SGLT + L++ N+ +++ L L++L L + ++T+
Sbjct: 601 SLPANAFSGLTAMTQLSLYNNSLSAVPSSAFTGLTALQALLLYNNQITS 649
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 103/358 (28%), Positives = 151/358 (42%), Gaps = 7/358 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL--VKLDLERCTRIHGGLVN 150
QI+ GLS L +L NN ++A AF GL L ++LD + T +
Sbjct: 310 QITTVPANAFSGLSKLNTLHLY-NNWLSAIPSSAFTGLTALTQLRLDTNQITTVPANA-- 366
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
GL L L + + N IT SGLT L L + +++T + L GL LT L
Sbjct: 367 FSGLTALIYLYL-YNNQITTVPANAFSGLTALVQLYLYNNQITTIPSSALTGLSALTQLY 425
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L +T+ + S L +L L L ++ F+ + L L+L N++T
Sbjct: 426 LYNNQITSVPANGFSGLTALTDLRLFNNTITSILANAFTGLTKLTYLDLSLNQLTSIPAG 485
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
GLT L L L + + TGL L L L + Q+ + +GLT L +
Sbjct: 486 AFSGLTALTQLLLYNNWLSAVPSSAFTGLTALLYLYLYNNQITTVAANAFTGLTALVQLQ 545
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
L I+ S AG+SSL L L + +IT + A T LT L+ L+L +IT A
Sbjct: 546 LYGNQITTISASAFAGMSSLVQLYLYSNRITAIFVNAFTGLTHLSLLELSNNQITSLPAN 605
Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
+ L + L+ L++L L L N +T +GLT LV
Sbjct: 606 AFSGLTAMTQLSLYNNSLSAVPSSAFTGLTALQAL-LLYNNQITSVAANAFTGLTALV 662
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 99/334 (29%), Positives = 139/334 (41%), Gaps = 34/334 (10%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
S + S L + L+ LD N QI+ GL+ L L + NN IT A
Sbjct: 336 SAIPSSAFTGLTALTQLR-LDTN---QITTVPANAFSGLTALIYL-YLYNNQITTVPANA 390
Query: 127 FAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
F+GL LV+L L + T I L GL L L + + N IT SGLT L
Sbjct: 391 FSGLTALVQLYLYNNQITTIPSSA--LTGLSALTQLYL-YNNQITSVPANGFSGLTALTD 447
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNL---EGCPVTAACLDSLSALGSLFYLN------- 234
L++ + +T GL KLT L+L + + A L+AL L N
Sbjct: 448 LRLFNNTITSILANAFTGLTKLTYLDLSLNQLTSIPAGAFSGLTALTQLLLYNNWLSAVP 507
Query: 235 --------------LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
L Q++ F+ + +L L L N+IT G+++L
Sbjct: 508 SSAFTGLTALLYLYLYNNQITTVAANAFTGLTALVQLQLYGNQITTISASAFAGMSSLVQ 567
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
L L S I + TGL +L LELS+ Q+ S SGLT + ++L +S
Sbjct: 568 LYLYSNRITAIFVNAFTGLTHLSLLELSNNQITSLPANAFSGLTAMTQLSLYNNSLSAVP 627
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
GL++L++L L QIT A T LT L
Sbjct: 628 SSAFTGLTALQALLLYNNQITSVAANAFTGLTAL 661
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 118/280 (42%), Gaps = 4/280 (1%)
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
P+T + S L L L+L Q++ FS + L L L N ++ G
Sbjct: 94 PITNIASSAFSGLSVLNTLDLTNNQITTVPANAFSGLSKLNTLYLYNNWLSAIPSSAFTG 153
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
LT L L L + I TGL L+ L L + Q+ + + SGLT L + L
Sbjct: 154 LTALTQLLLHNNQITTVPSSAFTGLTALQLLYLYNNQIATVAIDAFSGLTALVQLYLYNN 213
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
I+ S +GLS L +L L+ ++ +A T LT LT L L+ +IT ++
Sbjct: 214 QITSISANAFSGLSKLNTLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFTG 273
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
L+ L + + + L++L L L N +T SGL+ L +L++ N
Sbjct: 274 LTALQFLYLYNNQIATVAINAFSGLTALVQLRLDTN-QITTVPANAFSGLSKLNTLHLYN 332
Query: 455 ---SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 491
S I S+ L L LR T + V AN L +
Sbjct: 333 NWLSAIPSSAFTGLTALTQLRLDTNQITTVPANAFSGLTA 372
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 126/316 (39%), Gaps = 25/316 (7%)
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
+T+ + GL L L+L +T ++ S L L L L LS F+
Sbjct: 94 PITNIASSAFSGLSVLNTLDLTNNQITTVPANAFSGLSKLNTLYLYNNWLSAIPSSAFTG 153
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+ +L L L N+IT GLT L+ L L + I + +GL L L L +
Sbjct: 154 LTALTQLLLHNNQITTVPSSAFTGLTALQLLYLYNNQIATVAIDAFSGLTALVQLYLYNN 213
Query: 311 QVGSSGLRHLSGLTNLESINL-----------SFTG-------------ISDGSLRKLAG 346
Q+ S SGL+ L ++ L +FTG I+ G
Sbjct: 214 QITSISANAFSGLSKLNTLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFTG 273
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
L++L+ L L QI + A + LT L L L +IT A L +L +
Sbjct: 274 LTALQFLYLYNNQIATVAINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNN 333
Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 466
L+ L++LT L L N +T SGLT L+ L + N++IT+
Sbjct: 334 WLSAIPSSAFTGLTALTQLRLDTN-QITTVPANAFSGLTALIYLYLYNNQITTVPANAFS 392
Query: 467 PLKNLRSLTLESCKVT 482
L L L L + ++T
Sbjct: 393 GLTALVQLYLYNNQIT 408
>gi|17548893|ref|NP_522233.1| GALA protein [Ralstonia solanacearum GMI1000]
Length = 981
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 118/376 (31%), Positives = 174/376 (46%), Gaps = 7/376 (1%)
Query: 58 SLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
S+ +DLSG S V+++GL +L L SLD + I + G + L ++LTSL+
Sbjct: 578 SVRHLDLSGCTGSAVSEAGLAYLARLP-LASLDLSDT-GIGNRGAQALAASASLTSLNLS 635
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N I G +A L LD+ + G L G L SL ++ I D ++
Sbjct: 636 -GNGIGTAGAEALGRNTVLTALDISANPIRNAGAQALAGSRSLTSLELR-DTGIEDGGIE 693
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L+ T L+SL IS + ++D A L + LT L GC +T L+ + SL L
Sbjct: 694 ALAANTVLRSLDISGNDLSDQSAAALAANRTLTSLKANGCGLTNDMAQQLARIRSLRTLE 753
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+ + D G ++ SL+ LNL N IT + L L L+SL++ G GD G +
Sbjct: 754 VGSNSIGDAGVLTIARNASLRSLNLSRNPITPQGLYPLALSRTLKSLDVSRIGCGDRGAL 813
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
L+G L L+L +V S G R L+ L S++L I + R LA L SLN
Sbjct: 814 LLSGNRALTSLKLGFNRVSSEGARRLAANRTLVSLDLRGNTIDVAAARALANAEPLASLN 873
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
+ ++ D AL LT LD+ R++ A L N L SL I + G +
Sbjct: 874 VSDCRLDDAVACALAESRTLTSLDVSWNRLSHRAARALANNPVLASLYISHNDIGPEGAQ 933
Query: 415 HIKDLSSLTLLNLSQN 430
+ D +SLT L+ N
Sbjct: 934 ALADSASLTFLDARAN 949
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 150/337 (44%), Gaps = 54/337 (16%)
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC---QLSDDGCEKFSKI 251
+ + L+ L L+ G P++ A L +L S+ +L+L+ C +S+ G +++
Sbjct: 547 AAFSRLRNYPALESLSFHG-PLSLADLRALPP--SVRHLDLSGCTGSAVSEAGLAYLARL 603
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
L L+L I + L +L SLNL GIG G L L L++S
Sbjct: 604 -PLASLDLSDTGIGNRGAQALAASASLTSLNLSGNGIGTAGAEALGRNTVLTALDISANP 662
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
+ ++G + L+G +L S+ L TGI DG + LA + L+SL++ ++D AAL +
Sbjct: 663 IRNAGAQALAGSRSLTSLELRDTGIEDGGIEALAANTVLRSLDISGNDLSDQSAAALAAN 722
Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
LT L G +T+ A L ++LR+LE+ + DAGV I +SL LNLS+N
Sbjct: 723 RTLTSLKANGCGLTNDMAQQLARIRSLRTLEVGSNSIGDAGVLTIARNASLRSLNLSRNP 782
Query: 432 -----------NLTDKTLE------------LISGLTGLVSLNVSNSRITSAGLRHLKP- 467
+ T K+L+ L+SG L SL + +R++S G R L
Sbjct: 783 ITPQGLYPLALSRTLKSLDVSRIGCGDRGALLLSGNRALTSLKLGFNRVSSEGARRLAAN 842
Query: 468 -----------------------LKNLRSLTLESCKV 481
+ L SL + C++
Sbjct: 843 RTLVSLDLRGNTIDVAAARALANAEPLASLNVSDCRL 879
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 111/235 (47%), Gaps = 7/235 (2%)
Query: 268 CLVHLKGLT-NLESLNLDSC---GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
L L+ L ++ L+L C + + GL L L L L+LSDT +G+ G + L+
Sbjct: 568 SLADLRALPPSVRHLDLSGCTGSAVSEAGLAYLARLP-LASLDLSDTGIGNRGAQALAAS 626
Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
+L S+NLS GI L + L +L++ A I + G AL LT L+L
Sbjct: 627 ASLTSLNLSGNGIGTAGAEALGRNTVLTALDISANPIRNAGAQALAGSRSLTSLELRDTG 686
Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
I D G L LRSL+I G L+D + +LT L + C LT+ + ++
Sbjct: 687 IEDGGIEALAANTVLRSLDISGNDLSDQSAAALAANRTLTSLK-ANGCGLTNDMAQQLAR 745
Query: 444 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ-SRDLPNL 497
+ L +L V ++ I AG+ + +LRSL L +T + L SR L +L
Sbjct: 746 IRSLRTLEVGSNSIGDAGVLTIARNASLRSLNLSRNPITPQGLYPLALSRTLKSL 800
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 137/332 (41%), Gaps = 67/332 (20%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D + LSGL + L+ +LKG TL +L+ P T L
Sbjct: 40 DRRALSGLRDHPHLES----------VHLKG--DFTLADLKALPTT------------LR 75
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
+L+L+ C GS K + +L GL LESLN+ IGD
Sbjct: 76 HLDLSEC------------TGSAKSF---------RAIAYLAGLP-LESLNVAGAEIGDG 113
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
G L +LK L + + +SG R L+ LES++L+ I D + LAG SL+
Sbjct: 114 GARLLAANPSLKSLNAASGGISASGARMLAESPTLESLDLTQNAIGDAGAQALAGSRSLR 173
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDL------------------FGARITDSGAAYLR 393
L + +TD G AL L LDL IT GA L
Sbjct: 174 HLAVRNGLVTDLGTRALALNPALVSLDLGNLVTETGNQVEQDGYDKTANNITAQGAWALA 233
Query: 394 NFKNLRSLEICGGGL-TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
++L+SL + G L D GV+ + +LT LN++ N+T + + ++ L SL+V
Sbjct: 234 QNRSLKSLSVQGNDLCGDDGVRALARNRTLTSLNVAF-TNMTSASAKALADNPVLTSLSV 292
Query: 453 S-NSRITSAGLRHLKPLKNLRSLTLESCKVTA 483
N + AG L ++L SL ++A
Sbjct: 293 RWNYGLDDAGAMELAMSRSLTSLDARDTGMSA 324
>gi|254411888|ref|ZP_05025664.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
gi|196181610|gb|EDX76598.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
Length = 415
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 107/320 (33%), Positives = 170/320 (53%), Gaps = 45/320 (14%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTD--------------------SGIAYLKGLQKLTLLN 210
SD+ PLS LTNL+SL + +++TD + I L L LT L+
Sbjct: 86 SDLSPLSELTNLESLHLDGNQITDICPLTELTNLKYLTLRRNQITDICPLTELTNLTELS 145
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
LEG + A ++SL+ L +L +LNL Q++ +++ +LK L+L N+ITD +
Sbjct: 146 LEGNQI--ADVNSLAELTNLEFLNLENNQIT--TISPLAELQNLKRLHLEDNQITD--IS 199
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
L GL NL L+L+ I D + L+ NLK L L Q+ + LS LTNL+++
Sbjct: 200 SLAGLQNLTWLHLEDNQITD--ISPLSEFTNLKGLFLVLNQI--KDISPLSQLTNLKALE 255
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
L F I D + LA L +L L+L+ QITD ++ L+ LT LT L L +I D +
Sbjct: 256 LKFNQIQD--ISPLAELQNLTWLDLEDNQITD--ISPLSGLTNLTFLSLTYNQIQD--VS 309
Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
L NL+ L++ + D + + +L++L L+L+ N +TD + +SGL L +L
Sbjct: 310 PLSGLTNLKRLQLNFNQIQD--ISPLAELTNLETLSLNGN-QITD--VSPLSGLQNLNAL 364
Query: 451 NVSNSRITS----AGLRHLK 466
+++ ++IT +GL +LK
Sbjct: 365 SLNGNQITDISPLSGLTNLK 384
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 137/282 (48%), Gaps = 49/282 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L + L G+ + D L + +NL+ L+ QI+ + L L NL L +
Sbjct: 139 TNLTELSLEGNQIADVN--SLAELTNLEFLNLENN-QIT--TISPLAELQNLKRLHLE-D 192
Query: 117 NAITAQGMKAFAGLINLVKLDLE--RCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSD 172
N IT + + AGL NL L LE + T I NLKGL + N I D
Sbjct: 193 NQIT--DISSLAGLQNLTWLHLEDNQITDISPLSEFTNLKGLFLV-------LNQI--KD 241
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ PLS LTNLK+L++ +++ D I+ L LQ LT L+LE +T + LS L +L +
Sbjct: 242 ISPLSQLTNLKALELKFNQIQD--ISPLAELQNLTWLDLEDNQITD--ISPLSGLTNLTF 297
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-- 290
L+L Q+ D S + +LK L L FN+I D + L LTNLE+L+L+ I D
Sbjct: 298 LSLTYNQIQD--VSPLSGLTNLKRLQLNFNQIQD--ISPLAELTNLETLSLNGNQITDVS 353
Query: 291 --EGLVNL----------------TGLCNLKCLELSDTQVGS 314
GL NL +GL NLK L L++ + S
Sbjct: 354 PLSGLQNLNALSLNGNQITDISPLSGLTNLKVLHLTENPIFS 395
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 88/171 (51%), Gaps = 13/171 (7%)
Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
ELS + S L LS LTNLES++L I+D + L L++LK L L QITD +
Sbjct: 77 ELSLNRQEISDLSPLSELTNLESLHLDGNQITD--ICPLTELTNLKYLTLRRNQITD--I 132
Query: 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
LT LT LT L L G +I D + L NL L + +T + + +L +L L
Sbjct: 133 CPLTELTNLTELSLEGNQIADVNS--LAELTNLEFLNLENNQIT--TISPLAELQNLKRL 188
Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
+L N +TD + ++GL L L++ +++IT + L NL+ L L
Sbjct: 189 HLEDN-QITD--ISSLAGLQNLTWLHLEDNQIT--DISPLSEFTNLKGLFL 234
>gi|290984031|ref|XP_002674731.1| predicted protein [Naegleria gruberi]
gi|284088323|gb|EFC41987.1| predicted protein [Naegleria gruberi]
Length = 356
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 122/258 (47%), Gaps = 8/258 (3%)
Query: 173 MKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
MK L+ L I C+ + + G Y+ L++LT L + + +S L L
Sbjct: 97 MKSLTEL-------IGCNNNIGNEGAKYISKLKQLTHLYILNNEIDDEGAKYISELNQLV 149
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
L+++ + +G + S++ L L++ N I E H+ + L LN+ + IG E
Sbjct: 150 SLDISYNNIGVEGAKYISELKQLTNLDISVNHIGAEGAQHIAEMNQLTILNISTNNIGYE 209
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
G + L L CL + + + G +++S + L +N+S+ I + ++ L L
Sbjct: 210 GAKYIGKLKQLTCLTIFNNNIDVEGAKYISEMKQLTDLNISYNNIDVEGAKYISELKQLT 269
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
L++ QI G+ + + LT L I D GA Y+ K L +L+I +++
Sbjct: 270 DLDISINQIGAKGVQYIAEMNQLTILSASHNNIGDEGAKYISEMKQLTNLDISNNSISNE 329
Query: 412 GVKHIKDLSSLTLLNLSQ 429
GVK I+++ LT+LN+ Q
Sbjct: 330 GVKCIEEMKHLTVLNIRQ 347
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 123/237 (51%), Gaps = 1/237 (0%)
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
+ ++G + SK+ L L + NEI DE ++ L L SL++ IG EG ++ L
Sbjct: 110 IGNEGAKYISKLKQLTHLYILNNEIDDEGAKYISELNQLVSLDISYNNIGVEGAKYISEL 169
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
L L++S +G+ G +H++ + L +N+S I + + L L L +
Sbjct: 170 KQLTNLDISVNHIGAEGAQHIAEMNQLTILNISTNNIGYEGAKYIGKLKQLTCLTIFNNN 229
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
I G ++ + LT L++ I GA Y+ K L L+I + GV++I ++
Sbjct: 230 IDVEGAKYISEMKQLTDLNISYNNIDVEGAKYISELKQLTDLDISINQIGAKGVQYIAEM 289
Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
+ LT+L+ S N N+ D+ + IS + L +L++SN+ I++ G++ ++ +K+L L +
Sbjct: 290 NQLTILSASHN-NIGDEGAKYISEMKQLTNLDISNNSISNEGVKCIEEMKHLTVLNI 345
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 109/229 (47%), Gaps = 4/229 (1%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
LK L L LN N I D K +S L L SL IS + + G Y+ L++LT L+
Sbjct: 121 LKQLTHLYILN----NEIDDEGAKYISELNQLVSLDISYNNIGVEGAKYISELKQLTNLD 176
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
+ + A ++ + L LN++ + +G + K+ L L + N I E
Sbjct: 177 ISVNHIGAEGAQHIAEMNQLTILNISTNNIGYEGAKYIGKLKQLTCLTIFNNNIDVEGAK 236
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
++ + L LN+ I EG ++ L L L++S Q+G+ G+++++ + L ++
Sbjct: 237 YISEMKQLTDLNISYNNIDVEGAKYISELKQLTDLDISINQIGAKGVQYIAEMNQLTILS 296
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
S I D + ++ + L +L++ I++ G+ + + LT L++
Sbjct: 297 ASHNNIGDEGAKYISEMKQLTNLDISNNSISNEGVKCIEEMKHLTVLNI 345
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 111/262 (42%), Gaps = 26/262 (9%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I + G +++ L LT L + NN I +G K + L LV LD+
Sbjct: 110 IGNEGAKYISKLKQLTHL-YILNNEIDDEGAKYISELNQLVSLDISY------------- 155
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
N I K +S L L +L IS + + G ++ + +LT+LN+
Sbjct: 156 ------------NNIGVEGAKYISELKQLTNLDISVNHIGAEGAQHIAEMNQLTILNIST 203
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ + L L L + + +G + S++ L LN+ +N I E ++
Sbjct: 204 NNIGYEGAKYIGKLKQLTCLTIFNNNIDVEGAKYISEMKQLTDLNISYNNIDVEGAKYIS 263
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
L L L++ IG +G+ + + L L S +G G +++S + L ++++S
Sbjct: 264 ELKQLTDLDISINQIGAKGVQYIAEMNQLTILSASHNNIGDEGAKYISEMKQLTNLDISN 323
Query: 334 TGISDGSLRKLAGLSSLKSLNL 355
IS+ ++ + + L LN+
Sbjct: 324 NSISNEGVKCIEEMKHLTVLNI 345
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 101/212 (47%), Gaps = 15/212 (7%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ + L+S+D+S +++ G ++ + L +LD + I G +H+ ++ LT L+
Sbjct: 143 SELNQLVSLDISYNNIGVEGAKYISELKQLTNLDISVN-HIGAEGAQHIAEMNQLTILNI 201
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG------LMKLESLNIKWCNC 167
NN I +G K L L C I ++++G + +L LNI + N
Sbjct: 202 STNN-IGYEGAKYIGKLKQLT------CLTIFNNNIDVEGAKYISEMKQLTDLNISY-NN 253
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I K +S L L L IS +++ G+ Y+ + +LT+L+ + +S +
Sbjct: 254 IDVEGAKYISELKQLTDLDISINQIGAKGVQYIAEMNQLTILSASHNNIGDEGAKYISEM 313
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
L L+++ +S++G + ++ L VLN+
Sbjct: 314 KQLTNLDISNNSISNEGVKCIEEMKHLTVLNI 345
>gi|290998760|ref|XP_002681948.1| predicted protein [Naegleria gruberi]
gi|284095574|gb|EFC49204.1| predicted protein [Naegleria gruberi]
Length = 391
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/333 (25%), Positives = 154/333 (46%), Gaps = 6/333 (1%)
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL-ERCTRIHGG 147
N ++ D L+++ L LTSL I + A L L +LD+ + G
Sbjct: 53 NKKFKVDDETLQYIGELKQLTSLHIH---GIGIDNVWDIADLKQLTELDISDNKINSEGA 109
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
V + L L+I N D K +S L L L +S +++ + + Y+ + LT
Sbjct: 110 RVISESFKHLTKLDI--SNNTIDVGTKYISQLKQLTYLDVSNNEIEEEDVKYIGNMNGLT 167
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L+++ + +S L + L++ + D+G + S++ L LN+GFN I
Sbjct: 168 SLSIQYNHIGNIGAQYISGLKQITTLSIYSGDIGDEGAKYISEMKQLTNLNIGFNNINIR 227
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
+H+ L L L++ + G GL +T L L L D+++ S G++++S + L
Sbjct: 228 GAIHISKLKQLTELSISANNFGSGGLKYITQLKQLTKLYCCDSEIDSEGVKYISEMKQLT 287
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
++LS+ I+ ++ L L L L + + + G ++ L LTHLD+ ++D
Sbjct: 288 DVDLSYNNINSEGVKYLNKLKKLTKLYIGGNDLGNKGAMYISRLNQLTHLDICRNNVSDE 347
Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
G + K L SL I ++ GV++I+ ++
Sbjct: 348 GFKSISKMKQLSSLFISENTISGEGVEYIRKMT 380
>gi|290977411|ref|XP_002671431.1| leucine rich repeat protein [Naegleria gruberi]
gi|284085000|gb|EFC38687.1| leucine rich repeat protein [Naegleria gruberi]
Length = 389
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 146/324 (45%), Gaps = 29/324 (8%)
Query: 130 LINLVKLDLERC----TRIHGGLVNLKGLMKLESLNIKWC-------------------- 165
L N+ K+ L C I G + LK +L S++I +C
Sbjct: 68 LHNISKIKLRACDDYLESIKGLMEILKSYDQLRSVDIGYCYIGNSQTISEMKQLTSLDID 127
Query: 166 -NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE--GCPVTAACLD 222
NC+ + +K + L NL L I C+++ G + G++++ LN+ G V A L
Sbjct: 128 NNCVDEQGVKLIGELHNLTRLNIGCNRIGLEGFKSISGMKQMRDLNVSSSGAGVEGAKL- 186
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
+S L L N++ ++ ++G + ++ L +L++ N+I E + L L L
Sbjct: 187 -MSQLKHLTKFNISGNEIGEEGAKSIGELKWLTMLDICSNQIGAEGAKSISQLERLTKLY 245
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
+ GIG EG +++ L +L L + Q+GS G + +S L L + + I
Sbjct: 246 ISGNGIGPEGAQSISQLSHLTTLFIGGNQIGSKGSKSISQLKRLTILYIDSNEIGSEGAN 305
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
++ LS+LK L + QI D G +++ L LT L++ I D GA + K L L
Sbjct: 306 SISQLSNLKELYISDNQIGDEGAKSISQLKHLTTLEILRNEIGDQGAKSISQLKQLTRLH 365
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLN 426
I + D G K + + +L+N
Sbjct: 366 ISCNRIGDQGAKLLNRMKINSLIN 389
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 143/296 (48%), Gaps = 7/296 (2%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
LK L+S+D +C G + + + LTSL NN + QG+K L NL +L
Sbjct: 93 LKSYDQLRSVDIGYCY---IGNSQTISEMKQLTSLDID-NNCVDEQGVKLIGELHNLTRL 148
Query: 137 DLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
++ C RI G ++ G+ ++ LN+ + K +S L +L IS +++ +
Sbjct: 149 NI-GCNRIGLEGFKSISGMKQMRDLNVSSSGAGVEG-AKLMSQLKHLTKFNISGNEIGEE 206
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G + L+ LT+L++ + A S+S L L L ++ + +G + S++ L
Sbjct: 207 GAKSIGELKWLTMLDICSNQIGAEGAKSISQLERLTKLYISGNGIGPEGAQSISQLSHLT 266
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
L +G N+I + + L L L +DS IG EG +++ L NLK L +SD Q+G
Sbjct: 267 TLFIGGNQIGSKGSKSISQLKRLTILYIDSNEIGSEGANSISQLSNLKELYISDNQIGDE 326
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
G + +S L +L ++ + I D + ++ L L L++ +I D G L +
Sbjct: 327 GAKSISQLKHLTTLEILRNEIGDQGAKSISQLKQLTRLHISCNRIGDQGAKLLNRM 382
>gi|222617264|gb|EEE53396.1| hypothetical protein OsJ_36445 [Oryza sativa Japonica Group]
Length = 625
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 143/494 (28%), Positives = 221/494 (44%), Gaps = 65/494 (13%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFC 91
++ +CL + GV + +D + + L +VDLS D L + L+ L C
Sbjct: 73 VRRVCLARASGVGWRGLDALVAACPRLEAVDLSHCVGAGDREAAALAAATGLRELSLEKC 132
Query: 92 IQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGLIN-LVKLDLERCTRIHGGLV 149
+ ++D GL + G L LS + I+ G+ + + L LD+ + L
Sbjct: 133 LGVTDMGLAKVVVGCPRLEKLSLKWCREISDIGIDLLSKKCHELRSLDISYLKVGNESLR 192
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKL 206
++ L KLE L + C+CI D ++ L G +L+S+ +S C VT G+A L G L
Sbjct: 193 SISSLEKLEELAMVCCSCIDDDGLELLGKGSNSLQSVDVSRCDHVTSQGLASLIDGHNFL 252
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
LN AA DSL + F NL + L D +L VL L E++
Sbjct: 253 QKLN-------AA--DSLHEMRQSFLSNLAK--LKD----------TLTVLRLDGLEVSS 291
Query: 267 ECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC------NLKCLEL------------ 307
L+ + G NL + L C G+ DEG+ +L C +L C L
Sbjct: 292 SVLLAIGGCNNLVEIGLSKCNGVTDEGISSLVTQCSHLRVIDLTCCNLLTNNALDSIAEN 351
Query: 308 ----------SDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
S + + GL ++ NL+ I+L+ G++D +L+ LA S L L L
Sbjct: 352 CKMVEHLRLESCSSISEKGLEQIATSCPNLKEIDLTDCGVNDAALQHLAKCSELLVLKLG 411
Query: 357 -ARQITDTGLAALTSLTG-LTHLDLFGAR-ITDSGAAYLRN-FKNLRSLEICG-GGLTDA 411
I+D GLA ++S G L LDL+ ITD G A L N K ++ L +C +TD+
Sbjct: 412 LCSSISDKGLAFISSSCGKLIELDLYRCNSITDDGLAALANGCKKIKMLNLCYCNKITDS 471
Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSNSR-ITSAGLRHLKPLK 469
G+ H+ L LT L L +T + ++ G L+ +++ + AGL L
Sbjct: 472 GLGHLGSLEELTNLELRCLVRITGIGISSVAIGCKNLIEIDLKRCYSVDDAGLWALARYA 531
Query: 470 -NLRSLTLESCKVT 482
NLR LT+ C+VT
Sbjct: 532 LNLRQLTISYCQVT 545
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 108/230 (46%), Gaps = 32/230 (13%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL- 102
+++K ++ IA+ +L +DL+ V D+ L HL CS L L C ISD GL +
Sbjct: 366 ISEKGLEQIATSCPNLKEIDLTDCGVNDAALQHLAKCSELLVLKLGLCSSISDKGLAFIS 425
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L L R N+IT G+ A A G K++ LN+
Sbjct: 426 SSCGKLIELDLYRCNSITDDGLAALA-----------------------NGCKKIKMLNL 462
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLK-GLQKLTLLNLEGC-PVTAA 219
+CN ITDS + L L L +L++ C ++T GI+ + G + L ++L+ C V A
Sbjct: 463 CYCNKITDSGLGHLGSLEELTNLELRCLVRITGIGISSVAIGCKNLIEIDLKRCYSVDDA 522
Query: 220 CLDSLSALG-SLFYLNLNRCQLSDDG-CEKFSKIGSL---KVLNLGFNEI 264
L +L+ +L L ++ CQ++ G C S + L K+++L + I
Sbjct: 523 GLWALARYALNLRQLTISYCQVTGLGLCHLLSSLRCLQDVKMVHLSWVSI 572
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 116/436 (26%), Positives = 190/436 (43%), Gaps = 64/436 (14%)
Query: 80 CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
C L+++D + C+ D L + L LS + +T G+
Sbjct: 96 CPRLEAVDLSHCVGAGDREAAALAAATGLRELSLEKCLGVTDMGLAKV------------ 143
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN-LKSLQISCSKVTDSGIA 198
+ G +LE L++KWC I+D + LS + L+SL IS KV + +
Sbjct: 144 -----------VVGCPRLEKLSLKWCREISDIGIDLLSKKCHELRSLDISYLKVGNESLR 192
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVL 257
+ L+KL L + V +C+D DDG E K SL+ +
Sbjct: 193 SISSLEKLEELAM----VCCSCID-------------------DDGLELLGKGSNSLQSV 229
Query: 258 NLG-FNEITDECLVHL-KGLTNLESLNL-DSCG-IGDEGLVNLTGLCN-LKCLELSDTQV 312
++ + +T + L L G L+ LN DS + L NL L + L L L +V
Sbjct: 230 DVSRCDHVTSQGLASLIDGHNFLQKLNAADSLHEMRQSFLSNLAKLKDTLTVLRLDGLEV 289
Query: 313 GSSGLRHLSGLTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALT 369
SS L + G NL I LS G++D + L S L+ ++L +T+ L ++
Sbjct: 290 SSSVLLAIGGCNNLVEIGLSKCNGVTDEGISSLVTQCSHLRVIDLTCCNLLTNNALDSIA 349
Query: 370 SLTGLT-HLDLFG-ARITDSGAAYLR-NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
+ HL L + I++ G + + NL+ +++ G+ DA ++H+ S L +L
Sbjct: 350 ENCKMVEHLRLESCSSISEKGLEQIATSCPNLKEIDLTDCGVNDAALQHLAKCSELLVLK 409
Query: 427 LSQNCNLTDKTLELISGLTG-LVSLNVSN-SRITSAGLRHLK-PLKNLRSLTLESC-KVT 482
L +++DK L IS G L+ L++ + IT GL L K ++ L L C K+T
Sbjct: 410 LGLCSSISDKGLAFISSSCGKLIELDLYRCNSITDDGLAALANGCKKIKMLNLCYCNKIT 469
Query: 483 ANDIKRLQS-RDLPNL 497
+ + L S +L NL
Sbjct: 470 DSGLGHLGSLEELTNL 485
>gi|18568223|gb|AAL75966.1|AF467462_1 PpaB [Danio rerio]
Length = 392
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 106/312 (33%), Positives = 165/312 (52%), Gaps = 32/312 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + +LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 66 RGIRRVQTLSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 119
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC-P 215
LN+ C ITDS + ++ L NL+ L++ CS +T++G+ + GL +L LNL C
Sbjct: 120 LNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRH 179
Query: 216 VTAACLDSLSALG--------SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 264
V+ + L+ + SL YL L CQ L+D + SK + LKVLNL F I
Sbjct: 180 VSDVGIGHLAGMTRSAAEGCLSLEYLTLQDCQKLTDLSLKHISKGLTKLKVLNLSFCGGI 239
Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS 321
+D ++HL +T+L SLNL SC I D G+++L G L L++S ++G L ++
Sbjct: 240 SDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDVSFCDKIGDQSLACIA 299
Query: 322 -GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHL 377
GL L+S++L ISD + R + + L++LN+ +ITD GL + LT LT +
Sbjct: 300 QGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLTGI 359
Query: 378 DLFG-ARITDSG 388
DL+G +IT G
Sbjct: 360 DLYGCTKITKRG 371
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 188/356 (52%), Gaps = 54/356 (15%)
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTL 208
+G+ ++++L+++ S + G+ N++SL +S C +TD+G+ A+++ + L +
Sbjct: 66 RGIRRVQTLSLR------RSLSYVIQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 119
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITD 266
LNL C Q++D + ++ + +L+VL LG + IT+
Sbjct: 120 LNLSLCK-----------------------QITDSSLGRIAQYLKNLEVLELGGCSNITN 156
Query: 267 ECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLC--------NLKCLELSDTQ-VGSS 315
L+ + GL L+SLNL SC + D G+ +L G+ +L+ L L D Q +
Sbjct: 157 TGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLSLEYLTLQDCQKLTDL 216
Query: 316 GLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT 372
L+H+S GLT L+ +NLSF G ISD + L+ ++SL SLNL + I+DTG+ L T
Sbjct: 217 SLKHISKGLTKLKVLNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGT 276
Query: 373 -GLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLS 428
L+ LD+ F +I D A + + L+SL +C ++D G+ + ++ + L LN+
Sbjct: 277 LRLSGLDVSFCDKIGDQSLACIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIG 336
Query: 429 QNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVT 482
Q +TDK LELI+ LT L +++ ++IT GL + L L+ L ++T
Sbjct: 337 QCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVFNLGLWQMT 392
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 141/283 (49%), Gaps = 33/283 (11%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L ++L G S++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 128 ITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGH 187
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L G++ A G ++L L L+ C ++ L ++ KGL KL+
Sbjct: 188 LAGMTR-----------------SAAEGCLSLEYLTLQDCQKLTDLSLKHISKGLTKLKV 230
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
LN+ +C I+D+ M LS +T+L SL + SC ++D+GI +L G +L+ L++ C
Sbjct: 231 LNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDVSFCDKI 290
Query: 218 A----ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVH 271
AC+ L L L+L C +SDDG + + + L+ LN+G ITD+ L
Sbjct: 291 GDQSLACIA--QGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLEL 348
Query: 272 LK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQV 312
+ LT L ++L C I GL +T L LK L Q+
Sbjct: 349 IADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVFNLGLWQM 391
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 124/245 (50%), Gaps = 32/245 (13%)
Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 322
++G+ N+ESLNL C G+G + + L L C +++D+ +G R
Sbjct: 84 IQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLG----RIAQY 139
Query: 323 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 372
L NLE + L + I++ L +A GL LKSLNL + R ++D G+ L +T
Sbjct: 140 LKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGC 199
Query: 373 -GLTHLDLFGA-RITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNL 427
L +L L ++TD ++ + L+ +L CGG ++DAG+ H+ ++SL LNL
Sbjct: 200 LSLEYLTLQDCQKLTDLSLKHISKGLTKLKVLNLSFCGG-ISDAGMIHLSHMTSLWSLNL 258
Query: 428 SQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 484
N++D + L G L L+VS +I L + + L L+SL+L SC ++ +
Sbjct: 259 RSCDNISDTGIMHLAMGTLRLSGLDVSFCDKIGDQSLACIAQGLYQLKSLSLCSCHISDD 318
Query: 485 DIKRL 489
I R+
Sbjct: 319 GINRM 323
>gi|126340111|ref|XP_001366661.1| PREDICTED: f-box/LRR-repeat protein 14-like [Monodelphis domestica]
Length = 400
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 111/338 (32%), Positives = 180/338 (53%), Gaps = 48/338 (14%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+ G+ N++SL +S C +TD+G+ + + +GSL LN
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123
Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
L+ C Q++D + ++ + L+VL LG + IT+ L+ + GL L+SLNL SC +
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183
Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
D G+ +L G+ L+ L L D Q + L+H+S GLT L +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243
Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
L L+ + SL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302
Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362
Query: 452 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
+ +RIT GL + L L+ L L ++T ++ R
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTESEKVR 400
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 98/315 (31%), Positives = 169/315 (53%), Gaps = 32/315 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324
Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 325 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLP 381
Query: 349 SLKSLNLDARQITDT 363
LK LNL Q+T++
Sbjct: 382 CLKVLNLGLWQMTES 396
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 167/329 (50%), Gaps = 36/329 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A + +A G L L L CQ L+D + S+ + L++LNL F
Sbjct: 180 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 239
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
I+D L+HL + +L SLNL SC I D G+++L G L L++S +VG L +
Sbjct: 240 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 299
Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
++ GL L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT
Sbjct: 300 IAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 359
Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEI 403
+DL+G RIT G + L+ L +
Sbjct: 360 GIDLYGCTRITKRGLERITQLPCLKVLNL 388
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++T+
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTE 395
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 34/246 (13%)
Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 322
++G+ N+ESLNL C G+G + + L L C +++D+ +G ++L G
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 144
Query: 323 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 372
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 145 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 200
Query: 373 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 426
GL L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LN
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 259
Query: 427 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 483
L N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++
Sbjct: 260 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319
Query: 484 NDIKRL 489
+ I R+
Sbjct: 320 DGINRM 325
>gi|149175123|ref|ZP_01853746.1| hypothetical protein PM8797T_25626 [Planctomyces maris DSM 8797]
gi|148846101|gb|EDL60441.1| hypothetical protein PM8797T_25626 [Planctomyces maris DSM 8797]
Length = 1079
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 119/234 (50%), Gaps = 7/234 (2%)
Query: 239 QLSDDGCEKF------SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
QL+ +G +F +K GS +++ L +T E L L+ L+ L + +GDE
Sbjct: 36 QLAVEGLRRFCTNLQTNKDGSARLVRLSKPHVTLEALNQLEQFPRLDYLAMVCPHLGDEA 95
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
L+ + L NL L LS++ VG SGL L L LE + L T ++D L+ L+ L LK
Sbjct: 96 LLYIRDLTNLDTLMLSESAVGDSGLSCLKKLNKLERLYLDNTKVTDAGLQHLSSLKQLKV 155
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
L+L +TD G+ L L L L L G +++D+G L K L+ L + +T +
Sbjct: 156 LSLRNLNVTDQGMQTLADLNNLEVLFLSGTQVSDAGLKSLTELKQLKILYLARTAITGSQ 215
Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 466
+ + L SL L+L++ L ++ +SGLT L L + + + + ++ LK
Sbjct: 216 LSALNTLESLEHLSLNR-TKLQPVVVDALSGLTQLKGLEIQYTGLGESSIQQLK 268
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 100/210 (47%)
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L+ L VT L+ L L YL + L D+ + +L L L + + D
Sbjct: 59 LVRLSKPHVTLEALNQLEQFPRLDYLAMVCPHLGDEALLYIRDLTNLDTLMLSESAVGDS 118
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
L LK L LE L LD+ + D GL +L+ L LK L L + V G++ L+ L NLE
Sbjct: 119 GLSCLKKLNKLERLYLDNTKVTDAGLQHLSSLKQLKVLSLRNLNVTDQGMQTLADLNNLE 178
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
+ LS T +SD L+ L L LK L L IT + L+AL +L L HL L ++
Sbjct: 179 VLFLSGTQVSDAGLKSLTELKQLKILYLARTAITGSQLSALNTLESLEHLSLNRTKLQPV 238
Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
L L+ LEI GL ++ ++ +K
Sbjct: 239 VVDALSGLTQLKGLEIQYTGLGESSIQQLK 268
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 118/244 (48%), Gaps = 5/244 (2%)
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN---- 161
+ + R + +G++ F + K R R+ V L+ L +LE
Sbjct: 24 EKVAPVEARTPEQLAVEGLRRFCTNLQTNKDGSARLVRLSKPHVTLEALNQLEQFPRLDY 83
Query: 162 -IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
C + D + + LTNL +L +S S V DSG++ LK L KL L L+ VT A
Sbjct: 84 LAMVCPHLGDEALLYIRDLTNLDTLMLSESAVGDSGLSCLKKLNKLERLYLDNTKVTDAG 143
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
L LS+L L L+L ++D G + + + +L+VL L +++D L L L L+
Sbjct: 144 LQHLSSLKQLKVLSLRNLNVTDQGMQTLADLNNLEVLFLSGTQVSDAGLKSLTELKQLKI 203
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
L L I L L L +L+ L L+ T++ + LSGLT L+ + + +TG+ + S
Sbjct: 204 LYLARTAITGSQLSALNTLESLEHLSLNRTKLQPVVVDALSGLTQLKGLEIQYTGLGESS 263
Query: 341 LRKL 344
+++L
Sbjct: 264 IQQL 267
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 117/228 (51%), Gaps = 6/228 (2%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
GS+ L V LS VT L L+ L L C + D L ++R L+NL +L
Sbjct: 55 GSARL-VRLSKPHVTLEALNQLEQFPRLDYLAM-VCPHLGDEALLYIRDLTNLDTLMLS- 111
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+A+ G+ L L +L L+ GL +L L +L+ L+++ N +TD M+
Sbjct: 112 ESAVGDSGLSCLKKLNKLERLYLDNTKVTDAGLQHLSSLKQLKVLSLRNLN-VTDQGMQT 170
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ L NL+ L +S ++V+D+G+ L L++L +L L +T + L +L+ L SL +L+L
Sbjct: 171 LADLNNLEVLFLSGTQVSDAGLKSLTELKQLKILYLARTAITGSQLSALNTLESLEHLSL 230
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
NR +L + S + LK L + + + + + LK NLE N+
Sbjct: 231 NRTKLQPVVVDALSGLTQLKGLEIQYTGLGESSIQQLK--RNLEKTNI 276
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 94/189 (49%), Gaps = 11/189 (5%)
Query: 311 QVGSSGLRHLSGLTNLES--------INLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
Q+ GLR TNL++ + LS ++ +L +L L L + + D
Sbjct: 36 QLAVEGLRRFC--TNLQTNKDGSARLVRLSKPHVTLEALNQLEQFPRLDYLAMVCPHLGD 93
Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
L + LT L L L + + DSG + L+ L L + +TDAG++H+ L L
Sbjct: 94 EALLYIRDLTNLDTLMLSESAVGDSGLSCLKKLNKLERLYLDNTKVTDAGLQHLSSLKQL 153
Query: 423 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
+L+L +N N+TD+ ++ ++ L L L +S ++++ AGL+ L LK L+ L L +T
Sbjct: 154 KVLSL-RNLNVTDQGMQTLADLNNLEVLFLSGTQVSDAGLKSLTELKQLKILYLARTAIT 212
Query: 483 ANDIKRLQS 491
+ + L +
Sbjct: 213 GSQLSALNT 221
>gi|95108203|emb|CAD17823.3| lrr-gala family type III effector protein (gala 2) [Ralstonia
solanacearum GMI1000]
Length = 1035
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 118/376 (31%), Positives = 174/376 (46%), Gaps = 7/376 (1%)
Query: 58 SLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
S+ +DLSG S V+++GL +L L SLD + I + G + L ++LTSL+
Sbjct: 632 SVRHLDLSGCTGSAVSEAGLAYLARLP-LASLDLSDT-GIGNRGAQALAASASLTSLNLS 689
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N I G +A L LD+ + G L G L SL ++ I D ++
Sbjct: 690 -GNGIGTAGAEALGRNTVLTALDISANPIRNAGAQALAGSRSLTSLELR-DTGIEDGGIE 747
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L+ T L+SL IS + ++D A L + LT L GC +T L+ + SL L
Sbjct: 748 ALAANTVLRSLDISGNDLSDQSAAALAANRTLTSLKANGCGLTNDMAQQLARIRSLRTLE 807
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+ + D G ++ SL+ LNL N IT + L L L+SL++ G GD G +
Sbjct: 808 VGSNSIGDAGVLTIARNASLRSLNLSRNPITPQGLYPLALSRTLKSLDVSRIGCGDRGAL 867
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
L+G L L+L +V S G R L+ L S++L I + R LA L SLN
Sbjct: 868 LLSGNRALTSLKLGFNRVSSEGARRLAANRTLVSLDLRGNTIDVAAARALANAEPLASLN 927
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
+ ++ D AL LT LD+ R++ A L N L SL I + G +
Sbjct: 928 VSDCRLDDAVACALAESRTLTSLDVSWNRLSHRAARALANNPVLASLYISHNDIGPEGAQ 987
Query: 415 HIKDLSSLTLLNLSQN 430
+ D +SLT L+ N
Sbjct: 988 ALADSASLTFLDARAN 1003
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 150/337 (44%), Gaps = 54/337 (16%)
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC---QLSDDGCEKFSKI 251
+ + L+ L L+ G P++ A L +L S+ +L+L+ C +S+ G +++
Sbjct: 601 AAFSRLRNYPALESLSFHG-PLSLADLRALPP--SVRHLDLSGCTGSAVSEAGLAYLARL 657
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
L L+L I + L +L SLNL GIG G L L L++S
Sbjct: 658 -PLASLDLSDTGIGNRGAQALAASASLTSLNLSGNGIGTAGAEALGRNTVLTALDISANP 716
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
+ ++G + L+G +L S+ L TGI DG + LA + L+SL++ ++D AAL +
Sbjct: 717 IRNAGAQALAGSRSLTSLELRDTGIEDGGIEALAANTVLRSLDISGNDLSDQSAAALAAN 776
Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
LT L G +T+ A L ++LR+LE+ + DAGV I +SL LNLS+N
Sbjct: 777 RTLTSLKANGCGLTNDMAQQLARIRSLRTLEVGSNSIGDAGVLTIARNASLRSLNLSRNP 836
Query: 432 -----------NLTDKTLE------------LISGLTGLVSLNVSNSRITSAGLRHLKP- 467
+ T K+L+ L+SG L SL + +R++S G R L
Sbjct: 837 ITPQGLYPLALSRTLKSLDVSRIGCGDRGALLLSGNRALTSLKLGFNRVSSEGARRLAAN 896
Query: 468 -----------------------LKNLRSLTLESCKV 481
+ L SL + C++
Sbjct: 897 RTLVSLDLRGNTIDVAAARALANAEPLASLNVSDCRL 933
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 111/235 (47%), Gaps = 7/235 (2%)
Query: 268 CLVHLKGLT-NLESLNLDSC---GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
L L+ L ++ L+L C + + GL L L L L+LSDT +G+ G + L+
Sbjct: 622 SLADLRALPPSVRHLDLSGCTGSAVSEAGLAYLARLP-LASLDLSDTGIGNRGAQALAAS 680
Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
+L S+NLS GI L + L +L++ A I + G AL LT L+L
Sbjct: 681 ASLTSLNLSGNGIGTAGAEALGRNTVLTALDISANPIRNAGAQALAGSRSLTSLELRDTG 740
Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
I D G L LRSL+I G L+D + +LT L + C LT+ + ++
Sbjct: 741 IEDGGIEALAANTVLRSLDISGNDLSDQSAAALAANRTLTSLK-ANGCGLTNDMAQQLAR 799
Query: 444 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ-SRDLPNL 497
+ L +L V ++ I AG+ + +LRSL L +T + L SR L +L
Sbjct: 800 IRSLRTLEVGSNSIGDAGVLTIARNASLRSLNLSRNPITPQGLYPLALSRTLKSL 854
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 137/332 (41%), Gaps = 67/332 (20%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D + LSGL + L+ +LKG TL +L+ P T L
Sbjct: 94 DRRALSGLRDHPHLES----------VHLKG--DFTLADLKALPTT------------LR 129
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
+L+L+ C GS K + +L GL LESLN+ IGD
Sbjct: 130 HLDLSEC------------TGSAKSF---------RAIAYLAGLP-LESLNVAGAEIGDG 167
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
G L +LK L + + +SG R L+ LES++L+ I D + LAG SL+
Sbjct: 168 GARLLAANPSLKSLNAASGGISASGARMLAESPTLESLDLTQNAIGDAGAQALAGSRSLR 227
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDL------------------FGARITDSGAAYLR 393
L + +TD G AL L LDL IT GA L
Sbjct: 228 HLAVRNGLVTDLGTRALALNPALVSLDLGNLVTETGNQVEQDGYDKTANNITAQGAWALA 287
Query: 394 NFKNLRSLEICGGGL-TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
++L+SL + G L D GV+ + +LT LN++ N+T + + ++ L SL+V
Sbjct: 288 QNRSLKSLSVQGNDLCGDDGVRALARNRTLTSLNVAF-TNMTSASAKALADNPVLTSLSV 346
Query: 453 S-NSRITSAGLRHLKPLKNLRSLTLESCKVTA 483
N + AG L ++L SL ++A
Sbjct: 347 RWNYGLDDAGAMELAMSRSLTSLDARDTGMSA 378
>gi|301756605|ref|XP_002914145.1| PREDICTED: f-box/LRR-repeat protein 14-like [Ailuropoda
melanoleuca]
Length = 420
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 111/338 (32%), Positives = 180/338 (53%), Gaps = 48/338 (14%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+ G+ N++SL +S C +TD+G+ + + +GSL LN
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123
Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
L+ C Q++D + ++ + L+VL LG + IT+ L+ + GL L+SLNL SC +
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183
Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
D G+ +L G+ L+ L L D Q + L+H+S GLT L +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243
Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
L L+ + SL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302
Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362
Query: 452 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
+ +RIT GL + L L+ L L ++T ++ R
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKVR 400
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 169/315 (53%), Gaps = 32/315 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324
Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 325 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLP 381
Query: 349 SLKSLNLDARQITDT 363
LK LNL Q+TD+
Sbjct: 382 CLKVLNLGLWQMTDS 396
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 109/349 (31%), Positives = 176/349 (50%), Gaps = 38/349 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A + +A G L L L CQ L+D + S+ + L++LNL F
Sbjct: 180 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 239
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
I+D L+HL + +L SLNL SC I D G+++L G L L++S +VG L +
Sbjct: 240 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 299
Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
++ GL L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT
Sbjct: 300 IAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 359
Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
+DL+G RIT G + L+ L + +TD+ + ++D S
Sbjct: 360 GIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS--EKVRDCSDFA 406
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTD 395
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 34/246 (13%)
Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 322
++G+ N+ESLNL C G+G + + L L C +++D+ +G ++L G
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 144
Query: 323 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 372
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 145 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 200
Query: 373 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 426
GL L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LN
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 259
Query: 427 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 483
L N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++
Sbjct: 260 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319
Query: 484 NDIKRL 489
+ I R+
Sbjct: 320 DGINRM 325
>gi|410963525|ref|XP_003988315.1| PREDICTED: F-box/LRR-repeat protein 14, partial [Felis catus]
Length = 411
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 111/338 (32%), Positives = 180/338 (53%), Gaps = 48/338 (14%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+ G+ N++SL +S C +TD+G+ + + +GSL LN
Sbjct: 77 IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 114
Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
L+ C Q++D + ++ + L+VL LG + IT+ L+ + GL L+SLNL SC +
Sbjct: 115 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 174
Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
D G+ +L G+ L+ L L D Q + L+H+S GLT L +NLSF G ISD
Sbjct: 175 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 234
Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
L L+ + SL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ +
Sbjct: 235 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 293
Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L ++
Sbjct: 294 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 353
Query: 452 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
+ +RIT GL + L L+ L L ++T ++ R
Sbjct: 354 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKVR 391
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 169/315 (53%), Gaps = 32/315 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 77 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 136
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 137 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 196
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 197 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 256
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 257 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 315
Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 316 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLP 372
Query: 349 SLKSLNLDARQITDT 363
LK LNL Q+TD+
Sbjct: 373 CLKVLNLGLWQMTDS 387
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 109/349 (31%), Positives = 176/349 (50%), Gaps = 38/349 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 59 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 112
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 113 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 170
Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A + +A G L L L CQ L+D + S+ + L++LNL F
Sbjct: 171 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 230
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
I+D L+HL + +L SLNL SC I D G+++L G L L++S +VG L +
Sbjct: 231 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 290
Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
++ GL L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT
Sbjct: 291 IAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 350
Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
+DL+G RIT G + L+ L + +TD+ + ++D S
Sbjct: 351 GIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS--EKVRDCSDFA 397
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 206 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 265
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 266 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 325
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 326 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 362
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 363 RGLERITQLPCLKVLNLGLWQMTD 386
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 34/246 (13%)
Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 322
++G+ N+ESLNL C G+G + + L L C +++D+ +G ++L G
Sbjct: 77 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 135
Query: 323 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 372
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 136 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 191
Query: 373 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 426
GL L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LN
Sbjct: 192 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 250
Query: 427 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 483
L N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++
Sbjct: 251 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 310
Query: 484 NDIKRL 489
+ I R+
Sbjct: 311 DGINRM 316
>gi|46447568|ref|YP_008933.1| hypothetical protein pc1934 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401209|emb|CAF24658.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 261
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 142/244 (58%), Gaps = 12/244 (4%)
Query: 206 LTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE 263
L LNL GC +T A L L+ L +L +LNL+RC +L+D G + + +L+ L L + E
Sbjct: 3 LKYLNLSGCSKLTNAGLAHLTPLKTLQHLNLSRCSRLTDAGLAHLTPLTALQHLGLSYCE 62
Query: 264 -ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHL 320
+TD L HL LT L+ L L +C + D GLV+LT L +L+ L+LS+ + GL HL
Sbjct: 63 NLTDAGLAHLALLTALQDLALANCKHLTDVGLVHLTPLTSLQHLDLSNCMNLTDDGLVHL 122
Query: 321 SGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLD--ARQITDTGLAALTSLTGLTHL 377
+ LT L+ + LS ++D L L L++L++L L + +T GLA L LT L L
Sbjct: 123 TPLTALQHLVLSGCDNLTDAGLAHLTPLTALQTLGLRRWCQNLTGDGLAHLAPLTALQTL 182
Query: 378 DL-FGARITDSGAAYLRNFKNLRSL--EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
DL + + D+G A+L L++L + C LTDAG+ H+K L++L L+LS +LT
Sbjct: 183 DLSYCKNLKDAGLAHLTPLTALQTLGLKWCSK-LTDAGLAHLKPLAALQHLDLSHCRSLT 241
Query: 435 DKTL 438
D L
Sbjct: 242 DAGL 245
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 130/239 (54%), Gaps = 13/239 (5%)
Query: 253 SLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD- 309
+LK LNL G +++T+ L HL L L+ LNL C + D GL +LT L L+ L LS
Sbjct: 2 ALKYLNLSGCSKLTNAGLAHLTPLKTLQHLNLSRCSRLTDAGLAHLTPLTALQHLGLSYC 61
Query: 310 ---TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGL 365
T G + L L+ L +L N ++D L L L+SL+ L+L + +TD GL
Sbjct: 62 ENLTDAGLAHLALLTALQDLALANCKH--LTDVGLVHLTPLTSLQHLDLSNCMNLTDDGL 119
Query: 366 AALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSL 422
LT LT L HL L G +TD+G A+L L++L + LT G+ H+ L++L
Sbjct: 120 VHLTPLTALQHLVLSGCDNLTDAGLAHLTPLTALQTLGLRRWCQNLTGDGLAHLAPLTAL 179
Query: 423 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 480
L+LS NL D L ++ LT L +L + S++T AGL HLKPL L+ L L C+
Sbjct: 180 QTLDLSYCKNLKDAGLAHLTPLTALQTLGLKWCSKLTDAGLAHLKPLAALQHLDLSHCR 238
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 128/241 (53%), Gaps = 8/241 (3%)
Query: 62 VDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
++LSG S +T++GL HL LQ L+ + C +++D GL HL L+ L L +T
Sbjct: 6 LNLSGCSKLTNAGLAHLTPLKTLQHLNLSRCSRLTDAGLAHLTPLTALQHLGLSYCENLT 65
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
G+ A L L L L C + GLV+L L L+ L++ C +TD + L+ L
Sbjct: 66 DAGLAHLALLTALQDLALANCKHLTDVGLVHLTPLTSLQHLDLSNCMNLTDDGLVHLTPL 125
Query: 180 TNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNL-EGCP-VTAACLDSLSALGSLFYLNLN 236
T L+ L +S C +TD+G+A+L L L L L C +T L L+ L +L L+L+
Sbjct: 126 TALQHLVLSGCDNLTDAGLAHLTPLTALQTLGLRRWCQNLTGDGLAHLAPLTALQTLDLS 185
Query: 237 RCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGL 293
C+ L D G + + +L+ L L + +++TD L HLK L L+ L+L C + D GL
Sbjct: 186 YCKNLKDAGLAHLTPLTALQTLGLKWCSKLTDAGLAHLKPLAALQHLDLSHCRSLTDAGL 245
Query: 294 V 294
Sbjct: 246 A 246
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 68/116 (58%), Gaps = 3/116 (2%)
Query: 373 GLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQN 430
L +L+L G +++T++G A+L K L+ L + LTDAG+ H+ L++L L LS
Sbjct: 2 ALKYLNLSGCSKLTNAGLAHLTPLKTLQHLNLSRCSRLTDAGLAHLTPLTALQHLGLSYC 61
Query: 431 CNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCKVTAND 485
NLTD L ++ LT L L ++N + +T GL HL PL +L+ L L +C +D
Sbjct: 62 ENLTDAGLAHLALLTALQDLALANCKHLTDVGLVHLTPLTSLQHLDLSNCMNLTDD 117
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
++L ++DLS ++ D+GL HL + LQ+L +C +++D GL HL+ L+ L L
Sbjct: 177 TALQTLDLSYCKNLKDAGLAHLTPLTALQTLGLKWCSKLTDAGLAHLKPLAALQHLDLSH 236
Query: 116 NNAITAQGMKAFAGLINLVKLDLER 140
++T G+ F L + L++ R
Sbjct: 237 CRSLTDAGLARFKILATSLNLEIVR 261
>gi|290991310|ref|XP_002678278.1| predicted protein [Naegleria gruberi]
gi|284091890|gb|EFC45534.1| predicted protein [Naegleria gruberi]
Length = 346
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 133/271 (49%), Gaps = 4/271 (1%)
Query: 149 VNLKGLMKLESLN-IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
+N + L ++ ++N +K C+CI D + L NL +L ++C K+ D G+ + +++LT
Sbjct: 71 INGQFLQRIVAVNGMKKCDCIPFLDQ--VFDLKNLTTLDVNCMKIKDEGVKIISEMKQLT 128
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
LN+ ++ + +S + L LN++R + +G S++ L LN+ N I E
Sbjct: 129 NLNVGSSGISVEGVKYISGMNQLTNLNISRNNIRAEGARYVSEMKLLTNLNIYLNGIRAE 188
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
++ + L LN+ S I D+G +L + L L ++ + G + +S + +L
Sbjct: 189 GTKYISEMKELTCLNIMSNAIHDKGAEHLRQMPKLNTLNINSNSISVEGAKFISEIQSLT 248
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
++++ F I D ++ ++ + L L I + G ++ + LT L++ +
Sbjct: 249 NLDIGFNTIGDDGVKFISKMEKLTKLYTMYINIGEKGAKHISEMEQLTSLNINSNNVGTE 308
Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
GA YL K+L + IC + D + IKD
Sbjct: 309 GAKYLCEMKHLTYMNICNNNV-DKQSQFIKD 338
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 127/256 (49%), Gaps = 3/256 (1%)
Query: 203 LQKLTLLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
LQ++ +N ++ C LD + L +L L++N ++ D+G + S++ L LN+G
Sbjct: 76 LQRIVAVNGMKKCDCIPF-LDQVFDLKNLTTLDVNCMKIKDEGVKIISEMKQLTNLNVGS 134
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
+ I+ E + ++ G+ L +LN+ I EG ++ + L L + + + G +++S
Sbjct: 135 SGISVEGVKYISGMNQLTNLNISRNNIRAEGARYVSEMKLLTNLNIYLNGIRAEGTKYIS 194
Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
+ L +N+ I D L + L +LN+++ I+ G ++ + LT+LD+
Sbjct: 195 EMKELTCLNIMSNAIHDKGAEHLRQMPKLNTLNINSNSISVEGAKFISEIQSLTNLDIGF 254
Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
I D G ++ + L L + + G KHI ++ LT LN++ N N+ + + +
Sbjct: 255 NTIGDDGVKFISKMEKLTKLYTMYINIGEKGAKHISEMEQLTSLNINSN-NVGTEGAKYL 313
Query: 442 SGLTGLVSLNVSNSRI 457
+ L +N+ N+ +
Sbjct: 314 CEMKHLTYMNICNNNV 329
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 78/154 (50%), Gaps = 4/154 (2%)
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
L ++ L +L +L+++ +I D G+ ++ + LT+L++ + I+ G Y+ L +
Sbjct: 94 LDQVFDLKNLTTLDVNCMKIKDEGVKIISEMKQLTNLNVGSSGISVEGVKYISGMNQLTN 153
Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
L I + G +++ ++ LT LN+ N + T + IS + L LN+ ++ I
Sbjct: 154 LNISRNNIRAEGARYVSEMKLLTNLNIYLNGIRAEGT-KYISEMKELTCLNIMSNAIHDK 212
Query: 461 GLRHLKPLKNLRSLTLESCKVT---ANDIKRLQS 491
G HL+ + L +L + S ++ A I +QS
Sbjct: 213 GAEHLRQMPKLNTLNINSNSISVEGAKFISEIQS 246
>gi|290981600|ref|XP_002673518.1| predicted protein [Naegleria gruberi]
gi|284087102|gb|EFC40774.1| predicted protein [Naegleria gruberi]
Length = 399
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 91/350 (26%), Positives = 154/350 (44%), Gaps = 49/350 (14%)
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
C + + ++ L NLK L I S + D YL + L LN C + L
Sbjct: 34 CRSVGVAILENFPYLENLKELIIDGSYIGDENAIYLSKFKCLKRLNACSCNLGPKSLQYF 93
Query: 225 SALGSLFYLNLNRCQ-----------------------LSDDGCEKFSKIGSLKVLNLGF 261
S L SL L L + LS D E+ S+I +L LNL
Sbjct: 94 SNLNSLEELTLPYNKVSGGLYHLKKLKGLKKLDLSKNVLSMDDIEQLSEISNLNHLNLNG 153
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
++ +C+ ++ L L +L L++ I + GL N++ + L L+L GS LRHL
Sbjct: 154 VDLGGKCMEYISKLP-LITLELEASNIDEIGLGNISQITTLSKLKLFGNNFGSESLRHLV 212
Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
L+NL+ ++L++ I D + L+ L SL+ L+L I + G+ ++ L L+ L+L
Sbjct: 213 KLSNLKYLSLAYNKIDDEGVEYLSLLQSLEYLSLSYNNIGNDGVQFISKLENLSQLELIR 272
Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
RI + G ++ KNL L + G I+++ +L L + Q
Sbjct: 273 NRIDERGVQFISKMKNLTKLNL--------GENPIRNIGALYLSKMKQ------------ 312
Query: 442 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 491
L L++ ++I + HL +KNL+ L +E ++ ++ L+
Sbjct: 313 -----LKGLDLDGTKIDDFSIEHLCLMKNLQYLNIERTNLSETKVETLKE 357
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 90/193 (46%), Gaps = 27/193 (13%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
SQ ++L + L G++ L HL SNL+ L + +I D G+E+L L +L LS
Sbjct: 188 SQITTLSKLKLFGNNFGSESLRHLVKLSNLKYLSLAYN-KIDDEGVEYLSLLQSLEYLSL 246
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN I G++ + L NL +L+L R N I + +
Sbjct: 247 SYNN-IGNDGVQFISKLENLSQLELIR-------------------------NRIDERGV 280
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+ +S + NL L + + + + G YL +++L L+L+G + ++ L + +L YL
Sbjct: 281 QFISKMKNLTKLNLGENPIRNIGALYLSKMKQLKGLDLDGTKIDDFSIEHLCLMKNLQYL 340
Query: 234 NLNRCQLSDDGCE 246
N+ R LS+ E
Sbjct: 341 NIERTNLSETKVE 353
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 119/267 (44%), Gaps = 24/267 (8%)
Query: 77 LKDCSNLQSLD-FNFCIQISDGGLEHL---------------------RGLSNLTSLSFR 114
L+ SNL SL+ GGL HL LS +++L+
Sbjct: 90 LQYFSNLNSLEELTLPYNKVSGGLYHLKKLKGLKKLDLSKNVLSMDDIEQLSEISNLNHL 149
Query: 115 RNNAITAQGM-KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N + G + + L+ L+LE GL N+ + L L + + N +
Sbjct: 150 NLNGVDLGGKCMEYISKLPLITLELEASNIDEIGLGNISQITTLSKLKL-FGNNFGSESL 208
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+ L L+NLK L ++ +K+ D G+ YL LQ L L+L + + +S L +L L
Sbjct: 209 RHLVKLSNLKYLSLAYNKIDDEGVEYLSLLQSLEYLSLSYNNIGNDGVQFISKLENLSQL 268
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
L R ++ + G + SK+ +L LNLG N I + ++L + L+ L+LD I D +
Sbjct: 269 ELIRNRIDERGVQFISKMKNLTKLNLGENPIRNIGALYLSKMKQLKGLDLDGTKIDDFSI 328
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHL 320
+L + NL+ L + T + + + L
Sbjct: 329 EHLCLMKNLQYLNIERTNLSETKVETL 355
>gi|290977818|ref|XP_002671634.1| predicted protein [Naegleria gruberi]
gi|284085204|gb|EFC38890.1| predicted protein [Naegleria gruberi]
Length = 359
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 133/278 (47%), Gaps = 1/278 (0%)
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
F + L K+ L T G L GL L +++ N + + LS L+ L L
Sbjct: 58 FESMKKLTKVYLSSETIDSKGAKYLAGLNNLTDIHVDSYNNFGNESLYYLSKLSQLTKLS 117
Query: 187 I-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
I S + +T G+ YL L KLT L + G T + +S+ L LN+ +SD
Sbjct: 118 IGSKNNITYEGVEYLSQLSKLTYLCITGNETTDEQVKLISSFKQLKTLNIYSNLISDKSA 177
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
E S + L VL + N+I + + G+ L+ L+ +G+ G+ ++ + L L
Sbjct: 178 EYISNLDELTVLVINNNQIGSKGAKFISGMKQLKQLSDSYTKLGETGVKHICEMTQLTHL 237
Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
+ +T++G+SG +++ L L+ +++S+ GI++ + L+ L L LN+ I + L
Sbjct: 238 YICNTKIGNSGAKNIIKLKQLQLLDISYNGINNEIVELLSQLDQLTFLNISGSAIDNLAL 297
Query: 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
+ + LT+LD+ I D G Y+ K L+ + I
Sbjct: 298 TFINKMNQLTYLDVSYNGINDEGLIYISKMKPLKQVGI 335
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 130/264 (49%), Gaps = 7/264 (2%)
Query: 174 KPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNL-EGCPVTAACLDSLSALGSLF 231
K L+GL NL + + S + + + YL L +LT L++ +T ++ LS L L
Sbjct: 80 KYLAGLNNLTDIHVDSYNNFGNESLYYLSKLSQLTKLSIGSKNNITYEGVEYLSQLSKLT 139
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
YL + + +D+ + S LK LN+ N I+D+ ++ L L L +++ IG +
Sbjct: 140 YLCITGNETTDEQVKLISSFKQLKTLNIYSNLISDKSAEYISNLDELTVLVINNNQIGSK 199
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
G ++G+ LK L S T++G +G++H+ +T L + + T I + + + L L+
Sbjct: 200 GAKFISGMKQLKQLSDSYTKLGETGVKHICEMTQLTHLYICNTKIGNSGAKNIIKLKQLQ 259
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
L++ I + + L+ L LT L++ G+ I + ++ L L++ G+ D
Sbjct: 260 LLDISYNGINNEIVELLSQLDQLTFLNISGSAIDNLALTFINKMNQLTYLDVSYNGINDE 319
Query: 412 GVKHIKDLSSLT-----LLNLSQN 430
G+ +I + L L LS+N
Sbjct: 320 GLIYISKMKPLKQVGIGFLQLSRN 343
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 97/177 (54%), Gaps = 3/177 (1%)
Query: 307 LSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQ-ITDTG 364
LS + S G ++L+GL NL I++ S+ + SL L+ LS L L++ ++ IT G
Sbjct: 69 LSSETIDSKGAKYLAGLNNLTDIHVDSYNNFGNESLYYLSKLSQLTKLSIGSKNNITYEG 128
Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424
+ L+ L+ LT+L + G TD + +FK L++L I ++D ++I +L LT+
Sbjct: 129 VEYLSQLSKLTYLCITGNETTDEQVKLISSFKQLKTLNIYSNLISDKSAEYISNLDELTV 188
Query: 425 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
L ++ N + K + ISG+ L L+ S +++ G++H+ + L L + + K+
Sbjct: 189 LVINNN-QIGSKGAKFISGMKQLKQLSDSYTKLGETGVKHICEMTQLTHLYICNTKI 244
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 117/256 (45%), Gaps = 27/256 (10%)
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLK 303
CE F + L + L I + +L GL NL +++DS G+E L L+ L L
Sbjct: 55 CEIFESMKKLTKVYLSSETIDSKGAKYLAGLNNLTDIHVDSYNNFGNESLYYLSKLSQLT 114
Query: 304 CLEL-SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L + S + G+ +LS L+ L + ++ +D ++ ++ LK+LN+ + I+D
Sbjct: 115 KLSIGSKNNITYEGVEYLSQLSKLTYLCITGNETTDEQVKLISSFKQLKTLNIYSNLISD 174
Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
+++L LT L + +I GA ++ K L+ L L + GVKHI +++ L
Sbjct: 175 KSAEYISNLDELTVLVINNNQIGSKGAKFISGMKQLKQLSDSYTKLGETGVKHICEMTQL 234
Query: 423 T------------------------LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
T LL++S N + ++ +EL+S L L LN+S S I
Sbjct: 235 THLYICNTKIGNSGAKNIIKLKQLQLLDISYN-GINNEIVELLSQLDQLTFLNISGSAID 293
Query: 459 SAGLRHLKPLKNLRSL 474
+ L + + L L
Sbjct: 294 NLALTFINKMNQLTYL 309
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 123/285 (43%), Gaps = 30/285 (10%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L V LS + G +L +NL + + + L +L LS LT LS N
Sbjct: 64 LTKVYLSSETIDSKGAKYLAGLNNLTDIHVDSYNNFGNESLYYLSKLSQLTKLSIGSKNN 123
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT +G++ + L L L + + + +L++LNI + N I+D + +S
Sbjct: 124 ITYEGVEYLSQLSKLTYLCITGNETTDEQVKLISSFKQLKTLNI-YSNLISDKSAEYISN 182
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L L L I+ +++ G ++ G+++L L+ + + + + L +L +
Sbjct: 183 LDELTVLVINNNQIGSKGAKFISGMKQLKQLSDSYTKLGETGVKHICEMTQLTHLYICNT 242
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDE------------------------CLVHLKG 274
++ + G + K+ L++L++ +N I +E L +
Sbjct: 243 KIGNSGAKNIIKLKQLQLLDISYNGINNEIVELLSQLDQLTFLNISGSAIDNLALTFINK 302
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLK-----CLELSDTQVGS 314
+ L L++ GI DEGL+ ++ + LK L+LS Q+GS
Sbjct: 303 MNQLTYLDVSYNGINDEGLIYISKMKPLKQVGIGFLQLSRNQMGS 347
>gi|344278047|ref|XP_003410808.1| PREDICTED: F-box/LRR-repeat protein 14 [Loxodonta africana]
Length = 514
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 113/344 (32%), Positives = 183/344 (53%), Gaps = 50/344 (14%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+ G+ N++SL +S C +TD+G+ + + +GSL LN
Sbjct: 86 IQGMANIESLNLSGCYHLTDNGLGH----------------------AFVQEIGSLRALN 123
Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
L+ C Q++D + ++ + L+VL LG + IT+ L+ + GL L+SLNL SC +
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183
Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
D G+ +L G+ L+ L L D Q + L+H+S GLT L +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243
Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
L L+ + SL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302
Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362
Query: 452 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL 494
+ +RIT GL + L L+ L L ++T D ++ SR+
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMT--DSEKTSSREF 404
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 101/319 (31%), Positives = 170/319 (53%), Gaps = 40/319 (12%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYHLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324
Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGL----RHLSGLTNLESINLSFTGISDGSLRKL 344
+ GL L +C+ ++D GL HLS LT ++ T I+ L ++
Sbjct: 325 MVRQMHGLRTLNIGQCVRITD-----KGLELIAEHLSQLTGIDLYGC--TRITKRGLERI 377
Query: 345 AGLSSLKSLNLDARQITDT 363
L LK LNL Q+TD+
Sbjct: 378 TQLPCLKVLNLGLWQMTDS 396
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGC-----------------------TRITK 371
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTD 395
>gi|18204097|gb|AAH21329.1| F-box and leucine-rich repeat protein 14 [Mus musculus]
Length = 400
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 111/338 (32%), Positives = 180/338 (53%), Gaps = 48/338 (14%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+ G+ N++SL +S C +TD+G+ + + +GSL LN
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123
Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
L+ C Q++D + ++ + L+VL LG + IT+ L+ + GL L+SLNL SC +
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183
Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
D G+ +L G+ L+ L L D Q + L+H+S GLT L +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243
Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
L L+ + SL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302
Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362
Query: 452 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
+ +RIT GL + L L+ L L ++T ++ R
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKVR 400
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 169/315 (53%), Gaps = 32/315 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324
Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 325 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLP 381
Query: 349 SLKSLNLDARQITDT 363
LK LNL Q+TD+
Sbjct: 382 CLKVLNLGLWQMTDS 396
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 107/337 (31%), Positives = 171/337 (50%), Gaps = 36/337 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A + +A G L L L CQ L+D + S+ + L++LNL F
Sbjct: 180 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 239
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
I+D L+HL + +L SLNL SC I D G+++L G L L++S +VG L +
Sbjct: 240 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 299
Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
++ GL L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT
Sbjct: 300 IAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 359
Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
+DL+G RIT G + L+ L + +TD+
Sbjct: 360 GIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 396
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTD 395
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 34/246 (13%)
Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 322
++G+ N+ESLNL C G+G + + L L C +++D+ +G ++L G
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 144
Query: 323 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 372
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 145 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 200
Query: 373 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 426
GL L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LN
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 259
Query: 427 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 483
L N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++
Sbjct: 260 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319
Query: 484 NDIKRL 489
+ I R+
Sbjct: 320 DGINRM 325
>gi|395845616|ref|XP_003795523.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 2 [Otolemur
garnettii]
Length = 401
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 113/339 (33%), Positives = 182/339 (53%), Gaps = 49/339 (14%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+ G+ N++SL +S C +TD+G+ + + +GSL LN
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123
Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
L+ C Q++D + ++ + L+VL LG + IT+ L+ + GL L+SLNL SC +
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183
Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
D G+ +L G+ L+ L L D Q + L+H+S GLT L +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243
Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
L L+ + SL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302
Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362
Query: 452 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
+ +RIT GL + L L+ L L ++T ++ KRL
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSE-KRL 400
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 169/315 (53%), Gaps = 32/315 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324
Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 325 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLP 381
Query: 349 SLKSLNLDARQITDT 363
LK LNL Q+TD+
Sbjct: 382 CLKVLNLGLWQMTDS 396
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 107/337 (31%), Positives = 171/337 (50%), Gaps = 36/337 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A + +A G L L L CQ L+D + S+ + L++LNL F
Sbjct: 180 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 239
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
I+D L+HL + +L SLNL SC I D G+++L G L L++S +VG L +
Sbjct: 240 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 299
Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
++ GL L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT
Sbjct: 300 IAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 359
Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
+DL+G RIT G + L+ L + +TD+
Sbjct: 360 GIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 396
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTD 395
>gi|345791735|ref|XP_543882.2| PREDICTED: F-box/LRR-repeat protein 14 [Canis lupus familiaris]
Length = 420
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 111/338 (32%), Positives = 180/338 (53%), Gaps = 48/338 (14%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+ G+ N++SL +S C +TD+G+ + + +GSL LN
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123
Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
L+ C Q++D + ++ + L+VL LG + IT+ L+ + GL L+SLNL SC +
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183
Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
D G+ +L G+ L+ L L D Q + L+H+S GLT L +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243
Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
L L+ + SL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302
Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362
Query: 452 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
+ +RIT GL + L L+ L L ++T ++ R
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKVR 400
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 99/311 (31%), Positives = 167/311 (53%), Gaps = 32/311 (10%)
Query: 81 SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-LVKLD 137
+N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L L+
Sbjct: 90 ANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLE 149
Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQI 187
L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+ L +
Sbjct: 150 LGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTL 209
Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C +SD
Sbjct: 210 QDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDT 269
Query: 244 GCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL----VN 295
G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 270 GIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQ 328
Query: 296 LTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L LK
Sbjct: 329 MHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLPCLKV 385
Query: 353 LNLDARQITDT 363
LNL Q+TD+
Sbjct: 386 LNLGLWQMTDS 396
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 109/349 (31%), Positives = 176/349 (50%), Gaps = 38/349 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A + +A G L L L CQ L+D + S+ + L++LNL F
Sbjct: 180 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 239
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
I+D L+HL + +L SLNL SC I D G+++L G L L++S +VG L +
Sbjct: 240 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 299
Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
++ GL L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT
Sbjct: 300 IAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 359
Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
+DL+G RIT G + L+ L + +TD+ + ++D S
Sbjct: 360 GIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS--EKVRDCSDFA 406
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTD 395
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 34/246 (13%)
Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 322
++G+ N+ESLNL C G+G + + L L C +++D+ +G ++L G
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 144
Query: 323 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 372
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 145 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 200
Query: 373 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 426
GL L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LN
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 259
Query: 427 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 483
L N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++
Sbjct: 260 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319
Query: 484 NDIKRL 489
+ I R+
Sbjct: 320 DGINRM 325
>gi|115495249|ref|NP_001069415.1| F-box/LRR-repeat protein 14 [Bos taurus]
gi|225543352|ref|NP_598701.2| F-box/LRR-repeat protein 14 [Mus musculus]
gi|404312677|ref|NP_001258205.1| F-box/LRR-repeat protein 14 [Rattus norvegicus]
gi|296211085|ref|XP_002752262.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 1 [Callithrix
jacchus]
gi|332249161|ref|XP_003273733.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 1 [Nomascus
leucogenys]
gi|348555895|ref|XP_003463758.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cavia porcellus]
gi|395845614|ref|XP_003795522.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 1 [Otolemur
garnettii]
gi|48428059|sp|Q8BID8.1|FXL14_MOUSE RecName: Full=F-box/LRR-repeat protein 14; AltName: Full=F-box and
leucine-rich repeat protein 14
gi|122144674|sp|Q17R01.1|FXL14_BOVIN RecName: Full=F-box/LRR-repeat protein 14; AltName: Full=F-box and
leucine-rich repeat protein 14
gi|26351129|dbj|BAC39201.1| unnamed protein product [Mus musculus]
gi|74196388|dbj|BAE33081.1| unnamed protein product [Mus musculus]
gi|109659305|gb|AAI18094.1| F-box and leucine-rich repeat protein 14 [Bos taurus]
gi|119609336|gb|EAW88930.1| F-box and leucine-rich repeat protein 14, isoform CRA_c [Homo
sapiens]
gi|148667199|gb|EDK99615.1| F-box and leucine-rich repeat protein 14 [Mus musculus]
gi|149049602|gb|EDM02056.1| rCG29594 [Rattus norvegicus]
gi|296487055|tpg|DAA29168.1| TPA: F-box/LRR-repeat protein 14 [Bos taurus]
Length = 400
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 111/338 (32%), Positives = 180/338 (53%), Gaps = 48/338 (14%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+ G+ N++SL +S C +TD+G+ + + +GSL LN
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123
Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
L+ C Q++D + ++ + L+VL LG + IT+ L+ + GL L+SLNL SC +
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183
Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
D G+ +L G+ L+ L L D Q + L+H+S GLT L +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243
Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
L L+ + SL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302
Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362
Query: 452 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
+ +RIT GL + L L+ L L ++T ++ R
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKVR 400
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 169/315 (53%), Gaps = 32/315 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324
Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 325 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLP 381
Query: 349 SLKSLNLDARQITDT 363
LK LNL Q+TD+
Sbjct: 382 CLKVLNLGLWQMTDS 396
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 107/337 (31%), Positives = 171/337 (50%), Gaps = 36/337 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A + +A G L L L CQ L+D + S+ + L++LNL F
Sbjct: 180 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 239
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
I+D L+HL + +L SLNL SC I D G+++L G L L++S +VG L +
Sbjct: 240 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 299
Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
++ GL L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT
Sbjct: 300 IAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 359
Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
+DL+G RIT G + L+ L + +TD+
Sbjct: 360 GIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 396
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTD 395
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 34/246 (13%)
Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 322
++G+ N+ESLNL C G+G + + L L C +++D+ +G ++L G
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 144
Query: 323 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 372
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 145 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 200
Query: 373 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 426
GL L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LN
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 259
Query: 427 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 483
L N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++
Sbjct: 260 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319
Query: 484 NDIKRL 489
+ I R+
Sbjct: 320 DGINRM 325
>gi|22748931|ref|NP_689654.1| F-box/LRR-repeat protein 14 [Homo sapiens]
gi|386782025|ref|NP_001247451.1| F-box/LRR-repeat protein 14 [Macaca mulatta]
gi|390467358|ref|XP_003733751.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 2 [Callithrix
jacchus]
gi|402884767|ref|XP_003905846.1| PREDICTED: F-box/LRR-repeat protein 14 [Papio anubis]
gi|441670511|ref|XP_004092204.1| PREDICTED: F-box/LRR-repeat protein 14 [Nomascus leucogenys]
gi|48428083|sp|Q8N1E6.1|FXL14_HUMAN RecName: Full=F-box/LRR-repeat protein 14; AltName: Full=F-box and
leucine-rich repeat protein 14
gi|20381419|gb|AAH28132.1| F-box and leucine-rich repeat protein 14 [Homo sapiens]
gi|119609334|gb|EAW88928.1| F-box and leucine-rich repeat protein 14, isoform CRA_a [Homo
sapiens]
gi|312150528|gb|ADQ31776.1| F-box and leucine-rich repeat protein 14 [synthetic construct]
gi|355563880|gb|EHH20380.1| F-box and leucine-rich repeat protein 14 [Macaca mulatta]
gi|384945426|gb|AFI36318.1| F-box/LRR-repeat protein 14 [Macaca mulatta]
gi|410217776|gb|JAA06107.1| F-box and leucine-rich repeat protein 14 [Pan troglodytes]
Length = 418
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 114/353 (32%), Positives = 184/353 (52%), Gaps = 50/353 (14%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+ G+ N++SL +S C +TD+G+ + + +GSL LN
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123
Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
L+ C Q++D + ++ + L+VL LG + IT+ L+ + GL L+SLNL SC +
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183
Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
D G+ +L G+ L+ L L D Q + L+H+S GLT L +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243
Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
L L+ + SL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302
Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362
Query: 452 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 503
+ +RIT GL + L L+ L L ++T D ++ D L + R
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMT--DSEKEARGDFSPLFTVRTR 413
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 110/348 (31%), Positives = 175/348 (50%), Gaps = 36/348 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A + +A G L L L CQ L+D + S+ + L++LNL F
Sbjct: 180 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 239
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
I+D L+HL + +L SLNL SC I D G+++L G L L++S +VG L +
Sbjct: 240 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 299
Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
++ GL L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT
Sbjct: 300 IAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 359
Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
+DL+G RIT G + L+ L + +TD+ + D S L
Sbjct: 360 GIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKEARGDFSPL 407
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 169/315 (53%), Gaps = 32/315 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324
Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 325 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLP 381
Query: 349 SLKSLNLDARQITDT 363
LK LNL Q+TD+
Sbjct: 382 CLKVLNLGLWQMTDS 396
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTD 395
>gi|281349609|gb|EFB25193.1| hypothetical protein PANDA_001999 [Ailuropoda melanoleuca]
Length = 398
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 110/335 (32%), Positives = 179/335 (53%), Gaps = 48/335 (14%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+ G+ N++SL +S C +TD+G+ + + +GSL LN
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123
Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
L+ C Q++D + ++ + L+VL LG + IT+ L+ + GL L+SLNL SC +
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183
Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
D G+ +L G+ L+ L L D Q + L+H+S GLT L +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243
Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
L L+ + SL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302
Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362
Query: 452 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 485
+ +RIT GL + L L+ L L ++T ++
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSE 397
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 169/315 (53%), Gaps = 32/315 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324
Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 325 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLP 381
Query: 349 SLKSLNLDARQITDT 363
LK LNL Q+TD+
Sbjct: 382 CLKVLNLGLWQMTDS 396
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 107/337 (31%), Positives = 171/337 (50%), Gaps = 36/337 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A + +A G L L L CQ L+D + S+ + L++LNL F
Sbjct: 180 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 239
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
I+D L+HL + +L SLNL SC I D G+++L G L L++S +VG L +
Sbjct: 240 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 299
Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
++ GL L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT
Sbjct: 300 IAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 359
Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
+DL+G RIT G + L+ L + +TD+
Sbjct: 360 GIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 396
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTD 395
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 34/246 (13%)
Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 322
++G+ N+ESLNL C G+G + + L L C +++D+ +G ++L G
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 144
Query: 323 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 372
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 145 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 200
Query: 373 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 426
GL L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LN
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 259
Query: 427 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 483
L N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++
Sbjct: 260 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319
Query: 484 NDIKRL 489
+ I R+
Sbjct: 320 DGINRM 325
>gi|51850103|dbj|BAD42392.1| leucine-rich repeat protein [Ralstonia solanacearum]
Length = 621
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 112/374 (29%), Positives = 166/374 (44%), Gaps = 29/374 (7%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G+ D+ +A+ S+ S+DLS + + G L D L SL+ + +I D G L
Sbjct: 224 GIGDRAAQALAAS-RSIRSLDLSVNMIGCDGAQALADAP-LVSLNL-YSNEIGDDGARAL 280
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
LTSL RRN I G AFA L KL+L G L G L L++
Sbjct: 281 ATSQTLTSLELRRN-GIGNAGAGAFANNTVLRKLNLANNMIDKRGARVLAGNTSLTELDL 339
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI------AYLKGLQ------------ 204
N + D + L+G +L SL++ ++++D G+ A L+ L
Sbjct: 340 G-GNRLGDKGARALAGNRSLLSLKVDHNEISDEGVQALAQHATLRSLDLSFNFVGLQGAG 398
Query: 205 ------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
+L+ LNL C + + +L+ SL L LN ++ DDG +K +L +L+
Sbjct: 399 ALGGNTRLSELNLSLCGINSYSASALARNKSLASLYLNGNRIGDDGARALAKNSTLTLLD 458
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
L N I + L G L SL L GI D+G L L L+LS ++GS G R
Sbjct: 459 LSRNNIQNAGAEALGGNQALISLKLAGNGIDDDGAAALARHPRLTTLDLSQNRIGSEGAR 518
Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
HL+ L ++LS I + L+ + L +L + I + G AL T LT LD
Sbjct: 519 HLAQSATLAELDLSENRIGPEGAKALSLSTVLTTLKVIDNAIGEDGARALADSTSLTSLD 578
Query: 379 LFGARITDSGAAYL 392
I ++GA L
Sbjct: 579 ARRNGIGEAGAQVL 592
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 154/507 (30%), Positives = 218/507 (42%), Gaps = 29/507 (5%)
Query: 2 LPRDISQQI--FNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSL 59
LP ++ QQI R + EVSLE R+ + + + ++D M S +L
Sbjct: 89 LPPELWQQIATLAGARPRRAMREVSLE-LRNASRAVVT---HLTISDPAMFRQLSLYPAL 144
Query: 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI--QISDGGLEHLRGLSNLTSLSFRRNN 117
SV G+ +T L L L+ L+ C IS GL HL + L SL+
Sbjct: 145 KSVRFKGA-LTLEALKALPPT--LEHLEIGRCTGSAISAEGLAHLAAMP-LKSLNLN-GI 199
Query: 118 AITAQGMKAFAGLINLVKLDLERC---TRIHGGLVNLKGLMKLE-SLNIKWCNCITDSDM 173
I +G + A +LV L L C R L + + L+ S+N+ C+
Sbjct: 200 EIGVEGARTLATSKSLVSLSLIGCGIGDRAAQALAASRSIRSLDLSVNMIGCDGAQALAD 259
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
PL SL + +++ D G L Q LT L L + A + + L L
Sbjct: 260 APLV------SLNLYSNEIGDDGARALATSQTLTSLELRRNGIGNAGAGAFANNTVLRKL 313
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
NL + G + SL L+LG N + D+ L G +L SL +D I DEG+
Sbjct: 314 NLANNMIDKRGARVLAGNTSLTELDLGGNRLGDKGARALAGNRSLLSLKVDHNEISDEGV 373
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L L+ L+LS VG G L G T L +NLS GI+ S LA SL SL
Sbjct: 374 QALAQHATLRSLDLSFNFVGLQGAGALGGNTRLSELNLSLCGINSYSASALARNKSLASL 433
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
L+ +I D G AL + LT LDL I ++GA L + L SL++ G G+ D G
Sbjct: 434 YLNGNRIGDDGARALAKNSTLTLLDLSRNNIQNAGAEALGGNQALISLKLAGNGIDDDGA 493
Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 473
+ LT L+LSQN ++ L T L L++S +RI G + L S
Sbjct: 494 AALARHPRLTTLDLSQNRIGSEGARHLAQSAT-LAELDLSENRIGPEGAKALS-----LS 547
Query: 474 LTLESCKVTANDIKRLQSRDLPNLVSF 500
L + KV N I +R L + S
Sbjct: 548 TVLTTLKVIDNAIGEDGARALADSTSL 574
>gi|361069065|gb|AEW08844.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137600|gb|AFG49921.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137602|gb|AFG49922.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137604|gb|AFG49923.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137606|gb|AFG49924.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137608|gb|AFG49925.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137610|gb|AFG49926.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137612|gb|AFG49927.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137614|gb|AFG49928.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137616|gb|AFG49929.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137618|gb|AFG49930.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137620|gb|AFG49931.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137622|gb|AFG49932.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137624|gb|AFG49933.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137626|gb|AFG49934.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137628|gb|AFG49935.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137630|gb|AFG49936.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137632|gb|AFG49937.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137634|gb|AFG49938.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
Length = 73
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 59/73 (80%), Gaps = 1/73 (1%)
Query: 429 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
QN +LTD LE +SG+T LVSLNVSN+R+T+ GL+HL+PLKNL SL+L++CKVT +IK+
Sbjct: 1 QNSHLTDGALEFVSGMTALVSLNVSNTRVTNTGLQHLRPLKNLTSLSLQACKVTWPEIKK 60
Query: 489 LQSRDLPNLVSFR 501
LQ+ LPNL R
Sbjct: 61 LQA-TLPNLAGVR 72
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 40/59 (67%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
+TD ++ +SG+T L SL +S ++VT++G+ +L+ L+ LT L+L+ C VT + L A
Sbjct: 5 LTDGALEFVSGMTALVSLNVSNTRVTNTGLQHLRPLKNLTSLSLQACKVTWPEIKKLQA 63
>gi|290991518|ref|XP_002678382.1| predicted protein [Naegleria gruberi]
gi|284091994|gb|EFC45638.1| predicted protein [Naegleria gruberi]
Length = 344
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 96/362 (26%), Positives = 159/362 (43%), Gaps = 51/362 (14%)
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
NN IT++G + F L L+KLD+ GG I D MK
Sbjct: 11 NNPITSKGAEYFTNLKQLIKLDI-------GGTE------------------IGDEGMKS 45
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQK-LTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+ + L L++ +K+ D GI L L LT L + + +L L L YL+
Sbjct: 46 IGKMKQLTKLEMCGNKIGDEGIKALSNLNSSLTHLCVRKNNIGQEGAKTLKHLTRLNYLD 105
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+ + +L + G ++ S++ L L + N I DE + + L L + IGD G +
Sbjct: 106 IRKNKLGNQGAKEISELPQLTRLFICKNNIGDEGAKAIGEIQTLTQLVMSENPIGDGGAI 165
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
+++ L +LK L + T V + G++ + + L +++ + ++ + L+ L L
Sbjct: 166 SVSQLRHLKTLCIQWTNVRTEGIKAICNMKQLTCLHIQSNKLGFDDIKPIGQLNQLTRLL 225
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
+ QI D+G ++ L LT+L ++ + I GA L KNL
Sbjct: 226 ISDNQIGDSGAKIISELNQLTNLRIYDSNIGIEGAKSLSGMKNL---------------- 269
Query: 415 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
T LNLS N + +K LE ISG+ L L+V + I G ++L + NLR L
Sbjct: 270 --------TKLNLSGN-KIGNKGLEAISGMLQLQKLSVIHCEIGDEGAKYLLNMPNLRKL 320
Query: 475 TL 476
+
Sbjct: 321 YI 322
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 128/283 (45%), Gaps = 8/283 (2%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+ + T LN+ P+T+ + + L L L++ ++ D+G + K+ L L + N
Sbjct: 1 MTQFTELNVFNNPITSKGAEYFTNLKQLIKLDIGGTEIGDEGMKSIGKMKQLTKLEMCGN 60
Query: 263 EITDECLVHLKGLTNLES----LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
+I DE +K L+NL S L + IG EG L L L L++ ++G+ G +
Sbjct: 61 KIGDEG---IKALSNLNSSLTHLCVRKNNIGQEGAKTLKHLTRLNYLDIRKNKLGNQGAK 117
Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
+S L L + + I D + + + +L L + I D G +++ L L L
Sbjct: 118 EISELPQLTRLFICKNNIGDEGAKAIGEIQTLTQLVMSENPIGDGGAISVSQLRHLKTLC 177
Query: 379 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 438
+ + G + N K L L I L +K I L+ LT L +S N + D
Sbjct: 178 IQWTNVRTEGIKAICNMKQLTCLHIQSNKLGFDDIKPIGQLNQLTRLLISDN-QIGDSGA 236
Query: 439 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
++IS L L +L + +S I G + L +KNL L L K+
Sbjct: 237 KIISELNQLTNLRIYDSNIGIEGAKSLSGMKNLTKLNLSGNKI 279
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 147/320 (45%), Gaps = 4/320 (1%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+T L + + +T G Y L++L L++ G + + S+ + L L +
Sbjct: 1 MTQFTELNVFNNPITSKGAEYFTNLKQLIKLDIGGTEIGDEGMKSIGKMKQLTKLEMCGN 60
Query: 239 QLSDDGCEKFSKIGS-LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
++ D+G + S + S L L + N I E LK LT L L++ +G++G ++
Sbjct: 61 KIGDEGIKALSNLNSSLTHLCVRKNNIGQEGAKTLKHLTRLNYLDIRKNKLGNQGAKEIS 120
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
L L L + +G G + + + L + +S I DG ++ L LK+L +
Sbjct: 121 ELPQLTRLFICKNNIGDEGAKAIGEIQTLTQLVMSENPIGDGGAISVSQLRHLKTLCIQW 180
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
+ G+ A+ ++ LT L + ++ + L L I + D+G K I
Sbjct: 181 TNVRTEGIKAICNMKQLTCLHIQSNKLGFDDIKPIGQLNQLTRLLISDNQIGDSGAKIIS 240
Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 477
+L+ LT L + + N+ + + +SG+ L LN+S ++I + GL + + L+ L++
Sbjct: 241 ELNQLTNLRIY-DSNIGIEGAKSLSGMKNLTKLNLSGNKIGNKGLEAISGMLQLQKLSVI 299
Query: 478 SCKVTANDIKRLQSRDLPNL 497
C++ K L ++PNL
Sbjct: 300 HCEIGDEGAKYL--LNMPNL 317
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 91/363 (25%), Positives = 151/363 (41%), Gaps = 55/363 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGL-SNLTSLSFR 114
L+ +D+ G+++ D G+ + L L+ C +I D G++ L L S+LT L R
Sbjct: 26 KQLIKLDIGGTEIGDEGMKSIGKMKQLTKLEM--CGNKIGDEGIKALSNLNSSLTHLCVR 83
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+NN I +G K L L LD+ + N + + K
Sbjct: 84 KNN-IGQEGAKTLKHLTRLNYLDIRK-------------------------NKLGNQGAK 117
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+S L L L I + + D G + +Q LT L + P+ S+S L L L
Sbjct: 118 EISELPQLTRLFICKNNIGDEGAKAIGEIQTLTQLVMSENPIGDGGAISVSQLRHLKTLC 177
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+ + +G + + L L++ N++ + + + L L L + IGD G
Sbjct: 178 IQWTNVRTEGIKAICNMKQLTCLHIQSNKLGFDDIKPIGQLNQLTRLLISDNQIGDSGAK 237
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
++ L L L + D+ +G G + LSG+ NL +NLS I + L ++G+ L+ L+
Sbjct: 238 IISELNQLTNLRIYDSNIGIEGAKSLSGMKNLTKLNLSGNKIGNKGLEAISGMLQLQKLS 297
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
+ I D GA YL N NLR L I G ++D +K
Sbjct: 298 ------------------------VIHCEIGDEGAKYLLNMPNLRKLYI-GDDISDRIIK 332
Query: 415 HIK 417
++
Sbjct: 333 ELR 335
>gi|332249163|ref|XP_003273734.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 2 [Nomascus
leucogenys]
gi|119609335|gb|EAW88929.1| F-box and leucine-rich repeat protein 14, isoform CRA_b [Homo
sapiens]
Length = 401
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 110/335 (32%), Positives = 179/335 (53%), Gaps = 48/335 (14%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+ G+ N++SL +S C +TD+G+ + + +GSL LN
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123
Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
L+ C Q++D + ++ + L+VL LG + IT+ L+ + GL L+SLNL SC +
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183
Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
D G+ +L G+ L+ L L D Q + L+H+S GLT L +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243
Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
L L+ + SL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302
Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362
Query: 452 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 485
+ +RIT GL + L L+ L L ++T ++
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSE 397
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 169/315 (53%), Gaps = 32/315 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324
Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 325 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLP 381
Query: 349 SLKSLNLDARQITDT 363
LK LNL Q+TD+
Sbjct: 382 CLKVLNLGLWQMTDS 396
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 107/337 (31%), Positives = 171/337 (50%), Gaps = 36/337 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A + +A G L L L CQ L+D + S+ + L++LNL F
Sbjct: 180 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 239
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
I+D L+HL + +L SLNL SC I D G+++L G L L++S +VG L +
Sbjct: 240 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 299
Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
++ GL L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT
Sbjct: 300 IAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 359
Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
+DL+G RIT G + L+ L + +TD+
Sbjct: 360 GIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 396
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 371
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 372 RGLERITQLPCLKVLNLGLWQMTD 395
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 34/246 (13%)
Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 322
++G+ N+ESLNL C G+G + + L L C +++D+ +G ++L G
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 144
Query: 323 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 372
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 145 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 200
Query: 373 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 426
GL L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LN
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 259
Query: 427 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 483
L N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++
Sbjct: 260 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319
Query: 484 NDIKRL 489
+ I R+
Sbjct: 320 DGINRM 325
>gi|343415517|emb|CCD20643.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
Length = 1289
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 124/434 (28%), Positives = 185/434 (42%), Gaps = 41/434 (9%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L L S D L ++ C LQ+L + C I+D + L L +L SL R
Sbjct: 550 LKQFHLRDSSAGDDALEYITACQQLQALVLHRCSSITD--ISPLSDLQSLVSLDIRECMN 607
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I +G F L L L L + L +L +L+ L + CN ITD+ + L
Sbjct: 608 IV-EGWNCFMRLRMLKMLHLLEARVSNDSLRSLAACTQLQVLVLHRCNNITDTSL--LGS 664
Query: 179 LTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L L+ L + CS ++ G AYL L L + L G + + + L+ + L L
Sbjct: 665 LQYLQVLDVRECSGIS-QGCAYLNNLPYLRAMQLRGLVMNGSFVHRLANQRHIRVLMLQP 723
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
C D + L L LE L+L CG + G L
Sbjct: 724 CVFISD-------------------------ISPLWHLRELEVLSLCHCGRIERGWDALG 758
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLD 356
GL LK L + G+ LR L T+L S+ L S GISD + L +S L+ L++D
Sbjct: 759 GLEKLKDLYILKGPFGNDFLRALQRNTHLRSLALYSCPGISD--ISSLGDVSGLEMLDID 816
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVK 414
G L L GL L L R+ S A+ LR+ +NLR LEI C ++ + +
Sbjct: 817 NCAAIRDGWYGLGKLKGLEELYLRQVRLPRSLASVLRSCENLRVLEIFACNPVVSVSALG 876
Query: 415 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
I L L + CN + L + L LV+L++S + ++ + L L+ +L+S+
Sbjct: 877 TINGLEVLVI----DKCNASATELNSLLQLKCLVALHLSEAILSCSFLHGLRSCVHLQSV 932
Query: 475 TLESCKVTANDIKR 488
+ CKV + R
Sbjct: 933 RFDRCKVEKGAVFR 946
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 123/494 (24%), Positives = 199/494 (40%), Gaps = 58/494 (11%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF--RRN 116
L +VD S + V D+ L L S L L C I+D L L G L +L +N
Sbjct: 336 LRAVDFSHTAVNDACLRELGMASGLSELRLEGCPCITD--LSSLSGSPVLKTLVLGGDKN 393
Query: 117 NAITAQGMKAFAGLINLVKL----DLERCTR-----------IHGGLVNLKGLMKLESLN 161
+ G+ + + + D ER TR G N++ + L S+
Sbjct: 394 SVGGVCGVTQMYSSLESIDVRYSRDAERFTRRISDRYGERSSYRCGCKNIRNITPLGSIG 453
Query: 162 ----IKWCNCITDSD-MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
+ C C + + L L L+ L++ + + + I L +L +L LE C
Sbjct: 454 RLEVLDLCGCTNIAHGWQRLPQLNYLRELRVGGAGINNKFIQMLGAHGRLRVLVLEYCNN 513
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
+ L + L L + C G +++ LK +L + D+ L ++
Sbjct: 514 ITD-ISPLGYIRGLEVLGICECTSVKGGWSCLARLCMLKQFHLRDSSAGDDALEYITACQ 572
Query: 277 NLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
L++L L C I D + L+ L +L L++ + G L L+ ++L
Sbjct: 573 QLQALVLHRCSSITD--ISPLSDLQSLVSLDIRECMNIVEGWNCFMRLRMLKMLHLLEAR 630
Query: 336 ISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
+S+ SLR LA + L+ L L ITDT L L SL L LD+ G AYL N
Sbjct: 631 VSNDSLRSLAACTQLQVLVLHRCNNITDTSL--LGSLQYLQVLDVRECSGISQGCAYLNN 688
Query: 395 FKNLRSLEICG----GGLTD--AGVKHIK-----------DLSSLTLLNLSQ-----NCN 432
LR++++ G G A +HI+ D+S L L + +C
Sbjct: 689 LPYLRAMQLRGLVMNGSFVHRLANQRHIRVLMLQPCVFISDISPLWHLRELEVLSLCHCG 748
Query: 433 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN-----DIK 487
++ + + GL L L + + LR L+ +LRSL L SC ++ D+
Sbjct: 749 RIERGWDALGGLEKLKDLYILKGPFGNDFLRALQRNTHLRSLALYSCPGISDISSLGDVS 808
Query: 488 RLQSRDLPNLVSFR 501
L+ D+ N + R
Sbjct: 809 GLEMLDIDNCAAIR 822
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 114/442 (25%), Positives = 189/442 (42%), Gaps = 43/442 (9%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDG-----GLEHLRGL---------SNLTSLSF 113
++TD+ L L LQ LD C IS G L +LR + S + L+
Sbjct: 655 NITDTSL--LGSLQYLQVLDVRECSGISQGCAYLNNLPYLRAMQLRGLVMNGSFVHRLAN 712
Query: 114 RRN-------NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
+R+ + + L L L L C RI G L GL KL+ L I
Sbjct: 713 QRHIRVLMLQPCVFISDISPLWHLRELEVLSLCHCGRIERGWDALGGLEKLKDLYI-LKG 771
Query: 167 CITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+ ++ L T+L+SL + SC ++D I+ L + L +L+++ C L
Sbjct: 772 PFGNDFLRALQRNTHLRSLALYSCPGISD--ISSLGDVSGLEMLDIDNCAAIRDGWYGLG 829
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLD 284
L L L L + +L +L+VL + N + + L + LE L +D
Sbjct: 830 KLKGLEELYLRQVRLPRSLASVLRSCENLRVLEIFACNPVVS--VSALGTINGLEVLVID 887
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RK 343
C L +L L L L LS+ + S L L +L+S+ + G++ R
Sbjct: 888 KCNASATELNSLLQLKCLVALHLSEAILSCSFLHGLRSCVHLQSVRFDRCKVEKGAVFRS 947
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK---NLRS 400
GLS L +L +++ AL+ + + + F +I A+L K +LR+
Sbjct: 948 HHGLSVLDFTSLGKKRVN-----ALSFFSQVKPSE-FRLQIKSLNKAFLCTLKLNTHLRT 1001
Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
L + T+ V + D+ +L +L+L C+ L + L GL +L +++ + +
Sbjct: 1002 LMLYQCYFTN--VSPLGDIKTLEVLDLD-GCSRIRSGLTDLHKLVGLKTLRLASRGVCDS 1058
Query: 461 GLRHLKPLKNLRSLTLESCKVT 482
L L LK+LRSL+L C++T
Sbjct: 1059 FLDGLAKLKHLRSLSLIGCRIT 1080
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 115/438 (26%), Positives = 183/438 (41%), Gaps = 49/438 (11%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDG-----GLEHLRGLSNLTS-------LSFRRNNAI 119
S L HL++ L+ L C +I G GLE L+ L L + +RN +
Sbjct: 731 SPLWHLRE---LEVLSLCHCGRIERGWDALGGLEKLKDLYILKGPFGNDFLRALQRNTHL 787
Query: 120 TAQGMKAFAGLIN---------LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
+ + + G+ + L LD++ C I G L L LE L ++ +
Sbjct: 788 RSLALYSCPGISDISSLGDVSGLEMLDIDNCAAIRDGWYGLGKLKGLEELYLRQVR-LPR 846
Query: 171 SDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
S L NL+ L+I +C+ V ++ L + L +L ++ C +A L+SL L
Sbjct: 847 SLASVLRSCENLRVLEIFACNPVVS--VSALGTINGLEVLVIDKCNASATELNSLLQLKC 904
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGS-LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
L L+L+ LS C + S + + ++ F+ E + L L+ S +
Sbjct: 905 LVALHLSEAILS---CSFLHGLRSCVHLQSVRFDRCKVEKGAVFRSHHGLSVLDFTS--L 959
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL---TNLESINLS---FTGISDGSLR 342
G + + L+ +K E Q+ S L L T+L ++ L FT +S
Sbjct: 960 GKKRVNALSFFSQVKPSEFR-LQIKSLNKAFLCTLKLNTHLRTLMLYQCYFTNVS----- 1013
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
L + +L+ L+LD +GL L L GL L L + DS L K+LRSL
Sbjct: 1014 PLGDIKTLEVLDLDGCSRIRSGLTDLHKLVGLKTLRLASRGVCDSFLDGLAKLKHLRSLS 1073
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G +TD V + + L L+LS C +K + I + L L + RI
Sbjct: 1074 LIGCRITD--VSELGRIHWLEALDLSY-CTKINKGWKCIGEIKSLKELTLRGCRIYYPLF 1130
Query: 463 RHLKPLKNLRSLTLESCK 480
L LR L+L+ CK
Sbjct: 1131 YALNGSDTLRKLSLKYCK 1148
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 120/271 (44%), Gaps = 35/271 (12%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLS--NLTSLSFRRN 116
L+++ LS + ++ S L L+ C +LQS+ F+ C GLS + TSL +R
Sbjct: 905 LVALHLSEAILSCSFLHGLRSCVHLQSVRFDRCKVEKGAVFRSHHGLSVLDFTSLGKKRV 964
Query: 117 NAITAQGM--------------KAFAGLI----NLVKLDLERCTRIHGGLVNLKGLMKLE 158
NA++ KAF + +L L L +C + L + LE
Sbjct: 965 NALSFFSQVKPSEFRLQIKSLNKAFLCTLKLNTHLRTLMLYQC--YFTNVSPLGDIKTLE 1022
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
L++ C+ I S + L L LK+L+++ V DS + L L+ L L+L GC +T
Sbjct: 1023 VLDLDGCSRIR-SGLTDLHKLVGLKTLRLASRGVCDSFLDGLAKLKHLRSLSLIGCRIT- 1080
Query: 219 ACLDSLSALGSLFY---LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+S LG + + L+L+ C + G + +I SLK L L I L G
Sbjct: 1081 ----DVSELGRIHWLEALDLSYCTKINKGWKCIGEIKSLKELTLRGCRIYYPLFYALNGS 1136
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
L L+L C +GL ++ L + LE
Sbjct: 1137 DTLRKLSLKYC----KGLTDVYPLGAIHMLE 1163
>gi|343413823|emb|CCD21194.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
Length = 707
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 133/406 (32%), Positives = 209/406 (51%), Gaps = 39/406 (9%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L + S+L++LD + C I+D + L LS+L +L IT + + L +L L
Sbjct: 177 LSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTGIT--DVSPLSKLSSLRTL 232
Query: 137 DLERCTRIHGGLVNLKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD 194
DL CT G+ ++ L KL SL + +C +D+ PLS L++L++L +S C+ +TD
Sbjct: 233 DLSHCT----GITDVSPLSKLSSLRTLDLSHCTGITDVSPLSELSSLRTLGLSHCTGITD 288
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
++ L L L L+L C + LS L SL L+L+ C D SK+ SL
Sbjct: 289 --VSPLSELSSLRTLDLSHC-TGITDVSPLSELSSLRTLDLSHCTGITD-VSPLSKLSSL 344
Query: 255 KVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQV 312
+ L + ITD + L L++L +L C GI D + L+ L L+ L LS
Sbjct: 345 RTLYFLYCTGITD--VSPLSELSSLRTLYFSHCTGITD--VSPLSELSGLRMLYLSHCT- 399
Query: 313 GSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTS 370
G + + LS ++L ++ S TGI+D S L+ LSSL++L+L ITD ++ L+
Sbjct: 400 GITDVSPLSVFSSLRMLDFSHCTGITDVS--PLSKLSSLRTLDLSHCTGITD--VSPLSE 455
Query: 371 LTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLS 428
L+ L LDL ITD + L +LR+L++ G+TD V + +LSSL L+LS
Sbjct: 456 LSSLHTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLCTLDLS 511
Query: 429 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
+TD + +S L+ L +L++S+ G+ + PL SL
Sbjct: 512 HCTGITD--VSPLSELSSLRTLDLSH----CTGITDVSPLSEFSSL 551
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 148/451 (32%), Positives = 230/451 (50%), Gaps = 43/451 (9%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
+L+ L L G+ D S+ SSL ++DLS + +TD + L S+L++LD +
Sbjct: 205 SLRTLDLSHCTGITDVSP---LSKLSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSH 259
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
C I+D + L LS+L +L IT + + L +L LDL CT I +
Sbjct: 260 CTGITD--VSPLSELSSLRTLGLSHCTGIT--DVSPLSELSSLRTLDLSHCTGI-TDVSP 314
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAYLKGLQKLTLL 209
L L L +L++ C ITD + PLS L++L++L + C+ +TD ++ L L L L
Sbjct: 315 LSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLYFLYCTGITD--VSPLSELSSLRTL 370
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDEC 268
C + LS L L L L+ C D S SL++L+ ITD
Sbjct: 371 YFSHC-TGITDVSPLSELSGLRMLYLSHCTGITD-VSPLSVFSSLRMLDFSHCTGITD-- 426
Query: 269 LVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
+ L L++L +L+L C GI D + L+ L +L L+LS G + + LS L++L
Sbjct: 427 VSPLSKLSSLRTLDLSHCTGITD--VSPLSELSSLHTLDLSHCT-GITDVSPLSELSSLR 483
Query: 328 SINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-I 384
+++LS TGI+D S L+ LSSL +L+L ITD ++ L+ L+ L LDL I
Sbjct: 484 TLDLSHCTGITDVS--PLSELSSLCTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGI 539
Query: 385 TDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
TD + L F +L +L++ G+TD V + +LSSL +LNLS +TD + +S
Sbjct: 540 TD--VSPLSEFSSLHTLDLSHCTGITD--VSPLSELSSLRMLNLSHCTGITD--VSPLSE 593
Query: 444 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
+ L +L++S+ G+ + PL L SL
Sbjct: 594 FSSLHTLDLSH----CTGITDVSPLSKLSSL 620
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 76/144 (52%), Gaps = 13/144 (9%)
Query: 54 SQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
S+ SSL ++DLS + +TD + L + S+L +LD + C I+D + L LS+L L+
Sbjct: 523 SELSSLRTLDLSHCTGITD--VSPLSEFSSLHTLDLSHCTGITD--VSPLSELSSLRMLN 578
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI-KWCNCITDS 171
IT + + +L LDL CT G+ ++ L KL SL+I +C +
Sbjct: 579 LSHCTGIT--DVSPLSEFSSLHTLDLSHCT----GITDVSPLSKLSSLHILGLSHCTGIT 632
Query: 172 DMKPLSGLTNLKSLQIS-CSKVTD 194
D+ PL+ + + L +S C+ +TD
Sbjct: 633 DVSPLTTIIGFEKLYLSNCTGITD 656
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 110/210 (52%), Gaps = 26/210 (12%)
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
L ++L L L C GI D + L+ L +L+ L+LS G + + LS ++LE ++
Sbjct: 16 LSVFSSLRMLYLSHCTGITD--VSPLSKLSSLRTLDLSHCT-GITDVSPLSVFSSLEKLD 72
Query: 331 LSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR----IT 385
LS TGI+D S L+ LSSL++L+L TG+ ++ L+ L+ L G IT
Sbjct: 73 LSHCTGITDVS--PLSKLSSLRTLDLSHC----TGITDVSPLSKLSSLHTLGLSHCTGIT 126
Query: 386 DSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 444
D + L +L +L++ G+TD V + +LSSL L LS +TD + +S L
Sbjct: 127 D--VSPLSKLSSLHTLDLSHCTGITD--VSPLSELSSLRTLGLSHCTGITD--VSPLSEL 180
Query: 445 TGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
+ L +L++S+ G+ + PL L SL
Sbjct: 181 SSLRTLDLSH----CTGITDVSPLSKLSSL 206
>gi|195150157|ref|XP_002016021.1| GL10712 [Drosophila persimilis]
gi|194109868|gb|EDW31911.1| GL10712 [Drosophila persimilis]
Length = 529
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 123/374 (32%), Positives = 189/374 (50%), Gaps = 68/374 (18%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R AL+DL LG +L S++LSG
Sbjct: 193 SPSLFNCLV-RRGIKKVQILSLRR-ALKDLVLGV----------------PALTSLNLSG 234
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAI 119
+V D L H D NL++LD + C QI+D L +HLR NL +L I
Sbjct: 235 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLR---NLENLELGGCCNI 291
Query: 120 TAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCIT 169
T G+ A GL L L+L C I G+ +L G ++LE L ++ C ++
Sbjct: 292 TNTGLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEHLGLQDCQRLS 351
Query: 170 DSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
D + ++ GLT+LKS+ +S C VTDSG+ +L + KL LNL C D++S +
Sbjct: 352 DEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDI 404
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDS 285
G + L++ G S I SL V F ++I+D+ L H+ +GL L SL+L+
Sbjct: 405 GMAY--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQ 449
Query: 286 CGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSL 341
C I D+G+V + L L+ L + +++ GL+ L+ LTNL++I+L T +S +
Sbjct: 450 CQITDQGMVKIAKSLQELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGI 509
Query: 342 RKLAGLSSLKSLNL 355
+ L L+ LNL
Sbjct: 510 DIIMKLPKLQKLNL 523
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 108/340 (31%), Positives = 165/340 (48%), Gaps = 55/340 (16%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
G+ L SLN+ C + D ++ L NLK+L +S C ++TD+ + + + L+ L
Sbjct: 223 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLEN 282
Query: 209 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L GC L L L +LNL C +SD G IG L GF+ T
Sbjct: 283 LELGGCCNITNTGLLLIAWGLKKLRHLNLRSCWHISDQG------IGHLA----GFSRET 332
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLT 324
E +L L+ G+ D C LSD +G H++ GLT
Sbjct: 333 AE-----------GNLQLEHLGLQD-------------CQRLSDEALG-----HIAQGLT 363
Query: 325 NLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-F 380
+L+SINLSF ++D L+ LA + L+ LNL + I+D G+A LT +G+ LD+ F
Sbjct: 364 SLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSF 423
Query: 381 GARITDSGAAYL-RNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTL 438
+I+D ++ + LRSL + +TD G VK K L L LN+ Q +TDK L
Sbjct: 424 CDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMVKIAKSLQELENLNIGQCSRITDKGL 483
Query: 439 E-LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 476
+ L LT L ++++ ++++S G+ + L L+ L L
Sbjct: 484 QTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 523
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 112/209 (53%), Gaps = 16/209 (7%)
Query: 69 VTDSGLIHLKDCS--------NLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAI 119
++D G+ HL S L+ L C ++SD L H+ +GL++L S++ ++
Sbjct: 317 ISDQGIGHLAGFSRETAEGNLQLEHLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSV 376
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLESLNIKWCNCITDSDMKPLS 177
T G+K A + L +L+L C I G+ L +G + SL++ +C+ I+D + ++
Sbjct: 377 TDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIA 436
Query: 178 -GLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSA-LGSLFYL 233
GL L+SL ++ ++TD G+ + K LQ+L LN+ C +T L +L+ L +L +
Sbjct: 437 QGLYRLRSLSLNQCQITDQGMVKIAKSLQELENLNIGQCSRITDKGLQTLAEDLTNLKTI 496
Query: 234 NLNRC-QLSDDGCEKFSKIGSLKVLNLGF 261
+L C QLS G + K+ L+ LNLG
Sbjct: 497 DLYGCTQLSSKGIDIIMKLPKLQKLNLGL 525
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 116/237 (48%), Gaps = 34/237 (14%)
Query: 274 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 324
G+ L SLNL C +G V+L L L C +++DT +G +HL L
Sbjct: 223 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLE 281
Query: 325 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-------- 372
NLE N++ TG+ L GL L+ LNL + I+D G+ L +
Sbjct: 282 NLELGGCCNITNTGL----LLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNL 337
Query: 373 GLTHLDLFG-ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 428
L HL L R++D ++ + +L+S L C +TD+G+KH+ + L LNL
Sbjct: 338 QLEHLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 396
Query: 429 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 482
N++D + L G +G+ SL+VS +I+ L H+ + L LRSL+L C++T
Sbjct: 397 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 453
>gi|320169763|gb|EFW46662.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 684
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 105/388 (27%), Positives = 173/388 (44%), Gaps = 7/388 (1%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLES 159
GL+ L SL F NN IT+ + AF+GL L +L L T I GL L
Sbjct: 53 FSGLTALNSL-FLSNNPITSIAVNAFSGLTALTQLSLAGNPLTTIPDN--TFTGLTALTR 109
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L++ + I +GL L+ L ++ +++T+ GL LT L+L +T+
Sbjct: 110 LDV-YVTQIASISASAFAGLPVLEVLSLNDNQITNIASNTFTGLTALTRLSLFNNNITSI 168
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+ + L +L YL+L Q++ F + L L+L NEIT GLT L
Sbjct: 169 PASAFADLSALTYLDLAGNQMTSLSANAFIGLTELTYLSLTSNEITSISPAAFTGLTALT 228
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L++ I + GL +L L + + Q+ S +GL +L ++L ++
Sbjct: 229 ELVLENNLIASISANDFAGLTSLNLLRMRNNQITSLSANGFAGLPSLTELDLDLNLMTSI 288
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
AGL+SL L++ QIT L LT L L +IT A +L
Sbjct: 289 DASAFAGLTSLNLLSVQNNQITSISANGFAGLPSLTALGLESNQITSISANAFAGLTSLN 348
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G +T ++SL++L+L N +T + +GLT ++ L ++++ T+
Sbjct: 349 FLRLEGNQITSISANAFAAVTSLSVLSLHFN-QITSFSANAFTGLTTMMYLLLNSNPFTT 407
Query: 460 AGLRHLKPLKNLRSLTLESCKVTANDIK 487
+ L+N L+LE ++ N+
Sbjct: 408 LPPGLFQGLQNGLILSLEDSSLSPNNFT 435
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 96/332 (28%), Positives = 141/332 (42%), Gaps = 28/332 (8%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N T SGLT L SL +S + +T + GL LT L+L G P+T ++ +
Sbjct: 43 NLFTSVAANAFSGLTALNSLFLSNNPITSIAVNAFSGLTALTQLSLAGNPLTTIPDNTFT 102
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L +L L++ Q++ F+ + L+VL+L N+IT+
Sbjct: 103 GLTALTRLDVYVTQIASISASAFAGLPVLEVLSLNDNQITN------------------- 143
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
I LT L L + T + +S LS LT L+ L+ ++ S
Sbjct: 144 --IASNTFTGLTALTRLSLFNNNITSIPASAFADLSALTYLD---LAGNQMTSLSANAFI 198
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
GL+ L L+L + +IT AA T LT LT L L I A +L L +
Sbjct: 199 GLTELTYLSLTSNEITSISPAAFTGLTALTELVLENNLIASISANDFAGLTSLNLLRMRN 258
Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
+T L SLT L+L N +T +GLT L L+V N++ITS
Sbjct: 259 NQITSLSANGFAGLPSLTELDLDLNL-MTSIDASAFAGLTSLNLLSVQNNQITSISANGF 317
Query: 466 KPLKNLRSLTLESCKVT---ANDIKRLQSRDL 494
L +L +L LES ++T AN L S +
Sbjct: 318 AGLPSLTALGLESNQITSISANAFAGLTSLNF 349
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 104/238 (43%), Gaps = 4/238 (1%)
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
L L N T GLT L SL L + I + +GL L L L+ + +
Sbjct: 38 LRLHLNLFTSVAANAFSGLTALNSLFLSNNPITSIAVNAFSGLTALTQLSLAGNPLTTIP 97
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
+GLT L +++ T I+ S AGL L+ L+L+ QIT+ T LT LT
Sbjct: 98 DNTFTGLTALTRLDVYVTQIASISASAFAGLPVLEVLSLNDNQITNIASNTFTGLTALTR 157
Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436
L LF IT A+ + L L++ G +T L+ LT L+L+ N +T
Sbjct: 158 LSLFNNNITSIPASAFADLSALTYLDLAGNQMTSLSANAFIGLTELTYLSLTSN-EITSI 216
Query: 437 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT---ANDIKRLQS 491
+ +GLT L L + N+ I S L +L L + + ++T AN L S
Sbjct: 217 SPAAFTGLTALTELVLENNLIASISANDFAGLTSLNLLRMRNNQITSLSANGFAGLPS 274
>gi|343420997|emb|CCD18942.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
Length = 623
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 142/425 (33%), Positives = 215/425 (50%), Gaps = 49/425 (11%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+DV+ LI SNL++LD + C I+D + L +SNL S+ IT +
Sbjct: 7 TDVSPLSLI-----SNLRTLDLSHCTGITD--VLPLSLMSNLCSVYLSHCTGIT--DVPP 57
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
+ L L L+L CT I + L L +LE+LN+ +C IT D+ PLS L+ L++L
Sbjct: 58 LSKLSRLETLNLMYCTGI-TDVSPLSKLSRLETLNLMYCTGIT--DVSPLSKLSRLETLN 114
Query: 187 -ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
+ C+ +TD ++ L + L L+L C L LS + +L L L+ C D
Sbjct: 115 LMYCTGITD--VSPLSLISNLRTLDLSHCTGITDVL-PLSLMSNLCSLYLSHCTGITD-V 170
Query: 246 EKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLK 303
SK+ L+ LNL + ITD + L L+ LE+LNL C GI D ++L NL+
Sbjct: 171 PPLSKLSRLETLNLMYCTGITD--VSPLSKLSRLETLNLMYCTGITDVSPLSLIS--NLR 226
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITD 362
L+LS G + + LS ++NL S+ LS TGI+D + L+ LS L++LNL +
Sbjct: 227 TLDLSHCT-GITDVLPLSLMSNLCSVYLSHCTGITD--VPPLSKLSRLETLNL----MYC 279
Query: 363 TGLAALTSLTGLTHLD----LFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIK 417
TG+ ++ L+ L+ L+ ++ ITD + L NL SL + G+TD V +
Sbjct: 280 TGITDVSPLSKLSRLETLNLMYCTGITD--VSPLSLMSNLCSLYLSHCTGITD--VPPLS 335
Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP---LKNLRSL 474
LS L LNL +TD + +S ++ L L+VS G+ + P L NLR+L
Sbjct: 336 KLSRLETLNLMYCTGITD--VSPLSLMSRLEMLDVSG----CTGITDVSPLSDLSNLRTL 389
Query: 475 TLESC 479
L C
Sbjct: 390 DLSYC 394
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 135/421 (32%), Positives = 199/421 (47%), Gaps = 62/421 (14%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+DV+ LI SNL++LD + C I+D + L +SNL S+ IT +
Sbjct: 214 TDVSPLSLI-----SNLRTLDLSHCTGITD--VLPLSLMSNLCSVYLSHCTGIT--DVPP 264
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
+ L L L+L CT I + L L +LE+LN+ +C ITD + PLS ++NL SL
Sbjct: 265 LSKLSRLETLNLMYCTGI-TDVSPLSKLSRLETLNLMYCTGITD--VSPLSLMSNLCSLY 321
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
+S C+ +TD + L L +L LNL C + LS + L L+++ C D
Sbjct: 322 LSHCTGITD--VPPLSKLSRLETLNLMYCTGITD-VSPLSLMSRLEMLDVSGCTGITD-V 377
Query: 246 EKFSKIGSLKVLNLGF-NEITD-ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
S + +L+ L+L + ITD L + L NL + L S I D L L + L+
Sbjct: 378 SPLSDLSNLRTLDLSYCTGITDVSPLSEIIELANLYMIGLTS--ITDVSL--LKKVKKLE 433
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITD 362
L LS + + LS L+ LE ++L + TGI+D S L+ LS L+ LD R T
Sbjct: 434 VLYLSGCT-SITDVSPLSTLSGLEKLDLRYCTGITDVS--PLSTLSGLE--KLDLRYCTG 488
Query: 363 -TGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKD 418
T ++ L++L+GL LDL G ITD + L L +L++ C G ++D +
Sbjct: 489 ITDVSPLSTLSGLGKLDLSGCTGITD--VSPLSTLSRLETLDLSECPGVMSD-----VDS 541
Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 478
L SL +L L +S I A LR + LK LR+L L
Sbjct: 542 LCSLRMLR----------------------ELRLSRLAINDAVLRDIVVLKCLRTLDLSH 579
Query: 479 C 479
C
Sbjct: 580 C 580
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 124/251 (49%), Gaps = 40/251 (15%)
Query: 62 VDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGG-----LE----HLRGLSNLTSL 111
+D+SG + +TD L D SNL++LD ++C I+D +E ++ GL+++T +
Sbjct: 366 LDVSGCTGITDVS--PLSDLSNLRTLDLSYCTGITDVSPLSEIIELANLYMIGLTSITDV 423
Query: 112 SFRR----------NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
S + + + + + L L KLDL CT I + L L LE L+
Sbjct: 424 SLLKKVKKLEVLYLSGCTSITDVSPLSTLSGLEKLDLRYCTGI-TDVSPLSTLSGLEKLD 482
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+++C ITD + PLS L+ L L +S C+ +TD ++ L L +L L+L CP +
Sbjct: 483 LRYCTGITD--VSPLSTLSGLGKLDLSGCTGITD--VSPLSTLSRLETLDLSECPGVMSD 538
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITD----------ECL 269
+DSL +L L L L+R ++D + L+ L+L ++TD E L
Sbjct: 539 VDSLCSLRMLRELRLSRLAINDAVLRDIVVLKCLRTLDLSHCTDVTDVSPLSTVIRLEVL 598
Query: 270 VHLKGLTNLES 280
V L+G T L S
Sbjct: 599 V-LRGYTGLRS 608
>gi|430741732|ref|YP_007200861.1| hypothetical protein Sinac_0756 [Singulisphaera acidiphila DSM
18658]
gi|430013452|gb|AGA25166.1| hypothetical protein Sinac_0756 [Singulisphaera acidiphila DSM
18658]
Length = 304
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 99/183 (54%), Gaps = 6/183 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL L L+ + + F ++++ GL HL+G ++L SL R IT +G+ A
Sbjct: 113 MTDTGLAQLGGLPRLRQV-YCFKPKVTNAGLAHLKGATHLVSLELLRVPEITDEGLVHLA 171
Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
GL NL KL+L RI G GL +L L +L +L + TD+ + L TNLK L +
Sbjct: 172 GLTNLEKLNLS-GARIAGPGLPHLARLGRLRTLVL---GSTTDAGLAQLGRFTNLKQLYL 227
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
K TD+G+A L L+ LT L LE +T A L ++ L +L L+L +S EK
Sbjct: 228 GTGKYTDAGLAELSKLRSLTELGLEAGDLTEAVLIHVAGLPNLERLDLGGAPVSQAAIEK 287
Query: 248 FSK 250
F +
Sbjct: 288 FKR 290
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 107/216 (49%), Gaps = 4/216 (1%)
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
GS+ L I+DE L L+ L + + D GL L GL L+ + +
Sbjct: 77 GSINPATLPQVPISDEAFTALGMFDQLQELTMVVGVMTDTGLAQLGGLPRLRQVYCFKPK 136
Query: 312 VGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
V ++GL HL G T+L S+ L I+D L LAGL++L+ LNL +I GL L
Sbjct: 137 VTNAGLAHLKGATHLVSLELLRVPEITDEGLVHLAGLTNLEKLNLSGARIAGPGLPHLAR 196
Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
L L L L TD+G A L F NL+ L + G TDAG+ + L SLT L L +
Sbjct: 197 LGRLRTLVL--GSTTDAGLAQLGRFTNLKQLYLGTGKYTDAGLAELSKLRSLTELGL-EA 253
Query: 431 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 466
+LT+ L ++GL L L++ + ++ A + K
Sbjct: 254 GDLTEAVLIHVAGLPNLERLDLGGAPVSQAAIEKFK 289
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 104/209 (49%), Gaps = 3/209 (1%)
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
L P++ +L L L + ++D G + + L+ + ++T+ L
Sbjct: 83 TLPQVPISDEAFTALGMFDQLQELTMVVGVMTDTGLAQLGGLPRLRQVYCFKPKVTNAGL 142
Query: 270 VHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
HLKG T+L SL L I DEGLV+L GL NL+ L LS ++ GL HL+ L L +
Sbjct: 143 AHLKGATHLVSLELLRVPEITDEGLVHLAGLTNLEKLNLSGARIAGPGLPHLARLGRLRT 202
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
+ L T +D L +L ++LK L L + TD GLA L+ L LT L L +T++
Sbjct: 203 LVLGST--TDAGLAQLGRFTNLKQLYLGTGKYTDAGLAELSKLRSLTELGLEAGDLTEAV 260
Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
++ NL L++ G ++ A ++ K
Sbjct: 261 LIHVAGLPNLERLDLGGAPVSQAAIEKFK 289
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 101/233 (43%), Gaps = 28/233 (12%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I+D L L+ L + +TD+G+A L GL +L + VT A L L
Sbjct: 89 ISDEAFTALGMFDQLQELTMVVGVMTDTGLAQLGGLPRLRQVYCFKPKVTNAGLAHLKGA 148
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
L L L R EITDE LVHL GLTNLE LNL
Sbjct: 149 THLVSLELLRVP-----------------------EITDEGLVHLAGLTNLEKLNLSGAR 185
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
I GL +L L L+ L L T +GL L TNL+ + L +D L +L+ L
Sbjct: 186 IAGPGLPHLARLGRLRTLVLGSTT--DAGLAQLGRFTNLKQLYLGTGKYTDAGLAELSKL 243
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
SL L L+A +T+ L + L L LDL GA ++ A + FK R
Sbjct: 244 RSLTELGLEAGDLTEAVLIHVAGLPNLERLDLGGAPVSQ---AAIEKFKRARP 293
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 99/201 (49%), Gaps = 3/201 (1%)
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
GS+ L + +SD+ L+ L + +TD L L GL L +
Sbjct: 77 GSINPATLPQVPISDEAFTALGMFDQLQELTMVVGVMTDTGLAQLGGLPRLRQVYCFKPK 136
Query: 288 IGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
+ + GL +L G +L LEL ++ GL HL+GLTNLE +NLS I+ L LA
Sbjct: 137 VTNAGLAHLKGATHLVSLELLRVPEITDEGLVHLAGLTNLEKLNLSGARIAGPGLPHLAR 196
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
L L++L L + TD GLA L T L L L + TD+G A L ++L L + G
Sbjct: 197 LGRLRTLVLGS--TTDAGLAQLGRFTNLKQLYLGTGKYTDAGLAELSKLRSLTELGLEAG 254
Query: 407 GLTDAGVKHIKDLSSLTLLNL 427
LT+A + H+ L +L L+L
Sbjct: 255 DLTEAVLIHVAGLPNLERLDL 275
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 64/131 (48%)
Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
S+ L I+D AL L L + +TD+G A L LR + +
Sbjct: 78 SINPATLPQVPISDEAFTALGMFDQLQELTMVVGVMTDTGLAQLGGLPRLRQVYCFKPKV 137
Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 468
T+AG+ H+K + L L L + +TD+ L ++GLT L LN+S +RI GL HL L
Sbjct: 138 TNAGLAHLKGATHLVSLELLRVPEITDEGLVHLAGLTNLEKLNLSGARIAGPGLPHLARL 197
Query: 469 KNLRSLTLESC 479
LR+L L S
Sbjct: 198 GRLRTLVLGST 208
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 5/135 (3%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++TD GL+HL +NL+ L+ + +I+ GL HL L L +L + T G+
Sbjct: 160 PEITDEGLVHLAGLTNLEKLNLSGA-RIAGPGLPHLARLGRLRTLVL---GSTTDAGLAQ 215
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
NL +L L GL L L L L ++ +T++ + ++GL NL+ L
Sbjct: 216 LGRFTNLKQLYLGTGKYTDAGLAELSKLRSLTELGLE-AGDLTEAVLIHVAGLPNLERLD 274
Query: 187 ISCSKVTDSGIAYLK 201
+ + V+ + I K
Sbjct: 275 LGGAPVSQAAIEKFK 289
>gi|291392871|ref|XP_002712822.1| PREDICTED: F-box/LRR-repeat protein 14-like [Oryctolagus cuniculus]
Length = 400
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 110/338 (32%), Positives = 180/338 (53%), Gaps = 48/338 (14%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+ G+ N++SL +S C +TD+G+ + + +GSL LN
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123
Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
L+ C Q++D + ++ + L+VL LG + IT+ L+ + GL L++LNL SC +
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKTLNLRSCRHLS 183
Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
D G+ +L G+ L+ L L D Q + L+H+S GLT L +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243
Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
L L+ + SL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302
Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362
Query: 452 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
+ +RIT GL + L L+ L L ++T ++ R
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKVR 400
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 107/337 (31%), Positives = 171/337 (50%), Gaps = 36/337 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKTLNLRSC 179
Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A + +A G L L L CQ L+D + S+ + L++LNL F
Sbjct: 180 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 239
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
I+D L+HL + +L SLNL SC I D G+++L G L L++S +VG L +
Sbjct: 240 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 299
Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
++ GL L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT
Sbjct: 300 IAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 359
Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
+DL+G RIT G + L+ L + +TD+
Sbjct: 360 GIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 396
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 104/331 (31%), Positives = 174/331 (52%), Gaps = 56/331 (16%)
Query: 61 SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
S++LSG ++TD+GL H +++ +L++L+ + C QI+D L +
Sbjct: 94 SLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRI--------------- 138
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
AQ +K L L+L C+ I G L+ GL +L++LN++ C ++D +
Sbjct: 139 ---AQYLKG------LEVLELGGCSNITNTGLLLIAWGLQRLKTLNLRSCRHLSDVGIGH 189
Query: 176 LSGLTN--------LKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSL 224
L+G+T L+ L + C K+TD + ++ +GL L LLNL C ++ A L L
Sbjct: 190 LAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHL 249
Query: 225 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLE 279
S +GSL LNL C +SD G + +GSL++ L++ F +++ D+ L ++ +GL L+
Sbjct: 250 SHMGSLRSLNLRSCDNISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLK 308
Query: 280 SLNLDSCGIGDEGL----VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLS 332
SL+L SC I D+G+ + GL L +C+ ++D + HLS LT ++
Sbjct: 309 SLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC- 366
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
T I+ L ++ L LK LNL Q+TD+
Sbjct: 367 -TRITKRGLERITQLPCLKVLNLGLWQMTDS 396
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 124/246 (50%), Gaps = 34/246 (13%)
Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 322
++G+ N+ESLNL C G+G + + L L C +++D+ +G ++L G
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 144
Query: 323 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 372
L LE N++ TG+ L GL LK+LNL + R ++D G+ L +T
Sbjct: 145 LEVLELGGCSNITNTGL----LLIAWGLQRLKTLNLRSCRHLSDVGIGHLAGMTRSAAEG 200
Query: 373 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 426
GL L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LN
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 259
Query: 427 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 483
L N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++
Sbjct: 260 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319
Query: 484 NDIKRL 489
+ I R+
Sbjct: 320 DGINRM 325
>gi|260804809|ref|XP_002597280.1| hypothetical protein BRAFLDRAFT_260896 [Branchiostoma floridae]
gi|229282543|gb|EEN53292.1| hypothetical protein BRAFLDRAFT_260896 [Branchiostoma floridae]
Length = 398
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 105/324 (32%), Positives = 170/324 (52%), Gaps = 44/324 (13%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLF 231
+ G++N+ SL +S C +TD G+ A+ + + LT LNL C +T + L ++ +
Sbjct: 87 VQGMSNIVSLNLSGCYNLTDIGLSHAFTQDVPSLTELNLSLCKQITDSSLGRIAQ----Y 142
Query: 232 YLNLNRCQLSDDGCEKFSKIG---------SLKVLNL-GFNEITDECLVHLKGLTNLESL 281
NL R L GC + G L+ LNL I+D + HL G++ +
Sbjct: 143 LKNLERLDLG--GCCNITNTGLLLCAWGLLKLRYLNLRSCRHISDVGIGHLSGISKNAA- 199
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFT-GISDG 339
EG ++L LC C +L+D L+H+S GL L+S+NLSF GISDG
Sbjct: 200 ---------EGCLHLEHLCLQDCQKLTDL-----ALKHVSKGLQRLKSLNLSFCCGISDG 245
Query: 340 SLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTG-LTHLDL-FGARITDSGAAYLRN-F 395
+ LA +SSLK LNL + I+D G+A L + ++HLD+ F ++ DS ++ +
Sbjct: 246 GMMYLAKMSSLKELNLRSCDNISDIGIAHLADGSATISHLDVSFCDKVGDSALGHIAHGL 305
Query: 396 KNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVS 453
+L SL + ++D G+ + ++ + LT L++ Q +TDK L LI+ LT L ++++
Sbjct: 306 YHLHSLSLGSCNISDEGLNRMVRSMHELTTLDIGQCYKITDKGLGLIADNLTQLTNIDLY 365
Query: 454 N-SRITSAGLRHLKPLKNLRSLTL 476
++IT+AGL + L L L L
Sbjct: 366 GCTKITTAGLERIMQLPRLSVLNL 389
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 106/327 (32%), Positives = 166/327 (50%), Gaps = 32/327 (9%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC---TRIHGGLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+V L+L C T I + + L
Sbjct: 69 RGIRKVQILSLRRSLSYVVQGMS------NIVSLNLSGCYNLTDIGLSHAFTQDVPSLTE 122
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC-P 215
LN+ C ITDS + ++ L NL+ L + C +T++G+ GL KL LNL C
Sbjct: 123 LNLSLCKQITDSSLGRIAQYLKNLERLDLGGCCNITNTGLLLCAWGLLKLRYLNLRSCRH 182
Query: 216 VTAACLDSLSALGS--------LFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 264
++ + LS + L +L L CQ L+D + SK + LK LNL F I
Sbjct: 183 ISDVGIGHLSGISKNAAEGCLHLEHLCLQDCQKLTDLALKHVSKGLQRLKSLNLSFCCGI 242
Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS 321
+D +++L +++L+ LNL SC I D G+ +L G + L++S +VG S L H++
Sbjct: 243 SDGGMMYLAKMSSLKELNLRSCDNISDIGIAHLADGSATISHLDVSFCDKVGDSALGHIA 302
Query: 322 -GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHL 377
GL +L S++L ISD L R + + L +L++ +ITD GL + +LT LT++
Sbjct: 303 HGLYHLHSLSLGSCNISDEGLNRMVRSMHELTTLDIGQCYKITDKGLGLIADNLTQLTNI 362
Query: 378 DLFG-ARITDSGAAYLRNFKNLRSLEI 403
DL+G +IT +G + L L +
Sbjct: 363 DLYGCTKITTAGLERIMQLPRLSVLNL 389
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 98/303 (32%), Positives = 153/303 (50%), Gaps = 32/303 (10%)
Query: 81 SNLQSLDFNFCIQISDGGLEHL--RGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLD 137
SN+ SL+ + C ++D GL H + + +LT L+ IT + A + NL +LD
Sbjct: 91 SNIVSLNLSGCYNLTDIGLSHAFTQDVPSLTELNLSLCKQITDSSLGRIAQYLKNLERLD 150
Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLKSLQI 187
L C I G L+ GL+KL LN++ C I+D + LSG++ +L+ L +
Sbjct: 151 LGGCCNITNTGLLLCAWGLLKLRYLNLRSCRHISDVGIGHLSGISKNAAEGCLHLEHLCL 210
Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEG-CPVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
C K+TD + ++ KGLQ+L LNL C ++ + L+ + SL LNL C +SD
Sbjct: 211 QDCQKLTDLALKHVSKGLQRLKSLNLSFCCGISDGGMMYLAKMSSLKELNLRSCDNISDI 270
Query: 244 GCEKFSK-IGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL------- 293
G + ++ L++ F +++ D L H+ GL +L SL+L SC I DEGL
Sbjct: 271 GIAHLADGSATISHLDVSFCDKVGDSALGHIAHGLYHLHSLSLGSCNISDEGLNRMVRSM 330
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKS 352
LT L +C +++D +G LT L +I+L T I+ L ++ L L
Sbjct: 331 HELTTLDIGQCYKITDKGLGLIA----DNLTQLTNIDLYGCTKITTAGLERIMQLPRLSV 386
Query: 353 LNL 355
LNL
Sbjct: 387 LNL 389
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 90/174 (51%), Gaps = 7/174 (4%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ K L+SL+ +FC ISDGG+ +L +S+L L+ R + I+ G+
Sbjct: 216 LTDLALKHVSKGLQRLKSLNLSFCCGISDGGMMYLAKMSSLKELNLRSCDNISDIGIAHL 275
Query: 128 A-GLINLVKLDLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + LD+ C ++ + GL L SL++ CN + + + + L +
Sbjct: 276 ADGSATISHLDVSFCDKVGDSALGHIAHGLYHLHSLSLGSCNISDEGLNRMVRSMHELTT 335
Query: 185 LQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNL 235
L I C K+TD G+ + L +LT ++L GC +T A L+ + L L LNL
Sbjct: 336 LDIGQCYKITDKGLGLIADNLTQLTNIDLYGCTKITTAGLERIMQLPRLSVLNL 389
>gi|290991127|ref|XP_002678187.1| predicted protein [Naegleria gruberi]
gi|284091798|gb|EFC45443.1| predicted protein [Naegleria gruberi]
Length = 265
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 124/245 (50%), Gaps = 3/245 (1%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLKGLQKLTL 208
+K L +L+SL I+ I D++ G L L SL IS C + + G+ ++ L KLT
Sbjct: 10 MKKLNQLKSLKIR-SKFIFGEDLRSYIGELKQLNSLNISDCINIGNRGVNVIRELDKLTE 68
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L+++ C + + A+ L L++N C L G K+ + L + N I+D
Sbjct: 69 LHIDNCCIGEKGAKKIGAMQQLRTLSINGCGLGKKGVASVCKLKDMTKLGIRKNHISDSL 128
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
+ + +T L L+ IG EG +++ + NLK L L +G G++++SG+ L S
Sbjct: 129 ALEISQMTKLTELDAGVNDIGPEGAKSISQMTNLKTLLLDFNDIGKEGVKYISGMKQLIS 188
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
+N+S I D ++ ++ + +L L++ + I D G ++ ++ LT LD+ +T G
Sbjct: 189 LNISENDIRDKGVKSISEMKNLTCLSVRSNSIGDEGAKYISEMSNLTQLDISCNVLTQKG 248
Query: 389 AAYLR 393
L+
Sbjct: 249 IKLLQ 253
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 105/209 (50%), Gaps = 3/209 (1%)
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSD-TQVGSSGLRHLSGLTNLESI 329
+K L L+SL + S I E L + G L L L +SD +G+ G+ + L L +
Sbjct: 10 MKKLNQLKSLKIRSKFIFGEDLRSYIGELKQLNSLNISDCINIGNRGVNVIRELDKLTEL 69
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
++ I + +K+ + L++L+++ + G+A++ L +T L + I+DS A
Sbjct: 70 HIDNCCIGEKGAKKIGAMQQLRTLSINGCGLGKKGVASVCKLKDMTKLGIRKNHISDSLA 129
Query: 390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 449
+ L L+ + G K I +++L L L N ++ + ++ ISG+ L+S
Sbjct: 130 LEISQMTKLTELDAGVNDIGPEGAKSISQMTNLKTLLLDFN-DIGKEGVKYISGMKQLIS 188
Query: 450 LNVSNSRITSAGLRHLKPLKNLRSLTLES 478
LN+S + I G++ + +KNL L++ S
Sbjct: 189 LNISENDIRDKGVKSISEMKNLTCLSVRS 217
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 106/231 (45%), Gaps = 31/231 (13%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
++ + L SL+ + CI I + G+ +R L LT L N I +G K + L
Sbjct: 34 YIGELKQLNSLNISDCINIGNRGVNVIRELDKLTELHID-NCCIGEKGAKKIGAMQQLRT 92
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS-------------------DMKP- 175
L + C G+ ++ L + L I+ N I+DS D+ P
Sbjct: 93 LSINGCGLGKKGVASVCKLKDMTKLGIRK-NHISDSLALEISQMTKLTELDAGVNDIGPE 151
Query: 176 ----LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
+S +TNLK+L + + + G+ Y+ G+++L LN+ + + S+S + +L
Sbjct: 152 GAKSISQMTNLKTLLLDFNDIGKEGVKYISGMKQLISLNISENDIRDKGVKSISEMKNLT 211
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
L++ + D+G + S++ +L L++ N +T + + L+ ESLN
Sbjct: 212 CLSVRSNSIGDEGAKYISEMSNLTQLDISCNVLTQKGIKLLQ-----ESLN 257
>gi|410046126|ref|XP_003952131.1| PREDICTED: LOW QUALITY PROTEIN: F-box/LRR-repeat protein 14 [Pan
troglodytes]
Length = 568
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 114/351 (32%), Positives = 184/351 (52%), Gaps = 50/351 (14%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+ G+ N++SL +S C +TD+G+ + + +GSL LN
Sbjct: 236 IQGMANIESLNLSGCYNLTDNGLGHA----------------------FVQEIGSLRALN 273
Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLK-GLTNLESLNLDSC-GIG 289
L+ C Q++D + ++ + L+VL LG + IT+ L+ + GL L+SLNL SC +
Sbjct: 274 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 333
Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISD 338
D G+ +L G+ L+ L L D Q + L+H+S GLT L +NLSF GISD
Sbjct: 334 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 393
Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
L L+ + SL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ +
Sbjct: 394 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 452
Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L ++
Sbjct: 453 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 512
Query: 452 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 501
+ +RIT GL + L L+ L L ++T D ++ D L + R
Sbjct: 513 LYGCTRITKRGLERITQLPCLKVLNLGLWQMT--DSEKEARGDFSPLFTVR 561
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 101/319 (31%), Positives = 170/319 (53%), Gaps = 40/319 (12%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 236 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 295
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 296 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 355
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 356 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 415
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 416 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 474
Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGL----RHLSGLTNLESINLSFTGISDGSLRKL 344
+ GL L +C+ ++D GL HLS LT ++ T I+ L ++
Sbjct: 475 MVRQMHGLRTLNIGQCVRITD-----KGLELIAEHLSQLTGIDLYGC--TRITKRGLERI 527
Query: 345 AGLSSLKSLNLDARQITDT 363
L LK LNL Q+TD+
Sbjct: 528 TQLPCLKVLNLGLWQMTDS 546
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 110/348 (31%), Positives = 175/348 (50%), Gaps = 36/348 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 218 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 271
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 272 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 329
Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A + +A G L L L CQ L+D + S+ + L++LNL F
Sbjct: 330 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 389
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRH 319
I+D L+HL + +L SLNL SC I D G+++L G L L++S +VG L +
Sbjct: 390 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 449
Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
++ GL L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT
Sbjct: 450 IAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 509
Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
+DL+G RIT G + L+ L + +TD+ + D S L
Sbjct: 510 GIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKEARGDFSPL 557
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 365 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 424
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 425 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 484
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 485 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGC-----------------------TRITK 521
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 522 RGLERITQLPCLKVLNLGLWQMTD 545
>gi|315301494|ref|ZP_07872641.1| internalin A, partial [Listeria ivanovii FSL F6-596]
gi|313630136|gb|EFR98122.1| internalin A [Listeria ivanovii FSL F6-596]
Length = 759
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 135/445 (30%), Positives = 210/445 (47%), Gaps = 67/445 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ ++ +L + V+D+ + D + SL+ + + S G+E+L N+T L+F N
Sbjct: 54 AEVVKTNLGKATVSDT--VTQTDLDGITSLEADRNVIKSIAGVEYLN---NVTQLNFSYN 108
Query: 117 NAITAQGMKAFAGLINLVKL-DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+ L NL KL L L L+ L L L + + N ITD + P
Sbjct: 109 Q------ITDLTPLANLSKLTSLVMNNNQVADLTPLQNLTSLTDLTL-FYNKITD--VTP 159
Query: 176 LSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L+ LTNL +L I+ ++++D + I L L+ L++ G VT + L L +L LN
Sbjct: 160 LANLTNLTTLAITGNEISDLTPIGSLTNLEALSI----GNQVT--DIKPLDKLTNLEQLN 213
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
L+ +++D +K+ +L+ L L N+ +D L L LTNL L+L S + D G
Sbjct: 214 LSDNKITD--ISPVAKLINLQSLTLDNNQFSD--LTPLGILTNLTELSLYSNHLSDIGT- 268
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
L L NLK L L D Q+ S L +S LTNL +N+S ISD L+ ++ L++L L
Sbjct: 269 -LASLTNLKKLNLMDNQI--SNLAPISNLTNLTDLNVSTNQISD--LKPISNLTNLTVLQ 323
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
+ Q+ D ++ ++SLT L L L+ +I+D L N L+ L D V
Sbjct: 324 VPTNQVED--ISPISSLTNLDFLTLYSNQISDISP--LENLTKLKQLFFY-----DNKVS 374
Query: 415 HIKDLSSLTLLN-LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 473
+ L++LT L LS N IS LT L L +R+T GL
Sbjct: 375 DVSPLANLTTLQELSAGTNQ-------ISDLTPLAKL----TRLTQLGL----------- 412
Query: 474 LTLESCKVTANDIKRLQSRDLPNLV 498
+ KVT+ +K + +PN V
Sbjct: 413 ---DKQKVTSQPVKYQSNIVVPNAV 434
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 126/390 (32%), Positives = 182/390 (46%), Gaps = 64/390 (16%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++ S + +TD L L + S L SL N Q++D L L+ L++LT L+ N IT
Sbjct: 103 LNFSYNQITD--LTPLANLSKLTSLVMNNN-QVAD--LTPLQNLTSLTDLTLFYN-KIT- 155
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGG----LVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+ A L NL L I G L + L LE+L+I N +TD +KPL
Sbjct: 156 -DVTPLANLTNLTTL------AITGNEISDLTPIGSLTNLEALSI--GNQVTD--IKPLD 204
Query: 178 GLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
LTNL+ L +S +K+TD S +A L LQ LTL N + +T L L +L L+L
Sbjct: 205 KLTNLEQLNLSDNKITDISPVAKLINLQSLTLDNNQFSDLTP-----LGILTNLTELSLY 259
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
LSD G + + +LK LNL N+I++ L + LTNL LN+ + I D L +
Sbjct: 260 SNHLSDIGT--LASLTNLKKLNLMDNQISN--LAPISNLTNLTDLNVSTNQISD--LKPI 313
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS---------------- 340
+ L NL L++ QV + +S LTNL+ + L ISD S
Sbjct: 314 SNLTNLTVLQVPTNQV--EDISPISSLTNLDFLTLYSNQISDISPLENLTKLKQLFFYDN 371
Query: 341 ----LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF- 395
+ LA L++L+ L+ QI+D L L LT LT L L ++T Y N
Sbjct: 372 KVSDVSPLANLTTLQELSAGTNQISD--LTPLAKLTRLTQLGLDKQKVTSQPVKYQSNIV 429
Query: 396 -----KNLRSLEICGGGLTDAGVKHIKDLS 420
KN+ I ++D G D++
Sbjct: 430 VPNAVKNVTGALINPATISDNGTYTNPDIT 459
>gi|290993787|ref|XP_002679514.1| predicted protein [Naegleria gruberi]
gi|284093131|gb|EFC46770.1| predicted protein [Naegleria gruberi]
Length = 282
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 92/325 (28%), Positives = 137/325 (42%), Gaps = 76/325 (23%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+T LKSL + + + D G+ ++ L+ L +LG L RC
Sbjct: 1 ITTLKSLNLHHNNIEDEGVEFISDLK-------------------LESLG------LCRC 35
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI---------- 288
L+ KI SLK L+L N I DEC +L LT+LE L+L I
Sbjct: 36 ALTSKSTSFLCKITSLKKLDLSENIINDECGFYLSMLTDLEELDLHDNSIEGKCFKEFSS 95
Query: 289 ---------------GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
+E ++ L+ +LK L LS +G S + HLS LTNL+ + L+
Sbjct: 96 LKKLKTLKLCQNRISQEEAMIYLSQTVSLKSLNLSQNNIGQSSI-HLSNLTNLKELELNL 154
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
I+ G L + L L+ L + + L+ L L L +FG + + ++
Sbjct: 155 CKITKGGLSFFSNLKKLEILKISQNSLGYDDFEELSHLVRLRILSIFGCGLEKNSTNFIG 214
Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
N K LR+LE+ + DAG L+SL SGL L L +
Sbjct: 215 NIKTLRNLEMFSNNIYDAG------LASL-------------------SGLVNLQILKLD 249
Query: 454 NSRITSAGLRHLKPLKNLRSLTLES 478
++RIT G++HL +K L L L S
Sbjct: 250 STRITDTGIQHLSQMKELEILRLNS 274
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 123/256 (48%), Gaps = 5/256 (1%)
Query: 155 MKLESLNIKWCNC-ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+KLESL + C C +T L +T+LK L +S + + D YL L L L+L
Sbjct: 25 LKLESLGL--CRCALTSKSTSFLCKITSLKKLDLSENIINDECGFYLSMLTDLEELDLHD 82
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNLGFNEITDECLVHL 272
+ C S+L L L L + ++S + + S+ SLK LNL N I +HL
Sbjct: 83 NSIEGKCFKEFSSLKKLKTLKLCQNRISQEEAMIYLSQTVSLKSLNLSQNNIGQSS-IHL 141
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
LTNL+ L L+ C I GL + L L+ L++S +G LS L L +++
Sbjct: 142 SNLTNLKELELNLCKITKGGLSFFSNLKKLEILKISQNSLGYDDFEELSHLVRLRILSIF 201
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
G+ S + + +L++L + + I D GLA+L+ L L L L RITD+G +L
Sbjct: 202 GCGLEKNSTNFIGNIKTLRNLEMFSNNIYDAGLASLSGLVNLQILKLDSTRITDTGIQHL 261
Query: 393 RNFKNLRSLEICGGGL 408
K L L + L
Sbjct: 262 SQMKELEILRLNSNSL 277
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 88/171 (51%), Gaps = 2/171 (1%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
++ L + L+SLN+ N I S + LS LTNLK L+++ K+T G+++ L+KL
Sbjct: 114 AMIYLSQTVSLKSLNLSQNN-IGQSSI-HLSNLTNLKELELNLCKITKGGLSFFSNLKKL 171
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+L + + + LS L L L++ C L + I +L+ L + N I D
Sbjct: 172 EILKISQNSLGYDDFEELSHLVRLRILSIFGCGLEKNSTNFIGNIKTLRNLEMFSNNIYD 231
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
L L GL NL+ L LDS I D G+ +L+ + L+ L L+ +G+ L
Sbjct: 232 AGLASLSGLVNLQILKLDSTRITDTGIQHLSQMKELEILRLNSNSLGNETL 282
>gi|148228501|ref|NP_001083845.1| F-box and leucine-rich repeat protein 14 [Xenopus laevis]
gi|50603939|gb|AAH77430.1| Fbl13 protein [Xenopus laevis]
Length = 400
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 110/338 (32%), Positives = 178/338 (52%), Gaps = 48/338 (14%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+ GL N++SL +S C +TD+G+ + + +GSL LN
Sbjct: 86 IQGLPNIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRTLN 123
Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
L+ C Q++D + ++ + L+VL LG IT+ L+ + GL L+SLNL SC +
Sbjct: 124 LSLCKQVTDSSLGRIAQYLKGLQVLELGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVS 183
Query: 290 DEGLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
D G+ +L G+ +L+ L L D Q + L+H+S GL L +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLSLEQLTLQDCQKLTDLALKHISRGLQGLRVLNLSFCGGISD 243
Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
L L+ + L+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ +
Sbjct: 244 AGLLHLSHMGGLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302
Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L ++
Sbjct: 303 GLYGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362
Query: 452 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
+ +RIT GL + L L+ L L ++T ++ R
Sbjct: 363 LYGCTRITKKGLERITQLPCLKVLNLGLWQMTESEKVR 400
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 99/306 (32%), Positives = 154/306 (50%), Gaps = 32/306 (10%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 203
++GL +ESLN+ C +TD+ + + + +L++L +S C +VTDS + YLKGL
Sbjct: 86 IQGLPNIESLNLSGCYNLTDNGLGHAFVQEIGSLRTLNLSLCKQVTDSSLGRIAQYLKGL 145
Query: 204 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQLSDD-------GCEKFSKIGSL 254
Q +L L GC L L L LNL C+ D G + + G L
Sbjct: 146 Q---VLELGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCL 202
Query: 255 KVLNLGFNE---ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-S 308
+ L + +TD L H+ +GL L LNL C GI D GL++L+ + L+ L L S
Sbjct: 203 SLEQLTLQDCQKLTDLALKHISRGLQGLRVLNLSFCGGISDAGLLHLSHMGGLRSLNLRS 262
Query: 309 DTQVGSSGLRHLS-GLTNLESINLSFT-GISDGSLRKLA-GLSSLKSLNLDARQITDTGL 365
+ +G+ HL+ G L +++SF + D SL +A GL LKSL+L + I+D G+
Sbjct: 263 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLYGLKSLSLCSCHISDDGI 322
Query: 366 AALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSS 421
+ + GL L++ RITD G + + L +++ G +T G++ I L
Sbjct: 323 NRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKKGLERITQLPC 382
Query: 422 LTLLNL 427
L +LNL
Sbjct: 383 LKVLNL 388
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 142/286 (49%), Gaps = 33/286 (11%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
V D + IA L ++L G +++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 130 VTDSSLGRIAQYLKGLQVLELGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVSDVGIGH 189
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L G++ A G ++L +L L+ C ++ L ++ +GL L
Sbjct: 190 LAGMTR-----------------SAAEGCLSLEQLTLQDCQKLTDLALKHISRGLQGLRV 232
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
LN+ +C I+D+ + LS + L+SL + SC ++D+GI +L G +L+ L++ C
Sbjct: 233 LNLSFCGGISDAGLLHLSHMGGLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKV 292
Query: 218 AACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVH 271
SL+ + Y L+L C +SDDG + + + L+ LN+G ITD+ L
Sbjct: 293 GD--QSLAYIAQGLYGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLEL 350
Query: 272 L-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSS 315
+ + L+ L ++L C I +GL +T L LK L L Q+ S
Sbjct: 351 IAEHLSQLTGIDLYGCTRITKKGLERITQLPCLKVLNLGLWQMTES 396
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 123/246 (50%), Gaps = 34/246 (13%)
Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 322
++GL N+ESLNL C G+G + + L L C +++D+ +G ++L G
Sbjct: 86 IQGLPNIESLNLSGCYNLTDNGLGHAFVQEIGSLRTLNLSLCKQVTDSSLGRIA-QYLKG 144
Query: 323 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 372
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 145 LQVLELGGCTNITNTGL----LLIAWGLHGLKSLNLRSCRHVSDVGIGHLAGMTRSAAEG 200
Query: 373 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 426
L L L ++TD ++ R + LR +L CGG ++DAG+ H+ + L LN
Sbjct: 201 CLSLEQLTLQDCQKLTDLALKHISRGLQGLRVLNLSFCGG-ISDAGLLHLSHMGGLRSLN 259
Query: 427 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 483
L N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++
Sbjct: 260 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLYGLKSLSLCSCHISD 319
Query: 484 NDIKRL 489
+ I R+
Sbjct: 320 DGINRM 325
>gi|320167107|gb|EFW44006.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 624
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 112/238 (47%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N IT +GLT L L + +++T GL LT L +T+ D+ +
Sbjct: 68 NSITSISANAFTGLTALTYLSLQYNQITGIPAGTFTGLTALTALFFAYNQITSIPADTFT 127
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L SL YL+L Q++ F+ + +L L+LG N+IT GLT L +L+L +
Sbjct: 128 GLTSLTYLSLQNNQVTSISGTAFTGLTALTSLSLGPNQITSIPADTFTGLTALTTLSLQN 187
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
I TGL L CL Q+ S +G+T+L ++L I+ S A
Sbjct: 188 NQITSISGTAFTGLTALTCLYFGSNQITSIPAGAFTGMTSLTYLSLYLNKITSISANAFA 247
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
GL++L L+L +IT + A T LTGLT L L G +IT ++ N L +L +
Sbjct: 248 GLTALTYLSLFNNKITSIPVGAFTGLTGLTDLYLDGNQITSIPSSSFTNLTALTALAL 305
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 121/284 (42%), Gaps = 33/284 (11%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+T+ ++ + L +L YL+L Q++ F+ + +L L +N+IT GL
Sbjct: 70 ITSISANAFTGLTALTYLSLQYNQITGIPAGTFTGLTALTALFFAYNQITSIPADTFTGL 129
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
T+L L+L + + TGL L L L Q+ S +GLT L +++L
Sbjct: 130 TSLTYLSLQNNQVTSISGTAFTGLTALTSLSLGPNQITSIPADTFTGLTALTTLSLQNNQ 189
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
I+ S GL++L L + QIT A T +T LT+L L+ +IT A
Sbjct: 190 ITSISGTAFTGLTALTCLYFGSNQITSIPAGAFTGMTSLTYLSLYLNKITSISA------ 243
Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 455
L++LT L+L N +T + +GLTGL L + +
Sbjct: 244 ------------------NAFAGLTALTYLSLFNN-KITSIPVGAFTGLTGLTDLYLDGN 284
Query: 456 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS---RDLPN 496
+ITS L L +L L++ N I L + LPN
Sbjct: 285 QITSIPSSSFTNLTALTALALQN-----NPITTLPPGLFKGLPN 323
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 122/284 (42%), Gaps = 31/284 (10%)
Query: 117 NAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N+IT+ AF GL L L L+ + T I G GL L +L + N IT
Sbjct: 68 NSITSISANAFTGLTALTYLSLQYNQITGIPAG--TFTGLTALTALFFAY-NQITSIPAD 124
Query: 175 PLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+GLT+L L + ++VT SG A+ GL LT L+L +T+ D+ + L +L L
Sbjct: 125 TFTGLTSLTYLSLQNNQVTSISGTAF-TGLTALTSLSLGPNQITSIPADTFTGLTALTTL 183
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+L Q++ F+ + +L L G N+IT G+T+L L+L I
Sbjct: 184 SLQNNQITSISGTAFTGLTALTCLYFGSNQITSIPAGAFTGMTSLTYLSLYLNKI----- 238
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
T + ++ L+ LT L N T I G+ L GL+ L
Sbjct: 239 ----------------TSISANAFAGLTALTYLSLFNNKITSIPVGAFTGLTGLTDLY-- 280
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
LD QIT ++ T+LT LT L L IT + N
Sbjct: 281 -LDGNQITSIPSSSFTNLTALTALALQNNPITTLPPGLFKGLPN 323
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 99/243 (40%), Gaps = 6/243 (2%)
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
L L N IT GLT L L+L I TGL L L + Q+ S
Sbjct: 63 LTLDLNSITSISANAFTGLTALTYLSLQYNQITGIPAGTFTGLTALTALFFAYNQITSIP 122
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
+GLT+L ++L ++ S GL++L SL+L QIT T LT LT
Sbjct: 123 ADTFTGLTSLTYLSLQNNQVTSISGTAFTGLTALTSLSLGPNQITSIPADTFTGLTALTT 182
Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436
L L +IT L L +T ++SLT L+L N +T
Sbjct: 183 LSLQNNQITSISGTAFTGLTALTCLYFGSNQITSIPAGAFTGMTSLTYLSLYLN-KITSI 241
Query: 437 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 496
+ +GLT L L++ N++ITS + L L L L+ N I + S N
Sbjct: 242 SANAFAGLTALTYLSLFNNKITSIPVGAFTGLTGLTDLYLD-----GNQITSIPSSSFTN 296
Query: 497 LVS 499
L +
Sbjct: 297 LTA 299
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 68/145 (46%), Gaps = 6/145 (4%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVN 150
QI+ + GL+ LT+LS + NN IT+ AF GL L L + T I G
Sbjct: 165 QITSIPADTFTGLTALTTLSLQ-NNQITSISGTAFTGLTALTCLYFGSNQITSIPAGA-- 221
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
G+ L L++ + N IT +GLT L L + +K+T + GL LT L
Sbjct: 222 FTGMTSLTYLSL-YLNKITSISANAFAGLTALTYLSLFNNKITSIPVGAFTGLTGLTDLY 280
Query: 211 LEGCPVTAACLDSLSALGSLFYLNL 235
L+G +T+ S + L +L L L
Sbjct: 281 LDGNQITSIPSSSFTNLTALTALAL 305
>gi|403286756|ref|XP_003934642.1| PREDICTED: F-box/LRR-repeat protein 14, partial [Saimiri
boliviensis boliviensis]
Length = 349
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 110/335 (32%), Positives = 180/335 (53%), Gaps = 48/335 (14%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+ G+ N++SL +S C +TD+G+ + + +GSL LN
Sbjct: 34 IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 71
Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
L+ C Q++D + ++ + L+VL LG + IT+ L+ + GL L+SLNL SC +
Sbjct: 72 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 131
Query: 290 DEGLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
D G+ +L G+ +L+ L L D Q + L+H+S GLT L +NLSF G ISD
Sbjct: 132 DVGIGHLAGMTRSAAEGCLSLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 191
Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
L L+ + SL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ +
Sbjct: 192 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 250
Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L ++
Sbjct: 251 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 310
Query: 452 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 485
+ +RIT GL + L L+ L L ++T ++
Sbjct: 311 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSE 345
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 108/337 (32%), Positives = 172/337 (51%), Gaps = 36/337 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 16 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 69
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 70 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 127
Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A + +A G SL L L CQ L+D + S+ + L++LNL F
Sbjct: 128 RHLSDVGIGHLAGMTRSAAEGCLSLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 187
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
I+D L+HL + +L SLNL SC I D G+++L G L L++S +VG L +
Sbjct: 188 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 247
Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
++ GL L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT
Sbjct: 248 IAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 307
Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
+DL+G RIT G + L+ L + +TD+
Sbjct: 308 GIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 344
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 170/315 (53%), Gaps = 32/315 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 34 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 93
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T +L+
Sbjct: 94 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLSLE 153
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 154 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 213
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 214 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 272
Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 273 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYG--CTRITKRGLERITQLP 329
Query: 349 SLKSLNLDARQITDT 363
LK LNL Q+TD+
Sbjct: 330 CLKVLNLGLWQMTDS 344
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 163 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 222
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 223 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 282
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 283 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 319
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 320 RGLERITQLPCLKVLNLGLWQMTD 343
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 123/246 (50%), Gaps = 34/246 (13%)
Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 322
++G+ N+ESLNL C G+G + + L L C +++D+ +G ++L G
Sbjct: 34 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 92
Query: 323 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 372
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 93 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 148
Query: 373 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 426
L L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LN
Sbjct: 149 CLSLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 207
Query: 427 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 483
L N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++
Sbjct: 208 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 267
Query: 484 NDIKRL 489
+ I R+
Sbjct: 268 DGINRM 273
>gi|326427049|gb|EGD72619.1| hypothetical protein PTSG_04354 [Salpingoeca sp. ATCC 50818]
Length = 1165
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 110/375 (29%), Positives = 173/375 (46%), Gaps = 66/375 (17%)
Query: 157 LESLNIKWCNCITDSDMKPL-SGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++ L + +TD+ ++ L + L L+I C +T GIA LKG L L+L G
Sbjct: 767 IQHLAFRSSVVVTDAFLRVLGTQFPTLYELEIYDCPMLTFRGIAALKGAPNLASLHLSGA 826
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
T +C+D+L +L L + +LN ++S ++F++ S
Sbjct: 827 -FTDSCVDALMSLHPLEHFSLNGARVS---SQQFARFLSSPTA----------------- 865
Query: 275 LTNLESLNLDSCGIGDEG-LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
T+L+SL L SC D+G L ++ GL +L L LS T V + G L+ L +L S+NLS+
Sbjct: 866 -THLQSLALTSCPALDDGILPSICGLTDLGHLSLSKTPVRAVG--QLASLPHLYSLNLSY 922
Query: 334 TGISDGSLRKLA------------------------GLSSLKSLNLDAR-QITDTGLAAL 368
T S+ + LA G SL L L +R D LA +
Sbjct: 923 TRASEREVGALAAATNMTTLGLFGLNLSSDAYAPWAGHGSLAELTLSSRDSFDDACLAHV 982
Query: 369 TSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD--LSSLTLL 425
+LT +T LDL G ++T G + + L+SL + LTDA + HI L SL
Sbjct: 983 CTLTHVTTLDLSGYYQLTPDGLKAIAAMQQLQSLSLSNTALTDAALLHIGGVGLPSLDTF 1042
Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN---LRSLTLESCKVT 482
++S+ ++TD G + LN+S +RIT+ H L + L++L++E +
Sbjct: 1043 DISRT-DVTDACAPAFKGFAAVARLNLSRTRITNTFF-HAHALNDCAALQTLSIERTHTS 1100
Query: 483 A------NDIKRLQS 491
N + RLQS
Sbjct: 1101 TKGLAELNGLSRLQS 1115
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 96/372 (25%), Positives = 165/372 (44%), Gaps = 33/372 (8%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP +++++ L S++AFR C +Q L V D ++ V+ +Q +L
Sbjct: 736 LPETLAREVMTAAAEKETLNSKSIKAFRSCGIQHLAFRSSVVVTDAFLRVLGTQFPTLYE 795
Query: 62 VDLSGSDV-TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA-I 119
+++ + T G+ LK NL SL + +D ++ L L L S N A +
Sbjct: 796 LEIYDCPMLTFRGIAALKGAPNLASLHLSGA--FTDSCVDALMSLHPLEHFSL--NGARV 851
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
++Q F L T H L+SL + C + D + + GL
Sbjct: 852 SSQQFARF----------LSSPTATH-----------LQSLALTSCPALDDGILPSICGL 890
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
T+L L +S + V + L L L LNL + + +L+A ++ L L
Sbjct: 891 TDLGHLSLSKTPV--RAVGQLASLPHLYSLNLSYTRASEREVGALAAATNMTTLGLFGLN 948
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDS-CGIGDEGLVNLT 297
LS D ++ GSL L L + D CL H+ LT++ +L+L + +GL +
Sbjct: 949 LSSDAYAPWAGHGSLAELTLSSRDSFDDACLAHVCTLTHVTTLDLSGYYQLTPDGLKAIA 1008
Query: 298 GLCNLKCLELSDTQVGSSGLRHLS--GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
+ L+ L LS+T + + L H+ GL +L++ ++S T ++D G +++ LNL
Sbjct: 1009 AMQQLQSLSLSNTALTDAALLHIGGVGLPSLDTFDISRTDVTDACAPAFKGFAAVARLNL 1068
Query: 356 DARQITDTGLAA 367
+IT+T A
Sbjct: 1069 SRTRITNTFFHA 1080
>gi|291000432|ref|XP_002682783.1| predicted protein [Naegleria gruberi]
gi|284096411|gb|EFC50039.1| predicted protein [Naegleria gruberi]
Length = 303
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 99/182 (54%)
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
S++ LK L + N I DE + + L SL++ IGDEG +++ + L L++S
Sbjct: 115 SEMKQLKSLTIDENGIGDEGAKFISEMKQLTSLSVYYNQIGDEGAKSISEMNQLTSLDIS 174
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
Q+G G + + + L S+++ F I + + ++G++ L SL++ +I D G ++
Sbjct: 175 GNQIGDEGAKSIIEVKQLTSLDIYFNQIGEEGAKFISGMNQLTSLDISGNRIGDEGAKSI 234
Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
+ + LT L+++ RI D GA + + K L+SL I G + D K I ++ LT L++S
Sbjct: 235 SGMNQLTSLNVYNNRIGDEGAKSIIDMKQLKSLNIGGNRIGDEEAKSISEMKQLTSLDIS 294
Query: 429 QN 430
N
Sbjct: 295 NN 296
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 103/206 (50%), Gaps = 6/206 (2%)
Query: 211 LEGCPVTAACLDSL------SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
+E + LDS+ S + L L ++ + D+G + S++ L L++ +N+I
Sbjct: 95 IENVKFSRRLLDSIEQAKFISEMKQLKSLTIDENGIGDEGAKFISEMKQLTSLSVYYNQI 154
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
DE + + L SL++ IGDEG ++ + L L++ Q+G G + +SG+
Sbjct: 155 GDEGAKSISEMNQLTSLDISGNQIGDEGAKSIIEVKQLTSLDIYFNQIGEEGAKFISGMN 214
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
L S+++S I D + ++G++ L SLN+ +I D G ++ + L L++ G RI
Sbjct: 215 QLTSLDISGNRIGDEGAKSISGMNQLTSLNVYNNRIGDEGAKSIIDMKQLKSLNIGGNRI 274
Query: 385 TDSGAAYLRNFKNLRSLEICGGGLTD 410
D A + K L SL+I + D
Sbjct: 275 GDEEAKSISEMKQLTSLDISNNRIGD 300
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 26/231 (11%)
Query: 161 NIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
N+K+ + DS K +S + LKSL I + + D G ++ +++LT L
Sbjct: 97 NVKFSRRLLDSIEQAKFISEMKQLKSLTIDENGIGDEGAKFISEMKQLTSL--------- 147
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
S++Y Q+ D+G + S++ L L++ N+I DE + + L
Sbjct: 148 ----------SVYY-----NQIGDEGAKSISEMNQLTSLDISGNQIGDEGAKSIIEVKQL 192
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
SL++ IG+EG ++G+ L L++S ++G G + +SG+ L S+N+ I D
Sbjct: 193 TSLDIYFNQIGEEGAKFISGMNQLTSLDISGNRIGDEGAKSISGMNQLTSLNVYNNRIGD 252
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
+ + + LKSLN+ +I D +++ + LT LD+ RI D A
Sbjct: 253 EGAKSIIDMKQLKSLNIGGNRIGDEEAKSISEMKQLTSLDISNNRIGDEEA 303
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 101/185 (54%), Gaps = 7/185 (3%)
Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
+ +S + L+S+ + GI D + ++ + L SL++ QI D G +++ + LT L
Sbjct: 112 KFISEMKQLKSLTIDENGIGDEGAKFISEMKQLTSLSVYYNQIGDEGAKSISEMNQLTSL 171
Query: 378 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
D+ G +I D GA + K L SL+I + + G K I ++ LT L++S N + D+
Sbjct: 172 DISGNQIGDEGAKSIIEVKQLTSLDIYFNQIGEEGAKFISGMNQLTSLDISGN-RIGDEG 230
Query: 438 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV------TANDIKRLQS 491
+ ISG+ L SLNV N+RI G + + +K L+SL + ++ + +++K+L S
Sbjct: 231 AKSISGMNQLTSLNVYNNRIGDEGAKSIIDMKQLKSLNIGGNRIGDEEAKSISEMKQLTS 290
Query: 492 RDLPN 496
D+ N
Sbjct: 291 LDISN 295
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 4/154 (2%)
Query: 41 YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
Y + D+ I S+ + L S+D+SG+ + D G + + L SLD F QI + G +
Sbjct: 151 YNQIGDEGAKSI-SEMNQLTSLDISGNQIGDEGAKSIIEVKQLTSLDIYFN-QIGEEGAK 208
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+ G++ LTSL N I +G K+ +G+ L L++ G ++ + +L+SL
Sbjct: 209 FISGMNQLTSLDI-SGNRIGDEGAKSISGMNQLTSLNVYNNRIGDEGAKSIIDMKQLKSL 267
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
NI N I D + K +S + L SL IS +++ D
Sbjct: 268 NI-GGNRIGDEEAKSISEMKQLTSLDISNNRIGD 300
>gi|320170955|gb|EFW47854.1| hypothetical protein CAOG_05792 [Capsaspora owczarzaki ATCC 30864]
Length = 727
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 108/375 (28%), Positives = 161/375 (42%), Gaps = 11/375 (2%)
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCT 142
SLD+N I + GL+ LT LS N IT+ F G+ L L L + T
Sbjct: 74 SLDYNLITSIPA---DAFTGLTALTYLSLYAN-PITSIPAGTFTGVTALTYLSLSSNQIT 129
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
I G L L SL + + N IT + LT L L + +++T A+ G
Sbjct: 130 SIPAGA--FTDLTALRSLFL-YANLITSISANAFTSLTALTYLHLYGNQITSISNAF-TG 185
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
L LT L+L +T+ ++ + L +L L+L Q++ + F+ + +L L L N
Sbjct: 186 LTALTELHLYNNHITSISANAFTDLTALTELSLISNQITSIPADTFTGLTALTYLYLNSN 245
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
+IT GLT L L+L+S I T L L L + + S +G
Sbjct: 246 QITSIPADTFTGLTALTYLSLNSNSITSIAATAFTDLTALTYLSFNSNSITSISANAFAG 305
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
LT L + S I+ S AGL++L L+L + QIT T +T LT+L L
Sbjct: 306 LTALTYLFFSSNLITSISANAFAGLTALTYLSLGSNQITSIPAGTFTGVTALTYLSLDSN 365
Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
+IT A L L + +T +L++LT L L N +T L
Sbjct: 366 QITSIPADTFTGLTALTYLYLGTNQITSLPSSSFTNLTALTYLVLQSN-PITTLPPGLFK 424
Query: 443 GLTGLVSLNVSNSRI 457
GL ++L+ SN +
Sbjct: 425 GLPNDLALSYSNPYL 439
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 105/394 (26%), Positives = 166/394 (42%), Gaps = 8/394 (2%)
Query: 92 IQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGL--INLVKLDLERCTRIHGGL 148
+ S G L + G+ T+ + +N IT+ AF GL + + LD T I
Sbjct: 28 VTCSGGSLTAIPSGIPTDTTKLYINSNPITSIPTNAFTGLTALTFLSLDYNLITSIPADA 87
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
GL L L++ + N IT +G+T L L +S +++T L L
Sbjct: 88 --FTGLTALTYLSL-YANPITSIPAGTFTGVTALTYLSLSSNQITSIPAGAFTDLTALRS 144
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L L +T+ ++ ++L +L YL+L Q++ F+ + +L L+L N IT
Sbjct: 145 LFLYANLITSISANAFTSLTALTYLHLYGNQITSIS-NAFTGLTALTELHLYNNHITSIS 203
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
LT L L+L S I TGL L L L+ Q+ S +GLT L
Sbjct: 204 ANAFTDLTALTELSLISNQITSIPADTFTGLTALTYLYLNSNQITSIPADTFTGLTALTY 263
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
++L+ I+ + L++L L+ ++ IT A LT LT+L IT
Sbjct: 264 LSLNSNSITSIAATAFTDLTALTYLSFNSNSITSISANAFAGLTALTYLFFSSNLITSIS 323
Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
A L L + +T +++LT L+L N +T + +GLT L
Sbjct: 324 ANAFAGLTALTYLSLGSNQITSIPAGTFTGVTALTYLSLDSN-QITSIPADTFTGLTALT 382
Query: 449 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
L + ++ITS L L L L+S +T
Sbjct: 383 YLYLGTNQITSLPSSSFTNLTALTYLVLQSNPIT 416
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 88/320 (27%), Positives = 137/320 (42%), Gaps = 6/320 (1%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N IT +GLT L L + + +T GL LT L+L P+T+ + +
Sbjct: 54 NPITSIPTNAFTGLTALTFLSLDYNLITSIPADAFTGLTALTYLSLYANPITSIPAGTFT 113
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
+ +L YL+L+ Q++ F+ + +L+ L L N IT LT L L+L
Sbjct: 114 GVTALTYLSLSSNQITSIPAGAFTDLTALRSLFLYANLITSISANAFTSLTALTYLHLYG 173
Query: 286 CGIG--DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
I LT L L T + ++ L+ LT L I+ T I +
Sbjct: 174 NQITSISNAFTGLTALTELHLYNNHITSISANAFTDLTALTELSLISNQITSIPADTFT- 232
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
GL++L L L++ QIT T LT LT+L L IT A + L L
Sbjct: 233 --GLTALTYLYLNSNQITSIPADTFTGLTALTYLSLNSNSITSIAATAFTDLTALTYLSF 290
Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
+T L++LT L S N +T + +GLT L L++ +++ITS
Sbjct: 291 NSNSITSISANAFAGLTALTYLFFSSNL-ITSISANAFAGLTALTYLSLGSNQITSIPAG 349
Query: 464 HLKPLKNLRSLTLESCKVTA 483
+ L L+L+S ++T+
Sbjct: 350 TFTGVTALTYLSLDSNQITS 369
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 134/304 (44%), Gaps = 2/304 (0%)
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
T+ L I+ + +T GL LT L+L+ +T+ D+ + L +L YL+L
Sbjct: 44 TDTTKLYINSNPITSIPTNAFTGLTALTFLSLDYNLITSIPADAFTGLTALTYLSLYANP 103
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
++ F+ + +L L+L N+IT LT L SL L + I T L
Sbjct: 104 ITSIPAGTFTGVTALTYLSLSSNQITSIPAGAFTDLTALRSLFLYANLITSISANAFTSL 163
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
L L L Q+ S +GLT L ++L I+ S L++L L+L + Q
Sbjct: 164 TALTYLHLYGNQITSIS-NAFTGLTALTELHLYNNHITSISANAFTDLTALTELSLISNQ 222
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
IT T LT LT+L L +IT A L L + +T DL
Sbjct: 223 ITSIPADTFTGLTALTYLYLNSNQITSIPADTFTGLTALTYLSLNSNSITSIAATAFTDL 282
Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 479
++LT L+ + N ++T + +GLT L L S++ ITS L L L+L S
Sbjct: 283 TALTYLSFNSN-SITSISANAFAGLTALTYLFFSSNLITSISANAFAGLTALTYLSLGSN 341
Query: 480 KVTA 483
++T+
Sbjct: 342 QITS 345
>gi|397499401|ref|XP_003820442.1| PREDICTED: F-box/LRR-repeat protein 14 [Pan paniscus]
Length = 561
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 110/335 (32%), Positives = 179/335 (53%), Gaps = 48/335 (14%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+ G+ N++SL +S C +TD+G+ + + +GSL LN
Sbjct: 246 IQGMANIESLNLSGCYNLTDNGLGHA----------------------FVQEIGSLRALN 283
Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLK-GLTNLESLNLDSC-GIG 289
L+ C Q++D + ++ + L+VL LG + IT+ L+ + GL L+SLNL SC +
Sbjct: 284 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 343
Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISD 338
D G+ +L G+ L+ L L D Q + L+H+S GLT L +NLSF GISD
Sbjct: 344 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 403
Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
L L+ + SL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ +
Sbjct: 404 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 462
Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L ++
Sbjct: 463 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 522
Query: 452 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 485
+ +RIT GL + L L+ L L ++T ++
Sbjct: 523 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSE 557
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 101/319 (31%), Positives = 170/319 (53%), Gaps = 40/319 (12%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 246 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 305
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 306 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 365
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 366 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 425
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 426 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 484
Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGL----RHLSGLTNLESINLSFTGISDGSLRKL 344
+ GL L +C+ ++D GL HLS LT ++ T I+ L ++
Sbjct: 485 MVRQMHGLRTLNIGQCVRITD-----KGLELIAEHLSQLTGIDLYGC--TRITKRGLERI 537
Query: 345 AGLSSLKSLNLDARQITDT 363
L LK LNL Q+TD+
Sbjct: 538 TQLPCLKVLNLGLWQMTDS 556
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 107/337 (31%), Positives = 171/337 (50%), Gaps = 36/337 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 228 RGIRRVQILSLRRSLSYVIQGM------ANIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 281
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 282 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 339
Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A + +A G L L L CQ L+D + S+ + L++LNL F
Sbjct: 340 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 399
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRH 319
I+D L+HL + +L SLNL SC I D G+++L G L L++S +VG L +
Sbjct: 400 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 459
Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
++ GL L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT
Sbjct: 460 IAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 519
Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
+DL+G RIT G + L+ L + +TD+
Sbjct: 520 GIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 556
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 375 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 434
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 435 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 494
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 495 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGC-----------------------TRITK 531
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 532 RGLERITQLPCLKVLNLGLWQMTD 555
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 34/246 (13%)
Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 322
++G+ N+ESLNL C G+G + + L L C +++D+ +G ++L G
Sbjct: 246 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 304
Query: 323 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 372
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 305 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 360
Query: 373 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 426
GL L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LN
Sbjct: 361 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 419
Query: 427 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 483
L N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++
Sbjct: 420 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 479
Query: 484 NDIKRL 489
+ I R+
Sbjct: 480 DGINRM 485
>gi|13905232|gb|AAH06913.1| Fbx14l protein, partial [Mus musculus]
Length = 327
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 111/338 (32%), Positives = 180/338 (53%), Gaps = 48/338 (14%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+ G+ N++SL +S C +TD+G+ + + +GSL LN
Sbjct: 13 IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 50
Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
L+ C Q++D + ++ + L+VL LG + IT+ L+ + GL L+SLNL SC +
Sbjct: 51 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 110
Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
D G+ +L G+ L+ L L D Q + L+H+S GLT L +NLSF G ISD
Sbjct: 111 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 170
Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
L L+ + SL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ +
Sbjct: 171 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 229
Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L ++
Sbjct: 230 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 289
Query: 452 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
+ +RIT GL + L L+ L L ++T ++ R
Sbjct: 290 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKVR 327
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 169/315 (53%), Gaps = 32/315 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 13 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 72
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 73 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 132
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 133 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 192
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 193 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 251
Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 252 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYG--CTRITKRGLERITQLP 308
Query: 349 SLKSLNLDARQITDT 363
LK LNL Q+TD+
Sbjct: 309 CLKVLNLGLWQMTDS 323
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 142 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 201
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 202 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 261
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 262 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 298
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 299 RGLERITQLPCLKVLNLGLWQMTD 322
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 34/246 (13%)
Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 322
++G+ N+ESLNL C G+G + + L L C +++D+ +G ++L G
Sbjct: 13 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 71
Query: 323 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 372
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 72 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 127
Query: 373 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 426
GL L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LN
Sbjct: 128 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 186
Query: 427 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 483
L N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++
Sbjct: 187 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 246
Query: 484 NDIKRL 489
+ I R+
Sbjct: 247 DGINRM 252
>gi|320169501|gb|EFW46400.1| tyrosine-protein kinase Src42A [Capsaspora owczarzaki ATCC 30864]
Length = 1286
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 102/379 (26%), Positives = 160/379 (42%), Gaps = 26/379 (6%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
G+ N T+ + NN IT+ AF GL L L +++G
Sbjct: 58 GIPNTTTQLYLNNNQITSIPTSAFPGLTVLQIL------QVYG----------------- 94
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
N IT +GLT + SLQ++ +++TD GL L+ L L +++ +
Sbjct: 95 --NQITYIPADAFTGLTAVISLQLNNNRLTDISANAFTGLSALSQLFLNNNRLSSVPAGA 152
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+ L +L L LN +++ F+ + +L L L FN+IT LT L L L
Sbjct: 153 FAGLPALKQLQLNSNRITSISATLFTGLTALTWLRLEFNQITSIPASVFTDLTGLSVLVL 212
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
S I TGL L +++S + S +GLT ++L I+ S
Sbjct: 213 RSNNITSIPPYAFTGLTALSQIDVSINLITSIPAFAFAGLTAATYLDLYINQITSISDSA 272
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
GL++L LN+D ++T LT L +L L+ ++T L SL++
Sbjct: 273 FTGLTALTFLNMDNNRLTSILSTTFAGLTALQYLYLWSNQVTSIAPNTFAGLTALNSLQL 332
Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
+T DLS L L+L+ N +T + LT L L++ N+RITS
Sbjct: 333 YDNQITSIPANAFDDLSVLNTLSLNDNL-ITSVPASAFANLTSLQYLSLFNNRITSIAAN 391
Query: 464 HLKPLKNLRSLTLESCKVT 482
L L SL L + ++T
Sbjct: 392 AFDDLTALGSLHLHTNRIT 410
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 104/393 (26%), Positives = 175/393 (44%), Gaps = 7/393 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVN 150
QI+ + GL+ + SL NN +T AF GL L +L L R + + G
Sbjct: 96 QITYIPADAFTGLTAVISLQLN-NNRLTDISANAFTGLSALSQLFLNNNRLSSVPAGA-- 152
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
GL L+ L + N IT +GLT L L++ +++T + L L++L
Sbjct: 153 FAGLPALKQLQLN-SNRITSISATLFTGLTALTWLRLEFNQITSIPASVFTDLTGLSVLV 211
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L +T+ + + L +L ++++ ++ F+ + + L+L N+IT
Sbjct: 212 LRSNNITSIPPYAFTGLTALSQIDVSINLITSIPAFAFAGLTAATYLDLYINQITSISDS 271
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
GLT L LN+D+ + GL L+ L L QV S +GLT L S+
Sbjct: 272 AFTGLTALTFLNMDNNRLTSILSTTFAGLTALQYLYLWSNQVTSIAPNTFAGLTALNSLQ 331
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
L I+ LS L +L+L+ IT +A +LT L +L LF RIT A
Sbjct: 332 LYDNQITSIPANAFDDLSVLNTLSLNDNLITSVPASAFANLTSLQYLSLFNNRITSIAAN 391
Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
+ L SL + +T+ LS+LT L+L N ++T + S L+ + +
Sbjct: 392 AFDDLTALGSLHLHTNRITNIPSTAFASLSALTQLHLYNN-SITSISAGTFSSLSAVTYM 450
Query: 451 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 483
+ +++I+S + +L+ L L ++T+
Sbjct: 451 YMYDNQISSIPANTFTGMTSLKLLYLSGNQITS 483
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 98/348 (28%), Positives = 141/348 (40%), Gaps = 36/348 (10%)
Query: 117 NAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N IT+ AF GL L L+++ R T I GL L+ L + W N +T
Sbjct: 263 NQITSISDSAFTGLTALTFLNMDNNRLTSILS--TTFAGLTALQYLYL-WSNQVTSIAPN 319
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+GLT L SLQ+ +++T + A D LS L + L+
Sbjct: 320 TFAGLTALNSLQLYDNQITS---------------------IPANAFDDLSVLNT---LS 355
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS---CGIGDE 291
LN ++ F+ + SL+ L+L N IT LT L SL+L + I
Sbjct: 356 LNDNLITSVPASAFANLTSLQYLSLFNNRITSIAANAFDDLTALGSLHLHTNRITNIPST 415
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
+L+ L L S T + + LS +T + + IS G++SLK
Sbjct: 416 AFASLSALTQLHLYNNSITSISAGTFSSLSAVTYMYMYD---NQISSIPANTFTGMTSLK 472
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
L L QIT A + LT LT L L+ RIT AA L +L + ++
Sbjct: 473 LLYLSGNQITSVSANAFSGLTALTQLSLYLNRITSISAAAFPGLTALLTLSLSDNQISSI 532
Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
DL+ L L L N +T GL L +L + N+ ITS
Sbjct: 533 PSSAFTDLTLLKFLYLYNN-QITSIAANAFVGLPALSTLLLHNNTITS 579
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 142/345 (41%), Gaps = 29/345 (8%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
L+FN I L GLS L R+N IT+ AF GL L ++D+
Sbjct: 188 LEFNQITSIPASVFTDLTGLSVLV----LRSNNITSIPPYAFTGLTALSQIDVS------ 237
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
N IT +GLT L + +++T + GL
Sbjct: 238 -------------------INLITSIPAFAFAGLTAATYLDLYINQITSISDSAFTGLTA 278
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
LT LN++ +T+ + + L +L YL L Q++ F+ + +L L L N+IT
Sbjct: 279 LTFLNMDNNRLTSILSTTFAGLTALQYLYLWSNQVTSIAPNTFAGLTALNSLQLYDNQIT 338
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
L+ L +L+L+ I L +L+ L L + ++ S LT
Sbjct: 339 SIPANAFDDLSVLNTLSLNDNLITSVPASAFANLTSLQYLSLFNNRITSIAANAFDDLTA 398
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L S++L I++ A LS+L L+L IT +SL+ +T++ ++ +I+
Sbjct: 399 LGSLHLHTNRITNIPSTAFASLSALTQLHLYNNSITSISAGTFSSLSAVTYMYMYDNQIS 458
Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
A +L+ L + G +T L++LT L+L N
Sbjct: 459 SIPANTFTGMTSLKLLYLSGNQITSVSANAFSGLTALTQLSLYLN 503
>gi|302753328|ref|XP_002960088.1| hypothetical protein SELMODRAFT_437235 [Selaginella moellendorffii]
gi|300171027|gb|EFJ37627.1| hypothetical protein SELMODRAFT_437235 [Selaginella moellendorffii]
Length = 657
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 140/470 (29%), Positives = 219/470 (46%), Gaps = 57/470 (12%)
Query: 56 GSSLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
G+ L S++LS G GL+ C++L +D ++C + D + L +SNL +L
Sbjct: 99 GNRLASINLSRVGGFTSAGLGLLARSCCASLTDVDLSYCSNLKDSDVLALAQISNLQALR 158
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
++IT G+ A ++KL L +K C ITD
Sbjct: 159 LTGCHSITDIGLGCLAAGCKMLKL-----------------------LTLKGCLGITDIG 195
Query: 173 MKPLS-GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLS-ALGS 229
+ ++ L++L +S ++VTD G+A + L L +LNL C V L SL + S
Sbjct: 196 IALVAVNCKQLRTLDLSYTEVTDEGLASIATLHSLEVLNLVSCNNVDDGGLRSLKRSCRS 255
Query: 230 LFYLNLNRCQ-LSDDGCEKFSKIG-SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC 286
L L+++RC +SD G + SL+ L L + + ITD+ L + +L+S+ LD C
Sbjct: 256 LLKLDVSRCSNVSDAGLAALATSHLSLEQLTLSYCSIITDDLLATFQKFDHLQSIVLDGC 315
Query: 287 GIGDEGLVNLTGLC-NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFT-GISDGSLR 342
I GL + C LK L LS + V G+ ++ G T L +NL+ ++D SL
Sbjct: 316 EIARNGLPFIARGCKQLKELSLSKCRGVTDRGIAAVAQGCTALHKLNLTCCRELTDASLC 375
Query: 343 KLA----GLSSLKSLNLDARQITDTGLAAL-TSLTGLTHLDLFGARITDSGAAYLRNFKN 397
+++ GL SLK + IT+ GL L L LD ++D+G Y+
Sbjct: 376 RISKDCKGLESLKMESCSL--ITEDGLCGLGEGCPRLEELDFTECNMSDTGLKYISKCTA 433
Query: 398 LRSLEI--CGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELI-SGLTGLVSLNVS 453
LRSL++ C +TD GV HI +L L+ ++ + D + I SG L L++S
Sbjct: 434 LRSLKLGFC-STITDKGVAHIGARCCNLRELDFYRSKGIGDAGVAAIASGCPKLKLLDLS 492
Query: 454 N-SRITSAGLRHLKPLKNLRSLTLESC--------KVTANDIKRLQSRDL 494
S+IT L+ L L+ L+ L L C V A+ KRL D+
Sbjct: 493 YCSKITDCSLQSLSQLRELQRLELRGCVLVSSTGLAVMASGCKRLTEIDI 542
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 129/480 (26%), Positives = 219/480 (45%), Gaps = 75/480 (15%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G+ D + ++A L ++DLS ++VTD GL + +L+ L+ C + DGGL L
Sbjct: 190 GITDIGIALVAVNCKQLRTLDLSYTEVTDEGLASIATLHSLEVLNLVSCNNVDDGGLRSL 249
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLK-GLMKLESL 160
+ S R +L+KLD+ RC+ + GL L + LE L
Sbjct: 250 KR-------SCR-----------------SLLKLDVSRCSNVSDAGLAALATSHLSLEQL 285
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTA 218
+ +C+ ITD + +L+S+ + ++ +G+ ++ +G ++L L+L C VT
Sbjct: 286 TLSYCSIITDDLLATFQKFDHLQSIVLDGCEIARNGLPFIARGCKQLKELSLSKCRGVTD 345
Query: 219 ACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLT 276
+ +++ +L LNL C+ E+TD L + K
Sbjct: 346 RGIAAVAQGCTALHKLNLTCCR-----------------------ELTDASLCRISKDCK 382
Query: 277 NLESLNLDSCG-IGDEGLVNL-TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF- 333
LESL ++SC I ++GL L G L+ L+ ++ + +GL+++S T L S+ L F
Sbjct: 383 GLESLKMESCSLITEDGLCGLGEGCPRLEELDFTECNMSDTGLKYISKCTALRSLKLGFC 442
Query: 334 TGISDGSLRKL-AGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDL-FGARITDSGA 389
+ I+D + + A +L+ L+ ++ I D G+AA+ S L LDL + ++ITD
Sbjct: 443 STITDKGVAHIGARCCNLRELDFYRSKGIGDAGVAAIASGCPKLKLLDLSYCSKITDCSL 502
Query: 390 AYLRNFKNLRSLEICGGGLTDAG-----VKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 444
L + L+ LE+ G L + K L+ + + SQ N L
Sbjct: 503 QSLSQLRELQRLELRGCVLVSSTGLAVMASGCKRLTEIDIKRCSQIGNAGVSALSFFC-- 560
Query: 445 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL-------ESCKVTA-NDIKRLQSRDLPN 496
GL +N+S I+ AGL L L L+S+ L C VT + K L++ LP+
Sbjct: 561 PGLRMMNISYCPISKAGLLSLPRLSCLQSVRLVHLKNVTVDCFVTVLQNCKSLKNVKLPS 620
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 28/162 (17%)
Query: 29 RDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF 88
R C L++L + G+ D + IAS C L+ LD
Sbjct: 456 RCCNLRELDFYRSKGIGDAGVAAIAS------------------------GCPKLKLLDL 491
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HG 146
++C +I+D L+ L L L L R +++ G+ A G L ++D++RC++I +
Sbjct: 492 SYCSKITDCSLQSLSQLRELQRLELRGCVLVSSTGLAVMASGCKRLTEIDIKRCSQIGNA 551
Query: 147 GLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
G+ L L +NI +C I+ + + L L+ L+S+++
Sbjct: 552 GVSALSFFCPGLRMMNISYCP-ISKAGLLSLPRLSCLQSVRL 592
>gi|334117579|ref|ZP_08491670.1| Adenylate cyclase [Microcoleus vaginatus FGP-2]
gi|333460688|gb|EGK89296.1| Adenylate cyclase [Microcoleus vaginatus FGP-2]
Length = 516
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 141/426 (33%), Positives = 206/426 (48%), Gaps = 57/426 (13%)
Query: 97 GGLEHLRGLSNLTSLSFRRNNAITAQG-MKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
G + L L+NLT L N A G +K A L NL +L+L G + L L
Sbjct: 100 GDITPLASLTNLTVLDLGFN----ALGDIKPLASLTNLTRLNL--FGNQIGDIKPLASLT 153
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
KL L + N I D+KPL+ LTNL L +S ++V D I L L LT L+L+G
Sbjct: 154 KLTELTLN-NNKI--GDIKPLASLTNLTDLVLSSNQVGD--IKPLASLTNLTRLDLDGNV 208
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+ + L++L +L L+L+ + D + + + +L L+L N+I D + L L
Sbjct: 209 I--GDIKPLASLTNLTRLDLDGNVIGD--IKPLASLTNLSSLDLDDNQIGD--IKPLASL 262
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS--------------------S 315
TNL L+L IGD + L L NL L L D Q+G
Sbjct: 263 TNLMGLDLRRIVIGD--IKPLASLTNLTDLSLDDNQIGDIKPLASLTNLTRLVLSSNQIR 320
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
++ L+ LTNL S++LS I G ++ LA L++L SL+L+ +I D + L SLT LT
Sbjct: 321 DIKPLASLTNLSSLDLSGNVI--GDIKPLASLTNLSSLDLNNNKIGD--IKPLASLTKLT 376
Query: 376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
L L G I D L + NL SL + G + D +K + L++L+ L L N + D
Sbjct: 377 ELTLSGNVIGD--IKPLASLTNLSSLVLFGNVIGD--IKPLASLTNLSSLVLDGNV-IGD 431
Query: 436 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP 495
++ ++ LT L L +S++ I ++ L L NL SL L + DIK L S L
Sbjct: 432 --IKALASLTNLAGLFLSSNVI--GDIKPLASLTNLSSLDLSDNHI--GDIKPLAS--LT 483
Query: 496 NLVSFR 501
NL+
Sbjct: 484 NLIELH 489
Score = 42.0 bits (97), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 81/181 (44%), Gaps = 31/181 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L S+DLSG+ + D + L +NL SLD N G ++ L L+ LT L+ N
Sbjct: 329 TNLSSLDLSGNVIGD--IKPLASLTNLSSLDLN---NNKIGDIKPLASLTKLTELTLSGN 383
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL--------NIKWCNCI 168
+K A L NL L L + G + L L L SL +IK +
Sbjct: 384 ---VIGDIKPLASLTNLSSLVL--FGNVIGDIKPLASLTNLSSLVLDGNVIGDIKALASL 438
Query: 169 TD-----------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
T+ D+KPL+ LTNL SL +S + + D I L L L L+L G P+
Sbjct: 439 TNLAGLFLSSNVIGDIKPLASLTNLSSLDLSDNHIGD--IKPLASLTNLIELHLSGNPIA 496
Query: 218 A 218
Sbjct: 497 P 497
>gi|290984372|ref|XP_002674901.1| predicted protein [Naegleria gruberi]
gi|284088494|gb|EFC42157.1| predicted protein [Naegleria gruberi]
Length = 599
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 106/422 (25%), Positives = 184/422 (43%), Gaps = 50/422 (11%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+++ + + G H+ L LD N + I + G+E + + LT L
Sbjct: 167 SKLKELTSLEIGDNHLKSEGAAHIAQMRKLTFLDINTNM-IGNEGIELISRMEQLTDLDV 225
Query: 114 RRNNAITAQGMKAFAGLINLVKLDL-----------------------ERCTRI-HGGLV 149
NN I ++G+K+ + +L L++ C I G
Sbjct: 226 MDNN-IRSEGVKSLCKMKHLTNLNIGNNPIEDEGAILLGEMKQLKNLITACNNIGMKGFS 284
Query: 150 NLKGLMKLESLNI-----KWCNCITDSD----------------MKPLSGLTNLKSLQIS 188
+L L+ LESL I K + I + + P+S L+NL L I
Sbjct: 285 SLSTLLNLESLVILGLDGKSTDFIREMNQLTRLEFYGSNLEPKGFDPISHLSNLTFLTIR 344
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+ D + + +KLT LN+ C + S+ L +L +L+L+ ++ + E
Sbjct: 345 GRNIADGDLECIGQFKKLTTLNVPSCNINQG-FKSICGLKNLTFLDLSYNKI--ESVESI 401
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
+ + SL L++ N I E + L NL +L + I DEG+ L+ + L L ++
Sbjct: 402 TNLKSLTQLDINGNRIGHEGAKSISQLDNLTNLQIGHNLIQDEGIKYLSTMQCLTTLGVA 461
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
+ Q+ G + +S L S++L+ I + L+ L++L L + +I D G +
Sbjct: 462 ENQISIEGAKFISKSHQLTSLDLTNNVIETEGAKILSELNNLTGLFVYGNRIRDEGAKYI 521
Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
+++ LT LD+ ITD GA + N L +L I + D G K I + LT+L++
Sbjct: 522 STMQQLTILDIAYNEITDEGAKAISNLDQLSTLYIYSNEICDEGAKSICGMKQLTILDID 581
Query: 429 QN 430
N
Sbjct: 582 YN 583
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 146/301 (48%), Gaps = 8/301 (2%)
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L+IS ++ + ++ +++LT L++ + ++S L L LN+ + ++ +G
Sbjct: 103 LEISYCRLEAEDVNFIGEMKQLTELDISLNNINCKGAITISQLSKLTKLNVYQTKMGVEG 162
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
++ SK+ L L +G N + E H+ + L L++++ IG+EG+ ++ + L
Sbjct: 163 AKELSKLKELTSLEIGDNHLKSEGAAHIAQMRKLTFLDINTNMIGNEGIELISRMEQLTD 222
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
L++ D + S G++ L + +L ++N+ I D L + LK+L I G
Sbjct: 223 LDVMDNNIRSEGVKSLCKMKHLTNLNIGNNPIEDEGAILLGEMKQLKNLITACNNIGMKG 282
Query: 365 LAALTSLTGLTHLDLFG--ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
++L++L L L + G + TD ++R L LE G L G I LS+L
Sbjct: 283 FSSLSTLLNLESLVILGLDGKSTD----FIREMNQLTRLEFYGSNLEPKGFDPISHLSNL 338
Query: 423 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
T L + + N+ D LE I L +LNV + I + G + + LKNL L L K+
Sbjct: 339 TFLTI-RGRNIADGDLECIGQFKKLTTLNVPSCNI-NQGFKSICGLKNLTFLDLSYNKIE 396
Query: 483 A 483
+
Sbjct: 397 S 397
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 132/294 (44%), Gaps = 41/294 (13%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G++ K D I + + L ++ GS++ G + SNL L I+DG LE +
Sbjct: 299 GLDGKSTDFI-REMNQLTRLEFYGSNLEPKGFDPISHLSNLTFLTIR-GRNIADGDLECI 356
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKLESL 160
LT+L+ N QG K+ GL NL LDL +I + NLK L +L+ +
Sbjct: 357 GQFKKLTTLNVPSCN--INQGFKSICGLKNLTFLDLSY-NKIESVESITNLKSLTQLD-I 412
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL-------NLEG 213
N N I K +S L NL +LQI + + D GI YL +Q LT L ++EG
Sbjct: 413 N---GNRIGHEGAKSISQLDNLTNLQIGHNLIQDEGIKYLSTMQCLTTLGVAENQISIEG 469
Query: 214 CPVT--------------------AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
A L L+ L LF NR + D+G + S +
Sbjct: 470 AKFISKSHQLTSLDLTNNVIETEGAKILSELNNLTGLFVYG-NR--IRDEGAKYISTMQQ 526
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
L +L++ +NEITDE + L L +L + S I DEG ++ G+ L L++
Sbjct: 527 LTILDIAYNEITDEGAKAISNLDQLSTLYIYSNEICDEGAKSICGMKQLTILDI 580
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 94/216 (43%), Gaps = 27/216 (12%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL +D++G+ + G + NL +L + I D G+++L + LT+L N
Sbjct: 406 SLTQLDINGNRIGHEGAKSISQLDNLTNLQIGHNL-IQDEGIKYLSTMQCLTTLGVAEN- 463
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I+ +G K + L LDL N I K LS
Sbjct: 464 QISIEGAKFISKSHQLTSLDLTN-------------------------NVIETEGAKILS 498
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L NL L + +++ D G Y+ +Q+LT+L++ +T ++S L L L +
Sbjct: 499 ELNNLTGLFVYGNRIRDEGAKYISTMQQLTILDIAYNEITDEGAKAISNLDQLSTLYIYS 558
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
++ D+G + + L +L++ +N +++E L+
Sbjct: 559 NEICDEGAKSICGMKQLTILDIDYNVLSEEVSNQLR 594
>gi|406830031|ref|ZP_11089625.1| leucine-rich repeat-containing protein [Schlesneria paludicola DSM
18645]
Length = 306
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 117/238 (49%), Gaps = 8/238 (3%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+ +TD K L+ L +L ++ S + D+ + + L +L L L+ VT A L S+S
Sbjct: 59 HSMTDDAAKQLTAFPALTTLALTDSPIGDAHMGVIGALTQLESLALDHTQVTDAGLQSIS 118
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
+L L LNL C ++D G + + L LNL +I LV+L L LE+L L +
Sbjct: 119 SLEHLRELNLAGCSVTDGGLGSLAGLTELTSLNLNDTQINGLGLVYLSKLNRLEALYLQN 178
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
+ E + L+GL +LK L L+ T+ G +R ++GL +LE + L+ T I D + LA
Sbjct: 179 TVVDFESIPPLSGLESLKILHLAGTKTGGGIVRAITGLPSLERLYLNGTSIKDEDIPALA 238
Query: 346 GL-----SSLKSLNLDARQITDTGLAALTSLTGL---THLDLFGARITDSGAAYLRNF 395
+ K L ++ ++D L + L L T + + G ++T G LR
Sbjct: 239 AVLAQNCPHFKGLFVEKTALSDAALEPMHPLADLKEFTLIHVHGTKVTKDGVVRLRKL 296
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 115/243 (47%), Gaps = 8/243 (3%)
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
+ +S +TD L LT L L P+ A + + AL L L L+ Q++D G
Sbjct: 54 VSLSSHSMTDDAAKQLTAFPALTTLALTDSPIGDAHMGVIGALTQLESLALDHTQVTDAG 113
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
+ S + L+ LNL +TD L L GLT L SLNL+ I GLV L+ L L+
Sbjct: 114 LQSISSLEHLRELNLAGCSVTDGGLGSLAGLTELTSLNLNDTQINGLGLVYLSKLNRLEA 173
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
L L +T V + LSGL +L+ ++L+ T G +R + GL SL+ L L+ I D
Sbjct: 174 LYLQNTVVDFESIPPLSGLESLKILHLAGTKTGGGIVRAITGLPSLERLYLNGTSIKDED 233
Query: 365 LAALTSLTGL--THLD-LFGARITDSGAAY-----LRNFKNLRSLEICGGGLTDAGVKHI 416
+ AL ++ H LF + S AA L + K + + G +T GV +
Sbjct: 234 IPALAAVLAQNCPHFKGLFVEKTALSDAALEPMHPLADLKEFTLIHVHGTKVTKDGVVRL 293
Query: 417 KDL 419
+ L
Sbjct: 294 RKL 296
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 121/257 (47%), Gaps = 18/257 (7%)
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
V++L + +TD+ L L +L L IGD + + L L+ L L TQV +
Sbjct: 53 VVSLSSHSMTDDAAKQLTAFPALTTLALTDSPIGDAHMGVIGALTQLESLALDHTQVTDA 112
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
GL+ +S L +L +NL+ ++DG L LAGL+ L SLNL+ QI GL L+ L L
Sbjct: 113 GLQSISSLEHLRELNLAGCSVTDGGLGSLAGLTELTSLNLNDTQINGLGLVYLSKLNRLE 172
Query: 376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
L L + L ++L+ L + G V+ I L SL L L N T
Sbjct: 173 ALYLQNTVVDFESIPPLSGLESLKILHLAGTKTGGGIVRAITGLPSLERLYL----NGTS 228
Query: 436 KTLELISGLTGLVSLN--------VSNSRITSAGLRHLKPLKNLRSLTL---ESCKVTAN 484
E I L +++ N V + ++ A L + PL +L+ TL KVT +
Sbjct: 229 IKDEDIPALAAVLAQNCPHFKGLFVEKTALSDAALEPMHPLADLKEFTLIHVHGTKVTKD 288
Query: 485 DIKRLQSRDLP--NLVS 499
+ RL+ + LP N+VS
Sbjct: 289 GVVRLR-KLLPEANVVS 304
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 121/261 (46%), Gaps = 43/261 (16%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
L AF AL L L P + D M VI + + L S+ L + VTD+GL + +L+
Sbjct: 69 LTAFP--ALTTLALTDSP-IGDAHMGVIGAL-TQLESLALDHTQVTDAGLQSISSLEHLR 124
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
L+ C ++DGGL L GL+ LTSL+ T+I
Sbjct: 125 ELNLAGC-SVTDGGLGSLAGLTELTSLNLND--------------------------TQI 157
Query: 145 HG-GLVNLKGLMKLESLNIKWCNCITDSD-MKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
+G GLV L L +LE+L ++ N + D + + PLSGL +LK L ++ +K + + G
Sbjct: 158 NGLGLVYLSKLNRLEALYLQ--NTVVDFESIPPLSGLESLKILHLAGTKTGGGIVRAITG 215
Query: 203 LQKLTLLNLEGCPVTAACLDSLSAL-----GSLFYLNLNRCQLSDDGCEKFSKIGSLK-- 255
L L L L G + + +L+A+ L + + LSD E + LK
Sbjct: 216 LPSLERLYLNGTSIKDEDIPALAAVLAQNCPHFKGLFVEKTALSDAALEPMHPLADLKEF 275
Query: 256 -VLNLGFNEITDECLVHLKGL 275
++++ ++T + +V L+ L
Sbjct: 276 TLIHVHGTKVTKDGVVRLRKL 296
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 100/227 (44%), Gaps = 8/227 (3%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
V LS +TD L L +L I D + + L+ L SL+ +T
Sbjct: 54 VSLSSHSMTDDAAKQLTAFPALTTLALTDS-PIGDAHMGVIGALTQLESLALDHTQ-VTD 111
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
G+++ + L +L +L+L C+ GGL +L GL +L SLN+ I + LS L
Sbjct: 112 AGLQSISSLEHLRELNLAGCSVTDGGLGSLAGLTELTSLNLNDTQ-INGLGLVYLSKLNR 170
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L++L + + V I L GL+ L +L+L G + +++ L SL L LN +
Sbjct: 171 LEALYLQNTVVDFESIPPLSGLESLKILHLAGTKTGGGIVRAITGLPSLERLYLNGTSIK 230
Query: 242 DDGCEKFSKI-----GSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
D+ + + K L + ++D L + L +L+ L
Sbjct: 231 DEDIPALAAVLAQNCPHFKGLFVEKTALSDAALEPMHPLADLKEFTL 277
>gi|320165522|gb|EFW42421.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 743
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 96/370 (25%), Positives = 163/370 (44%), Gaps = 26/370 (7%)
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
+ NN+IT AFAGL L +L+L+ N IT
Sbjct: 64 YLNNNSITIISASAFAGLTALTRLELKT-------------------------NQITSFP 98
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
GLT L+ L ++ +++T GL L L L +T+ + ++ +L
Sbjct: 99 ADTFIGLTFLRELFLNYNQITSFPADTFIGLTFLRELFLNYNQITSIPTSAFASQTALIQ 158
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L+L ++ + F + LK L + FN+ T GLT L L+L + I
Sbjct: 159 LDLRSNLITSFPADTFIGLTMLKNLYMDFNQFTSIPANTFTGLTALTFLSLHTNQIASIP 218
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
TGL L L+L++ Q+ ++ + +GLT L ++L+ I+ S +GL++L+
Sbjct: 219 ANTFTGLTALTFLDLTNNQITNTSVDAFTGLTALTHLDLTDNRITTISASTFSGLTALRL 278
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
LNL+ QIT + LT L +L L +I+ + L + + +T
Sbjct: 279 LNLNGNQITTISANTFSGLTTLNYLFLTTNQISSISTSAFAGLTVLTEMSLNNNSITSIS 338
Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 472
L++LT+L+LS N +T + + LT L +L++++++ITS L L
Sbjct: 339 ANTFAVLTALTILDLSDN-QITSIPADAFASLTALDTLSLNDNQITSIPANAFTSLTTLH 397
Query: 473 SLTLESCKVT 482
L LE+ +T
Sbjct: 398 RLPLENNPLT 407
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 126/284 (44%), Gaps = 1/284 (0%)
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
GL LT L L+ +T+ D+ L L L LN Q++ + F + L+ L L
Sbjct: 78 FAGLTALTRLELKTNQITSFPADTFIGLTFLRELFLNYNQITSFPADTFIGLTFLRELFL 137
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
+N+IT T L L+L S I GL LK L + Q S
Sbjct: 138 NYNQITSIPTSAFASQTALIQLDLRSNLITSFPADTFIGLTMLKNLYMDFNQFTSIPANT 197
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
+GLT L ++L I+ GL++L L+L QIT+T + A T LT LTHLDL
Sbjct: 198 FTGLTALTFLSLHTNQIASIPANTFTGLTALTFLDLTNNQITNTSVDAFTGLTALTHLDL 257
Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
RIT A+ LR L + G +T L++L L L+ N ++ +
Sbjct: 258 TDNRITTISASTFSGLTALRLLNLNGNQITTISANTFSGLTTLNYLFLTTN-QISSISTS 316
Query: 440 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 483
+GLT L ++++N+ ITS L L L L ++T+
Sbjct: 317 AFAGLTVLTEMSLNNNSITSISANTFAVLTALTILDLSDNQITS 360
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 99/351 (28%), Positives = 146/351 (41%), Gaps = 35/351 (9%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
L++N QI+ + GL+ L L F N IT+ AFA L++LDL
Sbjct: 113 LNYN---QITSFPADTFIGLTFLREL-FLNYNQITSIPTSAFASQTALIQLDLRS----- 163
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
N IT GLT LK+L + ++ T GL
Sbjct: 164 --------------------NLITSFPADTFIGLTMLKNLYMDFNQFTSIPANTFTGLTA 203
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
LT L+L + + ++ + L +L +L+L Q+++ + F+ + +L L+L N IT
Sbjct: 204 LTFLSLHTNQIASIPANTFTGLTALTFLDLTNNQITNTSVDAFTGLTALTHLDLTDNRIT 263
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
GLT L LNL+ I +GL L L L+ Q+ S +GLT
Sbjct: 264 TISASTFSGLTALRLLNLNGNQITTISANTFSGLTTLNYLFLTTNQISSISTSAFAGLTV 323
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L ++L+ I+ S A L++L L+L QIT A SLT L L L +IT
Sbjct: 324 LTEMSLNNNSITSISANTFAVLTALTILDLSDNQITSIPADAFASLTALDTLSLNDNQIT 383
Query: 386 DSGAAYLRNFKNLRSLEICGGGLTD------AGVKHIKDLSSLTLLNLSQN 430
A + L L + LT G+ + LSS + NLS N
Sbjct: 384 SIPANAFTSLTTLHRLPLENNPLTTLPPGLFKGLPYGLLLSSSFMPNLSPN 434
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 109/256 (42%), Gaps = 1/256 (0%)
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
G+ L LN ++ F+ + +L L L N+IT GLT L L L+
Sbjct: 58 GTTTQLYLNNNSITIISASAFAGLTALTRLELKTNQITSFPADTFIGLTFLRELFLNYNQ 117
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
I GL L+ L L+ Q+ S + T L ++L I+ GL
Sbjct: 118 ITSFPADTFIGLTFLRELFLNYNQITSIPTSAFASQTALIQLDLRSNLITSFPADTFIGL 177
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
+ LK+L +D Q T T LT LT L L +I A L L++
Sbjct: 178 TMLKNLYMDFNQFTSIPANTFTGLTALTFLSLHTNQIASIPANTFTGLTALTFLDLTNNQ 237
Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 467
+T+ V L++LT L+L+ N +T + SGLT L LN++ ++IT+
Sbjct: 238 ITNTSVDAFTGLTALTHLDLTDN-RITTISASTFSGLTALRLLNLNGNQITTISANTFSG 296
Query: 468 LKNLRSLTLESCKVTA 483
L L L L + ++++
Sbjct: 297 LTTLNYLFLTTNQISS 312
>gi|395845618|ref|XP_003795524.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 3 [Otolemur
garnettii]
Length = 387
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 108/324 (33%), Positives = 173/324 (53%), Gaps = 48/324 (14%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+ G+ N++SL +S C +TD+G+ + + +GSL LN
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123
Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
L+ C Q++D + ++ + L+VL LG + IT+ L+ + GL L+SLNL SC +
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183
Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
D G+ +L G+ L+ L L D Q + L+H+S GLT L +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243
Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
L L+ + SL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302
Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362
Query: 452 VSN-SRITSAGLRHLKPLKNLRSL 474
+ +RIT GL + L L+ L
Sbjct: 363 LYGCTRITKRGLERITQLPCLKRL 386
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 166/327 (50%), Gaps = 36/327 (11%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A + +A G L L L CQ L+D + S+ + L++LNL F
Sbjct: 180 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 239
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
I+D L+HL + +L SLNL SC I D G+++L G L L++S +VG L +
Sbjct: 240 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 299
Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
++ GL L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT
Sbjct: 300 IAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 359
Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSL 401
+DL+G RIT G + L+ L
Sbjct: 360 GIDLYGCTRITKRGLERITQLPCLKRL 386
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 94/305 (30%), Positives = 162/305 (53%), Gaps = 32/305 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 324
Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 325 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLP 381
Query: 349 SLKSL 353
LK L
Sbjct: 382 CLKRL 386
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 34/246 (13%)
Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 322
++G+ N+ESLNL C G+G + + L L C +++D+ +G ++L G
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 144
Query: 323 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 372
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 145 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 200
Query: 373 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 426
GL L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LN
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 259
Query: 427 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 483
L N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++
Sbjct: 260 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319
Query: 484 NDIKRL 489
+ I R+
Sbjct: 320 DGINRM 325
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 90/166 (54%), Gaps = 7/166 (4%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSAL 227
L I C ++TD G+ + + L +LT ++L GC +T L+ ++ L
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 380
>gi|327272147|ref|XP_003220847.1| PREDICTED: f-box/LRR-repeat protein 14-like [Anolis carolinensis]
Length = 400
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 108/315 (34%), Positives = 172/315 (54%), Gaps = 26/315 (8%)
Query: 200 LKGLQKLTLLNLEGCP-VTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSK-IGSL 254
++G+ ++ LNL GC +T L ++ + SL LNL+ C Q++D + ++ + L
Sbjct: 86 IQGMAEIESLNLSGCYNLTDNGLGHAFVAEISSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 255 KVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN--------LK 303
+ L LG + IT+ L+ + GL L+SLNL SC + D G+ +L G+ L+
Sbjct: 146 EALELGGCSNITNTGLLLVAWGLPRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 304 CLELSDTQVGSS-GLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQ 359
L L D Q S L+HLS GL+ L +NLSF G ISD L L+ +S L+ LNL +
Sbjct: 206 QLTLQDCQKLSDLSLKHLSRGLSRLRQLNLSFCGGISDAGLLHLSHMSCLRVLNLRSCDN 265
Query: 360 ITDTGLAAL-TSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KH 415
I+DTG+ L T L+ LD+ F ++ D AY+ + LRSL +C ++D G+ +
Sbjct: 266 ISDTGIMHLATGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINRM 325
Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRS 473
++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L L+
Sbjct: 326 VRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKV 385
Query: 474 LTLESCKVTANDIKR 488
L L ++T ++ R
Sbjct: 386 LNLGLWQMTESEKVR 400
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 103/331 (31%), Positives = 170/331 (51%), Gaps = 56/331 (16%)
Query: 61 SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
S++LSG ++TD+GL H + + S+L++L+ + C QI+D L +
Sbjct: 94 SLNLSGCYNLTDNGLGHAFVAEISSLRALNLSLCKQITDSSLGRI--------------- 138
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
AQ +K L L+L C+ I G L+ GL +L+SLN++ C ++D +
Sbjct: 139 ---AQYLKG------LEALELGGCSNITNTGLLLVAWGLPRLKSLNLRSCRHLSDVGIGH 189
Query: 176 LSGLTN--------LKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSL 224
L+G+T L+ L + C K++D + +L +GL +L LNL C ++ A L L
Sbjct: 190 LAGMTRSAAEGCLGLEQLTLQDCQKLSDLSLKHLSRGLSRLRQLNLSFCGGISDAGLLHL 249
Query: 225 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLE 279
S + L LNL C +SD G + GSL++ L++ F +++ D+ L ++ +GL L
Sbjct: 250 SHMSCLRVLNLRSCDNISDTGIMHLAT-GSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLR 308
Query: 280 SLNLDSCGIGDEGL----VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLS 332
SL+L SC I DEG+ + GL L +C+ ++D + HLS LT ++
Sbjct: 309 SLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC- 366
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
T I+ L ++ L LK LNL Q+T++
Sbjct: 367 -TRITKRGLERITQLPCLKVLNLGLWQMTES 396
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 164/327 (50%), Gaps = 32/327 (9%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM + L+L C + G + + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------EIESLNLSGCYNLTDNGLGHAFVAEISSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPV 216
LN+ C ITDS + ++ L L++L++ CS +T++G+ + GL +L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKGLEALELGGCSNITNTGLLLVAWGLPRLKSLNLRSCRH 181
Query: 217 TA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 264
+ A + +A G L L L CQ LSD + S+ + L+ LNL F I
Sbjct: 182 LSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLSDLSLKHLSRGLSRLRQLNLSFCGGI 241
Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL-TGLCNLKCLELSDT-QVGSSGLRHLS 321
+D L+HL ++ L LNL SC I D G+++L TG L L++S +VG L +++
Sbjct: 242 SDAGLLHLSHMSCLRVLNLRSCDNISDTGIMHLATGSLRLSGLDVSFCDKVGDQSLAYIA 301
Query: 322 -GLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHL 377
GL L S++L ISD G R + + L++LN+ +ITD GL + L+ LT +
Sbjct: 302 QGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGI 361
Query: 378 DLFG-ARITDSGAAYLRNFKNLRSLEI 403
DL+G RIT G + L+ L +
Sbjct: 362 DLYGCTRITKRGLERITQLPCLKVLNL 388
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 125/246 (50%), Gaps = 34/246 (13%)
Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 322
++G+ +ESLNL C G+G + ++ L L C +++D+ +G ++L G
Sbjct: 86 IQGMAEIESLNLSGCYNLTDNGLGHAFVAEISSLRALNLSLCKQITDSSLGRIA-QYLKG 144
Query: 323 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 372
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 145 LEALELGGCSNITNTGL----LLVAWGLPRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 200
Query: 373 --GLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLN 426
GL L L +++D +L R LR L + CGG ++DAG+ H+ +S L +LN
Sbjct: 201 CLGLEQLTLQDCQKLSDLSLKHLSRGLSRLRQLNLSFCGG-ISDAGLLHLSHMSCLRVLN 259
Query: 427 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 483
L N++D + L +G L L+VS ++ L ++ + L LRSL+L SC ++
Sbjct: 260 LRSCDNISDTGIMHLATGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISD 319
Query: 484 NDIKRL 489
I R+
Sbjct: 320 EGINRM 325
>gi|290975915|ref|XP_002670687.1| predicted protein [Naegleria gruberi]
gi|284084248|gb|EFC37943.1| predicted protein [Naegleria gruberi]
Length = 402
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 113/250 (45%), Gaps = 1/250 (0%)
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L +L IS + + + G ++ L++LTLLN+ + + L L YL++++ +
Sbjct: 130 LTTLYISRNNIENDGAKHISALKQLTLLNISSNNIEEEGAKYIGKLEKLTYLDISKNDIR 189
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
+G S++ L L + N I +E HL LTNL L G EG +++ +
Sbjct: 190 SNGALYISELKQLTSLVISSNNIDEEGAAHLIKLTNLTELETVRNEFGAEGAKHISEMKQ 249
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG-SLRKLAGLSSLKSLNLDARQI 360
L L ++D +G G +++S + L +N+ I+D + L+ L L ++ I
Sbjct: 250 LINLNINDNFIGDEGAKYISEMKQLTILNIGSNEITDRVNFENFGQLNQLTELYIEDNSI 309
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
++ L L LD+ G + GA Y+ L LEI L + G KHI +
Sbjct: 310 QTNACKYISQLQNLNLLDISGNNVDAEGAKYISQMNQLTELEIHTNSLGNEGAKHISTMK 369
Query: 421 SLTLLNLSQN 430
L L L N
Sbjct: 370 ELEYLYLCDN 379
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 120/246 (48%), Gaps = 2/246 (0%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+SAL L LN++ + ++G + K+ L L++ N+I +++ L L SL +
Sbjct: 148 ISALKQLTLLNISSNNIEEEGAKYIGKLEKLTYLDISKNDIRSNGALYISELKQLTSLVI 207
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
S I +EG +L L NL LE + G+ G +H+S + L ++N++ I D +
Sbjct: 208 SSNNIDEEGAAHLIKLTNLTELETVRNEFGAEGAKHISEMKQLINLNINDNFIGDEGAKY 267
Query: 344 LAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
++ + L LN+ + +ITD L LT L + I + Y+ +NL L+
Sbjct: 268 ISEMKQLTILNIGSNEITDRVNFENFGQLNQLTELYIEDNSIQTNACKYISQLQNLNLLD 327
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
I G + G K+I ++ LT L + N L ++ + IS + L L + ++ ++
Sbjct: 328 ISGNNVDAEGAKYISQMNQLTELEIHTNS-LGNEGAKHISTMKELEYLYLCDNDVSVEVK 386
Query: 463 RHLKPL 468
+H++ +
Sbjct: 387 QHIREI 392
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 97/213 (45%), Gaps = 2/213 (0%)
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L +L + I ++G +++ L L L +S + G +++ L L +++S I
Sbjct: 130 LTTLYISRNNIENDGAKHISALKQLTLLNISSNNIEEEGAKYIGKLEKLTYLDISKNDIR 189
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
++ L L SL + + I + G A L LT LT L+ GA ++ K
Sbjct: 190 SNGALYISELKQLTSLVISSNNIDEEGAAHLIKLTNLTELETVRNEFGAEGAKHISEMKQ 249
Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSR 456
L +L I + D G K+I ++ LT+LN+ N +TD+ E L L L + ++
Sbjct: 250 LINLNINDNFIGDEGAKYISEMKQLTILNIGSN-EITDRVNFENFGQLNQLTELYIEDNS 308
Query: 457 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
I + +++ L+NL L + V A K +
Sbjct: 309 IQTNACKYISQLQNLNLLDISGNNVDAEGAKYI 341
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 111/264 (42%), Gaps = 29/264 (10%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC-TRIHGGLVNLK 152
I + G +H+ L LT L+ NN I +G K L L LD+ + R +G L
Sbjct: 140 IENDGAKHISALKQLTLLNISSNN-IEEEGAKYIGKLEKLTYLDISKNDIRSNGALY--- 195
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+S L L SL IS + + + G A+L L LT L
Sbjct: 196 -----------------------ISELKQLTSLVISSNNIDEEGAAHLIKLTNLTELETV 232
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-LVH 271
A +S + L LN+N + D+G + S++ L +LN+G NEITD +
Sbjct: 233 RNEFGAEGAKHISEMKQLINLNINDNFIGDEGAKYISEMKQLTILNIGSNEITDRVNFEN 292
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
L L L ++ I ++ L NL L++S V + G +++S + L + +
Sbjct: 293 FGQLNQLTELYIEDNSIQTNACKYISQLQNLNLLDISGNNVDAEGAKYISQMNQLTELEI 352
Query: 332 SFTGISDGSLRKLAGLSSLKSLNL 355
+ + + ++ + L+ L L
Sbjct: 353 HTNSLGNEGAKHISTMKELEYLYL 376
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 455
K+L +L I + + G KHI L LTLLN+S N N+ ++ + I L L L++S +
Sbjct: 128 KSLTTLYISRNNIENDGAKHISALKQLTLLNISSN-NIEEEGAKYIGKLEKLTYLDISKN 186
Query: 456 RITSAGLRHLKPLKNLRSLTLESCKV 481
I S G ++ LK L SL + S +
Sbjct: 187 DIRSNGALYISELKQLTSLVISSNNI 212
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 93/223 (41%), Gaps = 28/223 (12%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+ +S +++ + G HL L+NLT L
Sbjct: 197 SELKQLTSLVISSNNIDEE-------------------------GAAHLIKLTNLTELET 231
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS-D 172
R N A+G K + + L+ L++ G + + +L LNI N ITD +
Sbjct: 232 VR-NEFGAEGAKHISEMKQLINLNINDNFIGDEGAKYISEMKQLTILNI-GSNEITDRVN 289
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ L L L I + + + Y+ LQ L LL++ G V A +S + L
Sbjct: 290 FENFGQLNQLTELYIEDNSIQTNACKYISQLQNLNLLDISGNNVDAEGAKYISQMNQLTE 349
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
L ++ L ++G + S + L+ L L N+++ E H++ +
Sbjct: 350 LEIHTNSLGNEGAKHISTMKELEYLYLCDNDVSVEVKQHIREI 392
>gi|41393121|ref|NP_958890.1| F-box and leucine-rich repeat protein 14a [Danio rerio]
gi|37681873|gb|AAQ97814.1| hypothetical protein MGC40195 [Danio rerio]
gi|66911816|gb|AAH96775.1| F-box and leucine-rich repeat protein 14a [Danio rerio]
gi|157423043|gb|AAI53540.1| Fbxl14a protein [Danio rerio]
gi|182891432|gb|AAI64514.1| Fbxl14a protein [Danio rerio]
Length = 411
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 112/346 (32%), Positives = 177/346 (51%), Gaps = 34/346 (9%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 68 RGIKKVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQDIPSLRI 121
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC-P 215
LN+ C ITDS + ++ L NL+ L + CS +T++G+ + GL L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRH 181
Query: 216 VTAACLDSLSALG--------SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 264
V+ + L+ + +L +L L CQ L+D + SK + LKVLNL F I
Sbjct: 182 VSDVGIGHLAGMTRSAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKVLNLSFCGGI 241
Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS 321
+D ++HL +T L +LNL SC I D G+++L+ G L L++S +VG L +++
Sbjct: 242 SDAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYGLDVSFCDKVGDQSLAYIA 301
Query: 322 -GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHL 377
GL L+S++L ISD + R + + LK+LN+ +ITD GL + LT LT +
Sbjct: 302 QGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGI 361
Query: 378 DLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
DL+G +IT G + L+ L + +T+ VK + D S +
Sbjct: 362 DLYGCTKITKRGLERITQLPCLKVLNLGLWQMTE--VKGLGDASEI 405
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 103/332 (31%), Positives = 176/332 (53%), Gaps = 48/332 (14%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ G+ N++SL +S C +TD+G+ A+++ + L +LNL C
Sbjct: 86 IQGMPNIESLNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLCK----------------- 128
Query: 233 LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GI 288
Q++D + ++ + +L++L+LG + IT+ L+ + GL NL+SLNL SC +
Sbjct: 129 ------QITDSSLGRIAQYLKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHV 182
Query: 289 GDEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-IS 337
D G+ +L G+ L+ L L D Q + L+H+S GL L+ +NLSF G IS
Sbjct: 183 SDVGIGHLAGMTRSAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKVLNLSFCGGIS 242
Query: 338 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAALT-SLTGLTHLDL-FGARITDSGAAYL-R 393
D + L+ ++ L +LNL + I+DTG+ L+ L LD+ F ++ D AY+ +
Sbjct: 243 DAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYGLDVSFCDKVGDQSLAYIAQ 302
Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ LT L ++
Sbjct: 303 GLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGID 362
Query: 452 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVT 482
+ ++IT GL + L L+ L L ++T
Sbjct: 363 LYGCTKITKRGLERITQLPCLKVLNLGLWQMT 394
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 105/328 (32%), Positives = 172/328 (52%), Gaps = 50/328 (15%)
Query: 61 SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
S++LSG ++TD+GL H ++D +L+ L+ + C QI+D L +
Sbjct: 94 SLNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLCKQITDSSLGRI--------------- 138
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
AQ +K NL LDL C+ I G L+ GL L+SLN++ C ++D +
Sbjct: 139 ---AQYLK------NLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGH 189
Query: 176 LSGLT--------NLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSL 224
L+G+T L+ L + C K+TD + ++ KGL KL +LNL C ++ A + L
Sbjct: 190 LAGMTRSAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKVLNLSFCGGISDAGMIHL 249
Query: 225 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLE 279
S + L+ LNL C +SD G S +G+L++ L++ F +++ D+ L ++ +GL L+
Sbjct: 250 SHMTQLWTLNLRSCDNISDTGIMHLS-MGALRLYGLDVSFCDKVGDQSLAYIAQGLYQLK 308
Query: 280 SLNLDSCGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTG 335
SL+L SC I D+G+ + + LK L + ++ GL ++ LT L I+L T
Sbjct: 309 SLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTK 368
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDT 363
I+ L ++ L LK LNL Q+T+
Sbjct: 369 ITKRGLERITQLPCLKVLNLGLWQMTEV 396
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 140/283 (49%), Gaps = 33/283 (11%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L +DL G S++T++GL+ + NL+SL+ C +SD G+ H
Sbjct: 130 ITDSSLGRIAQYLKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGH 189
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L G++ A G + L L L+ C ++ L ++ KGL KL+
Sbjct: 190 LAGMTR-----------------SAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKV 232
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
LN+ +C I+D+ M LS +T L +L + SC ++D+GI +L G +L L++ C
Sbjct: 233 LNLSFCGGISDAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYGLDVSFCDKV 292
Query: 218 AACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVH 271
SL+ + Y L+L C +SDDG + + + LK LN+G ITD+ L
Sbjct: 293 GD--QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLEL 350
Query: 272 LK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQV 312
+ LT L ++L C I GL +T L LK L L Q+
Sbjct: 351 IADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQM 393
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 126/245 (51%), Gaps = 32/245 (13%)
Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 322
++G+ N+ESLNL C G+G + ++ L L C +++D+ +G R
Sbjct: 86 IQGMPNIESLNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLCKQITDSSLG----RIAQY 141
Query: 323 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 372
L NLE ++L + I++ L +A GL +LKSLNL + R ++D G+ L +T
Sbjct: 142 LKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGC 201
Query: 373 -GLTHLDLFG-ARITDSGAAYLR---NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
L HL L ++TD ++ N + +L CGG ++DAG+ H+ ++ L LNL
Sbjct: 202 LTLEHLTLQDCQKLTDLSLKHISKGLNKLKVLNLSFCGG-ISDAGMIHLSHMTQLWTLNL 260
Query: 428 SQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 484
N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++ +
Sbjct: 261 RSCDNISDTGIMHLSMGALRLYGLDVSFCDKVGDQSLAYIAQGLYQLKSLSLCSCHISDD 320
Query: 485 DIKRL 489
I R+
Sbjct: 321 GINRM 325
>gi|198456933|ref|XP_001360491.2| GA22149 [Drosophila pseudoobscura pseudoobscura]
gi|198135799|gb|EAL25066.2| GA22149 [Drosophila pseudoobscura pseudoobscura]
Length = 529
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 122/374 (32%), Positives = 189/374 (50%), Gaps = 68/374 (18%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 193 SPSLFNCLV-RRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 234
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAI 119
+V D L H D NL++LD + C QI+D L +HLR NL +L I
Sbjct: 235 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLR---NLENLELGGCCNI 291
Query: 120 TAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCIT 169
T G+ A GL L L+L C I G+ +L G ++LE L ++ C ++
Sbjct: 292 TNTGLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEHLGLQDCQRLS 351
Query: 170 DSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
D + ++ GLT+LKS+ +S C VTDSG+ +L + KL LNL C D++S +
Sbjct: 352 DEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDI 404
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDS 285
G + L++ G S I SL V F ++I+D+ L H+ +GL L SL+L+
Sbjct: 405 GMAY--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQ 449
Query: 286 CGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSL 341
C I D+G+V + L L+ L + +++ GL+ L+ LTNL++I+L T +S +
Sbjct: 450 CQITDQGMVKIAKSLQELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGI 509
Query: 342 RKLAGLSSLKSLNL 355
+ L L+ LNL
Sbjct: 510 DIIMKLPKLQKLNL 523
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 108/340 (31%), Positives = 165/340 (48%), Gaps = 55/340 (16%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
G+ L SLN+ C + D ++ L NLK+L +S C ++TD+ + + + L+ L
Sbjct: 223 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLEN 282
Query: 209 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L GC L L L +LNL C +SD G IG L GF+ T
Sbjct: 283 LELGGCCNITNTGLLLIAWGLKKLRHLNLRSCWHISDQG------IGHLA----GFSRET 332
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLT 324
E +L L+ G+ D C LSD +G H++ GLT
Sbjct: 333 AE-----------GNLQLEHLGLQD-------------CQRLSDEALG-----HIAQGLT 363
Query: 325 NLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-F 380
+L+SINLSF ++D L+ LA + L+ LNL + I+D G+A LT +G+ LD+ F
Sbjct: 364 SLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSF 423
Query: 381 GARITDSGAAYL-RNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTL 438
+I+D ++ + LRSL + +TD G VK K L L LN+ Q +TDK L
Sbjct: 424 CDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMVKIAKSLQELENLNIGQCSRITDKGL 483
Query: 439 E-LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 476
+ L LT L ++++ ++++S G+ + L L+ L L
Sbjct: 484 QTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 523
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 112/209 (53%), Gaps = 16/209 (7%)
Query: 69 VTDSGLIHLKDCS--------NLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAI 119
++D G+ HL S L+ L C ++SD L H+ +GL++L S++ ++
Sbjct: 317 ISDQGIGHLAGFSRETAEGNLQLEHLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSV 376
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLESLNIKWCNCITDSDMKPLS 177
T G+K A + L +L+L C I G+ L +G + SL++ +C+ I+D + ++
Sbjct: 377 TDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIA 436
Query: 178 -GLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSA-LGSLFYL 233
GL L+SL ++ ++TD G+ + K LQ+L LN+ C +T L +L+ L +L +
Sbjct: 437 QGLYRLRSLSLNQCQITDQGMVKIAKSLQELENLNIGQCSRITDKGLQTLAEDLTNLKTI 496
Query: 234 NLNRC-QLSDDGCEKFSKIGSLKVLNLGF 261
+L C QLS G + K+ L+ LNLG
Sbjct: 497 DLYGCTQLSSKGIDIIMKLPKLQKLNLGL 525
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 116/237 (48%), Gaps = 34/237 (14%)
Query: 274 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 324
G+ L SLNL C +G V+L L L C +++DT +G +HL L
Sbjct: 223 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLE 281
Query: 325 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-------- 372
NLE N++ TG+ L GL L+ LNL + I+D G+ L +
Sbjct: 282 NLELGGCCNITNTGL----LLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNL 337
Query: 373 GLTHLDLFG-ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 428
L HL L R++D ++ + +L+S L C +TD+G+KH+ + L LNL
Sbjct: 338 QLEHLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 396
Query: 429 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 482
N++D + L G +G+ SL+VS +I+ L H+ + L LRSL+L C++T
Sbjct: 397 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 453
>gi|417399805|gb|JAA46888.1| Putative f-box/lrr-repeat protein 14 [Desmodus rotundus]
Length = 368
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 110/339 (32%), Positives = 179/339 (52%), Gaps = 50/339 (14%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ G+ N++SL +S C +TD+G+ A+++ + L LNL C
Sbjct: 54 IQGMANIESLNLSGCYNLTDNGLGHAFVQEISSLRALNLSLCK----------------- 96
Query: 233 LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GI 288
Q++D + ++ + L+VL LG + IT+ L+ + GL L+SLNL SC +
Sbjct: 97 ------QITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHL 150
Query: 289 GDEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-IS 337
D G+ +L G+ L+ L L D Q + L+H+S GLT L +NLSF G IS
Sbjct: 151 SDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGIS 210
Query: 338 DGSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL- 392
D L L+ + SL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+
Sbjct: 211 DAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIA 269
Query: 393 RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSL 450
+ L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L +
Sbjct: 270 QGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGI 329
Query: 451 NVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
++ +RIT GL + L L+ L L ++T ++ R
Sbjct: 330 DLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKVR 368
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 170/315 (53%), Gaps = 32/315 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ +S+L +L+ IT + A + L
Sbjct: 54 IQGMANIESLNLSGCYNLTDNGLGHAFVQEISSLRALNLSLCKQITDSSLGRIAQYLKGL 113
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 114 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 173
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 174 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 233
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 234 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINR 292
Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 293 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYG--CTRITKRGLERITQLP 349
Query: 349 SLKSLNLDARQITDT 363
LK LNL Q+TD+
Sbjct: 350 CLKVLNLGLWQMTDS 364
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 107/337 (31%), Positives = 171/337 (50%), Gaps = 36/337 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 36 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEISSLRA 89
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 90 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 147
Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A + +A G L L L CQ L+D + S+ + L++LNL F
Sbjct: 148 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 207
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
I+D L+HL + +L SLNL SC I D G+++L G L L++S +VG L +
Sbjct: 208 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 267
Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
++ GL L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT
Sbjct: 268 IAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 327
Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
+DL+G RIT G + L+ L + +TD+
Sbjct: 328 GIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 364
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 183 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 242
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 243 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 302
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 303 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 339
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 340 RGLERITQLPCLKVLNLGLWQMTD 363
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 125/246 (50%), Gaps = 34/246 (13%)
Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 322
++G+ N+ESLNL C G+G + ++ L L C +++D+ +G ++L G
Sbjct: 54 IQGMANIESLNLSGCYNLTDNGLGHAFVQEISSLRALNLSLCKQITDSSLGRIA-QYLKG 112
Query: 323 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 372
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 113 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 168
Query: 373 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 426
GL L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LN
Sbjct: 169 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 227
Query: 427 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 483
L N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++
Sbjct: 228 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 287
Query: 484 NDIKRL 489
+ I R+
Sbjct: 288 DGINRM 293
>gi|343419347|emb|CCD19427.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
Length = 1478
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 134/376 (35%), Positives = 192/376 (51%), Gaps = 36/376 (9%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+DV+ LI SNL++LD + C I+D + L +SNL SL IT +
Sbjct: 1107 TDVSPLSLI-----SNLRTLDLSHCTGITD--VSPLSLMSNLCSLYLSHCTGIT--DVPP 1157
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
+ LI L KLDL CT I + L L +LE+LN+ +C IT D+ PLS ++NL SL
Sbjct: 1158 LSMLIRLEKLDLSGCTGI-TDVSPLSKLSRLETLNLMYCTGIT--DVSPLSLMSNLCSLY 1214
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
+S C+ +TD ++ L L +L L+L GC + LS L L LNL C D
Sbjct: 1215 LSHCTGITD--VSPLSMLIRLEKLDLSGCTGITD-VSPLSKLSRLETLNLMYCTGITD-V 1270
Query: 246 EKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLK 303
SK+ L+ LNL + ITD + L ++NL SL L C GI D + L+ L L+
Sbjct: 1271 SPLSKLSRLETLNLMYCTGITD--VSPLSLMSNLCSLYLSHCTGITD--VPPLSKLSRLE 1326
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQIT 361
L L G + + LS L+ LE++NL + TGI+D S L+ +S+L++L+L IT
Sbjct: 1327 TLNLMYC-TGITDVSPLSKLSRLETLNLMYCTGITDVS--PLSLISNLRTLDLSHCTGIT 1383
Query: 362 DTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDL 419
D ++ L+ ++ L L L ITD L L ++ G G+TD V + L
Sbjct: 1384 D--VSPLSLMSNLCSLYLSHCTGITD--VPPLSMLIRLEKSDLSGCTGITD--VSPLSKL 1437
Query: 420 SSLTLLNLSQNCNLTD 435
S L LNL +TD
Sbjct: 1438 SRLETLNLMYCTGITD 1453
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 127/402 (31%), Positives = 202/402 (50%), Gaps = 62/402 (15%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
S L++L+ +C I+D + L +S+L +L+ IT + + LI L LDL
Sbjct: 725 SRLETLNLMYCTGITD--VSPLSKMSSLYTLNLSYCTGIT--DVSPLSMLIRLETLDLTG 780
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAY 199
CT I + L L +LE+LN+++C IT D+ PLS L+ L++L + C+ +TD ++
Sbjct: 781 CTGI-TDVSPLSKLSRLETLNLRYCTGIT--DVSPLSKLSRLETLNLMYCTGITD--VSP 835
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
L L +L LNL C + LS + +L L+L+ C
Sbjct: 836 LSKLSRLETLNLMYCTGITD-VSPLSLISNLRTLDLSHCT-------------------- 874
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
G +++ L ++NL SL L C GI D + L+ L L+ L+LS G + +
Sbjct: 875 GITDVSP-----LSLMSNLCSLYLSHCTGITD--VPPLSMLIRLEKLDLSGC-TGITDVS 926
Query: 319 HLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
LS L+ LE++NL + TGI+D S L+ LS L++LNL + TG+ ++ L+ L+ L
Sbjct: 927 PLSKLSRLETLNLMYCTGITDVS--PLSKLSRLETLNL----MYCTGITDVSPLSKLSRL 980
Query: 378 D----LFGARITDSGAAYLRNFKNLRSLEIC-GGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
+ ++ ITD + L +F NLR+L++ G+TD V + L L L+LS
Sbjct: 981 ETLNLMYCTGITD--VSPLSDFINLRTLDLSFYTGITD--VSPLSMLIRLENLSLSNIAG 1036
Query: 433 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
+TD +S L+ L+ LNV G+ + PL L SL
Sbjct: 1037 ITD-----VSPLSTLIRLNVLYLS-GCTGITDVSPLSKLSSL 1072
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 121/399 (30%), Positives = 188/399 (47%), Gaps = 51/399 (12%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+ L+ LD + C++ D L H G+++++ LS L +L LDL
Sbjct: 415 ATLRDLDVSKCLRTLD--LSHCTGITDVSPLS----------------ELSSLRTLDLSH 456
Query: 141 CTRIHGGLVNLKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
CT G+ ++ L KL SL +C +D+ PLS L+ L+ L +S SG+
Sbjct: 457 CT----GITDVSPLSKLSSLRTFDLSHCTGITDVSPLSTLSGLEVLNLSGCTGVASGVDS 512
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
L L+ L L L + A L + L L L+L+ C S + L+VLNL
Sbjct: 513 LCSLRMLRELRLSRLAINDAVLRDIVVLKCLRTLDLSHCT-GITNVSPLSTLSGLEVLNL 571
Query: 260 -GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ--VGSSG 316
G +ITD + L L + +LNL C G+ +++ L L LE + G +
Sbjct: 572 SGCADITD--ISPLSDLNIMHTLNLSFC----TGITDVSPLSKLSRLETLNLMYCTGITD 625
Query: 317 LRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGL 374
+ LS ++NL +++LS TGI+D S L+ +S+L++L+L ITD + L+ L L
Sbjct: 626 VSPLSLISNLRTLDLSHCTGITDVS--PLSLISNLRTLDLSHCTGITD--VPPLSMLIRL 681
Query: 375 THLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCN 432
LDL G ITD + L L +L + G+TD V + LS L LNL
Sbjct: 682 EKLDLSGCTGITD--VSPLSKLSRLETLNLMYCTGITD--VSPLSKLSRLETLNLMYCTG 737
Query: 433 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 471
+TD + +S ++ L +LN+S G+ + PL L
Sbjct: 738 ITD--VSPLSKMSSLYTLNLSY----CTGITDVSPLSML 770
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 139/485 (28%), Positives = 220/485 (45%), Gaps = 61/485 (12%)
Query: 21 TEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDC 80
+ SL RDC + CLG V+++ + G S L+ L+ ++TD L + C
Sbjct: 217 SHTSLTVGRDCFIP--CLGV---VSEEVL-----AGVSRLT--LNKVELTDRDLWRIHKC 264
Query: 81 SNLQSLDFNFC-------IQISDGG---------LEHLRGLSNLTSLSFRRNNAITAQGM 124
SNL++L C Q+ G E +RG+S L ++ +N + + +
Sbjct: 265 SNLKALSIEECTGRICLGTQMPHGNSPTRENCDDTERVRGISCLEEITI--SNCMNIKEI 322
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNL---KGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
K L + +L + N+ K +++LE + +C + ++PL+
Sbjct: 323 KGLNTLACISRLRFINSNISDDCVANISENKHILELE-----FQDCANITSLRPLANSQL 377
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
++SL IS +S I L L +L L L + A L L L L+L+ C
Sbjct: 378 IESLVISNCINLESEINVLAALNRLRELRLSRLAINDATLRDLDVSKCLRTLDLSHCTGI 437
Query: 242 DDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 299
D S++ SL+ L+L ITD + L L++L + +L C GI D + L+ L
Sbjct: 438 TD-VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTFDLSHCTGITD--VSPLSTL 492
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
L+ L LS +SG+ L L L + LS I+D LR + L L++L+L +
Sbjct: 493 SGLEVLNLSGCTGVASGVDSLCSLRMLRELRLSRLAINDAVLRDIVVLKCLRTLDL-SHC 551
Query: 360 ITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
T ++ L++L+GL L+L G A ITD N + +L C G+TD V +
Sbjct: 552 TGITNVSPLSTLSGLEVLNLSGCADITDISPLSDLNIMHTLNLSFC-TGITD--VSPLSK 608
Query: 419 LSSLTLLNLSQNCNLTD-KTLELISGLTGLVSLNVSNSRITSAGLRHLKPL---KNLRSL 474
LS L LNL +TD L LIS L +L++S+ G+ + PL NLR+L
Sbjct: 609 LSRLETLNLMYCTGITDVSPLSLISNLR---TLDLSH----CTGITDVSPLSLISNLRTL 661
Query: 475 TLESC 479
L C
Sbjct: 662 DLSHC 666
>gi|290972233|ref|XP_002668860.1| predicted protein [Naegleria gruberi]
gi|284082393|gb|EFC36116.1| predicted protein [Naegleria gruberi]
Length = 296
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 150/299 (50%), Gaps = 3/299 (1%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L +LN++ N I + K +S L N+ +L IS + + G Y+ +++LT L +
Sbjct: 1 MKQLTNLNVRH-NDIDEEGAKYISELMNVSTLDISGNSINKRGAKYIGEMKQLTDLGMYC 59
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
C + +S+L L +L++N + D+G + +I L L++ N+I E + ++
Sbjct: 60 CSIGVEGTKYISSLNQLTHLSININNIGDEGAKYIGQIKQLTDLSICDNKIGSEGVKYIG 119
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
L NL L + IGD G ++ + L L++S + G++++S + +L + +S
Sbjct: 120 QLKNLLKLYVSCNEIGDNGAQFISEMNQLTKLDISSVNITPIGIKYISKMEHLIDLMISD 179
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
I + ++ + L SL + I G L+ + LT+L++ I D G +L
Sbjct: 180 NNIDSMGAKHISQM-KLTSLEVYNNTIDVEGAKYLSEMEQLTNLEISKNEIGDKGVQFLS 238
Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
K L SL+I ++D G K+I ++ +L L++ N +++ +E + + L L++
Sbjct: 239 GMKQLTSLDINENKISDVGAKYILEMKNLIDLSVFDN-EISEDIIERLREMKQLTYLDI 296
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/289 (23%), Positives = 141/289 (48%), Gaps = 28/289 (9%)
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
LN+ + ++G + S++ ++ L++ N I ++ + L L + C IG EG
Sbjct: 7 LNVRHNDIDEEGAKYISELMNVSTLDISGNSINKRGAKYIGEMKQLTDLGMYCCSIGVEG 66
Query: 293 LVNLTGLCNLKCLELS------------------------DTQVGSSGLRHLSGLTNLES 328
++ L L L ++ D ++GS G++++ L NL
Sbjct: 67 TKYISSLNQLTHLSININNIGDEGAKYIGQIKQLTDLSICDNKIGSEGVKYIGQLKNLLK 126
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
+ +S I D + ++ ++ L L++ + IT G+ ++ + L L + I G
Sbjct: 127 LYVSCNEIGDNGAQFISEMNQLTKLDISSVNITPIGIKYISKMEHLIDLMISDNNIDSMG 186
Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
A ++ K L SLE+ + G K++ ++ LT L +S+N + DK ++ +SG+ L
Sbjct: 187 AKHISQMK-LTSLEVYNNTIDVEGAKYLSEMEQLTNLEISKN-EIGDKGVQFLSGMKQLT 244
Query: 449 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 497
SL+++ ++I+ G +++ +KNL L++ +++ + I+RL R++ L
Sbjct: 245 SLDINENKISDVGAKYILEMKNLIDLSVFDNEISEDIIERL--REMKQL 291
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/331 (25%), Positives = 155/331 (46%), Gaps = 43/331 (12%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG------LMKLE 158
+ LT+L+ R N+ I +G K + L+N+ LD I G +N +G + +L
Sbjct: 1 MKQLTNLNVRHND-IDEEGAKYISELMNVSTLD------ISGNSINKRGAKYIGEMKQLT 53
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
L + +C I K +S L L L I+ + + D G Y+ +++LT L++ C
Sbjct: 54 DLGM-YCCSIGVEGTKYISSLNQLTHLSININNIGDEGAKYIGQIKQLTDLSI--CD--- 107
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
+ +GS +G + ++ +L L + NEI D + + L
Sbjct: 108 ------NKIGS-------------EGVKYIGQLKNLLKLYVSCNEIGDNGAQFISEMNQL 148
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS--GLTNLESINLSFTGI 336
L++ S I G+ ++ + +L L +SD + S G +H+S LT+LE N I
Sbjct: 149 TKLDISSVNITPIGIKYISKMEHLIDLMISDNNIDSMGAKHISQMKLTSLEVYN---NTI 205
Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
+ L+ + L +L + +I D G+ L+ + LT LD+ +I+D GA Y+ K
Sbjct: 206 DVEGAKYLSEMEQLTNLEISKNEIGDKGVQFLSGMKQLTSLDINENKISDVGAKYILEMK 265
Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
NL L + +++ ++ ++++ LT L++
Sbjct: 266 NLIDLSVFDNEISEDIIERLREMKQLTYLDI 296
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 135/297 (45%), Gaps = 32/297 (10%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
++D+SG+ + G ++ + L L +C I G +++ L+ LT LS NN I
Sbjct: 30 TLDISGNSINKRGAKYIGEMKQLTDLGM-YCCSIGVEGTKYISSLNQLTHLSININN-IG 87
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+G K + L DL C N I +K + L
Sbjct: 88 DEGAKYIGQIKQLT--DLSICD-----------------------NKIGSEGVKYIGQLK 122
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL L +SC+++ D+G ++ + +LT L++ +T + +S + L L ++ +
Sbjct: 123 NLLKLYVSCNEIGDNGAQFISEMNQLTKLDISSVNITPIGIKYISKMEHLIDLMISDNNI 182
Query: 241 SDDGCEKFS--KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
G + S K+ SL+V N N I E +L + L +L + IGD+G+ L+G
Sbjct: 183 DSMGAKHISQMKLTSLEVYN---NTIDVEGAKYLSEMEQLTNLEISKNEIGDKGVQFLSG 239
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
+ L L++++ ++ G +++ + NL +++ IS+ + +L + L L++
Sbjct: 240 MKQLTSLDINENKISDVGAKYILEMKNLIDLSVFDNEISEDIIERLREMKQLTYLDI 296
>gi|301617436|ref|XP_002938142.1| PREDICTED: f-box/LRR-repeat protein 14-like [Xenopus (Silurana)
tropicalis]
Length = 400
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 109/316 (34%), Positives = 172/316 (54%), Gaps = 28/316 (8%)
Query: 200 LKGLQKLTLLNLEGCP-VTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSK-IGSL 254
++GL + LNL GC +T L + +GSL LNL+ C Q++D + ++ + L
Sbjct: 86 IQGLPDIESLNLSGCYNLTDNGLGHAFVQEIGSLRSLNLSLCKQVTDSSLGRIAQYLKGL 145
Query: 255 KVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN--------LK 303
+VL LG IT+ L+ + GL L+SLNL SC + D G+ +L G+ L+
Sbjct: 146 QVLELGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 304 CLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQ 359
L L D Q + L+H+S GL L +NLSF G ISD L L+ + L+SLNL +
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLQGLRVLNLSFCGGISDAGLLHLSHMGGLRSLNLRSCDN 265
Query: 360 ITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-K 414
I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D G+ +
Sbjct: 266 ISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLYGLKSLSLCSCHISDDGINR 324
Query: 415 HIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLR 472
++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L L+
Sbjct: 325 MVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKKGLERITQLPCLK 384
Query: 473 SLTLESCKVTANDIKR 488
L L ++T ++ R
Sbjct: 385 VLNLGLWQMTESEKVR 400
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 154/306 (50%), Gaps = 32/306 (10%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 203
++GL +ESLN+ C +TD+ + + + +L+SL +S C +VTDS + YLKGL
Sbjct: 86 IQGLPDIESLNLSGCYNLTDNGLGHAFVQEIGSLRSLNLSLCKQVTDSSLGRIAQYLKGL 145
Query: 204 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQLSDD-------GCEKFSKIGSL 254
Q +L L GC L L L LNL C+ D G + + G L
Sbjct: 146 Q---VLELGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCL 202
Query: 255 KVLNLGFNE---ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-S 308
+ L + +TD L H+ +GL L LNL C GI D GL++L+ + L+ L L S
Sbjct: 203 GLEQLTLQDCQKLTDLSLKHISRGLQGLRVLNLSFCGGISDAGLLHLSHMGGLRSLNLRS 262
Query: 309 DTQVGSSGLRHLS-GLTNLESINLSFT-GISDGSLRKLA-GLSSLKSLNLDARQITDTGL 365
+ +G+ HL+ G L +++SF + D SL +A GL LKSL+L + I+D G+
Sbjct: 263 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLYGLKSLSLCSCHISDDGI 322
Query: 366 AALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSS 421
+ + GL L++ RITD G + + L +++ G +T G++ I L
Sbjct: 323 NRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKKGLERITQLPC 382
Query: 422 LTLLNL 427
L +LNL
Sbjct: 383 LKVLNL 388
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 140/290 (48%), Gaps = 41/290 (14%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
V D + IA L ++L G +++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 130 VTDSSLGRIAQYLKGLQVLELGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVSDVGIGH 189
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL------KGLM 155
L G++ A G + L +L L+ C + L +L +GL
Sbjct: 190 LAGMTR-----------------SAAEGCLGLEQLTLQDCQK----LTDLSLKHISRGLQ 228
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEG 213
L LN+ +C I+D+ + LS + L+SL + SC ++D+GI +L G +L+ L++
Sbjct: 229 GLRVLNLSFCGGISDAGLLHLSHMGGLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSF 288
Query: 214 CPVTAACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDE 267
C SL+ + Y L+L C +SDDG + + + L+ LN+G ITD+
Sbjct: 289 CDKVGD--QSLAYIAQGLYGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDK 346
Query: 268 CLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSS 315
L + + L+ L ++L C I +GL +T L LK L L Q+ S
Sbjct: 347 GLELIAEHLSQLTGIDLYGCTRITKKGLERITQLPCLKVLNLGLWQMTES 396
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 125/246 (50%), Gaps = 34/246 (13%)
Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 322
++GL ++ESLNL C G+G + + L +L C +++D+ +G ++L G
Sbjct: 86 IQGLPDIESLNLSGCYNLTDNGLGHAFVQEIGSLRSLNLSLCKQVTDSSLGRIA-QYLKG 144
Query: 323 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 372
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 145 LQVLELGGCTNITNTGL----LLIAWGLHGLKSLNLRSCRHVSDVGIGHLAGMTRSAAEG 200
Query: 373 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 426
GL L L ++TD ++ R + LR +L CGG ++DAG+ H+ + L LN
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLQGLRVLNLSFCGG-ISDAGLLHLSHMGGLRSLN 259
Query: 427 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 483
L N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++
Sbjct: 260 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLYGLKSLSLCSCHISD 319
Query: 484 NDIKRL 489
+ I R+
Sbjct: 320 DGINRM 325
>gi|430746592|ref|YP_007205721.1| WD40 repeat-containing protein [Singulisphaera acidiphila DSM
18658]
gi|430018312|gb|AGA30026.1| WD40 repeat-containing protein [Singulisphaera acidiphila DSM
18658]
Length = 830
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 111/202 (54%), Gaps = 15/202 (7%)
Query: 279 ESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTGI 336
+ L +DS GI D GL +L L NL+ L + T ++ GL HL+ L L +NLS +G+
Sbjct: 623 KDLRIDSEEGIDDAGLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNLS-SGL 681
Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
SD ++ +LA L LK L+LD + D+G+AAL +T LT L L ++TD+G + L+
Sbjct: 682 SDKAVARLAPLKELKRLSLDHTDLRDSGMAALKGMTTLTELSLDETKVTDAGLSALKGMV 741
Query: 397 NLRSL-----EICGGGLTDAGVKHIKDLSSLTLLNLSQ--NCNLTDKTLELISGLTGLVS 449
+ L + G GL A +K + L SL+ + ++Q LTD L + L L
Sbjct: 742 QMERLSLGNVSVRGPGL--ANLKGMSRLKSLSFVAVAQYKPSPLTDAGLVHLENLPALDF 799
Query: 450 LNVSNSRITSAGL---RHLKPL 468
LN+ + +T AG+ R +KPL
Sbjct: 800 LNLGETSVTDAGMAAARKIKPL 821
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 102/232 (43%), Gaps = 44/232 (18%)
Query: 168 ITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
I D+ ++ L+ L NL+ L I +++ G+A+L L KLT LNL
Sbjct: 633 IDDAGLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNLS-------------- 678
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
LSD + + + LK L+L ++ D + LKG+T L L+LD
Sbjct: 679 -----------SGLSDKAVARLAPLKELKRLSLDHTDLRDSGMAALKGMTTLTELSLDET 727
Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
+ D GL L G+ ++ L L + V GL +L G++ L+S LSF ++
Sbjct: 728 KVTDAGLSALKGMVQMERLSLGNVSVRGPGLANLKGMSRLKS--LSFVAVA--------- 776
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
+TD GL L +L L L+L +TD+G A R K L
Sbjct: 777 -------QYKPSPLTDAGLVHLENLPALDFLNLGETSVTDAGMAAARKIKPL 821
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 90/186 (48%), Gaps = 9/186 (4%)
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMK 174
I G++ A L+NL L + + RI G GL +L L KL LN+ + ++D +
Sbjct: 630 EEGIDDAGLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNL--SSGLSDKAVA 687
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L+ L LK L + + + DSG+A LKG+ LT L+L+ VT A L +L + + L+
Sbjct: 688 RLAPLKELKRLSLDHTDLRDSGMAALKGMTTLTELSLDETKVTDAGLSALKGMVQMERLS 747
Query: 235 LNRCQLSDDGCEKFSKIGSLK------VLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
L + G + LK V + +TD LVHL+ L L+ LNL +
Sbjct: 748 LGNVSVRGPGLANLKGMSRLKSLSFVAVAQYKPSPLTDAGLVHLENLPALDFLNLGETSV 807
Query: 289 GDEGLV 294
D G+
Sbjct: 808 TDAGMA 813
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 91/192 (47%), Gaps = 9/192 (4%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+ D+GL HL NL+ L + +I GL HL L LT L+ ++ ++ + + A
Sbjct: 633 IDDAGLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNL--SSGLSDKAVARLA 690
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L L +L L+ G+ LKG+ L L++ +TD+ + L G+ ++ L +
Sbjct: 691 PLKELKRLSLDHTDLRDSGMAALKGMTTLTELSLDETK-VTDAGLSALKGMVQMERLSLG 749
Query: 189 CSKVTDSGIAYLKGLQKLTLLNL------EGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
V G+A LKG+ +L L+ + P+T A L L L +L +LNL ++D
Sbjct: 750 NVSVRGPGLANLKGMSRLKSLSFVAVAQYKPSPLTDAGLVHLENLPALDFLNLGETSVTD 809
Query: 243 DGCEKFSKIGSL 254
G KI L
Sbjct: 810 AGMAAARKIKPL 821
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 91/192 (47%), Gaps = 8/192 (4%)
Query: 240 LSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ D G E +++ +L+ L++ I L HL L L LNL S G+ D+ + L
Sbjct: 633 IDDAGLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNL-SSGLSDKAVARLAP 691
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L LK L L T + SG+ L G+T L ++L T ++D L L G+ ++ L+L
Sbjct: 692 LKELKRLSLDHTDLRDSGMAALKGMTTLTELSLDETKVTDAGLSALKGMVQMERLSLGNV 751
Query: 359 QITDTGLAALTSLTGLTHLDLFG------ARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
+ GLA L ++ L L + +TD+G +L N L L + +TDAG
Sbjct: 752 SVRGPGLANLKGMSRLKSLSFVAVAQYKPSPLTDAGLVHLENLPALDFLNLGETSVTDAG 811
Query: 413 VKHIKDLSSLTL 424
+ + + L L
Sbjct: 812 MAAARKIKPLIL 823
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 7/147 (4%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
S ++D + L L+ L + + D G+ L+G++ LT LS +T G+ A
Sbjct: 679 SGLSDKAVARLAPLKELKRLSLDHT-DLRDSGMAALKGMTTLTELSLDETK-VTDAGLSA 736
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC-----NCITDSDMKPLSGLTN 181
G++ + +L L + GL NLKG+ +L+SL+ + +TD+ + L L
Sbjct: 737 LKGMVQMERLSLGNVSVRGPGLANLKGMSRLKSLSFVAVAQYKPSPLTDAGLVHLENLPA 796
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTL 208
L L + + VTD+G+A + ++ L L
Sbjct: 797 LDFLNLGETSVTDAGMAAARKIKPLIL 823
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 10/160 (6%)
Query: 351 KSLNLDARQ-ITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGL 408
K L +D+ + I D GL L L L L + ARI G A+L L L + G L
Sbjct: 623 KDLRIDSEEGIDDAGLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNLSSG-L 681
Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 468
+D V + L L L+L + +L D + + G+T L L++ +++T AGL LK +
Sbjct: 682 SDKAVARLAPLKELKRLSL-DHTDLRDSGMAALKGMTTLTELSLDETKVTDAGLSALKGM 740
Query: 469 KNLRSLTLESCKVTA------NDIKRLQSRDLPNLVSFRP 502
+ L+L + V + RL+S + ++P
Sbjct: 741 VQMERLSLGNVSVRGPGLANLKGMSRLKSLSFVAVAQYKP 780
>gi|302804592|ref|XP_002984048.1| hypothetical protein SELMODRAFT_445748 [Selaginella moellendorffii]
gi|300148400|gb|EFJ15060.1| hypothetical protein SELMODRAFT_445748 [Selaginella moellendorffii]
Length = 657
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 139/470 (29%), Positives = 219/470 (46%), Gaps = 57/470 (12%)
Query: 56 GSSLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
G+ L S++LS G GL+ C++L +D ++C + D + L +SNL +L
Sbjct: 99 GNRLASINLSRVGGFTSAGLGLLARSCCASLTDVDLSYCSNLKDSDVLALAQISNLQALR 158
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
++IT G+ A ++KL L +K C ITD
Sbjct: 159 LTGCHSITDIGLGCLAAGCKMLKL-----------------------LTLKGCLGITDIG 195
Query: 173 MKPLS-GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLS-ALGS 229
+ ++ L++L +S ++VTD G+A + L L +LNL C V L SL + S
Sbjct: 196 IALVAVNCKQLRTLDLSYTEVTDEGLASIATLHSLEVLNLVSCNNVDDGGLRSLKRSCRS 255
Query: 230 LFYLNLNRCQ-LSDDGCEKFSKIG-SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC 286
L L+++RC +SD G + SL+ L L + + ITD+ L + +L+S+ LD C
Sbjct: 256 LLKLDVSRCSNVSDAGLAALATSHLSLEQLTLSYCSIITDDLLATFQKFDHLQSIVLDGC 315
Query: 287 GIGDEGLVNLTGLC-NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFT-GISDGSLR 342
I GL + C LK L LS + V G+ ++ G T L +NL+ ++D SL
Sbjct: 316 EIARNGLPFIARGCKQLKELSLSKCRGVTDRGIAAVAQGCTALHKLNLTCCRELTDASLC 375
Query: 343 KLA----GLSSLKSLNLDARQITDTGLAAL-TSLTGLTHLDLFGARITDSGAAYLRNFKN 397
+++ GL SLK + IT+ GL L L LD ++D+G Y+
Sbjct: 376 RISKDCKGLESLKMESCSL--ITEDGLCGLGEGCPRLEELDFTECNMSDTGLKYISKCTA 433
Query: 398 LRSLEI--CGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELI-SGLTGLVSLNVS 453
LRSL++ C +TD GV HI +L L+ ++ + D + I SG L L++S
Sbjct: 434 LRSLKLGFC-STITDKGVAHIGARCCNLRELDFYRSKGIGDAGVAAIASGCPKLKLLDLS 492
Query: 454 N-SRITSAGLRHLKPLKNLRSLTLESC--------KVTANDIKRLQSRDL 494
S+IT L+ L L+ L+ + L C V A+ KRL D+
Sbjct: 493 YCSKITDCSLQSLSQLRELQRVELRGCVLVSSTGLAVMASGCKRLTEIDI 542
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 128/480 (26%), Positives = 220/480 (45%), Gaps = 75/480 (15%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G+ D + ++A L ++DLS ++VTD GL + +L+ L+ C + DGGL L
Sbjct: 190 GITDIGIALVAVNCKQLRTLDLSYTEVTDEGLASIATLHSLEVLNLVSCNNVDDGGLRSL 249
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLK-GLMKLESL 160
+ S R +L+KLD+ RC+ + GL L + LE L
Sbjct: 250 KR-------SCR-----------------SLLKLDVSRCSNVSDAGLAALATSHLSLEQL 285
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTA 218
+ +C+ ITD + +L+S+ + ++ +G+ ++ +G ++L L+L C VT
Sbjct: 286 TLSYCSIITDDLLATFQKFDHLQSIVLDGCEIARNGLPFIARGCKQLKELSLSKCRGVTD 345
Query: 219 ACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLT 276
+ +++ +L LNL C+ E+TD L + K
Sbjct: 346 RGIAAVAQGCTALHKLNLTCCR-----------------------ELTDASLCRISKDCK 382
Query: 277 NLESLNLDSCG-IGDEGLVNL-TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF- 333
LESL ++SC I ++GL L G L+ L+ ++ + +GL+++S T L S+ L F
Sbjct: 383 GLESLKMESCSLITEDGLCGLGEGCPRLEELDFTECNMSDTGLKYISKCTALRSLKLGFC 442
Query: 334 TGISDGSLRKL-AGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDL-FGARITDSGA 389
+ I+D + + A +L+ L+ ++ I D G+AA+ S L LDL + ++ITD
Sbjct: 443 STITDKGVAHIGARCCNLRELDFYRSKGIGDAGVAAIASGCPKLKLLDLSYCSKITDCSL 502
Query: 390 AYLRNFKNLRSLEICGGGLTDAG-----VKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 444
L + L+ +E+ G L + K L+ + + SQ N L
Sbjct: 503 QSLSQLRELQRVELRGCVLVSSTGLAVMASGCKRLTEIDIKRCSQIGNAGVSALSFFC-- 560
Query: 445 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES-------CKVTA-NDIKRLQSRDLPN 496
GL +N+S I++AGL L L L+S+ L C VT + K L++ LP+
Sbjct: 561 PGLRMMNISYCPISNAGLLSLPRLSCLQSVRLVHLKNVTVDCFVTVLQNCKSLKNVKLPS 620
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 28/162 (17%)
Query: 29 RDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF 88
R C L++L + G+ D + IAS C L+ LD
Sbjct: 456 RCCNLRELDFYRSKGIGDAGVAAIAS------------------------GCPKLKLLDL 491
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HG 146
++C +I+D L+ L L L + R +++ G+ A G L ++D++RC++I +
Sbjct: 492 SYCSKITDCSLQSLSQLRELQRVELRGCVLVSSTGLAVMASGCKRLTEIDIKRCSQIGNA 551
Query: 147 GLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
G+ L L +NI +C I+++ + L L+ L+S+++
Sbjct: 552 GVSALSFFCPGLRMMNISYCP-ISNAGLLSLPRLSCLQSVRL 592
>gi|427735495|ref|YP_007055039.1| Leucine Rich Repeat (LRR)-containing protein [Rivularia sp. PCC
7116]
gi|427370536|gb|AFY54492.1| Leucine Rich Repeat (LRR)-containing protein [Rivularia sp. PCC
7116]
Length = 396
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 169/334 (50%), Gaps = 53/334 (15%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
SD+KPLSGLTNL ++ + +K++D + L L LT LN+ G ++ + L++L +L
Sbjct: 84 SDLKPLSGLTNLTNIDLWGNKISD--VKPLVNLTNLTNLNIGGNKISD--VKPLASLTNL 139
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L+L ++SD + + +L L++ N+I+D + L+ L NL L + S I D
Sbjct: 140 TNLDLGGNKISD--VTPLASLTNLIRLDVYSNQISD--INSLENLNNLTFLRVGSNRIVD 195
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
+ NL L L + Q+ S +R LS L NL +NL ISD ++ +A L+SL
Sbjct: 196 --VKQFANFTNLTELWLEENQI--SDVRPLSSLNNLTKLNLMSNQISD--IKPIASLNSL 249
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
SL+LD QI+D + AL++LT LT L L +I + L N LR L + ++D
Sbjct: 250 NSLDLDKNQISD--IEALSNLTNLTTLGLDRNQIIN--IKPLSNLTKLRWLFLRQNQISD 305
Query: 411 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 470
IK LSSLT L + LEL S +R +KPL N
Sbjct: 306 -----IKPLSSLTNL----------RWLELKSN-----------------KIRDVKPLTN 333
Query: 471 LRSLTLESCKVTANDIKRLQS-RDLPNLVSFRPE 503
L L + +++N I +QS +L NLV+F E
Sbjct: 334 LAK--LRNLNLSSNQITNVQSLANLTNLVNFNVE 365
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 103/321 (32%), Positives = 162/321 (50%), Gaps = 32/321 (9%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
SSL + L ++D L L +NL ++D + +ISD ++ L L+NLT+L+ N
Sbjct: 71 SSLTELRLLTKQISD--LKPLSGLTNLTNIDL-WGNKISD--VKPLVNLTNLTNLNIGGN 125
Query: 117 NAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+K A L NL LDL + + + L +L L++L+ + N I SD+
Sbjct: 126 ---KISDVKPLASLTNLTNLDLGGNKISDV-TPLASLTNLIRLDV----YSNQI--SDIN 175
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L L NL L++ +++ D + LT L LE ++ + LS+L +L LN
Sbjct: 176 SLENLNNLTFLRVGSNRIVD--VKQFANFTNLTELWLEENQISD--VRPLSSLNNLTKLN 231
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
L Q+SD + + + SL L+L N+I+D + L LTNL +L LD I + +
Sbjct: 232 LMSNQISD--IKPIASLNSLNSLDLDKNQISD--IEALSNLTNLTTLGLDRNQIIN--IK 285
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
L+ L L+ L L Q+ S ++ LS LTNL + L I D ++ L L+ L++LN
Sbjct: 286 PLSNLTKLRWLFLRQNQI--SDIKPLSSLTNLRWLELKSNKIRD--VKPLTNLAKLRNLN 341
Query: 355 LDARQITDT-GLAALTSLTGL 374
L + QIT+ LA LT+L
Sbjct: 342 LSSNQITNVQSLANLTNLVNF 362
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 137/284 (48%), Gaps = 47/284 (16%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++DL G+ ++D + L +NL LD + QISD + L NL +L+F R
Sbjct: 137 TNLTNLDLGGNKISD--VTPLASLTNLIRLDV-YSNQISD-----INSLENLNNLTFLRV 188
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ +K FA NL +L LE N I SD++PL
Sbjct: 189 GSNRIVDVKQFANFTNLTELWLEE-------------------------NQI--SDVRPL 221
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
S L NL L + ++++D I + L L L+L+ ++ +++LS L +L L L+
Sbjct: 222 SSLNNLTKLNLMSNQISD--IKPIASLNSLNSLDLDKNQISD--IEALSNLTNLTTLGLD 277
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
R Q+ + + S + L+ L L N+I+D + L LTNL L L S I D + L
Sbjct: 278 RNQIIN--IKPLSNLTKLRWLFLRQNQISD--IKPLSSLTNLRWLELKSNKIRD--VKPL 331
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
T L L+ L LS Q+ + ++ L+ LTNL + N+ I+ S
Sbjct: 332 TNLAKLRNLNLSSNQI--TNVQSLANLTNLVNFNVEENPINTKS 373
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 15/170 (8%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QISD ++ + L++L SL +N ++A + L NL L L+R ++N+K
Sbjct: 236 QISD--IKPIASLNSLNSLDLDKN---QISDIEALSNLTNLTTLGLDR-----NQIINIK 285
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L L L + SD+KPLS LTNL+ L++ +K+ D + L L KL LNL
Sbjct: 286 PLSNLTKLRWLFLRQNQISDIKPLSSLTNLRWLELKSNKIRD--VKPLTNLAKLRNLNLS 343
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE-KFSKIGSLKVLNLGF 261
+T + SL+ L +L N+ ++ C + +K GS K+ + F
Sbjct: 344 SNQITN--VQSLANLTNLVNFNVEENPINTKSCPGRSTKCGSTKLKHRTF 391
>gi|320166209|gb|EFW43108.1| ephrin type-B receptor 3 [Capsaspora owczarzaki ATCC 30864]
Length = 1219
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 114/386 (29%), Positives = 163/386 (42%), Gaps = 38/386 (9%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
HL D ++L FN QI+ GL+ LT L NN IT FA L L +
Sbjct: 54 HLGD----RTLSFN---QITSISANAFAGLTALTDLQLNNNN-ITIIPDYTFANLPALTE 105
Query: 136 LDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
L L T I + GL L LN C IT + L+ L ++Q+S +++T
Sbjct: 106 LHLFFNPITSISAN--SFAGLTVLNLLNSYNCQ-ITSIAANAFTDLSKLTNMQMSGNQIT 162
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
G+ L +L L G +T+ + + L +L YL+L+ Q+S F + +
Sbjct: 163 SIAPNVFSGMSALKILYLNGNQITSISASAFTGLTALTYLSLDSNQISSIALNAFPGMSA 222
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
LK+L L N+IT G+ S G+ T L LK L L+D Q+
Sbjct: 223 LKILRLNINQIT--------GI---------SAGV-------FTDLSALKELWLNDNQIT 258
Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
S +GLT L + L I+ S L +L +L L +IT A T LT
Sbjct: 259 SISANAFTGLTALTFLRLYVNQITSISPGAFTDLGALTTLILSTNKITSISENAFTGLTA 318
Query: 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
LT L L +IT A + L +L + +T L++LT L L QN L
Sbjct: 319 LTFLQLDANQITSISAGAFTDLGALTTLILSINTITSISANAFTGLTALTALYLQQN-QL 377
Query: 434 TDKTLELISGLTGLVSLNVSNSRITS 459
+ +GLT L L + + ITS
Sbjct: 378 DSISAIAFTGLTALRELWLQVNLITS 403
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 134/312 (42%), Gaps = 1/312 (0%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N IT +GLT L LQ++ + +T L LT L+L P+T+ +S +
Sbjct: 63 NQITSISANAFAGLTALTDLQLNNNNITIIPDYTFANLPALTELHLFFNPITSISANSFA 122
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L L LN CQ++ F+ + L + + N+IT G++ L+ L L+
Sbjct: 123 GLTVLNLLNSYNCQITSIAANAFTDLSKLTNMQMSGNQITSIAPNVFSGMSALKILYLNG 182
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
I TGL L L L Q+ S L G++ L+ + L+ I+ S
Sbjct: 183 NQITSISASAFTGLTALTYLSLDSNQISSIALNAFPGMSALKILRLNINQITGISAGVFT 242
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
LS+LK L L+ QIT A T LT LT L L+ +IT + L +L +
Sbjct: 243 DLSALKELWLNDNQITSISANAFTGLTALTFLRLYVNQITSISPGAFTDLGALTTLILST 302
Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
+T L++LT L L N +T + + L L +L +S + ITS
Sbjct: 303 NKITSISENAFTGLTALTFLQLDAN-QITSISAGAFTDLGALTTLILSINTITSISANAF 361
Query: 466 KPLKNLRSLTLE 477
L L +L L+
Sbjct: 362 TGLTALTALYLQ 373
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 117/268 (43%), Gaps = 25/268 (9%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+T+ ++ + L +L L LN ++ F+ + +L L+L FN IT GL
Sbjct: 65 ITSISANAFAGLTALTDLQLNNNNITIIPDYTFANLPALTELHLFFNPITSISANSFAGL 124
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
T L LN +C I T + ++ LS LTN++ +S
Sbjct: 125 TVLNLLNSYNCQI---------------------TSIAANAFTDLSKLTNMQ---MSGNQ 160
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
I+ + +G+S+LK L L+ QIT +A T LT LT+L L +I+
Sbjct: 161 ITSIAPNVFSGMSALKILYLNGNQITSISASAFTGLTALTYLSLDSNQISSIALNAFPGM 220
Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 455
L+ L + +T DLS+L L L+ N +T + +GLT L L + +
Sbjct: 221 SALKILRLNINQITGISAGVFTDLSALKELWLNDN-QITSISANAFTGLTALTFLRLYVN 279
Query: 456 RITSAGLRHLKPLKNLRSLTLESCKVTA 483
+ITS L L +L L + K+T+
Sbjct: 280 QITSISPGAFTDLGALTTLILSTNKITS 307
>gi|406831323|ref|ZP_11090917.1| hypothetical protein SpalD1_06790 [Schlesneria paludicola DSM
18645]
Length = 539
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 129/266 (48%), Gaps = 22/266 (8%)
Query: 240 LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLD-----SCGIGDEGL 293
L+D KFS + +L+ + G + T E L HL LTNLE L+ + +GD L
Sbjct: 173 LNDKALAKFSVLSTLRGIQFEGAPQFTVEGLSHLSKLTNLERLSASFSSQSANELGDATL 232
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKS 352
+++ + +L+ L LS+ V GL+ L L NL +++ G ++D +L +A L LK
Sbjct: 233 RSISEIESLRELNLSECGVTDEGLKSLEKLPNLTHLSIYQEGRLTDAALSTIAKLKHLKV 292
Query: 353 LNLDAR--------QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
L L +++ L +LT L HLDL G ++ L NF L+SL I
Sbjct: 293 LTLTTHVGTPLGRMHFSESATNQLIALTELEHLDLSGHDVSTD----LLNFPRLKSLRIN 348
Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCN-LTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
D K I LT L++S C+ +TD LE + L L L++ I+ +
Sbjct: 349 RNQFDDDLAKAIAKCRELTHLDVS--CSEMTDTALEHLRPLPSLTQLHIRAEEISDNAIA 406
Query: 464 HLKPLKNLRSLTLESCKVTANDIKRL 489
HLK NL S+TL + ++T ++ L
Sbjct: 407 HLKLFPNLASVTLHTAELTDKSLEYL 432
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 159/346 (45%), Gaps = 19/346 (5%)
Query: 24 SLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNL 83
+++A ++ A Q L + + + + + +++S+ G + D L S L
Sbjct: 129 TMKAVKERAKQRLPKWIHEYFDSPKLRIFSDDDGNVVSLSDYGV-LNDKALAKFSVLSTL 187
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNL----TSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
+ + F Q + GL HL L+NL S S + N + +++ + + +L +L+L
Sbjct: 188 RGIQFEGAPQFTVEGLSHLSKLTNLERLSASFSSQSANELGDATLRSISEIESLRELNLS 247
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS--------K 191
C GL +L+ L L L+I +TD+ + ++ L +LK L ++
Sbjct: 248 ECGVTDEGLKSLEKLPNLTHLSIYQEGRLTDAALSTIAKLKHLKVLTLTTHVGTPLGRMH 307
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
++S L L +L L+L G V+ L+ L L +NR Q DD + +K
Sbjct: 308 FSESATNQLIALTELEHLDLSGHDVSTDLLN----FPRLKSLRINRNQFDDDLAKAIAKC 363
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
L L++ +E+TD L HL+ L +L L++ + I D + +L NL + L +
Sbjct: 364 RELTHLDVSCSEMTDTALEHLRPLPSLTQLHIRAEEISDNAIAHLKLFPNLASVTLHTAE 423
Query: 312 VGSSGLRHLSGLTNLESINLSFT--GISDGSLRKLAGLSSLKSLNL 355
+ L +LS +L ++L++ S L +LA L +L++L L
Sbjct: 424 LTDKSLEYLSQTASLTKLDLNWATNHFSRHGLEQLANLPNLETLEL 469
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 118/250 (47%), Gaps = 36/250 (14%)
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHLSGLTNLESINLSFTGIS----- 337
D + D+ L + L L+ ++ Q GL HLS LTNLE ++ SF+ S
Sbjct: 169 DYGVLNDKALAKFSVLSTLRGIQFEGAPQFTVEGLSHLSKLTNLERLSASFSSQSANELG 228
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFK 396
D +LR ++ + SL+ LNL +TD GL +L L LTHL ++ R+TD+ + + K
Sbjct: 229 DATLRSISEIESLRELNLSECGVTDEGLKSLEKLPNLTHLSIYQEGRLTDAALSTIAKLK 288
Query: 397 NLRSLEICGGGLTDAGVKHIKD--------LSSLTLLNLSQNCNLTD-------KTLEL- 440
+L+ L + T G H + L+ L L+LS + TD K+L +
Sbjct: 289 HLKVLTLTTHVGTPLGRMHFSESATNQLIALTELEHLDLSGHDVSTDLLNFPRLKSLRIN 348
Query: 441 -----------ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
I+ L L+VS S +T L HL+PL +L L + + +++ N I L
Sbjct: 349 RNQFDDDLAKAIAKCRELTHLDVSCSEMTDTALEHLRPLPSLTQLHIRAEEISDNAIAHL 408
Query: 490 QSRDLPNLVS 499
+ PNL S
Sbjct: 409 KL--FPNLAS 416
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 146/327 (44%), Gaps = 44/327 (13%)
Query: 192 VTDSGIAYLKGLQKLTLL------NLEGCP-VTAACLDSLSALGSLFYLNLNRC-----Q 239
++D G+ K L K ++L EG P T L LS L +L L+ + +
Sbjct: 167 LSDYGVLNDKALAKFSVLSTLRGIQFEGAPQFTVEGLSHLSKLTNLERLSASFSSQSANE 226
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTG 298
L D S+I SL+ LNL +TDE L L+ L NL L++ G + D L +
Sbjct: 227 LGDATLRSISEIESLRELNLSECGVTDEGLKSLEKLPNLTHLSIYQEGRLTDAALSTIAK 286
Query: 299 LCNLKCLELSDTQVGSS-GLRHLS--------GLTNLESINLSFTGIS------------ 337
L +LK L L+ T VG+ G H S LT LE ++LS +S
Sbjct: 287 LKHLKVLTLT-THVGTPLGRMHFSESATNQLIALTELEHLDLSGHDVSTDLLNFPRLKSL 345
Query: 338 --------DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
D + +A L L++ ++TDT L L L LT L + I+D+
Sbjct: 346 RINRNQFDDDLAKAIAKCRELTHLDVSCSEMTDTALEHLRPLPSLTQLHIRAEEISDNAI 405
Query: 390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN-LTDKTLELISGLTGLV 448
A+L+ F NL S+ + LTD ++++ +SLT L+L+ N + LE ++ L L
Sbjct: 406 AHLKLFPNLASVTLHTAELTDKSLEYLSQTASLTKLDLNWATNHFSRHGLEQLANLPNLE 465
Query: 449 SLNVSNSRITSAGLRHLKPLKNLRSLT 475
+L + GL+ ++ K LT
Sbjct: 466 TLELRIIPFQGGGLKLIRDAKEPEILT 492
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 120/264 (45%), Gaps = 16/264 (6%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
S +++ D+ L + + +L+ L+ + C ++D GL+ L L NLT LS + +T +
Sbjct: 223 SANELGDATLRSISEIESLRELNLSEC-GVTDEGLKSLEKLPNLTHLSIYQEGRLTDAAL 281
Query: 125 KAFAGLINLVKLDLERCT-----RIH---GGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A L +L L L R+H L L +LE L++ + TD L
Sbjct: 282 STIAKLKHLKVLTLTTHVGTPLGRMHFSESATNQLIALTELEHLDLSGHDVSTD-----L 336
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
LKSL+I+ ++ D + ++LT L++ +T L+ L L SL L++
Sbjct: 337 LNFPRLKSLRINRNQFDDDLAKAIAKCRELTHLDVSCSEMTDTALEHLRPLPSLTQLHIR 396
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD--SCGIGDEGLV 294
++SD+ +L + L E+TD+ L +L +L L+L+ + GL
Sbjct: 397 AEEISDNAIAHLKLFPNLASVTLHTAELTDKSLEYLSQTASLTKLDLNWATNHFSRHGLE 456
Query: 295 NLTGLCNLKCLELSDTQVGSSGLR 318
L L NL+ LEL GL+
Sbjct: 457 QLANLPNLETLELRIIPFQGGGLK 480
>gi|290976088|ref|XP_002670773.1| predicted protein [Naegleria gruberi]
gi|284084335|gb|EFC38029.1| predicted protein [Naegleria gruberi]
Length = 681
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 132/274 (48%), Gaps = 25/274 (9%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L L++ +C I+D ++ +S + LK L +S ++ + + +K +++LT+L++ +
Sbjct: 415 LRRLHVVFCK-ISDREISVISQMKQLKELNVSGNRFSFESVCKIKDMKQLTILDMSYTKL 473
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
++ +S + +L L +N L G E +++ L+ L +G N I DE + + +
Sbjct: 474 KCLDVEVVSGMRNLTSLRINDNDLGIQGAELIAQLDQLRELFIGSNNIGDEGMYSISHMK 533
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
NL L++ S GIG+E G++ + L GLT IN+ F I
Sbjct: 534 NLTKLDVSSNGIGEE---------------------GANSISQLKGLT---FINVGFNLI 569
Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
+ L L +L ++ +I TG ++ + +T LD+ I D GA Y+ +
Sbjct: 570 GQQGAESIGELEQLTTLLINNCEIGPTGAKFISKMQRVTELDISLNDIQDEGAHYISELE 629
Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
L L + +TD G+K I + +L LL++S N
Sbjct: 630 KLSILYVNNNEITDEGLKAITQMKNLQLLDVSGN 663
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 127/260 (48%), Gaps = 1/260 (0%)
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
S++ L L++ C++SD S++ LK LN+ N + E + +K + L L+
Sbjct: 408 SIARCEHLRRLHVVFCKISDREISVISQMKQLKELNVSGNRFSFESVCKIKDMKQLTILD 467
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
+ + + ++G+ NL L ++D +G G ++ L L + + I D +
Sbjct: 468 MSYTKLKCLDVEVVSGMRNLTSLRINDNDLGIQGAELIAQLDQLRELFIGSNNIGDEGMY 527
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
++ + +L L++ + I + G +++ L GLT +++ I GA + + L +L
Sbjct: 528 SISHMKNLTKLDVSSNGIGEEGANSISQLKGLTFINVGFNLIGQQGAESIGELEQLTTLL 587
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
I + G K I + +T L++S N ++ D+ IS L L L V+N+ IT GL
Sbjct: 588 INNCEIGPTGAKFISKMQRVTELDISLN-DIQDEGAHYISELEKLSILYVNNNEITDEGL 646
Query: 463 RHLKPLKNLRSLTLESCKVT 482
+ + +KNL+ L + K++
Sbjct: 647 KAITQMKNLQLLDVSGNKIS 666
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 131/276 (47%), Gaps = 4/276 (1%)
Query: 186 QISCSKVTDSGIAYLKGL---QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
Q V DS K + + L L++ C ++ + +S + L LN++ + S
Sbjct: 392 QTKSFSVVDSAFDRSKSIARCEHLRRLHVVFCKISDREISVISQMKQLKELNVSGNRFSF 451
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
+ K + L +L++ + ++ + + G+ NL SL ++ +G +G + L L
Sbjct: 452 ESVCKIKDMKQLTILDMSYTKLKCLDVEVVSGMRNLTSLRINDNDLGIQGAELIAQLDQL 511
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
+ L + +G G+ +S + NL +++S GI + ++ L L +N+ I
Sbjct: 512 RELFIGSNNIGDEGMYSISHMKNLTKLDVSSNGIGEEGANSISQLKGLTFINVGFNLIGQ 571
Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
G ++ L LT L + I +GA ++ + + L+I + D G +I +L L
Sbjct: 572 QGAESIGELEQLTTLLINNCEIGPTGAKFISKMQRVTELDISLNDIQDEGAHYISELEKL 631
Query: 423 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
++L ++ N +TD+ L+ I+ + L L+VS ++I+
Sbjct: 632 SILYVNNN-EITDEGLKAITQMKNLQLLDVSGNKIS 666
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 118/252 (46%), Gaps = 12/252 (4%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNF----CIQISDGGL 99
++D+ + VI SQ L +++SG+ + + +KD L LD ++ C+ +
Sbjct: 425 ISDREISVI-SQMKQLKELNVSGNRFSFESVCKIKDMKQLTILDMSYTKLKCLDV----- 478
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
E + G+ NLTSL +N + QG + A L L +L + G+ ++ + L
Sbjct: 479 EVVSGMRNLTSLRIN-DNDLGIQGAELIAQLDQLRELFIGSNNIGDEGMYSISHMKNLTK 537
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L++ N I + +S L L + + + + G + L++LT L + C +
Sbjct: 538 LDVS-SNGIGEEGANSISQLKGLTFINVGFNLIGQQGAESIGELEQLTTLLINNCEIGPT 596
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+S + + L+++ + D+G S++ L +L + NEITDE L + + NL+
Sbjct: 597 GAKFISKMQRVTELDISLNDIQDEGAHYISELEKLSILYVNNNEITDEGLKAITQMKNLQ 656
Query: 280 SLNLDSCGIGDE 291
L++ I DE
Sbjct: 657 LLDVSGNKISDE 668
>gi|290979547|ref|XP_002672495.1| predicted protein [Naegleria gruberi]
gi|284086072|gb|EFC39751.1| predicted protein [Naegleria gruberi]
Length = 665
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 128/264 (48%), Gaps = 18/264 (6%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
IT ++ ++ L + + I+ ++ D G + + +++LT L++ T + + ++
Sbjct: 398 ITHEVLQNITKLEKVNYVDIAAIRIGDEGASMIGQMKQLTYLDI---SFTGISYNGMRSI 454
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
G L NL + S D E +S + V +HL+ L L L++
Sbjct: 455 GQL--TNLTQLIFSSDDYENYSAPKGVTVA------------IHLRNLKKLTHLDITYNE 500
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
IGDEG ++ L NL LE+ + Q+ + G + +S L NL +N+S + S++ L L
Sbjct: 501 IGDEGSQFISELLNLTYLEMPNNQLRNEGFKMISKLENLTHLNISNNDFNCESMKHLCEL 560
Query: 348 SSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
+L SL IT + + + L LT LDL I + GA Y+ K L+SL++
Sbjct: 561 KNLTSLEAFNTGITSNDVKLIANHLKYLTELDLSCNDIGNEGAKYVSELKQLQSLQLAQT 620
Query: 407 GLTDAGVKHIKDLSSLTLLNLSQN 430
L GVK++ L LT L++S+N
Sbjct: 621 NLDSEGVKYLVRLDQLTDLDVSEN 644
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 114/235 (48%), Gaps = 9/235 (3%)
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
+IT E L ++ L + +++ + IGDEG + + L L++S T + +G+R +
Sbjct: 397 KITHEVLQNITKLEKVNYVDIAAIRIGDEGASMIGQMKQLTYLDISFTGISYNGMRSIGQ 456
Query: 323 LTNLESINLSFTGISDGSLRK-------LAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
LTNL + S + S K L L L L++ +I D G ++ L LT
Sbjct: 457 LTNLTQLIFSSDDYENYSAPKGVTVAIHLRNLKKLTHLDITYNEIGDEGSQFISELLNLT 516
Query: 376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
+L++ ++ + G + +NL L I +KH+ +L +LT L + N +T
Sbjct: 517 YLEMPNNQLRNEGFKMISKLENLTHLNISNNDFNCESMKHLCELKNLTSLE-AFNTGITS 575
Query: 436 KTLELISG-LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
++LI+ L L L++S + I + G +++ LK L+SL L + + +K L
Sbjct: 576 NDVKLIANHLKYLTELDLSCNDIGNEGAKYVSELKQLQSLQLAQTNLDSEGVKYL 630
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 28/181 (15%)
Query: 75 IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
IHL++ L LD + +I D G + + L NLT L NN + +G K + L NL
Sbjct: 483 IHLRNLKKLTHLDITYN-EIGDEGSQFISELLNLTYLEMP-NNQLRNEGFKMISKLENLT 540
Query: 135 KLDLER----CTRIHGGLVNLKGLMKLESLN--------------IKW-------CNCIT 169
L++ C + L LK L LE+ N +K+ CN I
Sbjct: 541 HLNISNNDFNCESM-KHLCELKNLTSLEAFNTGITSNDVKLIANHLKYLTELDLSCNDIG 599
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
+ K +S L L+SLQ++ + + G+ YL L +LT L++ + A L+ +
Sbjct: 600 NEGAKYVSELKQLQSLQLAQTNLDSEGVKYLVRLDQLTDLDVSENSIDAERCKYLNEMKQ 659
Query: 230 L 230
L
Sbjct: 660 L 660
>gi|410907724|ref|XP_003967341.1| PREDICTED: F-box/LRR-repeat protein 14-like [Takifugu rubripes]
Length = 403
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 110/329 (33%), Positives = 165/329 (50%), Gaps = 36/329 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFA-----GLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ + QGM G NL L G ++ + L
Sbjct: 71 RGIKKVQILSLRRSLSYVIQGMPHIESLNLCGCFNLTDSGL--------GHAFVQDIPSL 122
Query: 158 ESLNIKWCNCITDSDM-KPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + K L NL+ L++ CS +T++G+ + GL +L LNL C
Sbjct: 123 RVLNLSLCKQITDSSLGKIAEYLKNLEVLELGGCSNITNTGLLLVAWGLHRLKSLNLRSC 182
Query: 215 -PVTAACLDSLSALG--------SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
V+ + LS + SL L L CQ L+D + SK + LKVLNL F
Sbjct: 183 RHVSDVGIGHLSGMTRSAAEGCLSLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCG 242
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
I+D ++HL +T+L SLNL SC I D G+++L G L L++S ++G L +
Sbjct: 243 GISDVGMIHLSHMTHLCSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKIGDQSLAY 302
Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLT 375
++ GL L+S++L ISD + R + + LK+LN+ +ITD GL + LT LT
Sbjct: 303 IAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCGRITDKGLELIADHLTQLT 362
Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEI 403
+DL+G +IT G + L+ L +
Sbjct: 363 GIDLYGCTKITKRGLERITQLPCLKVLNL 391
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 109/339 (32%), Positives = 181/339 (53%), Gaps = 50/339 (14%)
Query: 176 LSGLTNLKSLQI-SCSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ G+ +++SL + C +TDSG+ A+++ + L +LNL C
Sbjct: 89 IQGMPHIESLNLCGCFNLTDSGLGHAFVQDIPSLRVLNLSLCK----------------- 131
Query: 233 LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GI 288
Q++D K ++ + +L+VL LG + IT+ L+ + GL L+SLNL SC +
Sbjct: 132 ------QITDSSLGKIAEYLKNLEVLELGGCSNITNTGLLLVAWGLHRLKSLNLRSCRHV 185
Query: 289 GDEGLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-IS 337
D G+ +L+G+ +L+ L L D Q + L+H+S GL L+ +NLSF G IS
Sbjct: 186 SDVGIGHLSGMTRSAAEGCLSLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCGGIS 245
Query: 338 DGSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL- 392
D + L+ ++ L SLNL + I+DTG+ A+ SL L+ LD+ F +I D AY+
Sbjct: 246 DVGMIHLSHMTHLCSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKIGDQSLAYIA 304
Query: 393 RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSL 450
+ L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ LT L +
Sbjct: 305 QGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCGRITDKGLELIADHLTQLTGI 364
Query: 451 NVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
++ ++IT GL + L L+ L L ++T N+ R
Sbjct: 365 DLYGCTKITKRGLERITQLPCLKVLNLGLWQMTENERMR 403
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 97/306 (31%), Positives = 163/306 (53%), Gaps = 26/306 (8%)
Query: 82 NLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDL 138
+++SL+ C ++D GL H ++ + +L L+ IT + A + NL L+L
Sbjct: 94 HIESLNLCGCFNLTDSGLGHAFVQDIPSLRVLNLSLCKQITDSSLGKIAEYLKNLEVLEL 153
Query: 139 ERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLKSLQIS 188
C+ I G L+ GL +L+SLN++ C ++D + LSG+T +L+ L +
Sbjct: 154 GGCSNITNTGLLLVAWGLHRLKSLNLRSCRHVSDVGIGHLSGMTRSAAEGCLSLEKLTLQ 213
Query: 189 -CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
C K+TD + ++ KGL KL +LNL C ++ + LS + L LNL C +SD G
Sbjct: 214 DCQKLTDLSLKHVSKGLNKLKVLNLSFCGGISDVGMIHLSHMTHLCSLNLRSCDNISDTG 273
Query: 245 CEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT-GL 299
+ +GSL++ L++ F ++I D+ L ++ +GL L+SL+L SC I D+G+ + +
Sbjct: 274 IMHLA-MGSLRLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQM 332
Query: 300 CNLKCLELSDT-QVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLD 356
LK L + ++ GL ++ LT L I+L T I+ L ++ L LK LNL
Sbjct: 333 HELKTLNIGQCGRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLG 392
Query: 357 ARQITD 362
Q+T+
Sbjct: 393 LWQMTE 398
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 104/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ K + L+ L+ +FC ISD G+ HL +++L SL+ R + I+ G+
Sbjct: 218 LTDLSLKHVSKGLNKLKVLNLSFCGGISDVGMIHLSHMTHLCSLNLRSCDNISDTGIMHL 277
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C +I + +GL +L+SL++ C+ D + + + LK+
Sbjct: 278 AMGSLRLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKT 337
Query: 185 LQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + L +LT ++L GC +++
Sbjct: 338 LNIGQCGRITDKGLELIADHLTQLTGIDLYGCT-----------------------KITK 374
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++T+
Sbjct: 375 RGLERITQLPCLKVLNLGLWQMTE 398
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 126/255 (49%), Gaps = 34/255 (13%)
Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 322
++G+ ++ESLNL C G+G + ++ L L C +++D+ +G
Sbjct: 89 IQGMPHIESLNLCGCFNLTDSGLGHAFVQDIPSLRVLNLSLCKQITDSSLGKIA----EY 144
Query: 323 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 372
L NLE + L + I++ L +A GL LKSLNL + R ++D G+ L+ +T
Sbjct: 145 LKNLEVLELGGCSNITNTGLLLVAWGLHRLKSLNLRSCRHVSDVGIGHLSGMTRSAAEGC 204
Query: 373 -GLTHLDLFG-ARITDSGAAYLR---NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
L L L ++TD ++ N + +L CGG ++D G+ H+ ++ L LNL
Sbjct: 205 LSLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCGG-ISDVGMIHLSHMTHLCSLNL 263
Query: 428 SQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 484
N++D + L G L L+VS +I L ++ + L L+SL+L SC ++ +
Sbjct: 264 RSCDNISDTGIMHLAMGSLRLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDD 323
Query: 485 DIKRL--QSRDLPNL 497
I R+ Q +L L
Sbjct: 324 GINRMVRQMHELKTL 338
>gi|440802686|gb|ELR23615.1| leucine rich repeat domain containing protein, partial
[Acanthamoeba castellanii str. Neff]
Length = 431
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 123/404 (30%), Positives = 184/404 (45%), Gaps = 26/404 (6%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP ++ ++I L + LT +LE F+ ++ L L V D W+DV+ SSL
Sbjct: 29 LPIEVIERILLYLHRTERLTLEALEFFKAFPVETLFLSNIRAVEDTWLDVLKGY-SSLTY 87
Query: 62 VDLSGS-DVTDSGLIH-LKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNA 118
+DLS S +TD+GL LK L+SL + C +I+D GL L NL +
Sbjct: 88 LDLSNSYRITDTGLAECLKCMPQLRSLFVDRCKRITDAGLAPLGTHCPNLRRVHVG-GTM 146
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + A L +L + + TR L L+K + W + D +
Sbjct: 147 ITYYALAALNSLEDLQDVSVN-GTRFPDK--ALYTLLKRKEAPDSWA----EEDYGEVRQ 199
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGL-QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN- 236
LT+ Q S + V D G+ LKGL L LNL P A L +L SL +L+++
Sbjct: 200 LTDF---QASRTLVRDDGVRLLKGLGASLHTLNLAFNPGIADW-SFLGSLASLTHLDISL 255
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL-VN 295
+D K+ SL +LNL E+TDE + L L+ L SL++ I L
Sbjct: 256 NVGFTDQFAADVGKLSSLTLLNLSKTELTDEGIPALMELSQLRSLDVGKTAITHRALGPG 315
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG-LSSLKSLN 354
L L NL L L T VG R+L+ L L S + G L G L +L+
Sbjct: 316 LAKLPNLTALSLPYTNVGGKFSRYLTVLHRLTSFK------TTGLLELAKGRYPHLTALD 369
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
+ Q+TD+GLA + L L + +++ ++T+ GA ++ L
Sbjct: 370 VGCDQLTDSGLAHIGELAALRNFNMWNTKVTNQGAELVQQLTGL 413
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 105/356 (29%), Positives = 163/356 (45%), Gaps = 34/356 (9%)
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVN-LKGLMKLESLNIKWCNCITDSDMK 174
A+ + G +L LDL RI GL LK + +L SL + C ITD+ +
Sbjct: 69 RAVEDTWLDVLKGYSSLTYLDLSNSYRITDTGLAECLKCMPQLRSLFVDRCKRITDAGLA 128
Query: 175 PL-SGLTNLKSLQISCSKVTDSGIAYLKGLQKL----------------TLLNLEGCPVT 217
PL + NL+ + + + +T +A L L+ L TLL + P +
Sbjct: 129 PLGTHCPNLRRVHVGGTMITYYALAALNSLEDLQDVSVNGTRFPDKALYTLLKRKEAPDS 188
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG-SLKVLNLGFNE-ITDECLV-HLKG 274
A D + L +R + DDG +G SL LNL FN I D + L
Sbjct: 189 WAEED-YGEVRQLTDFQASRTLVRDDGVRLLKGLGASLHTLNLAFNPGIADWSFLGSLAS 247
Query: 275 LTNLE-SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
LT+L+ SLN+ G D+ ++ L +L L LS T++ G+ L L+ L S+++
Sbjct: 248 LTHLDISLNV---GFTDQFAADVGKLSSLTLLNLSKTELTDEGIPALMELSQLRSLDVGK 304
Query: 334 TGISDGSLRK-LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
T I+ +L LA L +L +L+L + LT L LT G G
Sbjct: 305 TAITHRALGPGLAKLPNLTALSLPYTNVGGKFSRYLTVLHRLTSFKTTGLLELAKG---- 360
Query: 393 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
+ +L +L++ LTD+G+ HI +L++L N+ N +T++ EL+ LTGLV
Sbjct: 361 -RYPHLTALDVGCDQLTDSGLAHIGELAALRNFNM-WNTKVTNQGAELVQQLTGLV 414
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 101/409 (24%), Positives = 170/409 (41%), Gaps = 79/409 (19%)
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
+I + L L R R+ + +E+L + + D+ + L G ++L L +S
Sbjct: 33 VIERILLYLHRTERLTLEALEFFKAFPVETLFLSNIRAVEDTWLDVLKGYSSLTYLDLSN 92
Query: 190 S-KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEK 247
S ++TD+G+A CL + L SLF ++RC+ ++D G
Sbjct: 93 SYRITDTGLA--------------------ECLKCMPQLRSLF---VDRCKRITDAGLAP 129
Query: 248 F-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG-------- 298
+ +L+ +++G IT L L L +L+ ++++ D+ L L
Sbjct: 130 LGTHCPNLRRVHVGGTMITYYALAALNSLEDLQDVSVNGTRFPDKALYTLLKRKEAPDSW 189
Query: 299 -------LCNLKCLELSDTQVGSSGLRHLSGL-TNLESINLSF-TGISDGSLRKLAGLSS 349
+ L + S T V G+R L GL +L ++NL+F GI+D S L L+S
Sbjct: 190 AEEDYGEVRQLTDFQASRTLVRDDGVRLLKGLGASLHTLNLAFNPGIADWSF--LGSLAS 247
Query: 350 LKSLNLD-------------------------ARQITDTGLAALTSLTGLTHLDLFGARI 384
L L++ ++TD G+ AL L+ L LD+ I
Sbjct: 248 LTHLDISLNVGFTDQFAADVGKLSSLTLLNLSKTELTDEGIPALMELSQLRSLDVGKTAI 307
Query: 385 TDSG-AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
T L NL +L + T+ G K + L+ L L + L LEL G
Sbjct: 308 THRALGPGLAKLPNLTALSL---PYTNVGGKFSRYLTVLHRLTSFKTTGL----LELAKG 360
Query: 444 -LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 491
L +L+V ++T +GL H+ L LR+ + + KVT + +Q
Sbjct: 361 RYPHLTALDVGCDQLTDSGLAHIGELAALRNFNMWNTKVTNQGAELVQQ 409
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 147/355 (41%), Gaps = 67/355 (18%)
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE---GCPVTA------- 218
TD K L +L I +V + + YL ++LTL LE PV
Sbjct: 13 TDESWKAPHIARKLPALPI---EVIERILLYLHRTERLTLEALEFFKAFPVETLFLSNIR 69
Query: 219 ----ACLDSLSALGSLFYLNL-NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
LD L SL YL+L N +++D G ECL K
Sbjct: 70 AVEDTWLDVLKGYSSLTYLDLSNSYRITDTGLA--------------------ECL---K 106
Query: 274 GLTNLESLNLDSCG-IGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
+ L SL +D C I D GL L C NL+ + + T + L L+ L +L+ +++
Sbjct: 107 CMPQLRSLFVDRCKRITDAGLAPLGTHCPNLRRVHVGGTMITYYALAALNSLEDLQDVSV 166
Query: 332 SFTGISDGSL-----RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+ T D +L RK A S + + RQ+TD A +L + D
Sbjct: 167 NGTRFPDKALYTLLKRKEAPDSWAEEDYGEVRQLTD--FQASRTL------------VRD 212
Query: 387 SGAAYLRNF-KNLRSLEIC-GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 444
G L+ +L +L + G+ D + L+SLT L++S N TD+ + L
Sbjct: 213 DGVRLLKGLGASLHTLNLAFNPGIADWSF--LGSLASLTHLDISLNVGFTDQFAADVGKL 270
Query: 445 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 499
+ L LN+S + +T G+ L L LRSL + +T + ++ LPNL +
Sbjct: 271 SSLTLLNLSKTELTDEGIPALMELSQLRSLDVGKTAITHRALGPGLAK-LPNLTA 324
>gi|290978509|ref|XP_002671978.1| predicted protein [Naegleria gruberi]
gi|284085551|gb|EFC39234.1| predicted protein [Naegleria gruberi]
Length = 284
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 120/254 (47%), Gaps = 26/254 (10%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S L NL +L I S++ + G+ + L+ LT LN+ +
Sbjct: 57 KSISDLKNLTTLDIGYSRIGNEGLESIGQLENLTRLNIRSNNIGL--------------- 101
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
E + +L L++G N I +E + + LT L SL +D I +EG
Sbjct: 102 -----------VEPIINLKTLTALDIGENSIGNEGVKSISKLTELTSLFIDYDDINEEGA 150
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L L NL L+L+ + +G G + + T L+ + LS IS+ + L+ L+ L L
Sbjct: 151 KYLCELPNLTILDLTGSNIGDEGAKFIGQSTKLKHLFLSLADISNVGVNYLSSLNELVDL 210
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
L I D GL L+SL L +L++ G +ITD G ++R +NL+ + I LT G
Sbjct: 211 ILSLNDIGDEGLKHLSSLKMLNYLNVSGNQITDEGVVFIREMENLKRISITNNLLTAVGE 270
Query: 414 KHIKDLSSLTLLNL 427
I+++S T L+L
Sbjct: 271 NLIQEMSITTDLDL 284
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 138/291 (47%), Gaps = 33/291 (11%)
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL-NLNRCQLSDDGCEKFSKIGSLK- 255
+++K ++L L +++ L L L + N+ + + DG + I LK
Sbjct: 5 SFIKLFRELELFEGIDNEISSDFLKEFKYLRELTIIRNMAKHESILDGVGRAKSISDLKN 64
Query: 256 --VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG-DEGLVNLTGLCNLKCLELSDTQV 312
L++G++ I +E L + L NL LN+ S IG E ++NL L L++ + +
Sbjct: 65 LTTLDIGYSRIGNEGLESIGQLENLTRLNIRSNNIGLVEPIINLKTLT---ALDIGENSI 121
Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
G+ G++ +S LT L S+ + + I++ + L L +L L+L I D G + T
Sbjct: 122 GNEGVKSISKLTELTSLFIDYDDINEEGAKYLCELPNLTILDLTGSNIGDEGAKFIGQST 181
Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
L HL L A I++ G YL + L L + + D G+KH LSSL +LN
Sbjct: 182 KLKHLFLSLADISNVGVNYLSSLNELVDLILSLNDIGDEGLKH---LSSLKMLNY----- 233
Query: 433 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 483
LNVS ++IT G+ ++ ++NL+ +++ + +TA
Sbjct: 234 -----------------LNVSGNQITDEGVVFIREMENLKRISITNNLLTA 267
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 118/254 (46%), Gaps = 32/254 (12%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
+ D NL +LD + +I + GLE + L NLT L+ R NN I LV+
Sbjct: 59 ISDLKNLTTLDIGYS-RIGNEGLESIGQLENLTRLNIRSNN-------------IGLVE- 103
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
++NLK L L+ N I + +K +S LT L SL I + + G
Sbjct: 104 ----------PIINLKTLTALDI----GENSIGNEGVKSISKLTELTSLFIDYDDINEEG 149
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
YL L LT+L+L G + + L +L L+ +S+ G S + L
Sbjct: 150 AKYLCELPNLTILDLTGSNIGDEGAKFIGQSTKLKHLFLSLADISNVGVNYLSSLNELVD 209
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD---TQVG 313
L L N+I DE L HL L L LN+ I DEG+V + + NLK + +++ T VG
Sbjct: 210 LILSLNDIGDEGLKHLSSLKMLNYLNVSGNQITDEGVVFIREMENLKRISITNNLLTAVG 269
Query: 314 SSGLRHLSGLTNLE 327
+ ++ +S T+L+
Sbjct: 270 ENLIQEMSITTDLD 283
>gi|51850115|dbj|BAD42399.1| leucine-rich repeat protein [Ralstonia solanacearum]
Length = 1035
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 115/376 (30%), Positives = 175/376 (46%), Gaps = 7/376 (1%)
Query: 58 SLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
S+ +DLSG S V+++GL +L L SLD + I + G + L ++LTSL+
Sbjct: 632 SVRHLDLSGCTGSAVSEAGLAYLARLP-LASLDLSDT-GIGNRGAQALAASASLTSLNLS 689
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N I G +A L LD+ + G L L SL ++ I D ++
Sbjct: 690 -GNGIGTAGAEALGRNTVLTALDISANPIRNAGAQALASSRSLTSLELR-DTGIEDGGIE 747
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L+ T L+SL IS + ++D A L + LT L GC +T L+ + SL L
Sbjct: 748 ALAANTVLRSLDISGNDLSDQSAAALAANRTLTSLKANGCGLTNDMAQQLARIRSLRTLE 807
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+ + D G ++ SL+ LNL N IT + L L L+SL++ G GD G +
Sbjct: 808 VGSNSIGDAGVLTIARNASLRSLNLSRNSITPQGLYPLALSRTLKSLDVSRIGCGDRGAL 867
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
L+G L L+L ++ S G R L+ L S++L I + R LA L SLN
Sbjct: 868 LLSGNRALTSLKLGFNRISSEGARRLAANRTLVSLDLRGNTIDVAAARALANAEPLASLN 927
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
+ ++ D AL LT LD+ R++ A L + L SL+I + G +
Sbjct: 928 VSDCRLDDAVACALAESRTLTSLDVSWNRLSHRAARALADNPVLASLDISHNDIGPEGAQ 987
Query: 415 HIKDLSSLTLLNLSQN 430
+ D +SLT+L+ N
Sbjct: 988 ALADSASLTILDARAN 1003
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 149/337 (44%), Gaps = 54/337 (16%)
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC---QLSDDGCEKFSKI 251
+ + L+ L L+ G P++ A L +L S+ +L+L+ C +S+ G +++
Sbjct: 601 AAFSRLRNYPALESLSFHG-PLSLADLRALPP--SVRHLDLSGCTGSAVSEAGLAYLARL 657
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
L L+L I + L +L SLNL GIG G L L L++S
Sbjct: 658 -PLASLDLSDTGIGNRGAQALAASASLTSLNLSGNGIGTAGAEALGRNTVLTALDISANP 716
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
+ ++G + L+ +L S+ L TGI DG + LA + L+SL++ ++D AAL +
Sbjct: 717 IRNAGAQALASSRSLTSLELRDTGIEDGGIEALAANTVLRSLDISGNDLSDQSAAALAAN 776
Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
LT L G +T+ A L ++LR+LE+ + DAGV I +SL LNLS+N
Sbjct: 777 RTLTSLKANGCGLTNDMAQQLARIRSLRTLEVGSNSIGDAGVLTIARNASLRSLNLSRNS 836
Query: 432 -----------NLTDKTLE------------LISGLTGLVSLNVSNSRITSAGLRHLKP- 467
+ T K+L+ L+SG L SL + +RI+S G R L
Sbjct: 837 ITPQGLYPLALSRTLKSLDVSRIGCGDRGALLLSGNRALTSLKLGFNRISSEGARRLAAN 896
Query: 468 -----------------------LKNLRSLTLESCKV 481
+ L SL + C++
Sbjct: 897 RTLVSLDLRGNTIDVAAARALANAEPLASLNVSDCRL 933
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 105/219 (47%), Gaps = 6/219 (2%)
Query: 268 CLVHLKGLT-NLESLNLDSC---GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
L L+ L ++ L+L C + + GL L L L L+LSDT +G+ G + L+
Sbjct: 622 SLADLRALPPSVRHLDLSGCTGSAVSEAGLAYLARLP-LASLDLSDTGIGNRGAQALAAS 680
Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
+L S+NLS GI L + L +L++ A I + G AL S LT L+L
Sbjct: 681 ASLTSLNLSGNGIGTAGAEALGRNTVLTALDISANPIRNAGAQALASSRSLTSLELRDTG 740
Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
I D G L LRSL+I G L+D + +LT L + C LT+ + ++
Sbjct: 741 IEDGGIEALAANTVLRSLDISGNDLSDQSAAALAANRTLTSLK-ANGCGLTNDMAQQLAR 799
Query: 444 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
+ L +L V ++ I AG+ + +LRSL L +T
Sbjct: 800 IRSLRTLEVGSNSIGDAGVLTIARNASLRSLNLSRNSIT 838
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 137/316 (43%), Gaps = 22/316 (6%)
Query: 14 LVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSG 73
L SR LT + L RD G+ D ++ +A+ + L S+D+SG+D++D
Sbjct: 725 LASSRSLTSLEL---RDT-----------GIEDGGIEALAAN-TVLRSLDISGNDLSDQS 769
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGG--LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
L L SL N C +D L +R L L S N+I G+ A
Sbjct: 770 AAALAANRTLTSLKANGCGLTNDMAQQLARIRSLRTLEVGS----NSIGDAGVLTIARNA 825
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
+L L+L R + GL L L+SL++ C D LSG L SL++ ++
Sbjct: 826 SLRSLNLSRNSITPQGLYPLALSRTLKSLDVSRIGC-GDRGALLLSGNRALTSLKLGFNR 884
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
++ G L + L L+L G + A +L+ L LN++ C+L D ++
Sbjct: 885 ISSEGARRLAANRTLVSLDLRGNTIDVAAARALANAEPLASLNVSDCRLDDAVACALAES 944
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
+L L++ +N ++ L L SL++ IG EG L +L L+ +
Sbjct: 945 RTLTSLDVSWNRLSHRAARALADNPVLASLDISHNDIGPEGAQALADSASLTILDARANR 1004
Query: 312 VGSSGLRHLSGLTNLE 327
+G +G R L T +
Sbjct: 1005 IGEAGARLLEANTRMR 1020
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 137/332 (41%), Gaps = 67/332 (20%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D + LSGL + L+ +LKG TL +L+ P T L
Sbjct: 94 DRRALSGLRDHPHLES----------VHLKG--DFTLADLKALPTT------------LR 129
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
+L+L+ C GS K + +L GL LESLN+ IGD
Sbjct: 130 HLDLSEC------------TGSAKSF---------RAIAYLAGLP-LESLNVAGAEIGDG 167
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
G L +LK L + + +SG R L+ LES++L+ I D + LAG SL+
Sbjct: 168 GARLLAANPSLKSLNAASGGISASGARMLAESPTLESLDLTQNAIGDAGAQALAGSRSLR 227
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDL------------------FGARITDSGAAYLR 393
L + +TD G AL L LDL IT GA L
Sbjct: 228 HLAVRNGLVTDVGTRALALNPALVSLDLGNLVTETGNQVEQDGYDKTANNITAQGAWALA 287
Query: 394 NFKNLRSLEICGGGL-TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
++L+SL + G L D GV+ + +LT LN++ N+T + + ++ L SL+V
Sbjct: 288 QNRSLKSLSVQGNDLCGDDGVRALARNRTLTSLNVAF-TNMTSASAKALADNPVLTSLSV 346
Query: 453 S-NSRITSAGLRHLKPLKNLRSLTLESCKVTA 483
N + AG L ++L SL ++A
Sbjct: 347 RWNYGLDDAGAMELARSRSLTSLDARDTGMSA 378
>gi|149918909|ref|ZP_01907395.1| hypothetical protein PPSIR1_16600 [Plesiocystis pacifica SIR-1]
gi|149820283|gb|EDM79700.1| hypothetical protein PPSIR1_16600 [Plesiocystis pacifica SIR-1]
Length = 1503
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 117/237 (49%), Gaps = 12/237 (5%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGI---AYLKGLQKLTLLNLEGCPVTAACLDSL 224
I D+ ++ LS LT L+ L +S + +T +G+ +++ GL +L+L + +G A + L
Sbjct: 90 IDDAMVEVLSKLTGLQILDLSRNAITATGVESLSWIGGLTQLSLRSNQGVGDRGAEI--L 147
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
++L SL LNL+RC + G + K+G L+ L L N I DE V L L L L L
Sbjct: 148 ASLRSLEVLNLDRCGIGPIGAQALGKLGELRELVLSHNRILDEGAVALAKLAKLRELELS 207
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRK 343
C +GDEG L L L+ L L VG +G L L+ + L+ + + R
Sbjct: 208 VCQLGDEGAAALAKLRALEILRLGGNHVGPKAAAAFAGHLDKLQELELAVNQVGEEGARS 267
Query: 344 LAG-LSSLKSLNLDARQITDTGLAALTSLTG-----LTHLDLFGARITDSGAAYLRN 394
L+G L L+ L+L +I D GL L G L HLDL IT + LR
Sbjct: 268 LSGMLGHLRRLDLSYNKIGDAGLEGLLQPWGKRRVALEHLDLIENGITLVSPSVLRT 324
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 108/234 (46%), Gaps = 31/234 (13%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--GL 148
+ I D +E L L+ L L RN AITA G+++ + + L +L L R + G G
Sbjct: 87 ALDIDDAMVEVLSKLTGLQILDLSRN-AITATGVESLSWIGGLTQLSL-RSNQGVGDRGA 144
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
L L LE LN+ C I + L L L+ L +S +++ D G L L KL
Sbjct: 145 EILASLRSLEVLNLDRCG-IGPIGAQALGKLGELRELVLSHNRILDEGAVALAKLAKLR- 202
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L L+ CQL D+G +K+ +L++L LG N + +
Sbjct: 203 -----------------------ELELSVCQLGDEGAAALAKLRALEILRLGGNHVGPKA 239
Query: 269 LVHLKG-LTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQVGSSGLRHL 320
G L L+ L L +G+EG +L+G L +L+ L+LS ++G +GL L
Sbjct: 240 AAAFAGHLDKLQELELAVNQVGEEGARSLSGMLGHLRRLDLSYNKIGDAGLEGL 293
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 114/258 (44%), Gaps = 8/258 (3%)
Query: 236 NRCQLSDDGCEKFSKI----GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
RC +S G + + + L+ L L +I D + L LT L+ L+L I
Sbjct: 58 ERCFVSGFGADVLAALVERGQGLERLALVALDIDDAMVEVLSKLTGLQILDLSRNAITAT 117
Query: 292 GLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
G+ +L+ + L L L Q VG G L+ L +LE +NL GI + L L L
Sbjct: 118 GVESLSWIGGLTQLSLRSNQGVGDRGAEILASLRSLEVLNLDRCGIGPIGAQALGKLGEL 177
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL-T 409
+ L L +I D G AL L L L+L ++ D GAA L + L L + G +
Sbjct: 178 RELVLSHNRILDEGAVALAKLAKLRELELSVCQLGDEGAAALAKLRALEILRLGGNHVGP 237
Query: 410 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG-LVSLNVSNSRITSAGLRHLKPL 468
A L L L L+ N + ++ +SG+ G L L++S ++I AGL L
Sbjct: 238 KAAAAFAGHLDKLQELELAVN-QVGEEGARSLSGMLGHLRRLDLSYNKIGDAGLEGLLQP 296
Query: 469 KNLRSLTLESCKVTANDI 486
R + LE + N I
Sbjct: 297 WGKRRVALEHLDLIENGI 314
>gi|91085811|ref|XP_974701.1| PREDICTED: similar to partner of paired CG9952-PA [Tribolium
castaneum]
Length = 439
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 109/321 (33%), Positives = 161/321 (50%), Gaps = 28/321 (8%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM-----KL 157
RG+ + LS R++ QG+ NL L+L C + G V + L
Sbjct: 121 RGIKRVQVLSLRKSLRDVIQGIP------NLESLNLRGCYNV--GDVGISHAFVADSPTL 172
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
L++ C +TD+ + ++ L NL+ L++ CS VT+SG+ + GL+KL LNL C
Sbjct: 173 TELDLSLCKQVTDTSLTRIAQHLKNLEVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSC 232
Query: 215 -PVTAACLDSL-SALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLV 270
V + L S SL +L L CQ LSD+ + + + SL +NL F ITD L
Sbjct: 233 WHVGDQGIQHLASGNPSLEHLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSGLK 292
Query: 271 HLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNL 326
HL +TNL LNL SC I D G+ L G + L++S ++G L H+S GL NL
Sbjct: 293 HLAKMTNLRELNLRSCDNISDTGMAFLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNL 352
Query: 327 ESINLSFTGISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-A 382
++ +S +SD L K+A L L++LN+ ++TD GL + SL L +DL+G
Sbjct: 353 RNLLMSACQLSDEGLAKIANSLHDLETLNIGQCSRVTDKGLTTIAESLLRLKCIDLYGCT 412
Query: 383 RITDSGAAYLRNFKNLRSLEI 403
RIT G + L L +
Sbjct: 413 RITTVGLERIMKLPQLSVLNL 433
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 164/295 (55%), Gaps = 18/295 (6%)
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRC-QLSDDGCEKFSK-IGSL 254
++G+ L LNL GC S + + +L L+L+ C Q++D + ++ + +L
Sbjct: 139 IQGIPNLESLNLRGCYNVGDVGISHAFVADSPTLTELDLSLCKQVTDTSLTRIAQHLKNL 198
Query: 255 KVLNLG-FNEITDECLVHLK-GLTNLESLNLDSCG-IGDEGLVNL-TGLCNLKCLELSDT 310
+VL LG + +T+ L+ + GL L+ LNL SC +GD+G+ +L +G +L+ L L D
Sbjct: 199 EVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSCWHVGDQGIQHLASGNPSLEHLGLQDC 258
Query: 311 Q-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAA 367
Q + L+H +GLT+L SINLSF I+D L+ LA +++L+ LNL + I+DTG+A
Sbjct: 259 QKLSDEALKHATGLTSLISINLSFCVSITDSGLKHLAKMTNLRELNLRSCDNISDTGMAF 318
Query: 368 LTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHIKD-LSSLT 423
L + ++ LD+ F +I D ++ + NLR+L + L+D G+ I + L L
Sbjct: 319 LAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLRNLLMSACQLSDEGLAKIANSLHDLE 378
Query: 424 LLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 476
LN+ Q +TDK L I+ L L +++ +RIT+ GL + L L L L
Sbjct: 379 TLNIGQCSRVTDKGLTTIAESLLRLKCIDLYGCTRITTVGLERIMKLPQLSVLNL 433
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 105/199 (52%), Gaps = 7/199 (3%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
V D+ + +AS SL + L ++D L H ++L S++ +FC+ I+D GL+HL
Sbjct: 235 VGDQGIQHLASGNPSLEHLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSGLKHL 294
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HGGLVNL-KGLMKLES 159
++NL L+ R + I+ GM A G + LD+ C +I LV++ +GL L +
Sbjct: 295 AKMTNLRELNLRSCDNISDTGMAFLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLRN 354
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-V 216
L + C + K + L +L++L I CS+VTD G+ + + L +L ++L GC +
Sbjct: 355 LLMSACQLSDEGLAKIANSLHDLETLNIGQCSRVTDKGLTTIAESLLRLKCIDLYGCTRI 414
Query: 217 TAACLDSLSALGSLFYLNL 235
T L+ + L L LNL
Sbjct: 415 TTVGLERIMKLPQLSVLNL 433
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 92/177 (51%), Gaps = 24/177 (13%)
Query: 320 LSGLTNLESINLSF------TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTS-L 371
+ G+ NLES+NL GIS + A +L L+L +Q+TDT L + L
Sbjct: 139 IQGIPNLESLNLRGCYNVGDVGISHAFV---ADSPTLTELDLSLCKQVTDTSLTRIAQHL 195
Query: 372 TGLTHLDLFG-ARITDSG----AAYLRNFK--NLRSLEICGGGLTDAGVKHIKD-LSSLT 423
L L+L G + +T+SG A L+ K NLRS G D G++H+ SL
Sbjct: 196 KNLEVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSCWHVG----DQGIQHLASGNPSLE 251
Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 479
L L L+D+ L+ +GLT L+S+N+S IT +GL+HL + NLR L L SC
Sbjct: 252 HLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSGLKHLAKMTNLRELNLRSC 308
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 122/237 (51%), Gaps = 24/237 (10%)
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVN--------LTGLCNLKCLELSDTQVGSSGLRHLSG 322
++G+ NLESLNL C +GD G+ + LT L C +++DT + R
Sbjct: 139 IQGIPNLESLNLRGCYNVGDVGISHAFVADSPTLTELDLSLCKQVTDTSLT----RIAQH 194
Query: 323 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLD 378
L NLE + L + +++ L +A GL LK LNL + + D G+ L S L HL
Sbjct: 195 LKNLEVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSCWHVGDQGIQHLASGNPSLEHLG 254
Query: 379 LFG-ARITDSGAAYLRNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
L +++D + +L S L C +TD+G+KH+ +++L LNL N++D
Sbjct: 255 LQDCQKLSDEALKHATGLTSLISINLSFCVS-ITDSGLKHLAKMTNLRELNLRSCDNISD 313
Query: 436 KTLELIS-GLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 489
+ ++ G + + SL+VS +I L H+ + L NLR+L + +C+++ + ++
Sbjct: 314 TGMAFLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLRNLLMSACQLSDEGLAKI 370
>gi|270010132|gb|EFA06580.1| hypothetical protein TcasGA2_TC009492 [Tribolium castaneum]
Length = 474
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 109/321 (33%), Positives = 161/321 (50%), Gaps = 28/321 (8%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM-----KL 157
RG+ + LS R++ QG+ NL L+L C + G V + L
Sbjct: 156 RGIKRVQVLSLRKSLRDVIQGIP------NLESLNLRGCYNV--GDVGISHAFVADSPTL 207
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
L++ C +TD+ + ++ L NL+ L++ CS VT+SG+ + GL+KL LNL C
Sbjct: 208 TELDLSLCKQVTDTSLTRIAQHLKNLEVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSC 267
Query: 215 -PVTAACLDSL-SALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLV 270
V + L S SL +L L CQ LSD+ + + + SL +NL F ITD L
Sbjct: 268 WHVGDQGIQHLASGNPSLEHLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSGLK 327
Query: 271 HLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNL 326
HL +TNL LNL SC I D G+ L G + L++S ++G L H+S GL NL
Sbjct: 328 HLAKMTNLRELNLRSCDNISDTGMAFLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNL 387
Query: 327 ESINLSFTGISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-A 382
++ +S +SD L K+A L L++LN+ ++TD GL + SL L +DL+G
Sbjct: 388 RNLLMSACQLSDEGLAKIANSLHDLETLNIGQCSRVTDKGLTTIAESLLRLKCIDLYGCT 447
Query: 383 RITDSGAAYLRNFKNLRSLEI 403
RIT G + L L +
Sbjct: 448 RITTVGLERIMKLPQLSVLNL 468
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 164/295 (55%), Gaps = 18/295 (6%)
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRC-QLSDDGCEKFSK-IGSL 254
++G+ L LNL GC S + + +L L+L+ C Q++D + ++ + +L
Sbjct: 174 IQGIPNLESLNLRGCYNVGDVGISHAFVADSPTLTELDLSLCKQVTDTSLTRIAQHLKNL 233
Query: 255 KVLNLG-FNEITDECLVHLK-GLTNLESLNLDSCG-IGDEGLVNL-TGLCNLKCLELSDT 310
+VL LG + +T+ L+ + GL L+ LNL SC +GD+G+ +L +G +L+ L L D
Sbjct: 234 EVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSCWHVGDQGIQHLASGNPSLEHLGLQDC 293
Query: 311 Q-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAA 367
Q + L+H +GLT+L SINLSF I+D L+ LA +++L+ LNL + I+DTG+A
Sbjct: 294 QKLSDEALKHATGLTSLISINLSFCVSITDSGLKHLAKMTNLRELNLRSCDNISDTGMAF 353
Query: 368 LTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHIKD-LSSLT 423
L + ++ LD+ F +I D ++ + NLR+L + L+D G+ I + L L
Sbjct: 354 LAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLRNLLMSACQLSDEGLAKIANSLHDLE 413
Query: 424 LLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 476
LN+ Q +TDK L I+ L L +++ +RIT+ GL + L L L L
Sbjct: 414 TLNIGQCSRVTDKGLTTIAESLLRLKCIDLYGCTRITTVGLERIMKLPQLSVLNL 468
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 105/199 (52%), Gaps = 7/199 (3%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
V D+ + +AS SL + L ++D L H ++L S++ +FC+ I+D GL+HL
Sbjct: 270 VGDQGIQHLASGNPSLEHLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSGLKHL 329
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HGGLVNL-KGLMKLES 159
++NL L+ R + I+ GM A G + LD+ C +I LV++ +GL L +
Sbjct: 330 AKMTNLRELNLRSCDNISDTGMAFLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLRN 389
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-V 216
L + C + K + L +L++L I CS+VTD G+ + + L +L ++L GC +
Sbjct: 390 LLMSACQLSDEGLAKIANSLHDLETLNIGQCSRVTDKGLTTIAESLLRLKCIDLYGCTRI 449
Query: 217 TAACLDSLSALGSLFYLNL 235
T L+ + L L LNL
Sbjct: 450 TTVGLERIMKLPQLSVLNL 468
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 92/177 (51%), Gaps = 24/177 (13%)
Query: 320 LSGLTNLESINLSF------TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTS-L 371
+ G+ NLES+NL GIS + A +L L+L +Q+TDT L + L
Sbjct: 174 IQGIPNLESLNLRGCYNVGDVGISHAFV---ADSPTLTELDLSLCKQVTDTSLTRIAQHL 230
Query: 372 TGLTHLDLFG-ARITDSG----AAYLRNFK--NLRSLEICGGGLTDAGVKHIKD-LSSLT 423
L L+L G + +T+SG A L+ K NLRS G D G++H+ SL
Sbjct: 231 KNLEVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSCWHVG----DQGIQHLASGNPSLE 286
Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 479
L L L+D+ L+ +GLT L+S+N+S IT +GL+HL + NLR L L SC
Sbjct: 287 HLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSGLKHLAKMTNLRELNLRSC 343
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 122/237 (51%), Gaps = 24/237 (10%)
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVN--------LTGLCNLKCLELSDTQVGSSGLRHLSG 322
++G+ NLESLNL C +GD G+ + LT L C +++DT + R
Sbjct: 174 IQGIPNLESLNLRGCYNVGDVGISHAFVADSPTLTELDLSLCKQVTDTSLT----RIAQH 229
Query: 323 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLD 378
L NLE + L + +++ L +A GL LK LNL + + D G+ L S L HL
Sbjct: 230 LKNLEVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSCWHVGDQGIQHLASGNPSLEHLG 289
Query: 379 LFG-ARITDSGAAYLRNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
L +++D + +L S L C +TD+G+KH+ +++L LNL N++D
Sbjct: 290 LQDCQKLSDEALKHATGLTSLISINLSFCVS-ITDSGLKHLAKMTNLRELNLRSCDNISD 348
Query: 436 KTLELIS-GLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 489
+ ++ G + + SL+VS +I L H+ + L NLR+L + +C+++ + ++
Sbjct: 349 TGMAFLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLRNLLMSACQLSDEGLAKI 405
>gi|291001373|ref|XP_002683253.1| hypothetical protein NAEGRDRAFT_45222 [Naegleria gruberi]
gi|284096882|gb|EFC50509.1| hypothetical protein NAEGRDRAFT_45222 [Naegleria gruberi]
Length = 461
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 91/340 (26%), Positives = 162/340 (47%), Gaps = 37/340 (10%)
Query: 68 DVTDSGLIH---LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
D+ +G+I + +NLQ L+ N C +I + G++ + L NL LS N + A+G+
Sbjct: 145 DIPKAGIIFCQAISQLTNLQKLNVNNC-KIGNLGVQFITQLGNLMELSVI-NTGMDAKGL 202
Query: 125 KAFAG-LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
A L NL KL + L N+K +L SL++ + + K +S + NL
Sbjct: 203 NLIATRLKNLTKLQFNGTVQHVTSLSNMK---QLTSLSMGFDVDVDVKGAKAISEMNNLT 259
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSD 242
+L ++ + D G+ + + +LT L + G +T L L L L LNLN + +
Sbjct: 260 NLSLNTN---DEGLEEICKMTQLTSLKVCGFYLTTLGLKFLPRLKKLRKLNLNDHEDFGN 316
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
+G + S+ L L SL ++ GI +G +T L L
Sbjct: 317 EGAKLISE------------------------LDQLTSLEINDIGIDKKGAKFITNLKQL 352
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L +S+ + + G+++L+ L L ++N FT I + ++ L+ +++LK LN+ + D
Sbjct: 353 TSLTISNNPIFNEGVKYLTELPQLTNLNARFTKIDNEGVKYLSEMANLKILNIKRNYVQD 412
Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
G+ ++ + LT LD+ I++ G A L+ K L+ L+
Sbjct: 413 LGVESICGMKNLTELDIEQNEISEEGVAKLKEMKQLKVLK 452
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 130/273 (47%), Gaps = 7/273 (2%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G++ K +++IA++ +L + +G T + L + L SL F + + G + +
Sbjct: 196 GMDAKGLNLIATRLKNLTKLQFNG---TVQHVTSLSNMKQLTSLSMGFDVDVDVKGAKAI 252
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
++NLT+LS N+ +G++ + L L + GL L L KL LN+
Sbjct: 253 SEMNNLTNLSLNTND----EGLEEICKMTQLTSLKVCGFYLTTLGLKFLPRLKKLRKLNL 308
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
+ K +S L L SL+I+ + G ++ L++LT L + P+ +
Sbjct: 309 NDHEDFGNEGAKLISELDQLTSLEINDIGIDKKGAKFITNLKQLTSLTISNNPIFNEGVK 368
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
L+ L L LN ++ ++G + S++ +LK+LN+ N + D + + G+ NL L+
Sbjct: 369 YLTELPQLTNLNARFTKIDNEGVKYLSEMANLKILNIKRNYVQDLGVESICGMKNLTELD 428
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
++ I +EG+ L + LK L+ +D +
Sbjct: 429 IEQNEISEEGVAKLKEMKQLKVLKKADQRASKE 461
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 132/266 (49%), Gaps = 23/266 (8%)
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKG--------------LTNLESLNLDSCGIGDEGLV 294
+++ SL++ N+ EI+ E H+K LTNL+ LN+++C IG+ G+
Sbjct: 121 TQLTSLEIPNVDLGEIS-ESYFHVKDIPKAGIIFCQAISQLTNLQKLNVNNCKIGNLGVQ 179
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
+T L NL L + +T + + GL ++ L NL + + T SL + L+SL S+
Sbjct: 180 FITQLGNLMELSVINTGMDAKGLNLIATRLKNLTKLQFNGTVQHVTSLSNMKQLTSL-SM 238
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
D + G A++ + LT+L L D G + L SL++CG LT G+
Sbjct: 239 GFDV-DVDVKGAKAISEMNNLTNLSL---NTNDEGLEEICKMTQLTSLKVCGFYLTTLGL 294
Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 473
K + L L LNL+ + + ++ +LIS L L SL +++ I G + + LK L S
Sbjct: 295 KFLPRLKKLRKLNLNDHEDFGNEGAKLISELDQLTSLEINDIGIDKKGAKFITNLKQLTS 354
Query: 474 LTLESCKVTANDIKRLQSRDLPNLVS 499
LT+ + + +K L +LP L +
Sbjct: 355 LTISNNPIFNEGVKYLT--ELPQLTN 378
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 91/402 (22%), Positives = 178/402 (44%), Gaps = 51/402 (12%)
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI-TDSDMKPLSGLTNLKSLQISC---- 189
K + C+ I + N+ + K L +++C I ++ M L N+ L+IS
Sbjct: 49 KFKILTCSLISKQVFNV--IRKYSKLILRFCRPIESNEKMMNNQFLENIVELRISTIMLN 106
Query: 190 SKVTDSGIAYLKGLQKLT---------------LLNLEGCPVTAACL-DSLSALGSLFYL 233
+KV + + K + +LT +++ P ++S L +L L
Sbjct: 107 AKVLANILESFKFMTQLTSLEIPNVDLGEISESYFHVKDIPKAGIIFCQAISQLTNLQKL 166
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNL--------GFNEITDE-----------CLVHLKG 274
N+N C++ + G + +++G+L L++ G N I + H+
Sbjct: 167 NVNNCKIGNLGVQFITQLGNLMELSVINTGMDAKGLNLIATRLKNLTKLQFNGTVQHVTS 226
Query: 275 LTNLESLNLDSCG----IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
L+N++ L S G + +G ++ + NL L L+ GL + +T L S+
Sbjct: 227 LSNMKQLTSLSMGFDVDVDVKGAKAISEMNNLTNLSLN---TNDEGLEEICKMTQLTSLK 283
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
+ ++ L+ L L L+ LNL D + G ++ L LT L++ I GA
Sbjct: 284 VCGFYLTTLGLKFLPRLKKLRKLNLNDHEDFGNEGAKLISELDQLTSLEINDIGIDKKGA 343
Query: 390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 449
++ N K L SL I + + GVK++ +L LT LN ++ + ++ ++ +S + L
Sbjct: 344 KFITNLKQLTSLTISNNPIFNEGVKYLTELPQLTNLN-ARFTKIDNEGVKYLSEMANLKI 402
Query: 450 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 491
LN+ + + G+ + +KNL L +E +++ + +L+
Sbjct: 403 LNIKRNYVQDLGVESICGMKNLTELDIEQNEISEEGVAKLKE 444
>gi|17647819|ref|NP_523812.1| partner of paired, isoform A [Drosophila melanogaster]
gi|194884489|ref|XP_001976275.1| GG20101 [Drosophila erecta]
gi|10441427|gb|AAG17034.1|AF187980_1 Partner of Paired [Drosophila melanogaster]
gi|7291460|gb|AAF46886.1| partner of paired, isoform A [Drosophila melanogaster]
gi|21430560|gb|AAM50958.1| RE01138p [Drosophila melanogaster]
gi|190659462|gb|EDV56675.1| GG20101 [Drosophila erecta]
gi|220947678|gb|ACL86382.1| CG9952-PA [synthetic construct]
gi|220957060|gb|ACL91073.1| ppa-PA [synthetic construct]
Length = 538
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 121/374 (32%), Positives = 188/374 (50%), Gaps = 68/374 (18%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 202 SPSLFNCLV-KRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 243
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAI 119
+V D L H D NL++LD + C QI+D L +HLR NL +L I
Sbjct: 244 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLR---NLETLELGGCCNI 300
Query: 120 TAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCIT 169
T G+ A GL L L+L C I G+ +L G ++LE L ++ C ++
Sbjct: 301 TNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLS 360
Query: 170 DSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
D + ++ GLT+LKS+ +S C VTDSG+ +L + KL LNL C D++S +
Sbjct: 361 DEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDI 413
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDS 285
G + L++ G S I SL V F ++I+D+ L H+ +GL L SL+L+
Sbjct: 414 GMAY--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQ 458
Query: 286 CGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSL 341
C I D G++ + L L+ L + +++ GL+ L+ LTNL++I+L T +S +
Sbjct: 459 CQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGI 518
Query: 342 RKLAGLSSLKSLNL 355
+ L L+ LNL
Sbjct: 519 DIIMKLPKLQKLNL 532
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 110/352 (31%), Positives = 172/352 (48%), Gaps = 58/352 (16%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ G+ A +G N+ ++L + L L
Sbjct: 212 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLGHAFSV--------DLPNL 263
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
++L++ C ITD+ + ++ L NL++L++ C +T++G+ + GL+KL LNL C
Sbjct: 264 KTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSC 323
Query: 215 PVTA-------ACLDSLSALGSL--FYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A +A G+L YL L CQ LSD+ ++ + SLK +NL F
Sbjct: 324 WHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 383
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
+TD L HL + LE LNL SC I D G+ LT G SG
Sbjct: 384 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTE--------------GGSG----- 424
Query: 322 GLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLD 378
+ S+++SF ISD +L +A GL L+SL+L+ QITD G+ + +L L +L+
Sbjct: 425 ----INSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLN 480
Query: 379 LFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 427
+ +RITD G L + NL+++++ G L+ G+ I L L LNL
Sbjct: 481 IGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 532
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 106/339 (31%), Positives = 162/339 (47%), Gaps = 53/339 (15%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
G+ L SLN+ C + D ++ L NLK+L +S C ++TD+ + + + L+ L
Sbjct: 232 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLET 291
Query: 209 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L GC L L L +LNL C +SD G IG L GF+ T
Sbjct: 292 LELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQG------IGHLA----GFSRET 341
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
E +L L+ G+ D C LSD +G GLT+
Sbjct: 342 AE-----------GNLQLEYLGLQD-------------CQRLSDEALGHIA----QGLTS 373
Query: 326 LESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FG 381
L+SINLSF ++D L+ LA + L+ LNL + I+D G+A LT +G+ LD+ F
Sbjct: 374 LKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFC 433
Query: 382 ARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE 439
+I+D ++ + LRSL + +TD G+ I K L L LN+ Q +TDK L+
Sbjct: 434 DKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLNIGQCSRITDKGLQ 493
Query: 440 -LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 476
L LT L ++++ ++++S G+ + L L+ L L
Sbjct: 494 TLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 532
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 119/244 (48%), Gaps = 34/244 (13%)
Query: 274 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 324
G+ L SLNL C +G V+L L L C +++DT +G +HL L
Sbjct: 232 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLE 290
Query: 325 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-----GLT 375
LE N++ TG+ L GL LK LNL + I+D G+ L + G
Sbjct: 291 TLELGGCCNITNTGL----LLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNL 346
Query: 376 HLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 428
L+ G R++D ++ + +L+S L C +TD+G+KH+ + L LNL
Sbjct: 347 QLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 405
Query: 429 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAND 485
N++D + L G +G+ SL+VS +I+ L H+ + L LRSL+L C++T +
Sbjct: 406 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHG 465
Query: 486 IKRL 489
+ ++
Sbjct: 466 MLKI 469
>gi|334117577|ref|ZP_08491668.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
FGP-2]
gi|333460686|gb|EGK89294.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
FGP-2]
Length = 348
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 97/259 (37%), Positives = 143/259 (55%), Gaps = 20/259 (7%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D+KPL+ LTNL L + +++ D I L L LT L+L P+ + L++L +L
Sbjct: 91 DIKPLASLTNLTWLFLGSNQIGD--IKPLASLTNLTRLSLSENPI--GDIKPLASLTNLT 146
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
+L+L+ Q+ D + + + +L +L L N+I D + L LTNL L L IGD
Sbjct: 147 FLDLSDNQIGD--IKPLASLTNLTILFLSDNQIGD--IKPLASLTNLTFLFLSDNKIGD- 201
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
+ L L NL L+LSD Q+G ++ L+ LTNL S++LS I G ++ LA L++L
Sbjct: 202 -IKPLASLTNLTFLDLSDNQIGD--IKPLASLTNLSSLDLSDNRI--GDIKPLASLTNLT 256
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
LNL QI D + L SLT LT L+L G I D L + NLRSL++ + D
Sbjct: 257 RLNLLDNQIGD--IKPLASLTNLTRLNLDGNVIGD--IKPLASLTNLRSLDLSRNVIGD- 311
Query: 412 GVKHIKDLSSLTLLNLSQN 430
+K + L+ LT+L+LS N
Sbjct: 312 -IKPLASLTKLTVLHLSGN 329
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 87/270 (32%), Positives = 136/270 (50%), Gaps = 20/270 (7%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
D+ D+ + +K ++L +L + F G ++ L L+NLT LS N +K
Sbjct: 83 DLFDNQIGDIKPLASLTNLTWLFLGSNQIGDIKPLASLTNLTRLSLSEN---PIGDIKPL 139
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
A L NL LDL + ++K L L +L I + + D+KPL+ LTNL L +
Sbjct: 140 ASLTNLTFLDLS-----DNQIGDIKPLASLTNLTILFLSDNQIGDIKPLASLTNLTFLFL 194
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
S +K+ D I L L LT L+L + + L++L +L L+L+ ++ D +
Sbjct: 195 SDNKIGD--IKPLASLTNLTFLDLSDNQI--GDIKPLASLTNLSSLDLSDNRIGD--IKP 248
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
+ + +L LNL N+I D + L LTNL LNLD IGD + L L NL+ L+L
Sbjct: 249 LASLTNLTRLNLLDNQIGD--IKPLASLTNLTRLNLDGNVIGD--IKPLASLTNLRSLDL 304
Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
S +G ++ L+ LT L ++LS I+
Sbjct: 305 SRNVIGD--IKPLASLTKLTVLHLSGNEIA 332
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 104/196 (53%), Gaps = 21/196 (10%)
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
T++C + L++L L+L IGD + L L NL L L Q+G ++ L+ LT
Sbjct: 66 TNDCDAADRKLSSLTKLDLFDNQIGD--IKPLASLTNLTWLFLGSNQIGD--IKPLASLT 121
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
NL ++LS I G ++ LA L++L L+L QI D + L SLT LT L L +I
Sbjct: 122 NLTRLSLSENPI--GDIKPLASLTNLTFLDLSDNQIGD--IKPLASLTNLTILFLSDNQI 177
Query: 385 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS---LTLLNLSQNCNLTDKTLELI 441
D L + NL L L+D + IK L+S LT L+LS N + D ++ +
Sbjct: 178 GD--IKPLASLTNLTFL-----FLSDNKIGDIKPLASLTNLTFLDLSDN-QIGD--IKPL 227
Query: 442 SGLTGLVSLNVSNSRI 457
+ LT L SL++S++RI
Sbjct: 228 ASLTNLSSLDLSDNRI 243
>gi|299067411|emb|CBJ38610.1| leucine-rich-repeat type III effector protein (GALA6) [Ralstonia
solanacearum CMR15]
Length = 620
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 126/439 (28%), Positives = 182/439 (41%), Gaps = 39/439 (8%)
Query: 83 LQSLDFNFCI--QISDGGLEHLRGLS----NLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L+ L+ C IS GL HL + NLT + I +G + A +LV L
Sbjct: 164 LEHLEIGRCTGSAISAEGLAHLAEMPLKSLNLTGIE------IGVEGARTLAASTSLVSL 217
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
L C L ++SL++ N I + L+ L SL + +++ D G
Sbjct: 218 TLIGCGIGDRAAQALAASQSIKSLDLS-VNMIGRDGAQALAA-APLTSLNLYYNEIGDDG 275
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
L + LT L+ + A ++L+ L LNL + G + SL
Sbjct: 276 AGALAASKTLTSLDASKNGIGNAGAEALAKNTVLRELNLAHNMIGTPGVRALAGNTSLTE 335
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
L+LG N + D + L G +L SL +D IG G L L L+LS +G G
Sbjct: 336 LDLGGNRLGDAGALELAGNRSLLSLKVDHNEIGGGGAQALARHATLTSLDLSYNAIGLWG 395
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
L T L +NLSF GI S LA SL L L+ I D G L LT
Sbjct: 396 AGALGANTTLSVLNLSFCGIDSHSACALACNKSLAELYLNGNWIGDYGALELAKNRTLTL 455
Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD------------------------AG 412
LDL I ++GA L + L SL++ G G+ D G
Sbjct: 456 LDLSRNGIRNAGAEALGGNQALTSLKLAGNGIDDDGAAALARHPRLTTLDLSRNRIGAEG 515
Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 472
+H+ ++L L+LSQN + E +S T L++LNVS++ I AG R L +L
Sbjct: 516 ARHLAQSATLAELDLSQN-RIGPDGAEALSQSTALITLNVSHNAIGEAGARSLADSASLT 574
Query: 473 SLTLESCKVTANDIKRLQS 491
SL + + K L++
Sbjct: 575 SLDARRNGIGEDGAKVLEA 593
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 150/336 (44%), Gaps = 3/336 (0%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L S++L +++ D G L L SLD + I + G E L + L L+ +
Sbjct: 259 APLTSLNLYYNEIGDDGAGALAASKTLTSLDASKN-GIGNAGAEALAKNTVLRELNLA-H 316
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N I G++A AG +L +LDL G + L G L SL + N I + L
Sbjct: 317 NMIGTPGVRALAGNTSLTELDLGGNRLGDAGALELAGNRSLLSLKVD-HNEIGGGGAQAL 375
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ L SL +S + + G L L++LNL C + + +L+ SL L LN
Sbjct: 376 ARHATLTSLDLSYNAIGLWGAGALGANTTLSVLNLSFCGIDSHSACALACNKSLAELYLN 435
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+ D G + +K +L +L+L N I + L G L SL L GI D+G L
Sbjct: 436 GNWIGDYGALELAKNRTLTLLDLSRNGIRNAGAEALGGNQALTSLKLAGNGIDDDGAAAL 495
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
L L+LS ++G+ G RHL+ L ++LS I L+ ++L +LN+
Sbjct: 496 ARHPRLTTLDLSRNRIGAEGARHLAQSATLAELDLSQNRIGPDGAEALSQSTALITLNVS 555
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
I + G +L LT LD I + GA L
Sbjct: 556 HNAIGEAGARSLADSASLTSLDARRNGIGEDGAKVL 591
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 110/392 (28%), Positives = 166/392 (42%), Gaps = 6/392 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+SL+S+ L G + D L +++SLD + + DG + LTSL+ N
Sbjct: 212 TSLVSLTLIGCGIGDRAAQALAASQSIKSLDLSVNMIGRDGA--QALAAAPLTSLNLYYN 269
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
I G A A L LD + + G L L LN+ N I ++ L
Sbjct: 270 E-IGDDGAGALAASKTLTSLDASKNGIGNAGAEALAKNTVLRELNLA-HNMIGTPGVRAL 327
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+G T+L L + +++ D+G L G + L L ++ + +L+ +L L+L+
Sbjct: 328 AGNTSLTELDLGGNRLGDAGALELAGNRSLLSLKVDHNEIGGGGAQALARHATLTSLDLS 387
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+ G +L VLNL F I L +L L L+ IGD G + L
Sbjct: 388 YNAIGLWGAGALGANTTLSVLNLSFCGIDSHSACALACNKSLAELYLNGNWIGDYGALEL 447
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
L L+LS + ++G L G L S+ L+ GI D LA L +L+L
Sbjct: 448 AKNRTLTLLDLSRNGIRNAGAEALGGNQALTSLKLAGNGIDDDGAAALARHPRLTTLDLS 507
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
+I G L L LDL RI GA L L +L + + +AG + +
Sbjct: 508 RNRIGAEGARHLAQSATLAELDLSQNRIGPDGAEALSQSTALITLNVSHNAIGEAGARSL 567
Query: 417 KDLSSLTLLNLSQNCNLTD--KTLELISGLTG 446
D +SLT L+ +N D K LE + LTG
Sbjct: 568 ADSASLTSLDARRNGIGEDGAKVLEANTRLTG 599
>gi|348505743|ref|XP_003440420.1| PREDICTED: F-box/LRR-repeat protein 14-like [Oreochromis niloticus]
Length = 403
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 108/329 (32%), Positives = 166/329 (50%), Gaps = 36/329 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFA-----GLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ + QGM G NL L G ++ + L
Sbjct: 71 RGIKKVQILSLRRSLSYVIQGMPHIESLNLCGCFNLTDNGL--------GHAFVQDISSL 122
Query: 158 ESLNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ L NL+ L++ CS +T++G+ + GL +L LNL C
Sbjct: 123 RVLNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSC 182
Query: 215 -PVTAACLDSLSALG--------SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
V+ + LS + +L L L CQ L+D + SK + LKVLNL F
Sbjct: 183 RHVSDVGIGHLSGMTRSAAEGCLTLEKLTLQDCQKLTDLSLKHISKGLNKLKVLNLSFCG 242
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
I+D ++HL +T+L SLNL SC I D G+++L G L L++S ++G L +
Sbjct: 243 GISDAGMIHLSHMTHLCSLNLRSCDNISDTGIMHLAMGSLRLTGLDVSFCDKIGDQSLAY 302
Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLT 375
++ GL L+S++L ISD + R + + LK+LN+ +ITD GL + LT LT
Sbjct: 303 IAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLT 362
Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEI 403
+DL+G +IT G + L+ L +
Sbjct: 363 GIDLYGCTKITKRGLERITQLPCLKVLNL 391
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 107/339 (31%), Positives = 180/339 (53%), Gaps = 50/339 (14%)
Query: 176 LSGLTNLKSLQI-SCSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ G+ +++SL + C +TD+G+ A+++ + L +LNL C
Sbjct: 89 IQGMPHIESLNLCGCFNLTDNGLGHAFVQDISSLRVLNLSLCK----------------- 131
Query: 233 LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GI 288
Q++D + ++ + +L+VL LG + IT+ L+ + GL L+SLNL SC +
Sbjct: 132 ------QITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHV 185
Query: 289 GDEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-IS 337
D G+ +L+G+ L+ L L D Q + L+H+S GL L+ +NLSF G IS
Sbjct: 186 SDVGIGHLSGMTRSAAEGCLTLEKLTLQDCQKLTDLSLKHISKGLNKLKVLNLSFCGGIS 245
Query: 338 DGSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL- 392
D + L+ ++ L SLNL + I+DTG+ A+ SL LT LD+ F +I D AY+
Sbjct: 246 DAGMIHLSHMTHLCSLNLRSCDNISDTGIMHLAMGSLR-LTGLDVSFCDKIGDQSLAYIA 304
Query: 393 RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSL 450
+ L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ LT L +
Sbjct: 305 QGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGI 364
Query: 451 NVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
++ ++IT GL + L L+ L L ++T ++ R
Sbjct: 365 DLYGCTKITKRGLERITQLPCLKVLNLGLWQMTESERVR 403
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 99/307 (32%), Positives = 165/307 (53%), Gaps = 26/307 (8%)
Query: 82 NLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDL 138
+++SL+ C ++D GL H ++ +S+L L+ IT + A + NL L+L
Sbjct: 94 HIESLNLCGCFNLTDNGLGHAFVQDISSLRVLNLSLCKQITDSSLGRIAQYLKNLEVLEL 153
Query: 139 ERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQIS 188
C+ I G L+ GL +L+SLN++ C ++D + LSG+T L+ L +
Sbjct: 154 GGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLSGMTRSAAEGCLTLEKLTLQ 213
Query: 189 -CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
C K+TD + ++ KGL KL +LNL C ++ A + LS + L LNL C +SD G
Sbjct: 214 DCQKLTDLSLKHISKGLNKLKVLNLSFCGGISDAGMIHLSHMTHLCSLNLRSCDNISDTG 273
Query: 245 CEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT-GL 299
+ +GSL++ L++ F ++I D+ L ++ +GL L+SL+L SC I D+G+ + +
Sbjct: 274 IMHLA-MGSLRLTGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQM 332
Query: 300 CNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLD 356
LK L + ++ GL ++ LT L I+L T I+ L ++ L LK LNL
Sbjct: 333 HELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLG 392
Query: 357 ARQITDT 363
Q+T++
Sbjct: 393 LWQMTES 399
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 104/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ K + L+ L+ +FC ISD G+ HL +++L SL+ R + I+ G+
Sbjct: 218 LTDLSLKHISKGLNKLKVLNLSFCGGISDAGMIHLSHMTHLCSLNLRSCDNISDTGIMHL 277
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C +I + +GL +L+SL++ C+ D + + + LK+
Sbjct: 278 AMGSLRLTGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKT 337
Query: 185 LQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + L +LT ++L GC +++
Sbjct: 338 LNIGQCVRITDKGLELIADHLTQLTGIDLYGCT-----------------------KITK 374
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++T+
Sbjct: 375 RGLERITQLPCLKVLNLGLWQMTE 398
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 129/255 (50%), Gaps = 34/255 (13%)
Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 322
++G+ ++ESLNL C G+G + +++ L L C +++D+ +G R
Sbjct: 89 IQGMPHIESLNLCGCFNLTDNGLGHAFVQDISSLRVLNLSLCKQITDSSLG----RIAQY 144
Query: 323 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 372
L NLE + L + I++ L +A GL LKSLNL + R ++D G+ L+ +T
Sbjct: 145 LKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLSGMTRSAAEGC 204
Query: 373 -GLTHLDLFG-ARITDSGAAYLR---NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
L L L ++TD ++ N + +L CGG ++DAG+ H+ ++ L LNL
Sbjct: 205 LTLEKLTLQDCQKLTDLSLKHISKGLNKLKVLNLSFCGG-ISDAGMIHLSHMTHLCSLNL 263
Query: 428 SQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 484
N++D + L G L L+VS +I L ++ + L L+SL+L SC ++ +
Sbjct: 264 RSCDNISDTGIMHLAMGSLRLTGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDD 323
Query: 485 DIKRL--QSRDLPNL 497
I R+ Q +L L
Sbjct: 324 GINRMVRQMHELKTL 338
>gi|290994276|ref|XP_002679758.1| predicted protein [Naegleria gruberi]
gi|284093376|gb|EFC47014.1| predicted protein [Naegleria gruberi]
Length = 205
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 105/201 (52%), Gaps = 1/201 (0%)
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
+ L SLN+ GDE ++ + L L++S ++G G ++LS + L S+N+
Sbjct: 1 MKQLISLNISGNEFGDEEAKLISEMKQLTSLDISGNRIGDEGAKYLSEMKQLISLNIGEN 60
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
I D + ++ L SLN+ QI ++ + LT L++ RI GA ++
Sbjct: 61 EIGDEGAKLISETRQLASLNICFTQIGIEEAKLISEMRQLTSLNISDNRICVEGAKWISE 120
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
+ L SL+I G + D G K I ++ LT L++S N + D+ + IS + L+SLN+
Sbjct: 121 MRQLTSLDISGNRIGDEGAKTISEMKQLTSLDISYN-RIGDEGAKFISEMKQLISLNIRG 179
Query: 455 SRITSAGLRHLKPLKNLRSLT 475
+RI G++++ +K L SLT
Sbjct: 180 NRIGDEGVKYISEMKQLTSLT 200
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 100/199 (50%)
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
+ L LN++ + D+ + S++ L L++ N I DE +L + L SLN+
Sbjct: 1 MKQLISLNISGNEFGDEEAKLISEMKQLTSLDISGNRIGDEGAKYLSEMKQLISLNIGEN 60
Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
IGDEG ++ L L + TQ+G + +S + L S+N+S I + ++
Sbjct: 61 EIGDEGAKLISETRQLASLNICFTQIGIEEAKLISEMRQLTSLNISDNRICVEGAKWISE 120
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
+ L SL++ +I D G ++ + LT LD+ RI D GA ++ K L SL I G
Sbjct: 121 MRQLTSLDISGNRIGDEGAKTISEMKQLTSLDISYNRIGDEGAKFISEMKQLISLNIRGN 180
Query: 407 GLTDAGVKHIKDLSSLTLL 425
+ D GVK+I ++ LT L
Sbjct: 181 RIGDEGVKYISEMKQLTSL 199
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 99/203 (48%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L SL IS ++ D + +++LT L++ G + LS + L LN+
Sbjct: 1 MKQLISLNISGNEFGDEEAKLISEMKQLTSLDISGNRIGDEGAKYLSEMKQLISLNIGEN 60
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
++ D+G + S+ L LN+ F +I E + + L SLN+ I EG ++
Sbjct: 61 EIGDEGAKLISETRQLASLNICFTQIGIEEAKLISEMRQLTSLNISDNRICVEGAKWISE 120
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
+ L L++S ++G G + +S + L S+++S+ I D + ++ + L SLN+
Sbjct: 121 MRQLTSLDISGNRIGDEGAKTISEMKQLTSLDISYNRIGDEGAKFISEMKQLISLNIRGN 180
Query: 359 QITDTGLAALTSLTGLTHLDLFG 381
+I D G+ ++ + LT L G
Sbjct: 181 RIGDEGVKYISEMKQLTSLTYKG 203
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 11/157 (7%)
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
+ L SLN+ + D ++ + LT LD+ G RI D GA YL K L SL I
Sbjct: 1 MKQLISLNISGNEFGDEEAKLISEMKQLTSLDISGNRIGDEGAKYLSEMKQLISLNIGEN 60
Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNC--NLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
+ D G K I + L LN+ C + + +LIS + L SLN+S++RI G +
Sbjct: 61 EIGDEGAKLISETRQLASLNI---CFTQIGIEEAKLISEMRQLTSLNISDNRICVEGAKW 117
Query: 465 LKPLKNLRSLTLESCKV------TANDIKRLQSRDLP 495
+ ++ L SL + ++ T +++K+L S D+
Sbjct: 118 ISEMRQLTSLDISGNRIGDEGAKTISEMKQLTSLDIS 154
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 105/226 (46%), Gaps = 33/226 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L+S+++SG++ D + + L SLD + +I D G ++L + L SL+ N
Sbjct: 4 LISLNISGNEFGDEEAKLISEMKQLTSLDISGN-RIGDEGAKYLSEMKQLISLNIGENE- 61
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD---SDMKP 175
I +G K + TR +L SLNI C T + K
Sbjct: 62 IGDEGAKLIS------------ETR------------QLASLNI----CFTQIGIEEAKL 93
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
+S + L SL IS +++ G ++ +++LT L++ G + ++S + L L++
Sbjct: 94 ISEMRQLTSLNISDNRICVEGAKWISEMRQLTSLDISGNRIGDEGAKTISEMKQLTSLDI 153
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
+ ++ D+G + S++ L LN+ N I DE + ++ + L SL
Sbjct: 154 SYNRIGDEGAKFISEMKQLISLNIRGNRIGDEGVKYISEMKQLTSL 199
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 1/159 (0%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
G L + +L SLNI N I D K +S L SL I +++ + +++L
Sbjct: 42 GAKYLSEMKQLISLNI-GENEIGDEGAKLISETRQLASLNICFTQIGIEEAKLISEMRQL 100
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
T LN+ + +S + L L+++ ++ D+G + S++ L L++ +N I D
Sbjct: 101 TSLNISDNRICVEGAKWISEMRQLTSLDISGNRIGDEGAKTISEMKQLTSLDISYNRIGD 160
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
E + + L SLN+ IGDEG+ ++ + L L
Sbjct: 161 EGAKFISEMKQLISLNIRGNRIGDEGVKYISEMKQLTSL 199
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 31/186 (16%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF----------------------NFC 91
S+ L S+D+SG+ + D G +L + L SL+ N C
Sbjct: 23 SEMKQLTSLDISGNRIGDEGAKYLSEMKQLISLNIGENEIGDEGAKLISETRQLASLNIC 82
Query: 92 I-QISDGGLEHLRGLS---NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
QI G+E + +S LTSL+ +N I +G K + + L LD+ G
Sbjct: 83 FTQI---GIEEAKLISEMRQLTSLNI-SDNRICVEGAKWISEMRQLTSLDISGNRIGDEG 138
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
+ + +L SL+I + N I D K +S + L SL I +++ D G+ Y+ +++LT
Sbjct: 139 AKTISEMKQLTSLDISY-NRIGDEGAKFISEMKQLISLNIRGNRIGDEGVKYISEMKQLT 197
Query: 208 LLNLEG 213
L +G
Sbjct: 198 SLTYKG 203
>gi|195487977|ref|XP_002092120.1| GE11843 [Drosophila yakuba]
gi|194178221|gb|EDW91832.1| GE11843 [Drosophila yakuba]
Length = 533
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 121/374 (32%), Positives = 188/374 (50%), Gaps = 68/374 (18%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 197 SPSLFNCLV-KRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 238
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAI 119
+V D L H D NL++LD + C QI+D L +HLR NL +L I
Sbjct: 239 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLR---NLETLELGGCCNI 295
Query: 120 TAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCIT 169
T G+ A GL L L+L C I G+ +L G ++LE L ++ C ++
Sbjct: 296 TNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLS 355
Query: 170 DSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
D + ++ GLT+LKS+ +S C VTDSG+ +L + KL LNL C D++S +
Sbjct: 356 DEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDI 408
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDS 285
G + L++ G S I SL V F ++I+D+ L H+ +GL L SL+L+
Sbjct: 409 GMAY--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQ 453
Query: 286 CGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSL 341
C I D G++ + L L+ L + +++ GL+ L+ LTNL++I+L T +S +
Sbjct: 454 CQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGI 513
Query: 342 RKLAGLSSLKSLNL 355
+ L L+ LNL
Sbjct: 514 DIIMKLPKLQKLNL 527
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 110/352 (31%), Positives = 172/352 (48%), Gaps = 58/352 (16%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ G+ A +G N+ ++L + L L
Sbjct: 207 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLGHAFSV--------DLPNL 258
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
++L++ C ITD+ + ++ L NL++L++ C +T++G+ + GL+KL LNL C
Sbjct: 259 KTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSC 318
Query: 215 PVTA-------ACLDSLSALGSL--FYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A +A G+L YL L CQ LSD+ ++ + SLK +NL F
Sbjct: 319 WHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 378
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
+TD L HL + LE LNL SC I D G+ LT G SG
Sbjct: 379 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTE--------------GGSG----- 419
Query: 322 GLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLD 378
+ S+++SF ISD +L +A GL L+SL+L+ QITD G+ + +L L +L+
Sbjct: 420 ----INSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLN 475
Query: 379 LFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 427
+ +RITD G L + NL+++++ G L+ G+ I L L LNL
Sbjct: 476 IGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 527
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 106/339 (31%), Positives = 162/339 (47%), Gaps = 53/339 (15%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
G+ L SLN+ C + D ++ L NLK+L +S C ++TD+ + + + L+ L
Sbjct: 227 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLET 286
Query: 209 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L GC L L L +LNL C +SD G IG L GF+ T
Sbjct: 287 LELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQG------IGHLA----GFSRET 336
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
E +L L+ G+ D C LSD +G GLT+
Sbjct: 337 AE-----------GNLQLEYLGLQD-------------CQRLSDEALGHIA----QGLTS 368
Query: 326 LESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FG 381
L+SINLSF ++D L+ LA + L+ LNL + I+D G+A LT +G+ LD+ F
Sbjct: 369 LKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFC 428
Query: 382 ARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE 439
+I+D ++ + LRSL + +TD G+ I K L L LN+ Q +TDK L+
Sbjct: 429 DKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLNIGQCSRITDKGLQ 488
Query: 440 -LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 476
L LT L ++++ ++++S G+ + L L+ L L
Sbjct: 489 TLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 527
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 115/237 (48%), Gaps = 34/237 (14%)
Query: 274 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 324
G+ L SLNL C +G V+L L L C +++DT +G +HL L
Sbjct: 227 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLE 285
Query: 325 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-----GLT 375
LE N++ TG+ L GL LK LNL + I+D G+ L + G
Sbjct: 286 TLELGGCCNITNTGL----LLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNL 341
Query: 376 HLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 428
L+ G R++D ++ + +L+S L C +TD+G+KH+ + L LNL
Sbjct: 342 QLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 400
Query: 429 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 482
N++D + L G +G+ SL+VS +I+ L H+ + L LRSL+L C++T
Sbjct: 401 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 457
>gi|66807643|ref|XP_637544.1| hypothetical protein DDB_G0286583 [Dictyostelium discoideum AX4]
gi|60465980|gb|EAL64047.1| hypothetical protein DDB_G0286583 [Dictyostelium discoideum AX4]
Length = 722
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 119/388 (30%), Positives = 191/388 (49%), Gaps = 46/388 (11%)
Query: 47 KWMDVIASQGSSLLSVDLSG--SDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGGLEHLR 103
K MD I + G+ + S+DLS + V + L++ K + L ++ F C ++D GL+ R
Sbjct: 309 KKMDQIVASGARIYSLDLSHQFAVVNNDFLLNCFKYMAELSNVYFRNCENLNDIGLQIFR 368
Query: 104 GLS---NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER--CTRIHGGLVNLKGLMKLE 158
+ NL +L R +N IT G++ GL+NL +L L CT I GL L L+KL+
Sbjct: 369 QPNFEKNLKTLDLR-DNRITDVGIRNLKGLLNLEELYLGSTGCTDI--GLALLCNLLKLK 425
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVT 217
+L++ CN ITDS M + T LK L +S ++VTD GI + L L L + C +T
Sbjct: 426 TLDVSKCN-ITDSSMDIICRFTELKFLYLSGTQVTDKGINTISKLPNLIQLYVSNCLRIT 484
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
L L+ LG +LK+L++ +I + L+
Sbjct: 485 NQSLFFLAYLGK-----------------------TLKLLDIFQTKIGLNGFIQLRMFKQ 521
Query: 278 LESLNLD-SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN---LSF 333
L+ L L I D + +L L NL+ L+LSD + + LS LTNL+S+ LS
Sbjct: 522 LQFLVLPGRDSINDATIGHLNSLSNLRKLDLSDYR----NISDLSPLTNLQSLTELLLSN 577
Query: 334 TGISDGS-LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
T ISD S + + + SL+ L+L+ ++T G++ L +L + +I YL
Sbjct: 578 TKISDNSIINSIKTMDSLEVLSLNKTEVTTEGVSQLVNLNLTSLSLS-STKIDGKSLYYL 636
Query: 393 RNFKNLRSLEICGGGLTDAGVKHIKDLS 420
K+L+ L+I +TD + ++K ++
Sbjct: 637 GQMKSLQKLDISFNDITDNSMDYLKPIA 664
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 95/326 (29%), Positives = 162/326 (49%), Gaps = 21/326 (6%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK+L + +++TD GI LKGL L L L T L L L L L++++C +
Sbjct: 375 NLKTLDLRDNRITDVGIRNLKGLLNLEELYLGSTGCTDIGLALLCNLLKLKTLDVSKCNI 434
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 299
+D + + LK L L ++TD+ + + L NL L + +C I ++ L L L
Sbjct: 435 TDSSMDIICRFTELKFLYLSGTQVTDKGINTISKLPNLIQLYVSNCLRITNQSLFFLAYL 494
Query: 300 -CNLKCLELSDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNL-D 356
LK L++ T++G +G L L+ + L I+D ++ L LS+L+ L+L D
Sbjct: 495 GKTLKLLDIFQTKIGLNGFIQLRMFKQLQFLVLPGRDSINDATIGHLNSLSNLRKLDLSD 554
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
R I+D L+ LT+L LT L L +I+D+ + + + K + SLE+ T+ + +
Sbjct: 555 YRNISD--LSPLTNLQSLTELLLSNTKISDN--SIINSIKTMDSLEVLSLNKTEVTTEGV 610
Query: 417 KDLSSLTLLNLSQNCNLTD-KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN----- 470
L +L L +LS + D K+L + + L L++S + IT + +LKP+ +
Sbjct: 611 SQLVNLNLTSLSLSSTKIDGKSLYYLGQMKSLQKLDISFNDITDNSMDYLKPIADTLSHI 670
Query: 471 -------LRSLTLESCKVTANDIKRL 489
RSL + + K+ +K +
Sbjct: 671 DLRGTDTFRSLHMFNEKIVRPPVKNI 696
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 86/340 (25%), Positives = 147/340 (43%), Gaps = 72/340 (21%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+Q+L L + +T +D + A G+ Y S D +F+ + + +LN
Sbjct: 293 IQRLIELMVSSNRLTRKKMDQIVASGARIY--------SLDLSHQFAVVNNDFLLN---- 340
Query: 263 EITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
C ++ L+N+ N ++ IG + NLK L+L D ++ G+R+L
Sbjct: 341 -----CFKYMAELSNVYFRNCENLNDIGLQIFRQPNFEKNLKTLDLRDNRITDVGIRNLK 395
Query: 322 GLTNLESINLSFTG------------------------ISDGSLRKLAGLSSLKSLNLDA 357
GL NLE + L TG I+D S+ + + LK L L
Sbjct: 396 GLLNLEELYLGSTGCTDIGLALLCNLLKLKTLDVSKCNITDSSMDIICRFTELKFLYLSG 455
Query: 358 RQITDTGLAALTSLTGLTH--------------------------LDLFGARITDSGAAY 391
Q+TD G+ ++ L L LD+F +I +G
Sbjct: 456 TQVTDKGINTISKLPNLIQLYVSNCLRITNQSLFFLAYLGKTLKLLDIFQTKIGLNGFIQ 515
Query: 392 LRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
LR FK L+ L + G + DA + H+ LS+L L+LS N++D L ++ L L L
Sbjct: 516 LRMFKQLQFLVLPGRDSINDATIGHLNSLSNLRKLDLSDYRNISD--LSPLTNLQSLTEL 573
Query: 451 NVSNSRIT-SAGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
+SN++I+ ++ + +K + +L L+L +VT + +L
Sbjct: 574 LLSNTKISDNSIINSIKTMDSLEVLSLNKTEVTTEGVSQL 613
>gi|345310405|ref|XP_001520129.2| PREDICTED: insulin-like growth factor-binding protein complex acid
labile subunit-like [Ornithorhynchus anatinus]
Length = 604
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 109/391 (27%), Positives = 168/391 (42%), Gaps = 11/391 (2%)
Query: 101 HLRGLS--------NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
LRGL+ NL SLS N +G AFAGL L +L+L T +
Sbjct: 130 QLRGLAPGTFLHTPNLASLSLANNRLGQLEG-AAFAGLCQLGELNLGWNTLAVLPDAVFR 188
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
GL L L + N + +GL L+ L +S + + GL +L L L
Sbjct: 189 GLPHLRELVLA-GNRLAYLQPPLFAGLGELQELDLSTNSLRSVKAHVFAGLPRLQKLFLR 247
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
G ++A + L +L +L+L+ +L+ + F + SL VL L N IT
Sbjct: 248 GNQLSAVAPRAFLGLRALRWLDLSHNRLAVLFEDTFLGLPSLHVLRLSANVITSLRPQAF 307
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
+ L +LE L L +G GL L+ L L+D + G +GL L +NLS
Sbjct: 308 RDLPHLEELQLAHNRLGALAAGAFEGLARLEVLALNDNHIREIGPGAFAGLARLAVVNLS 367
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
++ + GL++L SL+L+ + A L L L L IT L
Sbjct: 368 GNCLAALPAQTFRGLAALHSLHLERACLGRVPAGAFAGLVALRRLSLGHNGITAIEEQGL 427
Query: 393 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
+ L L++ G LT + +DL+ L L L+ N L D E + L L L++
Sbjct: 428 HDLTGLLELDLTGNRLTHLPTRAFRDLARLEYLLLAGN-QLADLAPEALLPLRRLSWLDL 486
Query: 453 SNSRITSAGLRHLKPLKNLRSLTLESCKVTA 483
+++R+ + PL +LR L+L + + A
Sbjct: 487 AHNRLGAVAAGLFAPLASLRFLSLRNNSLRA 517
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 76/321 (23%), Positives = 111/321 (34%), Gaps = 34/321 (10%)
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
C C D D + L + CS S Q L L+G +TA +
Sbjct: 41 CACSYDDDYG--------EELSVFCSARNLSSPPEGVPCQARALW-LDGNNLTALPAAAF 91
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
L L +LNL +L + F + L L+L N++ NL SL+L
Sbjct: 92 GNLSGLDFLNLQGSRLGQLEAQAFRGLARLAHLHLERNQLRGLAPGTFLHTPNLASLSLA 151
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGS------SGLRHL------------------ 320
+ +G GLC L L L + GL HL
Sbjct: 152 NNRLGQLEGAAFAGLCQLGELNLGWNTLAVLPDAVFRGLPHLRELVLAGNRLAYLQPPLF 211
Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
+GL L+ ++LS + AGL L+ L L Q++ A L L LDL
Sbjct: 212 AGLGELQELDLSTNSLRSVKAHVFAGLPRLQKLFLRGNQLSAVAPRAFLGLRALRWLDLS 271
Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
R+ +L L + +T + +DL L L L+ N L
Sbjct: 272 HNRLAVLFEDTFLGLPSLHVLRLSANVITSLRPQAFRDLPHLEELQLAHN-RLGALAAGA 330
Query: 441 ISGLTGLVSLNVSNSRITSAG 461
GL L L ++++ I G
Sbjct: 331 FEGLARLEVLALNDNHIREIG 351
>gi|421888174|ref|ZP_16319282.1| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
solanacearum K60-1]
gi|378966463|emb|CCF96030.1| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
solanacearum K60-1]
Length = 468
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 112/444 (25%), Positives = 198/444 (44%), Gaps = 20/444 (4%)
Query: 40 QYPGVNDKWMDVIASQGSSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLD-FNFCIQISDG 97
+ P + + + ++ + + D+ VT+ +GL K N +L+ + +D
Sbjct: 8 RSPPLTVQRLRAVSKSVKAAVEADIRQLVVTNRAGLAGAKRTGNYPALEKLTLAVPFTDA 67
Query: 98 GLEHLRGLSNLTSLSFRR-NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 156
L+ L L L R ITA G+ A + LV+L+L +G + L G +
Sbjct: 68 DLKGL--PPTLKELDLSRCRGGITAAGI-AHLNRLPLVRLNL------NGNRIGLAGAQR 118
Query: 157 LE------SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
L +L++ C I + + L+ L +L +S +++ G+ L + LT L+
Sbjct: 119 LANHPTLTALDVGRCR-IGPEEARELAASARLTTLNVSRNRIGGEGVRALADCKTLTSLD 177
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
+ + A L A L LN+NR ++ G + +L L++G N I DE +
Sbjct: 178 VSENGLGDAEAQRLGASERLTTLNVNRNRIDVPGARALAACKTLTSLDIGGNSIGDEGVD 237
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
L L +LN++ G+G G+ L L L + +G G L+ +L +++
Sbjct: 238 ALVANAQLTTLNVERAGVGAHGVQALADCKTLTSLRIDSNNIGDEGANTLAASISLTTLH 297
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
GI + LA + L +LNL + D G AL + T L L + ++D+GA
Sbjct: 298 SEGNGIGLAGAKALAANTMLTTLNLGHNSVGDAGAQALFANTTLVWLSVRRNGLSDAGAI 357
Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
L + L +L+I + DAG + + +LT LN+S N + + ++ L SL
Sbjct: 358 RLAASRTLTTLDIGDNAIKDAGARALAANRTLTTLNVSSN-EIGNAGARALAANARLKSL 416
Query: 451 NVSNSRITSAGLRHLKPLKNLRSL 474
++ N+R+ G+R L + L SL
Sbjct: 417 DLRNNRMLEGGVRALLANRTLSSL 440
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 94/373 (25%), Positives = 163/373 (43%), Gaps = 27/373 (7%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L+ ++L+G+ + +G L + L +LD C +I L + LT+L+ RN
Sbjct: 101 LVRLNLNGNRIGLAGAQRLANHPTLTALDVGRC-RIGPEEARELAASARLTTLNVSRNR- 158
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I +G++A A L LD+ N + D++ + L
Sbjct: 159 IGGEGVRALADCKTLTSLDVSE-------------------------NGLGDAEAQRLGA 193
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L +L ++ +++ G L + LT L++ G + +D+L A L LN+ R
Sbjct: 194 SERLTTLNVNRNRIDVPGARALAACKTLTSLDIGGNSIGDEGVDALVANAQLTTLNVERA 253
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ G + + +L L + N I DE L +L +L+ + GIG G L
Sbjct: 254 GVGAHGVQALADCKTLTSLRIDSNNIGDEGANTLAASISLTTLHSEGNGIGLAGAKALAA 313
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L L L VG +G + L T L +++ G+SD +LA +L +L++
Sbjct: 314 NTMLTTLNLGHNSVGDAGAQALFANTTLVWLSVRRNGLSDAGAIRLAASRTLTTLDIGDN 373
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
I D G AL + LT L++ I ++GA L L+SL++ + + GV+ +
Sbjct: 374 AIKDAGARALAANRTLTTLNVSSNEIGNAGARALAANARLKSLDLRNNRMLEGGVRALLA 433
Query: 419 LSSLTLLNLSQNC 431
+L+ L +S NC
Sbjct: 434 NRTLSSLGVSFNC 446
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 128/301 (42%), Gaps = 27/301 (8%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L ++++S + + G+ L DC L SLD + + D + L LT+L+ RN
Sbjct: 147 ARLTTLNVSRNRIGGEGVRALADCKTLTSLDVSEN-GLGDAEAQRLGASERLTTLNVNRN 205
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
I G +A A L LD+ + G+ L +L +LN++ + ++ L
Sbjct: 206 R-IDVPGARALAACKTLTSLDIGGNSIGDEGVDALVANAQLTTLNVERAG-VGAHGVQAL 263
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA------------------ 218
+ L SL+I + + D G L LT L+ EG +
Sbjct: 264 ADCKTLTSLRIDSNNIGDEGANTLAASISLTTLHSEGNGIGLAGAKALAANTMLTTLNLG 323
Query: 219 ------ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
A +L A +L +L++ R LSD G + + +L L++G N I D L
Sbjct: 324 HNSVGDAGAQALFANTTLVWLSVRRNGLSDAGAIRLAASRTLTTLDIGDNAIKDAGARAL 383
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
L +LN+ S IG+ G L LK L+L + ++ G+R L L S+ +S
Sbjct: 384 AANRTLTTLNVSSNEIGNAGARALAANARLKSLDLRNNRMLEGGVRALLANRTLSSLGVS 443
Query: 333 F 333
F
Sbjct: 444 F 444
>gi|290989200|ref|XP_002677229.1| predicted protein [Naegleria gruberi]
gi|284090835|gb|EFC44485.1| predicted protein [Naegleria gruberi]
Length = 308
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 118/259 (45%), Gaps = 24/259 (9%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D K + L +L IS + + Y+ L KL LN+ G +T LS L L
Sbjct: 57 DCKIFEWMKQLTNLSISYNNMNVENTKYIGQLDKLINLNINGNAITHEGAKYLSELEQLN 116
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
L+++ C++ +G + S++ L LN+G N I G E
Sbjct: 117 TLHIDNCEIGVEGAKYLSEMKHLTNLNIGSNRI------------------------GVE 152
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
G+ ++ GL L L++S+ ++G G ++L + L ++++S + + ++ + L
Sbjct: 153 GVKHIIGLSKLTFLDISNNKIGEEGAKYLREMRQLNNLDVSTNALRQQGIEYISEMKQLT 212
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
SL++ I G ++ +T LT L++ I G ++ N K L+ L I G + +
Sbjct: 213 SLSIAVNLIGVEGAKHISEMTQLTKLNMNCCNIGVEGVKHIINMKQLKHLIISGNNIGNK 272
Query: 412 GVKHIKDLSSLTLLNLSQN 430
G + I DL LT LN+ N
Sbjct: 273 GCELILDLEQLTFLNIENN 291
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 126/265 (47%), Gaps = 3/265 (1%)
Query: 203 LQKLTLLNLEGCPVTAACLDS--LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
LQ + L +E + D + L L+++ ++ + + ++ L LN+
Sbjct: 38 LQNIATLKVEKRRSDSVVFDCKIFEWMKQLTNLSISYNNMNVENTKYIGQLDKLINLNIN 97
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
N IT E +L L L +L++D+C IG EG L+ + +L L + ++G G++H+
Sbjct: 98 GNAITHEGAKYLSELEQLNTLHIDNCEIGVEGAKYLSEMKHLTNLNIGSNRIGVEGVKHI 157
Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
GL+ L +++S I + + L + L +L++ + G+ ++ + LT L +
Sbjct: 158 IGLSKLTFLDISNNKIGEEGAKYLREMRQLNNLDVSTNALRQQGIEYISEMKQLTSLSIA 217
Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
I GA ++ L L + + GVKHI ++ L L +S N N+ +K EL
Sbjct: 218 VNLIGVEGAKHISEMTQLTKLNMNCCNIGVEGVKHIINMKQLKHLIISGN-NIGNKGCEL 276
Query: 441 ISGLTGLVSLNVSNSRITSAGLRHL 465
I L L LN+ N+ I G+ ++
Sbjct: 277 ILDLEQLTFLNIENNNIDVEGIAYI 301
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 112/232 (48%), Gaps = 25/232 (10%)
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
C+ F + L L++ +N + E ++ L L +LN++ I EG L+ L L
Sbjct: 58 CKIFEWMKQLTNLSISYNNMNVENTKYIGQLDKLINLNINGNAITHEGAKYLSELEQLNT 117
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
L + + ++G G ++LS + +L +LN+ + +I G
Sbjct: 118 LHIDNCEIGVEGAKYLSEMKHL------------------------TNLNIGSNRIGVEG 153
Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424
+ + L+ LT LD+ +I + GA YLR + L +L++ L G+++I ++ LT
Sbjct: 154 VKHIIGLSKLTFLDISNNKIGEEGAKYLREMRQLNNLDVSTNALRQQGIEYISEMKQLTS 213
Query: 425 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
L+++ N + + + IS +T L LN++ I G++H+ +K L+ L +
Sbjct: 214 LSIAVNL-IGVEGAKHISEMTQLTKLNMNCCNIGVEGVKHIINMKQLKHLII 264
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 113/266 (42%), Gaps = 26/266 (9%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
+ LT+LS NN + + K L L+ L++ H G L L +L +L+I
Sbjct: 64 MKQLTNLSISYNN-MNVENTKYIGQLDKLINLNINGNAITHEGAKYLSELEQLNTLHIDN 122
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
C I K LS + +L +L I +++ G+ ++ GL KLT L++ + L
Sbjct: 123 CE-IGVEGAKYLSEMKHLTNLNIGSNRIGVEGVKHIIGLSKLTFLDISNNKIGEEGAKYL 181
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
+ L L+++ L G E S++ L L++ N I E H+ +T L LN++
Sbjct: 182 REMRQLNNLDVSTNALRQQGIEYISEMKQLTSLSIAVNLIGVEGAKHISEMTQLTKLNMN 241
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
C IG E G++H+ + L+ + +S I + +
Sbjct: 242 CCNIGVE------------------------GVKHIINMKQLKHLIISGNNIGNKGCELI 277
Query: 345 AGLSSLKSLNLDARQITDTGLAALTS 370
L L LN++ I G+A + S
Sbjct: 278 LDLEQLTFLNIENNNIDVEGIAYIAS 303
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 6/171 (3%)
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL---AALTSLTGLTHLDLFGARITDS 387
LS T D S + L ++ +L ++ R+ +D+ + + LT+L + +
Sbjct: 22 LSLTRNHDHSKMQGQFLQNIATLKVEKRR-SDSVVFDCKIFEWMKQLTNLSISYNNMNVE 80
Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
Y+ L +L I G +T G K++ +L L L++ NC + + + +S + L
Sbjct: 81 NTKYIGQLDKLINLNINGNAITHEGAKYLSELEQLNTLHID-NCEIGVEGAKYLSEMKHL 139
Query: 448 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNL 497
+LN+ ++RI G++H+ L L L + + K+ K L+ R L NL
Sbjct: 140 TNLNIGSNRIGVEGVKHIIGLSKLTFLDISNNKIGEEGAKYLREMRQLNNL 190
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 91/213 (42%), Gaps = 25/213 (11%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI---------------------- 92
Q L++++++G+ +T G +L + L +L + C
Sbjct: 87 QLDKLINLNINGNAITHEGAKYLSELEQLNTLHIDNCEIGVEGAKYLSEMKHLTNLNIGS 146
Query: 93 -QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
+I G++H+ GLS LT L NN I +G K + L LD+ G+ +
Sbjct: 147 NRIGVEGVKHIIGLSKLTFLDI-SNNKIGEEGAKYLREMRQLNNLDVSTNALRQQGIEYI 205
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
+ +L SL+I N I K +S +T L L ++C + G+ ++ +++L L +
Sbjct: 206 SEMKQLTSLSIA-VNLIGVEGAKHISEMTQLTKLNMNCCNIGVEGVKHIINMKQLKHLII 264
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
G + + + L L +LN+ + +G
Sbjct: 265 SGNNIGNKGCELILDLEQLTFLNIENNNIDVEG 297
>gi|432862145|ref|XP_004069745.1| PREDICTED: F-box/LRR-repeat protein 14-like [Oryzias latipes]
Length = 403
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 110/337 (32%), Positives = 169/337 (50%), Gaps = 36/337 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFA-----GLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ + QGM G NL L G ++ + L
Sbjct: 71 RGIKKVQILSLRRSLSYVIQGMPHIESLNLCGCFNLTDNGL--------GHAFVQDIPSL 122
Query: 158 ESLNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ L NL++L + CS +T++G+ + GL KL LNL C
Sbjct: 123 RLLNLSLCKQITDSSLGRIAQYLKNLEALDLGGCSNITNTGLLLIAWGLHKLKSLNLRSC 182
Query: 215 -PVTAACLDSLSALG--------SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
V+ + +S + SL L L CQ L+D + SK + LKVLNL F
Sbjct: 183 RHVSDVGIGHISGMTRSAAEGCLSLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCG 242
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
I+D ++HL + +L SLNL SC I D G+++L G L L++S ++G L +
Sbjct: 243 GISDAGMIHLSHMAHLCSLNLRSCDNISDTGIMHLAMGSLQLSGLDVSFCDKIGDQSLAY 302
Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLT 375
++ GL L+S++L ISD + R + + LK+LN+ +ITD GL + LT LT
Sbjct: 303 VAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLT 362
Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
+DL+G +IT G + L+ L + +TD+
Sbjct: 363 GIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTDS 399
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 100/307 (32%), Positives = 165/307 (53%), Gaps = 26/307 (8%)
Query: 82 NLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDL 138
+++SL+ C ++D GL H ++ + +L L+ IT + A + NL LDL
Sbjct: 94 HIESLNLCGCFNLTDNGLGHAFVQDIPSLRLLNLSLCKQITDSSLGRIAQYLKNLEALDL 153
Query: 139 ERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLKSLQIS 188
C+ I G L+ GL KL+SLN++ C ++D + +SG+T +L+ L +
Sbjct: 154 GGCSNITNTGLLLIAWGLHKLKSLNLRSCRHVSDVGIGHISGMTRSAAEGCLSLEKLTLQ 213
Query: 189 -CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
C K+TD + ++ KGL KL +LNL C ++ A + LS + L LNL C +SD G
Sbjct: 214 DCQKLTDLSLKHVSKGLNKLKVLNLSFCGGISDAGMIHLSHMAHLCSLNLRSCDNISDTG 273
Query: 245 CEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT-GL 299
+ +GSL++ L++ F ++I D+ L ++ +GL L+SL+L SC I D+G+ + +
Sbjct: 274 IMHLA-MGSLQLSGLDVSFCDKIGDQSLAYVAQGLYQLKSLSLCSCHISDDGINRMVRQM 332
Query: 300 CNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLD 356
LK L + ++ GL ++ LT L I+L T I+ L ++ L LK LNL
Sbjct: 333 HELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLG 392
Query: 357 ARQITDT 363
Q+TD+
Sbjct: 393 LWQMTDS 399
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 105/336 (31%), Positives = 172/336 (51%), Gaps = 44/336 (13%)
Query: 176 LSGLTNLKSLQI-SCSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ G+ +++SL + C +TD+G+ A+++ + L LLNL C S+LG +
Sbjct: 89 IQGMPHIESLNLCGCFNLTDNGLGHAFVQDIPSLRLLNLSLCKQITD-----SSLGRIAQ 143
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDE 291
N L GC + G L + GL L+SLNL SC + D
Sbjct: 144 YLKNLEALDLGGCSNITNTGLLLIA---------------WGLHKLKSLNLRSCRHVSDV 188
Query: 292 GLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGS 340
G+ +++G+ +L+ L L D Q + L+H+S GL L+ +NLSF G ISD
Sbjct: 189 GIGHISGMTRSAAEGCLSLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCGGISDAG 248
Query: 341 LRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNF 395
+ L+ ++ L SLNL + I+DTG+ A+ SL L+ LD+ F +I D AY+ +
Sbjct: 249 MIHLSHMAHLCSLNLRSCDNISDTGIMHLAMGSLQ-LSGLDVSFCDKIGDQSLAYVAQGL 307
Query: 396 KNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVS 453
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ LT L +++
Sbjct: 308 YQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLY 367
Query: 454 N-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
++IT GL + L L+ L L ++T ++ R
Sbjct: 368 GCTKITKRGLERITQLPCLKVLNLGLWQMTDSERVR 403
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 104/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ K + L+ L+ +FC ISD G+ HL +++L SL+ R + I+ G+
Sbjct: 218 LTDLSLKHVSKGLNKLKVLNLSFCGGISDAGMIHLSHMAHLCSLNLRSCDNISDTGIMHL 277
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C +I + +GL +L+SL++ C+ D + + + LK+
Sbjct: 278 AMGSLQLSGLDVSFCDKIGDQSLAYVAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKT 337
Query: 185 LQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + L +LT ++L GC +++
Sbjct: 338 LNIGQCVRITDKGLELIADHLTQLTGIDLYGCT-----------------------KITK 374
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 375 RGLERITQLPCLKVLNLGLWQMTD 398
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 127/245 (51%), Gaps = 32/245 (13%)
Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGL--CNLK-CLELSDTQVGSSGLRHLSG 322
++G+ ++ESLNL C G+G + ++ L NL C +++D+ +G R
Sbjct: 89 IQGMPHIESLNLCGCFNLTDNGLGHAFVQDIPSLRLLNLSLCKQITDSSLG----RIAQY 144
Query: 323 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 372
L NLE+++L + I++ L +A GL LKSLNL + R ++D G+ ++ +T
Sbjct: 145 LKNLEALDLGGCSNITNTGLLLIAWGLHKLKSLNLRSCRHVSDVGIGHISGMTRSAAEGC 204
Query: 373 -GLTHLDLFG-ARITDSGAAYLR---NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
L L L ++TD ++ N + +L CGG ++DAG+ H+ ++ L LNL
Sbjct: 205 LSLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCGG-ISDAGMIHLSHMAHLCSLNL 263
Query: 428 SQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 484
N++D + L G L L+VS +I L ++ + L L+SL+L SC ++ +
Sbjct: 264 RSCDNISDTGIMHLAMGSLQLSGLDVSFCDKIGDQSLAYVAQGLYQLKSLSLCSCHISDD 323
Query: 485 DIKRL 489
I R+
Sbjct: 324 GINRM 328
>gi|195346821|ref|XP_002039953.1| GM15616 [Drosophila sechellia]
gi|194135302|gb|EDW56818.1| GM15616 [Drosophila sechellia]
Length = 538
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 121/374 (32%), Positives = 188/374 (50%), Gaps = 68/374 (18%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 202 SPSLFNCLV-KRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 243
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAI 119
+V D L H D NL++LD + C QI+D L +HLR NL +L I
Sbjct: 244 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLR---NLETLELGGCCNI 300
Query: 120 TAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCIT 169
T G+ A GL L L+L C I G+ +L G ++LE L ++ C ++
Sbjct: 301 TNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLS 360
Query: 170 DSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
D + ++ GLT+LKS+ +S C VTDSG+ +L + KL LNL C D++S +
Sbjct: 361 DEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDI 413
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDS 285
G + L++ G S I SL V F ++I+D+ L H+ +GL L SL+L+
Sbjct: 414 GMAY--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQ 458
Query: 286 CGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSL 341
C I D G++ + L L+ L + +++ GL+ L+ LTNL++I+L T +S +
Sbjct: 459 CQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGI 518
Query: 342 RKLAGLSSLKSLNL 355
+ L L+ LNL
Sbjct: 519 DIIMKLPKLQKLNL 532
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 110/352 (31%), Positives = 172/352 (48%), Gaps = 58/352 (16%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ G+ A +G N+ ++L + L L
Sbjct: 212 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLGHAFSV--------DLPNL 263
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
++L++ C ITD+ + ++ L NL++L++ C +T++G+ + GL+KL LNL C
Sbjct: 264 KTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSC 323
Query: 215 PVTA-------ACLDSLSALGSLF--YLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A +A G+L YL L CQ LSD+ ++ + SLK +NL F
Sbjct: 324 WHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 383
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
+TD L HL + LE LNL SC I D G+ LT G SG
Sbjct: 384 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTE--------------GGSG----- 424
Query: 322 GLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLD 378
+ S+++SF ISD +L +A GL L+SL+L+ QITD G+ + +L L +L+
Sbjct: 425 ----INSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLN 480
Query: 379 LFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 427
+ +RITD G L + NL+++++ G L+ G+ I L L LNL
Sbjct: 481 IGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 532
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 106/339 (31%), Positives = 162/339 (47%), Gaps = 53/339 (15%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
G+ L SLN+ C + D ++ L NLK+L +S C ++TD+ + + + L+ L
Sbjct: 232 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLET 291
Query: 209 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L GC L L L +LNL C +SD G IG L GF+ T
Sbjct: 292 LELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQG------IGHLA----GFSRET 341
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
E +L L+ G+ D C LSD +G GLT+
Sbjct: 342 AE-----------GNLQLEYLGLQD-------------CQRLSDEALGHIA----QGLTS 373
Query: 326 LESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FG 381
L+SINLSF ++D L+ LA + L+ LNL + I+D G+A LT +G+ LD+ F
Sbjct: 374 LKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFC 433
Query: 382 ARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE 439
+I+D ++ + LRSL + +TD G+ I K L L LN+ Q +TDK L+
Sbjct: 434 DKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLNIGQCSRITDKGLQ 493
Query: 440 -LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 476
L LT L ++++ ++++S G+ + L L+ L L
Sbjct: 494 TLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 532
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 119/244 (48%), Gaps = 34/244 (13%)
Query: 274 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 324
G+ L SLNL C +G V+L L L C +++DT +G +HL L
Sbjct: 232 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLE 290
Query: 325 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-----GLT 375
LE N++ TG+ L GL LK LNL + I+D G+ L + G
Sbjct: 291 TLELGGCCNITNTGL----LLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNL 346
Query: 376 HLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 428
L+ G R++D ++ + +L+S L C +TD+G+KH+ + L LNL
Sbjct: 347 QLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 405
Query: 429 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAND 485
N++D + L G +G+ SL+VS +I+ L H+ + L LRSL+L C++T +
Sbjct: 406 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHG 465
Query: 486 IKRL 489
+ ++
Sbjct: 466 MLKI 469
>gi|326201424|ref|ZP_08191295.1| Dockerin type 1 [Clostridium papyrosolvens DSM 2782]
gi|325988024|gb|EGD48849.1| Dockerin type 1 [Clostridium papyrosolvens DSM 2782]
Length = 1098
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 144/507 (28%), Positives = 232/507 (45%), Gaps = 69/507 (13%)
Query: 10 IFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDV 69
I +L + + F D L+ + G +N D++ + SS+ S+ ++
Sbjct: 18 ILTQLFVHNAFADSDIVTFADPNLEAVVRG---AINKPTGDILKTDVSSITSIIAENKNI 74
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
+ L ++ +NL L + +ISD + L GL++L L+ ++N + A AG
Sbjct: 75 NN--LTGIECLTNLTMLSLSKN-KISD--VTPLAGLTSLKYLALYQSNI---SNINALAG 126
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
LINL LDL + + LK + KL L + W N +D+ LS LTNL+ LQ+ C
Sbjct: 127 LINLEYLDLGMNSV--SDISALKNMTKLTYLELSWNNI---TDISALSKLTNLQYLQLGC 181
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+++ D I+ + L KL L+L ++ + LS L +L YL+LN +S+ +
Sbjct: 182 NRIVD--ISPISNLTKLKTLHLFYNRISD--ISGLSGLKTLTYLHLNSNNVSN--INPLN 235
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELS 308
+ L L+LGFN+ITD + L LT + L+L I + L NLT L +LK LE +
Sbjct: 236 GLTMLSYLDLGFNKITD--ISALNKLTKITDLDLSYNKITNINVLSNLTSLNDLK-LENN 292
Query: 309 DTQVGSSGLRHLSGLT----NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT--D 362
S +S LT NLE I+ ++ +L S ++A QIT D
Sbjct: 293 PINNYSPITGIISKLTKKDFNLEPISFPDADLAKAVCHQLGKNSEDMIYKIEAPQITVLD 352
Query: 363 TGLAALTSLTGLTHL----DLFGA------------------------RITDSGAAYLRN 394
G + SL+G+ L DL+ A +I+D LRN
Sbjct: 353 AGNMEIKSLSGIEQLCNLKDLYLAGNELDNINPISALTSLEALNLEKNQISDLNV--LRN 410
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
NL+ L + ++D + + DLSSL L+LS N K L S L L L++ +
Sbjct: 411 LHNLKYLILRDNKISD--ITPLSDLSSLKTLDLSYNSLTNTKNL---SKLVNLYELHLDD 465
Query: 455 SRITSAGLRHLKPLKNLRSLTLESCKV 481
+ I + L+ + L+ LTL+ ++
Sbjct: 466 NEIND--INGLQNITKLKILTLDKNQI 490
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 109/393 (27%), Positives = 184/393 (46%), Gaps = 43/393 (10%)
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D G+ + D S L+++ +++S + + LS LT+L + + + + + +
Sbjct: 134 DLGMNSVSDISALKNMTKLTYLELSWNNITDISALSKLTNLQYLQ---LGCNRIVDISPI 190
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
NL KL + + + ++ GL L++L N S++ PL+GLT L L + +
Sbjct: 191 SNLTKL--KTLHLFYNRISDISGLSGLKTLTYLHLNSNNVSNINPLNGLTMLSYLDLGFN 248
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
K+TD I+ L L K+T L+L +T ++ LS L S LN +L ++ +S
Sbjct: 249 KITD--ISALNKLTKITDLDLSYNKITN--INVLSNLTS-----LNDLKLENNPINNYSP 299
Query: 251 IGSL------KVLNLGFNEITD----ECLVHLKG------LTNLESLNLDSCGIGDEGLV 294
I + K NL D + + H G + +E+ + G+ +
Sbjct: 300 ITGIISKLTKKDFNLEPISFPDADLAKAVCHQLGKNSEDMIYKIEAPQITVLDAGNMEIK 359
Query: 295 NLTG---LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
+L+G LCNLK L L+ ++ + +S LT+LE++NL ISD L L L +LK
Sbjct: 360 SLSGIEQLCNLKDLYLAGNEL--DNINPISALTSLEALNLEKNQISD--LNVLRNLHNLK 415
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
L L +I+D + L+ L+ L LDL +T++ L NL L + + D
Sbjct: 416 YLILRDNKISD--ITPLSDLSSLKTLDLSYNSLTNTKN--LSKLVNLYELHLDDNEINDI 471
Query: 412 -GVKHIKDLSSLTL-LNLSQNCNLTDKTLELIS 442
G+++I L LTL N Q+ L L+LIS
Sbjct: 472 NGLQNITKLKILTLDKNQIQDVCLLKNKLDLIS 504
>gi|355785801|gb|EHH65984.1| F-box and leucine-rich repeat protein 14 [Macaca fascicularis]
Length = 330
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 113/350 (32%), Positives = 182/350 (52%), Gaps = 50/350 (14%)
Query: 179 LTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
+ N++SL +S C +TD+G+ + + +GSL LNL+
Sbjct: 1 MANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALNLSL 38
Query: 238 C-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEG 292
C Q++D + ++ + L+VL LG + IT+ L+ + GL L+SLNL SC + D G
Sbjct: 39 CKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVG 98
Query: 293 LVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSL 341
+ +L G+ L+ L L D Q + L+H+S GLT L +NLSF G ISD L
Sbjct: 99 IGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGL 158
Query: 342 RKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFK 396
L+ + SL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ +
Sbjct: 159 LHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLD 217
Query: 397 NLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN 454
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++
Sbjct: 218 GLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYG 277
Query: 455 -SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 503
+RIT GL + L L+ L L ++T D ++ D L + R
Sbjct: 278 CTRITKRGLERITQLPCLKVLNLGLWQMT--DSEKEARGDFSPLFTVRTR 325
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 99/311 (31%), Positives = 167/311 (53%), Gaps = 32/311 (10%)
Query: 81 SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-LVKLD 137
+N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L L+
Sbjct: 2 ANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLE 61
Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQI 187
L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+ L +
Sbjct: 62 LGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTL 121
Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C +SD
Sbjct: 122 QDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDT 181
Query: 244 GCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL----VN 295
G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 182 GIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQ 240
Query: 296 LTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L LK
Sbjct: 241 MHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYG--CTRITKRGLERITQLPCLKV 297
Query: 353 LNLDARQITDT 363
LNL Q+TD+
Sbjct: 298 LNLGLWQMTDS 308
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 98/303 (32%), Positives = 155/303 (51%), Gaps = 32/303 (10%)
Query: 154 LMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGLQKL 206
+ +ESLN+ C +TD+ + + + +L++L +S C ++TDS + YLKGL+
Sbjct: 1 MANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLE-- 58
Query: 207 TLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKI------GSLKVL 257
+L L GC L L L LNL C+ LSD G + + G L +
Sbjct: 59 -VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 117
Query: 258 NLGFNE---ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-SDTQ 311
L + +TD L H+ +GLT L LNL C GI D GL++L+ + +L+ L L S
Sbjct: 118 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 177
Query: 312 VGSSGLRHLS-GLTNLESINLSFT-GISDGSLRKLA-GLSSLKSLNLDARQITDTGLAAL 368
+ +G+ HL+ G L +++SF + D SL +A GL LKSL+L + I+D G+ +
Sbjct: 178 ISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRM 237
Query: 369 T-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTL 424
+ GL L++ RITD G + + L +++ G +T G++ I L L +
Sbjct: 238 VRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKV 297
Query: 425 LNL 427
LNL
Sbjct: 298 LNL 300
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 127 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 186
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 187 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 246
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 247 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 283
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 284 RGLERITQLPCLKVLNLGLWQMTD 307
>gi|320168280|gb|EFW45179.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 769
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 110/401 (27%), Positives = 168/401 (41%), Gaps = 7/401 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVN 150
QI+ GLS LT L + N IT AF GL +L +L L + T I
Sbjct: 91 QITGLSANAFAGLSALTLLDLKGNQ-ITTIPENAFTGLASLQQLWLYTNQITSISANA-- 147
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
GL L L + + N + + +GLT L S+Q+ +++T G+ LT L
Sbjct: 148 FAGLSALTQLWM-YSNPLPNITANAFAGLTALNSMQLDRNQLTSIVANAFAGMPALTDLE 206
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L+ +T+ + + L +L YLN+ + ++ F+ + +L L L N IT
Sbjct: 207 LQNNAITSISPSAFAGLTALTYLNMVQNHITGISANSFTGLSALNELYLSQNSITVISSN 266
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
GLT L SL L S I T L L L L + S + L L S+
Sbjct: 267 AFNGLTALSSLYLPSNQITSISANVFTNLPALSSLRLQSNSITSISSNAFTNLPALSSLR 326
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
L I+ S L +L +L+L +IT + A T+L GLT L L+ +IT A
Sbjct: 327 LKSNSITSISSNAFTNLPALSALDLSDNEITVIPVNAFTNLPGLTDLKLYANKITTIFAN 386
Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
L SL++ G +T I L++L L L++N +T+ + LT L L
Sbjct: 387 AFSGLSVLDSLDLSGNLITVIPANAIASLTALNFLYLNEN-QITNIPANAFASLTALTGL 445
Query: 451 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 491
+ +++ S L L L L +T + +
Sbjct: 446 FLQQNQLASIDANAFAGLTALIDLDLREASITVMPVNAFTA 486
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 161/359 (44%), Gaps = 29/359 (8%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-LKGLMKLESL 160
G+ LT L + NNAIT+ AFAGL L L++ + I G N GL L L
Sbjct: 196 FAGMPALTDLELQ-NNAITSISPSAFAGLTALTYLNMVQ-NHITGISANSFTGLSALNEL 253
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+ N IT +GLT L SL + +++T L L+ L L+ +T+
Sbjct: 254 YLSQ-NSITVISSNAFNGLTALSSLYLPSNQITSISANVFTNLPALSSLRLQSNSITSIS 312
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
++ + L +L L L ++ F+ + +L L+L NEIT ++ + TNL
Sbjct: 313 SNAFTNLPALSSLRLKSNSITSISSNAFTNLPALSALDLSDNEIT---VIPVNAFTNLP- 368
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
GL +LK L ++ + SGL+ L+S++LS I+
Sbjct: 369 -----------------GLTDLK---LYANKITTIFANAFSGLSVLDSLDLSGNLITVIP 408
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
+A L++L L L+ QIT+ A SLT LT L L ++ A L
Sbjct: 409 ANAIASLTALNFLYLNENQITNIPANAFASLTALTGLFLQQNQLASIDANAFAGLTALID 468
Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L++ +T V L++LT L LS N +T + + + LT L L++S ++ITS
Sbjct: 469 LDLREASITVMPVNAFTALTALTSLYLSLN-QITTISANVFASLTALNYLDLSANQITS 526
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 112/257 (43%), Gaps = 3/257 (1%)
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
F+ + +L+ L L N+IT GL+ L L+L I TGL +L+
Sbjct: 73 ANAFATLTALESLRLYNNQITGLSANAFAGLSALTLLDLKGNQITTIPENAFTGLASLQQ 132
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
L L Q+ S +GL+ L + + + + + AGL++L S+ LD Q+T
Sbjct: 133 LWLYTNQITSISANAFAGLSALTQLWMYSNPLPNITANAFAGLTALNSMQLDRNQLTSIV 192
Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424
A + LT L+L IT + L L + +T LS+L
Sbjct: 193 ANAFAGMPALTDLELQNNAITSISPSAFAGLTALTYLNMVQNHITGISANSFTGLSALNE 252
Query: 425 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 484
L LSQN ++T + +GLT L SL + +++ITS L L SL L+S +T+
Sbjct: 253 LYLSQN-SITVISSNAFNGLTALSSLYLPSNQITSISANVFTNLPALSSLRLQSNSITSI 311
Query: 485 DIKRLQSRDLPNLVSFR 501
+LP L S R
Sbjct: 312 SSNAF--TNLPALSSLR 326
>gi|442624469|ref|NP_001261138.1| partner of paired, isoform B [Drosophila melanogaster]
gi|440214583|gb|AGB93669.1| partner of paired, isoform B [Drosophila melanogaster]
Length = 562
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 121/374 (32%), Positives = 188/374 (50%), Gaps = 68/374 (18%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 202 SPSLFNCLV-KRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 243
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAI 119
+V D L H D NL++LD + C QI+D L +HLR NL +L I
Sbjct: 244 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLR---NLETLELGGCCNI 300
Query: 120 TAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCIT 169
T G+ A GL L L+L C I G+ +L G ++LE L ++ C ++
Sbjct: 301 TNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLS 360
Query: 170 DSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
D + ++ GLT+LKS+ +S C VTDSG+ +L + KL LNL C D++S +
Sbjct: 361 DEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDI 413
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDS 285
G + L++ G S I SL V F ++I+D+ L H+ +GL L SL+L+
Sbjct: 414 GMAY--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQ 458
Query: 286 CGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSL 341
C I D G++ + L L+ L + +++ GL+ L+ LTNL++I+L T +S +
Sbjct: 459 CQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGI 518
Query: 342 RKLAGLSSLKSLNL 355
+ L L+ LNL
Sbjct: 519 DIIMKLPKLQKLNL 532
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 110/352 (31%), Positives = 172/352 (48%), Gaps = 58/352 (16%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ G+ A +G N+ ++L + L L
Sbjct: 212 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLGHAFSV--------DLPNL 263
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
++L++ C ITD+ + ++ L NL++L++ C +T++G+ + GL+KL LNL C
Sbjct: 264 KTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSC 323
Query: 215 PVTA-------ACLDSLSALGSL--FYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A +A G+L YL L CQ LSD+ ++ + SLK +NL F
Sbjct: 324 WHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 383
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
+TD L HL + LE LNL SC I D G+ LT G SG
Sbjct: 384 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTE--------------GGSG----- 424
Query: 322 GLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLD 378
+ S+++SF ISD +L +A GL L+SL+L+ QITD G+ + +L L +L+
Sbjct: 425 ----INSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLN 480
Query: 379 LFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 427
+ +RITD G L + NL+++++ G L+ G+ I L L LNL
Sbjct: 481 IGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 532
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 106/339 (31%), Positives = 162/339 (47%), Gaps = 53/339 (15%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
G+ L SLN+ C + D ++ L NLK+L +S C ++TD+ + + + L+ L
Sbjct: 232 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLET 291
Query: 209 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L GC L L L +LNL C +SD G IG L GF+ T
Sbjct: 292 LELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQG------IGHLA----GFSRET 341
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
E +L L+ G+ D C LSD +G GLT+
Sbjct: 342 AE-----------GNLQLEYLGLQD-------------CQRLSDEALGHIA----QGLTS 373
Query: 326 LESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FG 381
L+SINLSF ++D L+ LA + L+ LNL + I+D G+A LT +G+ LD+ F
Sbjct: 374 LKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFC 433
Query: 382 ARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE 439
+I+D ++ + LRSL + +TD G+ I K L L LN+ Q +TDK L+
Sbjct: 434 DKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLNIGQCSRITDKGLQ 493
Query: 440 -LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 476
L LT L ++++ ++++S G+ + L L+ L L
Sbjct: 494 TLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 532
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 115/237 (48%), Gaps = 34/237 (14%)
Query: 274 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 324
G+ L SLNL C +G V+L L L C +++DT +G +HL L
Sbjct: 232 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLE 290
Query: 325 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-----GLT 375
LE N++ TG+ L GL LK LNL + I+D G+ L + G
Sbjct: 291 TLELGGCCNITNTGL----LLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNL 346
Query: 376 HLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 428
L+ G R++D ++ + +L+S L C +TD+G+KH+ + L LNL
Sbjct: 347 QLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 405
Query: 429 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 482
N++D + L G +G+ SL+VS +I+ L H+ + L LRSL+L C++T
Sbjct: 406 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 462
>gi|406831321|ref|ZP_11090915.1| hypothetical protein SpalD1_06780 [Schlesneria paludicola DSM
18645]
Length = 785
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 146/276 (52%), Gaps = 22/276 (7%)
Query: 240 LSDDGC---EKFSKIGSLK---VLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEG 292
LS DG E S++ LK +LNL I+D L+ L + LNL+ C + D
Sbjct: 508 LSADGTISSEIVSQLALLKGRLILNLEGARISDAGTAQLRALP-IVGLNLELCSQLTDAT 566
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISD------GSLRKLA 345
+L+GL L L LS T V S+GL ++ L ++ L I+D GS+++L
Sbjct: 567 FSSLSGLKQLVALVLSGTNVTSTGLTQVAENLPLVALELELCDAINDDVCLTLGSMKRLR 626
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
L+ LK + R I+D GL L +LT L L+L+G ++TD+G +L++ K LR L++
Sbjct: 627 WLN-LKKSGFEKRGISDIGLEQLKTLTELEMLNLYGNKVTDAGLIHLQSLKRLRDLDLSL 685
Query: 406 GGLTDAGVKHIKDLSSLTLLNLS-----QNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
L DAG++ + L SL LNL +LTD+ ++ L L LN++ S++T +
Sbjct: 686 LNLNDAGIESLSPLISLERLNLMFTEGFAGPSLTDRATRSLTPLQQLTWLNLNGSKLTDS 745
Query: 461 GLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 496
GL L+ L LR+L + KVT + ++ + R LP
Sbjct: 746 GLEQLQELNQLRTLHVVRTKVTESGREKFR-RALPE 780
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 122/263 (46%), Gaps = 27/263 (10%)
Query: 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
L ++L G+ ++D+G L+ + L+ C Q++D L GL L +L N +
Sbjct: 529 LILNLEGARISDAGTAQLRALP-IVGLNLELCSQLTDATFSSLSGLKQLVALVLSGTN-V 586
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
T+ G+ A + LV L+LE C I+ + C+T MK L L
Sbjct: 587 TSTGLTQVAENLPLVALELELCDAINDDV------------------CLTLGSMKRLRWL 628
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
NLK ++D G+ LK L +L +LNL G VT A L L +L L L+L+
Sbjct: 629 -NLKKSGFEKRGISDIGLEQLKTLTELEMLNLYGNKVTDAGLIHLQSLKRLRDLDLSLLN 687
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNE------ITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
L+D G E S + SL+ LNL F E +TD L L L LNL+ + D GL
Sbjct: 688 LNDAGIESLSPLISLERLNLMFTEGFAGPSLTDRATRSLTPLQQLTWLNLNGSKLTDSGL 747
Query: 294 VNLTGLCNLKCLELSDTQVGSSG 316
L L L+ L + T+V SG
Sbjct: 748 EQLQELNQLRTLHVVRTKVTESG 770
>gi|302754944|ref|XP_002960896.1| hypothetical protein SELMODRAFT_75506 [Selaginella moellendorffii]
gi|300171835|gb|EFJ38435.1| hypothetical protein SELMODRAFT_75506 [Selaginella moellendorffii]
Length = 637
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 144/482 (29%), Positives = 214/482 (44%), Gaps = 92/482 (19%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLS--NLTSLSFRRNNAITAQGMKAFA---------- 128
+ ++SLD + CI+I+D L + L+ L SL R T G+ A A
Sbjct: 65 TGIESLDLSSCIKITDEDLALVGELAGTRLRSLGLARMGGFTVAGIVALARDCSALVELD 124
Query: 129 ----------------GLINLVKLDLERCTRIH-GGLVNLK-GLMKLESLNIKWCNCITD 170
L NL KLDL C I GL L G KL+ + +K C I+D
Sbjct: 125 LRCCNSLGDLELAAVCQLGNLRKLDLTGCYMISDAGLGCLAAGCKKLQVVVLKGCVGISD 184
Query: 171 SDMKPL-SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALG 228
+ + L S L ++ +S +++TD G+ L L L +LNL C V A L S
Sbjct: 185 AGLCFLASNCKELTTIDVSYTEITDDGVRCLSNLPSLRVLNLAACSNVGDAGLTRTST-- 242
Query: 229 SLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-------NEITDECLVHLKGLTNLES 280
SL L+L+ C+ +++ G SK SL+ L LGF ++IT + L + LT +++
Sbjct: 243 SLLELDLSCCRSVTNVGISFLSK-RSLQFLKLGFCSPVKKRSQITGQLLEAVGKLTQIQT 301
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSD---------TQVGSSGLRHLSGLTNLESINL 331
L L C I +GL G C CL+LSD T G + + H G NL ++L
Sbjct: 302 LKLAGCEIAGDGL-RFVGSC---CLQLSDLSLSKCRGVTDSGMASIFH--GCKNLRKLDL 355
Query: 332 S----FTGISDGSL-RKLAGLSSLK-----------------------SLNLDARQITDT 363
+ T I+ ++ R AGL SLK L++ I D
Sbjct: 356 TCCLDLTEITACNIARSSAGLVSLKIEACRILTENNIPLLMERCSCLEELDVTDCNIDDA 415
Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEIC-GGGLTDAGVKHIKD-LS 420
GL + L L L +++D+G ++ RN +L L++ G + DAGV I
Sbjct: 416 GLECIAKCKFLKTLKLGFCKVSDNGIEHVGRNCSDLIELDLYRSGNVGDAGVASIAAGCR 475
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESC 479
L +LNLS N+TD ++ IS L+ L L + + GL + L KNL L L+ C
Sbjct: 476 KLRILNLSYCPNITDASIVSISQLSHLQQLEIRGCK--GVGLEKKLPEFKNLVELDLKHC 533
Query: 480 KV 481
+
Sbjct: 534 GI 535
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 106/420 (25%), Positives = 189/420 (45%), Gaps = 60/420 (14%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
LQ + L G++D + +AS L ++D+S +++TD G+ L + +L+ L+ C
Sbjct: 171 LQVVVLKGCVGISDAGLCFLASNCKELTTIDVSYTEITDDGVRCLSNLPSLRVLNLAACS 230
Query: 93 QISDGGLEH------------LRGLSNL-------TSLSF---------RRNNAITAQGM 124
+ D GL R ++N+ SL F ++ + IT Q +
Sbjct: 231 NVGDAGLTRTSTSLLELDLSCCRSVTNVGISFLSKRSLQFLKLGFCSPVKKRSQITGQLL 290
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKG--LMKLESLNIKWCNCITDSDMKPL-SGLTN 181
+A L + L L C I G + G ++L L++ C +TDS M + G N
Sbjct: 291 EAVGKLTQIQTLKLAGC-EIAGDGLRFVGSCCLQLSDLSLSKCRGVTDSGMASIFHGCKN 349
Query: 182 LKSLQISC----SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL----GSLFYL 233
L+ L ++C +++T IA + L L +E C + +++ L L L
Sbjct: 350 LRKLDLTCCLDLTEITACNIA--RSSAGLVSLKIEACRILTE--NNIPLLMERCSCLEEL 405
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCG-IGDE 291
++ C + D G E +K LK L LGF +++D + H+ + ++L L+L G +GD
Sbjct: 406 DVTDCNIDDAGLECIAKCKFLKTLKLGFCKVSDNGIEHVGRNCSDLIELDLYRSGNVGDA 465
Query: 292 GLVNLTGLC------NLK-CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
G+ ++ C NL C ++D + S + LS L LE G+ +KL
Sbjct: 466 GVASIAAGCRKLRILNLSYCPNITDASIVS--ISQLSHLQQLEIRGCKGVGLE----KKL 519
Query: 345 AGLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
+L L+L I D G+ ++ L L+L RI+++ L N + L+++++
Sbjct: 520 PEFKNLVELDLKHCGIGDRGMTSIVHCFPNLQQLNLSYCRISNAALVMLGNLRCLQNVKL 579
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 121/258 (46%), Gaps = 39/258 (15%)
Query: 245 CEKFSKIG--SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
C++F G S K + L +E+ L G+ ESL+L SC I DE L L G
Sbjct: 35 CKRFYAAGAESQKTMRLFNSELLPRALARHTGI---ESLDLSSCIKITDEDLA-LVG--- 87
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLS-------------FTGISDGSLRKLAGLS 348
EL+ T++ S GL + G T + L+ + D L + L
Sbjct: 88 ----ELAGTRLRSLGLARMGGFTVAGIVALARDCSALVELDLRCCNSLGDLELAAVCQLG 143
Query: 349 SLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR----ITDSGAAYLR-NFKNLRSLE 402
+L+ L+L I+D GL L + G L + + I+D+G +L N K L +++
Sbjct: 144 NLRKLDLTGCYMISDAGLGCLAA--GCKKLQVVVLKGCVGISDAGLCFLASNCKELTTID 201
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAG 461
+ +TD GV+ + +L SL +LNL+ N+ D L S T L+ L++S R +T+ G
Sbjct: 202 VSYTEITDDGVRCLSNLPSLRVLNLAACSNVGDAGLTRTS--TSLLELDLSCCRSVTNVG 259
Query: 462 LRHLKPLKNLRSLTLESC 479
+ L ++L+ L L C
Sbjct: 260 ISFLSK-RSLQFLKLGFC 276
>gi|290982223|ref|XP_002673830.1| predicted protein [Naegleria gruberi]
gi|284087416|gb|EFC41086.1| predicted protein [Naegleria gruberi]
Length = 572
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 104/368 (28%), Positives = 168/368 (45%), Gaps = 51/368 (13%)
Query: 151 LKGLMKLESLNIKWC----NCITDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAYLKGLQK 205
+ + KLES+ +C N + + +MK +S L NLK IS ++ + + L L+K
Sbjct: 214 FEHIRKLESITDLFCLTFRNNLFEEEMKFISPLGNLKKFHFISKGRIKEEAVKDLSTLKK 273
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L+L+ +TA F + ++K LNL N I
Sbjct: 274 LEELHLDNNLITAC---------------------------NFPYLENMKSLNLQNNRIG 306
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
+E ++L L+NL LNL + IG +GL L LK L LS QVG G +LS
Sbjct: 307 NEGAINLCSLSNLTELNLSNNLIGGQGLKYFYKLSQLKILNLSSNQVGDVGANYLSENVK 366
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
LE+++L + I + LR L LK L L+ +I + GL L++ L +L + I
Sbjct: 367 LENLSLKESLIGEEGLRNFGNLKLLKYLMLNNNKIGN-GLKYLSNCNELEYLHVGSNDIG 425
Query: 386 DSGAA--YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
D + F+NL L+I ++ I ++ L LN+S N ++ D L L+S
Sbjct: 426 DESVIELFRSEFRNLIHLDISHNYVSYKCCDVISKMNQLKELNISNNPSIGDTGLSLLSP 485
Query: 444 LTGLVSLNVSNSRITSAGL------------RHLKPLKNLRSLTLESCKVTAND--IKRL 489
L+ ++ L +N ++ +G+ H+K K L ++TL++ A + I L
Sbjct: 486 LS-IIKLEANNCGVSDSGIIDYLNFEPKISTLHIKSNK-LSNMTLQALISYAQNRSISEL 543
Query: 490 QSRDLPNL 497
+ D PN
Sbjct: 544 KISDSPNF 551
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 139/295 (47%), Gaps = 15/295 (5%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
NL+ F +I + ++ L L L L NN ITA F L N+ L+L+
Sbjct: 248 NLKKFHFISKGRIKEEAVKDLSTLKKLEELHLD-NNLITACN---FPYLENMKSLNLQNN 303
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
+ G +NL L L LN+ N I +K L+ LK L +S ++V D G YL
Sbjct: 304 RIGNEGAINLCSLSNLTELNLS-NNLIGGQGLKYFYKLSQLKILNLSSNQVGDVGANYLS 362
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
KL L+L+ + L + L L YL LN ++ +G + S L+ L++G
Sbjct: 363 ENVKLENLSLKESLIGEEGLRNFGNLKLLKYLMLNNNKIG-NGLKYLSNCNELEYLHVGS 421
Query: 262 NEITDECLVHL--KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLR 318
N+I DE ++ L NL L++ + + ++ + LK L +S+ +G +GL
Sbjct: 422 NDIGDESVIELFRSEFRNLIHLDISHNYVSYKCCDVISKMNQLKELNISNNPSIGDTGLS 481
Query: 319 HLSGLT--NLESINLSFTGISD-GSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
LS L+ LE+ N G+SD G + L + +L++ + ++++ L AL S
Sbjct: 482 LLSPLSIIKLEANN---CGVSDSGIIDYLNFEPKISTLHIKSNKLSNMTLQALIS 533
>gi|119485475|ref|ZP_01619803.1| Rab family protein [Lyngbya sp. PCC 8106]
gi|119457231|gb|EAW38357.1| Rab family protein [Lyngbya sp. PCC 8106]
Length = 457
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 124/377 (32%), Positives = 192/377 (50%), Gaps = 49/377 (12%)
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
A L+ +++LDL R ++I L L L L LN+ N ITD + PLS LTNL L
Sbjct: 94 AQKSLLQVIELDLSR-SKI-SDLSPLITLPHLTRLNLSE-NQITD--LTPLSNLTNLTRL 148
Query: 186 QISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
+S + + D S I+ L LQ L L E L LS L L L+L+ ++SD
Sbjct: 149 NLSSNLIQDLSPISELPNLQILLLYKNE-----IEVLSPLSNLSGLTELSLDSNKISD-- 201
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV----NLTGLC 300
S++ +L L+L N+I D ++ L NL L+L+ + D L+ NLT L
Sbjct: 202 ISSLSELNNLTNLSLSENQIQDLSIIA--NLENLTQLSLNGNKVNDISLISELQNLTKL- 258
Query: 301 NLKCLELSDTQVGSS---------------GLRHLSGLTNLESINLSFTGISDGSLRKLA 345
NLK ++ D S+ + LS LT LE+++LS I++ ++ L+
Sbjct: 259 NLKTNQIEDLSSLSNLSNLKELNLDSNKLIDVSALSSLTQLETLSLSENNITN--IQPLS 316
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTH-LDLFGARITDSGAAYLRNFKNLRSLEIC 404
L +L +L L + QI+D + AL+SLT LT L+L +I+D L N KNL + +
Sbjct: 317 NLENLITLQLRSNQISD--IKALSSLTNLTEDLNLIDNQISD--IKPLSNLKNLSRVGLS 372
Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
++D +K + DLS L +L L +N +T+ ++ +S LT L LN+ N++I + +
Sbjct: 373 KNQISD--LKPLSDLSKLVILYLDEN-KITE--VQPLSNLTNLTELNLWNNQIKT--IES 425
Query: 465 LKPLKNLRSLTLESCKV 481
L L NL L L+ +
Sbjct: 426 LSTLDNLTYLGLQENPI 442
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 90/193 (46%), Gaps = 23/193 (11%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
LD N I +S L L+ L +LS NN Q + L NL+ L L R +I
Sbjct: 282 LDSNKLIDVS-----ALSSLTQLETLSLSENNITNIQ---PLSNLENLITLQL-RSNQIS 332
Query: 146 GGLVNLKGLMKLESLNIKWCNCITD--SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
++K L L +L + N I + SD+KPLS L NL + +S ++++D + L L
Sbjct: 333 ----DIKALSSLTNL-TEDLNLIDNQISDIKPLSNLKNLSRVGLSKNQISD--LKPLSDL 385
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
KL +L L+ +T LS L +L LNL Q+ E S + +L L L N
Sbjct: 386 SKLVILYLDENKITEV--QPLSNLTNLTELNLWNNQIK--TIESLSTLDNLTYLGLQENP 441
Query: 264 IT-DECLVHLKGL 275
I EC V K +
Sbjct: 442 IEKKECPVQPKSI 454
>gi|290996013|ref|XP_002680577.1| predicted protein [Naegleria gruberi]
gi|284094198|gb|EFC47833.1| predicted protein [Naegleria gruberi]
Length = 395
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 148/329 (44%), Gaps = 8/329 (2%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
G+E + L LT L R + +G K + L L LD+ + G + + +L
Sbjct: 68 GVEAIGLLKQLTELDVRYC-RMGEEGSKIISKLGQLTNLDISHNSIRSKGFKFICEMKQL 126
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
L +++ N + S + L L L IS + + D G + L++LT L++ ++
Sbjct: 127 IILKVQY-NKLEKSSSNQIEDLKQLTKLDISGNNIDDEGAKSIGQLKQLTKLDISVNYLS 185
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
+ LS L L YLN++ + ++ + + L LN+G N++ E + + +
Sbjct: 186 NVGVKHLSDLQQLIYLNVSYNDVDEEVAKDIYNMKKLSKLNIGGNDLNIESFSMIGKMDH 245
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L+ L G+G++G ++ L +L L++S+ Q+ +G LS + +L +++ F I
Sbjct: 246 LKKLEFGVVGLGNDGFEFISKLKHLTMLDISENQINDNGAELLSRMEHLTKLDVGFNSIG 305
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
D +R ++ L L LN + + G ++ + LT L + + D G + KN
Sbjct: 306 DRGIRSISMLKKLTDLNARNNEFGNEGAKYISEMMQLTILQVDENKFGDEGIIAITKMKN 365
Query: 398 LRSLEICGGGLTDAG------VKHIKDLS 420
L+ L I + G KHI L
Sbjct: 366 LKKLRIFSEYMDKEGKDALLNTKHITKLK 394
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 77/334 (23%), Positives = 151/334 (45%), Gaps = 26/334 (7%)
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
T +D++P+ L L IS + + G+ + L++LT L++ C + +S LG
Sbjct: 42 TFNDIEPIGKFKQLTILNISDNPIM-KGVEAIGLLKQLTELDVRYCRMGEEGSKIISKLG 100
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
L L+++ + G + ++ L +L + +N++ ++ L L L++ I
Sbjct: 101 QLTNLDISHNSIRSKGFKFICEMKQLIILKVQYNKLEKSSSNQIEDLKQLTKLDISGNNI 160
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
DEG ++ L L L++S + + G++HLS L L +N+S+ + + + + +
Sbjct: 161 DDEGAKSIGQLKQLTKLDISVNYLSNVGVKHLSDLQQLIYLNVSYNDVDEEVAKDIYNMK 220
Query: 349 SLKSLNLDARQIT------------------------DTGLAALTSLTGLTHLDLFGARI 384
L LN+ + + G ++ L LT LD+ +I
Sbjct: 221 KLSKLNIGGNDLNIESFSMIGKMDHLKKLEFGVVGLGNDGFEFISKLKHLTMLDISENQI 280
Query: 385 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 444
D+GA L ++L L++ + D G++ I L LT LN ++N ++ + IS +
Sbjct: 281 NDNGAELLSRMEHLTKLDVGFNSIGDRGIRSISMLKKLTDLN-ARNNEFGNEGAKYISEM 339
Query: 445 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 478
L L V ++ G+ + +KNL+ L + S
Sbjct: 340 MQLTILQVDENKFGDEGIIAITKMKNLKKLRIFS 373
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/324 (20%), Positives = 144/324 (44%), Gaps = 9/324 (2%)
Query: 153 GLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
GL+K L L++++C + + K +S L L +L IS + + G ++ +++L +L +
Sbjct: 73 GLLKQLTELDVRYCR-MGEEGSKIISKLGQLTNLDISHNSIRSKGFKFICEMKQLIILKV 131
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
+ + + + + L L L+++ + D+G + ++ L L++ N +++ + H
Sbjct: 132 QYNKLEKSSSNQIEDLKQLTKLDISGNNIDDEGAKSIGQLKQLTKLDISVNYLSNVGVKH 191
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
L L L LN+ + +E ++ + L L + + + + +L+ +
Sbjct: 192 LSDLQQLIYLNVSYNDVDEEVAKDIYNMKKLSKLNIGGNDLNIESFSMIGKMDHLKKLEF 251
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
G+ + ++ L L L++ QI D G L+ + LT LD+ I D G
Sbjct: 252 GVVGLGNDGFEFISKLKHLTMLDISENQINDNGAELLSRMEHLTKLDVGFNSIGDRGIRS 311
Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
+ K L L + G K+I ++ LT+L + +N D+ + I+ + L L
Sbjct: 312 ISMLKKLTDLNARNNEFGNEGAKYISEMMQLTILQVDEN-KFGDEGIIAITKMKNLKKLR 370
Query: 452 VSNSRITSAG------LRHLKPLK 469
+ + + G +H+ LK
Sbjct: 371 IFSEYMDKEGKDALLNTKHITKLK 394
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 110/264 (41%), Gaps = 35/264 (13%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
L +D+SG+++ D G + L LD + +S+ G++HL L L L+ N
Sbjct: 148 KQLTKLDISGNNIDDEGAKSIGQLKQLTKLDISVNY-LSNVGVKHLSDLQQLIYLNVSYN 206
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL----ESLNIKWCNCITDSD 172
+ +D E I+ N+K L KL LNI+ + I D
Sbjct: 207 D------------------VDEEVAKDIY----NMKKLSKLNIGGNDLNIESFSMIGKMD 244
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+LK L+ + + G ++ L+ LT+L++ + + LS + L
Sbjct: 245 --------HLKKLEFGVVGLGNDGFEFISKLKHLTMLDISENQINDNGAELLSRMEHLTK 296
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L++ + D G S + L LN NE +E ++ + L L +D GDEG
Sbjct: 297 LDVGFNSIGDRGIRSISMLKKLTDLNARNNEFGNEGAKYISEMMQLTILQVDENKFGDEG 356
Query: 293 LVNLTGLCNLKCLELSDTQVGSSG 316
++ +T + NLK L + + G
Sbjct: 357 IIAITKMKNLKKLRIFSEYMDKEG 380
>gi|422811192|ref|ZP_16859602.1| internalin P4 [Listeria monocytogenes FSL J1-208]
gi|378750825|gb|EHY61417.1| internalin P4 [Listeria monocytogenes FSL J1-208]
Length = 776
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 103/306 (33%), Positives = 153/306 (50%), Gaps = 30/306 (9%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ YL L +L L N++ + L LS L L ++ Q+SD S++ +L
Sbjct: 95 GVQYLNNLTELRLENVDNS---VSDLRPLSGLIKLEVISFYHSQISD--LSPLSELINLT 149
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
L L N+I+D + L TNL +LN+ S I D L L+ L NL L+ + Q+ S
Sbjct: 150 SLTLNDNQISD--ISPLANSTNLTTLNMSSNKISD--LSPLSNLSNLNKLDFRENQI--S 203
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
L LSGL NL S+ ++ ISD + LA L++L +LN+ QITD +
Sbjct: 204 DLSPLSGLINLTSLTINANKISD--ISPLANLTNLTTLNMGINQITDLSSLSGLISLVDL 261
Query: 376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
HL + +ITD A L + NLRSL+I I DLSSL+ L + +L D
Sbjct: 262 HLSV--NQITDISA--LSDLTNLRSLDIDHN--------QIIDLSSLSNLTNLKRLHLVD 309
Query: 436 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDL 494
+ I+ L+GL++L RI ++ + PL +L + LE V +N I + S ++L
Sbjct: 310 NQISSITPLSGLINLTDLEIRINQ--VKDVSPLSSLAN--LEMLYVDSNQISDISSLKNL 365
Query: 495 PNLVSF 500
NLV F
Sbjct: 366 KNLVLF 371
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 101/338 (29%), Positives = 154/338 (45%), Gaps = 64/338 (18%)
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
+ L + N+++ S +N + +G++ L NL +L LE L L GL+KLE
Sbjct: 72 DELNSVENISADSGLYDNVASIEGVQY---LNNLTELRLENVDNSVSDLRPLSGLIKLEV 128
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
++ SD+ PLS L NL SL ++ ++++D I+ L LT LN+ + +
Sbjct: 129 ISFYHSQI---SDLSPLSELINLTSLTLNDNQISD--ISPLANSTNLTTLNMSSNKI--S 181
Query: 220 CLDSLSALGSLFYLNLNRCQLSD--------------DGCEKFSKIGSLK------VLNL 259
L LS L +L L+ Q+SD K S I L LN+
Sbjct: 182 DLSPLSNLSNLNKLDFRENQISDLSPLSGLINLTSLTINANKISDISPLANLTNLTTLNM 241
Query: 260 GFNEITDEC--------------------LVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
G N+ITD + L LTNL SL++D I D L +L+ L
Sbjct: 242 GINQITDLSSLSGLISLVDLHLSVNQITDISALSDLTNLRSLDIDHNQIID--LSSLSNL 299
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
NLK L L D Q+ S + LSGL NL + + + D + L+ L++L+ L +D+ Q
Sbjct: 300 TNLKRLHLVDNQI--SSITPLSGLINLTDLEIRINQVKD--VSPLSSLANLEMLYVDSNQ 355
Query: 360 ITDTGLAALTSLTGLTHLDLFGAR---ITDSGAAYLRN 394
I+D ++SL L +L LF A I + Y +N
Sbjct: 356 ISD-----ISSLKNLKNLVLFSAHSQTIVNKPVNYQKN 388
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 103/194 (53%), Gaps = 30/194 (15%)
Query: 275 LTNLESLNLDSCGIGD-----EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
L ++E+++ DS G+ D EG+ L L L+ LE D V S LR LSGL LE I
Sbjct: 74 LNSVENISADS-GLYDNVASIEGVQYLNNLTELR-LENVDNSV--SDLRPLSGLIKLEVI 129
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
+ + ISD L L+ L +L SL L+ QI+D ++ L + T LT L++ +I+D
Sbjct: 130 SFYHSQISD--LSPLSELINLTSLTLNDNQISD--ISPLANSTNLTTLNMSSNKISD--L 183
Query: 390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT-LLNLSQ---NCN-LTDKTLELISGL 444
+ L N NL L D I DLS L+ L+NL+ N N ++D + ++ L
Sbjct: 184 SPLSNLSNLNKL--------DFRENQISDLSPLSGLINLTSLTINANKISD--ISPLANL 233
Query: 445 TGLVSLNVSNSRIT 458
T L +LN+ ++IT
Sbjct: 234 TNLTTLNMGINQIT 247
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 116/226 (51%), Gaps = 23/226 (10%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
+ ++L ++++S + ++D L L + SNL LDF QISD L L GL NLTSL+
Sbjct: 165 ANSTNLTTLNMSSNKISD--LSPLSNLSNLNKLDFREN-QISD--LSPLSGLINLTSLTI 219
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NA + A L NL L++ +I + ++ L++ N IT D+
Sbjct: 220 ---NANKISDISPLANLTNLTTLNM-GINQITDLSSLSGLISLVD-LHLS-VNQIT--DI 271
Query: 174 KPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
LS LTNL+SL I +++ D S ++ L L++L L++ + +T LS L +L
Sbjct: 272 SALSDLTNLRSLDIDHNQIIDLSSLSNLTNLKRLHLVDNQISSITP-----LSGLINLTD 326
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
L + Q+ D S + +L++L + N+I+D + LK L NL
Sbjct: 327 LEIRINQVKD--VSPLSSLANLEMLYVDSNQISD--ISSLKNLKNL 368
>gi|414076287|ref|YP_006995605.1| hypothetical protein ANA_C11003 [Anabaena sp. 90]
gi|413969703|gb|AFW93792.1| leucine-rich repeat-containing protein [Anabaena sp. 90]
Length = 474
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 98/260 (37%), Positives = 140/260 (53%), Gaps = 20/260 (7%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
SD+KPLS LT L SL +S +K++D I L L KLT L L ++ + SLS L L
Sbjct: 98 SDIKPLSNLTKLTSLGLSKNKISD--IKSLSNLTKLTSLGLSKNKISD--IKSLSNLTKL 153
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L+L Q+SD S + L L+L N+I+D + L LTNL LNL I D
Sbjct: 154 TKLDLVGNQISD--TTPLSNLTKLTSLDLWGNQISD--IKPLSNLTNLTFLNLVGNKISD 209
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
+ L+ L L L LS ++ S ++ LS TNL ++L ISD + L+ L+ L
Sbjct: 210 --IKPLSNLTKLTSLGLSKNKI--SDIKSLSNFTNLTKLDLVGNQISDTT--PLSNLTKL 263
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
SL+L QI+D + L++LT LT L L+G +I S L N NL SL + ++D
Sbjct: 264 TSLDLWGNQISD--IKPLSNLTNLTFLILWGNQI--SNIKPLSNLTNLTSLTLSLNQISD 319
Query: 411 AGVKHIKDLSSLTLLNLSQN 430
+K + +L++LT L+L N
Sbjct: 320 --IKPLSNLTNLTYLDLWGN 337
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 135/420 (32%), Positives = 208/420 (49%), Gaps = 56/420 (13%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSN---LTS 110
SQ + +L+ +L+ ++++ + +K SNL L + +S + ++ LSN LTS
Sbjct: 78 SQANQILT-NLTSLGLSENKISDIKPLSNLTKLT---SLGLSKNKISDIKSLSNLTKLTS 133
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
L +N +K+ + L L KLDL L L KL SL++ W N I
Sbjct: 134 LGLSKNK---ISDIKSLSNLTKLTKLDL--VGNQISDTTPLSNLTKLTSLDL-WGNQI-- 185
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
SD+KPLS LTNL L + +K++D I L L KLT L L ++ + SLS +L
Sbjct: 186 SDIKPLSNLTNLTFLNLVGNKISD--IKPLSNLTKLTSLGLSKNKISD--IKSLSNFTNL 241
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L+L Q+SD S + L L+L N+I+D + L LTNL L L G
Sbjct: 242 TKLDLVGNQISD--TTPLSNLTKLTSLDLWGNQISD--IKPLSNLTNLTFLIL--WGNQI 295
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
+ L+ L NL L LS Q+ S ++ LS LTNL ++L ISD ++ L+ L++L
Sbjct: 296 SNIKPLSNLTNLTSLTLSLNQI--SDIKPLSNLTNLTYLDLWGNKISD--IKPLSNLTNL 351
Query: 351 KSLNLDARQITD--------------------TGLAALTSLTGLTHLDLFGARITDSGAA 390
L L + +I+D + + L+SLT LT L L +I+D
Sbjct: 352 TYLYLLSNKISDIKPLSNLTNLTLLFLSLNQISDIKPLSSLTNLTFLILSKNQISD--IK 409
Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
L N NL SL + ++D +K + +L++LT L+L +N ++D ++ +S LT L L
Sbjct: 410 PLSNLTNLTSLGLSENKISD--IKPLSNLTNLTYLSLWENP-ISD--IKPLSNLTNLTEL 464
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 118/331 (35%), Positives = 171/331 (51%), Gaps = 33/331 (9%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI--QISDGGLEHLRGLSNLTSLSFR 114
+ L S+DL G+ ++D +K SNL +L F + +ISD ++ L L+ LTSL
Sbjct: 173 TKLTSLDLWGNQISD-----IKPLSNLTNLTFLNLVGNKISD--IKPLSNLTKLTSLGLS 225
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+N +K+ + NL KLDL L L KL SL++ W N I SD+K
Sbjct: 226 KNK---ISDIKSLSNFTNLTKLDL--VGNQISDTTPLSNLTKLTSLDL-WGNQI--SDIK 277
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
PLS LTNL L + +++ S I L L LT L L ++ + LS L +L YL+
Sbjct: 278 PLSNLTNLTFLILWGNQI--SNIKPLSNLTNLTSLTLSLNQISD--IKPLSNLTNLTYLD 333
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
L ++SD + S + +L L L N+I+D + L LTNL L L I D +
Sbjct: 334 LWGNKISD--IKPLSNLTNLTYLYLLSNKISD--IKPLSNLTNLTLLFLSLNQISD--IK 387
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
L+ L NL L LS Q+ S ++ LS LTNL S+ LS ISD ++ L+ L++L L+
Sbjct: 388 PLSSLTNLTFLILSKNQI--SDIKPLSNLTNLTSLGLSENKISD--IKPLSNLTNLTYLS 443
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L I+D + L++LT LT L L+ T
Sbjct: 444 LWENPISD--IKPLSNLTNLTELYLWENPFT 472
>gi|320165418|gb|EFW42317.1| tyrosine-protein kinase CSK [Capsaspora owczarzaki ATCC 30864]
Length = 953
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 128/289 (44%), Gaps = 2/289 (0%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N IT +GLT L L + +++T GL LT L +T+ D+ +
Sbjct: 9 NPITSIPTNAFTGLTALTELSLLYNQITGISAGTFTGLTALTALYFASNQITSIPADAFT 68
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLESLNLD 284
L +L +L+L Q++ F+ + +L L+L +N+IT LT L L+LD
Sbjct: 69 GLTALTHLSLQYNQITSISGTAFTSLTALTYLSLQYNQITSISGTAFTFNLTALTYLSLD 128
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
S I + TGL L L L Q+ S + +GLT L S+ L I+
Sbjct: 129 SNQITSIPVGAFTGLTALTYLSLYTNQITSISVNAFTGLTALASLVLQNNQITSIPAAAC 188
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
GL +L L+L QIT A T LT LT+L + +IT A + L L +
Sbjct: 189 TGLPALTELSLGINQITSIPADAFTGLTALTYLSVENNQITSIPAGAFTDLAALTDLHLD 248
Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
G +T L++LT L L QN +T L GL ++L++S
Sbjct: 249 GNQITSIPDFSFTGLTALTTLAL-QNNPITTLPPGLFKGLPNALALSLS 296
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 113/253 (44%), Gaps = 4/253 (1%)
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
Y+N N ++ F+ + +L L+L +N+IT GLT L +L S I
Sbjct: 5 YINSN--PITSIPTNAFTGLTALTELSLLYNQITGISAGTFTGLTALTALYFASNQITSI 62
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-GLSSL 350
TGL L L L Q+ S + LT L ++L + I+ S L++L
Sbjct: 63 PADAFTGLTALTHLSLQYNQITSISGTAFTSLTALTYLSLQYNQITSISGTAFTFNLTAL 122
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
L+LD+ QIT + A T LT LT+L L+ +IT L SL + +T
Sbjct: 123 TYLSLDSNQITSIPVGAFTGLTALTYLSLYTNQITSISVNAFTGLTALASLVLQNNQITS 182
Query: 411 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 470
L +LT L+L N +T + +GLT L L+V N++ITS L
Sbjct: 183 IPAAACTGLPALTELSLGIN-QITSIPADAFTGLTALTYLSVENNQITSIPAGAFTDLAA 241
Query: 471 LRSLTLESCKVTA 483
L L L+ ++T+
Sbjct: 242 LTDLHLDGNQITS 254
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 101/226 (44%), Gaps = 8/226 (3%)
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
SL +N IS L L+ L SL + + +I+ + + LD + T I
Sbjct: 77 SLQYNQITSISGTAFTSLTALTYL-SLQYNQITSISGTAFTFNLTALTYLSLDSNQITSI 135
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
G GL L L++ + N IT + +GLT L SL + +++T A GL
Sbjct: 136 PVGA--FTGLTALTYLSL-YTNQITSISVNAFTGLTALASLVLQNNQITSIPAAACTGLP 192
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
LT L+L +T+ D+ + L +L YL++ Q++ F+ + +L L+L N+I
Sbjct: 193 ALTELSLGINQITSIPADAFTGLTALTYLSVENNQITSIPAGAFTDLAALTDLHLDGNQI 252
Query: 265 TDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELS 308
T GLT L +L L + I GL GL N L LS
Sbjct: 253 TSIPDFSFTGLTALTTLALQNNPITTLPPGL--FKGLPNALALSLS 296
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 109/245 (44%), Gaps = 9/245 (3%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLV- 149
QI+ + GL+ LT LS + N IT+ AF L L L L+ + T I G
Sbjct: 58 QITSIPADAFTGLTALTHLSLQYNQ-ITSISGTAFTSLTALTYLSLQYNQITSISGTAFT 116
Query: 150 -NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
NL L L SL+ N IT + +GLT L L + +++T + GL L
Sbjct: 117 FNLTALTYL-SLD---SNQITSIPVGAFTGLTALTYLSLYTNQITSISVNAFTGLTALAS 172
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L L+ +T+ + + L +L L+L Q++ + F+ + +L L++ N+IT
Sbjct: 173 LVLQNNQITSIPAAACTGLPALTELSLGINQITSIPADAFTGLTALTYLSVENNQITSIP 232
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
L L L+LD I + TGL L L L + + + GL N +
Sbjct: 233 AGAFTDLAALTDLHLDGNQITSIPDFSFTGLTALTTLALQNNPITTLPPGLFKGLPNALA 292
Query: 329 INLSF 333
++LS+
Sbjct: 293 LSLSY 297
>gi|300693896|ref|YP_003749869.1| type III effector protein [Ralstonia solanacearum PSI07]
gi|299075933|emb|CBJ35242.1| leucine-rich-repeat type III effector protein (GALA2) [Ralstonia
solanacearum PSI07]
Length = 1002
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 112/377 (29%), Positives = 173/377 (45%), Gaps = 7/377 (1%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
G L S+DLS + + D G L ++L SL+ + +ISD G ++LTSL+ R
Sbjct: 599 GRKLESLDLSDTPIGDRGAQLLASSTSLTSLNLSGN-EISDAGAAAFADNTSLTSLNLRG 657
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI--KWCNCITDSDM 173
N+ I+ G +A L LD+ + G+ L L SLN+ W I D +
Sbjct: 658 NH-ISDAGAEALGRNTVLTSLDVSANPIGNTGVQALASSRSLTSLNLCSTW---IEDEGV 713
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+ L+ T L+SL IS ++ A L + L L C +T L+++ SL L
Sbjct: 714 EALASNTVLRSLDISHNRFGAQFAAELAQNRTLASLKANHCSLTNNVAQQLASIRSLTAL 773
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
L+ + D G + + SL+ L+L N I L L L SL++ G GD G
Sbjct: 774 ELSSNLIDDAGVQAIVRNASLRSLDLSQNPIGLGGLHALALSRTLTSLDVSCIGCGDRGG 833
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
+ L+ +L L+L + S G++ L+ +L S++LS I + R LA L SL
Sbjct: 834 LVLSKSRSLTLLKLGSNGIASEGVQILAANRSLISLDLSGNTIDVVAARALAKNPRLASL 893
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
N + + D ++AL LT LD+ R+ GA L + L SL I + G
Sbjct: 894 NASSCGLDDAAVSALAESRSLTSLDVSKNRLFSPGARALAGNRVLTSLNISHNRIGFHGA 953
Query: 414 KHIKDLSSLTLLNLSQN 430
+ + +SLT L+ N
Sbjct: 954 AALAESTSLTFLDARAN 970
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 117/413 (28%), Positives = 183/413 (44%), Gaps = 15/413 (3%)
Query: 95 SDGGLEHLRGLS----NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL-- 148
S G R LS NL + R +T AF+ L N L+ HG L
Sbjct: 510 SHAGPRTRRALSTVSRNLRDAAVARTKHLTVWDKAAFSRLGNYSALE---SLSFHGNLTI 566
Query: 149 VNLKGLMK-LESLNIKWCN--CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
+LK L + L++ C ++ + + L+G L+SL +S + + D G L
Sbjct: 567 ADLKALPPSVRHLDLSGCTGTAVSGAGLAYLAG-RKLESLDLSDTPIGDRGAQLLASSTS 625
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
LT LNL G ++ A + + SL LNL +SD G E + L L++ N I
Sbjct: 626 LTSLNLSGNEISDAGAAAFADNTSLTSLNLRGNHISDAGAEALGRNTVLTSLDVSANPIG 685
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
+ + L +L SLNL S I DEG+ L L+ L++S + G+ L+
Sbjct: 686 NTGVQALASSRSLTSLNLCSTWIEDEGVEALASNTVLRSLDISHNRFGAQFAAELAQNRT 745
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L S+ + +++ ++LA + SL +L L + I D G+ A+ L LDL I
Sbjct: 746 LASLKANHCSLTNNVAQQLASIRSLTALELSSNLIDDAGVQAIVRNASLRSLDLSQNPIG 805
Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 445
G L + L SL++ G D G + SLTLL L N + + +++++
Sbjct: 806 LGGLHALALSRTLTSLDVSCIGCGDRGGLVLSKSRSLTLLKLGSN-GIASEGVQILAANR 864
Query: 446 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL-QSRDLPNL 497
L+SL++S + I R L L SL SC + + L +SR L +L
Sbjct: 865 SLISLDLSGNTIDVVAARALAKNPRLASLNASSCGLDDAAVSALAESRSLTSL 917
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 114/403 (28%), Positives = 182/403 (45%), Gaps = 32/403 (7%)
Query: 58 SLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
S+ +DLSG + V+ +GL +L L+SLD + I D G + L ++LTSL+
Sbjct: 575 SVRHLDLSGCTGTAVSGAGLAYLAG-RKLESLDLSDT-PIGDRGAQLLASSTSLTSLNLS 632
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N I+ G AFA +L L NL+G N I+D+ +
Sbjct: 633 -GNEISDAGAAAFADNTSLTSL-------------NLRG------------NHISDAGAE 666
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L T L SL +S + + ++G+ L + LT LNL + +++L++ L L+
Sbjct: 667 ALGRNTVLTSLDVSANPIGNTGVQALASSRSLTSLNLCSTWIEDEGVEALASNTVLRSLD 726
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
++ + + ++ +L L +T+ L + +L +L L S I D G+
Sbjct: 727 ISHNRFGAQFAAELAQNRTLASLKANHCSLTNNVAQQLASIRSLTALELSSNLIDDAGVQ 786
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
+ +L+ L+LS +G GL L+ L S+++S G D L+ SL L
Sbjct: 787 AIVRNASLRSLDLSQNPIGLGGLHALALSRTLTSLDVSCIGCGDRGGLVLSKSRSLTLLK 846
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
L + I G+ L + L LDL G I A L L SL GL DA V
Sbjct: 847 LGSNGIASEGVQILAANRSLISLDLSGNTIDVVAARALAKNPRLASLNASSCGLDDAAVS 906
Query: 415 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
+ + SLT L++S+N L ++G L SLN+S++RI
Sbjct: 907 ALAESRSLTSLDVSKN-RLFSPGARALAGNRVLTSLNISHNRI 948
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 122/286 (42%), Gaps = 26/286 (9%)
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT-----DECLVHLKGLTNLESLNLDS 285
+Y NL L + K +L+L +E T + + +L L LESLN+
Sbjct: 104 YYPNLESVHLKGNFTLADLKALPATLLHLDLSECTGSARSSKAIAYLASLP-LESLNVKG 162
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
IGD G L +LK L ++ +G++G +L+ L S++L+ I D ++ LA
Sbjct: 163 AQIGDHGARLLAANPSLKTLNMAIGGIGAAGAANLAESRTLMSLDLTQNKIGDKGVQALA 222
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL------------------FGARITDS 387
SL +L + +TD GL AL LT LDL IT
Sbjct: 223 ASRSLTNLTVSNCLVTDIGLEALARSRTLTSLDLGNLVSATYDEAEQADFDRTANDITVK 282
Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
G L +L SL + G DAGV + +LT LN++ N+ + ++ L
Sbjct: 283 GTRALVQSPSLTSLSVQGNLCGDAGVLELAKSRTLTHLNVAF-TNMGPVSARALARNPVL 341
Query: 448 VSLNVS-NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 492
SLNV N I + G L ++L SL + A + L+++
Sbjct: 342 TSLNVRWNYDIGTEGALELTKSESLISLDARDASIGAEGVLALEAK 387
>gi|320163275|gb|EFW40174.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 989
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 107/399 (26%), Positives = 177/399 (44%), Gaps = 42/399 (10%)
Query: 4 RDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVD 63
+++ Q+ +LV + L++ ++ F C LQ + L YP
Sbjct: 460 QEVGMQLMAQLVRDKQLSDKNMGVFLPCHLQVIRLDAYPY-------------------- 499
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF---RRNNAIT 120
VT+ L ++ S LQ L ++ G+ H+ GL+NL L R N+
Sbjct: 500 -----VTNELLCAMRFFSLLQELSIRSAEFVTHVGINHIAGLNNLRVLDLGITRLND--- 551
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL-MKLESLNIKWCNCITDSDMKPLSGL 179
Q M + L L L+LER GL L L L+ L+I C+ +T+ + L+
Sbjct: 552 -QAMPTISQL-PLTVLNLERTLITDSGLARLAPLGATLQHLDISDCSKLTERGLALLAAF 609
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
L++L I+ +TD G L +L LNL + LDS+ L +L+L +
Sbjct: 610 PQLRTLAIAGLPLTDVG--RLSNFPELRSLNLARTAIVEGKLDSIRRYIHLVHLSLANTK 667
Query: 240 LSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLNL-DSCGIGDEGLVNLT 297
L D+ + +L L L +I + + H+ L L L+L D + DEG+ ++
Sbjct: 668 LGDNDVRYLQYLTNLSSLKLPSRFQIGNSSIAHISKLP-LTELDLTDYIHVTDEGIQFIS 726
Query: 298 GLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
L L L LS+T++ S+G+ ++ T LE + L T + D + LA L+ L++L+L
Sbjct: 727 ALAPTLVSLSLSNTKLTSAGIPAVAACTKLEVLQLDRTPLKDDVIPLLAPLTRLRTLSLS 786
Query: 357 ARQITDTGL--AALTSLTGLTHLDLFGARITDSGAAYLR 393
+T + A + T L L+L I + G LR
Sbjct: 787 RTHLTSAVVRSGAFSPFTRLESLNLSWTFIENQGLDQLR 825
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 119/223 (53%), Gaps = 8/223 (3%)
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL-CNL 302
G + + +L+VL+LG + D+ + + L L LNL+ I D GL L L L
Sbjct: 529 GINHIAGLNNLRVLDLGITRLNDQAMPTISQLP-LTVLNLERTLITDSGLARLAPLGATL 587
Query: 303 KCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
+ L++SD +++ GL L+ L + L+ G+ + +L+ L+SLNL I
Sbjct: 588 QHLDISDCSKLTERGLALLAAFPQLRT--LAIAGLPLTDVGRLSNFPELRSLNLARTAIV 645
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLS 420
+ L ++ L HL L ++ D+ YL+ NL SL++ + ++ + HI L
Sbjct: 646 EGKLDSIRRYIHLVHLSLANTKLGDNDVRYLQYLTNLSSLKLPSRFQIGNSSIAHISKL- 704
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTG-LVSLNVSNSRITSAGL 462
LT L+L+ ++TD+ ++ IS L LVSL++SN+++TSAG+
Sbjct: 705 PLTELDLTDYIHVTDEGIQFISALAPTLVSLSLSNTKLTSAGI 747
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 87/181 (48%), Gaps = 30/181 (16%)
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
V G+ H++GL NL ++L T ++D ++ ++ L L LNL+ ITD+GLA L L
Sbjct: 525 VTHVGINHIAGLNNLRVLDLGITRLNDQAMPTISQLP-LTVLNLERTLITDSGLARLAPL 583
Query: 372 -TGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 429
L HLD+ +++T+ G A L F LR+L I G LTD G
Sbjct: 584 GATLQHLDISDCSKLTERGLALLAAFPQLRTLAIAGLPLTDVG----------------- 626
Query: 430 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
+S L SLN++ + I L ++ +L L+L + K+ ND++ L
Sbjct: 627 ----------RLSNFPELRSLNLARTAIVEGKLDSIRRYIHLVHLSLANTKLGDNDVRYL 676
Query: 490 Q 490
Q
Sbjct: 677 Q 677
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 116/254 (45%), Gaps = 8/254 (3%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
L ++ ++G +TD G L + L+SL+ I +G L+ +R +L LS N
Sbjct: 610 PQLRTLAIAGLPLTDVG--RLSNFPELRSLNLARTA-IVEGKLDSIRRYIHLVHLSLA-N 665
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ ++ L NL L L +I + + L L++ +TD ++ +
Sbjct: 666 TKLGDNDVRYLQYLTNLSSLKLPSRFQIGNSSIAHISKLPLTELDLTDYIHVTDEGIQFI 725
Query: 177 SGL-TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
S L L SL +S +K+T +GI + KL +L L+ P+ + L+ L L L+L
Sbjct: 726 SALAPTLVSLSLSNTKLTSAGIPAVAACTKLEVLQLDRTPLKDDVIPLLAPLTRLRTLSL 785
Query: 236 NRCQLSDDGCE--KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+R L+ FS L+ LNL + I ++ L L+ L L +LNLDS +
Sbjct: 786 SRTHLTSAVVRSGAFSPFTRLESLNLSWTFIENQGLDQLR-LPMLTTLNLDSTRVTANVP 844
Query: 294 VNLTGLCNLKCLEL 307
+ LT L L + +
Sbjct: 845 LMLTQLPALTTVRM 858
>gi|343417958|emb|CCD19884.1| leucine-rich repeat region [Trypanosoma vivax Y486]
Length = 389
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 118/338 (34%), Positives = 174/338 (51%), Gaps = 33/338 (9%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L + S+L++LD + C I+D + L LS+L +L AIT + + L +L L
Sbjct: 62 LSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTAIT--DVSPLSKLSSLRML 117
Query: 137 DLERCTRIHGGLVNLKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD 194
DL CT G+ ++ L KL SL + +C +D+ PLS L++L++L +S C+ +TD
Sbjct: 118 DLSHCT----GITDVSPLSKLSSLRTLDLSHCTGITDVSPLSELSSLRTLDLSHCTGITD 173
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
++ L L L L+L C + LS L SL L+L+ C D + G
Sbjct: 174 --VSPLSELSSLRTLDLSHCTGITD-VSPLSKLSSLHELDLSHCTGITDVSLLYRFFGLD 230
Query: 255 KVLNLGFNE---ITDECLVHLKGLTNLESLNLDSC-GIGD-EGLVNLTGLCNLKCLELSD 309
K LG + ITD + L L+ L +L+L C GI D L L GLC L +LS
Sbjct: 231 K---LGLSHCTGITD--VSPLSKLSGLRTLDLSHCTGITDVSPLSKLGGLCEL---DLSH 282
Query: 310 TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAA 367
G + + LS L++L ++LS TGI+D S L+ LSSL++L+L R ITD ++
Sbjct: 283 CT-GITDVSPLSKLSSLRKLDLSHCTGITDVS--PLSVLSSLRTLDLSHCRGITD--VSP 337
Query: 368 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
L++L+GL LDL G SG L + LR L G
Sbjct: 338 LSTLSGLEVLDLSGCTGVRSGLESLCSLSFLRYLSFLG 375
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 133/406 (32%), Positives = 200/406 (49%), Gaps = 49/406 (12%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
LD + C I+D + L LS+L L IT + + L +L LDL CT I
Sbjct: 2 LDLSHCTGITD--VSPLSVLSSLRMLDLSHCTGIT--DVSPLSVLSSLRMLDLSHCTGI- 56
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQ 204
+ L L L +L++ C ITD + PLS L++L++L +S C+ +TD ++ L L
Sbjct: 57 TDVSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTAITD--VSPLSKLS 112
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NE 263
L +L+L C + LS L SL L+L+ C D S++ SL+ L+L
Sbjct: 113 SLRMLDLSHCTGITD-VSPLSKLSSLRTLDLSHCTGITD-VSPLSELSSLRTLDLSHCTG 170
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
ITD + L L++L +L+L C G+ +++ L L L D L H +G+
Sbjct: 171 ITD--VSPLSELSSLRTLDLSHC----TGITDVSPLSKLSSLHELD-------LSHCTGI 217
Query: 324 TN---------LESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLT 372
T+ L+ + LS TGI+D S L+ LS L++L+L ITD ++ L+ L
Sbjct: 218 TDVSLLYRFFGLDKLGLSHCTGITDVS--PLSKLSGLRTLDLSHCTGITD--VSPLSKLG 273
Query: 373 GLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQN 430
GL LDL ITD + L +LR L++ G+TD V + LSSL L+LS
Sbjct: 274 GLCELDLSHCTGITD--VSPLSKLSSLRKLDLSHCTGITD--VSPLSVLSSLRTLDLSHC 329
Query: 431 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
+TD + +S L+GL L++S +GL L L LR L+
Sbjct: 330 RGITD--VSPLSTLSGLEVLDLSGCTGVRSGLESLCSLSFLRYLSF 373
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 110/226 (48%), Gaps = 33/226 (14%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
+L+ L L G+ D S+ SSL ++DLS + +TD + L S+L LD +
Sbjct: 159 SLRTLDLSHCTGITDVSP---LSELSSLRTLDLSHCTGITD--VSPLSKLSSLHELDLSH 213
Query: 91 CIQISDG------------GLEHLRGLSNLTSLS-------FRRNNAITAQGMKAFAGLI 131
C I+D GL H G+++++ LS ++ + + L
Sbjct: 214 CTGITDVSLLYRFFGLDKLGLSHCTGITDVSPLSKLSGLRTLDLSHCTGITDVSPLSKLG 273
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQIS-C 189
L +LDL CT G+ ++ L KL SL + +C +D+ PLS L++L++L +S C
Sbjct: 274 GLCELDLSHCT----GITDVSPLSKLSSLRKLDLSHCTGITDVSPLSVLSSLRTLDLSHC 329
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
+TD ++ L L L +L+L GC + L+SL +L L YL+
Sbjct: 330 RGITD--VSPLSTLSGLEVLDLSGCTGVRSGLESLCSLSFLRYLSF 373
>gi|320168649|gb|EFW45548.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 977
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 107/361 (29%), Positives = 160/361 (44%), Gaps = 16/361 (4%)
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIK 163
SN T LS + N IT+ + AF GL L+ L L + T I GL L L +K
Sbjct: 58 SNTTHLSLQSNQ-ITSISVNAFTGLTALIWLYLTDNQITSISANA--FTGLSALTYLVLK 114
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE-----GCPVTA 218
N I+ +GL+ LK + +S +++ D A GL +++ L L P TA
Sbjct: 115 E-NEISSISANAFTGLSALKEVDLSNNRIIDLPTAAFAGLPQMSTLRLSRNQFNSIPSTA 173
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
L+AL L YL+ N +S F+ +L L L N ITD LT L
Sbjct: 174 -ITTGLTALKEL-YLDANN--ISSISTAAFTGFPALTYLYLADNPITDIPANTFADLTEL 229
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
L L + I GL L L+LS ++ S +GLT L + L +S
Sbjct: 230 RHLYLRNNQISSVSATAFAGLSALNYLDLSMNKISSLSASVFTGLTALSILYLQSNQLSS 289
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
L++L+ L L + Q T+ AA T L L L L G +T + L + L
Sbjct: 290 IPASSFTDLAALQHLYLSSNQFTNLPAAAFTGLDALIVLWLSGNPLTSVPTSALTSLSAL 349
Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
R+L++ +T L++LT+L L N + + +GLT L +L++SN+ +T
Sbjct: 350 RNLDLSSTKITSISANAFAGLNALTVLALHYN-PIASISGSAFTGLTALTALHLSNTPLT 408
Query: 459 S 459
+
Sbjct: 409 T 409
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 135/319 (42%), Gaps = 3/319 (0%)
Query: 167 CITDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
C T+S SG+ +N L + +++T + GL L L L +T+ ++ +
Sbjct: 44 CNTESLTTIPSGIPSNTTHLSLQSNQITSISVNAFTGLTALIWLYLTDNQITSISANAFT 103
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L +L YL L ++S F+ + +LK ++L N I D GL + +L L
Sbjct: 104 GLSALTYLVLKENEISSISANAFTGLSALKEVDLSNNRIIDLPTAAFAGLPQMSTLRLSR 163
Query: 286 CGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
TGL LK L L + S +G L + L+ I+D
Sbjct: 164 NQFNSIPSTAITTGLTALKELYLDANNISSISTAAFTGFPALTYLYLADNPITDIPANTF 223
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
A L+ L+ L L QI+ A L+ L +LDL +I+ A+ L L +
Sbjct: 224 ADLTELRHLYLRNNQISSVSATAFAGLSALNYLDLSMNKISSLSASVFTGLTALSILYLQ 283
Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
L+ DL++L L LS N T+ +GL L+ L +S + +TS
Sbjct: 284 SNQLSSIPASSFTDLAALQHLYLSSN-QFTNLPAAAFTGLDALIVLWLSGNPLTSVPTSA 342
Query: 465 LKPLKNLRSLTLESCKVTA 483
L L LR+L L S K+T+
Sbjct: 343 LTSLSALRNLDLSSTKITS 361
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 100/354 (28%), Positives = 145/354 (40%), Gaps = 30/354 (8%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+ GLS LT L + N I++ AF GL L ++DL I
Sbjct: 93 QITSISANAFTGLSALTYLVLKENE-ISSISANAFTGLSALKEVDLSNNRIIDLPTAAFA 151
Query: 153 GLMKLESLNIK--WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
GL ++ +L + N I + + +GLT LK L + + ++ A G LT L
Sbjct: 152 GLPQMSTLRLSRNQFNSIPSTAIT--TGLTALKELYLDANNISSISTAAFTGFPALTYLY 209
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L P+T ++ + L L +L L Q+S F+ + +L L+L N+I+
Sbjct: 210 LADNPITDIPANTFADLTELRHLYLRNNQISSVSATAFAGLSALNYLDLSMNKISSLSAS 269
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
GLT L L L S + + T L L+ L LS Q TNL +
Sbjct: 270 VFTGLTALSILYLQSNQLSSIPASSFTDLAALQHLYLSSNQ-----------FTNLPAA- 317
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
+FT GL +L L L +T +ALTSL+ L +LDL +IT A
Sbjct: 318 -AFT-----------GLDALIVLWLSGNPLTSVPTSALTSLSALRNLDLSSTKITSISAN 365
Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 444
L L + + L++LT L+LS N LT L GL
Sbjct: 366 AFAGLNALTVLALHYNPIASISGSAFTGLTALTALHLS-NTPLTTLPPGLFQGL 418
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 88/215 (40%), Gaps = 17/215 (7%)
Query: 283 LDSCGIGDEGLVNLTG---LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
+D+CG G G+ + +G +CN + L + + S HLS +N I+
Sbjct: 26 VDACGTG--GVCDCSGTTVICNTESLTTIPSGI-PSNTTHLSLQSN---------QITSI 73
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
S+ GL++L L L QIT A T L+ LT+L L I+ A L+
Sbjct: 74 SVNAFTGLTALIWLYLTDNQITSISANAFTGLSALTYLVLKENEISSISANAFTGLSALK 133
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
+++ + D L ++ L LS+N + + + +GLT L L + + I+S
Sbjct: 134 EVDLSNNRIIDLPTAAFAGLPQMSTLRLSRNQFNSIPSTAITTGLTALKELYLDANNISS 193
Query: 460 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL 494
L L L +T DI DL
Sbjct: 194 ISTAAFTGFPALTYLYLADNPIT--DIPANTFADL 226
>gi|426371210|ref|XP_004052544.1| PREDICTED: F-box/LRR-repeat protein 14 [Gorilla gorilla gorilla]
Length = 307
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 102/288 (35%), Positives = 161/288 (55%), Gaps = 25/288 (8%)
Query: 222 DSLSALGSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTN 277
D +GSL LNL+ C Q++D + ++ + L+VL LG + IT+ L+ + GL
Sbjct: 17 DPEKEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQR 76
Query: 278 LESLNLDSC-GIGDEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNL 326
L+SLNL SC + D G+ +L G+ L+ L L D Q + L+H+S GLT L
Sbjct: 77 LKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGL 136
Query: 327 ESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FG 381
+NLSF G ISD L L+ + SL+SLNL + I+DTG+ A+ SL L+ LD+ F
Sbjct: 137 RLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFC 195
Query: 382 ARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLE 439
++ D AY+ + L+SL +C ++D G+ + ++ + L LN+ Q +TDK LE
Sbjct: 196 DKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLE 255
Query: 440 LIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 485
LI+ L+ L +++ +RIT GL + L L+ L L ++T ++
Sbjct: 256 LIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSE 303
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 159/311 (51%), Gaps = 53/311 (17%)
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
K+ +L++L+ + C QI+D L + AQ +K L L+
Sbjct: 20 KEIGSLRALNLSLCKQITDSSLGRI------------------AQYLKG------LEVLE 55
Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQI 187
L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+ L +
Sbjct: 56 LGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTL 115
Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C +SD
Sbjct: 116 QDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDT 175
Query: 244 GCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL----VN 295
G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 176 GIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQ 234
Query: 296 LTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L LK
Sbjct: 235 MHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYG--CTRITKRGLERITQLPCLKV 291
Query: 353 LNLDARQITDT 363
LNL Q+TD+
Sbjct: 292 LNLGLWQMTDS 302
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 121 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 180
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 181 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 240
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 241 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 277
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 278 RGLERITQLPCLKVLNLGLWQMTD 301
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 105/205 (51%), Gaps = 25/205 (12%)
Query: 304 CLELSDTQVGSSGLRHLSGLTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQ 359
C +++D+ +G ++L GL LE N++ TG+ L GL LKSLNL + R
Sbjct: 33 CKQITDSSLGRIA-QYLKGLEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRH 87
Query: 360 ITDTGLAALTSLT--------GLTHLDLFGA-RITDSGAAYL-RNFKNLR--SLEICGGG 407
++D G+ L +T GL L L ++TD ++ R LR +L CGG
Sbjct: 88 LSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG- 146
Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL 465
++DAG+ H+ + SL LNL N++D + L G L L+VS ++ L ++
Sbjct: 147 ISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYI 206
Query: 466 -KPLKNLRSLTLESCKVTANDIKRL 489
+ L L+SL+L SC ++ + I R+
Sbjct: 207 AQGLDGLKSLSLCSCHISDDGINRM 231
>gi|320165520|gb|EFW42419.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 694
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 99/341 (29%), Positives = 148/341 (43%), Gaps = 25/341 (7%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N IT + LT L L ++ +++TD GL LT+L L G +T + +
Sbjct: 77 NQITSIPASAFANLTALTELDLTVNQITDISANAFAGLAALTMLFLPGNNITGIPANVFA 136
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L +L LNL+ QL+ + F+ + +L+ LNL N+IT L L+SL L
Sbjct: 137 GLTALLVLNLSGNQLASIPADAFTGLTALQTLNLQSNQITSISAAGFADLAALKSLGLSG 196
Query: 286 CGIGDE-----------GLVNL-------------TGLCNLKCLELSDTQVGSSGLRHLS 321
+G G ++L TGL L L LS+ + S ++
Sbjct: 197 NRLGSNLANAFTNQSALGFIDLSNNQITSLLADAFTGLAALNTLFLSNNNITSIPANAVT 256
Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
GLT L+ +++S + AGL++L L+L Q T A T LT LT L L
Sbjct: 257 GLTALKYLDVSGNQFTSFPASSFAGLTALTYLSLSNNQATSISAWAFTGLTALTSLQLSN 316
Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
+ TD A L L + G LT + DL+ L L+LS N +T
Sbjct: 317 NQFTDISANAFAGLPALMELGLAGNQLTSIPTSALLDLTLLNFLSLSAN-QITSIPASAF 375
Query: 442 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
+GLT L SL +S +++TS L L L+L++ T
Sbjct: 376 TGLTALFSLILSRNQLTSIPAAAFSGLTLLNILSLDTNPFT 416
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 98/339 (28%), Positives = 144/339 (42%), Gaps = 4/339 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL- 151
QI+ L+ LT L N IT AFAGL L L L I G N+
Sbjct: 78 QITSIPASAFANLTALTELDLTVNQ-ITDISANAFAGLAALTMLFLPG-NNITGIPANVF 135
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
GL L LN+ N + +GLT L++L + +++T A L L L L
Sbjct: 136 AGLTALLVLNLSG-NQLASIPADAFTGLTALQTLNLQSNQITSISAAGFADLAALKSLGL 194
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
G + + ++ + +L +++L+ Q++ + F+ + +L L L N IT
Sbjct: 195 SGNRLGSNLANAFTNQSALGFIDLSNNQITSLLADAFTGLAALNTLFLSNNNITSIPANA 254
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
+ GLT L+ L++ + GL L L LS+ Q S +GLT L S+ L
Sbjct: 255 VTGLTALKYLDVSGNQFTSFPASSFAGLTALTYLSLSNNQATSISAWAFTGLTALTSLQL 314
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
S +D S AGL +L L L Q+T +AL LT L L L +IT A+
Sbjct: 315 SNNQFTDISANAFAGLPALMELGLAGNQLTSIPTSALLDLTLLNFLSLSANQITSIPASA 374
Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
L SL + LT L+ L +L+L N
Sbjct: 375 FTGLTALFSLILSRNQLTSIPAAAFSGLTLLNILSLDTN 413
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 97/227 (42%), Gaps = 1/227 (0%)
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
L+L N+IT LT L L+L I D GL L L L +
Sbjct: 72 LSLSINQITSIPASAFANLTALTELDLTVNQITDISANAFAGLAALTMLFLPGNNITGIP 131
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
+GLT L +NLS ++ GL++L++LNL + QIT A L L
Sbjct: 132 ANVFAGLTALLVLNLSGNQLASIPADAFTGLTALQTLNLQSNQITSISAAGFADLAALKS 191
Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436
L L G R+ + A N L +++ +T L++L L LS N N+T
Sbjct: 192 LGLSGNRLGSNLANAFTNQSALGFIDLSNNQITSLLADAFTGLAALNTLFLSNN-NITSI 250
Query: 437 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 483
++GLT L L+VS ++ TS L L L+L + + T+
Sbjct: 251 PANAVTGLTALKYLDVSGNQFTSFPASSFAGLTALTYLSLSNNQATS 297
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
SL+L QIT +A +LT LT LDL +ITD A L L + G +T
Sbjct: 71 SLSLSINQITSIPASAFANLTALTELDLTVNQITDISANAFAGLAALTMLFLPGNNITGI 130
Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS---AGLRHLKPL 468
L++L +LNLS N L + +GLT L +LN+ +++ITS AG L L
Sbjct: 131 PANVFAGLTALLVLNLSGN-QLASIPADAFTGLTALQTLNLQSNQITSISAAGFADLAAL 189
Query: 469 KNL 471
K+L
Sbjct: 190 KSL 192
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 122/317 (38%), Gaps = 50/317 (15%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+D GL+ LT L F N IT FAGL L+ L+L
Sbjct: 102 QITDISANAFAGLAALTML-FLPGNNITGIPANVFAGLTALLVLNLSGNQLASIPADAFT 160
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV---------TDSGIAYL--- 200
GL L++LN++ N IT + L LKSL +S +++ S + ++
Sbjct: 161 GLTALQTLNLQ-SNQITSISAAGFADLAALKSLGLSGNRLGSNLANAFTNQSALGFIDLS 219
Query: 201 ------------KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
GL L L L +T+ ++++ L +L YL+++ Q + F
Sbjct: 220 NNQITSLLADAFTGLAALNTLFLSNNNITSIPANAVTGLTALKYLDVSGNQFTSFPASSF 279
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL--- 305
+ + +L L+L N+ T GLT L SL L + D GL L L
Sbjct: 280 AGLTALTYLSLSNNQATSISAWAFTGLTALTSLQLSNNQFTDISANAFAGLPALMELGLA 339
Query: 306 ---------------------ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
LS Q+ S +GLT L S+ LS ++
Sbjct: 340 GNQLTSIPTSALLDLTLLNFLSLSANQITSIPASAFTGLTALFSLILSRNQLTSIPAAAF 399
Query: 345 AGLSSLKSLNLDARQIT 361
+GL+ L L+LD T
Sbjct: 400 SGLTLLNILSLDTNPFT 416
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 88/222 (39%), Gaps = 33/222 (14%)
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
+ GL+ L +L F NN IT+ A GL L LD+ + GL L
Sbjct: 229 DAFTGLAALNTL-FLSNNNITSIPANAVTGLTALKYLDVSGNQFTSFPASSFAGLTALTY 287
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG-----C 214
L++ N T +GLT L SLQ+S ++ TD GL L L L G
Sbjct: 288 LSLSN-NQATSISAWAFTGLTALTSLQLSNNQFTDISANAFAGLPALMELGLAGNQLTSI 346
Query: 215 P-------------------VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
P +T+ + + L +LF L L+R QL+ FS + L
Sbjct: 347 PTSALLDLTLLNFLSLSANQITSIPASAFTGLTALFSLILSRNQLTSIPAAAFSGLTLLN 406
Query: 256 VLNLGFNEITDECLVHLKGLTN-------LESLNLDSCGIGD 290
+L+L N T +GL N ESL+ ++ G+
Sbjct: 407 ILSLDTNPFTTLPPGLFQGLPNDIDLSLYYESLSPNNFSFGE 448
>gi|195430566|ref|XP_002063325.1| GK21848 [Drosophila willistoni]
gi|194159410|gb|EDW74311.1| GK21848 [Drosophila willistoni]
Length = 543
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 120/374 (32%), Positives = 189/374 (50%), Gaps = 68/374 (18%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 207 SPSLFNCLV-RRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 248
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAI 119
+V D L H D NL++LD + C QI+D L +HLR NL +L I
Sbjct: 249 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLR---NLETLELGGCCNI 305
Query: 120 TAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCIT 169
T G+ A GL L L+L C I G+ +L G ++LE L ++ C ++
Sbjct: 306 TNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLS 365
Query: 170 DSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
D + ++ GLT+LKS+ +S C VTDSG+ +L + KL LNL C D++S +
Sbjct: 366 DEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDI 418
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDS 285
G + L++ G S I SL V F ++I+D+ L H+ +GL L SL+L+
Sbjct: 419 GMAY--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQ 463
Query: 286 CGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSL 341
C I D+G++ + L L+ L + +++ GL+ L+ LTNL++I+L T ++ +
Sbjct: 464 CQITDQGMLKIAKSLQELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLTSKGI 523
Query: 342 RKLAGLSSLKSLNL 355
+ L L+ LNL
Sbjct: 524 DIIMKLPKLQKLNL 537
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 114/352 (32%), Positives = 174/352 (49%), Gaps = 58/352 (16%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ G+ A +G N+ ++L H V+L L
Sbjct: 217 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLG-----HAFSVDLP---NL 268
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
++L++ C ITD+ + ++ L NL++L++ C +T++G+ + GL+KL LNL C
Sbjct: 269 KTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSC 328
Query: 215 PVTA-------ACLDSLSALGSLF--YLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A +A G+L YL L CQ LSD+ ++ + SLK +NL F
Sbjct: 329 WHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 388
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
+TD L HL + LE LNL SC I D G+ LT G SG
Sbjct: 389 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTE--------------GGSG----- 429
Query: 322 GLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLD 378
+ S+++SF ISD +L +A GL L+SL+L+ QITD G+ + SL L +L+
Sbjct: 430 ----INSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMLKIAKSLQELENLN 485
Query: 379 LFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 427
+ +RITD G L + NL+++++ G LT G+ I L L LNL
Sbjct: 486 IGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLTSKGIDIIMKLPKLQKLNL 537
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 159/302 (52%), Gaps = 28/302 (9%)
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSA----LGSLFYLNLNRC-QLSDDGCEKFSK-IGSLK 255
G+ LT LNL GC A ++ A L +L L+L+ C Q++D + ++ + +L+
Sbjct: 237 GVPALTSLNLSGC-FNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLE 295
Query: 256 VLNLG--FNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLC--------NLKC 304
L LG N L+ GL L+ LNL SC I D+G+ +L G L+
Sbjct: 296 TLELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEY 355
Query: 305 LELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQI 360
L L D Q + L H++ GLT+L+SINLSF ++D L+ LA + L+ LNL + I
Sbjct: 356 LGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNI 415
Query: 361 TDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI- 416
+D G+A LT +G+ LD+ F +I+D ++ + LRSL + +TD G+ I
Sbjct: 416 SDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMLKIA 475
Query: 417 KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSL 474
K L L LN+ Q +TDK L+ L LT L ++++ +++TS G+ + L L+ L
Sbjct: 476 KSLQELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLTSKGIDIIMKLPKLQKL 535
Query: 475 TL 476
L
Sbjct: 536 NL 537
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 115/237 (48%), Gaps = 34/237 (14%)
Query: 274 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 324
G+ L SLNL C +G V+L L L C +++DT +G +HL L
Sbjct: 237 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLE 295
Query: 325 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-----GLT 375
LE N++ TG+ L GL LK LNL + I+D G+ L + G
Sbjct: 296 TLELGGCCNITNTGL----LLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNL 351
Query: 376 HLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 428
L+ G R++D ++ + +L+S L C +TD+G+KH+ + L LNL
Sbjct: 352 QLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 410
Query: 429 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 482
N++D + L G +G+ SL+VS +I+ L H+ + L LRSL+L C++T
Sbjct: 411 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 467
>gi|449134939|ref|ZP_21770403.1| leucine-rich repeat domain protein [Rhodopirellula europaea 6C]
gi|448886418|gb|EMB16825.1| leucine-rich repeat domain protein [Rhodopirellula europaea 6C]
Length = 341
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 116/249 (46%), Gaps = 2/249 (0%)
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
D+ +K LS + + L + + D + L L L L + G A S+S L +
Sbjct: 83 DNAVKLLSKTSTVSELFMPAAAWADGTVLRLAALPNLKRLRIYGKEFDDAKAKSISGLPA 142
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L + ++DDG +++ L+ ++L + +TD+ L+ + L L LNL I
Sbjct: 143 LIAVTFQDTSVTDDGASVLAELNELQDISLMNSPVTDKTLIAISTLPKLTKLNLRGTKIT 202
Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
E ++ L L+ LEL++T G G+ ++ + LE +NL T I + SL+ G +S
Sbjct: 203 GEAFEPISKLP-LEDLELAETDFGPEGMPAIANIEGLEKVNLWLTKIDNESLKAFEGKTS 261
Query: 350 LKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
L +LN+D IT+ + + SL L L L + L+ + L +L + GL
Sbjct: 262 LTALNIDNCPAITEEAIPVIVSLPHLKLLHLGKTSVAPDALPQLKPLQELETLFVTNLGL 321
Query: 409 TDAGVKHIK 417
+ K ++
Sbjct: 322 EEGPAKKLE 330
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 133/308 (43%), Gaps = 37/308 (12%)
Query: 48 WMDVIASQ----GSSLLSVDL---SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
W D+ ++ G ++ VDL + SD+ D+ + L S + L F +DG +
Sbjct: 54 WDDIAGAKTKLRGDDVVVVDLREVAESDL-DNAVKLLSKTSTVSEL-FMPAAAWADGTVL 111
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
L L NL L A+ K+ +GL L+ + + +
Sbjct: 112 RLAALPNLKRLRIYGKEFDDAKA-KSISGLPALIAVTFQDTS------------------ 152
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+TD L+ L L+ + + S VTD + + L KLT LNL G +T
Sbjct: 153 -------VTDDGASVLAELNELQDISLMNSPVTDKTLIAISTLPKLTKLNLRGTKITGEA 205
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
+ +S L L L L +G + I L+ +NL +I +E L +G T+L +
Sbjct: 206 FEPISKL-PLEDLELAETDFGPEGMPAIANIEGLEKVNLWLTKIDNESLKAFEGKTSLTA 264
Query: 281 LNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
LN+D+C I +E + + L +LK L L T V L L L LE++ ++ G+ +G
Sbjct: 265 LNIDNCPAITEEAIPVIVSLPHLKLLHLGKTSVAPDALPQLKPLQELETLFVTNLGLEEG 324
Query: 340 SLRKLAGL 347
+KL +
Sbjct: 325 PAKKLEAM 332
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 116/260 (44%), Gaps = 2/260 (0%)
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
D+ + SK ++ L + D ++ L L NL+ L + D +++GL
Sbjct: 83 DNAVKLLSKTSTVSELFMPAAAWADGTVLRLAALPNLKRLRIYGKEFDDAKAKSISGLPA 142
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
L + DT V G L+ L L+ I+L + ++D +L ++ L L LNL +IT
Sbjct: 143 LIAVTFQDTSVTDDGASVLAELNELQDISLMNSPVTDKTLIAISTLPKLTKLNLRGTKIT 202
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421
++ L L L+L G + N + L + + + + +K + +S
Sbjct: 203 GEAFEPISKLP-LEDLELAETDFGPEGMPAIANIEGLEKVNLWLTKIDNESLKAFEGKTS 261
Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
LT LN+ +T++ + +I L L L++ + + L LKPL+ L +L + + +
Sbjct: 262 LTALNIDNCPAITEEAIPVIVSLPHLKLLHLGKTSVAPDALPQLKPLQELETLFVTNLGL 321
Query: 482 TANDIKRLQSRDLPNLVSFR 501
K+L++ PNL F
Sbjct: 322 EEGPAKKLEAM-FPNLKRFE 340
>gi|259489824|ref|NP_001159243.1| uncharacterized protein LOC100304332 [Zea mays]
gi|223942967|gb|ACN25567.1| unknown [Zea mays]
gi|413920256|gb|AFW60188.1| hypothetical protein ZEAMMB73_234209 [Zea mays]
Length = 648
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 138/475 (29%), Positives = 228/475 (48%), Gaps = 37/475 (7%)
Query: 38 LGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT-DSGLIHLKDCSNLQSLDFNFCIQISD 96
L + GV + +D + + SL +VDLS D + L + L+ L + C+ ++D
Sbjct: 101 LARASGVGWRGLDALVAACPSLEAVDLSHCVAAGDREMAALAAAAGLRDLVMDKCLGVTD 160
Query: 97 GGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDLERCTRIHGGLVNLKGL 154
GL + G L SLS + I+ G+ A L LD+ + L +L L
Sbjct: 161 VGLAKVAVGCPGLQSLSLKWCREISDIGVDLLAKKCPQLRSLDISYLKVTNESLRSLSTL 220
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLE 212
KLE + + C + D ++ LS ++L+S+ ++ C V+ G+A L G + L +N+
Sbjct: 221 EKLEDIAMVSCLFVDDDGLQMLSMCSSLQSIDVARCHHVSSLGLASLMDGQRSLRKINVA 280
Query: 213 GC--PVTAACLDSLSALG-SLFYLNLNRCQLSDDGCEKFS----KIGSL--KVLNLGF-- 261
+ A L LS +G +L L L DG E F+ IGS ++ +G
Sbjct: 281 HSLHEIEACVLSKLSTIGETLTVLRL-------DGLEIFASNLQAIGSTCKNLVEIGLSK 333
Query: 262 -NEITDECLVHLKG-LTNLESLNLDSCGI-GDEGLVNLTGLC-NLKCLELSDTQ-VGSSG 316
N +TD+ +V L +L ++++ C + + L + C ++CL L V G
Sbjct: 334 CNGVTDDGIVSLVARCRDLRTIDVTCCHLLTNAALAAIAENCRKIECLRLESCPFVSEKG 393
Query: 317 LRHLSGL-TNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTG- 373
L ++ L ++L+ I+L+ I+D +L++LA S L L L I+D GL +++ G
Sbjct: 394 LESIATLCSDLKEIDLTDCRINDAALQQLASCSELLILKLGLCSSISDEGLVYISANCGK 453
Query: 374 LTHLDLFG-ARITDSG-AAYLRNFKNLRSLEIC-GGGLTDAGVKHIKDLSSLTLLNLSQN 430
L LDL+ + +TD G AA K +R L +C +TD G+KH+ L L L L
Sbjct: 454 LVELDLYRCSAVTDDGLAAVASGCKKMRMLNLCYCTQITDGGLKHVGGLEELANLELRCL 513
Query: 431 CNLTDKTLELIS-GLTGLVSLNVSNSR-ITSAGLRHL-KPLKNLRSLTLESCKVT 482
+T + I+ G + LV L++ + AGL L + +NLR LT+ C+VT
Sbjct: 514 VRVTGVGITSIAVGCSSLVELDLKRCYSVDDAGLWALSRYSQNLRQLTVSYCQVT 568
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 118/441 (26%), Positives = 210/441 (47%), Gaps = 53/441 (12%)
Query: 11 FNELVYSRCL--TEVSLE--AFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
+LV +CL T+V L A LQ L L ++D +D++A + L S+D+S
Sbjct: 147 LRDLVMDKCLGVTDVGLAKVAVGCPGLQSLSLKWCREISDIGVDLLAKKCPQLRSLDISY 206
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
VT+ L L L+ + C+ + D GL+ L S+L S+ R + +++ G+ +
Sbjct: 207 LKVTNESLRSLSTLEKLEDIAMVSCLFVDDDGLQMLSMCSSLQSIDVARCHHVSSLGLAS 266
Query: 127 FA-GLINLVKL-------DLERCT--------------RIHGGLV---NLKGL----MKL 157
G +L K+ ++E C R+ G + NL+ + L
Sbjct: 267 LMDGQRSLRKINVAHSLHEIEACVLSKLSTIGETLTVLRLDGLEIFASNLQAIGSTCKNL 326
Query: 158 ESLNIKWCNCITDSDMKPL-SGLTNLKSLQISCSK-VTDSGIAYL-KGLQKLTLLNLEGC 214
+ + CN +TD + L + +L+++ ++C +T++ +A + + +K+ L LE C
Sbjct: 327 VEIGLSKCNGVTDDGIVSLVARCRDLRTIDVTCCHLLTNAALAAIAENCRKIECLRLESC 386
Query: 215 P-VTAACLDSLSALGS-LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVH 271
P V+ L+S++ L S L ++L C+++D ++ + L +L LG + I+DE LV+
Sbjct: 387 PFVSEKGLESIATLCSDLKEIDLTDCRINDAALQQLASCSELLILKLGLCSSISDEGLVY 446
Query: 272 LKG-LTNLESLNLDSC-GIGDEGLVNLTGLC-NLKCLELSD-TQVGSSGLRHLSGLTNLE 327
+ L L+L C + D+GL + C ++ L L TQ+ GL+H+ GL L
Sbjct: 447 ISANCGKLVELDLYRCSAVTDDGLAAVASGCKKMRMLNLCYCTQITDGGLKHVGGLEELA 506
Query: 328 SINL----SFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLT-GLTHLDLFG 381
++ L TG+ S+ G SSL L+L + D GL AL+ + L L +
Sbjct: 507 NLELRCLVRVTGVGITSIA--VGCSSLVELDLKRCYSVDDAGLWALSRYSQNLRQLTVSY 564
Query: 382 ARITDSGAAYLRNFKNLRSLE 402
++T G +L +LR L+
Sbjct: 565 CQVTGLGLCHL--LGSLRCLQ 583
>gi|18568221|gb|AAL75965.1|AF467461_1 PpaA [Danio rerio]
Length = 386
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 172/326 (52%), Gaps = 48/326 (14%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ G+ N++SL +S C +TD+G+ A+++ + L +LNL C
Sbjct: 81 IQGMPNIESLNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLCK----------------- 123
Query: 233 LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GI 288
Q++D + ++ + +L++L+LG + IT+ L+ + GL NL+SLNL SC +
Sbjct: 124 ------QITDSSLGRIAQYLKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHV 177
Query: 289 GDEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-IS 337
D G+ +L G+ L+ L L D Q + L+H+S GL L+ +NLSF G IS
Sbjct: 178 SDVGIGHLAGMTRSAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKGLNLSFCGGIS 237
Query: 338 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAALT-SLTGLTHLDL-FGARITDSGAAYL-R 393
D + L+ ++ L +LNL + I+DTG+ L+ L LD+ F ++ D AY+ +
Sbjct: 238 DAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYGLDVSFCDKVGDQSLAYIAQ 297
Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ LT L ++
Sbjct: 298 GLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGID 357
Query: 452 VSN-SRITSAGLRHLKPLKNLRSLTL 476
+ ++IT GL + L L+ L
Sbjct: 358 LYGCTKITKRGLERITQLPCLKVFNL 383
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 104/312 (33%), Positives = 162/312 (51%), Gaps = 32/312 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 63 RGIKKVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQDIPSLRI 116
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC-P 215
LN+ C ITDS + ++ L NL+ L + CS +T++G+ + GL L LNL C
Sbjct: 117 LNLSLCKQITDSSLGRIAQYLKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRH 176
Query: 216 VTAACLDSLSALG--------SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 264
V+ + L+ + +L +L L CQ L+D + SK + LK LNL F I
Sbjct: 177 VSDVGIGHLAGMTRSAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKGLNLSFCGGI 236
Query: 265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS 321
+D ++HL +T L +LNL SC I D G+++L+ G L L++S +VG L +++
Sbjct: 237 SDAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYGLDVSFCDKVGDQSLAYIA 296
Query: 322 -GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHL 377
GL L+S++L ISD + R + + LK+LN+ +ITD GL + LT LT +
Sbjct: 297 QGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGI 356
Query: 378 DLFG-ARITDSG 388
DL+G +IT G
Sbjct: 357 DLYGCTKITKRG 368
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 166/320 (51%), Gaps = 50/320 (15%)
Query: 61 SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
S++LSG ++TD+GL H ++D +L+ L+ + C QI+D L +
Sbjct: 89 SLNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLCKQITDSSLGRI--------------- 133
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
AQ +K NL LDL C+ I G L+ GL L+SLN++ C ++D +
Sbjct: 134 ---AQYLK------NLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGH 184
Query: 176 LSGLTN--------LKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSL 224
L+G+T L+ L + C K+TD + ++ KGL KL LNL C ++ A + L
Sbjct: 185 LAGMTRSAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKGLNLSFCGGISDAGMIHL 244
Query: 225 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLE 279
S + L+ LNL C +SD G S +G+L++ L++ F +++ D+ L ++ +GL L+
Sbjct: 245 SHMTQLWTLNLRSCDNISDTGIMHLS-MGALRLYGLDVSFCDKVGDQSLAYIAQGLYQLK 303
Query: 280 SLNLDSCGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTG 335
SL+L SC I D+G+ + + LK L + ++ GL ++ LT L I+L T
Sbjct: 304 SLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTK 363
Query: 336 ISDGSLRKLAGLSSLKSLNL 355
I+ L ++ L LK NL
Sbjct: 364 ITKRGLERITQLPCLKVFNL 383
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 137/278 (49%), Gaps = 33/278 (11%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L +DL G S++T++GL+ + NL+SL+ C +SD G+ H
Sbjct: 125 ITDSSLGRIAQYLKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGH 184
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L G++ A G + L L L+ C ++ L ++ KGL KL+
Sbjct: 185 LAGMTR-----------------SAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKG 227
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
LN+ +C I+D+ M LS +T L +L + SC ++D+GI +L G +L L++ C
Sbjct: 228 LNLSFCGGISDAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYGLDVSFCDKV 287
Query: 218 AACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVH 271
SL+ + Y L+L C +SDDG + + + LK LN+G ITD+ L
Sbjct: 288 GD--QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLEL 345
Query: 272 LK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL 307
+ LT L ++L C I GL +T L LK L
Sbjct: 346 IADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVFNL 383
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 93/303 (30%), Positives = 153/303 (50%), Gaps = 26/303 (8%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKL 206
++G+ +ESLN+ C +TD+ + + + +L+ L +S C ++TDS + + + L+ L
Sbjct: 81 IQGMPNIESLNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLCKQITDSSLGRIAQYLKNL 140
Query: 207 TLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQLSDD-------GCEKFSKIGSLKVL 257
LL+L GC L L +L LNL C+ D G + + G L +
Sbjct: 141 ELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLTLE 200
Query: 258 NLGFNE---ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-SDTQ 311
+L + +TD L H+ KGL L+ LNL C GI D G+++L+ + L L L S
Sbjct: 201 HLTLQDCQKLTDLSLKHISKGLNKLKGLNLSFCGGISDAGMIHLSHMTQLWTLNLRSCDN 260
Query: 312 VGSSGLRHLS-GLTNLESINLSFT-GISDGSLRKLA-GLSSLKSLNLDARQITDTGLAAL 368
+ +G+ HLS G L +++SF + D SL +A GL LKSL+L + I+D G+ +
Sbjct: 261 ISDTGIMHLSMGALRLYGLDVSFCDKVGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRM 320
Query: 369 T-SLTGLTHLDLFG-ARITDSGAAYLR-NFKNLRSLEICG-GGLTDAGVKHIKDLSSLTL 424
+ L L++ RITD G + + L +++ G +T G++ I L L +
Sbjct: 321 VRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKV 380
Query: 425 LNL 427
NL
Sbjct: 381 FNL 383
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 126/244 (51%), Gaps = 30/244 (12%)
Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 322
++G+ N+ESLNL C G+G + ++ L L C +++D+ +G R
Sbjct: 81 IQGMPNIESLNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLCKQITDSSLG----RIAQY 136
Query: 323 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 372
L NLE ++L + I++ L +A GL +LKSLNL + R ++D G+ L +T
Sbjct: 137 LKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGC 196
Query: 373 -GLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLS 428
L HL L ++TD ++ + L+ L + GG++DAG+ H+ ++ L LNL
Sbjct: 197 LTLEHLTLQDCQKLTDLSLKHISKGLNKLKGLNLSFCGGISDAGMIHLSHMTQLWTLNLR 256
Query: 429 QNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAND 485
N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++ +
Sbjct: 257 SCDNISDTGIMHLSMGALRLYGLDVSFCDKVGDQSLAYIAQGLYQLKSLSLCSCHISDDG 316
Query: 486 IKRL 489
I R+
Sbjct: 317 INRM 320
>gi|281210637|gb|EFA84803.1| hypothetical protein PPL_01796 [Polysphondylium pallidum PN500]
Length = 739
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 105/333 (31%), Positives = 163/333 (48%), Gaps = 14/333 (4%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+ HL+ +S + F T GM+ F + +L L L C + + +LK ++KLE
Sbjct: 363 MYHLQKVSLVACFGF------TDLGMENFKRMEHLTSLILTDCAVTNVSVKSLKQMVKLE 416
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY-LKGLQKLTLLNLEGCPVT 217
L+++ ITDS + LS L LK L +S +TD GI + + KL LNL VT
Sbjct: 417 ELSLRNTK-ITDSGLTLLSSLVELKFLDLSACNITDEGITFAIPCFTKLETLNLSATSVT 475
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI--GSLKVLNLGFNEITDECLVHLKGL 275
+ L+ L L L L+ C + + F + +LK+L++ +I V+L+ L
Sbjct: 476 EKAIQKLTKL-PLVSLYLSNCPMIGNQSLFFITLFGKTLKLLDIFGTKIGGAGFVNLQRL 534
Query: 276 TNLESLNLD-SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
NL L L + D + +L L N++ L+LSD + + + L+ L L ++LS T
Sbjct: 535 PNLTVLKLPGRDSLSDAHISHLNALQNVRRLDLSDY-INITTIAPLNPLRYLCELSLSNT 593
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
ISD S+ + G S+L LNLD ++ D G++ L SL+ L L L I L
Sbjct: 594 KISDDSIDSIIGCSNLVILNLDRTRVRDIGVSKLISLS-LHTLSLMATGIRGDCLTTLSQ 652
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
L SL I + DA V + DL +LT ++L
Sbjct: 653 LITLTSLNISSNDIQDAKVLPLLDLPNLTYIDL 685
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 101/369 (27%), Positives = 163/369 (44%), Gaps = 41/369 (11%)
Query: 153 GLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQ-ISCSKVTDSGIAYLKGLQKLTLL 209
G K+E LN+ + + I +D LS + +L+ + ++C TD G+ K ++ LT L
Sbjct: 335 GNAKIEELNLNYQHLIVSNDFLQNCLSRMYHLQKVSLVACFGFTDLGMENFKRMEHLTSL 394
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
L C VT + SL + L L+L +++D G S + LK L+L ITDE +
Sbjct: 395 ILTDCAVTNVSVKSLKQMVKLEELSLRNTKITDSGLTLLSSLVELKFLDLSACNITDEGI 454
Query: 270 VH-LKGLTNLESLNLDSCGIGDEGLVNLTGLC-------------------------NLK 303
+ T LE+LNL + + ++ + LT L LK
Sbjct: 455 TFAIPCFTKLETLNLSATSVTEKAIQKLTKLPLVSLYLSNCPMIGNQSLFFITLFGKTLK 514
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L++ T++G +G +L L NL + L +SD + L L +++ L+L + I
Sbjct: 515 LLDIFGTKIGGAGFVNLQRLPNLTVLKLPGRDSLSDAHISHLNALQNVRRLDL-SDYINI 573
Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS-- 420
T +A L L L L L +I+D + NL L + + D GV + LS
Sbjct: 574 TTIAPLNPLRYLCELSLSNTKISDDSIDSIIGCSNLVILNLDRTRVRDIGVSKLISLSLH 633
Query: 421 --SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 478
SL + +C L +S L L SLN+S++ I A + L L NL + L +
Sbjct: 634 TLSLMATGIRGDC------LTTLSQLITLTSLNISSNDIQDAKVLPLLDLPNLTYIDLRN 687
Query: 479 CKVTANDIK 487
+ +K
Sbjct: 688 TQAFTASLK 696
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 134/291 (46%), Gaps = 32/291 (10%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH-LRGLSNLTSLSF 113
Q L + L + +TDSGL L L+ LD + C I+D G+ + + L +L+
Sbjct: 411 QMVKLEELSLRNTKITDSGLTLLSSLVELKFLDLSAC-NITDEGITFAIPCFTKLETLNL 469
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERC-------------------------TRIHG-G 147
++T + ++ L LV L L C T+I G G
Sbjct: 470 SA-TSVTEKAIQKLTKL-PLVSLYLSNCPMIGNQSLFFITLFGKTLKLLDIFGTKIGGAG 527
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
VNL+ L L L + + ++D+ + L+ L N++ L +S + + IA L L+ L
Sbjct: 528 FVNLQRLPNLTVLKLPGRDSLSDAHISHLNALQNVRRLDLS-DYINITTIAPLNPLRYLC 586
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L+L ++ +DS+ +L LNL+R ++ D G K + SL L+L I +
Sbjct: 587 ELSLSNTKISDDSIDSIIGCSNLVILNLDRTRVRDIGVSKLISL-SLHTLSLMATGIRGD 645
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
CL L L L SLN+ S I D ++ L L NL ++L +TQ ++ L+
Sbjct: 646 CLTTLSQLITLTSLNISSNDIQDAKVLPLLDLPNLTYIDLRNTQAFTASLK 696
Score = 38.5 bits (88), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 94/233 (40%), Gaps = 42/233 (18%)
Query: 20 LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKD 79
+TE +++ L L L P + ++ + I G +L +D+ G+ + +G ++L+
Sbjct: 474 VTEKAIQKLTKLPLVSLYLSNCPMIGNQSLFFITLFGKTLKLLDIFGTKIGGAGFVNLQR 533
Query: 80 CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR----------------------RNN 117
NL L +SD + HL L N+ L N
Sbjct: 534 LPNLTVLKLPGRDSLSDAHISHLNALQNVRRLDLSDYINITTIAPLNPLRYLCELSLSNT 593
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC---------NCI 168
I+ + + G NLV L+L+R TR+ G+ KL SL++ +C+
Sbjct: 594 KISDDSIDSIIGCSNLVILNLDR-TRVRDI-----GVSKLISLSLHTLSLMATGIRGDCL 647
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
T LS L L SL IS + + D+ + L L LT ++L A L
Sbjct: 648 TT-----LSQLITLTSLNISSNDIQDAKVLPLLDLPNLTYIDLRNTQAFTASL 695
>gi|21674346|ref|NP_662411.1| Rab family protein [Chlorobium tepidum TLS]
gi|21647522|gb|AAM72753.1| Rab family protein [Chlorobium tepidum TLS]
Length = 1102
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 138/263 (52%), Gaps = 18/263 (6%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
+ ++ L L SL++ W SD+ PL L +L LQ+S +++TD IA L L+ LT
Sbjct: 97 ITDIAPLASLNSLSMLWLFGNKISDIAPLESLKSLTELQLSSNQITD--IAPLASLKSLT 154
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L+L G ++ L +L SL L+L+ Q++D + + SL L+L N+I+D
Sbjct: 155 ELSLSGNNISDIA--PLESLKSLTELSLSSNQITD--IAPLASLKSLTELSLSSNQISD- 209
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
+ L+ L +L L L I D + L L +L L+LS Q+ + + L+ L +L
Sbjct: 210 -IAPLESLKSLTELQLSRNQISD--IAPLESLKSLTELQLSSNQI--TDIAPLASLKSLT 264
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
+ LS ISD + L L+SL L L+ QITD +A L SL LT L+L +ITD
Sbjct: 265 ELQLSRNQISD--IAPLESLNSLSKLWLNGNQITD--IAPLASLNSLTELELSSNQITD- 319
Query: 388 GAAYLRNFKNLRSLEICGGGLTD 410
A L + K+L +L + ++D
Sbjct: 320 -IAPLASLKSLSTLWLSSNQISD 341
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 105/335 (31%), Positives = 157/335 (46%), Gaps = 56/335 (16%)
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVT-AACLDSLSALGSLFYL--------------N 234
+++TD I+ L L L++L L+ +T A L SL++L L+ +
Sbjct: 73 NQITD--ISPLASLNSLSMLWLDRNQITDIAPLASLNSLSMLWLFGNKISDIAPLESLKS 130
Query: 235 LNRCQLSDDGCEKFSKIGSLK---VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
L QLS + + + SLK L+L N I+D + L+ L +L L+L S I D
Sbjct: 131 LTELQLSSNQITDIAPLASLKSLTELSLSGNNISD--IAPLESLKSLTELSLSSNQITD- 187
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
+ L L +L L LS Q+ S + L L +L + LS ISD + L L SL
Sbjct: 188 -IAPLASLKSLTELSLSSNQI--SDIAPLESLKSLTELQLSRNQISD--IAPLESLKSLT 242
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
L L + QITD +A L SL LT L L +I+D A L + +L L + G +TD
Sbjct: 243 ELQLSSNQITD--IAPLASLKSLTELQLSRNQISD--IAPLESLNSLSKLWLNGNQITD- 297
Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---------- 461
+ + L+SLT L LS N +TD + ++ L L +L +S+++I+
Sbjct: 298 -IAPLASLNSLTELELSSN-QITD--IAPLASLKSLSTLWLSSNQISDIAPLASLESLSE 353
Query: 462 -------LRHLKPLKNLRSLTLESCKVTANDIKRL 489
+ + PL +L SLT V N IKRL
Sbjct: 354 LSLSSNQISDISPLASLNSLT--GFDVRRNPIKRL 386
>gi|395743765|ref|XP_003777984.1| PREDICTED: F-box/LRR-repeat protein 14-like, partial [Pongo abelii]
Length = 296
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 101/286 (35%), Positives = 161/286 (56%), Gaps = 25/286 (8%)
Query: 224 LSALGSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLE 279
+ +GSL LNL+ C Q++D + ++ + L+VL LG + IT+ L+ + GL L+
Sbjct: 8 VQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLK 67
Query: 280 SLNLDSC-GIGDEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLES 328
SLNL SC + D G+ +L G+ L+ L L D Q + L+H+S GLT L
Sbjct: 68 SLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRL 127
Query: 329 INLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGAR 383
+NLSF G ISD L L+ + SL+SLNL + I+DTG+ A+ SL L+ LD+ F +
Sbjct: 128 LNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDK 186
Query: 384 ITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELI 441
+ D AY+ + L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI
Sbjct: 187 VGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELI 246
Query: 442 S-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 485
+ L+ L +++ +RIT GL + L L+ L L ++T ++
Sbjct: 247 AEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSE 292
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 97/316 (30%), Positives = 161/316 (50%), Gaps = 53/316 (16%)
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132
G +++ +L++L+ + C QI+D L + AQ +K
Sbjct: 4 GHAFVQEIGSLRALNLSLCKQITDSSLGRI------------------AQYLKG------ 39
Query: 133 LVKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------L 182
L L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L
Sbjct: 40 LEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGL 99
Query: 183 KSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC- 238
+ L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 100 EQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCD 159
Query: 239 QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL- 293
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 160 NISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGIN 218
Query: 294 ---VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 219 RMVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYG--CTRITKRGLERITQL 275
Query: 348 SSLKSLNLDARQITDT 363
LK LNL Q+TD+
Sbjct: 276 PCLKVLNLGLWQMTDS 291
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 110 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 169
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 170 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 229
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 230 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 266
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++TD
Sbjct: 267 RGLERITQLPCLKVLNLGLWQMTD 290
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 105/205 (51%), Gaps = 25/205 (12%)
Query: 304 CLELSDTQVGSSGLRHLSGLTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQ 359
C +++D+ +G ++L GL LE N++ TG+ L GL LKSLNL + R
Sbjct: 22 CKQITDSSLGRIA-QYLKGLEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRH 76
Query: 360 ITDTGLAALTSLT--------GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGG 407
++D G+ L +T GL L L ++TD ++ R LR +L CGG
Sbjct: 77 LSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG- 135
Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL 465
++DAG+ H+ + SL LNL N++D + L G L L+VS ++ L ++
Sbjct: 136 ISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYI 195
Query: 466 -KPLKNLRSLTLESCKVTANDIKRL 489
+ L L+SL+L SC ++ + I R+
Sbjct: 196 AQGLDGLKSLSLCSCHISDDGINRM 220
>gi|168052598|ref|XP_001778727.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669846|gb|EDQ56425.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 643
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 108/414 (26%), Positives = 178/414 (42%), Gaps = 85/414 (20%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL---KGL 203
+ L G L +L C +T++ ++ L+GLT ++ L ++ C K++D + ++ K L
Sbjct: 88 MAYLGGCRHLRALRATDCKALTNNAIRQLTGLTAMEELDLARCRKISDDAVPHILSFKML 147
Query: 204 QKL---------------------TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
+KL LL+L GCPVT A L S ALG L +L+L ++++
Sbjct: 148 RKLGLAETGLTTKGLLLLPGLSRLVLLDLGGCPVTDADLISFQALGMLEHLDLWGSKVTN 207
Query: 243 DGCEKFSKIGSLKVLNLGFNEIT----------------------------DECL--VHL 272
G S +LK LNL +T D L + L
Sbjct: 208 MGARCLSSFKTLKYLNLAMTAVTAIPQLNSLLSLNLCNCDVESIYGDGTFSDSLLRELFL 267
Query: 273 KGLT-------------NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
G + NL L+L S + D L + L L+L T + + +
Sbjct: 268 SGASLSLKDVISGSNTRNLHLLDLASSRVND--LDAFVHIPKLAILDLRATGLTNELMLK 325
Query: 320 LSGL-TNLESINLSFTGISDGSLRKLAGLSS-LKSLNLDARQITDTGLAALTSLTGLTHL 377
GL NL I+LS+T I + +AG + ++ L+L+ + D L L L
Sbjct: 326 FQGLGDNLRWIDLSYTKIDSEGVGAIAGHAPNVEQLSLNHTPVDDNVFIYLVHFPVLQSL 385
Query: 378 DLFGARITD------------SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
+L G+++ S +YL ++LR L++ G+ DA + +K+L L+ L
Sbjct: 386 NLGGSKVNGFMTVGSEEFQQISVLSYLEQLQHLRRLDMRYTGVGDAALHGLKNLVQLSHL 445
Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 479
++ N +L+D+ L+ +S LV L + + IT+ GL KP L L L C
Sbjct: 446 HIHSN-SLSDECLQQLSSFPNLVCLGIGGATITADGLLSYKPPSLLEELDLTDC 498
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 123/473 (26%), Positives = 208/473 (43%), Gaps = 42/473 (8%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIAS--QGSS 58
MLP +++ ++FN L+ S L+ + F+ LQ++ L V+ +WM + +
Sbjct: 41 MLPSELAHELFNSLLQSHLLSATLIGLFQS-NLQEVNLSGEATVDGEWMAYLGGCRHLRA 99
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L + D +T++ + L + ++ LD C +ISD + H+ L L
Sbjct: 100 LRATDCKA--LTNNAIRQLTGLTAMEELDLARCRKISDDAVPHILSFKMLRKLGLAETGL 157
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
T + GL LV LDL C L++ + L LE L++ W + +T+ + LS
Sbjct: 158 TTKGLLLL-PGLSRLVLLDLGGCPVTDADLISFQALGMLEHLDL-WGSKVTNMGARCLSS 215
Query: 179 LTNLKSLQISCSKVT----------------DSGIAYLKGLQKLTLLN---LEGCPVTAA 219
LK L ++ + VT D Y G +LL L G ++
Sbjct: 216 FKTLKYLNLAMTAVTAIPQLNSLLSLNLCNCDVESIYGDGTFSDSLLRELFLSGASLSLK 275
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL-TNL 278
+ S S +L L+L +++D + F I L +L+L +T+E ++ +GL NL
Sbjct: 276 DVISGSNTRNLHLLDLASSRVND--LDAFVHIPKLAILDLRATGLTNELMLKFQGLGDNL 333
Query: 279 ESLNLDSCGIGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLS----- 332
++L I EG+ + G N++ L L+ T V + +L L+S+NL
Sbjct: 334 RWIDLSYTKIDSEGVGAIAGHAPNVEQLSLNHTPVDDNVFIYLVHFPVLQSLNLGGSKVN 393
Query: 333 -FTGISDGSLRKLAGLSSLKSLN----LDARQ--ITDTGLAALTSLTGLTHLDLFGARIT 385
F + ++++ LS L+ L LD R + D L L +L L+HL + ++
Sbjct: 394 GFMTVGSEEFQQISVLSYLEQLQHLRRLDMRYTGVGDAALHGLKNLVQLSHLHIHSNSLS 453
Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 438
D L +F NL L I G +T G+ K S L L+L+ LT+ L
Sbjct: 454 DECLQQLSSFPNLVCLGIGGATITADGLLSYKPPSLLEELDLTDCWLLTEPAL 506
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 83/163 (50%), Gaps = 4/163 (2%)
Query: 324 TNLESINLSFTGISDGS-LRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG 381
+NL+ +NLS DG + L G L++L D + +T+ + LT LT + LDL
Sbjct: 70 SNLQEVNLSGEATVDGEWMAYLGGCRHLRALRATDCKALTNNAIRQLTGLTAMEELDLAR 129
Query: 382 AR-ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
R I+D ++ +FK LR L + GLT G+ + LS L LL+L C +TD L
Sbjct: 130 CRKISDDAVPHILSFKMLRKLGLAETGLTTKGLLLLPGLSRLVLLDLG-GCPVTDADLIS 188
Query: 441 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 483
L L L++ S++T+ G R L K L+ L L VTA
Sbjct: 189 FQALGMLEHLDLWGSKVTNMGARCLSSFKTLKYLNLAMTAVTA 231
>gi|428212495|ref|YP_007085639.1| hypothetical protein Oscil6304_2053 [Oscillatoria acuminata PCC
6304]
gi|428000876|gb|AFY81719.1| leucine-rich repeat (LRR) protein [Oscillatoria acuminata PCC 6304]
Length = 455
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 117/357 (32%), Positives = 176/357 (49%), Gaps = 33/357 (9%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L GL+NL L N + + AGL NL LDL +I + +L L L+ L
Sbjct: 94 LAGLTNLEWLELSYNKI---EDIAPLAGLTNLEWLDL-SYNKIE-DIASLANLNNLKFLA 148
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT-AAC 220
I+ N I D+ PL+ LTNL+ L + +K+ + +A L +LT L+L G + A
Sbjct: 149 IR-DNQI--EDVAPLTNLTNLEVLWLDENKIGE--VASFASLTQLTQLHLSGNQIEDVAP 203
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
L +L+ L SL +LN N+ + + L L L NEI D L LKGL +
Sbjct: 204 LANLTNLESL-WLNENKIK----DVASLVSMTKLTQLYLSSNEIED--LAPLKGLPEMAE 256
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
L L++ I + + L L NL LEL++ Q+ + L+ LT L + L+ I + S
Sbjct: 257 LQLNNNQIVN--VAPLASLTNLTTLELNENQI--KDIAPLASLTQLGFLQLTKNQIVNIS 312
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
LA L+ L++L L +I D +A L SLT LT L L +I D A L + L S
Sbjct: 313 --PLATLTKLETLQLLYNEIKD--VAPLASLTNLTFLTLGENQIKD--VAPLASLTELTS 366
Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
L++ + D + + +L+ LT L+LS N K + ++ LT L L++ N+ I
Sbjct: 367 LDLSNNEIKD--IDPLANLTQLTFLHLSDN---QIKDVAPLASLTQLKHLHLRNNEI 418
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 100/325 (30%), Positives = 153/325 (47%), Gaps = 46/325 (14%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D+ PL+GLTNL+ L++S +K+ D IA L GL L L+L + SL+ L +L
Sbjct: 90 DIAPLAGLTNLEWLELSYNKIED--IAPLAGLTNLEWLDLSYNKIEDIA--SLANLNNLK 145
Query: 232 YLNLNRCQLSDDG--------------------CEKFSKIGSLKVLNLGFNEITDECLVH 271
+L + Q+ D F+ + L L+L N+I D +
Sbjct: 146 FLAIRDNQIEDVAPLTNLTNLEVLWLDENKIGEVASFASLTQLTQLHLSGNQIED--VAP 203
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
L LTNLESL L+ I D + +L + L L LS ++ L L GL + + L
Sbjct: 204 LANLTNLESLWLNENKIKD--VASLVSMTKLTQLYLSSNEI--EDLAPLKGLPEMAELQL 259
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
+ I + + LA L++L +L L+ QI D +A L SLT L L L +I +
Sbjct: 260 NNNQIVN--VAPLASLTNLTTLELNENQIKD--IAPLASLTQLGFLQLTKNQIVNISP-- 313
Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
L L +L++ + D V + L++LT L L +N K + ++ LT L SL+
Sbjct: 314 LATLTKLETLQLLYNEIKD--VAPLASLTNLTFLTLGEN---QIKDVAPLASLTELTSLD 368
Query: 452 VSNSRITSAGLRHLKPLKNLRSLTL 476
+SN+ I + + PL NL LT
Sbjct: 369 LSNNEI-----KDIDPLANLTQLTF 388
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 122/251 (48%), Gaps = 33/251 (13%)
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
D E SK+ L + +EI D + L GLTNLE L L I D + L GL N
Sbjct: 69 DRAQESLSKMTELGIRG---DEIKD--IAPLAGLTNLEWLELSYNKIED--IAPLAGLTN 121
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN---LDAR 358
L+ L+LS ++ ++ L NL NL F I D + +A L++L +L LD
Sbjct: 122 LEWLDLSYNKI-----EDIASLANLN--NLKFLAIRDNQIEDVAPLTNLTNLEVLWLDEN 174
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
+I + +A+ SLT LT L L G +I D A L N NL SL + + D V +
Sbjct: 175 KIGE--VASFASLTQLTQLHLSGNQIED--VAPLANLTNLESLWLNENKIKD--VASLVS 228
Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 478
++ LT L LS N + L + GL + L ++N++I + PL +L +LT +
Sbjct: 229 MTKLTQLYLSSN---EIEDLAPLKGLPEMAELQLNNNQIVNVA-----PLASLTNLT--T 278
Query: 479 CKVTANDIKRL 489
++ N IK +
Sbjct: 279 LELNENQIKDI 289
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 149/344 (43%), Gaps = 61/344 (17%)
Query: 27 AFRDCALQDLC-LGQYPGVNDKWMDV-----IASQGS--SLLSVDLSGSDVTDSGLIHLK 78
A RD ++D+ L + W+D +AS S L + LSG+ + D L
Sbjct: 148 AIRDNQIEDVAPLTNLTNLEVLWLDENKIGEVASFASLTQLTQLHLSGNQIEDVA--PLA 205
Query: 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
+ +NL+SL N +I D L ++ LT L N + + GL + +L L
Sbjct: 206 NLTNLESLWLNEN-KIKDVA--SLVSMTKLTQLYLSSNEI---EDLAPLKGLPEMAELQL 259
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGI 197
+ +VN+ L L +L N D+ PL+ LT L LQ++ +++ + S +
Sbjct: 260 N-----NNQIVNVAPLASLTNLTTLELNENQIKDIAPLASLTQLGFLQLTKNQIVNISPL 314
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
A L L+ L LL E + ++ L SL +L L
Sbjct: 315 ATLTKLETLQLLYNE--------IKDVAPLASL---------------------TNLTFL 345
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSG 316
LG N+I D + L LT L SL+L + I D + L NLT L L LSD Q+
Sbjct: 346 TLGENQIKD--VAPLASLTELTSLDLSNNEIKDIDPLANLTQLT---FLHLSDNQI--KD 398
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
+ L+ LT L+ ++L I D + +L L+ + + ++D I
Sbjct: 399 VAPLASLTQLKHLHLRNNEIKD--IARLPNLTQMDNFSVDGNPI 440
>gi|32477277|ref|NP_870271.1| G protein-coupled receptor LGR4 [Rhodopirellula baltica SH 1]
gi|32447828|emb|CAD77346.1| probable G protein-coupled receptor LGR4 [Rhodopirellula baltica SH
1]
Length = 341
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 115/249 (46%), Gaps = 2/249 (0%)
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
D +K LS + + L + + +D + L L L L + G A S+S L +
Sbjct: 83 DGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKAFDDAKAKSISGLPA 142
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L + ++DDG +++ L+ ++L + +TD+ L + L L LNL I
Sbjct: 143 LVAVTFQDTSVTDDGASVLAELNELQDVSLMKSPVTDKTLTSISTLPKLTKLNLRGTKIT 202
Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
E ++ L L+ LEL++T G G+ ++ + LE INL T I + SL+ G +S
Sbjct: 203 GEAFEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTS 261
Query: 350 LKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
L LN+D IT+ + + SL L L L ++ L+ + L +L + GL
Sbjct: 262 LTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGL 321
Query: 409 TDAGVKHIK 417
+ K ++
Sbjct: 322 EEEPAKELE 330
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 25/226 (11%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
G ++ L L L+ L + + D+ K +SGL L ++ + VTD G + L L +
Sbjct: 108 GTVLRLAALPNLKRLRV-YGKAFDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNE 166
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK--------------- 250
L ++L PVT L S+S L L LNL +++ + E SK
Sbjct: 167 LQDVSLMKSPVTDKTLTSISTLPKLTKLNLRGTKITGEAFEPISKLPLESLELAETDFGP 226
Query: 251 --------IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
I L+ +NL +I +E L +G T+L LN+D+C I +E + + L +
Sbjct: 227 EGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVSLPH 286
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
LK L L T V L L L LE++ ++ G+ + ++L +
Sbjct: 287 LKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGLEEEPAKELEAM 332
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 123/274 (44%), Gaps = 4/274 (1%)
Query: 230 LFYLNLNRCQLSD-DGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
+ ++L SD DG K S ++ L + +D ++ L L NL+ L +
Sbjct: 69 VVVVDLREVAESDLDGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKA 128
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
D +++GL L + DT V G L+ L L+ ++L + ++D +L ++ L
Sbjct: 129 FDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNELQDVSLMKSPVTDKTLTSISTL 188
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
L LNL +IT ++ L L L+L G + N + L + +
Sbjct: 189 PKLTKLNLRGTKITGEAFEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTK 247
Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 467
+ + +K + +SLT+LN+ +T++ + +I L L L++ + ++ L LKP
Sbjct: 248 IDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKP 307
Query: 468 LKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 501
L+ L +L + + + K L++ PNL F
Sbjct: 308 LQELETLFVTNLGLEEEPAKELEAM-FPNLKRFE 340
Score = 42.0 bits (97), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 80/195 (41%), Gaps = 14/195 (7%)
Query: 52 IASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG 104
+ G+S+L+ V L S VTD L + L L+ +I+ E +
Sbjct: 153 VTDDGASVLAELNELQDVSLMKSPVTDKTLTSISTLPKLTKLNLR-GTKITGEAFEPISK 211
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
L L SL + +GM A A + L K++L + L +G L LN+
Sbjct: 212 LP-LESLELAETD-FGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDN 269
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
C IT+ + + L +LK L + + V+ + LK LQ+L L + + L
Sbjct: 270 CPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGLEEEPAKEL 329
Query: 225 SALGSLFYLNLNRCQ 239
A+ + NL R +
Sbjct: 330 EAM----FPNLKRFE 340
>gi|421610748|ref|ZP_16051914.1| leucine-rich repeat domain protein [Rhodopirellula baltica SH28]
gi|408498532|gb|EKK03025.1| leucine-rich repeat domain protein [Rhodopirellula baltica SH28]
Length = 341
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 116/251 (46%), Gaps = 2/251 (0%)
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
D +K LS + + L + + +D + L L L L + G A S+S L +
Sbjct: 83 DGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKAFDDAKAKSISGLPA 142
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L + ++DDG +++ L+ ++L + +TD+ L + L L LNL I
Sbjct: 143 LVAVTFQDTSVTDDGASVLAELNELQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKIT 202
Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
E ++ L L+ LEL++T G G+ ++ + LE INL T I + SL+ G +S
Sbjct: 203 GEAFEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTS 261
Query: 350 LKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
L LN+D IT+ + + SL L L L ++ L+ + L +L + GL
Sbjct: 262 LTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGL 321
Query: 409 TDAGVKHIKDL 419
+ K ++ +
Sbjct: 322 EEEPAKELEAM 332
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 25/226 (11%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
G ++ L L L+ L + + D+ K +SGL L ++ + VTD G + L L +
Sbjct: 108 GTVLRLAALPNLKRLRV-YGKAFDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNE 166
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK--------------- 250
L ++L PVT L S+S L L LNL +++ + E SK
Sbjct: 167 LQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKITGEAFEPISKLPLESLELAETDFGP 226
Query: 251 --------IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
I L+ +NL +I +E L +G T+L LN+D+C I +E + + L +
Sbjct: 227 EGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVSLPH 286
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
LK L L T V L L L LE++ ++ G+ + ++L +
Sbjct: 287 LKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGLEEEPAKELEAM 332
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 123/274 (44%), Gaps = 4/274 (1%)
Query: 230 LFYLNLNRCQLSD-DGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
+ ++L SD DG K S ++ L + +D ++ L L NL+ L +
Sbjct: 69 VVVVDLREVAESDLDGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKA 128
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
D +++GL L + DT V G L+ L L+ ++L + ++D +L ++ L
Sbjct: 129 FDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNELQDVSLMNSPVTDKTLASISTL 188
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
L LNL +IT ++ L L L+L G + N + L + +
Sbjct: 189 PKLTKLNLRGTKITGEAFEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTK 247
Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 467
+ + +K + +SLT+LN+ +T++ + +I L L L++ + ++ L LKP
Sbjct: 248 IDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKP 307
Query: 468 LKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 501
L+ L +L + + + K L++ PNL F
Sbjct: 308 LQELETLFVTNLGLEEEPAKELEAM-FPNLKRFE 340
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 10/165 (6%)
Query: 52 IASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG 104
+ G+S+L+ V L S VTD L + L L+ +I+ E +
Sbjct: 153 VTDDGASVLAELNELQDVSLMNSPVTDKTLASISTLPKLTKLNLR-GTKITGEAFEPISK 211
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
L L SL + +GM A A + L K++L + L +G L LN+
Sbjct: 212 LP-LESLELAETD-FGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDN 269
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
C IT+ + + L +LK L + + V+ + LK LQ+L L
Sbjct: 270 CPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKPLQELETL 314
>gi|290973418|ref|XP_002669445.1| predicted protein [Naegleria gruberi]
gi|284082993|gb|EFC36701.1| predicted protein [Naegleria gruberi]
Length = 280
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 141/299 (47%), Gaps = 28/299 (9%)
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L+I + N I K +S + L L I +++ D G + +++LT L++ G ++
Sbjct: 7 LDIGY-NQIGVEGAKLISEMKQLTLLNIGTNEIGDEGAIMISEMKQLTFLDIGGNQISDE 65
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
S+S + L +L++ + D G + S++ L +LN+G N+
Sbjct: 66 GARSISKMRQLTFLDIYGNGIGDKGAKSISEMQQLTLLNIGGNQ---------------- 109
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
IGDEG ++ + L L++ ++ G + +S + L S+N+ I
Sbjct: 110 --------IGDEGAKLISQMKQLTFLDIYCNEIDVEGAKCISEMQQLTSLNIGSNEIGVE 161
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
++ L+ + L SLN+ I D G ++ + LT LD++ I GA + + L
Sbjct: 162 GVKFLSEMQQLTSLNIGENLIGDEGAKLISQMKQLTFLDIYCNEIGVEGAKSISEMQQLT 221
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN-LTDKTLELISGLTGLVSLNVSNSRI 457
SL I G+ D G K I ++ LT L++ CN + + + IS + L SLN+SN++I
Sbjct: 222 SLNIGENGIGDEGAKLISEMKQLTFLDIY--CNEIGVEGAKYISEMKQLTSLNISNNQI 278
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 112/224 (50%), Gaps = 1/224 (0%)
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
L +L++G+N+I E + + L LN+ + IGDEG + ++ + L L++ Q+
Sbjct: 3 QLTLLDIGYNQIGVEGAKLISEMKQLTLLNIGTNEIGDEGAIMISEMKQLTFLDIGGNQI 62
Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
G R +S + L +++ GI D + ++ + L LN+ QI D G ++ +
Sbjct: 63 SDEGARSISKMRQLTFLDIYGNGIGDKGAKSISEMQQLTLLNIGGNQIGDEGAKLISQMK 122
Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
LT LD++ I GA + + L SL I + GVK + ++ LT LN+ +N
Sbjct: 123 QLTFLDIYCNEIDVEGAKCISEMQQLTSLNIGSNEIGVEGVKFLSEMQQLTSLNIGENL- 181
Query: 433 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
+ D+ +LIS + L L++ + I G + + ++ L SL +
Sbjct: 182 IGDEGAKLISQMKQLTFLDIYCNEIGVEGAKSISEMQQLTSLNI 225
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 111/240 (46%), Gaps = 5/240 (2%)
Query: 51 VIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110
++ S+ L +D+ G+ ++D G + L LD + I D G + + + LT
Sbjct: 44 IMISEMKQLTFLDIGGNQISDEGARSISKMRQLTFLDI-YGNGIGDKGAKSISEMQQLTL 102
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCIT 169
L+ N I +G K + + L LD+ C I G + + +L SLNI N I
Sbjct: 103 LNIG-GNQIGDEGAKLISQMKQLTFLDI-YCNEIDVEGAKCISEMQQLTSLNI-GSNEIG 159
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
+K LS + L SL I + + D G + +++LT L++ + S+S +
Sbjct: 160 VEGVKFLSEMQQLTSLNIGENLIGDEGAKLISQMKQLTFLDIYCNEIGVEGAKSISEMQQ 219
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L LN+ + D+G + S++ L L++ NEI E ++ + L SLN+ + IG
Sbjct: 220 LTSLNIGENGIGDEGAKLISEMKQLTFLDIYCNEIGVEGAKYISEMKQLTSLNISNNQIG 279
>gi|307215039|gb|EFN89866.1| F-box/LRR-repeat protein 14 [Harpegnathos saltator]
Length = 457
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 105/323 (32%), Positives = 165/323 (51%), Gaps = 43/323 (13%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLF 231
L G+ NL++L +S C +TD+GI + + L LT+LNL C VT L ++ +
Sbjct: 150 LRGVPNLEALNLSGCYNITDTGIMSGFCQELPTLTVLNLSLCKQVTDTSLGRIAQ----Y 205
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGD 290
NL +L G + N G +V GL L+ L+L SC + D
Sbjct: 206 LKNLEHLELG----------GCCNITNTGL-------MVIAWGLKKLKRLDLRSCWHVSD 248
Query: 291 EGLVNLTGL-------CNLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGS 340
+G+ L GL L+ L L D Q + LR++S GLT L+SINLSF I+D
Sbjct: 249 QGIAYLAGLNREADGNLALEHLSLQDCQRLSDEALRNVSLGLTTLKSINLSFCVCITDSG 308
Query: 341 LRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFK 396
++ LA +SSL+ LNL + I+D G+A L + +T LD+ F +I D ++ +
Sbjct: 309 VKHLARMSSLRELNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQGLF 368
Query: 397 NLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN 454
NL+SL + ++D G+ K K L L LN+ Q LTD++L ++ + L +++
Sbjct: 369 NLKSLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDRSLHTMAENMKHLKCIDLYG 428
Query: 455 -SRITSAGLRHLKPLKNLRSLTL 476
++IT++GL + L L +L L
Sbjct: 429 CTKITTSGLERIMKLPQLSTLNL 451
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 142/287 (49%), Gaps = 41/287 (14%)
Query: 68 DVTDSGLIHLKDC-SNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMK 125
VTD+ L + NL+ L+ C I++ GL + GL L L R ++ QG+
Sbjct: 193 QVTDTSLGRIAQYLKNLEHLELGGCCNITNTGLMVIAWGLKKLKRLDLRSCWHVSDQGIA 252
Query: 126 AFAGL-------INLVKLDLERCTRIHG-GLVNLK-GLMKLESLNIKWCNCITDSDMKPL 176
AGL + L L L+ C R+ L N+ GL L+S+N+ +C CITDS +K L
Sbjct: 253 YLAGLNREADGNLALEHLSLQDCQRLSDEALRNVSLGLTTLKSINLSFCVCITDSGVKHL 312
Query: 177 SGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTA--ACLDSLSALGSLFY 232
+ +++L+ L + SC ++D G+AYL +G ++T L++ C A + L +L
Sbjct: 313 ARMSSLRELNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQGLFNLKS 372
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDE 291
L+L+ CQ+SD+G K +K L +LE+LN+ C + D
Sbjct: 373 LSLSACQISDEGICKIAKT-----------------------LHDLETLNIGQCSRLTDR 409
Query: 292 GLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGI 336
L + + +LKC++L T++ +SGL + L L ++NL +
Sbjct: 410 SLHTMAENMKHLKCIDLYGCTKITTSGLERIMKLPQLSTLNLGLWHV 456
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 104/333 (31%), Positives = 161/333 (48%), Gaps = 53/333 (15%)
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG--- 178
Q FA L+ ++ + HG L+G+ LE+LN+ C ITD+ + +SG
Sbjct: 121 QAPALFASLVRRGVKKVQVLSLRHGLSAVLRGVPNLEALNLSGCYNITDTGI--MSGFCQ 178
Query: 179 -LTNLKSLQIS-CSKVTDSGIA----YLK-----------------------GLQKLTLL 209
L L L +S C +VTD+ + YLK GL+KL L
Sbjct: 179 ELPTLTVLNLSLCKQVTDTSLGRIAQYLKNLEHLELGGCCNITNTGLMVIAWGLKKLKRL 238
Query: 210 NLEGC-PVTAACLDSLSALG-------SLFYLNLNRCQ-LSDDGCEKFS-KIGSLKVLNL 259
+L C V+ + L+ L +L +L+L CQ LSD+ S + +LK +NL
Sbjct: 239 DLRSCWHVSDQGIAYLAGLNREADGNLALEHLSLQDCQRLSDEALRNVSLGLTTLKSINL 298
Query: 260 GFNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSS 315
F ITD + HL +++L LNL SC I D G+ L G + L++S ++G
Sbjct: 299 SFCVCITDSGVKHLARMSSLRELNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQ 358
Query: 316 GLRHLS-GLTNLESINLSFTGISDGSLRKLAG-LSSLKSLNL-DARQITDTGLAALT-SL 371
L H+S GL NL+S++LS ISD + K+A L L++LN+ ++TD L + ++
Sbjct: 359 ALVHISQGLFNLKSLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDRSLHTMAENM 418
Query: 372 TGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 403
L +DL+G +IT SG + L +L +
Sbjct: 419 KHLKCIDLYGCTKITTSGLERIMKLPQLSTLNL 451
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 128/251 (50%), Gaps = 45/251 (17%)
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLC---------NLK-CLELSDTQVGSSGLRHL 320
L+G+ NLE+LNL C I D G+ ++G C NL C +++DT +G R
Sbjct: 150 LRGVPNLEALNLSGCYNITDTGI--MSGFCQELPTLTVLNLSLCKQVTDTSLG----RIA 203
Query: 321 SGLTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT----- 372
L NLE + L I++ L +A GL LK L+L + ++D G+A L L
Sbjct: 204 QYLKNLEHLELGGCCNITNTGLMVIAWGLKKLKRLDLRSCWHVSDQGIAYLAGLNREADG 263
Query: 373 --GLTHLDLFG-ARITDSGAAYLRN----FKNLRSLE----ICGGGLTDAGVKHIKDLSS 421
L HL L R++D LRN L+S+ +C +TD+GVKH+ +SS
Sbjct: 264 NLALEHLSLQDCQRLSDEA---LRNVSLGLTTLKSINLSFCVC---ITDSGVKHLARMSS 317
Query: 422 LTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLES 478
L LNL N++D + L G + + SL+VS +I L H+ + L NL+SL+L +
Sbjct: 318 LRELNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQGLFNLKSLSLSA 377
Query: 479 CKVTANDIKRL 489
C+++ I ++
Sbjct: 378 CQISDEGICKI 388
>gi|357150706|ref|XP_003575549.1| PREDICTED: F-box/LRR-repeat protein 3-like [Brachypodium
distachyon]
Length = 666
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 143/503 (28%), Positives = 222/503 (44%), Gaps = 80/503 (15%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNF 90
A++ +CL + GV + +D + + L +VDLS D L + L+ L+
Sbjct: 110 AVRQVCLARASGVGWRGLDALVAACPRLEAVDLSHCVGAGDREAAALAAAAGLRELNLEK 169
Query: 91 CIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLERCTRIHGGL 148
C+ ++D GL + G L LSF+ I+ G+ L LD+ + L
Sbjct: 170 CLGVTDMGLAKVAVGCPKLEKLSFKWCREISDIGVDLLVKKCRELRNLDISYLEVSNESL 229
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYL----KG 202
++ L KLE L++ C CI D ++ LS G +L+S+ +S C VT G+A L
Sbjct: 230 RSISTLEKLEELSMVGCLCIDDKGLELLSRGSNSLQSVDVSRCDHVTSEGLASLIDGHSF 289
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK----VLN 258
LQKL AA DSL +G F SK+ +LK +L
Sbjct: 290 LQKL----------NAA--DSLHEIGQNF----------------LSKLATLKETLTMLR 321
Query: 259 LGFNEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLC------NLKCLE-LSD 309
L E++ L+ + +G NL + L C G+ DEG+ +L C +L C L+D
Sbjct: 322 LDGFEVSSSLLLAIAEGCNNLVEVGLSKCNGVTDEGISSLVARCGYLRKIDLTCCNLLTD 381
Query: 310 TQVGS---------------------SGLRHLSG-LTNLESINLSFTGISDGSLRKLAGL 347
+ S GL ++ NL I+L+ G++D +L+ LA
Sbjct: 382 NALVSIADNCKMLECLLLESCSSLSEKGLERIATCCPNLSEIDLTDCGVNDAALQHLAKC 441
Query: 348 SSLKSLNLD-ARQITDTGLAALTS-LTGLTHLDLFGAR-ITDSGAAYL-RNFKNLRSLEI 403
S L L L I+D GL ++S LT +DL+ ITD G A L + K ++ L +
Sbjct: 442 SELLILKLGLCSSISDKGLGFISSKCVKLTEVDLYRCNSITDDGLATLAKGCKKIKMLNL 501
Query: 404 CG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSNSR-ITSA 460
C +TD G+ H+ L LT L L +T + ++ G LV +++ + +
Sbjct: 502 CYCNKITDGGLSHLGSLEELTNLELRCLVRITGIGISSVAIGCKSLVEIDLKRCYSVDDS 561
Query: 461 GLRHLKPLK-NLRSLTLESCKVT 482
GL L NLR LT+ C+VT
Sbjct: 562 GLWALARYALNLRQLTISYCQVT 584
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 126/309 (40%), Gaps = 81/309 (26%)
Query: 47 KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG-L 105
K ++ IA+ +L +DL+ V D+ L HL CS L L C ISD GL +
Sbjct: 408 KGLERIATCCPNLSEIDLTDCGVNDAALQHLAKCSELLILKLGLCSSISDKGLGFISSKC 467
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
LT + R N+IT G+ A KG K++ LN+ +C
Sbjct: 468 VKLTEVDLYRCNSITDDGLATLA-----------------------KGCKKIKMLNLCYC 504
Query: 166 NCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N ITD + L L L +L++ C ++T GI+ V C
Sbjct: 505 NKITDGGLSHLGSLEELTNLELRCLVRITGIGIS----------------SVAIGC---- 544
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
SL ++L RC DD S + +L L NL L +
Sbjct: 545 ---KSLVEIDLKRCYSVDD-----SGLWALARYAL-----------------NLRQLTIS 579
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
C + GL +L L +L+CL+ D + + HLS ++ +E ++ G L+KL
Sbjct: 580 YCQVTGLGLCHL--LSSLRCLQ--DVK-----MVHLSWVS-IEGFEMALRAAC-GRLKKL 628
Query: 345 AGLSSLKSL 353
LSSLKS+
Sbjct: 629 KMLSSLKSV 637
>gi|242071889|ref|XP_002451221.1| hypothetical protein SORBIDRAFT_05g026000 [Sorghum bicolor]
gi|241937064|gb|EES10209.1| hypothetical protein SORBIDRAFT_05g026000 [Sorghum bicolor]
Length = 569
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 120/372 (32%), Positives = 175/372 (47%), Gaps = 49/372 (13%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
G LE L++KWC I+D ++ L+ L+S+ IS KVT+ + L L+KL + +
Sbjct: 125 GCPGLERLSVKWCREISDIGVELLAKKCPQLRSVDISYLKVTNESLRSLSTLEKLEDIAM 184
Query: 212 EGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG-SLKVLNLGFNEITDECL 269
GC + L LS SL + C LS K S IG +L VL L EI L
Sbjct: 185 VGCLFIDDDGLQMLSMCNSLQ--EIETCLLS-----KLSTIGETLTVLRLDGLEIFASNL 237
Query: 270 VHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLC--------------------------- 300
+ NL + L C GI D+G+V+L C
Sbjct: 238 QAIGSTCKNLVEIGLSKCNGITDDGIVSLVAHCCDLRTIDVTCCHLLTNDALAAIAENCR 297
Query: 301 NLKCLELSDTQ-VGSSGLRHLSGL-TNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-A 357
++CL+L + GL ++ L ++L+ I+L+ I+D +L+ LA S L L L
Sbjct: 298 KIECLQLESCPFISEKGLERITTLCSHLKEIDLTDCRINDTALKHLASCSELLILKLGLC 357
Query: 358 RQITDTGLAALTSLTG-LTHLDLFGAR-ITDSG-AAYLRNFKNLRSLEIC-GGGLTDAGV 413
I+D GL ++S G L LDL+ ITD G AA K +R L +C +TDAG+
Sbjct: 358 SSISDEGLVYISSNCGKLVELDLYRCSGITDDGLAAVASGCKKIRVLNLCYCTQITDAGL 417
Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSNSR-ITSAGLRHL-KPLKN 470
KH+ L LT L L +T + I+ G T L+ L++ + AGL L + +N
Sbjct: 418 KHVSALEELTNLELRCLVRITGIGITSIAIGCTSLIELDLKRCYSVDDAGLWALSRYSQN 477
Query: 471 LRSLTLESCKVT 482
LR LT+ C+VT
Sbjct: 478 LRQLTISYCQVT 489
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 102/380 (26%), Positives = 180/380 (47%), Gaps = 36/380 (9%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
++D ++++A + L SVD+S VT+ L L L+ + C+ I D GL+ L
Sbjct: 140 ISDIGVELLAKKCPQLRSVDISYLKVTNESLRSLSTLEKLEDIAMVGCLFIDDDGLQMLS 199
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD-LERCTRIHGGLVNLKGL----MKLE 158
++L + + + +++LD LE I NL+ + L
Sbjct: 200 MCNSLQEI-----ETCLLSKLSTIGETLTVLRLDGLE----IFAS--NLQAIGSTCKNLV 248
Query: 159 SLNIKWCNCITDSDMKPL-SGLTNLKSLQISCSKV--TDSGIAYLKGLQKLTLLNLEGCP 215
+ + CN ITD + L + +L+++ ++C + D+ A + +K+ L LE CP
Sbjct: 249 EIGLSKCNGITDDGIVSLVAHCCDLRTIDVTCCHLLTNDALAAIAENCRKIECLQLESCP 308
Query: 216 -VTAACLDSLSALGS-LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL 272
++ L+ ++ L S L ++L C+++D + + L +L LG + I+DE LV++
Sbjct: 309 FISEKGLERITTLCSHLKEIDLTDCRINDTALKHLASCSELLILKLGLCSSISDEGLVYI 368
Query: 273 KG-LTNLESLNLDSC-GIGDEGLVNLTGLC-NLKCLELSD-TQVGSSGLRHLSGLTNLES 328
L L+L C GI D+GL + C ++ L L TQ+ +GL+H+S L L +
Sbjct: 369 SSNCGKLVELDLYRCSGITDDGLAAVASGCKKIRVLNLCYCTQITDAGLKHVSALEELTN 428
Query: 329 INL----SFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLT-GLTHLDLFGA 382
+ L TGI S+ G +SL L+L + D GL AL+ + L L +
Sbjct: 429 LELRCLVRITGIGITSIA--IGCTSLIELDLKRCYSVDDAGLWALSRYSQNLRQLTISYC 486
Query: 383 RITDSGAAYLRNFKNLRSLE 402
++T G +L +LR L+
Sbjct: 487 QVTGLGLCHL--LGSLRCLQ 504
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 98/237 (41%), Gaps = 50/237 (21%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
P +++K ++ I + S L +DL+ + D+ L HL CS L L C ISD GL +
Sbjct: 308 PFISEKGLERITTLCSHLKEIDLTDCRINDTALKHLASCSELLILKLGLCSSISDEGLVY 367
Query: 102 LRG-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+ L L R + IT G+ A A G K+ L
Sbjct: 368 ISSNCGKLVELDLYRCSGITDDGLAAVA-----------------------SGCKKIRVL 404
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
N+ +C ITD+ +K +S L L +L++ C ++T GI + GC
Sbjct: 405 NLCYCTQITDAGLKHVSALEELTNLELRCLVRITGIGITSIA----------IGCT---- 450
Query: 220 CLDSLSALGSLFYLNLNRCQLSDD-GCEKFSKIGS-LKVLNLGFNEITDECLVHLKG 274
SL L+L RC DD G S+ L+ L + + ++T L HL G
Sbjct: 451 ---------SLIELDLKRCYSVDDAGLWALSRYSQNLRQLTISYCQVTGLGLCHLLG 498
>gi|428317856|ref|YP_007115738.1| Tetratricopeptide TPR_1 repeat-containing protein [Oscillatoria
nigro-viridis PCC 7112]
gi|428241536|gb|AFZ07322.1| Tetratricopeptide TPR_1 repeat-containing protein [Oscillatoria
nigro-viridis PCC 7112]
Length = 1221
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 104/309 (33%), Positives = 154/309 (49%), Gaps = 49/309 (15%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ ++L ++LS + +TD + L +NL+ L QISD ++ L GL+NLT L
Sbjct: 105 SKFTNLRKLNLSINQITD--VQPLSGLTNLRYLTLT-SNQISD--VKPLSGLTNLTLLYL 159
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N + +K + NL +L+L N IT D+
Sbjct: 160 ADNQIV---DIKPLSKFTNLRRLNLS-------------------------VNQIT--DV 189
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+PLSGLTNL+SL ++ ++++D + L GL LT L LE + + L+ L +L L
Sbjct: 190 QPLSGLTNLRSLVLNFNQISD--VKPLSGLTNLTELFLEANQIV--DVKPLAGLTNLTGL 245
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+L Q+ D S + L L L N+I D + L GLTNL L L S I D +
Sbjct: 246 SLASNQIVD--VTPLSTMTELNFLYLSGNKIAD--VKPLSGLTNLIVLFLASNQIAD--V 299
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L+GL NL L+LS Q+ + L+GLTNL +++LS I+D + LAGL L +L
Sbjct: 300 KPLSGLTNLPTLDLSRNQIADAT--PLAGLTNLTNLDLSRNQIADAT--PLAGLVYLTTL 355
Query: 354 NLDARQITD 362
+L QI D
Sbjct: 356 DLSRNQIPD 364
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 100/305 (32%), Positives = 147/305 (48%), Gaps = 32/305 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH--GGLVNL--------- 151
+ L+NLT LS RN + + + F L L L + + T + GL NL
Sbjct: 83 KTLTNLTELSLIRNQIVDIKPLSKFTNLRKL-NLSINQITDVQPLSGLTNLRYLTLTSNQ 141
Query: 152 ----KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
K L L +L + + D+KPLS TNL+ L +S +++TD + L GL L
Sbjct: 142 ISDVKPLSGLTNLTLLYLADNQIVDIKPLSKFTNLRRLNLSVNQITD--VQPLSGLTNLR 199
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L L ++ + LS L +L L L Q+ D + + + +L L+L N+I D
Sbjct: 200 SLVLNFNQIS--DVKPLSGLTNLTELFLEANQIVD--VKPLAGLTNLTGLSLASNQIVD- 254
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
+ L +T L L L I D + L+GL NL L L+ Q+ ++ LSGLTNL
Sbjct: 255 -VTPLSTMTELNFLYLSGNKIAD--VKPLSGLTNLIVLFLASNQIAD--VKPLSGLTNLP 309
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
+++LS I+D + LAGL++L +L+L QI D L L LT LDL +I D
Sbjct: 310 TLDLSRNQIADAT--PLAGLTNLTNLDLSRNQIADA--TPLAGLVYLTTLDLSRNQIPDG 365
Query: 388 GAAYL 392
A L
Sbjct: 366 EAERL 370
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 113/237 (47%), Gaps = 44/237 (18%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ ++L ++LS + +TD + L +NL+SL NF QISD ++ L GL+NLT L
Sbjct: 171 SKFTNLRRLNLSVNQITD--VQPLSGLTNLRSLVLNFN-QISD--VKPLSGLTNLTELFL 225
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC--NCITD- 170
N + +K AGL NL L L +V++ L + LN + N I D
Sbjct: 226 EANQIV---DVKPLAGLTNLTGLSL-----ASNQIVDVTPLSTMTELNFLYLSGNKIADV 277
Query: 171 -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
+D+KPLSGLTNL +L +S +++ D+ L GL LT L+L
Sbjct: 278 KPLSGLTNLIVLFLASNQIADVKPLSGLTNLPTLDLSRNQIADA--TPLAGLTNLTNLDL 335
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
+ A L+ L L L+L+R Q+ D E+ I K L N+ TDE
Sbjct: 336 SRNQIADAT--PLAGLVYLTTLDLSRNQIPDGEAERL--IQKNKQL---LNQKTDEA 385
>gi|215769345|dbj|BAH01574.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 483
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 96/385 (24%), Positives = 166/385 (43%), Gaps = 60/385 (15%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L+ L++ C+ I+D+ +K ++ + +L+ L +S + +TD+G+ + L L LL+L G
Sbjct: 4 LKELDLSRCSKISDAGIKHIASIESLEKLHVSQTGLTDNGVMAISSLINLRLLDLGGVRF 63
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT----------- 265
T L SL L L +L++ +++++G SL LN+ + +T
Sbjct: 64 TDKALRSLQVLTQLEHLDIWGSEITNEGASVLIAFTSLSFLNISWTRVTCLPILPTLRCL 123
Query: 266 --DECLVH------LKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSS 315
C +H + L +LE L + + G DE ++ +L L++S SS
Sbjct: 124 NMSNCTIHSICNGEFQVLIHLEKLIISAASFGNIDEVFSSILP-SSLTYLDMSS--CSSS 180
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLS-SLKSLNLDARQITDTGLAALT-SLTG 373
L L + NLE ++LS++ I ++ +A + +LK L+L ++T L L ++
Sbjct: 181 NLYFLGNMRNLEHLDLSYSRIISDAIEYIANIGMNLKFLSLSNSEVTSQALCVLAGTVPS 240
Query: 374 LTHLDLFGARITDSGAAY---------------------------------LRNFKNLRS 400
LT L L +I DS Y L K L S
Sbjct: 241 LTTLSLAHTKIDDSALLYISMMPSLRILNLSRTCIKGFMMENSVKVLSLSALEELKYLES 300
Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
L + L D + + L +L L L + L+D L +S + L+ L + +++
Sbjct: 301 LNLNNTQLMDDVIPPLASLRALKYLFLKSDF-LSDPALHALSSASNLIHLGFCGNILSTT 359
Query: 461 GLRHLKPLKNLRSLTLESCKVTAND 485
GLR P LR L L C + D
Sbjct: 360 GLRKFVPPATLRMLDLSGCWILTGD 384
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 102/384 (26%), Positives = 159/384 (41%), Gaps = 89/384 (23%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L+ LD + C +ISD G++H+ + +L L + +T G+ A + LINL LDL
Sbjct: 4 LKELDLSRCSKISDAGIKHIASIESLEKLHVSQT-GLTDNGVMAISSLINLRLLDLGGVR 62
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
L +L+ L +LE L+I W + IT+ L T+L L IS ++VT L
Sbjct: 63 FTDKALRSLQVLTQLEHLDI-WGSEITNEGASVLIAFTSLSFLNISWTRVT-----CLPI 116
Query: 203 LQKLTLLNLEGCPVTAAC-------------LDSLSALG------------SLFYLNLNR 237
L L LN+ C + + C + S ++ G SL YL+++
Sbjct: 117 LPTLRCLNMSNCTIHSICNGEFQVLIHLEKLIISAASFGNIDEVFSSILPSSLTYLDMSS 176
Query: 238 CQLSD----------------------DGCEKFSKIG-SLKVLNLGFNEITDECLVHLKG 274
C S+ D E + IG +LK L+L +E+T + L L G
Sbjct: 177 CSSSNLYFLGNMRNLEHLDLSYSRIISDAIEYIANIGMNLKFLSLSNSEVTSQALCVLAG 236
Query: 275 -LTNLESLNLDSCGIGDEGLV------------------------------NLTGLCNLK 303
+ +L +L+L I D L+ +L+ L LK
Sbjct: 237 TVPSLTTLSLAHTKIDDSALLYISMMPSLRILNLSRTCIKGFMMENSVKVLSLSALEELK 296
Query: 304 CLE---LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LE L++TQ+ + L+ L L+ + L +SD +L L+ S+L L +
Sbjct: 297 YLESLNLNNTQLMDDVIPPLASLRALKYLFLKSDFLSDPALHALSSASNLIHLGFCGNIL 356
Query: 361 TDTGLAALTSLTGLTHLDLFGARI 384
+ TGL L LDL G I
Sbjct: 357 STTGLRKFVPPATLRMLDLSGCWI 380
>gi|440712554|ref|ZP_20893170.1| hypothetical protein RBSWK_00227 [Rhodopirellula baltica SWK14]
gi|436442709|gb|ELP35820.1| hypothetical protein RBSWK_00227 [Rhodopirellula baltica SWK14]
Length = 341
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 115/249 (46%), Gaps = 2/249 (0%)
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
D +K LS + + L + + +D + L L L L + G A S+S L +
Sbjct: 83 DGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKAFDDAKAKSISGLPA 142
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L + ++DDG +++ L+ ++L + +TD+ L + L L LNL I
Sbjct: 143 LVAVTFQDTSVTDDGASVLAELNELQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKIT 202
Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
E ++ L L+ LEL++T G G+ ++ + LE INL T I + SL+ G +S
Sbjct: 203 GEAFEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTS 261
Query: 350 LKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
L LN+D IT+ + + SL L L L ++ L+ + L +L + GL
Sbjct: 262 LTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGL 321
Query: 409 TDAGVKHIK 417
+ K ++
Sbjct: 322 EEEPAKELE 330
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 25/226 (11%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
G ++ L L L+ L + + D+ K +SGL L ++ + VTD G + L L +
Sbjct: 108 GTVLRLAALPNLKRLRV-YGKAFDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNE 166
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK--------------- 250
L ++L PVT L S+S L L LNL +++ + E SK
Sbjct: 167 LQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKITGEAFEPISKLPLESLELAETDFGP 226
Query: 251 --------IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
I L+ +NL +I +E L +G T+L LN+D+C I +E + + L +
Sbjct: 227 EGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVSLPH 286
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
LK L L T V L L L LE++ ++ G+ + ++L +
Sbjct: 287 LKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGLEEEPAKELEAM 332
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 123/274 (44%), Gaps = 4/274 (1%)
Query: 230 LFYLNLNRCQLSD-DGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
+ ++L SD DG K S ++ L + +D ++ L L NL+ L +
Sbjct: 69 VVVVDLREVAESDLDGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKA 128
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
D +++GL L + DT V G L+ L L+ ++L + ++D +L ++ L
Sbjct: 129 FDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNELQDVSLMNSPVTDKTLASISTL 188
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
L LNL +IT ++ L L L+L G + N + L + +
Sbjct: 189 PKLTKLNLRGTKITGEAFEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTK 247
Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 467
+ + +K + +SLT+LN+ +T++ + +I L L L++ + ++ L LKP
Sbjct: 248 IDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKP 307
Query: 468 LKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 501
L+ L +L + + + K L++ PNL F
Sbjct: 308 LQELETLFVTNLGLEEEPAKELEAM-FPNLKRFE 340
Score = 42.0 bits (97), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 10/165 (6%)
Query: 52 IASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG 104
+ G+S+L+ V L S VTD L + L L+ +I+ E +
Sbjct: 153 VTDDGASVLAELNELQDVSLMNSPVTDKTLASISTLPKLTKLNLR-GTKITGEAFEPISK 211
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
L L SL + +GM A A + L K++L + L +G L LN+
Sbjct: 212 LP-LESLELAETD-FGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDN 269
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
C IT+ + + L +LK L + + V+ + LK LQ+L L
Sbjct: 270 CPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKPLQELETL 314
>gi|290972751|ref|XP_002669114.1| predicted protein [Naegleria gruberi]
gi|284082657|gb|EFC36370.1| predicted protein [Naegleria gruberi]
Length = 259
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 112/223 (50%), Gaps = 1/223 (0%)
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
+ L + +N I E +H+ + L +L++ + + +EG ++ L LKCL++ +G
Sbjct: 34 ITTLTINYNSIGVEGAMHISKMEQLTNLDICNSVLYEEGAKYISQLEQLKCLDIGSNSIG 93
Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
+G +++SG+ L +++ I + + ++ + L L + I G ++ L
Sbjct: 94 KNGAKYISGMKQLTRLDIFNNTICEEGAKSISEMKQLTHLKITFNDIGTEGAKYISQLRK 153
Query: 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
LTHLD+ I G+ Y+ L L I + + GVKHI +++ LT L++ N +
Sbjct: 154 LTHLDISSNDIGAKGSKYISEMNQLTILNIYNNDIGNEGVKHISEMNQLTRLDIGDN-EI 212
Query: 434 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
+ + ++ ISG+ L +L++S + I G + L +K L L
Sbjct: 213 SAEGVKYISGMKQLTNLDISWNNIGDEGAQFLSQMKQLIYLEF 255
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 114/205 (55%), Gaps = 4/205 (1%)
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
+KG+T L ++N +S G+ EG ++++ + L L++ ++ + G +++S L L+ +++
Sbjct: 31 MKGITTL-TINYNSIGV--EGAMHISKMEQLTNLDICNSVLYEEGAKYISQLEQLKCLDI 87
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
I + ++G+ L L++ I + G +++ + LTHL + I GA Y
Sbjct: 88 GSNSIGKNGAKYISGMKQLTRLDIFNNTICEEGAKSISEMKQLTHLKITFNDIGTEGAKY 147
Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
+ + L L+I + G K+I +++ LT+LN+ N ++ ++ ++ IS + L L+
Sbjct: 148 ISQLRKLTHLDISSNDIGAKGSKYISEMNQLTILNIYNN-DIGNEGVKHISEMNQLTRLD 206
Query: 452 VSNSRITSAGLRHLKPLKNLRSLTL 476
+ ++ I++ G++++ +K L +L +
Sbjct: 207 IGDNEISAEGVKYISGMKQLTNLDI 231
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 132/252 (52%), Gaps = 15/252 (5%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAF-AGLINLVKLDLERCTRIHGGLVNLKGLM---KLESL 160
L N+T+L F+R + AF L+NL+K + T I+ + ++G M K+E L
Sbjct: 8 LQNVTNLLFKRE-------IGAFDYKLLNLMK-GITTLT-INYNSIGVEGAMHISKMEQL 58
Query: 161 -NIKWCNCI-TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
N+ CN + + K +S L LK L I + + +G Y+ G+++LT L++ +
Sbjct: 59 TNLDICNSVLYEEGAKYISQLEQLKCLDIGSNSIGKNGAKYISGMKQLTRLDIFNNTICE 118
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
S+S + L +L + + +G + S++ L L++ N+I + ++ + L
Sbjct: 119 EGAKSISEMKQLTHLKITFNDIGTEGAKYISQLRKLTHLDISSNDIGAKGSKYISEMNQL 178
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
LN+ + IG+EG+ +++ + L L++ D ++ + G++++SG+ L ++++S+ I D
Sbjct: 179 TILNIYNNDIGNEGVKHISEMNQLTRLDIGDNEISAEGVKYISGMKQLTNLDISWNNIGD 238
Query: 339 GSLRKLAGLSSL 350
+ L+ + L
Sbjct: 239 EGAQFLSQMKQL 250
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 112/227 (49%), Gaps = 6/227 (2%)
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
L+ +TNL L G D L+NL + + L ++ +G G H+S + L ++++
Sbjct: 8 LQNVTNL--LFKREIGAFDYKLLNL--MKGITTLTINYNSIGVEGAMHISKMEQLTNLDI 63
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
+ + + + ++ L LK L++ + I G ++ + LT LD+F I + GA
Sbjct: 64 CNSVLYEEGAKYISQLEQLKCLDIGSNSIGKNGAKYISGMKQLTRLDIFNNTICEEGAKS 123
Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
+ K L L+I + G K+I L LT L++S N ++ K + IS + L LN
Sbjct: 124 ISEMKQLTHLKITFNDIGTEGAKYISQLRKLTHLDISSN-DIGAKGSKYISEMNQLTILN 182
Query: 452 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNL 497
+ N+ I + G++H+ + L L + +++A +K + + L NL
Sbjct: 183 IYNNDIGNEGVKHISEMNQLTRLDIGDNEISAEGVKYISGMKQLTNL 229
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 110/228 (48%), Gaps = 3/228 (1%)
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
+KG+ LT+ N V A +S + L L++ L ++G + S++ LK L++
Sbjct: 31 MKGITTLTI-NYNSIGVEGAM--HISKMEQLTNLDICNSVLYEEGAKYISQLEQLKCLDI 87
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
G N I ++ G+ L L++ + I +EG +++ + L L+++ +G+ G ++
Sbjct: 88 GSNSIGKNGAKYISGMKQLTRLDIFNNTICEEGAKSISEMKQLTHLKITFNDIGTEGAKY 147
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
+S L L +++S I + ++ ++ L LN+ I + G+ ++ + LT LD+
Sbjct: 148 ISQLRKLTHLDISSNDIGAKGSKYISEMNQLTILNIYNNDIGNEGVKHISEMNQLTRLDI 207
Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
I+ G Y+ K L +L+I + D G + + + L L
Sbjct: 208 GDNEISAEGVKYISGMKQLTNLDISWNNIGDEGAQFLSQMKQLIYLEF 255
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 104/210 (49%), Gaps = 2/210 (0%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
G H+ + LT+L N+ + +G K + L L LD+ + G + G+ +L
Sbjct: 48 GAMHISKMEQLTNLDIC-NSVLYEEGAKYISQLEQLKCLDIGSNSIGKNGAKYISGMKQL 106
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
L+I + N I + K +S + L L+I+ + + G Y+ L+KLT L++ +
Sbjct: 107 TRLDI-FNNTICEEGAKSISEMKQLTHLKITFNDIGTEGAKYISQLRKLTHLDISSNDIG 165
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
A +S + L LN+ + ++G + S++ L L++G NEI+ E + ++ G+
Sbjct: 166 AKGSKYISEMNQLTILNIYNNDIGNEGVKHISEMNQLTRLDIGDNEISAEGVKYISGMKQ 225
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
L +L++ IGDEG L+ + L LE
Sbjct: 226 LTNLDISWNNIGDEGAQFLSQMKQLIYLEF 255
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 111/233 (47%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D K L+ + + +L I+ + + G ++ +++LT L++ + +S L L
Sbjct: 24 DYKLLNLMKGITTLTINYNSIGVEGAMHISKMEQLTNLDICNSVLYEEGAKYISQLEQLK 83
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
L++ + +G + S + L L++ N I +E + + L L + IG E
Sbjct: 84 CLDIGSNSIGKNGAKYISGMKQLTRLDIFNNTICEEGAKSISEMKQLTHLKITFNDIGTE 143
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
G ++ L L L++S +G+ G +++S + L +N+ I + ++ ++ ++ L
Sbjct: 144 GAKYISQLRKLTHLDISSNDIGAKGSKYISEMNQLTILNIYNNDIGNEGVKHISEMNQLT 203
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
L++ +I+ G+ ++ + LT+LD+ I D GA +L K L LE
Sbjct: 204 RLDIGDNEISAEGVKYISGMKQLTNLDISWNNIGDEGAQFLSQMKQLIYLEFI 256
>gi|72385461|ref|XP_846398.1| leucine-rich repeat protein (LRRP) [Trypanosoma brucei TREU927]
gi|25956236|emb|CAB95328.2| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 1448
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 112/405 (27%), Positives = 177/405 (43%), Gaps = 56/405 (13%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
++A A ++ L KL L CT I G+ L L +L+ L++ N +S ++ L +
Sbjct: 531 VEALANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNES-LRSLCLSQTVV 589
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
SL +S C K+T+ ++++ L+ L LNL C A ++L L L L+ ++D
Sbjct: 590 SLNLSHCWKMTN--VSHISSLEALNELNLSNCFGINAGWEALEKLQQLHVAILSNTHITD 647
Query: 243 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV---NLTG 298
FS +L L+L F N++ D + L +T LE LNLDSC +GL L
Sbjct: 648 RDISHFSNCKNLITLDLSFCNKLLD--VTALSNITTLEELNLDSCSNIRKGLSVLGELPR 705
Query: 299 LC--NLKCLELSDTQV-----GSSGLR-------------HLSGLTNLESINLSFTGISD 338
LC N+K ++L D+ + G+S +R LS L LE +NL +
Sbjct: 706 LCVLNIKGVQLEDSVIVSLGNGNSFVRLSLENCKGFGDVAPLSNLVTLEELNLHYCDKVT 765
Query: 339 GSLRKLAGLSSLKSLNLDARQITD------------------------TGLAALTSLTGL 374
+ L L L+ L+L Q+ D T ++A+ SLT L
Sbjct: 766 SGMGTLGRLPQLRVLDLGRTQVDDNSLENICTCSSPLVSLNLSNCKKITSISAIASLTAL 825
Query: 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
L++ SG LR + D V+H+ + SL LNL+ ++T
Sbjct: 826 EELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRTNDENVRHVSECKSLNTLNLAFCKDIT 885
Query: 435 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 479
D T +S +T L LN+ G+ L L R L+++ C
Sbjct: 886 DVT--ALSKITMLEELNLDCCHNIRKGIETLGTLPKARILSMKEC 928
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 129/507 (25%), Positives = 211/507 (41%), Gaps = 77/507 (15%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L G+N W + Q L LS + +TD + H +C NL +LD +FC
Sbjct: 610 ALNELNLSNCFGINAGWEALEKLQ--QLHVAILSNTHITDRDISHFSNCKNLITLDLSFC 667
Query: 92 IQISDGGLEHLRGLSNLTSLS-------------------FRRNNAITAQGMKAFAGLI- 131
++ D + LSN+T+L R + +G++ +I
Sbjct: 668 NKLLD-----VTALSNITTLEELNLDSCSNIRKGLSVLGELPRLCVLNIKGVQLEDSVIV 722
Query: 132 ------NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+ V+L LE C + G + L L+ LE LN+ +C+ +T S M L L L+ L
Sbjct: 723 SLGNGNSFVRLSLENC-KGFGDVAPLSNLVTLEELNLHYCDKVT-SGMGTLGRLPQLRVL 780
Query: 186 QISCSKVTD------------------------SGIAYLKGLQKLTLLNLEGCPVTAACL 221
+ ++V D + I+ + L L LN++ C +
Sbjct: 781 DLGRTQVDDNSLENICTCSSPLVSLNLSNCKKITSISAIASLTALEELNIDNCCNVTSGW 840
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLES 280
+ L L L+ + +D+ S+ SL LNL F +ITD + L +T LE
Sbjct: 841 NVFGTLHQLRVATLSNTRTNDENVRHVSECKSLNTLNLAFCKDITD--VTALSKITMLEE 898
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG- 339
LNLD C +G+ L L + L + + +G + S L N +S+ S G
Sbjct: 899 LNLDCCHNIRKGIETLGTLPKARILSMKECYMGDGYAQQCSILGNSKSLVKLNLERSRGR 958
Query: 340 -SLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF-- 395
S++ L+ +++L+ L LD AR++ + S + L L + + TD +N
Sbjct: 959 ISVKALSNVATLEELVLDHARKV-----CCIPSFSCLPRLRVLNLKYTDINGDVTKNISE 1013
Query: 396 -KNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
K+LRSL + +TD V +N CN K E + L L +S
Sbjct: 1014 SKSLRSLNLSHCKWVTDISVLSSLLTLEELNVNC---CNGIRKGWESLGKLPLLRVAILS 1070
Query: 454 NSRITSAGLRHLKPLKNLRSLTLESCK 480
+++IT+ + L K L L C+
Sbjct: 1071 DTKITAKDIACLSSCKKLVKLKFFQCE 1097
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 114/414 (27%), Positives = 183/414 (44%), Gaps = 36/414 (8%)
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
HL + L L+ +T ++ + L NL L+L + + KL L
Sbjct: 251 HLFNIGTLEELAITDTMQLT--NIRGISRLTNLKCLELNSTNIDDSCVEEISACAKLSKL 308
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
I CN ITD+ P+S L L+ L +S +T GI L L +L +L+L G PV C
Sbjct: 309 CISKCNNITDA--TPISQLAALEELNLSNCHIT-KGIGTLGMLLRLRMLDLSGVPVEDNC 365
Query: 221 LDSLSALGSLFYLNLN-RCQLSD---------------DGCEKFSK-------IGSLKVL 257
L L GSL LN++ R QL+D +GC + ++ + L+VL
Sbjct: 366 LKDLCDCGSLERLNISYRIQLTDINPLSNATAIEELNLNGCRRITRGIGVVWALPKLRVL 425
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
++ +++ L + L ++LD+C G GD L L+ + L+ L + SG
Sbjct: 426 HMKDVHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTL--LSSIVTLEELNIQKCADIISG 483
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLT 375
+ L L L +N+ IS + SL LN+++ IT + + AL ++ L
Sbjct: 484 VGCLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLNMES--ITGLSNVEALANILTLE 541
Query: 376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
L L G D+G L N L+ L++ G + ++ + ++ LNLS +T+
Sbjct: 542 KLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSLNLSHCWKMTN 601
Query: 436 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
+ IS L L LN+SN +AG L+ L+ L L + +T DI
Sbjct: 602 --VSHISSLEALNELNLSNCFGINAGWEALEKLQQLHVAILSNTHITDRDISHF 653
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 148/549 (26%), Positives = 222/549 (40%), Gaps = 136/549 (24%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------GGLEHL---------RGLSN 107
LS + D + H+ +C +L +L+ FC I+D LE L +G+
Sbjct: 854 LSNTRTNDENVRHVSECKSLNTLNLAFCKDITDVTALSKITMLEELNLDCCHNIRKGIET 913
Query: 108 LTSLSFRRNNAIT--------AQGMKAFAGLINLVKLDLERCT-RI-------------- 144
L +L R ++ AQ +LVKL+LER RI
Sbjct: 914 LGTLPKARILSMKECYMGDGYAQQCSILGNSKSLVKLNLERSRGRISVKALSNVATLEEL 973
Query: 145 ---HGGLV----NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSG 196
H V + L +L LN+K+ + I K +S +L+SL +S C VTD
Sbjct: 974 VLDHARKVCCIPSFSCLPRLRVLNLKYTD-INGDVTKNISESKSLRSLNLSHCKWVTDIS 1032
Query: 197 IAY-------------------LKGLQKLTLLN---LEGCPVTAACLDSLSALGSLFYLN 234
+ + L KL LL L +TA + LS+ L L
Sbjct: 1033 VLSSLLTLEELNVNCCNGIRKGWESLGKLPLLRVAILSDTKITAKDIACLSSCKKLVKLK 1092
Query: 235 LNRCQ-LSD-------------------DGCEKFSKIGSLKVL------NLGFNEITDEC 268
+C+ LSD DG + + +G+L L N+ ++I+ E
Sbjct: 1093 FFQCEKLSDVTVVYKIQSLEELIVTSCSDGLKGLNALGTLPRLRFHHLRNVRGSDISVES 1152
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE---LSDTQVGSSGLRHLSGLTN 325
+ K L L +G+E L ++T L N+ LE L D + G+ L L
Sbjct: 1153 IGTSKSLVRLH------IEVGEE-LTDITPLSNITSLEELSLRDYRKPPEGVGTLGKLPR 1205
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARI 384
L+S++L + ISD +L + S+ SLNLD+ ++TD ++ +++LT L L+L G
Sbjct: 1206 LKSLDLGLSRISDSTLYCICLSRSITSLNLDSSWKLTD--ISHISNLTALEELNLGGCYY 1263
Query: 385 TDSGAAYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD------- 435
SG L LR +LE D G +I L LNL + C++TD
Sbjct: 1264 ITSGWEALSELPRLRVLNLEFTRATTRDGGY-YISRCKYLVTLNL-ELCDMTDASCLANI 1321
Query: 436 KTL---------ELISGLTGLVS------LNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
KTL EL G + L + LN+ S IT LR ++P + L L C
Sbjct: 1322 KTLEELHIGGCDELTQGFSALFTLPQLRILNLICSLITDEDLREIQPPHTIEELNLSYC- 1380
Query: 481 VTANDIKRL 489
V NDI L
Sbjct: 1381 VELNDITPL 1389
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 113/444 (25%), Positives = 177/444 (39%), Gaps = 89/444 (20%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
SG V D+ L L DC +L+ L+ ++ IQ++D + LSN T++
Sbjct: 357 SGVPVEDNCLKDLCDCGSLERLNISYRIQLTD-----INPLSNATAIE------------ 399
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC------------------- 165
+L+L C RI G+ + L KL L++K
Sbjct: 400 ----------ELNLNGCRRITRGIGVVWALPKLRVLHMKDVHLSEPSLDSVGTGGPLVKV 449
Query: 166 ---NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
NC DM LS + L+ L I SG+ L L L +LN++ +++
Sbjct: 450 SLDNCAGFGDMTLLSSIVTLEELNIQKCADIISGVGCLGTLPYLRVLNIKEAHISSLDFT 509
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
+ A SL LN+ E + + +++ L + LE L+
Sbjct: 510 GIGASKSLLQLNM----------ESITGLSNVEA---------------LANILTLEKLS 544
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS----FTGISD 338
L C D G+ L L LK L+LS T + LR L + S+NLS T +S
Sbjct: 545 LHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSLNLSHCWKMTNVS- 603
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
++ L +L LNL + G AL L L L ITD ++ N KNL
Sbjct: 604 ----HISSLEALNELNLSNCFGINAGWEALEKLQQLHVAILSNTHITDRDISHFSNCKNL 659
Query: 399 RSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456
+L++ C L + +I L L L +C+ K L ++ L L LN+ +
Sbjct: 660 ITLDLSFCNKLLDVTALSNITTLEELNL----DSCSNIRKGLSVLGELPRLCVLNIKGVQ 715
Query: 457 ITSAGLRHLKPLKNLRSLTLESCK 480
+ + + L + L+LE+CK
Sbjct: 716 LEDSVIVSLGNGNSFVRLSLENCK 739
>gi|125536975|gb|EAY83463.1| hypothetical protein OsI_38675 [Oryza sativa Indica Group]
Length = 702
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 150/540 (27%), Positives = 225/540 (41%), Gaps = 111/540 (20%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS------------------------- 67
++ +CL + GV + +D + + L +VDLS
Sbjct: 104 VRRVCLARASGVGWRGLDALVAACPRLEAVDLSHCVGAGDREAAALAAATGLRELSLEKC 163
Query: 68 -DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLE-------HLRGLS----NLTSLSFR 114
VTD GL + C L+ L +C +ISD G++ LR L L L
Sbjct: 164 LGVTDMGLAKVVVGCPRLEKLSLKWCREISDIGIDLLSKKCHDLRSLDISYLKLLGLGMI 223
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV------------NLKGLMKLESLNI 162
+ T + +K V D+E GL ++ L KLE L +
Sbjct: 224 CGSTATNKAVKCDFDSSLWVDFDMENVQSSELGLTGWLILVGNESLRSISSLEKLEELAM 283
Query: 163 KWCNCITDSDMKPL-SGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAA 219
C+CI D ++ L G +L+S+ +S C VT G+A L G L LN AA
Sbjct: 284 VCCSCIDDDGLELLGKGSNSLQSVDVSRCDHVTSQGLASLIDGHNFLQKLN-------AA 336
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
DSL + F NL + L D +L VL L E+ L+ + G NL
Sbjct: 337 --DSLHEMRQSFLSNLAK--LKD----------TLTVLRLDGLEVASSVLLAIGGCNNLV 382
Query: 280 SLNLDSC-GIGDEGLVNLTGLC-NLKCLEL--------------------------SDTQ 311
+ L C G+ DEG+ +L C +L+ ++L S +
Sbjct: 383 EIGLSKCNGVTDEGISSLVTQCSHLRVIDLTCCNSLQQCPDSIAENCKMVERLRLESCSS 442
Query: 312 VGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALT 369
+ GL ++ NL+ I+L+ G++D +LR LA S L L L I+D GLA ++
Sbjct: 443 ISEKGLEQIATSCPNLKEIDLTDCGVNDAALRPLAKCSELLVLKLGLCSSISDKGLAFIS 502
Query: 370 SLTG-LTHLDLFGAR-ITDSGAAYLRN-FKNLRSLEICG-GGLTDAGVKHIKDLSSLTLL 425
S G L LDL+ ITD G A L N K ++ L +C +TD G+ H+ L LT L
Sbjct: 503 SSCGKLIELDLYRCNSITDDGLAALANGCKKIKMLNLCYCNKITDTGLGHLGSLEELTNL 562
Query: 426 NLSQNCNLTDKTLELIS-GLTGLVSLNVSNSR-ITSAGLRHLKPLK-NLRSLTLESCKVT 482
L +T + ++ G L+ +++ + AGL L NLR LT+ C+VT
Sbjct: 563 ELRCLVRITGIGISSVAIGCKNLIEIDLKRCYSVDDAGLWALARYALNLRQLTISYCQVT 622
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 107/230 (46%), Gaps = 32/230 (13%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL- 102
+++K ++ IA+ +L +DL+ V D+ L L CS L L C ISD GL +
Sbjct: 443 ISEKGLEQIATSCPNLKEIDLTDCGVNDAALRPLAKCSELLVLKLGLCSSISDKGLAFIS 502
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L L R N+IT G+ A A G K++ LN+
Sbjct: 503 SSCGKLIELDLYRCNSITDDGLAALA-----------------------NGCKKIKMLNL 539
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLK-GLQKLTLLNLEGC-PVTAA 219
+CN ITD+ + L L L +L++ C ++T GI+ + G + L ++L+ C V A
Sbjct: 540 CYCNKITDTGLGHLGSLEELTNLELRCLVRITGIGISSVAIGCKNLIEIDLKRCYSVDDA 599
Query: 220 CLDSLSALG-SLFYLNLNRCQLSDDG-CEKFSKIGSL---KVLNLGFNEI 264
L +L+ +L L ++ CQ++ G C S + L K+++L + I
Sbjct: 600 GLWALARYALNLRQLTISYCQVTGLGLCHLLSSLRCLQDVKMVHLSWVSI 649
>gi|413916550|gb|AFW56482.1| hypothetical protein ZEAMMB73_356315 [Zea mays]
Length = 660
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 141/492 (28%), Positives = 223/492 (45%), Gaps = 62/492 (12%)
Query: 34 QDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT-DSGLIHLKDCSNLQSLDFNFCI 92
+ +CL + GV + ++ + + L +VDLS D L S L+ L + C+
Sbjct: 108 RSVCLARANGVGWRGLEALVAACPKLAAVDLSHCVTAGDREAAALAAASELRDLRLDKCL 167
Query: 93 QISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDLERCTRIHGGLVN 150
++D GL + G L LS + I+ G+ A L L++ +G L +
Sbjct: 168 AVTDMGLAKVAVGCPKLEKLSLKWCREISDIGIDLLAKKCPELRSLNISYLKVGNGSLGS 227
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYL----KGLQ 204
+ L +LE L + C+ I D ++ LS G +L+S+ +S C VT G+A L LQ
Sbjct: 228 ISSLERLEELAMVCCSGIDDEGLELLSKGSDSLQSVDVSRCDHVTSEGLASLIDGRNFLQ 287
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC------------QLSD-------DGC 245
KL AA D L +G F L R ++SD + C
Sbjct: 288 KLY----------AA--DCLHEIGQRFLSKLARLKETLTLLKLDGLEVSDSLLQAIGESC 335
Query: 246 EKFSKIGSLK---VLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN 301
K +IG K V + G + + C ++L +++L C I + L ++ C
Sbjct: 336 NKLVEIGLSKCSGVTDGGISSLVARC-------SDLRTIDLTCCNLITNNALDSIADNCK 388
Query: 302 -LKCLEL-SDTQVGSSGLRHLSGL-TNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-A 357
L+CL L S + + GL ++ NL+ I+L+ G+ D +L+ LA S L+ L L
Sbjct: 389 MLECLRLESCSLINEKGLERITTCCPNLKEIDLTDCGVDDAALQHLAKCSELRILKLGLC 448
Query: 358 RQITDTGLAALTSLTG-LTHLDLFGAR-ITDSGAAYLRN-FKNLRSLEIC-GGGLTDAGV 413
I+D G+A ++S G L LDL+ ITD G A L N K ++ L +C +TD G+
Sbjct: 449 SSISDRGIAFISSNCGKLVELDLYRCNSITDDGLAALANGCKRIKLLNLCYCNKITDTGL 508
Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSNSR-ITSAGLRHLKPLK-N 470
H+ L LT L L +T + ++ G L+ L++ + AGL L N
Sbjct: 509 GHLGSLEELTNLELRCLVRVTGIGISSVAIGCKNLIELDLKRCYSVDDAGLWALARYALN 568
Query: 471 LRSLTLESCKVT 482
LR LT+ C+VT
Sbjct: 569 LRQLTISYCQVT 580
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 113/441 (25%), Positives = 181/441 (41%), Gaps = 73/441 (16%)
Query: 80 CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
C L ++D + C+ D L S L L + A+T G+ A
Sbjct: 130 CPKLAAVDLSHCVTAGDREAAALAAASELRDLRLDKCLAVTDMGLAKVA----------- 178
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQISCSKVTDSGIA 198
G KLE L++KWC I+D + L+ L+SL IS KV + +
Sbjct: 179 ------------VGCPKLEKLSLKWCREISDIGIDLLAKKCPELRSLNISYLKVGNGSLG 226
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVL 257
+ L++L L + C + D+G E SK SL+ +
Sbjct: 227 SISSLERLEELAMVCCS-----------------------GIDDEGLELLSKGSDSLQSV 263
Query: 258 NLG-FNEITDECLVHL-KGLTNLESLNLDSC--GIGDEGLVNLTGLCNLKC------LEL 307
++ + +T E L L G L+ L C IG L L L LE+
Sbjct: 264 DVSRCDHVTSEGLASLIDGRNFLQKLYAADCLHEIGQRFLSKLARLKETLTLLKLDGLEV 323
Query: 308 SDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKL-AGLSSLKSLNLDA-RQITDTG 364
SD+ + + G L I LS +G++DG + L A S L++++L IT+
Sbjct: 324 SDSLLQAIG----ESCNKLVEIGLSKCSGVTDGGISSLVARCSDLRTIDLTCCNLITNNA 379
Query: 365 LAALT-SLTGLTHLDLFGAR-ITDSGAAYLRNF-KNLRSLEICGGGLTDAGVKHIKDLSS 421
L ++ + L L L I + G + NL+ +++ G+ DA ++H+ S
Sbjct: 380 LDSIADNCKMLECLRLESCSLINEKGLERITTCCPNLKEIDLTDCGVDDAALQHLAKCSE 439
Query: 422 LTLLNLSQNCNLTDKTLELISGLTG-LVSLNVSN-SRITSAGLRHLK-PLKNLRSLTLES 478
L +L L +++D+ + IS G LV L++ + IT GL L K ++ L L
Sbjct: 440 LRILKLGLCSSISDRGIAFISSNCGKLVELDLYRCNSITDDGLAALANGCKRIKLLNLCY 499
Query: 479 C-KVTANDIKRLQS-RDLPNL 497
C K+T + L S +L NL
Sbjct: 500 CNKITDTGLGHLGSLEELTNL 520
>gi|290987592|ref|XP_002676506.1| predicted protein [Naegleria gruberi]
gi|284090109|gb|EFC43762.1| predicted protein [Naegleria gruberi]
Length = 259
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 123/256 (48%), Gaps = 8/256 (3%)
Query: 179 LTNLKSLQISCSKVT----DSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
L N+ +L+ +CS+ DSGI +K L KL + A C + L SL
Sbjct: 6 LPNIVTLEWTCSRYQKFTFDSGIFGTMKQLTKLKIGENNIGDQNAKCFIEMKQLTSL--- 62
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
++ +S +G + ++ L LN+ N + + ++ L L +LN+ IG++G
Sbjct: 63 DVYHNNISKEGAKFIGEMTQLTYLNVNTNNVGELGAKYISKLNQLITLNIGLNSIGEQGA 122
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
++ + L L + +G+ G H+S + L S+N G+ D ++ ++ L+ L L
Sbjct: 123 EYISEMKQLTDLNIYSCNIGNRGANHISRMKQLISLNTGRNGLDDEGVKYISELNQLNFL 182
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
N+ I++ GL ++ + + HLD+ I D GA + K L L+I + + G
Sbjct: 183 NIADSNISEEGLNYISGMKQIIHLDISNNFIDDEGAEIISRMKQLTRLDISNNSIGEEGT 242
Query: 414 KHIKDLSSLTLLNLSQ 429
K+I ++ LT L++ +
Sbjct: 243 KYISEMKKLTYLDIGE 258
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 101/202 (50%), Gaps = 1/202 (0%)
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
+ L L + IGD+ + L L++ + G + + +T L +N++
Sbjct: 32 MKQLTKLKIGENNIGDQNAKCFIEMKQLTSLDVYHNNISKEGAKFIGEMTQLTYLNVNTN 91
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
+ + + ++ L+ L +LN+ I + G ++ + LT L+++ I + GA ++
Sbjct: 92 NVGELGAKYISKLNQLITLNIGLNSIGEQGAEYISEMKQLTDLNIYSCNIGNRGANHISR 151
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
K L SL GL D GVK+I +L+ L LN++ + N++++ L ISG+ ++ L++SN
Sbjct: 152 MKQLISLNTGRNGLDDEGVKYISELNQLNFLNIA-DSNISEEGLNYISGMKQIIHLDISN 210
Query: 455 SRITSAGLRHLKPLKNLRSLTL 476
+ I G + +K L L +
Sbjct: 211 NFIDDEGAEIISRMKQLTRLDI 232
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 100/214 (46%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N I D + K + L SL + + ++ G ++ + +LT LN+ V +S
Sbjct: 43 NNIGDQNAKCFIEMKQLTSLDVYHNNISKEGAKFIGEMTQLTYLNVNTNNVGELGAKYIS 102
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L L LN+ + + G E S++ L LN+ I + H+ + L SLN
Sbjct: 103 KLNQLITLNIGLNSIGEQGAEYISEMKQLTDLNIYSCNIGNRGANHISRMKQLISLNTGR 162
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
G+ DEG+ ++ L L L ++D+ + GL ++SG+ + +++S I D ++
Sbjct: 163 NGLDDEGVKYISELNQLNFLNIADSNISEEGLNYISGMKQIIHLDISNNFIDDEGAEIIS 222
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
+ L L++ I + G ++ + LT+LD+
Sbjct: 223 RMKQLTRLDISNNSIGEEGTKYISEMKKLTYLDI 256
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 72/147 (48%), Gaps = 1/147 (0%)
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
I D + + + L SL++ I+ G + +T LT+L++ + + GA Y+
Sbjct: 45 IGDQNAKCFIEMKQLTSLDVYHNNISKEGAKFIGEMTQLTYLNVNTNNVGELGAKYISKL 104
Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 455
L +L I + + G ++I ++ LT LN+ +CN+ ++ IS + L+SLN +
Sbjct: 105 NQLITLNIGLNSIGEQGAEYISEMKQLTDLNIY-SCNIGNRGANHISRMKQLISLNTGRN 163
Query: 456 RITSAGLRHLKPLKNLRSLTLESCKVT 482
+ G++++ L L L + ++
Sbjct: 164 GLDDEGVKYISELNQLNFLNIADSNIS 190
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 6/133 (4%)
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421
D+G+ ++ LT L + I D A K L SL++ ++ G K I +++
Sbjct: 25 DSGI--FGTMKQLTKLKIGENNIGDQNAKCFIEMKQLTSLDVYHNNISKEGAKFIGEMTQ 82
Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
LT LN++ N N+ + + IS L L++LN+ + I G ++ +K L L + SC +
Sbjct: 83 LTYLNVNTN-NVGELGAKYISKLNQLITLNIGLNSIGEQGAEYISEMKQLTDLNIYSCNI 141
Query: 482 ---TANDIKRLQS 491
AN I R++
Sbjct: 142 GNRGANHISRMKQ 154
>gi|417302467|ref|ZP_12089567.1| conserved hypothetical protein, secreted [Rhodopirellula baltica
WH47]
gi|327541207|gb|EGF27751.1| conserved hypothetical protein, secreted [Rhodopirellula baltica
WH47]
Length = 341
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 115/249 (46%), Gaps = 2/249 (0%)
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
D +K LS + + L + + +D + L L L L + G A S+S L +
Sbjct: 83 DGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKAFDDAKAKSISGLPA 142
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L + ++DDG +++ L+ ++L + +TD+ L + L L LNL I
Sbjct: 143 LVAVTFQDTSVTDDGASVLAELNELQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKIT 202
Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
E ++ L L+ LEL++T G G+ ++ + LE INL T I + SL+ G +S
Sbjct: 203 GEAFEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTS 261
Query: 350 LKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
L LN+D IT+ + + SL L L L ++ L+ + L +L + GL
Sbjct: 262 LTVLNVDNCPAITEEAIPVIISLPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGL 321
Query: 409 TDAGVKHIK 417
+ K ++
Sbjct: 322 EEEPAKELE 330
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 25/226 (11%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
G ++ L L L+ L + + D+ K +SGL L ++ + VTD G + L L +
Sbjct: 108 GTVLRLAALPNLKRLRV-YGKAFDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNE 166
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK--------------- 250
L ++L PVT L S+S L L LNL +++ + E SK
Sbjct: 167 LQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKITGEAFEPISKLPLESLELAETDFGP 226
Query: 251 --------IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
I L+ +NL +I +E L +G T+L LN+D+C I +E + + L +
Sbjct: 227 EGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIISLPH 286
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
LK L L T V L L L LE++ ++ G+ + ++L +
Sbjct: 287 LKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGLEEEPAKELEAM 332
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 123/274 (44%), Gaps = 4/274 (1%)
Query: 230 LFYLNLNRCQLSD-DGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
+ ++L SD DG K S ++ L + +D ++ L L NL+ L +
Sbjct: 69 VVVVDLREVAESDLDGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKA 128
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
D +++GL L + DT V G L+ L L+ ++L + ++D +L ++ L
Sbjct: 129 FDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNELQDVSLMNSPVTDKTLASISTL 188
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
L LNL +IT ++ L L L+L G + N + L + +
Sbjct: 189 PKLTKLNLRGTKITGEAFEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTK 247
Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 467
+ + +K + +SLT+LN+ +T++ + +I L L L++ + ++ L LKP
Sbjct: 248 IDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIISLPHLKLLHLGKTSVSPDALPQLKP 307
Query: 468 LKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 501
L+ L +L + + + K L++ PNL F
Sbjct: 308 LQELETLFVTNLGLEEEPAKELEAM-FPNLKRFE 340
Score = 41.6 bits (96), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 10/165 (6%)
Query: 52 IASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG 104
+ G+S+L+ V L S VTD L + L L+ +I+ E +
Sbjct: 153 VTDDGASVLAELNELQDVSLMNSPVTDKTLASISTLPKLTKLNLR-GTKITGEAFEPISK 211
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
L L SL + +GM A A + L K++L + L +G L LN+
Sbjct: 212 LP-LESLELAETD-FGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDN 269
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
C IT+ + + L +LK L + + V+ + LK LQ+L L
Sbjct: 270 CPAITEEAIPVIISLPHLKLLHLGKTSVSPDALPQLKPLQELETL 314
>gi|290989399|ref|XP_002677325.1| predicted protein [Naegleria gruberi]
gi|284090932|gb|EFC44581.1| predicted protein [Naegleria gruberi]
Length = 412
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 88/327 (26%), Positives = 157/327 (48%), Gaps = 36/327 (11%)
Query: 94 ISDGGLEHLRGL--SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
+SD ++H G S++ L F + MK ++ + NL L +++C V L
Sbjct: 64 VSDK-IDHKWGFTGSSIKKLKFSHLTIKSTDFMKIYSNMKNLKSLSMKKCRIEKKDFVYL 122
Query: 152 KGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
+ +LESLNI + N + K + LTNLK D GI+
Sbjct: 123 MKIKQLESLNIIPHFSNITNEEICKICTNLTNLK----------DFGIS----------- 161
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
G + L ++ + SL L+++ +L ++ ++ K+ L LN+G N L
Sbjct: 162 ---GMSLQYKTLQYITNMKSLTSLDISNTELYEEYLQEIGKMTHLTSLNIGDNGTIP--L 216
Query: 270 VHLKGLTNLESLNLDSCGI--GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNL 326
++K L L+SLN++ I G L L L +L L +S + + GL++L +L
Sbjct: 217 QYIKSLAGLKSLNINGRFINNGFYELRELKDLHSLTELSVSHNTIKTKGLKYLIDTFPDL 276
Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
S+++S+ G+ GS++K+ L L L++ I+D L +T L LT L++ +ITD
Sbjct: 277 TSLDISYNGL--GSIKKIRKLKHLTKLDISNNSISDQDLIYITCLPQLTKLNISSNQITD 334
Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGV 413
+GA + ++LR++++ +T+ V
Sbjct: 335 NGALLFASMESLRNIDVRFNDITNDKV 361
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 13/206 (6%)
Query: 302 LKCLELSDTQVGSSG-LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-- 358
+K L+ S + S+ ++ S + NL+S+++ I L + L+SLN+
Sbjct: 79 IKKLKFSHLTIKSTDFMKIYSNMKNLKSLSMKKCRIEKKDFVYLMKIKQLESLNIIPHFS 138
Query: 359 QITDTGLAAL-TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
IT+ + + T+LT L + G + Y+ N K+L SL+I L + ++ I
Sbjct: 139 NITNEEICKICTNLTNLKDFGISGMSLQYKTLQYITNMKSLTSLDISNTELYEEYLQEIG 198
Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 477
++ LT LN+ N + L+ I L GL SLN+ N R + G L+ LK+L SLT
Sbjct: 199 KMTHLTSLNIGDNGTI---PLQYIKSLAGLKSLNI-NGRFINNGFYELRELKDLHSLT-- 252
Query: 478 SCKVTANDIKRLQSRDLPNLVSFRPE 503
V+ N IK ++ L L+ P+
Sbjct: 253 ELSVSHNTIK---TKGLKYLIDTFPD 275
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 115/241 (47%), Gaps = 38/241 (15%)
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL--DSCGIGDEGLVNL-T 297
S D + +S + +LK L++ I + V+L + LESLN+ I +E + + T
Sbjct: 91 STDFMKIYSNMKNLKSLSMKKCRIEKKDFVYLMKIKQLESLNIIPHFSNITNEEICKICT 150
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
L NLK +S + L++++ + +L S+++S T + + L+++ ++ L SLN
Sbjct: 151 NLTNLKDFGISGMSLQYKTLQYITNMKSLTSLDISNTELYEEYLQEIGKMTHLTSLN--- 207
Query: 358 RQITDTG---LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
I D G L + SL GL L++ G R ++G F LR L
Sbjct: 208 --IGDNGTIPLQYIKSLAGLKSLNING-RFINNG------FYELREL------------- 245
Query: 415 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
KDL SLT L++S N T LI L SL++S + GL +K ++ L+ L
Sbjct: 246 --KDLHSLTELSVSHNTIKTKGLKYLIDTFPDLTSLDISYN-----GLGSIKKIRKLKHL 298
Query: 475 T 475
T
Sbjct: 299 T 299
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 119/244 (48%), Gaps = 24/244 (9%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
+SG + L ++ + +L SLD + ++ + L+ + +++LTSL+ N I Q
Sbjct: 160 ISGMSLQYKTLQYITNMKSLTSLDIS-NTELYEEYLQEIGKMTHLTSLNIGDNGTIPLQY 218
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVN--------LKGLMKLESLNIKWCNCITDSDMKP 175
+K+ AGL +L I+G +N LK L L L++ N I +K
Sbjct: 219 IKSLAGLKSL---------NINGRFINNGFYELRELKDLHSLTELSVS-HNTIKTKGLKY 268
Query: 176 L-SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L +L SL IS + + I ++ L+ LT L++ ++ L ++ L L LN
Sbjct: 269 LIDTFPDLTSLDISYNGL--GSIKKIRKLKHLTKLDISNNSISDQDLIYITCLPQLTKLN 326
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
++ Q++D+G F+ + SL+ +++ FN+IT++ + +G+ NLE L S +
Sbjct: 327 ISSNQITDNGALLFASMESLRNIDVRFNDITNDKV--FQGMINLEKLKFKSFSLEPSSRK 384
Query: 295 NLTG 298
N G
Sbjct: 385 NKDG 388
>gi|195383050|ref|XP_002050239.1| GJ20310 [Drosophila virilis]
gi|194145036|gb|EDW61432.1| GJ20310 [Drosophila virilis]
Length = 542
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 118/371 (31%), Positives = 188/371 (50%), Gaps = 62/371 (16%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 206 SPSLFNCLV-RRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 247
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQ 122
+V D L H D NL++LD + C QI+D L + + L NL +L IT
Sbjct: 248 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLKNLETLELGGCCNITNT 307
Query: 123 GMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCITDSD 172
G+ A GL L L+L C I G+ +L G ++LE L ++ C ++D
Sbjct: 308 GLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEA 367
Query: 173 MKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ ++ GLT+LKS+ +S C VTDSG+ +L + KL LNL C D++S +G
Sbjct: 368 LGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDIGMA 420
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGI 288
+ L++ G S I SL V F ++I+D+ L H+ +GL L SL+L+ C I
Sbjct: 421 Y--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQCQI 465
Query: 289 GDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKL 344
D+G++ + L L+ L + +++ GL+ L+ L+NL++I+L T +S + +
Sbjct: 466 TDQGMLKIAKSLHELENLNIGQCSRITDKGLQTLAEDLSNLKTIDLYGCTQLSSKGIDII 525
Query: 345 AGLSSLKSLNL 355
L L+ LNL
Sbjct: 526 MKLPKLQKLNL 536
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 113/352 (32%), Positives = 174/352 (49%), Gaps = 58/352 (16%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ G+ A +G N+ ++L H V+L L
Sbjct: 216 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLG-----HAFSVDLPNL--- 267
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
++L++ C ITD+ + ++ L NL++L++ C +T++G+ + GL+KL LNL C
Sbjct: 268 KTLDLSLCKQITDTSLGRIAQHLKNLETLELGGCCNITNTGLLLIAWGLKKLRHLNLRSC 327
Query: 215 PVTA-------ACLDSLSALGSLF--YLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A +A G+L YL L CQ LSD+ ++ + SLK +NL F
Sbjct: 328 WHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 387
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
+TD L HL + LE LNL SC I D G+ LT G SG
Sbjct: 388 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTE--------------GGSG----- 428
Query: 322 GLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLD 378
+ S+++SF ISD +L +A GL L+SL+L+ QITD G+ + SL L +L+
Sbjct: 429 ----INSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMLKIAKSLHELENLN 484
Query: 379 LFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 427
+ +RITD G L + NL+++++ G L+ G+ I L L LNL
Sbjct: 485 IGQCSRITDKGLQTLAEDLSNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 536
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 105/339 (30%), Positives = 162/339 (47%), Gaps = 53/339 (15%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
G+ L SLN+ C + D ++ L NLK+L +S C ++TD+ + + + L+ L
Sbjct: 236 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLKNLET 295
Query: 209 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L GC L L L +LNL C +SD G IG L GF+ T
Sbjct: 296 LELGGCCNITNTGLLLIAWGLKKLRHLNLRSCWHISDQG------IGHLA----GFSRET 345
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
E +L L+ G+ D C LSD +G GLT+
Sbjct: 346 AE-----------GNLQLEYLGLQD-------------CQRLSDEALGHIA----QGLTS 377
Query: 326 LESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FG 381
L+SINLSF ++D L+ LA + L+ LNL + I+D G+A LT +G+ LD+ F
Sbjct: 378 LKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFC 437
Query: 382 ARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE 439
+I+D ++ + LRSL + +TD G+ I K L L LN+ Q +TDK L+
Sbjct: 438 DKISDQALTHIAQGLYRLRSLSLNQCQITDQGMLKIAKSLHELENLNIGQCSRITDKGLQ 497
Query: 440 -LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 476
L L+ L ++++ ++++S G+ + L L+ L L
Sbjct: 498 TLAEDLSNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 536
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 115/237 (48%), Gaps = 34/237 (14%)
Query: 274 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 324
G+ L SLNL C +G V+L L L C +++DT +G +HL L
Sbjct: 236 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLKNLE 294
Query: 325 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-----GLT 375
LE N++ TG+ L GL L+ LNL + I+D G+ L + G
Sbjct: 295 TLELGGCCNITNTGL----LLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNL 350
Query: 376 HLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 428
L+ G R++D ++ + +L+S L C +TD+G+KH+ + L LNL
Sbjct: 351 QLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 409
Query: 429 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 482
N++D + L G +G+ SL+VS +I+ L H+ + L LRSL+L C++T
Sbjct: 410 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 466
>gi|224144082|ref|XP_002325179.1| predicted protein [Populus trichocarpa]
gi|222866613|gb|EEF03744.1| predicted protein [Populus trichocarpa]
Length = 66
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/58 (77%), Positives = 52/58 (89%)
Query: 442 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 499
+GLT LVSLNVSNS IT GLR+LKPLKNLRS++LESCKVTA+ IK+LQS +LPNLVS
Sbjct: 9 TGLTELVSLNVSNSLITIDGLRYLKPLKNLRSVSLESCKVTASGIKKLQSTELPNLVS 66
Score = 38.5 bits (88), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
+GLT L SL +S S +T G+ YLK L+ L ++LE C VTA+ + L +
Sbjct: 9 TGLTELVSLNVSNSLITIDGLRYLKPLKNLRSVSLESCKVTASGIKKLQS 58
>gi|363728137|ref|XP_003640464.1| PREDICTED: F-box/LRR-repeat protein 14 [Gallus gallus]
Length = 399
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 97/273 (35%), Positives = 152/273 (55%), Gaps = 24/273 (8%)
Query: 239 QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLV 294
Q++D + ++ + L+VL LG + IT+ L+ + GL L+SLNL SC + D G+
Sbjct: 128 QITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIG 187
Query: 295 NLTGLCN--------LKCLELSDTQVGSS-GLRHLS-GLTNLESINLSFTG-ISDGSLRK 343
+L G+ L+ L L D Q S L+HL+ GL L +NLSF G ISD L
Sbjct: 188 HLAGMTRSAAEGCLGLEQLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCGGISDAGLLH 247
Query: 344 LAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNL 398
L+ +SSL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L
Sbjct: 248 LSHMSSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGL 306
Query: 399 RSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-S 455
RSL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +
Sbjct: 307 RSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT 366
Query: 456 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
RIT GL + L L+ L L ++T ++ R
Sbjct: 367 RITKRGLERITQLPCLKVLNLGLWEMTESEKVR 399
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 106/329 (32%), Positives = 166/329 (50%), Gaps = 36/329 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM ++ L+L C + G + + L S
Sbjct: 67 RGIRRVQILSLRRSLSYVIQGMA------DIESLNLSGCYNLTDNGLGHAFVAEISSLRS 120
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 121 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 178
Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A + +A G L L L CQ LSD + ++ +G L+ LNL F
Sbjct: 179 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCG 238
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
I+D L+HL +++L SLNL SC I D G+++L G L L++S +VG L +
Sbjct: 239 GISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 298
Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
++ GL L S++L ISD + R + + L++LN+ +ITD GL + L+ LT
Sbjct: 299 IAQGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 358
Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEI 403
+DL+G RIT G + L+ L +
Sbjct: 359 GIDLYGCTRITKRGLERITQLPCLKVLNL 387
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 167/315 (53%), Gaps = 32/315 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ ++++SL+ + C ++D GL H + +S+L SL+ IT + A + L
Sbjct: 85 IQGMADIESLNLSGCYNLTDNGLGHAFVAEISSLRSLNLSLCKQITDSSLGRIAQYLKGL 144
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 145 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 204
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K++D + +L +GL +L LNL C ++ A L LS + SL LNL C
Sbjct: 205 QLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCGGISDAGLLHLSHMSSLRSLNLRSCDN 264
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L SL+L SC I DEG+
Sbjct: 265 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINR 323
Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 324 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLP 380
Query: 349 SLKSLNLDARQITDT 363
LK LNL ++T++
Sbjct: 381 CLKVLNLGLWEMTES 395
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 126/246 (51%), Gaps = 34/246 (13%)
Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 322
++G+ ++ESLNL C G+G + ++ L +L C +++D+ +G ++L G
Sbjct: 85 IQGMADIESLNLSGCYNLTDNGLGHAFVAEISSLRSLNLSLCKQITDSSLGRIA-QYLKG 143
Query: 323 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 372
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 144 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 199
Query: 373 --GLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLN 426
GL L L +++D +L R LR L + CGG ++DAG+ H+ +SSL LN
Sbjct: 200 CLGLEQLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCGG-ISDAGLLHLSHMSSLRSLN 258
Query: 427 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 483
L N++D + L G L L+VS ++ L ++ + L LRSL+L SC ++
Sbjct: 259 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISD 318
Query: 484 NDIKRL 489
I R+
Sbjct: 319 EGINRM 324
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 91/202 (45%), Gaps = 51/202 (25%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
++D+GL+HL S+L+SL+ C ISD G+ HL
Sbjct: 240 ISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHL------------------------AM 275
Query: 129 GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
G + L LD+ C ++ + +GL L SL++ C+ + + + + L++L
Sbjct: 276 GSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLN 335
Query: 187 I-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
I C ++TD G+ + + L +LT ++L GC +++ G
Sbjct: 336 IGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITKRG 372
Query: 245 CEKFSKIGSLKVLNLGFNEITD 266
E+ +++ LKVLNLG E+T+
Sbjct: 373 LERITQLPCLKVLNLGLWEMTE 394
>gi|332661885|ref|YP_004451355.1| small GTP-binding protein [Haliscomenobacter hydrossis DSM 1100]
gi|332337382|gb|AEE54482.1| small GTP-binding protein [Haliscomenobacter hydrossis DSM 1100]
Length = 1141
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 102/294 (34%), Positives = 153/294 (52%), Gaps = 26/294 (8%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
Q+SD L LS L++LSF + + T + ++ + R T L +L+
Sbjct: 191 QVSD-----LDALSALSNLSF-LDLSFTQVSDLSGLSTLSNLSSLNLRDT-YSSDLRSLR 243
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L+ L L + SD+ L+ L NL SL +S ++V+D ++ L L L+ L+L
Sbjct: 244 PLINLSDLKLSSTEV---SDLSVLAHLHNLSSLHLSYTQVSD--LSALSALSNLSFLDLS 298
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
V+ L +LSAL +L +LNL+ Q+SD + +L +++L E+TD L L
Sbjct: 299 DTQVSD--LSALSALYNLSFLNLSNTQISD--LSALRHLLNLSIIDLSSTELTD--LTTL 352
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
+ L NL S+NL+ D L L+ L NL L LSDTQ +S L LS L NL S+NLS
Sbjct: 353 RHLQNLNSINLNKTHASD--LSALSNLSNLSELYLSDTQ--ASDLSALSALFNLNSLNLS 408
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+T +S L LA L +L SL+L ++ D L+ L +L L+ LDL + D
Sbjct: 409 YTQVS--GLSALANLQNLSSLDLGDTEVFD--LSPLANLQNLSSLDLSDTEVVD 458
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 111/367 (30%), Positives = 165/367 (44%), Gaps = 83/367 (22%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD------------- 170
+ + LI L ++L R TR+ LV L L L L++ + +TD
Sbjct: 129 LYPLSNLIYLKHINLSR-TRL-PNLVTLGHLSNLSFLDLSYTQ-VTDLSDLSTLSNLNSL 185
Query: 171 -------SDMKPLSGLTNLKSLQISCSKVTD----------------------------- 194
SD+ LS L+NL L +S ++V+D
Sbjct: 186 NLSDTQVSDLDALSALSNLSFLDLSFTQVSDLSGLSTLSNLSSLNLRDTYSSDLRSLRPL 245
Query: 195 -------------SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
S ++ L L L+ L+L V+ L +LSAL +L +L+L+ Q+S
Sbjct: 246 INLSDLKLSSTEVSDLSVLAHLHNLSSLHLSYTQVSD--LSALSALSNLSFLDLSDTQVS 303
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
D S + +L LNL +I+D L L+ L NL ++L S + D L L L N
Sbjct: 304 D--LSALSALYNLSFLNLSNTQISD--LSALRHLLNLSIIDLSSTELTD--LTTLRHLQN 357
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
L + L+ T +S L LS L+NL + LS T SD L L+ L +L SLNL Q+
Sbjct: 358 LNSINLNKTH--ASDLSALSNLSNLSELYLSDTQASD--LSALSALFNLNSLNLSYTQV- 412
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421
+GL+AL +L L+ LDL + D L N +NL SL++ + D + + +LS
Sbjct: 413 -SGLSALANLQNLSSLDLGDTEVFDLSP--LANLQNLSSLDLSDTEVVD--LSPMINLSK 467
Query: 422 LTLLNLS 428
L LNLS
Sbjct: 468 LKYLNLS 474
>gi|290993148|ref|XP_002679195.1| predicted protein [Naegleria gruberi]
gi|284092811|gb|EFC46451.1| predicted protein [Naegleria gruberi]
Length = 311
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 92/174 (52%)
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
S++ L L++ NEI + H+ + L SLN+ + IGDEG ++ + L L++S
Sbjct: 127 SEMKQLTSLDVSDNEIGNVGAKHISEMKQLTSLNICNNRIGDEGAKFISEMQQLTLLDIS 186
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
D +G G++ +S + L S N+S I + + ++ + L SL++ I D+G+ +
Sbjct: 187 DNHIGDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQQLTSLDVSDNHIGDSGVKFI 246
Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
+ + LT L++ R+ D GA + K LRSL I L D GVK I ++ L
Sbjct: 247 SEMKQLTSLNIAINRVGDEGAKLISEMKQLRSLNISDNELGDEGVKFISEMKQL 300
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 100/183 (54%), Gaps = 1/183 (0%)
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
E + ++ + L L++SD ++G+ G +H+S + L S+N+ I D + ++ + L
Sbjct: 121 ENIKFISEMKQLTSLDVSDNEIGNVGAKHISEMKQLTSLNICNNRIGDEGAKFISEMQQL 180
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
L++ I D G+ ++ + LT ++ I + GA + + L SL++ + D
Sbjct: 181 TLLDISDNHIGDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQQLTSLDVSDNHIGD 240
Query: 411 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 470
+GVK I ++ LT LN++ N + D+ +LIS + L SLN+S++ + G++ + +K
Sbjct: 241 SGVKFISEMKQLTSLNIAIN-RVGDEGAKLISEMKQLRSLNISDNELGDEGVKFISEMKQ 299
Query: 471 LRS 473
LRS
Sbjct: 300 LRS 302
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 102/197 (51%), Gaps = 4/197 (2%)
Query: 256 VLNLGFNEITDECLVHLKGLTNLE---SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
++N+ FNE+ E ++K ++ ++ SL++ IG+ G +++ + L L + + ++
Sbjct: 107 IVNVKFNEMLLELRENIKFISEMKQLTSLDVSDNEIGNVGAKHISEMKQLTSLNICNNRI 166
Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
G G + +S + L +++S I D ++ ++ + L S N+ I + G +++ +
Sbjct: 167 GDEGAKFISEMQQLTLLDISDNHIGDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQ 226
Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
LT LD+ I DSG ++ K L SL I + D G K I ++ L LN+S N
Sbjct: 227 QLTSLDVSDNHIGDSGVKFISEMKQLTSLNIAINRVGDEGAKLISEMKQLRSLNISDN-E 285
Query: 433 LTDKTLELISGLTGLVS 449
L D+ ++ IS + L S
Sbjct: 286 LGDEGVKFISEMKQLRS 302
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 84/162 (51%), Gaps = 1/162 (0%)
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
++ +S + L S+++S I + + ++ + L SLN+ +I D G ++ + L
Sbjct: 121 ENIKFISEMKQLTSLDVSDNEIGNVGAKHISEMKQLTSLNICNNRIGDEGAKFISEMQQL 180
Query: 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
T LD+ I D G ++ K L S I + + G K I ++ LT L++S N ++
Sbjct: 181 TLLDISDNHIGDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQQLTSLDVSDN-HIG 239
Query: 435 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
D ++ IS + L SLN++ +R+ G + + +K LRSL +
Sbjct: 240 DSGVKFISEMKQLTSLNIAINRVGDEGAKLISEMKQLRSLNI 281
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 94/180 (52%)
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
I ++ +++LT L++ + +S + L LN+ ++ D+G + S++ L
Sbjct: 121 ENIKFISEMKQLTSLDVSDNEIGNVGAKHISEMKQLTSLNICNNRIGDEGAKFISEMQQL 180
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
+L++ N I D+ + + + L S N+ IG+ G +++ + L L++SD +G
Sbjct: 181 TLLDISDNHIGDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQQLTSLDVSDNHIGD 240
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
SG++ +S + L S+N++ + D + ++ + L+SLN+ ++ D G+ ++ + L
Sbjct: 241 SGVKFISEMKQLTSLNIAINRVGDEGAKLISEMKQLRSLNISDNELGDEGVKFISEMKQL 300
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 80/155 (51%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL I +++ D G ++ +Q+LTLL++ + + +S + L
Sbjct: 148 KHISEMKQLTSLNICNNRIGDEGAKFISEMQQLTLLDISDNHIGDKGVKFISEMKQLTSF 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
N++ + + G + S++ L L++ N I D + + + L SLN+ +GDEG
Sbjct: 208 NISDDLIGNVGAKSISEMQQLTSLDVSDNHIGDSGVKFISEMKQLTSLNIAINRVGDEGA 267
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
++ + L+ L +SD ++G G++ +S + L S
Sbjct: 268 KLISEMKQLRSLNISDNELGDEGVKFISEMKQLRS 302
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 2/163 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I + G +H+ + LTSL+ NN I +G K + + L LD+ G+ +
Sbjct: 141 EIGNVGAKHISEMKQLTSLNIC-NNRIGDEGAKFISEMQQLTLLDISDNHIGDKGVKFIS 199
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+ +L S NI + I + K +S + L SL +S + + DSG+ ++ +++LT LN+
Sbjct: 200 EMKQLTSFNIS-DDLIGNVGAKSISEMQQLTSLDVSDNHIGDSGVKFISEMKQLTSLNIA 258
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
V +S + L LN++ +L D+G + S++ L+
Sbjct: 259 INRVGDEGAKLISEMKQLRSLNISDNELGDEGVKFISEMKQLR 301
>gi|302767392|ref|XP_002967116.1| hypothetical protein SELMODRAFT_87311 [Selaginella moellendorffii]
gi|300165107|gb|EFJ31715.1| hypothetical protein SELMODRAFT_87311 [Selaginella moellendorffii]
Length = 637
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 143/482 (29%), Positives = 214/482 (44%), Gaps = 92/482 (19%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLS--NLTSLSFRRNNAITAQGMKAFA---------- 128
+ ++SLD + CI+I+D L + L+ L SL R T G+ A A
Sbjct: 65 TGIESLDLSSCIKITDEDLALVGELAGTRLRSLGLARMGGFTVAGIVALARNCSALVELD 124
Query: 129 ----------------GLINLVKLDLERCTRIH-GGLVNLK-GLMKLESLNIKWCNCITD 170
L +L KLDL C I GL L G KL+ + +K C I+D
Sbjct: 125 LRCCNSLGDLELAAVCQLGSLRKLDLTGCYMISDAGLGCLAAGCKKLQVVVLKGCVGISD 184
Query: 171 SDMKPL-SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALG 228
+ + L S L ++ +S +++TD G+ L L L +LNL C V A L S
Sbjct: 185 AGLCFLASNCKELTTIDVSYTEITDDGVRCLSNLPSLRVLNLAACSNVGDAGLTRTST-- 242
Query: 229 SLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-------NEITDECLVHLKGLTNLES 280
SL L+L+ C+ +++ G SK SL+ L LGF ++IT + L + LT +++
Sbjct: 243 SLLELDLSCCRSVTNVGISFLSK-RSLQFLKLGFCSPVKKRSQITGQLLEAVGKLTQIQT 301
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSD---------TQVGSSGLRHLSGLTNLESINL 331
L L C I +GL G C CL+LSD T G + + H G NL ++L
Sbjct: 302 LKLAGCEIAGDGL-RFVGSC---CLQLSDLSLSKCRGVTDSGMASIFH--GCKNLRKLDL 355
Query: 332 S----FTGISDGSL-RKLAGLSSLK-----------------------SLNLDARQITDT 363
+ T I+ ++ R AGL SLK L++ I D
Sbjct: 356 TCCLDLTEITAYNIARSSAGLVSLKIEACRILTENNIPLLMERCSCLEELDVTDCNIDDA 415
Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEIC-GGGLTDAGVKHIKD-LS 420
GL + L L L +++D+G ++ RN +L L++ G + DAGV I
Sbjct: 416 GLECIAKCKFLKTLKLGFCKVSDNGIEHVGRNCSDLIELDLYRSGNVGDAGVASIAAGCR 475
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESC 479
L +LNLS N+TD ++ IS L+ L L + + GL + L KNL L L+ C
Sbjct: 476 KLRILNLSYCPNITDASIVSISQLSHLQQLEIRGCK--RVGLEKKLPEFKNLVELDLKHC 533
Query: 480 KV 481
+
Sbjct: 534 GI 535
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 107/420 (25%), Positives = 190/420 (45%), Gaps = 60/420 (14%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
LQ + L G++D + +AS L ++D+S +++TD G+ L + +L+ L+ C
Sbjct: 171 LQVVVLKGCVGISDAGLCFLASNCKELTTIDVSYTEITDDGVRCLSNLPSLRVLNLAACS 230
Query: 93 QISDGGLEH------------LRGLSNL-------TSLSF---------RRNNAITAQGM 124
+ D GL R ++N+ SL F ++ + IT Q +
Sbjct: 231 NVGDAGLTRTSTSLLELDLSCCRSVTNVGISFLSKRSLQFLKLGFCSPVKKRSQITGQLL 290
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKG--LMKLESLNIKWCNCITDSDMKPL-SGLTN 181
+A L + L L C I G + G ++L L++ C +TDS M + G N
Sbjct: 291 EAVGKLTQIQTLKLAGC-EIAGDGLRFVGSCCLQLSDLSLSKCRGVTDSGMASIFHGCKN 349
Query: 182 LKSLQISC----SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL----GSLFYL 233
L+ L ++C +++T IA + L L +E C + +++ L L L
Sbjct: 350 LRKLDLTCCLDLTEITAYNIA--RSSAGLVSLKIEACRILTE--NNIPLLMERCSCLEEL 405
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCG-IGDE 291
++ C + D G E +K LK L LGF +++D + H+ + ++L L+L G +GD
Sbjct: 406 DVTDCNIDDAGLECIAKCKFLKTLKLGFCKVSDNGIEHVGRNCSDLIELDLYRSGNVGDA 465
Query: 292 GLVNLTGLC------NLK-CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
G+ ++ C NL C ++D + S + LS L LE G+ +KL
Sbjct: 466 GVASIAAGCRKLRILNLSYCPNITDASIVS--ISQLSHLQQLEIRGCKRVGLE----KKL 519
Query: 345 AGLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
+L L+L I D G+ ++ L L+L RI+++G L N + L+++++
Sbjct: 520 PEFKNLVELDLKHCGIGDRGMTSIVYCFPNLQQLNLSYCRISNAGLVMLGNLRCLQNVKL 579
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 121/258 (46%), Gaps = 39/258 (15%)
Query: 245 CEKFSKIG--SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
C++F G S K + L +E+ L G+ ESL+L SC I DE L L G
Sbjct: 35 CKRFYAAGAESQKTMRLFNSELLPRALARHTGI---ESLDLSSCIKITDEDLA-LVG--- 87
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLS-------------FTGISDGSLRKLAGLS 348
EL+ T++ S GL + G T + L+ + D L + L
Sbjct: 88 ----ELAGTRLRSLGLARMGGFTVAGIVALARNCSALVELDLRCCNSLGDLELAAVCQLG 143
Query: 349 SLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR----ITDSGAAYL-RNFKNLRSLE 402
SL+ L+L I+D GL L + G L + + I+D+G +L N K L +++
Sbjct: 144 SLRKLDLTGCYMISDAGLGCLAA--GCKKLQVVVLKGCVGISDAGLCFLASNCKELTTID 201
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAG 461
+ +TD GV+ + +L SL +LNL+ N+ D L S T L+ L++S R +T+ G
Sbjct: 202 VSYTEITDDGVRCLSNLPSLRVLNLAACSNVGDAGLTRTS--TSLLELDLSCCRSVTNVG 259
Query: 462 LRHLKPLKNLRSLTLESC 479
+ L ++L+ L L C
Sbjct: 260 ISFLSK-RSLQFLKLGFC 276
>gi|290998998|ref|XP_002682067.1| predicted protein [Naegleria gruberi]
gi|284095693|gb|EFC49323.1| predicted protein [Naegleria gruberi]
Length = 427
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 88/340 (25%), Positives = 151/340 (44%), Gaps = 40/340 (11%)
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER--CTRIHGGLV 149
++I + G++ + L L SL + + + + + L +LD+ R C R +GG
Sbjct: 114 LKIGEDGIKAISQLKQLKSLYLYAD--VDSNALNGVFEMTQLTELDINRKQCHRWNGGFK 171
Query: 150 NLKGLMKLESLNIKWCNCITDSDM-KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
LK L L+ L C CI D+ + +S L L L I+ + + G + L+ LT+
Sbjct: 172 KLKQLTNLKKLCAVGC-CIDYEDVFQSISQLDQLTELHIASNSLYSDGAKLIGKLKNLTI 230
Query: 209 LNLEGCPVTAAC---LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L++ C V L+S+S L +L YL+ L G SK+ +L L + N I+
Sbjct: 231 LDISYCGVCIPHNEGLESISELINLTYLDCANNGLRSIG--PISKLENLTFLRVSLNRIS 288
Query: 266 --DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
DE +V LK LTNL+ + + S +
Sbjct: 289 SLDESIVKLKKLTNLD---------------------------VGYNSISDQSAEVFSSM 321
Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
L S+ + I D S + ++ +S LK+L +D+ ++D G +++++ LT LD+
Sbjct: 322 KQLTSLFIQENNIGDKSAKSISEISQLKNLCIDSNIVSDKGAKSISTMENLTELDIRNND 381
Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
I D GA L L++L I +++ G+ +K L T
Sbjct: 382 IGDDGAKSLTRLTKLKTLRIAQNNISEEGMMTLKKLKYST 421
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 145/317 (45%), Gaps = 25/317 (7%)
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG---LTNLK 183
FA + L KLD+ G+ + L +L+SL + D D L+G +T L
Sbjct: 100 FAKMSQLTKLDISGLKIGEDGIKAISQLKQLKSLYL-----YADVDSNALNGVFEMTQLT 154
Query: 184 SLQIS---CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-CLDSLSALGSLFYLNLNRCQ 239
L I+ C + + G LK L L L GC + S+S L L L++
Sbjct: 155 ELDINRKQCHR-WNGGFKKLKQLTNLKKLCAVGCCIDYEDVFQSISQLDQLTELHIASNS 213
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL-ESLNLDSCGIGDEGLVNL-- 296
L DG + K+ +L +L++ + + C+ H +GL ++ E +NL + GL ++
Sbjct: 214 LYSDGAKLIGKLKNLTILDISYCGV---CIPHNEGLESISELINLTYLDCANNGLRSIGP 270
Query: 297 -TGLCNLKCLELSDTQVGS--SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
+ L NL L +S ++ S + L LTNL+ + + ISD S + + L SL
Sbjct: 271 ISKLENLTFLRVSLNRISSLDESIVKLKKLTNLD---VGYNSISDQSAEVFSSMKQLTSL 327
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
+ I D +++ ++ L +L + ++D GA + +NL L+I + D G
Sbjct: 328 FIQENNIGDKSAKSISEISQLKNLCIDSNIVSDKGAKSISTMENLTELDIRNNDIGDDGA 387
Query: 414 KHIKDLSSLTLLNLSQN 430
K + L+ L L ++QN
Sbjct: 388 KSLTRLTKLKTLRIAQN 404
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 142/305 (46%), Gaps = 31/305 (10%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
+ ++ L L IS K+ + GI + L++L L L V + L+ + + L L++
Sbjct: 100 FAKMSQLTKLDISGLKIGEDGIKAISQLKQLKSLYLYA-DVDSNALNGVFEMTQLTELDI 158
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV- 294
NR Q C ++ N GF + LK LTNL+ L C I E +
Sbjct: 159 NRKQ-----CHRW---------NGGFKK--------LKQLTNLKKLCAVGCCIDYEDVFQ 196
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
+++ L L L ++ + S G + + L NL +++S+ G+ L +S L +N
Sbjct: 197 SISQLDQLTELHIASNSLYSDGAKLIGKLKNLTILDISYCGVCIPHNEGLESISEL--IN 254
Query: 355 LDARQITDTGLAAL---TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
L + GL ++ + L LT L + RI+ + ++ K L +L++ ++D
Sbjct: 255 LTYLDCANNGLRSIGPISKLENLTFLRVSLNRISSLDESIVK-LKKLTNLDVGYNSISDQ 313
Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 471
+ + LT L + +N N+ DK+ + IS ++ L +L + ++ ++ G + + ++NL
Sbjct: 314 SAEVFSSMKQLTSLFIQEN-NIGDKSAKSISEISQLKNLCIDSNIVSDKGAKSISTMENL 372
Query: 472 RSLTL 476
L +
Sbjct: 373 TELDI 377
>gi|195121256|ref|XP_002005136.1| GI19235 [Drosophila mojavensis]
gi|193910204|gb|EDW09071.1| GI19235 [Drosophila mojavensis]
Length = 545
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 117/371 (31%), Positives = 188/371 (50%), Gaps = 62/371 (16%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL +G +L S++LSG
Sbjct: 209 SPSLFNCLV-RRGIKKVQILSLRR-SLKDLVVGV----------------PALTSLNLSG 250
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQ 122
+V D L H D NL++LD + C QI+D L + + L NL +L IT
Sbjct: 251 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLKNLETLELGGCCNITNT 310
Query: 123 GMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCITDSD 172
G+ A GL L L+L C I G+ +L G ++LE L ++ C ++D
Sbjct: 311 GLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEA 370
Query: 173 MKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ ++ GLT+LKS+ +S C VTDSG+ +L + KL LNL C D++S +G
Sbjct: 371 LGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDIGMA 423
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGI 288
+ L++ G S I SL V F ++I+D+ L H+ +GL L SL+L+ C I
Sbjct: 424 Y--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQCQI 468
Query: 289 GDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKL 344
D+G++ + L L+ L + +++ GL+ L+ L+NL++I+L T +S + +
Sbjct: 469 TDQGMLKIAKSLHELENLNIGQCSRITDKGLQTLAEDLSNLKTIDLYGCTQLSSKGIDII 528
Query: 345 AGLSSLKSLNL 355
L L+ LNL
Sbjct: 529 MKLPKLQKLNL 539
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 113/352 (32%), Positives = 174/352 (49%), Gaps = 58/352 (16%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ G+ A +G N+ ++L H V+L L
Sbjct: 219 RGIKKVQILSLRRSLKDLVVGVPALTSLNLSGCFNVADMNLG-----HAFSVDLPNL--- 270
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
++L++ C ITD+ + ++ L NL++L++ C +T++G+ + GL+KL LNL C
Sbjct: 271 KTLDLSLCKQITDTSLGRIAQHLKNLETLELGGCCNITNTGLLLIAWGLKKLRHLNLRSC 330
Query: 215 PVTA-------ACLDSLSALGSL--FYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A +A G+L YL L CQ LSD+ ++ + SLK +NL F
Sbjct: 331 WHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 390
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
+TD L HL + LE LNL SC I D G+ LT G SG
Sbjct: 391 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTE--------------GGSG----- 431
Query: 322 GLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLD 378
+ S+++SF ISD +L +A GL L+SL+L+ QITD G+ + SL L +L+
Sbjct: 432 ----INSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMLKIAKSLHELENLN 487
Query: 379 LFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 427
+ +RITD G L + NL+++++ G L+ G+ I L L LNL
Sbjct: 488 IGQCSRITDKGLQTLAEDLSNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 539
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 105/339 (30%), Positives = 162/339 (47%), Gaps = 53/339 (15%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
G+ L SLN+ C + D ++ L NLK+L +S C ++TD+ + + + L+ L
Sbjct: 239 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLKNLET 298
Query: 209 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L GC L L L +LNL C +SD G IG L GF+ T
Sbjct: 299 LELGGCCNITNTGLLLIAWGLKKLRHLNLRSCWHISDQG------IGHLA----GFSRET 348
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
E +L L+ G+ D C LSD +G GLT+
Sbjct: 349 AE-----------GNLQLEYLGLQD-------------CQRLSDEALGHIA----QGLTS 380
Query: 326 LESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FG 381
L+SINLSF ++D L+ LA + L+ LNL + I+D G+A LT +G+ LD+ F
Sbjct: 381 LKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFC 440
Query: 382 ARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE 439
+I+D ++ + LRSL + +TD G+ I K L L LN+ Q +TDK L+
Sbjct: 441 DKISDQALTHIAQGLYRLRSLSLNQCQITDQGMLKIAKSLHELENLNIGQCSRITDKGLQ 500
Query: 440 -LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 476
L L+ L ++++ ++++S G+ + L L+ L L
Sbjct: 501 TLAEDLSNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 539
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 115/237 (48%), Gaps = 34/237 (14%)
Query: 274 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 324
G+ L SLNL C +G V+L L L C +++DT +G +HL L
Sbjct: 239 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLKNLE 297
Query: 325 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLT----- 375
LE N++ TG+ L GL L+ LNL + I+D G+ L + T
Sbjct: 298 TLELGGCCNITNTGL----LLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNL 353
Query: 376 HLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 428
L+ G R++D ++ + +L+S L C +TD+G+KH+ + L LNL
Sbjct: 354 QLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 412
Query: 429 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 482
N++D + L G +G+ SL+VS +I+ L H+ + L LRSL+L C++T
Sbjct: 413 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 469
>gi|17549135|ref|NP_522475.1| GALA protein 1 [Ralstonia solanacearum GMI1000]
gi|17431386|emb|CAD18065.1| lrr-gala family type III effector protein (gala 1) [Ralstonia
solanacearum GMI1000]
Length = 661
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 100/352 (28%), Positives = 167/352 (47%), Gaps = 3/352 (0%)
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
+ LT+L R N I G +A A ++ LD G L L SL++ +
Sbjct: 188 TTLTALDIR-GNGIGDAGAQALAANTSITSLDASFNDIGVAGARALAANTTLTSLDLGF- 245
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N I D ++ L+ T+L SL + ++ D+G A L LT ++L + + L+
Sbjct: 246 NAIGDEGLQALATNTSLTSLTVGSCEIGDAGAAALANNTALTSVDLTCNHIGEEGAEGLA 305
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
A L L+L R +SD G + +L L + FN+I L T L +L++
Sbjct: 306 ANTVLTSLDLTRNSISDRGAAALAGNTTLTSLCVNFNDIYGRGARWLAENTTLTTLDISY 365
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
IGD G + L L+ L + ++G G R L+G T L ++++S I + + LA
Sbjct: 366 NPIGDWGALGLADNMTLRSLSVVAGRIGVEGARALAGNTTLTTLDISVNAIGNEGAQALA 425
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
++L +L+L + ++ A + T L LD+ RI +GA L + L +L + G
Sbjct: 426 ANATLTTLSLRSCELRAAAAEAFKANTTLASLDIGENRIEAAGAQALADNTALTTLRVTG 485
Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
+ AG + + SLT LN+SQN ++ + ++ T L SL+VS++ I
Sbjct: 486 NQIGMAGAQALAANRSLTKLNISQN-DIRSAGAQALAANTSLTSLDVSSASI 536
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 116/407 (28%), Positives = 183/407 (44%), Gaps = 13/407 (3%)
Query: 30 DCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFN 89
+ L L LG + + D+ + +A+ +SL S+ + ++ D+G L + + L S+D
Sbjct: 235 NTTLTSLDLG-FNAIGDEGLQALATN-TSLTSLTVGSCEIGDAGAAALANNTALTSVDLT 292
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR---IHG 146
C I + G E L + LTSL RN +I+ +G A AG L L C I+G
Sbjct: 293 -CNHIGEEGAEGLAANTVLTSLDLTRN-SISDRGAAALAGNTTLTSL----CVNFNDIYG 346
Query: 147 -GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
G L L +L+I + N I D L+ L+SL + ++ G L G
Sbjct: 347 RGARWLAENTTLTTLDISY-NPIGDWGALGLADNMTLRSLSVVAGRIGVEGARALAGNTT 405
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
LT L++ + +L+A +L L+L C+L E F +L L++G N I
Sbjct: 406 LTTLDISVNAIGNEGAQALAANATLTTLSLRSCELRAAAAEAFKANTTLASLDIGENRIE 465
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
L T L +L + IG G L +L L +S + S+G + L+ T+
Sbjct: 466 AAGAQALADNTALTTLRVTGNQIGMAGAQALAANRSLTKLNISQNDIRSAGAQALAANTS 525
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L S+++S I + LA +S+ LN++ I D G AL + LT L I
Sbjct: 526 LTSLDVSSASIGAAGAQALAANTSITWLNINDNHIGDAGAQALAAHPALTSLYACDNFIG 585
Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
+G L L SL I G + DAGVK + ++LT L + + +
Sbjct: 586 TAGVQALAANTRLTSLSIWGNRIGDAGVKALAANTTLTKLTIGKRVD 632
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 116/444 (26%), Positives = 198/444 (44%), Gaps = 28/444 (6%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++D+ G+ + D+G L +++ SLD +F I G L + LTSL N
Sbjct: 188 TTLTALDIRGNGIGDAGAQALAANTSITSLDASFN-DIGVAGARALAANTTLTSLDLGFN 246
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
AI +G++A A +L L + C G L L S+++ CN I + + L
Sbjct: 247 -AIGDEGLQALATNTSLTSLTVGSCEIGDAGAAALANNTALTSVDLT-CNHIGEEGAEGL 304
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ T L SL ++ + ++D G A L G LT L + + L+ +L L+++
Sbjct: 305 AANTVLTSLDLTRNSISDRGAAALAGNTTLTSLCVNFNDIYGRGARWLAENTTLTTLDIS 364
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL--- 293
+ D G + +L+ L++ I E L G T L +L++ IG+EG
Sbjct: 365 YNPIGDWGALGLADNMTLRSLSVVAGRIGVEGARALAGNTTLTTLDISVNAIGNEGAQAL 424
Query: 294 ---VNLTGL----CNLK--------------CLELSDTQVGSSGLRHLSGLTNLESINLS 332
LT L C L+ L++ + ++ ++G + L+ T L ++ ++
Sbjct: 425 AANATLTTLSLRSCELRAAAAEAFKANTTLASLDIGENRIEAAGAQALADNTALTTLRVT 484
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
I + LA SL LN+ I G AL + T LT LD+ A I +GA L
Sbjct: 485 GNQIGMAGAQALAANRSLTKLNISQNDIRSAGAQALAANTSLTSLDVSSASIGAAGAQAL 544
Query: 393 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
++ L I + DAG + + +LT L N + ++ ++ T L SL++
Sbjct: 545 AANTSITWLNINDNHIGDAGAQALAAHPALTSLYACDNF-IGTAGVQALAANTRLTSLSI 603
Query: 453 SNSRITSAGLRHLKPLKNLRSLTL 476
+RI AG++ L L LT+
Sbjct: 604 WGNRIGDAGVKALAANTTLTKLTI 627
>gi|290972775|ref|XP_002669126.1| predicted protein [Naegleria gruberi]
gi|284082669|gb|EFC36382.1| predicted protein [Naegleria gruberi]
Length = 467
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 109/403 (27%), Positives = 189/403 (46%), Gaps = 45/403 (11%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES----- 159
L+ L S+ + NN I M++ A + L+ LD+ C R NL+G+ L S
Sbjct: 63 LTQLKSIVLKFNN-INEYEMESIASMNKLISLDI-GCAR-----TNLEGIKILSSKDNFT 115
Query: 160 -LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT---DSGIAYLKGLQKLTLLNLEGCP 215
LNI++ M+ +S +T+L+ L IS + ++ YLK L+KLT L +
Sbjct: 116 ELNIEFSFFDQVPYMEYVSKMTDLRKLDISNNPISLNRAKSANYLKSLEKLTDLTVTYLD 175
Query: 216 VTAACLDSLSALG---------------------SLFYL---NLNRCQLSDDGCEKFSK- 250
+ L S+S L S+F L ++ + ++G + S
Sbjct: 176 MDLEFLKSISNLKFLTSLSIYGNLVGIEGVKIICSMFQLKKLDITLNAIGEEGAKLISNS 235
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+ L L +G N+I D+ + + L +L+L+ IG +GL + + LK L L+
Sbjct: 236 LKQLNTLRIGDNQIGDKGAESISSMKTLTALDLEESNIGPQGLEFICQMDQLKSLMLNFN 295
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL-T 369
+G S L ++ LTNL I+L T I ++ ++ ++ L+++N+ ++ D L +
Sbjct: 296 TIGGSRL-PINALTNLTEISLVLTNIGIEIVKSISLITKLRNVNISDNRLGDECLEIIGN 354
Query: 370 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 429
SL LT LD+ +T++G YL + KNL L L D ++H+ L L L ++
Sbjct: 355 SLFNLTELDISENNMTENGTKYLSSLKNLTHLNAEDNRLNDESIQHLCSLKKLKSLYINN 414
Query: 430 NCNLTDKTLELISG-LTGLVSLNVSNSRITSAGLRHLKPLKNL 471
N + D+ LI+ + L ++ N++ T G LK K+L
Sbjct: 415 N-QVGDEGFALIANSMKQLRLVHAHNNKETEIGRTLLKSRKHL 456
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 98/393 (24%), Positives = 181/393 (46%), Gaps = 42/393 (10%)
Query: 40 QYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL 99
++ +N+ M+ IAS + L+S+D+ + G+ L N L+ F +
Sbjct: 72 KFNNINEYEMESIASM-NKLISLDIGCARTNLEGIKILSSKDNFTELNIEFSFFDQVPYM 130
Query: 100 EHLRGLSNLTSLSFRRN-----NAITAQGMKAFAGLINL----VKLDLE----------- 139
E++ +++L L N A +A +K+ L +L + +DLE
Sbjct: 131 EYVSKMTDLRKLDISNNPISLNRAKSANYLKSLEKLTDLTVTYLDMDLEFLKSISNLKFL 190
Query: 140 RCTRIHGGLVNLKG------LMKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQISCSKV 192
I+G LV ++G + +L+ L+I N I + K +S L L +L+I +++
Sbjct: 191 TSLSIYGNLVGIEGVKIICSMFQLKKLDIT-LNAIGEEGAKLISNSLKQLNTLRIGDNQI 249
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL--FYLNLNRC---QLSDDGCEK 247
D G + ++ LT L+LE + L+ + + L LN N +L +
Sbjct: 250 GDKGAESISSMKTLTALDLEESNIGPQGLEFICQMDQLKSLMLNFNTIGGSRLPINALTN 309
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLE 306
++I SL + N+G E + + +T L ++N+ +GDE L + L NL L+
Sbjct: 310 LTEI-SLVLTNIGI-----EIVKSISLITKLRNVNISDNRLGDECLEIIGNSLFNLTELD 363
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
+S+ + +G ++LS L NL +N ++D S++ L L LKSL ++ Q+ D G A
Sbjct: 364 ISENNMTENGTKYLSSLKNLTHLNAEDNRLNDESIQHLCSLKKLKSLYINNNQVGDEGFA 423
Query: 367 ALT-SLTGLTHLDLFGARITDSGAAYLRNFKNL 398
+ S+ L + + T+ G L++ K+L
Sbjct: 424 LIANSMKQLRLVHAHNNKETEIGRTLLKSRKHL 456
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 102/233 (43%), Gaps = 6/233 (2%)
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
S + LK + L FN I + + + + L SL++ EG+ L+ N L +
Sbjct: 61 SSLTQLKSIVLKFNNINEYEMESIASMNKLISLDIGCARTNLEGIKILSSKDNFTELNIE 120
Query: 309 DTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
+ + ++S +T+L +++S IS + L SL+ L D L
Sbjct: 121 FSFFDQVPYMEYVSKMTDLRKLDISNNPISLNRAKSANYLKSLEKLTDLTVTYLDMDLEF 180
Query: 368 LTSLTG---LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD-LSSLT 423
L S++ LT L ++G + G + + L+ L+I + + G K I + L L
Sbjct: 181 LKSISNLKFLTSLSIYGNLVGIEGVKIICSMFQLKKLDITLNAIGEEGAKLISNSLKQLN 240
Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
L + N + DK E IS + L +L++ S I GL + + L+SL L
Sbjct: 241 TLRIGDN-QIGDKGAESISSMKTLTALDLEESNIGPQGLEFICQMDQLKSLML 292
>gi|351713942|gb|EHB16861.1| F-box/LRR-repeat protein 14 [Heterocephalus glaber]
Length = 399
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 107/337 (31%), Positives = 176/337 (52%), Gaps = 47/337 (13%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+ G+ N++SL +S C +TD+G+ + + +GSL LN
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123
Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
L+ C Q++D + ++ + L+VL LG + IT+ L+ + GL L+SLNL SC +
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183
Query: 290 DEGLVNLTGLCN--------LKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDG 339
D G+ +L G+ L+ L L D Q + +H+S G +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSQHISRGRWRGRLLNLSFCGGISDA 243
Query: 340 SLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RN 394
L L+ + SL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ +
Sbjct: 244 GLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQG 302
Query: 395 FKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNV 452
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++
Sbjct: 303 LDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDL 362
Query: 453 SN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
+RIT GL + L L+ L L ++T ++ R
Sbjct: 363 YGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKVR 399
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 97/314 (30%), Positives = 165/314 (52%), Gaps = 31/314 (9%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QL 240
L + C K+TD +G + LLNL C ++ A L LS +GSL LNL C +
Sbjct: 206 QLTLQDCQKLTDLSQHISRGRWRGRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNI 265
Query: 241 SDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL--- 293
SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+
Sbjct: 266 SDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRM 324
Query: 294 -VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 325 VRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLPC 381
Query: 350 LKSLNLDARQITDT 363
LK LNL Q+TD+
Sbjct: 382 LKVLNLGLWQMTDS 395
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 103/338 (30%), Positives = 167/338 (49%), Gaps = 39/338 (11%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 P----VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL--------KVLNLGF- 261
V L ++ + L L + L D C+K + + ++LNL F
Sbjct: 180 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQD--CQKLTDLSQHISRGRWRGRLLNLSFC 237
Query: 262 NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLR 318
I+D L+HL + +L SLNL SC I D G+++L G L L++S +VG L
Sbjct: 238 GGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLA 297
Query: 319 HLS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGL 374
+++ GL L+S++L ISD + R + + L++LN+ +ITD GL + L+ L
Sbjct: 298 YIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQL 357
Query: 375 THLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
T +DL+G RIT G + L+ L + +TD+
Sbjct: 358 TGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 395
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 121/245 (49%), Gaps = 33/245 (13%)
Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 322
++G+ N+ESLNL C G+G + + L L C +++D+ +G ++L G
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 144
Query: 323 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 372
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 145 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 200
Query: 373 --GLTHLDLFG-ARITDSGAAYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNL 427
GL L L ++TD R R +L CGG ++DAG+ H+ + SL LNL
Sbjct: 201 CLGLEQLTLQDCQKLTDLSQHISRGRWRGRLLNLSFCGG-ISDAGLLHLSHMGSLRSLNL 259
Query: 428 SQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 484
N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++ +
Sbjct: 260 RSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 319
Query: 485 DIKRL 489
I R+
Sbjct: 320 GINRM 324
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 91/202 (45%), Gaps = 51/202 (25%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
++D+GL+HL +L+SL+ C ISD G+ HL
Sbjct: 240 ISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL------------------------AM 275
Query: 129 GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++L
Sbjct: 276 GSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLN 335
Query: 187 I-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
I C ++TD G+ + + L +LT ++L GC +++ G
Sbjct: 336 IGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITKRG 372
Query: 245 CEKFSKIGSLKVLNLGFNEITD 266
E+ +++ LKVLNLG ++TD
Sbjct: 373 LERITQLPCLKVLNLGLWQMTD 394
>gi|356551924|ref|XP_003544322.1| PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max]
Length = 652
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 130/488 (26%), Positives = 228/488 (46%), Gaps = 67/488 (13%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTD--SGLI 75
LT+V+ +A + L+ LCLG+ G+ D + IA + S L V L VTD +GLI
Sbjct: 139 LTDVAAKAIAEAVNLERLCLGRCKGITDLGIGCIAVRCSKLRHVGLRWCIRVTDFGAGLI 198
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF-AGLINLV 134
+K C ++SLD ++ + I++ L H+ L +L L I G+ A ++
Sbjct: 199 AIK-CKEIRSLDLSY-LPITEKCLNHILQLEHLEDLILEHCLGIEDHGLATLQASCKSMK 256
Query: 135 KLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
L+L +C I H G+ +L SG NL+ L +S S +
Sbjct: 257 MLNLSKCQNIGHIGIASLT------------------------SGSQNLEKLILSSSVIV 292
Query: 194 DSGIAY-LKGLQKLTLLNLEGCPVTAACLDSLSALG-SLFYLNLNRCQ-LSDDG------ 244
+ +A L+ +L + L+ C T + L ++ LG SL LNL++C ++D+
Sbjct: 293 TTDLAKCLQSFSRLQSVKLDSCLGTKSGLKAIGNLGASLKELNLSKCVGVTDENLPFLVQ 352
Query: 245 ----CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGL 299
EK + + + +T+ CL L SL ++SC + EG + G
Sbjct: 353 PHKDLEKLDITCCHTITHASISSLTNSCL-------RLTSLRMESCSLVSREGFL-FIGR 404
Query: 300 CN-LKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNL- 355
C L+ L+++DT++ GL+ +S T L S+ L + I+D L+ +A S LK L+L
Sbjct: 405 CQLLEELDVTDTEIDDQGLQSISRCTKLSSLKLGICSMITDNGLKHIASSCSKLKQLDLY 464
Query: 356 DARQITDTGLAALTSLTGLTHLDL----FGARITDSGAAYLRNFKNLRSLEICG-GGLTD 410
+ +ITD G+ A+ G L++ + + TD+ +L + LR+LEI G ++
Sbjct: 465 RSSRITDEGIVAIA--LGCPSLEVVNIAYNSNTTDTSLEFLSKCQKLRTLEIRGCPRISP 522
Query: 411 AGVKHI-KDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSNSRITSAGLRHLKPL 468
G+ +I L +L++ + + D ++L L + +S +T GL L +
Sbjct: 523 KGLSNIVARCRYLEMLDIKKCHKINDTGMIQLAQHSQNLKHIKLSYCSVTDVGLIALASI 582
Query: 469 KNLRSLTL 476
L+ +++
Sbjct: 583 SCLQHISI 590
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 105/342 (30%), Positives = 169/342 (49%), Gaps = 28/342 (8%)
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
C C+ ++D+ LT+ V IA L++L L +G +T + +
Sbjct: 125 CTCLVEADLSNRPDLTD----------VAAKAIAEAVNLERLCLGRCKG--ITDLGIGCI 172
Query: 225 SALGS-LFYLNLNRC-QLSDDGCEKFS-KIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
+ S L ++ L C +++D G + K ++ L+L + IT++CL H+ L +LE L
Sbjct: 173 AVRCSKLRHVGLRWCIRVTDFGAGLIAIKCKEIRSLDLSYLPITEKCLNHILQLEHLEDL 232
Query: 282 NLDSC-GIGDEGLVNLTGLC-NLKCLELSDTQ-VGSSGLRHL-SGLTNLESINLSFTGIS 337
L+ C GI D GL L C ++K L LS Q +G G+ L SG NLE + LS + I
Sbjct: 233 ILEHCLGIEDHGLATLQASCKSMKMLNLSKCQNIGHIGIASLTSGSQNLEKLILSSSVIV 292
Query: 338 DGSLRK-LAGLSSLKSLNLDARQITDTGLAALTSL-TGLTHLDLFGAR-ITDSGAAYL-R 393
L K L S L+S+ LD+ T +GL A+ +L L L+L +TD +L +
Sbjct: 293 TTDLAKCLQSFSRLQSVKLDSCLGTKSGLKAIGNLGASLKELNLSKCVGVTDENLPFLVQ 352
Query: 394 NFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLS-QNCNLTDKTLELISGLTGLV-SL 450
K+L L+I C +T A + + + S L L +L ++C+L + L G L+ L
Sbjct: 353 PHKDLEKLDITCCHTITHASISSLTN-SCLRLTSLRMESCSLVSREGFLFIGRCQLLEEL 411
Query: 451 NVSNSRITSAGLRHLKPLKNLRSLTLESCK-VTANDIKRLQS 491
+V+++ I GL+ + L SL L C +T N +K + S
Sbjct: 412 DVTDTEIDDQGLQSISRCTKLSSLKLGICSMITDNGLKHIAS 453
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 33/188 (17%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNN 117
L +D++ +++ D GL + C+ L SL C I+D GL+H+ S L L R++
Sbjct: 408 LEELDVTDTEIDDQGLQSISRCTKLSSLKLGICSMITDNGLKHIASSCSKLKQLDLYRSS 467
Query: 118 AITAQGMKAFA------GLINLV--------------------KLDLERCTRIHG-GLVN 150
IT +G+ A A ++N+ L++ C RI GL N
Sbjct: 468 RITDEGIVAIALGCPSLEVVNIAYNSNTTDTSLEFLSKCQKLRTLEIRGCPRISPKGLSN 527
Query: 151 LKGLMK-LESLNIKWCNCITDSDMKPLSGLT-NLKSLQISCSKVTDSG---IAYLKGLQK 205
+ + LE L+IK C+ I D+ M L+ + NLK +++S VTD G +A + LQ
Sbjct: 528 IVARCRYLEMLDIKKCHKINDTGMIQLAQHSQNLKHIKLSYCSVTDVGLIALASISCLQH 587
Query: 206 LTLLNLEG 213
+++ ++EG
Sbjct: 588 ISIFHVEG 595
>gi|300697280|ref|YP_003747941.1| leucine-rich-repeat type III effector protein (GALA2) [Ralstonia
solanacearum CFBP2957]
gi|299074004|emb|CBJ53541.1| leucine-rich-repeat type III effector protein (GALA2) [Ralstonia
solanacearum CFBP2957]
Length = 1051
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 158/354 (44%), Gaps = 7/354 (1%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ D+ + +AS +SL S++LSG+ + D+G L + L SL+ + I D G++ L
Sbjct: 685 IGDREVQALASS-ASLTSLNLSGNRIGDAGAQALGRNTVLTSLNVS-ANPIGDTGVQALA 742
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
G +LTSL R I G+ A A L LD+ L L SL
Sbjct: 743 GSRSLTSLELR-GIRIGEAGIAALASNTVLRSLDISSNDLSEQSAAELARNQTLTSLKAN 801
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
C +T+ + L+ + +L++L++ + + D+G+ + L LNL P+T L
Sbjct: 802 DCG-LTNGMAQQLARIRSLRTLEVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLRP 860
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L +L L+++R D G SK +L L LGFN I L L SL+L
Sbjct: 861 LELSRTLTSLDVSRIGCGDRGALLLSKNRALTSLKLGFNGIGSAGAQGLTANRTLISLDL 920
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
I L L L +SD ++ L+ L ++++S +S + R
Sbjct: 921 RGNTIDVAAATALAHTGRLGSLNVSDCKLDDEAASALAESLTLTALDVSMNRLSSQAARA 980
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
LAG ++L SLN+ I G AL T LT LD AR D G A R +N
Sbjct: 981 LAGNATLTSLNISHNHIGPDGAQALAESTSLTFLD---ARANDIGEAGARALEN 1031
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 109/376 (28%), Positives = 172/376 (45%), Gaps = 7/376 (1%)
Query: 58 SLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
S+ +DLSG + V+++GL L L SLD + +I D ++ L ++LTSL+
Sbjct: 648 SVRHLDLSGCTGAAVSEAGLADLAR-RPLASLDLSRT-RIGDREVQALASSASLTSLNLS 705
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N I G +A L L++ G+ L G L SL ++ I ++ +
Sbjct: 706 -GNRIGDAGAQALGRNTVLTSLNVSANPIGDTGVQALAGSRSLTSLELRGIR-IGEAGIA 763
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L+ T L+SL IS + +++ A L Q LT L C +T L+ + SL L
Sbjct: 764 ALASNTVLRSLDISSNDLSEQSAAELARNQTLTSLKANDCGLTNGMAQQLARIRSLRTLE 823
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+ + D G ++ SL+ LNL N IT + L L+ L SL++ G GD G +
Sbjct: 824 VGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLRPLELSRTLTSLDVSRIGCGDRGAL 883
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
L+ L L+L +GS+G + L+ L S++L I + LA L SLN
Sbjct: 884 LLSKNRALTSLKLGFNGIGSAGAQGLTANRTLISLDLRGNTIDVAAATALAHTGRLGSLN 943
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
+ ++ D +AL LT LD+ R++ A L L SL I + G +
Sbjct: 944 VSDCKLDDEAASALAESLTLTALDVSMNRLSSQAARALAGNATLTSLNISHNHIGPDGAQ 1003
Query: 415 HIKDLSSLTLLNLSQN 430
+ + +SLT L+ N
Sbjct: 1004 ALAESTSLTFLDARAN 1019
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 104/198 (52%), Gaps = 4/198 (2%)
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L SL+L IGD + L +L L LS ++G +G + L T L S+N+S I
Sbjct: 675 LASLDLSRTRIGDREVQALASSASLTSLNLSGNRIGDAGAQALGRNTVLTSLNVSANPIG 734
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
D ++ LAG SL SL L +I + G+AAL S T L LD+ +++ AA L +
Sbjct: 735 DTGVQALAGSRSLTSLELRGIRIGEAGIAALASNTVLRSLDISSNDLSEQSAAELARNQT 794
Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
L SL+ GLT+ + + + SL L + N ++ D + I+ L +LN+S++ I
Sbjct: 795 LTSLKANDCGLTNGMAQQLARIRSLRTLEVGSN-SIGDTGVLAIARNASLRTLNLSHNPI 853
Query: 458 TSAGLRHLKPLKNLRSLT 475
T GLR PL+ R+LT
Sbjct: 854 TLQGLR---PLELSRTLT 868
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 99/350 (28%), Positives = 151/350 (43%), Gaps = 31/350 (8%)
Query: 161 NIKWCNC--ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK-LTLLNLEGCPVT 217
N W + +T D L L N +L+ S S I L+ L + L+L GC
Sbjct: 602 NAAWASTKHLTVWDKAALGRLQNYPALE-SLSFHGHLSIEDLRALPPSVRHLDLSGCTGA 660
Query: 218 AACLDSLSALG--SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
A L+ L L L+L+R ++ D + + SL LNL N I D L
Sbjct: 661 AVSEAGLADLARRPLASLDLSRTRIGDREVQALASSASLTSLNLSGNRIGDAGAQALGRN 720
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT- 334
T L SLN+ + IGD G+ L G +L LEL ++G +G+ L+ T L S+++S
Sbjct: 721 TVLTSLNVSANPIGDTGVQALAGSRSLTSLELRGIRIGEAGIAALASNTVLRSLDISSND 780
Query: 335 -----------------------GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
G+++G ++LA + SL++L + + I DTG+ A+
Sbjct: 781 LSEQSAAELARNQTLTSLKANDCGLTNGMAQQLARIRSLRTLEVGSNSIGDTGVLAIARN 840
Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
L L+L IT G L + L SL++ G D G + +LT L L N
Sbjct: 841 ASLRTLNLSHNPITLQGLRPLELSRTLTSLDVSRIGCGDRGALLLSKNRALTSLKLGFNG 900
Query: 432 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
+ L + T L+SL++ + I A L L SL + CK+
Sbjct: 901 IGSAGAQGLTANRT-LISLDLRGNTIDVAAATALAHTGRLGSLNVSDCKL 949
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 139/320 (43%), Gaps = 30/320 (9%)
Query: 14 LVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSG 73
L SR LT + L R + + + +AS + L S+D+S +D+++
Sbjct: 741 LAGSRSLTSLELRGIR--------------IGEAGIAALASN-TVLRSLDISSNDLSEQS 785
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
L L SL N C +++G + L + +L +L +N+I G+ A A +L
Sbjct: 786 AAELARNQTLTSLKANDC-GLTNGMAQQLARIRSLRTLEVG-SNSIGDTGVLAIARNASL 843
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLE------SLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+L + L+GL LE SL++ C D LS L SL++
Sbjct: 844 RTLNLSHNP------ITLQGLRPLELSRTLTSLDVSRIGC-GDRGALLLSKNRALTSLKL 896
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
+ + +G L + L L+L G + A +L+ G L LN++ C+L D+
Sbjct: 897 GFNGIGSAGAQGLTANRTLISLDLRGNTIDVAAATALAHTGRLGSLNVSDCKLDDEAASA 956
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
++ +L L++ N ++ + L G L SLN+ IG +G L +L L+
Sbjct: 957 LAESLTLTALDVSMNRLSSQAARALAGNATLTSLNISHNHIGPDGAQALAESTSLTFLDA 1016
Query: 308 SDTQVGSSGLRHLSGLTNLE 327
+G +G R L T ++
Sbjct: 1017 RANDIGEAGARALENNTRMQ 1036
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 97/194 (50%), Gaps = 25/194 (12%)
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
+ E + +L GL LESLN+ IGD G L +L+ L ++ +G++G R L+
Sbjct: 143 SSEAIAYLAGLP-LESLNVAGADIGDGGARLLAANPSLRALNAANGGIGAAGARALAESP 201
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
L S++LS GI D R LAG SL +L + +TD G AL LT LDL G I
Sbjct: 202 VLTSLDLSQNGIGDEGARALAGSRSLTNLAVLNCLVTDVGARALAGNRTLTALDL-GNLI 260
Query: 385 TDSG-----AAYLRNF--------------KNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
T++G AAY R ++L SL I G DAGV+ + S+LT L
Sbjct: 261 TETGNELEQAAYDRTANEITAQGAWALAQNRSLTSLSIQGNLCGDAGVQALAGSSTLTSL 320
Query: 426 NLSQNCNLTDKTLE 439
N++ TD TLE
Sbjct: 321 NVA----YTDMTLE 330
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 13/184 (7%)
Query: 315 SGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA---RQITDTGLAALTS 370
+ L L LES LSF G +S LR L S++ L+L +++ GLA L
Sbjct: 617 AALGRLQNYPALES--LSFHGHLSIEDLRALP--PSVRHLDLSGCTGAAVSEAGLADLAR 672
Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
L LDL RI D L + +L SL + G + DAG + + + LT LN+S N
Sbjct: 673 RP-LASLDLSRTRIGDREVQALASSASLTSLNLSGNRIGDAGAQALGRNTVLTSLNVSAN 731
Query: 431 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES---CKVTANDIK 487
+ D ++ ++G L SL + RI AG+ L LRSL + S + +A ++
Sbjct: 732 P-IGDTGVQALAGSRSLTSLELRGIRIGEAGIAALASNTVLRSLDISSNDLSEQSAAELA 790
Query: 488 RLQS 491
R Q+
Sbjct: 791 RNQT 794
>gi|343421695|emb|CCD18730.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
Length = 582
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 133/454 (29%), Positives = 205/454 (45%), Gaps = 50/454 (11%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L +DLSG+ V D L + NL ++ C +SD + L + +L L +
Sbjct: 129 LRELDLSGTRVQDEVFYELSENPNLTKVNLRQCQGLSD--VSPLADIESLQELDLGLCRS 186
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I +G++ A L NL L+LE+ L L LE LN+ C + D + PLS
Sbjct: 187 IN-EGVQDLAELPNLRVLNLEKVNVPSDSLFELCKSRSLEKLNLSSCKRLLD--VSPLSE 243
Query: 179 LTNLKSLQIS--CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ L L +S CS T G++ L LQ L +LNL VT L LS SL LNL+
Sbjct: 244 IKTLVELDLSLCCSLFT--GVSELGKLQCLRILNLRNTAVTDHSLPGLSESDSLEILNLS 301
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
C+ G ++ LK + +L L+L +C +G+ +L
Sbjct: 302 SCR--------------------GLTNVSP-----LKEIKSLVQLDLSNCPALRDGIGSL 336
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL 355
L L L+L +T + + LR + +LE ++ S T +SD + ++ L++L LNL
Sbjct: 337 VALPFLCTLKLRNTAITNESLRDICESESLEELDASSCTALSD--VFHISVLNTLVELNL 394
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR--SLEICGGGLTDAGV 413
G+ A+ SL L LD+ G IT+ LR +L SL C LTD V
Sbjct: 395 SFCPNLVKGMEAIASLPFLRALDISGTPITNHCLRGLRKSNSLETVSLRSC-NNLTD--V 451
Query: 414 KHIKDLSSLTLLNLSQNCNLT-DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 472
++ +S TLL L C ++ K + + L L LN+ +R + + L ++L
Sbjct: 452 FYLSKIS--TLLRLDLGCCISLQKGVGTLGKLPRLRILNLEGTRAANDWIIGLSTSRSLA 509
Query: 473 SLTLESCKVTAN-----DIKRLQSRDLPNLVSFR 501
L L SC ++ +I+ L+ D+ N VS R
Sbjct: 510 VLILSSCLALSDVSLLANIEPLEELDISNCVSIR 543
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 158/331 (47%), Gaps = 35/331 (10%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
+ GL NL+ L +S ++V D L LT +NL C + + L+ + SL L+L
Sbjct: 123 IGGLKNLRELDLSGTRVQDEVFYELSENPNLTKVNLRQCQGLSD-VSPLADIESLQELDL 181
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
C+ ++G + +++ +L+VLNL + + L L +LE LNL SC + L++
Sbjct: 182 GLCRSINEGVQDLAELPNLRVLNLEKVNVPSDSLFELCKSRSLEKLNLSSC----KRLLD 237
Query: 296 LTGLCNLKCLELSDTQVGSS---GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
++ L +K L D + S G+ L L L +NL T ++D SL L+ SL+
Sbjct: 238 VSPLSEIKTLVELDLSLCCSLFTGVSELGKLQCLRILNLRNTAVTDHSLPGLSESDSLEI 297
Query: 353 LNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
LNL + R +T+ ++ L + L LDL G L L +L++ +T+
Sbjct: 298 LNLSSCRGLTN--VSPLKEIKSLVQLDLSNCPALRDGIGSLVALPFLCTLKLRNTAITNE 355
Query: 412 GVK-----------------------HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
++ HI L++L LNLS NL K +E I+ L L
Sbjct: 356 SLRDICESESLEELDASSCTALSDVFHISVLNTLVELNLSFCPNLV-KGMEAIASLPFLR 414
Query: 449 SLNVSNSRITSAGLRHLKPLKNLRSLTLESC 479
+L++S + IT+ LR L+ +L +++L SC
Sbjct: 415 ALDISGTPITNHCLRGLRKSNSLETVSLRSC 445
>gi|255523032|ref|ZP_05390004.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
gi|255513147|gb|EET89415.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
Length = 676
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 103/329 (31%), Positives = 165/329 (50%), Gaps = 53/329 (16%)
Query: 124 MKAFAG---LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+K F+G L NL +L+L R + I+ + LK L+KL+S+++ + SD+ L LT
Sbjct: 170 IKDFSGIENLTNLKQLNL-RESEIND-ISELKNLVKLQSIDLSYNKI---SDISALKNLT 224
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK L + +KV D I+ L L L LNL P A N ++
Sbjct: 225 NLKKLNLGNNKVRD--ISVLSKLTNLQELNLGYIPYHDFETPDPEA---------NYNEI 273
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVN-LTG 298
SD + +L+ LNLG+ +I D L LKGL NL++L+L I D +VN L
Sbjct: 274 SD--ISALKNLTNLQTLNLGYTKIKD--LNALKGLNNLKTLDLSGNQISDISSIVNVLKE 329
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L +L L LS ++ S + L+ LT+L+ + L+ IS+ + +L GLS+L++L+L +
Sbjct: 330 LTSLNDLNLSTNEI--SNIDELNKLTSLKMLKLNSNKISN--INRLKGLSNLQTLDLSSN 385
Query: 359 QITDTG---------------------LAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
QI+DT + L LT L L+L+ +I+D A L+ N
Sbjct: 386 QISDTANTLKELNNLNDLNLSNNQISNIGELNKLTNLKALNLYYNKISDISA--LKGLSN 443
Query: 398 LRSLEICGGGLTDAGV-KHIKDLSSLTLL 425
L+ +++ ++D V +++ +L L LL
Sbjct: 444 LQMIDLSYNEISDISVFENLANLRELILL 472
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 116/214 (54%), Gaps = 21/214 (9%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVN 150
+ISD + L+ L+NL +L+ + + A GL NL LDL + + I +
Sbjct: 272 EISD--ISALKNLTNLQTLNL---GYTKIKDLNALKGLNNLKTLDLSGNQISDISSIVNV 326
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
LK L L LN+ N I++ D L+ LT+LK L+++ +K+ S I LKGL L L+
Sbjct: 327 LKELTSLNDLNLS-TNEISNID--ELNKLTSLKMLKLNSNKI--SNINRLKGLSNLQTLD 381
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L ++ ++L L +L LNL+ Q+S+ G + +K+ +LK LNL +N+I+D +
Sbjct: 382 LSSNQISDTA-NTLKELNNLNDLNLSNNQISNIG--ELNKLTNLKALNLYYNKISD--IS 436
Query: 271 HLKGLTNLESLNLDSCGIGD----EGLVNLTGLC 300
LKGL+NL+ ++L I D E L NL L
Sbjct: 437 ALKGLSNLQMIDLSYNEISDISVFENLANLRELI 470
>gi|449269519|gb|EMC80282.1| F-box/LRR-repeat protein 14, partial [Columba livia]
Length = 344
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 112/360 (31%), Positives = 172/360 (47%), Gaps = 73/360 (20%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS---------CSKVTDSGIA--- 198
++G+ +ESLN+ C +TD+ GL + +IS C ++TDS +
Sbjct: 19 IQGMADIESLNLSGCYNLTDN------GLGHAFVAEISSLRSLNLSLCKQITDSSLGRIA 72
Query: 199 -YLKGLQKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
YLKGL+ +L L GC L L L LNL C+
Sbjct: 73 QYLKGLE---VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCR---------------- 113
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
++D + HL G+T + EG + L L C +LSD
Sbjct: 114 -------HLSDVGIGHLAGMTRSAA----------EGCLGLEQLTLQDCQKLSDLS---- 152
Query: 316 GLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTS 370
L+HL+ GL L +NLSF G ISD L L+ +SSL+SLNL + I+DTG+ A+ S
Sbjct: 153 -LKHLARGLGRLRQLNLSFCGGISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHLAMGS 211
Query: 371 LTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNL 427
L L+ LD+ F ++ D AY+ + LRSL +C ++D G+ + ++ + L LN+
Sbjct: 212 LR-LSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNI 270
Query: 428 SQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 485
Q +TDK LELI+ L+ L +++ +RIT GL + L L+ L L ++T ++
Sbjct: 271 GQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWEMTESE 330
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 107/329 (32%), Positives = 166/329 (50%), Gaps = 36/329 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM ++ L+L C + G + + L S
Sbjct: 1 RGIRRVQILSLRRSLSYVIQGMA------DIESLNLSGCYNLTDNGLGHAFVAEISSLRS 54
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 55 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 112
Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A + +A G L L L CQ LSD + ++ +G L+ LNL F
Sbjct: 113 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCG 172
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
I+D L+HL +++L SLNL SC I D G+++L G L L++S +VG L +
Sbjct: 173 GISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 232
Query: 320 LS-GLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
++ GL L S++L ISD G R + + L++LN+ +ITD GL + L+ LT
Sbjct: 233 IAQGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 292
Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEI 403
+DL+G RIT G + L+ L +
Sbjct: 293 GIDLYGCTRITKRGLERITQLPCLKVLNL 321
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 167/315 (53%), Gaps = 32/315 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ ++++SL+ + C ++D GL H + +S+L SL+ IT + A + L
Sbjct: 19 IQGMADIESLNLSGCYNLTDNGLGHAFVAEISSLRSLNLSLCKQITDSSLGRIAQYLKGL 78
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 79 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 138
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K++D + +L +GL +L LNL C ++ A L LS + SL LNL C
Sbjct: 139 QLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCGGISDAGLLHLSHMSSLRSLNLRSCDN 198
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L SL+L SC I DEG+
Sbjct: 199 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINR 257
Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 258 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYG--CTRITKRGLERITQLP 314
Query: 349 SLKSLNLDARQITDT 363
LK LNL ++T++
Sbjct: 315 CLKVLNLGLWEMTES 329
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 126/246 (51%), Gaps = 34/246 (13%)
Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 322
++G+ ++ESLNL C G+G + ++ L +L C +++D+ +G ++L G
Sbjct: 19 IQGMADIESLNLSGCYNLTDNGLGHAFVAEISSLRSLNLSLCKQITDSSLGRIA-QYLKG 77
Query: 323 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 372
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 78 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 133
Query: 373 --GLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLN 426
GL L L +++D +L R LR L + CGG ++DAG+ H+ +SSL LN
Sbjct: 134 CLGLEQLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCGG-ISDAGLLHLSHMSSLRSLN 192
Query: 427 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 483
L N++D + L G L L+VS ++ L ++ + L LRSL+L SC ++
Sbjct: 193 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISD 252
Query: 484 NDIKRL 489
I R+
Sbjct: 253 EGINRM 258
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 49/201 (24%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAF 127
++D+GL+HL S+L+SL+ C ISD G+ HL G L+ L + + Q +
Sbjct: 174 ISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYI 233
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
A +GL L SL++ C+ + + + + L++L I
Sbjct: 234 A-----------------------QGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNI 270
Query: 188 -SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
C ++TD G+ + + L +LT ++L GC +++ G
Sbjct: 271 GQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITKRGL 307
Query: 246 EKFSKIGSLKVLNLGFNEITD 266
E+ +++ LKVLNLG E+T+
Sbjct: 308 ERITQLPCLKVLNLGLWEMTE 328
>gi|302802011|ref|XP_002982761.1| hypothetical protein SELMODRAFT_52320 [Selaginella moellendorffii]
gi|300149351|gb|EFJ16006.1| hypothetical protein SELMODRAFT_52320 [Selaginella moellendorffii]
Length = 516
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 145/505 (28%), Positives = 220/505 (43%), Gaps = 65/505 (12%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIAS-QGSSL 59
+LP +++ + ++L+ + LE F+ ++++L L V+ +WM I + +
Sbjct: 28 ILPAHLAESLLHQLLVKNLFSPPLLELFQ-LSVEELDLNGELSVDAEWMAYIGGFRHLRV 86
Query: 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNF-------CIQISDGGLEHLRGLSNLTSLS 112
L V+ S + +S + HL L F+F C +I++ GLEH+ L L L
Sbjct: 87 LKVE-SCKALNNSAIWHLSG-----KLHFSFERKLIDRCSKITNQGLEHILTLGKLKHLG 140
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL------VNLKGLMKLESLNIKWCN 166
I QG+ A L NL LDL GGL V+ +++L W +
Sbjct: 141 LS-ETGIGEQGIGKLAVLRNLSHLDL-------GGLPVTDSHVSSLLVLQLLIDLQLWGS 192
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
IT+ L G L+ L ++ +KV+ + + +++ LNL C V S+S
Sbjct: 193 SITNEGANMLRGFPRLEILNLAWTKVS-----VVPSMPRVSQLNLSHCVVL-----SVSE 242
Query: 227 LGS-LFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
GS L L L+ + D S + L VL L + L L L + L+L
Sbjct: 243 EGSALDQLRLSGATIQDPLRVLHSHSLPELSVLELSATNLA--ALTFLGSLKRVVKLDLS 300
Query: 285 SCGIGDEGLVNLTGLC--NLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSL 341
S +NL C NLK L+LSDT+VGS G+ L+G + LE ++L T I+D
Sbjct: 301 SMPSVSSDTMNLLAKCARNLKHLDLSDTRVGSEGVAVLTGHVPALEHLSLRGTSITDSVF 360
Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT----DSG---AAYLRN 394
L + L ++L TSLTG+ + T DS +L+
Sbjct: 361 GYLGLMPLLIDIDLSN-----------TSLTGMPVFEFTKVYYTCAPVDSSFWSVLHLQQ 409
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
NLR L++ +D K + L LT L L LTD +L +S L L SL
Sbjct: 410 LHNLRRLDLRRTRFSDKSCKRLACLVRLTHLLLCAEF-LTDASLHELSALPNLRSLAFQG 468
Query: 455 SRITSAGLRHLKPLKNLRSLTLESC 479
+ +T AGLR LKP L L L C
Sbjct: 469 TVLTDAGLRSLKPPPPLEELDLTDC 493
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 108/420 (25%), Positives = 183/420 (43%), Gaps = 53/420 (12%)
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKL--ESLNIKWCNCITDSDMK 174
++ A+ M G +L L +E C ++ + +L G + E I C+ IT+ ++
Sbjct: 69 SVDAEWMAYIGGFRHLRVLKVESCKALNNSAIWHLSGKLHFSFERKLIDRCSKITNQGLE 128
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+ L LK L +S + + + GI L L+ L+ L+L G PVT + + SL L L L
Sbjct: 129 HILTLGKLKHLGLSETGIGEQGIGKLAVLRNLSHLDLGGLPVTDSHVSSLLVLQLLIDLQ 188
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC---GIGDE 291
L ++++G L++LNL + +++ + + + LNL C + +E
Sbjct: 189 LWGSSITNEGANMLRGFPRLEILNLAWTKVSV-----VPSMPRVSQLNLSHCVVLSVSEE 243
Query: 292 G------------------LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS- 332
G +++ L L LELS T + + L L L + ++LS
Sbjct: 244 GSALDQLRLSGATIQDPLRVLHSHSLPELSVLELSATNLAA--LTFLGSLKRVVKLDLSS 301
Query: 333 FTGISDGSLRKLAGLS-SLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAA 390
+S ++ LA + +LK L+L ++ G+A LT + L HL L G ITDS
Sbjct: 302 MPSVSSDTMNLLAKCARNLKHLDLSDTRVGSEGVAVLTGHVPALEHLSLRGTSITDSVFG 361
Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIK---------DLSSLTLLNLSQNCN--------- 432
YL L +++ LT V D S ++L+L Q N
Sbjct: 362 YLGLMPLLIDIDLSNTSLTGMPVFEFTKVYYTCAPVDSSFWSVLHLQQLHNLRRLDLRRT 421
Query: 433 -LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 491
+DK+ + ++ L L L + +T A L L L NLRSL + +T ++ L+
Sbjct: 422 RFSDKSCKRLACLVRLTHLLLCAEFLTDASLHELSALPNLRSLAFQGTVLTDAGLRSLKP 481
>gi|124002318|ref|ZP_01687171.1| leucine-rich protein [Microscilla marina ATCC 23134]
gi|123992147|gb|EAY31515.1| leucine-rich protein [Microscilla marina ATCC 23134]
Length = 1282
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 142/478 (29%), Positives = 214/478 (44%), Gaps = 76/478 (15%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++L +D+ + +L L+SL+ F S LE+L L+ LT LS N
Sbjct: 219 LKQLELEENDI--KKIENLHHLPQLKSLNLRFN---SFEKLENLDALTELTELSLGYNGI 273
Query: 119 ITAQGMKA----------FAGLINLVKLD----LERCTRIHGGLVNLKGLMKLESLNIKW 164
+G++ F + L LD LE+ H G+ ++ L KL L
Sbjct: 274 SKIEGLEKLTKLKMLGLMFNRVTKLENLDTLTELEKLWMNHTGIKKIENLDKLTKLTHLS 333
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-ACLDS 223
C + ++ L LT L SL + +K+ S I L+ L LT L ++G V LD+
Sbjct: 334 LMCSKVTKIENLEALTQLTSLSLHATKI--SKIENLEALTNLTKLRVDGNKVAKIENLDN 391
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIG---SLKVLNLGFNEITDECLVHLKGLTNLES 280
L+ L L L + K +G L+ L+LG IT + +L+GL LE
Sbjct: 392 LTQLDDLM--------LGGNPISKIENLGHLIKLRKLDLGGLAITK--IENLEGLRTLEQ 441
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDG 339
L+L I E + NL GL L+ LEL T+V L HL LT L+ LS T I+
Sbjct: 442 LDLGGSQI--ETIENLEGLTGLQKLELRATKVSKIENLNHLPALTELD---LSETAIT-- 494
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD----SGAAYLRN- 394
+ L GL LK L+L +IT + L L+ L L L + ++ +G LR
Sbjct: 495 KIEGLTGLEGLKELSLSKNKITK--IENLAGLSKLEKLSLCASNLSKIENLTGLPKLREL 552
Query: 395 ---------FKNLRSLEICGG-GLTDAGVKHIKD---LSSLTLLNLSQNCNLTDKTLELI 441
+NLR L L + + HI+ + L LNLSQN + +E +
Sbjct: 553 CLEKNAIECLENLRGLPALKELDLNNNQITHIQPNALPTQLAELNLSQNQLI---KVEHL 609
Query: 442 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL-TLESCKVTANDIKRLQS-RDLPNL 497
+G+TGL L++S + I+ ++N L LE+ ++ N I RL++ LPNL
Sbjct: 610 AGVTGLTELDLSENNISK--------IENFEDLPALETLDLSYNKITRLENLTALPNL 659
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 111/385 (28%), Positives = 176/385 (45%), Gaps = 42/385 (10%)
Query: 80 CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLD 137
NL++L +++ + + L NLT L N I+ ++ LI L KLD
Sbjct: 364 IENLEALTNLTKLRVDGNKVAKIENLDNLTQLDDLMLGGNPISK--IENLGHLIKLRKLD 421
Query: 138 LERCTRIHGGLV-----NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
L GGL NL+GL LE L++ T ++ L GLT L+ L++ +KV
Sbjct: 422 L-------GGLAITKIENLEGLRTLEQLDLGGSQIET---IENLEGLTGLQKLELRATKV 471
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
S I L L LT L+L +T ++ L+ L L L+L++ +++ E + +
Sbjct: 472 --SKIENLNHLPALTELDLSETAITK--IEGLTGLEGLKELSLSKNKITK--IENLAGLS 525
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
L+ L+L + ++ + +L GL L L L+ I E L NL GL LK L+L++ Q+
Sbjct: 526 KLEKLSLCASNLSK--IENLTGLPKLRELCLEKNAI--ECLENLRGLPALKELDLNNNQI 581
Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
L T L +NLS + + LAG++ L L+L I+ + L
Sbjct: 582 THIQPNALP--TQLAELNLSQNQLI--KVEHLAGVTGLTELDLSENNISK--IENFEDLP 635
Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
L LDL +IT L NLR + I +T+ + L L+L QN
Sbjct: 636 ALETLDLSYNKITR--LENLTALPNLREVNIYQNQITEIATDAVT--RQLQELDLEQN-- 689
Query: 433 LTDKTLELISGLTGLVSLNVSNSRI 457
T+E++ TGL ++V N++I
Sbjct: 690 -QISTIEILVNFTGLSQVDVGNNQI 713
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 107/239 (44%), Gaps = 40/239 (16%)
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
LTNL+ L+L+ I E + NL L L+ L L + G +L+ LT L + LS
Sbjct: 106 LTNLQYLDLEENDI--EVIENLDHLARLEYLNLRGNAIEKIG--NLNALTQLVHLELS-- 159
Query: 335 GISDGSLRKLAGLSSLKSL-NLDARQITDTGLAALTSLTGLTHLDL----FGARITDSGA 389
SL ++ L+ LK L NLD R+ + L LT LT LDL FG
Sbjct: 160 ---SNSLERVENLNHLKHLQNLDLRENNIKKIENLAGLTALTRLDLGYNGFGK------I 210
Query: 390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 449
L N L+ LE+ + ++++ L L LNL N + + LE + LT L
Sbjct: 211 EGLHNLPRLKQLELEENDIKK--IENLHHLPQLKSLNLRFN---SFEKLENLDALTELTE 265
Query: 450 LNVSNSRITS-AGLRHLKPLK-------------NLRSLT-LESCKVTANDIKRLQSRD 493
L++ + I+ GL L LK NL +LT LE + IK++++ D
Sbjct: 266 LSLGYNGISKIEGLEKLTKLKMLGLMFNRVTKLENLDTLTELEKLWMNHTGIKKIENLD 324
>gi|397781344|ref|YP_006545817.1| Internalin-A [Methanoculleus bourgensis MS2]
gi|396939846|emb|CCJ37101.1| Internalin-A [Methanoculleus bourgensis MS2]
Length = 2759
Score = 85.5 bits (210), Expect = 6e-14, Method: Composition-based stats.
Identities = 89/254 (35%), Positives = 134/254 (52%), Gaps = 21/254 (8%)
Query: 137 DLERCTRIHG---GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
D+ TR+ G+ +L GL +L + + SD+ PL+GLTNL++L + ++V+
Sbjct: 1506 DMATLTRLSAAGRGIRDLSGLEYAVNLQTLYISNNQISDLSPLAGLTNLQTLWLQDNQVS 1565
Query: 194 D-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
D S +A L LQ+L L + V+ L+ L +L L L Q+SD + +
Sbjct: 1566 DLSPLAGLTNLQRLWLNQNQIRDVS-----PLAGLTNLRELLLAVNQISD--LSPLAGLT 1618
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
+L + L N+I+D L L GLTNL + L I D L L GL NL L++S Q+
Sbjct: 1619 NLGYVQLYRNQISD--LSPLAGLTNLGYVQLYRNQISD--LSPLAGLTNLYFLDISYNQI 1674
Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
S L L+ LTNL +++S+ ISD + LAGL+ L L+LD QI+D ++ L L
Sbjct: 1675 --SDLSPLASLTNLYFLDISYNQISD--ISPLAGLTRLSRLSLDNNQISD--ISPLAGLI 1728
Query: 373 GLTHLDLFGARITD 386
L L+L +I D
Sbjct: 1729 NLYVLNLNYNQIRD 1742
Score = 79.0 bits (193), Expect = 5e-12, Method: Composition-based stats.
Identities = 93/291 (31%), Positives = 136/291 (46%), Gaps = 39/291 (13%)
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIG---SLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
G + +NL +S++ S + +L+ L L N+++D L L GLTNL+ L L+
Sbjct: 1525 GLEYAVNLQTLYISNNQISDLSPLAGLTNLQTLWLQDNQVSD--LSPLAGLTNLQRLWLN 1582
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
I D + L GL NL+ L L+ Q+ S L L+GLTNL + L ISD L L
Sbjct: 1583 QNQIRD--VSPLAGLTNLRELLLAVNQI--SDLSPLAGLTNLGYVQLYRNQISD--LSPL 1636
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
AGL++L + L QI+D L+ L LT L LD+ +I+D + L + NL L+I
Sbjct: 1637 AGLTNLGYVQLYRNQISD--LSPLAGLTNLYFLDISYNQISD--LSPLASLTNLYFLDI- 1691
Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
I D+S L L +L + + IS L GL++L V N + +R
Sbjct: 1692 -------SYNQISDISPLAGLTRLSRLSLDNNQISDISPLAGLINLYVLN--LNYNQIRD 1742
Query: 465 LKPLK------------NLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 503
+ PL L L NDI+ LQSR + V + P+
Sbjct: 1743 ISPLVANSGLAGDDVYLQYNYLDLTPGSAAMNDIQTLQSRGV--YVVYEPQ 1791
Score = 50.1 bits (118), Expect = 0.002, Method: Composition-based stats.
Identities = 49/150 (32%), Positives = 71/150 (47%), Gaps = 36/150 (24%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QISD L L GL+NL + RN + AGL NL LD+
Sbjct: 1629 QISD--LSPLAGLTNLGYVQLYRNQI---SDLSPLAGLTNLYFLDISY------------ 1671
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
N I SD+ PL+ LTNL L IS ++++D I+ L GL +L+ L+L+
Sbjct: 1672 -------------NQI--SDLSPLASLTNLYFLDISYNQISD--ISPLAGLTRLSRLSLD 1714
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
++ + L+ L +L+ LNLN Q+ D
Sbjct: 1715 NNQISD--ISPLAGLINLYVLNLNYNQIRD 1742
Score = 49.7 bits (117), Expect = 0.003, Method: Composition-based stats.
Identities = 46/124 (37%), Positives = 65/124 (52%), Gaps = 10/124 (8%)
Query: 292 GLVNLTGL---CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
G+ +L+GL NL+ L L + S L L+GLT+L++++L ISD L LAGL+
Sbjct: 727 GIRDLSGLEYAVNLQHLYLQQNR-QISDLGPLAGLTDLQTLDLWNNQISD--LSPLAGLT 783
Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
+L L L + QI+D G L LT L L L+ +I D G L NL L + +
Sbjct: 784 NLSVLLLGSNQISDIG--PLAGLTDLQRLHLYDNQIRDIGP--LAGLTNLWELRLYNNQI 839
Query: 409 TDAG 412
D G
Sbjct: 840 RDIG 843
Score = 46.6 bits (109), Expect = 0.026, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 71/127 (55%), Gaps = 13/127 (10%)
Query: 122 QGMKAFAGL---INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+G++ +GL +NL L L++ +I L L GL L++L++ W N I SD+ PL+G
Sbjct: 726 RGIRDLSGLEYAVNLQHLYLQQNRQI-SDLGPLAGLTDLQTLDL-WNNQI--SDLSPLAG 781
Query: 179 LTNLKSLQISCSKVTDSG-IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
LTNL L + ++++D G +A L LQ+L L + + + L+ L +L+ L L
Sbjct: 782 LTNLSVLLLGSNQISDIGPLAGLTDLQRLHLYDNQ-----IRDIGPLAGLTNLWELRLYN 836
Query: 238 CQLSDDG 244
Q+ D G
Sbjct: 837 NQIRDIG 843
>gi|325108218|ref|YP_004269286.1| hypothetical protein Plabr_1653 [Planctomyces brasiliensis DSM
5305]
gi|324968486|gb|ADY59264.1| hypothetical protein Plabr_1653 [Planctomyces brasiliensis DSM
5305]
Length = 1046
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 113/245 (46%), Gaps = 23/245 (9%)
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
++ W NC D D+ LS +L+ + I+ +TD L Q+L + L G +T A
Sbjct: 312 DLDWMNC-NDDDVALLSDCPSLRRVYIASDAITDRAAELLADTQQLRHIRLTGNQLTEAS 370
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
L LS RCQ ++I +++ G I +E L L
Sbjct: 371 LRHLS-----------RCQ---------AEI--IELTGRGLKHIPNEIFSQLAKSETLRD 408
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
L L + D+ L L+ L +L+ L Q+ +GL+ L+ + L+ I L +D +
Sbjct: 409 LRLWDTALTDDNLQALSSLTSLRVLCADGHQLTPAGLKQLASMPFLQEIRLPGANWTDET 468
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
+ L L SL+ ++L IT+ GLA L ++T L +DL G IT+ G A L +L+
Sbjct: 469 IALLQPLKSLRRIDLADSAITNAGLAELANITSLEWIDLQGTDITNQGVAALAALNDLQR 528
Query: 401 LEICG 405
LE+ G
Sbjct: 529 LELRG 533
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 115/241 (47%), Gaps = 16/241 (6%)
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
+DD S SL+ + + + ITD L L + L + + L +L+ C
Sbjct: 319 NDDDVALLSDCPSLRRVYIASDAITDRAAELLADTQQLRHIRLTGNQLTEASLRHLS-RC 377
Query: 301 NLKCLELSDTQVGSSGLRH--------LSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
+ +EL+ GL+H L+ L + L T ++D +L+ L+ L+SL+
Sbjct: 378 QAEIIELT-----GRGLKHIPNEIFSQLAKSETLRDLRLWDTALTDDNLQALSSLTSLRV 432
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
L D Q+T GL L S+ L + L GA TD A L+ K+LR +++ +T+AG
Sbjct: 433 LCADGHQLTPAGLKQLASMPFLQEIRLPGANWTDETIALLQPLKSLRRIDLADSAITNAG 492
Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL-KPLKNL 471
+ + +++SL ++L Q ++T++ + ++ L L L + +R L KP ++
Sbjct: 493 LAELANITSLEWIDL-QGTDITNQGVAALAALNDLQRLELRGTRCNRGSWNTLSKPFPDI 551
Query: 472 R 472
R
Sbjct: 552 R 552
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 112/261 (42%), Gaps = 43/261 (16%)
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
G EK + L +N D+ + L +L + + S I D L L+
Sbjct: 303 GVEKNTNPADLDWMN-----CNDDDVALLSDCPSLRRVYIASDAITDRAAELLADTQQLR 357
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTG---ISDGSLRKLAGLSSLKSLNLDARQI 360
+ L+ Q+ + LRHLS E I L+ G I + +LA +L+ L L +
Sbjct: 358 HIRLTGNQLTEASLRHLS-RCQAEIIELTGRGLKHIPNEIFSQLAKSETLRDLRLWDTAL 416
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
TD L AL+SLT +LR L G LT AG+K + +
Sbjct: 417 TDDNLQALSSLT------------------------SLRVLCADGHQLTPAGLKQLASMP 452
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
L + L N TD+T+ L+ L L +++++S IT+AGL L + +L + L+
Sbjct: 453 FLQEIRLP-GANWTDETIALLQPLKSLRRIDLADSAITNAGLAELANITSLEWIDLQGTD 511
Query: 481 VTA---------NDIKRLQSR 492
+T ND++RL+ R
Sbjct: 512 ITNQGVAALAALNDLQRLELR 532
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 103/229 (44%), Gaps = 31/229 (13%)
Query: 50 DVIASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
D I + + LL+ + L+G+ +T++ L HL C I+++ GL+H+
Sbjct: 340 DAITDRAAELLADTQQLRHIRLTGNQLTEASLRHLSRCQAE-------IIELTGRGLKHI 392
Query: 103 RG--LSNLTSLSFRRN-----NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
S L R+ A+T ++A + L +L L + GL L +
Sbjct: 393 PNEIFSQLAKSETLRDLRLWDTALTDDNLQALSSLTSLRVLCADGHQLTPAGLKQLASMP 452
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L+ + + N TD + L L +L+ + ++ S +T++G+A L + L ++L+G
Sbjct: 453 FLQEIRLPGANW-TDETIALLQPLKSLRRIDLADSAITNAGLAELANITSLEWIDLQGTD 511
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
+T + +L+AL +L R +L C + GS L+ F +I
Sbjct: 512 ITNQGVAALAALN-----DLQRLELRGTRCNR----GSWNTLSKPFPDI 551
>gi|354478681|ref|XP_003501543.1| PREDICTED: insulin-like growth factor-binding protein complex acid
labile subunit [Cricetulus griseus]
Length = 603
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 120/434 (27%), Positives = 180/434 (41%), Gaps = 49/434 (11%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLR-----GLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
NL SLDF + + L L GL NL L RN + + F NL
Sbjct: 95 QNLSSLDF---LNLQGSWLNSLEPQALLGLQNLYHLHLERN-LLRSLAAGLFTHTPNLAS 150
Query: 136 LDLER--CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
L L R+ GL +GL L LN+ W + + DM GL NL+ L ++ +K
Sbjct: 151 LSLGNNLLGRLEDGL--FQGLGHLWDLNLGWNSLVVLPDMV-FQGLGNLRELVLAGNK-- 205
Query: 194 DSGIAYLKG-----------------------------LQKLTLLNLEGCPVTAACLDSL 224
+AYL+ L +L L L+ VTA +
Sbjct: 206 ---LAYLQPSLFCGLGELRELDLSRNALRSVKANVFIHLPRLQKLYLDRNFVTAVAPGAF 262
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
+ +L +L+L+ +++ + F + L VL L N IT K L LE L L
Sbjct: 263 LGMKALRWLDLSHNRVAGLLEDTFPGLLGLHVLRLAHNAITSLRPRTFKDLHFLEELQLG 322
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
I G GL L+ L L+D Q+ + SGL N+ +NLS + + R
Sbjct: 323 HNRIRQLGEKTFEGLGQLEVLTLNDNQIHEVKMGAFSGLFNVAVMNLSGNCLRNLPERVF 382
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
GLS L SL+L+ + L T L+GL L L G I+ + L L L++
Sbjct: 383 QGLSKLHSLHLEHSCLGRIRLHTFTGLSGLRRLFLRGNSISITEEQSLAGLSELLELDLT 442
Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
LT + + L L L LS N L+ + +++S L + L++S++R+ +
Sbjct: 443 ANQLTHLPRRLFQGLGQLEYLLLSNN-RLSALSEDVLSPLQRVFWLDISHNRLEALSEGL 501
Query: 465 LKPLKNLRSLTLES 478
PL LR L+L +
Sbjct: 502 FSPLGRLRYLSLRN 515
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 110/425 (25%), Positives = 166/425 (39%), Gaps = 38/425 (8%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
GL HL D + L +N + + D + GL NL L N Q F GL
Sbjct: 167 QGLGHLWDLN----LGWNSLVVLPDMVFQ---GLGNLRELVLAGNKLAYLQP-SLFCGLG 218
Query: 132 NLVKLDLERCTRIHGGLVNLKG-----LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L +LDL R L ++K L +L+ L + N +T G+ L+ L
Sbjct: 219 ELRELDLSR-----NALRSVKANVFIHLPRLQKLYLD-RNFVTAVAPGAFLGMKALRWLD 272
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
+S ++V GL L +L L +T+ + L L L L ++ G +
Sbjct: 273 LSHNRVAGLLEDTFPGLLGLHVLRLAHNAITSLRPRTFKDLHFLEELQLGHNRIRQLGEK 332
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
F +G L+VL L N+I + + GL N+ +NL + + GL L L
Sbjct: 333 TFEGLGQLEVLTLNDNQIHEVKMGAFSGLFNVAVMNLSGNCLRNLPERVFQGLSKLHSLH 392
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
L + +G L +GL+ L + L IS + LAGLS L L+L A Q+T
Sbjct: 393 LEHSCLGRIRLHTFTGLSGLRRLFLRGNSISITEEQSLAGLSELLELDLTANQLTHLPRR 452
Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
L L +L L R++ L + + L+I L L L L+
Sbjct: 453 LFQGLGQLEYLLLSNNRLSALSEDVLSPLQRVFWLDISHNRLEALSEGLFSPLGRLRYLS 512
Query: 427 LSQNCNLTDKTLELISGLTGLVSL----NVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
L N +L+ S GL L N + R PLK LR L++ +
Sbjct: 513 LRNN------SLQTFSPQPGLERLWLDANPWDCRC---------PLKALRDFALQNPSIV 557
Query: 483 ANDIK 487
++
Sbjct: 558 PRFVQ 562
Score = 45.4 bits (106), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 112/255 (43%), Gaps = 42/255 (16%)
Query: 47 KWMDVIASQGSSLLS-----------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQIS 95
+W+D+ ++ + LL + L+ + +T KD L+ L +I
Sbjct: 269 RWLDLSHNRVAGLLEDTFPGLLGLHVLRLAHNAITSLRPRTFKDLHFLEELQLGHN-RIR 327
Query: 96 DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE-RCTRIHGGLVNLKGL 154
G + GL L L+ +N I M AF+GL N+ ++L C R V +GL
Sbjct: 328 QLGEKTFEGLGQLEVLTLN-DNQIHEVKMGAFSGLFNVAVMNLSGNCLRNLPERV-FQGL 385
Query: 155 MKLESLNIKWC-----------------------NCITDSDMKPLSGLTNLKSLQISCSK 191
KL SL+++ N I+ ++ + L+GL+ L L ++ ++
Sbjct: 386 SKLHSLHLEHSCLGRIRLHTFTGLSGLRRLFLRGNSISITEEQSLAGLSELLELDLTANQ 445
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL--NRCQLSDDGCEKFS 249
+T +GL +L L L ++A D LS L +F+L++ NR + +G FS
Sbjct: 446 LTHLPRRLFQGLGQLEYLLLSNNRLSALSEDVLSPLQRVFWLDISHNRLEALSEGL--FS 503
Query: 250 KIGSLKVLNLGFNEI 264
+G L+ L+L N +
Sbjct: 504 PLGRLRYLSLRNNSL 518
>gi|195029827|ref|XP_001987773.1| GH22100 [Drosophila grimshawi]
gi|193903773|gb|EDW02640.1| GH22100 [Drosophila grimshawi]
Length = 550
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 114/371 (30%), Positives = 187/371 (50%), Gaps = 62/371 (16%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 214 SPSLFNCLV-RRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 255
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQ 122
+V D L H D NL++LD + C QI+D L + + L NL +L IT
Sbjct: 256 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLKNLETLELGGCCNITNT 315
Query: 123 GMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCITDSD 172
G+ A GL L L+L C I G+ +L G ++LE L ++ C ++D
Sbjct: 316 GLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEFLGLQDCQRLSDEA 375
Query: 173 MKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ ++ GLT+LKS+ +S C VTDSG+ +L + KL LNL C D++S +G
Sbjct: 376 LGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDIGMA 428
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGI 288
+ L++ G + L++ F ++I+D+ L H+ +GL L SL+L+ C I
Sbjct: 429 Y--------LTEGG-------SGINCLDVSFCDKISDQALTHIAQGLFRLRSLSLNQCHI 473
Query: 289 GDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKL 344
D+G++ + L L+ L + +++ GL+ L+ L+NL++I+L T +S + +
Sbjct: 474 TDQGMLKIAKSLHELENLNIGQCSRITDKGLQTLAEDLSNLKTIDLYGCTQLSSKGIDII 533
Query: 345 AGLSSLKSLNL 355
L L+ LNL
Sbjct: 534 MKLPKLQKLNL 544
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 102/329 (31%), Positives = 167/329 (50%), Gaps = 36/329 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ G+ A +G N+ ++L H V+L L
Sbjct: 224 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLG-----HAFSVDLPNL--- 275
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
++L++ C ITD+ + ++ L NL++L++ C +T++G+ + GL+KL LNL C
Sbjct: 276 KTLDLSLCKQITDTSLGRIAQHLKNLETLELGGCCNITNTGLLLIAWGLKKLRHLNLRSC 335
Query: 215 PVTA-------ACLDSLSALGSLF--YLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A +A G+L +L L CQ LSD+ ++ + SLK +NL F
Sbjct: 336 WHISDQGIGHLAGFSRETAEGNLQLEFLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCV 395
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRH 319
+TD L HL + LE LNL SC I D G+ LT G + CL++S ++ L H
Sbjct: 396 SVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINCLDVSFCDKISDQALTH 455
Query: 320 LS-GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
++ GL L S++L+ I+D + K+A L L++LN+ +ITD GL L L+ L
Sbjct: 456 IAQGLFRLRSLSLNQCHITDQGMLKIAKSLHELENLNIGQCSRITDKGLQTLAEDLSNLK 515
Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEI 403
+DL+G +++ G + L+ L +
Sbjct: 516 TIDLYGCTQLSSKGIDIIMKLPKLQKLNL 544
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 105/339 (30%), Positives = 162/339 (47%), Gaps = 53/339 (15%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
G+ L SLN+ C + D ++ L NLK+L +S C ++TD+ + + + L+ L
Sbjct: 244 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLKNLET 303
Query: 209 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L GC L L L +LNL C +SD G IG L GF+ T
Sbjct: 304 LELGGCCNITNTGLLLIAWGLKKLRHLNLRSCWHISDQG------IGHLA----GFSRET 353
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
E +L L+ G+ D C LSD +G GLT+
Sbjct: 354 AE-----------GNLQLEFLGLQD-------------CQRLSDEALGHIA----QGLTS 385
Query: 326 LESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FG 381
L+SINLSF ++D L+ LA + L+ LNL + I+D G+A LT +G+ LD+ F
Sbjct: 386 LKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINCLDVSFC 445
Query: 382 ARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE 439
+I+D ++ + LRSL + +TD G+ I K L L LN+ Q +TDK L+
Sbjct: 446 DKISDQALTHIAQGLFRLRSLSLNQCHITDQGMLKIAKSLHELENLNIGQCSRITDKGLQ 505
Query: 440 -LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 476
L L+ L ++++ ++++S G+ + L L+ L L
Sbjct: 506 TLAEDLSNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 544
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 113/237 (47%), Gaps = 34/237 (14%)
Query: 274 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 324
G+ L SLNL C +G V+L L L C +++DT +G +HL L
Sbjct: 244 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLKNLE 302
Query: 325 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-----GLT 375
LE N++ TG+ L GL L+ LNL + I+D G+ L + G
Sbjct: 303 TLELGGCCNITNTGL----LLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNL 358
Query: 376 HLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 428
L+ G R++D ++ + +L+S L C +TD+G+KH+ + L LNL
Sbjct: 359 QLEFLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 417
Query: 429 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 482
N++D + L G +G+ L+VS +I+ L H+ + L LRSL+L C +T
Sbjct: 418 SCDNISDIGMAYLTEGGSGINCLDVSFCDKISDQALTHIAQGLFRLRSLSLNQCHIT 474
>gi|290993104|ref|XP_002679173.1| LRR_RI domain-containing protein [Naegleria gruberi]
gi|284092789|gb|EFC46429.1| LRR_RI domain-containing protein [Naegleria gruberi]
Length = 370
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 140/285 (49%), Gaps = 9/285 (3%)
Query: 197 IAYLKGLQKLTLL-NLEGCPVTAACLDS-----LSALGSLFYLNLNRCQLSDDGCEKFSK 250
I YL L L L+ NL+ + + LDS +S + SL L+LN ++SD+G + SK
Sbjct: 83 IGYL--LNSLCLMRNLQELYLVSKELDSNDAQVISEMKSLTKLDLNGNRISDEGVDFISK 140
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+ L L + N + DE ++G+ L +L + + + G ++ + NL L++S+
Sbjct: 141 MSGLTYLRIDSNAVHDEGAKSIQGMKGLRTLKVSNNSFFEVGFEAISQMGNLTKLDMSEN 200
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
+G G + + + NL S+ + + I ++ L + L L++ QI + G +
Sbjct: 201 SLGIEGTKSIGIMKNLTSLKIDYNHIGSEGVKYLNEMKQLTKLSIVENQIDEEGAKYIGE 260
Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
L LT LD+ + + GA + L L+I + + G + +L+ LT L+++ N
Sbjct: 261 LKQLTILDISFNYVGEKGAKSISTLNKLTMLDIIENNIGENGAISLSNLNQLTKLDINSN 320
Query: 431 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
N+ + + L L LN+S + I + ++ +KNL+SLT
Sbjct: 321 -NIGHLGAKSLVKLNQLKELNISYNNINDLEINIIRQMKNLKSLT 364
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 130/272 (47%), Gaps = 1/272 (0%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ NL+ L + ++ + + ++ LT L+L G ++ +D +S + L YL ++
Sbjct: 93 MRNLQELYLVSKELDSNDAQVISEMKSLTKLDLNGNRISDEGVDFISKMSGLTYLRIDSN 152
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ D+G + + L+ L + N + + + NL L++ +G EG ++
Sbjct: 153 AVHDEGAKSIQGMKGLRTLKVSNNSFFEVGFEAISQMGNLTKLDMSENSLGIEGTKSIGI 212
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
+ NL L++ +GS G+++L+ + L +++ I + + + L L L++
Sbjct: 213 MKNLTSLKIDYNHIGSEGVKYLNEMKQLTKLSIVENQIDEEGAKYIGELKQLTILDISFN 272
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
+ + G ++++L LT LD+ I ++GA L N L L+I + G K +
Sbjct: 273 YVGEKGAKSISTLNKLTMLDIIENNIGENGAISLSNLNQLTKLDINSNNIGHLGAKSLVK 332
Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
L+ L LN+S N N+ D + +I + L SL
Sbjct: 333 LNQLKELNISYN-NINDLEINIIRQMKNLKSL 363
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 121/256 (47%), Gaps = 7/256 (2%)
Query: 52 IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111
+ S+ SL +DL+G+ ++D G+ + S L L + + D G + ++G+ L +L
Sbjct: 113 VISEMKSLTKLDLNGNRISDEGVDFISKMSGLTYLRID-SNAVHDEGAKSIQGMKGLRTL 171
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDL-ERCTRIHGGLVNLKGLMK-LESLNIKWCNCIT 169
NN+ G +A + + NL KLD+ E I G G+MK L SL I + N I
Sbjct: 172 KV-SNNSFFEVGFEAISQMGNLTKLDMSENSLGIEG--TKSIGIMKNLTSLKIDY-NHIG 227
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
+K L+ + L L I +++ + G Y+ L++LT+L++ V S+S L
Sbjct: 228 SEGVKYLNEMKQLTKLSIVENQIDEEGAKYIGELKQLTILDISFNYVGEKGAKSISTLNK 287
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L L++ + ++G S + L L++ N I L L L+ LN+ I
Sbjct: 288 LTMLDIIENNIGENGAISLSNLNQLTKLDINSNNIGHLGAKSLVKLNQLKELNISYNNIN 347
Query: 290 DEGLVNLTGLCNLKCL 305
D + + + NLK L
Sbjct: 348 DLEINIIRQMKNLKSL 363
>gi|291239173|ref|XP_002739507.1| PREDICTED: F-box and leucine-rich repeat protein 20-like
[Saccoglossus kowalevskii]
Length = 794
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 131/492 (26%), Positives = 222/492 (45%), Gaps = 87/492 (17%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFC 91
LQDL + + GVND M IA S LL +++S +++ D+ L L + C+NLQ L +C
Sbjct: 319 LQDLNISECSGVNDDMMKDIAEGCSILLYLNISHTNIADASLRVLSRCCANLQYLSLAYC 378
Query: 92 IQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148
+ SD GL++L RG L L IT +G + + E C+ I
Sbjct: 379 KRFSDKGLQYLSHSRGCRKLIYLDLSGCTQITQEGYRNMS----------EGCSNIQSIF 428
Query: 149 VNLKGLMKLESLNIKWCNC-------------ITDSDMKPLSGLTNLKSLQIS-CSKVTD 194
+N +K E L+ C ++DS +K L+ L+ +++ ++++D
Sbjct: 429 LNDNNTLKDECLSAVTSKCHNIRSMSLLGTPHLSDSAIKTLALNRRLQKIRMEGNNRISD 488
Query: 195 SGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKI 251
GI +L K L + L CP +T L SLS ++ LN+ C ++SD G +
Sbjct: 489 LGIKHLAKYCHDLRHVYLSDCPRLTDTALKSLSNCRNVSVLNIADCVRISDSGVRQ---- 544
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
+V + LNL +C + +SD
Sbjct: 545 -----------------MVEGPSGPKIRELNLTNC------------------VRVSDVS 569
Query: 312 VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
+ LR + NL + F I+D + L + SL S+++ +TD+GLA+L +
Sbjct: 570 I----LRIMQKCHNLSYASFCFCEHITDAGVELLGSMPSLMSVDISGCNVTDSGLASLGN 625
Query: 371 LTGLTHLDLFGA---RITDSG-AAYLRNFKNLRSLEICG-GGLTDAGVKHIKD-LSSLTL 424
L LD+ A +ITD G + + ++L L++ LTD+ +K++ L +
Sbjct: 626 NPRL--LDVTIAECYQITDLGIQKFAQQCRDLERLDVSHCSSLTDSAIKNLAFCCRRLVV 683
Query: 425 LNLSQNCNLTDKTLELISGLTG-LVSLNVSNS-RITSAGLRHL-KPLKNLRSLTLESCK- 480
LNL+ LTD +++ +SG+ L SL++S ++ LR+L K K ++ L + C+
Sbjct: 684 LNLTGCQLLTDLSIQYLSGVCHYLHSLDISGCVHVSDKSLRYLRKGCKRIKVLVMLYCRN 743
Query: 481 VTANDIKRLQSR 492
VT +LQ +
Sbjct: 744 VTKTAYLKLQGK 755
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 150/319 (47%), Gaps = 37/319 (11%)
Query: 181 NLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLS-ALGSLFYLNLNR 237
NL+ L IS CS V D + + +G L LN+ + A L LS +L YL+L
Sbjct: 318 NLQDLNISECSGVNDDMMKDIAEGCSILLYLNISHTNIADASLRVLSRCCANLQYLSLAY 377
Query: 238 CQ-LSDDGCEKFSK-IGSLKVLNL---GFNEITDECLVHL-KGLTNLESLNL-DSCGIGD 290
C+ SD G + S G K++ L G +IT E ++ +G +N++S+ L D+ + D
Sbjct: 378 CKRFSDKGLQYLSHSRGCRKLIYLDLSGCTQITQEGYRNMSEGCSNIQSIFLNDNNTLKD 437
Query: 291 EGLVNLTGLC-NLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGL 347
E L +T C N++ + L T + S ++ L+ L+ I + ISD ++ LA
Sbjct: 438 ECLSAVTSKCHNIRSMSLLGTPHLSDSAIKTLALNRRLQKIRMEGNNRISDLGIKHLAKY 497
Query: 348 -SSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEIC 404
L+ + L D ++TDT L +L++ ++ L++ RI+DSG + +
Sbjct: 498 CHDLRHVYLSDCPRLTDTALKSLSNCRNVSVLNIADCVRISDSGVRQMVEGPS------- 550
Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNC-NLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
G + + + + +S +++L + Q C NL+ + IT AG+
Sbjct: 551 GPKIRELNLTNCVRVSDVSILRIMQKCHNLSYASFCFCE-------------HITDAGVE 597
Query: 464 HLKPLKNLRSLTLESCKVT 482
L + +L S+ + C VT
Sbjct: 598 LLGSMPSLMSVDISGCNVT 616
>gi|343416403|emb|CCD20380.1| leucine-rich repeat protein [Trypanosoma vivax Y486]
Length = 1256
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 144/495 (29%), Positives = 224/495 (45%), Gaps = 44/495 (8%)
Query: 32 ALQDLCLGQYPGVNDKWM-DVIASQGSSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFN 89
LQ+LCL + V+D ++ D+ + LS++ S + +TD S L ++ +L+ LD N
Sbjct: 372 TLQELCLAEV-SVDDAFLRDLTCHERLRELSLN-SCTRITDVSPLARMR---SLEMLDLN 426
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
C I G L L GL+ L L R+ + A ++ L +L L CTRI +
Sbjct: 427 GCTGIVRG-LHELCGLTTLQELYLRQMSVDDAL-LRDLTCHERLRELSLNSCTRI-TDVS 483
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
L + LE L++ C I + L GLT L+ L + V D+ + L ++L L
Sbjct: 484 PLARMRSLEMLDLNGCTGIVRG-LHELCGLTTLQELYLRQMSVDDALLRDLTCHERLREL 542
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
+L C + L+ + SL LNLN C G + +L+ L L + D L
Sbjct: 543 SLNSCTRITD-VSPLARMRSLEILNLNDCTGIVRGLHVLCGLTTLQKLCLANVNVDDAFL 601
Query: 270 VHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
L L L+L+SC I D + L + +L+ L+L+D GL L GLT L+
Sbjct: 602 RDLTCHERLRELSLNSCTRITD--VSPLARMRSLENLDLNDCTGIVRGLHVLCGLTTLQE 659
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDT----------------------GL 365
+ L + D LR L L+ L+L++ +ITD GL
Sbjct: 660 LCLRQLSVDDAFLRDLTCHERLRRLSLNSCTRITDVSPLARMRSLEILDLNGCTGIVRGL 719
Query: 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTL 424
L LT L L L + D+ L + LR L + +TD V + + SL +
Sbjct: 720 HVLCGLTTLQELCLANVNVDDAFVRDLTCHERLRRLSLNSCTRITD--VSPLARMRSLEM 777
Query: 425 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC-KVT- 482
LNL+ +C + L + GLT L L + + A LR L + LR L+L SC ++T
Sbjct: 778 LNLN-DCTGIVRGLHELCGLTTLQELYLPKVYVDDAFLRDLTCHERLRRLSLNSCTRITD 836
Query: 483 ANDIKRLQSRDLPNL 497
+ + R++S ++ NL
Sbjct: 837 VSPLARMRSLEMLNL 851
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 142/494 (28%), Positives = 223/494 (45%), Gaps = 42/494 (8%)
Query: 32 ALQDLCLGQYPGVNDKWM-DVIASQGSSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFN 89
LQ+LCL Q V+D ++ D+ + LS++ S + +TD S L ++ +L+ LD N
Sbjct: 656 TLQELCLRQL-SVDDAFLRDLTCHERLRRLSLN-SCTRITDVSPLARMR---SLEILDLN 710
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
C I G L L GL+ L L N A ++ L +L L CTRI +
Sbjct: 711 GCTGIVRG-LHVLCGLTTLQELCLANVNVDDA-FVRDLTCHERLRRLSLNSCTRI-TDVS 767
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
L + LE LN+ C I + L GLT L+ L + V D+ + L ++L L
Sbjct: 768 PLARMRSLEMLNLNDCTGIVRG-LHELCGLTTLQELYLPKVYVDDAFLRDLTCHERLRRL 826
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
+L C + L+ + SL LNLN C G + + +L+ L L + D L
Sbjct: 827 SLNSCTRITD-VSPLARMRSLEMLNLNGCTGIVRGLHELCGLTTLQELYLRQMSVDDAFL 885
Query: 270 VHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
L L L+L+SC I D + L + +L+ L+L+D GL L GLT L+
Sbjct: 886 RDLTCHERLRRLSLNSCTRITD--VSPLARMRSLEMLDLNDCTGIVRGLHELCGLTTLQE 943
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDS 387
+ L+ + D LR L L+ L+L++ +ITD ++ L + L LDL G
Sbjct: 944 LCLANVNVDDAFLRDLTCHERLRELSLNSCTRITD--VSPLARMRSLEKLDLNGCTGIVR 1001
Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVK-----------------HIKDLSSLTLLNLSQN 430
G L L+ L + + DA ++ I D+S L + +N
Sbjct: 1002 GLHVLCGLTTLQELYLRQMSVDDALLRDLTCHERLRRLSLNSCTRITDVSPLARMRSLEN 1061
Query: 431 CNLTDKT-----LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC-KVT-A 483
+L T L ++ GLT L L + + A LR L + LR L+L SC ++T
Sbjct: 1062 MDLNGCTGIVRGLHVLCGLTTLQELYLRQMSVDDAFLRDLTCHERLRKLSLNSCTRITDV 1121
Query: 484 NDIKRLQSRDLPNL 497
+ + R++S ++ +L
Sbjct: 1122 SPLARMRSLEMLDL 1135
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 141/496 (28%), Positives = 230/496 (46%), Gaps = 46/496 (9%)
Query: 32 ALQDLCLGQYPGVNDKWM-DVIASQGSSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFN 89
LQ+LCL V+D ++ D+ + LS++ S + +TD S L ++ +L+ L+ N
Sbjct: 727 TLQELCLANV-NVDDAFVRDLTCHERLRRLSLN-SCTRITDVSPLARMR---SLEMLNLN 781
Query: 90 FCIQISDGGLEHLRGLSNLTSL-------------------SFRR---NNAITAQGMKAF 127
C I G L L GL+ L L RR N+ +
Sbjct: 782 DCTGIVRG-LHELCGLTTLQELYLPKVYVDDAFLRDLTCHERLRRLSLNSCTRITDVSPL 840
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
A + +L L+L CT I GL L GL L+ L ++ + + D+ ++ L+ L+ L +
Sbjct: 841 ARMRSLEMLNLNGCTGIVRGLHELCGLTTLQELYLRQMS-VDDAFLRDLTCHERLRRLSL 899
Query: 188 -SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
SC+++TD ++ L ++ L +L+L C L L L +L L L + D
Sbjct: 900 NSCTRITD--VSPLARMRSLEMLDLNDCTGIVRGLHELCGLTTLQELCLANVNVDDAFLR 957
Query: 247 KFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
+ L+ L+L ITD + L + +LE L+L+ C GL L GL L+ L
Sbjct: 958 DLTCHERLRELSLNSCTRITD--VSPLARMRSLEKLDLNGCTGIVRGLHVLCGLTTLQEL 1015
Query: 306 ELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
L V + LR L+ L ++L S T I+D S LA + SL++++L+ G
Sbjct: 1016 YLRQMSVDDALLRDLTCHERLRRLSLNSCTRITDVS--PLARMRSLENMDLNGCTGIVRG 1073
Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLT 423
L L LT L L L + D+ L + LR L + +TD V + + SL
Sbjct: 1074 LHVLCGLTTLQELYLRQMSVDDAFLRDLTCHERLRKLSLNSCTRITD--VSPLARMRSLE 1131
Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC-KVT 482
+L+L+ C + L ++ GLT L L + + A LR L + LR L+L SC ++T
Sbjct: 1132 MLDLN-GCTGIVRGLHVLCGLTTLQELYLRQMCVDDAFLRDLTCHERLRRLSLNSCTRIT 1190
Query: 483 -ANDIKRLQSRDLPNL 497
+ + R++S ++ +L
Sbjct: 1191 DVSPLARMRSLEMLDL 1206
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 118/420 (28%), Positives = 180/420 (42%), Gaps = 64/420 (15%)
Query: 132 NLVKLDLERCT---RIH---GGL----------------VNLKGLMKLESLNIKWCNCIT 169
+L+KL +E+C+ R+H GGL V++ GL KL ++IK N +
Sbjct: 227 SLIKLSVEQCSGKIRLHSAAGGLLLLEEVHLGGFNSIENVDIYGLPKLNKISIKGMNEVK 286
Query: 170 D---------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL--------- 211
+ ++ + +T LKS++I+ K I K QK T+ N
Sbjct: 287 EIRITGCEHLQSIEGVENITQLKSIKINKQKTEQDAI-LTKQKQKNTITNKHTKQDRKQQ 345
Query: 212 -----------EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL- 259
+ C + L L L +L L L + D + L+ L+L
Sbjct: 346 AQQKINNAGKNQKCVIHG--LHELCGLTTLQELCLAEVSVDDAFLRDLTCHERLRELSLN 403
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
ITD + L + +LE L+L+ C GL L GL L+ L L V + LR
Sbjct: 404 SCTRITD--VSPLARMRSLEMLDLNGCTGIVRGLHELCGLTTLQELYLRQMSVDDALLRD 461
Query: 320 LSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
L+ L ++L S T I+D S LA + SL+ L+L+ GL L LT L L
Sbjct: 462 LTCHERLRELSLNSCTRITDVS--PLARMRSLEMLDLNGCTGIVRGLHELCGLTTLQELY 519
Query: 379 LFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
L + D+ L + LR L + +TD V + + SL +LNL+ +C +
Sbjct: 520 LRQMSVDDALLRDLTCHERLRELSLNSCTRITD--VSPLARMRSLEILNLN-DCTGIVRG 576
Query: 438 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 497
L ++ GLT L L ++N + A LR L + LR L+L SC + + R L NL
Sbjct: 577 LHVLCGLTTLQKLCLANVNVDDAFLRDLTCHERLRELSLNSCTRITDVSPLARMRSLENL 636
>gi|320168558|gb|EFW45457.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 828
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 127/273 (46%), Gaps = 7/273 (2%)
Query: 116 NNAITAQGMKAFAGLINLVKLDL--ERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSD 172
NN IT+ AF GL L +L L + + I +L L+ L + N IT +
Sbjct: 118 NNQITSISANAFVGLTALTQLLLYNNQISSIPASAWADLNTLINLS----LYQNRITSIN 173
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
L+ LT LK+L + +++T GL LT L ++ P+T+ + ++L +L
Sbjct: 174 DASLTSLTALKTLILDNNQITSVPANAFAGLTSLTYLTVQSNPITSISAGAFASLSALTC 233
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L L+ QL + F+ + +L +LNL N++T GL L L L I
Sbjct: 234 LYLSSNQLVSIPADAFTDLTALTLLNLRDNQLTSISANAFTGLVALTQLQLPGNQITSIA 293
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
TGL L L+L+ Q S L+GL L ++ L I+ AG+++L++
Sbjct: 294 ADAFTGLNALSFLDLTSNQFSSIPSSALTGLPALSTLILYTNSITSIPANAFAGMTALQA 353
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
+ L QIT +A T LT +T+L L G +T
Sbjct: 354 VVLSTNQITSIAASAFTGLTAVTYLVLDGNPVT 386
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 100/235 (42%), Gaps = 7/235 (2%)
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS---CGIGDEGLVNLTGLCNLK 303
F+ + +L L+L N++T + LT L+ L LD+ I V LT L L
Sbjct: 80 AFTGLTALTTLHLYANQLTSIPAYNFTVLTALKDLRLDNNQITSISANAFVGLTALTQLL 139
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
+ + +S L+ L NL T I+D SL L ++LK+L LD QIT
Sbjct: 140 LYNNQISSIPASAWADLNTLINLSLYQNRITSINDASLTSL---TALKTLILDNNQITSV 196
Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
A LT LT+L + IT A + L L + L DL++LT
Sbjct: 197 PANAFAGLTSLTYLTVQSNPITSISAGAFASLSALTCLYLSSNQLVSIPADAFTDLTALT 256
Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 478
LLNL N LT + +GL L L + ++ITS L L L L S
Sbjct: 257 LLNLRDN-QLTSISANAFTGLVALTQLQLPGNQITSIAADAFTGLNALSFLDLTS 310
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 132/309 (42%), Gaps = 2/309 (0%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
GL L +L++ + N +T + LT LK L++ +++T GL LT L
Sbjct: 81 FTGLTALTTLHL-YANQLTSIPAYNFTVLTALKDLRLDNNQITSISANAFVGLTALTQLL 139
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L +++ + + L +L L+L + +++ + + +LK L L N+IT
Sbjct: 140 LYNNQISSIPASAWADLNTLINLSLYQNRITSINDASLTSLTALKTLILDNNQITSVPAN 199
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
GLT+L L + S I L L CL LS Q+ S + LT L +N
Sbjct: 200 AFAGLTSLTYLTVQSNPITSISAGAFASLSALTCLYLSSNQLVSIPADAFTDLTALTLLN 259
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
L ++ S GL +L L L QIT A T L L+ LDL + + ++
Sbjct: 260 LRDNQLTSISANAFTGLVALTQLQLPGNQITSIAADAFTGLNALSFLDLTSNQFSSIPSS 319
Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
L L +L + +T +++L + LS N +T +GLT + L
Sbjct: 320 ALTGLPALSTLILYTNSITSIPANAFAGMTALQAVVLSTN-QITSIAASAFTGLTAVTYL 378
Query: 451 NVSNSRITS 459
+ + +T+
Sbjct: 379 VLDGNPVTT 387
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 102/261 (39%), Gaps = 10/261 (3%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
S + S L NL SL N I+D L L L L NN IT+ A
Sbjct: 146 SSIPASAWADLNTLINL-SLYQNRITSINDASLTSLTALKTL----ILDNNQITSVPANA 200
Query: 127 FAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
FAGL +L L ++ T I G L L L + N + + LT L
Sbjct: 201 FAGLTSLTYLTVQSNPITSISAGA--FASLSALTCLYLS-SNQLVSIPADAFTDLTALTL 257
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L + +++T GL LT L L G +T+ D+ + L +L +L+L Q S
Sbjct: 258 LNLRDNQLTSISANAFTGLVALTQLQLPGNQITSIAADAFTGLNALSFLDLTSNQFSSIP 317
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
+ + +L L L N IT G+T L+++ L + I TGL +
Sbjct: 318 SSALTGLPALSTLILYTNSITSIPANAFAGMTALQAVVLSTNQITSIAASAFTGLTAVTY 377
Query: 305 LELSDTQVGSSGLRHLSGLTN 325
L L V + GL N
Sbjct: 378 LVLDGNPVTTLPPGLFQGLPN 398
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 2/151 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
Q++ GL LT L N IT+ AF GL L LDL L
Sbjct: 264 QLTSISANAFTGLVALTQLQLPGNQ-ITSIAADAFTGLNALSFLDLTSNQFSSIPSSALT 322
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
GL L +L I + N IT +G+T L+++ +S +++T + GL +T L L+
Sbjct: 323 GLPALSTL-ILYTNSITSIPANAFAGMTALQAVVLSTNQITSIAASAFTGLTAVTYLVLD 381
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
G PVT L + YL++++ +S +
Sbjct: 382 GNPVTTLPPGLFQGLPNGLYLSVSQQYMSPN 412
>gi|290997297|ref|XP_002681218.1| leucine-rich repeat ribonuclease inhibitor family protein
[Naegleria gruberi]
gi|284094841|gb|EFC48474.1| leucine-rich repeat ribonuclease inhibitor family protein
[Naegleria gruberi]
Length = 342
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 108/217 (49%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
++ + L SL I +++ D G Y+ +++LT LN+ + +S + L L++
Sbjct: 124 VTEMKQLTSLNIRGNRIGDEGAKYISEMKQLTSLNIRENEIGDEGAKFISEMKQLTSLDI 183
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
++ D+G + S++ L LN+ + I E + + L LN+ IG EG
Sbjct: 184 RGNRIGDEGAKYISEMKQLTSLNIYYTLIGIEGAKFISEMKQLTLLNIYYNLIGIEGAKF 243
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
++ + L L++S+ ++G G + +S + L S+N+++ I D + ++ + L SLN+
Sbjct: 244 ISEMKQLTLLDISNNEIGIEGAKFISEMKQLTSLNINYNEIGDRGAKFISEMKQLTSLNI 303
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
D G ++ + LT LD+ RI D GA Y+
Sbjct: 304 SYNITGDRGAKFISEMKQLTSLDISNNRICDEGAKYI 340
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 112/242 (46%), Gaps = 25/242 (10%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
++ + L LN+ ++ D+G + S++ L LN+ NEI DE + + L SL++
Sbjct: 124 VTEMKQLTSLNIRGNRIGDEGAKYISEMKQLTSLNIRENEIGDEGAKFISEMKQLTSLDI 183
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
IGDEG ++ + L L + T +G G + +S + L +N+ +
Sbjct: 184 RGNRIGDEGAKYISEMKQLTSLNIYYTLIGIEGAKFISEMKQLTLLNIYYN--------- 234
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
L G+ G ++ + LT LD+ I GA ++ K L SL I
Sbjct: 235 LIGIE---------------GAKFISEMKQLTLLDISNNEIGIEGAKFISEMKQLTSLNI 279
Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
+ D G K I ++ LT LN+S N D+ + IS + L SL++SN+RI G +
Sbjct: 280 NYNEIGDRGAKFISEMKQLTSLNISYNIT-GDRGAKFISEMKQLTSLDISNNRICDEGAK 338
Query: 464 HL 465
++
Sbjct: 339 YI 340
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 104/214 (48%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+++LT LN+ G + +S + L LN+ ++ D+G + S++ L L++ N
Sbjct: 127 MKQLTSLNIRGNRIGDEGAKYISEMKQLTSLNIRENEIGDEGAKFISEMKQLTSLDIRGN 186
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
I DE ++ + L SLN+ IG EG ++ + L L + +G G + +S
Sbjct: 187 RIGDEGAKYISEMKQLTSLNIYYTLIGIEGAKFISEMKQLTLLNIYYNLIGIEGAKFISE 246
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
+ L +++S I + ++ + L SLN++ +I D G ++ + LT L++
Sbjct: 247 MKQLTLLDISNNEIGIEGAKFISEMKQLTSLNINYNEIGDRGAKFISEMKQLTSLNISYN 306
Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
D GA ++ K L SL+I + D G K+I
Sbjct: 307 ITGDRGAKFISEMKQLTSLDISNNRICDEGAKYI 340
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 103/208 (49%), Gaps = 9/208 (4%)
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
+T + L L + ++G G +++S + L S+N+ I D + ++ + L SL++
Sbjct: 124 VTEMKQLTSLNIRGNRIGDEGAKYISEMKQLTSLNIRENEIGDEGAKFISEMKQLTSLDI 183
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
+I D G ++ + LT L+++ I GA ++ K L L I + G K
Sbjct: 184 RGNRIGDEGAKYISEMKQLTSLNIYYTLIGIEGAKFISEMKQLTLLNIYYNLIGIEGAKF 243
Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
I ++ LTLL++S N + + + IS + L SLN++ + I G + + +K L SL
Sbjct: 244 ISEMKQLTLLDISNN-EIGIEGAKFISEMKQLTSLNINYNEIGDRGAKFISEMKQLTSLN 302
Query: 476 LESCKVTAN-------DIKRLQSRDLPN 496
+ S +T + ++K+L S D+ N
Sbjct: 303 I-SYNITGDRGAKFISEMKQLTSLDISN 329
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 102/228 (44%), Gaps = 26/228 (11%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I D G +++ + LTSL+ R N I +G K + + L LD I G
Sbjct: 139 RIGDEGAKYISEMKQLTSLNIRE-NEIGDEGAKFISEMKQLTSLD------IRG------ 185
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
N I D K +S + L SL I + + G ++ +++LTLLN+
Sbjct: 186 -------------NRIGDEGAKYISEMKQLTSLNIYYTLIGIEGAKFISEMKQLTLLNIY 232
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+ +S + L L+++ ++ +G + S++ L LN+ +NEI D +
Sbjct: 233 YNLIGIEGAKFISEMKQLTLLDISNNEIGIEGAKFISEMKQLTSLNINYNEIGDRGAKFI 292
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
+ L SLN+ GD G ++ + L L++S+ ++ G +++
Sbjct: 293 SEMKQLTSLNISYNITGDRGAKFISEMKQLTSLDISNNRICDEGAKYI 340
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 3/158 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D+ G+ + D G ++ + L SL+ + + I G + + + LT L+
Sbjct: 173 SEMKQLTSLDIRGNRIGDEGAKYISEMKQLTSLNIYYTL-IGIEGAKFISEMKQLTLLNI 231
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K + + L LD+ G + + +L SLNI + N I D
Sbjct: 232 YY-NLIGIEGAKFISEMKQLTLLDISNNEIGIEGAKFISEMKQLTSLNINY-NEIGDRGA 289
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
K +S + L SL IS + D G ++ +++LT L++
Sbjct: 290 KFISEMKQLTSLNISYNITGDRGAKFISEMKQLTSLDI 327
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 95/239 (39%), Gaps = 51/239 (21%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+++ +++ D G + + L SLD +I D G +++ + LTSL+
Sbjct: 149 SEMKQLTSLNIRENEIGDEGAKFISEMKQLTSLDIR-GNRIGDEGAKYISEMKQLTSLN- 206
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
I+ L+ ++G
Sbjct: 207 ------------------------------IYYTLIGIEG-------------------A 217
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L L I + + G ++ +++LTLL++ + +S + L L
Sbjct: 218 KFISEMKQLTLLNIYYNLIGIEGAKFISEMKQLTLLDISNNEIGIEGAKFISEMKQLTSL 277
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
N+N ++ D G + S++ L LN+ +N D + + L SL++ + I DEG
Sbjct: 278 NINYNEIGDRGAKFISEMKQLTSLNISYNITGDRGAKFISEMKQLTSLDISNNRICDEG 336
>gi|168700135|ref|ZP_02732412.1| hypothetical protein GobsU_11445 [Gemmata obscuriglobus UQM 2246]
Length = 120
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 74/120 (61%), Gaps = 3/120 (2%)
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
L LKGLT L +L + D G+ L+GL L LEL+ TQV +G++ LSGLT L +
Sbjct: 4 LAALKGLTQL---DLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
++L FT ++D ++ L+GL L LNL +TD G+ AL L GLT LDL R+TD+G
Sbjct: 61 LDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTDAG 120
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 368 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
L +L GLT LDLF ++TD G L K L LE+ +TDAGVK + L++LT L+L
Sbjct: 4 LAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTTLDL 63
Query: 428 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
+TD ++ +SGL L+ LN+ + +T AG++ L LK L L L +VT
Sbjct: 64 G-FTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVT 117
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 68/119 (57%), Gaps = 4/119 (3%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
L LKGL +L+ + K +TD +K LSGL L L+++ ++VTD+G+ L GL LT
Sbjct: 4 LAALKGLTQLDLFDTK----VTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALT 59
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
L+L VT A + +LS L L LNL ++D G + + + L +L+L F +TD
Sbjct: 60 TLDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTD 118
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 69/118 (58%)
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
L L L L+L DT+V G++ LSGL L + L+FT ++D ++ L+GL++L +L+
Sbjct: 3 ELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTTLD 62
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
L ++TD G+ AL+ L L L+L +TD+G L K L L++ +TDAG
Sbjct: 63 LGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTDAG 120
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 67/112 (59%)
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
++ L+ L L ++L T ++D +++L+GL L L L Q+TD G+ AL+ LT LT
Sbjct: 1 MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60
Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
LDL ++TD+G L K+L L + +TDAGVK + L LT+L+LS
Sbjct: 61 LDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLS 112
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 71/121 (58%), Gaps = 1/121 (0%)
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
+++LA L L L+L ++TD G+ L+ L GLT L+L ++TD+G L L +
Sbjct: 1 MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60
Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
L++ +TDAGVK + L L LNL +TD ++ ++GL GL L++S +R+T A
Sbjct: 61 LDLGFTKVTDAGVKALSGLKHLIQLNLGVTV-VTDAGVKALAGLKGLTILDLSFTRVTDA 119
Query: 461 G 461
G
Sbjct: 120 G 120
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 67/121 (55%), Gaps = 1/121 (0%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
MK A L L +LDL G+ L GL L L + + +TD+ +K LSGLT L
Sbjct: 1 MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQ-VTDAGVKALSGLTALT 59
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+L + +KVTD+G+ L GL+ L LNL VT A + +L+ L L L+L+ +++D
Sbjct: 60 TLDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTDA 119
Query: 244 G 244
G
Sbjct: 120 G 120
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 68/118 (57%)
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
+ L+AL L L+L +++D G ++ S + L L L F ++TD + L GLT L +
Sbjct: 1 MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
L+L + D G+ L+GL +L L L T V +G++ L+GL L ++LSFT ++D
Sbjct: 61 LDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTD 118
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 63/120 (52%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
MK L+ L L L + +KVTD G+ L GL+ LT L L VT A + +LS L +L
Sbjct: 1 MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L+L +++D G + S + L LNLG +TD + L GL L L+L + D G
Sbjct: 61 LDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTDAG 120
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 66/120 (55%)
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
++ + + L L+L ++TD + L GL L L L + D G+ L+GL L
Sbjct: 1 MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
L+L T+V +G++ LSGL +L +NL T ++D ++ LAGL L L+L ++TD G
Sbjct: 61 LDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTDAG 120
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
L L LD F +++D G++ L GL LT L +T G+KA +GL L
Sbjct: 3 ELAALKGLTQLDL-FDTKVTDVGVKELSGLKGLTRLELTFTQ-VTDAGVKALSGLTALTT 60
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
LDL G+ L GL L LN+ +TD+ +K L+GL L L +S ++VTD+
Sbjct: 61 LDLGFTKVTDAGVKALSGLKHLIQLNL-GVTVVTDAGVKALAGLKGLTILDLSFTRVTDA 119
Query: 196 G 196
G
Sbjct: 120 G 120
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++L+ + VTD+G+ L + L +LD F +++D G++ L GL +L L+
Sbjct: 34 LTRLELTFTQVTDAGVKALSGLTALTTLDLGFT-KVTDAGVKALSGLKHLIQLNLGV-TV 91
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRI 144
+T G+KA AGL L LDL TR+
Sbjct: 92 VTDAGVKALAGLKGLTILDLS-FTRV 116
>gi|198432493|ref|XP_002130800.1| PREDICTED: similar to F-box and leucine-rich repeat protein 13
[Ciona intestinalis]
Length = 798
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 135/499 (27%), Positives = 223/499 (44%), Gaps = 101/499 (20%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCS-NLQSLDFNFC 91
+QDL + GVND+ M IA +LL +++S +++TD L L C N+Q L +C
Sbjct: 321 VQDLNFSECKGVNDEVMRTIAESCPTLLYLNISHTEITDGTLRTLSRCCLNMQYLSLAYC 380
Query: 92 IQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFA----GLINLVKLDL------ 138
+ +D GL ++ +G LT + F ITAQG + A L ++V D+
Sbjct: 381 SKYTDRGLHYMASGKGCRKLTYIDFSGCLQITAQGFRHVAHGCTSLQSIVLNDMPSLTDS 440
Query: 139 ------ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK- 191
E+CT NL+ + + S N +TD K L+ L+ L+I ++
Sbjct: 441 CIISLVEKCT-------NLRSVSLIGSPN------LTDMAFKALAQAKKLQKLRIESNQN 487
Query: 192 VTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKF 248
+TD+ L K + + C +T L +LS L S+ LNL C ++SD G +
Sbjct: 488 ITDNTFKTLGKMCPYIGHFYVVDCQRLTDMMLKALSPLRSIIVLNLADCVRISDSGVRQ- 546
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLV-------NLTGLC 300
+V + + +NL +C + D L+ +LT LC
Sbjct: 547 --------------------MVEGPSGSKIREMNLTNCVRVSDVSLLRVAQRCHSLTHLC 586
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ- 359
C ++D +G+ L + L ++LS T I D L L S ++S+ + Q
Sbjct: 587 LCFCEHVTD-----AGIELLGSMPALLHVDLSGTNIKDQGLASLGVNSRIRSVVMSECQG 641
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKD 418
ITD GL F ++T+ L +L++ L+DA +K++
Sbjct: 642 ITDLGLQK------------FCQKVTE-----------LDTLDVSHCMSLSDAAIKNLAF 678
Query: 419 LSS-LTLLNLSQNCNLTDKTLELISGLTGLVS-LNVSNS-RITSAGLRHL-KPLKNLRSL 474
LT LN++ LTD +++ +SG+ + LN+S I+ +++L K K LRSL
Sbjct: 679 CCRMLTSLNVAGCPLLTDLSIQYLSGVCHYIHFLNLSGCIHISDRAVKYLRKGCKQLRSL 738
Query: 475 TLESCK-VTANDIKRLQSR 492
T+ C+ +T +RL SR
Sbjct: 739 TILYCRSITKITAQRLASR 757
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 114/484 (23%), Positives = 194/484 (40%), Gaps = 108/484 (22%)
Query: 29 RDCALQ-----DLC-LGQYPGVNDKWMDVI-ASQGSSLLSVDLSGSDVTDSGLIH-LKDC 80
R CA+Q DL LG+ V W + A S L+ S+VTD +I L+ C
Sbjct: 233 RKCAIQIFSFLDLMDLGRCARVCRAWKVITGAPTLWSHLNFSKVRSNVTDKMVIQCLQKC 292
Query: 81 -SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
L L+ C + + + N+ L+F + + M+ A E
Sbjct: 293 RPYLVHLNLQQCYSVHWPTFKSISECRNVQDLNFSECKGVNDEVMRTIA----------E 342
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT-NLKSLQIS-CSKVTDSGI 197
C L LNI ITD ++ LS N++ L ++ CSK TD G+
Sbjct: 343 SCP-------------TLLYLNISHTE-ITDGTLRTLSRCCLNMQYLSLAYCSKYTDRGL 388
Query: 198 AYL---KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
Y+ KG +KLT ++ GC +TA ++ GC I
Sbjct: 389 HYMASGKGCRKLTYIDFSGCLQITAQGFRHVA-----------------HGCTSLQSI-- 429
Query: 254 LKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
VLN +TD C++ L + TNL S++L IG L ++
Sbjct: 430 --VLN-DMPSLTDSCIISLVEKCTNLRSVSL----IGSPNLTDM---------------- 466
Query: 313 GSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSL--KSLNLDARQITDTGLAALT 369
+ L+ L+ + + S I+D + + L + +D +++TD L AL+
Sbjct: 467 ---AFKALAQAKKLQKLRIESNQNITDNTFKTLGKMCPYIGHFYVVDCQRLTDMMLKALS 523
Query: 370 SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
L + L+L RI+DSG + + G + + + + +S ++LL ++
Sbjct: 524 PLRSIIVLNLADCVRISDSGVRQMVEGPS-------GSKIREMNLTNCVRVSDVSLLRVA 576
Query: 429 QNCN------------LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
Q C+ +TD +EL+ + L+ +++S + I GL L +RS+ +
Sbjct: 577 QRCHSLTHLCLCFCEHVTDAGIELLGSMPALLHVDLSGTNIKDQGLASLGVNSRIRSVVM 636
Query: 477 ESCK 480
C+
Sbjct: 637 SECQ 640
>gi|291230586|ref|XP_002735244.1| PREDICTED: partner of paired-like [Saccoglossus kowalevskii]
Length = 396
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 155/298 (52%), Gaps = 24/298 (8%)
Query: 82 NLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDL 138
NLQSL+ + C ++D GL H +R + +LT L+ IT + A + NL LDL
Sbjct: 93 NLQSLNLSGCYNLTDVGLAHAFVREMPSLTVLNLSLCKQITDSSLGRIAQYLRNLEHLDL 152
Query: 139 ERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQIS 188
C I G L+ GL KL LN++ C ++DS + L+GLT L+ L +
Sbjct: 153 GGCCNITNTGLLLIAWGLTKLRYLNLRSCRHVSDSGIAHLAGLTKNDAGGTLFLQHLVLQ 212
Query: 189 -CSKVTDSGIA-YLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
C K+TD + +GL KL LNL C +T + + LS + SL LNL C +SD G
Sbjct: 213 DCQKLTDLALLNAARGLVKLESLNLSFCGGITDSGMVHLSRMPSLKELNLRSCDNISDIG 272
Query: 245 CEKFSKIGS-LKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT-GLC 300
++ G+ L+ L++ F +++ D L H+ +G+ +L S++L SC I D+G+ L L
Sbjct: 273 IAHLAEGGAYLRTLDVSFCDKVGDASLTHIAQGMYSLMSISLSSCPITDDGMARLVRTLR 332
Query: 301 NLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL 355
+LK L + +++ GL ++ L L I+L T I+ L K+ L L LNL
Sbjct: 333 DLKTLNIGQCSRITDEGLGLIATNLRKLSCIDLYGCTKITTVGLEKIMQLPCLSVLNL 390
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 92/277 (33%), Positives = 145/277 (52%), Gaps = 34/277 (12%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L +DL G ++T++GL+ + + L+ L+ C +SD G+ H
Sbjct: 132 ITDSSLGRIAQYLRNLEHLDLGGCCNITNTGLLLIAWGLTKLRYLNLRSCRHVSDSGIAH 191
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L GL+ +N+A G + L L L+ C ++ L+N +GL+KLES
Sbjct: 192 LAGLT--------KNDA---------GGTLFLQHLVLQDCQKLTDLALLNAARGLVKLES 234
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGC-PV 216
LN+ +C ITDS M LS + +LK L + SC ++D GIA+L +G L L++ C V
Sbjct: 235 LNLSFCGGITDSGMVHLSRMPSLKELNLRSCDNISDIGIAHLAEGGAYLRTLDVSFCDKV 294
Query: 217 TAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK 273
A L ++ + SL ++L+ C ++DDG + + + LK LN+G + ITDE L
Sbjct: 295 GDASLTHIAQGMYSLMSISLSSCPITDDGMARLVRTLRDLKTLNIGQCSRITDEGL---- 350
Query: 274 GL--TNLESLN-LDSCGIGDEGLVNLTGLCNLKCLEL 307
GL TNL L+ +D G V L + L CL +
Sbjct: 351 GLIATNLRKLSCIDLYGCTKITTVGLEKIMQLPCLSV 387
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 99/303 (32%), Positives = 162/303 (53%), Gaps = 26/303 (8%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKL 206
++G+ L+SLN+ C +TD + + + +L L +S C ++TDS + + + L+ L
Sbjct: 88 VQGMHNLQSLNLSGCYNLTDVGLAHAFVREMPSLTVLNLSLCKQITDSSLGRIAQYLRNL 147
Query: 207 TLLNLEGC--PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKI------GSLKVL 257
L+L GC L L L YLNL C+ +SD G + + G+L +
Sbjct: 148 EHLDLGGCCNITNTGLLLIAWGLTKLRYLNLRSCRHVSDSGIAHLAGLTKNDAGGTLFLQ 207
Query: 258 NLGFNE---ITDECLVH-LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-SDTQ 311
+L + +TD L++ +GL LESLNL C GI D G+V+L+ + +LK L L S
Sbjct: 208 HLVLQDCQKLTDLALLNAARGLVKLESLNLSFCGGITDSGMVHLSRMPSLKELNLRSCDN 267
Query: 312 VGSSGLRHLS-GLTNLESINLSFT-GISDGSLRKLA-GLSSLKSLNLDARQITDTGLAAL 368
+ G+ HL+ G L ++++SF + D SL +A G+ SL S++L + ITD G+A L
Sbjct: 268 ISDIGIAHLAEGGAYLRTLDVSFCDKVGDASLTHIAQGMYSLMSISLSSCPITDDGMARL 327
Query: 369 T-SLTGLTHLDLFG-ARITDSGAAYLR-NFKNLRSLEICG-GGLTDAGVKHIKDLSSLTL 424
+L L L++ +RITD G + N + L +++ G +T G++ I L L++
Sbjct: 328 VRTLRDLKTLNIGQCSRITDEGLGLIATNLRKLSCIDLYGCTKITTVGLEKIMQLPCLSV 387
Query: 425 LNL 427
LNL
Sbjct: 388 LNL 390
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 112/368 (30%), Positives = 172/368 (46%), Gaps = 54/368 (14%)
Query: 134 VKLDLERC-TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSK 191
KL L R + LVN +G+ +++ L++K S + G+ NL+SL +S C
Sbjct: 52 AKLHLRRANPSLFPSLVN-RGIRRVQILSLK------RSLSSVVQGMHNLQSLNLSGCYN 104
Query: 192 VTDSGIA--YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+TD G+A +++ + LT+LNL C S+LG + N L GC +
Sbjct: 105 LTDVGLAHAFVREMPSLTVLNLSLCKQITD-----SSLGRIAQYLRNLEHLDLGGCCNIT 159
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN------- 301
G L + GLT L LNL SC + D G+ +L GL
Sbjct: 160 NTGLLLIA---------------WGLTKLRYLNLRSCRHVSDSGIAHLAGLTKNDAGGTL 204
Query: 302 -LKCLELSDTQ--VGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA 357
L+ L L D Q + L GL LES+NLSF G I+D + L+ + SLK LNL +
Sbjct: 205 FLQHLVLQDCQKLTDLALLNAARGLVKLESLNLSFCGGITDSGMVHLSRMPSLKELNLRS 264
Query: 358 -RQITDTGLAALTSLTG-LTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV 413
I+D G+A L L LD+ F ++ D+ ++ + +L S+ + +TD G+
Sbjct: 265 CDNISDIGIAHLAEGGAYLRTLDVSFCDKVGDASLTHIAQGMYSLMSISLSSCPITDDGM 324
Query: 414 KH-IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN----SRITSAGLRHLKPL 468
++ L L LN+ Q +TD+ L LI+ T L L+ + ++IT+ GL + L
Sbjct: 325 ARLVRTLRDLKTLNIGQCSRITDEGLGLIA--TNLRKLSCIDLYGCTKITTVGLEKIMQL 382
Query: 469 KNLRSLTL 476
L L L
Sbjct: 383 PCLSVLNL 390
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 132/257 (51%), Gaps = 38/257 (14%)
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVN--------LTGLCNLKCLELSDTQVGSSGLRHLSG 322
++G+ NL+SLNL C + D GL + LT L C +++D+ +G R
Sbjct: 88 VQGMHNLQSLNLSGCYNLTDVGLAHAFVREMPSLTVLNLSLCKQITDSSLG----RIAQY 143
Query: 323 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLTG------ 373
L NLE ++L I++ L +A GL+ L+ LNL + R ++D+G+A L LT
Sbjct: 144 LRNLEHLDLGGCCNITNTGLLLIAWGLTKLRYLNLRSCRHVSDSGIAHLAGLTKNDAGGT 203
Query: 374 --LTHLDLFG-ARITDSGAAYLRNFKNLRSLE-----ICGGGLTDAGVKHIKDLSSLTLL 425
L HL L ++TD A L + L LE CGG +TD+G+ H+ + SL L
Sbjct: 204 LFLQHLVLQDCQKLTD--LALLNAARGLVKLESLNLSFCGG-ITDSGMVHLSRMPSLKEL 260
Query: 426 NLSQNCNLTDKTL-ELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 482
NL N++D + L G L +L+VS ++ A L H+ + + +L S++L SC +T
Sbjct: 261 NLRSCDNISDIGIAHLAEGGAYLRTLDVSFCDKVGDASLTHIAQGMYSLMSISLSSCPIT 320
Query: 483 ANDIKRLQS--RDLPNL 497
+ + RL RDL L
Sbjct: 321 DDGMARLVRTLRDLKTL 337
>gi|290987030|ref|XP_002676226.1| predicted protein [Naegleria gruberi]
gi|284089827|gb|EFC43482.1| predicted protein [Naegleria gruberi]
Length = 298
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 94/324 (29%), Positives = 149/324 (45%), Gaps = 32/324 (9%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL-EGC-PVTAACLDSLSALGSLFYLNLN 236
L NL L+IS ++ D G+ Y+ L+ L +LN+ + C T L+S+S + L L
Sbjct: 1 LENLTFLEIS--RIGDMGLKYISELKNLRILNIHDPCFTFTRYGLESISEMPKLTCL--- 55
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
K+ LK+ N G N I+ T L L+ +C + D+GL +L
Sbjct: 56 -------------KVRDLKICNEGVNWISQS--------TQLTDLDFTTCTL-DQGLESL 93
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
+ L L L ++ + + LT L S+N+ GI+D + L+ L L++
Sbjct: 94 CEMKRLTSLWLPSCPKYANKVELIGQLTQLTSLNICARGINDQDGVHIKELTQLTELDIS 153
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
QI + +++ LT L L++ I D GA + LR L++ +TDAGV I
Sbjct: 154 LNQIVFETIESISQLTNLIILNMSYCNIGDDGACLIGELSQLRELKVLKNLITDAGVISI 213
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
L L L++S N ++ E ISGL L LN+ + I G + L LRSL
Sbjct: 214 SQLKHLIKLDISNN-EISKTGAESISGLRNLTYLNIGYNLIGDEGCDFICDLSLLRSLHA 272
Query: 477 ESCKVTANDIKRLQSRDLPNLVSF 500
+ +++ IK + R+L L S
Sbjct: 273 DKTGISSEGIKSI--RNLRKLTSL 294
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 143/298 (47%), Gaps = 4/298 (1%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIK-WCNCITDSDMKPLSGLTNLKSLQISCS 190
NL L++ R + GL + L L LNI C T ++ +S + L L++
Sbjct: 3 NLTFLEISRIGDM--GLKYISELKNLRILNIHDPCFTFTRYGLESISEMPKLTCLKVRDL 60
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
K+ + G+ ++ +LT L+ C + L+SL + L L L C + E +
Sbjct: 61 KICNEGVNWISQSTQLTDLDFTTCTLDQG-LESLCEMKRLTSLWLPSCPKYANKVELIGQ 119
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+ L LN+ I D+ VH+K LT L L++ I E + +++ L NL L +S
Sbjct: 120 LTQLTSLNICARGINDQDGVHIKELTQLTELDISLNQIVFETIESISQLTNLIILNMSYC 179
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
+G G + L+ L + + I+D + ++ L L L++ +I+ TG +++
Sbjct: 180 NIGDDGACLIGELSQLRELKVLKNLITDAGVISISQLKHLIKLDISNNEISKTGAESISG 239
Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
L LT+L++ I D G ++ + LRSL G++ G+K I++L LT L+LS
Sbjct: 240 LRNLTYLNIGYNLIGDEGCDFICDLSLLRSLHADKTGISSEGIKSIRNLRKLTSLSLS 297
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 119/246 (48%), Gaps = 14/246 (5%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+ + G+ + + L LDF C D GLE L + LTSL + + A ++
Sbjct: 62 ICNEGVNWISQSTQLTDLDFTTCTL--DQGLESLCEMKRLTSL-WLPSCPKYANKVELIG 118
Query: 129 GLINLVKLDLERCTRIHGGL-----VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
L L L++ C R G+ V++K L +L L+I N I ++ +S LTNL
Sbjct: 119 QLTQLTSLNI--CAR---GINDQDGVHIKELTQLTELDISL-NQIVFETIESISQLTNLI 172
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L +S + D G + L +L L + +T A + S+S L L L+++ ++S
Sbjct: 173 ILNMSYCNIGDDGACLIGELSQLRELKVLKNLITDAGVISISQLKHLIKLDISNNEISKT 232
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
G E S + +L LN+G+N I DE + L+ L SL+ D GI EG+ ++ L L
Sbjct: 233 GAESISGLRNLTYLNIGYNLIGDEGCDFICDLSLLRSLHADKTGISSEGIKSIRNLRKLT 292
Query: 304 CLELSD 309
L LS+
Sbjct: 293 SLSLSN 298
>gi|290990083|ref|XP_002677666.1| predicted protein [Naegleria gruberi]
gi|284091275|gb|EFC44922.1| predicted protein [Naegleria gruberi]
Length = 262
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 122/245 (49%), Gaps = 9/245 (3%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA-LGSLFYLNLNR 237
L L SL I V D IA L L+ LT LN+ P+ L + L L L++
Sbjct: 5 LKQLNSLNIGYCSVED--IAPLGQLKDLTCLNINHIPIGLEGLKIIGENLQQLKSLDVTN 62
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT---NLESLNL-DSCGIG-DEG 292
C ++++ + ++ +L+ L + F +CL ++ L+ L+SLN+ +S IG +G
Sbjct: 63 CGITNEAAQYIRQLNNLESLTITF-VFYQKCLKGVEALSEMKQLKSLNIGNSSDIGGPQG 121
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
++ L NL L + T + G R +S L +L ++L+ ISD + ++GL +
Sbjct: 122 AKLISSLYNLTSLRMDGTMIEDEGARFISELKHLRFLDLTGNNISDEGAKSISGLKHVTD 181
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
L++ I D G A+ ++ L L L +I D GA Y+ LRSL +CG +T
Sbjct: 182 LDMARNDIGDEGAKAIATMNQLKRLILDNNKIGDDGAQYIGKLPQLRSLAVCGNRITPVS 241
Query: 413 VKHIK 417
+++++
Sbjct: 242 IQNLR 246
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 100/211 (47%), Gaps = 27/211 (12%)
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
++ L+SLD C I++ +++R L+NL SL+ + +
Sbjct: 50 ENLQQLKSLDVTNC-GITNEAAQYIRQLNNLESLT--------------------ITFVF 88
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD-MKPLSGLTNLKSLQISCSKVTDSG 196
++C + G+ L + +L+SLNI + I K +S L NL SL++ + + D G
Sbjct: 89 YQKCLK---GVEALSEMKQLKSLNIGNSSDIGGPQGAKLISSLYNLTSLRMDGTMIEDEG 145
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
++ L+ L L+L G ++ S+S L + L++ R + D+G + + + LK
Sbjct: 146 ARFISELKHLRFLDLTGNNISDEGAKSISGLKHVTDLDMARNDIGDEGAKAIATMNQLKR 205
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
L L N+I D+ ++ L L SL + CG
Sbjct: 206 LILDNNKIGDDGAQYIGKLPQLRSLAV--CG 234
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 102/229 (44%), Gaps = 27/229 (11%)
Query: 47 KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-QISDGGLEHLRGL 105
+ + +I L S+D++ +T+ +++ +NL+SL F Q G+E L +
Sbjct: 43 EGLKIIGENLQQLKSLDVTNCGITNEAAQYIRQLNNLESLTITFVFYQKCLKGVEALSEM 102
Query: 106 SNLTSLSFRRNNAIT-AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
L SL+ ++ I QG K + L NL L R+ G +
Sbjct: 103 KQLKSLNIGNSSDIGGPQGAKLISSLYNLTSL------RMDGTM---------------- 140
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
I D + +S L +L+ L ++ + ++D G + GL+ +T L++ + ++
Sbjct: 141 ---IEDEGARFISELKHLRFLDLTGNNISDEGAKSISGLKHVTDLDMARNDIGDEGAKAI 197
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ + L L L+ ++ DDG + K+ L+ L + N IT + +L+
Sbjct: 198 ATMNQLKRLILDNNKIGDDGAQYIGKLPQLRSLAVCGNRITPVSIQNLR 246
>gi|406831652|ref|ZP_11091246.1| hypothetical protein SpalD1_08439 [Schlesneria paludicola DSM
18645]
Length = 267
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 87/154 (56%)
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
P+ A L + L L L L Q++D EK + +L L LG+++++D + HLKG
Sbjct: 92 PLPAELLSEIGTLKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKG 151
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
L+ LE + L +GD+ L GL NLK + L+DT V +G++ L L +L+ + L+ T
Sbjct: 152 LSGLEWIFLIQTQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGT 211
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
+SD L+ L + +LK L++ I+D G AA+
Sbjct: 212 DVSDDGLKYLIEMKALKRLDIGNTLISDEGQAAI 245
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 245 CEKFSKIGSLKVLNLGF---NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
E S+IG+LK L + ++TD + L G+ NL L L + D G+ +L GL
Sbjct: 95 AELLSEIGTLKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSG 154
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
L+ + L TQVG L GL NL+SI L+ T ++D ++KL L L+ L L ++
Sbjct: 155 LEWIFLIQTQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTDVS 214
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
D GL L + L LD+ I+D G A +R
Sbjct: 215 DDGLKYLIEMKALKRLDIGNTLISDEGQAAIRK 247
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 78/151 (51%)
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
E L + L L++L L + D + L G+ NL L L +Q+ G+ HL GL+ L
Sbjct: 96 ELLSEIGTLKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSGL 155
Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
E I L T + D + L GL +LKS+ L+ +TD G+ L +L L +L L G ++D
Sbjct: 156 EWIFLIQTQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTDVSD 215
Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
G YL K L+ L+I ++D G I+
Sbjct: 216 DGLKYLIEMKALKRLDIGNTLISDEGQAAIR 246
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 4/163 (2%)
Query: 329 INLSFTG--ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+ FTG S+R G++S+ SL R + L+ + +L L L L G ++TD
Sbjct: 61 VEFRFTGPMWVPKSIRSHGGVTSI-SLTTTDRPLPAELLSEIGTLKELKTLWLLGPQVTD 119
Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 446
L KNL L + L+D G++H+K LS L + L Q + DKT +++ GL
Sbjct: 120 VAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSGLEWIFLIQ-TQVGDKTCDILQGLPN 178
Query: 447 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
L S+ ++++ +T AG++ LK L +L+ L L V+ + +K L
Sbjct: 179 LKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTDVSDDGLKYL 221
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 93/200 (46%), Gaps = 20/200 (10%)
Query: 112 SFRRNNAITAQGMKAFAGLINLV---KLDLERCTRIHGGLVN--------------LKGL 154
SF+ I A+ +++ G + + + + R HGG+ + L +
Sbjct: 43 SFQDERRIAAK-IESLGGRVEFRFTGPMWVPKSIRSHGGVTSISLTTTDRPLPAELLSEI 101
Query: 155 MKLESLNIKWC--NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L+ L W +TD ++ L G+ NL L + S+++D GI +LKGL L + L
Sbjct: 102 GTLKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSGLEWIFLI 161
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
V D L L +L + LN ++D G +K +G L+ L L +++D+ L +L
Sbjct: 162 QTQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTDVSDDGLKYL 221
Query: 273 KGLTNLESLNLDSCGIGDEG 292
+ L+ L++ + I DEG
Sbjct: 222 IEMKALKRLDIGNTLISDEG 241
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 79/152 (51%), Gaps = 6/152 (3%)
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
S I LK L+ L LL G VT ++ L + +L L L QLSD G E + L
Sbjct: 99 SEIGTLKELKTLWLL---GPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSGL 155
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
+ + L ++ D+ L+GL NL+S+ L+ + D G+ L L +L+ L L+ T V
Sbjct: 156 EWIFLIQTQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTDVSD 215
Query: 315 SGLRHLSGLTNLESINLSFTGISD---GSLRK 343
GL++L + L+ +++ T ISD ++RK
Sbjct: 216 DGLKYLIEMKALKRLDIGNTLISDEGQAAIRK 247
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 69/138 (50%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L LK+L + +VTD + L G++ LT L L ++ ++ L L L ++ L +
Sbjct: 104 LKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSGLEWIFLIQT 163
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
Q+ D C+ + +LK + L +TD + LK L +L+ L L + D+GL L
Sbjct: 164 QVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTDVSDDGLKYLIE 223
Query: 299 LCNLKCLELSDTQVGSSG 316
+ LK L++ +T + G
Sbjct: 224 MKALKRLDIGNTLISDEG 241
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 3/138 (2%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L G VTD + L NL L + Q+SD G+EHL+GLS L + F + +
Sbjct: 112 LLGPQVTDVAVEKLVGMKNLTGLYLGYS-QLSDRGIEHLKGLSGLEWI-FLIQTQVGDKT 169
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
GL NL + L G+ LK L L+ L + + ++D +K L + LK
Sbjct: 170 CDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTD-VSDDGLKYLIEMKALK 228
Query: 184 SLQISCSKVTDSGIAYLK 201
L I + ++D G A ++
Sbjct: 229 RLDIGNTLISDEGQAAIR 246
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
K L++L + G +TD V+ + + +LT L L + L+D+ +E + GL+GL + +
Sbjct: 103 TLKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYS-QLSDRGIEHLKGLSGLEWIFLI 161
Query: 454 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 491
+++ L+ L NL+S+ L VT +K+L++
Sbjct: 162 QTQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKA 199
>gi|261331843|emb|CBH14837.1| leucine-rich repeat protein (LRRP, pseudogene),putative [Trypanosoma
brucei gambiense DAL972]
Length = 1517
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 145/546 (26%), Positives = 222/546 (40%), Gaps = 97/546 (17%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L +N W + Q L LS + +TD + H C NL +LD +FC
Sbjct: 624 ALNELNLSDCFEINAGWEALEKLQ--QLHVAILSNTHITDGDISHFSKCKNLVTLDLSFC 681
Query: 92 IQISDGGLEHLRGLSNLTSLS-------------------FRRNNAITAQGMKAFAGLI- 131
++ D + LSN+T+L R + +G+ +I
Sbjct: 682 DKLLD-----VTALSNITTLEDLNLSNCSKIRKGLSVLGELPRLRVLNVKGVLLEDSVIG 736
Query: 132 ------NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+ KL LE C + G + L L+ LE LN+ +C+ +T S M L L L+ L
Sbjct: 737 SLGNGKSFAKLSLENC-KGFGDVKPLSNLVTLEELNLHYCDKVT-SGMGTLGSLPQLRVL 794
Query: 186 QI--------------------------SCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTA 218
+ C K+T S IA L L++L N++ C
Sbjct: 795 DLGRTQADNNSLENICTSSIPLVLLNLSHCKKITSISTIASLTALEEL---NIDNCCNVT 851
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTN 277
+ + L L L+ +++D+ S+ SL LNL F +ITD + L +T
Sbjct: 852 SGWNVFGTLHQLRVATLSNTRINDENIRYVSECKSLNTLNLAFCKDITD--VTALSKITM 909
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
LE LNLD C +G+ L L + L + + + + ++ L + +N S+ S
Sbjct: 910 LEELNLDCCHNIRKGIETLGKLPKARILSMKECYMETDMRNNVPSLGIVSHLN-SWKA-S 967
Query: 338 DGSLRKLAGL----------------SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
G+ K G+ SL LNL+ R + + AL+++ L L L
Sbjct: 968 QGTYPKHEGMLHGDGYAQQCSILGNSKSLVKLNLE-RSMGFISVKALSNIATLEELVLDH 1026
Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAG---VKHIKDLSSLTLLNLSQNCNLTDKTL 438
A+ + +F L L + TD K+I + SL LNLS +TD +
Sbjct: 1027 AQ----EVCCIPSFSCLPRLRVLNLKYTDINGDVTKNISESKSLRSLNLSHCKWVTD--I 1080
Query: 439 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNL 497
++S L+ L LN+S G L L LR L K+TA DI L S + L L
Sbjct: 1081 SVLSSLSTLEELNISECEQIRKGWESLGKLPLLRVAILSDTKITAKDIVCLSSCKTLVKL 1140
Query: 498 VSFRPE 503
FR E
Sbjct: 1141 KFFRCE 1146
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 134/514 (26%), Positives = 214/514 (41%), Gaps = 93/514 (18%)
Query: 37 CLGQYPGVNDKWMDVIA------SQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFN 89
CL + +N K+ D+ S+ SL S++LS VTD + L S L+ L+ +
Sbjct: 1038 CLPRLRVLNLKYTDINGDVTKNISESKSLRSLNLSHCKWVTDISV--LSSLSTLEELNIS 1095
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
C QI G E L L L ++ + ITA+ + + LVKL RC + V
Sbjct: 1096 ECEQIRKG-WESLGKLP-LLRVAILSDTKITAKDIVCLSSCKTLVKLKFFRCEELSDVTV 1153
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTDSGIAYLKGLQKLTL 208
K + LE L +K C+ +K L+ L L+ S K + + G L L
Sbjct: 1154 VYK-IQSLEELIVKNCS----DGLKGLNAPGTLPRLRFFASAKCERMLLVHSHGCVFLLL 1208
Query: 209 LNLEGCPVTAACLDS--------------------LSALGSLFYLNLNRCQLSDDGCEKF 248
N+ G ++ + + LS + SL L+L C + G
Sbjct: 1209 RNVRGSDISVESIGTSKSLVRLTIEVGEDLTDTTPLSDITSLEELSLRECGDNLGGVGTL 1268
Query: 249 SKIGSLKVLNLGFNEIT-----DECLV------------------HLKGLTNLESLNLDS 285
K+ LK L+LG ++I+ D CL H+ LT LE LNL
Sbjct: 1269 EKLPRLKSLDLGLSDISNSTLNDICLSRSITSLNLSNNYELTDISHISNLTALEELNLRG 1328
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSS-GLRHLSGLTNLESINLSFTGISDGSLRKL 344
C G L+ L L+ L L +V + ++S +L ++N+ + ++D S +
Sbjct: 1329 CYHITSGWEALSELPRLRVLNLESARVTTRYDGYYISRCKSLVTLNIQLSDMTDASY--I 1386
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
A + +L+ L++ G +AL +L L LDLF +RITD LRN + ++E
Sbjct: 1387 ANIKTLEELHIGECDELRWGFSALFTLPRLRILDLFMSRITDED---LRNIQPPHTIE-- 1441
Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT----LELISGLTGLVSLNVSNSRITSA 460
LNLS NL D T ++ I L L+S + R+
Sbjct: 1442 -------------------ELNLSYCENLNDITPLGRIKSIKNLHFLLSYDA--RRLREE 1480
Query: 461 GLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL 494
G R L L L + +++ V+++ ++ L+ R L
Sbjct: 1481 GFRSLLELPCLSWVGVKNAYVSSDILRELRKRRL 1514
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 130/540 (24%), Positives = 215/540 (39%), Gaps = 127/540 (23%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------GGLEHL---------RGL 105
+DLSG+ V D+ L L DC +L+ L+ ++CIQ++D E L RG+
Sbjct: 353 LDLSGAPVEDNFLKDLCDCGSLERLNLSYCIQLTDINPLSNAAATEELNLNGCRRITRGM 412
Query: 106 SNLTSLS-----FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+ L ++ ++ + + LVK+ L+ C G + L ++ LE L
Sbjct: 413 GVVWVLPKLRVLHMKDMHLSEPSLDSVGTGGPLVKVSLDNCAGF-GDMTLLSSIVTLEEL 471
Query: 161 NIK----------------------WCN--------------------------CITDS- 171
NI+ WC C + S
Sbjct: 472 NIQKCVDIISGVGCLGTLPYLVYLTWCGLPWYTTVPRVLNIKEAHISSLDFTGICASKSL 531
Query: 172 ---DMKPLSGLTNLKSLQ----------ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+M+ ++GL+N+++L + C+ + D+ I L +L +L+L G
Sbjct: 532 LQLNMESITGLSNVEALANILTLEKLSLLGCNGI-DAVIGCLGNPPQLKMLDLSGTNTDN 590
Query: 219 ACLDSL-----------------------SALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
L SL S+L +L LNL+ C + G E K+ L
Sbjct: 591 ESLRSLCLSQTMVSLNLSHCWKMTNMSHISSLEALNELNLSDCFEINAGWEALEKLQQLH 650
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE---LSDTQV 312
V L ITD + H NL +L+L C + L+++T L N+ LE LS+
Sbjct: 651 VAILSNTHITDGDISHFSKCKNLVTLDLSFC----DKLLDVTALSNITTLEDLNLSNCSK 706
Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSL 371
GL L L L +N+ + D + L S L+L+ + D + L++L
Sbjct: 707 IRKGLSVLGELPRLRVLNVKGVLLEDSVIGSLGNGKSFAKLSLENCKGFGD--VKPLSNL 764
Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS----LTLLNL 427
L L+L SG L + LR L++ G T A ++++ + L LLNL
Sbjct: 765 VTLEELNLHYCDKVTSGMGTLGSLPQLRVLDL---GRTQADNNSLENICTSSIPLVLLNL 821
Query: 428 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 487
S +T ++ I+ LT L LN+ N ++G L LR TL + ++ +I+
Sbjct: 822 SHCKKIT--SISTIASLTALEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRINDENIR 879
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 114/436 (26%), Positives = 189/436 (43%), Gaps = 50/436 (11%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
+ + G HL + L L + + ++ + L NL L+L + +
Sbjct: 242 VDNNGARHLFNIGTLEELVIA--DTMQLANIRGISRLTNLKCLELNSTDIDDSCVRRICA 299
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLE 212
+KL L++ CN I D+ P+S L L+ L + SC +T GI L L +L +L+L
Sbjct: 300 CVKLFKLSVSECNNIMDA--TPISQLAALEELNLNSCYHIT-KGIGTLGMLLRLRVLDLS 356
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRC-QLSD---------------DGCEKFSK------ 250
G PV L L GSL LNL+ C QL+D +GC + ++
Sbjct: 357 GAPVEDNFLKDLCDCGSLERLNLSYCIQLTDINPLSNAAATEELNLNGCRRITRGMGVVW 416
Query: 251 -IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGD----EGLVNLTGLCNLKC 304
+ L+VL++ +++ L + L ++LD+C G GD +V L L KC
Sbjct: 417 VLPKLRVLHMKDMHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTLLSSIVTLEELNIQKC 476
Query: 305 LELSDTQVGSSG-LRHLSGLTNL---------ESINLSFTGISDGSLRKLAGLSSLKSLN 354
+++ + VG G L +L LT +N+ IS + SL LN
Sbjct: 477 VDII-SGVGCLGTLPYLVYLTWCGLPWYTTVPRVLNIKEAHISSLDFTGICASKSLLQLN 535
Query: 355 LDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
+++ IT + + AL ++ L L L G D+ L N L+ L++ G + +
Sbjct: 536 MES--ITGLSNVEALANILTLEKLSLLGCNGIDAVIGCLGNPPQLKMLDLSGTNTDNESL 593
Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 473
+ + ++ LNLS +T+ + IS L L LN+S+ +AG L+ L+ L
Sbjct: 594 RSLCLSQTMVSLNLSHCWKMTN--MSHISSLEALNELNLSDCFEINAGWEALEKLQQLHV 651
Query: 474 LTLESCKVTANDIKRL 489
L + +T DI
Sbjct: 652 AILSNTHITDGDISHF 667
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 130/511 (25%), Positives = 199/511 (38%), Gaps = 112/511 (21%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD----------------------GGLEH 101
LS + + D + ++ +C +L +L+ FC I+D G+E
Sbjct: 868 LSNTRINDENIRYVSECKSLNTLNLAFCKDITDVTALSKITMLEELNLDCCHNIRKGIET 927
Query: 102 LRGLSNLTSLSFR--------RNNAIT------------AQG-MKAFAGLIN-------- 132
L L LS + RNN + +QG G+++
Sbjct: 928 LGKLPKARILSMKECYMETDMRNNVPSLGIVSHLNSWKASQGTYPKHEGMLHGDGYAQQC 987
Query: 133 --------LVKLDLERCTRIHGGLVNLKGLMKLESL------NIKWCNCITDSDMKPLSG 178
LVKL+LER G +++K L + +L + + CI P
Sbjct: 988 SILGNSKSLVKLNLERSM----GFISVKALSNIATLEELVLDHAQEVCCIPSFSCLPRLR 1043
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ NLK I+ VT I+ K L+ L NL C + LS+L +L LN++ C
Sbjct: 1044 VLNLKYTDIN-GDVT-KNISESKSLRSL---NLSHCKWVTD-ISVLSSLSTLEELNISEC 1097
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ G E K+ L+V L +IT + +V L L L C E L ++T
Sbjct: 1098 EQIRKGWESLGKLPLLRVAILSDTKITAKDIVCLSSCKTLVKLKFFRC----EELSDVTV 1153
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI---------------------- 336
+ ++ LE + S GL+ L+ L + +
Sbjct: 1154 VYKIQSLEELIVKNCSDGLKGLNAPGTLPRLRFFASAKCERMLLVHSHGCVFLLLRNVRG 1213
Query: 337 SDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
SD S+ + SL L ++ +TDT L+ +T L L L G L
Sbjct: 1214 SDISVESIGTSKSLVRLTIEVGEDLTDT--TPLSDITSLEELSLRECGDNLGGVGTLEKL 1271
Query: 396 KNLRSLEICGGGLTDAGVKHIKDL---SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
L+SL++ GL+D + D+ S+T LNLS N LTD + IS LT L LN+
Sbjct: 1272 PRLKSLDL---GLSDISNSTLNDICLSRSITSLNLSNNYELTD--ISHISNLTALEELNL 1326
Query: 453 SNSRITSAGLRHLKPLKNLRSLTLESCKVTA 483
++G L L LR L LES +VT
Sbjct: 1327 RGCYHITSGWEALSELPRLRVLNLESARVTT 1357
>gi|222630606|gb|EEE62738.1| hypothetical protein OsJ_17541 [Oryza sativa Japonica Group]
Length = 973
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 153/325 (47%), Gaps = 27/325 (8%)
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ A+ + L L L C ++ V L G+ L+ L++ C+ I+D+ +K +
Sbjct: 624 AVDAEWLAYLGAFRYLRVLKLADCKNVNSSAVWALSGMRTLKELDLSRCSKISDAGIKHI 683
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ + +L+ L +S + +TD+G+ + L L LL+L G T L SL L L +L++
Sbjct: 684 ASIESLEKLHVSQTGLTDNGVMAISSLINLRLLDLGGVRFTDKALRSLQVLTQLEHLDIW 743
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEIT-------------DECLVH------LKGLTN 277
+++++G SL LN+ + +T C +H + L +
Sbjct: 744 GSEITNEGASVLIAFTSLSFLNISWTRVTCLPILPTLRCLNMSNCTIHSICNGEFQVLIH 803
Query: 278 LESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
LE L + + G DE ++ +L L++S SS L L + NLE ++LS++
Sbjct: 804 LEKLIISAASFGNIDEVFSSILP-SSLTYLDMSSCS--SSNLYFLGNMRNLEHLDLSYSR 860
Query: 336 ISDGSLRKLAGLS-SLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLR 393
I ++ +A + +LK L+L ++T L L ++ LT L L +I DS Y+
Sbjct: 861 IISDAIEYIANIGMNLKFLSLSNSEVTSQALCVLAGTVPSLTTLSLAHTKIDDSALLYIS 920
Query: 394 NFKNLRSLEICGGGLTDAGVKHIKD 418
+LR L + + D +K+ K+
Sbjct: 921 MMPSLRILNLSRTCIKDERIKYSKE 945
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 89/297 (29%), Positives = 142/297 (47%), Gaps = 10/297 (3%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+V S + L L+ LD + C +ISD G++H+ + +L L + +T G+ A
Sbjct: 649 NVNSSAVWALSGMRTLKELDLSRCSKISDAGIKHIASIESLEKLHVSQ-TGLTDNGVMAI 707
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
+ LINL LDL L +L+ L +LE L+I W + IT+ L T+L L I
Sbjct: 708 SSLINLRLLDLGGVRFTDKALRSLQVLTQLEHLDI-WGSEITNEGASVLIAFTSLSFLNI 766
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
S ++VT L L L LN+ C + + C L L L ++ + E
Sbjct: 767 SWTRVT-----CLPILPTLRCLNMSNCTIHSICNGEFQVLIHLEKLIISAASFGNID-EV 820
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL-CNLKCLE 306
FS I + L + + L L + NLE L+L I + + + + NLK L
Sbjct: 821 FSSILPSSLTYLDMSSCSSSNLYFLGNMRNLEHLDLSYSRIISDAIEYIANIGMNLKFLS 880
Query: 307 LSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
LS+++V S L L+G + +L +++L+ T I D +L ++ + SL+ LNL I D
Sbjct: 881 LSNSEVTSQALCVLAGTVPSLTTLSLAHTKIDDSALLYISMMPSLRILNLSRTCIKD 937
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 96/176 (54%), Gaps = 8/176 (4%)
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGL 317
G + E L +L L L L C + + L+G+ LK L+LS +++ +G+
Sbjct: 621 GHIAVDAEWLAYLGAFRYLRVLKLADCKNVNSSAVWALSGMRTLKELDLSRCSKISDAGI 680
Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
+H++ + +LE +++S TG++D + ++ L +L+ L+L + TD L +L LT L HL
Sbjct: 681 KHIASIESLEKLHVSQTGLTDNGVMAISSLINLRLLDLGGVRFTDKALRSLQVLTQLEHL 740
Query: 378 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
D++G+ IT+ GA+ L F +L L I +T + L +L LN+S NC +
Sbjct: 741 DIWGSEITNEGASVLIAFTSLSFLNISWTRVTCLPI-----LPTLRCLNMS-NCTI 790
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 91/193 (47%), Gaps = 32/193 (16%)
Query: 291 EGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLS 348
E L L L+ L+L+D + V SS + LSG+ L+ ++LS + ISD ++ +A +
Sbjct: 628 EWLAYLGAFRYLRVLKLADCKNVNSSAVWALSGMRTLKELDLSRCSKISDAGIKHIASIE 687
Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
SL+ L++ +TD G+ A++SL L LDL G R TD L+ L L+I G +
Sbjct: 688 SLEKLHVSQTGLTDNGVMAISSLINLRLLDLGGVRFTDKALRSLQVLTQLEHLDIWGSEI 747
Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 468
T+ G + +SL+ LN+S +R+T L L
Sbjct: 748 TNEGASVLIAFTSLSFLNISW-------------------------TRVTC-----LPIL 777
Query: 469 KNLRSLTLESCKV 481
LR L + +C +
Sbjct: 778 PTLRCLNMSNCTI 790
>gi|28555894|emb|CAD45029.1| NBS-LRR disease resistance protein homologue [Hordeum vulgare]
Length = 1262
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 121/423 (28%), Positives = 196/423 (46%), Gaps = 6/423 (1%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++DLSG ++ NLQ L+ + C ++ + E L NL +L+
Sbjct: 756 LRTIDLSGCKKLETFPESFGSLENLQILNLSNCFEL-ESLPESFGSLKNLQTLNLVECKK 814
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ + ++ GL NL LD C ++ +L GL L++L + C+ + S +K L
Sbjct: 815 LESLP-ESLGGLKNLQTLDFSVCHKLESVPESLGGLNNLQTLKLSVCDNLV-SLLKSLGS 872
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L NL++L +S K +S L L+ L +LNL C + +SL L +L LN++ C
Sbjct: 873 LKNLQTLDLSGCKKLESLPESLGSLENLQILNLSNCFKLESLPESLGRLKNLQTLNISWC 932
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ + +L L+L + L L NLE+LNL C + +L G
Sbjct: 933 TELVFLPKNLGNLKNLPRLDLSGCMKLESLPDSLGSLENLETLNLSKCFKLESLPESLGG 992
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L NL+ L+L S L GL NL+++ LSF + L GL +L++L L
Sbjct: 993 LQNLQTLDLLVCHKLESLPESLGGLKNLQTLQLSFCHKLESLPESLGGLKNLQTLTLSVC 1052
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
++ +L SL L L L S L + KNL +L + ++ + +
Sbjct: 1053 DKLESLPESLGSLKNLHTLKLQVCYKLKSLPESLGSIKNLHTLNLSVCHNLESIPESVGS 1112
Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLE 477
L +L +LNLS NC + + + L L +L +S +R+ S ++L LKNL++L L
Sbjct: 1113 LENLQILNLS-NCFKLESIPKSLGSLKNLQTLILSWCTRLVSLP-KNLGNLKNLQTLDLS 1170
Query: 478 SCK 480
CK
Sbjct: 1171 GCK 1173
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 123/422 (29%), Positives = 183/422 (43%), Gaps = 28/422 (6%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
NLQ+LDF+ C ++ + E L GL+NL +L + + + +K+ L NL LDL C
Sbjct: 827 NLQTLDFSVCHKL-ESVPESLGGLNNLQTLKLSVCDNLVSL-LKSLGSLKNLQTLDLSGC 884
Query: 142 TRIH------GGLVNLKGL-----MKLESL-------------NIKWCNCITDSDMKPLS 177
++ G L NL+ L KLESL NI WC + K L
Sbjct: 885 KKLESLPESLGSLENLQILNLSNCFKLESLPESLGRLKNLQTLNISWCTELVFLP-KNLG 943
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L NL L +S +S L L+ L LNL C + +SL L +L L+L
Sbjct: 944 NLKNLPRLDLSGCMKLESLPDSLGSLENLETLNLSKCFKLESLPESLGGLQNLQTLDLLV 1003
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
C + E + +L+ L L F + L GL NL++L L C + +L
Sbjct: 1004 CHKLESLPESLGGLKNLQTLQLSFCHKLESLPESLGGLKNLQTLTLSVCDKLESLPESLG 1063
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
L NL L+L S L + NL ++NLS + + L +L+ LNL
Sbjct: 1064 SLKNLHTLKLQVCYKLKSLPESLGSIKNLHTLNLSVCHNLESIPESVGSLENLQILNLSN 1123
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
++ +L SL L L L S L N KNL++L++ G ++ +
Sbjct: 1124 CFKLESIPKSLGSLKNLQTLILSWCTRLVSLPKNLGNLKNLQTLDLSGCKKLESLPDSLG 1183
Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 477
L +L LNLS NC + E++ L L +LN+ + L LK+L++L L
Sbjct: 1184 SLENLQTLNLS-NCFKLESLPEILGSLKKLQTLNLFRCGKLESLPESLGSLKHLQTLVLI 1242
Query: 478 SC 479
C
Sbjct: 1243 DC 1244
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 106/399 (26%), Positives = 182/399 (45%), Gaps = 6/399 (1%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM-KAFAGLINLVKLDLER 140
NLQ+LD ++C ++ + E L + NL L+ +N + + ++ L ++ LDL
Sbjct: 659 NLQTLDLSWCEKL-ESLPESLGSVQNLQRLNL--SNCFELEALPESLGSLKDVQTLDLSS 715
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
C ++ +L L +++L++ C + S K L L NL+++ +S K ++
Sbjct: 716 CYKLESLPESLGSLKNVQTLDLSRCYKLV-SLPKNLGRLKNLRTIDLSGCKKLETFPESF 774
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
L+ L +LNL C + +S +L +L LNL C+ + E + +L+ L+
Sbjct: 775 GSLENLQILNLSNCFELESLPESFGSLKNLQTLNLVECKKLESLPESLGGLKNLQTLDFS 834
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
+ L GL NL++L L C L +L L NL+ L+LS + S L
Sbjct: 835 VCHKLESVPESLGGLNNLQTLKLSVCDNLVSLLKSLGSLKNLQTLDLSGCKKLESLPESL 894
Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
L NL+ +NLS + L L +L++LN+ L +L L LDL
Sbjct: 895 GSLENLQILNLSNCFKLESLPESLGRLKNLQTLNISWCTELVFLPKNLGNLKNLPRLDLS 954
Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
G +S L + +NL +L + ++ + + L +L L+L C+ + E
Sbjct: 955 GCMKLESLPDSLGSLENLETLNLSKCFKLESLPESLGGLQNLQTLDLLV-CHKLESLPES 1013
Query: 441 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 479
+ GL L +L +S + L LKNL++LTL C
Sbjct: 1014 LGGLKNLQTLQLSFCHKLESLPESLGGLKNLQTLTLSVC 1052
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 118/444 (26%), Positives = 197/444 (44%), Gaps = 34/444 (7%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL-EHLRGLSNLTSLSFRRNNAIT 120
+DLSG + D L+ L+ ++ D E + LS L L+ + I
Sbjct: 569 LDLSGCSIKDFA----SALGQLKQLEVLIAQKLQDRQFPESITRLSKLHYLNLSGSRGI- 623
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
++ + L++LV LDL CT + L L L++L++ WC + +S + L +
Sbjct: 624 SEIPSSVGKLVSLVHLDLSYCTNVKVIPKALGILRNLQTLDLSWCEKL-ESLPESLGSVQ 682
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ- 239
NL+ L +S ++ L L+ + L+L C + +SL +L ++ L+L+RC
Sbjct: 683 NLQRLNLSNCFELEALPESLGSLKDVQTLDLSSCYKLESLPESLGSLKNVQTLDLSRCYK 742
Query: 240 ----------------LSDDGCEK-------FSKIGSLKVLNLGFNEITDECLVHLKG-L 275
+ GC+K F + +L++LNL N E L G L
Sbjct: 743 LVSLPKNLGRLKNLRTIDLSGCKKLETFPESFGSLENLQILNLS-NCFELESLPESFGSL 801
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
NL++LNL C + +L GL NL+ L+ S S L GL NL+++ LS
Sbjct: 802 KNLQTLNLVECKKLESLPESLGGLKNLQTLDFSVCHKLESVPESLGGLNNLQTLKLSVCD 861
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
L+ L L +L++L+L + ++ +L SL L L+L +S L
Sbjct: 862 NLVSLLKSLGSLKNLQTLDLSGCKKLESLPESLGSLENLQILNLSNCFKLESLPESLGRL 921
Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 455
KNL++L I K++ +L +L L+LS C + + + L L +LN+S
Sbjct: 922 KNLQTLNISWCTELVFLPKNLGNLKNLPRLDLS-GCMKLESLPDSLGSLENLETLNLSKC 980
Query: 456 RITSAGLRHLKPLKNLRSLTLESC 479
+ L L+NL++L L C
Sbjct: 981 FKLESLPESLGGLQNLQTLDLLVC 1004
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 139/306 (45%), Gaps = 3/306 (0%)
Query: 177 SGLTNLKSLQI-SCSKVTDSGIAY-LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
S L LK L++ K+ D + L KL LNL G + S+ L SL +L+
Sbjct: 581 SALGQLKQLEVLIAQKLQDRQFPESITRLSKLHYLNLSGSRGISEIPSSVGKLVSLVHLD 640
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
L+ C + + +L+ L+L + E + L + NL+ LNL +C +
Sbjct: 641 LSYCTNVKVIPKALGILRNLQTLDLSWCEKLESLPESLGSVQNLQRLNLSNCFELEALPE 700
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
+L L +++ L+LS S L L N+++++LS + L L +L++++
Sbjct: 701 SLGSLKDVQTLDLSSCYKLESLPESLGSLKNVQTLDLSRCYKLVSLPKNLGRLKNLRTID 760
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
L + +T + SL L L+L +S + KNL++L + ++ +
Sbjct: 761 LSGCKKLETFPESFGSLENLQILNLSNCFELESLPESFGSLKNLQTLNLVECKKLESLPE 820
Query: 415 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
+ L +L L+ S C+ + E + GL L +L +S + L+ L LKNL++L
Sbjct: 821 SLGGLKNLQTLDFSV-CHKLESVPESLGGLNNLQTLKLSVCDNLVSLLKSLGSLKNLQTL 879
Query: 475 TLESCK 480
L CK
Sbjct: 880 DLSGCK 885
>gi|115504803|ref|XP_001219194.1| leucine-rich repeat protein (LRRP) [Trypanosoma brucei TREU927]
gi|83642676|emb|CAJ16709.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 735
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 126/496 (25%), Positives = 204/496 (41%), Gaps = 80/496 (16%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL----- 111
S L +DL G +T + L C+ L L + C GL + LSNL SL
Sbjct: 253 SHLFRLDLRGVHLTYRVVYSLSKCTGLTELYVSSC-----EGLSGVAWLSNLESLGDLDV 307
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
+R+N T A L L LDL + + L N+ L L++ +C +
Sbjct: 308 QWRKNLKHTGD---VLACLPLLRVLDLSGTSISNESLWNISESKLLRRLDLSFCGGV--K 362
Query: 172 DMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
D+ P+S + L+ L + C+ +T+ G+ L L L +LN+ P+ + L ++S++ SL
Sbjct: 363 DISPISDIVTLEELNLKGCTSITE-GVDKLGNLVNLHILNMSNTPLQSGFLYNISSIESL 421
Query: 231 FYLNLNRCQ-----------------------LSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L+L+ C +G ++ L++LN+ +TDE
Sbjct: 422 VELDLSSCWGVASLDSSVQTAVRMRKGSYPLARHIEGINALGRLPKLRLLNMSSTPVTDE 481
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT------QVGSSGLRHLS 321
CL L+ +L LNL C L +++ L ++K LE D + G+ LR L
Sbjct: 482 CLHGLQMCKSLVWLNLSLCA----NLTDVSPLSSVKTLEEVDLGCCGNLKWGAGSLRRLP 537
Query: 322 GLTNLESINLSFTGISD----------GSLRKLAGLSSLKSLNLDARQITDTG------- 364
L ++L T I+D G + ++ G + L+ I G
Sbjct: 538 ---QLRILDLKNTVITDHCLGDVTYGGGVVSRMLGRCGMADLSFSRWSIRRGGNLVRLDL 594
Query: 365 --------LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
+A LTS+T L L G R G L L L++ G +TD ++ +
Sbjct: 595 SSCWGLTDIAHLTSITTLEELRFTGCRNLKDGVDALGQLPVLHLLDLSGTSITDDSLQGL 654
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
SL LN+S NLTD + +S ++ L LN+ S+ G+ L L L + L
Sbjct: 655 STCRSLVTLNISSCANLTD--VSPLSRISSLEELNLQKSKHIRRGIDELVSLPRLYLVYL 712
Query: 477 ESCKVTANDIKRLQSR 492
+ + L+ R
Sbjct: 713 CRADFSRGVAEELEKR 728
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 166/355 (46%), Gaps = 40/355 (11%)
Query: 159 SLN-IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN---LEGC 214
SLN + + C D+ LSG + L L++ D +++ K L++L L L
Sbjct: 91 SLNKLHFIECSGSCDLGMLSGHSFLSELRVD----VDGEVSHYKALRELPSLRTLWLRNS 146
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
+T + + +L L L R L+ E +++ L+ L+L + D+CL +
Sbjct: 147 NMTLTDFFHVGEVDTLESLTL-RGALNFKCLEAVARLPRLRALDLSETLVNDKCLHAISA 205
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD----TQVGS-SGLRHLSGLTNLESI 329
L+ L L SC + + LT + +L+ L LS +VG+ L HL L +L +
Sbjct: 206 CKTLQQLGLSSCKRLRD-VSPLTQIASLEELNLSHCENLKEVGALYRLSHLFRL-DLRGV 263
Query: 330 NLSF---------TGISD------GSLRKLAGLSSLKSL-NLDA---RQITDTGLAALTS 370
+L++ TG+++ L +A LS+L+SL +LD + + TG L
Sbjct: 264 HLTYRVVYSLSKCTGLTELYVSSCEGLSGVAWLSNLESLGDLDVQWRKNLKHTG-DVLAC 322
Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQ 429
L L LDL G I++ + K LR L++ GG+ D + I D+ +L LNL +
Sbjct: 323 LPLLRVLDLSGTSISNESLWNISESKLLRRLDLSFCGGVKD--ISPISDIVTLEELNL-K 379
Query: 430 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 484
C + ++ + L L LN+SN+ + S L ++ +++L L L SC A+
Sbjct: 380 GCTSITEGVDKLGNLVNLHILNMSNTPLQSGFLYNISSIESLVELDLSSCWGVAS 434
>gi|219821342|gb|ACL37806.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 125/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
LTGL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLTGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 368
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 251 ----NISPLTGLTALT 262
>gi|47219755|emb|CAG03382.1| unnamed protein product [Tetraodon nigroviridis]
Length = 388
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 158/327 (48%), Gaps = 46/327 (14%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFA-----GLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ + QGM G NL L G ++ + L
Sbjct: 71 RGIKKVQILSLRRSLSYVIQGMPHIESLNLCGCFNLTDNGL--------GHAFVQDIPSL 122
Query: 158 ESLNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ L NL+ L++ CS +T++G+ + GL +L LNL C
Sbjct: 123 RVLNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLVAWGLHRLKSLNLRSC 182
Query: 215 -PVTAACLDSLSALG--------SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
V+ + LS + SL L L CQ L+D + SK + LKVLNL F
Sbjct: 183 RHVSDVGIGHLSGMTRSAAEGCLSLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCG 242
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
I+D ++HL +T+L SLNL SC I D G+++L G L L++S ++G L H
Sbjct: 243 GISDGGMIHLSHMTHLCSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKIGDQSLAH 302
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHL 377
++ G+ DG R + + LK+LN+ +ITD GL + LT LT +
Sbjct: 303 IA------------QGLDDGINRMVRQMHELKTLNIGQCGRITDKGLELIADHLTQLTGI 350
Query: 378 DLFG-ARITDSGAAYLRNFKNLRSLEI 403
DL+G +IT G + L+ L +
Sbjct: 351 DLYGCTKITKRGLERITQLPCLKVLNL 377
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 102/331 (30%), Positives = 163/331 (49%), Gaps = 54/331 (16%)
Query: 176 LSGLTNLKSLQI-SCSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ G+ +++SL + C +TD+G+ A+++ + L +LNL C S+LG +
Sbjct: 89 IQGMPHIESLNLCGCFNLTDNGLGHAFVQDIPSLRVLNLSLCKQITD-----SSLGRIAQ 143
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDE 291
N L GC + G L V GL L+SLNL SC + D
Sbjct: 144 YLKNLEVLELGGCSNITNTGLLLVA---------------WGLHRLKSLNLRSCRHVSDV 188
Query: 292 GLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGS 340
G+ +L+G+ +L+ L L D Q + L+H+S GL L+ +NLSF G ISDG
Sbjct: 189 GIGHLSGMTRSAAEGCLSLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCGGISDGG 248
Query: 341 LRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYLRNFK 396
+ L+ ++ L SLNL + I+DTG+ A+ SL L+ LD+ F +I D A++
Sbjct: 249 MIHLSHMTHLCSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKIGDQSLAHIAQ-- 305
Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN- 454
GL D + ++ + L LN+ Q +TDK LELI+ LT L +++
Sbjct: 306 ----------GLDDGINRMVRQMHELKTLNIGQCGRITDKGLELIADHLTQLTGIDLYGC 355
Query: 455 SRITSAGLRHLKPLKNLRSLTLESCKVTAND 485
++IT GL + L L+ L L ++T ++
Sbjct: 356 TKITKRGLERITQLPCLKVLNLGLWQMTESE 386
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 152/310 (49%), Gaps = 69/310 (22%)
Query: 68 DVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
++TD+GL H ++D +L+ L+ + C QI+D L + AQ +K
Sbjct: 105 NLTDNGLGHAFVQDIPSLRVLNLSLCKQITDSSLGRI------------------AQYLK 146
Query: 126 AFAGLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--- 180
NL L+L C+ I G L+ GL +L+SLN++ C ++D + LSG+T
Sbjct: 147 ------NLEVLELGGCSNITNTGLLLVAWGLHRLKSLNLRSCRHVSDVGIGHLSGMTRSA 200
Query: 181 -----NLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFY 232
+L+ L + C K+TD + ++ KGL KL +LNL C ++ + LS + L
Sbjct: 201 AEGCLSLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCGGISDGGMIHLSHMTHLCS 260
Query: 233 LNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL------------KGLT 276
LNL C +SD G + +GSL++ L++ F ++I D+ L H+ + +
Sbjct: 261 LNLRSCDNISDTGIMHLA-MGSLRLSGLDVSFCDKIGDQSLAHIAQGLDDGINRMVRQMH 319
Query: 277 NLESLNLDSCG-IGDEG-------LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
L++LN+ CG I D+G L LTG+ C T++ GL ++ L L+
Sbjct: 320 ELKTLNIGQCGRITDKGLELIADHLTQLTGIDLYGC-----TKITKRGLERITQLPCLKV 374
Query: 329 INLSFTGISD 338
+NL +++
Sbjct: 375 LNLGLWQMTE 384
>gi|18413537|emb|CAD21866.1| hypothetical leucine-rich repeat protein 1 (LRRP1) [Trypanosoma
brucei]
Length = 1393
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 115/407 (28%), Positives = 183/407 (44%), Gaps = 60/407 (14%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
++A A ++ L KL L CT I G+ L L +L+ L++ N +S ++ L +
Sbjct: 476 VEALANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNES-LRSLCLSQTVV 534
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
SL +S C K+T+ ++++ L+ L LNL C A +++ L L L+ ++D
Sbjct: 535 SLNLSHCWKMTN--VSHISSLEALNELNLSNCFGINAGWEAIEKLQQLHVAILSNTHITD 592
Query: 243 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV---NLTG 298
FS +L L+L F N++ D + L +T LE LNLDSC +GL L
Sbjct: 593 RDISHFSNCKNLITLDLSFCNKLLD--VTALSNITTLEELNLDSCSNIRKGLSVLGELPR 650
Query: 299 LC--NLKCLELSDTQV-----GSSGLR-------------HLSGLTNLESINLSF----- 333
LC N+K ++L D+ + G+S +R LS L LE +NL +
Sbjct: 651 LCVLNIKGVQLEDSVIVSLGNGNSFVRLSLENCKGFGDVAPLSNLVTLEELNLHYCDKVT 710
Query: 334 -------------------TGISDGSLRKLAGLSS-LKSLNL-DARQITDTGLAALTSLT 372
T + D SL + SS L SLNL + ++IT ++A+ SLT
Sbjct: 711 SGMGTLGRLLQLRVLDLGRTQVDDNSLENICTCSSPLVSLNLSNCKKIT--SISAIASLT 768
Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
L L++ SG LR + D ++H+ + SL LNL+ +
Sbjct: 769 ALEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRTNDENIRHVSECKSLNTLNLAFCKD 828
Query: 433 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 479
+TD T +S +T L LN+ G+ L L R L+++ C
Sbjct: 829 ITDVT--ALSKITMLEELNLDCCHNIRKGIETLGTLPKARILSMKEC 873
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 130/507 (25%), Positives = 211/507 (41%), Gaps = 77/507 (15%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L G+N W + Q L LS + +TD + H +C NL +LD +FC
Sbjct: 555 ALNELNLSNCFGINAGWEAIEKLQ--QLHVAILSNTHITDRDISHFSNCKNLITLDLSFC 612
Query: 92 IQISDGGLEHLRGLSNLTSLS-------------------FRRNNAITAQGMKAFAGLI- 131
++ D + LSN+T+L R + +G++ +I
Sbjct: 613 NKLLD-----VTALSNITTLEELNLDSCSNIRKGLSVLGELPRLCVLNIKGVQLEDSVIV 667
Query: 132 ------NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+ V+L LE C + G + L L+ LE LN+ +C+ +T S M L L L+ L
Sbjct: 668 SLGNGNSFVRLSLENC-KGFGDVAPLSNLVTLEELNLHYCDKVT-SGMGTLGRLLQLRVL 725
Query: 186 QISCSKVTD------------------------SGIAYLKGLQKLTLLNLEGCPVTAACL 221
+ ++V D + I+ + L L LN++ C +
Sbjct: 726 DLGRTQVDDNSLENICTCSSPLVSLNLSNCKKITSISAIASLTALEELNIDNCCNVTSGW 785
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLES 280
+ L L L+ + +D+ S+ SL LNL F +ITD + L +T LE
Sbjct: 786 NVFGTLHQLRVATLSNTRTNDENIRHVSECKSLNTLNLAFCKDITD--VTALSKITMLEE 843
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG- 339
LNLD C +G+ L L + L + + +G + S L N +S+ S G
Sbjct: 844 LNLDCCHNIRKGIETLGTLPKARILSMKECYMGDGYAQQCSILGNSKSLVKLNLERSRGR 903
Query: 340 -SLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF-- 395
S++ L+ +++L+ L LD AR++ + S + L L + + TD +N
Sbjct: 904 ISVKALSNVATLEELVLDHARKV-----CCIPSFSCLPRLRVLNLKYTDINGDVTKNISE 958
Query: 396 -KNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
K+LRSL + +TD V +N CN K E + L L +S
Sbjct: 959 SKSLRSLNLSHCKWVTDISVLSSLLTLEELNVNC---CNGIRKGWESLGKLPLLRVAILS 1015
Query: 454 NSRITSAGLRHLKPLKNLRSLTLESCK 480
+++IT+ + L K L L CK
Sbjct: 1016 DTKITAKDIACLSSCKKLVKLKFFRCK 1042
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 113/421 (26%), Positives = 188/421 (44%), Gaps = 36/421 (8%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I + HL + L L+ +T ++ + L NL L+L + +
Sbjct: 189 IDNNDARHLFNIGTLEELAITDTMQLT--NIRGISRLTNLKCLELNSTNIDDSCVRRICA 246
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+KL L++ CN ITD+ P+S L+ L+ L +S +T GI L L +L +L+L G
Sbjct: 247 CVKLSKLSVSECNNITDA--TPISQLSALEELNLSNCHIT-KGIGTLGMLLRLRILDLSG 303
Query: 214 CPVTAACLDSLSALGSLFYLNLN-RCQLSD---------------DGCEKFSK------- 250
PV CL L GSL LN++ R QL+D +GC + ++
Sbjct: 304 VPVEDNCLKDLCDCGSLERLNISYRIQLTDINPLSNATAIEELNLNGCRRITRGIGVVWA 363
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD 309
+ L+VL++ +++ L + L ++LD+C G GD L L+ + L+ L +
Sbjct: 364 LPKLRVLHMKDVHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTL--LSSIVTLEELNIQK 421
Query: 310 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAAL 368
SG+ L L L +N+ IS + SL LN+++ IT + + AL
Sbjct: 422 CADIISGVGCLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLNMES--ITGLSNVEAL 479
Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
++ L L L G D+G L N L+ L++ G + ++ + ++ LNLS
Sbjct: 480 ANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSLNLS 539
Query: 429 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
+T+ + IS L L LN+SN +AG ++ L+ L L + +T DI
Sbjct: 540 HCWKMTN--VSHISSLEALNELNLSNCFGINAGWEAIEKLQQLHVAILSNTHITDRDISH 597
Query: 489 L 489
Sbjct: 598 F 598
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 130/522 (24%), Positives = 213/522 (40%), Gaps = 102/522 (19%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------GGLEHL---------RGL 105
+DLSG V D+ L L DC +L+ L+ ++ IQ++D +E L RG+
Sbjct: 299 LDLSGVPVEDNCLKDLCDCGSLERLNISYRIQLTDINPLSNATAIEELNLNGCRRITRGI 358
Query: 106 SNLTSLSFRR----------------------------NNAITAQGMKAFAGLINLVKLD 137
+ +L R +N M + ++ L +L+
Sbjct: 359 GVVWALPKLRVLHMKDVHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTLLSSIVTLEELN 418
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNC-------------ITDSDMKPLSGLTNLKS 184
+++C I G+ L L L LNIK + + +M+ ++GL+N+++
Sbjct: 419 IQKCADIISGVGCLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLNMESITGLSNVEA 478
Query: 185 LQ--ISCSKVT-------DSGIAYLKGLQKLTLLNLEGCPVTAACLDSL----------- 224
L ++ K++ D+GI L L +L +L+L G L SL
Sbjct: 479 LANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSLNL 538
Query: 225 ------------SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
S+L +L LNL+ C + G E K+ L V L ITD + H
Sbjct: 539 SHCWKMTNVSHISSLEALNELNLSNCFGINAGWEAIEKLQQLHVAILSNTHITDRDISHF 598
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE---LSDTQVGSSGLRHLSGLTNLESI 329
NL +L+L C L+++T L N+ LE L GL L L L +
Sbjct: 599 SNCKNLITLDLSFCN----KLLDVTALSNITTLEELNLDSCSNIRKGLSVLGELPRLCVL 654
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
N+ + D + L +S L+L+ + D +A L++L L L+L SG
Sbjct: 655 NIKGVQLEDSVIVSLGNGNSFVRLSLENCKGFGD--VAPLSNLVTLEELNLHYCDKVTSG 712
Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS-LTLLNLSQNCNLTDKTLELISGLTGL 447
L LR L++ + D +++I SS L LNLS +T ++ I+ LT L
Sbjct: 713 MGTLGRLLQLRVLDLGRTQVDDNSLENICTCSSPLVSLNLSNCKKIT--SISAIASLTAL 770
Query: 448 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
LN+ N ++G L LR TL + + +I+ +
Sbjct: 771 EELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRTNDENIRHV 812
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 149/549 (27%), Positives = 222/549 (40%), Gaps = 136/549 (24%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------GGLEHL---------RGLSN 107
LS + D + H+ +C +L +L+ FC I+D LE L +G+
Sbjct: 799 LSNTRTNDENIRHVSECKSLNTLNLAFCKDITDVTALSKITMLEELNLDCCHNIRKGIET 858
Query: 108 LTSLSFRRNNAIT--------AQGMKAFAGLINLVKLDLERCT-RI-------------- 144
L +L R ++ AQ +LVKL+LER RI
Sbjct: 859 LGTLPKARILSMKECYMGDGYAQQCSILGNSKSLVKLNLERSRGRISVKALSNVATLEEL 918
Query: 145 ---HGGLV----NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSG 196
H V + L +L LN+K+ + I K +S +L+SL +S C VTD
Sbjct: 919 VLDHARKVCCIPSFSCLPRLRVLNLKYTD-INGDVTKNISESKSLRSLNLSHCKWVTDIS 977
Query: 197 IAY-------------------LKGLQKLTLLN---LEGCPVTAACLDSLSALGSLFYLN 234
+ + L KL LL L +TA + LS+ L L
Sbjct: 978 VLSSLLTLEELNVNCCNGIRKGWESLGKLPLLRVAILSDTKITAKDIACLSSCKKLVKLK 1037
Query: 235 LNRCQ-LSD-------------------DGCEKFSKIGSLKVL------NLGFNEITDEC 268
RC+ LSD DG + + +G+L L N+ ++I+ E
Sbjct: 1038 FFRCKKLSDVTVVYKIQSLEELIVTSCSDGLKGLNALGTLPRLRFHHLRNVRGSDISVES 1097
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE---LSDTQVGSSGLRHLSGLTN 325
+ K L L +G+E L ++T L N+ LE L D + G+ L L
Sbjct: 1098 IGTSKSLVRLH------IEVGEE-LTDITPLSNITSLEELSLRDYRKPPEGVGTLGKLPR 1150
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARI 384
L+S++L + ISD +L + S+ SLNLD+ ++TD ++ +++LT L L+L G
Sbjct: 1151 LKSLDLGLSRISDSTLYCICLSRSITSLNLDSSWKLTD--ISHISNLTALEELNLGGCYY 1208
Query: 385 TDSGAAYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD------- 435
SG L LR +LE D G +I L LNL + C++TD
Sbjct: 1209 ITSGWKALSELPRLRVLNLEFTRVTTRDGGY-YISRCKYLVTLNL-ELCDMTDASCLANI 1266
Query: 436 KTL---------ELISGLTGLVS------LNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
KTL EL G + L + LN+ S IT LR ++P + L L C
Sbjct: 1267 KTLEELHIGGCDELTQGFSALFTLPQLRILNLICSLITDEDLREIQPPHTIEELNLSYC- 1325
Query: 481 VTANDIKRL 489
V NDI L
Sbjct: 1326 VELNDITPL 1334
>gi|395538856|ref|XP_003771390.1| PREDICTED: F-box/LRR-repeat protein 14, partial [Sarcophilus
harrisii]
Length = 341
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 108/338 (31%), Positives = 175/338 (51%), Gaps = 48/338 (14%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+ G+ N++SL +S C +TD+G+ + + +GS LN
Sbjct: 27 IQGMANIESLNLSGCYNLTDNGLGH----------------------AVVQEIGSPRALN 64
Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
L+ C Q++D + ++ + L+VL LG + IT+ L+ + GL L+SLNL C +
Sbjct: 65 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRGCRHLS 124
Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
D G+ +L G+ L+ L L D Q + L+H+S GL L +NLSF G ISD
Sbjct: 125 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLAGLRLLNLSFCGGISD 184
Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
L L+ + SL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ +
Sbjct: 185 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 243
Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
L SL C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L ++
Sbjct: 244 GLDGLNSLSRCPCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 303
Query: 452 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
+ +RIT GL + L L+ L L ++T ++ R
Sbjct: 304 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTESEKVR 341
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 104/329 (31%), Positives = 165/329 (50%), Gaps = 36/329 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + +
Sbjct: 9 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAVVQEIGSPRA 62
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL GC
Sbjct: 63 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRGC 120
Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 262
+ A + +A G L L L CQ L+D + S+ + L++LNL F
Sbjct: 121 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLAGLRLLNLSFCG 180
Query: 263 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRH 319
I+D L+HL + +L SLNL SC I D G+++L G L L++S +VG L +
Sbjct: 181 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 240
Query: 320 LS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLT 375
++ GL L S++ ISD + R + + L++LN+ +ITD GL + L+ LT
Sbjct: 241 IAQGLDGLNSLSRCPCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 300
Query: 376 HLDLFG-ARITDSGAAYLRNFKNLRSLEI 403
+DL+G RIT G + L+ L +
Sbjct: 301 GIDLYGCTRITKRGLERITQLPCLKVLNL 329
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 165/315 (52%), Gaps = 32/315 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + + +L+ IT + A + L
Sbjct: 27 IQGMANIESLNLSGCYNLTDNGLGHAVVQEIGSPRALNLSLCKQITDSSLGRIAQYLKGL 86
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 87 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRGCRHLSDVGIGHLAGMTRSAAEGCLGLE 146
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 147 QLTLQDCQKLTDLSLKHISRGLAGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 206
Query: 240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL-- 293
+SD G + +GSL++ L++ F +++ D+ L ++ +GL L SL+ C I D+G+
Sbjct: 207 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLNSLSRCPCHISDDGINR 265
Query: 294 --VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+ GL L +C+ ++D + HLS LT ++ T I+ L ++ L
Sbjct: 266 MVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYG--CTRITKRGLERITQLP 322
Query: 349 SLKSLNLDARQITDT 363
LK LNL Q+T++
Sbjct: 323 CLKVLNLGLWQMTES 337
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 101/204 (49%), Gaps = 29/204 (14%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 156 LTDLSLKHISRGLAGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 215
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L SL+ C+ D + + + L++
Sbjct: 216 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLNSLSRCPCHISDDGINRMVRQMHGLRT 275
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I C ++TD G+ + + L +LT ++L GC +++
Sbjct: 276 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITK 312
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD 266
G E+ +++ LKVLNLG ++T+
Sbjct: 313 RGLERITQLPCLKVLNLGLWQMTE 336
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 120/246 (48%), Gaps = 34/246 (13%)
Query: 272 LKGLTNLESLNLDSC-GIGDEGL-------VNLTGLCNLK-CLELSDTQVGSSGLRHLSG 322
++G+ N+ESLNL C + D GL + NL C +++D+ +G ++L G
Sbjct: 27 IQGMANIESLNLSGCYNLTDNGLGHAVVQEIGSPRALNLSLCKQITDSSLGRIA-QYLKG 85
Query: 323 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 372
L LE N++ TG+ L GL LKSLNL R ++D G+ L +T
Sbjct: 86 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRGCRHLSDVGIGHLAGMTRSAAEG 141
Query: 373 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 426
GL L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LN
Sbjct: 142 CLGLEQLTLQDCQKLTDLSLKHISRGLAGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 200
Query: 427 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 483
L N++D + L G L L+VS ++ L ++ + L L SL+ C ++
Sbjct: 201 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLNSLSRCPCHISD 260
Query: 484 NDIKRL 489
+ I R+
Sbjct: 261 DGINRM 266
>gi|386333502|ref|YP_006029672.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
gi|334195951|gb|AEG69136.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
Length = 535
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 136/291 (46%), Gaps = 1/291 (0%)
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+L S + V G+ L + LT L+L + A L A L LN+NR ++
Sbjct: 218 TLNASRNGVGGEGVRALVDCKTLTSLDLSENGLGDAEAQRLGASERLTMLNVNRNRIDVP 277
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
G + +L L++G N I D + L T L +LN++ G+G G+ L L
Sbjct: 278 GARALAACKTLTSLDIGGNSIGDAGVEALLAHTQLTTLNVERAGVGAHGVRALADCKTLT 337
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
L + + +G G + L+ T+L +++ GI + LA + L +LNL + D
Sbjct: 338 SLRIDNNNIGDEGAKTLAASTSLTALHSESNGIGLAGAKALAANTMLTTLNLGHNSVGDA 397
Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
G A + T L L + ++D+GA L K L +L++ + D G + +LT
Sbjct: 398 GAQAWLANTKLVSLSVRRNGLSDAGAIRLAASKTLTTLDVGDNAIKDTGARAFAANRTLT 457
Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
LNLS N + + ++ T L SL++ N+R+ AG+R L + L SL
Sbjct: 458 TLNLSSN-EIGNAGARALAANTRLASLDLRNNRMLEAGVRALLVNRTLSSL 507
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 114/432 (26%), Positives = 180/432 (41%), Gaps = 61/432 (14%)
Query: 114 RRNNAITAQGMKAFAGLINL-VKLDLERCTRIH-GGLVNLKGLMKLESLN-IKWCNCITD 170
RR+ +T Q ++A + + V+ D+ + + GL K +L + TD
Sbjct: 72 RRSPPVTVQRLRAVSRSVKATVEADIRQLVVTNRAGLAGAKRAGNYPALEKLTLAGPFTD 131
Query: 171 SDMKPLSGLTNLKSLQISCSK----VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
+D+ L LK L +S + +T +GIA+L L L LNL G + L+
Sbjct: 132 ADLAGLP--PTLKELDLSRDRGRGFITAAGIAHLSRL-PLVRLNLSGNRIGTVEARLLAN 188
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
+L L+++RC + + + L LN N + E + L L SL+L
Sbjct: 189 HPTLTELDVSRCGIGPEEARALAASARLTTLNASRNGVGGEGVRALVDCKTLTSLDLSEN 248
Query: 287 GIGD------------------------EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
G+GD G L L L++ +G +G+ L
Sbjct: 249 GLGDAEAQRLGASERLTMLNVNRNRIDVPGARALAACKTLTSLDIGGNSIGDAGVEALLA 308
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG---LAALTSLTGL----- 374
T L ++N+ G+ +R LA +L SL +D I D G LAA TSLT L
Sbjct: 309 HTQLTTLNVERAGVGAHGVRALADCKTLTSLRIDNNNIGDEGAKTLAASTSLTALHSESN 368
Query: 375 ----------------THLDLFGARITDSGA-AYLRNFKNLRSLEICGGGLTDAGVKHIK 417
T L+L + D+GA A+L N K L SL + GL+DAG +
Sbjct: 369 GIGLAGAKALAANTMLTTLNLGHNSVGDAGAQAWLANTK-LVSLSVRRNGLSDAGAIRLA 427
Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 477
+LT L++ N + D + L +LN+S++ I +AG R L L SL L
Sbjct: 428 ASKTLTTLDVGDNA-IKDTGARAFAANRTLTTLNLSSNEIGNAGARALAANTRLASLDLR 486
Query: 478 SCKVTANDIKRL 489
+ ++ ++ L
Sbjct: 487 NNRMLEAGVRAL 498
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 124/266 (46%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N + D++ + L L L ++ +++ G L + LT L++ G + A +++L
Sbjct: 248 NGLGDAEAQRLGASERLTMLNVNRNRIDVPGARALAACKTLTSLDIGGNSIGDAGVEALL 307
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
A L LN+ R + G + +L L + N I DE L T+L +L+ +S
Sbjct: 308 AHTQLTTLNVERAGVGAHGVRALADCKTLTSLRIDNNNIGDEGAKTLAASTSLTALHSES 367
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
GIG G L L L L VG +G + T L S+++ G+SD +LA
Sbjct: 368 NGIGLAGAKALAANTMLTTLNLGHNSVGDAGAQAWLANTKLVSLSVRRNGLSDAGAIRLA 427
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
+L +L++ I DTG A + LT L+L I ++GA L L SL++
Sbjct: 428 ASKTLTTLDVGDNAIKDTGARAFAANRTLTTLNLSSNEIGNAGARALAANTRLASLDLRN 487
Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNC 431
+ +AGV+ + +L+ L +S NC
Sbjct: 488 NRMLEAGVRALLVNRTLSSLGVSFNC 513
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 118/276 (42%), Gaps = 3/276 (1%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L S+DLS + + D+ L L L+ N +I G L LTSL N
Sbjct: 239 TLTSLDLSENGLGDAEAQRLGASERLTMLNVNRN-RIDVPGARALAACKTLTSLDIG-GN 296
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+I G++A L L++ER G+ L L SL I N I D K L+
Sbjct: 297 SIGDAGVEALLAHTQLTTLNVERAGVGAHGVRALADCKTLTSLRID-NNNIGDEGAKTLA 355
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
T+L +L + + +G L LT LNL V A + A L L++ R
Sbjct: 356 ASTSLTALHSESNGIGLAGAKALAANTMLTTLNLGHNSVGDAGAQAWLANTKLVSLSVRR 415
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
LSD G + + +L L++G N I D L +LNL S IG+ G L
Sbjct: 416 NGLSDAGAIRLAASKTLTTLDVGDNAIKDTGARAFAANRTLTTLNLSSNEIGNAGARALA 475
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
L L+L + ++ +G+R L L S+ +SF
Sbjct: 476 ANTRLASLDLRNNRMLEAGVRALLVNRTLSSLGVSF 511
>gi|300704109|ref|YP_003745711.1| leucine-rich-repeat type III effector protein (gala5) [Ralstonia
solanacearum CFBP2957]
gi|299071772|emb|CBJ43096.1| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
solanacearum CFBP2957]
Length = 535
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 102/390 (26%), Positives = 174/390 (44%), Gaps = 32/390 (8%)
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR----NNAITAQGMK 125
TD+ L L L++LD + C + GL G+++L+ L R N I G++
Sbjct: 128 TDADLAGLPPT--LKTLDLSRC-RGRGQGLITAAGIAHLSRLPLVRLNLSGNRIGLAGVQ 184
Query: 126 AFAGLINLVKLDLERC----------------TRIHG--------GLVNLKGLMKLESLN 161
A L +LD+ RC T ++ G+ L G L SL+
Sbjct: 185 RLANHPTLTELDVSRCGIGPEEARALAASARLTTLNASHNGVGSEGVQALVGCKTLTSLD 244
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+ N + D++ + L L +L ++ +++ G L + LT L++ G + A +
Sbjct: 245 LS-DNGLGDAEAQRLGSSERLTTLNVNRNRIDVQGARALAACKTLTSLDIGGNSIGDAGV 303
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
++L A L LN+ R ++ G + + +L L + N I DE L T+L +L
Sbjct: 304 NALVANAQLTTLNVERAEIGAHGVQALADCKTLTSLRIDNNNIGDEGANTLAASTSLTTL 363
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
+ +S GIG G L L L L +G +G + T L +++ G+SD
Sbjct: 364 HSESNGIGPTGAQALAANTRLTTLNLGHNSIGDAGAQAWLANTTLVWLSVRRNGLSDACA 423
Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
+LA +L +L+ I D G AL + LT L++ I ++GA L L+SL
Sbjct: 424 IRLAASKTLTTLDASDNAIKDAGARALAANRTLTALNVSSNEIGNAGARALAANTMLKSL 483
Query: 402 EICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
++ + +AGV+ + +L+ L +S NC
Sbjct: 484 DLRNNRMLEAGVRALLANRTLSSLGVSFNC 513
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 110/382 (28%), Positives = 172/382 (45%), Gaps = 10/382 (2%)
Query: 127 FAGLINLVK-LDLERCTRIHGGLVNLKGLMKLESLNIKWCNC----ITDSDMKPLSGLTN 181
AGL +K LDL RC GL+ G+ L L + N I + ++ L+
Sbjct: 132 LAGLPPTLKTLDLSRCRGRGQGLITAAGIAHLSRLPLVRLNLSGNRIGLAGVQRLANHPT 191
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L L +S + L +LT LN V + + +L +L L+L+ L
Sbjct: 192 LTELDVSRCGIGPEEARALAASARLTTLNASHNGVGSEGVQALVGCKTLTSLDLSDNGLG 251
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
D ++ L LN+ N I + L L SL++ IGD G+ L
Sbjct: 252 DAEAQRLGSSERLTTLNVNRNRIDVQGARALAACKTLTSLDIGGNSIGDAGVNALVANAQ 311
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
L L + ++G+ G++ L+ L S+ + I D LA +SL +L+ ++ I
Sbjct: 312 LTTLNVERAEIGAHGVQALADCKTLTSLRIDNNNIGDEGANTLAASTSLTTLHSESNGIG 371
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGA-AYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
TG AL + T LT L+L I D+GA A+L N L L + GL+DA +
Sbjct: 372 PTGAQALAANTRLTTLNLGHNSIGDAGAQAWLAN-TTLVWLSVRRNGLSDACAIRLAASK 430
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
+LT L+ S N + D ++ L +LNVS++ I +AG R L L+SL L + +
Sbjct: 431 TLTTLDASDNA-IKDAGARALAANRTLTALNVSSNEIGNAGARALAANTMLKSLDLRNNR 489
Query: 481 VTANDIKR-LQSRDLPNL-VSF 500
+ ++ L +R L +L VSF
Sbjct: 490 MLEAGVRALLANRTLSSLGVSF 511
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 119/276 (43%), Gaps = 3/276 (1%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L S+DLS + + D+ L L +L+ N +I G L LTSL N
Sbjct: 239 TLTSLDLSDNGLGDAEAQRLGSSERLTTLNVNRN-RIDVQGARALAACKTLTSLDIG-GN 296
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+I G+ A L L++ER G+ L L SL I N I D L+
Sbjct: 297 SIGDAGVNALVANAQLTTLNVERAEIGAHGVQALADCKTLTSLRID-NNNIGDEGANTLA 355
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
T+L +L + + +G L +LT LNL + A + A +L +L++ R
Sbjct: 356 ASTSLTTLHSESNGIGPTGAQALAANTRLTTLNLGHNSIGDAGAQAWLANTTLVWLSVRR 415
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
LSD + + +L L+ N I D L L +LN+ S IG+ G L
Sbjct: 416 NGLSDACAIRLAASKTLTTLDASDNAIKDAGARALAANRTLTALNVSSNEIGNAGARALA 475
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
LK L+L + ++ +G+R L L S+ +SF
Sbjct: 476 ANTMLKSLDLRNNRMLEAGVRALLANRTLSSLGVSF 511
>gi|290992226|ref|XP_002678735.1| predicted protein [Naegleria gruberi]
gi|284092349|gb|EFC45991.1| predicted protein [Naegleria gruberi]
Length = 445
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 98/380 (25%), Positives = 171/380 (45%), Gaps = 45/380 (11%)
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
D + T N+ L +L+SL I + + K + L L L IS + + G
Sbjct: 71 DNTKITEFTKWAANIAQLEQLKSLEISSDHKVGYDGAKVIGQLKQLTKLDISFNTIGAEG 130
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN---------------------- 234
++ +Q+LT LN+ G +T+ + +S L +L YLN
Sbjct: 131 AKFIGEMQQLTYLNIYGNSLTSEGIRFISQLTNLTYLNVRFNEDFRFGGHDKGLEGAQYL 190
Query: 235 ----------LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
+ Q+ +DG + +I SL L + N + E + L L NL L+++
Sbjct: 191 RNLQKLTSLDIGYNQIGNDGAKFIGEIQSLTELTIRNNNLKAEGVRWLSKLKNLRLLSIN 250
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRK 343
+ I DEG+V++ L L L+L +T++ + G+ +S L + +++S I DG+ +
Sbjct: 251 NNHIKDEGVVHICKLKQLTHLDLWNTEITAEGIELVSKQLPKVTHLHISINVIRDGT-KF 309
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL----DLFGARITDSGAAYLRNFKNLR 399
L + L +L D ++ GL L L L L +LFGA G + K L
Sbjct: 310 LGEMKQLTTLEADEIELDAEGLKYLVGLKKLNFLSVNNNLFGAE----GCKVVSEMKQLE 365
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI--SGLTGLVSLNVSNSRI 457
L + + D GV+++ +L SLT L L N N+ + ++L+ L L +L++ ++I
Sbjct: 366 ELCMNDNNIGDNGVQYLCELKSLTSLCLWNN-NIGIEGVKLLCSGNLNNLTTLDIRGNQI 424
Query: 458 TSAGLRHLKPLKNLRSLTLE 477
T + + +K L L +E
Sbjct: 425 TKSDSHLFENMKQLTELLIE 444
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 148/345 (42%), Gaps = 36/345 (10%)
Query: 163 KWCNCITDSDMKP----------------LSGLTNLKSLQISC-SKVTDSGIAYLKGLQK 205
K+ NC+TD + ++ L LKSL+IS KV G + L++
Sbjct: 56 KFKNCVTDLKLTHTADNTKITEFTKWAANIAQLEQLKSLEISSDHKVGYDGAKVIGQLKQ 115
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
LT L++ + A + + L YLN+ L+ +G S++ +L LN+ FNE
Sbjct: 116 LTKLDISFNTIGAEGAKFIGEMQQLTYLNIYGNSLTSEGIRFISQLTNLTYLNVRFNE-- 173
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
G EG L L L L++ Q+G+ G + + + +
Sbjct: 174 --------------DFRFGGHDKGLEGAQYLRNLQKLTSLDIGYNQIGNDGAKFIGEIQS 219
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L + + + +R L+ L +L+ L+++ I D G+ + L LTHLDL+ IT
Sbjct: 220 LTELTIRNNNLKAEGVRWLSKLKNLRLLSINNNHIKDEGVVHICKLKQLTHLDLWNTEIT 279
Query: 386 DSGAAYL-RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 444
G + + + L I + D G K + ++ LT L + L + L+ + GL
Sbjct: 280 AEGIELVSKQLPKVTHLHISINVIRD-GTKFLGEMKQLTTLEADE-IELDAEGLKYLVGL 337
Query: 445 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
L L+V+N+ + G + + +K L L + + N ++ L
Sbjct: 338 KKLNFLSVNNNLFGAEGCKVVSEMKQLEELCMNDNNIGDNGVQYL 382
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 98/359 (27%), Positives = 152/359 (42%), Gaps = 65/359 (18%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQI----SDGGLE---HLRGLSNLT 109
L +++ G+ +T G+ + +NL L+ F D GLE +LR L LT
Sbjct: 138 QQLTYLNIYGNSLTSEGIRFISQLTNLTYLNVRFNEDFRFGGHDKGLEGAQYLRNLQKLT 197
Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCIT 169
SL N I G K + +L +L + L++ ++W
Sbjct: 198 SLDIGY-NQIGNDGAKFIGEIQSLTELTIRNNN--------------LKAEGVRW----- 237
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
LS L NL+ L I+ + + D G+ ++ L++LT L+L +TA
Sbjct: 238 ------LSKLKNLRLLSINNNHIKDEGVVHICKLKQLTHLDLWNTEITA----------- 280
Query: 230 LFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLGFNEITD--ECLVHLKGLTNLESLNLDSC 286
+G E SK + + L++ N I D + L +K LT LE+ D
Sbjct: 281 -------------EGIELVSKQLPKVTHLHISINVIRDGTKFLGEMKQLTTLEA---DEI 324
Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
+ EGL L GL L L +++ G+ G + +S + LE + ++ I D ++ L
Sbjct: 325 ELDAEGLKYLVGLKKLNFLSVNNNLFGAEGCKVVSEMKQLEELCMNDNNIGDNGVQYLCE 384
Query: 347 LSSLKSLNLDARQITDTGLAALTS--LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
L SL SL L I G+ L S L LT LD+ G +IT S + N K L L I
Sbjct: 385 LKSLTSLCLWNNNIGIEGVKLLCSGNLNNLTTLDIRGNQITKSDSHLFENMKQLTELLI 443
>gi|290991638|ref|XP_002678442.1| leucine rich repeat domain-containing protein [Naegleria gruberi]
gi|284092054|gb|EFC45698.1| leucine rich repeat domain-containing protein [Naegleria gruberi]
Length = 646
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 103/343 (30%), Positives = 165/343 (48%), Gaps = 38/343 (11%)
Query: 64 LSGSDVTD-SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLS-NLTSLSFRRNNAITA 121
L+ S VT +GL L+ S+ +S+ C +++G L+ L L +L SL+ NN I +
Sbjct: 256 LTSSAVTSLTGLTSLEMVSSHRSIGSKGCKYLANGKLKCLTSLDVSLESLNETNNNGIKS 315
Query: 122 QGMKAFAG--LINLVKLDL-------ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
G K A L +L++L+L + C + G GL+ L LN+ C D+
Sbjct: 316 NGCKYLANGNLNHLIQLNLSGNRIYSKGCQYLSNG-----GLLTLTHLNLSCCALDFDAC 370
Query: 173 MKPLSG-LTNLKSLQISCSKVTDSGIAYL--KGLQKLTLLNLEGCPVTAA--CLDSLSAL 227
+G L NL L +S + + SGI ++ + LT L+LE C V + + +
Sbjct: 371 QYLGNGNLKNLVQLNLSKNMLIGSGIQFIFNGNMPNLTWLSLESCEVRPSDCAFIGNADV 430
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL----------GFNEITDECLVHLKGLTN 277
SL YLN++ +SD+GC+ +K L + +L GF E+T G+
Sbjct: 431 SSLVYLNISNNPISDEGCKNLAKAQFLSLQDLYLRDCQIGSSGFAELT------ANGIGK 484
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L L +D+ IGDEG +N++ L L L +S+ +GS G R +S L L+ + +S +
Sbjct: 485 LTKLYVDNNNIGDEGCLNISSLPFLNLLSVSNNNLGSKGCRCISLLPQLQHLTISRNNVG 544
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
L LS L+ L+L I D G L + LT++ +F
Sbjct: 545 SSGCLYLNALSKLEYLDLVGNDIRDAGCEILCN-GSLTNVRVF 586
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 137/333 (41%), Gaps = 50/333 (15%)
Query: 189 CSKVTDSGIAYLKGLQKLTLLNL------EGCPVTA----ACLDSLSALGSLFYLN-LNR 237
C +T S + L GL L +++ +GC A CL SL SL LN N
Sbjct: 253 CEYLTSSAVTSLTGLTSLEMVSSHRSIGSKGCKYLANGKLKCLTSLDV--SLESLNETNN 310
Query: 238 CQLSDDGCEKFSK--IGSLKVLNLGFNEITDECLVHLK--GLTNLESLNLDSCGIGDEGL 293
+ +GC+ + + L LNL N I + +L GL L LNL C + +
Sbjct: 311 NGIKSNGCKYLANGNLNHLIQLNLSGNRIYSKGCQYLSNGGLLTLTHLNLSCCALDFDAC 370
Query: 294 VNLTG--LCNLKCLELSDTQVGSSGLRHL--SGLTNLESINLSFTGI--SDGSLRKLAGL 347
L L NL L LS + SG++ + + NL ++L + SD + A +
Sbjct: 371 QYLGNGNLKNLVQLNLSKNMLIGSGIQFIFNGNMPNLTWLSLESCEVRPSDCAFIGNADV 430
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
SSL LN+ I+D G L L+ DL+ LR +I G
Sbjct: 431 SSLVYLNISNNPISDEGCKNLAKAQFLSLQDLY-----------------LRDCQIGSSG 473
Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 467
+ I L+ L + N N+ D+ IS L L L+VSN+ + S G R +
Sbjct: 474 FAELTANGIGKLTKLYV----DNNNIGDEGCLNISSLPFLNLLSVSNNNLGSKGCRCISL 529
Query: 468 LKNLRSLTLESCKVTA------NDIKRLQSRDL 494
L L+ LT+ V + N + +L+ DL
Sbjct: 530 LPQLQHLTISRNNVGSSGCLYLNALSKLEYLDL 562
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 93/200 (46%), Gaps = 38/200 (19%)
Query: 314 SSGLRHLSGLTNLESINLSFT-------GISDGSLRKLAGLS-SLKSLN-LDARQITDTG 364
SS + L+GLT+LE ++ + +++G L+ L L SL+SLN + I G
Sbjct: 258 SSAVTSLTGLTSLEMVSSHRSIGSKGCKYLANGKLKCLTSLDVSLESLNETNNNGIKSNG 317
Query: 365 LAALTS--LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
L + L L L+L G RI G YL N GG LT L
Sbjct: 318 CKYLANGNLNHLIQLNLSGNRIYSKGCQYLSN----------GGLLT------------L 355
Query: 423 TLLNLSQNCNLTDKTLELISG--LTGLVSLNVSNSRITSAGLRHL--KPLKNLRSLTLES 478
T LNLS C L + + L LV LN+S + + +G++ + + NL L+LES
Sbjct: 356 THLNLSC-CALDFDACQYLGNGNLKNLVQLNLSKNMLIGSGIQFIFNGNMPNLTWLSLES 414
Query: 479 CKVTANDIKRLQSRDLPNLV 498
C+V +D + + D+ +LV
Sbjct: 415 CEVRPSDCAFIGNADVSSLV 434
>gi|28210241|ref|NP_781185.1| internalin A-like protein/ S-layer protein [Clostridium tetani E88]
gi|28202677|gb|AAO35122.1| internalin A-like protein/putative S-layer protein [Clostridium
tetani E88]
Length = 695
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 111/361 (30%), Positives = 174/361 (48%), Gaps = 47/361 (13%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
S L LK NL++L + + LE LRGL+NL +L N + LI
Sbjct: 372 SNLEPLKSMDNLENL---YLTKTKVVSLEPLRGLTNLKALVINETNV---SDLTPIKNLI 425
Query: 132 NLVKLDLERCTRIHGGLVNLKG---LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
NL ER T LV+L G L+ LESL+I N S++ + LTNLKSL I+
Sbjct: 426 NL-----ERLTLGDNKLVSLAGIENLVNLESLDINKNNV---SNLASIRDLTNLKSLNIN 477
Query: 189 CSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
+ VTD S + LK L++++ LN G L +L+AL L ++ L+
Sbjct: 478 ENNVTDLSVVTNLKNLERIS-LNKNGV----TSLGALAALPELEWVTAKENGLT------ 526
Query: 248 FSKIG-----SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
S +G LK L L N+I+D L L LT+LE+L+L + I D + +L+ L +
Sbjct: 527 -STVGLQNALKLKELFLDSNQISD--LSSLANLTSLETLSLRTNNISD--VSSLSDLTRM 581
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
K L L +GS + L+ + NL + + ISD S +A + +LK+L++ +++
Sbjct: 582 KNLYLHKNNIGS--IAPLASMENLTRLYVGKNNISDIS--AVANMKNLKTLSIGENMVSN 637
Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
G ++ L L LD+ ITD+ A NL+ + + + +A + D ++
Sbjct: 638 IG--PVSGLQSLETLDVADNFITDASPAI--GLPNLKDIMLLNTKVPEAQINAFPDSVTV 693
Query: 423 T 423
T
Sbjct: 694 T 694
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 106/357 (29%), Positives = 177/357 (49%), Gaps = 45/357 (12%)
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
AG+ NL+ DL + NL+ L +++L + ++PL GLTNLK+L
Sbjct: 352 LAGIENLI--DLRVLNAGKNNISNLEPLKSMDNLENLYLTKTKVVSLEPLRGLTNLKALV 409
Query: 187 ISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
I+ + V+D + I L L++LTL + V+ A +++L L S L++N+ +S+
Sbjct: 410 INETNVSDLTPIKNLINLERLTL--GDNKLVSLAGIENLVNLES---LDINKNNVSN--L 462
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI----------------- 288
+ +LK LN+ N +TD +V L NLE ++L+ G+
Sbjct: 463 ASIRDLTNLKSLNINENNVTDLSVVT--NLKNLERISLNKNGVTSLGALAALPELEWVTA 520
Query: 289 GDEGLVNLTGLCN---LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
+ GL + GL N LK L L Q+ S L L+ LT+LE+++L ISD S L+
Sbjct: 521 KENGLTSTVGLQNALKLKELFLDSNQI--SDLSSLANLTSLETLSLRTNNISDVS--SLS 576
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
L+ +K+L L I +A L S+ LT L + I+D A + N KNL++L I
Sbjct: 577 DLTRMKNLYLHKNNI--GSIAPLASMENLTRLYVGKNNISDISA--VANMKNLKTLSIGE 632
Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+++ G + L SL L+++ N +TD + + GL L + + N+++ A +
Sbjct: 633 NMVSNIG--PVSGLQSLETLDVADNF-ITDASPAI--GLPNLKDIMLLNTKVPEAQI 684
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 105/384 (27%), Positives = 182/384 (47%), Gaps = 64/384 (16%)
Query: 135 KLDLERCTRIH---GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
K DL+R T++ + NL G+ L L + S+++PL + NL++L ++ +K
Sbjct: 333 KADLQRVTQLDLWDKNVTNLAGIENLIDLRVLNAGKNNISNLEPLKSMDNLENLYLTKTK 392
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
V + L+GL NL+ + + L+ + +L +NL R L D+ + I
Sbjct: 393 VV--SLEPLRGLT-----NLKALVINETNVSDLTPIKNL--INLERLTLGDNKLVSLAGI 443
Query: 252 G---SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE-L 307
+L+ L++ N +++ L ++ LTNL+SLN++ + D L+ + NLK LE +
Sbjct: 444 ENLVNLESLDINKNNVSN--LASIRDLTNLKSLNINENNVTD-----LSVVTNLKNLERI 496
Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
S + G + L L+ L LE + G++ S L LK L LD+ QI+D L++
Sbjct: 497 SLNKNGVTSLGALAALPELEWVTAKENGLT--STVGLQNALKLKELFLDSNQISD--LSS 552
Query: 368 LTSLTGLTHLDLFGARITDSGA--------------------AYLRNFKNLRSLEICGGG 407
L +LT L L L I+D + A L + +NL L +
Sbjct: 553 LANLTSLETLSLRTNNISDVSSLSDLTRMKNLYLHKNNIGSIAPLASMENLTRLYVGKNN 612
Query: 408 LTD-AGVKHIKDLSSLTL-LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
++D + V ++K+L +L++ N+ N +SGL L +L+V+++ IT A
Sbjct: 613 ISDISAVANMKNLKTLSIGENMVSNIG-------PVSGLQSLETLDVADNFITDAS---- 661
Query: 466 KP---LKNLRSLTLESCKVTANDI 486
P L NL+ + L + KV I
Sbjct: 662 -PAIGLPNLKDIMLLNTKVPEAQI 684
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 117/432 (27%), Positives = 205/432 (47%), Gaps = 54/432 (12%)
Query: 57 SSLLSVDLSGSDVTD----SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
+L S+DLS +++ D SGL +LK+ + ++ +I+D ++ L GL NL L+
Sbjct: 103 ENLQSLDLSNNEIKDLGSLSGLKYLKELTLYKN-------KITD--VKALDGLKNLEKLN 153
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCT-------------RI----HGGLVNLKGLM 155
R N +G+K GL L +LDL + + RI G+ N + L
Sbjct: 154 LRDNKVKNIEGLK---GLEKLRELDLGKNSVFQPKPLKDLKNLRILNLESNGIGNAEDLE 210
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
+L+ + + T D++PL LTN+ L + + VT I LK + L LN+
Sbjct: 211 ELKQVEHLILSNNTVDDVEPLLTLTNVNKLYLDDNPVT--HIGKLKDMTNLKRLNINNDS 268
Query: 216 VTA-ACLDSLSALGSLFYLN----LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
+ A L L L + N L+ +L+D + ++ NL F I D+
Sbjct: 269 IEDLAELKKFKNLQWLKFKNQEMVLDNKKLNDLLVDPNKEV-KFADKNLEF-AIRDKIEK 326
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE-LSDTQVGSSGLRHLSGLTNLESI 329
+ + + + D+ + NL G+ NL L L+ + S L L + NLE++
Sbjct: 327 PKGAIKKADLQRVTQLDLWDKNVTNLAGIENLIDLRVLNAGKNNISNLEPLKSMDNLENL 386
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
L+ T + SL L GL++LK+L ++ ++D L + +L L L L ++
Sbjct: 387 YLTKTKVV--SLEPLRGLTNLKALVINETNVSD--LTPIKNLINLERLTLGDNKLV--SL 440
Query: 390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 449
A + N NL SL+I +++ I+DL++L LN+++N N+TD L +++ L L
Sbjct: 441 AGIENLVNLESLDINKNNVSNLA--SIRDLTNLKSLNINEN-NVTD--LSVVTNLKNLER 495
Query: 450 LNVSNSRITSAG 461
++++ + +TS G
Sbjct: 496 ISLNKNGVTSLG 507
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 117/415 (28%), Positives = 174/415 (41%), Gaps = 100/415 (24%)
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG-IAYLKGLQKLTLLNLEGCPVTA 218
LN+K N D+ L NL+SL +S +++ D G ++ LK L++LTL + V A
Sbjct: 86 LNLKSKNI---KDISGLEFFENLQSLDLSNNEIKDLGSLSGLKYLKELTLYKNKITDVKA 142
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
L L +L LNL ++ + E + L+ L+LG N + LK L NL
Sbjct: 143 -----LDGLKNLEKLNLRDNKVKN--IEGLKGLEKLRELDLGKNSVFQPK--PLKDLKNL 193
Query: 279 ESLNLDSCGIGD----------EGLV----------NLTGLCNLKCLELSDTQVGSSGLR 318
LNL+S GIG+ E L+ L L N+ L L D V G
Sbjct: 194 RILNLESNGIGNAEDLEELKQVEHLILSNNTVDDVEPLLTLTNVNKLYLDDNPVTHIG-- 251
Query: 319 HLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSLN----LDARQITD----------- 362
L +TNL+ +N++ I D L+K L LK N LD +++ D
Sbjct: 252 KLKDMTNLKRLNINNDSIEDLAELKKFKNLQWLKFKNQEMVLDNKKLNDLLVDPNKEVKF 311
Query: 363 ----------------TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
G L +T LDL+ +T+ A + N +LR L
Sbjct: 312 ADKNLEFAIRDKIEKPKGAIKKADLQRVTQLDLWDKNVTN--LAGIENLIDLRVL----- 364
Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDK---TLELISGLTGLVSLNVSNSRITSAGLR 463
+AG +I +L L ++ +N LT +LE + GLT L +L ++ + ++ L
Sbjct: 365 ---NAGKNNISNLEPLKSMDNLENLYLTKTKVVSLEPLRGLTNLKALVINETNVSD--LT 419
Query: 464 HLKPLKNLRSLT-----------------LESCKVTANDIKRLQS-RDLPNLVSF 500
+K L NL LT LES + N++ L S RDL NL S
Sbjct: 420 PIKNLINLERLTLGDNKLVSLAGIENLVNLESLDINKNNVSNLASIRDLTNLKSL 474
>gi|334145937|ref|YP_004508864.1| leucine-rich protein [Porphyromonas gingivalis TDC60]
gi|333803091|dbj|BAK24298.1| leucine-rich protein [Porphyromonas gingivalis TDC60]
Length = 1384
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 147/480 (30%), Positives = 231/480 (48%), Gaps = 74/480 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FR 114
+SL +DLSG+ + + L L ++L LD +SD + L GL +LTSL+ +
Sbjct: 131 ASLTELDLSGNQI--AKLEGLNALTSLTRLD------LSDNQIAKLEGLDSLTSLTELYL 182
Query: 115 RNNAITAQGMKAFAGLINLVKLDLE--RCTRIHG---------------GLVNLKGLMKL 157
N I ++ L +L +LDL + ++ G + L+GL L
Sbjct: 183 SGNQIAK--LEGLDHLTSLTRLDLRGNQIAKLEGLDHLTSLTGLNLSGNQIRKLEGLDSL 240
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
SL + + + ++ L+ LT+L L +S +++ + + L L LT LNL G ++
Sbjct: 241 TSLTELYLSGNQIAKLEGLNALTSLTELYLSGNQI--AKLEGLNALTSLTGLNLSGNQIS 298
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLT 276
L+SL++L SL LNL+ Q++ E + + SL L+L N+I E L HL LT
Sbjct: 299 K--LESLASLTSLTRLNLSDNQIA--KLEGLNALTSLTGLDLRGNQIAKLEGLDHLTSLT 354
Query: 277 ----------NLESLN-------LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
LE L+ LD G L +L L +L L+LSD Q+ + L
Sbjct: 355 RLDLRGNQIRKLEGLDSLTSLTQLDLSGNQISKLESLNALTSLTELDLSDNQIAT--LES 412
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN-LDARQITDTGLAALTSLTGLTHLD 378
L+ LT+L ++L SD + KL GL++L SL LD R L L LT LT LD
Sbjct: 413 LASLTSLTELDL-----SDNQIAKLEGLNALTSLTGLDLRGNQIAKLEGLDHLTSLTRLD 467
Query: 379 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 438
L G +I L + +L L++ G + + ++ + L+SLT L+LS N TL
Sbjct: 468 LRGNQIRKLEG--LDSLTSLTQLDLSGNQI--SKLESLNALTSLTELDLSDN---QIATL 520
Query: 439 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA----NDIKRLQSRDL 494
E ++ LT L L++S+++I A L L L +L L L ++ D+ +LQ D+
Sbjct: 521 EGLNALTSLTRLDLSDNQI--AKLESLASLTSLTRLDLSDNQIAKLEGLKDLTQLQELDV 578
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 144/438 (32%), Positives = 209/438 (47%), Gaps = 57/438 (13%)
Query: 57 SSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--F 113
+SL +DL G+ + GL HL + L +S + L GL +LTSL+ +
Sbjct: 197 TSLTRLDLRGNQIAKLEGLDHLTSLTGLN---------LSGNQIRKLEGLDSLTSLTELY 247
Query: 114 RRNNAITA-QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
N I +G+ A L L L + ++ G L L L LN+ N I S
Sbjct: 248 LSGNQIAKLEGLNALTSLTELY-LSGNQIAKLEG----LNALTSLTGLNLS-GNQI--SK 299
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL---NLEGCPVTAACLDSLSALGS 229
++ L+ LT+L L +S D+ IA L+GL LT L +L G + A L+ L L S
Sbjct: 300 LESLASLTSLTRLNLS-----DNQIAKLEGLNALTSLTGLDLRGNQI--AKLEGLDHLTS 352
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L L+L Q+ E + SL L+L N+I+ L L LT+L L+L I
Sbjct: 353 LTRLDLRGNQIR--KLEGLDSLTSLTQLDLSGNQISK--LESLNALTSLTELDLSDNQIA 408
Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
L +L L +L L+LSD Q+ L L+ LT+L ++L I+ L L L+S
Sbjct: 409 --TLESLASLTSLTELDLSDNQIAK--LEGLNALTSLTGLDLRGNQIA--KLEGLDHLTS 462
Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409
L L+L QI L L SLT LT LDL G +I S L +L L++ +
Sbjct: 463 LTRLDLRGNQIR--KLEGLDSLTSLTQLDLSGNQI--SKLESLNALTSLTELDLSDNQI- 517
Query: 410 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 469
A ++ + L+SLT L+LS N LE ++ LT L L++S+++I A L LK L
Sbjct: 518 -ATLEGLNALTSLTRLDLSDN---QIAKLESLASLTSLTRLDLSDNQI--AKLEGLKDLT 571
Query: 470 NLRSLTLESCKVTANDIK 487
L+ L V+ NDI+
Sbjct: 572 QLQEL-----DVSGNDIQ 584
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 114/344 (33%), Positives = 159/344 (46%), Gaps = 54/344 (15%)
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
LK L +S +++ L L LT L+L G + A L+ L+AL SL L+L+ Q+
Sbjct: 67 LKKLDLSYNQI--RKFEGLDHLASLTELDLSGNQI--AKLEGLNALTSLTRLDLSYNQIR 122
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLC 300
E + SL L+L N+I L L LT+L L+L I EGL +LT L
Sbjct: 123 --KFEGLDHLASLTELDLSGNQIAK--LEGLNALTSLTRLDLSDNQIAKLEGLDSLTSLT 178
Query: 301 NLKCLELSDTQVGS-SGLRHLSGLT----------NLESIN--LSFTGI--SDGSLRKLA 345
L LS Q+ GL HL+ LT LE ++ S TG+ S +RKL
Sbjct: 179 ELY---LSGNQIAKLEGLDHLTSLTRLDLRGNQIAKLEGLDHLTSLTGLNLSGNQIRKLE 235
Query: 346 GLSSLKSLN---LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
GL SL SL L QI L L +LT LT L L G +I L +L L
Sbjct: 236 GLDSLTSLTELYLSGNQIA--KLEGLNALTSLTELYLSGNQIAKLEG--LNALTSLTGLN 291
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-AG 461
+ G + + ++ + L+SLT LNLS N LE ++ LT L L++ ++I G
Sbjct: 292 LSGNQI--SKLESLASLTSLTRLNLSDN---QIAKLEGLNALTSLTGLDLRGNQIAKLEG 346
Query: 462 LRHL-------------KPLKNLRSLT-LESCKVTANDIKRLQS 491
L HL + L+ L SLT L ++ N I +L+S
Sbjct: 347 LDHLTSLTRLDLRGNQIRKLEGLDSLTSLTQLDLSGNQISKLES 390
>gi|290989752|ref|XP_002677501.1| predicted protein [Naegleria gruberi]
gi|284091109|gb|EFC44757.1| predicted protein [Naegleria gruberi]
Length = 340
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 144/313 (46%), Gaps = 17/313 (5%)
Query: 124 MKAFAGLINLVKLDLERC----TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
+K L L LD+ +R G+ L LM L L I N I D+ + +SG+
Sbjct: 20 LKKIGELSQLKTLDIANAAGDRSRFSKGIKYLGNLMNLSELYIN-SNEIGDNGAEDISGM 78
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS-ALGSLFYLNLNRC 238
L L +S + +T G ++ L KL L +E + A + ++ L L L++
Sbjct: 79 KQLTKLDVSSNDITTKGAKHISKLNKLVSLKMEENMIDAQGIKYITDQLNQLTELDIGSN 138
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
L G + S++ L L++ N + +E ++ L NL L ++S I EG ++
Sbjct: 139 DLGVLGAKAVSELSQLTSLSIENNNLLNEGAAYISRLLNLTDLCINSNQIDSEGAKDIIK 198
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L L L +S + G + +S L NL +++S ++D + ++ L LK+L +D
Sbjct: 199 LKQLTTLFISGNSLLDEGAKLISELNNLTVLDISDNELTDEGVEPISKLKQLKTLEIDEN 258
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
QI+D G+ ++ L LT L++ I+ G + I G + D G + I D
Sbjct: 259 QISDEGIESICGLNQLTELNIDYNLISAEGLS-----------SISGNEIGDEGAEIIGD 307
Query: 419 LSSLTLLNLSQNC 431
L++L L + QN
Sbjct: 308 LTNLKELTVDQNS 320
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 136/284 (47%), Gaps = 13/284 (4%)
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
++G+K L+NL +L + G ++ G+ +L L++ N IT K +S L
Sbjct: 45 SKGIKYLGNLMNLSELYINSNEIGDNGAEDISGMKQLTKLDVS-SNDITTKGAKHISKLN 103
Query: 181 NLKSLQISCSKVTDSGIAYLKG-LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
L SL++ + + GI Y+ L +LT L++ + ++S L L L++
Sbjct: 104 KLVSLKMEENMIDAQGIKYITDQLNQLTELDIGSNDLGVLGAKAVSELSQLTSLSIENNN 163
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
L ++G S++ +L L + N+I E + L L +L + + DEG ++ L
Sbjct: 164 LLNEGAAYISRLLNLTDLCINSNQIDSEGAKDIIKLKQLTTLFISGNSLLDEGAKLISEL 223
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
NL L++SD ++ G+ +S L L+++ + ISD + + GL+ L LN+D
Sbjct: 224 NNLTVLDISDNELTDEGVEPISKLKQLKTLEIDENQISDEGIESICGLNQLTELNIDYNL 283
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
I+ GL++++ G I D GA + + NL+ L +
Sbjct: 284 ISAEGLSSIS-----------GNEIGDEGAEIIGDLTNLKELTV 316
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 84/323 (26%), Positives = 149/323 (46%), Gaps = 17/323 (5%)
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS----GIAYLKGLQKLTLLNLEGCP 215
L++K + DS +K + L+ LK+L I+ + S GI YL L L+ L +
Sbjct: 7 LDMKGVSIFKDSFLKKIGELSQLKTLDIANAAGDRSRFSKGIKYLGNLMNLSELYINSNE 66
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG- 274
+ + +S + L L+++ ++ G + SK+ L L + N I + + ++
Sbjct: 67 IGDNGAEDISGMKQLTKLDVSSNDITTKGAKHISKLNKLVSLKMEENMIDAQGIKYITDQ 126
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
L L L++ S +G G ++ L L L + + + + G ++S L NL + ++
Sbjct: 127 LNQLTELDIGSNDLGVLGAKAVSELSQLTSLSIENNNLLNEGAAYISRLLNLTDLCINSN 186
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
I + + L L +L + + D G ++ L LT LD+ +TD G +
Sbjct: 187 QIDSEGAKDIIKLKQLTTLFISGNSLLDEGAKLISELNNLTVLDISDNELTDEGVEPISK 246
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
K L++LEI ++D G++ I L+ LT LN+ N LIS GL S +S
Sbjct: 247 LKQLKTLEIDENQISDEGIESICGLNQLTELNIDYN---------LISA-EGLSS--ISG 294
Query: 455 SRITSAGLRHLKPLKNLRSLTLE 477
+ I G + L NL+ LT++
Sbjct: 295 NEIGDEGAEIIGDLTNLKELTVD 317
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 135/294 (45%), Gaps = 33/294 (11%)
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132
G+ +L + NL L N +I D G E + G+ LT L N+ IT +G K + L
Sbjct: 47 GIKYLGNLMNLSELYINSN-EIGDNGAEDISGMKQLTKLDVSSND-ITTKGAKHISKLNK 104
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM----------KPLSGLTNL 182
LV L +E +++ +G+ + N +T+ D+ K +S L+ L
Sbjct: 105 LVSLKMEE------NMIDAQGIKYI----TDQLNQLTELDIGSNDLGVLGAKAVSELSQL 154
Query: 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
SL I + + + G AY+ L LT L + + + + L L L ++ L D
Sbjct: 155 TSLSIENNNLLNEGAAYISRLLNLTDLCINSNQIDSEGAKDIIKLKQLTTLFISGNSLLD 214
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
+G + S++ +L VL++ NE+TDE + + L L++L +D I DEG+ ++ GL L
Sbjct: 215 EGAKLISELNNLTVLDISDNELTDEGVEPISKLKQLKTLEIDENQISDEGIESICGLNQL 274
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
L + + + GL +SG I D + L++LK L +D
Sbjct: 275 TELNIDYNLISAEGLSSISG-----------NEIGDEGAEIIGDLTNLKELTVD 317
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 124/272 (45%), Gaps = 39/272 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L +D+S +D+T G +H+ L+ L SL N
Sbjct: 81 LTKLDVSSNDITTK-------------------------GAKHISKLNKLVSLKMEE-NM 114
Query: 119 ITAQGMKAFAGLIN-LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I AQG+K +N L +LD+ G + L +L SL+I+ N + + +S
Sbjct: 115 IDAQGIKYITDQLNQLTELDIGSNDLGVLGAKAVSELSQLTSLSIENNNLLNEG-AAYIS 173
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L NL L I+ +++ G + L++LT L + G + +S L +L L+++
Sbjct: 174 RLLNLTDLCINSNQIDSEGAKDIIKLKQLTTLFISGNSLLDEGAKLISELNNLTVLDISD 233
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+L+D+G E SK+ LK L + N+I+DE + + GL L LN+D I EGL +++
Sbjct: 234 NELTDEGVEPISKLKQLKTLEIDENQISDEGIESICGLNQLTELNIDYNLISAEGLSSIS 293
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
G ++G G + LTNL+ +
Sbjct: 294 G-----------NEIGDEGAEIIGDLTNLKEL 314
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 6/124 (4%)
Query: 374 LTHLDLFGARI-TDSGAAYLRNFKNLRSLEICGGG----LTDAGVKHIKDLSSLTLLNLS 428
+T LD+ G I DS + L++L+I G+K++ +L +L+ L ++
Sbjct: 4 VTWLDMKGVSIFKDSFLKKIGELSQLKTLDIANAAGDRSRFSKGIKYLGNLMNLSELYIN 63
Query: 429 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
N + D E ISG+ L L+VS++ IT+ G +H+ L L SL +E + A IK
Sbjct: 64 SN-EIGDNGAEDISGMKQLTKLDVSSNDITTKGAKHISKLNKLVSLKMEENMIDAQGIKY 122
Query: 489 LQSR 492
+ +
Sbjct: 123 ITDQ 126
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 7/101 (6%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ ++L +D+S +++TD G+ + L++L+ + QISD G+E + GL+ LT L+
Sbjct: 221 SELNNLTVLDISDNELTDEGVEPISKLKQLKTLEIDEN-QISDEGIESICGLNQLTELNI 279
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154
N I+A+G+ + +G N + + I G L NLK L
Sbjct: 280 DY-NLISAEGLSSISG--NEIG---DEGAEIIGDLTNLKEL 314
>gi|87309591|ref|ZP_01091725.1| probable G protein-coupled receptor [Blastopirellula marina DSM
3645]
gi|87287355|gb|EAQ79255.1| probable G protein-coupled receptor [Blastopirellula marina DSM
3645]
Length = 328
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 105/223 (47%), Gaps = 5/223 (2%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+TD+ L L +L+ L ++ S VTD + + L +L L LE VT+A + +L++
Sbjct: 80 MTDNAASHLVMLQSLQRLNLNQSGVTDKSLEIMGALPELRSLYLERTAVTSAGVAALASC 139
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
L L L C + DD E ++ +L +L+L ITD + HL+ L +L++L L
Sbjct: 140 EKLEELMLTECAIQDDALETIGQLPALTLLSLSETPITDAGMFHLQSLPHLKTLYLRDTA 199
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
+ EG L +L+ ++LSD + S + L NLE + L T ++D L +
Sbjct: 200 VTGEGFAMLKSSTDLRLIDLSDNSINRSTIETLRSFPNLERLYLGRTSLTDELLPEFIDT 259
Query: 348 -----SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L+ L + ITD L L L L L + R T
Sbjct: 260 LIRFNPHLRGLAIMEVPITDNSLTPLKRLAELPDLAVVDFRET 302
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 112/241 (46%), Gaps = 6/241 (2%)
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
++ G++ L +TD HL L +L+ LNL+ G+ D+ L + L L+ L
Sbjct: 63 EYDDQGAVVELRANSARMTDNAASHLVMLQSLQRLNLNQSGVTDKSLEIMGALPELRSLY 122
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
L T V S+G+ L+ LE + L+ I D +L + L +L L+L ITD G+
Sbjct: 123 LERTAVTSAGVAALASCEKLEELMLTECAIQDDALETIGQLPALTLLSLSETPITDAGMF 182
Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
L SL L L L +T G A L++ +LR +++ + + ++ ++ +L L
Sbjct: 183 HLQSLPHLKTLYLRDTAVTGEGFAMLKSSTDLRLIDLSDNSINRSTIETLRSFPNLERLY 242
Query: 427 LSQNCNLTDKTL-ELISGL----TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
L + +LTD+ L E I L L L + IT L LK L L L + +
Sbjct: 243 LGR-TSLTDELLPEFIDTLIRFNPHLRGLAIMEVPITDNSLTPLKRLAELPDLAVVDFRE 301
Query: 482 T 482
T
Sbjct: 302 T 302
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 105/239 (43%), Gaps = 12/239 (5%)
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
G++ L N +++D+ + SL+ LNL + +TD+ L + L L SL L+
Sbjct: 68 GAVVELRANSARMTDNAASHLVMLQSLQRLNLNQSGVTDKSLEIMGALPELRSLYLERTA 127
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
+ G+ L L+ L L++ + L + L L ++LS T I+D + L L
Sbjct: 128 VTSAGVAALASCEKLEELMLTECAIQDDALETIGQLPALTLLSLSETPITDAGMFHLQSL 187
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
LK+L L +T G A L S T L +DL I S LR+F NL L +
Sbjct: 188 PHLKTLYLRDTAVTGEGFAMLKSSTDLRLIDLSDNSINRSTIETLRSFPNLERLYLGRTS 247
Query: 408 LTDAGVKHIKDLSSLTLLNLSQN--------CNLTDKTLELISGLTGLVSLNVSNSRIT 458
LTD + D TL+ + + +TD +L + L L L V + R T
Sbjct: 248 LTDELLPEFID----TLIRFNPHLRGLAIMEVPITDNSLTPLKRLAELPDLAVVDFRET 302
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 84/178 (47%)
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L+ + +++TD+ ++L LQ L LNL VT L+ + AL L L L R ++ G
Sbjct: 73 LRANSARMTDNAASHLVMLQSLQRLNLNQSGVTDKSLEIMGALPELRSLYLERTAVTSAG 132
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
+ L+ L L I D+ L + L L L+L I D G+ +L L +LK
Sbjct: 133 VAALASCEKLEELMLTECAIQDDALETIGQLPALTLLSLSETPITDAGMFHLQSLPHLKT 192
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L DT V G L T+L I+LS I+ ++ L +L+ L L +TD
Sbjct: 193 LYLRDTAVTGEGFAMLKSSTDLRLIDLSDNSINRSTIETLRSFPNLERLYLGRTSLTD 250
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 106/260 (40%), Gaps = 34/260 (13%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+++D HL L +L L+ ++ +T + ++ L L L LER G+ L
Sbjct: 79 RMTDNAASHLVMLQSLQRLNLNQSG-VTDKSLEIMGALPELRSLYLERTAVTSAGVAALA 137
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
KLE L + C I D ++ + L L L +S + +TD+G+ +L+ L L L L
Sbjct: 138 SCEKLEELMLTEC-AIQDDALETIGQLPALTLLSLSETPITDAGMFHLQSLPHLKTLYLR 196
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
VT +G L++++L N I + L
Sbjct: 197 DTAVTG------------------------EGFAMLKSSTDLRLIDLSDNSINRSTIETL 232
Query: 273 KGLTNLESLNLDSCGIGDEGLVNL--------TGLCNLKCLELSDTQVGSSGLRHLSGLT 324
+ NLE L L + DE L L L +E+ T + L+ L+ L
Sbjct: 233 RSFPNLERLYLGRTSLTDELLPEFIDTLIRFNPHLRGLAIMEVPITDNSLTPLKRLAELP 292
Query: 325 NLESINLSFTGISDGSLRKL 344
+L ++ TG++ G+ ++L
Sbjct: 293 DLAVVDFRETGVTRGAFQEL 312
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 1/139 (0%)
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
L ++ ++TD + L L L L+L + +TD + LRSL + +T AG
Sbjct: 73 LRANSARMTDNAASHLVMLQSLQRLNLNQSGVTDKSLEIMGALPELRSLYLERTAVTSAG 132
Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 472
V + L L L++ C + D LE I L L L++S + IT AG+ HL+ L +L+
Sbjct: 133 VAALASCEKLEELMLTE-CAIQDDALETIGQLPALTLLSLSETPITDAGMFHLQSLPHLK 191
Query: 473 SLTLESCKVTANDIKRLQS 491
+L L VT L+S
Sbjct: 192 TLYLRDTAVTGEGFAMLKS 210
>gi|290993827|ref|XP_002679534.1| predicted protein [Naegleria gruberi]
gi|284093151|gb|EFC46790.1| predicted protein [Naegleria gruberi]
Length = 305
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 96/197 (48%), Gaps = 17/197 (8%)
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
L G+ NL L +S Q+G G + +SG+ LE + L F + + ++ + +L SL +
Sbjct: 40 LQGMNNLTSLNISSQQIGPEGAKLVSGVKQLEKLILVFNNVGTEGAKYISEMENLTSLII 99
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG--------- 406
+ I D G L+ + LT+LD+ I + G +RN LRS CG
Sbjct: 100 RSNNIGDEGAIHLSGMKKLTNLDVSDNMIREDGMRAIRNMTQLRSFVDCGSCALEEVSKM 159
Query: 407 -GLTDAGVKH------IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
LT V H I ++LT L++ C + D LELIS L L VSN+ ITS
Sbjct: 160 DQLTYLDVSHNLSGAAIGKFNNLTWLSMVNTC-IGDNELELISKYPKLTKLFVSNNFITS 218
Query: 460 AGLRHLKPLKNLRSLTL 476
G++ L +K L++L +
Sbjct: 219 EGVKPLSEMKQLKALHI 235
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 133/284 (46%), Gaps = 11/284 (3%)
Query: 199 YLKGLQKLTLLNLEGCPVTAACL-DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
+L + +L + L+ + +L + +L LN++ Q+ +G + S + L+ L
Sbjct: 14 FLGNIHRLMIYKLDDNAIYGEVFYRALQGMNNLTSLNISSQQIGPEGAKLVSGVKQLEKL 73
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
L FN + E ++ + NL SL + S IGDEG ++L+G+ L L++SD + G+
Sbjct: 74 ILVFNNVGTEGAKYISEMENLTSLIIRSNNIGDEGAIHLSGMKKLTNLDVSDNMIREDGM 133
Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
R + +T L SF +L +++ + L L++ + AA+ LT L
Sbjct: 134 RAIRNMTQLR----SFVDCGSCALEEVSKMDQLTYLDVSH----NLSGAAIGKFNNLTWL 185
Query: 378 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
+ I D+ + + L L + +T GVK + ++ L L++ N + ++
Sbjct: 186 SMVNTCIGDNELELISKYPKLTKLFVSNNFITSEGVKPLSEMKQLKALHIGDN-GINEEG 244
Query: 438 LELISGLTGLVSLNVSNSRITSAGLRHLKPLK-NLRSLTLESCK 480
+++IS + L LNV I+ L +K L+SL + C+
Sbjct: 245 VKIISEMKQLTELNVEGLNISENDREVLLCMKSQLKSLNITGCE 288
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 130/264 (49%), Gaps = 14/264 (5%)
Query: 103 RGLSNLTSLSFRR--NNAITAQGM-KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
R L N+ L + +NAI + +A G+ NL L++ G + G+ +LE
Sbjct: 13 RFLGNIHRLMIYKLDDNAIYGEVFYRALQGMNNLTSLNISSQQIGPEGAKLVSGVKQLEK 72
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L + + N T+ K +S + NL SL I + + D G +L G++KLT L++ +
Sbjct: 73 LILVFNNVGTEG-AKYISEMENLTSLIIRSNNIGDEGAIHLSGMKKLTNLDVSDNMIRED 131
Query: 220 CLDSLSALGSLF-YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
+ ++ + L +++ C L E+ SK+ L L++ N ++ + LT L
Sbjct: 132 GMRAIRNMTQLRSFVDCGSCAL-----EEVSKMDQLTYLDVSHN-LSGAAIGKFNNLTWL 185
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
+N +C IGD L ++ L L +S+ + S G++ LS + L+++++ GI++
Sbjct: 186 SMVN--TC-IGDNELELISKYPKLTKLFVSNNFITSEGVKPLSEMKQLKALHIGDNGINE 242
Query: 339 GSLRKLAGLSSLKSLNLDARQITD 362
++ ++ + L LN++ I++
Sbjct: 243 EGVKIISEMKQLTELNVEGLNISE 266
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 85/213 (39%), Gaps = 42/213 (19%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++V G ++ + NL SL I D G HL G+ LT+L +N I GM+A
Sbjct: 78 NNVGTEGAKYISEMENLTSLIIR-SNNIGDEGAIHLSGMKKLTNLDVS-DNMIREDGMRA 135
Query: 127 FAGLINLVKL------DLERCTRIHGGLV-----NLKGLMKLESLNIKWC---------- 165
+ L LE +++ NL G + N+ W
Sbjct: 136 IRNMTQLRSFVDCGSCALEEVSKMDQLTYLDVSHNLSGAAIGKFNNLTWLSMVNTCIGDN 195
Query: 166 ------------------NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
N IT +KPLS + LK+L I + + + G+ + +++LT
Sbjct: 196 ELELISKYPKLTKLFVSNNFITSEGVKPLSEMKQLKALHIGDNGINEEGVKIISEMKQLT 255
Query: 208 LLNLEGCPVTAACLDSLSALGS-LFYLNLNRCQ 239
LN+EG ++ + L + S L LN+ C+
Sbjct: 256 ELNVEGLNISENDREVLLCMKSQLKSLNITGCE 288
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 110/239 (46%), Gaps = 12/239 (5%)
Query: 53 ASQG-SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111
A QG ++L S+++S + G + L+ L F + G +++ + NLTSL
Sbjct: 39 ALQGMNNLTSLNISSQQIGPEGAKLVSGVKQLEKLILVFN-NVGTEGAKYISEMENLTSL 97
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
R NN I +G +G+ L LD+ G+ ++ + +L S + +C
Sbjct: 98 IIRSNN-IGDEGAIHLSGMKKLTNLDVSDNMIREDGMRAIRNMTQLRS----FVDC-GSC 151
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
++ +S + L L +S ++ + I L L+++N C + L+ +S L
Sbjct: 152 ALEEVSKMDQLTYLDVS-HNLSGAAIGKFNNLTWLSMVNT--C-IGDNELELISKYPKLT 207
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L ++ ++ +G + S++ LK L++G N I +E + + + L LN++ I +
Sbjct: 208 KLFVSNNFITSEGVKPLSEMKQLKALHIGDNGINEEGVKIISEMKQLTELNVEGLNISE 266
>gi|48096980|ref|XP_393659.1| PREDICTED: f-box/LRR-repeat protein 14 [Apis mellifera]
gi|380017700|ref|XP_003692785.1| PREDICTED: F-box/LRR-repeat protein 14-like [Apis florea]
Length = 481
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 141/279 (50%), Gaps = 50/279 (17%)
Query: 68 DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++T+ GL+ + + L+ LD C Q+SD G+ HL G++ +A
Sbjct: 242 NITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNR-----------------EA 284
Query: 127 FAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
G + L L L+ C R+ L ++ GL L+S+N+ +C CITDS +K L+ +++L+
Sbjct: 285 AGGNLALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRE 344
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNRCQL 240
L + SC V+D G+AYL +G +++ L++ C A + L +L L+L+ CQ+
Sbjct: 345 LNLRSCDNVSDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQI 404
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-G 298
SD+G K +K L +LE+LN+ C + D+GL +
Sbjct: 405 SDEGICKIAKT-----------------------LHDLETLNIGQCSRLTDKGLYTIAES 441
Query: 299 LCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGI 336
+ +LKC++L T++ ++GL + L L ++NL +
Sbjct: 442 MKHLKCIDLYGCTRISTNGLERIMKLPQLSTLNLGLWHV 480
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 102/323 (31%), Positives = 160/323 (49%), Gaps = 42/323 (13%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
L G+ NL++L +S C +TD+G+ A+ + LT LNL C + +LG +
Sbjct: 173 LKGVPNLEALNLSGCYNITDAGLINAFCQEYTTLTELNLSLCKQVSDI-----SLGRIVQ 227
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDE 291
N L GC + G +L + +N L L+ L+L SC + D
Sbjct: 228 YLKNLEHLELGGCCNITNGG---LLCIAWN------------LKKLKRLDLRSCWQVSDL 272
Query: 292 GLVNLTGL--------CNLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGS 340
G+ +L G+ L+ L L D Q + LRH+S GLT L+SINLSF I+D
Sbjct: 273 GIAHLAGVNREAAGGNLALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSG 332
Query: 341 LRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFK 396
L+ LA +SSL+ LNL + ++D G+A L + ++ LD+ F +I D ++ +
Sbjct: 333 LKHLAKMSSLRELNLRSCDNVSDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLF 392
Query: 397 NLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN 454
NL+ L + ++D G+ K K L L LN+ Q LTDK L I+ + L +++
Sbjct: 393 NLKLLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYG 452
Query: 455 -SRITSAGLRHLKPLKNLRSLTL 476
+RI++ GL + L L +L L
Sbjct: 453 CTRISTNGLERIMKLPQLSTLNL 475
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 158/325 (48%), Gaps = 68/325 (20%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGL------EH----------------------LRGLSNL 108
LK NL++L+ + C I+D GL E+ ++ L NL
Sbjct: 173 LKGVPNLEALNLSGCYNITDAGLINAFCQEYTTLTELNLSLCKQVSDISLGRIVQYLKNL 232
Query: 109 TSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGL--------MKLE 158
L IT G+ A L L +LDL C ++ G+ +L G+ + LE
Sbjct: 233 EHLELGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNREAAGGNLALE 292
Query: 159 SLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L+++ C ++D ++ +S GLT LKS+ +S C +TDSG+ +L + L LNL C
Sbjct: 293 HLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRELNLRSC-- 350
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KG 274
D++S +G + L++ G S+I SL V F ++I D+ LVH+ +G
Sbjct: 351 -----DNVSDIGMAY--------LAEGG----SRISSLDV---SFCDKIGDQALVHISQG 390
Query: 275 LTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL 331
L NL+ L+L +C I DEG+ + L +L+ L + +++ GL ++ + +L+ I+L
Sbjct: 391 LFNLKLLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDL 450
Query: 332 -SFTGISDGSLRKLAGLSSLKSLNL 355
T IS L ++ L L +LNL
Sbjct: 451 YGCTRISTNGLERIMKLPQLSTLNL 475
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 98/305 (32%), Positives = 161/305 (52%), Gaps = 30/305 (9%)
Query: 151 LKGLMKLESLNIKWCNCITDSDM--KPLSGLTNLKSLQIS-CSKVTDSG----IAYLKGL 203
LKG+ LE+LN+ C ITD+ + T L L +S C +V+D + YLK L
Sbjct: 173 LKGVPNLEALNLSGCYNITDAGLINAFCQEYTTLTELNLSLCKQVSDISLGRIVQYLKNL 232
Query: 204 QKLTLLNLEGCPVTAACLDSLSA-LGSLFYLNLNRC-QLSDDGCEKFSKI------GSLK 255
+ L L C +T L ++ L L L+L C Q+SD G + + G+L
Sbjct: 233 EHLELGGC--CNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNREAAGGNLA 290
Query: 256 VLNLGFNE---ITDECLVHLK-GLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SD 309
+ +L + ++DE L H+ GLT L+S+NL C I D GL +L + +L+ L L S
Sbjct: 291 LEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRELNLRSC 350
Query: 310 TQVGSSGLRHLS-GLTNLESINLSFT-GISDGSLRKLA-GLSSLKSLNLDARQITDTGLA 366
V G+ +L+ G + + S+++SF I D +L ++ GL +LK L+L A QI+D G+
Sbjct: 351 DNVSDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEGIC 410
Query: 367 ALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSL 422
+ +L L L++ +R+TD G + + K+L+ +++ G ++ G++ I L L
Sbjct: 411 KIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQL 470
Query: 423 TLLNL 427
+ LNL
Sbjct: 471 STLNL 475
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 120/247 (48%), Gaps = 39/247 (15%)
Query: 28 FRDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD---VTDSGLIHLK-DCSN 82
R C + DL + GVN + + G +L LS D ++D L H+ +
Sbjct: 263 LRSCWQVSDLGIAHLAGVNRE------AAGGNLALEHLSLQDCQRLSDEALRHVSIGLTT 316
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L+S++ +FC+ I+D GL+HL +S+L L+ R + ++ GM A
Sbjct: 317 LKSINLSFCVCITDSGLKHLAKMSSLRELNLRSCDNVSDIGMAYLA-------------- 362
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYL- 200
+G ++ SL++ +C+ I D + +S GL NLK L +S +++D GI +
Sbjct: 363 ---------EGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEGICKIA 413
Query: 201 KGLQKLTLLNLEGCP-VTAACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVL 257
K L L LN+ C +T L +++ ++ L ++L C ++S +G E+ K+ L L
Sbjct: 414 KTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQLSTL 473
Query: 258 NLGFNEI 264
NLG +
Sbjct: 474 NLGLWHV 480
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 126/247 (51%), Gaps = 36/247 (14%)
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVN-----LTGLCNLK---CLELSDTQVGSSGLRHLSG 322
LKG+ NLE+LNL C I D GL+N T L L C ++SD +G R +
Sbjct: 173 LKGVPNLEALNLSGCYNITDAGLINAFCQEYTTLTELNLSLCKQVSDISLG----RIVQY 228
Query: 323 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 372
L NLE + L I++G L +A L LK L+L + Q++D G+A L +
Sbjct: 229 LKNLEHLELGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNREAAGGN 288
Query: 373 -GLTHLDLFG-ARITDSGAAYLR-NFKNLRSLE----ICGGGLTDAGVKHIKDLSSLTLL 425
L HL L R++D ++ L+S+ +C +TD+G+KH+ +SSL L
Sbjct: 289 LALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVC---ITDSGLKHLAKMSSLREL 345
Query: 426 NLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 482
NL N++D + L G + + SL+VS +I L H+ + L NL+ L+L +C+++
Sbjct: 346 NLRSCDNVSDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQIS 405
Query: 483 ANDIKRL 489
I ++
Sbjct: 406 DEGICKI 412
>gi|290989491|ref|XP_002677371.1| Hypothetical protein NAEGRDRAFT_67509 [Naegleria gruberi]
gi|284090978|gb|EFC44627.1| Hypothetical protein NAEGRDRAFT_67509 [Naegleria gruberi]
Length = 350
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 140/314 (44%), Gaps = 22/314 (7%)
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N + ++ +K SG NL L + + + +L L +LT LN++ + +DS+
Sbjct: 56 INILLETLLKSFSG-RNLTKLDLRRNFIHAKLAEHLGNLHQLTDLNVDDSFIVEPAIDSI 114
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
L L L++N L + ++ L VL++ N + L+ L+NL LN+
Sbjct: 115 RYLTKLSTLSINSNNLKTKELKIIKEMKQLTVLSIAKNSMQSGGAKLLRNLSNLTILNIS 174
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
+ IG+EG L + L L +S T + S G+ +L+ NL +N F+G + SLR
Sbjct: 175 NNRIGNEGWKYLCSMKQLTKLNISGTNISSEGISYLTNFPNLTELN--FSG--NTSLR-- 228
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
Q L+ L LT L + I D Y+ + L SL +
Sbjct: 229 ------------FSQKVQEQLSELKYLTKLVINYIHPIPIDD--LQYIHKLEKLTSLSLK 274
Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
+ DA HI LT L+++ N NL+D E S L L LN+S + ++ G+
Sbjct: 275 SNFMYDASAIHISKCEKLTYLDVAIN-NLSDAAAEAFSHLPNLKYLNISENYLSKKGVEL 333
Query: 465 LKPLKNLRSLTLES 478
L+ + L SL ES
Sbjct: 334 LRNMPQLTSLIYES 347
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 89/195 (45%), Gaps = 4/195 (2%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
+ GG + LR LSNLT L+ NN I +G K + L KL++ G+ L
Sbjct: 154 MQSGGAKLLRNLSNLTILNIS-NNRIGNEGWKYLCSMKQLTKLNISGTNISSEGISYLTN 212
Query: 154 LMKLESLNIKWCNCITDSD--MKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLN 210
L LN + S + LS L L L I+ + + Y+ L+KLT L+
Sbjct: 213 FPNLTELNFSGNTSLRFSQKVQEQLSELKYLTKLVINYIHPIPIDDLQYIHKLEKLTSLS 272
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L+ + A +S L YL++ LSD E FS + +LK LN+ N ++ + +
Sbjct: 273 LKSNFMYDASAIHISKCEKLTYLDVAINNLSDAAAEAFSHLPNLKYLNISENYLSKKGVE 332
Query: 271 HLKGLTNLESLNLDS 285
L+ + L SL +S
Sbjct: 333 LLRNMPQLTSLIYES 347
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 3/157 (1%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDF--NFCIQISDGGLEHLRGLSNLTSLSFRRN 116
L +++SG++++ G+ +L + NL L+F N ++ S E L L LT L
Sbjct: 192 LTKLNISGTNISSEGISYLTNFPNLTELNFSGNTSLRFSQKVQEQLSELKYLTKLVINYI 251
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ I ++ L L L L+ +++ KL L++ N ++D+ +
Sbjct: 252 HPIPIDDLQYIHKLEKLTSLSLKSNFMYDASAIHISKCEKLTYLDVA-INNLSDAAAEAF 310
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
S L NLK L IS + ++ G+ L+ + +LT L E
Sbjct: 311 SHLPNLKYLNISENYLSKKGVELLRNMPQLTSLIYES 347
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 4/141 (2%)
Query: 358 RQITDTGLAA-LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
R LA L +L LT L++ + I + +R L +L I L +K I
Sbjct: 79 RNFIHAKLAEHLGNLHQLTDLNVDDSFIVEPAIDSIRYLTKLSTLSINSNNLKTKELKII 138
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
K++ LT+L++++N + +L+ L+ L LN+SN+RI + G ++L +K L L +
Sbjct: 139 KEMKQLTVLSIAKNS-MQSGGAKLLRNLSNLTILNISNNRIGNEGWKYLCSMKQLTKLNI 197
Query: 477 ESCKVTANDIKRLQSRDLPNL 497
+++ I L + PNL
Sbjct: 198 SGTNISSEGISYLT--NFPNL 216
>gi|343414369|emb|CCD21014.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
Length = 469
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 131/403 (32%), Positives = 203/403 (50%), Gaps = 49/403 (12%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
LQ LD + C ++D + L + L L IT + + L +L LD+ CT
Sbjct: 22 LQKLDLSHCTGVTD--VSPLSKMIGLEKLYLSHCTGIT--DVPPLSKLSSLRTLDISHCT 77
Query: 143 RIHGGLVNLKGLMKLES---LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIA 198
G+ ++ L KL + L++ C ITD + PLS L++L+ L S C+ +TD ++
Sbjct: 78 ----GITDVSPLSKLNNFVQLDLSHCTGITD--VSPLSVLSSLRMLFFSHCTGITD--VS 129
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
L L L L+L C + LS L SL L+L+ C + SK+ SL L+
Sbjct: 130 PLSVLSSLRTLDLSYC-TGIKHVSPLSKLSSLEKLDLSHCT-AIKHVSPLSKLSSLCTLD 187
Query: 259 LGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
L + I E L L++L +L+L C GI D + L+ L +L+ L+LS G +
Sbjct: 188 LSYCTGIKHE--SPLSKLSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCT-GITD 242
Query: 317 LRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGL 374
+ LS L++L +++LS TGI+D S L+ LSSL++L+L ITD ++ L+ L+ L
Sbjct: 243 VSPLSELSSLRTLDLSHCTGITDVS--PLSKLSSLRTLDLSHCTGITD--VSPLSELSSL 298
Query: 375 THLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCN 432
LDL ITD + L +LR L + G+TD V + +LSSL +L+LS
Sbjct: 299 RTLDLSHCTGITD--VSPLSELSSLRMLYLSHCTGITD--VSPLSELSSLRMLDLSHCTG 354
Query: 433 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
+TD +S L+ L SL++ GL H + ++ LT
Sbjct: 355 ITD-----VSPLSELSSLHI-------LGLSHCTGITDVSPLT 385
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 113/233 (48%), Gaps = 20/233 (8%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
+L+ L L G+ D S+ SSL ++DLS + +TD L + S+L++LD +
Sbjct: 251 SLRTLDLSHCTGITDVSP---LSKLSSLRTLDLSHCTGITDVS--PLSELSSLRTLDLSH 305
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
C I+D + L LS+L L IT + + L +L LDL CT G+ +
Sbjct: 306 CTGITD--VSPLSELSSLRMLYLSHCTGIT--DVSPLSELSSLRMLDLSHCT----GITD 357
Query: 151 LKGLMKLESLNI-KWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTL 208
+ L +L SL+I +C +D+ PL+ + + L +S C+ +TD ++ L L L
Sbjct: 358 VSPLSELSSLHILGLSHCTGITDVSPLTTIIGFEKLYLSNCTGITD--VSPLSKLSSLRS 415
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
L+L C + LS L SL L+++ C D SK+ SL +L L
Sbjct: 416 LDLSHC-TGITDVSPLSELSSLRTLDISHCTGITD-VSPLSKLSSLHILGLSH 466
>gi|406835554|ref|ZP_11095148.1| ribonuclease inhibitor [Schlesneria paludicola DSM 18645]
Length = 392
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 146/313 (46%), Gaps = 15/313 (4%)
Query: 190 SKVTDSGIAYL----KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
S++ DS I L +GL ++T +N + VT+A S+S L L L L+ +++++ C
Sbjct: 72 SEINDSAITQLTSLSEGLNEITEINADFSTVTSAAFASISKLSKLRQLRLSSTRVTNEAC 131
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
EK +++ +L+VL L + D + L L+NL+SL L C + G + L+ L
Sbjct: 132 EKIAELPALEVLILSDTVVDDVGVAALSRLSNLKSLELSRCHLTRAGFQAIGAFPALEYL 191
Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
E+ T + L + L S+ LS I+D L L L ++ L + I GL
Sbjct: 192 EIRRTNLDDVSLDLVCNAKTLVSLRLSNNPITDQGLDALGKLPGIEVLEFNETGIHGWGL 251
Query: 366 AALTSLTG---LTHLDLFGARITDSGAAYLRNFKNLRSL---EICGGGLTDAG-VKHIKD 418
A G L L LF + GA + NFK++ L EI L D G + ++
Sbjct: 252 AHAQKRGGGKNLKELSLFKCPLDGMGAKAIGNFKSVEKLVLGEIP--QLDDEGLMTMVRG 309
Query: 419 LSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 476
+ +L LN S+ +L + + G L L++ SRI + +K +KNL+ L +
Sbjct: 310 MKNLKYLNCSKTPSLFGTLGFKALLGSKDLEELHIGECSRIGDDAVPFIKKMKNLKILRV 369
Query: 477 ESCKVTANDIKRL 489
++A + L
Sbjct: 370 HGTSISARGMAEL 382
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 91/192 (47%), Gaps = 4/192 (2%)
Query: 302 LKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
LK E++D+ + + L LS GL + IN F+ ++ + ++ LS L+ L L + ++
Sbjct: 69 LKPSEINDSAI--TQLTSLSEGLNEITEINADFSTVTSAAFASISKLSKLRQLRLSSTRV 126
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
T+ + L L L L + D G A L NL+SLE+ LT AG + I
Sbjct: 127 TNEACEKIAELPALEVLILSDTVVDDVGVAALSRLSNLKSLELSRCHLTRAGFQAIGAFP 186
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
+L L + + NL D +L+L+ LVSL +SN+ IT GL L L + L
Sbjct: 187 ALEYLEI-RRTNLDDVSLDLVCNAKTLVSLRLSNNPITDQGLDALGKLPGIEVLEFNETG 245
Query: 481 VTANDIKRLQSR 492
+ + Q R
Sbjct: 246 IHGWGLAHAQKR 257
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 132/299 (44%), Gaps = 37/299 (12%)
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
+GL ++ +N + + +T + +S L+ L+ L++S ++VT+ + L L +L L
Sbjct: 87 EGLNEITEINADF-STVTSAAFASISKLSKLRQLRLSSTRVTNEACEKIAELPALEVLIL 145
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
V + +LS L +L L L+RC L+ G + +L+ L + + D L
Sbjct: 146 SDTVVDDVGVAALSRLSNLKSLELSRCHLTRAGFQAIGAFPALEYLEIRRTNLDDVSLDL 205
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS---GLTNLES 328
+ L SL L + I D+GL L L ++ LE ++T + GL H G NL+
Sbjct: 206 VCNAKTLVSLRLSNNPITDQGLDALGKLPGIEVLEFNETGIHGWGLAHAQKRGGGKNLKE 265
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLD--------- 378
++L + + + S++ L L + Q+ D GL +T + G+ +L
Sbjct: 266 LSLFKCPLDGMGAKAIGNFKSVEKLVLGEIPQLDDEGL--MTMVRGMKNLKYLNCSKTPS 323
Query: 379 LFG---------------------ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
LFG +RI D +++ KNL+ L + G ++ G+ +
Sbjct: 324 LFGTLGFKALLGSKDLEELHIGECSRIGDDAVPFIKKMKNLKILRVHGTSISARGMAEL 382
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 117/274 (42%), Gaps = 51/274 (18%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS + V D G+ L SNL+SL+ + C ++ G + + L L RR N
Sbjct: 145 LSDTVVDDVGVAALSRLSNLKSLELSRC-HLTRAGFQAIGAFPALEYLEIRRTN------ 197
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
++ V LDL + N K L+ L N N ITD + L L ++
Sbjct: 198 -------LDDVSLDL---------VCNAKTLVSLRLSN----NPITDQGLDALGKLPGIE 237
Query: 184 SLQISCSKVTDSGIAYLK---GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-Q 239
L+ + + + G+A+ + G + L L+L CP+ ++ S+ L L Q
Sbjct: 238 VLEFNETGIHGWGLAHAQKRGGGKNLKELSLFKCPLDGMGAKAIGNFKSVEKLVLGEIPQ 297
Query: 240 LSDDGCEKFSK-IGSLKVLN----------LGFNEITDECLVHLKGLTNLESLNLDSCG- 287
L D+G + + +LK LN LGF L G +LE L++ C
Sbjct: 298 LDDEGLMTMVRGMKNLKYLNCSKTPSLFGTLGFK--------ALLGSKDLEELHIGECSR 349
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
IGD+ + + + NLK L + T + + G+ L+
Sbjct: 350 IGDDAVPFIKKMKNLKILRVHGTSISARGMAELA 383
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 103/224 (45%), Gaps = 19/224 (8%)
Query: 14 LVYSRC-LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDS 72
L SRC LT +A + + ++D +D++ + +L+S+ LS + +TD
Sbjct: 167 LELSRCHLTRAGFQAIGAFPALEYLEIRRTNLDDVSLDLVCN-AKTLVSLRLSNNPITDQ 225
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHLR---GLSNLTSLSFRRNNAITAQGMKAFAG 129
GL L ++ L+FN I GL H + G NL LS + + G KA
Sbjct: 226 GLDALGKLPGIEVLEFNET-GIHGWGLAHAQKRGGGKNLKELSLFK-CPLDGMGAKAIGN 283
Query: 130 LINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDM------KPLSGLTNL 182
++ KL L ++ GL+ + MK N+K+ NC + K L G +L
Sbjct: 284 FKSVEKLVLGEIPQLDDEGLMTMVRGMK----NLKYLNCSKTPSLFGTLGFKALLGSKDL 339
Query: 183 KSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+ L I CS++ D + ++K ++ L +L + G ++A + L+
Sbjct: 340 EELHIGECSRIGDDAVPFIKKMKNLKILRVHGTSISARGMAELA 383
>gi|220932817|ref|YP_002509725.1| hypothetical protein Hore_19830 [Halothermothrix orenii H 168]
gi|219994127|gb|ACL70730.1| leucine-rich repeat protein [Halothermothrix orenii H 168]
Length = 531
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 146/495 (29%), Positives = 230/495 (46%), Gaps = 86/495 (17%)
Query: 20 LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKD 79
LTE S+ +FR + + G +N K + + G + +S D+T L HL D
Sbjct: 66 LTEFSIPSFRHYEINSIK-GLEAFLNIKTLRI----GPNYIS------DLT--PLAHLTD 112
Query: 80 CSNLQSLDFNFCIQISD----GGLEHLRGLSNLTSLSFRR---NNAITAQGMKAFAGLIN 132
L + F I D G L+ LR L +++ + + ++ + L
Sbjct: 113 LERL----YIFENHIEDLSPLGKLKELRELIIRGLPPYKKGLPSGKYSGHYIEDISPLAG 168
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKL---ESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
LVKL+ + + H + NL+ L +L ++LN+ + N I SD+KPL+ LT L L +
Sbjct: 169 LVKLEYLKLS--HQKISNLETLTQLPNLKTLNVAY-NSI--SDLKPLTALTGLSHLDLEA 223
Query: 190 SKVTDSGIAYLKGLQKLTLLNL--------------EGCPVTAACLDSLSALGSLFYL-N 234
+ + D I+ L+GL+KLT LNL EG V + L + SL L N
Sbjct: 224 NNIKD--ISPLRGLKKLTYLNLIRNELTGVKHLSSLEGLQVLLLSGNDLRNIASLTRLVN 281
Query: 235 LNRCQLSDDG---CEKFSKIGSLKVLNLGFNEITD-----ECLVHLKGLTNLESLNLDSC 286
L + +SD+ + LK LN+ N I D EC LE L +C
Sbjct: 282 LEKLDISDNNISVAPGLKEFKGLKELNISGNPIDDINFISEC-------RKLERLLAFNC 334
Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
I D + L G +LK L L + ++ + + L GL LE ++LS I + S+ ++G
Sbjct: 335 EIRD--ISPLRGHNSLKELFLHNNRI--TDISPLEGLNTLERLDLSGNSIENVSV--ISG 388
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
L+ LK L+L+ +T + L L L +L+L RI S L+ NL++L +
Sbjct: 389 LNKLKYLDLEGCGLT--AIEFLKDLGSLEYLELENNRI--SQIEPLKKHINLKTLVLDNN 444
Query: 407 GLTDAGVKHIKDLSSL-TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
IKD+S+L L+NL + +L D +E I LTGL L V I+ +R++
Sbjct: 445 --------QIKDISTLGELMNL-KVLSLNDNQIENIDSLTGLNQLEV--LYISGNRIRNI 493
Query: 466 KPLKNLRSLTLESCK 480
KPL L +L++ + K
Sbjct: 494 KPLLKLNNLSVVAIK 508
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 111/393 (28%), Positives = 179/393 (45%), Gaps = 78/393 (19%)
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITD--SDMKPLSGLTNLKSLQISCSKVTD-SGIAYLK 201
H + ++KGL LNIK + SD+ PL+ LT+L+ L I + + D S + LK
Sbjct: 76 HYEINSIKGLEAF--LNIKTLRIGPNYISDLTPLAHLTDLERLYIFENHIEDLSPLGKLK 133
Query: 202 GLQKLTLLNL----EGCP---VTAACLDSLSALGSLF---YLNLNRCQLSDDGCEKFSKI 251
L++L + L +G P + ++ +S L L YL L+ ++S+ E +++
Sbjct: 134 ELRELIIRGLPPYKKGLPSGKYSGHYIEDISPLAGLVKLEYLKLSHQKISN--LETLTQL 191
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
+LK LN+ +N I+D L L LT L L+L++ I D + L GL L L L +
Sbjct: 192 PNLKTLNVAYNSISD--LKPLTALTGLSHLDLEANNIKD--ISPLRGLKKLTYLNLIRNE 247
Query: 312 VGSSGLRHLSGLTNLES-----------------INLSFTGISDGSLRKLAGLSS---LK 351
+ +G++HLS L L+ +NL ISD ++ GL LK
Sbjct: 248 L--TGVKHLSSLEGLQVLLLSGNDLRNIASLTRLVNLEKLDISDNNISVAPGLKEFKGLK 305
Query: 352 SLNLDARQITDTGLAA-----------------LTSLTG---LTHLDLFGARITDSGAAY 391
LN+ I D + ++ L G L L L RITD +
Sbjct: 306 ELNISGNPIDDINFISECRKLERLLAFNCEIRDISPLRGHNSLKELFLHNNRITD--ISP 363
Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
L L L++ G + + V I L+ L L+L + C LT +E + L L L
Sbjct: 364 LEGLNTLERLDLSGNSIENVSV--ISGLNKLKYLDL-EGCGLT--AIEFLKDLGSLEYLE 418
Query: 452 VSNSRITSAGLRHLKPLK---NLRSLTLESCKV 481
+ N+RI+ ++PLK NL++L L++ ++
Sbjct: 419 LENNRIS-----QIEPLKKHINLKTLVLDNNQI 446
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 103/304 (33%), Positives = 147/304 (48%), Gaps = 50/304 (16%)
Query: 192 VTDSGIAYLKG--LQKLTLLNL---EGCPVTAACLDSLS--ALGSLFYLNLNRCQLSDDG 244
V D+GI + L+K+ + +L EG PV +++L+ ++ S + +N + G
Sbjct: 30 VEDTGIIVFEDEDLKKVVMRSLSKPEG-PVFRPEVENLTEFSIPSFRHYEINSIK----G 84
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
E F I +L++ G N I+D L L LT+LE L + I D L L L L+
Sbjct: 85 LEAFLNIKTLRI---GPNYISD--LTPLAHLTDLERLYIFENHIED--LSPLGKLKELRE 137
Query: 305 LELSDTQVGSSGLR-------------HLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
L + GL L+GL LE + LS IS+ L L L +LK
Sbjct: 138 LIIRGLPPYKKGLPSGKYSGHYIEDISPLAGLVKLEYLKLSHQKISN--LETLTQLPNLK 195
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
+LN+ I+D L LT+LTGL+HLDL I D + LR K L L + LT
Sbjct: 196 TLNVAYNSISD--LKPLTALTGLSHLDLEANNIKD--ISPLRGLKKLTYLNLIRNELT-- 249
Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS---LNVSNSRITSA-GLRHLKP 467
GVKH+ L L +L LS N L I+ LT LV+ L++S++ I+ A GL+ K
Sbjct: 250 GVKHLSSLEGLQVLLLSGN------DLRNIASLTRLVNLEKLDISDNNISVAPGLKEFKG 303
Query: 468 LKNL 471
LK L
Sbjct: 304 LKEL 307
>gi|149173875|ref|ZP_01852504.1| hypothetical protein PM8797T_05540 [Planctomyces maris DSM 8797]
gi|148847405|gb|EDL61739.1| hypothetical protein PM8797T_05540 [Planctomyces maris DSM 8797]
Length = 525
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 101/387 (26%), Positives = 162/387 (41%), Gaps = 44/387 (11%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
+ G+ TD GL ++ L+ LD + Q++D G+ HL L L L T
Sbjct: 104 IKGNHFTDDGLRYVGQLKKLRYLDLSVNYQLTDAGMRHLESLKQLEHLDLSGCRRFTDAS 163
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK-----WCN------------ 166
K+ A L +L L L + + L L L +L+ L +K W N
Sbjct: 164 GKSLAQLTSLRTLKLRQTSLTPDVLTALSQLPELKHLAVKYSKGMWLNENTIVPLEKMPL 223
Query: 167 ------CITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNL---EGCPV 216
I D ++ ++ + +LKSL + + D ++YL ++++ LN+ G
Sbjct: 224 EELEGMLIKDENLPLIAQMKSLKSLPFEQDRSIKDDQLSYLTHIRQIKKLNIVLTRGTSD 283
Query: 217 TAACLDSLSALGSLFYLNL---NRCQ---LSDDGCEKFSKIGSLKVLNLGF-NEITDECL 269
T+ + L AL L L++ N + L G +KI +LK L +G N E +
Sbjct: 284 TSQLI-QLQALPELETLSISLGNSTEGDPLDRSGLLALAKIPALKELGIGLVNVPILEAI 342
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
H + L +LN+D+ L L + LK L + V L + +LE I
Sbjct: 343 SHCTQVQKL-NLNVDTSQFQPTDLAYLKEMSRLKDLTVQIALVSDDLWATLGQVKSLEEI 401
Query: 330 NLSF--------TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
+ ++ S SL++L L LK L+L+ +TD GL L L L L
Sbjct: 402 SFNWGWPPQKEPPPFSMTSLKQLQNLPRLKGLDLNGFPVTDEGLGYLGQCRTLERLGLNN 461
Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGL 408
A IT++G LR+ L+ L G +
Sbjct: 462 APITNAGLLQLRHLSQLKKLSFYGSKI 488
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 99/407 (24%), Positives = 173/407 (42%), Gaps = 71/407 (17%)
Query: 92 IQISDGGLEHLRGLSNLTSLSFR-----RNNAITAQGMKAFAGLINLVKLDLERCTRI-H 145
+ ++D L L+ L + +L+ R + N T G++ L L LDL ++
Sbjct: 77 LPLADDDLTVLKELPEVQTLTLRGVHTIKGNHFTDDGLRYVGQLKKLRYLDLSVNYQLTD 136
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS---------- 195
G+ +L+ L +LE L++ C TD+ K L+ LT+L++L++ + +T
Sbjct: 137 AGMRHLESLKQLEHLDLSGCRRFTDASGKSLAQLTSLRTLKLRQTSLTPDVLTALSQLPE 196
Query: 196 ----GIAYLKG----------LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-L 240
+ Y KG L+K+ L LEG + L ++ + SL L + + +
Sbjct: 197 LKHLAVKYSKGMWLNENTIVPLEKMPLEELEGMLIKDENLPLIAQMKSLKSLPFEQDRSI 256
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDEC--LVHLKGLTNLE--SLNLDSCGIGDE----G 292
DD + I +K LN+ T + L+ L+ L LE S++L + GD G
Sbjct: 257 KDDQLSYLTHIRQIKKLNIVLTRGTSDTSQLIQLQALPELETLSISLGNSTEGDPLDRSG 316
Query: 293 LVNLT----------GLCNLKCLE--------------LSDTQVGSSGLRHLSGLTNLES 328
L+ L GL N+ LE + +Q + L +L ++ L+
Sbjct: 317 LLALAKIPALKELGIGLVNVPILEAISHCTQVQKLNLNVDTSQFQPTDLAYLKEMSRLKD 376
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNL--------DARQITDTGLAALTSLTGLTHLDLF 380
+ + +SD L + SL+ ++ + + T L L +L L LDL
Sbjct: 377 LTVQIALVSDDLWATLGQVKSLEEISFNWGWPPQKEPPPFSMTSLKQLQNLPRLKGLDLN 436
Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
G +TD G YL + L L + +T+AG+ ++ LS L L+
Sbjct: 437 GFPVTDEGLGYLGQCRTLERLGLNNAPITNAGLLQLRHLSQLKKLSF 483
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 381 GARITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
G TD G Y+ K LR L++ LTDAG++H++ L L L+LS TD + +
Sbjct: 106 GNHFTDDGLRYVGQLKKLRYLDLSVNYQLTDAGMRHLESLKQLEHLDLSGCRRFTDASGK 165
Query: 440 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
++ LT L +L + + +T L L L L+ L ++ K
Sbjct: 166 SLAQLTSLRTLKLRQTSLTPDVLTALSQLPELKHLAVKYSK 206
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
+DL+G VTD GL +L C L+ L N I++ GL LR LS L LSF
Sbjct: 433 LDLNGFPVTDEGLGYLGQCRTLERLGLNNA-PITNAGLLQLRHLSQLKKLSF 483
>gi|167861908|gb|ACA05653.1| InlA [Listeria monocytogenes]
Length = 800
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 125/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QITD L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQITD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|157118403|ref|XP_001659098.1| F-Box protein, putative [Aedes aegypti]
gi|108875753|gb|EAT39978.1| AAEL008262-PA, partial [Aedes aegypti]
Length = 381
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 95/271 (35%), Positives = 142/271 (52%), Gaps = 43/271 (15%)
Query: 152 KGLMKLESLNIKWCNCITDSDMKPL--SGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKLT 207
+G+ K++ L C ITD + + + L NL++L +S C +VTDS + + + L+ +
Sbjct: 132 RGIKKVQILG---CYNITDISLGYVFSTDLLNLRTLDLSLCKQVTDSSLGRIAQHLKNVE 188
Query: 208 LLNLEGCP--VTAACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF 261
+L L GC A L +A G +L YL L CQ LSD+ ++ + SLK +NL F
Sbjct: 189 ILELGGCSNITNTAGLSKETADGTPALEYLGLQDCQRLSDEALRHIAQGLTSLKSINLSF 248
Query: 262 -NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
+TD L HL +T LE LNL +C I D G+ LT
Sbjct: 249 CVSVTDSGLKHLAKMTKLEELNLRACDNISDIGMAYLT---------------------- 286
Query: 320 LSGLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTH 376
G + + S+++SF I+D +L ++ GL LKSL+L A QITD GLA + SL L
Sbjct: 287 -EGGSAIISLDVSFCDKIADQALTHISQGLFHLKSLSLSACQITDEGLAKIAKSLHDLET 345
Query: 377 LDLFG-ARITDSGAAYLRN-FKNLRSLEICG 405
L++ AR+TD G YL + NLR++++ G
Sbjct: 346 LNIGQCARVTDKGLEYLADELNNLRAIDLYG 376
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 123/235 (52%), Gaps = 29/235 (12%)
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGL----EHLR--------GLSNLTSLSFRRNNAIT 120
G + D NL++LD + C Q++D L +HL+ G SN+T+ + T
Sbjct: 151 GYVFSTDLLNLRTLDLSLCKQVTDSSLGRIAQHLKNVEILELGGCSNITNTAGLSKE--T 208
Query: 121 AQGMKA--FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
A G A + GL + +L E I GL +LK S+N+ +C +TDS +K L+
Sbjct: 209 ADGTPALEYLGLQDCQRLSDEALRHIAQGLTSLK------SINLSFCVSVTDSGLKHLAK 262
Query: 179 LTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLS-ALGSLFYLN 234
+T L+ L + +C ++D G+AYL +G + L++ C + L +S L L L+
Sbjct: 263 MTKLEELNLRACDNISDIGMAYLTEGGSAIISLDVSFCDKIADQALTHISQGLFHLKSLS 322
Query: 235 LNRCQLSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKG-LTNLESLNLDSC 286
L+ CQ++D+G K +K + L+ LN+G +TD+ L +L L NL +++L C
Sbjct: 323 LSACQITDEGLAKIAKSLHDLETLNIGQCARVTDKGLEYLADELNNLRAIDLYGC 377
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 109/203 (53%), Gaps = 14/203 (6%)
Query: 254 LKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCG--IGDEGLVNLT--GLCNLKCLEL 307
L+ L+L ++TD L + + L N+E L L C GL T G L+ L L
Sbjct: 161 LRTLDLSLCKQVTDSSLGRIAQHLKNVEILELGGCSNITNTAGLSKETADGTPALEYLGL 220
Query: 308 SDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDT 363
D Q + LRH++ GLT+L+SINLSF ++D L+ LA ++ L+ LNL A I+D
Sbjct: 221 QDCQRLSDEALRHIAQGLTSLKSINLSFCVSVTDSGLKHLAKMTKLEELNLRACDNISDI 280
Query: 364 GLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDL 419
G+A LT + + LD+ F +I D ++ + +L+SL + +TD G+ I K L
Sbjct: 281 GMAYLTEGGSAIISLDVSFCDKIADQALTHISQGLFHLKSLSLSACQITDEGLAKIAKSL 340
Query: 420 SSLTLLNLSQNCNLTDKTLELIS 442
L LN+ Q +TDK LE ++
Sbjct: 341 HDLETLNIGQCARVTDKGLEYLA 363
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 85/152 (55%), Gaps = 6/152 (3%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++D L H+ + ++L+S++ +FC+ ++D GL+HL ++ L L+ R + I+ GM
Sbjct: 226 LSDEALRHIAQGLTSLKSINLSFCVSVTDSGLKHLAKMTKLEELNLRACDNISDIGMAYL 285
Query: 128 A-GLINLVKLDLERCTRI-HGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
G ++ LD+ C +I L ++ +GL L+SL++ C + K L +L++
Sbjct: 286 TEGGSAIISLDVSFCDKIADQALTHISQGLFHLKSLSLSACQITDEGLAKIAKSLHDLET 345
Query: 185 LQI-SCSKVTDSGIAYLKG-LQKLTLLNLEGC 214
L I C++VTD G+ YL L L ++L GC
Sbjct: 346 LNIGQCARVTDKGLEYLADELNNLRAIDLYGC 377
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 105/201 (52%), Gaps = 17/201 (8%)
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDA-R 358
L C ++D S G + L NL +++LS ++D SL ++A L +++ L L
Sbjct: 140 LGCYNITDI---SLGYVFSTDLLNLRTLDLSLCKQVTDSSLGRIAQHLKNVEILELGGCS 196
Query: 359 QITDTGLAALTSLTGLTHLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDA 411
IT+T + + G L+ G R++D ++ + +L+S L C +TD+
Sbjct: 197 NITNTAGLSKETADGTPALEYLGLQDCQRLSDEALRHIAQGLTSLKSINLSFCVS-VTDS 255
Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPL 468
G+KH+ ++ L LNL N++D + L G + ++SL+VS +I L H+ + L
Sbjct: 256 GLKHLAKMTKLEELNLRACDNISDIGMAYLTEGGSAIISLDVSFCDKIADQALTHISQGL 315
Query: 469 KNLRSLTLESCKVTANDIKRL 489
+L+SL+L +C++T + ++
Sbjct: 316 FHLKSLSLSACQITDEGLAKI 336
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHL-KDCSNLQSLDFNF 90
L++L L ++D M + GS+++S+D+S D + D L H+ + +L+SL +
Sbjct: 266 LEELNLRACDNISDIGMAYLTEGGSAIISLDVSFCDKIADQALTHISQGLFHLKSLSLSA 325
Query: 91 CIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDLERCTRI 144
C QI+D GL + + L +L +L+ + +T +G++ A L NL +DL CTR+
Sbjct: 326 C-QITDEGLAKIAKSLHDLETLNIGQCARVTDKGLEYLADELNNLRAIDLYGCTRL 380
>gi|390335362|ref|XP_003724129.1| PREDICTED: uncharacterized protein LOC100890653 [Strongylocentrotus
purpuratus]
Length = 990
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 155/314 (49%), Gaps = 20/314 (6%)
Query: 181 NLKSLQISCSKVTDSGI-AYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNL-NR 237
+L+ L + C K T + + ++ L+ LNL CP +T L +++L L +LNL N
Sbjct: 619 HLQRLALDCYKYTTNELLQTVRPHIHLSSLNLASCPLITDQGLLQITSLKKLQHLNLSNN 678
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITD---ECLVHLKGLTNLESLNLDSCGIGDEGLV 294
L+D + + SL L L +TD E V + NL +L+L+ + D ++
Sbjct: 679 KSLTDKVFQTVQEFSSLTTLLLEGTGVTDAGLETFVAVPP-PNLTNLSLNRTNVTDMAVL 737
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
L L LK L L TQV S L H+ L+ L S+N+S + +L KL ++ LK L+
Sbjct: 738 FLARLSKLKNLGLEQTQVKS--LEHVGHLSQLVSLNVSRNRLQRDALLKLHQVTHLKVLH 795
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG------GGL 408
+ + TG ALT L GL + L + D K + + +C +
Sbjct: 796 ISHVEGI-TGDEALTCLQGLQLMQL---SLPDRHTTTDNGLKCIAGMSLCSIDLTDYSNI 851
Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 468
TDAG+ H+ D++SL L+++ N +T ++ +SGLT L+ L++ + + G + + L
Sbjct: 852 TDAGIHHLADMTSLHKLSIT-NTKVTSAGMQYLSGLTELLELHLDRTLVDDEGAKVIGQL 910
Query: 469 KNLRSLTLESCKVT 482
L+ L++ K+T
Sbjct: 911 TKLQVLSMAETKIT 924
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 108/439 (24%), Positives = 195/439 (44%), Gaps = 65/439 (14%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
+P +++++ EL S L +L F C LQ L L Y ++ + + L S
Sbjct: 589 VPPTVAERLLTELKKSGHLRPKTLMMFIPCHLQRLALDCYKYTTNELLQTVRPH-IHLSS 647
Query: 62 VDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
++L+ +TD GL+ + LQ L+ + ++D + ++ S+LT+L +T
Sbjct: 648 LNLASCPLITDQGLLQITSLKKLQHLNLSNNKSLTDKVFQTVQEFSSLTTL-LLEGTGVT 706
Query: 121 AQGMKAFAGL--INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
G++ F + NL L L R +TD + L+
Sbjct: 707 DAGLETFVAVPPPNLTNLSLNRTN-------------------------VTDMAVLFLAR 741
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L+ LK+L GL++ + +LE + L L LN++R
Sbjct: 742 LSKLKNL----------------GLEQTQVKSLE----------HVGHLSQLVSLNVSRN 775
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNE-IT-DECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+L D K ++ LKVL++ E IT DE L L+GL ++ D D GL +
Sbjct: 776 RLQRDALLKLHQVTHLKVLHISHVEGITGDEALTCLQGLQLMQLSLPDRHTTTDNGLKCI 835
Query: 297 TG--LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
G LC++ + S+ + +G+ HL+ +T+L ++++ T ++ ++ L+GL+ L L+
Sbjct: 836 AGMSLCSIDLTDYSN--ITDAGIHHLADMTSLHKLSITNTKVTSAGMQYLSGLTELLELH 893
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSG--AAYLRNFKNLRSLEICGGGLTDAG 412
LD + D G + LT L L + +ITD + + + ++ L + +++ G
Sbjct: 894 LDRTLVDDEGAKVIGQLTKLQVLSMAETKITDRFLLSNVINSCPHISRLNLSRTNISERG 953
Query: 413 VKHIKDLSSLTLLNLSQNC 431
+ + L LTLLNL C
Sbjct: 954 IT-VLSLPYLTLLNLDYTC 971
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 81/285 (28%), Positives = 143/285 (50%), Gaps = 13/285 (4%)
Query: 43 GVNDKWMDV-IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
GV D ++ +A +L ++ L+ ++VTD ++ L S L++L Q LEH
Sbjct: 704 GVTDAGLETFVAVPPPNLTNLSLNRTNVTDMAVLFLARLSKLKNLGLE---QTQVKSLEH 760
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKLES 159
+ LS L SL+ RN + + + +L L + I G L L+GL +L
Sbjct: 761 VGHLSQLVSLNVSRNR-LQRDALLKLHQVTHLKVLHISHVEGITGDEALTCLQGL-QLMQ 818
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
L++ + TD+ +K ++G++ L S+ ++ S +TD+GI +L + L L++ VT+
Sbjct: 819 LSLPDRHTTTDNGLKCIAGMS-LCSIDLTDYSNITDAGIHHLADMTSLHKLSITNTKVTS 877
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH--LKGLT 276
A + LS L L L+L+R + D+G + ++ L+VL++ +ITD L+ +
Sbjct: 878 AGMQYLSGLTELLELHLDRTLVDDEGAKVIGQLTKLQVLSMAETKITDRFLLSNVINSCP 937
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
++ LNL I + G+ L+ L L L L T V +HL+
Sbjct: 938 HISRLNLSRTNISERGITVLS-LPYLTLLNLDYTCVSVDCAQHLT 981
>gi|383852952|ref|XP_003701989.1| PREDICTED: F-box/LRR-repeat protein 14-like [Megachile rotundata]
Length = 479
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 141/279 (50%), Gaps = 50/279 (17%)
Query: 68 DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++T++GL+ + + L+ LD C Q+SD G+ HL G++ +A
Sbjct: 240 NITNTGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNR-----------------EA 282
Query: 127 FAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
G L L L+ C R+ L ++ GL L+S+N+ +C CITDS +K L+ +++L+
Sbjct: 283 AGGNFALEHLSLQDCQRLSDEALRHISIGLTTLKSINLSFCVCITDSGVKHLAKMSSLRE 342
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNRCQL 240
L + SC ++D G+AYL +G +++ L++ C A + L +L L+L+ CQ+
Sbjct: 343 LNLRSCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQI 402
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-G 298
SD+G K +K L +LE+LN+ C + D+GL +
Sbjct: 403 SDEGICKIAKT-----------------------LHDLETLNIGQCSRLTDKGLYTIAES 439
Query: 299 LCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGI 336
+ +LKC++L T++ ++GL + L L ++NL +
Sbjct: 440 MKHLKCIDLYGCTRISTNGLERIMKLPQLSTLNLGLWHV 478
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 103/323 (31%), Positives = 161/323 (49%), Gaps = 42/323 (13%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
L G+ NL++L +S C +TD+G+ A+ + LT LNL C + +LG +
Sbjct: 171 LRGVPNLEALNLSGCYNITDAGLINAFCQEYSTLTELNLSLCKQVSDI-----SLGRIVQ 225
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDE 291
N L GC + G +L + +N L L+ L+L SC + D
Sbjct: 226 YLKNLEHLELGGCCNITNTG---LLCIAWN------------LKKLKRLDLRSCWQVSDL 270
Query: 292 GLVNLTGL--------CNLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGS 340
G+ +L G+ L+ L L D Q + LRH+S GLT L+SINLSF I+D
Sbjct: 271 GIAHLAGVNREAAGGNFALEHLSLQDCQRLSDEALRHISIGLTTLKSINLSFCVCITDSG 330
Query: 341 LRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFK 396
++ LA +SSL+ LNL + I+D G+A L + ++ LD+ F +I D ++ +
Sbjct: 331 VKHLAKMSSLRELNLRSCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLF 390
Query: 397 NLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN 454
NL+SL + ++D G+ K K L L LN+ Q LTDK L I+ + L +++
Sbjct: 391 NLKSLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYG 450
Query: 455 -SRITSAGLRHLKPLKNLRSLTL 476
+RI++ GL + L L +L L
Sbjct: 451 CTRISTNGLERIMKLPQLSTLNL 473
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 158/325 (48%), Gaps = 68/325 (20%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGL------EH----------------------LRGLSNL 108
L+ NL++L+ + C I+D GL E+ ++ L NL
Sbjct: 171 LRGVPNLEALNLSGCYNITDAGLINAFCQEYSTLTELNLSLCKQVSDISLGRIVQYLKNL 230
Query: 109 TSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGL--------MKLE 158
L IT G+ A L L +LDL C ++ G+ +L G+ LE
Sbjct: 231 EHLELGGCCNITNTGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNREAAGGNFALE 290
Query: 159 SLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L+++ C ++D ++ +S GLT LKS+ +S C +TDSG+ +L + L LNL C
Sbjct: 291 HLSLQDCQRLSDEALRHISIGLTTLKSINLSFCVCITDSGVKHLAKMSSLRELNLRSC-- 348
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KG 274
D++S +G + L++ G S+I SL V F ++I D+ LVH+ +G
Sbjct: 349 -----DNISDIGMAY--------LAEGG----SRISSLDV---SFCDKIGDQALVHISQG 388
Query: 275 LTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL 331
L NL+SL+L +C I DEG+ + L +L+ L + +++ GL ++ + +L+ I+L
Sbjct: 389 LFNLKSLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDL 448
Query: 332 -SFTGISDGSLRKLAGLSSLKSLNL 355
T IS L ++ L L +LNL
Sbjct: 449 YGCTRISTNGLERIMKLPQLSTLNL 473
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 94/305 (30%), Positives = 152/305 (49%), Gaps = 54/305 (17%)
Query: 151 LKGLMKLESLNIKWCNCITDSDM----------------------------KPLSGLTNL 182
L+G+ LE+LN+ C ITD+ + + + L NL
Sbjct: 171 LRGVPNLEALNLSGCYNITDAGLINAFCQEYSTLTELNLSLCKQVSDISLGRIVQYLKNL 230
Query: 183 KSLQI-SCSKVTDSG---IAYLKGLQKLTLLNLEGCPVTA-------ACLDSLSALG--S 229
+ L++ C +T++G IA+ L+KL L+L C + A ++ +A G +
Sbjct: 231 EHLELGGCCNITNTGLLCIAW--NLKKLKRLDLRSCWQVSDLGIAHLAGVNREAAGGNFA 288
Query: 230 LFYLNLNRCQ-LSDDGCEKFS-KIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC 286
L +L+L CQ LSD+ S + +LK +NL F ITD + HL +++L LNL SC
Sbjct: 289 LEHLSLQDCQRLSDEALRHISIGLTTLKSINLSFCVCITDSGVKHLAKMSSLRELNLRSC 348
Query: 287 -GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS-GLTNLESINLSFTGISDGSLR 342
I D G+ L G + L++S ++G L H+S GL NL+S++LS ISD +
Sbjct: 349 DNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQISDEGIC 408
Query: 343 KLAG-LSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNL 398
K+A L L++LN+ ++TD GL + S+ L +DL+G RI+ +G + L
Sbjct: 409 KIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQL 468
Query: 399 RSLEI 403
+L +
Sbjct: 469 STLNL 473
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 126/247 (51%), Gaps = 36/247 (14%)
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVN--------LTGLCNLKCLELSDTQVGSSGLRHLSG 322
L+G+ NLE+LNL C I D GL+N LT L C ++SD +G R +
Sbjct: 171 LRGVPNLEALNLSGCYNITDAGLINAFCQEYSTLTELNLSLCKQVSDISLG----RIVQY 226
Query: 323 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 372
L NLE + L I++ L +A L LK L+L + Q++D G+A L +
Sbjct: 227 LKNLEHLELGGCCNITNTGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNREAAGGN 286
Query: 373 -GLTHLDLFG-ARITDSGAAYLR-NFKNLRSLE----ICGGGLTDAGVKHIKDLSSLTLL 425
L HL L R++D ++ L+S+ +C +TD+GVKH+ +SSL L
Sbjct: 287 FALEHLSLQDCQRLSDEALRHISIGLTTLKSINLSFCVC---ITDSGVKHLAKMSSLREL 343
Query: 426 NLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 482
NL N++D + L G + + SL+VS +I L H+ + L NL+SL+L +C+++
Sbjct: 344 NLRSCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQIS 403
Query: 483 ANDIKRL 489
I ++
Sbjct: 404 DEGICKI 410
>gi|290971703|ref|XP_002668623.1| predicted protein [Naegleria gruberi]
gi|284082100|gb|EFC35879.1| predicted protein [Naegleria gruberi]
Length = 295
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 86/159 (54%), Gaps = 2/159 (1%)
Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
+ +S + L S+N+S GI D + ++ + L SL++ A QI D G L+ + LT L
Sbjct: 126 KFISEMKQLISLNISGNGIGDEEAKFISEMKQLTSLDISANQIGDEGAKYLSEMKQLTSL 185
Query: 378 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
D+ I D GA YL K L SL I G D G K+I ++ LT L++S + +
Sbjct: 186 DISANLIGDEGAKYLSEMKQLISLNI-GKNEIDEGAKYISEMKQLTSLDISY-TQVDVEG 243
Query: 438 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
++ IS + L SLN+ +RI G++ + +K L+SL +
Sbjct: 244 VKFISEMRQLTSLNICGNRIGIEGVKFISEVKQLKSLDI 282
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 1/156 (0%)
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
+ L SLN+ GIGDE ++ + L L++S Q+G G ++LS + L S+++S
Sbjct: 131 MKQLISLNISGNGIGDEEAKFISEMKQLTSLDISANQIGDEGAKYLSEMKQLTSLDISAN 190
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
I D + L+ + L SLN+ +I D G ++ + LT LD+ ++ G ++
Sbjct: 191 LIGDEGAKYLSEMKQLISLNIGKNEI-DEGAKYISEMKQLTSLDISYTQVDVEGVKFISE 249
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
+ L SL ICG + GVK I ++ L L++S N
Sbjct: 250 MRQLTSLNICGNRIGIEGVKFISEVKQLKSLDISYN 285
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 87/168 (51%), Gaps = 1/168 (0%)
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
S++ L LN+ N I DE + + L SL++ + IGDEG L+ + L L++S
Sbjct: 129 SEMKQLISLNISGNGIGDEEAKFISEMKQLTSLDISANQIGDEGAKYLSEMKQLTSLDIS 188
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
+G G ++LS + L S+N+ I +G+ + ++ + L SL++ Q+ G+ +
Sbjct: 189 ANLIGDEGAKYLSEMKQLISLNIGKNEIDEGA-KYISEMKQLTSLDISYTQVDVEGVKFI 247
Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
+ + LT L++ G RI G ++ K L+SL+I + G K I
Sbjct: 248 SEMRQLTSLNICGNRIGIEGVKFISEVKQLKSLDISYNRIGVEGAKFI 295
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 88/169 (52%), Gaps = 1/169 (0%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+S + L LN++ + D+ + S++ L L++ N+I DE +L + L SL++
Sbjct: 128 ISEMKQLISLNISGNGIGDEEAKFISEMKQLTSLDISANQIGDEGAKYLSEMKQLTSLDI 187
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
+ IGDEG L+ + L L + ++ G +++S + L S+++S+T + ++
Sbjct: 188 SANLIGDEGAKYLSEMKQLISLNIGKNEI-DEGAKYISEMKQLTSLDISYTQVDVEGVKF 246
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
++ + L SLN+ +I G+ ++ + L LD+ RI GA ++
Sbjct: 247 ISEMRQLTSLNICGNRIGIEGVKFISEVKQLKSLDISYNRIGVEGAKFI 295
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 94/179 (52%), Gaps = 3/179 (1%)
Query: 160 LNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+N+ + + + DS + K +S + L SL IS + + D ++ +++LT L++ +
Sbjct: 110 VNVTYSDWLLDSFEEAKFISEMKQLISLNISGNGIGDEEAKFISEMKQLTSLDISANQIG 169
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
LS + L L+++ + D+G + S++ L LN+G NEI DE ++ +
Sbjct: 170 DEGAKYLSEMKQLTSLDISANLIGDEGAKYLSEMKQLISLNIGKNEI-DEGAKYISEMKQ 228
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
L SL++ + EG+ ++ + L L + ++G G++ +S + L+S+++S+ I
Sbjct: 229 LTSLDISYTQVDVEGVKFISEMRQLTSLNICGNRIGIEGVKFISEVKQLKSLDISYNRI 287
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 7/159 (4%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G+ D+ I S+ L S+D+S + + D G +L + L SLD + + I D G ++L
Sbjct: 143 GIGDEEAKFI-SEMKQLTSLDISANQIGDEGAKYLSEMKQLTSLDISANL-IGDEGAKYL 200
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
+ L SL+ +N +G K + + L LD+ G+ + + +L SLNI
Sbjct: 201 SEMKQLISLNIGKNE--IDEGAKYISEMKQLTSLDISYTQVDVEGVKFISEMRQLTSLNI 258
Query: 163 KWC-NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
C N I +K +S + LKSL IS +++ G ++
Sbjct: 259 --CGNRIGIEGVKFISEVKQLKSLDISYNRIGVEGAKFI 295
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 80/158 (50%), Gaps = 4/158 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L+S+++SG+ + D + + L SLD + QI D G ++L + LTSL
Sbjct: 129 SEMKQLISLNISGNGIGDEEAKFISEMKQLTSLDIS-ANQIGDEGAKYLSEMKQLTSLDI 187
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K + + L+ L++ + I G + + +L SL+I + + +
Sbjct: 188 SA-NLIGDEGAKYLSEMKQLISLNIGK-NEIDEGAKYISEMKQLTSLDISYTQVDVEG-V 244
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
K +S + L SL I +++ G+ ++ +++L L++
Sbjct: 245 KFISEMRQLTSLNICGNRIGIEGVKFISEVKQLKSLDI 282
>gi|290980538|ref|XP_002672989.1| predicted protein [Naegleria gruberi]
gi|284086569|gb|EFC40245.1| predicted protein [Naegleria gruberi]
Length = 315
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 94/186 (50%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+S + L LN+ ++ D G + +++ L LN+G N I + + + L SL+
Sbjct: 125 ISEMKQLTSLNIYNNRIGDVGAKYINEMKQLTSLNIGGNRIGIKGAKLISEMKQLTSLHT 184
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
+ IGDEG ++ + L L++ Q+G G + +SG+ L S+++ I D +
Sbjct: 185 YNNRIGDEGAKYISEMKQLTSLDIGGNQIGDEGAKLISGMKRLTSLHIYNNRIGDEGAKL 244
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
++G+ L SLN+ +I D G ++ + LT L ++ RI D GA Y+ K L SL I
Sbjct: 245 ISGMKQLTSLNIGVNEIGDEGAKLISGMKRLTSLQIYNNRIGDEGAKYISEMKQLTSLNI 304
Query: 404 CGGGLT 409
G L
Sbjct: 305 GGNELV 310
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 93/181 (51%), Gaps = 1/181 (0%)
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
++ + L L + + ++G G ++++ + L S+N+ I + ++ + L SL+
Sbjct: 125 ISEMKQLTSLNIYNNRIGDVGAKYINEMKQLTSLNIGGNRIGIKGAKLISEMKQLTSLHT 184
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
+I D G ++ + LT LD+ G +I D GA + K L SL I + D G K
Sbjct: 185 YNNRIGDEGAKYISEMKQLTSLDIGGNQIGDEGAKLISGMKRLTSLHIYNNRIGDEGAKL 244
Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
I + LT LN+ N + D+ +LISG+ L SL + N+RI G +++ +K L SL
Sbjct: 245 ISGMKQLTSLNIGVN-EIGDEGAKLISGMKRLTSLQIYNNRIGDEGAKYISEMKQLTSLN 303
Query: 476 L 476
+
Sbjct: 304 I 304
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 106/204 (51%), Gaps = 2/204 (0%)
Query: 160 LNIKWCNCITDSDMKP--LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+N+K+ + + DS + +S + L SL I +++ D G Y+ +++LT LN+ G +
Sbjct: 107 VNVKFSSWLLDSFERAEFISEMKQLTSLNIYNNRIGDVGAKYINEMKQLTSLNIGGNRIG 166
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
+S + L L+ ++ D+G + S++ L L++G N+I DE + G+
Sbjct: 167 IKGAKLISEMKQLTSLHTYNNRIGDEGAKYISEMKQLTSLDIGGNQIGDEGAKLISGMKR 226
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L SL++ + IGDEG ++G+ L L + ++G G + +SG+ L S+ + I
Sbjct: 227 LTSLHIYNNRIGDEGAKLISGMKQLTSLNIGVNEIGDEGAKLISGMKRLTSLQIYNNRIG 286
Query: 338 DGSLRKLAGLSSLKSLNLDARQIT 361
D + ++ + L SLN+ ++
Sbjct: 287 DEGAKYISEMKQLTSLNIGGNELV 310
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 94/190 (49%)
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
S + E S++ L LN+ N I D ++ + L SLN+ IG +G ++ +
Sbjct: 118 SFERAEFISEMKQLTSLNIYNNRIGDVGAKYINEMKQLTSLNIGGNRIGIKGAKLISEMK 177
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
L L + ++G G +++S + L S+++ I D + ++G+ L SL++ +I
Sbjct: 178 QLTSLHTYNNRIGDEGAKYISEMKQLTSLDIGGNQIGDEGAKLISGMKRLTSLHIYNNRI 237
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
D G ++ + LT L++ I D GA + K L SL+I + D G K+I ++
Sbjct: 238 GDEGAKLISGMKQLTSLNIGVNEIGDEGAKLISGMKRLTSLQIYNNRIGDEGAKYISEMK 297
Query: 421 SLTLLNLSQN 430
LT LN+ N
Sbjct: 298 QLTSLNIGGN 307
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 1/162 (0%)
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
+S + L S+N+ I D + + + L SLN+ +I G ++ + LT L
Sbjct: 125 ISEMKQLTSLNIYNNRIGDVGAKYINEMKQLTSLNIGGNRIGIKGAKLISEMKQLTSLHT 184
Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
+ RI D GA Y+ K L SL+I G + D G K I + LT L++ N + D+ +
Sbjct: 185 YNNRIGDEGAKYISEMKQLTSLDIGGNQIGDEGAKLISGMKRLTSLHIYNN-RIGDEGAK 243
Query: 440 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
LISG+ L SLN+ + I G + + +K L SL + + ++
Sbjct: 244 LISGMKQLTSLNIGVNEIGDEGAKLISGMKRLTSLQIYNNRI 285
>gi|290997880|ref|XP_002681509.1| predicted protein [Naegleria gruberi]
gi|284095133|gb|EFC48765.1| predicted protein [Naegleria gruberi]
Length = 226
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 106/215 (49%), Gaps = 5/215 (2%)
Query: 216 VTAACLDS-----LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
V+ LDS +S + L L + ++ D+G + S++ L L + N+I + +
Sbjct: 9 VSENLLDSDNVKFISEMKQLVALFVPTNRIGDEGTKLISEMKQLISLGISKNQIGAKGVK 68
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
+L L L +L+++ IGDEG ++ + L L + D Q+G G++++S + L +
Sbjct: 69 YLCKLKQLIALDINRNRIGDEGAKLISKMKQLTLLHVGDNQIGVKGVKYISEMKQLTCLY 128
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
+ GI D + ++G+ L L++ +I D G ++ + LT L +F RI D GA
Sbjct: 129 IYGNGIGDEGAKLISGMKQLTELSIGHNEIGDEGAKFISEMKQLTELSIFYNRIGDEGAK 188
Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
Y+ K L L+I + D G K I + L L
Sbjct: 189 YISEMKQLTDLDIRHNRIGDKGEKLISGMKKLKRL 223
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 112/222 (50%), Gaps = 1/222 (0%)
Query: 160 LNIKWCNCITDSD-MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+N+ + DSD +K +S + L +L + +++ D G + +++L L + + A
Sbjct: 5 VNVNVSENLLDSDNVKFISEMKQLVALFVPTNRIGDEGTKLISEMKQLISLGISKNQIGA 64
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
+ L L L L++NR ++ D+G + SK+ L +L++G N+I + + ++ + L
Sbjct: 65 KGVKYLCKLKQLIALDINRNRIGDEGAKLISKMKQLTLLHVGDNQIGVKGVKYISEMKQL 124
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
L + GIGDEG ++G+ L L + ++G G + +S + L +++ + I D
Sbjct: 125 TCLYIYGNGIGDEGAKLISGMKQLTELSIGHNEIGDEGAKFISEMKQLTELSIFYNRIGD 184
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
+ ++ + L L++ +I D G ++ + L L L+
Sbjct: 185 EGAKYISEMKQLTDLDIRHNRIGDKGEKLISGMKKLKRLCLY 226
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 89/186 (47%), Gaps = 1/186 (0%)
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
++ + L L + ++G G + +S + L S+ +S I ++ L L L +L++
Sbjct: 22 ISEMKQLVALFVPTNRIGDEGTKLISEMKQLISLGISKNQIGAKGVKYLCKLKQLIALDI 81
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
+ +I D G ++ + LT L + +I G Y+ K L L I G G+ D G K
Sbjct: 82 NRNRIGDEGAKLISKMKQLTLLHVGDNQIGVKGVKYISEMKQLTCLYIYGNGIGDEGAKL 141
Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
I + LT L++ N + D+ + IS + L L++ +RI G +++ +K L L
Sbjct: 142 ISGMKQLTELSIGHN-EIGDEGAKFISEMKQLTELSIFYNRIGDEGAKYISEMKQLTDLD 200
Query: 476 LESCKV 481
+ ++
Sbjct: 201 IRHNRI 206
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 95/213 (44%), Gaps = 26/213 (12%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I D G + + + L SL +N I A+G+K L L+ LD+ R
Sbjct: 37 RIGDEGTKLISEMKQLISLGISKNQ-IGAKGVKYLCKLKQLIALDINR------------ 83
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
N I D K +S + L L + +++ G+ Y+ +++LT L +
Sbjct: 84 -------------NRIGDEGAKLISKMKQLTLLHVGDNQIGVKGVKYISEMKQLTCLYIY 130
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
G + +S + L L++ ++ D+G + S++ L L++ +N I DE ++
Sbjct: 131 GNGIGDEGAKLISGMKQLTELSIGHNEIGDEGAKFISEMKQLTELSIFYNRIGDEGAKYI 190
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
+ L L++ IGD+G ++G+ LK L
Sbjct: 191 SEMKQLTDLDIRHNRIGDKGEKLISGMKKLKRL 223
>gi|168703296|ref|ZP_02735573.1| hypothetical protein GobsU_27441 [Gemmata obscuriglobus UQM 2246]
Length = 635
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 116/248 (46%), Gaps = 24/248 (9%)
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
TD +++ + + ++ ++I+ VT +G+ +L L KL L ++ CPV + + L+A
Sbjct: 228 TDDELRVFTSIREVEHVRIANGDVTTAGLYHLPRLSKLKTLEIDSCPVDS--IAPLTACP 285
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
+L L + ++ G E+ + V+N D L+ LTNL L LD C I
Sbjct: 286 NLTELVIT----AEAGTERRA------VVN-------DTGTAGLEKLTNLRRLKLDWCEI 328
Query: 289 GDEGLVNLTGLCNLKCLEL---SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
G + L L L L+ LEL + + L L+GL LE + L I +L +
Sbjct: 329 GGQTLRRLAALHRLRSLELMLFWGQHISGTDLAELTGLLELEKLTLH--PIPPWALEYIG 386
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
L +L++L L D+ L LT L L L G +TD +LR ++LR+L I
Sbjct: 387 PLRTLRTLTLSLFGEGDSEFRHLAQLTNLCWLKLTGPAVTDCALGHLRTLRSLRTLHISE 446
Query: 406 GGLTDAGV 413
+T G
Sbjct: 447 SAVTATGA 454
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 111/254 (43%), Gaps = 39/254 (15%)
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
+DD F+ I ++ + + ++T L HL L+ L++L +DSC + + + LT
Sbjct: 228 TDDELRVFTSIREVEHVRIANGDVTTAGLYHLPRLSKLKTLEIDSCPV--DSIAPLTACP 285
Query: 301 NLKCLELSDTQ-------VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
NL L ++ V +G L LTNL + L + I +LR+LA L L+SL
Sbjct: 286 NLTELVITAEAGTERRAVVNDTGTAGLEKLTNLRRLKLDWCEIGGQTLRRLAALHRLRSL 345
Query: 354 NL---DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
L + I+ T LA LT L L L L I Y+ + LR+L + G D
Sbjct: 346 ELMLFWGQHISGTDLAELTGLLELEKLTLHP--IPPWALEYIGPLRTLRTLTLSLFGEGD 403
Query: 411 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 470
+ +H+ L++L L L+ +T L HL+ L++
Sbjct: 404 SEFRHLAQLTNLCWLKLT-------------------------GPAVTDCALGHLRTLRS 438
Query: 471 LRSLTLESCKVTAN 484
LR+L + VTA
Sbjct: 439 LRTLHISESAVTAT 452
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 110/257 (42%), Gaps = 28/257 (10%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
V ++ DVT +GL HL S L++L+ + C S + L NLT L ITA
Sbjct: 244 VRIANGDVTTAGLYHLPRLSKLKTLEIDSCPVDS---IAPLTACPNLTEL------VITA 294
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+ ++N G L+ L L L + WC I ++ L+ L
Sbjct: 295 EAGTERRAVVN------------DTGTAGLEKLTNLRRLKLDWCE-IGGQTLRRLAALHR 341
Query: 182 LKSLQISC---SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L+SL++ ++ + +A L GL +L L L P+ L+ + L +L L L+
Sbjct: 342 LRSLELMLFWGQHISGTDLAELTGLLELEKLTLH--PIPPWALEYIGPLRTLRTLTLSLF 399
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
D +++ +L L L +TD L HL+ L +L +L++ + G + L
Sbjct: 400 GEGDSEFRHLAQLTNLCWLKLTGPAVTDCALGHLRTLRSLRTLHISESAVTATGALTLAH 459
Query: 299 LCNLKCLELSDTQVGSS 315
+ +SDT V S
Sbjct: 460 QLPAAKI-ISDTVVAWS 475
>gi|428173790|gb|EKX42690.1| hypothetical protein GUITHDRAFT_73681, partial [Guillardia theta
CCMP2712]
Length = 439
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 106/401 (26%), Positives = 179/401 (44%), Gaps = 30/401 (7%)
Query: 105 LSNLTSLSFRR--NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
S L++L F + +NA+ F GL +L +L + G KGL L++L++
Sbjct: 38 FSGLSALQFLQLHHNALLNLPSNVFDGLSSLQQLYVHNNVLSTLGPNTFKGLASLQNLDL 97
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
+ N ++ +G ++L++L + +K+T+ +GL L L L +++
Sbjct: 98 SY-NQLSTLPPDSFNGSSSLQTLSLFSNKITNISSDAFRGLPGLKYLGLFDNQLSSLSEG 156
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
S L L L+L +++ FS + L+ L+L N+I+D L GL+ L++LN
Sbjct: 157 VFSGLSGLQILSLYNNRVTSLPSNAFSGLSVLQELDLNNNQISDISLSAFNGLSGLKTLN 216
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
L+S + GL L+ L+L ++ S + GL+ LE +++SF +
Sbjct: 217 LNSNQLSSLPSNAFFGLSALQQLQLDGNRISSISMDAFDGLSALEELHMSFNQLQTVLSS 276
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD------SGAAYLRN-- 394
GLS+LK L++ QI+ A LT LT L L G ++T G YL +
Sbjct: 277 NFNGLSALKLLDIQNNQISSISSGAFNGLTALTSLSLNGNKLTSIPAGVFDGLQYLESLI 336
Query: 395 ------------------FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436
F NL L + LT + LS L L LS N ++ +
Sbjct: 337 LSSNQLECISSNAFASLLFLNLEELYLSYNQLTSLPLGVFNGLSKLVTLTLSNN-HVKEL 395
Query: 437 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 477
+ +GL+ L LN+ ++ + S L L +L +TLE
Sbjct: 396 PAGVFNGLSSLKFLNLGHNELESLPLNLFDGLTSLEQVTLE 436
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 110/386 (28%), Positives = 166/386 (43%), Gaps = 37/386 (9%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK-----GLMK 156
GLS+L +L NN +++ F+GL L L L H L+NL GL
Sbjct: 14 FNGLSSLQTLELS-NNRLSSLSEGVFSGLSALQFLQLH-----HNALLNLPSNVFDGLSS 67
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L+ L + N ++ GL +L++L +S ++++ G L L+L +
Sbjct: 68 LQQLYVH-NNVLSTLGPNTFKGLASLQNLDLSYNQLSTLPPDSFNGSSSLQTLSLFSNKI 126
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
T D+ L L YL L QLS FS + L++L+L N +T GL+
Sbjct: 127 TNISSDAFRGLPGLKYLGLFDNQLSSLSEGVFSGLSGLQILSLYNNRVTSLPSNAFSGLS 186
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS---------SGLRHLS------ 321
L+ L+L++ I D L GL LK L L+ Q+ S S L+ L
Sbjct: 187 VLQELDLNNNQISDISLSAFNGLSGLKTLNLNSNQLSSLPSNAFFGLSALQQLQLDGNRI 246
Query: 322 ---------GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
GL+ LE +++SF + GLS+LK L++ QI+ A LT
Sbjct: 247 SSISMDAFDGLSALEELHMSFNQLQTVLSSNFNGLSALKLLDIQNNQISSISSGAFNGLT 306
Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
LT L L G ++T A + L SL + L L L L L + N
Sbjct: 307 ALTSLSLNGNKLTSIPAGVFDGLQYLESLILSSNQLECISSNAFASLLFLNLEELYLSYN 366
Query: 433 -LTDKTLELISGLTGLVSLNVSNSRI 457
LT L + +GL+ LV+L +SN+ +
Sbjct: 367 QLTSLPLGVFNGLSKLVTLTLSNNHV 392
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 158/333 (47%), Gaps = 6/333 (1%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
GL L++L + N ++ SGL+ L+ LQ+ + + + GL L L
Sbjct: 14 FNGLSSLQTLELS-NNRLSSLSEGVFSGLSALQFLQLHHNALLNLPSNVFDGLSSLQQLY 72
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
+ ++ ++ L SL L+L+ QLS + F+ SL+ L+L N+IT+
Sbjct: 73 VHNNVLSTLGPNTFKGLASLQNLDLSYNQLSTLPPDSFNGSSSLQTLSLFSNKITNISSD 132
Query: 271 HLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
+GL L+ L L + EG+ +GL L+ L L + +V S SGL+ L+
Sbjct: 133 AFRGLPGLKYLGLFDNQLSSLSEGV--FSGLSGLQILSLYNNRVTSLPSNAFSGLSVLQE 190
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
++L+ ISD SL GLS LK+LNL++ Q++ A L+ L L L G RI+
Sbjct: 191 LDLNNNQISDISLSAFNGLSGLKTLNLNSNQLSSLPSNAFFGLSALQQLQLDGNRISSIS 250
Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
L L + L + LS+L LL++ QN ++ + +GLT L
Sbjct: 251 MDAFDGLSALEELHMSFNQLQTVLSSNFNGLSALKLLDI-QNNQISSISSGAFNGLTALT 309
Query: 449 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
SL+++ +++TS L+ L SL L S ++
Sbjct: 310 SLSLNGNKLTSIPAGVFDGLQYLESLILSSNQL 342
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 95/352 (26%), Positives = 159/352 (45%), Gaps = 35/352 (9%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+SL ++DLS + ++ S+LQ+L F +I++ + RGL L L +
Sbjct: 90 ASLQNLDLSYNQLSTLPPDSFNGSSSLQTLSL-FSNKITNISSDAFRGLPGLKYLGLF-D 147
Query: 117 NAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N +++ F+GL L L L R T + GL L+ L++ N I+D +
Sbjct: 148 NQLSSLSEGVFSGLSGLQILSLYNNRVTSLPSNA--FSGLSVLQELDLN-NNQISDISLS 204
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+GL+ LK+L ++ ++++ GL L L L+G +++ +D+ L +L L+
Sbjct: 205 AFNGLSGLKTLNLNSNQLSSLPSNAFFGLSALQQLQLDGNRISSISMDAFDGLSALEELH 264
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD-------SCG 287
++ QL F+ + +LK+L++ N+I+ GLT L SL+L+ G
Sbjct: 265 MSFNQLQTVLSSNFNGLSALKLLDIQNNQISSISSGAFNGLTALTSLSLNGNKLTSIPAG 324
Query: 288 IGDEGLVNLTGLC--------------------NLKCLELSDTQVGSSGLRHLSGLTNLE 327
+ D GL L L NL+ L LS Q+ S L +GL+ L
Sbjct: 325 VFD-GLQYLESLILSSNQLECISSNAFASLLFLNLEELYLSYNQLTSLPLGVFNGLSKLV 383
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
++ LS + + GLSSLK LNL ++ L LT L + L
Sbjct: 384 TLTLSNNHVKELPAGVFNGLSSLKFLNLGHNELESLPLNLFDGLTSLEQVTL 435
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 99/341 (29%), Positives = 150/341 (43%), Gaps = 46/341 (13%)
Query: 15 VYSRCLTEVSLEAFR-----------DCALQDLCLGQYPGVND-KWMDVIASQGSSLLSV 62
++S +T +S +AFR D L L G + G++ + + + ++ +SL S
Sbjct: 121 LFSNKITNISSDAFRGLPGLKYLGLFDNQLSSLSEGVFSGLSGLQILSLYNNRVTSLPSN 180
Query: 63 DLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ 122
SG V LQ LD N QISD L GLS L +L+ N +++
Sbjct: 181 AFSGLSV-------------LQELDLN-NNQISDISLSAFNGLSGLKTLNLNSN-QLSSL 225
Query: 123 GMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AF GL L +L L+ R + I + GL LE L++ + N + +GL+
Sbjct: 226 PSNAFFGLSALQQLQLDGNRISSI--SMDAFDGLSALEELHMSF-NQLQTVLSSNFNGLS 282
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT---AACLDSLSALGSLFYLNLNR 237
LK L I ++++ GL LT L+L G +T A D L L SL L+
Sbjct: 283 ALKLLDIQNNQISSISSGAFNGLTALTSLSLNGNKLTSIPAGVFDGLQYLESLI---LSS 339
Query: 238 CQLSDDGCEKFSKIGSLKVLNL-----GFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
QL C + SL LNL +N++T L GL+ L +L L + + +
Sbjct: 340 NQLE---CISSNAFASLLFLNLEELYLSYNQLTSLPLGVFNGLSKLVTLTLSNNHVKELP 396
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
GL +LK L L ++ S L GLT+LE + L +
Sbjct: 397 AGVFNGLSSLKFLNLGHNELESLPLNLFDGLTSLEQVTLEW 437
>gi|71912406|gb|AAZ53235.1| InlA [Listeria monocytogenes]
Length = 800
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 124/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ NN
Sbjct: 100 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQ 153
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + L NL +L+L T + L GL L+ L+ N +TD +KPL+
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLAN 205
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
N QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 313 LAGLTALTSLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370
Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
LA L+++ L+ QI+D L L +LT +T L L T++ Y N
Sbjct: 371 NKVSDVSSLASLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428
Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
KN+ I ++D G D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 104/359 (28%), Positives = 158/359 (44%), Gaps = 96/359 (26%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
+GL NL+ L + QV + L+ L+ LT LE +++S +SD S+ LA L++L+SL
Sbjct: 183 SGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIAT 237
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
QI+D +T L LT+LD L + G L D G +
Sbjct: 238 NNQISD-----ITPLGILTNLD---------------------ELSLNGNQLKDIGT--L 269
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
L++LT L+L+ N L +SGLT L L + ++I+ ++ PL L +LT
Sbjct: 270 ASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|241724224|ref|XP_002413721.1| F-box/LRR-repeat protein, putative [Ixodes scapularis]
gi|215507537|gb|EEC17029.1| F-box/LRR-repeat protein, putative [Ixodes scapularis]
Length = 315
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 165/336 (49%), Gaps = 62/336 (18%)
Query: 69 VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
V+D GL +L NL SLD + C+ ++D GLEH+ +S+L L+ +T+Q M
Sbjct: 12 VSDLGLEYLSLRLKNLVSLDLSMCLSVTDAGLEHIAKISSLKKLTLLGCEDLTSQSMFHL 71
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS---GLTNLKS 184
A +L L I +CN I D+ + ++ GL +L +
Sbjct: 72 A-----------------------TARFRLNCLIISYCNQIEDTGIHMINRGQGLVSLTT 108
Query: 185 LQISCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGS----LFYLNLNRCQ 239
L ++ +TD G++ + + L+ LT LN+ C + D +S + + L ++N+ C
Sbjct: 109 LNVNACPITDVGLSVVAEKLRDLTALNISECEYVSK--DGISVVAANLRKLRFINMRLCT 166
Query: 240 -LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
L++ + +++ SL+V+NL G +IT KG+ + S G G ++
Sbjct: 167 GLTNISLKHLARMSSLEVINLKGCTKITG------KGMAFMAS------GEGQSSVLE-- 212
Query: 298 GLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNL 355
L++S T +G +GLR+++ G+ L S++L ISD L ++A L +L +L +
Sbjct: 213 -------LDVSFTSIGDTGLRYIAQGMQKLRSLSLCGCLISDKGLTRIARNLHALNTLKI 265
Query: 356 D-ARQITDTGLAALT-SLTGLTHLDLFG-ARITDSG 388
+ITD G+ + +L L +DL G +RIT +G
Sbjct: 266 SRCSRITDNGIKVVACNLKRLRQIDLKGCSRITSAG 301
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 128/243 (52%), Gaps = 18/243 (7%)
Query: 275 LTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLS-GLTNLESINL 331
L NL SL+L C + D GL ++ + +LK L L + + S + HL+ L + +
Sbjct: 24 LKNLVSLDLSMCLSVTDAGLEHIAKISSLKKLTLLGCEDLTSQSMFHLATARFRLNCLII 83
Query: 332 SFTG-ISDGSLRKL---AGLSSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFGARIT- 385
S+ I D + + GL SL +LN++A ITD GL+ + L LT L++
Sbjct: 84 SYCNQIEDTGIHMINRGQGLVSLTTLNVNACPITDVGLSVVAEKLRDLTALNISECEYVS 143
Query: 386 -DSGAAYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
D + N + LR ++ +C G LT+ +KH+ +SSL ++NL +T K + ++
Sbjct: 144 KDGISVVAANLRKLRFINMRLCTG-LTNISLKHLARMSSLEVINLKGCTKITGKGMAFMA 202
Query: 443 ---GLTGLVSLNVSNSRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 498
G + ++ L+VS + I GLR++ + ++ LRSL+L C ++ + R+ +R+L L
Sbjct: 203 SGEGQSSVLELDVSFTSIGDTGLRYIAQGMQKLRSLSLCGCLISDKGLTRI-ARNLHALN 261
Query: 499 SFR 501
+ +
Sbjct: 262 TLK 264
Score = 45.1 bits (105), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 73/131 (55%), Gaps = 7/131 (5%)
Query: 20 LTEVSLEAF-RDCALQDLCLGQYPGVNDKWMDVIAS-QG-SSLLSVDLSGSDVTDSGLIH 76
LT +SL+ R +L+ + L + K M +AS +G SS+L +D+S + + D+GL +
Sbjct: 168 LTNISLKHLARMSSLEVINLKGCTKITGKGMAFMASGEGQSSVLELDVSFTSIGDTGLRY 227
Query: 77 L-KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFA-GLINL 133
+ + L+SL C+ ISD GL + R L L +L R + IT G+K A L L
Sbjct: 228 IAQGMQKLRSLSLCGCL-ISDKGLTRIARNLHALNTLKISRCSRITDNGIKVVACNLKRL 286
Query: 134 VKLDLERCTRI 144
++DL+ C+RI
Sbjct: 287 RQIDLKGCSRI 297
>gi|56797879|emb|CAH04901.1| internalin A [Listeria monocytogenes]
Length = 483
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 90 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 143
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 144 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 195
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 196 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 248
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 249 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 302
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 303 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 360
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 361 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 418
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 419 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 451
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 84 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 136
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 137 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 191
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 192 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 249
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 250 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 300
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 301 -NISPLAGLTALT 312
>gi|290988772|ref|XP_002677066.1| predicted protein [Naegleria gruberi]
gi|284090672|gb|EFC44322.1| predicted protein [Naegleria gruberi]
Length = 289
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 120/241 (49%), Gaps = 1/241 (0%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N + D+ L +T L +L+I + + D+ + + +++LT L+LE + S+S
Sbjct: 44 NILNDNWFNMLGRMTQLTTLEIGNNLIDDNMVKLISEMKQLTGLDLEINQIFNEGAKSIS 103
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L +L YLN+ ++D+G E S++ +L L + IT + + L NL LN+
Sbjct: 104 ELRNLTYLNIGNNPINDEGIESISQLDNLTDLTVSSLRITSKSAKFISKLNNLTLLNIAY 163
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKL 344
IGDEG ++ + +LK L++S + G + +S L L + +S I D R +
Sbjct: 164 NNIGDEGAKFISEIKSLKILDISLNGISPIGAKSISELDQLTVLYISQNFSIGDEGARMI 223
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
+ + L L + I + G +++ + LTHLD+ I G + +R+ K+L L I
Sbjct: 224 SEMKQLNELYIQDCFIGNAGAISISRMDKLTHLDISENEIQIEGESVIRDMKHLSYLSIE 283
Query: 405 G 405
G
Sbjct: 284 G 284
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 109/220 (49%)
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
N + D L +T L +L + + I D + ++ + L L+L Q+ + G + +S
Sbjct: 44 NILNDNWFNMLGRMTQLTTLEIGNNLIDDNMVKLISEMKQLTGLDLEINQIFNEGAKSIS 103
Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
L NL +N+ I+D + ++ L +L L + + +IT ++ L LT L++
Sbjct: 104 ELRNLTYLNIGNNPINDEGIESISQLDNLTDLTVSSLRITSKSAKFISKLNNLTLLNIAY 163
Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
I D GA ++ K+L+ L+I G++ G K I +L LT+L +SQN ++ D+ +I
Sbjct: 164 NNIGDEGAKFISEIKSLKILDISLNGISPIGAKSISELDQLTVLYISQNFSIGDEGARMI 223
Query: 442 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
S + L L + + I +AG + + L L + ++
Sbjct: 224 SEMKQLNELYIQDCFIGNAGAISISRMDKLTHLDISENEI 263
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 17/284 (5%)
Query: 163 KWCNCITDSDMKPLSGLTN--------------LKSLQISCSKVTDSGIAYLKGLQKLTL 208
+W N I D LS + N S+ + + + D+ L + +LT
Sbjct: 5 QWLNVIRDR--SELSMMANNHLVNQVNNEFLDCFVSITFARNILNDNWFNMLGRMTQLTT 62
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L + + + +S + L L+L Q+ ++G + S++ +L LN+G N I DE
Sbjct: 63 LEIGNNLIDDNMVKLISEMKQLTGLDLEINQIFNEGAKSISELRNLTYLNIGNNPINDEG 122
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
+ + L NL L + S I + ++ L NL L ++ +G G + +S + +L+
Sbjct: 123 IESISQLDNLTDLTVSSLRITSKSAKFISKLNNLTLLNIAYNNIGDEGAKFISEIKSLKI 182
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDS 387
+++S GIS + ++ L L L + I D G ++ + L L + I ++
Sbjct: 183 LDISLNGISPIGAKSISELDQLTVLYISQNFSIGDEGARMISEMKQLNELYIQDCFIGNA 242
Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
GA + L L+I + G I+D+ L+ L++ C
Sbjct: 243 GAISISRMDKLTHLDISENEIQIEGESVIRDMKHLSYLSIEGQC 286
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 135/289 (46%), Gaps = 17/289 (5%)
Query: 44 VNDKWMDVIASQGS-SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
V +W++VI + S+++ + + V + L DC S+ F I ++D L
Sbjct: 2 VTKQWLNVIRDRSELSMMANNHLVNQVNNEFL----DC--FVSITFARNI-LNDNWFNML 54
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
++ LT+L NN I +K + + L LDLE + G ++ L L LNI
Sbjct: 55 GRMTQLTTLEIG-NNLIDDNMVKLISEMKQLTGLDLEINQIFNEGAKSISELRNLTYLNI 113
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
N I D ++ +S L NL L +S ++T ++ L LTLLN+ +
Sbjct: 114 G-NNPINDEGIESISQLDNLTDLTVSSLRITSKSAKFISKLNNLTLLNIAYNNIGDEGAK 172
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESL 281
+S + SL L+++ +S G + S++ L VL + N I DE + + L L
Sbjct: 173 FISEIKSLKILDISLNGISPIGAKSISELDQLTVLYISQNFSIGDEGARMISEMKQLNEL 232
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG------LRHLSGLT 324
+ C IG+ G ++++ + L L++S+ ++ G ++HLS L+
Sbjct: 233 YIQDCFIGNAGAISISRMDKLTHLDISENEIQIEGESVIRDMKHLSYLS 281
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 357 ARQI-TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
AR I D L +T LT L++ I D+ + K L L++ + + G K
Sbjct: 42 ARNILNDNWFNMLGRMTQLTTLEIGNNLIDDNMVKLISEMKQLTGLDLEINQIFNEGAKS 101
Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
I +L +LT LN+ N + D+ +E IS L L L VS+ RITS + + L NL L
Sbjct: 102 ISELRNLTYLNIGNNP-INDEGIESISQLDNLTDLTVSSLRITSKSAKFISKLNNLTLLN 160
Query: 476 L 476
+
Sbjct: 161 I 161
>gi|85679224|gb|ABC72028.1| InlA [Listeria monocytogenes]
Length = 794
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 203 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 255
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 256 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 309
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 310 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 367
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 368 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVKYKV 425
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 426 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 458
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 102/359 (28%), Positives = 155/359 (43%), Gaps = 96/359 (26%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 53 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 97
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 98 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 127
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 128 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 181
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
+GL NL+ L + QV + L+ L+ LT LE +++S +SD S+ LA L++L+SL
Sbjct: 182 SGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIAT 236
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
QI+D + L LT L L L G ++ D G L + NL L++ I
Sbjct: 237 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANN--------QI 284
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
+L+ L SGLT L L + ++I+ ++ PL L +LT
Sbjct: 285 SNLAPL-------------------SGLTKLTELKLGANQIS-----NISPLAGLTALT 319
>gi|290982306|ref|XP_002673871.1| LRR_RI domain-containing protein [Naegleria gruberi]
gi|284087458|gb|EFC41127.1| LRR_RI domain-containing protein [Naegleria gruberi]
Length = 529
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 123/445 (27%), Positives = 206/445 (46%), Gaps = 66/445 (14%)
Query: 58 SLLSVDLSGSDVTDSG---LIHLKDC------SN------------------LQSLDFNF 90
+L+ +D+ GSD+ DSG L LK+ SN L +LD +F
Sbjct: 104 NLIHLDIYGSDIEDSGVACLCKLKELKILNIGSNKLTSKGRGIEMISKFMKCLTNLDISF 163
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
+ + G++ L+ L LT L+ + I A G++ + L+KL+ I G +N
Sbjct: 164 N-SLGNSGMKQLK-LDKLTDLNVSYCD-IDATGIQFIRNMTCLIKLN------ISGNNIN 214
Query: 151 LKG------LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
KG L L+ L+I C+ + K +S + NLK L IS +++ + G + L
Sbjct: 215 CKGALLLSNLKNLQELDIASA-CLKEEGAKHISRMDNLKFLSISHNQILNGGAKAISSLS 273
Query: 205 KLTLLNLEGCPVTAACLDSLSA-LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
KL +L++ C + L +S L +L +++ DG + + +LKVL+
Sbjct: 274 KLEILHISNCDIGCEGLQYISKNLKNLTEIDIGGNHFGMDGVIVIASMNNLKVLS----- 328
Query: 264 ITDECL-----VHLKGLTNLESL----NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
I + CL +L + NL L N+D IG+ ++ L NL L ++ +
Sbjct: 329 IAESCLGLLGVQYLSKMENLTYLNISDNIDDIFIGE----SINDLQNLTTLLYTNNSLSM 384
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKL-AGLSSLKSLNLDARQITDTGLAALT-SLT 372
+S LT L ++N+ T ISD + L + L L +L D IT G+ ++ S+
Sbjct: 385 DEAITISSLTQLTTLNIESTEISDVHIEILCSSLHHLINLYADTNFITSWGVKLISESMI 444
Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC- 431
L L L G RI D G Y+ + ++LR L +C + D GV+ + + + L L +C
Sbjct: 445 DLESLYLSGNRIGDEGLTYICSLQHLRILGVCNCEIGDRGVQVLVNCAPKKLRELLIDCN 504
Query: 432 -NLTDKTLELISGLTGLVSLNVSNS 455
N+T K +LI + L S+ + N+
Sbjct: 505 ENITSKGCKLIYSIPQLNSIYLENN 529
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 107/209 (51%), Gaps = 13/209 (6%)
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL------RHLSGLTNL 326
K + NL L++ I D G+ L L LK L + ++ S G + + LTNL
Sbjct: 100 KLMPNLIHLDIYGSDIEDSGVACLCKLKELKILNIGSNKLTSKGRGIEMISKFMKCLTNL 159
Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+ +SF + + +++L L L LN+ I TG+ + ++T L L++ G I
Sbjct: 160 D---ISFNSLGNSGMKQLK-LDKLTDLNVSYCDIDATGIQFIRNMTCLIKLNISGNNINC 215
Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 446
GA L N KNL+ L+I L + G KHI + +L L++S N + + + IS L+
Sbjct: 216 KGALLLSNLKNLQELDIASACLKEEGAKHISRMDNLKFLSISHN-QILNGGAKAISSLSK 274
Query: 447 LVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
L L++SN I GL+++ KNL++LT
Sbjct: 275 LEILHISNCDIGCEGLQYIS--KNLKNLT 301
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 153/344 (44%), Gaps = 46/344 (13%)
Query: 16 YSRCLT--EVSLEAFRDCALQDLCLGQYPGVNDKWMDVIAS------QGSSLLSVDLSGS 67
+ +CLT ++S + + ++ L L + +N + D+ A+ + L+ +++SG+
Sbjct: 152 FMKCLTNLDISFNSLGNSGMKQLKLDKLTDLNVSYCDIDATGIQFIRNMTCLIKLNISGN 211
Query: 68 DVTDSGLIHLKDCSNLQSLDF-NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++ G + L + NLQ LD + C++ + G +H+ + NL LS N + G KA
Sbjct: 212 NINCKGALLLSNLKNLQELDIASACLK--EEGAKHISRMDNLKFLSISHNQILNG-GAKA 268
Query: 127 FAGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+ L L L + C GL + K L L ++I N + ++ + NLK L
Sbjct: 269 ISSLSKLEILHISNCDIGCEGLQYISKNLKNLTEIDIGG-NHFGMDGVIVIASMNNLKVL 327
Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGC---PVTAACLDSLSALGSLFYLNLNRCQLSD 242
I+ S + G+ YL ++ LT LN+ ++ L L +L Y N LS
Sbjct: 328 SIAESCLGLLGVQYLSKMENLTYLNISDNIDDIFIGESINDLQNLTTLLYTN---NSLSM 384
Query: 243 DGCEKFSKIGSLKVLNLGFNEITD-------ECLVHL-------------------KGLT 276
D S + L LN+ EI+D L HL + +
Sbjct: 385 DEAITISSLTQLTTLNIESTEISDVHIEILCSSLHHLINLYADTNFITSWGVKLISESMI 444
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
+LESL L IGDEGL + L +L+ L + + ++G G++ L
Sbjct: 445 DLESLYLSGNRIGDEGLTYICSLQHLRILGVCNCEIGDRGVQVL 488
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 18/183 (9%)
Query: 319 HLSGLTNLESINLSFT-GISDG----SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
H+ GLT SF+ ISD S+ KL + +L L++ I D+G+A L L
Sbjct: 77 HIHGLT------FSFSKAISDKTNLISIEKL--MPNLIHLDIYGSDIEDSGVACLCKLKE 128
Query: 374 LTHLDLFGARITDSG---AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
L L++ ++T G + K L +L+I L ++G+K +K L LT LN+S
Sbjct: 129 LKILNIGSNKLTSKGRGIEMISKFMKCLTNLDISFNSLGNSGMKQLK-LDKLTDLNVSY- 186
Query: 431 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 490
C++ ++ I +T L+ LN+S + I G L LKNL+ L + S + K +
Sbjct: 187 CDIDATGIQFIRNMTCLIKLNISGNNINCKGALLLSNLKNLQELDIASACLKEEGAKHIS 246
Query: 491 SRD 493
D
Sbjct: 247 RMD 249
Score = 45.1 bits (105), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 86/172 (50%), Gaps = 5/172 (2%)
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG--LAALTSLTG-LTHLDL 379
+ NL +++ + I D + L L LK LN+ + ++T G + ++ LT+LD+
Sbjct: 102 MPNLIHLDIYGSDIEDSGVACLCKLKELKILNIGSNKLTSKGRGIEMISKFMKCLTNLDI 161
Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
+ +SG L+ L L + + G++ I++++ L LN+S N N+ K
Sbjct: 162 SFNSLGNSGMKQLK-LDKLTDLNVSYCDIDATGIQFIRNMTCLIKLNISGN-NINCKGAL 219
Query: 440 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 491
L+S L L L+++++ + G +H+ + NL+ L++ ++ K + S
Sbjct: 220 LLSNLKNLQELDIASACLKEEGAKHISRMDNLKFLSISHNQILNGGAKAISS 271
>gi|421898414|ref|ZP_16328780.1| lrr-gala family type III effector protein (gala 2) [Ralstonia
solanacearum MolK2]
gi|206589620|emb|CAQ36581.1| lrr-gala family type III effector protein (gala 2) [Ralstonia
solanacearum MolK2]
Length = 1051
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 108/376 (28%), Positives = 171/376 (45%), Gaps = 7/376 (1%)
Query: 58 SLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
S+ +DLSG S V+++GL L L+SLD + +I D ++ L ++LTSL+
Sbjct: 648 SVRHLDLSGCTGSAVSEAGLAVLARLP-LESLDLS-GTRIGDREVQALASSTSLTSLNLS 705
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N I G +A L L++ G+ L L SL ++ I ++ +
Sbjct: 706 -GNRIGNAGARALGRNTVLTALNVSANPIGDAGVQALADSQSLTSLELRGIG-IGEAGIA 763
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L+ T L+SL IS + +++ A L Q L L C +T L+ + SL L
Sbjct: 764 ALASNTVLRSLDISSNDLSEQSAAELARNQTLASLKANACGLTNGMAQQLARIRSLRTLE 823
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+ + D G ++ SL+ LNL N IT + L L+ L SL++ G GD G +
Sbjct: 824 VGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLRPLELSRTLTSLDVSGIGCGDRGAL 883
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
L+ L L+L +GS+G + L+ L S++L I + + LA L SLN
Sbjct: 884 LLSKNRALTSLKLGFNGIGSAGAQGLAANRTLISLDLRGNTIDVDAAKALANTGCLTSLN 943
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
+ ++ D +AL LT LD+ R++ A L L SL I + G +
Sbjct: 944 VSDCKLDDEAASALAESLTLTSLDVSVNRLSGQAARALAGNATLTSLNISHNHIGPDGAQ 1003
Query: 415 HIKDLSSLTLLNLSQN 430
+ + SLT L+ N
Sbjct: 1004 ALAESPSLTFLDARAN 1019
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 98/351 (27%), Positives = 155/351 (44%), Gaps = 4/351 (1%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ D+ + +AS +SL S++LSG+ + ++G L + L +L+ + I D G++ L
Sbjct: 685 IGDREVQALASS-TSLTSLNLSGNRIGNAGARALGRNTVLTALNVS-ANPIGDAGVQALA 742
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
+LTSL R I G+ A A L LD+ L L SL
Sbjct: 743 DSQSLTSLELR-GIGIGEAGIAALASNTVLRSLDISSNDLSEQSAAELARNQTLASLKAN 801
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
C +T+ + L+ + +L++L++ + + D+G+ + L LNL P+T L
Sbjct: 802 ACG-LTNGMAQQLARIRSLRTLEVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLRP 860
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L +L L+++ D G SK +L L LGFN I L L SL+L
Sbjct: 861 LELSRTLTSLDVSGIGCGDRGALLLSKNRALTSLKLGFNGIGSAGAQGLAANRTLISLDL 920
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
I + L L L +SD ++ L+ L S+++S +S + R
Sbjct: 921 RGNTIDVDAAKALANTGCLTSLNVSDCKLDDEAASALAESLTLTSLDVSVNRLSGQAARA 980
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
LAG ++L SLN+ I G AL LT LD I ++GA L N
Sbjct: 981 LAGNATLTSLNISHNHIGPDGAQALAESPSLTFLDARANGIGEAGARALEN 1031
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 104/198 (52%), Gaps = 4/198 (2%)
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
LESL+L IGD + L +L L LS ++G++G R L T L ++N+S I
Sbjct: 675 LESLDLSGTRIGDREVQALASSTSLTSLNLSGNRIGNAGARALGRNTVLTALNVSANPIG 734
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
D ++ LA SL SL L I + G+AAL S T L LD+ +++ AA L +
Sbjct: 735 DAGVQALADSQSLTSLELRGIGIGEAGIAALASNTVLRSLDISSNDLSEQSAAELARNQT 794
Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
L SL+ GLT+ + + + SL L + N ++ D + I+ L +LN+S++ I
Sbjct: 795 LASLKANACGLTNGMAQQLARIRSLRTLEVGSN-SIGDTGVLAIARNASLRTLNLSHNPI 853
Query: 458 TSAGLRHLKPLKNLRSLT 475
T GLR PL+ R+LT
Sbjct: 854 TLQGLR---PLELSRTLT 868
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 131/291 (45%), Gaps = 16/291 (5%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G+ + + +AS + L S+D+S +D+++ L L SL N C +++G + L
Sbjct: 756 GIGEAGIAALASN-TVLRSLDISSNDLSEQSAAELARNQTLASLKANAC-GLTNGMAQQL 813
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE---- 158
+ +L +L +N+I G+ A A +L L+L + L+GL LE
Sbjct: 814 ARIRSLRTLEVG-SNSIGDTGVLAIARNASLRTLNLSHNP------ITLQGLRPLELSRT 866
Query: 159 --SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
SL++ C D LS L SL++ + + +G L + L L+L G +
Sbjct: 867 LTSLDVSGIGC-GDRGALLLSKNRALTSLKLGFNGIGSAGAQGLAANRTLISLDLRGNTI 925
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
+L+ G L LN++ C+L D+ ++ +L L++ N ++ + L G
Sbjct: 926 DVDAAKALANTGCLTSLNVSDCKLDDEAASALAESLTLTSLDVSVNRLSGQAARALAGNA 985
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
L SLN+ IG +G L +L L+ +G +G R L T ++
Sbjct: 986 TLTSLNISHNHIGPDGAQALAESPSLTFLDARANGIGEAGARALENNTRMQ 1036
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 85/180 (47%), Gaps = 19/180 (10%)
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
E + +L GL LESLN+ IGD+G L +L+ L ++ +G++G R L+ L
Sbjct: 145 EAIAYLAGLP-LESLNVAGADIGDDGARLLAANPSLRALNAANGGIGAAGARALAESPVL 203
Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL------- 379
S++L+ GI D R LAG SL SL + +TD G AL LT LDL
Sbjct: 204 ASLDLTRNGIGDEGARALAGSRSLTSLAVLNCLVTDVGARALAGNGTLTALDLGNLITET 263
Query: 380 -----------FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
IT GA L ++L SL I G D GV+ + +LT LN++
Sbjct: 264 GNELEQAGYDRTANEITARGAWALAQNRSLTSLSIQGNLCGDGGVQALARNRTLTSLNVA 323
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 105/258 (40%), Gaps = 13/258 (5%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQK-LTLLNLEGCPVTAACLDSLSALG--SLFYLNLNR 237
NL SLQ+ + + LK L L L+L C A ++++ L L LN+
Sbjct: 107 NLTSLQLEGNFT----LQDLKALPATLRHLDLSACTGGAKSFEAIAYLAGLPLESLNVAG 162
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+ DDG + SL+ LN I L L SL+L GIGDEG L
Sbjct: 163 ADIGDDGARLLAANPSLRALNAANGGIGAAGARALAESPVLASLDLTRNGIGDEGARALA 222
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
G +L L + + V G R L+G L +++L G+ + AG + A
Sbjct: 223 GSRSLTSLAVLNCLVTDVGARALAGNGTLTALDLGNLITETGNELEQAGY------DRTA 276
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
+IT G AL LT L + G D G L + L SL + +T A +
Sbjct: 277 NEITARGAWALAQNRSLTSLSIQGNLCGDGGVQALARNRTLTSLNVAYTDMTPASATELA 336
Query: 418 DLSSLTLLNLSQNCNLTD 435
LT L++ N L D
Sbjct: 337 RNPVLTSLSVRWNYGLGD 354
>gi|149242645|pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 185/393 (47%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 63 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 116
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ LN + N +TD +KPL
Sbjct: 117 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLN--FGNQVTD--LKPL 168
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 169 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 221
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 222 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 275
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 276 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 333
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 334 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 391
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 392 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 424
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 57 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 109
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ LN Q+TD
Sbjct: 110 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNF-GNQVTD 164
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 165 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 222
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 223 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 273
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 274 -NISPLAGLTALT 285
>gi|428298451|ref|YP_007136757.1| small GTP-binding protein [Calothrix sp. PCC 6303]
gi|428234995|gb|AFZ00785.1| small GTP-binding protein [Calothrix sp. PCC 6303]
Length = 1408
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 138/488 (28%), Positives = 222/488 (45%), Gaps = 85/488 (17%)
Query: 50 DVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLD--FNFCIQISDGGLEHLRGLSN 107
+VIA + ++L + L + +T+ + + +NL LD +N +IS+ L L N
Sbjct: 235 EVIA-KLTNLRKLYLRNNQITEIPEV-IAKLTNLTQLDLSYNQITKISEA----LAKLIN 288
Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWC 165
LT + NN IT + A A LINL +LDL + T+I L L L +L I +
Sbjct: 289 LTQIILH-NNKIT-EIPDALAKLINLTQLDLSYNQITKIPEALAKLTNLTQL----ILYS 342
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVT--DSGIAYLKGLQKLTLLN--LEGCPVTAACL 221
N IT+ + ++ LTNL L +S +++T +A L L +L L + + P A L
Sbjct: 343 NQITEIP-EVIAKLTNLTQLDLSYNQITKIPEALAKLTNLTQLILYSNRISEIPEALAKL 401
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD------------ECL 269
+L+ + L+ NR + E +K+ +L L+L +N+IT + +
Sbjct: 402 INLTQI----ILSYNRI---SEIPEALAKLTNLTQLDLSYNQITKIPEALAKLINLTQII 454
Query: 270 VH----------LKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGL 317
+H L LTNL L L I + E L LT NL L LSD Q+
Sbjct: 455 LHSNKITEIPEALAKLTNLRQLYLSYNRITEIPEALAKLT---NLTQLNLSDNQIIKIP- 510
Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA----------- 366
+ L+ L+NL ++L+ I++ LA L++L L L +IT+ A
Sbjct: 511 KALAKLSNLTQLDLNRNKITEIP-EALAKLTNLTQLYLRNNRITEIPEALAKLTNLTQLD 569
Query: 367 ------------ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
A+T LT LT L+L ++IT+ + NL L + + + +
Sbjct: 570 LGTNYNISEIPEAITKLTNLTQLNLTSSQITEIPEV-IAKLTNLTQLNLTSNQIAEIP-E 627
Query: 415 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
I L++LT L L+ N + E I+ LT L LN+++++IT + L NL L
Sbjct: 628 AIAKLTNLTQLILT--SNQITEIPEAIAKLTNLTQLNLTSNQITKIP-EAIAKLTNLTQL 684
Query: 475 TLESCKVT 482
L ++T
Sbjct: 685 ILSYNQIT 692
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 138/451 (30%), Positives = 207/451 (45%), Gaps = 64/451 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
+ + SNL L FN IS E + LSNL L +N IT + +A A L NL +L
Sbjct: 122 IANLSNLTQLYFN-SNHISKIP-ELIAKLSNLRELHVS-SNKIT-EIPEAIAKLSNLREL 177
Query: 137 DL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
+ + T I + NL L +L N IT+ + ++ L NL+ LQ+S +K+T+
Sbjct: 178 HVSSNQITEIPEAIANLSNLRELHV----SSNQITEIP-EAIAKLINLRELQVSSNKITE 232
Query: 195 --SGIAYLKGLQKLTLLN--LEGCPVTAACLDSLSALGSLFY-------------LNLNR 237
IA L L+KL L N + P A L +L+ L L Y +NL +
Sbjct: 233 IPEVIAKLTNLRKLYLRNNQITEIPEVIAKLTNLTQLD-LSYNQITKISEALAKLINLTQ 291
Query: 238 CQLSDDGC----EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
L ++ + +K+ +L L+L +N+IT + L LTNL L L S I +
Sbjct: 292 IILHNNKITEIPDALAKLINLTQLDLSYNQIT-KIPEALAKLTNLTQLILYSNQITEIPE 350
Query: 294 VNLTGLCNLKCLELSDTQVG--SSGLRHLSGLT--------------------NLESINL 331
V + L NL L+LS Q+ L L+ LT NL I L
Sbjct: 351 V-IAKLTNLTQLDLSYNQITKIPEALAKLTNLTQLILYSNRISEIPEALAKLINLTQIIL 409
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
S+ IS+ LA L++L L+L QIT AL L LT + L +IT+ A
Sbjct: 410 SYNRISEIP-EALAKLTNLTQLDLSYNQITKIP-EALAKLINLTQIILHSNKITEIPEA- 466
Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
L NLR L + +T+ + + L++LT LNLS N + K + ++ L+ L L+
Sbjct: 467 LAKLTNLRQLYLSYNRITEIP-EALAKLTNLTQLNLSDNQII--KIPKALAKLSNLTQLD 523
Query: 452 VSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
++ ++IT L L NL L L + ++T
Sbjct: 524 LNRNKITEIP-EALAKLTNLTQLYLRNNRIT 553
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 140/305 (45%), Gaps = 47/305 (15%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER--CTR 143
L +N +I + L L+NLT L+ N I KA A L NL +LDL R T
Sbjct: 478 LSYNRITEIPEA----LAKLTNLTQLNLSDNQIIKIP--KALAKLSNLTQLDLNRNKITE 531
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
I L L L +L N N IT+ + L+ LTNL L D G Y
Sbjct: 532 IPEALAKLTNLTQLYLRN----NRITEIP-EALAKLTNLTQL--------DLGTNY---- 574
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
N+ P ++++ L +L LNL Q+++ E +K+ +L LNL N+
Sbjct: 575 ------NISEIP------EAITKLTNLTQLNLTSSQITE-IPEVIAKLTNLTQLNLTSNQ 621
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
I E + LTNL L L S I + E + LT L L T++ + ++
Sbjct: 622 IA-EIPEAIAKLTNLTQLILTSNQITEIPEAIAKLTNLTQLNLTSNQITKIPEA----IA 676
Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
LTNL + LS+ I++ +A L++L L L + QIT+ A+T LT LT LDL
Sbjct: 677 KLTNLTQLILSYNQITEIP-EAIAKLTNLTQLILTSNQITEIP-DAITKLTNLTQLDLSY 734
Query: 382 ARITD 386
RI++
Sbjct: 735 NRISE 739
>gi|290984930|ref|XP_002675179.1| predicted protein [Naegleria gruberi]
gi|284088774|gb|EFC42435.1| predicted protein [Naegleria gruberi]
Length = 330
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 142/314 (45%), Gaps = 32/314 (10%)
Query: 95 SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154
SDG + + +LT L R NN I +G ++ ++ L +L C I G + KG
Sbjct: 43 SDGNFQVFEMMKHLTHLDIR-NNGIGYEGAQSIGKVMQLTRL----C--IAGNNIGEKG- 94
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
K +S LT L +L +S +++ D G ++ L +LT LN+ G
Sbjct: 95 ------------------AKSISQLTQLTTLDVSFNQLCDYGTKFISQLSRLTDLNIRGN 136
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI---TDECLVH 271
+T LS L L +LN++ + +G + + + L L++ +N I + +
Sbjct: 137 RITDKGAIFLSDLKELRFLNISSNTILLEGIKSLTNLKQLTQLDISYNNILPSYAQTISE 196
Query: 272 LKGLTNLESLNLDSCGIGDE--GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
+ LTNL +L+ + G G + G+ + + NLK L + ++ + L +
Sbjct: 197 MDQLTNL-NLSYNDYGWGSDSNGVRYICEMKNLKTLTFGGICIRQYIFNYIKEMKQLACL 255
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
N+ + I S + ++ ++ L L++ +I D G ++ + LT L++ G RI G
Sbjct: 256 NIRSSYIGSSSAKLISSMNQLTELDISYNEIGDVGAKHISEMDQLTSLNVEGCRINSEGT 315
Query: 390 AYLRNFKNLRSLEI 403
YL+ K L L I
Sbjct: 316 EYLKQMKQLTYLNI 329
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 134/289 (46%), Gaps = 5/289 (1%)
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
+D + + + +L L I + + G + + +LT L + G + S+S L
Sbjct: 43 SDGNFQVFEMMKHLTHLDIRNNGIGYEGAQSIGKVMQLTRLCIAGNNIGEKGAKSISQLT 102
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
L L+++ QL D G + S++ L LN+ N ITD+ + L L L LN+ S I
Sbjct: 103 QLTTLDVSFNQLCDYGTKFISQLSRLTDLNIRGNRITDKGAIFLSDLKELRFLNISSNTI 162
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS----LRKL 344
EG+ +LT L L L++S + S + +S + L ++NLS+ GS +R +
Sbjct: 163 LLEGIKSLTNLKQLTQLDISYNNILPSYAQTISEMDQLTNLNLSYNDYGWGSDSNGVRYI 222
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
+ +LK+L I + + L L++ + I S A + + L L+I
Sbjct: 223 CEMKNLKTLTFGGICIRQYIFNYIKEMKQLACLNIRSSYIGSSSAKLISSMNQLTELDIS 282
Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
+ D G KHI ++ LT LN+ + C + + E + + L LN+S
Sbjct: 283 YNEIGDVGAKHISEMDQLTSLNV-EGCRINSEGTEYLKQMKQLTYLNIS 330
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/313 (21%), Positives = 139/313 (44%), Gaps = 22/313 (7%)
Query: 179 LTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L N+ ++S + +D + ++ LT L++ + S+ + L L +
Sbjct: 28 LQNIVKFRVSIDRDESDGNFQVFEMMKHLTHLDIRNNGIGYEGAQSIGKVMQLTRLCIAG 87
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+ + G + S++ L L++ FN++ D + L+ L LN+ I D+G + L+
Sbjct: 88 NNIGEKGAKSISQLTQLTTLDVSFNQLCDYGTKFISQLSRLTDLNIRGNRITDKGAIFLS 147
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
L L+ L +S + G++ L+ L L +++S+ I + ++ + L +LNL
Sbjct: 148 DLKELRFLNISSNTILLEGIKSLTNLKQLTQLDISYNNILPSYAQTISEMDQLTNLNLSY 207
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
+G +G Y+ KNL++L G + +IK
Sbjct: 208 ND--------------------YGWGSDSNGVRYICEMKNLKTLTFGGICIRQYIFNYIK 247
Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 477
++ L LN+ ++ + + +LIS + L L++S + I G +H+ + L SL +E
Sbjct: 248 EMKQLACLNI-RSSYIGSSSAKLISSMNQLTELDISYNEIGDVGAKHISEMDQLTSLNVE 306
Query: 478 SCKVTANDIKRLQ 490
C++ + + L+
Sbjct: 307 GCRINSEGTEYLK 319
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 94/209 (44%), Gaps = 29/209 (13%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
SQ S L +++ G+ +TD G I L D L+ L+ + + +G ++ L L LT L
Sbjct: 123 SQLSRLTDLNIRGNRITDKGAIFLSDLKELRFLNISSNTILLEG-IKSLTNLKQLTQLDI 181
Query: 114 RRNNAIT--AQGMKAFAGLINL---------------VKLDLERC---TRIHGGLV---- 149
NN + AQ + L NL V+ E T GG+
Sbjct: 182 SYNNILPSYAQTISEMDQLTNLNLSYNDYGWGSDSNGVRYICEMKNLKTLTFGGICIRQY 241
Query: 150 ---NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+K + +L LNI+ + I S K +S + L L IS +++ D G ++ + +L
Sbjct: 242 IFNYIKEMKQLACLNIR-SSYIGSSSAKLISSMNQLTELDISYNEIGDVGAKHISEMDQL 300
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNL 235
T LN+EGC + + + L + L YLN+
Sbjct: 301 TSLNVEGCRINSEGTEYLKQMKQLTYLNI 329
>gi|149242641|pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
gi|149242643|pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 185/393 (47%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 63 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 116
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ LN + N +TD +KPL
Sbjct: 117 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLN--FGNQVTD--LKPL 168
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 169 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 221
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 222 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 275
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 276 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 333
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 334 SNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 391
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 392 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 424
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 57 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 109
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ LN Q+TD
Sbjct: 110 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNF-GNQVTD 164
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 165 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 222
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 223 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 273
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 274 -NISPLAGLTALT 285
>gi|290990770|ref|XP_002678009.1| predicted protein [Naegleria gruberi]
gi|284091619|gb|EFC45265.1| predicted protein [Naegleria gruberi]
Length = 329
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 117/235 (49%), Gaps = 10/235 (4%)
Query: 199 YLKGLQKLTLLNLEGC------PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
++K K +++N++ C P + + L SL+ ++ Q+ +G + S++
Sbjct: 96 FMKSQFKNSIVNVKFCYRLRNSPDKVKFISEMKQLTSLY---ISDNQIGVEGAKYISEMK 152
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
L L++ +N+I E ++ + L SLN+ GIG EG ++ + L L + Q+
Sbjct: 153 QLTSLDITYNQIGVEGSKYISEMKQLTSLNIYYNGIGVEGTKYISEMKQLTSLNIGYNQI 212
Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
G G +++S + L S+++ + GI + ++ + L SLN+ QI G ++ +
Sbjct: 213 GVEGAKYISEMKQLTSLDIYYNGIGVEGSKYISEMKQLTSLNIGYNQIGVEGSKFISEMK 272
Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
LT L++ G +I GA ++ K L SL+I + G K I ++ LT L++
Sbjct: 273 QLT-LNITGNQIGVEGAKFISEMKQLTSLDITYNQIGVEGSKFISEMKQLTSLDI 326
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 102/202 (50%), Gaps = 2/202 (0%)
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
+ L SL + IG EG ++ + L L+++ Q+G G +++S + L S+N+ +
Sbjct: 127 MKQLTSLYISDNQIGVEGAKYISEMKQLTSLDITYNQIGVEGSKYISEMKQLTSLNIYYN 186
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
GI + ++ + L SLN+ QI G ++ + LT LD++ I G+ Y+
Sbjct: 187 GIGVEGTKYISEMKQLTSLNIGYNQIGVEGAKYISEMKQLTSLDIYYNGIGVEGSKYISE 246
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
K L SL I + G K I ++ LT LN++ N + + + IS + L SL+++
Sbjct: 247 MKQLTSLNIGYNQIGVEGSKFISEMKQLT-LNITGN-QIGVEGAKFISEMKQLTSLDITY 304
Query: 455 SRITSAGLRHLKPLKNLRSLTL 476
++I G + + +K L SL +
Sbjct: 305 NQIGVEGSKFISEMKQLTSLDI 326
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 118/255 (46%), Gaps = 27/255 (10%)
Query: 151 LKGLMKLESLNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
+K K +N+K+C + +S +K +S + L SL IS +++ G Y+ +++LT
Sbjct: 97 MKSQFKNSIVNVKFCYRLRNSPDKVKFISEMKQLTSLYISDNQIGVEGAKYISEMKQLTS 156
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L++ Q+ +G + S++ L LN+ +N I E
Sbjct: 157 LDI------------------------TYNQIGVEGSKYISEMKQLTSLNIYYNGIGVEG 192
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
++ + L SLN+ IG EG ++ + L L++ +G G +++S + L S
Sbjct: 193 TKYISEMKQLTSLNIGYNQIGVEGAKYISEMKQLTSLDIYYNGIGVEGSKYISEMKQLTS 252
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
+N+ + I + ++ + L +LN+ QI G ++ + LT LD+ +I G
Sbjct: 253 LNIGYNQIGVEGSKFISEMKQL-TLNITGNQIGVEGAKFISEMKQLTSLDITYNQIGVEG 311
Query: 389 AAYLRNFKNLRSLEI 403
+ ++ K L SL+I
Sbjct: 312 SKFISEMKQLTSLDI 326
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 1/140 (0%)
Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
S ++ ++ + L SL + QI G ++ + LT LD+ +I G+ Y+ K
Sbjct: 117 SPDKVKFISEMKQLTSLYISDNQIGVEGAKYISEMKQLTSLDITYNQIGVEGSKYISEMK 176
Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456
L SL I G+ G K+I ++ LT LN+ N + + + IS + L SL++ +
Sbjct: 177 QLTSLNIYYNGIGVEGTKYISEMKQLTSLNIGYN-QIGVEGAKYISEMKQLTSLDIYYNG 235
Query: 457 ITSAGLRHLKPLKNLRSLTL 476
I G +++ +K L SL +
Sbjct: 236 IGVEGSKYISEMKQLTSLNI 255
>gi|84043404|ref|XP_951492.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|33348240|gb|AAQ15567.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|62358736|gb|AAX79191.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei]
Length = 1394
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 120/437 (27%), Positives = 183/437 (41%), Gaps = 63/437 (14%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I + HL + L L+ +T ++ + L NL L+L + +
Sbjct: 189 IDNNDARHLFNIGTLEELAITDTMQLT--NIRGISRLTNLKCLELNSTDIDDSCIGEISA 246
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLE 212
KL L++ CN ITD+ P+S L+ L+ L + SC +T GI L L +L +L+L
Sbjct: 247 CAKLSKLSVSECNNITDA--TPISQLSALEELNLNSCYHIT-KGIGTLGMLLRLRILDLS 303
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRC-QLSD---------------DGCEKFSK------ 250
G PV CL L GSL LN++ C QL+D +GC + ++
Sbjct: 304 GVPVEDNCLKDLCDCGSLERLNISYCIQLTDINPLSNATAIEELNLNGCRRITRGIGVVW 363
Query: 251 -IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELS 308
+ L+VL++ +++ L + L ++LD+C G GD L L+ + L+ L +
Sbjct: 364 ALPKLRVLHMKDVHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTL--LSSIVTLEELNIQ 421
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL--- 365
SG+ L L L +N+ IS + SL LN+++ TGL
Sbjct: 422 KCADIISGVGSLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLNMESI----TGLIDV 477
Query: 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD--------------- 410
AL ++ L L L G D+G L N L+ L++ G +
Sbjct: 478 EALANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSL 537
Query: 411 --------AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
V HI L +L LNLS NC + E I L L +SN+ IT +
Sbjct: 538 NLSHCWKMTNVSHISSLEALNELNLS-NCFGINAGWEAIEKLQQLHVAILSNTHITDRNI 596
Query: 463 RHLKPLKNLRSLTLESC 479
H KNL +L L C
Sbjct: 597 SHFSKCKNLVTLDLSFC 613
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 107/414 (25%), Positives = 182/414 (43%), Gaps = 56/414 (13%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
++A A ++ L KL L CT I G+ L L +L+ L++ N +S ++ L +
Sbjct: 477 VEALANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNES-LRSLCLSQTVV 535
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
SL +S C K+T+ ++++ L+ L LNL C A +++ L L L+ ++D
Sbjct: 536 SLNLSHCWKMTN--VSHISSLEALNELNLSNCFGINAGWEAIEKLQQLHVAILSNTHITD 593
Query: 243 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV---NLTG 298
FSK +L L+L F N++ D + L +T LE LNLDSC +GL L
Sbjct: 594 RNISHFSKCKNLVTLDLSFCNKLLD--VTALSNITTLEELNLDSCSNIRKGLSVLGELPR 651
Query: 299 LC--NLKCLELSDTQVGSSG------------------LRHLSGLTNLESINLSFTGISD 338
LC N+K ++L D+ + S G + LS L LE +NL +
Sbjct: 652 LCVLNIKGVQLEDSVIVSLGNGGSLVKVSLDDCAGFGDVTPLSNLVTLEELNLHYCDKVT 711
Query: 339 GSLRKLAGLSSLKSLNLDARQITD------------------------TGLAALTSLTGL 374
+ L L L+ L+L Q+ + T ++++ SLT L
Sbjct: 712 SGMGTLGRLPQLRVLDLGRTQVDNNSLENICTSSIPLVSLNLSHCKKITSISSIASLTAL 771
Query: 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
L++ + SG LR + + D ++++ + SL LNL+ ++T
Sbjct: 772 EELNIDNSCNVTSGWNVFGTLHQLRVATLSNTRINDENIRYVSECKSLNTLNLAFCKDIT 831
Query: 435 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
D T +S +T L LN+ G+ L L L+++ C + +D ++
Sbjct: 832 DVT--ALSKITMLEELNLDCCPNIRKGIETLGTLPKAGILSMKECYMGDSDAQQ 883
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 125/460 (27%), Positives = 205/460 (44%), Gaps = 54/460 (11%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L G+N W + Q L LS + +TD + H C NL +LD +FC
Sbjct: 556 ALNELNLSNCFGINAGWEAIEKLQ--QLHVAILSNTHITDRNISHFSKCKNLVTLDLSFC 613
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
++ D + LSN+T+L +L+L+ C+ I GL L
Sbjct: 614 NKLLD-----VTALSNITTLE----------------------ELNLDSCSNIRKGLSVL 646
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLN 210
L +L LNIK + DS + L +L + + C+ D + L L L LN
Sbjct: 647 GELPRLCVLNIKGVQ-LEDSVIVSLGNGGSLVKVSLDDCAGFGD--VTPLSNLVTLEELN 703
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN---EITDE 267
L C + + +L L L L+L R Q+ ++ E S+ +++L + +IT
Sbjct: 704 LHYCDKVTSGMGTLGRLPQLRVLDLGRTQVDNNSLENICT-SSIPLVSLNLSHCKKITS- 761
Query: 268 CLVHLKGLTNLESLNLD-SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
+ + LT LE LN+D SC + G L L+ LS+T++ +R++S +L
Sbjct: 762 -ISSIASLTALEELNIDNSCNV-TSGWNVFGTLHQLRVATLSNTRINDENIRYVSECKSL 819
Query: 327 ESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
++NL+F I+D + L+ ++ L+ LNLD G+ L +L L + +
Sbjct: 820 NTLNLAFCKDITD--VTALSKITMLEELNLDCCPNIRKGIETLGTLPKAGILSMKECYMG 877
Query: 386 DSGA---AYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
DS A + L N K+L +LE G ++ + +I L L L + + C +
Sbjct: 878 DSDAQQCSILWNSKSLVKLNLERSMGFISVKALSNIATLEELVLGHARKVCCIPS----- 932
Query: 441 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
S L L LN+ + +++ K+L+SL L CK
Sbjct: 933 FSCLPRLRVLNLKYTDFNDDVTKNISESKSLQSLNLSHCK 972
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 98/374 (26%), Positives = 167/374 (44%), Gaps = 41/374 (10%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+DLSG++ + L L + SL+ + C ++++ + H+ L L L+ I A
Sbjct: 513 LDLSGTNTDNESLRSLCLSQTVVSLNLSHCWKMTN--VSHISSLEALNELNLSNCFGINA 570
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
G +A L L L + + L +L++ +CN + D + LS +T
Sbjct: 571 -GWEAIEKLQQLHVAILSNTHITDRNISHFSKCKNLVTLDLSFCNKLLD--VTALSNITT 627
Query: 182 LKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
L+ L + SCS + G++ L L +L +LN++G + + + SL GSL ++L+ C
Sbjct: 628 LEELNLDSCSNIR-KGLSVLGELPRLCVLNIKGVQLEDSVIVSLGNGGSLVKVSLDDCA- 685
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
GF ++T L L LE LNL C G+ L L
Sbjct: 686 -------------------GFGDVTP-----LSNLVTLEELNLHYCDKVTSGMGTLGRLP 721
Query: 301 NLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
L+ L+L TQV ++ L ++ + L S+NLS S+ +A L++L+ LN+D
Sbjct: 722 QLRVLDLGRTQVDNNSLENICTSSIPLVSLNLSHCK-KITSISSIASLTALEELNIDNSC 780
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
+G +L L L RI D Y+ K+L +L + A K I D+
Sbjct: 781 NVTSGWNVFGTLHQLRVATLSNTRINDENIRYVSECKSLNTLNL-------AFCKDITDV 833
Query: 420 SSLTLLNLSQNCNL 433
++L+ + + + NL
Sbjct: 834 TALSKITMLEELNL 847
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 115/465 (24%), Positives = 199/465 (42%), Gaps = 51/465 (10%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL----------------RGL 105
++L +D D ++ + +LQSL+ + C ++D + +G
Sbjct: 942 LNLKYTDFNDDVTKNISESKSLQSLNLSHCKWVTDISVLSSLLALEELNVNCCNGIRKGW 1001
Query: 106 SNLTSLSFRR-----NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+L L R + ITA+ + + LVKL RC ++ V + + LE L
Sbjct: 1002 ESLGKLPLLRVAILSDTNITAKDIACLSSCKTLVKLKFFRCEKLSDVTV-VYEIQSLEEL 1060
Query: 161 NIKWCNCITDSDMKPLSGL------TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++ C+ +K L+ L L + S ++ I K L +L + E
Sbjct: 1061 IVRSCS----DGLKGLNALGTLPRLRFLLLRNVRGSDISVESIGTSKSLVRLHIEMREDL 1116
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
T LS + SL L+L C + G K+ LK L+LG ++I++ L ++
Sbjct: 1117 TDTTP----LSNITSLEELSLRECGDNLGGVGTLEKLPRLKSLDLGLSDISNSTLNYIFL 1172
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE---LSDTQVGSSGLRHLSGLTNLESINL 331
++ SLNLDS L +++ + NL LE L +SG + LS L L +NL
Sbjct: 1173 SRSITSLNLDS----SWELTDISHISNLTALEELNLGGCYYITSGWKALSELPRLRVLNL 1228
Query: 332 SFTGIS---DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
T ++ DG ++ SL +LNL+ +TD A ++ L L + + G
Sbjct: 1229 ESTRVTTRYDGYY--ISRCKSLVTLNLELCDMTDASYIA--NIKTLEELHIGKCKELTQG 1284
Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGL 447
+ L LR L + +TD ++ I+ ++ LNLS L D T L I + L
Sbjct: 1285 FSALFTLPRLRILNLICSLITDEDLREIQPPHTIEELNLSYCVELNDITPLGRIKSIKKL 1344
Query: 448 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 492
++R ++ G R L L L + L++ V+++ ++ L R
Sbjct: 1345 HLRQSHDARRSTEGFRSLLELPCLSWVDLKNASVSSDILRELGKR 1389
>gi|217965469|ref|YP_002351147.1| internalin-A [Listeria monocytogenes HCC23]
gi|386007166|ref|YP_005925444.1| internalin A [Listeria monocytogenes L99]
gi|386025755|ref|YP_005946531.1| internalin A [Listeria monocytogenes M7]
gi|167861970|gb|ACA05684.1| InlA [Listeria monocytogenes]
gi|167861982|gb|ACA05690.1| InlA [Listeria monocytogenes]
gi|217334739|gb|ACK40533.1| internalin-A [Listeria monocytogenes HCC23]
gi|307569976|emb|CAR83155.1| internalin A [Listeria monocytogenes L99]
gi|336022336|gb|AEH91473.1| internalin A [Listeria monocytogenes M7]
Length = 800
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLASLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 104/359 (28%), Positives = 158/359 (44%), Gaps = 96/359 (26%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
+GL NL+ L + QV + L+ L+ LT LE +++S +SD S+ LA L++L+SL
Sbjct: 183 SGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIAT 237
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
QI+D +T L LT+LD L + G L D G +
Sbjct: 238 NNQISD-----ITPLGILTNLD---------------------ELSLNGNQLKDIGT--L 269
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
L++LT L+L+ N L +SGLT L L + ++I+ ++ PL L +LT
Sbjct: 270 ASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|283781267|ref|YP_003372022.1| hypothetical protein Psta_3501 [Pirellula staleyi DSM 6068]
gi|283439720|gb|ADB18162.1| hypothetical protein Psta_3501 [Pirellula staleyi DSM 6068]
Length = 436
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 82/318 (25%), Positives = 138/318 (43%), Gaps = 39/318 (12%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR----IHGGLV 149
+SD LS+L LS N IT +G++ L + +R ++G
Sbjct: 102 VSDEVFARSVALSDLQFLSIYETN-ITNEGLQVLRKFSKLRSFSVAPVSRYEKSMYGAPQ 160
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
+K S K IT ++PL + ++SLQ+ +++ S +A L+ KL +
Sbjct: 161 WSYPFLKQRSDRPK----ITVQGLEPLRNIATIESLQLIDAQLAPSDLAILQSWPKLGSI 216
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
L +T+ + L+A + L L +++ D + SLK L L +++ + L
Sbjct: 217 ALSTT-MTSEAVQHLAACKRVSNLTLGYREITADEIRALGEWESLKKLMLLHAKLSSDAL 275
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
L L +LE L+L+ C + D+ L +L L L L ++ GLRHL L+ I
Sbjct: 276 AALASLESLEQLDLEECNLTDDDLAHLKLPAKLTILGLKRNEIDGPGLRHLVPF-QLKQI 334
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDA----------------------------RQIT 361
L F IS+ +L +LA L +L++LNL +Q+T
Sbjct: 335 GLEFNNISNATLGELAQLRTLETLNLSYCRQIDNQGIESGVLQRMTHVRQLGLRGLKQVT 394
Query: 362 DTGLAALTSLTGLTHLDL 379
D LA + +T L H+ +
Sbjct: 395 DASLAEIVKMTHLKHITI 412
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 81/348 (23%), Positives = 147/348 (42%), Gaps = 53/348 (15%)
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE---KFSKIGSLKVLNLGF 261
+L L L G V+ AL L +L++ ++++G + KFSK+ S V +
Sbjct: 91 QLAHLGLWGEGVSDEVFARSVALSDLQFLSIYETNITNEGLQVLRKFSKLRSFSVAPVSR 150
Query: 262 NE----------------------ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
E IT + L L+ + +ESL L + L L
Sbjct: 151 YEKSMYGAPQWSYPFLKQRSDRPKITVQGLEPLRNIATIESLQLIDAQLAPSDLAILQSW 210
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
L + LS T + S ++HL+ + ++ L + I+ +R L SLK L L +
Sbjct: 211 PKLGSIALSTT-MTSEAVQHLAACKRVSNLTLGYREITADEIRALGEWESLKKLMLLHAK 269
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR-----NFKNLRSLEICGGGL------ 408
++ LAAL SL L LDL +TD A+L+ L+ EI G GL
Sbjct: 270 LSSDALAALASLESLEQLDLEECNLTDDDLAHLKLPAKLTILGLKRNEIDGPGLRHLVPF 329
Query: 409 ------------TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE--LISGLTGLVSLNVSN 454
++A + + L +L LNLS + ++ +E ++ +T + L +
Sbjct: 330 QLKQIGLEFNNISNATLGELAQLRTLETLNLSYCRQIDNQGIESGVLQRMTHVRQLGLRG 389
Query: 455 -SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 501
++T A L + + +L+ +T+ ++ + ++++ +P V F+
Sbjct: 390 LKQVTDASLAEIVKMTHLKHITIRETGISWESVDKMKA-AMPETVVFK 436
>gi|130774813|gb|ABO32419.1| InlA [Listeria monocytogenes]
Length = 800
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 109/389 (28%), Positives = 169/389 (43%), Gaps = 96/389 (24%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + LE LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGLEYLN-------------------NLTQINFSNNQLTD--ITPLKDLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+D L +N Q++D + + +L L L N+ITD
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLSNLTGLTLFNNQITD 156
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
+ LK LTNL L L S I D + L+GL NL+ L + QV + L+ L+ LT L
Sbjct: 157 --IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPLANLTTL 209
Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
E +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 210 ERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-------- 254
Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 446
L + G L D G + L++LT L+L+ N L +SGLT
Sbjct: 255 -------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTK 296
Query: 447 LVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
L L + ++I+ ++ PL L +LT
Sbjct: 297 LTELKLGANQIS-----NISPLAGLTALT 320
>gi|320163290|gb|EFW40189.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 830
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 113/423 (26%), Positives = 173/423 (40%), Gaps = 10/423 (2%)
Query: 63 DLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ 122
DL +D+T + + L+SL QI+ GL LT L+ RRN ++A
Sbjct: 18 DLYFTDITSIPAGTFANLTALESLSL-VSGQITSVSPNAFAGLVALTELNLRRN-PLSAV 75
Query: 123 GMKAFAGLINLVKLDL---ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
AF GL L +L+L E T +L L L SL I ++ L L
Sbjct: 76 PTSAFTGLTALQRLNLDHNEITTLSANAFPHLPALTSL-SLTDNQLTTIPENAFAGLGAL 134
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
TNL + + + ++ A GL LT L L + + S + L L L +N
Sbjct: 135 TNLDLTENQLTTIPENAFA---GLGALTNLQLPSNKIVSMAAISFTGLAGLTTLIMNNNL 191
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
++ + +L+VL+L +N IT GL +L SL++ + + L L
Sbjct: 192 VTTIPENALPGLAALEVLDLRYNSITSVSGNAFAGLLSLRSLDISANAFAGLTALTLFNL 251
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
L L L + + S SGL+ L ++L++ ++ S +GLS+L SL L+
Sbjct: 252 TALHTLTLENNLLTSISANAFSGLSALTWLHLAYNRLTSISANAFSGLSALSSLYLNNNP 311
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
T A LT L L L ++T A L L + + L
Sbjct: 312 CTAIAAEAFNGLTSLKSLTLVANQLTSISANAFVGLNALTYLYLQNNRIVSFSADAFTGL 371
Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 479
L L++ N +T +GLT LV L + ++ITS L LR L L S
Sbjct: 372 PVLIYLDIYSNP-ITSIPSNAFTGLTKLVFLRLDTNQITSISANAFTELSALRGLWLHSN 430
Query: 480 KVT 482
++T
Sbjct: 431 RIT 433
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 165/398 (41%), Gaps = 78/398 (19%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
L F I G +L L +L+ +S + IT+ AFAGL+ L +L+L R
Sbjct: 19 LYFTDITSIPAGTFANLTALESLSLVSGQ----ITSVSPNAFAGLVALTELNLRR----- 69
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
N ++ +GLT L+ L + +++T
Sbjct: 70 --------------------NPLSAVPTSAFTGLTALQRLNLDHNEITT----------- 98
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
++A L AL S L+L QL+ F+ +G+L L+L N++T
Sbjct: 99 ----------LSANAFPHLPALTS---LSLTDNQLTTIPENAFAGLGALTNLDLTENQLT 145
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
GL L +L L S I ++ TGL L L +++ V + L GL
Sbjct: 146 TIPENAFAGLGALTNLQLPSNKIVSMAAISFTGLAGLTTLIMNNNLVTTIPENALPGLAA 205
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
LE ++L + I+ S AGL SL+SL++ A + GLT L LF
Sbjct: 206 LEVLDLRYNSITSVSGNAFAGLLSLRSLDISAN-----------AFAGLTALTLF----- 249
Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 445
N L +L + LT LS+LT L+L+ N LT + SGL+
Sbjct: 250 --------NLTALHTLTLENNLLTSISANAFSGLSALTWLHLAYN-RLTSISANAFSGLS 300
Query: 446 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 483
L SL ++N+ T+ L +L+SLTL + ++T+
Sbjct: 301 ALSSLYLNNNPCTAIAAEAFNGLTSLKSLTLVANQLTS 338
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 136/331 (41%), Gaps = 6/331 (1%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER--CTRIHGGLVNLKGLMKLES 159
GL LT+L N I + +F GL L L + T I L GL LE
Sbjct: 152 FAGLGALTNLQLPSNK-IVSMAAISFTGLAGLTTLIMNNNLVTTIPENA--LPGLAALEV 208
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L++++ N IT +GL +L+SL IS + L L L L LE +T+
Sbjct: 209 LDLRY-NSITSVSGNAFAGLLSLRSLDISANAFAGLTALTLFNLTALHTLTLENNLLTSI 267
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
++ S L +L +L+L +L+ FS + +L L L N T GLT+L+
Sbjct: 268 SANAFSGLSALTWLHLAYNRLTSISANAFSGLSALSSLYLNNNPCTAIAAEAFNGLTSLK 327
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
SL L + + GL L L L + ++ S +GL L +++ I+
Sbjct: 328 SLTLVANQLTSISANAFVGLNALTYLYLQNNRIVSFSADAFTGLPVLIYLDIYSNPITSI 387
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
GL+ L L LD QIT A T L+ L L L RIT A L
Sbjct: 388 PSNAFTGLTKLVFLRLDTNQITSISANAFTELSALRGLWLHSNRITTLSANAFIGLTALT 447
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
+L + LT K L + L+ S N
Sbjct: 448 NLPLNDNPLTTTPPGLFKGLPNSLFLSYSSN 478
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 99/245 (40%), Gaps = 6/245 (2%)
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
+L F +IT LT LESL+L S I GL L L L + +
Sbjct: 17 FDLYFTDITSIPAGTFANLTALESLSLVSGQITSVSPNAFAGLVALTELNLRRNPLSAVP 76
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
+GLT L+ +NL I+ S L +L SL+L Q+T A L LT+
Sbjct: 77 TSAFTGLTALQRLNLDHNEITTLSANAFPHLPALTSLSLTDNQLTTIPENAFAGLGALTN 136
Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436
LDL ++T L +L++ + L+ LT L ++ N +T
Sbjct: 137 LDLTENQLTTIPENAFAGLGALTNLQLPSNKIVSMAAISFTGLAGLTTLIMNNNL-VTTI 195
Query: 437 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 496
+ GL L L++ + ITS L +LRSL ++AN L + L N
Sbjct: 196 PENALPGLAALEVLDLRYNSITSVSGNAFAGLLSLRSL-----DISANAFAGLTALTLFN 250
Query: 497 LVSFR 501
L +
Sbjct: 251 LTALH 255
Score = 45.4 bits (106), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 6/201 (2%)
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
N +L T + S + LT LES++L I+ S AGL +L LNL +
Sbjct: 13 NTTQFDLYFTDITSIPAGTFANLTALESLSLVSGQITSVSPNAFAGLVALTELNLRRNPL 72
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
+ +A T LT L L+L IT A + L SL + LT L
Sbjct: 73 SAVPTSAFTGLTALQRLNLDHNEITTLSANAFPHLPALTSLSLTDNQLTTIPENAFAGLG 132
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
+LT L+L++N LT +GL L +L + +++I S L L +L + +
Sbjct: 133 ALTNLDLTEN-QLTTIPENAFAGLGALTNLQLPSNKIVSMAAISFTGLAGLTTLIMNN-- 189
Query: 481 VTANDIKRLQSRDLPNLVSFR 501
N + + LP L +
Sbjct: 190 ---NLVTTIPENALPGLAALE 207
>gi|404406915|ref|YP_006689630.1| internalin A [Listeria monocytogenes SLCC2376]
gi|130774829|gb|ABO32427.1| InlA [Listeria monocytogenes]
gi|167861972|gb|ACA05685.1| InlA [Listeria monocytogenes]
gi|194326147|emb|CAQ77232.1| internalin A [Listeria monocytogenes]
gi|404241064|emb|CBY62464.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC2376]
Length = 800
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 104/359 (28%), Positives = 158/359 (44%), Gaps = 96/359 (26%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
+GL NL+ L + QV + L+ L+ LT LE +++S +SD S+ LA L++L+SL
Sbjct: 183 SGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIAT 237
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
QI+D +T L LT+LD L + G L D G +
Sbjct: 238 NNQISD-----ITPLGILTNLD---------------------ELSLNGNQLKDIGT--L 269
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
L++LT L+L+ N L +SGLT L L + ++I+ ++ PL L +LT
Sbjct: 270 ASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|22347544|gb|AAM95917.1| internalin A precursor [Listeria monocytogenes]
Length = 741
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 254
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 255 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 312
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 313 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVKYKV 370
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 371 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 403
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 34 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 89
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 90 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 142
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 143 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 198
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 199 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 252
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 253 ----NISPLAGLTALT 264
>gi|157877504|ref|XP_001687069.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68130144|emb|CAJ09455.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 1207
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 148/294 (50%), Gaps = 17/294 (5%)
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
SG+ L L++L L++ P+ A L +L+ SL + L+RC+ E ++ L
Sbjct: 421 SGVRSLGSLKQLRCLHILYTPLHEAFLQALTTCSSLECIILHRCR-GVRSLEPLRRLQHL 479
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGD-EGLVNLTGLCNLKCLELSDTQV 312
+ L+L +TD L+ L G T L L LD C I D L NL G L+ L + T +
Sbjct: 480 QSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITDLSFLANLRG--TLERLLMPRTLL 537
Query: 313 GSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
++ ++H+ L ++L S ++D + L L++L+ LNL +TD G +AL +
Sbjct: 538 SNANMQHIGLCDKLVELHLQSLRQLTDIGV--LKDLTALRVLNLSDNLVTDEGCSALHCM 595
Query: 372 TGLTHLDLFGAR-ITDSGAAYL---RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
L L+L R IT AA+ R L SL++ +TDAGV+ +++ + L LNL
Sbjct: 596 PSLQRLNLAFCRCITSLAAAFTASGRWMHRLLSLDVSHTNITDAGVQCMQECTDLRYLNL 655
Query: 428 SQNCNLTD-KTLELISGLTGLVSLNVSNSRITSAGLRHLKP-LKNLRSLTLESC 479
C ++ + L + ++ L LN+ +R+T H P +NLR L+L C
Sbjct: 656 ---CGCSELRRLSWLQKMSSLRWLNLGGTRVTDEETNHYLPCARNLRFLSLSDC 706
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 143/313 (45%), Gaps = 53/313 (16%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-GGLEHLRGLSNLTSLSFRRNN 117
L S+ L G VTD+ L+ L C+ L+ L + C QI+D L +LRG L L R
Sbjct: 479 LQSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITDLSFLANLRG--TLERLLMPR-T 535
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
++ M+ LV+L L+ +L+ L +D+ L
Sbjct: 536 LLSNANMQHIGLCDKLVELHLQ----------SLRQL----------------TDIGVLK 569
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA--------LGS 229
LT L+ L +S + VTD G + L + L LNL C C+ SL+A +
Sbjct: 570 DLTALRVLNLSDNLVTDEGCSALHCMPSLQRLNLAFC----RCITSLAAAFTASGRWMHR 625
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGI 288
L L+++ ++D G + + L+ LNL G +E+ L L+ +++L LNL +
Sbjct: 626 LLSLDVSHTNITDAGVQCMQECTDLRYLNLCGCSELRR--LSWLQKMSSLRWLNLGGTRV 683
Query: 289 GDEGLVN-LTGLCNLKCLELSDTQVGSSGLRHLS---GLTNLESINLSFTGISDGSLRKL 344
DE + L NL+ L LSD SG+R LS L LE ++L T ++D L L
Sbjct: 684 TDEETNHYLPCARNLRFLSLSDC----SGVRSLSFAVRLHQLEYLSLESTSVADSELPCL 739
Query: 345 AGLSSLKSLNLDA 357
L+ L+L++
Sbjct: 740 CHCRKLRYLSLES 752
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 86/323 (26%), Positives = 140/323 (43%), Gaps = 36/323 (11%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL-GSLF 231
++PL L +L+SL + VTD+ + L G +L L L+ C L L+ L G+L
Sbjct: 470 LEPLRRLQHLQSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITD-LSFLANLRGTLE 528
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
L + R LS+ + L L HL+ L L + +
Sbjct: 529 RLLMPRTLLSNANMQHIGLCDKLVEL-------------HLQSLRQLTDIGV-------- 567
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF----TGISDGSLRKLAGL 347
L L L+ L LSD V G L + +L+ +NL+F T ++ +
Sbjct: 568 ----LKDLTALRVLNLSDNLVTDEGCSALHCMPSLQRLNLAFCRCITSLAAAFTASGRWM 623
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
L SL++ ITD G+ + T L +L+L G ++L+ +LR L + G
Sbjct: 624 HRLLSLDVSHTNITDAGVQCMQECTDLRYLNLCGCSELRR-LSWLQKMSSLRWLNLGGTR 682
Query: 408 LTDAGVKHIKDLS-SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 466
+TD H + +L L+LS +C+ ++L L L L++ ++ + + L L
Sbjct: 683 VTDEETNHYLPCARNLRFLSLS-DCSGV-RSLSFAVRLHQLEYLSLESTSVADSELPCLC 740
Query: 467 PLKNLRSLTLESCKVTANDIKRL 489
+ LR L+LESC V D+ L
Sbjct: 741 HCRKLRYLSLESC-VDIRDVSPL 762
>gi|255525367|ref|ZP_05392306.1| putative cell wall binding repeat 2-containing protein [Clostridium
carboxidivorans P7]
gi|296187977|ref|ZP_06856369.1| leucine Rich repeat protein [Clostridium carboxidivorans P7]
gi|255510938|gb|EET87239.1| putative cell wall binding repeat 2-containing protein [Clostridium
carboxidivorans P7]
gi|296047103|gb|EFG86545.1| leucine Rich repeat protein [Clostridium carboxidivorans P7]
Length = 660
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 101/319 (31%), Positives = 162/319 (50%), Gaps = 45/319 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
+KD S L++L + ++D + L L NLT NL KL
Sbjct: 373 IKDISGLENLTNLQILALTDTEVSDLSPLKNLT----------------------NLQKL 410
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
+L RC ++ + LK L L++LN+ WC + SD+ PL LTNL+ L + +++D+
Sbjct: 411 NL-RCAQV-SDISPLKYLTNLQNLNL-WCAQV--SDISPLKDLTNLQKLDLHIPQISDT- 464
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLK 255
+ LK L L L+L+ V + ++ L L +L LNL+R Q+SD G + + + L
Sbjct: 465 -SALKNLTNLQQLSLQYTQV--SHINGLENLTNLQQLNLDRTQVSDISGLKDLTNLQKLN 521
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
+ N + I+ LK LTNL+ L+L S + D + L L NL+ L+L++ QV S
Sbjct: 522 LNNNQVSNIS-----PLKYLTNLQELDLSSNQVSD--ISPLKYLTNLQKLDLNNNQV--S 572
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
+ L LTNL+ + L+ ISD + L L +L+ L L QI+D ++ L L L
Sbjct: 573 DVSPLKYLTNLQDLLLNVNQISD--ISPLKDLINLQGLYLGINQISD--ISPLKYLINLR 628
Query: 376 HLDLFGARITDSGAAYLRN 394
L+L +++D+ L+N
Sbjct: 629 ELNLKHTQVSDADKQSLKN 647
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 99/330 (30%), Positives = 157/330 (47%), Gaps = 56/330 (16%)
Query: 125 KAFAGLIN-----LVKLDLERCTRI-------HGGLVNLKGLMKLESLNIKWCNCITDSD 172
KA IN L+K D+ + T + H + ++ GL L +L I SD
Sbjct: 338 KAIRATINKPTGELLKSDVNQITELDVSIINEHTDIKDISGLENLTNLQILALTDTEVSD 397
Query: 173 MKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
+ PL LTNL+ L + C++V+D S + YL LQ L L C + + L L +L
Sbjct: 398 LSPLKNLTNLQKLNLRCAQVSDISPLKYLTNLQNLNLW----C-AQVSDISPLKDLTNLQ 452
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG---LTNLESLNLDSCGI 288
L+L+ Q+SD K + +L+ L+L + +++ H+ G LTNL+ LNLD +
Sbjct: 453 KLDLHIPQISDTSALK--NLTNLQQLSLQYTQVS-----HINGLENLTNLQQLNLDRTQV 505
Query: 289 GD--------------------EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
D + L L NL+ L+LS QV S + L LTNL+
Sbjct: 506 SDISGLKDLTNLQKLNLNNNQVSNISPLKYLTNLQELDLSSNQV--SDISPLKYLTNLQK 563
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
++L+ +SD S L L++L+ L L+ QI+D ++ L L L L L +I+D
Sbjct: 564 LDLNNNQVSDVS--PLKYLTNLQDLLLNVNQISD--ISPLKDLINLQGLYLGINQISD-- 617
Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
+ L+ NLR L + ++DA + +K+
Sbjct: 618 ISPLKYLINLRELNLKHTQVSDADKQSLKN 647
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 117/226 (51%), Gaps = 24/226 (10%)
Query: 261 FNEITD-ECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGL--CNLKCLELSDTQVGSSG 316
NE TD + + L+ LTNL+ L L + D L NLT L NL+C ++SD
Sbjct: 367 INEHTDIKDISGLENLTNLQILALTDTEVSDLSPLKNLTNLQKLNLRCAQVSD------- 419
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
+ L LTNL+++NL +SD + L L++L+ L+L QI+DT +AL +LT L
Sbjct: 420 ISPLKYLTNLQNLNLWCAQVSD--ISPLKDLTNLQKLDLHIPQISDT--SALKNLTNLQQ 475
Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436
L L +++ L N NL+ L + ++D + +KDL++L N
Sbjct: 476 LSLQYTQVSHING--LENLTNLQQLNLDRTQVSD--ISGLKDLTNLQ---KLNLNNNQVS 528
Query: 437 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
+ + LT L L++S+++++ + LK L NL+ L L + +V+
Sbjct: 529 NISPLKYLTNLQELDLSSNQVSD--ISPLKYLTNLQKLDLNNNQVS 572
>gi|167862002|gb|ACA05700.1| InlA [Listeria monocytogenes]
Length = 800
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|85679228|gb|ABC72030.1| InlA [Listeria monocytogenes]
Length = 794
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 203 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 255
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 256 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 309
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 310 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 367
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 368 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 425
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 426 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 458
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 104/359 (28%), Positives = 158/359 (44%), Gaps = 96/359 (26%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 53 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 97
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 98 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 127
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 128 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 181
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
+GL NL+ L + QV + L+ L+ LT LE +++S +SD S+ LA L++L+SL
Sbjct: 182 SGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIAT 236
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
QI+D +T L LT+LD L + G L D G +
Sbjct: 237 NNQISD-----ITPLGILTNLD---------------------ELSLNGNQLKDIGT--L 268
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
L++LT L+L+ N L +SGLT L L + ++I+ ++ PL L +LT
Sbjct: 269 ASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAGLTALT 319
>gi|219821267|gb|ACL37756.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVKYKV 368
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|297171918|gb|ADI22905.1| hypothetical protein [uncultured Rhizobium sp. HF0500_35F13]
Length = 307
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 2/165 (1%)
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
A + G++ +T+ +T L+ L LG++ YL+L+ + DDG +K+ L+VL
Sbjct: 41 AQVSGIRSVTV-RFTNSALTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVL 99
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
L EITD L L++L L +GD + L L L+++ QV SGL
Sbjct: 100 VLSGTEITDAGFSQLSNLSDLNQLTASEL-MGDGTMAALASATKLNFLDMTGGQVTDSGL 158
Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
HLSG+ NL+ + LS T I+D L L ++ L+ L L+ +ITD
Sbjct: 159 SHLSGMKNLKRLTLSRTAITDKGLEHLQSITVLQDLQLNNTKITD 203
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 2/157 (1%)
Query: 157 LESLNIKWCN-CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
+ S+ +++ N +T D++PL L + L +S + V D G+ ++ L+ L +L L G
Sbjct: 46 IRSVTVRFTNSALTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGTE 105
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+T A LS L L L + + D + L L++ ++TD L HL G+
Sbjct: 106 ITDAGFSQLSNLSDLNQLTASEL-MGDGTMAALASATKLNFLDMTGGQVTDSGLSHLSGM 164
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
NL+ L L I D+GL +L + L+ L+L++T++
Sbjct: 165 KNLKRLTLSRTAITDKGLEHLQSITVLQDLQLNNTKI 201
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 80/147 (54%), Gaps = 1/147 (0%)
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
+T + L L L + L+L +GD+G+V++ L L+ L LS T++ +G LS L
Sbjct: 58 LTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGTEITDAGFSQLSNL 117
Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
++L + S + DG++ LA + L L++ Q+TD+GL+ L+ + L L L
Sbjct: 118 SDLNQLTASEL-MGDGTMAALASATKLNFLDMTGGQVTDSGLSHLSGMKNLKRLTLSRTA 176
Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTD 410
ITD G +L++ L+ L++ +TD
Sbjct: 177 ITDKGLEHLQSITVLQDLQLNNTKITD 203
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 99/198 (50%), Gaps = 27/198 (13%)
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L + L+LSDT VG G+ H++ L L+ + LS T I+D +L+ LS L L +
Sbjct: 69 LGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGTEITDAGFSQLSNLSDLNQLTA-SE 127
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
+ D +AAL S T L LD+ GG +TD+G+ H+
Sbjct: 128 LMGDGTMAALASATKLNFLDM------------------------TGGQVTDSGLSHLSG 163
Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 478
+ +L L LS+ +TDK LE + +T L L ++N++IT GL L+ L NL L +
Sbjct: 164 MKNLKRLTLSRTA-ITDKGLEHLQSITVLQDLQLNNTKITDEGLLLLEGLSNLNLLAITD 222
Query: 479 CKVTANDIKRLQSRDLPN 496
T N + +LQ+ LP+
Sbjct: 223 TGTTLNGVTKLQAA-LPD 239
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 2/127 (1%)
Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424
L L L + +LDL + D G ++ + L+ L + G +TDAG + +LS L
Sbjct: 63 LEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGTEITDAGFSQLSNLSDLNQ 122
Query: 425 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 484
L S+ + D T+ ++ T L L+++ ++T +GL HL +KNL+ LTL +T
Sbjct: 123 LTASEL--MGDGTMAALASATKLNFLDMTGGQVTDSGLSHLSGMKNLKRLTLSRTAITDK 180
Query: 485 DIKRLQS 491
++ LQS
Sbjct: 181 GLEHLQS 187
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 14/167 (8%)
Query: 323 LTNLESINLSFT--GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
++ + S+ + FT ++ L L L ++ L+L + D G+ + L GL L L
Sbjct: 43 VSGIRSVTVRFTNSALTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLS 102
Query: 381 GARITDSGAAYLRNFKNLRSL---EICGGGLTDAGVKHIKDLSSLTLLNL--SQNCNLTD 435
G ITD+G + L N +L L E+ G G A L+S T LN +TD
Sbjct: 103 GTEITDAGFSQLSNLSDLNQLTASELMGDGTMAA-------LASATKLNFLDMTGGQVTD 155
Query: 436 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
L +SG+ L L +S + IT GL HL+ + L+ L L + K+T
Sbjct: 156 SGLSHLSGMKNLKRLTLSRTAITDKGLEHLQSITVLQDLQLNNTKIT 202
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 6/134 (4%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+DLS + V D G++H+ LQ L + +I+D G L LS+L L+ +
Sbjct: 75 LDLSDTSVGDDGMVHINKLEGLQVLVLS-GTEITDAGFSQLSNLSDLNQLTASE---LMG 130
Query: 122 QG-MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
G M A A L LD+ GL +L G+ L+ L + ITD ++ L +T
Sbjct: 131 DGTMAALASATKLNFLDMTGGQVTDSGLSHLSGMKNLKRLTLSRT-AITDKGLEHLQSIT 189
Query: 181 NLKSLQISCSKVTD 194
L+ LQ++ +K+TD
Sbjct: 190 VLQDLQLNNTKITD 203
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ D M +AS + L +D++G VTDSGL HL NL+ L + I+D GLEHL+
Sbjct: 129 MGDGTMAALAS-ATKLNFLDMTGGQVTDSGLSHLSGMKNLKRLTLSRT-AITDKGLEHLQ 186
Query: 104 GLSNLTSLSFRRNNAIT 120
++ L L N IT
Sbjct: 187 SITVLQDLQL-NNTKIT 202
>gi|219821363|gb|ACL37820.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DINPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 368
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 34 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 86
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 87 TGLTLFNNQI--TDINPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 141
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 142 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 199
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 200 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 250
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 251 -NISPLAGLTALT 262
>gi|167861924|gb|ACA05661.1| InlA [Listeria monocytogenes]
Length = 800
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLSDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 101/359 (28%), Positives = 155/359 (43%), Gaps = 96/359 (26%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
+GL +L+ L + QV + L+ L+ LT LE +++S +SD S+ LA L++L+SL
Sbjct: 183 SGLTSLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIAT 237
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
QI+D + L LT L L L G ++ D G L + NL L++ I
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLSDLDLANN--------QI 285
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
+L+ L SGLT L L + ++I+ ++ PL L +LT
Sbjct: 286 SNLAPL-------------------SGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|340052071|emb|CBY84387.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|219821309|gb|ACL37784.1| internalin A [Listeria monocytogenes]
gi|219821393|gb|ACL37840.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 368
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|112959522|gb|ABI27288.1| truncated internalin A [Listeria monocytogenes]
Length = 538
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 31 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 84
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 85 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 136
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 137 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 189
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 190 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 243
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 244 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 301
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 302 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 359
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 360 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 392
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 23 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 78
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 79 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 131
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 132 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 187
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 188 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 241
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 242 ----NISPLAGLTALT 253
>gi|298359896|gb|ADI77527.1| internalin A [Listeria monocytogenes]
Length = 797
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 104/359 (28%), Positives = 158/359 (44%), Gaps = 96/359 (26%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
+GL NL+ L + QV + L+ L+ LT LE +++S +SD S+ LA L++L+SL
Sbjct: 183 SGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIAT 237
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
QI+D +T L LT+LD L + G L D G +
Sbjct: 238 NNQISD-----ITPLGILTNLD---------------------ELSLNGNQLKDIGT--L 269
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
L++LT L+L+ N L +SGLT L L + ++I+ ++ PL L +LT
Sbjct: 270 ASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|22347552|gb|AAM95921.1| internalin A precursor [Listeria monocytogenes]
Length = 744
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 254
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 255 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 312
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 313 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 370
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 371 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 403
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 36 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 88
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 89 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 143
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 144 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 201
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 202 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 252
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 253 -NISPLAGLTALT 264
>gi|313485061|gb|ADR53004.1| InlA [Listeria monocytogenes]
Length = 724
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|22347570|gb|AAM95930.1| internalin A precursor [Listeria monocytogenes]
Length = 744
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 254
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 255 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 312
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 313 YNNKVSDVSSLASLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 370
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 371 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 403
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 34 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 89
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 90 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 142
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 143 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 198
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 199 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 252
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 253 ----NISPLAGLTALT 264
>gi|167861906|gb|ACA05652.1| InlA [Listeria monocytogenes]
Length = 800
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|46906689|ref|YP_013078.1| internalin A [Listeria monocytogenes serotype 4b str. F2365]
gi|254932755|ref|ZP_05266114.1| internalin A [Listeria monocytogenes HPB2262]
gi|405748809|ref|YP_006672275.1| internalin A [Listeria monocytogenes ATCC 19117]
gi|405751670|ref|YP_006675135.1| internalin A [Listeria monocytogenes SLCC2378]
gi|417316727|ref|ZP_12103366.1| internalin A [Listeria monocytogenes J1-220]
gi|424713328|ref|YP_007014043.1| Internalin-A [Listeria monocytogenes serotype 4b str. LL195]
gi|424822183|ref|ZP_18247196.1| Internalin-A [Listeria monocytogenes str. Scott A]
gi|50400895|sp|Q723K6.1|INLA_LISMF RecName: Full=Internalin-A; Flags: Precursor
gi|46879954|gb|AAT03255.1| internalin A [Listeria monocytogenes serotype 4b str. F2365]
gi|130774757|gb|ABO32393.1| InlA [Listeria monocytogenes]
gi|130774763|gb|ABO32396.1| InlA [Listeria monocytogenes]
gi|130774781|gb|ABO32405.1| InlA [Listeria monocytogenes]
gi|130774785|gb|ABO32407.1| InlA [Listeria monocytogenes]
gi|130774789|gb|ABO32409.1| InlA [Listeria monocytogenes]
gi|167861870|gb|ACA05634.1| InlA [Listeria monocytogenes]
gi|167861880|gb|ACA05639.1| InlA [Listeria monocytogenes]
gi|167861882|gb|ACA05640.1| InlA [Listeria monocytogenes]
gi|167861884|gb|ACA05641.1| InlA [Listeria monocytogenes]
gi|167861886|gb|ACA05642.1| InlA [Listeria monocytogenes]
gi|167861896|gb|ACA05647.1| InlA [Listeria monocytogenes]
gi|167861898|gb|ACA05648.1| InlA [Listeria monocytogenes]
gi|167861910|gb|ACA05654.1| InlA [Listeria monocytogenes]
gi|167861912|gb|ACA05655.1| InlA [Listeria monocytogenes]
gi|167861952|gb|ACA05675.1| InlA [Listeria monocytogenes]
gi|167861958|gb|ACA05678.1| InlA [Listeria monocytogenes]
gi|167861960|gb|ACA05679.1| InlA [Listeria monocytogenes]
gi|167861966|gb|ACA05682.1| InlA [Listeria monocytogenes]
gi|167861988|gb|ACA05693.1| InlA [Listeria monocytogenes]
gi|167861996|gb|ACA05697.1| InlA [Listeria monocytogenes]
gi|167862008|gb|ACA05703.1| InlA [Listeria monocytogenes]
gi|167862010|gb|ACA05704.1| InlA [Listeria monocytogenes]
gi|167862014|gb|ACA05706.1| InlA [Listeria monocytogenes]
gi|167862016|gb|ACA05707.1| InlA [Listeria monocytogenes]
gi|194239380|emb|CAQ76830.1| internalin A [Listeria monocytogenes]
gi|194239394|emb|CAQ76837.1| internalin A [Listeria monocytogenes]
gi|194326167|emb|CAQ77242.1| internalin A [Listeria monocytogenes]
gi|223006786|gb|ACM69350.1| internalin A [Listeria monocytogenes]
gi|223006788|gb|ACM69351.1| internalin A [Listeria monocytogenes]
gi|223006798|gb|ACM69356.1| internalin A [Listeria monocytogenes]
gi|223006804|gb|ACM69359.1| internalin A [Listeria monocytogenes]
gi|223006810|gb|ACM69362.1| internalin A [Listeria monocytogenes]
gi|293584308|gb|EFF96340.1| internalin A [Listeria monocytogenes HPB2262]
gi|294358391|gb|ADE73848.1| InlA [Listeria monocytogenes]
gi|294358403|gb|ADE73854.1| InlA [Listeria monocytogenes]
gi|298359884|gb|ADI77521.1| internalin A [Listeria monocytogenes]
gi|298359898|gb|ADI77528.1| internalin A [Listeria monocytogenes]
gi|298359902|gb|ADI77530.1| internalin A [Listeria monocytogenes]
gi|298359908|gb|ADI77533.1| internalin A [Listeria monocytogenes]
gi|298359940|gb|ADI77549.1| internalin A [Listeria monocytogenes]
gi|298359948|gb|ADI77553.1| internalin A [Listeria monocytogenes]
gi|298360056|gb|ADI77607.1| internalin A [Listeria monocytogenes]
gi|298360094|gb|ADI77626.1| internalin A [Listeria monocytogenes]
gi|298360148|gb|ADI77653.1| internalin A [Listeria monocytogenes]
gi|298360270|gb|ADI77714.1| internalin A [Listeria monocytogenes]
gi|298360288|gb|ADI77723.1| internalin A [Listeria monocytogenes]
gi|298360324|gb|ADI77741.1| internalin A [Listeria monocytogenes]
gi|298360326|gb|ADI77742.1| internalin A [Listeria monocytogenes]
gi|298360350|gb|ADI77754.1| internalin A [Listeria monocytogenes]
gi|298360362|gb|ADI77760.1| internalin A [Listeria monocytogenes]
gi|298360456|gb|ADI77807.1| internalin A [Listeria monocytogenes]
gi|298360480|gb|ADI77819.1| internalin A [Listeria monocytogenes]
gi|298360508|gb|ADI77833.1| internalin A [Listeria monocytogenes]
gi|298360520|gb|ADI77839.1| internalin A [Listeria monocytogenes]
gi|298360554|gb|ADI77856.1| internalin A [Listeria monocytogenes]
gi|298360632|gb|ADI77895.1| internalin A [Listeria monocytogenes]
gi|298360634|gb|ADI77896.1| internalin A [Listeria monocytogenes]
gi|298360662|gb|ADI77910.1| internalin A [Listeria monocytogenes]
gi|328475915|gb|EGF46639.1| internalin A [Listeria monocytogenes J1-220]
gi|332310863|gb|EGJ23958.1| Internalin-A [Listeria monocytogenes str. Scott A]
gi|340052073|emb|CBY84388.1| internalin A [Listeria monocytogenes]
gi|340052075|emb|CBY84389.1| internalin A [Listeria monocytogenes]
gi|404218009|emb|CBY69373.1| internalin A (LPXTG motif) [Listeria monocytogenes ATCC 19117]
gi|404220870|emb|CBY72233.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC2378]
gi|424012512|emb|CCO63052.1| Internalin-A [Listeria monocytogenes serotype 4b str. LL195]
gi|443428812|gb|AGC92205.1| internalin A [Listeria monocytogenes]
gi|443428814|gb|AGC92206.1| internalin A [Listeria monocytogenes]
gi|443428816|gb|AGC92207.1| internalin A [Listeria monocytogenes]
gi|443428818|gb|AGC92208.1| internalin A [Listeria monocytogenes]
gi|443428826|gb|AGC92212.1| internalin A [Listeria monocytogenes]
gi|443428836|gb|AGC92217.1| internalin A [Listeria monocytogenes]
gi|443428840|gb|AGC92219.1| internalin A [Listeria monocytogenes]
gi|443428852|gb|AGC92225.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|223006806|gb|ACM69360.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|219821396|gb|ACL37842.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVKYKV 368
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|322952083|gb|ADX21041.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|112959440|gb|ABI27247.1| truncated internalin A [Listeria monocytogenes]
gi|112959442|gb|ABI27248.1| truncated internalin A [Listeria monocytogenes]
gi|112959448|gb|ABI27251.1| truncated internalin A [Listeria monocytogenes]
gi|112959454|gb|ABI27254.1| truncated internalin A [Listeria monocytogenes]
gi|112959458|gb|ABI27256.1| truncated internalin A [Listeria monocytogenes]
gi|112959460|gb|ABI27257.1| truncated internalin A [Listeria monocytogenes]
gi|112959462|gb|ABI27258.1| truncated internalin A [Listeria monocytogenes]
gi|112959472|gb|ABI27263.1| truncated internalin A [Listeria monocytogenes]
gi|112959480|gb|ABI27267.1| truncated internalin A [Listeria monocytogenes]
gi|112959482|gb|ABI27268.1| truncated internalin A [Listeria monocytogenes]
gi|112959488|gb|ABI27271.1| truncated internalin A [Listeria monocytogenes]
gi|112959514|gb|ABI27284.1| truncated internalin A [Listeria monocytogenes]
gi|112959538|gb|ABI27296.1| truncated internalin A [Listeria monocytogenes]
gi|112959542|gb|ABI27298.1| truncated internalin A [Listeria monocytogenes]
gi|112959548|gb|ABI27301.1| truncated internalin A [Listeria monocytogenes]
Length = 542
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 247
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 248 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 305
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 306 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 363
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 364 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 27 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 83 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 135
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 136 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 191
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 192 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 245
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 246 ----NISPLAGLTALT 257
>gi|298359724|gb|ADI77441.1| truncated internalin A [Listeria monocytogenes]
gi|298359728|gb|ADI77443.1| truncated internalin A [Listeria monocytogenes]
gi|298359760|gb|ADI77459.1| truncated internalin A [Listeria monocytogenes]
gi|298359768|gb|ADI77463.1| truncated internalin A [Listeria monocytogenes]
gi|298359778|gb|ADI77468.1| truncated internalin A [Listeria monocytogenes]
gi|298359784|gb|ADI77471.1| truncated internalin A [Listeria monocytogenes]
gi|298359796|gb|ADI77477.1| truncated internalin A [Listeria monocytogenes]
gi|298359800|gb|ADI77479.1| truncated internalin A [Listeria monocytogenes]
gi|298359816|gb|ADI77487.1| truncated internalin A [Listeria monocytogenes]
gi|298359840|gb|ADI77499.1| truncated internalin A [Listeria monocytogenes]
gi|298359850|gb|ADI77504.1| truncated internalin A [Listeria monocytogenes]
gi|298359852|gb|ADI77505.1| truncated internalin A [Listeria monocytogenes]
gi|298359860|gb|ADI77509.1| truncated internalin A [Listeria monocytogenes]
gi|298359916|gb|ADI77537.1| truncated internalin A [Listeria monocytogenes]
gi|298359928|gb|ADI77543.1| truncated internalin A [Listeria monocytogenes]
gi|298359936|gb|ADI77547.1| truncated internalin A [Listeria monocytogenes]
gi|298359962|gb|ADI77560.1| truncated internalin A [Listeria monocytogenes]
gi|298359996|gb|ADI77577.1| truncated internalin A [Listeria monocytogenes]
gi|298360016|gb|ADI77587.1| truncated internalin A [Listeria monocytogenes]
gi|298360018|gb|ADI77588.1| truncated internalin A [Listeria monocytogenes]
gi|298360022|gb|ADI77590.1| truncated internalin A [Listeria monocytogenes]
gi|298360024|gb|ADI77591.1| truncated internalin A [Listeria monocytogenes]
gi|298360046|gb|ADI77602.1| truncated internalin A [Listeria monocytogenes]
gi|298360048|gb|ADI77603.1| truncated internalin A [Listeria monocytogenes]
gi|298360058|gb|ADI77608.1| truncated internalin A [Listeria monocytogenes]
gi|298360062|gb|ADI77610.1| truncated internalin A [Listeria monocytogenes]
gi|298360088|gb|ADI77623.1| truncated internalin A [Listeria monocytogenes]
gi|298360120|gb|ADI77639.1| truncated internalin A [Listeria monocytogenes]
gi|298360152|gb|ADI77655.1| truncated internalin A [Listeria monocytogenes]
gi|298360168|gb|ADI77663.1| truncated internalin A [Listeria monocytogenes]
gi|298360204|gb|ADI77681.1| truncated internalin A [Listeria monocytogenes]
gi|298360210|gb|ADI77684.1| truncated internalin A [Listeria monocytogenes]
gi|298360224|gb|ADI77691.1| truncated internalin A [Listeria monocytogenes]
gi|298360248|gb|ADI77703.1| truncated internalin A [Listeria monocytogenes]
gi|298360250|gb|ADI77704.1| truncated internalin A [Listeria monocytogenes]
gi|298360272|gb|ADI77715.1| truncated internalin A [Listeria monocytogenes]
gi|298360308|gb|ADI77733.1| truncated internalin A [Listeria monocytogenes]
gi|298360340|gb|ADI77749.1| truncated internalin A [Listeria monocytogenes]
gi|298360382|gb|ADI77770.1| truncated internalin A [Listeria monocytogenes]
gi|298360392|gb|ADI77775.1| truncated internalin A [Listeria monocytogenes]
gi|298360408|gb|ADI77783.1| truncated internalin A [Listeria monocytogenes]
gi|298360418|gb|ADI77788.1| truncated internalin A [Listeria monocytogenes]
gi|298360430|gb|ADI77794.1| truncated internalin A [Listeria monocytogenes]
gi|298360438|gb|ADI77798.1| truncated internalin A [Listeria monocytogenes]
gi|298360444|gb|ADI77801.1| truncated internalin A [Listeria monocytogenes]
gi|298360446|gb|ADI77802.1| truncated internalin A [Listeria monocytogenes]
gi|298360476|gb|ADI77817.1| truncated internalin A [Listeria monocytogenes]
gi|298360482|gb|ADI77820.1| truncated internalin A [Listeria monocytogenes]
gi|298360484|gb|ADI77821.1| truncated internalin A [Listeria monocytogenes]
gi|298360486|gb|ADI77822.1| truncated internalin A [Listeria monocytogenes]
gi|298360490|gb|ADI77824.1| truncated internalin A [Listeria monocytogenes]
gi|298360512|gb|ADI77835.1| truncated internalin A [Listeria monocytogenes]
gi|298360526|gb|ADI77842.1| truncated internalin A [Listeria monocytogenes]
gi|298360534|gb|ADI77846.1| truncated internalin A [Listeria monocytogenes]
gi|298360574|gb|ADI77866.1| truncated internalin A [Listeria monocytogenes]
gi|298360584|gb|ADI77871.1| truncated internalin A [Listeria monocytogenes]
gi|298360618|gb|ADI77888.1| truncated internalin A [Listeria monocytogenes]
gi|298360622|gb|ADI77890.1| truncated internalin A [Listeria monocytogenes]
gi|298360626|gb|ADI77892.1| truncated internalin A [Listeria monocytogenes]
gi|298360628|gb|ADI77893.1| truncated internalin A [Listeria monocytogenes]
gi|298360646|gb|ADI77902.1| truncated internalin A [Listeria monocytogenes]
gi|298360650|gb|ADI77904.1| truncated internalin A [Listeria monocytogenes]
gi|298360664|gb|ADI77911.1| truncated internalin A [Listeria monocytogenes]
gi|298360686|gb|ADI77922.1| truncated internalin A [Listeria monocytogenes]
gi|298360702|gb|ADI77930.1| truncated internalin A [Listeria monocytogenes]
gi|298360718|gb|ADI77938.1| truncated internalin A [Listeria monocytogenes]
gi|443428870|gb|AGC92234.1| truncated internalin A [Listeria monocytogenes]
Length = 605
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|223006796|gb|ACM69355.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|219821312|gb|ACL37786.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 311 YNNKVSDVSSLASLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 368
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|219821288|gb|ACL37770.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVKYKV 368
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 34 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 86
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 87 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 141
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 142 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 199
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 200 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 250
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 251 -NISPLAGLTALT 262
>gi|219821264|gb|ACL37754.1| internalin A [Listeria monocytogenes]
gi|219821306|gb|ACL37782.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 368
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|343423900|emb|CCD18013.1| leucine-rich repeat protein [Trypanosoma vivax Y486]
Length = 648
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 138/430 (32%), Positives = 215/430 (50%), Gaps = 64/430 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT-AQGMKAFAGLINLVK 135
L + S+L++LD + C I+D + L S+L +L IT + F+ +L
Sbjct: 131 LSELSSLRTLDLSHCTGITD--VSPLLKFSSLHTLDLSHCTGITDVSPLLMFS---SLRM 185
Query: 136 LDLERCTRIHGGLVNLKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVT 193
LD+ CT G+ N+ L KL SL + + C +++ PLS L++L++L IS C+ +T
Sbjct: 186 LDISHCT----GITNVSPLSKLSSLRTLYFLYCTGITNVSPLSELSSLRTLDISHCTGIT 241
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD--------GC 245
D ++ L L L +L+L C + + LS + +L L+L+ C D G
Sbjct: 242 D--VSPLSELSSLRMLDLSHC-TDISNVSRLSKIIALQKLDLSHCTGVTDVSPLSKMIGL 298
Query: 246 EKF--------------SKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIG 289
EK S++ SL++LNL ITD + L ++L +L+L C GI
Sbjct: 299 EKLYLSHCTGITDVPPLSELSSLRMLNLSHCTGITD--VSPLSEFSSLHTLDLSHCTGIT 356
Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLS 348
D + L+ L +L+ L+LS G + + LS L++L +++LS TGI+D S L+ LS
Sbjct: 357 D--VSPLSELSSLRTLDLSHCT-GITDVSPLSELSSLCTLDLSHCTGITDVS--PLSKLS 411
Query: 349 SLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG- 405
SL +L L ITD ++ L+ L+ L LDL ITD + L LR L +
Sbjct: 412 SLCTLELSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSGLRMLYLSHC 467
Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRH 464
+TD V + +LSSL +LNLS +TD +S L+ SL++ S T G+
Sbjct: 468 PSITD--VSPLSELSSLRMLNLSHCTGITD-----VSPLSEFSSLHILGLSHCT--GITD 518
Query: 465 LKPLKNLRSL 474
+ PL L SL
Sbjct: 519 VSPLSKLSSL 528
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 139/444 (31%), Positives = 210/444 (47%), Gaps = 77/444 (17%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
S+L++L F +C I++ + L LS+L +L IT + + L +L LDL
Sbjct: 204 SSLRTLYFLYCTGITN--VSPLSELSSLRTLDISHCTGIT--DVSPLSELSSLRMLDLSH 259
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAY 199
CT I + L ++ L+ L++ C +TD + PLS + L+ L +S C+ +TD +
Sbjct: 260 CTDI-SNVSRLSKIIALQKLDLSHCTGVTD--VSPLSKMIGLEKLYLSHCTGITD--VPP 314
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
L L L +LNL C + LS SL L+L+ C D S++ SL+ L+L
Sbjct: 315 LSELSSLRMLNLSHC-TGITDVSPLSEFSSLHTLDLSHCTGITD-VSPLSELSSLRTLDL 372
Query: 260 GF-NEITDECLVHLKGLTNLESLNLDSC-GIGD-EGLVNLTGLCNLKCLELSDTQVGSSG 316
ITD + L L++L +L+L C GI D L L+ LC L ELS G +
Sbjct: 373 SHCTGITD--VSPLSELSSLCTLDLSHCTGITDVSPLSKLSSLCTL---ELSHCT-GITD 426
Query: 317 LRHLSGLTNLESINLSF-TGISDGS-LRKLAGL--------------------SSLKSLN 354
+ LS L++L +++LS TGI+D S L +L+GL SSL+ LN
Sbjct: 427 VSPLSELSSLRTLDLSHCTGITDVSPLSELSGLRMLYLSHCPSITDVSPLSELSSLRMLN 486
Query: 355 LD-ARQITD------------------TGLAALTSLTGLTHLDLFGAR----ITD-SGAA 390
L ITD TG+ ++ L+ L+ L + G ITD S
Sbjct: 487 LSHCTGITDVSPLSEFSSLHILGLSHCTGITDVSPLSKLSSLHILGLSHCTGITDVSPLT 546
Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
+ F+ L L C G +TD V + +LSSL L+LS +TD + +S L+ L +L
Sbjct: 547 TIIGFEKLY-LSNCTG-ITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTL 600
Query: 451 NVSNSRITSAGLRHLKPLKNLRSL 474
S+ G+ + PL L SL
Sbjct: 601 YFSH----CTGITDVSPLSELSSL 620
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 85/184 (46%), Gaps = 12/184 (6%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L + S+L+ L+ + C I+D + L S+L L IT + + L +L L
Sbjct: 476 LSELSSLRMLNLSHCTGITD--VSPLSEFSSLHILGLSHCTGIT--DVSPLSKLSSLHIL 531
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDS 195
L CT I + L ++ E L + C ITD + PLS L++L++L +S C+ +TD
Sbjct: 532 GLSHCTGI-TDVSPLTTIIGFEKLYLSNCTGITD--VSPLSELSSLRTLDLSHCTGITD- 587
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
++ L L L L C + LS L SL L+L C D S++ SL
Sbjct: 588 -VSPLSKLSSLRTLYFSHC-TGITDVSPLSELSSLRTLDLLHCTGITD-VSPLSELSSLG 644
Query: 256 VLNL 259
L+
Sbjct: 645 TLDF 648
>gi|290892407|ref|ZP_06555401.1| InlA protein [Listeria monocytogenes FSL J2-071]
gi|290557973|gb|EFD91493.1| InlA protein [Listeria monocytogenes FSL J2-071]
Length = 796
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 101 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 154
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 155 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 206
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 207 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 259
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 260 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 313
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 314 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 371
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 372 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 429
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 430 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 462
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 104/359 (28%), Positives = 158/359 (44%), Gaps = 96/359 (26%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 57 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 101
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 102 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 131
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 132 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 185
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
+GL NL+ L + QV + L+ L+ LT LE +++S +SD S+ LA L++L+SL
Sbjct: 186 SGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIAT 240
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
QI+D +T L LT+LD L + G L D G +
Sbjct: 241 NNQISD-----ITPLGILTNLD---------------------ELSLNGNQLKDIGT--L 272
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
L++LT L+L+ N L +SGLT L L + ++I+ ++ PL L +LT
Sbjct: 273 ASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAGLTALT 323
>gi|167862040|gb|ACA05719.1| InlA [Listeria monocytogenes]
gi|194326153|emb|CAQ77235.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 104/359 (28%), Positives = 158/359 (44%), Gaps = 96/359 (26%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
+GL NL+ L + QV + L+ L+ LT LE +++S +SD S+ LA L++L+SL
Sbjct: 183 SGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIAT 237
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
QI+D +T L LT+LD L + G L D G +
Sbjct: 238 NNQISD-----ITPLGILTNLD---------------------ELSLNGNQLKDIGT--L 269
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
L++LT L+L+ N L +SGLT L L + ++I+ ++ PL L +LT
Sbjct: 270 ASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|219821369|gb|ACL37824.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 368
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|322952096|gb|ADX21047.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|313485065|gb|ADR53005.1| InlA [Listeria monocytogenes]
Length = 801
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|290990752|ref|XP_002678000.1| predicted protein [Naegleria gruberi]
gi|284091610|gb|EFC45256.1| predicted protein [Naegleria gruberi]
Length = 369
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 116/239 (48%), Gaps = 2/239 (0%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+S L L YL++ + + G + SK+ +LK L + N I + + + L SL +
Sbjct: 130 ISKLKELTYLDIGKNSVGRKGAKYISKMKNLKTLQIPLNNIGPNGAISISKMKQLTSLVI 189
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLR 342
I EG + + NLK L++S G G+R LS GL NL S+++S I+ +
Sbjct: 190 CWNMIDLEGFEAIARMNNLKYLKISGYYNGPEGMRLLSSGLVNLTSLDVSRNEINPEGAK 249
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
L + +L L + G+ ++ L LT LD+ I GA +++ KNL+ L
Sbjct: 250 YLGEMKNLIELRATFNIVELGGIKFISQLRNLTLLDVQSNIIESEGARFIKKLKNLKILN 309
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
+ + G +I +++ LT L++S N + + IS L LV L++S++ I G
Sbjct: 310 VSATKMNATGANYIGEMTQLTELDISYN-HFGVEGARAISRLPNLVILDISSNNIGPEG 367
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 129/281 (45%), Gaps = 30/281 (10%)
Query: 91 CIQISDGGLEH-----LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
C+ I++ GL+ + L LT L +N ++ +G K + + NL L +
Sbjct: 114 CLSINENGLKEKEAKLISKLKELTYLDIGKN-SVGRKGAKYISKMKNLKTLQIPLNNIGP 172
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
G +++ + +L SL I W N I + ++ + NLK L+IS Y G +
Sbjct: 173 NGAISISKMKQLTSLVICW-NMIDLEGFEAIARMNNLKYLKIS---------GYYNGPEG 222
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
+ LL+ S L +L L+++R +++ +G + ++ +L L FN +
Sbjct: 223 MRLLS--------------SGLVNLTSLDVSRNEINPEGAKYLGEMKNLIELRATFNIVE 268
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
+ + L NL L++ S I EG + L NLK L +S T++ ++G ++ +T
Sbjct: 269 LGGIKFISQLRNLTLLDVQSNIIESEGARFIKKLKNLKILNVSATKMNATGANYIGEMTQ 328
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
L +++S+ R ++ L +L L++ + I G A
Sbjct: 329 LTELDISYNHFGVEGARAISRLPNLVILDISSNNIGPEGAA 369
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 87/387 (22%), Positives = 158/387 (40%), Gaps = 46/387 (11%)
Query: 22 EVSLEAFRDCALQDLCLGQY-------------PGVNDKWMDVIASQGSSLLSVDLSGSD 68
EVS+ F D L D + + P ++ +W + +Q S L +D
Sbjct: 11 EVSIRNFSDNFLPDDIIHEIMSFLTGWEILKYCPLISKQWTYFLINQYSKL-CLDFH-QI 68
Query: 69 VTDSGLIHLKDCSNLQSL---DFNFCIQISDGG-LEHLRGLSNLTSLSFRRNNAITAQGM 124
+ + + HL++ L S+ N+ I D L L + NLT LS N + +
Sbjct: 69 IQEERVQHLRNSQVLNSIRNVKVNYANLIRDKQFLTVLSLMKNLTCLSINEN-GLKEKEA 127
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
K + L L LD+ + N + K +S + NLK+
Sbjct: 128 KLISKLKELTYLDIGK-------------------------NSVGRKGAKYISKMKNLKT 162
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
LQI + + +G + +++LT L + + ++++ + +L YL ++ +G
Sbjct: 163 LQIPLNNIGPNGAISISKMKQLTSLVICWNMIDLEGFEAIARMNNLKYLKISGYYNGPEG 222
Query: 245 CEKFSK-IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
S + +L L++ NEI E +L + NL L + G+ ++ L NL
Sbjct: 223 MRLLSSGLVNLTSLDVSRNEINPEGAKYLGEMKNLIELRATFNIVELGGIKFISQLRNLT 282
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
L++ + S G R + L NL+ +N+S T ++ + ++ L L++
Sbjct: 283 LLDVQSNIIESEGARFIKKLKNLKILNVSATKMNATGANYIGEMTQLTELDISYNHFGVE 342
Query: 364 GLAALTSLTGLTHLDLFGARITDSGAA 390
G A++ L L LD+ I GAA
Sbjct: 343 GARAISRLPNLVILDISSNNIGPEGAA 369
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 73/155 (47%)
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
LS + NL ++++ G+ + + ++ L L L++ + G ++ + L L +
Sbjct: 106 LSLMKNLTCLSINENGLKEKEAKLISKLKELTYLDIGKNSVGRKGAKYISKMKNLKTLQI 165
Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
I +GA + K L SL IC + G + I +++L L +S N +
Sbjct: 166 PLNNIGPNGAISISKMKQLTSLVICWNMIDLEGFEAIARMNNLKYLKISGYYNGPEGMRL 225
Query: 440 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
L SGL L SL+VS + I G ++L +KNL L
Sbjct: 226 LSSGLVNLTSLDVSRNEINPEGAKYLGEMKNLIEL 260
>gi|150371726|dbj|BAF65678.1| internalin A [Listeria monocytogenes]
gi|194326151|emb|CAQ77234.1| internalin A [Listeria monocytogenes]
gi|298360180|gb|ADI77669.1| internalin A [Listeria monocytogenes]
gi|298360390|gb|ADI77774.1| internalin A [Listeria monocytogenes]
gi|298360416|gb|ADI77787.1| internalin A [Listeria monocytogenes]
gi|298360620|gb|ADI77889.1| internalin A [Listeria monocytogenes]
gi|298360656|gb|ADI77907.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 104/359 (28%), Positives = 158/359 (44%), Gaps = 96/359 (26%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 129 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 182
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
+GL NL+ L + QV + L+ L+ LT LE +++S +SD S+ LA L++L+SL
Sbjct: 183 SGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIAT 237
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
QI+D +T L LT+LD L + G L D G +
Sbjct: 238 NNQISD-----ITPLGILTNLD---------------------ELSLNGNQLKDIGT--L 269
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
L++LT L+L+ N L +SGLT L L + ++I+ ++ PL L +LT
Sbjct: 270 ASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|112959500|gb|ABI27277.1| internalin A [Listeria monocytogenes]
gi|112959502|gb|ABI27278.1| internalin A [Listeria monocytogenes]
gi|112959510|gb|ABI27282.1| internalin A [Listeria monocytogenes]
gi|112959512|gb|ABI27283.1| internalin A [Listeria monocytogenes]
gi|112959524|gb|ABI27289.1| internalin A [Listeria monocytogenes]
gi|112959530|gb|ABI27292.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 247
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 248 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 305
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 306 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 363
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 364 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 29 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 81
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 82 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 136
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 137 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 194
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 195 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 245
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 246 -NISPLAGLTALT 257
>gi|326430775|gb|EGD76345.1| variable lymphocyte receptor [Salpingoeca sp. ATCC 50818]
Length = 1124
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 112/413 (27%), Positives = 169/413 (40%), Gaps = 47/413 (11%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKA--FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
GLS LT+L+ R + Q + A F GL +L +LDL GL +ESLN
Sbjct: 229 GLSALTTLNLNR---VPLQTLSAQTFQGLSSLTELDLSNKKIAAIPTQAFVGLSSIESLN 285
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
++ N ++ +S + L SL +S +T L L + L+G P+
Sbjct: 286 LQG-NPLSKLSEGAISDMPKLTSLDLSNLAITAIPARSFDNLAALGNITLQGNPIAQLTN 344
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
S S++ SL L+L+RC+L+ F+ L L L N IT L+GL+ L +
Sbjct: 345 ASFSSVPSLHTLDLSRCKLTSVPAAAFTAATRLSALTLARNAITTIAARALRGLSKLTAF 404
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
++ + L+ L S Q GLT+L ++NL+ T +
Sbjct: 405 DISNNP--------------LRALPASIFQ----------GLTSLATLNLAHTNCTLLPP 440
Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
L L +L S++ + L L HLDL ARIT L N L L
Sbjct: 441 ALLTPLHALTSISAAGTPLRAIATGTFDGLPALQHLDLSNARITALAPHSLHNLPRLHDL 500
Query: 402 EICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
+ G L + + DLSSLT L+LS + +SG T L +L + ++ IT+
Sbjct: 501 ALGGNPLANISSHALGGDLSSLTTLDLSA-LRIAAIAPHAMSGATNLTTLLLDHNAITAL 559
Query: 461 GLRHLKPLKNLRSLTLESCKVTAN---------------DIKRLQSRDLPNLV 498
L L +L + S A D+ RL +LP+ V
Sbjct: 560 AADTFAGLSRLATLRITSNPALATLAGGAFDGLSALATLDLSRLPVAELPSHV 612
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 110/428 (25%), Positives = 176/428 (41%), Gaps = 27/428 (6%)
Query: 75 IHLKDCSNLQSLDF--NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132
+ D + + LDF N +S ++ L + + NN IT+ AFA L
Sbjct: 76 LQFDDGTPIAQLDFSNNLISMVSAAAFQNAVSLQHTLTALILDNNPITSIEAGAFATLTA 135
Query: 133 LVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L L++ ++ G L N+ + N + GLT+L+SL ++ +
Sbjct: 136 LNHLNMSSL-KLAGALSGNMFSTLTALLTLQLDGNQLDTLPANAFDGLTSLQSLNLANNP 194
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
++ +GL L L+L G P++ S + L +L LNLNR L + F +
Sbjct: 195 ISILNADTFQGLSSLLSLSLAGAPISTLSSSSFAGLSALTTLNLNRVPLQTLSAQTFQGL 254
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
SL L+L +I GL+++ESLNL + ++ + L L+LS+
Sbjct: 255 SSLTELDLSNKKIAAIPTQAFVGLSSIESLNLQGNPLSKLSEGAISDMPKLTSLDLSNLA 314
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
+ + R L L +I L I+ + + + SL +L+L ++T AA T+
Sbjct: 315 ITAIPARSFDNLAALGNITLQGNPIAQLTNASFSSVPSLHTLDLSRCKLTSVPAAAFTAA 374
Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ-N 430
T L+ L L IT A LR L + +I L + L+SL LNL+ N
Sbjct: 375 TRLSALTLARNAITTIAARALRGLSKLTAFDISNNPLRALPASIFQGLTSLATLNLAHTN 434
Query: 431 C-----------------NLTDKTLELIS-----GLTGLVSLNVSNSRITSAGLRHLKPL 468
C + L I+ GL L L++SN+RIT+ L L
Sbjct: 435 CTLLPPALLTPLHALTSISAAGTPLRAIATGTFDGLPALQHLDLSNARITALAPHSLHNL 494
Query: 469 KNLRSLTL 476
L L L
Sbjct: 495 PRLHDLAL 502
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 84/344 (24%), Positives = 138/344 (40%), Gaps = 35/344 (10%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKV--TDSGIAYLKGLQKLTLLNLEGCPVT---AAC 220
N IT +GL+ L +L+I+ + T +G A+ GL L L+L PV +
Sbjct: 554 NAITALAADTFAGLSRLATLRITSNPALATLAGGAF-DGLSALATLDLSRLPVAELPSHV 612
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
+S+L S+ ++ L + S + ++ + + + + L LT S
Sbjct: 613 FAGMSSLQSVVLTGVDLHTLQPNAFANLSHVAAISLAGMSLSSLPSHAFGALPALT---S 669
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDG 339
L+LD+ + G L + + + R SG T + S+NL+ I+
Sbjct: 670 LSLDNNPLASLNTDTFAGPLPLLTTLDLSSHGITALPPRTFSGATAVRSLNLAHNAITTI 729
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
+ GLSS L L I + L LT LDL + +T + NL
Sbjct: 730 APDAFLGLSSATQLVLAGNPIAHVSAGSFAGLGALTSLDLSTSALTGIVSGSFSGLANLT 789
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC--NLTD---------KTLEL-------- 440
+L + L LSSL L+++ C L D +TL L
Sbjct: 790 TLTVDTPHLRHLFPGSFTGLSSLHHLSIANTCVTALPDGVLSPLVHVRTLSLRNSSLAGA 849
Query: 441 ------ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 478
GL+ LV+L++SN+ +T+ G + +PL R+L L S
Sbjct: 850 AVSTLTFDGLSQLVALDLSNNDMTAIGDKAFRPLSATRTLNLSS 893
Score = 38.1 bits (87), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 92/219 (42%), Gaps = 7/219 (3%)
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+NAIT AF GL + +L L H + GL L SL++ + +T
Sbjct: 723 HNAITTIAPDAFLGLSSATQLVLAGNPIAHVSAGSFAGLGALTSLDLS-TSALTGIVSGS 781
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
SGL NL +L + + GL L L++ VTA LS L + L+L
Sbjct: 782 FSGLANLTTLTVDTPHLRHLFPGSFTGLSSLHHLSIANTCVTALPDGVLSPLVHVRTLSL 841
Query: 236 NRCQLSDDGCE--KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
L+ F + L L+L N++T + L+ +LNL S +G+
Sbjct: 842 RNSSLAGAAVSTLTFDGLSQLVALDLSNNDMTAIGDKAFRPLSATRTLNLSSNALGNFTQ 901
Query: 294 VN---LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
G+ L+ L+LS S+ +L+ L++L S+
Sbjct: 902 AASHVFKGMKALQVLDLSSNPF-STPPANLASLSSLRSV 939
>gi|322952092|gb|ADX21045.1| internalin A [Listeria monocytogenes]
gi|322952094|gb|ADX21046.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|112961640|gb|ABI28446.1| truncated internalin A [Listeria monocytogenes]
gi|112961643|gb|ABI28448.1| truncated internalin A [Listeria monocytogenes]
gi|112961661|gb|ABI28460.1| truncated internalin A [Listeria monocytogenes]
Length = 556
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 261
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 262 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 319
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 320 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 377
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 378 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 41 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 96
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 97 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 149
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 150 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 205
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 206 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 259
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 260 ----NISPLAGLTALT 271
>gi|421888173|ref|ZP_16319281.1| leucine-rich-repeat type III effector protein (GALA4) [Ralstonia
solanacearum K60-1]
gi|378966462|emb|CCF96029.1| leucine-rich-repeat type III effector protein (GALA4) [Ralstonia
solanacearum K60-1]
Length = 466
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 93/321 (28%), Positives = 144/321 (44%), Gaps = 32/321 (9%)
Query: 168 ITDSDMKPLSGLTNLKSLQIS--CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+D+D++ L +L+ L +S +T +GIA L L L L++ GC + A L+
Sbjct: 138 FSDADLQRLP--PSLRELDLSQCTGPITAAGIARLLAL-PLDRLDVGGCRLNADSARLLA 194
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
+L L++ R + D G F++ L LN N I + L T + +L++
Sbjct: 195 GHPTLTALDIRRNAIGDAGVAAFARNKKLTALNASSNGIGPAGVRALAANTTIATLDISD 254
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
IGDEG L G L L+ SD+ +G G R L+ L S++LS+ I L
Sbjct: 255 NEIGDEGARALAGHTALTKLDASDSGIGPEGTRALATSMTLASLDLSYNEIGAEGAEALG 314
Query: 346 GLSSLKSL------------------------NLDARQITDTGLAALTSLTGLTHLDLFG 381
++L +L +L + I G A + T LT L+L
Sbjct: 315 ENTTLTTLHVCGNALGHREAALLAASATLTTLDLSSNAIGSAGARAFGTNTTLTKLNLSN 374
Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
I + +A+ N K L L+I + DA + + D +LT LN S N + D +
Sbjct: 375 NGI-ERVSAWANNSK-LTKLDISNNRIGDAAAQVLADSRTLTTLNASSN-RIGDAGASAL 431
Query: 442 SGLTGLVSLNVSNSRITSAGL 462
+G T L +LNVS +RI AGL
Sbjct: 432 AGNTTLATLNVSFNRIGEAGL 452
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 131/278 (47%), Gaps = 12/278 (4%)
Query: 209 LNLEGC--PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
L+L C P+TAA + L AL L L++ C+L+ D + +L L++ N I D
Sbjct: 153 LDLSQCTGPITAAGIARLLAL-PLDRLDVGGCRLNADSARLLAGHPTLTALDIRRNAIGD 211
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
+ L +LN S GIG G+ L + L++SD ++G G R L+G T L
Sbjct: 212 AGVAAFARNKKLTALNASSNGIGPAGVRALAANTTIATLDISDNEIGDEGARALAGHTAL 271
Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
++ S +GI R LA +L SL+L +I G AL T LT L + G +
Sbjct: 272 TKLDASDSGIGPEGTRALATSMTLASLDLSYNEIGAEGAEALGENTTLTTLHVCGNALGH 331
Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL-- 444
AA L L +L++ + AG + ++LT LNLS N +E +S
Sbjct: 332 REAALLAASATLTTLDLSSNAIGSAGARAFGTNTTLTKLNLSNNG------IERVSAWAN 385
Query: 445 -TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
+ L L++SN+RI A + L + L +L S ++
Sbjct: 386 NSKLTKLDISNNRIGDAAAQVLADSRTLTTLNASSNRI 423
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 134/310 (43%), Gaps = 36/310 (11%)
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKL-----ESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L +LDL +CT G + G+ +L + L++ C DS + L+G L +L I
Sbjct: 150 LRELDLSQCT----GPITAAGIARLLALPLDRLDVGGCRLNADS-ARLLAGHPTLTALDI 204
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
+ + D+G+A +KLT LN + A + +L+A ++ L+++ ++ D+G
Sbjct: 205 RRNAIGDAGVAAFARNKKLTALNASSNGIGPAGVRALAANTTIATLDISDNEIGDEGARA 264
Query: 248 F-------------SKIG-----------SLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
S IG +L L+L +NEI E L T L +L++
Sbjct: 265 LAGHTALTKLDASDSGIGPEGTRALATSMTLASLDLSYNEIGAEGAEALGENTTLTTLHV 324
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
+G L L L+LS +GS+G R T L +NLS GI +
Sbjct: 325 CGNALGHREAALLAASATLTTLDLSSNAIGSAGARAFGTNTTLTKLNLSNNGIE--RVSA 382
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
A S L L++ +I D L LT L+ RI D+GA+ L L +L +
Sbjct: 383 WANNSKLTKLDISNNRIGDAAAQVLADSRTLTTLNASSNRIGDAGASALAGNTTLATLNV 442
Query: 404 CGGGLTDAGV 413
+ +AG+
Sbjct: 443 SFNRIGEAGL 452
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 119/282 (42%), Gaps = 23/282 (8%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ A + AG L LD+ R G+ KL +LN N I + ++ L+
Sbjct: 185 LNADSARLLAGHPTLTALDIRRNAIGDAGVAAFARNKKLTALNAS-SNGIGPAGVRALAA 243
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
T + +L IS +++ D G L G LT L+ + +L+ +L L+L+
Sbjct: 244 NTTIATLDISDNEIGDEGARALAGHTALTKLDASDSGIGPEGTRALATSMTLASLDLSYN 303
Query: 239 QLSDDGCEKFSKIGSLKVLN-----LGFNEITDECLVHLKGLTNLESLNLDSCG------ 287
++ +G E + +L L+ LG E +L S + S G
Sbjct: 304 EIGAEGAEALGENTTLTTLHVCGNALGHREAALLAASATLTTLDLSSNAIGSAGARAFGT 363
Query: 288 --------IGDEGLVNLTGLCN---LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
+ + G+ ++ N L L++S+ ++G + + L+ L ++N S I
Sbjct: 364 NTTLTKLNLSNNGIERVSAWANNSKLTKLDISNNRIGDAAAQVLADSRTLTTLNASSNRI 423
Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
D LAG ++L +LN+ +I + GL AL + T L L+
Sbjct: 424 GDAGASALAGNTTLATLNVSFNRIGEAGLLALEANTTLKKLE 465
>gi|313485075|gb|ADR53008.1| InlA [Listeria monocytogenes]
Length = 800
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|219821297|gb|ACL37776.1| internalin A [Listeria monocytogenes]
gi|219821303|gb|ACL37780.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 368
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|71754651|ref|XP_828240.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70833626|gb|EAN79128.1| hypothetical protein Tb11.53.0001 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 1399
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 128/491 (26%), Positives = 210/491 (42%), Gaps = 83/491 (16%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI---- 119
LS + + D + H+ +C +L +L+ FC I+D + LSN+T L R N
Sbjct: 804 LSNTRINDENIRHISECKSLNTLNLAFCNDITD-----ITALSNITML--RELNIDWCFN 856
Query: 120 TAQGMKAFAGLINLVKLDLERC------TRIHGGLVNLKGLMKLESLNIKWCNCI----- 168
+G++A L L +LD ++C + + K L+KL N + C+
Sbjct: 857 IEKGVEALGKLPKLRELDAKKCGTSVRWMQQYPYNTLFKSLVKLNLENGRESFCVGTLSS 916
Query: 169 -------------TDSDMKPLSGLTNLKSLQISCSKVTD---SGIAYLKGLQKLTLLNLE 212
+ P+S L L+ L + +V D GI+ K LQ L N+
Sbjct: 917 TAIVEELLLGRACEPYHLPPISSLRRLRVLNLDDGRVCDIWLEGISQSKSLQSL---NVS 973
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
C + +LS+L +L LN+N C G E F + L+V L +T+E + L
Sbjct: 974 NCNYITD-ISALSSLSTLEELNVNCCDRIRKGWEAFEALTRLRVATLSVTWVTNEGIRLL 1032
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-----------VGSSGLRHLS 321
G NL +L L CG + N+ + N+K LE Q VG +
Sbjct: 1033 SGCKNLRNLELYCCG----DVSNIEPINNIKSLEELTIQNCHNINEGLLKVGMLPRLRVL 1088
Query: 322 GLTNLESINLSFTGISDGS---------------LRKLAGLSSLKSLNLDA--RQITDTG 364
L L+S S + + + ++ ++ +++LK L + R + D G
Sbjct: 1089 VLRKLQSTYFSLSSLGESKSLVKLTIEGPEELCDIKLISNIATLKELKIAHGDRLLNDVG 1148
Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424
L L L L L + ++ + ++L+SL+I + HI +L++L
Sbjct: 1149 --DLGKLPWLHVLTLSHFNMGNTCFESVCKIRSLKSLDI-THSFELPDIYHISNLTALEE 1205
Query: 425 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI-TSAGLRHLKPLKNLRSLTLESCKVT- 482
LNLS C E ++ L L LN+S++R+ TS G ++ K+L +L LESC +T
Sbjct: 1206 LNLS-GCYHIISGWEALTALPRLRVLNLSSTRVTTSYGGYYISRCKSLITLNLESCDMTD 1264
Query: 483 ---ANDIKRLQ 490
DIK L+
Sbjct: 1265 ASCLADIKTLE 1275
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 127/517 (24%), Positives = 200/517 (38%), Gaps = 122/517 (23%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS + +TD + H C L +LD +FC ++ D + LSN+T+L
Sbjct: 590 LSNTHITDRDISHFSKCKELVTLDLSFCDELFD-----ITSLSNITTLE----------- 633
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC------------------ 165
L+L+ C++I GL L L +L LN+K
Sbjct: 634 -----------DLNLDNCSKIRKGLSVLGELPRLRVLNVKGVHLTNSVIGSLGNGKSFVK 682
Query: 166 ----NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV----- 216
NC SD+ LS L+ LK L + SGI L L +L +L+L +
Sbjct: 683 LILDNCKGLSDVTFLSSLSTLKELNLHHCDAVTSGIGTLGRLLQLRVLDLGWTKIDNNSL 742
Query: 217 --TAAC-----------------LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
AC + ++++L +L LN++ C G F + L+V
Sbjct: 743 EDICACSSPLVSLNLSHCKEITSISAIASLNALEKLNIDNCCHVTSGWNVFGTLHQLRVA 802
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG---S 314
L I DE + H+ +L +LNL C + ++T L N+ L +
Sbjct: 803 VLSNTRINDENIRHISECKSLNTLNLAFCN----DITDITALSNITMLRELNIDWCFNIE 858
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAG---LSSLKSLNLD--------------- 356
G+ L L L ++ G S +++ SL LNL+
Sbjct: 859 KGVEALGKLPKLRELDAKKCGTSVRWMQQYPYNTLFKSLVKLNLENGRESFCVGTLSSTA 918
Query: 357 -------ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409
R L ++SL L L+L R+ D + K+L+SL +
Sbjct: 919 IVEELLLGRACEPYHLPPISSLRRLRVLNLDDGRVCDIWLEGISQSKSLQSLNV------ 972
Query: 410 DAGVKHIKDLSSL----TLLNLSQN-CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
+ +I D+S+L TL L+ N C+ K E LT L +S + +T+ G+R
Sbjct: 973 -SNCNYITDISALSSLSTLEELNVNCCDRIRKGWEAFEALTRLRVATLSVTWVTNEGIRL 1031
Query: 465 LKPLKNLRSLTLESCKVTA-----NDIKRLQSRDLPN 496
L KNLR+L L C + N+IK L+ + N
Sbjct: 1032 LSGCKNLRNLELYCCGDVSNIEPINNIKSLEELTIQN 1068
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 113/428 (26%), Positives = 184/428 (42%), Gaps = 67/428 (15%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+NL+ L+FN+ I D +E + + L+ LS N++T + + L L +L+L
Sbjct: 228 TNLKCLEFNY-TSIDDSCIEEICECATLSKLSVSECNSLT--DVTPISQLAALEELNLSN 284
Query: 141 CTRIHGG------------------------LVNLKGLMKLESLNIKWCNCITDSDMKPL 176
C I G L +L LE LN+ +CI +D+ PL
Sbjct: 285 CYHITKGIGALVRLLRLRALDLSGVSVEDNFLKDLCDCGPLERLNLS--HCIQLTDINPL 342
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
S T ++ L ++ C ++T GI+ + L KL +L+++ ++ + LDS+ SL L++
Sbjct: 343 SNATAIQELNLNRCHRITQ-GISVVWELPKLRVLHMKDMHLSESSLDSVGTSESLVKLSI 401
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
C GF ++T L LE LN+ C G+
Sbjct: 402 ENCA--------------------GFGDMT-----LLSSFVALEELNIQKCADIISGVGC 436
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLN 354
L L L+ L + + + S G + +L + + S TG+SD + LA + +L+ L+
Sbjct: 437 LGTLPYLRVLNIKEAHISSIGFTGIGASKSLLQLTIESTTGLSD--VEALANILTLEKLS 494
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF---KNLRSLEICGGGLTDA 411
L D G+ L +L L LDL G T++ + LR + + SL +
Sbjct: 495 LLGCNGIDAGIGCLGNLPQLKVLDLSG---TNTDSDSLRGLCVSQTIVSLNL-SHCWKVT 550
Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 471
V HI L +L LNLS +C + E + L L +SN+ IT + H K L
Sbjct: 551 SVFHISALETLNELNLS-DCIRINAGWEALEKLQQLHVAILSNTHITDRDISHFSKCKEL 609
Query: 472 RSLTLESC 479
+L L C
Sbjct: 610 VTLDLSFC 617
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 108/410 (26%), Positives = 191/410 (46%), Gaps = 28/410 (6%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
++ D LE + +L SL+ N IT + A + L L +L++ C RI G +
Sbjct: 952 RVCDIWLEGISQSKSLQSLNVSNCNYIT--DISALSSLSTLEELNVNCCDRIRKGWEAFE 1009
Query: 153 GLMKLE--SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
L +L +L++ W +T+ ++ LSG NL++L++ C S I + ++ L L
Sbjct: 1010 ALTRLRVATLSVTW---VTNEGIRLLSGCKNLRNLELYCCGDV-SNIEPINNIKSLEELT 1065
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECL 269
++ C L + L L L L + Q + + SL L + G E+ D
Sbjct: 1066 IQNCHNINEGLLKVGMLPRLRVLVLRKLQSTYFSLSSLGESKSLVKLTIEGPEELCD--- 1122
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTG----LCNLKCLELSDTQVGSSGLRHLSGLTN 325
+K ++N+ +L GD L+N G L L L LS +G++ + + +
Sbjct: 1123 --IKLISNIATLKELKIAHGDR-LLNDVGDLGKLPWLHVLTLSHFNMGNTCFESVCKIRS 1179
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L+S++++ + + ++ L++L+ LNL +G ALT+L L L+L R+T
Sbjct: 1180 LKSLDITHS-FELPDIYHISNLTALEELNLSGCYHIISGWEALTALPRLRVLNLSSTRVT 1238
Query: 386 DS-GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 444
S G Y+ K+L +L + +TDA + D+ +L L++ + C + + L
Sbjct: 1239 TSYGGYYISRCKSLITLNLESCDMTDASC--LADIKTLEELHIGK-CEELTRGFSALFTL 1295
Query: 445 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI---KRLQS 491
L LN+ +S IT LR ++ + L L CK NDI +R++S
Sbjct: 1296 PQLRILNLMDSLITDEDLREIQLSHTIEDLNLSYCK-ELNDITPVRRIKS 1344
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 127/478 (26%), Positives = 213/478 (44%), Gaps = 62/478 (12%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
V D W++ I SQ SL S+++S + +TD + L S L+ L+ N C +I G E
Sbjct: 953 VCDIWLEGI-SQSKSLQSLNVSNCNYITD--ISALSSLSTLEELNVNCCDRIRKG-WEAF 1008
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L+ L + +T +G++ +G NL L+L C + + + + LE L I
Sbjct: 1009 EALTRLRVATLSVT-WVTNEGIRLLSGCKNLRNLELYCCGDV-SNIEPINNIKSLEELTI 1066
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG----CPVTA 218
+ C+ I + +K + L L+ L + + T ++ L + L L +EG C +
Sbjct: 1067 QNCHNINEGLLK-VGMLPRLRVLVLRKLQSTYFSLSSLGESKSLVKLTIEGPEELCDIKL 1125
Query: 219 AC----------------LDSLSALGSLFYLN---LNRCQLSDDGCEKFSKIGSLKVLNL 259
L+ + LG L +L+ L+ + + E KI SLK L++
Sbjct: 1126 ISNIATLKELKIAHGDRLLNDVGDLGKLPWLHVLTLSHFNMGNTCFESVCKIRSLKSLDI 1185
Query: 260 GFN-EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS-GL 317
+ E+ D + H+ LT LE LNL C G LT L L+ L LS T+V +S G
Sbjct: 1186 THSFELPD--IYHISNLTALEELNLSGCYHIISGWEALTALPRLRVLNLSSTRVTTSYGG 1243
Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
++S +L ++NL ++D S LA + +L+ L++ + G +AL +L L L
Sbjct: 1244 YYISRCKSLITLNLESCDMTDASC--LADIKTLEELHIGKCEELTRGFSALFTLPQLRIL 1301
Query: 378 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
+L + ITD ++LR +++ I+DL NLS L D T
Sbjct: 1302 NLMDSLITD---------EDLREIQLS---------HTIEDL------NLSYCKELNDIT 1337
Query: 438 -LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL 494
+ I + + S R G R L L L + +++ V+ + K L+ R +
Sbjct: 1338 PVRRIKSIKKMDLHRSSEGRGLREGFRSLLELPCLSWVDIKNANVSFDVYKELKERKV 1395
>gi|224124658|ref|XP_002330078.1| predicted protein [Populus trichocarpa]
gi|222871503|gb|EEF08634.1| predicted protein [Populus trichocarpa]
Length = 1228
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 105/320 (32%), Positives = 149/320 (46%), Gaps = 25/320 (7%)
Query: 83 LQSLD--FNFCIQISDG-GLEHLRG-LSNLTSLSFRRNNAITAQG-MKAFAGLINLVKLD 137
LQSLD +N + S+ G E L L L L RN +G + F GL L LD
Sbjct: 97 LQSLDLSYNGLVGCSENEGFEVLSSKLRKLEVLDLTRNRFNNDKGILSCFNGLSALKSLD 156
Query: 138 LERCTRIHGGLVNLKG-LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
L GL L L KLE+L++ C DS ++G ++LKSL +S ++VT SG
Sbjct: 157 LSDNQLTGSGLKVLSSRLKKLENLHLSANQC-NDSIFSSITGFSSLKSLDLSYNEVTGSG 215
Query: 197 IAYLKG-LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
+ L L++L L+L + SL+ SL LNL+ QL+ K G
Sbjct: 216 LKVLSSRLKRLENLDLSDNQCNDSIFSSLTGFSSLKSLNLSYNQLTGSSMVSIEKNGYYS 275
Query: 256 VLNL--------GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
L + V + GL NLE L+L S + + L +L+G LK L+L
Sbjct: 276 FLQYTKWILPLYPSDNFLSGFQVLVSGLRNLEELHLYSNKLNNNILSSLSGFSTLKSLDL 335
Query: 308 SDTQV-GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
S + GS+GL+ GL NLE + L F ++ L L+G S+LKSL+L + T +
Sbjct: 336 SYNKFTGSTGLK---GLRNLEELYLGFNKFNNSILSSLSGFSTLKSLDLSNNKFTGS--- 389
Query: 367 ALTSLTGLTHLDLFGARITD 386
L GL +L+ TD
Sbjct: 390 --IGLKGLRNLETLNLEYTD 407
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 108/371 (29%), Positives = 172/371 (46%), Gaps = 56/371 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLI----HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
S+L S+DLS + +T SGL LK NL L N C +D + G S+L SL
Sbjct: 150 SALKSLDLSDNQLTGSGLKVLSSRLKKLENLH-LSANQC---NDSIFSSITGFSSLKSLD 205
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
N +T G+K + L +LE+L++ C DS
Sbjct: 206 LSYN-EVTGSGLKVLS-----------------------SRLKRLENLDLSDNQC-NDSI 240
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-------- 224
L+G ++LKSL +S +++T S + ++ + L + D+
Sbjct: 241 FSSLTGFSSLKSLNLSYNQLTGSSMVSIEKNGYYSFLQYTKWILPLYPSDNFLSGFQVLV 300
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
S L +L L+L +L+++ S +LK L+L +N+ T LKGL NLE L L
Sbjct: 301 SGLRNLEELHLYSNKLNNNILSSLSGFSTLKSLDLSYNKFTGS--TGLKGLRNLEELYLG 358
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQV-GSSGLRHLSGLTNLESINLSFTGISDGSL-R 342
+ L +L+G LK L+LS+ + GS GL+ GL NLE++NL +T + L
Sbjct: 359 FNKFNNSILSSLSGFSTLKSLDLSNNKFTGSIGLK---GLRNLETLNLEYTDFKESILIE 415
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
L L SLK+L + G L++ + L + L+ + + A++LRN +L +L+
Sbjct: 416 SLGALPSLKTLYASYSKFKHFG-KGLSNSSSLEEVFLYYSYLP---ASFLRNIGHLSTLK 471
Query: 403 ICGGGLTDAGV 413
+ L+ AGV
Sbjct: 472 V----LSLAGV 478
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 104/204 (50%), Gaps = 10/204 (4%)
Query: 290 DEGLVN-LTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGL 347
D+G+++ GL LK L+LSD Q+ SGL+ LS L LE+++LS +D + G
Sbjct: 139 DKGILSCFNGLSALKSLDLSDNQLTGSGLKVLSSRLKKLENLHLSANQCNDSIFSSITGF 198
Query: 348 SSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
SSLKSL+L ++T +GL L+S L L +LDL + DS + L F +L+SL +
Sbjct: 199 SSLKSLDLSYNEVTGSGLKVLSSRLKRLENLDLSDNQCNDSIFSSLTGFSSLKSLNLSYN 258
Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNC-------NLTDKTLELISGLTGLVSLNVSNSRITS 459
LT + + I+ + L ++ N L+SGL L L++ ++++ +
Sbjct: 259 QLTGSSMVSIEKNGYYSFLQYTKWILPLYPSDNFLSGFQVLVSGLRNLEELHLYSNKLNN 318
Query: 460 AGLRHLKPLKNLRSLTLESCKVTA 483
L L L+SL L K T
Sbjct: 319 NILSSLSGFSTLKSLDLSYNKFTG 342
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 8/149 (5%)
Query: 49 MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL 108
V+ S +L + L + + ++ L L S L+SLD ++ GL+ LR L L
Sbjct: 296 FQVLVSGLRNLEELHLYSNKLNNNILSSLSGFSTLKSLDLSYNKFTGSTGLKGLRNLEEL 355
Query: 109 TSLSFRR-NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 167
L F + NN+I + + +G L LDL G + LKGL LE+LN+++ +
Sbjct: 356 Y-LGFNKFNNSI----LSSLSGFSTLKSLDLS--NNKFTGSIGLKGLRNLETLNLEYTDF 408
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
++ L L +LK+L S SK G
Sbjct: 409 KESILIESLGALPSLKTLYASYSKFKHFG 437
>gi|112961610|gb|ABI28426.1| internalin A [Listeria monocytogenes]
gi|112961613|gb|ABI28428.1| internalin A [Listeria monocytogenes]
gi|112961625|gb|ABI28436.1| internalin A [Listeria monocytogenes]
gi|112961628|gb|ABI28438.1| internalin A [Listeria monocytogenes]
gi|112961631|gb|ABI28440.1| internalin A [Listeria monocytogenes]
gi|112961634|gb|ABI28442.1| internalin A [Listeria monocytogenes]
gi|112961670|gb|ABI28466.1| internalin A [Listeria monocytogenes]
gi|112961673|gb|ABI28468.1| internalin A [Listeria monocytogenes]
gi|112961676|gb|ABI28470.1| internalin A [Listeria monocytogenes]
gi|112961688|gb|ABI28478.1| internalin A [Listeria monocytogenes]
gi|112961703|gb|ABI28488.1| internalin A [Listeria monocytogenes]
gi|112961712|gb|ABI28494.1| internalin A [Listeria monocytogenes]
gi|112961715|gb|ABI28496.1| internalin A [Listeria monocytogenes]
gi|112961724|gb|ABI28502.1| internalin A [Listeria monocytogenes]
gi|112961733|gb|ABI28508.1| internalin A [Listeria monocytogenes]
gi|112961736|gb|ABI28510.1| internalin A [Listeria monocytogenes]
gi|112961739|gb|ABI28512.1| internalin A [Listeria monocytogenes]
gi|112961742|gb|ABI28514.1| internalin A [Listeria monocytogenes]
gi|112961745|gb|ABI28516.1| internalin A [Listeria monocytogenes]
gi|112961754|gb|ABI28522.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 261
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 262 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 319
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 320 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 377
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 378 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 43 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 95
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 96 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 150
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 151 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 208
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 209 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 259
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 260 -NISPLAGLTALT 271
>gi|85679218|gb|ABC72025.1| InlA [Listeria monocytogenes]
gi|85679232|gb|ABC72032.1| InlA [Listeria monocytogenes]
Length = 794
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 203 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 255
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 256 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 309
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 310 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 367
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 368 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 425
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 426 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 458
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 104/359 (28%), Positives = 158/359 (44%), Gaps = 96/359 (26%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 53 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 97
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 98 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 127
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q++D + + +L L L N+ITD + LK LTNL L L S I D + L
Sbjct: 128 NNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 181
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
+GL NL+ L + QV + L+ L+ LT LE +++S +SD S+ LA L++L+SL
Sbjct: 182 SGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIAT 236
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
QI+D +T L LT+LD L + G L D G +
Sbjct: 237 NNQISD-----ITPLGILTNLD---------------------ELSLNGNQLKDIGT--L 268
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
L++LT L+L+ N L +SGLT L L + ++I+ ++ PL L +LT
Sbjct: 269 ASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAGLTALT 319
>gi|340728038|ref|XP_003402339.1| PREDICTED: f-box/LRR-repeat protein 14-like [Bombus terrestris]
Length = 485
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 141/279 (50%), Gaps = 50/279 (17%)
Query: 68 DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++T+ GL+ + + L+ LD C Q+SD G+ HL G++ ++
Sbjct: 246 NITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNR-----------------ES 288
Query: 127 FAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
G + L L L+ C R+ L ++ GL L+S+N+ +C CITDS +K L+ +++L+
Sbjct: 289 AGGNLALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRE 348
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNRCQL 240
L + SC ++D G+AYL +G +++ L++ C A + L +L L+L+ CQ+
Sbjct: 349 LNLRSCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQI 408
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-G 298
SD+G K +K L +LE+LN+ C + D+GL +
Sbjct: 409 SDEGICKIAKT-----------------------LHDLETLNIGQCSRLTDKGLYTIAES 445
Query: 299 LCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGI 336
+ +LKC++L T++ ++GL + L L ++NL +
Sbjct: 446 MKHLKCIDLYGCTRISTNGLERIMKLPQLSTLNLGLWHV 484
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 158/307 (51%), Gaps = 34/307 (11%)
Query: 200 LKGLQKLTLLNLEGCP-------VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSK- 250
LKG+ L LNL GC + A C + +L LNL+ C Q+SD + +
Sbjct: 177 LKGVPNLEALNLSGCYNITDVGLINAFCQE----YATLIELNLSLCKQVSDISLGRIVQY 232
Query: 251 IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSCG-IGDEGLVNLTGL-------- 299
+ +L+ L LG IT+ L+ + L L+ L+L SC + D G+ +L G+
Sbjct: 233 LKNLEHLELGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNRESAGGN 292
Query: 300 CNLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD 356
L+ L L D Q + LRH+S GLT L+SINLSF I+D L+ LA +SSL+ LNL
Sbjct: 293 LALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRELNLR 352
Query: 357 A-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAG 412
+ I+D G+A L + ++ LD+ F +I D ++ + NL+ L + ++D G
Sbjct: 353 SCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEG 412
Query: 413 V-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLK 469
+ K K L L LN+ Q LTDK L I+ + L +++ +RI++ GL + L
Sbjct: 413 ICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLP 472
Query: 470 NLRSLTL 476
L +L L
Sbjct: 473 QLSTLNL 479
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 158/325 (48%), Gaps = 68/325 (20%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGL------EH----------------------LRGLSNL 108
LK NL++L+ + C I+D GL E+ ++ L NL
Sbjct: 177 LKGVPNLEALNLSGCYNITDVGLINAFCQEYATLIELNLSLCKQVSDISLGRIVQYLKNL 236
Query: 109 TSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGL--------MKLE 158
L IT G+ A L L +LDL C ++ G+ +L G+ + LE
Sbjct: 237 EHLELGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNRESAGGNLALE 296
Query: 159 SLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L+++ C ++D ++ +S GLT LKS+ +S C +TDSG+ +L + L LNL C
Sbjct: 297 HLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRELNLRSC-- 354
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KG 274
D++S +G + L++ G S+I SL V F ++I D+ LVH+ +G
Sbjct: 355 -----DNISDIGMAY--------LAEGG----SRISSLDV---SFCDKIGDQALVHISQG 394
Query: 275 LTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL 331
L NL+ L+L +C I DEG+ + L +L+ L + +++ GL ++ + +L+ I+L
Sbjct: 395 LFNLKLLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDL 454
Query: 332 -SFTGISDGSLRKLAGLSSLKSLNL 355
T IS L ++ L L +LNL
Sbjct: 455 YGCTRISTNGLERIMKLPQLSTLNL 479
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 149/305 (48%), Gaps = 54/305 (17%)
Query: 151 LKGLMKLESLNIKWCNCITD-------------------------SDM---KPLSGLTNL 182
LKG+ LE+LN+ C ITD SD+ + + L NL
Sbjct: 177 LKGVPNLEALNLSGCYNITDVGLINAFCQEYATLIELNLSLCKQVSDISLGRIVQYLKNL 236
Query: 183 KSLQI-SCSKVTDSG---IAYLKGLQKLTLLNLEGCPVTA-------ACLDSLSALG--S 229
+ L++ C +T+ G IA+ L+KL L+L C + A ++ SA G +
Sbjct: 237 EHLELGGCCNITNGGLLCIAW--NLKKLKRLDLRSCWQVSDLGIAHLAGVNRESAGGNLA 294
Query: 230 LFYLNLNRCQLSDDGCEKFSKIG--SLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC 286
L +L+L CQ D + IG +LK +NL F ITD L HL +++L LNL SC
Sbjct: 295 LEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRELNLRSC 354
Query: 287 -GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS-GLTNLESINLSFTGISDGSLR 342
I D G+ L G + L++S ++G L H+S GL NL+ ++LS ISD +
Sbjct: 355 DNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEGIC 414
Query: 343 KLAG-LSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNL 398
K+A L L++LN+ ++TD GL + S+ L +DL+G RI+ +G + L
Sbjct: 415 KIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQL 474
Query: 399 RSLEI 403
+L +
Sbjct: 475 STLNL 479
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 120/247 (48%), Gaps = 39/247 (15%)
Query: 28 FRDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD---VTDSGLIHLK-DCSN 82
R C + DL + GVN + S G +L LS D ++D L H+ +
Sbjct: 267 LRSCWQVSDLGIAHLAGVNRE------SAGGNLALEHLSLQDCQRLSDEALRHVSIGLTT 320
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L+S++ +FC+ I+D GL+HL +S+L L+ R + I+ GM A
Sbjct: 321 LKSINLSFCVCITDSGLKHLAKMSSLRELNLRSCDNISDIGMAYLA-------------- 366
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYL- 200
+G ++ SL++ +C+ I D + +S GL NLK L +S +++D GI +
Sbjct: 367 ---------EGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEGICKIA 417
Query: 201 KGLQKLTLLNLEGCP-VTAACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVL 257
K L L LN+ C +T L +++ ++ L ++L C ++S +G E+ K+ L L
Sbjct: 418 KTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQLSTL 477
Query: 258 NLGFNEI 264
NLG +
Sbjct: 478 NLGLWHV 484
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 126/249 (50%), Gaps = 40/249 (16%)
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLC---------NLK-CLELSDTQVGSSGLRHL 320
LKG+ NLE+LNL C I D GL+N C NL C ++SD +G R +
Sbjct: 177 LKGVPNLEALNLSGCYNITDVGLIN--AFCQEYATLIELNLSLCKQVSDISLG----RIV 230
Query: 321 SGLTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT----- 372
L NLE + L I++G L +A L LK L+L + Q++D G+A L +
Sbjct: 231 QYLKNLEHLELGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNRESAG 290
Query: 373 ---GLTHLDLFG-ARITDSGAAYLR-NFKNLRSLE----ICGGGLTDAGVKHIKDLSSLT 423
L HL L R++D ++ L+S+ +C +TD+G+KH+ +SSL
Sbjct: 291 GNLALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVC---ITDSGLKHLAKMSSLR 347
Query: 424 LLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCK 480
LNL N++D + L G + + SL+VS +I L H+ + L NL+ L+L +C+
Sbjct: 348 ELNLRSCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQ 407
Query: 481 VTANDIKRL 489
++ I ++
Sbjct: 408 ISDEGICKI 416
>gi|219821357|gb|ACL37816.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESIIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKV 368
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L + +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESIIATNNQISD--ITPLGILTNLD 196
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|219821300|gb|ACL37778.1| internalin A [Listeria monocytogenes]
gi|219821378|gb|ACL37830.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 368
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 32 SIDGLKYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|219821333|gb|ACL37800.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DINPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVKYKV 368
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 87
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--INPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|219821291|gb|ACL37772.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNKVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKA 368
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNKVT 140
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|219821282|gb|ACL37766.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
+L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SSLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKV 368
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 130/273 (47%), Gaps = 37/273 (13%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I++
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 251
Query: 460 ----AG-------------LRHLKPLKNLRSLT 475
AG L + P+ NL++LT
Sbjct: 252 ISSLAGLTALTNLELNENQLEDISPISNLKNLT 284
>gi|168030611|ref|XP_001767816.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680898|gb|EDQ67330.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 628
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 136/491 (27%), Positives = 219/491 (44%), Gaps = 74/491 (15%)
Query: 20 LTEVSLEAFRDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLK 78
+T+ L + C L+ L L G+ D + +A L +DLS ++V+D GL L
Sbjct: 147 VTDSGLSSLSRCKGLRILGLKYCSGLGDFGIQNVAIGCQRLYIIDLSFTEVSDKGLASLA 206
Query: 79 DCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGL-INLVKL 136
+L+ L CI ++D GL LR G +L L+ + +++QG+ G + L +L
Sbjct: 207 LLKHLECLSLISCINVTDKGLSCLRNGCKSLQKLNVAKCLNVSSQGIIELTGSSVQLQEL 266
Query: 137 DLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS-CSKVT 193
+L C I L + + L L+ + + C I DS++ + SG LK L +S C VT
Sbjct: 267 NLSYCKLISNVLFASFQKLKTLQVVKLDGCV-IGDSNLSLIGSGCIELKELSLSKCQGVT 325
Query: 194 DSGIAYL----KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
D+G+ + GLQKL L TA + S G L L + C L
Sbjct: 326 DAGVVGVVTSCTGLQKLDLTCCRDITDTALKAVATSCTG-LLSLRMENCLL--------- 375
Query: 250 KIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNL---TGLCNLK-- 303
+T E L+ + K LE L+L C + D GL ++ GL LK
Sbjct: 376 --------------VTAEGLIMIGKSCVYLEELDLTDCNLNDNGLKSIGRCRGLRLLKVG 421
Query: 304 -CLELSDTQVGSSGLRHLSGLTNLESIN-LSFTGISDGSLRKLA-GLSSLKSLNLD-ARQ 359
C++++ + S G + TNL ++ GISD + +A G LK +NL
Sbjct: 422 YCMDITYAGLASIG----ATCTNLRELDCYRSVGISDEGVAAIASGCKRLKVVNLSYCSS 477
Query: 360 ITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHIK 417
ITD L +L L+ L L+L ++IT +G +Y+ + K+LR L+ VK K
Sbjct: 478 ITDASLHSLALLSDLVQLELRACSQITSAGISYIGASCKHLRELD----------VKRCK 527
Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 477
+ +L LS+ C L +N+S + +T AG+ + + ++ + L
Sbjct: 528 FVGDHGVLALSRGCR-------------NLRQVNLSYTAVTDAGMMAIANMSCIQDMKLV 574
Query: 478 SCKVTANDIKR 488
VT++ R
Sbjct: 575 HVNVTSSCFAR 585
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 118/428 (27%), Positives = 194/428 (45%), Gaps = 86/428 (20%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L+ ++ LD + C++++D + L ++ TS AI +G AG +LV+
Sbjct: 53 LRRYPQIECLDLSSCVEVTD---QCLAAVAKFTSSRLISIKAIRTKGF-TIAGFRSLVEC 108
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDS 195
L+ +++ +C + D+++ LS L +L+ L++ SC VTDS
Sbjct: 109 RF------------------LQDVDVTFCTQVGDAEVIALSELRHLQKLKLDSCRDVTDS 150
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G++ L + L +L L+ C S LG N+ GC++ L
Sbjct: 151 GLSSLSRCKGLRILGLKYC----------SGLGDFGIQNVA------IGCQR------LY 188
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN-------LKCLEL 307
+++L F E++D+ L L L +LE L+L SC + D+GL L C KCL +
Sbjct: 189 IIDLSFTEVSDKGLASLALLKHLECLSLISCINVTDKGLSCLRNGCKSLQKLNVAKCLNV 248
Query: 308 SDTQVGSSGLRHLSGLT-NLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
S S G+ L+G + L+ +NLS+ IS+ L +L+ + LD I D+ L
Sbjct: 249 S-----SQGIIELTGSSVQLQELNLSYCKLISNVLFASFQKLKTLQVVKLDGCVIGDSNL 303
Query: 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH-IKDLSSLTL 424
SL G SG L+ SL C G+TDAGV + + L
Sbjct: 304 ----SLIG-------------SGCIELKEL----SLSKC-QGVTDAGVVGVVTSCTGLQK 341
Query: 425 LNLSQNCNLTDKTLELIS-GLTGLVSLNVSNS-RITSAGLRHL-KPLKNLRSLTLESCKV 481
L+L+ ++TD L+ ++ TGL+SL + N +T+ GL + K L L L C +
Sbjct: 342 LDLTCCRDITDTALKAVATSCTGLLSLRMENCLLVTAEGLIMIGKSCVYLEELDLTDCNL 401
Query: 482 TANDIKRL 489
N +K +
Sbjct: 402 NDNGLKSI 409
>gi|298359932|gb|ADI77545.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|350417674|ref|XP_003491538.1| PREDICTED: F-box/LRR-repeat protein 14-like [Bombus impatiens]
Length = 485
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 141/279 (50%), Gaps = 50/279 (17%)
Query: 68 DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++T+ GL+ + + L+ LD C Q+SD G+ HL G++ ++
Sbjct: 246 NITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNR-----------------ES 288
Query: 127 FAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
G + L L L+ C R+ L ++ GL L+S+N+ +C CITDS +K L+ +++L+
Sbjct: 289 AGGNLALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRE 348
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNRCQL 240
L + SC ++D G+AYL +G +++ L++ C A + L +L L+L+ CQ+
Sbjct: 349 LNLRSCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQI 408
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-G 298
SD+G K +K L +LE+LN+ C + D+GL +
Sbjct: 409 SDEGICKIAKT-----------------------LHDLETLNIGQCSRLTDKGLYTIAES 445
Query: 299 LCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGI 336
+ +LKC++L T++ ++GL + L L ++NL +
Sbjct: 446 MKHLKCIDLYGCTRISTNGLERIMKLPQLSTLNLGLWHV 484
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 158/307 (51%), Gaps = 34/307 (11%)
Query: 200 LKGLQKLTLLNLEGCP-------VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSK- 250
LKG+ L LNL GC + A C + +L LNL+ C Q+SD + +
Sbjct: 177 LKGVPNLEALNLSGCYNITDVGLINAFCQE----YATLIELNLSLCKQVSDISLGRIVQY 232
Query: 251 IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSCG-IGDEGLVNLTGL-------- 299
+ +L+ L LG IT+ L+ + L L+ L+L SC + D G+ +L G+
Sbjct: 233 LKNLEHLELGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNRESAGGN 292
Query: 300 CNLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD 356
L+ L L D Q + LRH+S GLT L+SINLSF I+D L+ LA +SSL+ LNL
Sbjct: 293 LALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRELNLR 352
Query: 357 A-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAG 412
+ I+D G+A L + ++ LD+ F +I D ++ + NL+ L + ++D G
Sbjct: 353 SCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEG 412
Query: 413 V-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLK 469
+ K K L L LN+ Q LTDK L I+ + L +++ +RI++ GL + L
Sbjct: 413 ICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLP 472
Query: 470 NLRSLTL 476
L +L L
Sbjct: 473 QLSTLNL 479
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 158/325 (48%), Gaps = 68/325 (20%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGL------EH----------------------LRGLSNL 108
LK NL++L+ + C I+D GL E+ ++ L NL
Sbjct: 177 LKGVPNLEALNLSGCYNITDVGLINAFCQEYATLIELNLSLCKQVSDISLGRIVQYLKNL 236
Query: 109 TSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGL--------MKLE 158
L IT G+ A L L +LDL C ++ G+ +L G+ + LE
Sbjct: 237 EHLELGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNRESAGGNLALE 296
Query: 159 SLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L+++ C ++D ++ +S GLT LKS+ +S C +TDSG+ +L + L LNL C
Sbjct: 297 HLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRELNLRSC-- 354
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KG 274
D++S +G + L++ G S+I SL V F ++I D+ LVH+ +G
Sbjct: 355 -----DNISDIGMAY--------LAEGG----SRISSLDV---SFCDKIGDQALVHISQG 394
Query: 275 LTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL 331
L NL+ L+L +C I DEG+ + L +L+ L + +++ GL ++ + +L+ I+L
Sbjct: 395 LFNLKLLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDL 454
Query: 332 -SFTGISDGSLRKLAGLSSLKSLNL 355
T IS L ++ L L +LNL
Sbjct: 455 YGCTRISTNGLERIMKLPQLSTLNL 479
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 149/305 (48%), Gaps = 54/305 (17%)
Query: 151 LKGLMKLESLNIKWCNCITD-------------------------SDM---KPLSGLTNL 182
LKG+ LE+LN+ C ITD SD+ + + L NL
Sbjct: 177 LKGVPNLEALNLSGCYNITDVGLINAFCQEYATLIELNLSLCKQVSDISLGRIVQYLKNL 236
Query: 183 KSLQI-SCSKVTDSG---IAYLKGLQKLTLLNLEGCPVTA-------ACLDSLSALG--S 229
+ L++ C +T+ G IA+ L+KL L+L C + A ++ SA G +
Sbjct: 237 EHLELGGCCNITNGGLLCIAW--NLKKLKRLDLRSCWQVSDLGIAHLAGVNRESAGGNLA 294
Query: 230 LFYLNLNRCQLSDDGCEKFSKIG--SLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC 286
L +L+L CQ D + IG +LK +NL F ITD L HL +++L LNL SC
Sbjct: 295 LEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRELNLRSC 354
Query: 287 -GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS-GLTNLESINLSFTGISDGSLR 342
I D G+ L G + L++S ++G L H+S GL NL+ ++LS ISD +
Sbjct: 355 DNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEGIC 414
Query: 343 KLAG-LSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNL 398
K+A L L++LN+ ++TD GL + S+ L +DL+G RI+ +G + L
Sbjct: 415 KIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQL 474
Query: 399 RSLEI 403
+L +
Sbjct: 475 STLNL 479
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 120/247 (48%), Gaps = 39/247 (15%)
Query: 28 FRDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD---VTDSGLIHLK-DCSN 82
R C + DL + GVN + S G +L LS D ++D L H+ +
Sbjct: 267 LRSCWQVSDLGIAHLAGVNRE------SAGGNLALEHLSLQDCQRLSDEALRHVSIGLTT 320
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L+S++ +FC+ I+D GL+HL +S+L L+ R + I+ GM A
Sbjct: 321 LKSINLSFCVCITDSGLKHLAKMSSLRELNLRSCDNISDIGMAYLA-------------- 366
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYL- 200
+G ++ SL++ +C+ I D + +S GL NLK L +S +++D GI +
Sbjct: 367 ---------EGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEGICKIA 417
Query: 201 KGLQKLTLLNLEGCP-VTAACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVL 257
K L L LN+ C +T L +++ ++ L ++L C ++S +G E+ K+ L L
Sbjct: 418 KTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQLSTL 477
Query: 258 NLGFNEI 264
NLG +
Sbjct: 478 NLGLWHV 484
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 126/249 (50%), Gaps = 40/249 (16%)
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLC---------NLK-CLELSDTQVGSSGLRHL 320
LKG+ NLE+LNL C I D GL+N C NL C ++SD +G R +
Sbjct: 177 LKGVPNLEALNLSGCYNITDVGLIN--AFCQEYATLIELNLSLCKQVSDISLG----RIV 230
Query: 321 SGLTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT----- 372
L NLE + L I++G L +A L LK L+L + Q++D G+A L +
Sbjct: 231 QYLKNLEHLELGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNRESAG 290
Query: 373 ---GLTHLDLFG-ARITDSGAAYLR-NFKNLRSLE----ICGGGLTDAGVKHIKDLSSLT 423
L HL L R++D ++ L+S+ +C +TD+G+KH+ +SSL
Sbjct: 291 GNLALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVC---ITDSGLKHLAKMSSLR 347
Query: 424 LLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCK 480
LNL N++D + L G + + SL+VS +I L H+ + L NL+ L+L +C+
Sbjct: 348 ELNLRSCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQ 407
Query: 481 VTANDIKRL 489
++ I ++
Sbjct: 408 ISDEGICKI 416
>gi|300704108|ref|YP_003745710.1| leucine-rich-repeat type III effector protein (gala4) [Ralstonia
solanacearum CFBP2957]
gi|299071771|emb|CBJ43095.1| leucine-rich-repeat type III effector protein (GALA4) [Ralstonia
solanacearum CFBP2957]
Length = 461
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 139/296 (46%), Gaps = 8/296 (2%)
Query: 168 ITDSDMKPLSGLTNLKSLQISC--SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
TD+D++ L +L+ L +S +T GIA+L L L L++ GC + A L+
Sbjct: 133 FTDADLQRLP--PSLRELDLSLCEGPITAVGIAHLLAL-PLDRLDVSGCELNADSARLLA 189
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
+L LNL R + D G F++ L LN+ N I + L T + +L++ +
Sbjct: 190 GHPTLTTLNLRRNAIDDAGVAAFARNKKLTTLNVSSNGIGPAGVRALAANTTITTLDISN 249
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
IGDEG + L L L+ SD +G G + L+ T L S++LS+ I + L
Sbjct: 250 NEIGDEGALALASNTTLTRLDASDCGIGPEGTQALATSTTLTSLDLSYNAIEAEGVEALG 309
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
++L++L+ ++ L + T LT L+L I ++GA L L +
Sbjct: 310 RNTTLRTLHACGNELGHREAELLAANTTLTVLNLSSNAIGNAGARAFGANTTLVELNLSN 369
Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
G+ V D LT L+LS N + D ++++ L +LNV ++RI G
Sbjct: 370 NGIER--VPEWADNGKLTTLDLSNN-QIGDTAAQVLAASRTLTTLNVGSNRIGDTG 422
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 90/337 (26%), Positives = 150/337 (44%), Gaps = 14/337 (4%)
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA----ITAQGMK 125
TD+ L L +L+ LD + C +G + + G+++L +L R + + A +
Sbjct: 134 TDADLQRLP--PSLRELDLSLC----EGPITAV-GIAHLLALPLDRLDVSGCELNADSAR 186
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
AG L L+L R G+ KL +LN+ N I + ++ L+ T + +L
Sbjct: 187 LLAGHPTLTTLNLRRNAIDDAGVAAFARNKKLTTLNVS-SNGIGPAGVRALAANTTITTL 245
Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
IS +++ D G L LT L+ C + +L+ +L L+L+ + +G
Sbjct: 246 DISNNEIGDEGALALASNTTLTRLDASDCGIGPEGTQALATSTTLTSLDLSYNAIEAEGV 305
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
E + +L+ L+ NE+ L T L LNL S IG+ G N +
Sbjct: 306 EALGRNTTLRTLHACGNELGHREAELLAANTTLTVLNLSSNAIGNAGARAFG--ANTTLV 363
Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
EL+ + G + + L +++LS I D + + LA +L +LN+ + +I DTG
Sbjct: 364 ELNLSNNGIERVPEWADNGKLTTLDLSNNQIGDTAAQVLAASRTLTTLNVGSNRIGDTGA 423
Query: 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
AL T LT L++ RI +G L L LE
Sbjct: 424 CALAGNTTLTTLNVSLNRIGKAGMLALAANTTLEKLE 460
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 118/268 (44%), Gaps = 21/268 (7%)
Query: 203 LQKLTLLNLEGC-----PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
+Q+LT+ N +G P L L+ +G +L R SL+ L
Sbjct: 101 IQQLTITNRKGSGGIPSPDDYPALRKLTLVGPFTDADLQRLP------------PSLREL 148
Query: 258 NLGFNE--ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
+L E IT + HL L L+ L++ C + + L G L L L + +
Sbjct: 149 DLSLCEGPITAVGIAHLLALP-LDRLDVSGCELNADSARLLAGHPTLTTLNLRRNAIDDA 207
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
G+ + L ++N+S GI +R LA +++ +L++ +I D G AL S T LT
Sbjct: 208 GVAAFARNKKLTTLNVSSNGIGPAGVRALAANTTITTLDISNNEIGDEGALALASNTTLT 267
Query: 376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
LD I G L L SL++ + GV+ + ++L L+ N L
Sbjct: 268 RLDASDCGIGPEGTQALATSTTLTSLDLSYNAIEAEGVEALGRNTTLRTLHACGN-ELGH 326
Query: 436 KTLELISGLTGLVSLNVSNSRITSAGLR 463
+ EL++ T L LN+S++ I +AG R
Sbjct: 327 REAELLAANTTLTVLNLSSNAIGNAGAR 354
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 103/252 (40%), Gaps = 33/252 (13%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+++ ++D+S +++ D G + L + L LD + C I G + L + LTSL
Sbjct: 240 TTITTLDISNNEIGDEGALALASNTTLTRLDASDC-GIGPEGTQALATSTTLTSLDLSY- 297
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
NAI A+G++A N L C N + + + L
Sbjct: 298 NAIEAEGVEALG--RNTTLRTLHAC-----------------------GNELGHREAELL 332
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE--GCPVTAACLDSLSALGSLFYLN 234
+ T L L +S + + ++G L LNL G D+ G L L+
Sbjct: 333 AANTTLTVLNLSSNAIGNAGARAFGANTTLVELNLSNNGIERVPEWADN----GKLTTLD 388
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
L+ Q+ D + + +L LN+G N I D L G T L +LN+ IG G++
Sbjct: 389 LSNNQIGDTAAQVLAASRTLTTLNVGSNRIGDTGACALAGNTTLTTLNVSLNRIGKAGML 448
Query: 295 NLTGLCNLKCLE 306
L L+ LE
Sbjct: 449 ALAANTTLEKLE 460
>gi|219821330|gb|ACL37798.1| internalin A [Listeria monocytogenes]
gi|219821348|gb|ACL37810.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAAHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKV 368
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|194755888|ref|XP_001960211.1| GF13252 [Drosophila ananassae]
gi|190621509|gb|EDV37033.1| GF13252 [Drosophila ananassae]
Length = 492
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 105/331 (31%), Positives = 162/331 (48%), Gaps = 68/331 (20%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 208 SPSLFNCLV-KRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 249
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAI 119
+V D L H D NL++LD + C QI+D L +HLR NL +L I
Sbjct: 250 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLR---NLETLELGGCCNI 306
Query: 120 TAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCIT 169
T G+ A GL L L+L C I G+ +L G ++LE L ++ C ++
Sbjct: 307 TNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLS 366
Query: 170 DSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
D + ++ GLT+LKS+ +S C VTDSG+ +L + KL LNL C D++S +
Sbjct: 367 DEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDI 419
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDS 285
G + L++ G S I SL V F ++I+D+ L H+ +GL L SL+L+
Sbjct: 420 GMAY--------LTEGG----SGINSLDV---SFCDKISDQALTHIAQGLYRLRSLSLNQ 464
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
C I D G++ + + EL + +G +
Sbjct: 465 CQITDHGMLKIAKALH----ELENLNIGHAA 491
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 119/244 (48%), Gaps = 34/244 (13%)
Query: 274 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 324
G+ L SLNL C +G V+L L L C +++DT +G +HL L
Sbjct: 238 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLE 296
Query: 325 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-----GLT 375
LE N++ TG+ L GL LK LNL + I+D G+ L + G
Sbjct: 297 TLELGGCCNITNTGL----LLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNL 352
Query: 376 HLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 428
L+ G R++D ++ + +L+S L C +TD+G+KH+ + L LNL
Sbjct: 353 QLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 411
Query: 429 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAND 485
N++D + L G +G+ SL+VS +I+ L H+ + L LRSL+L C++T +
Sbjct: 412 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHG 471
Query: 486 IKRL 489
+ ++
Sbjct: 472 MLKI 475
>gi|321455314|gb|EFX66450.1| hypothetical protein DAPPUDRAFT_302690 [Daphnia pulex]
Length = 397
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 100/316 (31%), Positives = 157/316 (49%), Gaps = 43/316 (13%)
Query: 61 SVDLSGS-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRN 116
S+DLSG +VTD G+ H D L+ L+ + C QI+D L L + L L
Sbjct: 98 SLDLSGCFNVTDIGIAHALTADVPTLKRLNLSLCKQITDSSLSKLAQYCRQLQELDLGGC 157
Query: 117 NAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGL-------MKLESLNIKWCNC 167
+T G+ A GL +L L+L C + G+ +L GL + LE L ++ C
Sbjct: 158 CNVTNAGLLLIAWGLKSLKSLNLRSCWHVSDLGIASLAGLGSDAEGNLALEHLGLQDCQK 217
Query: 168 ITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+TD + +S GL LKS+ +S C ++DSG+ YL + L LNL C D++S
Sbjct: 218 LTDDALMHVSTGLKQLKSINLSFCLSISDSGLKYLAKMPSLAELNLRSC-------DNIS 270
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNL 283
+G + YL E S+I SL V F + I D+ +VH+ +GL +L+ L+L
Sbjct: 271 DVG-MAYL-----------AEGGSRITSLDV---SFCDRIDDQAVVHVAQGLVHLKQLSL 315
Query: 284 DSCGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDG 339
+C + DEGL+ + L +L+ L + +++ ++ ++ L L I+L T I+
Sbjct: 316 SACHVSDEGLIRVALSLLDLQTLNIGQCSRITDRSIQAVADHLRKLRCIDLYGCTKITTS 375
Query: 340 SLRKLAGLSSLKSLNL 355
L K+ L L LNL
Sbjct: 376 GLEKIMKLPELSVLNL 391
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 125/238 (52%), Gaps = 21/238 (8%)
Query: 273 KGLTNLESLNLDSC-GIGDEGLVN-LTG-LCNLKCLELS-DTQVGSSGLRHLSGL-TNLE 327
+GL N+ESL+L C + D G+ + LT + LK L LS Q+ S L L+ L+
Sbjct: 91 QGLPNIESLDLSGCFNVTDIGIAHALTADVPTLKRLNLSLCKQITDSSLSKLAQYCRQLQ 150
Query: 328 SINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSL-------TGLTHL 377
++L +++ L +A GL SLKSLNL + ++D G+A+L L L HL
Sbjct: 151 ELDLGGCCNVTNAGLLLIAWGLKSLKSLNLRSCWHVSDLGIASLAGLGSDAEGNLALEHL 210
Query: 378 DLFG-ARITDSGAAYLRN-FKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
L ++TD ++ K L+S+ + ++D+G+K++ + SL LNL N++
Sbjct: 211 GLQDCQKLTDDALMHVSTGLKQLKSINLSFCLSISDSGLKYLAKMPSLAELNLRSCDNIS 270
Query: 435 DKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 489
D + L G + + SL+VS RI + H+ + L +L+ L+L +C V+ + R+
Sbjct: 271 DVGMAYLAEGGSRITSLDVSFCDRIDDQAVVHVAQGLVHLKQLSLSACHVSDEGLIRV 328
>gi|223006802|gb|ACM69358.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|290991352|ref|XP_002678299.1| predicted protein [Naegleria gruberi]
gi|284091911|gb|EFC45555.1| predicted protein [Naegleria gruberi]
Length = 383
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 167/353 (47%), Gaps = 22/353 (6%)
Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
TSLS+R +A ++ LI V ++E LV+ L L+SL++ I
Sbjct: 29 TSLSYR--DACLIAKFESLEELIGEVGDEME-------ALVDY--LPNLKSLDVGLVQEI 77
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
+++ +S L NL + I S + + + + +LT LN+ G P+ + L + L
Sbjct: 78 CYENVEYISELQNLTTFSIRYSNIGRKHLQIIGEMSQLTDLNISGNPINS--LLPIRPLT 135
Query: 229 SLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDE-CLVHLKGLTNLESLNLDSC 286
+ L+ C L DDG L+ LNL N IT E C+ + NL L+L+
Sbjct: 136 RITSLSAADCSFLGDDGIYPIVNFKGLQKLNLSSNGITWEGCMFISEKFPNLSHLSLNET 195
Query: 287 GIGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKL 344
I D + L+ + L L++ ++ ++ G++ +S LTNL +N+S ++D L
Sbjct: 196 RICDGAIKRLSKMKQLTYLDVGNNAKITMEGIKLISNNLTNLTHLNISSNNVTDEGLMMA 255
Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTG--LTHLDLFGARITDSGAAYL-RNFKNLRSL 401
L L+ L + QITD+G+ + G L L L IT YL NL+ L
Sbjct: 256 CDLPKLQELFVGHNQITDSGINEFSEKIGNKLKILSLSRNNITSLCTQYLCTKLTNLKKL 315
Query: 402 EICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
+ G +TD VK I + + L L++S N N+TDK+LE + L ++V+
Sbjct: 316 YLAGVSITDEDVKLICQCMKLLIYLDVSWN-NVTDKSLEYVIASESLREVDVN 367
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 155/338 (45%), Gaps = 48/338 (14%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
NL+SLD +I +E++ L NLT+ S R +N I + ++ + L L+
Sbjct: 65 NLKSLDVGLVQEICYENVEYISELQNLTTFSIRYSN-IGRKHLQIIGEMSQLTDLN---- 119
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL 200
I G +N + P+ LT + SL + CS + D GI +
Sbjct: 120 --ISGNPIN---------------------SLLPIRPLTRITSLSAADCSFLGDDGIYPI 156
Query: 201 ---KGLQKLTL----LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
KGLQKL L + EGC + +LS +L+LN ++ D ++ SK+
Sbjct: 157 VNFKGLQKLNLSSNGITWEGCMFISEKFPNLS------HLSLNETRICDGAIKRLSKMKQ 210
Query: 254 LKVLNLGFN-EITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
L L++G N +IT E + + LTNL LN+ S + DEGL+ L L+ L + Q
Sbjct: 211 LTYLDVGNNAKITMEGIKLISNNLTNLTHLNISSNNVTDEGLMMACDLPKLQELFVGHNQ 270
Query: 312 VGSSGLRHLSGL--TNLESINLSFTGISDGSLRKL-AGLSSLKSLNLDARQITDTGLAAL 368
+ SG+ S L+ ++LS I+ + L L++LK L L ITD + +
Sbjct: 271 ITDSGINEFSEKIGNKLKILSLSRNNITSLCTQYLCTKLTNLKKLYLAGVSITDEDVKLI 330
Query: 369 TS-LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
+ L +LD+ +TD Y+ ++LR +++ G
Sbjct: 331 CQCMKLLIYLDVSWNNVTDKSLEYVIASESLREVDVNG 368
>gi|325111037|ref|YP_004272105.1| hypothetical protein Plabr_4512 [Planctomyces brasiliensis DSM
5305]
gi|324971305|gb|ADY62083.1| hypothetical protein Plabr_4512 [Planctomyces brasiliensis DSM
5305]
Length = 407
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 158/318 (49%), Gaps = 15/318 (4%)
Query: 184 SLQISCSKV--TDSGIAYLKGLQKLTLL-NLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+L++ C + D + LK +K T++ +L ++ LDSL L L L ++
Sbjct: 75 TLELDCRRAHFPDGSLELLKVFEKQTVIVDLSLSNISDDSLDSLKDFNRLEVLILAHTRI 134
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL-TGL 299
+ ++ S I SL L+L E DE + L L L+ L + + + ++G L T +
Sbjct: 135 TGSRLDQLSSITSLHTLDLTAIEFDDESVPSLASLRQLQRLKVPTSKLSEDGFALLCTRM 194
Query: 300 CNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDA 357
L+ L+LS + V +S L HL+ + L + +SF I D ++ LAGL +LK L+L+
Sbjct: 195 PFLRSLDLSGRRGVANSWLTHLAKMPRLNVLGVSFAKNIDDDAIPLLAGLPALKWLSLEG 254
Query: 358 RQITDTGLAALTSLTGLTHLDL----FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
IT AAL +LT L L L F A T + LR+ K L +L C +
Sbjct: 255 TSITGMFPAALGNLTNLDTLSLAHCTFNAPQTLESLSKLRSLKQL-NLNDCKNI---TSL 310
Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 473
K ++ +S L + L +N NLTD L+ + L ++++ RI + + LK L++
Sbjct: 311 KFLRGMSHLEAIGL-KNTNLTDAILKELQYCLQLKYVDLTRCRIGKETISTISQLKLLQT 369
Query: 474 LTLESCKVTANDIKRLQS 491
++L ++ +++I ++S
Sbjct: 370 ISLSGTQIDSDNIIPIRS 387
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 88/324 (27%), Positives = 146/324 (45%), Gaps = 41/324 (12%)
Query: 26 EAFRDCALQDL-CL-GQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNL 83
E++RD + +L C +P + + + V Q + VDLS S+++D L LKD + L
Sbjct: 68 ESYRDASTLELDCRRAHFPDGSLELLKVFEKQT---VIVDLSLSNISDDSLDSLKDFNRL 124
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA--QGMKAFAGLINLVKLDLER- 140
+ L +I+ L+ L +++L +L AI + + + A L L +L +
Sbjct: 125 EVLILAHT-RITGSRLDQLSSITSLHTLDL---TAIEFDDESVPSLASLRQLQRLKVPTS 180
Query: 141 ----------CTRI---------------HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
CTR+ + L +L + +L L + + I D +
Sbjct: 181 KLSEDGFALLCTRMPFLRSLDLSGRRGVANSWLTHLAKMPRLNVLGVSFAKNIDDDAIPL 240
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-CLDSLSALGSLFYLN 234
L+GL LK L + + +T A L L L L+L C A L+SLS L SL LN
Sbjct: 241 LAGLPALKWLSLEGTSITGMFPAALGNLTNLDTLSLAHCTFNAPQTLESLSKLRSLKQLN 300
Query: 235 LNRCQLSDDGCEKFSK-IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
LN C+ + KF + + L+ + L +TD L L+ L+ ++L C IG E +
Sbjct: 301 LNDCK--NITSLKFLRGMSHLEAIGLKNTNLTDAILKELQYCLQLKYVDLTRCRIGKETI 358
Query: 294 VNLTGLCNLKCLELSDTQVGSSGL 317
++ L L+ + LS TQ+ S +
Sbjct: 359 STISQLKLLQTISLSGTQIDSDNI 382
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 97/218 (44%), Gaps = 29/218 (13%)
Query: 59 LLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L S+DLSG V +S L HL L L +F I D + L GL L LS
Sbjct: 197 LRSLDLSGRRGVANSWLTHLAKMPRLNVLGVSFAKNIDDDAIPLLAGLPALKWLSLE-GT 255
Query: 118 AITAQGMKAFAGLINLVKLDLERCT-RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+IT A L NL L L CT L +L L L+ LN+ C IT +K L
Sbjct: 256 SITGMFPAALGNLTNLDTLSLAHCTFNAPQTLESLSKLRSLKQLNLNDCKNITS--LKFL 313
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
G+++L+++ + + +TD A LK LQ CL L Y++L
Sbjct: 314 RGMSHLEAIGLKNTNLTD---AILKELQ--------------YCL-------QLKYVDLT 349
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
RC++ + S++ L+ ++L +I + ++ ++
Sbjct: 350 RCRIGKETISTISQLKLLQTISLSGTQIDSDNIIPIRS 387
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 79/336 (23%), Positives = 140/336 (41%), Gaps = 30/336 (8%)
Query: 112 SFRRNNAITAQGMKAFAGLI---NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
S R + IT + + A A + ++LD R G L LK K + + I
Sbjct: 51 SIRLSGLITQERIDAIAESYRDASTLELDCRRAHFPDGSLELLKVFEKQTVIVDLSLSNI 110
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
+D + L L+ L ++ +++T S + L + L L+L + SL++L
Sbjct: 111 SDDSLDSLKDFNRLEVLILAHTRITGSRLDQLSSITSLHTLDLTAIEFDDESVPSLASLR 170
Query: 229 SLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLD-S 285
L L + +LS+DG +++ L+ L+L G + + L HL + L L + +
Sbjct: 171 QLQRLKVPTSKLSEDGFALLCTRMPFLRSLDLSGRRGVANSWLTHLAKMPRLNVLGVSFA 230
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG------ 339
I D+ + L GL LK L L T + L LTNL++++L+ +
Sbjct: 231 KNIDDDAIPLLAGLPALKWLSLEGTSITGMFPAALGNLTNLDTLSLAHCTFNAPQTLESL 290
Query: 340 ------------------SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
SL+ L G+S L+++ L +TD L L L ++DL
Sbjct: 291 SKLRSLKQLNLNDCKNITSLKFLRGMSHLEAIGLKNTNLTDAILKELQYCLQLKYVDLTR 350
Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
RI + + K L+++ + G + + I+
Sbjct: 351 CRIGKETISTISQLKLLQTISLSGTQIDSDNIIPIR 386
>gi|255524523|ref|ZP_05391478.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
gi|296186022|ref|ZP_06854427.1| leucine Rich repeat protein [Clostridium carboxidivorans P7]
gi|255511819|gb|EET88104.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
gi|296049290|gb|EFG88719.1| leucine Rich repeat protein [Clostridium carboxidivorans P7]
Length = 683
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 100/336 (29%), Positives = 165/336 (49%), Gaps = 53/336 (15%)
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
Q + L NL LDL + ++I + LK L KL++L N SD+ PL LT+
Sbjct: 371 QDISGIENLTNLQFLDLSQ-SKI-SDISELKNLTKLQTL---LLNDNEISDISPLQNLTD 425
Query: 182 LKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
LK L + ++++D + + YL L +L L N ++ L L +L L L++ Q+
Sbjct: 426 LKQLDLEENRISDITPLQYLSDLNELYLKNNRITNISK-----LEWLTNLKILYLSQNQI 480
Query: 241 SD-DGCEKFSKIGSLKVLNL-------GFNEITDECL--------------VHLKGLTNL 278
SD +++ + K N+ DE L +++ + N+
Sbjct: 481 SDYSPVKRYYDNLTDKDFNMTNSTDSKDIVTFKDENLEKAVRDKINKETGDIYITDVKNI 540
Query: 279 ESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
SLN I D G+ NLT L + L+L + QV S + LS LTNLE++NLS+ S
Sbjct: 541 VSLNASHKNIKDISGIENLTSL---QTLDLGNNQV--SDISVLSSLTNLETLNLSYNEFS 595
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
D + KL GLS L++LNL++ +I D ++A+ +L L L+L +I++ L+ N
Sbjct: 596 D--ISKLKGLSKLETLNLNSNEIGD--ISAIQTLNNLKSLNLSNCKISNINP--LKGLNN 649
Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
L++L + ++D+ + +KD S NCN+
Sbjct: 650 LKTLWLNNNEMSDSDKEALKDALS--------NCNI 677
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 108/417 (25%), Positives = 176/417 (42%), Gaps = 88/417 (21%)
Query: 97 GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI-------------NLV---KLDLER 140
+ LRGL+NL L +N + +++ I N+V ++LE+
Sbjct: 280 NNINALRGLTNLNLLYLGQNEILDYSPTRSYYAKILNKDFDLIDSNDDNIVTFKDINLEK 339
Query: 141 CTRIH----GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
R G + + K+ SL N D+ + LTNL+ L +S SK++D
Sbjct: 340 AVRSEINKPSGDIYKSDVEKIVSLQPYHENI---QDISGIENLTNLQFLDLSQSKISD-- 394
Query: 197 IAYLKGLQKL-TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
I+ LK L KL TLL LN ++SD + LK
Sbjct: 395 ISELKNLTKLQTLL-------------------------LNDNEISD--ISPLQNLTDLK 427
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG-- 313
L+L N I+D + L+ L++L L L + I + L L NLK L LS Q+
Sbjct: 428 QLDLEENRISD--ITPLQYLSDLNELYLKNNRIT--NISKLEWLTNLKILYLSQNQISDY 483
Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-----TGLAAL 368
S R+ LT+ + + T +D + + K NL+ + + D TG +
Sbjct: 484 SPVKRYYDNLTDKD---FNMTNSTDS-----KDIVTFKDENLE-KAVRDKINKETGDIYI 534
Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
T + + L+ I D + +NL SL+ D G + D+S L+ L
Sbjct: 535 TDVKNIVSLNASHKNIKD-----ISGIENLTSLQTL-----DLGNNQVSDISVLSSLTNL 584
Query: 429 QNCNLTDKTLELIS---GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
+ NL+ IS GL+ L +LN++++ I + ++ L NL+SL L +CK++
Sbjct: 585 ETLNLSYNEFSDISKLKGLSKLETLNLNSNEI--GDISAIQTLNNLKSLNLSNCKIS 639
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 99/370 (26%), Positives = 172/370 (46%), Gaps = 58/370 (15%)
Query: 171 SDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
S++ +SG+ NL +LQI + S+ S ++ L+ L L L+L ++ ++ L L +
Sbjct: 167 SNIDDISGIENLANLQILNLSQNQLSHVSVLRYLDYLRDLDLSQNKISD--INELRGLNN 224
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L+ LNLN ++SD K+ ++ L L NEITD + L+ L NL+ L+L + I
Sbjct: 225 LYSLNLNNNEISDINELKY--FTYMRTLLLNNNEITD--ISPLQKLINLQQLSLKNNRIN 280
Query: 290 DEGLVNLTGLCNLKCLELSDTQV-GSSGLRHL----------------SGLTNLESINLS 332
+ L GL NL L L ++ S R + + INL
Sbjct: 281 --NINALRGLTNLNLLYLGQNEILDYSPTRSYYAKILNKDFDLIDSNDDNIVTFKDINLE 338
Query: 333 FTGISD-----GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
S+ G + K + + + SL I D ++ + +LT L LDL ++I+D
Sbjct: 339 KAVRSEINKPSGDIYK-SDVEKIVSLQPYHENIQD--ISGIENLTNLQFLDLSQSKISD- 394
Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTG 446
+ L+N L++L + ++D + +++L+ L L+L +N ++D T L+ +S L
Sbjct: 395 -ISELKNLTKLQTLLLNDNEISD--ISPLQNLTDLKQLDLEENR-ISDITPLQYLSDLNE 450
Query: 447 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV-------------TANDIKRLQSRD 493
L + N+RIT + L+ L NL+ L L ++ T D S D
Sbjct: 451 LY---LKNNRIT--NISKLEWLTNLKILYLSQNQISDYSPVKRYYDNLTDKDFNMTNSTD 505
Query: 494 LPNLVSFRPE 503
++V+F+ E
Sbjct: 506 SKDIVTFKDE 515
>gi|219821351|gb|ACL37812.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVKYKV 368
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 87
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|83747318|ref|ZP_00944359.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
gi|207739111|ref|YP_002257504.1| type III effector protein gala2 [Ralstonia solanacearum IPO1609]
gi|83726018|gb|EAP73155.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
gi|206592484|emb|CAQ59390.1| type III effector protein gala2 [Ralstonia solanacearum IPO1609]
Length = 978
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 108/376 (28%), Positives = 172/376 (45%), Gaps = 7/376 (1%)
Query: 58 SLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
S+ +DLSG S V+++GL L L+SLD + +I D ++ L ++LTSL+
Sbjct: 575 SVRHLDLSGCTGSAVSEAGLAVLARLP-LESLDLS-GTRIGDREVQALASSTSLTSLNLS 632
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N I G +A L L++ G+ L L SL ++ I ++ +
Sbjct: 633 -GNRIGNAGAQALGRNTVLTALNVSANPIGDAGVQALADSRSLTSLELRGIG-IGEAGIA 690
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L+ T L+SL IS + +++ A L Q L L C +T + L+ + SL L
Sbjct: 691 ALASNTVLRSLDISSNDLSEQSAAELARNQTLASLKANACGLTNSMAQQLARIRSLRTLE 750
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+ + D G ++ SL+ LNL N IT + L L+ L SL++ G GD G +
Sbjct: 751 VGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLRPLELSRTLTSLDVSGIGCGDRGAL 810
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
L+ L L+L +GS+G + L+ L S++L I + + LA L SLN
Sbjct: 811 LLSKNRALTSLKLGFNGIGSAGAQGLAANRTLISLDLRGNTIDVDAAKALANTGCLTSLN 870
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
+ ++ D +AL LT LD+ R++ A L L SL I + G +
Sbjct: 871 VSDCKLDDEAASALAESLTLTSLDVSVNRLSGQAARALAGNATLTSLNISHNHIGPDGAQ 930
Query: 415 HIKDLSSLTLLNLSQN 430
+ + SLT L+ N
Sbjct: 931 ALAESPSLTSLDARAN 946
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 99/351 (28%), Positives = 156/351 (44%), Gaps = 4/351 (1%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ D+ + +AS +SL S++LSG+ + ++G L + L +L+ + I D G++ L
Sbjct: 612 IGDREVQALASS-TSLTSLNLSGNRIGNAGAQALGRNTVLTALNVS-ANPIGDAGVQALA 669
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
+LTSL R I G+ A A L LD+ L L SL
Sbjct: 670 DSRSLTSLELR-GIGIGEAGIAALASNTVLRSLDISSNDLSEQSAAELARNQTLASLKAN 728
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
C +T+S + L+ + +L++L++ + + D+G+ + L LNL P+T L
Sbjct: 729 ACG-LTNSMAQQLARIRSLRTLEVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLRP 787
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L +L L+++ D G SK +L L LGFN I L L SL+L
Sbjct: 788 LELSRTLTSLDVSGIGCGDRGALLLSKNRALTSLKLGFNGIGSAGAQGLAANRTLISLDL 847
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
I + L L L +SD ++ L+ L S+++S +S + R
Sbjct: 848 RGNTIDVDAAKALANTGCLTSLNVSDCKLDDEAASALAESLTLTSLDVSVNRLSGQAARA 907
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
LAG ++L SLN+ I G AL LT LD I ++GA L N
Sbjct: 908 LAGNATLTSLNISHNHIGPDGAQALAESPSLTSLDARANGIGEAGARALEN 958
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 104/197 (52%), Gaps = 1/197 (0%)
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
LESL+L IGD + L +L L LS ++G++G + L T L ++N+S I
Sbjct: 602 LESLDLSGTRIGDREVQALASSTSLTSLNLSGNRIGNAGAQALGRNTVLTALNVSANPIG 661
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
D ++ LA SL SL L I + G+AAL S T L LD+ +++ AA L +
Sbjct: 662 DAGVQALADSRSLTSLELRGIGIGEAGIAALASNTVLRSLDISSNDLSEQSAAELARNQT 721
Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
L SL+ GLT++ + + + SL L + N ++ D + I+ L +LN+S++ I
Sbjct: 722 LASLKANACGLTNSMAQQLARIRSLRTLEVGSN-SIGDTGVLAIARNASLRTLNLSHNPI 780
Query: 458 TSAGLRHLKPLKNLRSL 474
T GLR L+ + L SL
Sbjct: 781 TLQGLRPLELSRTLTSL 797
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 130/291 (44%), Gaps = 16/291 (5%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G+ + + +AS + L S+D+S +D+++ L L SL N C +++ + L
Sbjct: 683 GIGEAGIAALASN-TVLRSLDISSNDLSEQSAAELARNQTLASLKANAC-GLTNSMAQQL 740
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE---- 158
+ +L +L +N+I G+ A A +L L+L + L+GL LE
Sbjct: 741 ARIRSLRTLEVG-SNSIGDTGVLAIARNASLRTLNLSHNP------ITLQGLRPLELSRT 793
Query: 159 --SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
SL++ C D LS L SL++ + + +G L + L L+L G +
Sbjct: 794 LTSLDVSGIGC-GDRGALLLSKNRALTSLKLGFNGIGSAGAQGLAANRTLISLDLRGNTI 852
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
+L+ G L LN++ C+L D+ ++ +L L++ N ++ + L G
Sbjct: 853 DVDAAKALANTGCLTSLNVSDCKLDDEAASALAESLTLTSLDVSVNRLSGQAARALAGNA 912
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
L SLN+ IG +G L +L L+ +G +G R L T ++
Sbjct: 913 TLTSLNISHNHIGPDGAQALAESPSLTSLDARANGIGEAGARALENNTRMQ 963
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 84/180 (46%), Gaps = 19/180 (10%)
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
E + +L GL LESLN+ IGD+G L +L+ L ++ +G++G R L+ L
Sbjct: 145 EAIAYLAGLP-LESLNVAGADIGDDGARLLAANPSLRALNAANGGIGAAGARALAESPVL 203
Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL------- 379
S++L+ GI D R LA SL +L + +TD G AL LT LDL
Sbjct: 204 ASLDLTRNGIGDEGARALADSRSLTNLAVLNCLVTDVGARALAGNGTLTALDLGNLITET 263
Query: 380 -----------FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
IT GA L ++L SL I G D GV+ + +LT LN++
Sbjct: 264 GNELEQAGYDRTANEITARGAWALAQNRSLTSLSIQGNLCGDGGVQALAKNRTLTSLNVA 323
Score = 39.3 bits (90), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 376 HLDL---FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
HLDL G+ ++++G A L L SL++ G + D V+ + +SLT LNLS N
Sbjct: 578 HLDLSGCTGSAVSEAGLAVLARLP-LESLDLSGTRIGDREVQALASSTSLTSLNLSGN-R 635
Query: 433 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 491
+ + + + T L +LNVS + I AG++ L ++L SL L + I L S
Sbjct: 636 IGNAGAQALGRNTVLTALNVSANPIGDAGVQALADSRSLTSLELRGIGIGEAGIAALAS 694
>gi|85679220|gb|ABC72026.1| InlA [Listeria monocytogenes]
Length = 794
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 203 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 255
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 256 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 309
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 310 SPLAGLAALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 367
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 368 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKT 425
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 426 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 458
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 91 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 143
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 144 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 198
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 199 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 256
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 257 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 307
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 308 -NISPLAGLAALT 319
>gi|290980460|ref|XP_002672950.1| predicted protein [Naegleria gruberi]
gi|284086530|gb|EFC40206.1| predicted protein [Naegleria gruberi]
Length = 331
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 105/210 (50%), Gaps = 4/210 (1%)
Query: 244 GCEKFSKIGSLKVL---NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
G EK I +K L ++ +N I E + + L SLN++ IG EG ++G+
Sbjct: 121 GIEKLKFISEMKQLISLDISYNRIDGEGAKLISEMKQLTSLNINGNVIGGEGAKFISGMK 180
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
L L + + ++G G +++S + L S+++ I D ++ ++ + L SLN+ I
Sbjct: 181 QLTSLYIYNNRIGGEGAKYISEMKQLISLDIGGNQIGDEEVKLISEMKQLTSLNIANNVI 240
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
D G + + LT L++ I D GA Y+ K L SL I + +AG K I ++
Sbjct: 241 GDAGAKFIGDMKQLTSLNISYNVIGDEGAKYINEMKQLTSLNITRNEIGNAGAKFISEMK 300
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
LT L+++ N + + + IS + L+SL
Sbjct: 301 QLTSLDIAGN-RIGGEGAKFISEMKQLISL 329
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 105/214 (49%), Gaps = 3/214 (1%)
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
G E L ++ + L L++S ++ G + +S + L S+N++ I + ++G+
Sbjct: 121 GIEKLKFISEMKQLISLDISYNRIDGEGAKLISEMKQLTSLNINGNVIGGEGAKFISGMK 180
Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
L SL + +I G ++ + L LD+ G +I D + K L SL I +
Sbjct: 181 QLTSLYIYNNRIGGEGAKYISEMKQLISLDIGGNQIGDEEVKLISEMKQLTSLNIANNVI 240
Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 468
DAG K I D+ LT LN+S N + D+ + I+ + L SLN++ + I +AG + + +
Sbjct: 241 GDAGAKFIGDMKQLTSLNISYNV-IGDEGAKYINEMKQLTSLNITRNEIGNAGAKFISEM 299
Query: 469 KNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 502
K L SL + ++ K + ++ L+S R
Sbjct: 300 KQLTSLDIAGNRIGGEGAKFIS--EMKQLISLRK 331
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 98/202 (48%)
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
L +S + L L+++ ++ +G + S++ L LN+ N I E + G+ L S
Sbjct: 125 LKFISEMKQLISLDISYNRIDGEGAKLISEMKQLTSLNINGNVIGGEGAKFISGMKQLTS 184
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
L + + IG EG ++ + L L++ Q+G ++ +S + L S+N++ I D
Sbjct: 185 LYIYNNRIGGEGAKYISEMKQLISLDIGGNQIGDEEVKLISEMKQLTSLNIANNVIGDAG 244
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
+ + + L SLN+ I D G + + LT L++ I ++GA ++ K L S
Sbjct: 245 AKFIGDMKQLTSLNISYNVIGDEGAKYINEMKQLTSLNITRNEIGNAGAKFISEMKQLTS 304
Query: 401 LEICGGGLTDAGVKHIKDLSSL 422
L+I G + G K I ++ L
Sbjct: 305 LDIAGNRIGGEGAKFISEMKQL 326
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 106/229 (46%), Gaps = 24/229 (10%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+K +S + L SL IS +++ G + +++LT LN+ G + +S + L
Sbjct: 125 LKFISEMKQLISLDISYNRIDGEGAKLISEMKQLTSLNINGNVIGGEGAKFISGMKQLTS 184
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L + ++ +G + S++ L L++G N+I DE + + + L SLN+ + IGD
Sbjct: 185 LYIYNNRIGGEGAKYISEMKQLISLDIGGNQIGDEEVKLISEMKQLTSLNIANNVIGD-- 242
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
+G + + + L S+N+S+ I D + + + L S
Sbjct: 243 ----------------------AGAKFIGDMKQLTSLNISYNVIGDEGAKYINEMKQLTS 280
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
LN+ +I + G ++ + LT LD+ G RI GA ++ K L SL
Sbjct: 281 LNITRNEIGNAGAKFISEMKQLTSLDIAGNRIGGEGAKFISEMKQLISL 329
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 88/173 (50%), Gaps = 12/173 (6%)
Query: 329 INLSFTGISDGSLRKLAGLSSLK---SLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
+NL F G G + KL +S +K SL++ +I G ++ + LT L++ G I
Sbjct: 110 VNLKFLGYLLGGIEKLKFISEMKQLISLDISYNRIDGEGAKLISEMKQLTSLNINGNVIG 169
Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 445
GA ++ K L SL I + G K+I ++ L L++ N + D+ ++LIS +
Sbjct: 170 GEGAKFISGMKQLTSLYIYNNRIGGEGAKYISEMKQLISLDIGGN-QIGDEEVKLISEMK 228
Query: 446 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTL-------ESCKVTANDIKRLQS 491
L SLN++N+ I AG + + +K L SL + E K N++K+L S
Sbjct: 229 QLTSLNIANNVIGDAGAKFIGDMKQLTSLNISYNVIGDEGAKYI-NEMKQLTS 280
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 103/211 (48%), Gaps = 4/211 (1%)
Query: 146 GGLVNLKGLMKLE---SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
GG+ LK + +++ SL+I + N I K +S + L SL I+ + + G ++ G
Sbjct: 120 GGIEKLKFISEMKQLISLDISY-NRIDGEGAKLISEMKQLTSLNINGNVIGGEGAKFISG 178
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+++LT L + + +S + L L++ Q+ D+ + S++ L LN+ N
Sbjct: 179 MKQLTSLYIYNNRIGGEGAKYISEMKQLISLDIGGNQIGDEEVKLISEMKQLTSLNIANN 238
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
I D + + L SLN+ IGDEG + + L L ++ ++G++G + +S
Sbjct: 239 VIGDAGAKFIGDMKQLTSLNISYNVIGDEGAKYINEMKQLTSLNITRNEIGNAGAKFISE 298
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
+ L S++++ I + ++ + L SL
Sbjct: 299 MKQLTSLDIAGNRIGGEGAKFISEMKQLISL 329
>gi|219821360|gb|ACL37818.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKV 368
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|371942068|gb|AEX60846.1| internaline [Listeria monocytogenes]
gi|371942088|gb|AEX60856.1| internaline [Listeria monocytogenes]
gi|371942106|gb|AEX60865.1| internaline [Listeria monocytogenes]
gi|371942134|gb|AEX60879.1| internaline [Listeria monocytogenes]
Length = 790
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|112959444|gb|ABI27249.1| truncated internalin A [Listeria monocytogenes]
gi|112959490|gb|ABI27272.1| truncated internalin A [Listeria monocytogenes]
Length = 542
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTGLKLGANQISN--I 247
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 248 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 305
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 306 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 363
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 364 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 27 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 83 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 135
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 136 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 191
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 192 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTGLKLGANQIS- 245
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 246 ----NISPLAGLTALT 257
>gi|130774791|gb|ABO32410.1| InlA [Listeria monocytogenes]
gi|298360240|gb|ADI77699.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|71912408|gb|AAZ53236.1| InlA [Listeria monocytogenes]
Length = 800
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|298360200|gb|ADI77679.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|126143308|gb|ABN80096.1| InlA [Listeria monocytogenes]
Length = 800
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITPLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|371942140|gb|AEX60882.1| internaline [Listeria monocytogenes]
Length = 790
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|298359764|gb|ADI77461.1| truncated internalin A [Listeria monocytogenes]
gi|298359862|gb|ADI77510.1| truncated internalin A [Listeria monocytogenes]
gi|298360070|gb|ADI77614.1| truncated internalin A [Listeria monocytogenes]
gi|298360108|gb|ADI77633.1| truncated internalin A [Listeria monocytogenes]
gi|298360174|gb|ADI77666.1| truncated internalin A [Listeria monocytogenes]
gi|298360196|gb|ADI77677.1| truncated internalin A [Listeria monocytogenes]
gi|298360268|gb|ADI77713.1| truncated internalin A [Listeria monocytogenes]
gi|298360290|gb|ADI77724.1| truncated internalin A [Listeria monocytogenes]
gi|298360536|gb|ADI77847.1| truncated internalin A [Listeria monocytogenes]
gi|298360608|gb|ADI77883.1| truncated internalin A [Listeria monocytogenes]
gi|298360658|gb|ADI77908.1| truncated internalin A [Listeria monocytogenes]
gi|298360684|gb|ADI77921.1| truncated internalin A [Listeria monocytogenes]
Length = 605
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTGLKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTGLKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|150371888|dbj|BAF65733.1| internalin A [Listeria monocytogenes]
gi|150371890|dbj|BAF65734.1| internalin A [Listeria monocytogenes]
Length = 797
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|298360700|gb|ADI77929.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|112959452|gb|ABI27253.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 247
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 248 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 305
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 306 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 363
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 364 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 27 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 83 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 135
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 136 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 191
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 192 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 245
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 246 ----NISPLAGLTALT 257
>gi|386042770|ref|YP_005961575.1| internalin A [Listeria monocytogenes 10403S]
gi|404409675|ref|YP_006695263.1| internalin A [Listeria monocytogenes SLCC5850]
gi|403399436|sp|G2K3G6.1|INLA_LISM4 RecName: Full=Internalin-A; Flags: Precursor
gi|150371722|dbj|BAF65676.1| internalin A [Listeria monocytogenes]
gi|150371786|dbj|BAF65682.1| internalin A [Listeria monocytogenes]
gi|150371800|dbj|BAF65689.1| internalin A [Listeria monocytogenes]
gi|150371810|dbj|BAF65694.1| internalin A [Listeria monocytogenes]
gi|150371812|dbj|BAF65695.1| internalin A [Listeria monocytogenes]
gi|150371816|dbj|BAF65697.1| internalin A [Listeria monocytogenes]
gi|150371826|dbj|BAF65702.1| internalin A [Listeria monocytogenes]
gi|150371840|dbj|BAF65709.1| internalin A [Listeria monocytogenes]
gi|150371842|dbj|BAF65710.1| internalin A [Listeria monocytogenes]
gi|150371862|dbj|BAF65720.1| internalin A [Listeria monocytogenes]
gi|150371866|dbj|BAF65722.1| internalin A [Listeria monocytogenes]
gi|167861902|gb|ACA05650.1| InlA [Listeria monocytogenes]
gi|167861984|gb|ACA05691.1| InlA [Listeria monocytogenes]
gi|167862000|gb|ACA05699.1| InlA [Listeria monocytogenes]
gi|167862006|gb|ACA05702.1| InlA [Listeria monocytogenes]
gi|194239412|emb|CAQ76846.1| internalin A [Listeria monocytogenes]
gi|223006784|gb|ACM69349.1| internalin A [Listeria monocytogenes]
gi|298359776|gb|ADI77467.1| internalin A [Listeria monocytogenes]
gi|298359804|gb|ADI77481.1| internalin A [Listeria monocytogenes]
gi|298359874|gb|ADI77516.1| internalin A [Listeria monocytogenes]
gi|298360072|gb|ADI77615.1| internalin A [Listeria monocytogenes]
gi|298360106|gb|ADI77632.1| internalin A [Listeria monocytogenes]
gi|298360118|gb|ADI77638.1| internalin A [Listeria monocytogenes]
gi|298360218|gb|ADI77688.1| internalin A [Listeria monocytogenes]
gi|298360262|gb|ADI77710.1| internalin A [Listeria monocytogenes]
gi|298360280|gb|ADI77719.1| internalin A [Listeria monocytogenes]
gi|298360386|gb|ADI77772.1| internalin A [Listeria monocytogenes]
gi|298360468|gb|ADI77813.1| internalin A [Listeria monocytogenes]
gi|298360570|gb|ADI77864.1| internalin A [Listeria monocytogenes]
gi|298360722|gb|ADI77940.1| internalin A [Listeria monocytogenes]
gi|302034307|gb|ADK92307.1| internalin A [Listeria monocytogenes]
gi|302034309|gb|ADK92308.1| internalin A [Listeria monocytogenes]
gi|302034311|gb|ADK92309.1| internalin A [Listeria monocytogenes]
gi|302034313|gb|ADK92310.1| internalin A [Listeria monocytogenes]
gi|302034319|gb|ADK92313.1| internalin A [Listeria monocytogenes]
gi|302034321|gb|ADK92314.1| internalin A [Listeria monocytogenes]
gi|302034323|gb|ADK92315.1| internalin A [Listeria monocytogenes]
gi|302034325|gb|ADK92316.1| internalin A [Listeria monocytogenes]
gi|345536004|gb|AEO05444.1| internalin A [Listeria monocytogenes 10403S]
gi|404229501|emb|CBY50905.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC5850]
gi|443428772|gb|AGC92185.1| internalin A [Listeria monocytogenes]
gi|443428780|gb|AGC92189.1| internalin A [Listeria monocytogenes]
gi|443428864|gb|AGC92231.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|219821375|gb|ACL37828.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKV 368
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 34 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 86
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 87 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 141
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 142 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 199
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 200 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 250
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 251 -NISPLAGLTALT 262
>gi|371942070|gb|AEX60847.1| internaline [Listeria monocytogenes]
Length = 789
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|219821390|gb|ACL37838.1| internalin A [Listeria monocytogenes]
Length = 744
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKT 368
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 34 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 86
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 87 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 141
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 142 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 199
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 200 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 250
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 251 -NISPLAGLTALT 262
>gi|47092503|ref|ZP_00230292.1| internalin A [Listeria monocytogenes str. 4b H7858]
gi|417314487|ref|ZP_12101186.1| internalin A [Listeria monocytogenes J1816]
gi|47019095|gb|EAL09839.1| internalin A [Listeria monocytogenes str. 4b H7858]
gi|130774783|gb|ABO32406.1| InlA [Listeria monocytogenes]
gi|130774787|gb|ABO32408.1| InlA [Listeria monocytogenes]
gi|167861878|gb|ACA05638.1| InlA [Listeria monocytogenes]
gi|167861926|gb|ACA05662.1| InlA [Listeria monocytogenes]
gi|194239406|emb|CAQ76843.1| internalin A [Listeria monocytogenes]
gi|223006800|gb|ACM69357.1| internalin A [Listeria monocytogenes]
gi|223006808|gb|ACM69361.1| internalin A [Listeria monocytogenes]
gi|294358399|gb|ADE73852.1| InlA [Listeria monocytogenes]
gi|298359958|gb|ADI77558.1| internalin A [Listeria monocytogenes]
gi|298359988|gb|ADI77573.1| internalin A [Listeria monocytogenes]
gi|298360010|gb|ADI77584.1| internalin A [Listeria monocytogenes]
gi|298360208|gb|ADI77683.1| internalin A [Listeria monocytogenes]
gi|298360370|gb|ADI77764.1| internalin A [Listeria monocytogenes]
gi|298360402|gb|ADI77780.1| internalin A [Listeria monocytogenes]
gi|298360472|gb|ADI77815.1| internalin A [Listeria monocytogenes]
gi|298360544|gb|ADI77851.1| internalin A [Listeria monocytogenes]
gi|298360592|gb|ADI77875.1| internalin A [Listeria monocytogenes]
gi|328467733|gb|EGF38785.1| internalin A [Listeria monocytogenes J1816]
gi|443428820|gb|AGC92209.1| truncated internalin A [Listeria monocytogenes]
gi|443428844|gb|AGC92221.1| truncated internalin A [Listeria monocytogenes]
gi|443428846|gb|AGC92222.1| truncated internalin A [Listeria monocytogenes]
gi|443428850|gb|AGC92224.1| truncated internalin A [Listeria monocytogenes]
gi|443428854|gb|AGC92226.1| truncated internalin A [Listeria monocytogenes]
gi|443428856|gb|AGC92227.1| truncated internalin A [Listeria monocytogenes]
Length = 797
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|313485052|gb|ADR53000.1| InlA [Listeria monocytogenes]
Length = 771
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|167862012|gb|ACA05705.1| InlA [Listeria monocytogenes]
Length = 797
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|405954703|gb|EKC22070.1| F-box/LRR-repeat protein 14 [Crassostrea gigas]
Length = 403
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 98/306 (32%), Positives = 164/306 (53%), Gaps = 36/306 (11%)
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLF--------YLNLNRC-QLSDDGCEKFSK-I 251
G+ + LNL GC V ALG F LNL+ C Q++D+ + ++ +
Sbjct: 95 GIPNVETLNLSGCFVVTD-----HALGHAFSQDLPCMTVLNLSLCKQITDNSLGRIAQYL 149
Query: 252 GSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTG--------LC 300
+L+VL LG + IT+ L+ + GL L++LNL SC I D G+ +L G
Sbjct: 150 TNLEVLELGGCSNITNTGLLLIAWGLRKLKTLNLRSCRHISDVGIGHLAGNSPNAAAGTL 209
Query: 301 NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA 357
++ L L D Q + L+HLS GL NL+++NLSF G ++D ++ L+ + +++ +NL +
Sbjct: 210 EIENLGLQDCQKLTDLSLKHLSCGLVNLKTLNLSFCGSVTDSGVKFLSKMQTMREINLRS 269
Query: 358 -RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV 413
I+D GL L + +T LD+ F ++ D G +L + +LR++ + ++D G+
Sbjct: 270 CDNISDVGLGYLAEGGSRITSLDVSFCDKVGDEGLVHLAQGLFSLRNISLSACNISDEGL 329
Query: 414 KH-IKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKN 470
+ L +T LN+ Q +TDK L LI+ L L S+++ +RIT+ GL + L+
Sbjct: 330 NRLVNTLQDITTLNIGQCVRITDKGLSLIADHLKNLQSIDLYGCTRITTVGLERIMQLRG 389
Query: 471 LRSLTL 476
L +L L
Sbjct: 390 LTTLNL 395
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 116/397 (29%), Positives = 192/397 (48%), Gaps = 44/397 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L++ S V D G + + C + + +N C+ HLR R N
Sbjct: 17 PEVLTIIFSYLSVRDKGRVA-QVCVKWRDVAYNRCVWRGVCAKLHLR----------RAN 65
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
++ +K G+ + L L+R R + G+ +E+LN+ C +TD +
Sbjct: 66 PSLFPSLVKR--GIKRVQILSLKRSLRD-----VVVGIPNVETLNLSGCFVVTDHALGHA 118
Query: 177 --SGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCP--VTAACLDSLSALGSL 230
L + L +S C ++TD+ + + + L L +L L GC L L L
Sbjct: 119 FSQDLPCMTVLNLSLCKQITDNSLGRIAQYLTNLEVLELGGCSNITNTGLLLIAWGLRKL 178
Query: 231 FYLNLNRCQ-LSDDGCEKF------SKIGSLKVLNLGFNE---ITDECLVHLK-GLTNLE 279
LNL C+ +SD G + G+L++ NLG + +TD L HL GL NL+
Sbjct: 179 KTLNLRSCRHISDVGIGHLAGNSPNAAAGTLEIENLGLQDCQKLTDLSLKHLSCGLVNLK 238
Query: 280 SLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLS-GLTNLESINLSFT-G 335
+LNL CG + D G+ L+ + ++ + L S + GL +L+ G + + S+++SF
Sbjct: 239 TLNLSFCGSVTDSGVKFLSKMQTMREINLRSCDNISDVGLGYLAEGGSRITSLDVSFCDK 298
Query: 336 ISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYL 392
+ D L LA GL SL++++L A I+D GL L +L +T L++ RITD G + +
Sbjct: 299 VGDEGLVHLAQGLFSLRNISLSACNISDEGLNRLVNTLQDITTLNIGQCVRITDKGLSLI 358
Query: 393 R-NFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 427
+ KNL+S+++ G +T G++ I L LT LNL
Sbjct: 359 ADHLKNLQSIDLYGCTRITTVGLERIMQLRGLTTLNL 395
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 141/279 (50%), Gaps = 42/279 (15%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA ++L ++L G S++T++GL+ + L++L+ C ISD G+ H
Sbjct: 137 ITDNSLGRIAQYLTNLEVLELGGCSNITNTGLLLIAWGLRKLKTLNLRSCRHISDVGIGH 196
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK----GLMKL 157
L G S A AG + + L L+ C ++ ++LK GL+ L
Sbjct: 197 LAGNSP-----------------NAAAGTLEIENLGLQDCQKLTD--LSLKHLSCGLVNL 237
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP 215
++LN+ +C +TDS +K LS + ++ + + SC ++D G+ YL +G ++T L++ C
Sbjct: 238 KTLNLSFCGSVTDSGVKFLSKMQTMREINLRSCDNISDVGLGYLAEGGSRITSLDVSFCD 297
Query: 216 VTA--ACLDSLSALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNLG-FNEITDECLV- 270
+ L SL ++L+ C +SD+G + + + + LN+G ITD+ L
Sbjct: 298 KVGDEGLVHLAQGLFSLRNISLSACNISDEGLNRLVNTLQDITTLNIGQCVRITDKGLSL 357
Query: 271 ---HLKGLTNLESLNLDSC----GIGDEGLVNLTGLCNL 302
HLK NL+S++L C +G E ++ L GL L
Sbjct: 358 IADHLK---NLQSIDLYGCTRITTVGLERIMQLRGLTTL 393
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 122/244 (50%), Gaps = 34/244 (13%)
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL---------ELSDTQVGSSGLRHLSGLT 324
G+ N+E+LNL C + + + +L C+ +++D +G R LT
Sbjct: 95 GIPNVETLNLSGCFVVTDHALGHAFSQDLPCMTVLNLSLCKQITDNSLG----RIAQYLT 150
Query: 325 NLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALT-----SLTGLTH 376
NLE + L + I++ L +A GL LK+LNL + R I+D G+ L + G
Sbjct: 151 NLEVLELGGCSNITNTGLLLIAWGLRKLKTLNLRSCRHISDVGIGHLAGNSPNAAAGTLE 210
Query: 377 LDLFG----ARITDSGAAYLR----NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
++ G ++TD +L N K L +L CG +TD+GVK + + ++ +NL
Sbjct: 211 IENLGLQDCQKLTDLSLKHLSCGLVNLKTL-NLSFCGS-VTDSGVKFLSKMQTMREINLR 268
Query: 429 QNCNLTDKTL-ELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAND 485
N++D L L G + + SL+VS ++ GL HL + L +LR+++L +C ++
Sbjct: 269 SCDNISDVGLGYLAEGGSRITSLDVSFCDKVGDEGLVHLAQGLFSLRNISLSACNISDEG 328
Query: 486 IKRL 489
+ RL
Sbjct: 329 LNRL 332
>gi|371942090|gb|AEX60857.1| internaline [Listeria monocytogenes]
Length = 790
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D + L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGVEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 459 SAGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|443428800|gb|AGC92199.1| truncated internalin A [Listeria monocytogenes]
gi|443428802|gb|AGC92200.1| truncated internalin A [Listeria monocytogenes]
gi|443428806|gb|AGC92202.1| truncated internalin A [Listeria monocytogenes]
gi|443428824|gb|AGC92211.1| truncated internalin A [Listeria monocytogenes]
gi|443428830|gb|AGC92214.1| truncated internalin A [Listeria monocytogenes]
gi|443428832|gb|AGC92215.1| truncated internalin A [Listeria monocytogenes]
gi|443428834|gb|AGC92216.1| truncated internalin A [Listeria monocytogenes]
Length = 797
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|85679236|gb|ABC72034.1| InlA [Listeria monocytogenes]
Length = 794
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 203 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 255
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 256 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 309
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 310 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 367
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 368 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKT 425
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 426 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 458
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 91 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 143
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 144 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 198
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 199 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 256
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 257 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 307
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 308 -NISPLAGLTALT 319
>gi|371942076|gb|AEX60850.1| internaline [Listeria monocytogenes]
gi|371942078|gb|AEX60851.1| internaline [Listeria monocytogenes]
gi|371942082|gb|AEX60853.1| internaline [Listeria monocytogenes]
Length = 789
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 459 SAGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|298359924|gb|ADI77541.1| internalin A [Listeria monocytogenes]
gi|298359926|gb|ADI77542.1| internalin A [Listeria monocytogenes]
gi|298360172|gb|ADI77665.1| internalin A [Listeria monocytogenes]
gi|298360388|gb|ADI77773.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|219821294|gb|ACL37774.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKV 368
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|130774815|gb|ABO32420.1| InlA [Listeria monocytogenes]
gi|194239404|emb|CAQ76842.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|112961667|gb|ABI28464.1| truncated internalin A [Listeria monocytogenes]
Length = 556
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTGLKLGANQISN--I 261
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 262 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 319
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 320 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 377
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 378 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 41 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 96
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 97 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 149
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 150 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 205
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 206 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTGLKLGANQIS- 259
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 260 ----NISPLAGLTALT 271
>gi|171912739|ref|ZP_02928209.1| Leucine-rich repeat [Verrucomicrobium spinosum DSM 4136]
Length = 443
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 128/425 (30%), Positives = 194/425 (45%), Gaps = 61/425 (14%)
Query: 20 LTEVSLEAFRDCALQDLCLG-QYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLK 78
L EV LE L+ L LG Y KW + S + G+ S L HL
Sbjct: 34 LDEVPLEVAELSHLRQLSLGWNYSPSAKKW-----NPDRSFFN---PGAMSNLSELAHLP 85
Query: 79 -DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
+ +L++ FN C + G LR L NL S S+ RN ++ + L L L+
Sbjct: 86 LEWLDLRATGFNNCAALE--GFSALRSL-NL-SHSYVRN-------IEPLSALSQLQCLE 134
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD--- 194
L C + + K L +L +L + SD++PL+ L L+ L I +KVTD
Sbjct: 135 L--C---QTQVTDFKPLQRLGALQQLDLYSTSVSDLEPLAALHALQQLNICSTKVTDLEP 189
Query: 195 --------------SGIAYLKGLQKLTLL-NLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
+G+ L L K+T L LE LD+L+ L L L+L+ +
Sbjct: 190 LAGLSSLRQFNFSFTGVTELDPLAKITTLQQLEFRLAPIFDLDALAGLRELQKLDLSTTE 249
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
+ D E S +G+L+ L ++D L L GL+ L L+L C + L GL
Sbjct: 250 VRD--LEPLSGLGALQKLYFNHTAVSD--LGPLAGLSALRKLDL-RCARRVTDIGPLAGL 304
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
L+ L L+ TQV + L L+ L NL+ ++LS T +SD L L L++L+SL L + Q
Sbjct: 305 HALQRLILASTQV--TDLTPLTELRNLQHLDLSRTKVSD--LSPLTSLTALRSLGLTSTQ 360
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD----AGVKH 415
++D LA L + L L L +++D G + +L+ L + +TD AG+
Sbjct: 361 VSD--LAPLAAYRDLQRLFLDSTQVSDLGP--VAGMNSLQELYVSHTSVTDLGPLAGLTE 416
Query: 416 IKDLS 420
+K LS
Sbjct: 417 LKRLS 421
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 142/300 (47%), Gaps = 50/300 (16%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L +++ + VTD L L S+L+ +F+F G+ L L+ +T+L
Sbjct: 173 ALQQLNICSTKVTD--LEPLAGLSSLRQFNFSFT------GVTELDPLAKITTLQQLEFR 224
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+ A AGL L KLDL T + L L GL L+ L + N SD+ PL+
Sbjct: 225 LAPIFDLDALAGLRELQKLDLS-TTEVRD-LEPLSGLGALQKL---YFNHTAVSDLGPLA 279
Query: 178 GLTNLKSLQISCS-KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
GL+ L+ L + C+ +VTD I L GL L L L VT L L+ L +L +L+L+
Sbjct: 280 GLSALRKLDLRCARRVTD--IGPLAGLHALQRLILASTQVTD--LTPLTELRNLQHLDLS 335
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
R ++SD L L LT L SL L S + D L L
Sbjct: 336 RTKVSD--------------------------LSPLTSLTALRSLGLTSTQVSD--LAPL 367
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
+L+ L L TQV S L ++G+ +L+ + +S T ++D L LAGL+ LK L++D
Sbjct: 368 AAYRDLQRLFLDSTQV--SDLGPVAGMNSLQELYVSHTSVTD--LGPLAGLTELKRLSVD 423
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 100/207 (48%), Gaps = 18/207 (8%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
LQ LD + ++ D LE L GL L L F N + AGL L KLDL RC
Sbjct: 239 ELQKLDLS-TTEVRD--LEPLSGLGALQKLYF---NHTAVSDLGPLAGLSALRKLDL-RC 291
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
R + L GL L+ L + +D+ PL+ L NL+ L +S +KV+D ++ L
Sbjct: 292 ARRVTDIGPLAGLHALQRLILASTQV---TDLTPLTELRNLQHLDLSRTKVSD--LSPLT 346
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
L L L L V+ L L+A L L L+ Q+SD G + + SL+ L +
Sbjct: 347 SLTALRSLGLTSTQVSD--LAPLAAYRDLQRLFLDSTQVSDLG--PVAGMNSLQELYVSH 402
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGI 288
+TD L L GLT L+ L++D C +
Sbjct: 403 TSVTD--LGPLAGLTELKRLSVDECAV 427
>gi|22347548|gb|AAM95919.1| internalin A precursor [Listeria monocytogenes]
gi|22347558|gb|AAM95924.1| internalin A precursor [Listeria monocytogenes]
gi|22347560|gb|AAM95925.1| internalin A precursor [Listeria monocytogenes]
Length = 744
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 254
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 255 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 312
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 313 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 370
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 371 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 403
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 34 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 89
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 90 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 142
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 143 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 198
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 199 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 252
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 253 ----NISPLAGLTALT 264
>gi|322790910|gb|EFZ15576.1| hypothetical protein SINV_11426 [Solenopsis invicta]
Length = 526
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 103/319 (32%), Positives = 158/319 (49%), Gaps = 44/319 (13%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLF 231
L G+ NL++L +S C +TD GI A+ + LT LNL C VT L ++ +
Sbjct: 229 LKGVPNLEALNLSGCYNITDIGITNAFCQEYPSLTELNLSLCKQVTDTSLSRIAQ----Y 284
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGD 290
NL +L GC + G L + GL L+ L+L SC + D
Sbjct: 285 LKNLEHLELG--GCCNITNTGLLLIA---------------WGLKKLKRLDLRSCWHVSD 327
Query: 291 EGLVNLTGL--------CNLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDG 339
G+ +L GL L+ L L D Q + LRH+S G T L+SINLSF I+D
Sbjct: 328 IGIAHLAGLNRETADGNLALEHLSLQDCQRLSDEALRHVSLGFTTLKSINLSFCVCITDS 387
Query: 340 SLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNF 395
++ LA +SSL+ LNL + I+D G+A L + +T LD+ F +I D ++ +
Sbjct: 388 GVKHLARMSSLRELNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQGL 447
Query: 396 KNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVS 453
NL+SL + ++D G+ K K L L LN+ Q LTD+ L ++ + L +++
Sbjct: 448 FNLKSLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDRGLHTVAESMKNLKCIDLY 507
Query: 454 N-SRITSAGLRHLKPLKNL 471
++IT++GL + L L
Sbjct: 508 GCTKITTSGLERIMKLPQL 526
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 144/294 (48%), Gaps = 51/294 (17%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
V D + IA +L ++L G ++T++GL+ + L+ LD C +SD G+ H
Sbjct: 273 VTDTSLSRIAQYLKNLEHLELGGCCNITNTGLLLIAWGLKKLKRLDLRSCWHVSDIGIAH 332
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLES 159
L GL N TA G A L L L+ C R+ L ++ G L+S
Sbjct: 333 LAGL-----------NRETADGNLA------LEHLSLQDCQRLSDEALRHVSLGFTTLKS 375
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVT 217
+N+ +C CITDS +K L+ +++L+ L + SC ++D G+AYL +G ++T L++ C
Sbjct: 376 INLSFCVCITDSGVKHLARMSSLRELNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKI 435
Query: 218 A--ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
A + L +L L+L+ CQ+SD+G K +K L
Sbjct: 436 GDQALVHISQGLFNLKSLSLSACQISDEGICKIAKT-----------------------L 472
Query: 276 TNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNL 326
+LE+LN+ C + D GL + + NLKC++L T++ +SGL + L L
Sbjct: 473 HDLETLNIGQCSRLTDRGLHTVAESMKNLKCIDLYGCTKITTSGLERIMKLPQL 526
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 146/294 (49%), Gaps = 62/294 (21%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQIS-CSKVTDSGIA--- 198
LKG+ LE+LN+ C ITD G+TN L L +S C +VTD+ ++
Sbjct: 229 LKGVPNLEALNLSGCYNITD------IGITNAFCQEYPSLTELNLSLCKQVTDTSLSRIA 282
Query: 199 -YLK-----------------------GLQKLTLLNLEGCPVTA-------ACLDSLSAL 227
YLK GL+KL L+L C + A L+ +A
Sbjct: 283 QYLKNLEHLELGGCCNITNTGLLLIAWGLKKLKRLDLRSCWHVSDIGIAHLAGLNRETAD 342
Query: 228 G--SLFYLNLNRCQ-LSDDGCEKFS-KIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLN 282
G +L +L+L CQ LSD+ S +LK +NL F ITD + HL +++L LN
Sbjct: 343 GNLALEHLSLQDCQRLSDEALRHVSLGFTTLKSINLSFCVCITDSGVKHLARMSSLRELN 402
Query: 283 LDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISD 338
L SC I D G+ L G + L++S ++G L H+S GL NL+S++LS ISD
Sbjct: 403 LRSCDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQISD 462
Query: 339 GSLRKLAG-LSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSG 388
+ K+A L L++LN+ ++TD GL + S+ L +DL+G +IT SG
Sbjct: 463 EGICKIAKTLHDLETLNIGQCSRLTDRGLHTVAESMKNLKCIDLYGCTKITTSG 516
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 127/248 (51%), Gaps = 38/248 (15%)
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVN--------LTGLCNLKCLELSDTQVGSSGLRHLSG 322
LKG+ NLE+LNL C I D G+ N LT L C +++DT + S ++L
Sbjct: 229 LKGVPNLEALNLSGCYNITDIGITNAFCQEYPSLTELNLSLCKQVTDTSL-SRIAQYLKN 287
Query: 323 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 372
L +LE N++ TG+ L GL LK L+L + ++D G+A L L
Sbjct: 288 LEHLELGGCCNITNTGL----LLIAWGLKKLKRLDLRSCWHVSDIGIAHLAGLNRETADG 343
Query: 373 --GLTHLDLFG-ARITDSGAAYLR-NFKNLRSLE----ICGGGLTDAGVKHIKDLSSLTL 424
L HL L R++D ++ F L+S+ +C +TD+GVKH+ +SSL
Sbjct: 344 NLALEHLSLQDCQRLSDEALRHVSLGFTTLKSINLSFCVC---ITDSGVKHLARMSSLRE 400
Query: 425 LNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKV 481
LNL N++D + L G + + SL+VS +I L H+ + L NL+SL+L +C++
Sbjct: 401 LNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQI 460
Query: 482 TANDIKRL 489
+ I ++
Sbjct: 461 SDEGICKI 468
>gi|313485054|gb|ADR53001.1| InlA [Listeria monocytogenes]
Length = 771
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|298360648|gb|ADI77903.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|284800720|ref|YP_003412585.1| Internalin A [Listeria monocytogenes 08-5578]
gi|284993906|ref|YP_003415674.1| Internalin A [Listeria monocytogenes 08-5923]
gi|130774827|gb|ABO32426.1| InlA [Listeria monocytogenes]
gi|167862038|gb|ACA05718.1| InlA [Listeria monocytogenes]
gi|194326145|emb|CAQ77231.1| internalin A [Listeria monocytogenes]
gi|194326165|emb|CAQ77241.1| internalin A [Listeria monocytogenes]
gi|284056282|gb|ADB67223.1| Internalin A [Listeria monocytogenes 08-5578]
gi|284059373|gb|ADB70312.1| Internalin A [Listeria monocytogenes 08-5923]
gi|298359730|gb|ADI77444.1| internalin A [Listeria monocytogenes]
gi|298359786|gb|ADI77472.1| internalin A [Listeria monocytogenes]
gi|298359904|gb|ADI77531.1| internalin A [Listeria monocytogenes]
gi|298359978|gb|ADI77568.1| internalin A [Listeria monocytogenes]
gi|298360068|gb|ADI77613.1| internalin A [Listeria monocytogenes]
gi|298360228|gb|ADI77693.1| internalin A [Listeria monocytogenes]
gi|298360452|gb|ADI77805.1| internalin A [Listeria monocytogenes]
gi|298360556|gb|ADI77857.1| internalin A [Listeria monocytogenes]
gi|298360576|gb|ADI77867.1| internalin A [Listeria monocytogenes]
gi|298360600|gb|ADI77879.1| internalin A [Listeria monocytogenes]
gi|298360678|gb|ADI77918.1| internalin A [Listeria monocytogenes]
gi|443428872|gb|AGC92235.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|223698883|gb|ACN19162.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 341
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 342 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 374
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 5 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 61 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 113
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|219821261|gb|ACL37752.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 368
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 87
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|158299381|ref|XP_319486.4| AGAP010289-PA [Anopheles gambiae str. PEST]
gi|157014337|gb|EAA14603.5| AGAP010289-PA [Anopheles gambiae str. PEST]
Length = 381
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 125/244 (51%), Gaps = 26/244 (10%)
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIG----------SLKVLNLGF-NEITDECLVH 271
S + GSL + R Q+ GC + + +LKVLNL ++TD L
Sbjct: 124 SPTLFGSLVKRGIKRVQV---GCYNITDMAIGHAFAADFPNLKVLNLSLCKQVTDSSLGR 180
Query: 272 L-KGLTNLESLNLDSCG-IGDEGLVNLT--GLCNLKCLELSDTQ-VGSSGLRHLS-GLTN 325
+ + L N+E L L C I + GL T G L+ L L D Q + LRH++ GLT+
Sbjct: 181 ITQHLKNIEVLELGGCSNITNTGLSKETADGTPALEYLGLQDCQRLSDEALRHIAQGLTS 240
Query: 326 LESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLDL-FG 381
L SINLSF ++D L+ LA +S L+ LNL A I+D G+A LT ++ LD+ F
Sbjct: 241 LRSINLSFCVSVTDSGLKHLARMSRLEELNLRACDNISDIGMAYLTEGCNSISTLDVSFC 300
Query: 382 ARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE 439
++ D ++ + LRSL + +TD G+ I K L L LN+ Q +TD+ LE
Sbjct: 301 DKVADQAMVHISQGLFQLRSLSLSACQITDEGLSRIAKSLHDLETLNIGQCSRITDRGLE 360
Query: 440 LISG 443
+++
Sbjct: 361 IVAA 364
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 126/248 (50%), Gaps = 32/248 (12%)
Query: 62 VDLSGSDVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLR--------GLSN 107
V + ++TD + H D NL+ L+ + C Q++D L +HL+ G SN
Sbjct: 139 VQVGCYNITDMAIGHAFAADFPNLKVLNLSLCKQVTDSSLGRITQHLKNIEVLELGGCSN 198
Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN--LKGLMKLESLNIKWC 165
+T+ + TA G A L L L+ C R+ + +GL L S+N+ +C
Sbjct: 199 ITNTGLSKE---TADGTPA------LEYLGLQDCQRLSDEALRHIAQGLTSLRSINLSFC 249
Query: 166 NCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTA--ACL 221
+TDS +K L+ ++ L+ L + +C ++D G+AYL +G ++ L++ C A A +
Sbjct: 250 VSVTDSGLKHLARMSRLEELNLRACDNISDIGMAYLTEGCNSISTLDVSFCDKVADQAMV 309
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLGF-NEITDECL-VHLKGLTNL 278
L L L+L+ CQ++D+G + +K + L+ LN+G + ITD L + L NL
Sbjct: 310 HISQGLFQLRSLSLSACQITDEGLSRIAKSLHDLETLNIGQCSRITDRGLEIVAAELINL 369
Query: 279 ESLNLDSC 286
+++L C
Sbjct: 370 RAIDLYGC 377
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 126/241 (52%), Gaps = 37/241 (15%)
Query: 179 LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALG--SLFYL 233
NLK L +S C +VTDS + + + L+ + +L L GC +T L +A G +L YL
Sbjct: 159 FPNLKVLNLSLCKQVTDSSLGRITQHLKNIEVLELGGCSNITNTGLSKETADGTPALEYL 218
Query: 234 NLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIG 289
L CQ LSD+ ++ + SL+ +NL F +TD L HL ++ LE LNL +C I
Sbjct: 219 GLQDCQRLSDEALRHIAQGLTSLRSINLSFCVSVTDSGLKHLARMSRLEELNLRACDNIS 278
Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA-GL 347
D G+ LT CN ++ ++++SF ++D ++ ++ GL
Sbjct: 279 DIGMAYLTEGCN-----------------------SISTLDVSFCDKVADQAMVHISQGL 315
Query: 348 SSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEIC 404
L+SL+L A QITD GL+ + SL L L++ +RITD G + NLR++++
Sbjct: 316 FQLRSLSLSACQITDEGLSRIAKSLHDLETLNIGQCSRITDRGLEIVAAELINLRAIDLY 375
Query: 405 G 405
G
Sbjct: 376 G 376
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 103/199 (51%), Gaps = 18/199 (9%)
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDA-RQI 360
C ++D +G + + NL+ +NLS ++D SL ++ L +++ L L I
Sbjct: 143 CYNITDMAIGHA---FAADFPNLKVLNLSLCKQVTDSSLGRITQHLKNIEVLELGGCSNI 199
Query: 361 TDTGLAALTSLTGLTHLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGV 413
T+TGL+ T+ G L+ G R++D ++ + +LRS L C +TD+G+
Sbjct: 200 TNTGLSKETA-DGTPALEYLGLQDCQRLSDEALRHIAQGLTSLRSINLSFCVS-VTDSGL 257
Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKN 470
KH+ +S L LNL N++D + L G + +L+VS ++ + H+ + L
Sbjct: 258 KHLARMSRLEELNLRACDNISDIGMAYLTEGCNSISTLDVSFCDKVADQAMVHISQGLFQ 317
Query: 471 LRSLTLESCKVTANDIKRL 489
LRSL+L +C++T + R+
Sbjct: 318 LRSLSLSACQITDEGLSRI 336
Score = 42.0 bits (97), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHL-KDCSNLQSLDFNF 90
L++L L ++D M + +S+ ++D+S D V D ++H+ + L+SL +
Sbjct: 266 LEELNLRACDNISDIGMAYLTEGCNSISTLDVSFCDKVADQAMVHISQGLFQLRSLSLSA 325
Query: 91 CIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDLERCTRI 144
C QI+D GL + + L +L +L+ + + IT +G++ A LINL +DL CTR+
Sbjct: 326 C-QITDEGLSRIAKSLHDLETLNIGQCSRITDRGLEIVAAELINLRAIDLYGCTRL 380
>gi|112961694|gb|ABI28482.1| internalin A [Listeria monocytogenes]
gi|112961706|gb|ABI28490.1| internalin A [Listeria monocytogenes]
gi|112961763|gb|ABI28528.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 261
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 262 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 319
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 320 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 377
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 378 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 41 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 96
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 97 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 149
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 150 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 205
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 206 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 259
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 260 ----NISPLAGLTALT 271
>gi|22347562|gb|AAM95926.1| internalin A precursor [Listeria monocytogenes]
Length = 744
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 254
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 255 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 312
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 313 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 370
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 371 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 403
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 34 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 89
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 90 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 142
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 143 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 198
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 199 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 252
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 253 ----NISPLAGLTALT 264
>gi|219821273|gb|ACL37760.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDIVMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT ++ L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRISELGLNDQEWTNPPVNYKV 368
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDIVMNNNQIAD--ITPLANLSNLT 87
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|226223065|ref|YP_002757172.1| Internalin A [Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|386731210|ref|YP_006204706.1| internalin A [Listeria monocytogenes 07PF0776]
gi|406703224|ref|YP_006753578.1| internalin A (LPXTG motif) [Listeria monocytogenes L312]
gi|167861892|gb|ACA05645.1| InlA [Listeria monocytogenes]
gi|167861914|gb|ACA05656.1| InlA [Listeria monocytogenes]
gi|167861978|gb|ACA05688.1| InlA [Listeria monocytogenes]
gi|194239396|emb|CAQ76838.1| internalin A [Listeria monocytogenes]
gi|225875527|emb|CAS04230.1| Internalin A [Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|298359780|gb|ADI77469.1| internalin A [Listeria monocytogenes]
gi|384389968|gb|AFH79038.1| internalin A [Listeria monocytogenes 07PF0776]
gi|406360254|emb|CBY66527.1| internalin A (LPXTG motif) [Listeria monocytogenes L312]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|22347566|gb|AAM95928.1| internalin A precursor [Listeria monocytogenes]
Length = 746
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 254
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 255 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 312
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 313 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKT 370
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 371 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 403
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 36 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 88
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 89 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 143
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 144 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 201
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 202 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 252
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 253 -NISPLAGLTALT 264
>gi|326436437|gb|EGD82007.1| hypothetical protein PTSG_11905 [Salpingoeca sp. ATCC 50818]
Length = 1127
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 112/467 (23%), Positives = 210/467 (44%), Gaps = 29/467 (6%)
Query: 23 VSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSN 82
V L FR + ++ + Y GV ++ + + +++ ++DL+G+D+T L+ +N
Sbjct: 262 VWLLQFRWDTVTNITIRGYEGV--EFPLAVLNAMTNVHTIDLAGNDIT--RLV----PTN 313
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL--DLER 140
+ NF + S +T+L RN +++ A + NL L D +
Sbjct: 314 AAVDNKNFTLGDS------------ITTLDVTRN-SLSELPQATLAAMPNLTHLTWDGNQ 360
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
I G+ L +L+++ N I + + L +L+ L +S ++++ +
Sbjct: 361 LAEIEPGV--FAATTNLTTLSLR-DNRILNVVAGTFAHLNSLRDLDLSDNRISSVAVDAF 417
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
GL + +L+L +++ + + L SL L+L+ ++S F+ + SL L+LG
Sbjct: 418 AGLFSVVVLHLNDNRISSVVAHTFADLVSLRELDLSNNRISSIAAFAFAGLTSLVELHLG 477
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
N + + L++L L+L + I + + L +L L LS+ ++ S
Sbjct: 478 NNTVFEVVADAFADLSSLPKLDLSNNRISNVSALAFADLTSLTELRLSNNRISSIVENAF 537
Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
SGLT+L ++++ F IS L L+SLNLD + +LT L+HL L
Sbjct: 538 SGLTSLMTLDVHFNRISTLDENALISTFKLESLNLDHNPVDTFPPRLFVNLTRLSHLRLT 597
Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
R T + + LR L + T+ V L+ L L L+ N ++T L
Sbjct: 598 STRATTLPTSLFEHNTRLRELWLFHNRFTEIEVGTFDKLTRLVFLTLTGN-DITHLPSML 656
Query: 441 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 487
+ LT L L +SN+ + + + L++L +LTL ++ ND+
Sbjct: 657 FARLTRLKELYISNNDVRTVDPNAFRGLESLTTLTLVRNRI--NDLH 701
Score = 41.6 bits (96), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 115/258 (44%), Gaps = 13/258 (5%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLS--NLTSLSFR 114
+SL+ + L + V + D S+L LD +S+ + ++ L+ +LTSL+
Sbjct: 469 TSLVELHLGNNTVFEVVADAFADLSSLPKLD------LSNNRISNVSALAFADLTSLTEL 522
Query: 115 R--NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-LKGLMKLESLNIKWCNCITDS 171
R NN I++ AF+GL +L+ LD+ RI N L KLESLN+ N +
Sbjct: 523 RLSNNRISSIVENAFSGLTSLMTLDVH-FNRISTLDENALISTFKLESLNLD-HNPVDTF 580
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
+ LT L L+++ ++ T + + +L L L T + + L L
Sbjct: 581 PPRLFVNLTRLSHLRLTSTRATTLPTSLFEHNTRLRELWLFHNRFTEIEVGTFDKLTRLV 640
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
+L L ++ F+++ LK L + N++ +GL +L +L L I D
Sbjct: 641 FLTLTGNDITHLPSMLFARLTRLKELYISNNDVRTVDPNAFRGLESLTTLTLVRNRINDL 700
Query: 292 GLVNLTGLCNLKCLELSD 309
T L+ ++LSD
Sbjct: 701 HADTFTTATALENVDLSD 718
>gi|130774755|gb|ABO32392.1| InlA [Listeria monocytogenes]
gi|130774767|gb|ABO32398.1| InlA [Listeria monocytogenes]
gi|298359732|gb|ADI77445.1| internalin A [Listeria monocytogenes]
gi|298360004|gb|ADI77581.1| internalin A [Listeria monocytogenes]
gi|298360478|gb|ADI77818.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|313485058|gb|ADR53003.1| InlA [Listeria monocytogenes]
Length = 765
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|313485048|gb|ADR52999.1| InlA [Listeria monocytogenes]
gi|313485083|gb|ADR53012.1| InlA [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|112961646|gb|ABI28450.1| internalin A [Listeria monocytogenes]
gi|112961721|gb|ABI28500.1| internalin A [Listeria monocytogenes]
gi|112961757|gb|ABI28524.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 261
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 262 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 319
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 320 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 377
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 378 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 41 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 96
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 97 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 149
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 150 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 205
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 206 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 259
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 260 ----NISPLAGLTALT 271
>gi|313485077|gb|ADR53009.1| InlA [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|298360360|gb|ADI77759.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|294358387|gb|ADE73846.1| InlA [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 185/393 (47%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL+ L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLISLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T + L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQVGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 120/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLISLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 80/177 (45%), Gaps = 50/177 (28%)
Query: 316 GLRHLSG---LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSL 371
G++ + G L NL IN S ++D + L L+ L + ++ QI D T LA LT+L
Sbjct: 87 GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIADITPLANLTNL 144
Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
TGLT LF +ITD L+N NL LE+ ++D
Sbjct: 145 TGLT---LFNNQITDIDP--LKNLTNLNRLELSSNTISD--------------------- 178
Query: 432 NLTDKTLELISGLTGLVSLNVSNSRITSAG--LRHLKPLKNLRSLTLESCKVTANDI 486
IS L+GL+SL + S G + LKPL NL TLE +++N +
Sbjct: 179 ---------ISALSGLISL-----QQLSFGNQVTDLKPLANLT--TLERLDISSNKV 219
>gi|223698613|gb|ACN18982.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 185/393 (47%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL+ L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLISLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T + L T++ Y
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQVGLNDQAWTNAPVNYKA 341
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 342 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 120/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 7 DGVEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNL 59
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL SL+ L+ Q+TD
Sbjct: 60 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLISLQQLSF-GNQVTD 114
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 223
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 224 -NISPLAGLTALT 235
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 81/180 (45%), Gaps = 50/180 (27%)
Query: 316 GLRHLSG---LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSL 371
G++ + G L NL IN S ++D + L L+ L + ++ QI D T LA LT+L
Sbjct: 2 GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIADITPLANLTNL 59
Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
TGLT LF +ITD L+N NL LE+ ++D
Sbjct: 60 TGLT---LFNNQITDIDP--LKNLTNLNRLELSSNTISD--------------------- 93
Query: 432 NLTDKTLELISGLTGLVSLNVSNSRITSAG--LRHLKPLKNLRSLTLESCKVTANDIKRL 489
IS L+GL+SL + S G + LKPL NL TLE +++N + +
Sbjct: 94 ---------ISALSGLISL-----QQLSFGNQVTDLKPLANLT--TLERLDISSNKVSDI 137
>gi|254854324|ref|ZP_05243672.1| internalin A [Listeria monocytogenes FSL R2-503]
gi|300766414|ref|ZP_07076370.1| internalin A precursor [Listeria monocytogenes FSL N1-017]
gi|404279991|ref|YP_006680889.1| internalin A [Listeria monocytogenes SLCC2755]
gi|404285805|ref|YP_006692391.1| internalin A [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|405754532|ref|YP_006677996.1| internalin A [Listeria monocytogenes SLCC2540]
gi|130774761|gb|ABO32395.1| InlA [Listeria monocytogenes]
gi|130774765|gb|ABO32397.1| InlA [Listeria monocytogenes]
gi|130774775|gb|ABO32402.1| InlA [Listeria monocytogenes]
gi|150371872|dbj|BAF65725.1| internalin A [Listeria monocytogenes]
gi|150371878|dbj|BAF65728.1| internalin A [Listeria monocytogenes]
gi|150371880|dbj|BAF65729.1| internalin A [Listeria monocytogenes]
gi|150371882|dbj|BAF65730.1| internalin A [Listeria monocytogenes]
gi|150371884|dbj|BAF65731.1| internalin A [Listeria monocytogenes]
gi|150371886|dbj|BAF65732.1| internalin A [Listeria monocytogenes]
gi|167861936|gb|ACA05667.1| InlA [Listeria monocytogenes]
gi|167861950|gb|ACA05674.1| InlA [Listeria monocytogenes]
gi|167861974|gb|ACA05686.1| InlA [Listeria monocytogenes]
gi|167861990|gb|ACA05694.1| InlA [Listeria monocytogenes]
gi|194239386|emb|CAQ76833.1| internalin A [Listeria monocytogenes]
gi|194239390|emb|CAQ76835.1| internalin A [Listeria monocytogenes]
gi|194239398|emb|CAQ76839.1| internalin A [Listeria monocytogenes]
gi|194326159|emb|CAQ77238.1| internalin A [Listeria monocytogenes]
gi|223006782|gb|ACM69348.1| internalin A [Listeria monocytogenes]
gi|258607720|gb|EEW20328.1| internalin A [Listeria monocytogenes FSL R2-503]
gi|290350822|dbj|BAI78332.1| internalin A [Listeria monocytogenes]
gi|290350824|dbj|BAI78333.1| internalin A [Listeria monocytogenes]
gi|298359734|gb|ADI77446.1| internalin A [Listeria monocytogenes]
gi|298359740|gb|ADI77449.1| internalin A [Listeria monocytogenes]
gi|298359774|gb|ADI77466.1| internalin A [Listeria monocytogenes]
gi|298359822|gb|ADI77490.1| internalin A [Listeria monocytogenes]
gi|298359826|gb|ADI77492.1| internalin A [Listeria monocytogenes]
gi|298359830|gb|ADI77494.1| internalin A [Listeria monocytogenes]
gi|298359834|gb|ADI77496.1| internalin A [Listeria monocytogenes]
gi|298359836|gb|ADI77497.1| internalin A [Listeria monocytogenes]
gi|298359846|gb|ADI77502.1| internalin A [Listeria monocytogenes]
gi|298359848|gb|ADI77503.1| internalin A [Listeria monocytogenes]
gi|298359854|gb|ADI77506.1| internalin A [Listeria monocytogenes]
gi|298359856|gb|ADI77507.1| internalin A [Listeria monocytogenes]
gi|298359868|gb|ADI77513.1| internalin A [Listeria monocytogenes]
gi|298359870|gb|ADI77514.1| internalin A [Listeria monocytogenes]
gi|298359888|gb|ADI77523.1| internalin A [Listeria monocytogenes]
gi|298359920|gb|ADI77539.1| internalin A [Listeria monocytogenes]
gi|298359954|gb|ADI77556.1| internalin A [Listeria monocytogenes]
gi|298359968|gb|ADI77563.1| internalin A [Listeria monocytogenes]
gi|298359972|gb|ADI77565.1| internalin A [Listeria monocytogenes]
gi|298359984|gb|ADI77571.1| internalin A [Listeria monocytogenes]
gi|298359998|gb|ADI77578.1| internalin A [Listeria monocytogenes]
gi|298360002|gb|ADI77580.1| internalin A [Listeria monocytogenes]
gi|298360006|gb|ADI77582.1| internalin A [Listeria monocytogenes]
gi|298360040|gb|ADI77599.1| internalin A [Listeria monocytogenes]
gi|298360042|gb|ADI77600.1| internalin A [Listeria monocytogenes]
gi|298360044|gb|ADI77601.1| internalin A [Listeria monocytogenes]
gi|298360050|gb|ADI77604.1| internalin A [Listeria monocytogenes]
gi|298360080|gb|ADI77619.1| internalin A [Listeria monocytogenes]
gi|298360090|gb|ADI77624.1| internalin A [Listeria monocytogenes]
gi|298360100|gb|ADI77629.1| internalin A [Listeria monocytogenes]
gi|298360126|gb|ADI77642.1| internalin A [Listeria monocytogenes]
gi|298360150|gb|ADI77654.1| internalin A [Listeria monocytogenes]
gi|298360156|gb|ADI77657.1| internalin A [Listeria monocytogenes]
gi|298360166|gb|ADI77662.1| internalin A [Listeria monocytogenes]
gi|298360188|gb|ADI77673.1| internalin A [Listeria monocytogenes]
gi|298360190|gb|ADI77674.1| internalin A [Listeria monocytogenes]
gi|298360194|gb|ADI77676.1| internalin A [Listeria monocytogenes]
gi|298360220|gb|ADI77689.1| internalin A [Listeria monocytogenes]
gi|298360222|gb|ADI77690.1| internalin A [Listeria monocytogenes]
gi|298360238|gb|ADI77698.1| internalin A [Listeria monocytogenes]
gi|298360246|gb|ADI77702.1| internalin A [Listeria monocytogenes]
gi|298360260|gb|ADI77709.1| internalin A [Listeria monocytogenes]
gi|298360264|gb|ADI77711.1| internalin A [Listeria monocytogenes]
gi|298360266|gb|ADI77712.1| internalin A [Listeria monocytogenes]
gi|298360294|gb|ADI77726.1| internalin A [Listeria monocytogenes]
gi|298360298|gb|ADI77728.1| internalin A [Listeria monocytogenes]
gi|298360312|gb|ADI77735.1| internalin A [Listeria monocytogenes]
gi|298360318|gb|ADI77738.1| internalin A [Listeria monocytogenes]
gi|298360356|gb|ADI77757.1| internalin A [Listeria monocytogenes]
gi|298360368|gb|ADI77763.1| internalin A [Listeria monocytogenes]
gi|298360396|gb|ADI77777.1| internalin A [Listeria monocytogenes]
gi|298360398|gb|ADI77778.1| internalin A [Listeria monocytogenes]
gi|298360400|gb|ADI77779.1| internalin A [Listeria monocytogenes]
gi|298360428|gb|ADI77793.1| internalin A [Listeria monocytogenes]
gi|298360434|gb|ADI77796.1| internalin A [Listeria monocytogenes]
gi|298360448|gb|ADI77803.1| internalin A [Listeria monocytogenes]
gi|298360462|gb|ADI77810.1| internalin A [Listeria monocytogenes]
gi|298360498|gb|ADI77828.1| internalin A [Listeria monocytogenes]
gi|298360502|gb|ADI77830.1| internalin A [Listeria monocytogenes]
gi|298360510|gb|ADI77834.1| internalin A [Listeria monocytogenes]
gi|298360514|gb|ADI77836.1| internalin A [Listeria monocytogenes]
gi|298360558|gb|ADI77858.1| internalin A [Listeria monocytogenes]
gi|298360560|gb|ADI77859.1| internalin A [Listeria monocytogenes]
gi|298360566|gb|ADI77862.1| internalin A [Listeria monocytogenes]
gi|298360586|gb|ADI77872.1| internalin A [Listeria monocytogenes]
gi|298360614|gb|ADI77886.1| internalin A [Listeria monocytogenes]
gi|298360630|gb|ADI77894.1| internalin A [Listeria monocytogenes]
gi|298360638|gb|ADI77898.1| internalin A [Listeria monocytogenes]
gi|298360652|gb|ADI77905.1| internalin A [Listeria monocytogenes]
gi|298360680|gb|ADI77919.1| internalin A [Listeria monocytogenes]
gi|298360682|gb|ADI77920.1| internalin A [Listeria monocytogenes]
gi|298360694|gb|ADI77926.1| internalin A [Listeria monocytogenes]
gi|298360704|gb|ADI77931.1| internalin A [Listeria monocytogenes]
gi|298360706|gb|ADI77932.1| internalin A [Listeria monocytogenes]
gi|300512880|gb|EFK39971.1| internalin A precursor [Listeria monocytogenes FSL N1-017]
gi|302034315|gb|ADK92311.1| internalin A [Listeria monocytogenes]
gi|302034317|gb|ADK92312.1| internalin A [Listeria monocytogenes]
gi|404223732|emb|CBY75094.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC2540]
gi|404226626|emb|CBY48031.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC2755]
gi|404244734|emb|CBY02959.1| internalin A (LPXTG motif) [Listeria monocytogenes serotype 7 str.
SLCC2482]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|112959508|gb|ABI27281.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 247
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 248 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 305
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 306 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 363
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 364 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 27 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 83 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 135
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 136 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 191
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 192 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 245
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 246 ----NISPLAGLTALT 257
>gi|294358389|gb|ADE73847.1| InlA [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|219821366|gb|ACL37822.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 368
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 87
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 140
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|112959438|gb|ABI27246.1| internalin A [Listeria monocytogenes]
gi|112959450|gb|ABI27252.1| internalin A [Listeria monocytogenes]
gi|112959456|gb|ABI27255.1| internalin A [Listeria monocytogenes]
gi|112959496|gb|ABI27275.1| internalin A [Listeria monocytogenes]
gi|112959498|gb|ABI27276.1| internalin A [Listeria monocytogenes]
gi|112959526|gb|ABI27290.1| internalin A [Listeria monocytogenes]
gi|112959528|gb|ABI27291.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 247
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 248 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 305
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 306 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 363
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 364 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 27 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 83 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 135
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 136 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 191
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 192 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 245
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 246 ----NISPLAGLTALT 257
>gi|254825753|ref|ZP_05230754.1| internalin A [Listeria monocytogenes FSL J1-194]
gi|255521302|ref|ZP_05388539.1| internalin A [Listeria monocytogenes FSL J1-175]
gi|130774771|gb|ABO32400.1| InlA [Listeria monocytogenes]
gi|130774777|gb|ABO32403.1| InlA [Listeria monocytogenes]
gi|130774779|gb|ABO32404.1| InlA [Listeria monocytogenes]
gi|150371874|dbj|BAF65726.1| internalin A [Listeria monocytogenes]
gi|150371876|dbj|BAF65727.1| internalin A [Listeria monocytogenes]
gi|223006790|gb|ACM69352.1| internalin A [Listeria monocytogenes]
gi|290350838|dbj|BAI78340.1| internalin A [Listeria monocytogenes]
gi|293594997|gb|EFG02758.1| internalin A [Listeria monocytogenes FSL J1-194]
gi|298359742|gb|ADI77450.1| internalin A [Listeria monocytogenes]
gi|298359744|gb|ADI77451.1| internalin A [Listeria monocytogenes]
gi|298359756|gb|ADI77457.1| internalin A [Listeria monocytogenes]
gi|298359790|gb|ADI77474.1| internalin A [Listeria monocytogenes]
gi|298359872|gb|ADI77515.1| internalin A [Listeria monocytogenes]
gi|298359880|gb|ADI77519.1| internalin A [Listeria monocytogenes]
gi|298359942|gb|ADI77550.1| internalin A [Listeria monocytogenes]
gi|298359946|gb|ADI77552.1| internalin A [Listeria monocytogenes]
gi|298360032|gb|ADI77595.1| internalin A [Listeria monocytogenes]
gi|298360064|gb|ADI77611.1| internalin A [Listeria monocytogenes]
gi|298360114|gb|ADI77636.1| internalin A [Listeria monocytogenes]
gi|298360202|gb|ADI77680.1| internalin A [Listeria monocytogenes]
gi|298360282|gb|ADI77720.1| internalin A [Listeria monocytogenes]
gi|298360284|gb|ADI77721.1| internalin A [Listeria monocytogenes]
gi|298360314|gb|ADI77736.1| internalin A [Listeria monocytogenes]
gi|298360330|gb|ADI77744.1| internalin A [Listeria monocytogenes]
gi|298360346|gb|ADI77752.1| internalin A [Listeria monocytogenes]
gi|298360410|gb|ADI77784.1| internalin A [Listeria monocytogenes]
gi|298360420|gb|ADI77789.1| internalin A [Listeria monocytogenes]
gi|298360440|gb|ADI77799.1| internalin A [Listeria monocytogenes]
gi|298360454|gb|ADI77806.1| internalin A [Listeria monocytogenes]
gi|298360470|gb|ADI77814.1| internalin A [Listeria monocytogenes]
gi|298360494|gb|ADI77826.1| internalin A [Listeria monocytogenes]
gi|298360506|gb|ADI77832.1| internalin A [Listeria monocytogenes]
gi|298360604|gb|ADI77881.1| internalin A [Listeria monocytogenes]
gi|298360610|gb|ADI77884.1| internalin A [Listeria monocytogenes]
gi|298360612|gb|ADI77885.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|130774769|gb|ABO32399.1| InlA [Listeria monocytogenes]
gi|130774773|gb|ABO32401.1| InlA [Listeria monocytogenes]
gi|167861932|gb|ACA05665.1| InlA [Listeria monocytogenes]
gi|167861992|gb|ACA05695.1| InlA [Listeria monocytogenes]
gi|167861994|gb|ACA05696.1| InlA [Listeria monocytogenes]
gi|167861998|gb|ACA05698.1| InlA [Listeria monocytogenes]
gi|167862004|gb|ACA05701.1| InlA [Listeria monocytogenes]
gi|167862034|gb|ACA05716.1| InlA [Listeria monocytogenes]
gi|194326169|emb|CAQ77243.1| internalin A [Listeria monocytogenes]
gi|298359894|gb|ADI77526.1| internalin A [Listeria monocytogenes]
gi|298360034|gb|ADI77596.1| internalin A [Listeria monocytogenes]
gi|298360110|gb|ADI77634.1| internalin A [Listeria monocytogenes]
gi|298360112|gb|ADI77635.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|112961616|gb|ABI28430.1| internalin A [Listeria monocytogenes]
gi|112961649|gb|ABI28452.1| internalin A [Listeria monocytogenes]
gi|112961652|gb|ABI28454.1| internalin A [Listeria monocytogenes]
gi|112961664|gb|ABI28462.1| internalin A [Listeria monocytogenes]
gi|112961691|gb|ABI28480.1| internalin A [Listeria monocytogenes]
gi|112961718|gb|ABI28498.1| internalin A [Listeria monocytogenes]
gi|112961727|gb|ABI28504.1| internalin A [Listeria monocytogenes]
gi|112961748|gb|ABI28518.1| internalin A [Listeria monocytogenes]
gi|112961751|gb|ABI28520.1| internalin A [Listeria monocytogenes]
gi|112961769|gb|ABI28532.1| internalin A [Listeria monocytogenes]
gi|112961775|gb|ABI28536.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 261
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 262 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 319
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 320 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 377
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 378 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 41 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 96
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 97 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 149
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 150 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 205
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 206 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 259
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 260 ----NISPLAGLTALT 271
>gi|223698625|gb|ACN18990.1| internalin A [Listeria monocytogenes]
gi|223698736|gb|ACN19064.1| internalin A [Listeria monocytogenes]
gi|223698739|gb|ACN19066.1| internalin A [Listeria monocytogenes]
gi|223698847|gb|ACN19138.1| internalin A [Listeria monocytogenes]
gi|223698904|gb|ACN19176.1| internalin A [Listeria monocytogenes]
gi|223698955|gb|ACN19210.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 341
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 342 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 5 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 61 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 113
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|219821276|gb|ACL37762.1| internalin A [Listeria monocytogenes]
gi|219821336|gb|ACL37802.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 368
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 87
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 140
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|112961679|gb|ABI28472.1| internalin A [Listeria monocytogenes]
gi|112961682|gb|ABI28474.1| internalin A [Listeria monocytogenes]
gi|112961685|gb|ABI28476.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 261
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 262 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 319
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 320 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 377
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 378 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 41 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 96
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 97 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 149
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 150 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 205
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 206 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 259
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 260 ----NISPLAGLTALT 271
>gi|112959468|gb|ABI27261.1| internalin A [Listeria monocytogenes]
Length = 730
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 28 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 81
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 82 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 133
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 134 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 186
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 187 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 240
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 241 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 298
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 299 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 356
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 357 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 389
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 20 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 75
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 76 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 128
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 129 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 184
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 185 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 238
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 239 ----NISPLAGLTALT 250
>gi|112961619|gb|ABI28432.1| internalin A [Listeria monocytogenes]
gi|112961637|gb|ABI28444.1| internalin A [Listeria monocytogenes]
gi|112961655|gb|ABI28456.1| internalin A [Listeria monocytogenes]
gi|112961658|gb|ABI28458.1| internalin A [Listeria monocytogenes]
gi|112961766|gb|ABI28530.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 261
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 262 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 319
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 320 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 377
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 378 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 41 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 96
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 97 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 149
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 150 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 205
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 206 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 259
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 260 ----NISPLAGLTALT 271
>gi|219821279|gb|ACL37764.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKV 368
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 34 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 86
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 87 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 141
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 142 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 199
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 200 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 250
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 251 -NISPLAGLTALT 262
>gi|71668063|ref|XP_820975.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70886340|gb|EAN99124.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 930
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/483 (24%), Positives = 203/483 (42%), Gaps = 85/483 (17%)
Query: 58 SLLSVDLSGSDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DLS + VT+ G+ + + L L C +I L+ LR L+ L L
Sbjct: 368 ALRDLDLSYTQVTEEGMYRDVSKLNKLSRLSLEGCRKIE--SLQWLRALNQLRVLDLG-Y 424
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG-------------------------GLVNL 151
+++T + A L KLDL+ C RI GLV L
Sbjct: 425 SSVTDDSLTALRFCPELAKLDLQWCGRITSLMCLVGALCDSLRELNLTETSVTDEGLVPL 484
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
K LE ++++ C ++D ++ L LT L+ + + ++VT+ G+ L Q L ++ +
Sbjct: 485 KDFAALEWISLEGCGAVSDVNV--LCNLTRLREVDVGRTRVTNRGVVSLSQCQALRVMRM 542
Query: 212 EGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
C +T A + L AL L ++L+ C ++++G SL+ L L ++ +
Sbjct: 543 RQCYRLTDA--NFLGALQQLEEVDLSDCPVTNEGIAALFGARSLRKLRLQSCHAVND-VN 599
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTG-------------------------LCNLKCL 305
L GL +L L+L + +EG V L L LK L
Sbjct: 600 FLGGLEHLMLLDLHHTTVDEEGSVGLAQCPQLMTLIMHSVLVHSLQQWNAALFLPRLKRL 659
Query: 306 ELSDTQVGSSGLRHLSGLTNLESINL-----------------SFTGISDGSLRKLAGLS 348
+LS T+V S L L LE+++L S TG+ R +
Sbjct: 660 DLSTTKVTSDALSFLRMCPVLETLSLRGCKNITHLDFLILQPSSGTGVCAIVPRDVEPHD 719
Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
++ + + D G + + ++T + I + A + + LR L + G G+
Sbjct: 720 TVGDIIAGKEKNPDDGPSPIETMTTNDGV------IKSTAVAAVVSRHRLRELTLSGTGV 773
Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 468
TD G++ ++ L L L+ N TD + ++ L+ L L++S + +T +GL L P
Sbjct: 774 TDEGLRALQYCPGLERLRLAHCKNFTD--VAVLRWLSQLKELDLSATGVTGSGLAKLSPS 831
Query: 469 KNL 471
NL
Sbjct: 832 GNL 834
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 145/332 (43%), Gaps = 38/332 (11%)
Query: 179 LTNLKSLQISCSKVTDSGIAY-LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L L+ L +S ++VT+ G+ + L KL+ L+LEGC + L L AL L L+L
Sbjct: 366 LCALRDLDLSYTQVTEEGMYRDVSKLNKLSRLSLEGCRKIES-LQWLRALNQLRVLDLGY 424
Query: 238 CQLSDDG------CEKFSKIG-------------------SLKVLNLGFNEITDECLVHL 272
++DD C + +K+ SL+ LNL +TDE LV L
Sbjct: 425 SSVTDDSLTALRFCPELAKLDLQWCGRITSLMCLVGALCDSLRELNLTETSVTDEGLVPL 484
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD---TQVGSSGLRHLSGLTNLESI 329
K LE ++L+ CG + ++ LCNL L D T+V + G+ LS L +
Sbjct: 485 KDFAALEWISLEGCG----AVSDVNVLCNLTRLREVDVGRTRVTNRGVVSLSQCQALRVM 540
Query: 330 NL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
+ ++D + L L L+ ++L +T+ G+AAL L L L +
Sbjct: 541 RMRQCYRLTDANF--LGALQQLEEVDLSDCPVTNEGIAALFGARSLRKLRLQSCHAVND- 597
Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
+L ++L L++ + + G + L L + + + L L
Sbjct: 598 VNFLGGLEHLMLLDLHHTTVDEEGSVGLAQCPQLMTLIMHSVLVHSLQQWNAALFLPRLK 657
Query: 449 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
L++S +++TS L L+ L +L+L CK
Sbjct: 658 RLDLSTTKVTSDALSFLRMCPVLETLSLRGCK 689
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 84/343 (24%), Positives = 139/343 (40%), Gaps = 57/343 (16%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L VD+ + VT+ G++ L C L+ + C +++D L L L + +
Sbjct: 511 TRLREVDVGRTRVTNRGVVSLSQCQALRVMRMRQCYRLTDANF--LGALQQLEEVDLS-D 567
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIH-----GGLVNLK---------------GLMK 156
+T +G+ A G +L KL L+ C ++ GGL +L GL +
Sbjct: 568 CPVTNEGIAALFGARSLRKLRLQSCHAVNDVNFLGGLEHLMLLDLHHTTVDEEGSVGLAQ 627
Query: 157 LESLNIKWCNCITDSDMKPLSG---LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L + + ++ + L LK L +S +KVT +++L+ L L+L G
Sbjct: 628 CPQLMTLIMHSVLVHSLQQWNAALFLPRLKRLDLSTTKVTSDALSFLRMCPVLETLSLRG 687
Query: 214 CPVTAACLDSL-------SALGSLFYLNLNRCQLSDD---GCEKFSKIGSLKVLNLGFNE 263
C LD L + + ++ ++ D G EK G + + N+
Sbjct: 688 C-KNITHLDFLILQPSSGTGVCAIVPRDVEPHDTVGDIIAGKEKNPDDGPSPIETMTTND 746
Query: 264 --ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL---TGLCNLK---CLELSDTQVGSS 315
I + + L L L G+ DEGL L GL L+ C +D V
Sbjct: 747 GVIKSTAVAAVVSRHRLRELTLSGTGVTDEGLRALQYCPGLERLRLAHCKNFTDVAV--- 803
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L L+ L+ ++LS TG++ L KL+ S NL AR
Sbjct: 804 ----LRWLSQLKELDLSATGVTGSGLAKLS-----PSGNLPAR 837
>gi|322952085|gb|ADX21042.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|242083750|ref|XP_002442300.1| hypothetical protein SORBIDRAFT_08g017670 [Sorghum bicolor]
gi|241942993|gb|EES16138.1| hypothetical protein SORBIDRAFT_08g017670 [Sorghum bicolor]
Length = 489
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 126/432 (29%), Positives = 203/432 (46%), Gaps = 61/432 (14%)
Query: 80 CSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
C L+ L +C +ISD G++ L + L SL+ I+ +K+
Sbjct: 10 CPRLEKLSLKWCREISDIGIDLLAKKCPELRSLN------------------ISYLKVG- 50
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSG 196
+G L ++ L +LE L + C+CI D ++ LS G +L+S+ +S C VT G
Sbjct: 51 ------NGSLRSISSLERLEELAMVCCSCIDDEGLELLSKGSDSLQSVDVSRCDHVTSEG 104
Query: 197 IAYL-KGLQKLTLLNLEGC--PVTAACLDSLSALG-SLFYLNLNRCQLSD-------DGC 245
+A L G + L C + L L+ L +L L L+ ++SD + C
Sbjct: 105 LASLIDGRNFVQKLYAADCLHEIGQRFLSKLATLKETLTMLKLDGLEVSDSLLQAIGESC 164
Query: 246 EKFSKIGSLK---VLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN 301
K +IG K V + G + + +C ++L +++L C I + L ++ C
Sbjct: 165 NKLVEIGLSKCSGVTDDGISSLVAQC-------SDLRTIDLTCCNLITNNALDSIADNCK 217
Query: 302 -LKCLEL-SDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-A 357
L+CL L S + + GL+ ++ NL+ I+L+ G+ D +L LA S L+ L L
Sbjct: 218 MLECLRLESCSLINEKGLKRIATCCPNLKEIDLTDCGVDDAALEHLAKCSELRILKLGLC 277
Query: 358 RQITDTGLAALTSLTG-LTHLDLFGAR-ITDSGAAYLRN-FKNLRSLEIC-GGGLTDAGV 413
I+D G+A ++S G L LDL+ ITD G A L N K ++ L +C +TD G+
Sbjct: 278 SSISDKGIAFISSNCGKLVELDLYRCNSITDDGLAALVNGCKRIKLLNLCYCNKITDTGL 337
Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSNSR-ITSAGLRHLKPLK-N 470
H+ L LT L L +T + ++ G L+ L++ + AGL L N
Sbjct: 338 GHLGSLEELTNLELRCLVRITGIGISSVAIGCKSLIELDLKRCYSVDDAGLWALARYALN 397
Query: 471 LRSLTLESCKVT 482
LR LT+ C+VT
Sbjct: 398 LRQLTISYCQVT 409
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 98/203 (48%), Gaps = 28/203 (13%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+N+K + IA+ +L +DL+ V D+ L HL CS L+ L C ISD G+ +
Sbjct: 230 INEKGLKRIATCCPNLKEIDLTDCGVDDAALEHLAKCSELRILKLGLCSSISDKGIAFIS 289
Query: 104 G-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L L R N+IT G+ A LVN G +++ LN+
Sbjct: 290 SNCGKLVELDLYRCNSITDDGLAA---------------------LVN--GCKRIKLLNL 326
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLK-GLQKLTLLNLEGC-PVTAA 219
+CN ITD+ + L L L +L++ C ++T GI+ + G + L L+L+ C V A
Sbjct: 327 CYCNKITDTGLGHLGSLEELTNLELRCLVRITGIGISSVAIGCKSLIELDLKRCYSVDDA 386
Query: 220 CLDSLSALG-SLFYLNLNRCQLS 241
L +L+ +L L ++ CQ++
Sbjct: 387 GLWALARYALNLRQLTISYCQVT 409
Score = 38.5 bits (88), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 102/364 (28%), Positives = 165/364 (45%), Gaps = 42/364 (11%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
G +LE L++KWC I+D + L+ L+SL IS KV + + + L++L L +
Sbjct: 9 GCPRLEKLSLKWCREISDIGIDLLAKKCPELRSLNISYLKVGNGSLRSISSLERLEELAM 68
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECL 269
V +C+D D+G E SK SL+ +++ + +T E L
Sbjct: 69 ----VCCSCID-------------------DEGLELLSKGSDSLQSVDVSRCDHVTSEGL 105
Query: 270 VHL-KGLTNLESLNLDSC--GIGDEGLVNLTGLCN-LKCLELSDTQVGSSGLRHLSGLTN 325
L G ++ L C IG L L L L L+L +V S L+ + N
Sbjct: 106 ASLIDGRNFVQKLYAADCLHEIGQRFLSKLATLKETLTMLKLDGLEVSDSLLQAIGESCN 165
Query: 326 -LESINLS-FTGISDGSLRKL-AGLSSLKSLNLDA-RQITDTGLAALT-SLTGLTHLDLF 380
L I LS +G++D + L A S L++++L IT+ L ++ + L L L
Sbjct: 166 KLVEIGLSKCSGVTDDGISSLVAQCSDLRTIDLTCCNLITNNALDSIADNCKMLECLRLE 225
Query: 381 GAR-ITDSGAAYLRNF-KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 438
I + G + NL+ +++ G+ DA ++H+ S L +L L +++DK +
Sbjct: 226 SCSLINEKGLKRIATCCPNLKEIDLTDCGVDDAALEHLAKCSELRILKLGLCSSISDKGI 285
Query: 439 ELISGLTG-LVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESC-KVTANDIKRLQS-RD 493
IS G LV L++ + IT GL L K ++ L L C K+T + L S +
Sbjct: 286 AFISSNCGKLVELDLYRCNSITDDGLAALVNGCKRIKLLNLCYCNKITDTGLGHLGSLEE 345
Query: 494 LPNL 497
L NL
Sbjct: 346 LTNL 349
>gi|112959446|gb|ABI27250.1| internalin A [Listeria monocytogenes]
gi|112959466|gb|ABI27260.1| internalin A [Listeria monocytogenes]
gi|112959470|gb|ABI27262.1| internalin A [Listeria monocytogenes]
gi|112959474|gb|ABI27264.1| internalin A [Listeria monocytogenes]
gi|112959476|gb|ABI27265.1| internalin A [Listeria monocytogenes]
gi|112959478|gb|ABI27266.1| internalin A [Listeria monocytogenes]
gi|112959484|gb|ABI27269.1| internalin A [Listeria monocytogenes]
gi|112959486|gb|ABI27270.1| internalin A [Listeria monocytogenes]
gi|112959492|gb|ABI27273.1| internalin A [Listeria monocytogenes]
gi|112959494|gb|ABI27274.1| internalin A [Listeria monocytogenes]
gi|112959504|gb|ABI27279.1| internalin A [Listeria monocytogenes]
gi|112959516|gb|ABI27285.1| internalin A [Listeria monocytogenes]
gi|112959532|gb|ABI27293.1| internalin A [Listeria monocytogenes]
gi|112959534|gb|ABI27294.1| internalin A [Listeria monocytogenes]
gi|112959540|gb|ABI27297.1| internalin A [Listeria monocytogenes]
gi|112959544|gb|ABI27299.1| internalin A [Listeria monocytogenes]
gi|112959550|gb|ABI27302.1| internalin A [Listeria monocytogenes]
gi|112959554|gb|ABI27304.1| internalin A [Listeria monocytogenes]
gi|112959558|gb|ABI27306.1| internalin A [Listeria monocytogenes]
gi|112959560|gb|ABI27307.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 247
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 248 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 305
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 306 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 363
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 364 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 27 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 83 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 135
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 136 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 191
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 192 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 245
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 246 ----NISPLAGLTALT 257
>gi|112959552|gb|ABI27303.1| internalin A [Listeria monocytogenes]
gi|112959556|gb|ABI27305.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 247
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 248 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 305
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 306 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 363
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 364 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 27 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 83 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 135
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 136 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 191
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 192 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 245
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 246 ----NISPLAGLTALT 257
>gi|298359892|gb|ADI77525.1| internalin A [Listeria monocytogenes]
gi|298360422|gb|ADI77790.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|290980344|ref|XP_002672892.1| predicted protein [Naegleria gruberi]
gi|284086472|gb|EFC40148.1| predicted protein [Naegleria gruberi]
Length = 283
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 79/151 (52%)
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
+ L SLN++ IG EG ++G+ L L +S +G G + +S + L SIN+S+
Sbjct: 131 MKELTSLNINGNVIGAEGAKFISGMKQLTSLNISYNVIGDKGAKLISEMKQLISINISYN 190
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
I + ++ + L SLN+ I DTG ++ + LT LD++ RI GA Y+
Sbjct: 191 RICGEGAKFISEMKQLTSLNIANNSIGDTGAKFISGMKELTSLDIYNNRIGREGAKYISE 250
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
K L SL+I G + D VK I ++ LT L
Sbjct: 251 MKQLTSLDIGGNQIGDEEVKLISEMKQLTSL 281
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 83/155 (53%), Gaps = 1/155 (0%)
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
++ + L L ++ +G+ G + +SG+ L S+N+S+ I D + ++ + L S+N+
Sbjct: 128 ISEMKELTSLNINGNVIGAEGAKFISGMKQLTSLNISYNVIGDKGAKLISEMKQLISINI 187
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
+I G ++ + LT L++ I D+GA ++ K L SL+I + G K+
Sbjct: 188 SYNRICGEGAKFISEMKQLTSLNIANNSIGDTGAKFISGMKELTSLDIYNNRIGREGAKY 247
Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
I ++ LT L++ N + D+ ++LIS + L SL
Sbjct: 248 ISEMKQLTSLDIGGN-QIGDEEVKLISEMKQLTSL 281
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 3/159 (1%)
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
++ + L SLN++ I G ++ + LT L++ I D GA + K L S+ I
Sbjct: 128 ISEMKELTSLNINGNVIGAEGAKFISGMKQLTSLNISYNVIGDKGAKLISEMKQLISINI 187
Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
+ G K I ++ LT LN++ N + D + ISG+ L SL++ N+RI G +
Sbjct: 188 SYNRICGEGAKFISEMKQLTSLNIANNS-IGDTGAKFISGMKELTSLDIYNNRIGREGAK 246
Query: 464 HLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 502
++ +K L SL + ++ ++K + ++ L S R
Sbjct: 247 YISEMKQLTSLDIGGNQIGDEEVKLIS--EMKQLTSLRK 283
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 81/155 (52%)
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
++ +++LT LN+ G + A +S + L LN++ + D G + S++ L +N
Sbjct: 127 FISEMKELTSLNINGNVIGAEGAKFISGMKQLTSLNISYNVIGDKGAKLISEMKQLISIN 186
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
+ +N I E + + L SLN+ + IGD G ++G+ L L++ + ++G G +
Sbjct: 187 ISYNRICGEGAKFISEMKQLTSLNIANNSIGDTGAKFISGMKELTSLDIYNNRIGREGAK 246
Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
++S + L S+++ I D ++ ++ + L SL
Sbjct: 247 YISEMKQLTSLDIGGNQIGDEEVKLISEMKQLTSL 281
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 75/154 (48%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+S + L LN+N + +G + S + L LN+ +N I D+ + + L S+N+
Sbjct: 128 ISEMKELTSLNINGNVIGAEGAKFISGMKQLTSLNISYNVIGDKGAKLISEMKQLISINI 187
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
I EG ++ + L L +++ +G +G + +SG+ L S+++ I +
Sbjct: 188 SYNRICGEGAKFISEMKQLTSLNIANNSIGDTGAKFISGMKELTSLDIYNNRIGREGAKY 247
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
++ + L SL++ QI D + ++ + LT L
Sbjct: 248 ISEMKQLTSLDIGGNQIGDEEVKLISEMKQLTSL 281
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 25/176 (14%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SLNI N I K +SG+ L SL IS + + D G
Sbjct: 131 MKELTSLNIN-GNVIGAEGAKFISGMKQLTSLNISYNVIGDKG----------------- 172
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
A L +S + L +N++ ++ +G + S++ L LN+ N I D +
Sbjct: 173 -----AKL--ISEMKQLISINISYNRICGEGAKFISEMKQLTSLNIANNSIGDTGAKFIS 225
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
G+ L SL++ + IG EG ++ + L L++ Q+G ++ +S + L S+
Sbjct: 226 GMKELTSLDIYNNRIGREGAKYISEMKQLTSLDIGGNQIGDEEVKLISEMKQLTSL 281
>gi|223698610|gb|ACN18980.1| internalin A [Listeria monocytogenes]
gi|223698616|gb|ACN18984.1| internalin A [Listeria monocytogenes]
gi|223698631|gb|ACN18994.1| internalin A [Listeria monocytogenes]
gi|223698637|gb|ACN18998.1| internalin A [Listeria monocytogenes]
gi|223698640|gb|ACN19000.1| internalin A [Listeria monocytogenes]
gi|223698649|gb|ACN19006.1| internalin A [Listeria monocytogenes]
gi|223698652|gb|ACN19008.1| internalin A [Listeria monocytogenes]
gi|223698661|gb|ACN19014.1| internalin A [Listeria monocytogenes]
gi|223698667|gb|ACN19018.1| internalin A [Listeria monocytogenes]
gi|223698676|gb|ACN19024.1| internalin A [Listeria monocytogenes]
gi|223698679|gb|ACN19026.1| internalin A [Listeria monocytogenes]
gi|223698685|gb|ACN19030.1| internalin A [Listeria monocytogenes]
gi|223698688|gb|ACN19032.1| internalin A [Listeria monocytogenes]
gi|223698709|gb|ACN19046.1| internalin A [Listeria monocytogenes]
gi|223698721|gb|ACN19054.1| internalin A [Listeria monocytogenes]
gi|223698724|gb|ACN19056.1| internalin A [Listeria monocytogenes]
gi|223698727|gb|ACN19058.1| internalin A [Listeria monocytogenes]
gi|223698730|gb|ACN19060.1| internalin A [Listeria monocytogenes]
gi|223698733|gb|ACN19062.1| internalin A [Listeria monocytogenes]
gi|223698742|gb|ACN19068.1| internalin A [Listeria monocytogenes]
gi|223698763|gb|ACN19082.1| internalin A [Listeria monocytogenes]
gi|223698790|gb|ACN19100.1| internalin A [Listeria monocytogenes]
gi|223698808|gb|ACN19112.1| internalin A [Listeria monocytogenes]
gi|223698811|gb|ACN19114.1| internalin A [Listeria monocytogenes]
gi|223698823|gb|ACN19122.1| internalin A [Listeria monocytogenes]
gi|223698853|gb|ACN19142.1| internalin A [Listeria monocytogenes]
gi|223698874|gb|ACN19156.1| internalin A [Listeria monocytogenes]
gi|223698889|gb|ACN19166.1| internalin A [Listeria monocytogenes]
gi|223698949|gb|ACN19206.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 341
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 342 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 374
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 5 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 61 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 113
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|112959518|gb|ABI27286.1| internalin A [Listeria monocytogenes]
gi|112959520|gb|ABI27287.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 247
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 248 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 305
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 306 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 363
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 364 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 27 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 83 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 135
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 136 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 191
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 192 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 245
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 246 ----NISPLAGLTALT 257
>gi|149674|gb|AAA25289.1| internalin [Listeria monocytogenes]
gi|22347564|gb|AAM95927.1| internalin A precursor [Listeria monocytogenes]
Length = 744
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 254
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 255 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 312
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 313 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 370
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 371 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 403
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 34 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 89
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 90 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 142
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 143 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 198
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 199 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 252
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 253 ----NISPLAGLTALT 264
>gi|422808574|ref|ZP_16856985.1| Internalin A [Listeria monocytogenes FSL J1-208]
gi|378752188|gb|EHY62773.1| Internalin A [Listeria monocytogenes FSL J1-208]
Length = 802
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|219821372|gb|ACL37826.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKV 368
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 34 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 86
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 87 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 141
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 142 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 199
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 200 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 250
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 251 -NISPLAGLTALT 262
>gi|130774759|gb|ABO32394.1| InlA [Listeria monocytogenes]
gi|298360132|gb|ADI77645.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|194239378|emb|CAQ76829.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNKISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|112961622|gb|ABI28434.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 261
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 262 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 319
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 320 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 377
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 378 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 41 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 96
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 97 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 149
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 150 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 205
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 206 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 259
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 260 ----NISPLAGLTALT 271
>gi|290995863|ref|XP_002680502.1| predicted protein [Naegleria gruberi]
gi|284094123|gb|EFC47758.1| predicted protein [Naegleria gruberi]
Length = 350
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 108/220 (49%), Gaps = 1/220 (0%)
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
+ F + L ++ + + D + +T L SLN+ + + + + NL CL
Sbjct: 119 DAFKLMKGLTTFDISYTYVHDREAKIISEMTQLTSLNVSNSIRIKKSIAYFREMNNLTCL 178
Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
+ + +G +H+S + L +++ GI + ++ L L L++ + I + G
Sbjct: 179 NIGNNGIGVECAKHVSEMKQLTILHICGNGIKFEGAKFISELQQLTKLDVSSNNIGEQGA 238
Query: 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
++ L LT+LD++ RI GA ++ K L L I + G K+I ++ L L
Sbjct: 239 KYISQLKQLTNLDIYSNRIGAQGAKHISEMKQLTRLNISYNDINVEGAKYISEMKQLINL 298
Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
N+++N N+ D+ ISG+ L +L + N+ I++AG +++
Sbjct: 299 NITKN-NIGDEGARHISGMNQLTNLFIGNNNISNAGFQNI 337
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 120/251 (47%), Gaps = 19/251 (7%)
Query: 134 VKLDLERCTRIHGGLV-NLKGLMKLESLN--IKWCNC----------------ITDSDMK 174
V++D+ + +R+ G + N+ + L ++N I++ + + D + K
Sbjct: 84 VRIDIGKMSRVQGQFLENIASVKALNAINHLIQYRDAFKLMKGLTTFDISYTYVHDREAK 143
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+S +T L SL +S S IAY + + LT LN+ + C +S + L L+
Sbjct: 144 IISEMTQLTSLNVSNSIRIKKSIAYFREMNNLTCLNIGNNGIGVECAKHVSEMKQLTILH 203
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+ + +G + S++ L L++ N I ++ ++ L L +L++ S IG +G
Sbjct: 204 ICGNGIKFEGAKFISELQQLTKLDVSSNNIGEQGAKYISQLKQLTNLDIYSNRIGAQGAK 263
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
+++ + L L +S + G +++S + L ++N++ I D R ++G++ L +L
Sbjct: 264 HISEMKQLTRLNISYNDINVEGAKYISEMKQLINLNITKNNIGDEGARHISGMNQLTNLF 323
Query: 355 LDARQITDTGL 365
+ I++ G
Sbjct: 324 IGNNNISNAGF 334
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 107/228 (46%), Gaps = 7/228 (3%)
Query: 251 IGSLKVLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
I S+K LN N + + +KGLT + ++ + D ++ + L L +S
Sbjct: 102 IASVKALN-AINHLIQYRDAFKLMKGLT---TFDISYTYVHDREAKIISEMTQLTSLNVS 157
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
++ + + + NL +N+ GI + ++ + L L++ I G +
Sbjct: 158 NSIRIKKSIAYFREMNNLTCLNIGNNGIGVECAKHVSEMKQLTILHICGNGIKFEGAKFI 217
Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
+ L LT LD+ I + GA Y+ K L +L+I + G KHI ++ LT LN+S
Sbjct: 218 SELQQLTKLDVSSNNIGEQGAKYISQLKQLTNLDIYSNRIGAQGAKHISEMKQLTRLNIS 277
Query: 429 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
N ++ + + IS + L++LN++ + I G RH+ + L +L +
Sbjct: 278 YN-DINVEGAKYISEMKQLINLNITKNNIGDEGARHISGMNQLTNLFI 324
>gi|112961697|gb|ABI28484.1| internalin A [Listeria monocytogenes]
gi|112961709|gb|ABI28492.1| internalin A [Listeria monocytogenes]
gi|112961730|gb|ABI28506.1| internalin A [Listeria monocytogenes]
gi|112961760|gb|ABI28526.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 261
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 262 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 319
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 320 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 377
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 378 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 41 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 96
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 97 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 149
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 150 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 205
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 206 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 259
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 260 ----NISPLAGLTALT 271
>gi|29423714|gb|AAO73555.1| internalin A [Listeria monocytogenes]
Length = 743
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 41 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 94
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 95 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 146
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 147 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 199
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 200 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 253
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 254 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 311
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 312 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 369
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 370 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 402
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 33 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 88
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 89 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 141
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 142 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 197
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 198 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 251
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 252 ----NISPLAGLTALT 263
>gi|112959506|gb|ABI27280.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 247
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 248 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 305
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 306 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 363
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 364 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 27 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 83 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 135
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 136 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 191
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 192 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 245
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 246 ----NISPLAGLTALT 257
>gi|195585785|ref|XP_002082659.1| GD25110 [Drosophila simulans]
gi|194194668|gb|EDX08244.1| GD25110 [Drosophila simulans]
Length = 522
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 147/308 (47%), Gaps = 51/308 (16%)
Query: 35 DLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLK-DCSNLQSLDFNFCI 92
D+ LG + D + IA +L +++L G ++T++GL+ + L+ L+ C
Sbjct: 249 DMNLGHAFSITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSCW 308
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-- 150
ISD G+ HL G S T+ G + L L L+ C R+ +
Sbjct: 309 HISDQGIGHLAGFSRETA-----------------EGNLQLEYLGLQDCQRLSDEALGHI 351
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTL 208
+GL L+S+N+ +C +TDS +K L+ + L+ L + SC ++D G+AYL +G +
Sbjct: 352 AQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINS 411
Query: 209 LNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
L++ C ++ L ++ L L L+LN+CQ++D G K +
Sbjct: 412 LDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIA----------------- 454
Query: 267 ECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGL 323
K L LE+LN+ C I D+GL L L NLK ++L TQ+ S G+ + L
Sbjct: 455 ------KALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKL 508
Query: 324 TNLESINL 331
L+ +NL
Sbjct: 509 PKLQKLNL 516
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 108/347 (31%), Positives = 164/347 (47%), Gaps = 64/347 (18%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
RG+ + LS RR+ G+ A L NL G + +N+
Sbjct: 212 RGIKKVQILSLRRSLKDLVLGVPALTSL-------------------NLSGCFNVADMNL 252
Query: 163 KWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGCPVTA- 218
ITD+ + ++ L NL++L++ C +T++G+ + GL+KL LNL C +
Sbjct: 253 GHAFSITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISD 312
Query: 219 ------ACLDSLSALGSLF--YLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDE 267
A +A G+L YL L CQ LSD+ ++ + SLK +NL F +TD
Sbjct: 313 QGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDS 372
Query: 268 CLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
L HL + LE LNL SC I D G+ LT G SG +
Sbjct: 373 GLKHLARMPKLEQLNLRSCDNISDIGMAYLT--------------EGGSG---------I 409
Query: 327 ESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-A 382
S+++SF ISD +L +A GL L+SL+L+ QITD G+ + +L L +L++ +
Sbjct: 410 NSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLNIGQCS 469
Query: 383 RITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 427
RITD G L + NL+++++ G L+ G+ I L L LNL
Sbjct: 470 RITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 516
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 121/222 (54%), Gaps = 19/222 (8%)
Query: 274 GLTNLESLNLDSCG-IGDEGLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-G 322
GL L+ LNL SC I D+G+ +L G L+ L L D Q + L H++ G
Sbjct: 295 GLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQG 354
Query: 323 LTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL 379
LT+L+SINLSF ++D L+ LA + L+ LNL + I+D G+A LT +G+ LD+
Sbjct: 355 LTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDV 414
Query: 380 -FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDK 436
F +I+D ++ + LRSL + +TD G+ I K L L LN+ Q +TDK
Sbjct: 415 SFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLNIGQCSRITDK 474
Query: 437 TLE-LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 476
L+ L LT L ++++ ++++S G+ + L L+ L L
Sbjct: 475 GLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 516
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 113/235 (48%), Gaps = 32/235 (13%)
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE---SIN 330
G+ L SLNL C N+ + ++DT +G +HL L LE N
Sbjct: 232 GVPALTSLNLSGC-------FNVADMNLGHAFSITDTSLGRIA-QHLRNLETLELGGCCN 283
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-----GLTHLDLFG--- 381
++ TG+ L GL LK LNL + I+D G+ L + G L+ G
Sbjct: 284 ITNTGL----LLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQD 339
Query: 382 -ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
R++D ++ + +L+S L C +TD+G+KH+ + L LNL N++D
Sbjct: 340 CQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLRSCDNISDIG 398
Query: 438 LE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 489
+ L G +G+ SL+VS +I+ L H+ + L LRSL+L C++T + + ++
Sbjct: 399 MAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKI 453
>gi|150371828|dbj|BAF65703.1| internalin A [Listeria monocytogenes]
Length = 526
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|322952090|gb|ADX21044.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|85679230|gb|ABC72031.1| InlA [Listeria monocytogenes]
Length = 794
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 203 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 255
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 256 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 309
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 310 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 367
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 368 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKV 425
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 426 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 458
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 91 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 143
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 144 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 198
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 199 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 256
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 257 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 307
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 308 -NISPLAGLTALT 319
>gi|219821339|gb|ACL37804.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 368
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 87
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 140
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|313485079|gb|ADR53010.1| InlA [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|322952088|gb|ADX21043.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|313485044|gb|ADR52997.1| InlA [Listeria monocytogenes]
Length = 771
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|85679234|gb|ABC72033.1| InlA [Listeria monocytogenes]
Length = 794
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 121/393 (30%), Positives = 182/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 203 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 255
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 256 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 309
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS------------- 340
L GL L LEL++ Q+ + +S L NL + L F ISD S
Sbjct: 310 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSNLTKLQRLFF 367
Query: 341 -------LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
+ LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 368 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 425
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 426 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 458
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 89 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 144
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 145 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 197
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 253
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 307
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 308 ----NISPLAGLTALT 319
>gi|401420706|ref|XP_003874842.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322491078|emb|CBZ26343.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 1207
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 94/307 (30%), Positives = 147/307 (47%), Gaps = 43/307 (14%)
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
SG+ L L++L L++ P+ L +L+ SL + L+RC+ E ++ L
Sbjct: 421 SGVRSLGSLKQLRCLHILHTPLHETFLQALNTCSSLECIILHRCR-GVRSLEPLRRLEHL 479
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK-CLELSDTQVG 313
+ L+L +TD L+ L G T+L L LD C + +L+ L NL+ LE
Sbjct: 480 QSLSLHGLSVTDTDLLSLAGCTHLRQLVLDEC----RQITDLSFLANLRGTLE------- 528
Query: 314 SSGLRHLSGLTNLESINLSFTGISDG-------SLRKLA------GLSSLKSLNLDARQI 360
R L T L ++N+ G+ D SLR+L L++L+ LNL +
Sbjct: 529 ----RLLMPRTLLSNVNMQHIGLCDKLVELHLQSLRQLTDIGMLKDLTALRVLNLSDNLV 584
Query: 361 TDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYL---RNFKNLRSLEICGGGLTDAGVKHI 416
TD G +AL L L L+L R IT AA+ R L SL++ +TD GV+ +
Sbjct: 585 TDEGCSALHCLPSLQRLNLASCRCITSLAAAFTASGRWMHRLLSLDLSHTNITDVGVQFV 644
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS---LNVSNSRITSAGLRHLKP-LKNLR 472
++ + L LNL C + L L+ L ++S LN+ +R+T+ +H P +NLR
Sbjct: 645 QECTDLRYLNL-YGC----RELRLLPWLQKMISLRWLNLGGTRVTNEETKHYLPCARNLR 699
Query: 473 SLTLESC 479
L+L C
Sbjct: 700 FLSLSGC 706
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 143/312 (45%), Gaps = 51/312 (16%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+ L G VTD+ L+ L C++L+ L + C QI+D LSF N
Sbjct: 479 LQSLSLHGLSVTDTDLLSLAGCTHLRQLVLDECRQITD--------------LSFLANLR 524
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
T + + L++ V + H GL + KL L+++ +TD M L
Sbjct: 525 GTLERLLMPRTLLSNVNMQ-------HIGLCD-----KLVELHLQSLRQLTDIGM--LKD 570
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA--------LGSL 230
LT L+ L +S + VTD G + L L L LNL C C+ SL+A + L
Sbjct: 571 LTALRVLNLSDNLVTDEGCSALHCLPSLQRLNLASC----RCITSLAAAFTASGRWMHRL 626
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L+L+ ++D G + + L+ LNL G E+ L L+ + +L LNL +
Sbjct: 627 LSLDLSHTNITDVGVQFVQECTDLRYLNLYGCREL--RLLPWLQKMISLRWLNLGGTRVT 684
Query: 290 DEGLVN-LTGLCNLKCLELSDTQVGSSGLRHLS---GLTNLESINLSFTGISDGSLRKLA 345
+E + L NL+ L LS G S +R LS L +LE +NL T ++D L L
Sbjct: 685 NEETKHYLPCARNLRFLSLS----GCSSVRLLSFAVKLHHLEYLNLESTSVADSELSCLC 740
Query: 346 GLSSLKSLNLDA 357
L+ L+L++
Sbjct: 741 HCRKLRYLSLES 752
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 93/320 (29%), Positives = 144/320 (45%), Gaps = 30/320 (9%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL-GSLF 231
++PL L +L+SL + VTD+ + L G L L L+ C L L+ L G+L
Sbjct: 470 LEPLRRLEHLQSLSLHGLSVTDTDLLSLAGCTHLRQLVLDECRQITD-LSFLANLRGTLE 528
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L + R LS+ + L L+L ++TD + LK LT L LNL + D
Sbjct: 529 RLLMPRTLLSNVNMQHIGLCDKLVELHLQSLRQLTD--IGMLKDLTALRVLNLSDNLVTD 586
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
EG L L +L+ L L+ + + S+ +FT R L
Sbjct: 587 EGCSALHCLPSLQRLNLASCRC-------------ITSLAAAFTASGRWMHR-------L 626
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
SL+L ITD G+ + T L +L+L+G R +L+ +LR L + G +T+
Sbjct: 627 LSLDLSHTNITDVGVQFVQECTDLRYLNLYGCRELRL-LPWLQKMISLRWLNLGGTRVTN 685
Query: 411 AGVKHIKDLS-SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 469
KH + +L L+LS C+ + + L L L LN+ ++ + + L L +
Sbjct: 686 EETKHYLPCARNLRFLSLS-GCS-SVRLLSFAVKLHHLEYLNLESTSVADSELSCLCHCR 743
Query: 470 NLRSLTLESCKVTANDIKRL 489
LR L+LESC V D+ L
Sbjct: 744 KLRYLSLESC-VDIRDVSPL 762
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 97/192 (50%), Gaps = 9/192 (4%)
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSL 350
G+ +L L L+CL + T + + L+ L+ ++LE I L G+ SL L L L
Sbjct: 422 GVRSLGSLKQLRCLHILHTPLHETFLQALNTCSSLECIILHRCRGVR--SLEPLRRLEHL 479
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFK-NLRSLEICGGGL 408
+SL+L +TDT L +L T L L L R ITD ++L N + L L + L
Sbjct: 480 QSLSLHGLSVTDTDLLSLAGCTHLRQLVLDECRQITD--LSFLANLRGTLERLLMPRTLL 537
Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 468
++ ++HI L L+L LTD + ++ LT L LN+S++ +T G L L
Sbjct: 538 SNVNMQHIGLCDKLVELHLQSLRQLTD--IGMLKDLTALRVLNLSDNLVTDEGCSALHCL 595
Query: 469 KNLRSLTLESCK 480
+L+ L L SC+
Sbjct: 596 PSLQRLNLASCR 607
>gi|223698871|gb|ACN19154.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 341
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 342 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 5 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 61 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 113
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|77556733|gb|ABA99529.1| Leucine Rich Repeat family protein, expressed [Oryza sativa
Japonica Group]
Length = 488
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 131/448 (29%), Positives = 196/448 (43%), Gaps = 94/448 (20%)
Query: 80 CSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
C L+ L +C +ISD G++ L + L SL I+ +K+
Sbjct: 10 CPRLEKLSLKWCREISDIGIDLLSKKCHELRSLD------------------ISYLKVGN 51
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS-CSKVTDSG 196
E L ++ L KLE L + C+CI D ++ L G +L+S+ +S C VT G
Sbjct: 52 E-------SLRSISSLEKLEELAMVCCSCIDDDGLELLGKGSNSLQSVDVSRCDHVTSQG 104
Query: 197 IAYL----KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
+A L LQKL AA DSL + F NL + L D
Sbjct: 105 LASLIDGHNFLQKLN----------AA--DSLHEMRQSFLSNLAK--LKD---------- 140
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC------NLKCL 305
+L VL L E++ L+ + G NL + L C G+ DEG+ +L C +L C
Sbjct: 141 TLTVLRLDGLEVSSSVLLAIGGCNNLVEIGLSKCNGVTDEGISSLVTQCSHLRVIDLTCC 200
Query: 306 EL----------------------SDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLR 342
L S + + GL ++ NL+ I+L+ G++D +L+
Sbjct: 201 NLLTNNALDSIAENCKMVEHLRLESCSSISEKGLEQIATSCPNLKEIDLTDCGVNDAALQ 260
Query: 343 KLAGLSSLKSLNLD-ARQITDTGLAALTSLTG-LTHLDLFGAR-ITDSGAAYLRN-FKNL 398
LA S L L L I+D GLA ++S G L LDL+ ITD G A L N K +
Sbjct: 261 HLAKCSELLVLKLGLCSSISDKGLAFISSSCGKLIELDLYRCNSITDDGLAALANGCKKI 320
Query: 399 RSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSNSR 456
+ L +C +TD+G+ H+ L LT L L +T + ++ G L+ +++
Sbjct: 321 KMLNLCYCNKITDSGLGHLGSLEELTNLELRCLVRITGIGISSVAIGCKNLIEIDLKRCY 380
Query: 457 -ITSAGLRHLKPLK-NLRSLTLESCKVT 482
+ AGL L NLR LT+ C+VT
Sbjct: 381 SVDDAGLWALARYALNLRQLTISYCQVT 408
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 97/206 (47%), Gaps = 28/206 (13%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL- 102
+++K ++ IA+ +L +DL+ V D+ L HL CS L L C ISD GL +
Sbjct: 229 ISEKGLEQIATSCPNLKEIDLTDCGVNDAALQHLAKCSELLVLKLGLCSSISDKGLAFIS 288
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L L R N+IT G+ A A G K++ LN+
Sbjct: 289 SSCGKLIELDLYRCNSITDDGLAALA-----------------------NGCKKIKMLNL 325
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLK-GLQKLTLLNLEGC-PVTAA 219
+CN ITDS + L L L +L++ C ++T GI+ + G + L ++L+ C V A
Sbjct: 326 CYCNKITDSGLGHLGSLEELTNLELRCLVRITGIGISSVAIGCKNLIEIDLKRCYSVDDA 385
Query: 220 CLDSLSALG-SLFYLNLNRCQLSDDG 244
L +L+ +L L ++ CQ++ G
Sbjct: 386 GLWALARYALNLRQLTISYCQVTGLG 411
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 105/363 (28%), Positives = 169/363 (46%), Gaps = 41/363 (11%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTN-LKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
G +LE L++KWC I+D + LS + L+SL IS KV + + + L+KL L +
Sbjct: 9 GCPRLEKLSLKWCREISDIGIDLLSKKCHELRSLDISYLKVGNESLRSISSLEKLEELAM 68
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECL 269
V +C+D DDG E K SL+ +++ + +T + L
Sbjct: 69 ----VCCSCID-------------------DDGLELLGKGSNSLQSVDVSRCDHVTSQGL 105
Query: 270 VHL-KGLTNLESLNL-DSCG-IGDEGLVNLTGLCN-LKCLELSDTQVGSSGLRHLSGLTN 325
L G L+ LN DS + L NL L + L L L +V SS L + G N
Sbjct: 106 ASLIDGHNFLQKLNAADSLHEMRQSFLSNLAKLKDTLTVLRLDGLEVSSSVLLAIGGCNN 165
Query: 326 LESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLTGLT-HLDLFG 381
L I LS G++D + L S L+ ++L +T+ L ++ + HL L
Sbjct: 166 LVEIGLSKCNGVTDEGISSLVTQCSHLRVIDLTCCNLLTNNALDSIAENCKMVEHLRLES 225
Query: 382 -ARITDSGAAYLR-NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
+ I++ G + + NL+ +++ G+ DA ++H+ S L +L L +++DK L
Sbjct: 226 CSSISEKGLEQIATSCPNLKEIDLTDCGVNDAALQHLAKCSELLVLKLGLCSSISDKGLA 285
Query: 440 LISGLTG-LVSLNVSN-SRITSAGLRHLK-PLKNLRSLTLESC-KVTANDIKRLQS-RDL 494
IS G L+ L++ + IT GL L K ++ L L C K+T + + L S +L
Sbjct: 286 FISSSCGKLIELDLYRCNSITDDGLAALANGCKKIKMLNLCYCNKITDSGLGHLGSLEEL 345
Query: 495 PNL 497
NL
Sbjct: 346 TNL 348
>gi|298360122|gb|ADI77640.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALISPATISDGGSYAEPDIT 459
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|313485056|gb|ADR53002.1| InlA [Listeria monocytogenes]
Length = 789
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|219821318|gb|ACL37790.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKV 368
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|15896519|ref|NP_349868.1| ChW repeat-containing protein [Clostridium acetobutylicum ATCC 824]
gi|337738478|ref|YP_004637925.1| ChW repeat-containing protein [Clostridium acetobutylicum DSM 1731]
gi|384459988|ref|YP_005672408.1| putative surface protein, responsible for cell interaction;
contains cell adhesion domain and ChW-repeats
[Clostridium acetobutylicum EA 2018]
gi|15026350|gb|AAK81208.1|AE007823_2 Possible surface protein, responsible for cell interaction;
contains cell adhesion domain and ChW-repeats
[Clostridium acetobutylicum ATCC 824]
gi|325510677|gb|ADZ22313.1| putative surface protein, responsible for cell interaction;
contains cell adhesion domain and ChW-repeats
[Clostridium acetobutylicum EA 2018]
gi|336291611|gb|AEI32745.1| ChW repeat-containing protein [Clostridium acetobutylicum DSM 1731]
Length = 874
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 106/357 (29%), Positives = 173/357 (48%), Gaps = 58/357 (16%)
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
+G + +L + KL +L I N TD D+ P+ LTNL L I SK+++ +
Sbjct: 540 YGNVTDLTPISKLSNLKILSLNGDTDIDISPIGNLTNLNQLDIGESKISNINVLNKLNNL 599
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNL---NRCQLSDDGCEKFSKIGSLKVLNLGF 261
+L+ + S LGSL L L + C SD +K+ +L ++L +
Sbjct: 600 NYLILDKN------TSIKDFSPLGSLTNLTLLQASYCNFSD--LTPLAKMKNLSRVSLNY 651
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
N IT + LK TNL L L I D +T + N
Sbjct: 652 NNIT--SIEPLKSSTNLVDLVLSGNKISD-----ITPVAN-------------------- 684
Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
LTNLESI+LS+ +++ + LA L+ LKSL LD TG++ ++SL+GLT+L+ G
Sbjct: 685 -LTNLESISLSYNQVNN--ISSLAKLTKLKSLMLD-----HTGISDISSLSGLTNLNYLG 736
Query: 382 ARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
+ + L+N NL +L+I +++ V I +L++LTLL+++ N +
Sbjct: 737 VQDNNIEDITSLKNLTNLANLKISQNKISN--VDAIGNLTNLTLLDMNNN---QISNINA 791
Query: 441 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 497
I T L+SL++ +++++ + L L NL SL L + + ND+ L +DL +L
Sbjct: 792 IKNSTKLISLSMHHNKVSD--ISALSKLTNLESLNLGNNPI--NDVTPL--KDLSHL 842
>gi|441470006|emb|CCQ19761.1| Internalin-A [Listeria monocytogenes]
Length = 489
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|326507660|dbj|BAK03223.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 454
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 127/449 (28%), Positives = 201/449 (44%), Gaps = 74/449 (16%)
Query: 82 NLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+L+ LD + C ++ G+ + + L NL L+ +TA K F L L L LE
Sbjct: 41 SLRVLDMSTCRNVTHTGVSSVVKALPNLLELNLSYCCNVTASMGKCFQMLPKLQTLKLEG 100
Query: 141 CTRIHGGLVNLK-GLMKLESLNIKWCNCITDSDMK-PLSGLTNLKSLQISCSK-VTDSGI 197
C + GL ++ + L L++ C+ +TD+D+ +S L NL L I+C++ +TD +
Sbjct: 101 CKFMADGLKHIGISCVSLRELSLSKCSGVTDTDLSFVVSRLKNLLKLDITCNRNITDVSL 160
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSK-IGSLK 255
A +T++C SL L + C S +G K L+
Sbjct: 161 A----------------AITSSC-------HSLISLRIESCSHFSSEGLRLIGKRCCHLE 197
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGS 314
L++ +++ DE L L G + L SL + C I D+GL+++ C EL D +
Sbjct: 198 ELDITDSDLDDEGLKALSGCSKLSSLKIGICMRISDQGLIHI----GKSCPELRDIDLYR 253
Query: 315 SGLRHLSGLTN-------LESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGL 365
SG G+T LESINLS+ T I+D SL L+ + L +L + I+ GL
Sbjct: 254 SGGISDEGVTQIAQGCPMLESINLSYCTEITDVSLMSLSKCAKLNTLEIRGCPSISSAGL 313
Query: 366 AALT-SLTGLTHLDLFGA-RITDSGAAYLRNFKN-LRSLEICGGGLTDAGVKHIKDLSSL 422
+ + L LD+ I D G +L F + LR + + +TD G
Sbjct: 314 SEIAIGCRLLAKLDVKKCFAINDVGMFFLSQFSHSLRQINLSYCSVTDIG---------- 363
Query: 423 TLLNLSQNCNLTDKTLELISGLTG---LVSLNVSN--SRIT-SAGLRHLKPLKNLRSLTL 476
LL+LS C L + T+ ++G+T L +L VS +R+ A R + P L+ +
Sbjct: 364 -LLSLSSICGLQNMTIVHLAGITPNGLLAALMVSGGLTRVKLHAAFRSMMPPHMLKVVEA 422
Query: 477 ESC---------KVTAN--DIKRLQSRDL 494
C KV DI + QSRD+
Sbjct: 423 RGCAFQWIDKPFKVEQERCDIWQQQSRDV 451
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 123/271 (45%), Gaps = 40/271 (14%)
Query: 13 ELVYSRCLTEVSLEAFRDC--ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT 70
++ +R +T+VSL A +L L + + + + +I + L +D++ SD+
Sbjct: 148 DITCNRNITDVSLAAITSSCHSLISLRIESCSHFSSEGLRLIGKRCCHLEELDITDSDLD 207
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAG 129
D GL L CS L SL C++ISD GL H+ + L + R+ I+ +G+ A
Sbjct: 208 DEGLKALSGCSKLSSLKIGICMRISDQGLIHIGKSCPELRDIDLYRSGGISDEGVTQIA- 266
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
+G LES+N+ +C ITD + LS L +L+I
Sbjct: 267 ----------------------QGCPMLESINLSYCTEITDVSLMSLSKCAKLNTLEIRG 304
Query: 189 CSKVTDSGIAYLK-GLQKLTLLNLEGC-PVTAACLDSLSALG-SLFYLNLNRCQLSDDGC 245
C ++ +G++ + G + L L+++ C + + LS SL +NL+ C ++D G
Sbjct: 305 CPSISSAGLSEIAIGCRLLAKLDVKKCFAINDVGMFFLSQFSHSLRQINLSYCSVTDIGL 364
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
S I L+ + +VHL G+T
Sbjct: 365 LSLSSICGLQNMT----------IVHLAGIT 385
>gi|112961772|gb|ABI28534.1| internalin A [Listeria monocytogenes]
Length = 748
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 261
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 262 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 319
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 320 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 377
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 378 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 41 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 96
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 97 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 149
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 150 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 205
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 206 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 259
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 260 ----NISPLAGLTALT 271
>gi|112961700|gb|ABI28486.1| internalin A [Listeria monocytogenes]
Length = 748
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 207
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 208 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 261
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 262 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 319
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 320 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 377
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 378 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 41 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 96
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 97 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 149
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 150 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 205
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 206 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 259
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 260 ----NISPLAGLTALT 271
>gi|313485046|gb|ADR52998.1| InlA [Listeria monocytogenes]
Length = 774
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|29823175|emb|CAD15502.2| probable lrr-gala family type III effector protein (gala 4)
[Ralstonia solanacearum GMI1000]
Length = 462
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/299 (29%), Positives = 130/299 (43%), Gaps = 24/299 (8%)
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
+T +GIA L L L L++ GC + A L++ +L LN++R + DDG +
Sbjct: 155 PITSAGIARLLAL-PLERLDVSGCGLDAESARLLASHPTLTVLNISRNAIGDDGAAALAA 213
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
L LN+G N I+D L L L++ IGD G L G L L+ D
Sbjct: 214 NPKLTSLNVGRNGISDAGARALVACAGLTKLDISDNRIGDAGARALAGSAKLNKLDAGDC 273
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
+G G R L+ L ++L + I G LA L SLN+ + G A L +
Sbjct: 274 GIGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLNVCGNALGSAGAALLAA 333
Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
LT LD+ I ++GA L L L + G+ +AG + + ++LT L++ N
Sbjct: 334 SAALTELDIGNNGIGNAGARALGANATLVKLSVANNGIEEAGARALAASTTLTALDIGSN 393
Query: 431 -----------CNLTDKTLELISGLTG------------LVSLNVSNSRITSAGLRHLK 466
N T TL+ + G L +LNV +RI AG+R L+
Sbjct: 394 RIGDAGAQALAANDTLVTLDASANWIGDPGALALADNTRLATLNVGANRIGEAGMRALE 452
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 106/233 (45%), Gaps = 1/233 (0%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
KL SLN+ N I+D+ + L L L IS +++ D+G L G KL L+ C
Sbjct: 216 KLTSLNVG-RNGISDAGARALVACAGLTKLDISDNRIGDAGARALAGSAKLNKLDAGDCG 274
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+ +L+A +L L+L ++ G E + L LN+ N + L
Sbjct: 275 IGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLNVCGNALGSAGAALLAAS 334
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
L L++ + GIG+ G L L L +++ + +G R L+ T L ++++
Sbjct: 335 AALTELDIGNNGIGNAGARALGANATLVKLSVANNGIEEAGARALAASTTLTALDIGSNR 394
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
I D + LA +L +L+ A I D G AL T L L++ RI ++G
Sbjct: 395 IGDAGAQALAANDTLVTLDASANWIGDPGALALADNTRLATLNVGANRIGEAG 447
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 98/251 (39%), Gaps = 29/251 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L +D+S + + D+G L + L LD C
Sbjct: 239 AGLTKLDISDNRIGDAGARALAGSAKLNKLDAGDC------------------------- 273
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC-NCITDSDMKP 175
I +G +A A L +LDL GG L +L SLN+ C N + +
Sbjct: 274 -GIGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLNV--CGNALGSAGAAL 330
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ L L I + + ++G L L L++ + A +L+A +L L++
Sbjct: 331 LAASAALTELDIGNNGIGNAGARALGANATLVKLSVANNGIEEAGARALAASTTLTALDI 390
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
++ D G + + +L L+ N I D + L T L +LN+ + IG+ G+
Sbjct: 391 GSNRIGDAGAQALAANDTLVTLDASANWIGDPGALALADNTRLATLNVGANRIGEAGMRA 450
Query: 296 LTGLCNLKCLE 306
L L L+
Sbjct: 451 LEASTTLAVLK 461
>gi|449530965|ref|XP_004172462.1| PREDICTED: LOW QUALITY PROTEIN: F-box/LRR-repeat protein 3-like
[Cucumis sativus]
Length = 661
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 129/460 (28%), Positives = 204/460 (44%), Gaps = 61/460 (13%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L+ LCL + D + +IA++ L S+DLS +T+ L + +L+ L C
Sbjct: 187 LKLLCLNWCLHITDLGVGLIATKCKELRSLDLSFLPITEKCLPTILQLQHLEELILEECH 246
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNL 151
I D GLE L+ SL F L+L RC I H GL +L
Sbjct: 247 GIDDEGLEALQRNCKRNSLKF----------------------LNLSRCPSISHSGLSSL 284
Query: 152 -KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ-KLTLL 209
G L+ LN+ + + IT K L + L+S+++ C +T SG+ L + L L
Sbjct: 285 IIGSEDLQKLNLSYGSSITTDMAKCLHNFSGLQSIKLDCCSLTTSGVKPLXNWRASLKEL 344
Query: 210 NLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
+L C VT CL S+ + + D C + GS+ N IT C
Sbjct: 345 SLSKCAGVTDECL-------SILVQKHKQLRKLDITCCRKITYGSI-------NSITSSC 390
Query: 269 LVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN-LKCLELSDTQVGSSGLRHLSGLTNL 326
+ L SL ++SC + E V + C L+ L+L+D ++ + GL+ +S + L
Sbjct: 391 -------SFLVSLKMESCSLVPREAYVLIGQRCPYLEELDLTDNEIDNEGLKSISKCSRL 443
Query: 327 ESINLSFT-GISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL---- 379
+ L I+D L +A +K L+L + ITD G+AA G L++
Sbjct: 444 SVLKLGICLNINDDGLCHIASACPKIKELDLYRSTGITDRGIAATAG--GCPALEMINIA 501
Query: 380 FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIK-DLSSLTLLNLSQNCNLTDK- 436
+ +ITDS L NL++LEI G ++ G+ I LT+L++ + N+ D
Sbjct: 502 YNDKITDSSLISLSKCLNLKALEIRGCCCISSIGLSAIAMGCKQLTVLDIKKCVNVNDDG 561
Query: 437 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
L L L +N+S +T GL L + LR++T+
Sbjct: 562 MLPLAQFSHNLKQINLSYCSVTDVGLLSLASINCLRNMTI 601
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 123/463 (26%), Positives = 207/463 (44%), Gaps = 39/463 (8%)
Query: 49 MDVIASQGSSLLSVDLS-GSDVTDSGLIHLKDC--SNLQSLDFNFCIQISDGGLEHL-RG 104
+ ++ + S+ +DL+ V DS LI + + L+S+D + S+ GL +L
Sbjct: 73 IQTVSPRYPSISKLDLTLCPHVEDSFLISVSTAWKTTLRSIDLSRSRSFSNVGLSNLVTS 132
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLESLN 161
+ L ++ A+T +K A NL KL L RC I G V + G KL+ L
Sbjct: 133 CTGLVEINLSNGVALTDSVIKVLAEAKNLEKLWLSRCKSITDMGIGCVAV-GCKKLKLLC 191
Query: 162 IKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAA 219
+ WC ITD + ++ L+SL +S +T+ + + LQ L L LE C +
Sbjct: 192 LNWCLHITDLGVGLIATKCKELRSLDLSFLPITEKCLPTILQLQHLEELILEECHGIDDE 251
Query: 220 CLDSLS---ALGSLFYLNLNRCQ-LSDDGCEKFSKIGS--LKVLNLGF-NEITDECLVHL 272
L++L SL +LNL+RC +S G IGS L+ LNL + + IT + L
Sbjct: 252 GLEALQRNCKRNSLKFLNLSRCPSISHSGLSSLI-IGSEDLQKLNLSYGSSITTDMAKCL 310
Query: 273 KGLTNLESLNLDSCGIGDEGL-------VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
+ L+S+ LD C + G+ +L L KC ++D + +H
Sbjct: 311 HNFSGLQSIKLDCCSLTTSGVKPLXNWRASLKELSLSKCAGVTDECLSILVQKH----KQ 366
Query: 326 LESINLSFT-GISDGSLRKL-AGLSSLKSLNLDARQITDTGLAALT--SLTGLTHLDLFG 381
L ++++ I+ GS+ + + S L SL +++ + L L LDL
Sbjct: 367 LRKLDITCCRKITYGSINSITSSCSFLVSLKMESCSLVPREAYVLIGQRCPYLEELDLTD 426
Query: 382 ARITDSGAAYLRNFKNLRSLE--ICGGGLTDAGVKHIKDL-SSLTLLNLSQNCNLTDKTL 438
I + G + L L+ IC + D G+ HI + L+L ++ +TD+ +
Sbjct: 427 NEIDNEGLKSISKCSRLSVLKLGICLN-INDDGLCHIASACPKIKELDLYRSTGITDRGI 485
Query: 439 ELISG-LTGLVSLNVS-NSRITSAGLRHLKPLKNLRSLTLESC 479
+G L +N++ N +IT + L L NL++L + C
Sbjct: 486 AATAGGCPALEMINIAYNDKITDSSLISLSKCLNLKALEIRGC 528
>gi|112959536|gb|ABI27295.1| internalin A [Listeria monocytogenes]
gi|112959546|gb|ABI27300.1| internalin A [Listeria monocytogenes]
Length = 734
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 193
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 194 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 247
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 248 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 305
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 306 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 363
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 364 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 29 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNL 81
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 82 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 136
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 137 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 194
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 195 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 245
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 246 -NISPLAGLTALT 257
>gi|51850106|dbj|BAD42394.1| leucine-rich repeat protein [Ralstonia solanacearum]
Length = 462
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 87/299 (29%), Positives = 130/299 (43%), Gaps = 24/299 (8%)
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
+T +GIA L L L L++ GC + A L++ +L LN++R + DDG +
Sbjct: 155 PITSAGIARLLAL-PLERLDVSGCGLDAESARLLASHPTLTVLNISRNAIGDDGAAALAA 213
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
L LN+G N I+D L L L++ IGD G L G L L+ D
Sbjct: 214 NPKLTSLNVGRNGISDAGARALVACAGLTKLDISDNRIGDAGARALAGSAKLNKLDAGDC 273
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
+G G R L+ L ++L + I G LA L SLN+ + G A L +
Sbjct: 274 GIGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLNVCGNALGSAGAALLAA 333
Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
LT LD+ I ++GA L L L + G+ +AG + + ++LT L++ N
Sbjct: 334 SAALTELDIGNNGIGNAGARALGANATLVKLNVANNGIEEAGARALAASTTLTALDIGSN 393
Query: 431 -----------CNLTDKTLELISGLTG------------LVSLNVSNSRITSAGLRHLK 466
N T TL+ + G L +LNV +RI AG+R L+
Sbjct: 394 RIGDAGAQALAANDTLVTLDASANWIGDPGALALADNTRLATLNVGANRIGEAGMRALE 452
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 106/233 (45%), Gaps = 1/233 (0%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
KL SLN+ N I+D+ + L L L IS +++ D+G L G KL L+ C
Sbjct: 216 KLTSLNVG-RNGISDAGARALVACAGLTKLDISDNRIGDAGARALAGSAKLNKLDAGDCG 274
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+ +L+A +L L+L ++ G E + L LN+ N + L
Sbjct: 275 IGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLNVCGNALGSAGAALLAAS 334
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
L L++ + GIG+ G L L L +++ + +G R L+ T L ++++
Sbjct: 335 AALTELDIGNNGIGNAGARALGANATLVKLNVANNGIEEAGARALAASTTLTALDIGSNR 394
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
I D + LA +L +L+ A I D G AL T L L++ RI ++G
Sbjct: 395 IGDAGAQALAANDTLVTLDASANWIGDPGALALADNTRLATLNVGANRIGEAG 447
Score = 42.0 bits (97), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 98/251 (39%), Gaps = 29/251 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L +D+S + + D+G L + L LD C
Sbjct: 239 AGLTKLDISDNRIGDAGARALAGSAKLNKLDAGDC------------------------- 273
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC-NCITDSDMKP 175
I +G +A A L +LDL GG L +L SLN+ C N + +
Sbjct: 274 -GIGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLNV--CGNALGSAGAAL 330
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ L L I + + ++G L L LN+ + A +L+A +L L++
Sbjct: 331 LAASAALTELDIGNNGIGNAGARALGANATLVKLNVANNGIEEAGARALAASTTLTALDI 390
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
++ D G + + +L L+ N I D + L T L +LN+ + IG+ G+
Sbjct: 391 GSNRIGDAGAQALAANDTLVTLDASANWIGDPGALALADNTRLATLNVGANRIGEAGMRA 450
Query: 296 LTGLCNLKCLE 306
L L L+
Sbjct: 451 LEASTTLAVLK 461
>gi|428303964|ref|YP_007140789.1| hypothetical protein Cri9333_0293 [Crinalium epipsammum PCC 9333]
gi|428245499|gb|AFZ11279.1| leucine-rich repeat-containing protein [Crinalium epipsammum PCC
9333]
Length = 409
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 96/298 (32%), Positives = 150/298 (50%), Gaps = 33/298 (11%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++ DS + L+ ++ LD N +I+ LE ++ L NLT L N +
Sbjct: 128 EIPDSKRLTLEVLQGIKVLDANNA-EIT--SLEGIQALRNLTILRLDGNKI---SDVTPL 181
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
AGL NL L L+ H + ++K L L +L++ + N SD+ PL+GL NL+ L++
Sbjct: 182 AGLTNLRNLRLD-----HSQISDVKPLTGLTNLSVLYLNKNQISDVTPLAGLINLRDLRL 236
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF-YLNLNRCQLSD--DG 244
++++D + L G L+NL G + + +S + LF ++NL L+D D
Sbjct: 237 DQNQISD--VTPLAG-----LINLRGLGLDQ---NQISDVKPLFGFVNLTTLYLNDNSDV 286
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
FS + +L VL L N+I+D + L LTNL L LD I D + L L L
Sbjct: 287 TPLFS-LANLTVLTLYDNKISD--VKPLTALTNLTVLELDQNQISD--VKPLASLARLTR 341
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L+D Q+ S + L+GL L S+ LS ISD ++ L GL++L L L I++
Sbjct: 342 LSLNDNQI--SDVEPLAGLAKLTSLRLSQNQISD--VKPLTGLTNLSGLGLSDNPISN 395
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 138/286 (48%), Gaps = 44/286 (15%)
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
+ + +L+G+ L +L I + SD+ PL+GLTNL++L++ S+++D + L GL
Sbjct: 150 NAEITSLEGIQALRNLTILRLDGNKISDVTPLAGLTNLRNLRLDHSQISD--VKPLTGLT 207
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
L S+ YLN N Q+SD + + +L+ L L N+I
Sbjct: 208 NL----------------------SVLYLNKN--QISD--VTPLAGLINLRDLRLDQNQI 241
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
+D + L GL NL L LD I D + L G NL L L+D +S + L L
Sbjct: 242 SD--VTPLAGLINLRGLGLDQNQISD--VKPLFGFVNLTTLYLND----NSDVTPLFSLA 293
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
NL + L ISD ++ L L++L L LD QI+D + L SL LT L L +I
Sbjct: 294 NLTVLTLYDNKISD--VKPLTALTNLTVLELDQNQISD--VKPLASLARLTRLSLNDNQI 349
Query: 385 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
+D L L SL + ++D VK + L++L+ L LS N
Sbjct: 350 SD--VEPLAGLAKLTSLRLSQNQISD--VKPLTGLTNLSGLGLSDN 391
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 96/307 (31%), Positives = 159/307 (51%), Gaps = 26/307 (8%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
KLE+ I+ I DS L L +K L + +++T + ++ L+ LT+L L+G
Sbjct: 118 KLEAA-IRRQVEIPDSKRLTLEVLQGIKVLDANNAEIT--SLEGIQALRNLTILRLDGNK 174
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
++ L+ L +L L L+ Q+SD + + + +L VL L N+I+D + L GL
Sbjct: 175 ISDVT--PLAGLTNLRNLRLDHSQISD--VKPLTGLTNLSVLYLNKNQISD--VTPLAGL 228
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
NL L LD I D + L GL NL+ L L Q+ S ++ L G NL ++ L+
Sbjct: 229 INLRDLRLDQNQISD--VTPLAGLINLRGLGLDQNQI--SDVKPLFGFVNLTTLYLN--- 281
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
+ + L L++L L L +I+D + LT+LT LT L+L +I+D L +
Sbjct: 282 -DNSDVTPLFSLANLTVLTLYDNKISD--VKPLTALTNLTVLELDQNQISD--VKPLASL 336
Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 455
L L + ++D V+ + L+ LT L LSQN ++D ++ ++GLT L L +S++
Sbjct: 337 ARLTRLSLNDNQISD--VEPLAGLAKLTSLRLSQN-QISD--VKPLTGLTNLSGLGLSDN 391
Query: 456 RITSAGL 462
I++ L
Sbjct: 392 PISNCQL 398
>gi|254828935|ref|ZP_05233622.1| internalin A [Listeria monocytogenes FSL N3-165]
gi|130774797|gb|ABO32413.1| InlA [Listeria monocytogenes]
gi|130774811|gb|ABO32418.1| InlA [Listeria monocytogenes]
gi|194239388|emb|CAQ76834.1| internalin A [Listeria monocytogenes]
gi|258601346|gb|EEW14671.1| internalin A [Listeria monocytogenes FSL N3-165]
gi|298360424|gb|ADI77791.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|443316011|ref|ZP_21045475.1| Leucine Rich Repeat (LRR)-containing protein [Leptolyngbya sp. PCC
6406]
gi|442784393|gb|ELR94269.1| Leucine Rich Repeat (LRR)-containing protein [Leptolyngbya sp. PCC
6406]
Length = 437
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 108/339 (31%), Positives = 168/339 (49%), Gaps = 47/339 (13%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D++PLS LTNL SL +S ++++D I L L KL L LE +T + SL L +L
Sbjct: 94 DVRPLSTLTNLTSLVLSGNQISD--IQPLASLTKLESLFLESNQITN--IQSLGGLHNLT 149
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-----------------LVHLKG 274
+L+L+ Q+ D + S + L+ L L N+I D +V +
Sbjct: 150 WLSLSGNQVVD--VQPLSNLTGLEWLFLDDNQIVDVAPLATLQNLERLLLSYNQIVEIGA 207
Query: 275 LTNLESL-NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
L+ LE L NL G E + L+GL NL LEL + QV ++ L+ L NL + L
Sbjct: 208 LSALEKLQNLYLNGNQIEDVQPLSGLRNLAWLELKENQV--MNIQPLADLENLRWLGLDD 265
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
I D ++ LA LS+LK+L L+ QITD +++L +LT L L L +I D + L
Sbjct: 266 NQIVD--VQPLAALSTLKNLYLNGNQITD--VSSLAALTNLESLVLGDNQIVDIQSLSL- 320
Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV- 452
+NL L + G I ++S L+ L + L D ++ + L L +L+V
Sbjct: 321 -LENLTFLVLSG--------NQIVNVSPLSALVRLERLGLNDNQIQDVQPLATLTNLSVL 371
Query: 453 --SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
SN++I + L L+N+ L+L+ ++ DI+ L
Sbjct: 372 VLSNNQIVD--VEPLAALENVGLLSLDHNQIV--DIQPL 406
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 104/338 (30%), Positives = 165/338 (48%), Gaps = 39/338 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L S+ LSG+ ++D + L + L+SL F QI++ ++ L GL NLT LS N
Sbjct: 102 TNLTSLVLSGNQISD--IQPLASLTKLESL-FLESNQITN--IQSLGGLHNLTWLSLSGN 156
Query: 117 NAITAQGMKAFAGL----------INLVKL----DLERCTRIHGGLVNLKGLMKLESLNI 162
+ Q + GL +++ L +LER + +V + L LE L
Sbjct: 157 QVVDVQPLSNLTGLEWLFLDDNQIVDVAPLATLQNLERLLLSYNQIVEIGALSALEKLQN 216
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
+ N D++PLSGL NL L++ ++V + I L L+ L L L+ + +
Sbjct: 217 LYLNGNQIEDVQPLSGLRNLAWLELKENQVMN--IQPLADLENLRWLGLDDNQIVD--VQ 272
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
L+AL +L L LN Q++D + + +L+ L LG N+I D ++ L+ LE N
Sbjct: 273 PLAALSTLKNLYLNGNQITD--VSSLAALTNLESLVLGDNQIVD-----IQSLSLLE--N 323
Query: 283 LDSCGIGDEGLVN---LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L + +VN L+ L L+ L L+D Q+ ++ L+ LTNL + LS I D
Sbjct: 324 LTFLVLSGNQIVNVSPLSALVRLERLGLNDNQI--QDVQPLATLTNLSVLVLSNNQIVD- 380
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
+ LA L ++ L+LD QI D + S GL HL
Sbjct: 381 -VEPLAALENVGLLSLDHNQIVDIQPLSQLSRLGLLHL 417
>gi|290996873|ref|XP_002681006.1| predicted protein [Naegleria gruberi]
gi|284094629|gb|EFC48262.1| predicted protein [Naegleria gruberi]
Length = 207
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 103/201 (51%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+++LT LN+ G + +S + L L+++R ++ +G + S++ L LN+ +N
Sbjct: 1 MKQLTSLNIGGNEIGVEGAKYMSEMKHLTSLDIHRNEIGVEGSKFISEMKHLTSLNIYYN 60
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
EI E ++ + +L SLN+ IG EG ++ + L L ++D ++G G + +S
Sbjct: 61 EIGVEGSKYISEMKHLTSLNIGDNEIGVEGSKYISEMKQLTSLNIADNEIGVEGSKFISE 120
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
+ +L S+ + + I + ++ + L SLN+ QI D G ++ + LT L++
Sbjct: 121 MKHLTSLYIYYNEIGVEGAKFISEMKHLTSLNISGNQIGDEGSKFISEMKSLTSLNIGDN 180
Query: 383 RITDSGAAYLRNFKNLRSLEI 403
I GA ++ K L SL I
Sbjct: 181 EIGVEGAKFISGMKQLTSLNI 201
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 106/205 (51%), Gaps = 1/205 (0%)
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
L LN+G NEI E ++ + +L SL++ IG EG ++ + +L L + ++G
Sbjct: 4 LTSLNIGGNEIGVEGAKYMSEMKHLTSLDIHRNEIGVEGSKFISEMKHLTSLNIYYNEIG 63
Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
G +++S + +L S+N+ I + ++ + L SLN+ +I G ++ +
Sbjct: 64 VEGSKYISEMKHLTSLNIGDNEIGVEGSKYISEMKQLTSLNIADNEIGVEGSKFISEMKH 123
Query: 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
LT L ++ I GA ++ K+L SL I G + D G K I ++ SLT LN+ N +
Sbjct: 124 LTSLYIYYNEIGVEGAKFISEMKHLTSLNISGNQIGDEGSKFISEMKSLTSLNIGDN-EI 182
Query: 434 TDKTLELISGLTGLVSLNVSNSRIT 458
+ + ISG+ L SLN+ ++ +
Sbjct: 183 GVEGAKFISGMKQLTSLNIDDNELV 207
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 103/203 (50%), Gaps = 1/203 (0%)
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
+ L SLN+ IG EG ++ + +L L++ ++G G + +S + +L S+N+ +
Sbjct: 1 MKQLTSLNIGGNEIGVEGAKYMSEMKHLTSLDIHRNEIGVEGSKFISEMKHLTSLNIYYN 60
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
I + ++ + L SLN+ +I G ++ + LT L++ I G+ ++
Sbjct: 61 EIGVEGSKYISEMKHLTSLNIGDNEIGVEGSKYISEMKQLTSLNIADNEIGVEGSKFISE 120
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
K+L SL I + G K I ++ LT LN+S N + D+ + IS + L SLN+ +
Sbjct: 121 MKHLTSLYIYYNEIGVEGAKFISEMKHLTSLNISGN-QIGDEGSKFISEMKSLTSLNIGD 179
Query: 455 SRITSAGLRHLKPLKNLRSLTLE 477
+ I G + + +K L SL ++
Sbjct: 180 NEIGVEGAKFISGMKQLTSLNID 202
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 100/201 (49%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L SL I +++ G Y+ ++ LT L++ + +S + L LN+
Sbjct: 1 MKQLTSLNIGGNEIGVEGAKYMSEMKHLTSLDIHRNEIGVEGSKFISEMKHLTSLNIYYN 60
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
++ +G + S++ L LN+G NEI E ++ + L SLN+ IG EG ++
Sbjct: 61 EIGVEGSKYISEMKHLTSLNIGDNEIGVEGSKYISEMKQLTSLNIADNEIGVEGSKFISE 120
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
+ +L L + ++G G + +S + +L S+N+S I D + ++ + SL SLN+
Sbjct: 121 MKHLTSLYIYYNEIGVEGAKFISEMKHLTSLNISGNQIGDEGSKFISEMKSLTSLNIGDN 180
Query: 359 QITDTGLAALTSLTGLTHLDL 379
+I G ++ + LT L++
Sbjct: 181 EIGVEGAKFISGMKQLTSLNI 201
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 102/227 (44%), Gaps = 26/227 (11%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
+ LTSL+ N I +G K + + +L LD+ R
Sbjct: 1 MKQLTSLNIG-GNEIGVEGAKYMSEMKHLTSLDIHR------------------------ 35
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N I K +S + +L SL I +++ G Y+ ++ LT LN+ + +
Sbjct: 36 -NEIGVEGSKFISEMKHLTSLNIYYNEIGVEGSKYISEMKHLTSLNIGDNEIGVEGSKYI 94
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
S + L LN+ ++ +G + S++ L L + +NEI E + + +L SLN+
Sbjct: 95 SEMKQLTSLNIADNEIGVEGSKFISEMKHLTSLYIYYNEIGVEGAKFISEMKHLTSLNIS 154
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
IGDEG ++ + +L L + D ++G G + +SG+ L S+N+
Sbjct: 155 GNQIGDEGSKFISEMKSLTSLNIGDNEIGVEGAKFISGMKQLTSLNI 201
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 102/208 (49%), Gaps = 1/208 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SLNI N I K +S + +L SL I +++ G ++ ++ LT LN+
Sbjct: 1 MKQLTSLNI-GGNEIGVEGAKYMSEMKHLTSLDIHRNEIGVEGSKFISEMKHLTSLNIYY 59
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ +S + L LN+ ++ +G + S++ L LN+ NEI E +
Sbjct: 60 NEIGVEGSKYISEMKHLTSLNIGDNEIGVEGSKYISEMKQLTSLNIADNEIGVEGSKFIS 119
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
+ +L SL + IG EG ++ + +L L +S Q+G G + +S + +L S+N+
Sbjct: 120 EMKHLTSLYIYYNEIGVEGAKFISEMKHLTSLNISGNQIGDEGSKFISEMKSLTSLNIGD 179
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQIT 361
I + ++G+ L SLN+D ++
Sbjct: 180 NEIGVEGAKFISGMKQLTSLNIDDNELV 207
>gi|157865947|ref|XP_001681680.1| putative surface antigen protein [Leishmania major strain Friedlin]
gi|68124978|emb|CAJ02759.1| putative surface antigen protein [Leishmania major strain Friedlin]
Length = 610
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 159/343 (46%), Gaps = 2/343 (0%)
Query: 143 RIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
++ G L + + LESL+I+ C I+ + S + +L L + +KV+ S
Sbjct: 143 KVSGTLPASWHSMTSLESLSIEKCESISGALPPQWSSMKSLSFLNLDGAKVSGSLPPQWS 202
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
++ L L+L V+ + S++ L +LNL+ ++S ++S + L VL++
Sbjct: 203 SMKSLRTLDLGDTQVSGSLPPQWSSMTLLSFLNLDGAKVSGALPPQWSSMTLLAVLDVQG 262
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
+++ + +L LNL I + + +L L++ TQV + S
Sbjct: 263 TQVSGTLPPQWSSMKSLSVLNLRGTSISGSVPPQWSSMTSLAVLDVQGTQVSGTLPPQWS 322
Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
+T+L S+++ T +S + + ++SL +LNL Q++ T +S+T LT LD+ G
Sbjct: 323 LMTSLTSLDVQGTQVSGSVPPQWSSMTSLTALNLRGTQVSGTLPPQWSSMTSLTSLDVQG 382
Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
+++ + + +L +L++ G ++ + LT L L+ E
Sbjct: 383 TQVSGTLPPQWSSMTSLAALDVQGTQVSGTLPPQWSSMRRLTHLLLTDTLLSGTLPAEW- 441
Query: 442 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 484
S L LV+L +S+S+++ + +SL L+ C ++ +
Sbjct: 442 SALQSLVTLQLSSSKVSGTLPPQWSGMSKAQSLQLQDCDLSGS 484
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 125/281 (44%), Gaps = 26/281 (9%)
Query: 203 LQKLTLLNL------------------------EGCP-VTAACLDSLSALGSLFYLNLNR 237
L+KLT L L E C ++ A S++ SL +LNL+
Sbjct: 131 LEKLTFLTLLGNKVSGTLPASWHSMTSLESLSIEKCESISGALPPQWSSMKSLSFLNLDG 190
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
++S ++S + SL+ L+LG +++ +T L LNLD + +
Sbjct: 191 AKVSGSLPPQWSSMKSLRTLDLGDTQVSGSLPPQWSSMTLLSFLNLDGAKVSGALPPQWS 250
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
+ L L++ TQV + S + +L +NL T IS + + ++SL L++
Sbjct: 251 SMTLLAVLDVQGTQVSGTLPPQWSSMKSLSVLNLRGTSISGSVPPQWSSMTSLAVLDVQG 310
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
Q++ T + +T LT LD+ G +++ S + +L +L + G ++
Sbjct: 311 TQVSGTLPPQWSLMTSLTSLDVQGTQVSGSVPPQWSSMTSLTALNLRGTQVSGTLPPQWS 370
Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
++SLT L++ Q ++ S +T L +L+V ++++
Sbjct: 371 SMTSLTSLDV-QGTQVSGTLPPQWSSMTSLAALDVQGTQVS 410
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 112/238 (47%), Gaps = 2/238 (0%)
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKC 304
+ +SK+ L L L N+++ +T+LESL+++ C I + + +L
Sbjct: 126 DSWSKLEKLTFLTLLGNKVSGTLPASWHSMTSLESLSIEKCESISGALPPQWSSMKSLSF 185
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
L L +V S S + +L +++L T +S + + ++ L LNLD +++
Sbjct: 186 LNLDGAKVSGSLPPQWSSMKSLRTLDLGDTQVSGSLPPQWSSMTLLSFLNLDGAKVSGAL 245
Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424
+S+T L LD+ G +++ + + K+L L + G ++ + ++SL +
Sbjct: 246 PPQWSSMTLLAVLDVQGTQVSGTLPPQWSSMKSLSVLNLRGTSISGSVPPQWSSMTSLAV 305
Query: 425 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
L++ Q ++ S +T L SL+V ++++ + + +L +L L +V+
Sbjct: 306 LDV-QGTQVSGTLPPQWSLMTSLTSLDVQGTQVSGSVPPQWSSMTSLTALNLRGTQVS 362
Score = 45.4 bits (106), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 142/311 (45%), Gaps = 12/311 (3%)
Query: 51 VIASQGSSLLSV---DLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSN 107
+ Q SS+ S+ +L G+ V+ S +L++LD Q+S G L S+
Sbjct: 172 ALPPQWSSMKSLSFLNLDGAKVSGSLPPQWSSMKSLRTLDLGD-TQVS-GSLPP--QWSS 227
Query: 108 LTSLSFRRNNAITAQGM--KAFAGLINLVKLDLERCTRIHGGLVNLKGLMK-LESLNIKW 164
+T LSF + G ++ + L LD++ T++ G L MK L LN++
Sbjct: 228 MTLLSFLNLDGAKVSGALPPQWSSMTLLAVLDVQG-TQVSGTLPPQWSSMKSLSVLNLR- 285
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
I+ S S +T+L L + ++V+ + + LT L+++G V+ +
Sbjct: 286 GTSISGSVPPQWSSMTSLAVLDVQGTQVSGTLPPQWSLMTSLTSLDVQGTQVSGSVPPQW 345
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
S++ SL LNL Q+S ++S + SL L++ +++ +T+L +L++
Sbjct: 346 SSMTSLTALNLRGTQVSGTLPPQWSSMTSLTSLDVQGTQVSGTLPPQWSSMTSLAALDVQ 405
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
+ + + L L L+DT + + S L +L ++ LS + +S +
Sbjct: 406 GTQVSGTLPPQWSSMRRLTHLLLTDTLLSGTLPAEWSALQSLVTLQLSSSKVSGTLPPQW 465
Query: 345 AGLSSLKSLNL 355
+G+S +SL L
Sbjct: 466 SGMSKAQSLQL 476
>gi|219821255|gb|ACL37748.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKV 368
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 87
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|71650734|ref|XP_814059.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70878999|gb|EAN92208.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 934
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 124/487 (25%), Positives = 218/487 (44%), Gaps = 65/487 (13%)
Query: 31 CALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNF 90
CAL+DL L Y V ++ M S+ + L + L G +S L L+ + L+ LD +
Sbjct: 371 CALRDLDLS-YTQVTEEGMYRDVSKLNKLSRLSLEGCRKIES-LQWLRALNQLRVLDLGY 428
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI--NLVKLDLERCTRIHGGL 148
++D L LR L L + IT+ +K G + +L +L+L + GL
Sbjct: 429 S-SVTDDSLTALRFCPELAKLDLQWCGRITS--LKCLVGALCDSLRELNLTETSVTDEGL 485
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
V LK LE ++++ C ++D ++ L LT L+ + + ++VT+ G+ L Q L +
Sbjct: 486 VPLKYFAALEWISLEGCGAVSDVNV--LCNLTRLREVDVGRTRVTNRGVVSLSQCQALRV 543
Query: 209 LNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITD 266
+ + C +T A L AL L ++L+ C ++++G + SL+ L L + ++D
Sbjct: 544 MRMRQCYRLTDASF--LGALQQLEEVDLSDCPVTNEGIAELFGARSLRKLRLQSCHAVSD 601
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG-------------------------LCN 301
+ L GL +L L+L + +EG V L L
Sbjct: 602 --VNFLGGLEHLMLLDLHHTTVDEEGSVGLAQCPQLMTLIMHSVLVHSLQQWNTALFLPR 659
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINL----SFTGISDGSLRKLAGLSSLKSLNLDA 357
LK L+LS T+V S L + LE+++L + T + L+ +G + DA
Sbjct: 660 LKRLDLSTTKVTSDALSFVRMCPILETLSLRGCKNITHLDFLILQPSSGAGVCAIVPRDA 719
Query: 358 -------------RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
+ D G + + ++T + I + AA + + LR L +
Sbjct: 720 EPHDTVGDTIAGKEKNPDDGPSPIETMT------INDGVIKSTAAAAVVDRHRLRELTLS 773
Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
G+TD G++ ++ L L L+ N+TD + ++ L+ L L++S + +T +GL
Sbjct: 774 DTGVTDDGLRALQYCPGLERLRLAHCKNVTD--VAVLRWLSQLKELDLSATGVTGSGLAK 831
Query: 465 LKPLKNL 471
L P NL
Sbjct: 832 LSPSGNL 838
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 86/327 (26%), Positives = 153/327 (46%), Gaps = 42/327 (12%)
Query: 179 LTNLKSLQISCSKVTDSGIAY-LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L L+ L +S ++VT+ G+ + L KL+ L+LEGC + SL +L
Sbjct: 370 LCALRDLDLSYTQVTEEGMYRDVSKLNKLSRLSLEGC----------RKIESLQWLR--- 416
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+ L+VL+LG++ +TD+ L L+ L L+L CG +
Sbjct: 417 ------------ALNQLRVLDLGYSSVTDDSLTALRFCPELAKLDLQWCGRITSLKCLVG 464
Query: 298 GLCN-LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL 355
LC+ L+ L L++T V GL L LE I+L G +SD ++ L L+ L+ +++
Sbjct: 465 ALCDSLRELNLTETSVTDEGLVPLKYFAALEWISLEGCGAVSDVNV--LCNLTRLREVDV 522
Query: 356 DARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
++T+ G+ +L+ L + + R+TD A++L + L +++ +T+ G+
Sbjct: 523 GRTRVTNRGVVSLSQCQALRVMRMRQCYRLTD--ASFLGALQQLEEVDLSDCPVTNEGIA 580
Query: 415 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
+ SL L L Q+C+ + + GL L+ L++ ++ + G L L +L
Sbjct: 581 ELFGARSLRKLRL-QSCHAVSD-VNFLGGLEHLMLLDLHHTTVDEEGSVGLAQCPQLMTL 638
Query: 475 TLESCKV-------TANDIKRLQSRDL 494
+ S V TA + RL+ DL
Sbjct: 639 IMHSVLVHSLQQWNTALFLPRLKRLDL 665
>gi|158429248|pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 67 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 120
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 121 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 172
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 173 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 225
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 226 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 279
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 280 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 337
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 338 ANNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 395
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 396 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 428
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 61 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 113
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 114 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 168
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 169 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 226
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 227 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 277
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 278 -NISPLAGLTALT 289
>gi|294358393|gb|ADE73849.1| InlA [Listeria monocytogenes]
Length = 800
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL + G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKEIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 121/252 (48%), Gaps = 42/252 (16%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
L L +LT L LD+ +++D + L NL SL ++D + + L++L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 423 TLLNLSQN-----------CNLTD--------KTLELISGLTGLVSLNVSNSRITSAGLR 463
L+L+ N NLTD L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKEIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS----- 308
Query: 464 HLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 NISPLAGLTALT 320
>gi|27574254|pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
gi|27574256|pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
gi|27574257|pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
gi|27574258|pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 68 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 121
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 122 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 173
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 174 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 226
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 227 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 280
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 281 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 338
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 339 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 396
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 397 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 429
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 62 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 114
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 115 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 169
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 170 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 227
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 228 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 278
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 279 -NISPLAGLTALT 290
>gi|223698748|gb|ACN19072.1| truncated internalin A [Listeria monocytogenes]
gi|223698961|gb|ACN19214.1| truncated internalin A [Listeria monocytogenes]
Length = 491
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 341
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 342 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 122/255 (47%), Gaps = 44/255 (17%)
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
S DG E + +L +N N++TD + LK LT L + +++ I D + L L
Sbjct: 5 SIDGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLT 57
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
NL L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+
Sbjct: 58 NLTGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQV 112
Query: 361 TDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRS 400
TD L L +LT L LD+ +++D S A L N + NL
Sbjct: 113 TD--LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDE 170
Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 171 LSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-- 223
Query: 461 GLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 224 ---NISPLAGLTALT 235
>gi|290971663|ref|XP_002668605.1| predicted protein [Naegleria gruberi]
gi|284082078|gb|EFC35861.1| predicted protein [Naegleria gruberi]
Length = 968
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 93/189 (49%), Gaps = 1/189 (0%)
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
IG EG +++ + L L++ + Q+G G + +S + L S+ +S I D ++ + +
Sbjct: 773 IGVEGAKSISEMKQLTSLDIGENQIGDEGAKSISEMKQLTSLTISGNSIGDEGVKSIRKM 832
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
L S N+ + G ++ + LT LD+ I D GA + K L SL I G
Sbjct: 833 KQLTSFNISYNETGVAGAKFISEMKQLTSLDISYNEIGDEGAKSISELKQLTSLTISGNS 892
Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 467
+ G K I ++ LTLL++ +N + D+ + IS L L SL +S ++I G + +
Sbjct: 893 IGVEGAKSISEMKQLTLLDIGEN-QIGDEGAKSISELKQLKSLTISENQIGDEGAKFIIG 951
Query: 468 LKNLRSLTL 476
+K S L
Sbjct: 952 MKQYGSFKL 960
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 87/174 (50%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
+G + S++ L L++G N+I DE + + L SL + IGDEG+ ++ + L
Sbjct: 776 EGAKSISEMKQLTSLDIGENQIGDEGAKSISEMKQLTSLTISGNSIGDEGVKSIRKMKQL 835
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
+S + G +G + +S + L S+++S+ I D + ++ L L SL + I
Sbjct: 836 TSFNISYNETGVAGAKFISEMKQLTSLDISYNEIGDEGAKSISELKQLTSLTISGNSIGV 895
Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
G +++ + LT LD+ +I D GA + K L+SL I + D G K I
Sbjct: 896 EGAKSISEMKQLTLLDIGENQIGDEGAKSISELKQLKSLTISENQIGDEGAKFI 949
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 101/205 (49%), Gaps = 2/205 (0%)
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
F+ LI+ K ++E + G ++ + +L SL+I N I D K +S + L SL
Sbjct: 758 FSKLISEEKEEMEHSIGVEGA-KSISEMKQLTSLDIG-ENQIGDEGAKSISEMKQLTSLT 815
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
IS + + D G+ ++ +++LT N+ A +S + L L+++ ++ D+G +
Sbjct: 816 ISGNSIGDEGVKSIRKMKQLTSFNISYNETGVAGAKFISEMKQLTSLDISYNEIGDEGAK 875
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
S++ L L + N I E + + L L++ IGDEG +++ L LK L
Sbjct: 876 SISELKQLTSLTISGNSIGVEGAKSISEMKQLTLLDIGENQIGDEGAKSISELKQLKSLT 935
Query: 307 LSDTQVGSSGLRHLSGLTNLESINL 331
+S+ Q+G G + + G+ S L
Sbjct: 936 ISENQIGDEGAKFIIGMKQYGSFKL 960
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 1/170 (0%)
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
+ L SL++ IGDEG +++ + L L +S +G G++ + + L S N+S+
Sbjct: 784 MKQLTSLDIGENQIGDEGAKSISEMKQLTSLTISGNSIGDEGVKSIRKMKQLTSFNISYN 843
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
+ ++ + L SL++ +I D G +++ L LT L + G I GA +
Sbjct: 844 ETGVAGAKFISEMKQLTSLDISYNEIGDEGAKSISELKQLTSLTISGNSIGVEGAKSISE 903
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 444
K L L+I + D G K I +L L L +S+N + D+ + I G+
Sbjct: 904 MKQLTLLDIGENQIGDEGAKSISELKQLKSLTISEN-QIGDEGAKFIIGM 952
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 86/176 (48%), Gaps = 1/176 (0%)
Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
E + +G G + +S + L S+++ I D + ++ + L SL + I D G+
Sbjct: 767 EEMEHSIGVEGAKSISEMKQLTSLDIGENQIGDEGAKSISEMKQLTSLTISGNSIGDEGV 826
Query: 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
++ + LT ++ +GA ++ K L SL+I + D G K I +L LT L
Sbjct: 827 KSIRKMKQLTSFNISYNETGVAGAKFISEMKQLTSLDISYNEIGDEGAKSISELKQLTSL 886
Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
+S N ++ + + IS + L L++ ++I G + + LK L+SLT+ ++
Sbjct: 887 TISGN-SIGVEGAKSISEMKQLTLLDIGENQIGDEGAKSISELKQLKSLTISENQI 941
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 24/191 (12%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL I +++ D G + +++LT L + G + + S+ + L
Sbjct: 779 KSISEMKQLTSLDIGENQIGDEGAKSISEMKQLTSLTISGNSIGDEGVKSIRKMKQLTSF 838
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
N++ + G + S++ L L++ +NEI DE + L L SL + IG EG
Sbjct: 839 NISYNETGVAGAKFISEMKQLTSLDISYNEIGDEGAKSISELKQLTSLTISGNSIGVEGA 898
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
+++ + L L++ + Q+G G + +S L LKSL
Sbjct: 899 KSISEMKQLTLLDIGENQIGDEGAKSISEL------------------------KQLKSL 934
Query: 354 NLDARQITDTG 364
+ QI D G
Sbjct: 935 TISENQIGDEG 945
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 8/163 (4%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+ +SG+ + D G+ ++ L S + ++ + G + + + LTSL
Sbjct: 806 SEMKQLTSLTISGNSIGDEGVKSIRKMKQLTSFNISYN-ETGVAGAKFISEMKQLTSLDI 864
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K+ + L L L + + G ++ + +L L+I N I D
Sbjct: 865 SYNE-IGDEGAKSISELKQLTSLTISGNSIGVEGAKSISEMKQLTLLDIG-ENQIGDEGA 922
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ-----KLTLLNL 211
K +S L LKSL IS +++ D G ++ G++ KL L+NL
Sbjct: 923 KSISELKQLKSLTISENQIGDEGAKFIIGMKQYGSFKLRLVNL 965
>gi|219821354|gb|ACL37814.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
+ GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPIAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 368
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 130/273 (47%), Gaps = 37/273 (13%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 87
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 140
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I++
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 251
Query: 460 ----AG-------------LRHLKPLKNLRSLT 475
AG L + P+ NL++LT
Sbjct: 252 ISPIAGLTALTNLELNENQLEDISPISNLKNLT 284
>gi|290986246|ref|XP_002675835.1| predicted protein [Naegleria gruberi]
gi|284089434|gb|EFC43091.1| predicted protein [Naegleria gruberi]
Length = 820
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 100/198 (50%), Gaps = 2/198 (1%)
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L LN+C S++ K+ L +L+ +N I DE + + L SL++ IG EG
Sbjct: 606 LTLNKCP-SNELINFLKKMKQLTLLDFIYN-IGDEGAKLISEMKQLTSLDISENNIGVEG 663
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
++ + L L + ++G G++++S + L S+++S+ I + ++ + L S
Sbjct: 664 AKYISEMKQLTSLNICRNEIGVEGVKYISEMKQLTSLDISYNKIGVEGAKYISEMKQLTS 723
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
L++ I G ++ + LT LD+ +I D GA Y+ K L SL I + G
Sbjct: 724 LDISENNIGVEGAKYISEMKQLTSLDINYNKIGDEGAKYISKMKQLTSLNIRRNEIGVEG 783
Query: 413 VKHIKDLSSLTLLNLSQN 430
VK+I ++ LT L++S N
Sbjct: 784 VKYISEMKQLTSLDISYN 801
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 105/206 (50%), Gaps = 13/206 (6%)
Query: 197 IAYLKGLQKLTLLNL------EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
I +LK +++LTLL+ EG + +S + L L+++ + +G + S+
Sbjct: 617 INFLKKMKQLTLLDFIYNIGDEGAKL-------ISEMKQLTSLDISENNIGVEGAKYISE 669
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+ L LN+ NEI E + ++ + L SL++ IG EG ++ + L L++S+
Sbjct: 670 MKQLTSLNICRNEIGVEGVKYISEMKQLTSLDISYNKIGVEGAKYISEMKQLTSLDISEN 729
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
+G G +++S + L S+++++ I D + ++ + L SLN+ +I G+ ++
Sbjct: 730 NIGVEGAKYISEMKQLTSLDINYNKIGDEGAKYISKMKQLTSLNIRRNEIGVEGVKYISE 789
Query: 371 LTGLTHLDLFGARITDSGAAYLRNFK 396
+ LT LD+ +I GA YL K
Sbjct: 790 MKQLTSLDISYNKIGVEGAKYLSEMK 815
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 106/217 (48%), Gaps = 2/217 (0%)
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L L CP + ++ L + L L+ + D+G + S++ L L++ N I E
Sbjct: 606 LTLNKCP-SNELINFLKKMKQLTLLDF-IYNIGDEGAKLISEMKQLTSLDISENNIGVEG 663
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
++ + L SLN+ IG EG+ ++ + L L++S ++G G +++S + L S
Sbjct: 664 AKYISEMKQLTSLNICRNEIGVEGVKYISEMKQLTSLDISYNKIGVEGAKYISEMKQLTS 723
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
+++S I + ++ + L SL+++ +I D G ++ + LT L++ I G
Sbjct: 724 LDISENNIGVEGAKYISEMKQLTSLDINYNKIGDEGAKYISKMKQLTSLNIRRNEIGVEG 783
Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
Y+ K L SL+I + G K++ ++ + T+
Sbjct: 784 VKYISEMKQLTSLDISYNKIGVEGAKYLSEMKTKTIY 820
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 100/201 (49%), Gaps = 3/201 (1%)
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
L L +C L+N MK +L + + I D K +S + L SL IS + +
Sbjct: 606 LTLNKCP--SNELINFLKKMKQLTL-LDFIYNIGDEGAKLISEMKQLTSLDISENNIGVE 662
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G Y+ +++LT LN+ + + +S + L L+++ ++ +G + S++ L
Sbjct: 663 GAKYISEMKQLTSLNICRNEIGVEGVKYISEMKQLTSLDISYNKIGVEGAKYISEMKQLT 722
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
L++ N I E ++ + L SL+++ IGDEG ++ + L L + ++G
Sbjct: 723 SLDISENNIGVEGAKYISEMKQLTSLDINYNKIGDEGAKYISKMKQLTSLNIRRNEIGVE 782
Query: 316 GLRHLSGLTNLESINLSFTGI 336
G++++S + L S+++S+ I
Sbjct: 783 GVKYISEMKQLTSLDISYNKI 803
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 90/184 (48%)
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
+ D G + +++LT L++ + +S + L LN+ R ++ +G + S++
Sbjct: 635 IGDEGAKLISEMKQLTSLDISENNIGVEGAKYISEMKQLTSLNICRNEIGVEGVKYISEM 694
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
L L++ +N+I E ++ + L SL++ IG EG ++ + L L+++ +
Sbjct: 695 KQLTSLDISYNKIGVEGAKYISEMKQLTSLDISENNIGVEGAKYISEMKQLTSLDINYNK 754
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
+G G +++S + L S+N+ I ++ ++ + L SL++ +I G L+ +
Sbjct: 755 IGDEGAKYISKMKQLTSLNIRRNEIGVEGVKYISEMKQLTSLDISYNKIGVEGAKYLSEM 814
Query: 372 TGLT 375
T
Sbjct: 815 KTKT 818
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 98/223 (43%), Gaps = 28/223 (12%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
LK L LDF + I D G + + + LTSL NN I +G K + + L L
Sbjct: 620 LKKMKQLTLLDFIY--NIGDEGAKLISEMKQLTSLDISENN-IGVEGAKYISEMKQLTSL 676
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
++ R N I +K +S + L SL IS +K+ G
Sbjct: 677 NICR-------------------------NEIGVEGVKYISEMKQLTSLDISYNKIGVEG 711
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
Y+ +++LT L++ + +S + L L++N ++ D+G + SK+ L
Sbjct: 712 AKYISEMKQLTSLDISENNIGVEGAKYISEMKQLTSLDINYNKIGDEGAKYISKMKQLTS 771
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
LN+ NEI E + ++ + L SL++ IG EG L+ +
Sbjct: 772 LNIRRNEIGVEGVKYISEMKQLTSLDISYNKIGVEGAKYLSEM 814
Score = 45.4 bits (106), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D+S +++ G ++ + L SLD N+ +I D G +++ + LTSL+
Sbjct: 716 SEMKQLTSLDISENNIGVEGAKYISEMKQLTSLDINYN-KIGDEGAKYISKMKQLTSLNI 774
Query: 114 RRNNAITAQGMKAFAGLINLVKLDL 138
RR N I +G+K + + L LD+
Sbjct: 775 RR-NEIGVEGVKYISEMKQLTSLDI 798
>gi|384252153|gb|EIE25630.1| hypothetical protein COCSUDRAFT_83637 [Coccomyxa subellipsoidea
C-169]
Length = 433
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 100/379 (26%), Positives = 186/379 (49%), Gaps = 25/379 (6%)
Query: 32 ALQ-DLCLGQ-YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFN 89
ALQ +CL + +P + +MD +G V+++ VT++G + L++L
Sbjct: 56 ALQHPVCLAERFPELQALFMD--GCEG-----VNMTNEQVTEAGRLRY-----LKTLSLA 103
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGL 148
C +D GL L + L LS + NA+T++ + +L+ LDL +C + +
Sbjct: 104 GCRACTDKGLAGLAVIEGLQKLSLSKCNALTSRTLDLLQTSSSLISLDLGQCAWVDDSSM 163
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLT 207
L L+ L++ C +T+ ++ ++ L +++L +S ++ D+G+ L + L
Sbjct: 164 ALLCNSASLKQLSLADCVRLTNRGVQSVAKLKCIEALNLSGLREIDDAGVEALAAVTSLR 223
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEIT 265
LNL+ C +L+ LG L L++ C ++DD S + SL+ L L ++IT
Sbjct: 224 ELNLDRCGQVRGL--TLAKLGGLHKLSMCDCPCIADDSLGCLSGVTSLEDLKLDMCDKIT 281
Query: 266 DECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSD-TQVGSSGLRHLS-G 322
D+ L ++ LE L+L C D E + L+ L L+ L LS + + GL HL+ G
Sbjct: 282 DKGAGALASMSALEDLDLHRCERLDCEAMRRLSALGQLRSLRLSGCVYIKAEGLGHLARG 341
Query: 323 LTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLF 380
L ++L+ GI D ++ LA + L++LN++ + ++D G A L + + + +
Sbjct: 342 CPLLSRLDLAGCVGIKDEGMQALAEMQHLQALNINQCKYVSDAGAAVLATSVSIRDVFVL 401
Query: 381 GARITDSGAAYLRNFKNLR 399
I+ G L++ L+
Sbjct: 402 TTNISQHGLQLLQDALGLQ 420
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 100/366 (27%), Positives = 167/366 (45%), Gaps = 45/366 (12%)
Query: 156 KLESLNIKWCNCI--TDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLE 212
+L++L + C + T+ + L LK+L ++ C TD G+A L ++ L L+L
Sbjct: 69 ELQALFMDGCEGVNMTNEQVTEAGRLRYLKTLSLAGCRACTDKGLAGLAVIEGLQKLSLS 128
Query: 213 GC-PVTAACLDSLSALGSLFYLNLNRCQLSDD--------------------------GC 245
C +T+ LD L SL L+L +C DD G
Sbjct: 129 KCNALTSRTLDLLQTSSSLISLDLGQCAWVDDSSMALLCNSASLKQLSLADCVRLTNRGV 188
Query: 246 EKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLK 303
+ +K+ ++ LNL G EI D + L +T+L LNLD CG + L L GL L
Sbjct: 189 QSVAKLKCIEALNLSGLREIDDAGVEALAAVTSLRELNLDRCGQVRGLTLAKLGGLHKLS 248
Query: 304 ---CLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQ 359
C ++D +G LSG+T+LE + L I+D LA +S+L+ L+L +
Sbjct: 249 MCDCPCIADDSLGC-----LSGVTSLEDLKLDMCDKITDKGAGALASMSALEDLDLHRCE 303
Query: 360 ITD-TGLAALTSLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICGG-GLTDAGVKH 415
D + L++L L L L G I G +L R L L++ G G+ D G++
Sbjct: 304 RLDCEAMRRLSALGQLRSLRLSGCVYIKAEGLGHLARGCPLLSRLDLAGCVGIKDEGMQA 363
Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
+ ++ L LN++Q ++D +++ + + V + I+ GL+ L+ L+ T
Sbjct: 364 LAEMQHLQALNINQCKYVSDAGAAVLATSVSIRDVFVLTTNISQHGLQLLQDALGLQPTT 423
Query: 476 LESCKV 481
+ C +
Sbjct: 424 MSPCHL 429
>gi|17546519|ref|NP_519921.1| GALA protein [Ralstonia solanacearum GMI1000]
Length = 401
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 87/299 (29%), Positives = 130/299 (43%), Gaps = 24/299 (8%)
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
+T +GIA L L L L++ GC + A L++ +L LN++R + DDG +
Sbjct: 94 PITSAGIARLLAL-PLERLDVSGCGLDAESARLLASHPTLTVLNISRNAIGDDGAAALAA 152
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
L LN+G N I+D L L L++ IGD G L G L L+ D
Sbjct: 153 NPKLTSLNVGRNGISDAGARALVACAGLTKLDISDNRIGDAGARALAGSAKLNKLDAGDC 212
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
+G G R L+ L ++L + I G LA L SLN+ + G A L +
Sbjct: 213 GIGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLNVCGNALGSAGAALLAA 272
Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
LT LD+ I ++GA L L L + G+ +AG + + ++LT L++ N
Sbjct: 273 SAALTELDIGNNGIGNAGARALGANATLVKLSVANNGIEEAGARALAASTTLTALDIGSN 332
Query: 431 -----------CNLTDKTLELISGLTG------------LVSLNVSNSRITSAGLRHLK 466
N T TL+ + G L +LNV +RI AG+R L+
Sbjct: 333 RIGDAGAQALAANDTLVTLDASANWIGDPGALALADNTRLATLNVGANRIGEAGMRALE 391
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 106/233 (45%), Gaps = 1/233 (0%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
KL SLN+ N I+D+ + L L L IS +++ D+G L G KL L+ C
Sbjct: 155 KLTSLNVGR-NGISDAGARALVACAGLTKLDISDNRIGDAGARALAGSAKLNKLDAGDCG 213
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+ +L+A +L L+L ++ G E + L LN+ N + L
Sbjct: 214 IGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLNVCGNALGSAGAALLAAS 273
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
L L++ + GIG+ G L L L +++ + +G R L+ T L ++++
Sbjct: 274 AALTELDIGNNGIGNAGARALGANATLVKLSVANNGIEEAGARALAASTTLTALDIGSNR 333
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
I D + LA +L +L+ A I D G AL T L L++ RI ++G
Sbjct: 334 IGDAGAQALAANDTLVTLDASANWIGDPGALALADNTRLATLNVGANRIGEAG 386
Score = 38.5 bits (88), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 98/251 (39%), Gaps = 29/251 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L +D+S + + D+G L + L LD C
Sbjct: 178 AGLTKLDISDNRIGDAGARALAGSAKLNKLDAGDC------------------------- 212
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC-NCITDSDMKP 175
I +G +A A L +LDL GG L +L SLN+ C N + +
Sbjct: 213 -GIGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLNV--CGNALGSAGAAL 269
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ L L I + + ++G L L L++ + A +L+A +L L++
Sbjct: 270 LAASAALTELDIGNNGIGNAGARALGANATLVKLSVANNGIEEAGARALAASTTLTALDI 329
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
++ D G + + +L L+ N I D + L T L +LN+ + IG+ G+
Sbjct: 330 GSNRIGDAGAQALAANDTLVTLDASANWIGDPGALALADNTRLATLNVGANRIGEAGMRA 389
Query: 296 LTGLCNLKCLE 306
L L L+
Sbjct: 390 LEASTTLAVLK 400
>gi|298360020|gb|ADI77589.1| truncated internalin A [Listeria monocytogenes]
gi|298360528|gb|ADI77843.1| truncated internalin A [Listeria monocytogenes]
Length = 459
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|320163976|gb|EFW40875.1| tyrosine-protein kinase CSK [Capsaspora owczarzaki ATCC 30864]
Length = 1378
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 105/361 (29%), Positives = 154/361 (42%), Gaps = 7/361 (1%)
Query: 113 FRRNNAITAQGMKAFAGL--INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
+ ++N IT AF GL + ++ L + I G GL L +++ + N IT
Sbjct: 65 YLQSNLITNIPASAFTGLTALQVIYLTSNQIVSISSGA--FSGLSALTYVSL-FNNLITS 121
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ LT L L + + +T GL LT L+L G +T+ ++ S L +L
Sbjct: 122 IPDSLFADLTALTYLGLHGNLITSMAATAFTGLNVLTRLSLYGNQITSISANAFSNLPAL 181
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L L QL+ + F+ + +L L L NEIT L L L+LDS I D
Sbjct: 182 TTLALYDNQLTSIPADAFTGLSALTELTLYDNEITSISANSFTSLPALIILSLDSNRITD 241
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
TGL L L LS Q+ S +GL+ L+S+ L I+ + GL +L
Sbjct: 242 ISANAFTGLTALNILYLSHNQLSSISANAFTGLSGLDSLTLFNNEITSIHVDAFTGLPAL 301
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA-AYLRNFKNLRSLEICGGGLT 409
SL L + IT T+LT L L L +IT A A+ + L L++ +T
Sbjct: 302 TSLYLQSNLITSIPPFVFTNLTALQILVLAYNQITGIPANAFTADLAALNYLDVSENQVT 361
Query: 410 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 469
L SL+ L L N +T GLT L L +S++ T+ K L
Sbjct: 362 SIPANAFAGLHSLSSLFLQGN-QITSILTSTFQGLTALTHLILSDNPFTTLPPGLFKGLP 420
Query: 470 N 470
N
Sbjct: 421 N 421
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 109/247 (44%), Gaps = 7/247 (2%)
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS---CGIGDEGLVNL 296
+++ F+ + +L+V+ L N+I GL+ L ++L + I D +L
Sbjct: 71 ITNIPASAFTGLTALQVIYLTSNQIVSISSGAFSGLSALTYVSLFNNLITSIPDSLFADL 130
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
T L L L + S +GL L ++L I+ S + L +L +L L
Sbjct: 131 TALTYLG---LHGNLITSMAATAFTGLNVLTRLSLYGNQITSISANAFSNLPALTTLALY 187
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
Q+T A T L+ LT L L+ IT A + L L + +TD
Sbjct: 188 DNQLTSIPADAFTGLSALTELTLYDNEITSISANSFTSLPALIILSLDSNRITDISANAF 247
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
L++L +L LS N L+ + +GL+GL SL + N+ ITS + L L SL L
Sbjct: 248 TGLTALNILYLSHN-QLSSISANAFTGLSGLDSLTLFNNEITSIHVDAFTGLPALTSLYL 306
Query: 477 ESCKVTA 483
+S +T+
Sbjct: 307 QSNLITS 313
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 102/268 (38%), Gaps = 37/268 (13%)
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV---GS 314
N GF I V N L L S I + TGL L+ + L+ Q+ S
Sbjct: 47 NKGFTAIPSGIPV------NTTQLYLQSNLITNIPASAFTGLTALQVIYLTSNQIVSISS 100
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
LS LT + N T I D A L++L L L IT A T L L
Sbjct: 101 GAFSGLSALTYVSLFNNLITSIPDS---LFADLTALTYLGLHGNLITSMAATAFTGLNVL 157
Query: 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN---- 430
T L L+G +IT A N L +L + LT LS+LT L L N
Sbjct: 158 TRLSLYGNQITSISANAFSNLPALTTLALYDNQLTSIPADAFTGLSALTELTLYDNEITS 217
Query: 431 -------------------CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 471
+TD + +GLT L L +S+++++S L L
Sbjct: 218 ISANSFTSLPALIILSLDSNRITDISANAFTGLTALNILYLSHNQLSSISANAFTGLSGL 277
Query: 472 RSLTLESCKVTANDIKRLQSRDLPNLVS 499
SLTL + ++T+ + LP L S
Sbjct: 278 DSLTLFNNEITSIHVDAFTG--LPALTS 303
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 3/172 (1%)
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
YL N Q++ F+ + +L +L + N+IT GLT + LNL +
Sbjct: 543 YLQAN--QITSIPASAFAGLSALTILIMFNNKITSIDTDAFTGLTAMSQLNLQDNNLASI 600
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
+ GL LK L+LS+ ++ +GLT L + L+ I+ S L +L
Sbjct: 601 PASAIAGLTALKFLDLSNNKITDISSSEFTGLTALNYLWLNSNRITSISANAFTSLPALA 660
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
+ L A IT A +T LT+LDL RIT A + L +L +
Sbjct: 661 FVWLRANWITAISANAFAGVT-LTYLDLQNNRITSIPANAFTSLTALNTLTL 711
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 81/185 (43%), Gaps = 3/185 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+ GLS LT L NN IT+ AF GL + +L+L+ +
Sbjct: 548 QITSIPASAFAGLSALTIL-IMFNNKITSIDTDAFTGLTAMSQLNLQDNNLASIPASAIA 606
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
GL L+ L++ N ITD +GLT L L ++ +++T L L + L
Sbjct: 607 GLTALKFLDLS-NNKITDISSSEFTGLTALNYLWLNSNRITSISANAFTSLPALAFVWLR 665
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+TA ++ + + +L YL+L +++ F+ + +L L L N T
Sbjct: 666 ANWITAISANAFAGV-TLTYLDLQNNRITSIPANAFTSLTALNTLTLNDNPFTTLPPGLF 724
Query: 273 KGLTN 277
KGL N
Sbjct: 725 KGLPN 729
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 104/409 (25%), Positives = 162/409 (39%), Gaps = 41/409 (10%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL- 151
+I+ ++ GL LTSL + ++N IT+ F L L L L +I G N
Sbjct: 286 EITSIHVDAFTGLPALTSL-YLQSNLITSIPPFVFTNLTALQILVLAY-NQITGIPANAF 343
Query: 152 -KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
L L L++ N +T +GL +L SL + +++T + +GL LT L
Sbjct: 344 TADLAALNYLDVSE-NQVTSIPANAFAGLHSLSSLFLQGNQITSILTSTFQGLTALTHLI 402
Query: 211 LEGCPVTAACLDSLSALG--------SLFYLNLNRCQLSDDGCEKFSKIGSLK------- 255
L P T L +L Y++ N ++ S GS
Sbjct: 403 LSDNPFTTLPPGLFKGLPNGLILSPPTLLYMSPNNFTFGENTVAPPSTYGSASEPYQCDT 462
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC-NLKCLELSDTQVGS 314
V + +D C + S+ C EG + ++G C + C G+
Sbjct: 463 VCGTCYAAGSDACCPSNCLICTSSSV----CTQCSEGAMMVSGSCVSHAC--------GA 510
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
GL SG T ++ N S T I A S+ ++ L A QIT +A L+ L
Sbjct: 511 GGLCTCSG-TTVDCQNRSLTVIPS------AMPSNTLTVYLQANQITSIPASAFAGLSAL 563
Query: 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
T L +F +IT + L + L I L++L L+LS N +T
Sbjct: 564 TILIMFNNKITSIDTDAFTGLTAMSQLNLQDNNLASIPASAIAGLTALKFLDLSNN-KIT 622
Query: 435 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 483
D + +GLT L L ++++RITS L L + L + +TA
Sbjct: 623 DISSSEFTGLTALNYLWLNSNRITSISANAFTSLPALAFVWLRANWITA 671
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 71/167 (42%), Gaps = 5/167 (2%)
Query: 310 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 369
T + +S LS LT L N T I + GL+++ LNL + +A+
Sbjct: 550 TSIPASAFAGLSALTILIMFNNKITSIDTDAFT---GLTAMSQLNLQDNNLASIPASAIA 606
Query: 370 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 429
LT L LDL +ITD ++ L L + +T L +L + L
Sbjct: 607 GLTALKFLDLSNNKITDISSSEFTGLTALNYLWLNSNRITSISANAFTSLPALAFVWLRA 666
Query: 430 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
N +T + +G+T L L++ N+RITS L L +LTL
Sbjct: 667 NW-ITAISANAFAGVT-LTYLDLQNNRITSIPANAFTSLTALNTLTL 711
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 2/175 (1%)
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
GL L L + + ++ S +GLT + +NL ++ +AGL++LK L+L
Sbjct: 557 FAGLSALTILIMFNNKITSIDTDAFTGLTAMSQLNLQDNNLASIPASAIAGLTALKFLDL 616
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
+ITD + T LT L +L L RIT A + L + + +T
Sbjct: 617 SNNKITDISSSEFTGLTALNYLWLNSNRITSISANAFTSLPALAFVWLRANWITAISANA 676
Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 470
+ +LT L+L QN +T + LT L +L ++++ T+ K L N
Sbjct: 677 FAGV-TLTYLDL-QNNRITSIPANAFTSLTALNTLTLNDNPFTTLPPGLFKGLPN 729
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 85/198 (42%), Gaps = 2/198 (1%)
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
N+IT GL+ L L + + I TGL + L L D + S ++
Sbjct: 547 NQITSIPASAFAGLSALTILIMFNNKITSIDTDAFTGLTAMSQLNLQDNNLASIPASAIA 606
Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
GLT L+ ++LS I+D S + GL++L L L++ +IT A TSL L + L
Sbjct: 607 GLTALKFLDLSNNKITDISSSEFTGLTALNYLWLNSNRITSISANAFTSLPALAFVWLRA 666
Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
IT A L L++ +T L++L L L+ N T L
Sbjct: 667 NWITAISANAFAGV-TLTYLDLQNNRITSIPANAFTSLTALNTLTLNDN-PFTTLPPGLF 724
Query: 442 SGLTGLVSLNVSNSRITS 459
GL + L+V+ S+ S
Sbjct: 725 KGLPNGMVLSVAFSQYLS 742
Score = 42.0 bits (97), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 81/187 (43%), Gaps = 1/187 (0%)
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
P + +N ++ + +++T + GL LT+L + +T+ D+ + L ++ LN
Sbjct: 532 PSAMPSNTLTVYLQANQITSIPASAFAGLSALTILIMFNNKITSIDTDAFTGLTAMSQLN 591
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
L L+ + + +LK L+L N+ITD GLT L L L+S I
Sbjct: 592 LQDNNLASIPASAIAGLTALKFLDLSNNKITDISSSEFTGLTALNYLWLNSNRITSISAN 651
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
T L L + L + + +G+T L ++L I+ L++L +L
Sbjct: 652 AFTSLPALAFVWLRANWITAISANAFAGVT-LTYLDLQNNRITSIPANAFTSLTALNTLT 710
Query: 355 LDARQIT 361
L+ T
Sbjct: 711 LNDNPFT 717
>gi|313485081|gb|ADR53011.1| InlA [Listeria monocytogenes]
Length = 800
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--FFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 124/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ + F G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL---FFGNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|290973003|ref|XP_002669239.1| predicted protein [Naegleria gruberi]
gi|284082784|gb|EFC36495.1| predicted protein [Naegleria gruberi]
Length = 313
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 92/177 (51%), Gaps = 1/177 (0%)
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
+ L SL++ IG EG ++ + L L +S Q+G+ G++ + + L+S+N+
Sbjct: 125 MKQLTSLDIGGNQIGAEGAKFISEVKQLTSLNISYNQIGAKGVKFIIEMKQLKSLNIIGN 184
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
I ++ ++ + L SLN+ QI D G+ + + LT L++ RI GA +
Sbjct: 185 QIGAEGVKLISEMKQLASLNIGGNQIGDEGVKFILEMKQLTSLNICLNRIGAEGAKLISE 244
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
K L SL+IC + GVK I+++ L LN+S N + D+ + IS + L SLN
Sbjct: 245 MKQLTSLDICYNRIGTEGVKFIREMKQLKSLNISGN-QIGDEEAKFISEMKQLTSLN 300
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 92/187 (49%), Gaps = 3/187 (1%)
Query: 243 DGCEKFSKIGSLKVL---NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
D E+ I +K L ++G N+I E + + L SLN+ IG +G+ + +
Sbjct: 114 DSIEQAKFINEMKQLTSLDIGGNQIGAEGAKFISEVKQLTSLNISYNQIGAKGVKFIIEM 173
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
LK L + Q+G+ G++ +S + L S+N+ I D ++ + + L SLN+ +
Sbjct: 174 KQLKSLNIIGNQIGAEGVKLISEMKQLASLNIGGNQIGDEGVKFILEMKQLTSLNICLNR 233
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
I G ++ + LT LD+ RI G ++R K L+SL I G + D K I ++
Sbjct: 234 IGAEGAKLISEMKQLTSLDICYNRIGTEGVKFIREMKQLKSLNISGNQIGDEEAKFISEM 293
Query: 420 SSLTLLN 426
LT LN
Sbjct: 294 KQLTSLN 300
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 102/197 (51%), Gaps = 2/197 (1%)
Query: 160 LNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+N+K+ + DS K ++ + L SL I +++ G ++ +++LT LN+ +
Sbjct: 104 VNVKFSRKLLDSIEQAKFINEMKQLTSLDIGGNQIGAEGAKFISEVKQLTSLNISYNQIG 163
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
A + + + L LN+ Q+ +G + S++ L LN+G N+I DE + + +
Sbjct: 164 AKGVKFIIEMKQLKSLNIIGNQIGAEGVKLISEMKQLASLNIGGNQIGDEGVKFILEMKQ 223
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L SLN+ IG EG ++ + L L++ ++G+ G++ + + L+S+N+S I
Sbjct: 224 LTSLNICLNRIGAEGAKLISEMKQLTSLDICYNRIGTEGVKFIREMKQLKSLNISGNQIG 283
Query: 338 DGSLRKLAGLSSLKSLN 354
D + ++ + L SLN
Sbjct: 284 DEEAKFISEMKQLTSLN 300
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 94/187 (50%)
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
++ +++LT L++ G + A +S + L LN++ Q+ G + ++ LK LN
Sbjct: 121 FINEMKQLTSLDIGGNQIGAEGAKFISEVKQLTSLNISYNQIGAKGVKFIIEMKQLKSLN 180
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
+ N+I E + + + L SLN+ IGDEG+ + + L L + ++G+ G +
Sbjct: 181 IIGNQIGAEGVKLISEMKQLASLNIGGNQIGDEGVKFILEMKQLTSLNICLNRIGAEGAK 240
Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
+S + L S+++ + I ++ + + LKSLN+ QI D ++ + LT L+
Sbjct: 241 LISEMKQLTSLDICYNRIGTEGVKFIREMKQLKSLNISGNQIGDEEAKFISEMKQLTSLN 300
Query: 379 LFGARIT 385
+ ++
Sbjct: 301 TYKIKLV 307
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 95/185 (51%), Gaps = 2/185 (1%)
Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
+ ++ + L S+++ I + ++ + L SLN+ QI G+ + + L L
Sbjct: 120 KFINEMKQLTSLDIGGNQIGAEGAKFISEVKQLTSLNISYNQIGAKGVKFIIEMKQLKSL 179
Query: 378 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
++ G +I G + K L SL I G + D GVK I ++ LT LN+ N + +
Sbjct: 180 NIIGNQIGAEGVKLISEMKQLASLNIGGNQIGDEGVKFILEMKQLTSLNICLN-RIGAEG 238
Query: 438 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL-QSRDLPN 496
+LIS + L SL++ +RI + G++ ++ +K L+SL + ++ + K + + + L +
Sbjct: 239 AKLISEMKQLTSLDICYNRIGTEGVKFIREMKQLKSLNISGNQIGDEEAKFISEMKQLTS 298
Query: 497 LVSFR 501
L +++
Sbjct: 299 LNTYK 303
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 380 FGARITDS--GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
F ++ DS A ++ K L SL+I G + G K I ++ LT LN+S N + K
Sbjct: 108 FSRKLLDSIEQAKFINEMKQLTSLDIGGNQIGAEGAKFISEVKQLTSLNISYN-QIGAKG 166
Query: 438 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
++ I + L SLN+ ++I + G++ + +K L SL +
Sbjct: 167 VKFIIEMKQLKSLNIIGNQIGAEGVKLISEMKQLASLNI 205
>gi|290997259|ref|XP_002681199.1| predicted protein [Naegleria gruberi]
gi|284094822|gb|EFC48455.1| predicted protein [Naegleria gruberi]
Length = 449
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 120/260 (46%), Gaps = 20/260 (7%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L L I CSK + I + L LT LN C +++ L L L L L
Sbjct: 155 KSISTFSQLTKLNIQCSKNINMIITSVGSLSNLTYLNASQCNISSVNLKFLQ-LFKLTKL 213
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+L++ + DG + + + +LK LNL IT++C+ HL LT L LN+ IG+EGL
Sbjct: 214 DLSKNNIGGDGMKVIALLTNLKYLNLQDCNITNDCITHLTSLTKLVHLNVGDNYIGNEGL 273
Query: 294 VNLTGLCNLKCLELSD-----------------TQVGSSGLRHLSGLTNLESINLSFTGI 336
++ L NL L + ++ G+ HL+ L NL ++ S I
Sbjct: 274 FLISSLRNLTYLSVERGTGRRFNERQVDIANQGMEINHQGIAHLTNLHNLRHLDFSGKPI 333
Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
D + + L+S++ LN+ +R + +L L +L++ G I D GA L
Sbjct: 334 CDKGIEFIGKLNSIEILNV-SRCNCSGDIESLQKSPHLINLNIVGNPIGDKGAEILSRM- 391
Query: 397 NLRSLEICGGGLTDAGVKHI 416
L L G++ GVK I
Sbjct: 392 TLEELNARNCGISYDGVKLI 411
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 101/389 (25%), Positives = 172/389 (44%), Gaps = 29/389 (7%)
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
T +KA L L +L L R + G ++ L + SL +++ + M L L
Sbjct: 29 TVDELKALRHLSALKELTLLRELPLSYG--SIYYLNNITSLKVRFNTVVLIPRMNHLKHL 86
Query: 180 TNLKSLQISCSKVTD---SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
L++ S+ TD I LK L+ ++ + + LS L L L ++
Sbjct: 87 EILENPN-EKSQFTDIRVGTICKLKNLESF-VVRFPNPRLPPEYFEKLSVLSKLTELEIS 144
Query: 237 RCQLSD-DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
+D + + S L LN+ ++ + + + L+NL LN C I L
Sbjct: 145 TDSSNDWEKAKSISTFSQLTKLNIQCSKNINMIITSVGSLSNLTYLNASQCNISSVNLKF 204
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
L L L L+LS +G G++ ++ LTNL+ +NL I++ + L L+ L LN+
Sbjct: 205 LQ-LFKLTKLDLSKNNIGGDGMKVIALLTNLKYLNLQDCNITNDCITHLTSLTKLVHLNV 263
Query: 356 DARQITDTGLAALTSLTGLTHLDLF-----------------GARITDSGAAYLRNFKNL 398
I + GL ++SL LT+L + G I G A+L N NL
Sbjct: 264 GDNYIGNEGLFLISSLRNLTYLSVERGTGRRFNERQVDIANQGMEINHQGIAHLTNLHNL 323
Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
R L+ G + D G++ I L+S+ +LN+S+ CN + +E + L++LN+ + I
Sbjct: 324 RHLDFSGKPICDKGIEFIGKLNSIEILNVSR-CNCSGD-IESLQKSPHLINLNIVGNPIG 381
Query: 459 SAGLRHLKPLKNLRSLTLESCKVTANDIK 487
G L + L L +C ++ + +K
Sbjct: 382 DKGAEILSRM-TLEELNARNCGISYDGVK 409
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 110/240 (45%), Gaps = 24/240 (10%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
SNL L+ + C IS L+ L+ L LT L +NN I GMK A L NL L+L+
Sbjct: 185 SNLTYLNASQC-NISSVNLKFLQ-LFKLTKLDLSKNN-IGGDGMKVIALLTNLKYLNLQD 241
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS---------- 190
C + + +L L KL LN+ N I + + +S L NL L +
Sbjct: 242 CNITNDCITHLTSLTKLVHLNV-GDNYIGNEGLFLISSLRNLTYLSVERGTGRRFNERQV 300
Query: 191 -------KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
++ GIA+L L L L+ G P+ ++ + L S+ LN++RC S D
Sbjct: 301 DIANQGMEINHQGIAHLTNLHNLRHLDFSGKPICDKGIEFIGKLNSIEILNVSRCNCSGD 360
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
E K L LN+ N I D+ L +T LE LN +CGI +G V L G +K
Sbjct: 361 -IESLQKSPHLINLNIVGNPIGDKGAEILSRMT-LEELNARNCGISYDG-VKLIGNSKIK 417
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 85/186 (45%), Gaps = 6/186 (3%)
Query: 309 DTQVGSSGLRHLSGLTNLESINL--SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
+T V + HL L LE+ N FT I G++ KL L S + ++
Sbjct: 72 NTVVLIPRMNHLKHLEILENPNEKSQFTDIRVGTICKLKNLESF-VVRFPNPRLPPEYFE 130
Query: 367 ALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
L+ L+ LT L++ D A + F L L I + + + LS+LT L
Sbjct: 131 KLSVLSKLTELEISTDSSNDWEKAKSISTFSQLTKLNIQCSKNINMIITSVGSLSNLTYL 190
Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 485
N SQ CN++ L+ + L L L++S + I G++ + L NL+ L L+ C +T +
Sbjct: 191 NASQ-CNISSVNLKFLQ-LFKLTKLDLSKNNIGGDGMKVIALLTNLKYLNLQDCNITNDC 248
Query: 486 IKRLQS 491
I L S
Sbjct: 249 ITHLTS 254
>gi|167861930|gb|ACA05664.1| InlA [Listeria monocytogenes]
gi|167862036|gb|ACA05717.1| InlA [Listeria monocytogenes]
gi|194239408|emb|CAQ76844.1| internalin A [Listeria monocytogenes]
gi|222543296|gb|ACM66668.1| internalin A [Listeria monocytogenes]
gi|298359976|gb|ADI77567.1| internalin A [Listeria monocytogenes]
gi|298360582|gb|ADI77870.1| internalin A [Listeria monocytogenes]
gi|298360712|gb|ADI77935.1| internalin A [Listeria monocytogenes]
gi|298360716|gb|ADI77937.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--FFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 124/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ + F G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL---FFGNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|405757422|ref|YP_006686698.1| internalin A protein InlA, N-terminal part, partial [Listeria
monocytogenes SLCC2479]
gi|145687805|gb|ABP88875.1| truncated internalin A precursor [Listeria monocytogenes]
gi|145687811|gb|ABP88878.1| truncated internalin A precursor [Listeria monocytogenes]
gi|145687813|gb|ABP88879.1| truncated internalin A precursor [Listeria monocytogenes]
gi|167861890|gb|ACA05644.1| InlA [Listeria monocytogenes]
gi|167861942|gb|ACA05670.1| InlA [Listeria monocytogenes]
gi|167861986|gb|ACA05692.1| InlA [Listeria monocytogenes]
gi|194326143|emb|CAQ77230.1| internalin A [Listeria monocytogenes]
gi|298359794|gb|ADI77476.1| truncated internalin A [Listeria monocytogenes]
gi|298359982|gb|ADI77570.1| truncated internalin A [Listeria monocytogenes]
gi|298360074|gb|ADI77616.1| truncated internalin A [Listeria monocytogenes]
gi|298360136|gb|ADI77647.1| truncated internalin A [Listeria monocytogenes]
gi|298360184|gb|ADI77671.1| truncated internalin A [Listeria monocytogenes]
gi|298360286|gb|ADI77722.1| truncated internalin A [Listeria monocytogenes]
gi|298360300|gb|ADI77729.1| truncated internalin A [Listeria monocytogenes]
gi|298360306|gb|ADI77732.1| truncated internalin A [Listeria monocytogenes]
gi|298360344|gb|ADI77751.1| truncated internalin A [Listeria monocytogenes]
gi|298360352|gb|ADI77755.1| truncated internalin A [Listeria monocytogenes]
gi|298360358|gb|ADI77758.1| truncated internalin A [Listeria monocytogenes]
gi|298360602|gb|ADI77880.1| truncated internalin A [Listeria monocytogenes]
gi|298360636|gb|ADI77897.1| truncated internalin A [Listeria monocytogenes]
gi|371942098|gb|AEX60861.1| truncated internaline [Listeria monocytogenes]
gi|371942122|gb|AEX60873.1| truncated internaline [Listeria monocytogenes]
gi|404235304|emb|CBY56706.1| similar to internalin A protein InlA, N-terminal part [Listeria
monocytogenes SLCC2479]
Length = 576
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 122/255 (47%), Gaps = 44/255 (17%)
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
S DG E + +L +N N++TD + LK LT L + +++ I D + L L
Sbjct: 90 SIDGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLT 142
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
NL L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+
Sbjct: 143 NLTGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQV 197
Query: 361 TDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRS 400
TD L L +LT L LD+ +++D S A L N + NL
Sbjct: 198 TD--LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDE 255
Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 256 LSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-- 308
Query: 461 GLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ---NISPLAGLTALT 320
>gi|290981770|ref|XP_002673604.1| hypothetical protein NAEGRDRAFT_58930 [Naegleria gruberi]
gi|284087189|gb|EFC40860.1| hypothetical protein NAEGRDRAFT_58930 [Naegleria gruberi]
Length = 494
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 114/231 (49%), Gaps = 3/231 (1%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
L +LT LN+ V + + L YL+++ +SD+G + S++ L LN+
Sbjct: 224 LHQLTCLNISSNNVGFNTFKPIGNVKQLTYLDVSWNYISDEGAKVLSQLSQLTHLNVNCT 283
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
I E ++ LT L +L EG + + L L++S +G++G+++LS
Sbjct: 284 IIGIEGAKYISKLTKLRTLIAARNNFWIEGCQYFSEMEQLTALDVSHNSIGNTGIKYLSK 343
Query: 323 LTNLESINLSFTGISDGSLRK---LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
+ L +N++ I+ + + LS L L++ + I G+ A+++++ L L++
Sbjct: 344 MKQLTELNINDNAINQFGTEESKLIRELSQLTKLSISSNNIGIEGVTAISTMSQLRTLNI 403
Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
F RI +GA + +NL L+IC + G K I + LT L++++N
Sbjct: 404 FFNRIGLAGAKLISGMQNLTVLDICNNDIGTNGAKEISKMKQLTKLDIARN 454
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 88/349 (25%), Positives = 157/349 (44%), Gaps = 17/349 (4%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
++N + L + ES+N++ + + K L L I S + G + L+ L
Sbjct: 142 MMNRECLEQFESMNVRGISRL--QFYKIFEKTKQLTKLDIGKSIIWLEGFKSITELKHLN 199
Query: 208 LLNLEGCPVTAA-----CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK---VLNL 259
L++ L+S+S L L LN++ ++ G F IG++K L++
Sbjct: 200 SLDMNNMVFMEKESKLELLESISQLHQLTCLNISS---NNVGFNTFKPIGNVKQLTYLDV 256
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
+N I+DE L L+ L LN++ IG EG ++ L L+ L + G ++
Sbjct: 257 SWNYISDEGAKVLSQLSQLTHLNVNCTIIGIEGAKYISKLTKLRTLIAARNNFWIEGCQY 316
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA---LTSLTGLTH 376
S + L ++++S I + ++ L+ + L LN++ I G + L+ LT
Sbjct: 317 FSEMEQLTALDVSHNSIGNTGIKYLSKMKQLTELNINDNAINQFGTEESKLIRELSQLTK 376
Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436
L + I G + LR+L I + AG K I + +LT+L++ N T+
Sbjct: 377 LSISSNNIGIEGVTAISTMSQLRTLNIFFNRIGLAGAKLISGMQNLTVLDICNNDIGTNG 436
Query: 437 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 485
E IS + L L+++ + I + G + LK +K L+SL + ND
Sbjct: 437 AKE-ISKMKQLTKLDIARNMIGNEGAKALKSMKQLKSLRNTFNNIIWND 484
>gi|419761284|ref|ZP_14287540.1| internalin-A [Thermosipho africanus H17ap60334]
gi|407513590|gb|EKF48487.1| internalin-A [Thermosipho africanus H17ap60334]
Length = 598
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 141/272 (51%), Gaps = 27/272 (9%)
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGL---TNLKSLQISCSKVTDSGIAYLKGLQK 205
+ ++ + +LE+L++ + S ++ LSGL NL+SL +S S+V D ++ L L K
Sbjct: 41 ITVQDMWELENLSLSF------SSVRDLSGLEYAVNLESLDLSNSEVPD--LSPLAKLPK 92
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
L L+L GC + L L +L L L+ ++SD +K L++L+L N I+
Sbjct: 93 LVKLDLSGCGIEDLS--LLPNLPNLISLRLSGNEISD--ISPLTKFSKLRMLDLSSNIIS 148
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
D + LK L NLE LNL I D + L+ L LK L+LS ++ S + L+ LTN
Sbjct: 149 D--ISPLKDLPNLEELNLSVNKISD--ITPLSNLTKLKRLDLSYNRI--SDISSLTNLTN 202
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
LE + LS+ ISD S LA L +L L+L +I+D ++ L LT L LDL I+
Sbjct: 203 LEELVLSYNEISDIS--PLANLPNLAGLDLSNNEISD--ISPLKDLTNLELLDLAENEIS 258
Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
D + L N +LR L + + I+
Sbjct: 259 D--ISLLFNLTSLRELYVYPKDFKMKMIMFIE 288
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 109/424 (25%), Positives = 180/424 (42%), Gaps = 99/424 (23%)
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SG 196
L+ + I + LK L LE LN+ N I SD+ PLS LT LK L +S ++++D S
Sbjct: 140 LDLSSNIISDISPLKDLPNLEELNLS-VNKI--SDITPLSNLTKLKRLDLSYNRISDISS 196
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
+ L L++L L E ++ L+ L +L L+L+ ++SD + +L++
Sbjct: 197 LTNLTNLEELVLSYNEISDISP-----LANLPNLAGLDLSNNEISD--ISPLKDLTNLEL 249
Query: 257 LNLGFNEITD-----------ECLVHLKGL-------------------------TNLES 280
L+L NEI+D E V+ K E
Sbjct: 250 LDLAENEISDISLLFNLTSLRELYVYPKDFKMKMIMFIEKYEDVDEDIDYEDIDEDTFED 309
Query: 281 LNLDS------------CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
++LD+ I +E +VN NL+ ++ + + LE+
Sbjct: 310 IDLDNDEYIDVDIDEYIEDIDEETVVNFND-SNLEEAVREALKIEEDEDITVQDMWELEN 368
Query: 329 INLSFTGISDGSLRKLAGLS---SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
++LSF+ S+R L+GL +L+SL+L ++ D L+ L L L LDL G I
Sbjct: 369 LSLSFS-----SVRDLSGLEYAVNLESLDLSNSEVPD--LSPLAKLPKLVKLDLSGCGIE 421
Query: 386 D--------------------SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
D S + L F LR L++ ++D + + L+ L L
Sbjct: 422 DLSLLPNLPNLISLRLSGNEISDISPLTKFSKLRMLDLSSNIISD--ISPLAKLTKLRFL 479
Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 485
+L N ++D + ++ LT L L+ S +++ + L L LR L L+ K+ ND
Sbjct: 480 DLYAN-EVSD--VSPLAKLTKLRVLDFSQNKVN--DISPLVKLTKLRVLELQYNKI--ND 532
Query: 486 IKRL 489
I L
Sbjct: 533 ISPL 536
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 122/256 (47%), Gaps = 25/256 (9%)
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-S 195
D++ T ++ NL+ ++ E+L I+ IT DM L++L +S S V D S
Sbjct: 328 DIDEETVVNFNDSNLEEAVR-EALKIEEDEDITVQDM------WELENLSLSFSSVRDLS 380
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G+ Y L+ L L N E L L+ L L L+L+ C + D + +L
Sbjct: 381 GLEYAVNLESLDLSNSE-----VPDLSPLAKLPKLVKLDLSGCGIED--LSLLPNLPNLI 433
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
L L NEI+D + L + L L+L S I D + L L L+ L+L +V S
Sbjct: 434 SLRLSGNEISD--ISPLTKFSKLRMLDLSSNIISD--ISPLAKLTKLRFLDLYANEV--S 487
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
+ L+ LT L ++ S ++D S L L+ L+ L L +I D ++ L++LT L
Sbjct: 488 DVSPLAKLTKLRVLDFSQNKVNDIS--PLVKLTKLRVLELQYNKIND--ISPLSNLTNLI 543
Query: 376 HLDLFGARITDSGAAY 391
LDL G +I+D +
Sbjct: 544 GLDLTGNKISDISPLF 559
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 112/246 (45%), Gaps = 32/246 (13%)
Query: 75 IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
I ++D L++L +F GLE+ NL SL + + A L LV
Sbjct: 41 ITVQDMWELENLSLSFSSVRDLSGLEYA---VNLESLDLSNSEV---PDLSPLAKLPKLV 94
Query: 135 KLDLERC----------------TRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPLS 177
KLDL C R+ G + ++ L K L + + SD+ PL
Sbjct: 95 KLDLSGCGIEDLSLLPNLPNLISLRLSGNEISDISPLTKFSKLRMLDLSSNIISDISPLK 154
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L NL+ L +S +K++D I L L KL L+L ++ SL+ L +L L L+
Sbjct: 155 DLPNLEELNLSVNKISD--ITPLSNLTKLKRLDLSYNRISDIS--SLTNLTNLEELVLSY 210
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV-NL 296
++SD + + +L L+L NEI+D + LK LTNLE L+L I D L+ NL
Sbjct: 211 NEISD--ISPLANLPNLAGLDLSNNEISD--ISPLKDLTNLELLDLAENEISDISLLFNL 266
Query: 297 TGLCNL 302
T L L
Sbjct: 267 TSLREL 272
>gi|371942108|gb|AEX60866.1| truncated internaline [Listeria monocytogenes]
Length = 491
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|255028812|ref|ZP_05300763.1| internalin A [Listeria monocytogenes LO28]
Length = 502
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 90 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 143
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 144 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 195
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 196 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 248
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 249 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 302
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 303 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 360
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 361 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 418
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 419 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 451
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 84 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 136
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 137 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 191
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 192 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 249
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 250 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 300
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 301 -NISPLAGLTALT 312
>gi|407849405|gb|EKG04153.1| hypothetical protein TCSYLVIO_004793 [Trypanosoma cruzi]
Length = 835
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 108/425 (25%), Positives = 190/425 (44%), Gaps = 63/425 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S+L ++ L + +++ +++L +C +L+ + N C + LE L L LT LS N
Sbjct: 193 SNLRNLTLCNTPLSEVMMLYLSECVSLERVVVNSCRGLR--SLECLSSLQRLTELSLL-N 249
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
IT +G+ + +L + L+ C MKL+ +N L
Sbjct: 250 MGITEEGLAFISSCNSLRHIQLDNC-------------MKLQGINC-------------L 283
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
L L++L +S ++V+D GI L L+ L L L ++ ++ + L L L++
Sbjct: 284 GSLIGLRTLSVSRNRVSDDGIRSLSNLRNLEQLRLVSFNRLSS-VEPVLCLDKLLELDIT 342
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
++D+GC + G ++ L L + C+ ++ + L SL
Sbjct: 343 ENWVTDEGCAALANCGQIQKLKLA----SCRCVSDVRWICALTSLRF------------- 385
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL 355
L+LS T V S+ L+ L+ LE +++ S +G+ D S + GL SL L+L
Sbjct: 386 --------LDLSKTHVRSADLQLLTVCQRLEELHVASCSGVKDASF--VEGLLSLGHLDL 435
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
I D G +L T LT L L R +TD ++ K+L +L + G + DA +
Sbjct: 436 TDTSIKDAGTQSLRKCTALTFLSLQDCRFLTD--IQFVEPLKDLLNLNLEGTEVVDANII 493
Query: 415 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
+ + L +L+L LTD + + L L SL++S + +T G+ + +L +
Sbjct: 494 PLMHCTKLEVLSLRHCLFLTD--VRCLRELKALKSLDLSGTYVTDEGVSDVSQCISLERI 551
Query: 475 TLESC 479
L C
Sbjct: 552 DLSGC 556
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 114/487 (23%), Positives = 194/487 (39%), Gaps = 115/487 (23%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVND-KWMDVIASQGSSLLSVDLSGSDVTDSGLIHL 77
+T+ A +C +Q L L V+D +W+ + +SL +DLS + V + L L
Sbjct: 346 VTDEGCAALANCGQIQKLKLASCRCVSDVRWICAL----TSLRFLDLSKTHVRSADLQLL 401
Query: 78 KDCSNLQSLDFNFC----------------------IQISDGGLEHLRGLSNLTSLSFRR 115
C L+ L C I D G + LR + LT LS +
Sbjct: 402 TVCQRLEELHVASCSGVKDASFVEGLLSLGHLDLTDTSIKDAGTQSLRKCTALTFLSLQD 461
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+T ++ L +L+ L+LE + ++ L KLE L+++ +C+ +D++
Sbjct: 462 CRFLT--DIQFVEPLKDLLNLNLEGTEVVDANIIPLMHCTKLEVLSLR--HCLFLTDVRC 517
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L L LKSL +S + VTD G++ + L ++L GC + + L L +L ++
Sbjct: 518 LRELKALKSLDLSGTYVTDEGVSDVSQCISLERIDLSGCCLITH-FEFLRPLTALRHVIA 576
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
+R + LD G+G G V
Sbjct: 577 DRMNV------------------------------------------LDVTGLGGSGSVE 594
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK-LAGLSSLKSLN 354
+ + K ++GS G+ L +L +L + I+D + L SL+ LN
Sbjct: 595 RVSIADCK-------RLGSMGMLEAPRLLDL---SLKKSAITDSGIHSVLLRCHSLRRLN 644
Query: 355 L-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
L + IT+ L+A+ L LT L + +IT+ A++ L L++
Sbjct: 645 LQNCTSITE--LSAVAQLPSLTELLVRNMKITNKSVAFVARCATLEKLQM-------VEC 695
Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 473
I D++SL L+ LV L++S + +TS G+ L NL+
Sbjct: 696 VEITDVNSLKYLH-------------------RLVELDLSRTSVTSGGIVGLARCYNLKK 736
Query: 474 LTLESCK 480
L L C+
Sbjct: 737 LNLSGCR 743
Score = 41.6 bits (96), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 27/164 (16%)
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
SG+ +L L+NL ++ L T +S+ + L+ SL+ + +++ + + L L+SL L
Sbjct: 184 SGVTNLGVLSNLRNLTLCNTPLSEVMMLYLSECVSLERVVVNSCRGLRS-LECLSSLQRL 242
Query: 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
T L L IT+ G A++ + +LR +++ NC +
Sbjct: 243 TELSLLNMGITEEGLAFISSCNSLRHIQL-------------------------DNC-MK 276
Query: 435 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 478
+ + + L GL +L+VS +R++ G+R L L+NL L L S
Sbjct: 277 LQGINCLGSLIGLRTLSVSRNRVSDDGIRSLSNLRNLEQLRLVS 320
>gi|223698697|gb|ACN19038.1| truncated internalin A [Listeria monocytogenes]
gi|223698841|gb|ACN19134.1| truncated internalin A [Listeria monocytogenes]
gi|223698877|gb|ACN19158.1| truncated internalin A [Listeria monocytogenes]
gi|223698922|gb|ACN19188.1| truncated internalin A [Listeria monocytogenes]
Length = 406
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 341
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 342 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 374
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 7 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 60 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 223
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 224 -NISPLAGLTALT 235
>gi|261334051|emb|CBH17045.1| T. brucei spp.-specific protein [Trypanosoma brucei gambiense DAL972]
Length = 1399
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 128/489 (26%), Positives = 210/489 (42%), Gaps = 79/489 (16%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI---- 119
LS + + D + H+ +C +L +L+ FC I+D + LSN+T L R N
Sbjct: 804 LSNTRINDENIRHISECKSLNTLNLAFCNDITD-----ITALSNITML--RELNIDWCFN 856
Query: 120 TAQGMKAFAGLINLVKLDLERC------TRIHGGLVNLKGLMKLESLNIKWCNCI----- 168
+G++A L L +LD ++C + + K L+KL N + C+
Sbjct: 857 IEKGVEALGKLPKLRELDAKKCGTSVRWMQQYPYNTLFKSLVKLNLENGRESFCVGTLSS 916
Query: 169 -------------TDSDMKPLSGLTNLKSLQISCSKVTD---SGIAYLKGLQKLTLLNLE 212
+ P+S L L+ L + +V D GI+ K LQ L N+
Sbjct: 917 TAIVEELLLGRACEPYHLPPISSLRRLRVLNLDDGRVCDIWLEGISQSKSLQSL---NVS 973
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
C + +LS+L +L LN+N C G E F + L+V L +T+E + L
Sbjct: 974 NCNYITD-ISALSSLSTLEELNVNCCDRIRKGWEAFEALTRLRVATLSVTWVTNEGIRLL 1032
Query: 273 KGLTN-----------------------LESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
G N LE L + +C +EGL+ + L L+ L L
Sbjct: 1033 SGCKNLRNLELYCCRDVSNIEPINNIKSLEELTIQNCHNINEGLLKVGMLPRLRVLVLRK 1092
Query: 310 TQVGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNLDA--RQITDTGLA 366
Q L L +L + L+ G + ++ ++ +++LK L + R + D G
Sbjct: 1093 LQSTYFSLSSLGESKSL--VKLTIEGPEELCDIKLISNIATLKELKIAHGDRLLNDVG-- 1148
Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
L L L L L + ++ + ++L+SL+I + HI +L++L LN
Sbjct: 1149 DLGKLPWLHVLTLSHFNMGNTCFESVCKIRSLKSLDI-THSFELPDIYHISNLTALEELN 1207
Query: 427 LSQNCNLTDKTLELISGLTGLVSLNVSNSRI-TSAGLRHLKPLKNLRSLTLESCKVT--- 482
LS C E ++ L L LN+S++R+ TS G ++ K+L +L LESC +T
Sbjct: 1208 LS-GCYHIISGWEALTALPRLRVLNLSSTRVTTSYGGYYISRCKSLITLNLESCDMTDAS 1266
Query: 483 -ANDIKRLQ 490
DIK L+
Sbjct: 1267 CLADIKTLE 1275
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 127/517 (24%), Positives = 201/517 (38%), Gaps = 122/517 (23%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS + +TD + H C L +LD +FC ++ D + LSN+T+L
Sbjct: 590 LSNTHITDRDISHFSKCKELVTLDLSFCDELFD-----ITSLSNITTLE----------- 633
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC------------------ 165
L+L+ C++I GL L L +L LN+K
Sbjct: 634 -----------DLNLDNCSKIRKGLSVLGELPRLRVLNVKGVHLTNSVIGSLGNGKSFVK 682
Query: 166 ----NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV----- 216
NC SD+ LS L+ LK L + SGI L L +L +L+L +
Sbjct: 683 LILDNCKGLSDVTFLSSLSTLKELNLHHCDAVTSGIGTLGRLLQLRVLDLGWTKIDNNSL 742
Query: 217 --TAAC-----------------LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
AC + ++++L +L LN++ C G F + L+V
Sbjct: 743 EDICACSSPLVSLNLSHCKEITSISAIASLNALEKLNIDNCCHVTSGWNVFGTLHQLRVA 802
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG---S 314
L I DE + H+ +L +LNL C + ++T L N+ L +
Sbjct: 803 VLSNTRINDENIRHISECKSLNTLNLAFCN----DITDITALSNITMLRELNIDWCFNIE 858
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAG---LSSLKSLNLD--------------- 356
G+ L L L ++ G S +++ SL LNL+
Sbjct: 859 KGVEALGKLPKLRELDAKKCGTSVRWMQQYPYNTLFKSLVKLNLENGRESFCVGTLSSTA 918
Query: 357 -------ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409
R L ++SL L L+L R+ D + K+L+SL +
Sbjct: 919 IVEELLLGRACEPYHLPPISSLRRLRVLNLDDGRVCDIWLEGISQSKSLQSLNV------ 972
Query: 410 DAGVKHIKDLSSL----TLLNLSQN-CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
+ +I D+S+L TL L+ N C+ K E LT L +S + +T+ G+R
Sbjct: 973 -SNCNYITDISALSSLSTLEELNVNCCDRIRKGWEAFEALTRLRVATLSVTWVTNEGIRL 1031
Query: 465 LKPLKNLRSLTLESCKVTA-----NDIKRLQSRDLPN 496
L KNLR+L L C+ + N+IK L+ + N
Sbjct: 1032 LSGCKNLRNLELYCCRDVSNIEPINNIKSLEELTIQN 1068
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 108/410 (26%), Positives = 192/410 (46%), Gaps = 28/410 (6%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
++ D LE + +L SL+ N IT + A + L L +L++ C RI G +
Sbjct: 952 RVCDIWLEGISQSKSLQSLNVSNCNYIT--DISALSSLSTLEELNVNCCDRIRKGWEAFE 1009
Query: 153 GLMKLE--SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
L +L +L++ W +T+ ++ LSG NL++L++ C + S I + ++ L L
Sbjct: 1010 ALTRLRVATLSVTW---VTNEGIRLLSGCKNLRNLELYCCRDV-SNIEPINNIKSLEELT 1065
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECL 269
++ C L + L L L L + Q + + SL L + G E+ D
Sbjct: 1066 IQNCHNINEGLLKVGMLPRLRVLVLRKLQSTYFSLSSLGESKSLVKLTIEGPEELCD--- 1122
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTG----LCNLKCLELSDTQVGSSGLRHLSGLTN 325
+K ++N+ +L GD L+N G L L L LS +G++ + + +
Sbjct: 1123 --IKLISNIATLKELKIAHGDR-LLNDVGDLGKLPWLHVLTLSHFNMGNTCFESVCKIRS 1179
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L+S++++ + + ++ L++L+ LNL +G ALT+L L L+L R+T
Sbjct: 1180 LKSLDITHS-FELPDIYHISNLTALEELNLSGCYHIISGWEALTALPRLRVLNLSSTRVT 1238
Query: 386 DS-GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 444
S G Y+ K+L +L + +TDA + D+ +L L++ + C + + L
Sbjct: 1239 TSYGGYYISRCKSLITLNLESCDMTDASC--LADIKTLEELHIGK-CEELTRGFSALFTL 1295
Query: 445 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI---KRLQS 491
L LN+ +S IT LR ++ + L L CK NDI +R++S
Sbjct: 1296 PQLRILNLMDSLITDEDLREIQLSHTIEDLNLSYCK-ELNDITPVRRIKS 1344
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 117/431 (27%), Positives = 194/431 (45%), Gaps = 43/431 (9%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ ++L +DL+ +++ DS + + C+ L L + C I D + L+ L L+
Sbjct: 225 SRLTNLKCLDLNSTNIDDSCIGEISACAKLSKLSVSECNNIIDA--TPISQLAALEELNL 282
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N IT +G+ L+ L LDL + L +L LE LN+ +C I +++
Sbjct: 283 NSNCHIT-KGIGTLGMLLRLRMLDLSGVSVEDNFLKDLCDCGPLERLNLSYC--IQLTNI 339
Query: 174 KPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
PLS T ++ L ++ C ++T GI + L KL +L+++G ++ LDS+ GSL
Sbjct: 340 NPLSNATAIEELNLNGCRRIT-RGIGVVWALPKLRVLHMKGVHLSEPSLDSVGTGGSLVK 398
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
++L+ C GF ++T L + LE LN+ C G
Sbjct: 399 VSLDNCA--------------------GFGDMT-----LLSSIVTLEELNIQKCADIISG 433
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLK 351
+ L L L+ L + + + S + +L + L S TG+S+ + LA + +L+
Sbjct: 434 VCCLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLTLESITGLSN--VEALANILTLE 491
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF---KNLRSLEICGGGL 408
L+L D G+ L +L L LDL G T++ + LR + + SL +
Sbjct: 492 KLSLLGCNGIDAGIGCLGNLPQLKVLDLSG---TNTDSDSLRGLCVSQTIVSLNL-SHCW 547
Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 468
V HI L +L LNLS +C + E + L L +SN+ IT + H
Sbjct: 548 KVTSVFHISALETLNELNLS-DCIRINAGWEALEKLQQLHVAILSNTHITDRDISHFSKC 606
Query: 469 KNLRSLTLESC 479
K L +L L C
Sbjct: 607 KELVTLDLSFC 617
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 128/478 (26%), Positives = 213/478 (44%), Gaps = 62/478 (12%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
V D W++ I SQ SL S+++S + +TD + L S L+ L+ N C +I G E
Sbjct: 953 VCDIWLEGI-SQSKSLQSLNVSNCNYITD--ISALSSLSTLEELNVNCCDRIRKG-WEAF 1008
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L+ L + +T +G++ +G NL L+L C R + + + LE L I
Sbjct: 1009 EALTRLRVATLSVT-WVTNEGIRLLSGCKNLRNLEL-YCCRDVSNIEPINNIKSLEELTI 1066
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG----CPVTA 218
+ C+ I + +K + L L+ L + + T ++ L + L L +EG C +
Sbjct: 1067 QNCHNINEGLLK-VGMLPRLRVLVLRKLQSTYFSLSSLGESKSLVKLTIEGPEELCDIKL 1125
Query: 219 AC----------------LDSLSALGSLFYLN---LNRCQLSDDGCEKFSKIGSLKVLNL 259
L+ + LG L +L+ L+ + + E KI SLK L++
Sbjct: 1126 ISNIATLKELKIAHGDRLLNDVGDLGKLPWLHVLTLSHFNMGNTCFESVCKIRSLKSLDI 1185
Query: 260 GFN-EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS-GL 317
+ E+ D + H+ LT LE LNL C G LT L L+ L LS T+V +S G
Sbjct: 1186 THSFELPD--IYHISNLTALEELNLSGCYHIISGWEALTALPRLRVLNLSSTRVTTSYGG 1243
Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
++S +L ++NL ++D S LA + +L+ L++ + G +AL +L L L
Sbjct: 1244 YYISRCKSLITLNLESCDMTDASC--LADIKTLEELHIGKCEELTRGFSALFTLPQLRIL 1301
Query: 378 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
+L + ITD ++LR +++ I+DL NLS L D T
Sbjct: 1302 NLMDSLITD---------EDLREIQLS---------HTIEDL------NLSYCKELNDIT 1337
Query: 438 -LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL 494
+ I + + S R G R L L L + +++ V+ + K L+ R +
Sbjct: 1338 PVRRIKSIKKMDLHRSSEGRGLREGFRSLLELPCLSWVDIKNANVSFDVYKELKERKV 1395
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 107/421 (25%), Positives = 179/421 (42%), Gaps = 35/421 (8%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I + HL + L L+ +T ++ + L NL LDL + +
Sbjct: 193 IDNNDARHLFNIGTLEELAITDTMQLT--NIRGISRLTNLKCLDLNSTNIDDSCIGEISA 250
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
KL L++ CN I D+ P+S L L+ L ++ + GI L L +L +L+L G
Sbjct: 251 CAKLSKLSVSECNNIIDA--TPISQLAALEELNLNSNCHITKGIGTLGMLLRLRMLDLSG 308
Query: 214 CPVTAACLDSLSALGSLFYLNLNRC----------------QLSDDGCEKFSK------- 250
V L L G L LNL+ C +L+ +GC + ++
Sbjct: 309 VSVEDNFLKDLCDCGPLERLNLSYCIQLTNINPLSNATAIEELNLNGCRRITRGIGVVWA 368
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD 309
+ L+VL++ +++ L + +L ++LD+C G GD L L+ + L+ L +
Sbjct: 369 LPKLRVLHMKGVHLSEPSLDSVGTGGSLVKVSLDNCAGFGDMTL--LSSIVTLEELNIQK 426
Query: 310 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAAL 368
SG+ L L L +N+ IS + SL L L++ IT + + AL
Sbjct: 427 CADIISGVCCLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLTLES--ITGLSNVEAL 484
Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
++ L L L G D+G L N L+ L++ G ++ + ++ LNLS
Sbjct: 485 ANILTLEKLSLLGCNGIDAGIGCLGNLPQLKVLDLSGTNTDSDSLRGLCVSQTIVSLNLS 544
Query: 429 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
+T ++ IS L L LN+S+ +AG L+ L+ L L + +T DI
Sbjct: 545 HCWKVT--SVFHISALETLNELNLSDCIRINAGWEALEKLQQLHVAILSNTHITDRDISH 602
Query: 489 L 489
Sbjct: 603 F 603
>gi|112959464|gb|ABI27259.1| internalin A [Listeria monocytogenes]
Length = 698
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 122/388 (31%), Positives = 180/388 (46%), Gaps = 60/388 (15%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++ S + +TD + LKD + L + N QI+D + L L+NLT L+ NN IT
Sbjct: 1 INFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQIT- 53
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+ L NL +L+L T + L GL L+ L+ N +TD +KPL+ LT
Sbjct: 54 -DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTT 106
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRC 238
L+ L IS +KV+D + L KLT NLE T + ++ LG +L L+LN
Sbjct: 107 LERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGN 159
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
QL D G + + +L L+L N+I++ L L GLT L L L + I + + L G
Sbjct: 160 QLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAG 213
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK----------- 343
L L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 214 LTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKV 271
Query: 344 -----LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN---- 394
LA L+++ L+ QI+D L L +LT +T L L T+ Y N
Sbjct: 272 SDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIP 329
Query: 395 --FKNLRSLEICGGGLTDAGVKHIKDLS 420
KN+ I ++D G D++
Sbjct: 330 NTVKNVTGALIAPATISDGGSYAEPDIT 357
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 108/214 (50%), Gaps = 23/214 (10%)
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
N+I D + L LTNL L L + I D + L L NL LELS + S + LS
Sbjct: 28 NQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALS 81
Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 82 GLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATN 136
Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
+I+D L NL L + G L D G + L++LT L+L+ N L +
Sbjct: 137 NQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPL 189
Query: 442 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
SGLT L L + ++I+ ++ PL L +LT
Sbjct: 190 SGLTKLTELKLGANQIS-----NISPLAGLTALT 218
>gi|167861956|gb|ACA05677.1| InlA [Listeria monocytogenes]
Length = 800
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 122/391 (31%), Positives = 183/391 (46%), Gaps = 56/391 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
+ LT L+ L IS +KV+D S +A L L+ L N + +T L L +L L+L
Sbjct: 204 ANLTTLERLDISSNKVSDISVLARLPTLESLIATNNQISDITP-----LGILTNLDELSL 258
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
N QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370
Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
LA L+++ L+ QI+D L L +LT +T L L T++ Y N
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428
Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
KN+ I ++D G D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 109/389 (28%), Positives = 168/389 (43%), Gaps = 96/389 (24%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + LE LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGLEYLN-------------------NLTQINFSNNQLTD--ITPLKDLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+D L +N Q++D + + +L L L N+ITD
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
+ LK LTNL L L S I D + L+GL NL+ L + QV + L+ L+ LT L
Sbjct: 157 --IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPLANLTTL 209
Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
E +++S +SD S+ LA L +L+SL QI+D +T L LT+LD
Sbjct: 210 ERLDISSNKVSDISV--LARLPTLESLIATNNQISD-----ITPLGILTNLD-------- 254
Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 446
L + G L D G + L++LT L+L+ N L +SGLT
Sbjct: 255 -------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTK 296
Query: 447 LVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
L L + ++I+ ++ PL L +LT
Sbjct: 297 LTELKLGANQIS-----NISPLAGLTALT 320
>gi|441473145|emb|CCQ22899.1| Internalin-A [Listeria monocytogenes N53-1]
Length = 455
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 121/385 (31%), Positives = 181/385 (47%), Gaps = 60/385 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAG 412
N KN+ I ++D G
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGG 451
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|167861934|gb|ACA05666.1| InlA [Listeria monocytogenes]
gi|194326141|emb|CAQ77229.1| internalin A [Listeria monocytogenes]
Length = 538
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|371942144|gb|AEX60884.1| truncated internaline [Listeria monocytogenes]
Length = 491
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|145687803|gb|ABP88874.1| truncated internalin A precursor [Listeria monocytogenes]
gi|145687809|gb|ABP88877.1| truncated internalin A precursor [Listeria monocytogenes]
gi|194326155|emb|CAQ77236.1| internalin A [Listeria monocytogenes]
gi|294358379|gb|ADE73842.1| truncated InlA [Listeria monocytogenes]
gi|294358381|gb|ADE73843.1| truncated InlA [Listeria monocytogenes]
gi|294358383|gb|ADE73844.1| truncated InlA [Listeria monocytogenes]
gi|294358385|gb|ADE73845.1| truncated InlA [Listeria monocytogenes]
gi|298359890|gb|ADI77524.1| truncated internalin A [Listeria monocytogenes]
gi|298359938|gb|ADI77548.1| truncated internalin A [Listeria monocytogenes]
gi|298359960|gb|ADI77559.1| truncated internalin A [Listeria monocytogenes]
gi|298360012|gb|ADI77585.1| truncated internalin A [Listeria monocytogenes]
gi|371942072|gb|AEX60848.1| truncated internaline [Listeria monocytogenes]
gi|371942094|gb|AEX60859.1| truncated internaline [Listeria monocytogenes]
gi|371942120|gb|AEX60872.1| truncated internaline [Listeria monocytogenes]
gi|371942130|gb|AEX60877.1| truncated internaline [Listeria monocytogenes]
Length = 491
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|313485040|gb|ADR52996.1| InlA [Listeria monocytogenes]
Length = 491
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|406830743|ref|ZP_11090337.1| hypothetical protein SpalD1_03864 [Schlesneria paludicola DSM
18645]
Length = 304
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 113/240 (47%), Gaps = 35/240 (14%)
Query: 288 IGDEGLVNLTGLCNLKCLEL---SDTQVGSSGLRHLSGLTNLESINLSFTGISD------ 338
+ DEG L L L +E DT++ + LR L G +L+ +++SF ISD
Sbjct: 58 VTDEGNRALKELFELPAIEFLGTGDTELQPATLRALQGKRSLKRLSISFAKISDDSAKLL 117
Query: 339 GSLRKLA-------------------GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
G+LR L L+SLK L L R D + L + L L +
Sbjct: 118 GTLRSLEVLELRAQVEIHPKVLGEVFNLTSLKELTLSDRLADDPAMEELRRMPYLKTLTV 177
Query: 380 FGARITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLS-QNCNLTDKT 437
++D+G A LR K+LR+L I G +T+ GV+H LS L L +L N+TDK
Sbjct: 178 RSVFVSDAGLASLRQVKSLRNLRILLGPKVTEEGVRH---LSELDLADLDITYLNVTDKE 234
Query: 438 LELISGLTGLVSLN-VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 496
L+ + GL L VS +++T + L L L+ L + K++ I +L+ R LPN
Sbjct: 235 LKSLRKFKGLKGLRLVSAAKVTDEAVPFLSELSELKRLDIADAKLSKAGIGQLE-RALPN 293
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 128/285 (44%), Gaps = 36/285 (12%)
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
R AI + G +++V +L + T G LK L +L ++ D++++
Sbjct: 32 REGAIVQRVDSLPDGPVSVVTYNLRQVT--DEGNRALKELFELPAIEFLGTG---DTELQ 86
Query: 175 P-----LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
P L G +LK L IS +K++D L L+ L +L L A LG
Sbjct: 87 PATLRALQGKRSLKRLSISFAKISDDSAKLLGTLRSLEVLELR-----AQVEIHPKVLGE 141
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
+F L SLK L L D + L+ + L++L + S +
Sbjct: 142 VFNLT------------------SLKELTLSDRLADDPAMEELRRMPYLKTLTVRSVFVS 183
Query: 290 DEGLVNLTGLCNLKCLE-LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
D GL +L + +L+ L L +V G+RHLS L +L +++++ ++D L+ L
Sbjct: 184 DAGLASLRQVKSLRNLRILLGPKVTEEGVRHLSEL-DLADLDITYLNVTDKELKSLRKFK 242
Query: 349 SLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
LK L L A ++TD + L+ L+ L LD+ A+++ +G L
Sbjct: 243 GLKGLRLVSAAKVTDEAVPFLSELSELKRLDIADAKLSKAGIGQL 287
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 5/140 (3%)
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE--- 402
G S+ + NL RQ+TD G AL L L ++ G T+ A LR + RSL+
Sbjct: 46 GPVSVVTYNL--RQVTDEGNRALKELFELPAIEFLGTGDTELQPATLRALQGKRSLKRLS 103
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
I ++D K + L SL +L L + K L + LT L L +S+ +
Sbjct: 104 ISFAKISDDSAKLLGTLRSLEVLELRAQVEIHPKVLGEVFNLTSLKELTLSDRLADDPAM 163
Query: 463 RHLKPLKNLRSLTLESCKVT 482
L+ + L++LT+ S V+
Sbjct: 164 EELRRMPYLKTLTVRSVFVS 183
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 2/145 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+SL + LS D + L+ L++L + +SD GL LR + +L +L
Sbjct: 146 TSLKELTLSDRLADDPAMEELRRMPYLKTLTVR-SVFVSDAGLASLRQVKSLRNLRILLG 204
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T +G++ + L +L LD+ L +L+ L+ L + +TD + L
Sbjct: 205 PKVTEEGVRHLSEL-DLADLDITYLNVTDKELKSLRKFKGLKGLRLVSAAKVTDEAVPFL 263
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLK 201
S L+ LK L I+ +K++ +GI L+
Sbjct: 264 SELSELKRLDIADAKLSKAGIGQLE 288
>gi|297171917|gb|ADI22904.1| hypothetical protein [uncultured Rhizobium sp. HF0500_35F13]
Length = 412
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 2/165 (1%)
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
A + G + +T+ +T L+ L LG++ YL+L+ + DDG +K+ L+VL
Sbjct: 41 AQVSGTRSVTV-RFTNSALTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVL 99
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
L EITD L L++L L +GD L L L+++ QV SGL
Sbjct: 100 VLSGTEITDTGFSQLSNLSDLNQLTASEL-MGDGTTAALASATKLNFLDMTGGQVTDSGL 158
Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
HLSG+ NL+ + LS T I+D L L ++ L+ L L+ +ITD
Sbjct: 159 SHLSGMKNLKRLTLSRTAITDKGLEHLQSITVLRDLQLNNTKITD 203
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 79/155 (50%), Gaps = 2/155 (1%)
Query: 159 SLNIKWCN-CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
S+ +++ N +T D++PL L + L +S + V D G+ ++ L+ L +L L G +T
Sbjct: 48 SVTVRFTNSALTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGTEIT 107
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
LS L L L + + D + L L++ ++TD L HL G+ N
Sbjct: 108 DTGFSQLSNLSDLNQLTASEL-MGDGTTAALASATKLNFLDMTGGQVTDSGLSHLSGMKN 166
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
L+ L L I D+GL +L + L+ L+L++T++
Sbjct: 167 LKRLTLSRTAITDKGLEHLQSITVLRDLQLNNTKI 201
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 79/147 (53%), Gaps = 1/147 (0%)
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
+T + L L L + L+L +GD+G+V++ L L+ L LS T++ +G LS L
Sbjct: 58 LTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGTEITDTGFSQLSNL 117
Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
++L + S + DG+ LA + L L++ Q+TD+GL+ L+ + L L L
Sbjct: 118 SDLNQLTASEL-MGDGTTAALASATKLNFLDMTGGQVTDSGLSHLSGMKNLKRLTLSRTA 176
Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTD 410
ITD G +L++ LR L++ +TD
Sbjct: 177 ITDKGLEHLQSITVLRDLQLNNTKITD 203
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 101/201 (50%), Gaps = 33/201 (16%)
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L + L+LSDT VG G+ H++ L L+ + LS T
Sbjct: 69 LGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGT------------------------ 104
Query: 359 QITDTGLAALTSLTGLTHL---DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
+ITDTG + L++L+ L L +L G D A L + L L++ GG +TD+G+ H
Sbjct: 105 EITDTGFSQLSNLSDLNQLTASELMG----DGTTAALASATKLNFLDMTGGQVTDSGLSH 160
Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
+ + +L L LS+ +TDK LE + +T L L ++N++IT GL L+ L NL L
Sbjct: 161 LSGMKNLKRLTLSRTA-ITDKGLEHLQSITVLRDLQLNNTKITDEGLLLLEGLSNLNVLA 219
Query: 476 LESCKVTANDIKRLQSRDLPN 496
+ T N + +LQ+ LP+
Sbjct: 220 ITGTGTTLNGVTKLQAA-LPD 239
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 78/162 (48%), Gaps = 14/162 (8%)
Query: 328 SINLSFT--GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
S+ + FT ++ L L L ++ L+L + D G+ + L GL L L G IT
Sbjct: 48 SVTVRFTNSALTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGTEIT 107
Query: 386 DSGAAYLRNFKNLRSL---EICGGGLTDAGVKHIKDLSSLTLLNL--SQNCNLTDKTLEL 440
D+G + L N +L L E+ G G T A L+S T LN +TD L
Sbjct: 108 DTGFSQLSNLSDLNQLTASELMGDGTTAA-------LASATKLNFLDMTGGQVTDSGLSH 160
Query: 441 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
+SG+ L L +S + IT GL HL+ + LR L L + K+T
Sbjct: 161 LSGMKNLKRLTLSRTAITDKGLEHLQSITVLRDLQLNNTKIT 202
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 8/135 (5%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR--NNAI 119
+DLS + V D G++H+ LQ L + +I+D G L LS+L L+ +
Sbjct: 75 LDLSDTSVGDDGMVHINKLEGLQVLVLS-GTEITDTGFSQLSNLSDLNQLTASELMGDGT 133
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
TA A A L LD+ GL +L G+ L+ L + ITD ++ L +
Sbjct: 134 TA----ALASATKLNFLDMTGGQVTDSGLSHLSGMKNLKRLTLSRT-AITDKGLEHLQSI 188
Query: 180 TNLKSLQISCSKVTD 194
T L+ LQ++ +K+TD
Sbjct: 189 TVLRDLQLNNTKITD 203
>gi|344270426|ref|XP_003407045.1| PREDICTED: F-box/LRR-repeat protein 13 [Loxodonta africana]
Length = 680
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 127/463 (27%), Positives = 216/463 (46%), Gaps = 87/463 (18%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL- 77
L +L++ C LQ+L + P + D+ M I+ +L ++LS + +T+ + L
Sbjct: 178 LKPKTLKSVSHCRNLQELNVSDCPTLTDESMRHISEGCPGVLYLNLSNTGITNRTMRLLP 237
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFA----GL 130
++ NLQ+L +C + +D GL++L +G LT L I+ QG + A G+
Sbjct: 238 RNFHNLQNLSLAYCRKFTDKGLQYLNLGKGCHKLTYLDLSGCTQISVQGFRNIANSCSGI 297
Query: 131 INL------------VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
++L VK +E+C+RI V G I+D K LS
Sbjct: 298 MHLTINDMPTLTDKCVKALVEKCSRITS--VVFIGAPH-----------ISDCAFKALST 344
Query: 179 LTNLKSLQISCSK-VTDSGIAYL----KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
NL+ ++ +K +TDS ++ ++ + +++ +G +T L SLS L L L
Sbjct: 345 -CNLRKIRFEGNKRITDSCFKFIDKHYPNIRHIYMVDCKG--LTDGSLKSLSVLKQLTVL 401
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEG 292
NL C +G + ++G ++ D + T + LNL++C +GD
Sbjct: 402 NLANC------------VG---IGDVGLKQLLDGPVS-----TKIRELNLNNCIHLGDAS 441
Query: 293 LVNLTGLC-NLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
+V L+ C NL L L + + + G+ H+ + +L S++LS T IS+ L L+ L
Sbjct: 442 IVRLSERCPNLNYLNLRNCEHLTDLGIEHIVNIFSLVSVDLSGTVISNEGLMTLSRHKKL 501
Query: 351 KSLNL-DARQITDTGLAALT--SLTGLTHLDL-FGARITDSGAAYLRNF-KNLRSLEICG 405
K L+L + +ITD G+ A SL L HLD+ + +++D L + +L SL I G
Sbjct: 502 KELSLSECYKITDMGIQAFCKGSLI-LEHLDVSYCPQLSDEIIKALAIYCISLTSLSIAG 560
Query: 406 -GGLTDAGVK---------HIKDLSSLTLL------NLSQNCN 432
+TD+ ++ HI D+S LL NL + CN
Sbjct: 561 CPKITDSAMELLSAKCHYLHILDISGCILLTDQILENLQRGCN 603
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 31/163 (19%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL+SVDLSG+ +++ GL+ L L+ L + C +I+D
Sbjct: 476 SLVSVDLSGTVISNEGLMTLSRHKKLKELSLSECYKITD--------------------- 514
Query: 118 AITAQGMKAF-AGLINLVKLDLERCTRIHGGLVNLKGL--MKLESLNIKWCNCITDSDMK 174
G++AF G + L LD+ C ++ ++ + + L SL+I C ITDS M+
Sbjct: 515 ----MGIQAFCKGSLILEHLDVSYCPQLSDEIIKALAIYCISLTSLSIAGCPKITDSAME 570
Query: 175 PLSGLTN-LKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC 214
LS + L L IS C +TD + L +G +L +L + C
Sbjct: 571 LLSAKCHYLHILDISGCILLTDQILENLQRGCNQLRILKMRYC 613
>gi|281211117|gb|EFA85283.1| Histidine kinase A [Polysphondylium pallidum PN500]
Length = 1839
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 120/431 (27%), Positives = 204/431 (47%), Gaps = 65/431 (15%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFC 91
LQ++ L + V D + IA+ L++V L ++TD+ +IHL + C + +L + C
Sbjct: 1413 LQNINLNKCRAVTDDKIIAIANMQLPLVNVYLKKCNITDNAIIHLTQSCPKIAALQLSGC 1472
Query: 92 IQISDGGLEHLRGLSN---LTSLSFRRNNAITAQGM-KAFAGLINLVKLDL-ERCTRIHG 146
+ D + + +N L L +R +T+ + K F L N+ + L E +
Sbjct: 1473 KNLGDASINAI--ATNCLGLRELRMKRCPLVTSNSIDKMFRLLHNIHIVTLAESPMAVSD 1530
Query: 147 GLVNLKGLM--KLESLNIKWCNCITDSDMKPLSGLTN-LKSLQIS-CSKVTDSGIAYL-K 201
+ L G +++ +N+ + ITD + L TN ++ L IS C +TD GI ++ +
Sbjct: 1531 NTLRLMGKYCTEIQCVNVSHNSIITDVGLINLVKFTNTIQELNISQCVNITDIGIQHIAQ 1590
Query: 202 GLQKLTLLNLEGC-------PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
KL +L + G P+ +C D L L+++ C KI S
Sbjct: 1591 ACGKLRILRMSGLNNVTSLKPIGKSCAD-------LVELDISECH----------KISS- 1632
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG-LCNLKCLELSDTQV 312
+LG+ IT KG L S L C G+ D L++ G + + L + D
Sbjct: 1633 ---DLGY--IT-------KGCPKLTSFKLRRCYGLQDVSLLSEDGEIHAMSKLSVLDWSY 1680
Query: 313 GSSGLRHLSGLTN----LESINLSF-TGISDGSLRKLAG-LSSLKSLNLDAR-QITDTGL 365
G+ + + +T+ L S+N+S+ ++D S+ ++A LS+LK L +D+ ITD G+
Sbjct: 1681 GNIEFQTIHSITHSCKSLTSLNISYCKSLTDTSIERIASSLSNLKKLKMDSVVNITDDGI 1740
Query: 366 AALTSL---TGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421
AL+ + + L L G R I+D A Y+ F NL+ L + G +T AGV+ I S
Sbjct: 1741 KALSEAPIASSIEDLSLVGCRKISDVSAQYILRFHNLKKLSLGGCLMTTAGVESIA-AES 1799
Query: 422 LTLLNLS-QNC 431
L+ +S +NC
Sbjct: 1800 FELVKISIRNC 1810
>gi|343418611|emb|CCD19670.1| hypothetical protein, conserved in T. vivax [Trypanosoma vivax
Y486]
Length = 840
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 140/495 (28%), Positives = 229/495 (46%), Gaps = 44/495 (8%)
Query: 32 ALQDLCLGQYPGVNDKWM-DVIASQGSSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFN 89
LQ+LCL V+D ++ D+ + LS++ S + +TD S L ++ +L+ L+ N
Sbjct: 98 TLQELCLANV-NVDDAFVRDLTCHERLRRLSLN-SCTRITDVSPLARMR---SLEMLNLN 152
Query: 90 FCIQISDGGLEHLRGLSNLTSL-------------------SFRR---NNAITAQGMKAF 127
C I GL L GL+ L L RR N+ +
Sbjct: 153 DCTGIV-RGLHELCGLTTLQELYLPKVYVDDAFLRDLTCHERLRRLSLNSCTRITDVSPL 211
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
A + +L LDL C I GL L GL L+ L + W C+ ++ ++ L+ L+ L +
Sbjct: 212 ARMRSLEMLDLNGCIGIVRGLHELCGLTTLQELYL-WQLCVDNAFLRDLTCHERLRRLSL 270
Query: 188 -SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
SC+++TD ++ L ++ L +L+L C L L L +L L L + + D
Sbjct: 271 NSCTRITD--VSPLARMRSLEMLDLNDCTGIVRGLHELCGLTTLQELYLWQLCVDDAFLR 328
Query: 247 KFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
+ L+ L+L ITD + L + +LE+L+L+ C GL L GL L+ L
Sbjct: 329 DLTCHERLRRLSLNSCTRITD--VSPLARMRSLENLDLNDCTGIVRGLHVLCGLTTLQEL 386
Query: 306 ELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
L V + +R L+ L ++L S T I++ S LA + SL+ LNL+ G
Sbjct: 387 CLWQLCVDDAFVRDLTCHERLRRLSLNSCTRITNVS--PLARMRSLEILNLNGCTGIVRG 444
Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424
L L LT L L L+ + D+ L + LR L + V + + SL +
Sbjct: 445 LHVLCGLTTLQELYLWQLCVDDAFLRDLTCHERLRRLSL-NSCTRITDVSPLARMRSLEM 503
Query: 425 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC-KVT- 482
L+L+ C + L ++ GLT L L ++ + A LR L + LR L+L SC ++T
Sbjct: 504 LDLN-GCTGIVRGLHVLCGLTTLQELCLAEVPVNDALLRDLTCHERLRELSLNSCTRITD 562
Query: 483 ANDIKRLQSRDLPNL 497
+ + R++S ++ +L
Sbjct: 563 VSPLARMRSLEMLDL 577
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 145/496 (29%), Positives = 229/496 (46%), Gaps = 46/496 (9%)
Query: 32 ALQDLCLGQYPGVNDKWM-DVIASQGSSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFN 89
LQ+L L + V+D ++ D+ + LS++ S + +TD S L ++ +L+ LD N
Sbjct: 169 TLQELYLPKVY-VDDAFLRDLTCHERLRRLSLN-SCTRITDVSPLARMR---SLEMLDLN 223
Query: 90 FCIQISDGGLEHLRGLSNLTSL-------------------SFRR---NNAITAQGMKAF 127
CI I GL L GL+ L L RR N+ +
Sbjct: 224 GCIGIV-RGLHELCGLTTLQELYLWQLCVDNAFLRDLTCHERLRRLSLNSCTRITDVSPL 282
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
A + +L LDL CT I GL L GL L+ L + W C+ D+ ++ L+ L+ L +
Sbjct: 283 ARMRSLEMLDLNDCTGIVRGLHELCGLTTLQELYL-WQLCVDDAFLRDLTCHERLRRLSL 341
Query: 188 -SCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
SC+++TD S +A ++ L+ L +L C L L L +L L L + + D
Sbjct: 342 NSCTRITDVSPLARMRSLENL---DLNDCTGIVRGLHVLCGLTTLQELCLWQLCVDDAFV 398
Query: 246 EKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
+ L+ L+L IT+ + L + +LE LNL+ C GL L GL L+
Sbjct: 399 RDLTCHERLRRLSLNSCTRITN--VSPLARMRSLEILNLNGCTGIVRGLHVLCGLTTLQE 456
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
L L V + LR L+ L ++L S T I+D S LA + SL+ L+L+
Sbjct: 457 LYLWQLCVDDAFLRDLTCHERLRRLSLNSCTRITDVS--PLARMRSLEMLDLNGCTGIVR 514
Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
GL L LT L L L + D+ L + LR L + V + + SL
Sbjct: 515 GLHVLCGLTTLQELCLAEVPVNDALLRDLTCHERLRELSL-NSCTRITDVSPLARMRSLE 573
Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC-KVT 482
+L+L+ +C + L + GLT L L + + +A LR L + LR L+L SC ++T
Sbjct: 574 MLDLN-DCTGIVRGLHELCGLTTLQELCLWQLCVDNAFLRDLTCHERLRRLSLNSCTRIT 632
Query: 483 -ANDIKRLQSRDLPNL 497
+ + R++S ++ +L
Sbjct: 633 DVSPLARMRSLEMLDL 648
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 113/369 (30%), Positives = 170/369 (46%), Gaps = 12/369 (3%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCS 190
+L LDL CT I GL L GL L+ L + W C+ D+ ++ L+ L+ L + SC+
Sbjct: 3 SLEMLDLNDCTGIVRGLHVLCGLTTLQELCL-WQLCVDDALLRDLTCHERLRELSLNSCT 61
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
++TD ++ L ++ L +LNL C L L L +L L L + D +
Sbjct: 62 RITD--VSPLARMRSLEILNLNDCTGIVRGLHVLCGLTTLQELCLANVNVDDAFVRDLTC 119
Query: 251 IGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
L+ L+L ITD + L + +LE LNL+ C GL L GL L+ L L
Sbjct: 120 HERLRRLSLNSCTRITD--VSPLARMRSLEMLNLNDCTGIVRGLHELCGLTTLQELYLPK 177
Query: 310 TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
V + LR L+ L ++L S T I+D S LA + SL+ L+L+ GL L
Sbjct: 178 VYVDDAFLRDLTCHERLRRLSLNSCTRITDVS--PLARMRSLEMLDLNGCIGIVRGLHEL 235
Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
LT L L L+ + ++ L + LR L + V + + SL +L+L+
Sbjct: 236 CGLTTLQELYLWQLCVDNAFLRDLTCHERLRRLSL-NSCTRITDVSPLARMRSLEMLDLN 294
Query: 429 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
+C + L + GLT L L + + A LR L + LR L+L SC +
Sbjct: 295 -DCTGIVRGLHELCGLTTLQELYLWQLCVDDAFLRDLTCHERLRRLSLNSCTRITDVSPL 353
Query: 489 LQSRDLPNL 497
+ R L NL
Sbjct: 354 ARMRSLENL 362
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 143/495 (28%), Positives = 232/495 (46%), Gaps = 44/495 (8%)
Query: 32 ALQDLCLGQYPGVNDKWM-DVIASQGSSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFN 89
LQ+L L Q V+D ++ D+ + LS++ S + +TD S L ++ +L++LD N
Sbjct: 311 TLQELYLWQL-CVDDAFLRDLTCHERLRRLSLN-SCTRITDVSPLARMR---SLENLDLN 365
Query: 90 FCIQISDGGLEHLRGLSNLTSL---------SFRR-------------NNAITAQGMKAF 127
C I GL L GL+ L L +F R N+ +
Sbjct: 366 DCTGIV-RGLHVLCGLTTLQELCLWQLCVDDAFVRDLTCHERLRRLSLNSCTRITNVSPL 424
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
A + +L L+L CT I GL L GL L+ L + W C+ D+ ++ L+ L+ L +
Sbjct: 425 ARMRSLEILNLNGCTGIVRGLHVLCGLTTLQELYL-WQLCVDDAFLRDLTCHERLRRLSL 483
Query: 188 -SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
SC+++TD ++ L ++ L +L+L GC L L L +L L L ++D
Sbjct: 484 NSCTRITD--VSPLARMRSLEMLDLNGCTGIVRGLHVLCGLTTLQELCLAEVPVNDALLR 541
Query: 247 KFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
+ L+ L+L ITD + L + +LE L+L+ C GL L GL L+ L
Sbjct: 542 DLTCHERLRELSLNSCTRITD--VSPLARMRSLEMLDLNDCTGIVRGLHELCGLTTLQEL 599
Query: 306 ELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
L V ++ LR L+ L ++L S T I+D S LA + SL+ L+L+ G
Sbjct: 600 CLWQLCVDNAFLRDLTCHERLRRLSLNSCTRITDVS--PLARMRSLEMLDLNGCIGIVRG 657
Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424
L L LT L L L+ + ++ L + LR L + V + + SL +
Sbjct: 658 LHELCGLTTLQELYLWQLCVDNAFLRDLTCHERLRRLSL-NSCTRITDVSPLARMRSLEM 716
Query: 425 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC-KVT- 482
L+L+ +C + L + GLT L L + + A LR L + LR L+L SC ++T
Sbjct: 717 LDLN-DCTGIVRGLHELCGLTTLQELYLWQLCVDDAFLRDLTCHERLRRLSLNSCTRITD 775
Query: 483 ANDIKRLQSRDLPNL 497
+ + R++S ++ +L
Sbjct: 776 VSPLARMRSLEMLDL 790
>gi|385800049|ref|YP_005836453.1| hypothetical protein [Halanaerobium praevalens DSM 2228]
gi|309389413|gb|ADO77293.1| conserved repeat domain protein [Halanaerobium praevalens DSM 2228]
Length = 2607
Score = 80.1 bits (196), Expect = 3e-12, Method: Composition-based stats.
Identities = 110/333 (33%), Positives = 155/333 (46%), Gaps = 47/333 (14%)
Query: 32 ALQDLCLGQYPGVNDK----WMDVIASQGSSLLSVDLS-GSDVTDSGLIHLKDCSNLQSL 86
A +D YPG+NDK + VI S+L L G D G I L + NL +L
Sbjct: 1017 AFKDQSGNAYPGMNDKTSWNFKTVINIPDSNLKQQILDRGIDNNGDGEISLSESVNLYTL 1076
Query: 87 DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG 146
+F +ISD L GL + TSL KL L +I
Sbjct: 1077 K-SFYTEISD-----LSGLEHFTSLD----------------------KLALYGGKKI-S 1107
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
L L+ L L SL + N I + D L+ LTNL L +S +K++D I+ L L KL
Sbjct: 1108 DLSPLQNLTNLNSLTLTE-NVINNIDY--LANLTNLTRLDLSSNKISD--ISVLANLTKL 1162
Query: 207 TLLNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
T L L +T + L L L L +L+L ++S+ + S + L L+LG +
Sbjct: 1163 TELVLGSNIITDESDLSVLENLTELEHLSLEENEISN--IDSLSNLSKLNYLHLGSTNVE 1220
Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
D + LK LT L LNL+S I DE L L+ +L L L + S + ++ LTN
Sbjct: 1221 D--ISSLKNLTALNFLNLNSTYINDEDLTILSNFKSLTELYLQSSNDKISDISVVADLTN 1278
Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSL-NLDA 357
L+ + L + ISD +R L+ L+ L SL NL+A
Sbjct: 1279 LKYLYLGYNEISD--IRALSDLTKLTSLYNLNA 1309
Score = 60.8 bits (146), Expect = 2e-06, Method: Composition-based stats.
Identities = 82/280 (29%), Positives = 126/280 (45%), Gaps = 38/280 (13%)
Query: 176 LSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
LS NL +L+ ++++D SG+ + L KL L + LS L +L N
Sbjct: 1067 LSESVNLYTLKSFYTEISDLSGLEHFTSLDKLALYG-------GKKISDLSPLQNL--TN 1117
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGL 293
LN L+++ V+N + +L LTNL L+L S I D L
Sbjct: 1118 LNSLTLTEN------------VIN---------NIDYLANLTNLTRLDLSSNKISDISVL 1156
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
NLT L L + S+ S L L LT LE ++L IS+ + L+ LS L L
Sbjct: 1157 ANLTKLTEL--VLGSNIITDESDLSVLENLTELEHLSLEENEISN--IDSLSNLSKLNYL 1212
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 413
+L + + D +++L +LT L L+L I D L NFK+L L + + +
Sbjct: 1213 HLGSTNVED--ISSLKNLTALNFLNLNSTYINDEDLTILSNFKSLTELYLQSSNDKISDI 1270
Query: 414 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
+ DL++L L L N + L ++ LT L +LN +
Sbjct: 1271 SVVADLTNLKYLYLGYNEISDIRALSDLTKLTSLYNLNAN 1310
Score = 55.8 bits (133), Expect = 4e-05, Method: Composition-based stats.
Identities = 68/222 (30%), Positives = 107/222 (48%), Gaps = 14/222 (6%)
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS--SGLRHLSGLTNLESINLSFTGI 336
ES+NL + + +L+GL + L+ G S L L LTNL S+ L+ I
Sbjct: 1069 ESVNLYTLKSFYTEISDLSGLEHFTSLDKLALYGGKKISDLSPLQNLTNLNSLTLTENVI 1128
Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNF 395
++ + LA L++L L+L + +I+D ++ L +LT LT L L ITD S + L N
Sbjct: 1129 NN--IDYLANLTNLTRLDLSSNKISD--ISVLANLTKLTELVLGSNIITDESDLSVLENL 1184
Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 455
L L L + + +I LS+L+ LN + + + + LT L LN++++
Sbjct: 1185 TELEHLS-----LEENEISNIDSLSNLSKLNYLHLGSTNVEDISSLKNLTALNFLNLNST 1239
Query: 456 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 497
I L L K+L L L+S +DI + DL NL
Sbjct: 1240 YINDEDLTILSNFKSLTELYLQSSNDKISDISVVA--DLTNL 1279
>gi|300868028|ref|ZP_07112666.1| Small GTP-binding protein (fragment) [Oscillatoria sp. PCC 6506]
gi|300333948|emb|CBN57844.1| Small GTP-binding protein (fragment) [Oscillatoria sp. PCC 6506]
Length = 376
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 104/340 (30%), Positives = 169/340 (49%), Gaps = 50/340 (14%)
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
+A A L L +LDL+ C ++ + L +L+ LN+ N +T+ + ++ L+ L++
Sbjct: 37 EAIATLTQLQRLDLD-CNQLTKVPEAIASLSQLQILNLS-NNKLTEVP-EAIASLSQLQT 93
Query: 185 LQISCSKVTD--SGIAYLKGLQKLTLLN--LEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
L + +K+T+ IA L LQKL L N L P +++++L L LNLN QL
Sbjct: 94 LNLIYNKLTEVPEAIATLTQLQKLYLSNNQLTQVP------EAIASLSQLQTLNLNFNQL 147
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTG 298
++ E + + L+ LNL +N++T E + LT LE L L++ + E + +LT
Sbjct: 148 TE-VPEAIASLSQLRRLNLSYNQLT-EVPETIASLTQLEWLYLNNNQLRKVPEAIASLT- 204
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L+ L LSD + T + + +A LS L+SLNL
Sbjct: 205 --QLQRLSLSDNE---------------------LTAVPEA----IASLSQLRSLNLSNN 237
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
Q+T+ A+ SLT L L L G ++T+ A + + L+ L + G LT A + I
Sbjct: 238 QLTELP-EAIASLTQLQELYLVGNQLTELPEA-IASLTQLQELYLVGNELT-AVPEAIAS 294
Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
L+ L L+LS N LT E I+ LT L L++S +++T
Sbjct: 295 LTQLQRLSLSDN-ELT-AVPEAIASLTHLQGLDLSYNQLT 332
>gi|84043398|ref|XP_951489.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|33348218|gb|AAQ15545.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|62359994|gb|AAX80418.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei]
Length = 1110
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 132/492 (26%), Positives = 211/492 (42%), Gaps = 88/492 (17%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------GGLEHL---------RGLSNL 108
SG V D+ L L DC +L+ L+ ++CIQ++D +E L RG+ +
Sbjct: 303 SGVPVEDNCLKDLCDCGSLERLNISYCIQLTDINPLSNATAIEELNLNGCRRITRGIGVV 362
Query: 109 TSLS-----FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
+L ++ ++ + + +LV+L LE C + G + L L+ LE LN+
Sbjct: 363 WALPKLRVLHMKDVHLSEPSLDSVGTGGSLVRLSLENC-KGFGDVKPLSNLVTLEELNLH 421
Query: 164 WCNCITDSDMKPLSGLTNLKSLQI--------------------------SCSKVTD-SG 196
+C+ +T S M L L L+ L + C K+T S
Sbjct: 422 YCDKVT-SGMGTLGRLPQLRVLDLGRTQVDNNSLENICTSSIPLVSLNLSHCKKITSISA 480
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
IA L L++L + N C VT+ + L L L+ +++D+ S+ SL
Sbjct: 481 IASLTALEELNIDN--SCNVTSG-WNVFGTLHQLRVATLSNTRINDENIRHVSECKSLNT 537
Query: 257 LNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
LNL F +ITD + L +T LE LNLD C +G+ L L + L + + +G
Sbjct: 538 LNLAFCKDITD--VTALSKITMLEELNLDCCPNIRKGIETLGKLPKARILSMKECYMGDG 595
Query: 316 GLRHLSGLTNLES---INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
+ S L N +S +NL + + S++ L+ +++L+ L LD + + + S +
Sbjct: 596 YAQQCSILGNSKSLVKLNLERS-MGFISVKALSNIATLEELVLDHAE----EVCCIPSFS 650
Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
L L + + TD G +T K+I + SL LNLS
Sbjct: 651 CLPRLRVLNLKYTD-----------------INGDVT----KNISESKSLRSLNLSHCKW 689
Query: 433 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS- 491
+TD + ++S L+ L LNV+ G L L LR L + A DI L S
Sbjct: 690 VTD--ISVLSSLSTLEELNVNCCNGIRKGWESLGKLPLLRVAILSDTNIAAKDIACLSSC 747
Query: 492 RDLPNLVSFRPE 503
+ L L FR E
Sbjct: 748 KTLVKLKFFRCE 759
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 124/428 (28%), Positives = 193/428 (45%), Gaps = 60/428 (14%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL---DLERCTRIHG--GLVNLKGL-- 154
L+ L L L FR NN I + ++ L +L D + T I G L NLK L
Sbjct: 173 LKRLHMLKRLCFRSNN-IDNNDARHLFNIVTLEELAITDTMQLTNIRGISRLTNLKCLEL 231
Query: 155 ----------------MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGI 197
KL L++ CN ITD+ P+S L L+ L + SC +T GI
Sbjct: 232 NSTDIDDSCIGEISACAKLSKLSVSECNNITDA--TPISQLAALEELNLNSCYHIT-KGI 288
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSD-------------- 242
L L +L +L+L G PV CL L GSL LN++ C QL+D
Sbjct: 289 ETLGMLLRLRMLDLSGVPVEDNCLKDLCDCGSLERLNISYCIQLTDINPLSNATAIEELN 348
Query: 243 -DGCEKFSK-------IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGL 293
+GC + ++ + L+VL++ +++ L + +L L+L++C G GD +
Sbjct: 349 LNGCRRITRGIGVVWALPKLRVLHMKDVHLSEPSLDSVGTGGSLVRLSLENCKGFGD--V 406
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS-SLKS 352
L+ L L+ L L +SG+ L L L ++L T + + SL + S L S
Sbjct: 407 KPLSNLVTLEELNLHYCDKVTSGMGTLGRLPQLRVLDLGRTQVDNNSLENICTSSIPLVS 466
Query: 353 LNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
LNL ++I T ++A+ SLT L L++ + SG LR + + D
Sbjct: 467 LNLSHCKKI--TSISAIASLTALEELNIDNSCNVTSGWNVFGTLHQLRVATLSNTRINDE 524
Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 471
++H+ + SL LNL+ ++TD T +S +T L LN+ G+ L L
Sbjct: 525 NIRHVSECKSLNTLNLAFCKDITDVT--ALSKITMLEELNLDCCPNIRKGIETLGKLPKA 582
Query: 472 RSLTLESC 479
R L+++ C
Sbjct: 583 RILSMKEC 590
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 116/445 (26%), Positives = 193/445 (43%), Gaps = 65/445 (14%)
Query: 98 GLEHLRGLSNLTSLS-FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLM 155
G ++ LSN+ +L ++A + +F+ L L L+L + T I+G + N+
Sbjct: 619 GFISVKALSNIATLEELVLDHAEEVCCIPSFSCLPRLRVLNL-KYTDINGDVTKNISESK 677
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L SLN+ C +TD + LS L+ L+ L ++C G L L L + L
Sbjct: 678 SLRSLNLSHCKWVTD--ISVLSSLSTLEELNVNCCNGIRKGWESLGKLPLLRVAILSDTN 735
Query: 216 VTAACLDSLSALGSLFYLNLNRCQ-LSD-------------------DGCEKFSKIGS-- 253
+ A + LS+ +L L RC+ LSD DG + + +G+
Sbjct: 736 IAAKDIACLSSCKTLVKLKFFRCEKLSDVTVVYKIQSLEELIVRSCSDGLKGLNDLGTLP 795
Query: 254 --------------LKVLNLGFN------------EITDECLVHLKGLTNLESLNLDSCG 287
+ V ++G + E+TD + L +T+LE L+L CG
Sbjct: 796 RLRFLLLRNVRGSDISVESIGTSKSLVRLHIEMRKELTD--ITPLSNITSLEELSLRECG 853
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAG 346
EG+ L L LK L+L + + +S L + ++ S+NL+ + ++D S ++
Sbjct: 854 DNLEGVGTLGKLPRLKSLDLGLSDISNSALNDIFLSRSITSLNLASSWKLTDIS--HISN 911
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAAYLRNFKNLRSLEICG 405
L++L+ LNL +G AL+ L L L+L A +T Y+ K+L +L +
Sbjct: 912 LTALEELNLRRCYPITSGWEALSELPRLRVLNLESASVTTRYDGYYISRCKSLVTLNLES 971
Query: 406 GGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
+TDA + +IK L L + C + + L L LN+ S I LR
Sbjct: 972 CDMTDASCLANIKTLEELHI----GRCKELRRGFSPLFTLPRLRILNLICSLIKDEDLRE 1027
Query: 465 LKPLKNLRSLTLESCKVTANDIKRL 489
++P + L L C+ NDI L
Sbjct: 1028 IQPPHTIEELNLSYCE-NLNDITPL 1051
>gi|421897504|ref|ZP_16327872.1| type III effector protein gala5 [Ralstonia solanacearum MolK2]
gi|206588710|emb|CAQ35673.1| type III effector protein gala5 [Ralstonia solanacearum MolK2]
Length = 533
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 136/291 (46%), Gaps = 1/291 (0%)
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+L S + V G+ L + LT L+L + A L A L LN+NR ++
Sbjct: 216 TLNASRNGVGGEGVRALVDCKTLTSLDLSENGLGDAEAQRLGASERLTTLNVNRNRIDVQ 275
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
G + +L L++G N I D + L L +LN++ G+G G+ L L
Sbjct: 276 GARALADCKTLTSLDIGGNSIGDAGVEALLANAQLTTLNVERAGVGAHGVQALADSKTLT 335
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
L + + +G G + L+ T+L +++ GI + LA + L +LNL I D
Sbjct: 336 SLRIDNNNIGDEGAKTLAASTSLTTLHSESNGIGLAGAKALAANTRLTTLNLGHNGIGDA 395
Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
G A + T L L + ++D+GA L K L +L+ + DAG + + +LT
Sbjct: 396 GAQAWLANTTLVSLSVRRNGLSDAGATRLAASKTLTTLDAGDNAIKDAGARALAANRTLT 455
Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
L++S N + + ++ T L SL++ N+R+ AG+R L + L SL
Sbjct: 456 TLDVSSN-EIGNAGARALAANTRLASLDLRNNRMLEAGVRALLVNRTLSSL 505
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 125/266 (46%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N + D++ + L L +L ++ +++ G L + LT L++ G + A +++L
Sbjct: 246 NGLGDAEAQRLGASERLTTLNVNRNRIDVQGARALADCKTLTSLDIGGNSIGDAGVEALL 305
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
A L LN+ R + G + + +L L + N I DE L T+L +L+ +S
Sbjct: 306 ANAQLTTLNVERAGVGAHGVQALADSKTLTSLRIDNNNIGDEGAKTLAASTSLTTLHSES 365
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
GIG G L L L L +G +G + T L S+++ G+SD +LA
Sbjct: 366 NGIGLAGAKALAANTRLTTLNLGHNGIGDAGAQAWLANTTLVSLSVRRNGLSDAGATRLA 425
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
+L +L+ I D G AL + LT LD+ I ++GA L L SL++
Sbjct: 426 ASKTLTTLDAGDNAIKDAGARALAANRTLTTLDVSSNEIGNAGARALAANTRLASLDLRN 485
Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNC 431
+ +AGV+ + +L+ L +S NC
Sbjct: 486 NRMLEAGVRALLVNRTLSSLGVSFNC 511
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 115/294 (39%), Gaps = 55/294 (18%)
Query: 44 VNDKWMDVIASQG----SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL 99
VN +DV ++ +L S+D+ G+ I D G+
Sbjct: 267 VNRNRIDVQGARALADCKTLTSLDIGGNS-------------------------IGDAGV 301
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
E L + LT+L+ R + A G++A A L L ++
Sbjct: 302 EALLANAQLTTLNVER-AGVGAHGVQALADSKTLTSLRIDN------------------- 341
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
N I D K L+ T+L +L + + +G L +LT LNL + A
Sbjct: 342 ------NNIGDEGAKTLAASTSLTTLHSESNGIGLAGAKALAANTRLTTLNLGHNGIGDA 395
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+ A +L L++ R LSD G + + +L L+ G N I D L L
Sbjct: 396 GAQAWLANTTLVSLSVRRNGLSDAGATRLAASKTLTTLDAGDNAIKDAGARALAANRTLT 455
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
+L++ S IG+ G L L L+L + ++ +G+R L L S+ +SF
Sbjct: 456 TLDVSSNEIGNAGARALAANTRLASLDLRNNRMLEAGVRALLVNRTLSSLGVSF 509
>gi|12581504|gb|AAG59625.1| GU1 [Trypanosoma brucei]
gi|261333153|emb|CBH16148.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 846
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 115/444 (25%), Positives = 212/444 (47%), Gaps = 31/444 (6%)
Query: 49 MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL 108
++ I+S GS L+ +DL + V D+G C LQ L + C ++SD + L L+ L
Sbjct: 338 VEFISSLGS-LVELDLRDNWVGDAGCASFVHCRQLQQLKLSCCRRVSD--VRWLAALTCL 394
Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
+L N + ++ +++ LV+L++ C + + L L L+ L++ + I
Sbjct: 395 RTLDLSHTN-VRSRWLESLRACRYLVELNVAYCRDV-VEVSFLSELRLLKHLDLSGTD-I 451
Query: 169 TDSDMKPL---SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+ ++ P+ GLT L L CS V D + +L+ L++L L+ E + A + +
Sbjct: 452 GEQNLDPIGQCEGLTFL--LLKDCSSVKD--LHFLETLRELVKLDTERTGIMDANVCQVV 507
Query: 226 ALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
A L +L+ C L+D C + +LK L+L +T+E + L +LE +++
Sbjct: 508 ACKKLEFLSFRYCHLLTDVKC--LEGLRNLKTLDLAGTNVTNEGISSLPKCVSLEYVDVS 565
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI--SDGSLR 342
C + L L L NL+ ++ Q+ + + L+G +L + L+ + + G +R
Sbjct: 566 ECCLITH-LEFLRPLPNLQ--QVVADQMNLTDIGGLTGAPSLRRVTLNESKRLGTVGEVR 622
Query: 343 KLAGLSSLKSLNLDARQITDTGLAA-LTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRS 400
L L+ L+L I++ G+ + L S L HLD+ +T+ A L NLR
Sbjct: 623 ----LPYLQELSLRKSTISNAGIRSLLASCRSLQHLDMQHCHSVTELSA--LSQLPNLRE 676
Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
L + +T + HI +L L +++ ++TD + +S L L +++S + +T+
Sbjct: 677 LLLRNIRVTGEFMTHIASCVNLRKLQMTECADITD--VNCLSALQSLEDIDLSRTSVTTE 734
Query: 461 GLRHLKPLKNLRSLTLESCKVTAN 484
G++ L LR L L C+ N
Sbjct: 735 GIKGLSKCYALRKLNLSECRYVTN 758
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 131/522 (25%), Positives = 226/522 (43%), Gaps = 114/522 (21%)
Query: 27 AFRDC-ALQDLCLGQYPGVND-KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
+F C LQ L L V+D +W+ + + L ++DLS ++V L L+ C L
Sbjct: 364 SFVHCRQLQQLKLSCCRRVSDVRWLAAL----TCLRTLDLSHTNVRSRWLESLRACRYLV 419
Query: 85 SLDFNFC---IQIS----------------DGGLEHLRGLSNLTSLSFRR-NNAITAQGM 124
L+ +C +++S D G ++L + L+F + + + +
Sbjct: 420 ELNVAYCRDVVEVSFLSELRLLKHLDLSGTDIGEQNLDPIGQCEGLTFLLLKDCSSVKDL 479
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
L LVKLD ER + + + KLE L+ ++C+ +TD +K L GL NLK+
Sbjct: 480 HFLETLRELVKLDTERTGIMDANVCQVVACKKLEFLSFRYCHLLTD--VKCLEGLRNLKT 537
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L ++ + VT+ GI+ SL SL Y++++ C L
Sbjct: 538 LDLAGTNVTNEGIS------------------------SLPKCVSLEYVDVSECCL---- 569
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
+ +L F L+ L NL+ + D + D G LTG +L+
Sbjct: 570 -----------ITHLEF----------LRPLPNLQQVVADQMNLTDIG--GLTGAPSLRR 606
Query: 305 LELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL-NLDARQI-T 361
+ L++++ +G+ G L L+ ++L + IS+ +R L L+S +SL +LD + +
Sbjct: 607 VTLNESKRLGTVGEVRLP---YLQELSLRKSTISNAGIRSL--LASCRSLQHLDMQHCHS 661
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI--CGG------------- 406
T L+AL+ L L L L R+T ++ + NLR L++ C
Sbjct: 662 VTELSALSQLPNLRELLLRNIRVTGEFMTHIASCVNLRKLQMTECADITDVNCLSALQSL 721
Query: 407 --------GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
+T G+K + +L LNLS+ +T+ + + L L L++ + +T
Sbjct: 722 EDIDLSRTSVTTEGIKGLSKCYALRKLNLSECRYVTN--VNCLGKLPFLRELHLEKTNVT 779
Query: 459 SAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 500
G+ L L +L L C N ++RL S LP+L F
Sbjct: 780 DKGIAGLSNCIQLETLALTKCSRITN-VERLHS-SLPHLEEF 819
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 111/441 (25%), Positives = 185/441 (41%), Gaps = 66/441 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+ L + +++ + + +C+NL+ + + C + LE L LT LS N
Sbjct: 206 LRSLTLFATPLSNQIMSYFCECTNLERVVVDSCCGLV--SLECFAALQRLTHLSVL-NCT 262
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT +G+ + +L + L+ C MKL SLN L
Sbjct: 263 ITDEGLPPISKCFSLQYVMLDNC-------------MKLRSLNC-------------LGS 296
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L NL++L +S +++ + G+ L+ L+ L +L A ++ +S+LGSL L+L
Sbjct: 297 LRNLRTLIVSRNRIPEEGVQGLRKLRDLEVLRFSVFNRPTA-VEFISSLGSLVELDLRDN 355
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ D GC F VH + L L+ SC + L
Sbjct: 356 WVGDAGCASF---------------------VHCRQLQQLKL----SCCRRVSDVRWLAA 390
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA 357
L L+ L+LS T V S L L L +N+++ + + S L+ L LK L+L
Sbjct: 391 LTCLRTLDLSHTNVRSRWLESLRACRYLVELNVAYCRDVVEVSF--LSELRLLKHLDLSG 448
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
I + L + GLT L L + +L + L L+ G+ DA V +
Sbjct: 449 TDIGEQNLDPIGQCEGLTFL-LLKDCSSVKDLHFLETLRELVKLDTERTGIMDANVCQVV 507
Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL- 476
L L+ LTD ++ + GL L +L+++ + +T+ G+ L +L + +
Sbjct: 508 ACKKLEFLSFRYCHLLTD--VKCLEGLRNLKTLDLAGTNVTNEGISSLPKCVSLEYVDVS 565
Query: 477 ESCKVTANDIKRLQSRDLPNL 497
E C +T + R LPNL
Sbjct: 566 ECCLITHLEFL----RPLPNL 582
>gi|149178815|ref|ZP_01857396.1| serine/threonine protein kinase [Planctomyces maris DSM 8797]
gi|148842356|gb|EDL56738.1| serine/threonine protein kinase [Planctomyces maris DSM 8797]
Length = 1189
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 96/180 (53%), Gaps = 12/180 (6%)
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFG 381
LT++E IN+ ++D L L G +L+ +NL + + TD GLA L+ GL LDL+G
Sbjct: 547 LTHVELINMK--KVTDTGLAALRGTKNLRFVNLAYSPEFTDAGLAHLSDNRGLQRLDLWG 604
Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT-----LLNLSQNCNLTDK 436
IT G Y +F +LR L + L+ + +K +SL +L+L+Q D
Sbjct: 605 TNITKQGLEYFTDFPDLRDLRLGDTQLSAEDLSILKRYASLQKLELLMLSLTQA---DDS 661
Query: 437 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 496
TL ++SG + L LN+ + I GL L+ +NLR+L L VT I+RL ++ LP
Sbjct: 662 TLAILSGASQLGQLNLEQTNINDVGLESLEQNRNLRNLYLNKTPVTTEGIRRL-AQALPE 720
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 113/260 (43%), Gaps = 20/260 (7%)
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+N +++D G +L+ +NL ++ E TD L HL L+ L+L I +GL
Sbjct: 553 INMKKVTDTGLAALRGTKNLRFVNLAYSPEFTDAGLAHLSDNRGLQRLDLWGTNITKQGL 612
Query: 294 VNLTGLCNLKCLELSDTQVGS---SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
T +L+ L L DTQ+ + S L+ + L LE + LS T D +L L+G S L
Sbjct: 613 EYFTDFPDLRDLRLGDTQLSAEDLSILKRYASLQKLELLMLSLTQADDSTLAILSGASQL 672
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR--------NFKNLRSLE 402
LNL+ I D GL +L L +L L +T G L ++ L+
Sbjct: 673 GQLNLEQTNINDVGLESLEQNRNLRNLYLNKTPVTTEGIRRLAQALPECDIDWSELKKTS 732
Query: 403 ICGGGLT-DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-- 459
G T DAG + D + Q ++ K +E+ G G + + N +
Sbjct: 733 TSNGRWTPDAGQQKFFD-EVARMKATDQVVAVSQKLMEVNPGFDGKLKETIENGHVVGLT 791
Query: 460 --AG--LRHLKPLKNLRSLT 475
AG + + P++ L LT
Sbjct: 792 FLAGDHIAEIWPVRALSDLT 811
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 7/172 (4%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTDSGIAYLKGLQKLTLLNLE 212
L +E +N+K +TD+ + L G NL+ + ++ S + TD+G+A+L + L L+L
Sbjct: 547 LTHVELINMK---KVTDTGLAALRGTKNLRFVNLAYSPEFTDAGLAHLSDNRGLQRLDLW 603
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC---EKFSKIGSLKVLNLGFNEITDECL 269
G +T L+ + L L L QLS + ++++ + L++L L + D L
Sbjct: 604 GTNITKQGLEYFTDFPDLRDLRLGDTQLSAEDLSILKRYASLQKLELLMLSLTQADDSTL 663
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
L G + L LNL+ I D GL +L NL+ L L+ T V + G+R L+
Sbjct: 664 AILSGASQLGQLNLEQTNINDVGLESLEQNRNLRNLYLNKTPVTTEGIRRLA 715
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 23/182 (12%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
VTD+GL L+ NL+ ++ + + +D GL HL L L N IT QG++ F
Sbjct: 558 VTDTGLAALRGTKNLRFVNLAYSPEFTDAGLAHLSDNRGLQRLDLWGTN-ITKQGLEYFT 616
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
+L L L G L E L+I +K + L L+ L +S
Sbjct: 617 DFPDLRDLRL--------GDTQLSA----EDLSI----------LKRYASLQKLELLMLS 654
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
++ DS +A L G +L LNLE + L+SL +L L LN+ ++ +G +
Sbjct: 655 LTQADDSTLAILSGASQLGQLNLEQTNINDVGLESLEQNRNLRNLYLNKTPVTTEGIRRL 714
Query: 249 SK 250
++
Sbjct: 715 AQ 716
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 111/450 (24%), Positives = 173/450 (38%), Gaps = 90/450 (20%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG--- 123
+ TD+GL HL D LQ LD + I+ GLE+ +L L + ++A+
Sbjct: 581 PEFTDAGLAHLSDNRGLQRLDL-WGTNITKQGLEYFTDFPDLRDLRL-GDTQLSAEDLSI 638
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+K +A L L L L L L G +L LN++ N I D ++ L NL+
Sbjct: 639 LKRYASLQKLELLMLSLTQADDSTLAILSGASQLGQLNLEQTN-INDVGLESLEQNRNLR 697
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS---------ALGSLFYLN 234
+L ++ + VT GI L L C + + L S A F+
Sbjct: 698 NLYLNKTPVTTEGIRRLAQ-------ALPECDIDWSELKKTSTSNGRWTPDAGQQKFFDE 750
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV--HLKGLTNLESLNLDSCGIGDEG 292
+ R + +D K L +N GF+ E + H+ GLT L ++
Sbjct: 751 VARMKATDQVVAVSQK---LMEVNPGFDGKLKETIENGHVVGLTFLAGDHIAEIW----P 803
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
+ L+ L +L C G + L H KL LS L
Sbjct: 804 VRALSDLTSLVC--------GGNHLTH----------------------GKLTDLSPLVG 833
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
L L I+++ ++ LT L G+ L+GA + L + L+ L +
Sbjct: 834 LPLTKMDISNSSVSDLTPLKGMKLAHLYGAHTRIKDLSPLADMP-LKVLFLWSS------ 886
Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG--LVSLNVSNSRITS----------- 459
H+ DLS L + L+ N NL + +S L G L L V + + S
Sbjct: 887 -PHVSDLSPLKGMRLT-NLNLDFTQVADLSPLQGMDLTHLAVHQTHVRSLLPLSGMPLQA 944
Query: 460 -----AGLRHLKPLK--NLRSLTLESCKVT 482
G+ L PLK L +L +E+ +V+
Sbjct: 945 LYCSNTGISDLSPLKEAELTTLHIENTQVS 974
>gi|87311421|ref|ZP_01093541.1| hypothetical protein DSM3645_25297 [Blastopirellula marina DSM
3645]
gi|87285833|gb|EAQ77747.1| hypothetical protein DSM3645_25297 [Blastopirellula marina DSM
3645]
Length = 192
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 74/135 (54%), Gaps = 1/135 (0%)
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
+E+SD V + L+ LS T L+ I L T ++D + L L L+ +NL ITD
Sbjct: 35 SIEVSDRTVSPAELQLLSRATQLQRIRLDQTPLADPAAAVLGALPELQFVNLPQADITDA 94
Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
GLA + L LT L + +TD+G A LR+ +LR L + LTDA ++HI +++SL
Sbjct: 95 GLAEIAKLPQLTQLRIGSPHLTDAGIAALRDNPSLRFLHLLQTPLTDAALEHIAEINSLE 154
Query: 424 LLNLSQNCNLTDKTL 438
L Q N+T+ L
Sbjct: 155 SFYLDQ-TNITEPGL 168
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 70/139 (50%), Gaps = 1/139 (0%)
Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+SI +S +S L+ L+ + L+ + LD + D A L +L L ++L A ITD
Sbjct: 34 DSIEVSDRTVSPAELQLLSRATQLQRIRLDQTPLADPAAAVLGALPELQFVNLPQADITD 93
Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 446
+G A + L L I LTDAG+ ++D SL L+L Q LTD LE I+ +
Sbjct: 94 AGLAEIAKLPQLTQLRIGSPHLTDAGIAALRDNPSLRFLHLLQTP-LTDAALEHIAEINS 152
Query: 447 LVSLNVSNSRITSAGLRHL 465
L S + + IT GL L
Sbjct: 153 LESFYLDQTNITEPGLAKL 171
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 73/148 (49%), Gaps = 1/148 (0%)
Query: 150 NLKGLMKLESLNIKWCN-CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
L+ ++ ES +I+ + ++ ++++ LS T L+ +++ + + D A L L +L
Sbjct: 24 QLRQVIAGESDSIEVSDRTVSPAELQLLSRATQLQRIRLDQTPLADPAAAVLGALPELQF 83
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
+NL +T A L ++ L L L + L+D G SL+ L+L +TD
Sbjct: 84 VNLPQADITDAGLAEIAKLPQLTQLRIGSPHLTDAGIAALRDNPSLRFLHLLQTPLTDAA 143
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNL 296
L H+ + +LES LD I + GL L
Sbjct: 144 LEHIAEINSLESFYLDQTNITEPGLAKL 171
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 61/129 (47%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
V+ A L LS L + L++ L+D + L+ +NL +ITD L + L
Sbjct: 43 VSPAELQLLSRATQLQRIRLDQTPLADPAAAVLGALPELQFVNLPQADITDAGLAEIAKL 102
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
L L + S + D G+ L +L+ L L T + + L H++ + +LES L T
Sbjct: 103 PQLTQLRIGSPHLTDAGIAALRDNPSLRFLHLLQTPLTDAALEHIAEINSLESFYLDQTN 162
Query: 336 ISDGSLRKL 344
I++ L KL
Sbjct: 163 ITEPGLAKL 171
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%)
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
S+ L+ + L + D L L L+ +NL I D GL + L L L +
Sbjct: 51 LSRATQLQRIRLDQTPLADPAAAVLGALPELQFVNLPQADITDAGLAEIAKLPQLTQLRI 110
Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
+ +G+ L +L ++L T ++D +L +A ++SL+S LD IT+ GLA
Sbjct: 111 GSPHLTDAGIAALRDNPSLRFLHLLQTPLTDAALEHIAEINSLESFYLDQTNITEPGLAK 170
Query: 368 LTSLTGLTHL 377
L H+
Sbjct: 171 LIERRPQLHV 180
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 64/137 (46%)
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
S+++S V+ + + L +L + L+ P+ L AL L ++NL + ++D
Sbjct: 35 SIEVSDRTVSPAELQLLSRATQLQRIRLDQTPLADPAAAVLGALPELQFVNLPQADITDA 94
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
G + +K+ L L +G +TD + L+ +L L+L + D L ++ + +L+
Sbjct: 95 GLAEIAKLPQLTQLRIGSPHLTDAGIAALRDNPSLRFLHLLQTPLTDAALEHIAEINSLE 154
Query: 304 CLELSDTQVGSSGLRHL 320
L T + GL L
Sbjct: 155 SFYLDQTNITEPGLAKL 171
>gi|290983780|ref|XP_002674606.1| predicted protein [Naegleria gruberi]
gi|284088197|gb|EFC41862.1| predicted protein [Naegleria gruberi]
Length = 232
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 116/226 (51%), Gaps = 1/226 (0%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+ +LT L++ + A + + L +L LN+ LS +G E K+ L VLN+ FN
Sbjct: 1 MNRLTKLSIGFNRLHDAGAEIIGQLTTLTELNVAENFLSHEGAESICKLTQLTVLNINFN 60
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
I D ++ L+ L +L++ S I +EG +++ L L L+L+D ++ G ++L
Sbjct: 61 GIGDLGAAYIGELSKLTNLSIASNFITEEGARSISKLKQLTILDLNDNRIACKGAQYLGE 120
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
L+ L+ +NL I D + ++ L +L LNL I + G+ ++ L LT L++
Sbjct: 121 LSQLKKLNLLANYIQDKGAKSVSQLENLTELNLTRNSIQNEGIKSIIELPLLTKLNISQN 180
Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
RI++ A + K L+ L + + G K + ++ L +L+LS
Sbjct: 181 RISNEEAQLISGMKQLKELVATHTQIDNEGAKKLHEM-ELDILDLS 225
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 110/216 (50%), Gaps = 1/216 (0%)
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
L L++GFN + D + LT L LN+ + EG ++ L L L ++ +G
Sbjct: 4 LTKLSIGFNRLHDAGAEIIGQLTTLTELNVAENFLSHEGAESICKLTQLTVLNINFNGIG 63
Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
G ++ L+ L +++++ I++ R ++ L L L+L+ +I G L L+
Sbjct: 64 DLGAAYIGELSKLTNLSIASNFITEEGARSISKLKQLTILDLNDNRIACKGAQYLGELSQ 123
Query: 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
L L+L I D GA + +NL L + + + G+K I +L LT LN+SQN +
Sbjct: 124 LKKLNLLANYIQDKGAKSVSQLENLTELNLTRNSIQNEGIKSIIELPLLTKLNISQN-RI 182
Query: 434 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 469
+++ +LISG+ L L ++++I + G + L ++
Sbjct: 183 SNEEAQLISGMKQLKELVATHTQIDNEGAKKLHEME 218
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 1/205 (0%)
Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
D G + L L L +++ + G + LT L +N++F GI D + LS
Sbjct: 16 DAGAEIIGQLTTLTELNVAENFLSHEGAESICKLTQLTVLNINFNGIGDLGAAYIGELSK 75
Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409
L +L++ + IT+ G +++ L LT LDL RI GA YL L+ L + +
Sbjct: 76 LTNLSIASNFITEEGARSISKLKQLTILDLNDNRIACKGAQYLGELSQLKKLNLLANYIQ 135
Query: 410 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 469
D G K + L +LT LNL++N ++ ++ ++ I L L LN+S +RI++ + + +K
Sbjct: 136 DKGAKSVSQLENLTELNLTRN-SIQNEGIKSIIELPLLTKLNISQNRISNEEAQLISGMK 194
Query: 470 NLRSLTLESCKVTANDIKRLQSRDL 494
L+ L ++ K+L +L
Sbjct: 195 QLKELVATHTQIDNEGAKKLHEMEL 219
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 2/203 (0%)
Query: 143 RIHGGLVNLKG-LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
R+H + G L L LN+ N ++ + + LT L L I+ + + D G AY+
Sbjct: 13 RLHDAGAEIIGQLTTLTELNVAE-NFLSHEGAESICKLTQLTVLNINFNGIGDLGAAYIG 71
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
L KLT L++ +T S+S L L L+LN +++ G + ++ LK LNL
Sbjct: 72 ELSKLTNLSIASNFITEEGARSISKLKQLTILDLNDNRIACKGAQYLGELSQLKKLNLLA 131
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
N I D+ + L NL LNL I +EG+ ++ L L L +S ++ + + +S
Sbjct: 132 NYIQDKGAKSVSQLENLTELNLTRNSIQNEGIKSIIELPLLTKLNISQNRISNEEAQLIS 191
Query: 322 GLTNLESINLSFTGISDGSLRKL 344
G+ L+ + + T I + +KL
Sbjct: 192 GMKQLKELVATHTQIDNEGAKKL 214
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 96/218 (44%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L L I +++ D+G + L LT LN+ ++ +S+ L L LN+N
Sbjct: 1 MNRLTKLSIGFNRLHDAGAEIIGQLTTLTELNVAENFLSHEGAESICKLTQLTVLNINFN 60
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ D G ++ L L++ N IT+E + L L L+L+ I +G L
Sbjct: 61 GIGDLGAAYIGELSKLTNLSIASNFITEEGARSISKLKQLTILDLNDNRIACKGAQYLGE 120
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L LK L L + G + +S L NL +NL+ I + ++ + L L LN+
Sbjct: 121 LSQLKKLNLLANYIQDKGAKSVSQLENLTELNLTRNSIQNEGIKSIIELPLLTKLNISQN 180
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
+I++ ++ + L L +I + GA L +
Sbjct: 181 RISNEEAQLISGMKQLKELVATHTQIDNEGAKKLHEME 218
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 111/229 (48%), Gaps = 6/229 (2%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L L +G + ++D ++I Q ++L ++++ + ++ G + + L L+ NF
Sbjct: 4 LTKLSIG-FNRLHDAGAEIIG-QLTTLTELNVAENFLSHEGAESICKLTQLTVLNINFN- 60
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
I D G ++ LS LT+LS +N IT +G ++ + L L LDL G L
Sbjct: 61 GIGDLGAAYIGELSKLTNLSIA-SNFITEEGARSISKLKQLTILDLNDNRIACKGAQYLG 119
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L +L+ LN+ N I D K +S L NL L ++ + + + GI + L LT LN+
Sbjct: 120 ELSQLKKLNL-LANYIQDKGAKSVSQLENLTELNLTRNSIQNEGIKSIIELPLLTKLNIS 178
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
++ +S + L L Q+ ++G +K ++ L +L+L +
Sbjct: 179 QNRISNEEAQLISGMKQLKELVATHTQIDNEGAKKLHEM-ELDILDLSY 226
>gi|71748370|ref|XP_823240.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70832908|gb|EAN78412.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 846
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 115/444 (25%), Positives = 212/444 (47%), Gaps = 31/444 (6%)
Query: 49 MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL 108
++ I+S GS L+ +DL + V D+G C LQ L + C ++SD + L L+ L
Sbjct: 338 VEFISSLGS-LVELDLRDNWVGDAGCASFVHCRQLQQLKLSCCRRVSD--VRWLAALTCL 394
Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
+L N + ++ +++ LV+L++ C + + L L L+ L++ + I
Sbjct: 395 RTLDLSHTN-VRSRWLESLRACRYLVELNVAYCRDV-VEVSFLSELRLLKHLDLSGTD-I 451
Query: 169 TDSDMKPL---SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+ ++ P+ GLT L L CS V D + +L+ L++L L+ E + A + +
Sbjct: 452 GEQNLDPIGRCEGLTFL--LLKDCSSVKD--LHFLETLRELVKLDTERTGIMDANVCQVV 507
Query: 226 ALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
A L +L+ C L+D C + +LK L+L +T+E + L +LE +++
Sbjct: 508 ACKKLEFLSFRYCHLLTDVKC--LEGLRNLKTLDLAGTNVTNEGISSLPKCVSLEYVDVS 565
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI--SDGSLR 342
C + L L L NL+ ++ Q+ + + L+G +L + L+ + + G +R
Sbjct: 566 ECCLITH-LEFLRPLPNLQ--QVVADQMNLTDIGGLTGAPSLRRVTLNESKRLGTVGEVR 622
Query: 343 KLAGLSSLKSLNLDARQITDTGLAA-LTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRS 400
L L+ L+L I++ G+ + L S L HLD+ +T+ A L NLR
Sbjct: 623 ----LPYLQELSLRKSTISNAGIRSLLASCRSLQHLDMQHCHSVTELSA--LSQLPNLRE 676
Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
L + +T + HI +L L +++ ++TD + +S L L +++S + +T+
Sbjct: 677 LLLRNIRVTGEFMTHIASCVNLRKLQMTECADITD--VNCLSALQSLEDIDLSRTSVTTE 734
Query: 461 GLRHLKPLKNLRSLTLESCKVTAN 484
G++ L LR L L C+ N
Sbjct: 735 GIKGLSKCYALRKLNLSECRYVTN 758
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 131/522 (25%), Positives = 226/522 (43%), Gaps = 114/522 (21%)
Query: 27 AFRDC-ALQDLCLGQYPGVND-KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
+F C LQ L L V+D +W+ + + L ++DLS ++V L L+ C L
Sbjct: 364 SFVHCRQLQQLKLSCCRRVSDVRWLAAL----TCLRTLDLSHTNVRSRWLESLRACRYLV 419
Query: 85 SLDFNFC---IQIS----------------DGGLEHLRGLSNLTSLSFRR-NNAITAQGM 124
L+ +C +++S D G ++L + L+F + + + +
Sbjct: 420 ELNVAYCRDVVEVSFLSELRLLKHLDLSGTDIGEQNLDPIGRCEGLTFLLLKDCSSVKDL 479
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
L LVKLD ER + + + KLE L+ ++C+ +TD +K L GL NLK+
Sbjct: 480 HFLETLRELVKLDTERTGIMDANVCQVVACKKLEFLSFRYCHLLTD--VKCLEGLRNLKT 537
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L ++ + VT+ GI+ SL SL Y++++ C L
Sbjct: 538 LDLAGTNVTNEGIS------------------------SLPKCVSLEYVDVSECCL---- 569
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
+ +L F L+ L NL+ + D + D G LTG +L+
Sbjct: 570 -----------ITHLEF----------LRPLPNLQQVVADQMNLTDIG--GLTGAPSLRR 606
Query: 305 LELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL-NLDARQI-T 361
+ L++++ +G+ G L L+ ++L + IS+ +R L L+S +SL +LD + +
Sbjct: 607 VTLNESKRLGTVGEVRLP---YLQELSLRKSTISNAGIRSL--LASCRSLQHLDMQHCHS 661
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI--CGG------------- 406
T L+AL+ L L L L R+T ++ + NLR L++ C
Sbjct: 662 VTELSALSQLPNLRELLLRNIRVTGEFMTHIASCVNLRKLQMTECADITDVNCLSALQSL 721
Query: 407 --------GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
+T G+K + +L LNLS+ +T+ + + L L L++ + +T
Sbjct: 722 EDIDLSRTSVTTEGIKGLSKCYALRKLNLSECRYVTN--VNCLGKLPFLRELHLEKTNVT 779
Query: 459 SAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 500
G+ L L +L L C N ++RL S LP+L F
Sbjct: 780 DKGIAGLSNCIQLETLALTKCSRITN-VERLHS-SLPHLEEF 819
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 111/441 (25%), Positives = 185/441 (41%), Gaps = 66/441 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+ L + +++ + + +C+NL+ + + C + LE L LT LS N
Sbjct: 206 LRSLTLFATPLSNQIMSYFCECTNLERVVVDSCCGLV--SLECFAALQRLTHLSVL-NCT 262
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT +G+ + +L + L+ C MKL SLN L
Sbjct: 263 ITDEGLPPISKCFSLQYVMLDNC-------------MKLRSLNC-------------LGS 296
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L NL++L +S +++ + G+ L+ L+ L +L A ++ +S+LGSL L+L
Sbjct: 297 LRNLRTLIVSRNRIPEEGVQGLRKLRDLEVLRFSVFNRPTA-VEFISSLGSLVELDLRDN 355
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ D GC F VH + L L+ SC + L
Sbjct: 356 WVGDAGCASF---------------------VHCRQLQQLKL----SCCRRVSDVRWLAA 390
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA 357
L L+ L+LS T V S L L L +N+++ + + S L+ L LK L+L
Sbjct: 391 LTCLRTLDLSHTNVRSRWLESLRACRYLVELNVAYCRDVVEVSF--LSELRLLKHLDLSG 448
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
I + L + GLT L L + +L + L L+ G+ DA V +
Sbjct: 449 TDIGEQNLDPIGRCEGLTFL-LLKDCSSVKDLHFLETLRELVKLDTERTGIMDANVCQVV 507
Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL- 476
L L+ LTD ++ + GL L +L+++ + +T+ G+ L +L + +
Sbjct: 508 ACKKLEFLSFRYCHLLTD--VKCLEGLRNLKTLDLAGTNVTNEGISSLPKCVSLEYVDVS 565
Query: 477 ESCKVTANDIKRLQSRDLPNL 497
E C +T + R LPNL
Sbjct: 566 ECCLITHLEFL----RPLPNL 582
>gi|298360550|gb|ADI77854.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|167862030|gb|ACA05714.1| InlA [Listeria monocytogenes]
Length = 576
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NHIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D + L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
L L + I D + L NLT NL LELS + S + LSGLT+L+ LSF G
Sbjct: 146 GLTLFNNHITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQV 197
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 459 SAGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 78/177 (44%), Gaps = 50/177 (28%)
Query: 316 GLRHLSG---LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSL 371
G++ + G L NL IN S ++D + L L+ L + ++ QI D T LA LT+L
Sbjct: 87 GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNL 144
Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
TGLT LF ITD L+N NL LE+ ++D
Sbjct: 145 TGLT---LFNNHITDIDP--LKNLTNLNRLELSSNTISD--------------------- 178
Query: 432 NLTDKTLELISGLTGLVSLNVSNSRITSAG--LRHLKPLKNLRSLTLESCKVTANDI 486
IS L+GL SL + S G + LKPL NL TLE +++N +
Sbjct: 179 ---------ISALSGLTSL-----QQLSFGNQVTDLKPLANLT--TLERLDISSNKV 219
>gi|168704644|ref|ZP_02736921.1| hypothetical protein GobsU_34225 [Gemmata obscuriglobus UQM 2246]
Length = 952
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 118/345 (34%), Positives = 170/345 (49%), Gaps = 32/345 (9%)
Query: 46 DKWMDVIASQ---GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
DK ++++ +Q G SL + LS +D+ D L L + L+ LD + C +SD L
Sbjct: 619 DKRLEMLWTQIRRGLSLRRLVLSKTDIAD--LSPLAPLTALEELDLSGCAGVSD-----L 671
Query: 103 RGLSNLTSLSFRR-NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L+NLT+L F + + A L L LDL C + L L L LE LN
Sbjct: 672 SPLANLTALRFLDLSGCAGGADLSPLANLTALRFLDLSGCAGV-SDLAPLANLTALEGLN 730
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAA 219
++ C + SD+ PL+ LT L+ L +S C+ D S +A L GL+ LNL GC +
Sbjct: 731 LRGCAGV--SDLSPLANLTGLRHLNLSGCAGWADLSPLANLTGLRH---LNLNGC-TGVS 784
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNL 278
L L+ L +L L+L+ C D + + +L+ L+L G ++D L L T L
Sbjct: 785 DLSPLAPLTALEELDLSGCAGVSD-LSPLANLTALEGLDLSGCAGVSD--LSPLAPHTAL 841
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGIS 337
L+L C G L L L+ L+LS G S L L+ LT LE ++LS G+S
Sbjct: 842 RFLDLSGCA-GVSCLSPLAPHTALRFLDLSGC-AGVSDLSPLANLTALEDLDLSGCAGVS 899
Query: 338 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG 381
D L LA L++L+ L+L + D L+ L LT L LDL G
Sbjct: 900 D--LSPLANLTALEGLDLSGCTGVLD--LSPLAPLTALQFLDLGG 940
>gi|313485070|gb|ADR53006.1| InlA [Listeria monocytogenes]
Length = 800
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|390362171|ref|XP_003730087.1| PREDICTED: F-box/LRR-repeat protein 14-like [Strongylocentrotus
purpuratus]
Length = 478
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 152/298 (51%), Gaps = 24/298 (8%)
Query: 82 NLQSLDFNFCIQISDGGLEHL--RGLSNLTSLSFRRNNAITAQGM-KAFAGLINLVKLDL 138
N+QSL+ + C ++D GL H + + LT L+ IT + + L L LDL
Sbjct: 175 NIQSLNLSGCYNLTDVGLSHAFSKEIPTLTVLNLSLCKQITDTSLWRIEQYLKQLEVLDL 234
Query: 139 ERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT-----NLKSLQI---- 187
C+ I G LV +GL KL+ LN++ C I+D + L+G++ + L++
Sbjct: 235 AGCSNITNTGLLVIARGLHKLKGLNLRSCRHISDVGIGYLAGVSVEAARGTRDLELLVLQ 294
Query: 188 SCSKVTDSGIAYL-KGLQKLTLLNLEG-CPVTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
C K++D+ + + KGL KL LNL C +T + SLS + SL LNL C +SD G
Sbjct: 295 DCQKLSDTALMSIAKGLHKLRSLNLSFCCGITDTGMISLSRMQSLRELNLRSCDNISDIG 354
Query: 245 CEKFSKI-GSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT-GLC 300
++ G L+ F ++I D L H+ +G+ NL++++L SC I DEG+ L L
Sbjct: 355 LAHLAEYGGHFATLDASFCDKIGDAALSHISQGMPNLKNVSLSSCHITDEGVGRLVRSLH 414
Query: 301 NLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL 355
N+ L + +V GL ++ L L+ I+L T I+ L ++ L L LNL
Sbjct: 415 NMTTLNIGQCVRVTDKGLALIAEHLKELKCIDLYGCTMITTVGLERIMQLPCLTVLNL 472
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 104/330 (31%), Positives = 161/330 (48%), Gaps = 56/330 (16%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ G+ N++SL +S C +TD G+ A+ K + LT+LNL C
Sbjct: 170 MQGMPNIQSLNLSGCYNLTDVGLSHAFSKEIPTLTVLNLSLCK----------------- 212
Query: 233 LNLNRCQLSDDGCEKFSK-IGSLKVLNL-GFNEITDE-CLVHLKGLTNLESLNLDSC-GI 288
Q++D + + + L+VL+L G + IT+ LV +GL L+ LNL SC I
Sbjct: 213 ------QITDTSLWRIEQYLKQLEVLDLAGCSNITNTGLLVIARGLHKLKGLNLRSCRHI 266
Query: 289 GDEGLVNLTG--------------LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
D G+ L G L C +LSDT + S GL L S+NLSF
Sbjct: 267 SDVGIGYLAGVSVEAARGTRDLELLVLQDCQKLSDTALMSIA----KGLHKLRSLNLSFC 322
Query: 335 -GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTG-LTHLDL-FGARITDSGAA 390
GI+D + L+ + SL+ LNL + I+D GLA L G LD F +I D+ +
Sbjct: 323 CGITDTGMISLSRMQSLRELNLRSCDNISDIGLAHLAEYGGHFATLDASFCDKIGDAALS 382
Query: 391 YL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGL 447
++ + NL+++ + +TD GV + ++ L ++T LN+ Q +TDK L LI+ L L
Sbjct: 383 HISQGMPNLKNVSLSSCHITDEGVGRLVRSLHNMTTLNIGQCVRVTDKGLALIAEHLKEL 442
Query: 448 VSLNVSN-SRITSAGLRHLKPLKNLRSLTL 476
+++ + IT+ GL + L L L L
Sbjct: 443 KCIDLYGCTMITTVGLERIMQLPCLTVLNL 472
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 91/303 (30%), Positives = 159/303 (52%), Gaps = 26/303 (8%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPL--SGLTNLKSLQIS-CSKVTDSGIAYLKG-LQKL 206
++G+ ++SLN+ C +TD + + L L +S C ++TD+ + ++ L++L
Sbjct: 170 MQGMPNIQSLNLSGCYNLTDVGLSHAFSKEIPTLTVLNLSLCKQITDTSLWRIEQYLKQL 229
Query: 207 TLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIG--------SLK 255
+L+L GC L L L LNL C+ +SD G + + L+
Sbjct: 230 EVLDLAGCSNITNTGLLVIARGLHKLKGLNLRSCRHISDVGIGYLAGVSVEAARGTRDLE 289
Query: 256 VLNLG-FNEITDECLVHL-KGLTNLESLNLD-SCGIGDEGLVNLTGLCNLKCLEL-SDTQ 311
+L L +++D L+ + KGL L SLNL CGI D G+++L+ + +L+ L L S
Sbjct: 290 LLVLQDCQKLSDTALMSIAKGLHKLRSLNLSFCCGITDTGMISLSRMQSLRELNLRSCDN 349
Query: 312 VGSSGLRHLSGL-TNLESINLSFT-GISDGSLRKLA-GLSSLKSLNLDARQITDTGLAAL 368
+ GL HL+ + +++ SF I D +L ++ G+ +LK+++L + ITD G+ L
Sbjct: 350 ISDIGLAHLAEYGGHFATLDASFCDKIGDAALSHISQGMPNLKNVSLSSCHITDEGVGRL 409
Query: 369 T-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICGGGL-TDAGVKHIKDLSSLTL 424
SL +T L++ R+TD G A + + K L+ +++ G + T G++ I L LT+
Sbjct: 410 VRSLHNMTTLNIGQCVRVTDKGLALIAEHLKELKCIDLYGCTMITTVGLERIMQLPCLTV 469
Query: 425 LNL 427
LNL
Sbjct: 470 LNL 472
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 139/281 (49%), Gaps = 51/281 (18%)
Query: 62 VDLSG-SDVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
+DL+G S++T++GL+ + + L+ L+ C ISD G+ +L G+S
Sbjct: 232 LDLAGCSNITNTGLLVIARGLHKLKGLNLRSCRHISDVGIGYLAGVS------------- 278
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLESLNIKWCNCITDSDMKPLS 177
++A G +L L L+ C ++ L+++ KGL KL SLN+ +C ITD+ M LS
Sbjct: 279 ----VEAARGTRDLELLVLQDCQKLSDTALMSIAKGLHKLRSLNLSFCCGITDTGMISLS 334
Query: 178 GLTNLKSLQI-SCSKVTDSGIAYLKGL-QKLTLLNLEGC-PVTAACLDSLS-ALGSLFYL 233
+ +L+ L + SC ++D G+A+L L+ C + A L +S + +L +
Sbjct: 335 RMQSLRELNLRSCDNISDIGLAHLAEYGGHFATLDASFCDKIGDAALSHISQGMPNLKNV 394
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEG 292
+L+ C ++D+G +G L ++ L N+ +LN+ C + D+G
Sbjct: 395 SLSSCHITDEG------VGRL-----------------VRSLHNMTTLNIGQCVRVTDKG 431
Query: 293 LVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 331
L + L LKC++L T + + GL + L L +NL
Sbjct: 432 LALIAEHLKELKCIDLYGCTMITTVGLERIMQLPCLTVLNL 472
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 128/257 (49%), Gaps = 35/257 (13%)
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVN--------LTGLCNLKCLELSDTQVGSSGLRHLSG 322
++G+ N++SLNL C + D GL + LT L C +++DT + R
Sbjct: 170 MQGMPNIQSLNLSGCYNLTDVGLSHAFSKEIPTLTVLNLSLCKQITDTSL----WRIEQY 225
Query: 323 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT-----GL 374
L LE ++L+ + I++ L +A GL LK LNL + R I+D G+ L ++ G
Sbjct: 226 LKQLEVLDLAGCSNITNTGLLVIARGLHKLKGLNLRSCRHISDVGIGYLAGVSVEAARGT 285
Query: 375 THLDLF----GARITDSG-AAYLRNFKNLRSLEI---CGGGLTDAGVKHIKDLSSLTLLN 426
L+L +++D+ + + LRSL + CG +TD G+ + + SL LN
Sbjct: 286 RDLELLVLQDCQKLSDTALMSIAKGLHKLRSLNLSFCCG--ITDTGMISLSRMQSLRELN 343
Query: 427 LSQNCNLTDKTLELISGLTG-LVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 483
L N++D L ++ G +L+ S +I A L H+ + + NL++++L SC +T
Sbjct: 344 LRSCDNISDIGLAHLAEYGGHFATLDASFCDKIGDAALSHISQGMPNLKNVSLSSCHITD 403
Query: 484 NDIKRLQSRDLPNLVSF 500
+ RL R L N+ +
Sbjct: 404 EGVGRL-VRSLHNMTTL 419
>gi|290993931|ref|XP_002679586.1| hypothetical protein NAEGRDRAFT_47566 [Naegleria gruberi]
gi|284093203|gb|EFC46842.1| hypothetical protein NAEGRDRAFT_47566 [Naegleria gruberi]
Length = 675
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 98/312 (31%), Positives = 154/312 (49%), Gaps = 42/312 (13%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLT-NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLN 210
GL L +LN++ C+ ITD+ +K L+ ++ NL L + C+KV DS ++Y+ +L L+
Sbjct: 337 GLQTLHTLNVQGCHYITDNGVKYLTYISQNLTHLNLRGCTKVNDSAMSYISQFSQLNYLD 396
Query: 211 LEGCP-VTAACLDSLSALG---SLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 265
+ GC VT + LS L YL+L C Q++D+G S++ L+ L L
Sbjct: 397 MTGCVNVTDLGVKHLSQSACKTKLKYLDLTFCHQVTDEGVRYLSEMTELEDLTL------ 450
Query: 266 DECLVHL--KGLT-------NLESLNLDSC------GIGDEGLVNLTGLCNLKCLELSDT 310
+C H+ KGLT N+ LNL C G+ L L L + C SD
Sbjct: 451 -QCCRHITAKGLTQLVNSCQNIRVLNLTGCHLLEISGVRSGSLPKLEKLSMMGCKLTSD- 508
Query: 311 QVGSSGLRHLSGLT-NLESINLSFTG-ISDGSL-RKLAGLSSLKSLNLDA-RQITDTGLA 366
+ LR +S T NL+ + LSF+ I+DG + R + +L LNL ITD L
Sbjct: 509 ----NCLRVISDWTCNLKELVLSFSDMITDGGIERVIINSKNLSHLNLKKCSNITDKSLE 564
Query: 367 ALTSLTG--LTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSL 422
++ + +L+L G R T+ G YL N +L+ I + + G+ H+ SL
Sbjct: 565 CISKHLSNVVEYLNLTGVRGFTNGGLKYLENCTSLKEFVIQRCIHVNNEGLAHLAYCPSL 624
Query: 423 TLLNLSQNCNLT 434
+L++S+N +T
Sbjct: 625 EILDISENTLIT 636
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 137/278 (49%), Gaps = 36/278 (12%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDC---SNLQSLDFNFCIQISDGGL 99
VND M I SQ S L +D++G +VTD G+ HL + L+ LD FC Q++D G+
Sbjct: 378 VNDSAMSYI-SQFSQLNYLDMTGCVNVTDLGVKHLSQSACKTKLKYLDLTFCHQVTDEGV 436
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+L ++ L L+ + ITA+G+ N+ L+L C + V L KLE
Sbjct: 437 RYLSEMTELEDLTLQCCRHITAKGLTQLVNSCQNIRVLNLTGCHLLEISGVRSGSLPKLE 496
Query: 159 SLNIKWCNCITDSDMKPLSGLT-NLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCPV 216
L++ C +D+ ++ +S T NLK L +S S +TD GI + ++N +
Sbjct: 497 KLSMMGCKLTSDNCLRVISDWTCNLKELVLSFSDMITDGGI-------ERVIINSKN--- 546
Query: 217 TAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGS--LKVLNL-GFNEITDECLVHL 272
L +LNL +C ++D E SK S ++ LNL G T+ L +L
Sbjct: 547 -------------LSHLNLKKCSNITDKSLECISKHLSNVVEYLNLTGVRGFTNGGLKYL 593
Query: 273 KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD 309
+ T+L+ + C + +EGL +L +L+ L++S+
Sbjct: 594 ENCTSLKEFVIQRCIHVNNEGLAHLAYCPSLEILDISE 631
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 95/196 (48%), Gaps = 34/196 (17%)
Query: 330 NLSFTGISDGSLRKL-AGLSSLKSLNLDA-RQITDTGLAALTSLT-GLTHLDLFG-ARIT 385
N FT + + R+ GL +L +LN+ ITD G+ LT ++ LTHL+L G ++
Sbjct: 320 NFGFTSKRNPNSREPNYGLQTLHTLNVQGCHYITDNGVKYLTYISQNLTHLNLRGCTKVN 379
Query: 386 DSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKD---LSSLTLLNLSQNCNLTDKTLELI 441
DS +Y+ F L L++ G +TD GVKH+ + L L+L+ +TD+ + +
Sbjct: 380 DSAMSYISQFSQLNYLDMTGCVNVTDLGVKHLSQSACKTKLKYLDLTFCHQVTDEGVRYL 439
Query: 442 SGLTGLVSLNVSNSR-ITSAGLR-----------------HLKPLKNLRS--------LT 475
S +T L L + R IT+ GL HL + +RS L+
Sbjct: 440 SEMTELEDLTLQCCRHITAKGLTQLVNSCQNIRVLNLTGCHLLEISGVRSGSLPKLEKLS 499
Query: 476 LESCKVTANDIKRLQS 491
+ CK+T+++ R+ S
Sbjct: 500 MMGCKLTSDNCLRVIS 515
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 117/244 (47%), Gaps = 21/244 (8%)
Query: 274 GLTNLESLNLDSCG-IGDEGLVNLTGLC-NLKCLELSD-TQVGSSGLRHLSGLTNLESIN 330
GL L +LN+ C I D G+ LT + NL L L T+V S + ++S + L ++
Sbjct: 337 GLQTLHTLNVQGCHYITDNGVKYLTYISQNLTHLNLRGCTKVNDSAMSYISQFSQLNYLD 396
Query: 331 LS----FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-I 384
++ T + L + A + LK L+L Q+TD G+ L+ +T L L L R I
Sbjct: 397 MTGCVNVTDLGVKHLSQSACKTKLKYLDLTFCHQVTDEGVRYLSEMTELEDLTLQCCRHI 456
Query: 385 TDSGAAYLRNF-KNLRSLEICGGGLTD-AGVKH--IKDLSSLTLLNLSQNCNLT-DKTLE 439
T G L N +N+R L + G L + +GV+ + L L+++ C LT D L
Sbjct: 457 TAKGLTQLVNSCQNIRVLNLTGCHLLEISGVRSGSLPKLEKLSMMG----CKLTSDNCLR 512
Query: 440 LISGLT-GLVSLNVSNS-RITSAGL-RHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 496
+IS T L L +S S IT G+ R + KNL L L+ C + S+ L N
Sbjct: 513 VISDWTCNLKELVLSFSDMITDGGIERVIINSKNLSHLNLKKCSNITDKSLECISKHLSN 572
Query: 497 LVSF 500
+V +
Sbjct: 573 VVEY 576
>gi|384252696|gb|EIE26172.1| RNI-like protein [Coccomyxa subellipsoidea C-169]
Length = 663
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 121/225 (53%), Gaps = 23/225 (10%)
Query: 272 LKGLTNLESLNL--DSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLES 328
LK LT L SL + DS + L+ L +L+ L L++ + GL +LS LT+L
Sbjct: 245 LKSLTKLSSLRMRNDSATAKLPPMHCLSELRSLQELSLTEHLHLLLPGLTNLSALTDLRQ 304
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDS 387
+ L G+++G LR L+ L+SL++ DA ++TDTGL L+SLTGLTHLD
Sbjct: 305 LRLVKVGVTNGVLRCAGALTKLQSLHIPDAFRVTDTGLHHLSSLTGLTHLDF-------C 357
Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
++ R+ +T+AGV + L++L LNL+ + +T + L ++ T L
Sbjct: 358 SPSHRRD-----------EDITNAGVAALSALTNLRSLNLAGHSEVTAEGLAFLADATAL 406
Query: 448 VSLNVSNSRI-TSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 491
L++S + + G+ L L NLRSL L+ +++ +++L S
Sbjct: 407 TCLDLSGLPLGPTGGVDFLASLTNLRSLCLQRTQLSNEHVQQLGS 451
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 102/331 (30%), Positives = 152/331 (45%), Gaps = 24/331 (7%)
Query: 102 LRGLSNLTSLSFRRNNAITAQG---MKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMK 156
L GLS L L F NA+ G + + L L +L++ + G LK L K
Sbjct: 194 LGGLSRLQHLQF---NAVAFDGRTLISKLSSLQGLRQLEMANVVGAYPAEGDAFLKSLTK 250
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTD---SGIAYLKGLQKLTLLNLE 212
L SL ++ N + + P+ L+ L+SLQ +S ++ G+ L L L L L
Sbjct: 251 LSSLRMR--NDSATAKLPPMHCLSELRSLQELSLTEHLHLLLPGLTNLSALTDLRQLRLV 308
Query: 213 GCPVTAACLDSLSALGSLFYLNL-NRCQLSDDGCEKFSKIGSLKVLNLGF------NEIT 265
VT L AL L L++ + +++D G S + L L+ +IT
Sbjct: 309 KVGVTNGVLRCAGALTKLQSLHIPDAFRVTDTGLHHLSSLTGLTHLDFCSPSHRRDEDIT 368
Query: 266 DECLVHLKGLTNLESLNLD-SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-LRHLSGL 323
+ + L LTNL SLNL + EGL L L CL+LS +G +G + L+ L
Sbjct: 369 NAGVAALSALTNLRSLNLAGHSEVTAEGLAFLADATALTCLDLSGLPLGPTGGVDFLASL 428
Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
TNL S+ L T +S+ +++L L++L SL L I D AAL LT L LD+
Sbjct: 429 TNLRSLCLQRTQLSNEHVQQLGSLTALTSLGLAWCAIDDEAAAALAPLTKLADLDVRYCP 488
Query: 384 ITDSGAAYL-RNFKNLRSLEICGGGLTDAGV 413
+T++G L R +L + G T G+
Sbjct: 489 MTNAGLCQLSRAMPDLAIFAVEGCPATSIGI 519
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 82/184 (44%), Gaps = 38/184 (20%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQ-------ISDGGLEHLRGLSNLTSLSFRRNNAITA 121
VTD+GL HL + L LDF C I++ G+ L L+NL SL+ ++ +TA
Sbjct: 337 VTDTGLHHLSSLTGLTHLDF--CSPSHRRDEDITNAGVAALSALTNLRSLNLAGHSEVTA 394
Query: 122 QGMKAF--------------------------AGLINLVKLDLERCTRIHGGLVNLKGLM 155
+G+ AF A L NL L L+R + + L L
Sbjct: 395 EGL-AFLADATALTCLDLSGLPLGPTGGVDFLASLTNLRSLCLQRTQLSNEHVQQLGSLT 453
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGC 214
L SL + WC I D L+ LT L L + +T++G+ L + + L + +EGC
Sbjct: 454 ALTSLGLAWC-AIDDEAAAALAPLTKLADLDVRYCPMTNAGLCQLSRAMPDLAIFAVEGC 512
Query: 215 PVTA 218
P T+
Sbjct: 513 PATS 516
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 6/176 (3%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF-----RRNNAITAQGMKAFAGLINLVK 135
+ LQSL +++D GL HL L+ LT L F RR+ IT G+ A + L NL
Sbjct: 324 TKLQSLHIPDAFRVTDTGLHHLSSLTGLTHLDFCSPSHRRDEDITNAGVAALSALTNLRS 383
Query: 136 LDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L+L + + GL L L L++ + L+ LTNL+SL + +++++
Sbjct: 384 LNLAGHSEVTAEGLAFLADATALTCLDLSGLPLGPTGGVDFLASLTNLRSLCLQRTQLSN 443
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
+ L L LT L L C + +L+ L L L++ C +++ G + S+
Sbjct: 444 EHVQQLGSLTALTSLGLAWCAIDDEAAAALAPLTKLADLDVRYCPMTNAGLCQLSR 499
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 102/220 (46%), Gaps = 23/220 (10%)
Query: 288 IGDEGLVNLTGLCNLKCLELS----DTQVGSSGLRHLSGLTNLESINL--SFTGISDGSL 341
I + V L GL L+ L+ + D + S L L GL LE N+ ++ D L
Sbjct: 186 ITERDAVLLGGLSRLQHLQFNAVAFDGRTLISKLSSLQGLRQLEMANVVGAYPAEGDAFL 245
Query: 342 RKLAGLSSLKSLN--LDARQITDTGLAALTSLTGLT---HLDLFGARITDSGAAYLRNFK 396
+ L LSSL+ N A+ L+ L SL L+ HL L +T+ L
Sbjct: 246 KSLTKLSSLRMRNDSATAKLPPMHCLSELRSLQELSLTEHLHLLLPGLTN-----LSALT 300
Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV---S 453
+LR L + G+T+ ++ L+ L L++ +TD L +S LTGL L+ S
Sbjct: 301 DLRQLRLVKVGVTNGVLRCAGALTKLQSLHIPDAFRVTDTGLHHLSSLTGLTHLDFCSPS 360
Query: 454 NSR---ITSAGLRHLKPLKNLRSLTLE-SCKVTANDIKRL 489
+ R IT+AG+ L L NLRSL L +VTA + L
Sbjct: 361 HRRDEDITNAGVAALSALTNLRSLNLAGHSEVTAEGLAFL 400
>gi|255025517|ref|ZP_05297503.1| internalin A [Listeria monocytogenes FSL J2-003]
Length = 744
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|85679240|gb|ABC72036.1| InlA [Listeria monocytogenes]
Length = 794
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +K++D + L KLT NLE T + ++ LG +L L
Sbjct: 203 ANLTTLERLDISSNKLSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 255
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 256 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 309
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 310 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 367
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 368 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKT 425
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 426 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 458
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 91 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 143
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 144 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 198
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 199 --LKPLANLTTLERLDISSNKLSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 256
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 257 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 307
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 308 -NISPLAGLTALT 319
>gi|194326157|emb|CAQ77237.1| internalin A [Listeria monocytogenes]
gi|290350820|dbj|BAI78331.1| internalin A [Listeria monocytogenes]
gi|290350836|dbj|BAI78339.1| internalin A [Listeria monocytogenes]
gi|298360124|gb|ADI77641.1| internalin A [Listeria monocytogenes]
gi|298360394|gb|ADI77776.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|223698952|gb|ACN19208.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--FFGNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 341
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 342 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 124/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 5 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ + F G
Sbjct: 61 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL---FFGNQVT 113
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|22347568|gb|AAM95929.1| internalin A precursor [Listeria monocytogenes]
Length = 743
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +K++D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKLSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 254
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 255 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 312
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 313 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKV 370
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 371 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 403
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 36 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 88
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 89 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 143
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 144 --LKPLANLTTLERLDISSNKLSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 201
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 202 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 252
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 253 -NISPLAGLTALT 264
>gi|167861940|gb|ACA05669.1| InlA [Listeria monocytogenes]
gi|167861954|gb|ACA05676.1| InlA [Listeria monocytogenes]
gi|194239400|emb|CAQ76840.1| internalin A [Listeria monocytogenes]
gi|298360640|gb|ADI77899.1| truncated internalin A [Listeria monocytogenes]
gi|298360688|gb|ADI77923.1| truncated internalin A [Listeria monocytogenes]
gi|443428860|gb|AGC92229.1| truncated internalin A [Listeria monocytogenes]
gi|443428878|gb|AGC92238.1| truncated internalin A [Listeria monocytogenes]
Length = 684
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|167861888|gb|ACA05643.1| InlA [Listeria monocytogenes]
gi|194326163|emb|CAQ77240.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|357615345|gb|EHJ69606.1| hypothetical protein KGM_07261 [Danaus plexippus]
Length = 438
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 144/290 (49%), Gaps = 37/290 (12%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLK-DCSNLQSLDFN 89
AL+ L L V D + IA +L ++L G +VTD+GL+ + L+ L+
Sbjct: 166 ALKRLDLSLCKQVTDSSLGRIAQSLKNLEELELGGCCNVTDTGLLLIAWGLRKLRRLNLR 225
Query: 90 FCIQISDGGLEHL------RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143
C ++D G+ HL RG L L + +T + +K A
Sbjct: 226 SCWHVNDDGIAHLCGGGEARGTPELEHLGLQDCQRLTDEALKHAA--------------- 270
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKG 202
GL KL+S+N+ +C +TD+ ++ L+ L +L+ + + +C V+D+G+A+L
Sbjct: 271 --------TGLPKLKSINLSFCVAVTDAGLRHLARLPHLEDVNLRACDGVSDAGVAHLAE 322
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALG--SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
+L L++ C S + LG L L+L+ C+L+D+G E+ +++ L+ LN+G
Sbjct: 323 SGRLRALDVSFCDKVGDEALSHATLGLSGLRCLSLSACRLTDEGLERVARLSQLETLNIG 382
Query: 261 -FNEITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL 307
++TD L L +GL NL++++L C I EGL ++ L L L L
Sbjct: 383 QCTQVTDRGLRALGEGLKNLKAIDLYGCTCITHEGLDHIVKLPRLSVLNL 432
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 106/318 (33%), Positives = 162/318 (50%), Gaps = 26/318 (8%)
Query: 182 LKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSA--LGSLFYLNLNR 237
++ LQ+ S + +A L GL+ L+L GC VT A L S A L +L L+L+
Sbjct: 118 VRRLQVLSLRRGLRDAVAALPGLESLSL---SGCYSVTDAALASAFATELPALKRLDLSL 174
Query: 238 C-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSCG-IGDEG 292
C Q++D + ++ + +L+ L LG +TD L+ + GL L LNL SC + D+G
Sbjct: 175 CKQVTDSSLGRIAQSLKNLEELELGGCCNVTDTGLLLIAWGLRKLRRLNLRSCWHVNDDG 234
Query: 293 LVNL------TGLCNLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRK 343
+ +L G L+ L L D Q + L+H + GL L+SINLSF ++D LR
Sbjct: 235 IAHLCGGGEARGTPELEHLGLQDCQRLTDEALKHAATGLPKLKSINLSFCVAVTDAGLRH 294
Query: 344 LAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLR-NFKNLRS 400
LA L L+ +NL A ++D G+A L L LD+ F ++ D ++ LR
Sbjct: 295 LARLPHLEDVNLRACDGVSDAGVAHLAESGRLRALDVSFCDKVGDEALSHATLGLSGLRC 354
Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI-SGLTGLVSLNVSN-SRIT 458
L + LTD G++ + LS L LN+ Q +TD+ L + GL L ++++ + IT
Sbjct: 355 LSLSACRLTDEGLERVARLSQLETLNIGQCTQVTDRGLRALGEGLKNLKAIDLYGCTCIT 414
Query: 459 SAGLRHLKPLKNLRSLTL 476
GL H+ L L L L
Sbjct: 415 HEGLDHIVKLPRLSVLNL 432
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 141/304 (46%), Gaps = 39/304 (12%)
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC--EKFS-KIGSLKVL 257
+G+++L +L+L D+++AL L L+L+ C D F+ ++ +LK L
Sbjct: 116 RGVRRLQVLSLR-----RGLRDAVAALPGLESLSLSGCYSVTDAALASAFATELPALKRL 170
Query: 258 NLGF-NEITDECLVHL-KGLTNLESLNLDSC-GIGDEGL--VNLTGLCNLKCLELSDTQV 312
+L ++TD L + + L NLE L L C + D GL + + S V
Sbjct: 171 DLSLCKQVTDSSLGRIAQSLKNLEELELGGCCNVTDTGLLLIAWGLRKLRRLNLRSCWHV 230
Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLA-ALTS 370
G+ HL G G R G L+ L L D +++TD L A T
Sbjct: 231 NDDGIAHLCG---------------GGEAR---GTPELEHLGLQDCQRLTDEALKHAATG 272
Query: 371 LTGLTHLDL-FGARITDSGAAYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNL 427
L L ++L F +TD+G +L +L +L C G ++DAGV H+ + L L++
Sbjct: 273 LPKLKSINLSFCVAVTDAGLRHLARLPHLEDVNLRACDG-VSDAGVAHLAESGRLRALDV 331
Query: 428 SQNCNLTDKTLELIS-GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC-KVTAND 485
S + D+ L + GL+GL L++S R+T GL + L L +L + C +VT
Sbjct: 332 SFCDKVGDEALSHATLGLSGLRCLSLSACRLTDEGLERVARLSQLETLNIGQCTQVTDRG 391
Query: 486 IKRL 489
++ L
Sbjct: 392 LRAL 395
>gi|298359882|gb|ADI77520.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|357511813|ref|XP_003626195.1| F-box/LRR-repeat protein [Medicago truncatula]
gi|355501210|gb|AES82413.1| F-box/LRR-repeat protein [Medicago truncatula]
Length = 679
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 130/470 (27%), Positives = 217/470 (46%), Gaps = 76/470 (16%)
Query: 69 VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLS---NLTSLSFRRNNAITAQGM 124
VTD GL + CS L+ L +C++ISD G++ L N +S+ + +T + +
Sbjct: 197 VTDIGLAKIAVGCSKLEKLSLKWCLEISDLGIDLLSKKCFDLNFLDVSYLK---VTNESL 253
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNL-KGLMKLESLNIKWCNCITDSD-MKPLSGLTN 181
++ A L+ L + C + GL L KG L+++++ CNC++ S + +SG
Sbjct: 254 RSIASLLKLEVFIMVGCYLVDDAGLQFLEKGCPLLKAIDVSRCNCVSPSGLLSVISGHEG 313
Query: 182 LKSLQI-SC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRC 238
L+ + C S+++ LK L+ L+++ ++G V+ L + S SL L L++C
Sbjct: 314 LEQINAGHCLSELSAPLTNGLKNLKHLSVIRIDGVRVSDFILQIIGSNCKSLVELGLSKC 373
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT 297
+ V N+G ++ G NL +L+L C + D + +
Sbjct: 374 ---------------IGVTNMGIMQVV--------GCCNLTTLDLTCCRFVTDAAISTIA 410
Query: 298 GLC-NLKCLEL-SDTQVGSSGLRHL-SGLTNLESINLS-FTGISDGSLRKLAGLSSLKSL 353
C NL CL+L S V GL + S LE ++L+ +G++D +L+ L+ S L L
Sbjct: 411 NSCPNLACLKLESCDMVTEIGLYQIGSSCLMLEELDLTDCSGVNDIALKYLSRCSKLVRL 470
Query: 354 NLD-ARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKN---LRSLEICGGG 407
L I+D GLA + + LT LDL+ RI D G A L N + +L C
Sbjct: 471 KLGLCTNISDIGLAHIACNCPKLTELDLYRCVRIGDDGLAALTTGCNKLAMLNLAYC-NR 529
Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 467
+TDAG+K I +L L+ L N+T G+ ++ VS R+ + L+H +
Sbjct: 530 ITDAGLKCISNLGELSDFELRGLSNITS---------IGIKAVAVSCKRLANLDLKHCEK 580
Query: 468 L------------KNLRSLTLESCKVT-------ANDIKRLQSRDLPNLV 498
L +NL + + C V+ +++KRLQ L LV
Sbjct: 581 LDDTGFRALAFYSQNLLQINMSYCNVSDHVLWLLMSNLKRLQDAKLVYLV 630
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 116/431 (26%), Positives = 188/431 (43%), Gaps = 50/431 (11%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L+ L L ++D +D+++ + L +D+S VT+ L + L+ C
Sbjct: 212 LEKLSLKWCLEISDLGIDLLSKKCFDLNFLDVSYLKVTNESLRSIASLLKLEVFIMVGCY 271
Query: 93 QISDGGLEHL-RGLSNLTSLSFRRNNAITAQG-MKAFAGLINLVKLDLERC-TRIHGGLV 149
+ D GL+ L +G L ++ R N ++ G + +G L +++ C + + L
Sbjct: 272 LVDDAGLQFLEKGCPLLKAIDVSRCNCVSPSGLLSVISGHEGLEQINAGHCLSELSAPLT 331
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ----ISCSKVTDSGIAYLKGLQK 205
N GL L+ L++ + + SD +N KSL C VT+ GI + G
Sbjct: 332 N--GLKNLKHLSVIRIDGVRVSDFILQIIGSNCKSLVELGLSKCIGVTNMGIMQVVGCCN 389
Query: 206 LTLLNLEGCP-VTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
LT L+L C VT A + +++ + +L L L C + V +G +
Sbjct: 390 LTTLDLTCCRFVTDAAISTIANSCPNLACLKLESCDM---------------VTEIGLYQ 434
Query: 264 ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHLS 321
I CL+ LE L+L C G+ D L L+ L L+L T + GL H++
Sbjct: 435 IGSSCLM-------LEELDLTDCSGVNDIALKYLSRCSKLVRLKLGLCTNISDIGLAHIA 487
Query: 322 ----GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTH 376
LT L+ G DG G + L LNL +ITD GL +++L L+
Sbjct: 488 CNCPKLTELDLYRCVRIG-DDGLAALTTGCNKLAMLNLAYCNRITDAGLKCISNLGELSD 546
Query: 377 LDLFG-ARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS-SLTLLNLSQN 430
+L G + IT G A + NL L+ C L D G + + S +L +N+S
Sbjct: 547 FELRGLSNITSIGIKAVAVSCKRLANL-DLKHC-EKLDDTGFRALAFYSQNLLQINMSY- 603
Query: 431 CNLTDKTLELI 441
CN++D L L+
Sbjct: 604 CNVSDHVLWLL 614
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 16/187 (8%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHL 77
+ +++L+ C+ L L LG ++D + IA L +DL + D GL L
Sbjct: 453 VNDIALKYLSRCSKLVRLKLGLCTNISDIGLAHIACNCPKLTELDLYRCVRIGDDGLAAL 512
Query: 78 KD-CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVK 135
C+ L L+ +C +I+D GL+ + L L+ R + IT+ G+KA A L
Sbjct: 513 TTGCNKLAMLNLAYCNRITDAGLKCISNLGELSDFELRGLSNITSIGIKAVAVSCKRLAN 572
Query: 136 LDLERCTRIHG-GLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
LDL+ C ++ G L + L +N+ +CN ++D + L ++NLK LQ
Sbjct: 573 LDLKHCEKLDDTGFRALAFYSQNLLQINMSYCN-VSDHVLWLL--MSNLKRLQ------- 622
Query: 194 DSGIAYL 200
D+ + YL
Sbjct: 623 DAKLVYL 629
>gi|130774795|gb|ABO32412.1| InlA [Listeria monocytogenes]
gi|150371796|dbj|BAF65687.1| internalin A [Listeria monocytogenes]
gi|150371806|dbj|BAF65692.1| internalin A [Listeria monocytogenes]
gi|150371822|dbj|BAF65700.1| internalin A [Listeria monocytogenes]
gi|194326149|emb|CAQ77233.1| internalin A [Listeria monocytogenes]
gi|298359930|gb|ADI77544.1| internalin A [Listeria monocytogenes]
gi|298360322|gb|ADI77740.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|298359722|gb|ADI77440.1| truncated internalin A [Listeria monocytogenes]
gi|298359752|gb|ADI77455.1| truncated internalin A [Listeria monocytogenes]
gi|298359762|gb|ADI77460.1| truncated internalin A [Listeria monocytogenes]
gi|298359812|gb|ADI77485.1| truncated internalin A [Listeria monocytogenes]
gi|298359814|gb|ADI77486.1| truncated internalin A [Listeria monocytogenes]
gi|298359858|gb|ADI77508.1| truncated internalin A [Listeria monocytogenes]
gi|298359886|gb|ADI77522.1| truncated internalin A [Listeria monocytogenes]
gi|298359900|gb|ADI77529.1| truncated internalin A [Listeria monocytogenes]
gi|298359906|gb|ADI77532.1| truncated internalin A [Listeria monocytogenes]
gi|298359912|gb|ADI77535.1| truncated internalin A [Listeria monocytogenes]
gi|298359944|gb|ADI77551.1| truncated internalin A [Listeria monocytogenes]
gi|298359980|gb|ADI77569.1| truncated internalin A [Listeria monocytogenes]
gi|298359990|gb|ADI77574.1| truncated internalin A [Listeria monocytogenes]
gi|298359992|gb|ADI77575.1| truncated internalin A [Listeria monocytogenes]
gi|298359994|gb|ADI77576.1| truncated internalin A [Listeria monocytogenes]
gi|298360008|gb|ADI77583.1| truncated internalin A [Listeria monocytogenes]
gi|298360026|gb|ADI77592.1| truncated internalin A [Listeria monocytogenes]
gi|298360060|gb|ADI77609.1| truncated internalin A [Listeria monocytogenes]
gi|298360078|gb|ADI77618.1| truncated internalin A [Listeria monocytogenes]
gi|298360082|gb|ADI77620.1| truncated internalin A [Listeria monocytogenes]
gi|298360096|gb|ADI77627.1| truncated internalin A [Listeria monocytogenes]
gi|298360142|gb|ADI77650.1| truncated internalin A [Listeria monocytogenes]
gi|298360144|gb|ADI77651.1| truncated internalin A [Listeria monocytogenes]
gi|298360146|gb|ADI77652.1| truncated internalin A [Listeria monocytogenes]
gi|298360160|gb|ADI77659.1| truncated internalin A [Listeria monocytogenes]
gi|298360192|gb|ADI77675.1| truncated internalin A [Listeria monocytogenes]
gi|298360252|gb|ADI77705.1| truncated internalin A [Listeria monocytogenes]
gi|298360274|gb|ADI77716.1| truncated internalin A [Listeria monocytogenes]
gi|298360276|gb|ADI77717.1| truncated internalin A [Listeria monocytogenes]
gi|298360296|gb|ADI77727.1| truncated internalin A [Listeria monocytogenes]
gi|298360304|gb|ADI77731.1| truncated internalin A [Listeria monocytogenes]
gi|298360316|gb|ADI77737.1| truncated internalin A [Listeria monocytogenes]
gi|298360320|gb|ADI77739.1| truncated internalin A [Listeria monocytogenes]
gi|298360336|gb|ADI77747.1| truncated internalin A [Listeria monocytogenes]
gi|298360342|gb|ADI77750.1| truncated internalin A [Listeria monocytogenes]
gi|298360348|gb|ADI77753.1| truncated internalin A [Listeria monocytogenes]
gi|298360374|gb|ADI77766.1| truncated internalin A [Listeria monocytogenes]
gi|298360380|gb|ADI77769.1| truncated internalin A [Listeria monocytogenes]
gi|298360404|gb|ADI77781.1| truncated internalin A [Listeria monocytogenes]
gi|298360414|gb|ADI77786.1| truncated internalin A [Listeria monocytogenes]
gi|298360426|gb|ADI77792.1| truncated internalin A [Listeria monocytogenes]
gi|298360458|gb|ADI77808.1| truncated internalin A [Listeria monocytogenes]
gi|298360464|gb|ADI77811.1| truncated internalin A [Listeria monocytogenes]
gi|298360488|gb|ADI77823.1| truncated internalin A [Listeria monocytogenes]
gi|298360492|gb|ADI77825.1| truncated internalin A [Listeria monocytogenes]
gi|298360518|gb|ADI77838.1| truncated internalin A [Listeria monocytogenes]
gi|298360538|gb|ADI77848.1| truncated internalin A [Listeria monocytogenes]
gi|298360562|gb|ADI77860.1| truncated internalin A [Listeria monocytogenes]
gi|298360594|gb|ADI77876.1| truncated internalin A [Listeria monocytogenes]
gi|298360616|gb|ADI77887.1| truncated internalin A [Listeria monocytogenes]
gi|298360654|gb|ADI77906.1| truncated internalin A [Listeria monocytogenes]
gi|298360660|gb|ADI77909.1| truncated internalin A [Listeria monocytogenes]
gi|298360668|gb|ADI77913.1| truncated internalin A [Listeria monocytogenes]
gi|298360690|gb|ADI77924.1| truncated internalin A [Listeria monocytogenes]
gi|298360696|gb|ADI77927.1| truncated internalin A [Listeria monocytogenes]
gi|298360720|gb|ADI77939.1| truncated internalin A [Listeria monocytogenes]
gi|443428784|gb|AGC92191.1| truncated internalin A [Listeria monocytogenes]
gi|443428786|gb|AGC92192.1| truncated internalin A [Listeria monocytogenes]
gi|443428790|gb|AGC92194.1| truncated internalin A [Listeria monocytogenes]
gi|443428794|gb|AGC92196.1| truncated internalin A [Listeria monocytogenes]
gi|443428808|gb|AGC92203.1| truncated internalin A [Listeria monocytogenes]
gi|443428810|gb|AGC92204.1| truncated internalin A [Listeria monocytogenes]
gi|443428828|gb|AGC92213.1| truncated internalin A [Listeria monocytogenes]
gi|443428866|gb|AGC92232.1| truncated internalin A [Listeria monocytogenes]
gi|443428874|gb|AGC92236.1| truncated internalin A [Listeria monocytogenes]
gi|443428876|gb|AGC92237.1| truncated internalin A [Listeria monocytogenes]
Length = 699
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|148607496|gb|ABQ95524.1| InlA [Listeria monocytogenes]
Length = 730
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|427793023|gb|JAA61963.1| Putative f-box and leucine-rich repeat protein 14a, partial
[Rhipicephalus pulchellus]
Length = 372
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 149/312 (47%), Gaps = 53/312 (16%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL--KDCSNLQSLDF 88
+L +L L + D + IA L +DL G +DVT++GL HL NL+SL+
Sbjct: 82 SLTELNLSMCKQITDNSLGRIAQHLQGLERLDLGGCTDVTNTGL-HLIAWGLHNLRSLNL 140
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148
C +SD G+ HL G++ N+AI G + L L L+ C ++
Sbjct: 141 RSCRGVSDPGISHLAGINP--------NSAI---------GTLRLESLCLQDCQKLTDDA 183
Query: 149 VNLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQ 204
+ GL L SLN+ +C +TD+ +K + + L+ L + SC ++D G+AYL +G
Sbjct: 184 LRFISIGLQDLRSLNLSFCASVTDAGLKHAARMARLRELNLRSCDNISDLGLAYLAEGGS 243
Query: 205 KLTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+++ L++ C L + L L L+LN C +SDDG + +
Sbjct: 244 RISTLDVSFCDKVGDQGLLHASQGLFQLRSLSLNACPVSDDGIGRVA------------- 290
Query: 263 EITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRH 319
+ L +L++L+L CG + D+GL + L L+C++L T++ + GL
Sbjct: 291 ----------RSLGDLQTLHLGQCGRVTDKGLSLIADHLKQLRCIDLYGCTKITTVGLEK 340
Query: 320 LSGLTNLESINL 331
L L NL +NL
Sbjct: 341 LMQLPNLGVLNL 352
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 154/303 (50%), Gaps = 24/303 (7%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFA-GLINL 133
++ NL+SL+ C ++D L H ++ + +LT L+ IT + A L L
Sbjct: 50 IQGVPNLESLNMIGCFNLTDAWLNHAFVQDVHSLTELNLSMCKQITDNSLGRIAQHLQGL 109
Query: 134 VKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLK 183
+LDL CT + ++L GL L SLN++ C ++D + L+G+ L+
Sbjct: 110 ERLDLGGCTDVTNTGLHLIAWGLHNLRSLNLRSCRGVSDPGISHLAGINPNSAIGTLRLE 169
Query: 184 SLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-Q 239
SL + C K+TD + ++ GLQ L LNL C VT A L + + L LNL C
Sbjct: 170 SLCLQDCQKLTDDALRFISIGLQDLRSLNLSFCASVTDAGLKHAARMARLRELNLRSCDN 229
Query: 240 LSDDGCEKFSKIGS-LKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNL 296
+SD G ++ GS + L++ F +++ D+ L+H +GL L SL+L++C + D+G+ +
Sbjct: 230 ISDLGLAYLAEGGSRISTLDVSFCDKVGDQGLLHASQGLFQLRSLSLNACPVSDDGIGRV 289
Query: 297 T-GLCNLKCLELSDT-QVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKLAGLSSLKS 352
L +L+ L L +V GL ++ L L I+L T I+ L KL L +L
Sbjct: 290 ARSLGDLQTLHLGQCGRVTDKGLSLIADHLKQLRCIDLYGCTKITTVGLEKLMQLPNLGV 349
Query: 353 LNL 355
LNL
Sbjct: 350 LNL 352
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 95/303 (31%), Positives = 161/303 (53%), Gaps = 26/303 (8%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKL 206
++G+ LESLN+ C +TD+ + + + +L L +S C ++TD+ + + + LQ L
Sbjct: 50 IQGVPNLESLNMIGCFNLTDAWLNHAFVQDVHSLTELNLSMCKQITDNSLGRIAQHLQGL 109
Query: 207 TLLNLEGCP-VTAACLDSLS-ALGSLFYLNLNRCQ-LSDDGCEKF------SKIGSLKVL 257
L+L GC VT L ++ L +L LNL C+ +SD G S IG+L++
Sbjct: 110 ERLDLGGCTDVTNTGLHLIAWGLHNLRSLNLRSCRGVSDPGISHLAGINPNSAIGTLRLE 169
Query: 258 NLGFNE---ITDECLVHLK-GLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SDTQ 311
+L + +TD+ L + GL +L SLNL C + D GL + + L+ L L S
Sbjct: 170 SLCLQDCQKLTDDALRFISIGLQDLRSLNLSFCASVTDAGLKHAARMARLRELNLRSCDN 229
Query: 312 VGSSGLRHLS-GLTNLESINLSF-TGISD-GSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
+ GL +L+ G + + ++++SF + D G L GL L+SL+L+A ++D G+ +
Sbjct: 230 ISDLGLAYLAEGGSRISTLDVSFCDKVGDQGLLHASQGLFQLRSLSLNACPVSDDGIGRV 289
Query: 369 T-SLTGLTHLDLFG-ARITDSGAAYLR-NFKNLRSLEICG-GGLTDAGVKHIKDLSSLTL 424
SL L L L R+TD G + + + K LR +++ G +T G++ + L +L +
Sbjct: 290 ARSLGDLQTLHLGQCGRVTDKGLSLIADHLKQLRCIDLYGCTKITTVGLEKLMQLPNLGV 349
Query: 425 LNL 427
LNL
Sbjct: 350 LNL 352
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 93/178 (52%), Gaps = 18/178 (10%)
Query: 320 LSGLTNLESINL-SFTGISDGSLRK--LAGLSSLKSLNLDA-RQITDTGLAALTS-LTGL 374
+ G+ NLES+N+ ++D L + + SL LNL +QITD L + L GL
Sbjct: 50 IQGVPNLESLNMIGCFNLTDAWLNHAFVQDVHSLTELNLSMCKQITDNSLGRIAQHLQGL 109
Query: 375 THLDLFG-ARITDSGAAYLR-NFKNLRSLEICG-GGLTDAGVKHIKDL---SSLTLLNLS 428
LDL G +T++G + NLRSL + G++D G+ H+ + S++ L L
Sbjct: 110 ERLDLGGCTDVTNTGLHLIAWGLHNLRSLNLRSCRGVSDPGISHLAGINPNSAIGTLRLE 169
Query: 429 ----QNCN-LTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 479
Q+C LTD L IS GL L SLN+S + +T AGL+H + LR L L SC
Sbjct: 170 SLCLQDCQKLTDDALRFISIGLQDLRSLNLSFCASVTDAGLKHAARMARLRELNLRSC 227
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 125/244 (51%), Gaps = 30/244 (12%)
Query: 272 LKGLTNLESLNLDSCGIGDEGLVN---------LTGLCNLKCLELSDTQVGSSGLRHLSG 322
++G+ NLESLN+ C + +N LT L C +++D +G +HL G
Sbjct: 50 IQGVPNLESLNMIGCFNLTDAWLNHAFVQDVHSLTELNLSMCKQITDNSLGRIA-QHLQG 108
Query: 323 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALT-----SLTGL 374
L E ++L T +++ L +A GL +L+SLNL + R ++D G++ L S G
Sbjct: 109 L---ERLDLGGCTDVTNTGLHLIAWGLHNLRSLNLRSCRGVSDPGISHLAGINPNSAIGT 165
Query: 375 THLDLFG----ARITDSGAAYLR-NFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLS 428
L+ ++TD ++ ++LRSL + +TDAG+KH ++ L LNL
Sbjct: 166 LRLESLCLQDCQKLTDDALRFISIGLQDLRSLNLSFCASVTDAGLKHAARMARLRELNLR 225
Query: 429 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAND 485
N++D L L G + + +L+VS ++ GL H + L LRSL+L +C V+ +
Sbjct: 226 SCDNISDLGLAYLAEGGSRISTLDVSFCDKVGDQGLLHASQGLFQLRSLSLNACPVSDDG 285
Query: 486 IKRL 489
I R+
Sbjct: 286 IGRV 289
>gi|371942104|gb|AEX60864.1| internaline [Listeria monocytogenes]
Length = 790
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|130774793|gb|ABO32411.1| InlA [Listeria monocytogenes]
gi|194239384|emb|CAQ76832.1| internalin A [Listeria monocytogenes]
Length = 797
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|112961793|gb|ABI28548.1| internalin A [Listeria monocytogenes]
Length = 696
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 123/386 (31%), Positives = 178/386 (46%), Gaps = 60/386 (15%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S + +TD + LKD + L + N QI+D + L LSNLT L+ NN IT
Sbjct: 1 FSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQIT--D 52
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L NL +L+L T + L GL L+ L+ N +TD +KPL+ LT L+
Sbjct: 53 IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLANLTTLE 106
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQL 240
L IS +KV+D + L KLT NLE T + ++ LG +L L+LN QL
Sbjct: 107 RLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQL 159
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D G + + +L L+L N+I++ L L GLT L L L + I + + L GL
Sbjct: 160 KDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLT 213
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------------- 343
L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 214 ALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD 271
Query: 344 ---LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN------ 394
LA L+++ L+ QI+D L L +LT +T L L T+ Y N
Sbjct: 272 VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNT 329
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLS 420
KN+ I ++D G D++
Sbjct: 330 VKNVTGALIAPATISDGGSYAEPDIT 355
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 113/234 (48%), Gaps = 41/234 (17%)
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
N++TD + LK LT L + +++ I D + L L NL L L + Q+ + + L
Sbjct: 4 NQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLTGLTLFNNQI--TDIDPLK 57
Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
LTNL + LS ISD + L+GL+SL+ L+ Q+TD L L +LT L LD+
Sbjct: 58 NLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD--LKPLANLTTLERLDISS 112
Query: 382 ARITD-SGAAYLRNFK-------------------NLRSLEICGGGLTDAGVKHIKDLSS 421
+++D S A L N + NL L + G L D G + L++
Sbjct: 113 NKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTN 170
Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
LT L+L+ N L +SGLT L L + ++I+ ++ PL L +LT
Sbjct: 171 LTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAGLTALT 216
>gi|371942138|gb|AEX60881.1| internaline [Listeria monocytogenes]
Length = 789
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNAPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D + L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|223698664|gb|ACN19016.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 341
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 342 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 7 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 60 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 223
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 224 -NISPLAGLTALT 235
>gi|443428838|gb|AGC92218.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|371942136|gb|AEX60880.1| internaline [Listeria monocytogenes]
Length = 789
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|290350830|dbj|BAI78336.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LTPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 123/255 (48%), Gaps = 48/255 (18%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQN--CNLTDKTLELISGLTGLVSLNVSNSRITSA 460
+ G L D G + L++LT L+L+ N NLT +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQISNLTP-----LSGLTKLTELKLGANQIS-- 308
Query: 461 GLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ---NISPLAGLTALT 320
>gi|443688071|gb|ELT90873.1| hypothetical protein CAPTEDRAFT_165456 [Capitella teleta]
Length = 642
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 129/497 (25%), Positives = 224/497 (45%), Gaps = 68/497 (13%)
Query: 18 RC--LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGL 74
RC +T ++ + R+C LQDL L + P ++D + ++ ++ +++S S +TD+ L
Sbjct: 171 RCERITSLTFYSIRECRNLQDLNLSECPALDDDSLKMVLEGCKIIIYLNISHSLITDASL 230
Query: 75 IHL-KDCSNLQSLDFNFCIQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFAGL 130
+ K C NLQ L FC++ SD GL++L L L + +T G+ +
Sbjct: 231 RSISKYCLNLQYLSLAFCLRYSDKGLQYLANGESAKRLNHLDISGCSQVTPNGLAKLS-- 288
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
E C+ + L+N +ES + ITD + K L ++ L S +S
Sbjct: 289 --------EGCSDVQTLLLN-----DIESFDDACLEAITD-NCKNLRNISFLGSHNLS-- 332
Query: 191 KVTDSGIAYLKGLQKLTLLNLEG-CPVTAACL----DSLSALGSLFYLNLNRCQLSDDGC 245
D+ + + +KL +L ++ C +T S L L+ ++ +R ++D
Sbjct: 333 ---DNALKNVATSKKLQMLKIDSNCKITDITFKYIGKSCHELRHLYLVDCHR--ITDLTL 387
Query: 246 EKFSKIGSLKVLNLG-FNEITD---ECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC 300
+ S+ +L V+NL ITD LV L+ LNL +C +GD LVN+ C
Sbjct: 388 KVLSQCRNLTVVNLADCVRITDTGVRYLVESSCGNKLQELNLTNCIRVGDIALVNIHKRC 447
Query: 301 -NLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DA 357
NL L L + + +G+ L +L ++++S D L L LK +NL +
Sbjct: 448 HNLTYLHLCFCEHISEAGIELLGQTHSLTALDISGCNCGDAGLSSLGNNIRLKDVNLSEC 507
Query: 358 RQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
ITD GL T + LDL ++ GA +++L C LT +
Sbjct: 508 SAITDLGLQKFAQQCTEIERLDLSHCQMITDGA--------IKNLAFCCRMLTHLSLAGC 559
Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS-RITSAGLRHLKP-LKNLRSL 474
K L+ L++ LS C+ L+ L++S S IT +++LK K L++L
Sbjct: 560 KLLTDLSVQYLSGVCHY-------------LLYLDISGSLHITDKSMKYLKKGCKKLQTL 606
Query: 475 TLESC-KVTANDIKRLQ 490
+ C ++ + + ++Q
Sbjct: 607 IMLYCSHISKHAVHKMQ 623
>gi|404412528|ref|YP_006698115.1| internalin A [Listeria monocytogenes SLCC7179]
gi|298360000|gb|ADI77579.1| internalin A [Listeria monocytogenes]
gi|298360676|gb|ADI77917.1| internalin A [Listeria monocytogenes]
gi|404238227|emb|CBY59628.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC7179]
gi|443428842|gb|AGC92220.1| internalin A [Listeria monocytogenes]
gi|443428848|gb|AGC92223.1| internalin A [Listeria monocytogenes]
gi|443428858|gb|AGC92228.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|158298684|ref|XP_318863.4| AGAP009775-PA [Anopheles gambiae str. PEST]
gi|157014003|gb|EAA14468.4| AGAP009775-PA [Anopheles gambiae str. PEST]
Length = 547
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 150/337 (44%), Gaps = 46/337 (13%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH----GGLVNLKGLMKLES 159
GL L ++ RNN IT M+ F G NL++LDL R R+ G +LK L L
Sbjct: 110 GLVRLKTIDLSRNN-ITQLAMENFRGQDNLIELDLSR-NRLDNIASGTFAHLKELKTLHL 167
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
++ N IT+ + + L LK L +S + + D K +Q L +L + GC ++
Sbjct: 168 ID----NSITEFNQRLFLHLAKLKHLDLSYNSIDDLPPEVFKDVQDLKILRVRGCRLSNI 223
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE---ITDECLVHLKGLT 276
+ L L L+L + Q+ E+F + L+ L L N+ I DE +H KGLT
Sbjct: 224 NPQIYNILSHLTELDLGQNQIKFLDKEEFKDLRHLQTLRLDGNQLSVIIDELFIHQKGLT 283
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
L+ I D N L NL L+ S ++ L NL+++N+S
Sbjct: 284 LLDISRNRLAKIADRAFEN---LANLTFLDASYNKLSHIEPVCFRPLRNLQTLNIS---- 336
Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR--- 393
++ LD ++ DT + + ++TGL + D G L
Sbjct: 337 --------------GNIQLDLGEMEDT-INVIKNITGLM--------VADMGTLPLNLFS 373
Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
F++L +L + G + + ++ I+ L+ L L+LS+N
Sbjct: 374 PFRHLSALNLSGNHIDNFTLQIIEPLNQLEFLDLSRN 410
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 132/318 (41%), Gaps = 23/318 (7%)
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L+ L+I + V G GL +L ++L +T +++ +L L+L+R +L
Sbjct: 90 LEILRIIDANVPSVGDRSFWGLVRLKTIDLSRNNITQLAMENFRGQDNLIELDLSRNRLD 149
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
+ F+ + LK L+L N IT+ L L+ L+L I D + +
Sbjct: 150 NIASGTFAHLKELKTLHLIDNSITEFNQRLFLHLAKLKHLDLSYNSIDDLPPEVFKDVQD 209
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
LK L + ++ + + + L++L ++L I + L L++L LD Q++
Sbjct: 210 LKILRVRGCRLSNINPQIYNILSHLTELDLGQNQIKFLDKEEFKDLRHLQTLRLDGNQLS 269
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421
GLT LD+ R+ N NL L+ L+ + L +
Sbjct: 270 VIIDELFIHQKGLTLLDISRNRLAKIADRAFENLANLTFLDASYNKLSHIEPVCFRPLRN 329
Query: 422 LTLLNLSQNCNL----TDKTLELISGLTGLV-------------------SLNVSNSRIT 458
L LN+S N L + T+ +I +TGL+ +LN+S + I
Sbjct: 330 LQTLNISGNIQLDLGEMEDTINVIKNITGLMVADMGTLPLNLFSPFRHLSALNLSGNHID 389
Query: 459 SAGLRHLKPLKNLRSLTL 476
+ L+ ++PL L L L
Sbjct: 390 NFTLQIIEPLNQLEFLDL 407
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 3/160 (1%)
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
+ K L L ++ + +GD GL LK ++LS + + + G NL ++
Sbjct: 86 YFKKLEILRIIDANVPSVGDRSF---WGLVRLKTIDLSRNNITQLAMENFRGQDNLIELD 142
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
LS + + + A L LK+L+L IT+ L L HLDL I D
Sbjct: 143 LSRNRLDNIASGTFAHLKELKTLHLIDNSITEFNQRLFLHLAKLKHLDLSYNSIDDLPPE 202
Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
++ ++L+ L + G L++ + LS LT L+L QN
Sbjct: 203 VFKDVQDLKILRVRGCRLSNINPQIYNILSHLTELDLGQN 242
>gi|294358395|gb|ADE73850.1| InlA [Listeria monocytogenes]
Length = 800
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|294358401|gb|ADE73853.1| InlA [Listeria monocytogenes]
Length = 800
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LAGLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVNGALIAPATISDGGSYAEPDIT 459
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 79/175 (45%), Gaps = 46/175 (26%)
Query: 316 GLRHLSG---LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSL 371
G++ + G L NL IN S ++D + L L+ L + ++ QI D T LA LT+L
Sbjct: 87 GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNL 144
Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
TGLT LF +ITD L+N NL LE+ I D+S+L
Sbjct: 145 TGLT---LFNNQITDLDP--LKNLTNLNRLELSSN--------TISDISAL--------- 182
Query: 432 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 486
SGLT L L+ N + LKPL NL TLE +++N +
Sbjct: 183 ----------SGLTSLQQLSFGNQ------VTDLKPLANLT--TLERLDISSNKV 219
>gi|386052707|ref|YP_005970265.1| internalin A [Listeria monocytogenes Finland 1998]
gi|130774801|gb|ABO32414.1| InlA [Listeria monocytogenes]
gi|130774805|gb|ABO32415.1| InlA [Listeria monocytogenes]
gi|130774807|gb|ABO32416.1| InlA [Listeria monocytogenes]
gi|150371724|dbj|BAF65677.1| internalin A [Listeria monocytogenes]
gi|150371780|dbj|BAF65679.1| internalin A [Listeria monocytogenes]
gi|150371784|dbj|BAF65681.1| internalin A [Listeria monocytogenes]
gi|150371788|dbj|BAF65683.1| internalin A [Listeria monocytogenes]
gi|150371790|dbj|BAF65684.1| internalin A [Listeria monocytogenes]
gi|150371792|dbj|BAF65685.1| internalin A [Listeria monocytogenes]
gi|150371798|dbj|BAF65688.1| internalin A [Listeria monocytogenes]
gi|150371802|dbj|BAF65690.1| internalin A [Listeria monocytogenes]
gi|150371808|dbj|BAF65693.1| internalin A [Listeria monocytogenes]
gi|150371814|dbj|BAF65696.1| internalin A [Listeria monocytogenes]
gi|150371818|dbj|BAF65698.1| internalin A [Listeria monocytogenes]
gi|150371824|dbj|BAF65701.1| internalin A [Listeria monocytogenes]
gi|150371830|dbj|BAF65704.1| internalin A [Listeria monocytogenes]
gi|150371832|dbj|BAF65705.1| internalin A [Listeria monocytogenes]
gi|150371834|dbj|BAF65706.1| internalin A [Listeria monocytogenes]
gi|150371836|dbj|BAF65707.1| internalin A [Listeria monocytogenes]
gi|150371838|dbj|BAF65708.1| internalin A [Listeria monocytogenes]
gi|150371844|dbj|BAF65711.1| internalin A [Listeria monocytogenes]
gi|150371848|dbj|BAF65713.1| internalin A [Listeria monocytogenes]
gi|150371850|dbj|BAF65714.1| internalin A [Listeria monocytogenes]
gi|150371854|dbj|BAF65716.1| internalin A [Listeria monocytogenes]
gi|150371864|dbj|BAF65721.1| internalin A [Listeria monocytogenes]
gi|150371870|dbj|BAF65724.1| internalin A [Listeria monocytogenes]
gi|290350828|dbj|BAI78335.1| internalin A [Listeria monocytogenes]
gi|290350832|dbj|BAI78337.1| internalin A [Listeria monocytogenes]
gi|290350834|dbj|BAI78338.1| internalin A [Listeria monocytogenes]
gi|290350840|dbj|BAI78341.1| internalin A [Listeria monocytogenes]
gi|298359802|gb|ADI77480.1| internalin A [Listeria monocytogenes]
gi|298359828|gb|ADI77493.1| internalin A [Listeria monocytogenes]
gi|298359876|gb|ADI77517.1| internalin A [Listeria monocytogenes]
gi|298359878|gb|ADI77518.1| internalin A [Listeria monocytogenes]
gi|298359918|gb|ADI77538.1| internalin A [Listeria monocytogenes]
gi|298359964|gb|ADI77561.1| internalin A [Listeria monocytogenes]
gi|298359966|gb|ADI77562.1| internalin A [Listeria monocytogenes]
gi|298360014|gb|ADI77586.1| internalin A [Listeria monocytogenes]
gi|298360038|gb|ADI77598.1| internalin A [Listeria monocytogenes]
gi|298360084|gb|ADI77621.1| internalin A [Listeria monocytogenes]
gi|298360104|gb|ADI77631.1| internalin A [Listeria monocytogenes]
gi|298360134|gb|ADI77646.1| internalin A [Listeria monocytogenes]
gi|298360170|gb|ADI77664.1| internalin A [Listeria monocytogenes]
gi|298360178|gb|ADI77668.1| internalin A [Listeria monocytogenes]
gi|298360214|gb|ADI77686.1| internalin A [Listeria monocytogenes]
gi|298360242|gb|ADI77700.1| internalin A [Listeria monocytogenes]
gi|298360244|gb|ADI77701.1| internalin A [Listeria monocytogenes]
gi|298360254|gb|ADI77706.1| internalin A [Listeria monocytogenes]
gi|298360278|gb|ADI77718.1| internalin A [Listeria monocytogenes]
gi|298360310|gb|ADI77734.1| internalin A [Listeria monocytogenes]
gi|298360334|gb|ADI77746.1| internalin A [Listeria monocytogenes]
gi|298360338|gb|ADI77748.1| internalin A [Listeria monocytogenes]
gi|298360376|gb|ADI77767.1| internalin A [Listeria monocytogenes]
gi|298360384|gb|ADI77771.1| internalin A [Listeria monocytogenes]
gi|298360436|gb|ADI77797.1| internalin A [Listeria monocytogenes]
gi|298360532|gb|ADI77845.1| internalin A [Listeria monocytogenes]
gi|298360542|gb|ADI77850.1| internalin A [Listeria monocytogenes]
gi|298360552|gb|ADI77855.1| internalin A [Listeria monocytogenes]
gi|298360564|gb|ADI77861.1| internalin A [Listeria monocytogenes]
gi|298360568|gb|ADI77863.1| internalin A [Listeria monocytogenes]
gi|298360596|gb|ADI77877.1| internalin A [Listeria monocytogenes]
gi|298360666|gb|ADI77912.1| internalin A [Listeria monocytogenes]
gi|298360710|gb|ADI77934.1| internalin A [Listeria monocytogenes]
gi|346645358|gb|AEO37983.1| internalin A [Listeria monocytogenes Finland 1998]
gi|443428778|gb|AGC92188.1| internalin A [Listeria monocytogenes]
gi|443428804|gb|AGC92201.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|443428862|gb|AGC92230.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL+ L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLISLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LGSLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 120/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLISLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LGSLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 80/177 (45%), Gaps = 50/177 (28%)
Query: 316 GLRHLSG---LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSL 371
G++ + G L NL IN S ++D + L L+ L + ++ QI D T LA LT+L
Sbjct: 87 GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNL 144
Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
TGLT LF +ITD L+N NL LE+ ++D
Sbjct: 145 TGLT---LFNNQITDLDP--LKNLTNLNRLELSSNTISD--------------------- 178
Query: 432 NLTDKTLELISGLTGLVSLNVSNSRITSAG--LRHLKPLKNLRSLTLESCKVTANDI 486
IS L+GL+SL + S G + LKPL NL TLE +++N +
Sbjct: 179 ---------ISALSGLISL-----QQLSFGNQVTDLKPLANLT--TLERLDISSNKV 219
>gi|290350826|dbj|BAI78334.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ NN
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + L NL +L+L T + L GL L+ L+ N +TD +KPL+
Sbjct: 154 IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
N QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370
Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
LA L+++ L+ QI+D L L +LT +T L L T++ Y N
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428
Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
KN+ I ++D G D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|219821381|gb|ACL37832.1| internalin A [Listeria monocytogenes]
gi|219821384|gb|ACL37834.1| internalin A [Listeria monocytogenes]
Length = 741
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +K++D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKLSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 252
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 253 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 310
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 311 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKV 368
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 369 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 34 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 86
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 87 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 141
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 142 --LKPLANLTTLERLDISSNKLSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 199
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 200 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 250
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 251 -NISPLAGLTALT 262
>gi|371942142|gb|AEX60883.1| internaline [Listeria monocytogenes]
Length = 790
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D + L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|167862032|gb|ACA05715.1| InlA [Listeria monocytogenes]
Length = 800
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|194239392|emb|CAQ76836.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|130774825|gb|ABO32425.1| InlA [Listeria monocytogenes]
Length = 800
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|371942074|gb|AEX60849.1| internaline [Listeria monocytogenes]
gi|371942102|gb|AEX60863.1| internaline [Listeria monocytogenes]
gi|371942114|gb|AEX60869.1| internaline [Listeria monocytogenes]
gi|371942124|gb|AEX60874.1| internaline [Listeria monocytogenes]
Length = 790
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D + L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 459 SAGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|340052077|emb|CBY84390.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|313485072|gb|ADR53007.1| InlA [Listeria monocytogenes]
Length = 800
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|223698607|gb|ACN18978.1| internalin A [Listeria monocytogenes]
gi|223698703|gb|ACN19042.1| internalin A [Listeria monocytogenes]
gi|223698760|gb|ACN19080.1| internalin A [Listeria monocytogenes]
gi|223698907|gb|ACN19178.1| internalin A [Listeria monocytogenes]
gi|223698910|gb|ACN19180.1| internalin A [Listeria monocytogenes]
gi|223698916|gb|ACN19184.1| internalin A [Listeria monocytogenes]
gi|223698919|gb|ACN19186.1| internalin A [Listeria monocytogenes]
gi|223698964|gb|ACN19216.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 341
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 342 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 7 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 60 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 223
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 224 -NISPLAGLTALT 235
>gi|130774819|gb|ABO32422.1| InlA [Listeria monocytogenes]
gi|167861894|gb|ACA05646.1| InlA [Listeria monocytogenes]
gi|167861946|gb|ACA05672.1| InlA [Listeria monocytogenes]
gi|167861948|gb|ACA05673.1| InlA [Listeria monocytogenes]
gi|194239402|emb|CAQ76841.1| internalin A [Listeria monocytogenes]
gi|298360052|gb|ADI77605.1| internalin A [Listeria monocytogenes]
gi|298360164|gb|ADI77661.1| internalin A [Listeria monocytogenes]
gi|298360372|gb|ADI77765.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|22347554|gb|AAM95922.1| internalin A precursor [Listeria monocytogenes]
Length = 741
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 254
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 255 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 312
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 313 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 370
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 371 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 403
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 36 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 88
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 89 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 143
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 144 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 201
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 202 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 252
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 253 -NISPLAGLTALT 264
>gi|328698260|ref|XP_001948969.2| PREDICTED: leucine-rich repeats and immunoglobulin-like domains
protein 1-like [Acyrthosiphon pisum]
Length = 537
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 94/321 (29%), Positives = 145/321 (45%), Gaps = 9/321 (2%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA---ACLD 222
N I D + K L+ LT L++L +S + + + L KL LL L+ + +
Sbjct: 77 NKIRDIEPKSLTHLTELETLILSHNIIREMKNGAFANLSKLRLLYLDANEIENIENGVFN 136
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
+L+ L L YLN N+ D F + LK L+L N+I D L LT LE L
Sbjct: 137 NLTTLEKL-YLNYNKIHKLDSDI--FIGLTKLKTLDLSNNKIRDIEPKSLTHLTELEILI 193
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
L + I D + T L L+ L L ++ + + LT+LE++ L+F I
Sbjct: 194 LSNNKISDVKIGVFTNLSKLRLLYLDLNEIENIETGVFNNLTSLENLYLNFNNIHKLDSE 253
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
GL+ L +L L +I D L++LT L L L +I+D N NLR+L
Sbjct: 254 MFIGLTKLNTLYLSYNKIRDIVPKLLSNLTELKVLSLSNNKISDVKIGAFTNLSNLRTLS 313
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQN-CNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
+ + + +L+SL L L N + D E+ GLT L L++ N+ I +
Sbjct: 314 LNENKIENLETGVFNNLTSLENLYLDYNRIHYLDS--EMFKGLTKLNELHLHNNMIRNIP 371
Query: 462 LRHLKPLKNLRSLTLESCKVT 482
L +L +LTL + +T
Sbjct: 372 RGIFDSLTSLGNLTLRNVPLT 392
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 97/353 (27%), Positives = 145/353 (41%), Gaps = 36/353 (10%)
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL--INLVKLDLERCT 142
L FN I L HL L L +N I AFA L + L+ LD
Sbjct: 73 ELSFNKIRDIEPKSLTHLTELETL----ILSHNIIREMKNGAFANLSKLRLLYLDANEIE 128
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
I G+ N L LE L + + N I D GLT LK+L +S +K+ D
Sbjct: 129 NIENGVFN--NLTTLEKLYLNY-NKIHKLDSDIFIGLTKLKTLDLSNNKIRD-------- 177
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+E SL+ L L L L+ ++SD F+ + L++L L N
Sbjct: 178 --------IEP--------KSLTHLTELEILILSNNKISDVKIGVFTNLSKLRLLYLDLN 221
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
EI + LT+LE+L L+ I GL L L LS ++ + LS
Sbjct: 222 EIENIETGVFNNLTSLENLYLNFNNIHKLDSEMFIGLTKLNTLYLSYNKIRDIVPKLLSN 281
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
LT L+ ++LS ISD + LS+L++L+L+ +I + +LT L +L L
Sbjct: 282 LTELKVLSLSNNKISDVKIGAFTNLSNLRTLSLNENKIENLETGVFNNLTSLENLYLDYN 341
Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAG---VKHIKDLSSLTLLNLSQNCN 432
RI + + L L + + + + L +LTL N+ C+
Sbjct: 342 RIHYLDSEMFKGLTKLNELHLHNNMIRNIPRGIFDSLTSLGNLTLRNVPLTCD 394
>gi|298359950|gb|ADI77554.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|22347572|gb|AAM95931.1| internalin A precursor [Listeria monocytogenes]
Length = 741
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 173/376 (46%), Gaps = 58/376 (15%)
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
+ LKD + L + N QI+D + L L+NLT L+ NN IT + L NL
Sbjct: 57 ITPLKDLTKLVDIVMNNN-QITD--ISPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNL 110
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+L+L T + L GL L+ L+ N +TD +KPL+ LT L+ L IS +KV+
Sbjct: 111 NRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLERLDISSNKVS 164
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSK 250
D + L KLT NLE T + ++ LG +L L+LN QL D G +
Sbjct: 165 DISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LAS 215
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+ +L L+L N+I++ L L GLT L L L + I + + L GL L LEL++
Sbjct: 216 LTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNEN 271
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK----------------LAGLSSL 350
Q+ + +S L NL + L F ISD SL K LA L+++
Sbjct: 272 QL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNI 329
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEIC 404
L+ QI+D L L +LT +T L L T+ Y N KN+ I
Sbjct: 330 NWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKTNVSIPNTVKNVTGALIA 387
Query: 405 GGGLTDAGVKHIKDLS 420
++D G D++
Sbjct: 388 PATISDGGSYAEPDIT 403
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 123/253 (48%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD----EGLVNLTG 298
DG E + +L +N GFN++TD + LK LT L + +++ I D L NLTG
Sbjct: 36 DGLEY---LNNLTQINFGFNQLTD--ITPLKDLTKLVDIVMNNNQITDISPLANLTNLTG 90
Query: 299 LC----------------NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
L NL LELS + S + LSGLTNL+ LSF G L+
Sbjct: 91 LTLFNNQITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVTDLK 145
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
LA L++L+ L++ + +++D ++ L LT L L +I+D L NL L
Sbjct: 146 PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELS 201
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 202 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 252
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 253 -NISPLAGLTALT 264
>gi|47096455|ref|ZP_00234048.1| internalin A precursor [Listeria monocytogenes str. 1/2a F6854]
gi|254913677|ref|ZP_05263689.1| internalin A [Listeria monocytogenes J2818]
gi|254937992|ref|ZP_05269689.1| internalin A [Listeria monocytogenes F6900]
gi|386046091|ref|YP_005964423.1| internalin A [Listeria monocytogenes J0161]
gi|47015176|gb|EAL06116.1| internalin A precursor [Listeria monocytogenes str. 1/2a F6854]
gi|194239410|emb|CAQ76845.1| internalin A [Listeria monocytogenes]
gi|223006792|gb|ACM69353.1| internalin A [Listeria monocytogenes]
gi|223006794|gb|ACM69354.1| internalin A [Listeria monocytogenes]
gi|258610604|gb|EEW23212.1| internalin A [Listeria monocytogenes F6900]
gi|293591690|gb|EFG00025.1| internalin A [Listeria monocytogenes J2818]
gi|298359952|gb|ADI77555.1| internalin A [Listeria monocytogenes]
gi|298359956|gb|ADI77557.1| internalin A [Listeria monocytogenes]
gi|298359986|gb|ADI77572.1| internalin A [Listeria monocytogenes]
gi|298360086|gb|ADI77622.1| internalin A [Listeria monocytogenes]
gi|298360130|gb|ADI77644.1| internalin A [Listeria monocytogenes]
gi|298360206|gb|ADI77682.1| internalin A [Listeria monocytogenes]
gi|298360572|gb|ADI77865.1| internalin A [Listeria monocytogenes]
gi|298360644|gb|ADI77901.1| internalin A [Listeria monocytogenes]
gi|345533082|gb|AEO02523.1| internalin A [Listeria monocytogenes J0161]
gi|443428774|gb|AGC92186.1| internalin A [Listeria monocytogenes]
gi|443428776|gb|AGC92187.1| internalin A [Listeria monocytogenes]
gi|443428868|gb|AGC92233.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|16802477|ref|NP_463962.1| internalin A [Listeria monocytogenes EGD-e]
gi|386049359|ref|YP_005967350.1| internalin-A [Listeria monocytogenes FSL R2-561]
gi|404282867|ref|YP_006683764.1| internalin A [Listeria monocytogenes SLCC2372]
gi|403399437|sp|P0DJM0.1|INLA_LISMO RecName: Full=Internalin-A; Flags: Precursor
gi|12054782|emb|CAC20628.1| internalin A [Listeria monocytogenes]
gi|16409810|emb|CAC98512.1| Internalin A [Listeria monocytogenes EGD-e]
gi|130774817|gb|ABO32421.1| InlA [Listeria monocytogenes]
gi|130774821|gb|ABO32423.1| InlA [Listeria monocytogenes]
gi|130774823|gb|ABO32424.1| InlA [Listeria monocytogenes]
gi|150371782|dbj|BAF65680.1| internalin A [Listeria monocytogenes]
gi|150371794|dbj|BAF65686.1| internalin A [Listeria monocytogenes]
gi|150371804|dbj|BAF65691.1| internalin A [Listeria monocytogenes]
gi|150371820|dbj|BAF65699.1| internalin A [Listeria monocytogenes]
gi|150371846|dbj|BAF65712.1| internalin A [Listeria monocytogenes]
gi|150371852|dbj|BAF65715.1| internalin A [Listeria monocytogenes]
gi|150371856|dbj|BAF65717.1| internalin A [Listeria monocytogenes]
gi|150371860|dbj|BAF65719.1| internalin A [Listeria monocytogenes]
gi|150371868|dbj|BAF65723.1| internalin A [Listeria monocytogenes]
gi|167861980|gb|ACA05689.1| InlA [Listeria monocytogenes]
gi|194239382|emb|CAQ76831.1| internalin A [Listeria monocytogenes]
gi|298359818|gb|ADI77488.1| internalin A [Listeria monocytogenes]
gi|298359832|gb|ADI77495.1| internalin A [Listeria monocytogenes]
gi|298360054|gb|ADI77606.1| internalin A [Listeria monocytogenes]
gi|298360128|gb|ADI77643.1| internalin A [Listeria monocytogenes]
gi|298360212|gb|ADI77685.1| internalin A [Listeria monocytogenes]
gi|298360216|gb|ADI77687.1| internalin A [Listeria monocytogenes]
gi|298360256|gb|ADI77707.1| internalin A [Listeria monocytogenes]
gi|298360522|gb|ADI77840.1| internalin A [Listeria monocytogenes]
gi|346423205|gb|AEO24730.1| internalin-A [Listeria monocytogenes FSL R2-561]
gi|404232369|emb|CBY53772.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC2372]
Length = 800
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|298360234|gb|ADI77696.1| internalin A [Listeria monocytogenes]
gi|298360500|gb|ADI77829.1| internalin A [Listeria monocytogenes]
gi|298360708|gb|ADI77933.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 122/391 (31%), Positives = 183/391 (46%), Gaps = 60/391 (15%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ NN
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + L NL +L+L T + L GL L+ L+ N +TD +KPL+
Sbjct: 154 IT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
N QL D G + + +L L+L N+I++ L L GLT L L L + I + + +
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISS 312
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNDISDISPVSSLTKLQRLFFYN 370
Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
LA L+++ L+ QI+D L L +LT +T L L T++ Y N
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428
Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
KN+ I ++D G D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 126/270 (46%), Gaps = 56/270 (20%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I++
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISS 312
Query: 460 -AGLRHL-------------KPLKNLRSLT 475
AGL L P+ NL++LT
Sbjct: 313 LAGLTALTNLELNENQLEDISPISNLKNLT 342
>gi|29423725|gb|AAO73556.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 41 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 94
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 95 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 146
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +K++D + L KLT NLE T + ++ LG +L L
Sbjct: 147 ANLTTLERLDISSNKLSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 199
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 200 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 253
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 254 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 311
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 312 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKV 369
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 370 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 402
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 35 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 87
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 88 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 142
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 143 --LKPLANLTTLERLDISSNKLSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 200
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 201 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 251
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 252 -NISPLAGLTALT 263
>gi|223698700|gb|ACN19040.1| truncated internalin A [Listeria monocytogenes]
Length = 599
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 341
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 342 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 7 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 60 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 223
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 224 -NISPLAGLTALT 235
>gi|56797877|emb|CAH04900.1| internalin A [Listeria monocytogenes]
Length = 792
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 123/391 (31%), Positives = 180/391 (46%), Gaps = 60/391 (15%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++ S + +TD + LKD + L + N QI+D + L SNLT L+ NN
Sbjct: 92 LTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANSSNLTGLTLF-NNQ 145
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + L NL +L+L T + L GL L+ L+ N +TD +KPL+
Sbjct: 146 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 197
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L+L
Sbjct: 198 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 250
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
N QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 251 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 304
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 305 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 362
Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
LA L+++ L+ QI+D L L +LT +T L L T+ Y N
Sbjct: 363 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKVNV 420
Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
KN+ I ++D G D++
Sbjct: 421 SIPNTVKNVTGALIAPATISDGGSYAEPDIT 451
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 108/389 (27%), Positives = 167/389 (42%), Gaps = 96/389 (24%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T +S + A+ MK G N+ + DL++ T +
Sbjct: 16 WINTSNGTNAQAATITQDTPISQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 75
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + LE LN NL + S +++TD I LK L KL
Sbjct: 76 DRLGIKSIDGLEYLN-------------------NLTQINFSNNQLTD--ITPLKDLTKL 114
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+D L +N Q++D + +L L L N+ITD
Sbjct: 115 --------------VDIL----------MNNNQIAD--ITPLANSSNLTGLTLFNNQITD 148
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
+ LK LTNL L L S I D + L+GL +L+ L + QV + L+ L+ LT L
Sbjct: 149 --IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPLANLTTL 201
Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
E +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 202 ERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-------- 246
Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 446
L + G L D G + L++LT L+L+ N L +SGLT
Sbjct: 247 -------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTK 288
Query: 447 LVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
L L + ++I+ ++ PL L +LT
Sbjct: 289 LTELKLGANQIS-----NISPLAGLTALT 312
>gi|371942086|gb|AEX60855.1| truncated internaline [Listeria monocytogenes]
gi|371942128|gb|AEX60876.1| truncated internaline [Listeria monocytogenes]
Length = 491
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSDGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|298360230|gb|ADI77694.1| internalin A [Listeria monocytogenes]
gi|298360588|gb|ADI77873.1| internalin A [Listeria monocytogenes]
gi|298360606|gb|ADI77882.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|167861900|gb|ACA05649.1| InlA [Listeria monocytogenes]
gi|194326161|emb|CAQ77239.1| internalin A [Listeria monocytogenes]
gi|298360364|gb|ADI77761.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|148607488|gb|ABQ95520.1| InlA [Listeria monocytogenes]
Length = 797
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|294358397|gb|ADE73851.1| InlA [Listeria monocytogenes]
Length = 800
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 123/392 (31%), Positives = 181/392 (46%), Gaps = 60/392 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQIRD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDL 419
N KN+ I ++D G D+
Sbjct: 427 NVSIPNTVKNVTGALIAPDTISDGGSYAEPDI 458
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|150371858|dbj|BAF65718.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 130/439 (29%), Positives = 204/439 (46%), Gaps = 58/439 (13%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL+ L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLISLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LGSLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
N +++ G L I+D S T +++ NL T E+ + V++
Sbjct: 427 NVSIPNTVKNVTGALIAPAT--IRDGGSYTEPDIT--WNLPSYTNEVSYTFSQPVTIGKG 482
Query: 454 NSRITSAGLRHLKPLKNLR 472
+ + + LK + N++
Sbjct: 483 TTTFSGTVTQPLKAIFNVK 501
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 80/177 (45%), Gaps = 50/177 (28%)
Query: 316 GLRHLSG---LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSL 371
G++ + G L NL IN S ++D + L L+ L + ++ QI D T LA LT+L
Sbjct: 87 GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNL 144
Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
TGLT LF +ITD L+N NL LE+ ++D
Sbjct: 145 TGLT---LFNNQITDLDP--LKNLTNLNRLELSSNTISD--------------------- 178
Query: 432 NLTDKTLELISGLTGLVSLNVSNSRITSAG--LRHLKPLKNLRSLTLESCKVTANDI 486
IS L+GL+SL + S G + LKPL NL TLE +++N +
Sbjct: 179 ---------ISALSGLISL-----QQLSFGNQVTDLKPLANLT--TLERLDISSNKV 219
>gi|38154344|gb|AAR12159.1| internalin A [Listeria monocytogenes]
Length = 685
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 254
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 255 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 312
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 313 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 370
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 371 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 403
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 36 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 88
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 89 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 143
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 144 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 201
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 202 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 252
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 253 -NISPLAGLTALT 264
>gi|407424780|gb|EKF39143.1| hypothetical protein MOQ_000636 [Trypanosoma cruzi marinkellei]
Length = 936
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 121/483 (25%), Positives = 217/483 (44%), Gaps = 57/483 (11%)
Query: 31 CALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNF 90
CAL+DL L Y V ++ M S+ L + L G + GL L+ + L+ LD +
Sbjct: 373 CALRDLDLS-YTQVTEEGMHRDVSRLKKLSRLSLEGCRKIE-GLQWLRALTQLRELDLGY 430
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI--NLVKLDLERCTRIHGGL 148
++D L LR L L + IT+ +K G + +L +L+L + GL
Sbjct: 431 S-SVTDDSLTALRFCPELVRLDLQWCGRITS--LKCLVGALCDSLRELNLTETSVTDEGL 487
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
V LK LE ++++ C ++D ++ L LT L+ + + ++VT+ G+ L Q L
Sbjct: 488 VPLKDFAALEWISLEGCGAVSDVNV--LCNLTRLREVDVGRTRVTNGGVLSLSQCQALRA 545
Query: 209 LNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITD 266
+ + C +T A L AL L ++L+ C ++++G SL+ L L + ++D
Sbjct: 546 MRMRQCYRLTDASF--LGALQQLEEVDLSDCPVTNEGIAALCGARSLRKLQLQSCHAVSD 603
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG---L 323
+ L GL +L L+L + + G V L L L + V S L+H + L
Sbjct: 604 --VNFLGGLEHLMLLDLHHTTVDEAGSVGLAQCPQLTTLIMHSVLVHS--LQHWNAALFL 659
Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGL-------- 374
L+ ++LS T ++ +L L L++L+L + IT + + +G+
Sbjct: 660 PRLKRLDLSTTKVTSDALSFLRMCPILETLSLRGCKNITHLDFLIIQTSSGVGVCGIAPH 719
Query: 375 ------THLDLFGAR--------------------ITDSGAAYLRNFKNLRSLEICGGGL 408
T +D+ + I + AA + LR L + G+
Sbjct: 720 DAEPHDTLVDIIAGKEKNPDDGPSPIENMTINDGAIKSTAAAPVVGRHRLRELTLSDTGV 779
Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 468
T+ G++ ++ L L L+ N+T+ + ++ L+ L L++S + +T +GL +L P
Sbjct: 780 TNDGLRALQYCPGLERLRLAHCKNVTE--VAVLRWLSQLKELDLSATGVTGSGLANLSPS 837
Query: 469 KNL 471
NL
Sbjct: 838 GNL 840
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 124/505 (24%), Positives = 218/505 (43%), Gaps = 48/505 (9%)
Query: 8 QQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS 67
QQ+ + + TEV + A R+ L LG P K V LS+ +S S
Sbjct: 310 QQVSDVTPFLPHCTEVRVLALRNTHLTSEKLGLLP---QKCRHV------EQLSLCMSSS 360
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH-LRGLSNLTSLSFRRNNAITAQGMKA 126
L H C+ L+ LD ++ Q+++ G+ + L L+ LS I +G++
Sbjct: 361 VSCTRFLRHRSLCA-LRDLDLSY-TQVTEEGMHRDVSRLKKLSRLSLEGCRKI--EGLQW 416
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL--TNLKS 184
L L +LDL + L L+ +L L+++WC IT +K L G +L+
Sbjct: 417 LRALTQLRELDLGYSSVTDDSLTALRFCPELVRLDLQWCGRIT--SLKCLVGALCDSLRE 474
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L ++ + VTD G+ LK L ++LEGC + ++ L L L +++ R ++++ G
Sbjct: 475 LNLTETSVTDEGLVPLKDFAALEWISLEGCGAVSD-VNVLCNLTRLREVDVGRTRVTNGG 533
Query: 245 CEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
S+ +L+ + + +TD L L LE ++L C + +EG+ L G +L+
Sbjct: 534 VLSLSQCQALRAMRMRQCYRLTDASF--LGALQQLEEVDLSDCPVTNEGIAALCGARSLR 591
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD- 362
L+L S + L GL +L ++L T + + LA L +L + + +
Sbjct: 592 KLQLQSCH-AVSDVNFLGGLEHLMLLDLHHTTVDEAGSVGLAQCPQLTTLIMHSVLVHSL 650
Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
A L L LDL ++T ++LR L +L + G K+I L L
Sbjct: 651 QHWNAALFLPRLKRLDLSTTKVTSDALSFLRMCPILETLSL-------RGCKNITHLDFL 703
Query: 423 TLLNLS---------QNCNLTDKTLELIS--------GLTGLVSLNVSNSRITSAGLRHL 465
+ S + D +++I+ G + + ++ +++ I S +
Sbjct: 704 IIQTSSGVGVCGIAPHDAEPHDTLVDIIAGKEKNPDDGPSPIENMTINDGAIKSTAAAPV 763
Query: 466 KPLKNLRSLTLESCKVTANDIKRLQ 490
LR LTL VT + ++ LQ
Sbjct: 764 VGRHRLRELTLSDTGVTNDGLRALQ 788
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 82/354 (23%), Positives = 148/354 (41%), Gaps = 42/354 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L VD+ + VT+ G++ L C L+++ C +++D L L L + +
Sbjct: 517 TRLREVDVGRTRVTNGGVLSLSQCQALRAMRMRQCYRLTDASF--LGALQQLEEVDLS-D 573
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIH-----GGLVNLK---------------GLMK 156
+T +G+ A G +L KL L+ C + GGL +L GL +
Sbjct: 574 CPVTNEGIAALCGARSLRKLQLQSCHAVSDVNFLGGLEHLMLLDLHHTTVDEAGSVGLAQ 633
Query: 157 LESLNIKWCNCITDSDMKPLSG---LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L + + ++ + L LK L +S +KVT +++L+ L L+L G
Sbjct: 634 CPQLTTLIMHSVLVHSLQHWNAALFLPRLKRLDLSTTKVTSDALSFLRMCPILETLSLRG 693
Query: 214 CPVTAACLDSL-----SALGSLFYLNLNRCQLSDD------GCEKFSKIGSLKVLNLGFN 262
C LD L S +G + + + + D G EK G + N+ N
Sbjct: 694 C-KNITHLDFLIIQTSSGVG-VCGIAPHDAEPHDTLVDIIAGKEKNPDDGPSPIENMTIN 751
Query: 263 E--ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
+ I + G L L L G+ ++GL L L+ L L+ + + + L
Sbjct: 752 DGAIKSTAAAPVVGRHRLRELTLSDTGVTNDGLRALQYCPGLERLRLAHCK-NVTEVAVL 810
Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
L+ L+ ++LS TG++ L L+ +L + R+ + G + ++TG+
Sbjct: 811 RWLSQLKELDLSATGVTGSGLANLSPSGNLPVRCMREREWKEEGGVSGDNMTGV 864
>gi|371942110|gb|AEX60867.1| internaline [Listeria monocytogenes]
gi|371942112|gb|AEX60868.1| internaline [Listeria monocytogenes]
Length = 789
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|290994554|ref|XP_002679897.1| leucine rich repeat domain protein [Naegleria gruberi]
gi|284093515|gb|EFC47153.1| leucine rich repeat domain protein [Naegleria gruberi]
Length = 331
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 142/297 (47%), Gaps = 10/297 (3%)
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ----ISCS 190
K L +C+ I +N+ + + L+I++ N ITDS + L+S IS
Sbjct: 37 KFILYKCSLISKQFLNV--INERAKLSIEFKN-ITDSKFNAVRKSQFLESFTSLKFISVE 93
Query: 191 KVTDSGIAYLKGLQK-LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+V D L GL + LT L + G + +S L L ++ Q+ +G + S
Sbjct: 94 EVFDIKYLELVGLMRNLTKLCVGGNEIGLQGAKIVSEFKQLTSLYIDSSQIGTEGAKLIS 153
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
+ L L++ N + E + G+ +L LN+ S I EG+ +++ + NL L++
Sbjct: 154 GMTKLTELDISANYLCAEGAKSISGMDHLTFLNISSSNIDQEGIKSISEMKNLTKLDICG 213
Query: 310 TQVGSSGLRHLSGLTNLESINLSFTGI-SDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
+G+ G + +S + L + + S+G++ ++ L L +LN+ +I D G A+
Sbjct: 214 NNLGAEGAKSISQMKQLTYLKAYTNSLRSEGAIF-ISELDKLTTLNICYNEIGDEGAKAI 272
Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
+ + LT L + G RI GA + K LR L+I + + GVK++K + LT L
Sbjct: 273 SQMPNLTDLRIDGNRIGPEGAKSISEMKQLRLLDISFNRIGEEGVKYVKGMKHLTRL 329
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 114/239 (47%), Gaps = 4/239 (1%)
Query: 253 SLKVLNLGFNEITDECLVHLKGLT-NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
SLK +++ E+ D + L GL NL L + IG +G ++ L L + +Q
Sbjct: 86 SLKFISV--EEVFDIKYLELVGLMRNLTKLCVGGNEIGLQGAKIVSEFKQLTSLYIDSSQ 143
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
+G+ G + +SG+T L +++S + + ++G+ L LN+ + I G+ +++ +
Sbjct: 144 IGTEGAKLISGMTKLTELDISANYLCAEGAKSISGMDHLTFLNISSSNIDQEGIKSISEM 203
Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
LT LD+ G + GA + K L L+ L G I +L LT LN+ N
Sbjct: 204 KNLTKLDICGNNLGAEGAKSISQMKQLTYLKAYTNSLRSEGAIFISELDKLTTLNICYN- 262
Query: 432 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 490
+ D+ + IS + L L + +RI G + + +K LR L + ++ +K ++
Sbjct: 263 EIGDEGAKAISQMPNLTDLRIDGNRIGPEGAKSISEMKQLRLLDISFNRIGEEGVKYVK 321
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 110/216 (50%), Gaps = 1/216 (0%)
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
+G NEI + + L SL +DS IG EG ++G+ L L++S + + G +
Sbjct: 115 VGGNEIGLQGAKIVSEFKQLTSLYIDSSQIGTEGAKLISGMTKLTELDISANYLCAEGAK 174
Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
+SG+ +L +N+S + I ++ ++ + +L L++ + G +++ + LT+L
Sbjct: 175 SISGMDHLTFLNISSSNIDQEGIKSISEMKNLTKLDICGNNLGAEGAKSISQMKQLTYLK 234
Query: 379 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 438
+ + GA ++ L +L IC + D G K I + +LT L + N + +
Sbjct: 235 AYTNSLRSEGAIFISELDKLTTLNICYNEIGDEGAKAISQMPNLTDLRIDGN-RIGPEGA 293
Query: 439 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
+ IS + L L++S +RI G++++K +K+L L
Sbjct: 294 KSISEMKQLRLLDISFNRIGEEGVKYVKGMKHLTRL 329
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 110/238 (46%), Gaps = 27/238 (11%)
Query: 91 CIQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148
C+ ++ GL+ + +S L+ + ++ I +G K +G+ L +LD+
Sbjct: 114 CVGGNEIGLQGAKIVSEFKQLTSLYIDSSQIGTEGAKLISGMTKLTELDIS--------- 164
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
N + K +SG+ +L L IS S + GI + ++ LT
Sbjct: 165 ----------------ANYLCAEGAKSISGMDHLTFLNISSSNIDQEGIKSISEMKNLTK 208
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L++ G + A S+S + L YL L +G S++ L LN+ +NEI DE
Sbjct: 209 LDICGNNLGAEGAKSISQMKQLTYLKAYTNSLRSEGAIFISELDKLTTLNICYNEIGDEG 268
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
+ + NL L +D IG EG +++ + L+ L++S ++G G++++ G+ +L
Sbjct: 269 AKAISQMPNLTDLRIDGNRIGPEGAKSISEMKQLRLLDISFNRIGEEGVKYVKGMKHL 326
>gi|148607492|gb|ABQ95522.1| InlA [Listeria monocytogenes]
Length = 800
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|130774809|gb|ABO32417.1| InlA [Listeria monocytogenes]
Length = 800
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 122/391 (31%), Positives = 182/391 (46%), Gaps = 60/391 (15%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ NN
Sbjct: 100 LTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQ 153
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + L NL +L+L T + L GL L+ L+ N +TD +KPL+
Sbjct: 154 IT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLAN 205
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNL 235
LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L+L
Sbjct: 206 LTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSL 258
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
N QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 259 NGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISP 312
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK-------- 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 313 LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 370
Query: 344 --------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN- 394
LA L+++ L+ QI+D L L +LT +T L L T++ Y N
Sbjct: 371 NKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANV 428
Query: 395 -----FKNLRSLEICGGGLTDAGVKHIKDLS 420
KN+ I ++D G D++
Sbjct: 429 SIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|17546075|ref|NP_519477.1| GALA protein 4 [Ralstonia solanacearum GMI1000]
gi|17428371|emb|CAD15058.1| type III effector protein gala6 [Ralstonia solanacearum GMI1000]
Length = 620
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 121/430 (28%), Positives = 176/430 (40%), Gaps = 52/430 (12%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF-------RRNN 117
+GS ++ GL HL L+SL+ N I+I G L +L SLS R
Sbjct: 174 TGSAISAEGLAHLASMP-LKSLNLN-GIEIGVEGARTLAASKSLVSLSLIGCGIGDRAAQ 231
Query: 118 AITAQ----------------GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
A+ A G +A AG LV L+L + G L L SL+
Sbjct: 232 ALVASRSIQCLDLSVNRIGRDGAQALAG-APLVSLNLHNNEIGNEGARVLATSRTLTSLD 290
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+ N + ++ + +G T LK L ++ ++ G L + LT L+L + A
Sbjct: 291 VS-NNGVGNAGAEAFAGNTVLKQLSLAGGMISGDGAQALADNKSLTDLDLSNNRLGDAGA 349
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD--------------- 266
+L+ S L L ++ DG E ++ L+ LNL +N I
Sbjct: 350 QALADSESFVSLKLGGNEIGADGAEALARNVVLQSLNLSYNPIGFWGVNALGRAKLRKLD 409
Query: 267 --ECLVHLKGL------TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
C + G T+L SL L S IGD+G L L L LS + + G +
Sbjct: 410 LCACAIDSDGASALARNTSLASLYLGSNRIGDDGARALAKNSTLTLLNLSGNNIHAVGAQ 469
Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
L+ +L +++LS GI D LA L SLNL QI TG L L LD
Sbjct: 470 ALASNDSLITLDLSRNGIGDDGTAALACHPRLTSLNLSRNQIGSTGAQQLAKSATLAELD 529
Query: 379 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD--K 436
L RI GA L L +L + + +AG + + + SLT L+ +N D K
Sbjct: 530 LSENRIGPEGAEALARSTVLTTLNVSYNAIGEAGARALAESVSLTSLDARRNGIGEDGAK 589
Query: 437 TLELISGLTG 446
LE + +TG
Sbjct: 590 VLEANTRITG 599
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 146/337 (43%), Gaps = 4/337 (1%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
G+ L+S++L +++ + G L L SLD + + + G E G + L LS
Sbjct: 259 GAPLVSLNLHNNEIGNEGARVLATSRTLTSLDVSNN-GVGNAGAEAFAGNTVLKQLSLA- 316
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
I+ G +A A +L LDL G L SL + N I +
Sbjct: 317 GGMISGDGAQALADNKSLTDLDLSNNRLGDAGAQALADSESFVSLKLG-GNEIGADGAEA 375
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ L+SL +S + + G+ L G KL L+L C + + +L+ SL L L
Sbjct: 376 LARNVVLQSLNLSYNPIGFWGVNAL-GRAKLRKLDLCACAIDSDGASALARNTSLASLYL 434
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
++ DDG +K +L +LNL N I L +L +L+L GIGD+G
Sbjct: 435 GSNRIGDDGARALAKNSTLTLLNLSGNNIHAVGAQALASNDSLITLDLSRNGIGDDGTAA 494
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
L L L LS Q+GS+G + L+ L ++LS I LA + L +LN+
Sbjct: 495 LACHPRLTSLNLSRNQIGSTGAQQLAKSATLAELDLSENRIGPEGAEALARSTVLTTLNV 554
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
I + G AL LT LD I + GA L
Sbjct: 555 SYNAIGEAGARALAESVSLTSLDARRNGIGEDGAKVL 591
>gi|223698892|gb|ACN19168.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 341
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 342 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 7 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 60 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 223
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 224 -NISPLAGLTALT 235
>gi|219821387|gb|ACL37836.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 173/376 (46%), Gaps = 58/376 (15%)
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
+ LKD + L + N QI+D + L L+NLT L+ NN IT + L NL
Sbjct: 55 ITPLKDLTKLVDIVMNNN-QITD--ISPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNL 108
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+L+L T + L GL L+ L+ N +TD +KPL+ LT L+ L IS +KV+
Sbjct: 109 NRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLERLDISSNKVS 162
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSK 250
D + L KLT NLE T + ++ LG +L L+LN QL D G +
Sbjct: 163 DISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LAS 213
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+ +L L+L N+I++ L L GLT L L L + I + + L GL L LEL++
Sbjct: 214 LTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNEN 269
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK----------------LAGLSSL 350
Q+ + +S L NL + L F ISD SL K LA L+++
Sbjct: 270 QL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNI 327
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEIC 404
L+ QI+D L L +LT +T L L T+ Y N KN+ I
Sbjct: 328 NWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKTNVSIPNTVKNVTGALIA 385
Query: 405 GGGLTDAGVKHIKDLS 420
++D G D++
Sbjct: 386 PATISDGGSYAEPDIT 401
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 123/253 (48%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD----EGLVNLTG 298
DG E + +L +N GFN++TD + LK LT L + +++ I D L NLTG
Sbjct: 34 DGLEY---LNNLTQINFGFNQLTD--ITPLKDLTKLVDIVMNNNQITDISPLANLTNLTG 88
Query: 299 LC----------------NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
L NL LELS + S + LSGLTNL+ LSF G L+
Sbjct: 89 LTLFNNQITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVTDLK 143
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
LA L++L+ L++ + +++D ++ L LT L L +I+D L NL L
Sbjct: 144 PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELS 199
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 200 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 250
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 251 -NISPLAGLTALT 262
>gi|371942126|gb|AEX60875.1| internaline [Listeria monocytogenes]
Length = 790
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|223698835|gb|ACN19130.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 341
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 342 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 374
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 7 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 60 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 223
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 224 -NISPLAGLTALT 235
>gi|22347546|gb|AAM95918.1| internalin A precursor [Listeria monocytogenes]
gi|22347550|gb|AAM95920.1| internalin A precursor [Listeria monocytogenes]
Length = 744
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 254
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 255 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 312
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 313 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 370
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 371 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 403
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 36 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 88
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 89 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 143
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 144 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 201
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 202 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 252
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 253 -NISPLAGLTALT 264
>gi|371942096|gb|AEX60860.1| internaline [Listeria monocytogenes]
Length = 790
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|223698682|gb|ACN19028.1| internalin A [Listeria monocytogenes]
Length = 712
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 341
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 342 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 7 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 60 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 223
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 224 -NISPLAGLTALT 235
>gi|371942132|gb|AEX60878.1| internaline [Listeria monocytogenes]
Length = 790
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGDNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D + L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|371942116|gb|AEX60870.1| internaline [Listeria monocytogenes]
Length = 789
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|290997409|ref|XP_002681274.1| predicted protein [Naegleria gruberi]
gi|284094897|gb|EFC48530.1| predicted protein [Naegleria gruberi]
Length = 237
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 114/229 (49%), Gaps = 1/229 (0%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L +T L +L+I + + D+ + + +++LT L+LE + S+S L +L YLN+
Sbjct: 2 LGRMTQLTTLEIGNNLIDDNMVKLISEMKQLTCLDLEINQIFNEGAKSISELRNLTYLNI 61
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
++D+G E ++ +L L + IT + + L NL LN+ IGDEG
Sbjct: 62 GNNPINDEGIESICQLDNLTDLTVSSLRITSKSAKFISKLNNLTFLNIAYNNIGDEGAKF 121
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLN 354
++ + +LK L++S + G + +S L L + +S GI D R ++ + L L
Sbjct: 122 ISEIKSLKILDISLNGISPIGAKSISELDQLTVLYISQNFGIGDEGARMISEMKQLNELY 181
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
+ I + G +++ + LTHLD+ I G +R+ K+L L I
Sbjct: 182 IQDCFIGNAGAISISRMDKLTHLDISENEIQIEGETVIRDMKHLSYLSI 230
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 104/207 (50%)
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
+T L +L + + I D + ++ + L CL+L Q+ + G + +S L NL +N+
Sbjct: 5 MTQLTTLEIGNNLIDDNMVKLISEMKQLTCLDLEINQIFNEGAKSISELRNLTYLNIGNN 64
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
I+D + + L +L L + + +IT ++ L LT L++ I D GA ++
Sbjct: 65 PINDEGIESICQLDNLTDLTVSSLRITSKSAKFISKLNNLTFLNIAYNNIGDEGAKFISE 124
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
K+L+ L+I G++ G K I +L LT+L +SQN + D+ +IS + L L + +
Sbjct: 125 IKSLKILDISLNGISPIGAKSISELDQLTVLYISQNFGIGDEGARMISEMKQLNELYIQD 184
Query: 455 SRITSAGLRHLKPLKNLRSLTLESCKV 481
I +AG + + L L + ++
Sbjct: 185 CFIGNAGAISISRMDKLTHLDISENEI 211
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 113/253 (44%), Gaps = 36/253 (14%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
++ LT+L NN I +K + + L LDLE
Sbjct: 5 MTQLTTLEIG-NNLIDDNMVKLISEMKQLTCLDLE------------------------- 38
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N I + K +S L NL L I + + D GI + L LT L + +T+ +
Sbjct: 39 INQIFNEGAKSISELRNLTYLNIGNNPINDEGIESICQLDNLTDLTVSSLRITSKSAKFI 98
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL- 283
S L +L +LN+ + D+G + S+I SLK+L++ N I+ + K ++ L+ L +
Sbjct: 99 SKLNNLTFLNIAYNNIGDEGAKFISEIKSLKILDISLNGISP---IGAKSISELDQLTVL 155
Query: 284 ---DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS--- 337
+ GIGDEG ++ + L L + D +G++G +S + L +++S I
Sbjct: 156 YISQNFGIGDEGARMISEMKQLNELYIQDCFIGNAGAISISRMDKLTHLDISENEIQIEG 215
Query: 338 DGSLRKLAGLSSL 350
+ +R + LS L
Sbjct: 216 ETVIRDMKHLSYL 228
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 78/157 (49%), Gaps = 1/157 (0%)
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
L +T L ++ + I D ++ ++ + L L+L+ QI + G +++ L LT+L++
Sbjct: 2 LGRMTQLTTLEIGNNLIDDNMVKLISEMKQLTCLDLEINQIFNEGAKSISELRNLTYLNI 61
Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
I D G + NL L + +T K I L++LT LN++ N N+ D+ +
Sbjct: 62 GNNPINDEGIESICQLDNLTDLTVSSLRITSKSAKFISKLNNLTFLNIAYN-NIGDEGAK 120
Query: 440 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
IS + L L++S + I+ G + + L L L +
Sbjct: 121 FISEIKSLKILDISLNGISPIGAKSISELDQLTVLYI 157
>gi|223698655|gb|ACN19010.1| internalin A [Listeria monocytogenes]
gi|223698913|gb|ACN19182.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 341
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 342 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 7 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 60 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 223
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 224 -NISPLAGLTALT 235
>gi|334116578|ref|ZP_08490670.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
FGP-2]
gi|333461398|gb|EGK90003.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
FGP-2]
Length = 576
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 110/195 (56%), Gaps = 14/195 (7%)
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
+DD E + S+ L L ++ ITD + L+ LTNL +LN ++ I D + +L L
Sbjct: 42 TDDAQEAEQILSSMTELALSYDHITD--ISFLRWLTNLTTLNFENNKITD--ISSLGSLT 97
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
NL L LS Q+ + + L LTNL +++LS+ I D S L L++L LNL+ I
Sbjct: 98 NLTRLNLSYNQI--TDISFLGSLTNLTTLDLSYNRIIDIS--SLGSLTNLTRLNLNINTI 153
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
TD +++L SLT LT LDL +ITD + L + NL L++ +TD + ++ L+
Sbjct: 154 TD--ISSLGSLTNLTRLDLLSNQITDLSS--LGSLTNLTRLDLSSNPITD--INALRKLT 207
Query: 421 SLTLLNLSQNCNLTD 435
+LT+L++ N +T+
Sbjct: 208 NLTILDILSNTRITN 222
>gi|371942100|gb|AEX60862.1| internaline [Listeria monocytogenes]
Length = 789
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|223698622|gb|ACN18988.1| internalin A [Listeria monocytogenes]
gi|223698634|gb|ACN18996.1| internalin A [Listeria monocytogenes]
gi|223698694|gb|ACN19036.1| internalin A [Listeria monocytogenes]
gi|223698712|gb|ACN19048.1| internalin A [Listeria monocytogenes]
gi|223698745|gb|ACN19070.1| internalin A [Listeria monocytogenes]
gi|223698751|gb|ACN19074.1| internalin A [Listeria monocytogenes]
gi|223698766|gb|ACN19084.1| internalin A [Listeria monocytogenes]
gi|223698769|gb|ACN19086.1| internalin A [Listeria monocytogenes]
gi|223698772|gb|ACN19088.1| internalin A [Listeria monocytogenes]
gi|223698775|gb|ACN19090.1| internalin A [Listeria monocytogenes]
gi|223698778|gb|ACN19092.1| internalin A [Listeria monocytogenes]
gi|223698787|gb|ACN19098.1| internalin A [Listeria monocytogenes]
gi|223698793|gb|ACN19102.1| internalin A [Listeria monocytogenes]
gi|223698799|gb|ACN19106.1| internalin A [Listeria monocytogenes]
gi|223698802|gb|ACN19108.1| internalin A [Listeria monocytogenes]
gi|223698805|gb|ACN19110.1| internalin A [Listeria monocytogenes]
gi|223698817|gb|ACN19118.1| internalin A [Listeria monocytogenes]
gi|223698859|gb|ACN19146.1| internalin A [Listeria monocytogenes]
gi|223698865|gb|ACN19150.1| internalin A [Listeria monocytogenes]
gi|223698979|gb|ACN19226.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 341
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 342 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 7 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 60 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 223
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 224 -NISPLAGLTALT 235
>gi|223698619|gb|ACN18986.1| truncated internalin A [Listeria monocytogenes]
gi|223698691|gb|ACN19034.1| truncated internalin A [Listeria monocytogenes]
gi|223698706|gb|ACN19044.1| truncated internalin A [Listeria monocytogenes]
gi|223698715|gb|ACN19050.1| truncated internalin A [Listeria monocytogenes]
gi|223698781|gb|ACN19094.1| truncated internalin A [Listeria monocytogenes]
gi|223698784|gb|ACN19096.1| truncated internalin A [Listeria monocytogenes]
gi|223698814|gb|ACN19116.1| truncated internalin A [Listeria monocytogenes]
gi|223698838|gb|ACN19132.1| truncated internalin A [Listeria monocytogenes]
gi|223698844|gb|ACN19136.1| truncated internalin A [Listeria monocytogenes]
gi|223698850|gb|ACN19140.1| truncated internalin A [Listeria monocytogenes]
gi|223698856|gb|ACN19144.1| truncated internalin A [Listeria monocytogenes]
gi|223698880|gb|ACN19160.1| truncated internalin A [Listeria monocytogenes]
gi|223698958|gb|ACN19212.1| truncated internalin A [Listeria monocytogenes]
gi|223698967|gb|ACN19218.1| truncated internalin A [Listeria monocytogenes]
gi|223698970|gb|ACN19220.1| truncated internalin A [Listeria monocytogenes]
gi|223698973|gb|ACN19222.1| truncated internalin A [Listeria monocytogenes]
gi|223698982|gb|ACN19228.1| truncated internalin A [Listeria monocytogenes]
Length = 614
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 341
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 342 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 7 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 60 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 223
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 224 -NISPLAGLTALT 235
>gi|256395747|ref|YP_003117311.1| hypothetical protein Caci_6624 [Catenulispora acidiphila DSM 44928]
gi|256361973|gb|ACU75470.1| hypothetical protein Caci_6624 [Catenulispora acidiphila DSM 44928]
Length = 175
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 74/124 (59%), Gaps = 2/124 (1%)
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
+F +G+ +V + +T E LV L G+ L +LNL++ IGD+ L + L L+ L+
Sbjct: 7 RFFDVGAERVY--ADDRVTREDLVALAGMPRLRALNLNTAAIGDDDLEAVGRLVGLQDLD 64
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
+S T + +G+RHLSGLT++ + + T ++D LR LA + +L+++NL I+D GL
Sbjct: 65 VSTTDITDAGVRHLSGLTDMRHLRIKETRVTDAGLRLLAPMGALETVNLRRLDISDEGLR 124
Query: 367 ALTS 370
L
Sbjct: 125 GLAE 128
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 82/151 (54%), Gaps = 7/151 (4%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
+R TR LV L G+ +L +LN+ I D D++ + L L+ L +S + +TD+G+
Sbjct: 20 DRVTR--EDLVALAGMPRLRALNLNTA-AIGDDDLEAVGRLVGLQDLDVSTTDITDAGVR 76
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
+L GL + L ++ VT A L L+ +G+L +NL R +SD+G ++ + L+
Sbjct: 77 HLSGLTDMRHLRIKETRVTDAGLRLLAPMGALETVNLRRLDISDEGLRGLAE--RHRCLD 134
Query: 259 -LGFNEITDECLVHLKGLTNLESLNLDSCGI 288
+ ++ DEC + GL ++ L L +C I
Sbjct: 135 TIVISDEVDECRFTVAGLAEVQRL-LPACEI 164
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 53/98 (54%)
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
E LV L G+ L+ L L+ +G L + L L+ +++S T I+D +R L+GL+ +
Sbjct: 25 EDLVALAGMPRLRALNLNTAAIGDDDLEAVGRLVGLQDLDVSTTDITDAGVRHLSGLTDM 84
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
+ L + ++TD GL L + L ++L I+D G
Sbjct: 85 RHLRIKETRVTDAGLRLLAPMGALETVNLRRLDISDEG 122
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 6/132 (4%)
Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
+D +V L L+G+ L ++NL+ I D L + L L+ L++ ITD G+
Sbjct: 18 ADDRVTREDLVALAGMPRLRALNLNTAAIGDDDLEAVGRLVGLQDLDVSTTDITDAGVRH 77
Query: 368 LTSLTGLTHLDLFGARITDSGAAYLRNFK-----NLRSLEICGGGLTDAGVKHIKDLSSL 422
L+ LT + HL + R+TD+G L NLR L+I GL +H + L ++
Sbjct: 78 LSGLTDMRHLRIKETRVTDAGLRLLAPMGALETVNLRRLDISDEGLRGLAERH-RCLDTI 136
Query: 423 TLLNLSQNCNLT 434
+ + C T
Sbjct: 137 VISDEVDECRFT 148
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
VT L +L+ + L LNLN + DD E ++ L+ L++ +ITD + HL GL
Sbjct: 22 VTREDLVALAGMPRLRALNLNTAAIGDDDLEAVGRLVGLQDLDVSTTDITDAGVRHLSGL 81
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
T +++ L + +T+V +GLR L+ + LE++NL
Sbjct: 82 T------------------------DMRHLRIKETRVTDAGLRLLAPMGALETVNLRRLD 117
Query: 336 ISDGSLRKLA 345
ISD LR LA
Sbjct: 118 ISDEGLRGLA 127
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 49/149 (32%)
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
LAG+ L++LNL+ I D L A+ L GL LD+ TD
Sbjct: 30 LAGMPRLRALNLNTAAIGDDDLEAVGRLVGLQDLDV---STTD----------------- 69
Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
+TDAGV+H+ SGLT + L + +R+T AGLR
Sbjct: 70 ----ITDAGVRHL-------------------------SGLTDMRHLRIKETRVTDAGLR 100
Query: 464 HLKPLKNLRSLTLESCKVTANDIKRLQSR 492
L P+ L ++ L ++ ++ L R
Sbjct: 101 LLAPMGALETVNLRRLDISDEGLRGLAER 129
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%)
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
+VT + L G+ +L LNL + L+++ L L L+++ ++D G S
Sbjct: 21 RVTREDLVALAGMPRLRALNLNTAAIGDDDLEAVGRLVGLQDLDVSTTDITDAGVRHLSG 80
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+ ++ L + +TD L L + LE++NL I DEGL L
Sbjct: 81 LTDMRHLRIKETRVTDAGLRLLAPMGALETVNLRRLDISDEGLRGLA 127
>gi|148607482|gb|ABQ95519.1| InlA [Listeria monocytogenes]
Length = 800
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|371942084|gb|AEX60854.1| internaline [Listeria monocytogenes]
Length = 790
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D + L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|223698901|gb|ACN19174.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 341
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 342 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 374
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 7 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 60 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 223
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 224 -NISPLAGLTALT 235
>gi|112961790|gb|ABI28546.1| internalin A [Listeria monocytogenes]
Length = 693
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 122/386 (31%), Positives = 178/386 (46%), Gaps = 60/386 (15%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S + +TD + LKD + L + N QI+D + L L+NLT L+ NN IT
Sbjct: 1 FSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQIT--D 52
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L NL +L+L T + L GL L+ L+ N +TD +KPL+ LT L+
Sbjct: 53 IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLANLTTLE 106
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQL 240
L IS +KV+D + L KLT NLE T + ++ LG +L L+LN QL
Sbjct: 107 RLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQL 159
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D G + + +L L+L N+I++ L L GLT L L L + I + + L GL
Sbjct: 160 KDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLT 213
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------------- 343
L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 214 ALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD 271
Query: 344 ---LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN------ 394
LA L+++ L+ QI+D L L +LT +T L L T+ Y N
Sbjct: 272 VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNT 329
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLS 420
KN+ I ++D G D++
Sbjct: 330 VKNVTGALIAPATISDGGSYAEPDIT 355
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 113/234 (48%), Gaps = 41/234 (17%)
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
N++TD + LK LT L + +++ I D + L L NL L L + Q+ + + L
Sbjct: 4 NQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQI--TDIDPLK 57
Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
LTNL + LS ISD + L+GL+SL+ L+ Q+TD L L +LT L LD+
Sbjct: 58 NLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD--LKPLANLTTLERLDISS 112
Query: 382 ARITD-SGAAYLRNFK-------------------NLRSLEICGGGLTDAGVKHIKDLSS 421
+++D S A L N + NL L + G L D G + L++
Sbjct: 113 NKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTN 170
Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
LT L+L+ N L +SGLT L L + ++I+ ++ PL L +LT
Sbjct: 171 LTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAGLTALT 216
>gi|430743420|ref|YP_007202549.1| hypothetical protein Sinac_2547 [Singulisphaera acidiphila DSM
18658]
gi|430015140|gb|AGA26854.1| hypothetical protein Sinac_2547 [Singulisphaera acidiphila DSM
18658]
Length = 356
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 118/229 (51%), Gaps = 5/229 (2%)
Query: 169 TDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSA 226
T++ M + L+ L+ L + SK+T++G+ +L+ L +L +++L P VT L L+
Sbjct: 121 TNATMSHVGRLSQLEELDATGGSKLTNAGLVHLQSLTRLRMVDLSLLPGVTGKGLIHLAE 180
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDS 285
L SL LNL+ D + G N ITDE L +LKGLT L L L +
Sbjct: 181 LTSLERLNLSSPVADADLVNLSRLTNLRLLRLNGGGNGITDEGLANLKGLTELRELILRN 240
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
+ GL L G+ + L+L ++ + + L L +T L+S+ + + + D L+ +
Sbjct: 241 SQVTGTGLTALQGMIAMADLKLINSHLET--LEPLQRMTGLKSLWIHRSPLDDRGLKHVE 298
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
L SL+ L+L+ +ITD GL +L L GL +D G +T G+A +
Sbjct: 299 NLKSLQYLSLEDTRITDDGLKSLLDLRGLREVDARGTGVTIMGSATFQQ 347
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 111/244 (45%), Gaps = 33/244 (13%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSL 254
G Y +++ +L G T A + + L L L+ +L++ G + L
Sbjct: 104 GPDYFGSVKQASL----GSQATNATMSHVGRLSQLEELDATGGSKLTNAGLVHLQSLTRL 159
Query: 255 KVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-------------------------GI 288
++++L +T + L+HL LT+LE LNL S GI
Sbjct: 160 RMVDLSLLPGVTGKGLIHLAELTSLERLNLSSPVADADLVNLSRLTNLRLLRLNGGGNGI 219
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
DEGL NL GL L+ L L ++QV +GL L G+ + + L + + +L L ++
Sbjct: 220 TDEGLANLKGLTELRELILRNSQVTGTGLTALQGMIAMADLKLINSHLE--TLEPLQRMT 277
Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
LKSL + + D GL + +L L +L L RITD G L + + LR ++ G G+
Sbjct: 278 GLKSLWIHRSPLDDRGLKHVENLKSLQYLSLEDTRITDDGLKSLLDLRGLREVDARGTGV 337
Query: 409 TDAG 412
T G
Sbjct: 338 TIMG 341
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 129/245 (52%), Gaps = 37/245 (15%)
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG---IGDEGLVNLTGLCNLKCLEL 307
GS+K +LG ++ T+ + H+ L+ LE LD+ G + + GLV+L L L+ ++L
Sbjct: 108 FGSVKQASLG-SQATNATMSHVGRLSQLE--ELDATGGSKLTNAGLVHLQSLTRLRMVDL 164
Query: 308 SD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA--RQITDTG 364
S V GL HL+ LT+LE +NLS + ++D L L+ L++L+ L L+ ITD G
Sbjct: 165 SLLPGVTGKGLIHLAELTSLERLNLS-SPVADADLVNLSRLTNLRLLRLNGGGNGITDEG 223
Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424
LA L LT L L L +++T +G L+ + L++
Sbjct: 224 LANLKGLTELRELILRNSQVTGTGLTALQGMIAMADLKLI-------------------- 263
Query: 425 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 484
N +L +TLE + +TGL SL + S + GL+H++ LK+L+ L+LE ++T +
Sbjct: 264 -----NSHL--ETLEPLQRMTGLKSLWIHRSPLDDRGLKHVENLKSLQYLSLEDTRITDD 316
Query: 485 DIKRL 489
+K L
Sbjct: 317 GLKSL 321
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 104/223 (46%), Gaps = 27/223 (12%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
GS +T++GL+HL+ + L+ +D + ++ GL HL L++L L+
Sbjct: 142 GSKLTNAGLVHLQSLTRLRMVDLSLLPGVTGKGLIHLAELTSLERLNL--------SSPV 193
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
A A L+NL +L R R++GG N ITD + L GLT L+ L
Sbjct: 194 ADADLVNLSRLTNLRLLRLNGG-----------------GNGITDEGLANLKGLTELREL 236
Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
+ S+VT +G+ L+G+ + L L + L+ L + L L ++R L D G
Sbjct: 237 ILRNSQVTGTGLTALQGMIAMADLKLINSHL--ETLEPLQRMTGLKSLWIHRSPLDDRGL 294
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
+ + SL+ L+L ITD+ L L L L ++ G+
Sbjct: 295 KHVENLKSLQYLSLEDTRITDDGLKSLLDLRGLREVDARGTGV 337
>gi|223698868|gb|ACN19152.1| internalin A [Listeria monocytogenes]
gi|223698898|gb|ACN19172.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 341
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 342 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 374
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 7 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 60 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 223
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 224 -NISPLAGLTALT 235
>gi|112961787|gb|ABI28544.1| internalin A [Listeria monocytogenes]
Length = 696
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 122/386 (31%), Positives = 178/386 (46%), Gaps = 60/386 (15%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S + +TD + LKD + L + N QI+D + L L+NLT L+ NN IT
Sbjct: 1 FSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQIT--D 52
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L NL +L+L T + L GL L+ L+ N +TD +KPL+ LT L+
Sbjct: 53 IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLE 106
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQL 240
L IS +KV+D + L KLT NLE T + ++ LG +L L+LN QL
Sbjct: 107 RLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQL 159
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D G + + +L L+L N+I++ L L GLT L L L + I + + L GL
Sbjct: 160 KDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLT 213
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------------- 343
L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 214 ALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD 271
Query: 344 ---LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN------ 394
LA L+++ L+ QI+D L L +LT +T L L T+ Y N
Sbjct: 272 VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNT 329
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLS 420
KN+ I ++D G D++
Sbjct: 330 VKNVTGALIAPATISDGGSYAEPDIT 355
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 108/214 (50%), Gaps = 23/214 (10%)
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
N+I D + L LTNL L L + I D + L L NL LELS + S + LS
Sbjct: 26 NQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALS 79
Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 80 GLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATN 134
Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
+I+D L NL L + G L D G + L++LT L+L+ N L +
Sbjct: 135 NQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPL 187
Query: 442 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
SGLT L L + ++I+ ++ PL L +LT
Sbjct: 188 SGLTKLTELKLGANQIS-----NISPLAGLTALT 216
>gi|38154342|gb|AAR12158.1| internalin A [Listeria monocytogenes]
Length = 728
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 254
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 255 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 312
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 313 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 370
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 371 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 403
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 36 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 88
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 89 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 143
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 144 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 201
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 202 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 252
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 253 -NISPLAGLTALT 264
>gi|22347556|gb|AAM95923.1| internalin A precursor [Listeria monocytogenes]
Length = 744
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 200
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 201 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 254
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 255 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 312
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 313 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 370
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 371 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 403
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 36 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 88
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 89 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 143
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 144 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 201
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 202 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 252
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 253 -NISPLAGLTALT 264
>gi|223698976|gb|ACN19224.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 341
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 342 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 7 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 60 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 223
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 224 -NISPLAGLTALT 235
>gi|434399050|ref|YP_007133054.1| leucine-rich repeat-containing protein [Stanieria cyanosphaera PCC
7437]
gi|428270147|gb|AFZ36088.1| leucine-rich repeat-containing protein [Stanieria cyanosphaera PCC
7437]
Length = 842
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 140/462 (30%), Positives = 186/462 (40%), Gaps = 101/462 (21%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I D L+ ++ L+NLTSL+ N + + F N + L L+
Sbjct: 108 EIDDDNLDRIKSLTNLTSLNLSTPNVLIYG--RTFHYTHNHI-----------TDLKPLR 154
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD------------------ 194
L KLE L + N I D+ PL LTNL+ L + S + D
Sbjct: 155 SLAKLEKLELS-ANPI--KDISPLQSLTNLRELNLKHSPIEDLTPLKSLINLTSLSVRVY 211
Query: 195 ------------------------SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ I++L+ L KLT L+L V LSAL SL
Sbjct: 212 DAKNLIPLKYLTNLTQLSVRASQLNNISFLQSLTKLTHLSLRSIKVQVNRASDLSALQSL 271
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNL---------------GFNEITDECLVH---- 271
NL L+ G S + SL L F ++T CL+
Sbjct: 272 --TNLTHLTLNGYGTIDLSVLQSLTNLTQLTLKGFSINNISLLGAFPKLTSLCLIENEIN 329
Query: 272 ----LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
L LT L +L L+ I D L+ L L NL L L+ Q+ S L L LTNL
Sbjct: 330 DFSSLGALTKLTNLILNKNQISD--LIPLQSLTNLTSLALNKNQI--SDLTPLQSLTNLT 385
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD- 386
S+ L+ ISD L L L++L SL L+ QI+D L L SLT LT L L +I+D
Sbjct: 386 SLALNKNQISD--LTPLQSLTNLTSLTLNKNQISD--LTPLQSLTNLTSLCLVKNQISDL 441
Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT-LLNLSQNCNLTDKTLELISGLT 445
+ L N NL +TD L SLT L NL+ N N LIS LT
Sbjct: 442 TPLQSLTNLTNLTYTNSHSTQITD-----FTPLQSLTKLTNLTLNKNEISDFTPLIS-LT 495
Query: 446 GLVSLNVSNSRI-TSAGLRHLKPLK-NLRSLTLESCKVTAND 485
L L + S T + L L NLRSL L + ++ D
Sbjct: 496 NLTFLYLRRSWWSTIERINQLNSLPNNLRSLALSTQRICRTD 537
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 133/312 (42%), Gaps = 76/312 (24%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
S L L+ +NL L N I L+ L L+ LT F NN I+ G AF L
Sbjct: 263 SDLSALQSLTNLTHLTLNGYGTIDLSVLQSLTNLTQLTLKGFSINN-ISLLG--AFPKLT 319
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
+L ++ E +L L KL +L + N SD+ PL LTNL SL ++ ++
Sbjct: 320 SLCLIENEI-----NDFSSLGALTKLTNLIL---NKNQISDLIPLQSLTNLTSLALNKNQ 371
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
++D L L +L +L L LN+ Q+SD
Sbjct: 372 ISD--------------------------LTPLQSLTNLTSLALNKNQISD--------- 396
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD----EGLVNLTGLCNLKCLEL 307
L L+ LTNL SL L+ I D + L NLT LC +K ++
Sbjct: 397 -----------------LTPLQSLTNLTSLTLNKNQISDLTPLQSLTNLTSLCLVKN-QI 438
Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
SD + L+ L+ LTNL N T I+D + L L+ L +L L+ +I+D
Sbjct: 439 SDL----TPLQSLTNLTNLTYTNSHSTQITDFT--PLQSLTKLTNLTLNKNEISD--FTP 490
Query: 368 LTSLTGLTHLDL 379
L SLT LT L L
Sbjct: 491 LISLTNLTFLYL 502
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 114/363 (31%), Positives = 165/363 (45%), Gaps = 53/363 (14%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D + L L NL+ L S S + + ++ L+ L KLT L+L C + LD + +L +L
Sbjct: 66 DFRLLQCLPNLQQLNGSGS-WSGNDLSVLQSLTKLTTLSLLDCEIDDDNLDRIKSLTNLT 124
Query: 232 YLNLNRCQLSDDG------------CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
LNL+ + G + + L+ L L N I D + L+ LTNL
Sbjct: 125 SLNLSTPNVLIYGRTFHYTHNHITDLKPLRSLAKLEKLELSANPIKD--ISPLQSLTNLR 182
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD- 338
LNL I D L L L NL LS + L L LTNL +++ + +++
Sbjct: 183 ELNLKHSPIED--LTPLKSLINLTS--LSVRVYDAKNLIPLKYLTNLTQLSVRASQLNNI 238
Query: 339 ---GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
SL KL L SL+S+ + + +D L+AL SLT LTHL L G D + L++
Sbjct: 239 SFLQSLTKLTHL-SLRSIKVQVNRASD--LSALQSLTNLTHLTLNGYGTID--LSVLQSL 293
Query: 396 KNLRSLEICGGGLTDAGV--------------KHIKDLSSL----TLLNLSQNCNLTDKT 437
NL L + G + + + I D SSL L NL N N
Sbjct: 294 TNLTQLTLKGFSINNISLLGAFPKLTSLCLIENEINDFSSLGALTKLTNLILNKNQISDL 353
Query: 438 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 497
+ L S LT L SL ++ ++I + L L+ L NL SL L +++ D+ LQS L NL
Sbjct: 354 IPLQS-LTNLTSLALNKNQI--SDLTPLQSLTNLTSLALNKNQIS--DLTPLQS--LTNL 406
Query: 498 VSF 500
S
Sbjct: 407 TSL 409
>gi|112961778|gb|ABI28538.1| internalin A [Listeria monocytogenes]
Length = 696
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 122/386 (31%), Positives = 178/386 (46%), Gaps = 60/386 (15%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S + +TD + LKD + L + N QI+D + L L+NLT L+ NN IT
Sbjct: 1 FSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQIT--D 52
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L NL +L+L T + L GL L+ L+ N +TD +KPL+ LT L+
Sbjct: 53 IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLE 106
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQL 240
L IS +KV+D + L KLT NLE T + ++ LG +L L+LN QL
Sbjct: 107 RLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQL 159
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D G + + +L L+L N+I++ L L GLT L L L + I + + L GL
Sbjct: 160 KDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLT 213
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------------- 343
L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 214 ALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD 271
Query: 344 ---LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN------ 394
LA L+++ L+ QI+D L L +LT +T L L T+ Y N
Sbjct: 272 VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNT 329
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLS 420
KN+ I ++D G D++
Sbjct: 330 VKNVTGALIAPATISDGGSYAEPDIT 355
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 108/214 (50%), Gaps = 23/214 (10%)
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
N+I D + L LTNL L L + I D + L L NL LELS + S + LS
Sbjct: 26 NQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALS 79
Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 80 GLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATN 134
Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
+I+D L NL L + G L D G + L++LT L+L+ N L +
Sbjct: 135 NQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPL 187
Query: 442 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
SGLT L L + ++I+ ++ PL L +LT
Sbjct: 188 SGLTKLTELKLGANQIS-----NISPLAGLTALT 216
>gi|223698643|gb|ACN19002.1| internalin A [Listeria monocytogenes]
gi|223698646|gb|ACN19004.1| internalin A [Listeria monocytogenes]
gi|223698670|gb|ACN19020.1| internalin A [Listeria monocytogenes]
gi|223698673|gb|ACN19022.1| internalin A [Listeria monocytogenes]
gi|223698718|gb|ACN19052.1| internalin A [Listeria monocytogenes]
gi|223698754|gb|ACN19076.1| internalin A [Listeria monocytogenes]
gi|223698757|gb|ACN19078.1| internalin A [Listeria monocytogenes]
gi|223698796|gb|ACN19104.1| internalin A [Listeria monocytogenes]
gi|223698826|gb|ACN19124.1| internalin A [Listeria monocytogenes]
gi|223698829|gb|ACN19126.1| internalin A [Listeria monocytogenes]
gi|223698832|gb|ACN19128.1| internalin A [Listeria monocytogenes]
gi|223698862|gb|ACN19148.1| internalin A [Listeria monocytogenes]
gi|223698895|gb|ACN19170.1| internalin A [Listeria monocytogenes]
gi|223698925|gb|ACN19190.1| internalin A [Listeria monocytogenes]
gi|223698928|gb|ACN19192.1| internalin A [Listeria monocytogenes]
gi|223698931|gb|ACN19194.1| internalin A [Listeria monocytogenes]
gi|223698934|gb|ACN19196.1| internalin A [Listeria monocytogenes]
gi|223698937|gb|ACN19198.1| internalin A [Listeria monocytogenes]
gi|223698940|gb|ACN19200.1| internalin A [Listeria monocytogenes]
gi|223698943|gb|ACN19202.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 341
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 342 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 7 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 60 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 223
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 224 -NISPLAGLTALT 235
>gi|112961781|gb|ABI28540.1| internalin A [Listeria monocytogenes]
Length = 696
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 122/386 (31%), Positives = 178/386 (46%), Gaps = 60/386 (15%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S + +TD + LKD + L + N QI+D + L L+NLT L+ NN IT
Sbjct: 1 FSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQIT--D 52
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L NL +L+L T + L GL L+ L+ N +TD +KPL+ LT L+
Sbjct: 53 IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLE 106
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQL 240
L IS +KV+D + L KLT NLE T + ++ LG +L L+LN QL
Sbjct: 107 RLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQL 159
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D G + + +L L+L N+I++ L L GLT L L L + I + + L GL
Sbjct: 160 KDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLT 213
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------------- 343
L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 214 ALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD 271
Query: 344 ---LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN------ 394
LA L+++ L+ QI+D L L +LT +T L L T+ Y N
Sbjct: 272 VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNT 329
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLS 420
KN+ I ++D G D++
Sbjct: 330 VKNVTGALIAPATISDGGSYAEPDIT 355
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 108/214 (50%), Gaps = 23/214 (10%)
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
N+I D + L LTNL L L + I D + L L NL LELS + S + LS
Sbjct: 26 NQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALS 79
Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
GLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 80 GLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATN 134
Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
+I+D L NL L + G L D G + L++LT L+L+ N L +
Sbjct: 135 NQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPL 187
Query: 442 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
SGLT L L + ++I+ ++ PL L +LT
Sbjct: 188 SGLTKLTELKLGANQIS-----NISPLAGLTALT 216
>gi|156377140|ref|XP_001630715.1| predicted protein [Nematostella vectensis]
gi|156217741|gb|EDO38652.1| predicted protein [Nematostella vectensis]
Length = 398
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 158/308 (51%), Gaps = 33/308 (10%)
Query: 81 SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLD 137
S ++SL+ C ++D + H ++ L LT L IT + A + NL LD
Sbjct: 94 SCIESLNLKGCYNVTDTSIGHAFVKYLPTLTVLDLSLCKQITDSSLGKIADFLKNLEFLD 153
Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT---------NLKSLQ 186
L C I G L+ GL+KL+ LN++ C I+D+ + LSGL+ NL +L
Sbjct: 154 LAGCCNITNTGLLLCSWGLVKLKHLNLRSCRHISDAGILHLSGLSNNINAHGNKNLTTLC 213
Query: 187 IS-CSKVTDSGIAYL-KGLQKLTLLNLEG-CPVTAACLDSLSALGSLFYLNLNRCQ-LSD 242
+ C K+TD+ + ++ KGL L LNL C ++ A L L+ L SL LNL C+ +++
Sbjct: 214 LQDCQKITDNALRHISKGLINLECLNLSFCCGISGAGLAHLATLRSLRELNLRSCEGVNN 273
Query: 243 DGCEKFSKIG-SLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT-- 297
+G + G +L L++ F ++I D L H+ GL +L++L L+S I DEGL ++
Sbjct: 274 EGIAHLAVGGLNLVCLDVSFCDKIGDVALNHISSGLNHLQNLGLNSSHITDEGLCKISRH 333
Query: 298 ----GLCNL-KCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLK 351
+ N+ +C +++D + S S L + +I+L T ++ L KL L L+
Sbjct: 334 LRELRVLNIGQCTQITDQSIASIA----SNLICITNIDLYGCTKVTKCGLEKLMHLPKLR 389
Query: 352 SLNLDARQ 359
LNL Q
Sbjct: 390 VLNLGLWQ 397
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 153/298 (51%), Gaps = 27/298 (9%)
Query: 157 LESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIAYLKG-LQKLTLLNLE 212
+ESLN+K C +TD+ + + L L L +S C ++TDS + + L+ L L+L
Sbjct: 96 IESLNLKGCYNVTDTSIGHAFVKYLPTLTVLDLSLCKQITDSSLGKIADFLKNLEFLDLA 155
Query: 213 GC--PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKI-------GSLKVLNLGFN 262
GC L L L +LNL C+ +SD G S + G+ + L
Sbjct: 156 GCCNITNTGLLLCSWGLVKLKHLNLRSCRHISDAGILHLSGLSNNINAHGNKNLTTLCLQ 215
Query: 263 E---ITDECLVHL-KGLTNLESLNLD-SCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSG 316
+ ITD L H+ KGL NLE LNL CGI GL +L L +L+ L L + V + G
Sbjct: 216 DCQKITDNALRHISKGLINLECLNLSFCCGISGAGLAHLATLRSLRELNLRSCEGVNNEG 275
Query: 317 LRHLS-GLTNLESINLSFT-GISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLT 372
+ HL+ G NL +++SF I D +L ++ GL+ L++L L++ ITD GL ++ L
Sbjct: 276 IAHLAVGGLNLVCLDVSFCDKIGDVALNHISSGLNHLQNLGLNSSHITDEGLCKISRHLR 335
Query: 373 GLTHLDLFG-ARITD-SGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 427
L L++ +ITD S A+ N + ++++ G +T G++ + L L +LNL
Sbjct: 336 ELRVLNIGQCTQITDQSIASIASNLICITNIDLYGCTKVTKCGLEKLMHLPKLRVLNL 393
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 92/179 (51%), Gaps = 9/179 (5%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD+ L H+ K NL+ L+ +FC IS GL HL L +L L+ R + +G+
Sbjct: 220 ITDNALRHISKGLINLECLNLSFCCGISGAGLAHLATLRSLRELNLRSCEGVNNEGIAHL 279
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLS-GLTNLK 183
A G +NLV LD+ C +I +N GL L++L + + ITD + +S L L+
Sbjct: 280 AVGGLNLVCLDVSFCDKIGDVALNHISSGLNHLQNLGLNSSH-ITDEGLCKISRHLRELR 338
Query: 184 SLQI-SCSKVTDSGIAYLKG-LQKLTLLNLEGCPVTAAC-LDSLSALGSLFYLNLNRCQ 239
L I C+++TD IA + L +T ++L GC C L+ L L L LNL Q
Sbjct: 339 VLNIGQCTQITDQSIASIASNLICITNIDLYGCTKVTKCGLEKLMHLPKLRVLNLGLWQ 397
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 101/194 (52%), Gaps = 28/194 (14%)
Query: 301 NLK-CLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAG-LSSLKSLNLDA 357
NLK C ++DT +G + +++L LT L+ LS I+D SL K+A L +L+ L+L
Sbjct: 100 NLKGCYNVTDTSIGHAFVKYLPTLTVLD---LSLCKQITDSSLGKIADFLKNLEFLDLAG 156
Query: 358 R-QITDTGLAALT-SLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
IT+TGL + L L HL+L R I+D+G +L N +
Sbjct: 157 CCNITNTGLLLCSWGLVKLKHLNLRSCRHISDAGILHLSGLSN------------NINAH 204
Query: 415 HIKDLSSLTLLNLSQNCN-LTDKTLELIS-GLTGLVSLNVSNS-RITSAGLRHLKPLKNL 471
K+L++L L Q+C +TD L IS GL L LN+S I+ AGL HL L++L
Sbjct: 205 GNKNLTTLCL----QDCQKITDNALRHISKGLINLECLNLSFCCGISGAGLAHLATLRSL 260
Query: 472 RSLTLESCKVTAND 485
R L L SC+ N+
Sbjct: 261 RELNLRSCEGVNNE 274
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 90/181 (49%), Gaps = 27/181 (14%)
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR-ITDS--GA 389
F ++ +RK+ LS KSL+ + SL+ + L+L G +TD+ G
Sbjct: 66 FPSLAKRGIRKIRILSLKKSLSF-----------VVQSLSCIESLNLKGCYNVTDTSIGH 114
Query: 390 AYLRNFKNLRSLEIC-GGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELIS-GLTG 446
A+++ L L++ +TD+ + I D L +L L+L+ CN+T+ L L S GL
Sbjct: 115 AFVKYLPTLTVLDLSLCKQITDSSLGKIADFLKNLEFLDLAGCCNITNTGLLLCSWGLVK 174
Query: 447 LVSLNVSNSR-ITSAGLRHLKPL---------KNLRSLTLESCKVTANDIKRLQSRDLPN 496
L LN+ + R I+ AG+ HL L KNL +L L+ C+ ++ R S+ L N
Sbjct: 175 LKHLNLRSCRHISDAGILHLSGLSNNINAHGNKNLTTLCLQDCQKITDNALRHISKGLIN 234
Query: 497 L 497
L
Sbjct: 235 L 235
Score = 38.9 bits (89), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 6/136 (4%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHLKD-CSNLQSLDFN 89
+L++L L GVN++ + +A G +L+ +D+S D + D L H+ ++LQ+L N
Sbjct: 259 SLRELNLRSCEGVNNEGIAHLAVGGLNLVCLDVSFCDKIGDVALNHISSGLNHLQNLGLN 318
Query: 90 FCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDLERCTRI-HG 146
I+D GL + R L L L+ + IT Q + + A LI + +DL CT++
Sbjct: 319 SS-HITDEGLCKISRHLRELRVLNIGQCTQITDQSIASIASNLICITNIDLYGCTKVTKC 377
Query: 147 GLVNLKGLMKLESLNI 162
GL L L KL LN+
Sbjct: 378 GLEKLMHLPKLRVLNL 393
>gi|223698658|gb|ACN19012.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 341
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 342 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 374
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 7 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 60 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 223
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 224 -NISPLAGLTALT 235
>gi|328719510|ref|XP_001948716.2| PREDICTED: f-box/LRR-repeat protein 14-like [Acyrthosiphon pisum]
Length = 467
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 152/293 (51%), Gaps = 48/293 (16%)
Query: 52 IASQGSSLLSVDLSG-SDVTDSGL--IHLKDCSNLQSLDFNFCIQISDGGL----EHLRG 104
I +L+S+++SG + D L + L+ N+ L+ + C Q++DGGL + LRG
Sbjct: 156 IVQNVPNLVSLNMSGCYHIKDEDLHQMFLEHHPNITELNLSLCKQLTDGGLIRIADTLRG 215
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER-CTRIHG-GLVNLKGLMK------ 156
L T L + + IT +G A + +K R C + GL ++ G K
Sbjct: 216 L---TRLEIQGCSYITNKGFSHIARKLKKLKYLNLRSCWHLSDVGLSHISGASKDSTDGN 272
Query: 157 --LESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLE 212
LE L ++ C ITD +K +S GL +L+SL +S C +TD+G+ Y+ + L LNL
Sbjct: 273 AQLEFLGLQDCQHITDEGLKYVSEGLRSLRSLNLSFCVNITDTGLNYVSRMNTLDELNLS 332
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVH 271
C D++S +G + YL+ +GC +K+GSL N+ F ++I D+ L+H
Sbjct: 333 AC-------DNISDIG-IGYLS--------EGC---TKLGSL---NVSFCDKIGDQALLH 370
Query: 272 L-KGLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS 321
+ GL L +L+L SC I D+G++ ++ L NL+ L + V GL HLS
Sbjct: 371 VSHGLYGLHTLSLGSCQISDDGILYISKSLRNLEVLNIGQCNSVTDKGLEHLS 423
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 109/237 (45%), Gaps = 19/237 (8%)
Query: 69 VTDSGLIHLKDC-SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN---------NA 118
+TD GLI + D L L+ C I++ G H+ R+ +
Sbjct: 201 LTDGGLIRIADTLRGLTRLEIQGCSYITNKGFSHIARKLKKLKYLNLRSCWHLSDVGLSH 260
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
I+ + G L L L+ C I G +GL L SLN+ +C ITD+ + +
Sbjct: 261 ISGASKDSTDGNAQLEFLGLQDCQHITDEGLKYVSEGLRSLRSLNLSFCVNITDTGLNYV 320
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTA--ACLDSLSALGSLFY 232
S + L L +S C ++D GI YL +G KL LN+ C A L L L
Sbjct: 321 SRMNTLDELNLSACDNISDIGIGYLSEGCTKLGSLNVSFCDKIGDQALLHVSHGLYGLHT 380
Query: 233 LNLNRCQLSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTN-LESLNLDSC 286
L+L CQ+SDDG SK + +L+VLN+G N +TD+ L HL L S++L C
Sbjct: 381 LSLGSCQISDDGILYISKSLRNLEVLNIGQCNSVTDKGLEHLSDSCKLLRSIDLYGC 437
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 91/340 (26%), Positives = 153/340 (45%), Gaps = 51/340 (15%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIAYLKG-LQKL 206
++ + L SLN+ C I D D+ L N+ L +S C ++TD G+ + L+ L
Sbjct: 157 VQNVPNLVSLNMSGCYHIKDEDLHQMFLEHHPNITELNLSLCKQLTDGGLIRIADTLRGL 216
Query: 207 TLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
T L ++GC +T ++ R C S +G L ++ + T
Sbjct: 217 TRLEIQGCSYITNKGFSHIARKLKKLKYLNLR------SCWHLSDVG-LSHISGASKDST 269
Query: 266 DECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
D G LE L L C I DEGL ++ GL
Sbjct: 270 D-------GNAQLEFLGLQDCQHITDEGLKYVS-----------------------EGLR 299
Query: 325 NLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLDL-F 380
+L S+NLSF I+D L ++ +++L LNL A I+D G+ L+ T L L++ F
Sbjct: 300 SLRSLNLSFCVNITDTGLNYVSRMNTLDELNLSACDNISDIGIGYLSEGCTKLGSLNVSF 359
Query: 381 GARITDSGAAYLRN-FKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTL 438
+I D ++ + L +L + ++D G+ +I K L +L +LN+ Q ++TDK L
Sbjct: 360 CDKIGDQALLHVSHGLYGLHTLSLGSCQISDDGILYISKSLRNLEVLNIGQCNSVTDKGL 419
Query: 439 ELISGLTGLV-SLNVSN-SRITSAGLRHLKPLKNLRSLTL 476
E +S L+ S+++ ++IT + + N+R T+
Sbjct: 420 EHLSDSCKLLRSIDLYGCTKITKEAKEKILKMPNIRRDTV 459
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 6/156 (3%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
+ D+ + ++ SL S++LS ++TD+GL ++ + L L+ + C ISD G+ +L
Sbjct: 286 ITDEGLKYVSEGLRSLRSLNLSFCVNITDTGLNYVSRMNTLDELNLSACDNISDIGIGYL 345
Query: 103 -RGLSNLTSLSFRRNNAITAQG-MKAFAGLINLVKLDLERCTRIHGGLVNL-KGLMKLES 159
G + L SL+ + I Q + GL L L L C G++ + K L LE
Sbjct: 346 SEGCTKLGSLNVSFCDKIGDQALLHVSHGLYGLHTLSLGSCQISDDGILYISKSLRNLEV 405
Query: 160 LNIKWCNCITDSDMKPLSGLTN-LKSLQI-SCSKVT 193
LNI CN +TD ++ LS L+S+ + C+K+T
Sbjct: 406 LNIGQCNSVTDKGLEHLSDSCKLLRSIDLYGCTKIT 441
>gi|112961784|gb|ABI28542.1| internalin A [Listeria monocytogenes]
gi|112961796|gb|ABI28550.1| internalin A [Listeria monocytogenes]
Length = 696
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 122/386 (31%), Positives = 178/386 (46%), Gaps = 60/386 (15%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S + +TD + LKD + L + N QI+D + L L+NLT L+ NN IT
Sbjct: 1 FSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQIT--D 52
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L NL +L+L T + L GL L+ L+ N +TD +KPL+ LT L+
Sbjct: 53 IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLE 106
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQL 240
L IS +KV+D + L KLT NLE T + ++ LG +L L+LN QL
Sbjct: 107 RLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQL 159
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D G + + +L L+L N+I++ L L GLT L L L + I + + L GL
Sbjct: 160 KDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLT 213
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------------- 343
L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 214 ALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD 271
Query: 344 ---LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN------ 394
LA L+++ L+ QI+D L L +LT +T L L T+ Y N
Sbjct: 272 VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKVNVSIPNT 329
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLS 420
KN+ I ++D G D++
Sbjct: 330 VKNVTGALIAPATISDGGSYAEPDIT 355
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 110/215 (51%), Gaps = 25/215 (11%)
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
N+I D + L LTNL L L + I D + L NLT NL LELS + S + L
Sbjct: 26 NQIAD--ITPLANLTNLTGLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISAL 78
Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
SGLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 79 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 133
Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 134 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 186
Query: 441 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 187 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 216
>gi|887862|gb|AAA69530.1| internalin, partial [Listeria monocytogenes]
Length = 344
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 107/329 (32%), Positives = 167/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 24 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 77
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L++ N +TD +KPL
Sbjct: 78 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSL--GNQVTD--LKPL 129
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 130 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 182
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 183 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLPGLTKLTELKLGANQISN--I 236
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 237 XPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 292
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 293 FFYNNKVSD-----VSSLANLTNINWLSA 316
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 123/275 (44%), Gaps = 66/275 (24%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 18 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 70
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+L Q+TD
Sbjct: 71 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSL-GNQVTD 125
Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG---------- 412
L L +LT L LD+ +++D + L NL SL ++D
Sbjct: 126 --LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNLDE 181
Query: 413 -------VKHIKDLSSLTLLNLSQNCNLTD--------KTLELISGLTGLVSLNVSNSRI 457
+K I L+SLT NLTD L + GLT L L + ++I
Sbjct: 182 LSLNGNQLKDIGTLASLT--------NLTDLDLANNQISNLAPLPGLTKLTELKLGANQI 233
Query: 458 TS----AGLRHL-------------KPLKNLRSLT 475
++ AGL L P+ NL++LT
Sbjct: 234 SNIXPLAGLTALTNLELNENQLEDISPISNLKNLT 268
>gi|428304096|ref|YP_007140921.1| hypothetical protein Cri9333_0441 [Crinalium epipsammum PCC 9333]
gi|428245631|gb|AFZ11411.1| leucine-rich repeat-containing protein [Crinalium epipsammum PCC
9333]
Length = 504
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 83/236 (35%), Positives = 132/236 (55%), Gaps = 19/236 (8%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
++ L L +LN+ + N I SD+KPL LT L +L++ +K++D + L GL L L+
Sbjct: 87 IQALRNLTTLNL-FANQI--SDVKPLRSLTKLTTLELVSNKISD--VKPLFGLTNLNRLD 141
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L ++ + L+ L L L+L+ ++SD E + +L VL+L N+++D L
Sbjct: 142 LSDNKISD--VKPLTGLTKLTELDLSDNKISD--VEPLFGLTNLGVLDLSRNKLSD--LK 195
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
L GLT L L L++ I D L L L L L+LSD ++ S ++ L+GLT L +
Sbjct: 196 PLWGLTKLTMLLLNTNQISD--LKPLANLTKLTTLDLSDNKI--SDVKPLTGLTKLTELA 251
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
L ISD L+ L GL++L L L+ +I+D + +LT LT +T L L G +I++
Sbjct: 252 LGDNKISD--LKPLLGLTNLTELVLNTNEISD--VTSLTGLTNITSLHLGGNKISN 303
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 127/262 (48%), Gaps = 30/262 (11%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
LQ + LN+ +T+ L+ + AL +L LNL Q+SD + + L L L N
Sbjct: 68 LQGVKNLNISNAEITS--LEGIQALRNLTTLNLFANQISD--VKPLRSLTKLTTLELVSN 123
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
+I+D + L GLTNL L+L I D + LTGL L L+LSD ++ S + L G
Sbjct: 124 KISD--VKPLFGLTNLNRLDLSDNKISD--VKPLTGLTKLTELDLSDNKI--SDVEPLFG 177
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
LTNL ++LS +SD L+ L GL+ L L L+ QI+D L L +LT LT LDL
Sbjct: 178 LTNLGVLDLSRNKLSD--LKPLWGLTKLTMLLLNTNQISD--LKPLANLTKLTTLDLSDN 233
Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDA--------------GVKHIKDLSSLTLLNLS 428
+I+D L L L + ++D I D++SLT L
Sbjct: 234 KISDVKP--LTGLTKLTELALGDNKISDLKPLLGLTNLTELVLNTNEISDVTSLTGLTNI 291
Query: 429 QNCNLTDKTLELISGLTGLVSL 450
+ +L + ++ LTGL L
Sbjct: 292 TSLHLGGNKISNVTSLTGLTKL 313
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 102/203 (50%), Gaps = 19/203 (9%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+NL LD + +ISD ++ L GL+ LT L N ++ GL NL LDL R
Sbjct: 135 TNLNRLDLSDN-KISD--VKPLTGLTKLTELDLSDNKI---SDVEPLFGLTNLGVLDLSR 188
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
L +LK L L L + N SD+KPL+ LT L +L +S +K++D + L
Sbjct: 189 -----NKLSDLKPLWGLTKLTMLLLNTNQISDLKPLANLTKLTTLDLSDNKISD--VKPL 241
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
GL KLT L L ++ L L L +L L LN ++SD + + ++ L+LG
Sbjct: 242 TGLTKLTELALGDNKISD--LKPLLGLTNLTELVLNTNEISD--VTSLTGLTNITSLHLG 297
Query: 261 FNEITDECLVHLKGLTNLESLNL 283
N+I++ + L GLT L L L
Sbjct: 298 GNKISN--VTSLTGLTKLAWLYL 318
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 83/157 (52%), Gaps = 19/157 (12%)
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
L G+ NL N T SL + L +L +LNL A QI+D + L SLT LT L+L
Sbjct: 68 LQGVKNLNISNAEIT-----SLEGIQALRNLTTLNLFANQISD--VKPLRSLTKLTTLEL 120
Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
+I+D + NL L++ ++D VK + L+ LT L+LS N ++D +E
Sbjct: 121 VSNKISDVKPLF--GLTNLNRLDLSDNKISD--VKPLTGLTKLTELDLSDN-KISD--VE 173
Query: 440 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
+ GLT L L++S ++++ LKPL L LT+
Sbjct: 174 PLFGLTNLGVLDLSRNKLSD-----LKPLWGLTKLTM 205
>gi|320167357|gb|EFW44256.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 766
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 90/303 (29%), Positives = 135/303 (44%), Gaps = 7/303 (2%)
Query: 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
K + + +++T GL L L L P+T+ ++ S L L YL+L+ QL+D
Sbjct: 86 KEVDLQSNQITAISPDAFAGLTSLNSLYLSDNPITSISANAFSDLTELSYLHLSYTQLTD 145
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
F+ + +L LNL F +IT L L++L+L++ I TGL L
Sbjct: 146 ISANAFTTLPALVSLNLEFTQITTISAAAFTSLAKLKNLSLNNNQITSVPESAFTGLTAL 205
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKLAGLSSLKSLNLDARQ 359
LEL + Q+ S + LT L + L+ TGIS+ + GL++L +L L Q
Sbjct: 206 VSLELDNNQITSISALAFANLTALSYLGLANNRITGISENTFT---GLTALAALYLLDNQ 262
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
IT A T LT LT L L +IT A L L + +T L
Sbjct: 263 ITSISANAFTDLTALTTLSLALNQITSISANAFTGLTTLAGLSLALNQITSISTNAFTGL 322
Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 479
++L L+L+ N +T + +GLT L L + N++I S L L LTL +
Sbjct: 323 TTLAGLDLALN-QITGISTNAFTGLTTLAVLRLDNNQIASISANAFTGLTMLFYLTLHNN 381
Query: 480 KVT 482
T
Sbjct: 382 SFT 384
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 113/271 (41%), Gaps = 25/271 (9%)
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
++N ITA AFAGL +L L L N IT
Sbjct: 91 QSNQITAISPDAFAGLTSLNSLYLSD-------------------------NPITSISAN 125
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
S LT L L +S +++TD L L LNLE +T + ++L L L+
Sbjct: 126 AFSDLTELSYLHLSYTQLTDISANAFTTLPALVSLNLEFTQITTISAAAFTSLAKLKNLS 185
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
LN Q++ F+ + +L L L N+IT + LT L L L + I
Sbjct: 186 LNNNQITSVPESAFTGLTALVSLELDNNQITSISALAFANLTALSYLGLANNRITGISEN 245
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
TGL L L L D Q+ S + LT L +++L+ I+ S GL++L L+
Sbjct: 246 TFTGLTALAALYLLDNQITSISANAFTDLTALTTLSLALNQITSISANAFTGLTTLAGLS 305
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L QIT A T LT L LDL +IT
Sbjct: 306 LALNQITSISTNAFTGLTTLAGLDLALNQIT 336
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 84/305 (27%), Positives = 130/305 (42%), Gaps = 2/305 (0%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+ + GL++L SL + +N IT+ AF+ L L L L
Sbjct: 94 QITAISPDAFAGLTSLNSL-YLSDNPITSISANAFSDLTELSYLHLSYTQLTDISANAFT 152
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L L SLN+++ IT + L LK+L ++ +++T + GL L L L+
Sbjct: 153 TLPALVSLNLEFTQ-ITTISAAAFTSLAKLKNLSLNNNQITSVPESAFTGLTALVSLELD 211
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
+T+ + + L +L YL L +++ F+ + +L L L N+IT
Sbjct: 212 NNQITSISALAFANLTALSYLGLANNRITGISENTFTGLTALAALYLLDNQITSISANAF 271
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
LT L +L+L I TGL L L L+ Q+ S +GLT L ++L+
Sbjct: 272 TDLTALTTLSLALNQITSISANAFTGLTTLAGLSLALNQITSISTNAFTGLTTLAGLDLA 331
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
I+ S GL++L L LD QI A T LT L +L L T
Sbjct: 332 LNQITGISTNAFTGLTTLAVLRLDNNQIASISANAFTGLTMLFYLTLHNNSFTTLPPGLF 391
Query: 393 RNFKN 397
+ +N
Sbjct: 392 KGLRN 396
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 92/188 (48%), Gaps = 1/188 (0%)
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
GL +L L LSD + S S LT L ++LS+T ++D S L +L SLNL
Sbjct: 103 FAGLTSLNSLYLSDNPITSISANAFSDLTELSYLHLSYTQLTDISANAFTTLPALVSLNL 162
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
+ QIT AA TSL L +L L +IT + L SLE+ +T
Sbjct: 163 EFTQITTISAAAFTSLAKLKNLSLNNNQITSVPESAFTGLTALVSLELDNNQITSISALA 222
Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
+L++L+ L L+ N +T + +GLT L +L + +++ITS L L +L+
Sbjct: 223 FANLTALSYLGLANN-RITGISENTFTGLTALAALYLLDNQITSISANAFTDLTALTTLS 281
Query: 476 LESCKVTA 483
L ++T+
Sbjct: 282 LALNQITS 289
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 96/225 (42%), Gaps = 11/225 (4%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTR 143
L+F IS L L NL+ NN IT+ AF GL LV L+L+ + T
Sbjct: 162 LEFTQITTISAAAFTSLAKLKNLS----LNNNQITSVPESAFTGLTALVSLELDNNQITS 217
Query: 144 IHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
I NL L L N N IT +GLT L +L + +++T
Sbjct: 218 ISALAFANLTALSYLGLAN----NRITGISENTFTGLTALAALYLLDNQITSISANAFTD 273
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
L LT L+L +T+ ++ + L +L L+L Q++ F+ + +L L+L N
Sbjct: 274 LTALTTLSLALNQITSISANAFTGLTTLAGLSLALNQITSISTNAFTGLTTLAGLDLALN 333
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
+IT GLT L L LD+ I TGL L L L
Sbjct: 334 QITGISTNAFTGLTTLAVLRLDNNQIASISANAFTGLTMLFYLTL 378
>gi|290979200|ref|XP_002672322.1| predicted protein [Naegleria gruberi]
gi|284085898|gb|EFC39578.1| predicted protein [Naegleria gruberi]
Length = 318
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 111/231 (48%), Gaps = 4/231 (1%)
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
++ LNL +EIT + L NL+ L+L S I EG L+ L NL L L+D +
Sbjct: 1 MESLNLSNSEITSSGISQFGILKNLQELDLSSNLINSEGANYLSSLYNLTSLALNDNSIT 60
Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
GLR+ S LTNL + L I L+ +++K L L I D GL +L
Sbjct: 61 GEGLRNFSNLTNLTELFLDNNNIGSVGANYLSSNTNIKFLTLSNNSIADEGLENFGNLKS 120
Query: 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS-SLTLLNLSQNCN 432
L HL+L + G YL K L+ L+I LTD + D S+ L+LS+N
Sbjct: 121 LIHLNLNFNNV-QRGLIYLSECKLLKQLDIQHNNLTDQELIDFFDKELSIEELDLSENKK 179
Query: 433 LTDKTLELISGLTGLVSLNV-SNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
L+ K+ + I L LN+ SN ++ L HL L NL +L +C +T
Sbjct: 180 LSGKSFKNICKQRKLSILNIGSNPKLGDLSLSHLASL-NLLTLRANNCGIT 229
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 112/238 (47%), Gaps = 16/238 (6%)
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
LNL +T++ + L +L L+L+ ++ +G S + +L L L N IT E
Sbjct: 4 LNLSNSEITSSGISQFGILKNLQELDLSSNLINSEGANYLSSLYNLTSLALNDNSITGEG 63
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
L + LTNL L LD+ IG G L+ N+K L LS+ + GL + L +L
Sbjct: 64 LRNFSNLTNLTELFLDNNNIGSVGANYLSSNTNIKFLTLSNNSIADEGLENFGNLKSLIH 123
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT-GLTHLDLFGARITDS 387
+NL+F + G L L+ LK L++ +TD L + LDL +++
Sbjct: 124 LNLNFNNVQRG-LIYLSECKLLKQLDIQHNNLTDQELIDFFDKELSIEELDL-----SEN 177
Query: 388 GAAYLRNFKNL---RSLEICGGG----LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 438
++FKN+ R L I G L D + H+ L+ LTL + NC +TDK L
Sbjct: 178 KKLSGKSFKNICKQRKLSILNIGSNPKLGDLSLSHLASLNLLTL--RANNCGITDKGL 233
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 122/241 (50%), Gaps = 16/241 (6%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
S++LS S++T SG+ NLQ LD + + I+ G +L L NLTSL+ +N+IT
Sbjct: 3 SLNLSNSEITSSGISQFGILKNLQELDLSSNL-INSEGANYLSSLYNLTSLAL-NDNSIT 60
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC----NCITDSDMKPL 176
+G++ F+ L NL +L L+ G L + NIK+ N I D ++
Sbjct: 61 GEGLRNFSNLTNLTELFLDNNNIGSVGANYLSS-----NTNIKFLTLSNNSIADEGLENF 115
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT-AACLDSLSALGSLFYLNL 235
L +L L ++ + V G+ YL + L L+++ +T +D S+ L+L
Sbjct: 116 GNLKSLIHLNLNFNNV-QRGLIYLSECKLLKQLDIQHNNLTDQELIDFFDKELSIEELDL 174
Query: 236 NRC-QLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+ +LS + K L +LN+G N ++ D L HL L NL +L ++CGI D+GL
Sbjct: 175 SENKKLSGKSFKNICKQRKLSILNIGSNPKLGDLSLSHLASL-NLLTLRANNCGITDKGL 233
Query: 294 V 294
V
Sbjct: 234 V 234
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 98/200 (49%), Gaps = 8/200 (4%)
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
++ L LS++++ SSG+ L NL+ ++LS I+ L+ L +L SL L+ IT
Sbjct: 1 MESLNLSNSEITSSGISQFGILKNLQELDLSSNLINSEGANYLSSLYNLTSLALNDNSIT 60
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421
GL ++LT LT L L I GA YL + N++ L + + D G+++ +L S
Sbjct: 61 GEGLRNFSNLTNLTELFLDNNNIGSVGANYLSSNTNIKFLTLSNNSIADEGLENFGNLKS 120
Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
L LNL N N + L +S L L++ ++ +T L + L++E +
Sbjct: 121 LIHLNL--NFNNVQRGLIYLSECKLLKQLDIQHNNLTDQELIDFFD----KELSIEELDL 174
Query: 482 TANDIKRLQSRDLPNLVSFR 501
+ N K+L + N+ R
Sbjct: 175 SEN--KKLSGKSFKNICKQR 192
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 106/239 (44%), Gaps = 14/239 (5%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
+ESLN+ IT S + L NL+ L +S + + G YL L LT L L +
Sbjct: 1 MESLNLSNSE-ITSSGISQFGILKNLQELDLSSNLINSEGANYLSSLYNLTSLALNDNSI 59
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
T L + S L +L L L+ + G S ++K L L N I DE L + L
Sbjct: 60 TGEGLRNFSNLTNLTELFLDNNNIGSVGANYLSSNTNIKFLTLSNNSIADEGLENFGNLK 119
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-----RHLSGLTNLESINL 331
+L LNL+ + GL+ L+ LK L++ + L + LS +E ++L
Sbjct: 120 SLIHLNLNFNNV-QRGLIYLSECKLLKQLDIQHNNLTDQELIDFFDKELS----IEELDL 174
Query: 332 SFT-GISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSG 388
S +S S + + L LN+ + ++ D L+ L SL LT L ITD G
Sbjct: 175 SENKKLSGKSFKNICKQRKLSILNIGSNPKLGDLSLSHLASLNLLT-LRANNCGITDKG 232
>gi|223698886|gb|ACN19164.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIGD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 171
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 172 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 225
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 226 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 283
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T++ Y
Sbjct: 284 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 341
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 342 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 122/253 (48%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ IGD + L L NL
Sbjct: 7 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIGD--ITPLANLTNL 59
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 60 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 223
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 224 -NISPLAGLTALT 235
>gi|449463292|ref|XP_004149368.1| PREDICTED: F-box/LRR-repeat protein 3-like [Cucumis sativus]
Length = 663
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 129/462 (27%), Positives = 208/462 (45%), Gaps = 63/462 (13%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L+ LCL + D + +IA++ L S+DLS +T+ L + +L+ L C
Sbjct: 187 LKLLCLNWCLHITDLGVGLIATKCKELRSLDLSFLPITEKCLPTILQLQHLEELILEECH 246
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNL 151
I D GLE L+ SL F L+L RC I H GL +L
Sbjct: 247 GIDDEGLEALKRNCKRNSLKF----------------------LNLSRCPSISHSGLSSL 284
Query: 152 -KGLMKLESLNIKWCNCIT-DSDM-KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ-KLT 207
G L+ LN+ + + ++ +DM K L + L+S+++ C +T SG+ + + L
Sbjct: 285 IIGSENLQKLNLSYGSSVSITTDMAKCLHNFSGLQSIKLDCCSLTTSGVKTIANWRASLK 344
Query: 208 LLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
L+L C VT CL S+ + + D C + GS+ N IT
Sbjct: 345 ELSLSKCAGVTDECL-------SILVQKHKQLRKLDITCCRKITYGSI-------NSITS 390
Query: 267 ECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN-LKCLELSDTQVGSSGLRHLSGLT 324
C + L SL ++SC + E V + C L+ L+L+D ++ + GL+ +S +
Sbjct: 391 SC-------SFLVSLKMESCSLVPREAYVLIGQRCPYLEELDLTDNEIDNEGLKSISKCS 443
Query: 325 NLESINLSFT-GISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL-- 379
L + L I+D L +A G +K L+L + ITD G+AA G L++
Sbjct: 444 RLSVLKLGICLNINDDGLCHIASGCPKIKELDLYRSTGITDRGIAATAG--GCPALEMIN 501
Query: 380 --FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIK-DLSSLTLLNLSQNCNLTD 435
+ +ITDS L NL++LEI G ++ G+ I LT+L++ + N+ D
Sbjct: 502 IAYNDKITDSSLISLSKCLNLKALEIRGCCCISSIGLSAIAMGCKQLTVLDIKKCVNVND 561
Query: 436 K-TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
L L L +N+S +T GL L + LR++T+
Sbjct: 562 DGMLPLAQFSHNLKQINLSYCSVTDVGLLSLASINCLRNMTI 603
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 123/465 (26%), Positives = 206/465 (44%), Gaps = 41/465 (8%)
Query: 49 MDVIASQGSSLLSVDLS-GSDVTDSGLIHLKDC--SNLQSLDFNFCIQISDGGLEHL-RG 104
+ ++ + S+ +DL+ V DS LI + + L+S+D + S+ GL +L
Sbjct: 73 IRTVSPRYPSISKLDLTLCPHVEDSFLISVSTAWKTTLRSIDLSRSRSFSNVGLSNLVTS 132
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLESLN 161
+ L ++ A+T +K A NL KL L RC I G V + G KL+ L
Sbjct: 133 CTGLVEINLSNGVALTDSVIKVLAEAKNLEKLWLSRCKSITDMGIGCVAV-GCKKLKLLC 191
Query: 162 IKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAA 219
+ WC ITD + ++ L+SL +S +T+ + + LQ L L LE C +
Sbjct: 192 LNWCLHITDLGVGLIATKCKELRSLDLSFLPITEKCLPTILQLQHLEELILEECHGIDDE 251
Query: 220 CLDSLS---ALGSLFYLNLNRCQ-LSDDGCEKFSKIGS--LKVLNLGFNE---ITDECLV 270
L++L SL +LNL+RC +S G IGS L+ LNL + IT +
Sbjct: 252 GLEALKRNCKRNSLKFLNLSRCPSISHSGLSSLI-IGSENLQKLNLSYGSSVSITTDMAK 310
Query: 271 HLKGLTNLESLNLDSCGIGDEGL-------VNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
L + L+S+ LD C + G+ +L L KC ++D + +H
Sbjct: 311 CLHNFSGLQSIKLDCCSLTTSGVKTIANWRASLKELSLSKCAGVTDECLSILVQKH---- 366
Query: 324 TNLESINLSFT-GISDGSLRKL-AGLSSLKSLNLDARQITDTGLAALT--SLTGLTHLDL 379
L ++++ I+ GS+ + + S L SL +++ + L L LDL
Sbjct: 367 KQLRKLDITCCRKITYGSINSITSSCSFLVSLKMESCSLVPREAYVLIGQRCPYLEELDL 426
Query: 380 FGARITDSGAAYLRNFKNLRSLE--ICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDK 436
I + G + L L+ IC + D G+ HI + L+L ++ +TD+
Sbjct: 427 TDNEIDNEGLKSISKCSRLSVLKLGICLN-INDDGLCHIASGCPKIKELDLYRSTGITDR 485
Query: 437 TLELISG-LTGLVSLNVS-NSRITSAGLRHLKPLKNLRSLTLESC 479
+ +G L +N++ N +IT + L L NL++L + C
Sbjct: 486 GIAATAGGCPALEMINIAYNDKITDSSLISLSKCLNLKALEIRGC 530
>gi|344248327|gb|EGW04431.1| Insulin-like growth factor-binding protein complex acid labile
chain [Cricetulus griseus]
Length = 416
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 134/301 (44%), Gaps = 1/301 (0%)
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
GL L+ L +S + + L +L L L+ VTA + + +L +L+L+
Sbjct: 29 GLGELRELDLSRNALRSVKANVFIHLPRLQKLYLDRNFVTAVAPGAFLGMKALRWLDLSH 88
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+++ + F + L VL L N IT K L LE L L I G
Sbjct: 89 NRVAGLLEDTFPGLLGLHVLRLAHNAITSLRPRTFKDLHFLEELQLGHNRIRQLGEKTFE 148
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
GL L+ L L+D Q+ + SGL N+ +NLS + + R GLS L SL+L+
Sbjct: 149 GLGQLEVLTLNDNQIHEVKMGAFSGLFNVAVMNLSGNCLRNLPERVFQGLSKLHSLHLEH 208
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
+ L T L+GL L L G I+ + L L L++ LT + +
Sbjct: 209 SCLGRIRLHTFTGLSGLRRLFLRGNSISITEEQSLAGLSELLELDLTANQLTHLPRRLFQ 268
Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 477
L L L LS N L+ + +++S L + L++S++R+ + PL LR L+L
Sbjct: 269 GLGQLEYLLLSNN-RLSALSEDVLSPLQRVFWLDISHNRLEALSEGLFSPLGRLRYLSLR 327
Query: 478 S 478
+
Sbjct: 328 N 328
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 102/395 (25%), Positives = 154/395 (38%), Gaps = 31/395 (7%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG-----LMK 156
+GL NL L N Q F GL L +LDL R L ++K L +
Sbjct: 3 FQGLGNLRELVLAGNKLAYLQP-SLFCGLGELRELDLSR-----NALRSVKANVFIHLPR 56
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L+ L + N +T G+ L+ L +S ++V GL L +L L +
Sbjct: 57 LQKLYLD-RNFVTAVAPGAFLGMKALRWLDLSHNRVAGLLEDTFPGLLGLHVLRLAHNAI 115
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
T+ + L L L L ++ G + F +G L+VL L N+I + + GL
Sbjct: 116 TSLRPRTFKDLHFLEELQLGHNRIRQLGEKTFEGLGQLEVLTLNDNQIHEVKMGAFSGLF 175
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
N+ +NL + + GL L L L + +G L +GL+ L + L I
Sbjct: 176 NVAVMNLSGNCLRNLPERVFQGLSKLHSLHLEHSCLGRIRLHTFTGLSGLRRLFLRGNSI 235
Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
S + LAGLS L L+L A Q+T L L +L L R++ L +
Sbjct: 236 SITEEQSLAGLSELLELDLTANQLTHLPRRLFQGLGQLEYLLLSNNRLSALSEDVLSPLQ 295
Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL----NV 452
+ L+I L L L L+L N +L+ S GL L N
Sbjct: 296 RVFWLDISHNRLEALSEGLFSPLGRLRYLSLRNN------SLQTFSPQPGLERLWLDANP 349
Query: 453 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 487
+ R PLK LR L++ + ++
Sbjct: 350 WDCRC---------PLKALRDFALQNPSIVPRFVQ 375
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 112/255 (43%), Gaps = 42/255 (16%)
Query: 47 KWMDVIASQGSSLLS-----------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQIS 95
+W+D+ ++ + LL + L+ + +T KD L+ L +I
Sbjct: 82 RWLDLSHNRVAGLLEDTFPGLLGLHVLRLAHNAITSLRPRTFKDLHFLEELQLGHN-RIR 140
Query: 96 DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE-RCTRIHGGLVNLKGL 154
G + GL L L+ +N I M AF+GL N+ ++L C R V +GL
Sbjct: 141 QLGEKTFEGLGQLEVLTLN-DNQIHEVKMGAFSGLFNVAVMNLSGNCLRNLPERV-FQGL 198
Query: 155 MKLESLNIKWC-----------------------NCITDSDMKPLSGLTNLKSLQISCSK 191
KL SL+++ N I+ ++ + L+GL+ L L ++ ++
Sbjct: 199 SKLHSLHLEHSCLGRIRLHTFTGLSGLRRLFLRGNSISITEEQSLAGLSELLELDLTANQ 258
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL--NRCQLSDDGCEKFS 249
+T +GL +L L L ++A D LS L +F+L++ NR + +G FS
Sbjct: 259 LTHLPRRLFQGLGQLEYLLLSNNRLSALSEDVLSPLQRVFWLDISHNRLEALSEGL--FS 316
Query: 250 KIGSLKVLNLGFNEI 264
+G L+ L+L N +
Sbjct: 317 PLGRLRYLSLRNNSL 331
>gi|428225640|ref|YP_007109737.1| hypothetical protein GEI7407_2206 [Geitlerinema sp. PCC 7407]
gi|427985541|gb|AFY66685.1| leucine-rich repeat-containing protein [Geitlerinema sp. PCC 7407]
Length = 504
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 107/374 (28%), Positives = 173/374 (46%), Gaps = 57/374 (15%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
GL +L L+ L L + SD++PLS L NL++L +S + +TD + L L L
Sbjct: 85 GLTDLSPLVSLPQLTGLSLYNSSLSDLRPLSSLPNLRALDLSYANLTD--VTVLGTLGTL 142
Query: 207 TLLNLEGCPV--------------------TAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
LNL G PV T L +L L +L L+L+ Q+ D
Sbjct: 143 QALNLRGNPVRDLRPLQGLQRLHTLTLGWSTVTDLSTLPTLPNLHQLDLSGSQVGD--IR 200
Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN--------------LDSCGIGDEG 292
+ L+ LNL N I+ L + L +L+ N L+S + +
Sbjct: 201 SLAPQPRLETLNLSANRISSIALPAMPSLRSLDLENNALTRVTIPASMGKLESLNLANNA 260
Query: 293 LVNLT---GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
+ +L + L+ L L+ Q+ + +R ++ L+ ++LSF I+D L LA L +
Sbjct: 261 IASLQFGGQIPALRRLSLASNQL--TEVRAIASQPQLQELDLSFNQITD--LGPLASLGA 316
Query: 350 LKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
++ L + R I+D L L LT L LDL A I D LR +NL +L + G +
Sbjct: 317 IRVLKISGNRPISD--LRPLAGLTTLQALDLSEASIRD--ITPLRGLRNLETLVLSGNQI 372
Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 468
++ + L+ L+ L + N ++D L I+ L L +L + ++RITS +R L L
Sbjct: 373 QQ--LESLSGLNRLSYLAIGGN-QISD--LRAIAALYSLQTLMLDSNRITS--VRPLASL 425
Query: 469 KNLRSLTLESCKVT 482
L+ LTL + ++T
Sbjct: 426 GQLKVLTLGNNQIT 439
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 120/410 (29%), Positives = 165/410 (40%), Gaps = 105/410 (25%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL-----SFRRNNAITAQGMKAFAGLI 131
L D S L SL + + + L LR LS+L +L S+ +T G +
Sbjct: 86 LTDLSPLVSLPQLTGLSLYNSSLSDLRPLSSLPNLRALDLSYANLTDVTVLGTLGTLQAL 145
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
NL R + L L+GL +L +L + W T +D+ L L NL L +S S+
Sbjct: 146 NL------RGNPVRD-LRPLQGLQRLHTLTLGWS---TVTDLSTLPTLPNLHQLDLSGSQ 195
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL-------------------GSLFY 232
V D I L +L LNL +++ L ++ +L G L
Sbjct: 196 VGD--IRSLAPQPRLETLNLSANRISSIALPAMPSLRSLDLENNALTRVTIPASMGKLES 253
Query: 233 LNL-----------------NRCQLSDDGCEKFSKIGS---LKVLNLGFNEITD------ 266
LNL R L+ + + I S L+ L+L FN+ITD
Sbjct: 254 LNLANNAIASLQFGGQIPALRRLSLASNQLTEVRAIASQPQLQELDLSFNQITDLGPLAS 313
Query: 267 ---------------ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
L L GLT L++L+L I D + L GL NL+ L LS Q
Sbjct: 314 LGAIRVLKISGNRPISDLRPLAGLTTLQALDLSEASIRD--ITPLRGLRNLETLVLSGNQ 371
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD--------- 362
+ L LSGL L + + ISD LR +A L SL++L LD+ +IT
Sbjct: 372 IQQ--LESLSGLNRLSYLAIGGNQISD--LRAIAALYSLQTLMLDSNRITSVRPLASLGQ 427
Query: 363 -----------TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
T A L +LTGLT L L RIT+ A L NLR L
Sbjct: 428 LKVLTLGNNQITDPAPLAALTGLTVLQLPQNRITNFDA--LATLTNLRIL 475
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 121/281 (43%), Gaps = 56/281 (19%)
Query: 75 IHLKDCSNLQSLDFN------FCIQISDGGLEHLRGLSN-LTSLSF-------RR----N 116
I L +L+SLD I S G LE L +N + SL F RR +
Sbjct: 221 IALPAMPSLRSLDLENNALTRVTIPASMGKLESLNLANNAIASLQFGGQIPALRRLSLAS 280
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI-KWCNCITDSDMKP 175
N +T ++A A L +LDL + +L L L ++ + K SD++P
Sbjct: 281 NQLTE--VRAIASQPQLQELDLS-----FNQITDLGPLASLGAIRVLKISGNRPISDLRP 333
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+GLT L++L +S + + D I L+GL+ L L L G + L+SLS L L YL +
Sbjct: 334 LAGLTTLQALDLSEASIRD--ITPLRGLRNLETLVLSGNQIQQ--LESLSGLNRLSYLAI 389
Query: 236 NRCQLSD--------------------DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
Q+SD + +G LKVL LG N+ITD L L
Sbjct: 390 GGNQISDLRAIAALYSLQTLMLDSNRITSVRPLASLGQLKVLTLGNNQITDPA--PLAAL 447
Query: 276 TNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSS 315
T L L L I + + L LT NL+ L L + V
Sbjct: 448 TGLTVLQLPQNRITNFDALATLT---NLRILGLWENPVSPP 485
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 138/308 (44%), Gaps = 56/308 (18%)
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
L L +L L L+L LSD S + +L+ L+L + +TD + L L L++
Sbjct: 89 LSPLVSLPQLTGLSLYNSSLSD--LRPLSSLPNLRALDLSYANLTDVTV--LGTLGTLQA 144
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
LNL + D L L GL L L L + V + L L L NL ++LS G G
Sbjct: 145 LNLRGNPVRD--LRPLQGLQRLHTLTLGWSTV--TDLSTLPTLPNLHQLDLS--GSQVGD 198
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSL-------TGLTHLDLFGA-------RITD 386
+R LA L++LNL A +I+ L A+ SL LT + + + + +
Sbjct: 199 IRSLAPQPRLETLNLSANRISSIALPAMPSLRSLDLENNALTRVTIPASMGKLESLNLAN 258
Query: 387 SGAAYLR---NFKNLRSLEICGGGLT--------------DAGVKHIKDLSSLT------ 423
+ A L+ LR L + LT D I DL L
Sbjct: 259 NAIASLQFGGQIPALRRLSLASNQLTEVRAIASQPQLQELDLSFNQITDLGPLASLGAIR 318
Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 483
+L +S N ++D L ++GLT L +L++S A +R + PL+ LR+ LE+ ++
Sbjct: 319 VLKISGNRPISD--LRPLAGLTTLQALDLSE-----ASIRDITPLRGLRN--LETLVLSG 369
Query: 484 NDIKRLQS 491
N I++L+S
Sbjct: 370 NQIQQLES 377
>gi|75907715|ref|YP_322011.1| small GTP-binding protein domain-containing protein [Anabaena
variabilis ATCC 29413]
gi|75701440|gb|ABA21116.1| Small GTP-binding protein domain protein [Anabaena variabilis ATCC
29413]
Length = 1107
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 102/335 (30%), Positives = 164/335 (48%), Gaps = 32/335 (9%)
Query: 154 LMKLESL----NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
L +LESL + + D +K +SG NLK+L + L GL L L
Sbjct: 38 LQQLESLILGKQVGGYEWVGDRYLKKVSG-NNLKTLPLE-----------LLGLPNLRKL 85
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
++ G P+ D ++ + L L L R ++++ E + + +L L L N+IT E
Sbjct: 86 DISGNPL-ERIPDLVTQILHLEELILIRVEITE-IPEAIANLTNLTHLILFSNQIT-ETP 142
Query: 270 VHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
+ LTNL L+L I + E + NLT L +L T++ + ++ LTNL
Sbjct: 143 EAIAKLTNLTQLDLSDNQITEIPEAIANLTNLTHLILFSNQITEIPEA----IANLTNLT 198
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
++L I++ + +A L++L L+L QIT+ A+ +LT LTHL LF +IT+
Sbjct: 199 QLDLGDNQITEIP-KAIANLTNLTQLDLGDNQITEIP-KAIANLTNLTHLILFSNQITEI 256
Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
A + N NL L++ +T+ K I +L++LT L LS N + E I+ LT L
Sbjct: 257 PEA-IANLTNLMQLDLSYNQITEIP-KAIANLTNLTQLVLSDNK--ITEIPEAIANLTNL 312
Query: 448 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
L++S+++IT + L NL L K+T
Sbjct: 313 TQLDLSDNKITEIP-ETIANLTNLTELYFNYNKIT 346
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 159/327 (48%), Gaps = 43/327 (13%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L +DLS + +T+ + + +NL L F QI++ E + L+NLT L +
Sbjct: 149 TNLTQLDLSDNQITEIPEA-IANLTNLTHLIL-FSNQITEIP-EAIANLTNLTQLDLG-D 204
Query: 117 NAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N IT + KA A L NL +LDL + T I + NL L L I + N IT+ +
Sbjct: 205 NQIT-EIPKAIANLTNLTQLDLGDNQITEIPKAIANLTNLTHL----ILFSNQITEIP-E 258
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
++ LTNL L +S +++T+ A + L LT L L +T ++++ L +L L+
Sbjct: 259 AIANLTNLMQLDLSYNQITEIPKA-IANLTNLTQLVLSDNKITEIP-EAIANLTNLTQLD 316
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
L+ ++++ E + + +L L +N+IT + + LTNL L+L S I
Sbjct: 317 LSDNKITE-IPETIANLTNLTELYFNYNKIT-QIAEAIAKLTNLTELHLSSNQI------ 368
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
TQ+ + ++ LTNL + L++ I+ + +A L++L L+
Sbjct: 369 ---------------TQIPEA----IANLTNLTELYLNYNKITQIA-EAIAKLTNLTELH 408
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFG 381
LD QIT AL SL L LDL G
Sbjct: 409 LDGNQITQIP-EALESLPKLEKLDLRG 434
>gi|384251251|gb|EIE24729.1| RNI-like protein [Coccomyxa subellipsoidea C-169]
Length = 498
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 107/347 (30%), Positives = 160/347 (46%), Gaps = 58/347 (16%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTD---SGIAYLK 201
G V L GL +LE L K C+ ++ + L +LK+ ++CS +++D + IA L+
Sbjct: 127 GFPVMLTGLRQLELLACKGCSGLSSRPFAGIESLVSLKTCLLNCSLRMSDDTCADIASLR 186
Query: 202 GLQKLTLL--NLEGC--P--VTAACLDSLSALGSLFYLNLN-RCQLSDDGCEKFSK---- 250
+Q L L LEGC P +T A L SL + L L+L+ +SD + ++
Sbjct: 187 QVQTLGLACSALEGCLTPACITHAGLRSLCGMTQLTALDLSGHAAISDASMAEIARHLTR 246
Query: 251 -----IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
+ N G +TD + L LT LES+ L +G G L L L+CL
Sbjct: 247 LIDLDLRRPACDNPGAAVVTDAGIAALASLTLLESVRLSQAQVGQAGCAALASLPRLRCL 306
Query: 306 E------LSDTQVGS-SGLRHLS--------------------GLTNLESINLS--FTGI 336
E LSDT V + LRHLS G+ L ++LS +
Sbjct: 307 ELSYCDSLSDTPVCELTRLRHLSELSLAGCASVTDIAVTALVRGMPELMRLDLSACHMHV 366
Query: 337 SDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS---LTGLTHLDLFGA-RITDSGAAY 391
D SL +A L +L+ L L + +++D G+ L S LTHLD+ G RI+D+GA
Sbjct: 367 GDISLYAIATLPNLQVLRLHSCERVSDMGIGGLCSGAAAAALTHLDVRGCERISDAGATS 426
Query: 392 L-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
+ R K L+ SLE C + D G++ + L L +L + TD
Sbjct: 427 IGRCLKQLQYLSLEHC-HLIGDRGIRTLSGLPHLEILRVGGTGATTD 472
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 135/284 (47%), Gaps = 33/284 (11%)
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDM----KPLSGLTNLKSLQISC-----SKVTDS 195
H GL +L G+ +L +L++ I+D+ M + L+ L +L + +C + VTD+
Sbjct: 209 HAGLRSLCGMTQLTALDLSGHAAISDASMAEIARHLTRLIDLDLRRPACDNPGAAVVTDA 268
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSL 254
GIA L L L + L V A +L++L L L L+ C LSD + +++ L
Sbjct: 269 GIAALASLTLLESVRLSQAQVGQAGCAALASLPRLRCLELSYCDSLSDTPVCELTRLRHL 328
Query: 255 KVLNL-GFNEITDECLVHL-KGLTNLESLNLDSC--GIGDEGLVNLTGLCNLKCLELSDT 310
L+L G +TD + L +G+ L L+L +C +GD L + L NL+ L L
Sbjct: 329 SELSLAGCASVTDIAVTALVRGMPELMRLDLSACHMHVGDISLYAIATLPNLQVLRLHSC 388
Query: 311 Q----VGSSGLRHLSGLTNLESINLSFTG---ISDGSLRKLAG-LSSLKSLNLD-ARQIT 361
+ +G GL SG +L G ISD + L L+ L+L+ I
Sbjct: 389 ERVSDMGIGGL--CSGAAAAALTHLDVRGCERISDAGATSIGRCLKQLQYLSLEHCHLIG 446
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGA---AYLRNFKNLRSLE 402
D G + +L+GL HL++ R+ +GA ++ ++F LE
Sbjct: 447 DRG---IRTLSGLPHLEIL--RVGGTGATTDSFAQDFTRRVRLE 485
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 104/230 (45%), Gaps = 35/230 (15%)
Query: 42 PG---VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGG 98
PG V D + +AS + L SV LS + V +G L L+ L+ ++C +SD
Sbjct: 260 PGAAVVTDAGIAALASL-TLLESVRLSQAQVGQAGCAALASLPRLRCLELSYCDSLSDTP 318
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVNLKGLMKL 157
+ L L +L+ LS ++T + A G+ L++LDL C +H G
Sbjct: 319 VCELTRLRHLSELSLAGCASVTDIAVTALVRGMPELMRLDLSAC-HMHVG---------- 367
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL---KGLQKLTLLNLEG 213
D + ++ L NL+ L++ SC +V+D GI L LT L++ G
Sbjct: 368 ------------DISLYAIATLPNLQVLRLHSCERVSDMGIGGLCSGAAAAALTHLDVRG 415
Query: 214 CP-VTAACLDSLS-ALGSLFYLNLNRCQL-SDDGCEKFSKIGSLKVLNLG 260
C ++ A S+ L L YL+L C L D G S + L++L +G
Sbjct: 416 CERISDAGATSIGRCLKQLQYLSLEHCHLIGDRGIRTLSGLPHLEILRVG 465
>gi|56797881|emb|CAH04902.1| internalin A [Listeria monocytogenes]
Length = 773
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 121/385 (31%), Positives = 181/385 (47%), Gaps = 60/385 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 71 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 124
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 125 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 176
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT+L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 177 ANLTSLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILANLDEL 229
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L ++I++ L L GLT L L L + I + +
Sbjct: 230 SLNGNQLKDIGT--LASLTNLTDLDLANDQISN--LAPLSGLTKLTELKLGANQISN--I 283
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 284 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 341
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 342 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKV 399
Query: 394 N------FKNLRSLEICGGGLTDAG 412
N KN+ I ++D G
Sbjct: 400 NVSIPNTVKNVTGALIAPATISDGG 424
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 128/256 (50%), Gaps = 25/256 (9%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 63 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 118
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 119 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 171
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ LA L+SL+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 172 DLKPLANLTSLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILANLD 227
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
L + G L D G + L++LT L+L+ N +++ L +SGLT L L + ++I+
Sbjct: 228 ELSLNGNQLKDIGT--LASLTNLTDLDLA-NDQISN--LAPLSGLTKLTELKLGANQIS- 281
Query: 460 AGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 282 ----NISPLAGLTALT 293
>gi|431892162|gb|ELK02609.1| F-box/LRR-repeat protein 14 [Pteropus alecto]
Length = 412
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 160/324 (49%), Gaps = 41/324 (12%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEISSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-K 273
LS +G + R + +GC +G ++ ++TD L H+ +
Sbjct: 180 R-------HLSDVGIGHLAGMTRS--AAEGC-----LGLEQLTLQDCQKLTDLSLKHISR 225
Query: 274 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLSGLTNLESINL 331
GLT L LNL C GI D GL++L+ + +L+ L L S + +G+ HL+ + S+ L
Sbjct: 226 GLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLA----MGSLRL 281
Query: 332 SFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDLFG-ARITDS 387
S +SD + R + + L++LN+ +ITD GL + L+ LT +DL+G RIT
Sbjct: 282 SGLDVSDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKR 341
Query: 388 GAAYLRNFKNLRSLEICGGGLTDA 411
G + L+ L + +TD+
Sbjct: 342 GLERITQLPCLKVLNLGLWQMTDS 365
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 99/332 (29%), Positives = 161/332 (48%), Gaps = 73/332 (21%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ G+ N++SL +S C +TD+G+ A+++ + L LNL C
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEISSLRALNLSLCK----------------- 128
Query: 233 LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GI 288
Q++D + ++ + L+VL LG + IT+ L+ + GL L+SLNL SC +
Sbjct: 129 ------QITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHL 182
Query: 289 GDEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-IS 337
D G+ +L G+ L+ L L D Q + L+H+S GLT L +NLSF G IS
Sbjct: 183 SDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGIS 242
Query: 338 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
D L L+ + SL+SLNL + I+DTG+ L
Sbjct: 243 DAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLA--------------------------- 275
Query: 397 NLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN 454
+ SL + G ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++
Sbjct: 276 -MGSLRLSGLDVSDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYG 334
Query: 455 -SRITSAGLRHLKPLKNLRSLTLESCKVTAND 485
+RIT GL + L L+ L L ++T ++
Sbjct: 335 CTRITKRGLERITQLPCLKVLNLGLWQMTDSE 366
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 90/306 (29%), Positives = 153/306 (50%), Gaps = 45/306 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ +S+L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEISSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLT 297
+SD G + +GSL++ L +++D+ + + + + L +LN+ C I D+GL +
Sbjct: 266 ISDTGIMHLA-MGSLRLSGL---DVSDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIA 321
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
HLS LT ++ T I+ L ++ L LK LNL
Sbjct: 322 --------------------EHLSQLTGIDLYGC--TRITKRGLERITQLPCLKVLNLGL 359
Query: 358 RQITDT 363
Q+TD+
Sbjct: 360 WQMTDS 365
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 89/201 (44%), Gaps = 54/201 (26%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
A G ++L L++ D + + + L++L I
Sbjct: 275 A-----------------------MGSLRLSGLDVS-----DDGINRMVRQMHGLRTLNI 306
Query: 188 -SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
C ++TD G+ + + L +LT ++L GC +++ G
Sbjct: 307 GQCVRITDKGLELIAEHLSQLTGIDLYGCT-----------------------RITKRGL 343
Query: 246 EKFSKIGSLKVLNLGFNEITD 266
E+ +++ LKVLNLG ++TD
Sbjct: 344 ERITQLPCLKVLNLGLWQMTD 364
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 11/144 (7%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFR 114
G LL++ G ++D+GL+HL +L+SL+ C ISD G+ HL G L+ L
Sbjct: 229 GLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLD-- 285
Query: 115 RNNAITAQGM-KAFAGLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDS 171
++ G+ + + L L++ +C RI + L + L +L +++ C IT
Sbjct: 286 ----VSDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKR 341
Query: 172 DMKPLSGLTNLKSLQISCSKVTDS 195
++ ++ L LK L + ++TDS
Sbjct: 342 GLERITQLPCLKVLNLGLWQMTDS 365
>gi|406831706|ref|ZP_11091300.1| peptidase M56 BlaR1 [Schlesneria paludicola DSM 18645]
Length = 1125
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 94/403 (23%), Positives = 174/403 (43%), Gaps = 53/403 (13%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
GL+ G + LS +R++ I + G+++ A K L+ G + ++
Sbjct: 697 GLKFTEGRRKIQVLSLKRSDHIQSVGLRSGAAA---SKHPLDEANTRDGDIAAAIDRLRK 753
Query: 158 ESLNIK----------WCNCITD-SDMKPLSG---------LTNLKSLQISCSKV--TDS 195
+ + ++ W I D S P+SG ++ +SL + V T +
Sbjct: 754 QEIFVREFNSRNDPRYWIQVIVDLSRTIPISGDEILVDIETISRDRSLDLHLKNVDLTPA 813
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
+A L + ++ L L G + L ++S L + L L +DDG ++ + +L+
Sbjct: 814 SVARLGATKHISTLELSGRSINDELLQAISNL-PIGRLELGSGPYTDDGVKQLANCVALE 872
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
+++ IT++C HL L L + L S L L + +L+ + +S T+ +
Sbjct: 873 SISIAGPSITNDCFTHLVRLPRLRGVGLRSSQFTSGVLATLARIPDLRRMTISTTEQLTF 932
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
L S L +++ FTG + G D A L
Sbjct: 933 DLGPFSELRSVD-----FTGATFGD---------------------DLTHALAEKCPRLE 966
Query: 376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
+ + IT++G A L ++LR L + + D I+ + +L L+L+ NC++ D
Sbjct: 967 EASIRNSSITNAGVAALVPLRHLRVLALDRAQIDDRIADSIQKMPNLEWLDLN-NCDIGD 1025
Query: 436 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 478
+TL SG + L LN+ ++I++ GL + LKN+R+L+L S
Sbjct: 1026 RTLAAASGCSRLSYLNLGQTQISNEGLAVIGKLKNIRNLSLWS 1068
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 114/251 (45%), Gaps = 8/251 (3%)
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
TD +K L+ L+S+ I+ +T+ +L L +L + L T+ L +L+ +
Sbjct: 858 TDDGVKQLANCVALESISIAGPSITNDCFTHLVRLPRLRGVGLRSSQFTSGVLATLARIP 917
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
L + ++ + FS++ S+ F + L + LE ++ + I
Sbjct: 918 DLRRMTISTTEQLTFDLGPFSELRSVDFTGATFGDDLTHALA--EKCPRLEEASIRNSSI 975
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
+ G+ L L +L+ L L Q+ + + NLE ++L+ I D +L +G S
Sbjct: 976 TNAGVAALVPLRHLRVLALDRAQIDDRIADSIQKMPNLEWLDLNNCDIGDRTLAAASGCS 1035
Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLR-----SLE 402
L LNL QI++ GLA + L + +L L+ ++TD ++L+ + R L+
Sbjct: 1036 RLSYLNLGQTQISNEGLAVIGKLKNIRNLSLWSNQQLTDECVSHLKQLPDYRMKFVLHLQ 1095
Query: 403 ICGGGLTDAGV 413
+ G +T G+
Sbjct: 1096 LDGTQITKNGI 1106
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 119/267 (44%), Gaps = 11/267 (4%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++L TD G+ L +C L+S+ I++ HL L L + R ++ T+
Sbjct: 850 LELGSGPYTDDGVKQLANCVALESISIA-GPSITNDCFTHLVRLPRLRGVGLR-SSQFTS 907
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+ A + +L ++ + ++ +L +L S++ D
Sbjct: 908 GVLATLARIPDLRRMTISTTEQL---TFDLGPFSELRSVDFTGATFGDDLTHALAEKCPR 964
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L+ I S +T++G+A L L+ L +L L+ + DS+ + +L +L+LN C +
Sbjct: 965 LEEASIRNSSITNAGVAALVPLRHLRVLALDRAQIDDRIADSIQKMPNLEWLDLNNCDIG 1024
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS-CGIGDEGLVNLTGLC 300
D S L LNLG +I++E L + L N+ +L+L S + DE + +L L
Sbjct: 1025 DRTLAAASGCSRLSYLNLGQTQISNEGLAVIGKLKNIRNLSLWSNQQLTDECVSHLKQLP 1084
Query: 301 NLKC-----LELSDTQVGSSGLRHLSG 322
+ + L+L TQ+ +G+ L
Sbjct: 1085 DYRMKFVLHLQLDGTQITKNGILELQA 1111
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 82/368 (22%), Positives = 161/368 (43%), Gaps = 41/368 (11%)
Query: 34 QDLCLGQYPGVNDK--WMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
Q++ + ++ ND W+ VI + + +SG ++ L+ ++ S +SLD +
Sbjct: 754 QEIFVREFNSRNDPRYWIQVIVDLSRT---IPISGDEI----LVDIETISRDRSLDLHLK 806
Query: 92 -IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
+ ++ + L ++++L +I + ++A + L + +L+L G+
Sbjct: 807 NVDLTPASVARLGATKHISTLELS-GRSINDELLQAISNL-PIGRLELGSGPYTDDGVKQ 864
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD---SGIAYLKGLQKLT 207
L + LES++I IT+ L L L+ + + S+ T + +A + L+++T
Sbjct: 865 LANCVALESISIA-GPSITNDCFTHLVRLPRLRGVGLRSSQFTSGVLATLARIPDLRRMT 923
Query: 208 LLNLEGCPVTAACLDSLSAL---GSLFYLNL-----NRCQ-----------LSDDGCEKF 248
+ E L ++ G+ F +L +C +++ G
Sbjct: 924 ISTTEQLTFDLGPFSELRSVDFTGATFGDDLTHALAEKCPRLEEASIRNSSITNAGVAAL 983
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
+ L+VL L +I D ++ + NLE L+L++C IGD L +G L L L
Sbjct: 984 VPLRHLRVLALDRAQIDDRIADSIQKMPNLEWLDLNNCDIGDRTLAAASGCSRLSYLNLG 1043
Query: 309 DTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLK-----SLNLDARQITD 362
TQ+ + GL + L N+ +++L S ++D + L L + L LD QIT
Sbjct: 1044 QTQISNEGLAVIGKLKNIRNLSLWSNQQLTDECVSHLKQLPDYRMKFVLHLQLDGTQITK 1103
Query: 363 TGLAALTS 370
G+ L +
Sbjct: 1104 NGILELQA 1111
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 108/252 (42%), Gaps = 31/252 (12%)
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
E S+ SL L+L ++T + L ++ +L L I DE L ++ L + L
Sbjct: 793 ETISRDRSLD-LHLKNVDLTPASVARLGATKHISTLELSGRSINDELLQAISNL-PIGRL 850
Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
EL G++ L+ LESI+++ I++ L L L+ + L + Q T L
Sbjct: 851 ELGSGPYTDDGVKQLANCVALESISIAGPSITNDCFTHLVRLPRLRGVGLRSSQFTSGVL 910
Query: 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
A L + L + + T+ L F LRS++ G D DL+
Sbjct: 911 ATLARIPDLRRMTI---STTEQLTFDLGPFSELRSVDFTGATFGD-------DLTH---- 956
Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 485
L++ C ++ ++ NS IT+AG+ L PL++LR L L+ ++
Sbjct: 957 ALAEKCPRLEEA-------------SIRNSSITNAGVAALVPLRHLRVLALDRAQIDDRI 1003
Query: 486 IKRLQSRDLPNL 497
+Q +PNL
Sbjct: 1004 ADSIQK--MPNL 1013
>gi|242004502|ref|XP_002423122.1| fbxl14, putative [Pediculus humanus corporis]
gi|212506068|gb|EEB10384.1| fbxl14, putative [Pediculus humanus corporis]
Length = 461
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 162/321 (50%), Gaps = 52/321 (16%)
Query: 61 SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRN 116
S++LSG +VTD GL H + L L+ + C Q++D L + + L+NL L
Sbjct: 161 SLNLSGCYNVTDIGLSHAFVTTLPTLTELNLSLCKQVTDTSLGRIAQYLTNLEVLELGGC 220
Query: 117 NAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGL--------MKLESLNIKWCN 166
+T G+ GL L +L+L C I G+ +L G LE L ++ C
Sbjct: 221 CNVTNTGLLLVGWGLKKLKRLNLRSCWHISDQGISHLAGPNPDVGDGNPALEYLGLQDCQ 280
Query: 167 CITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
++D ++ +S GLT LKS+ +S C +TDSG+ YL + L LNL C D++
Sbjct: 281 RLSDEALRHVSVGLTGLKSINLSFCVSITDSGLKYLAKMTSLRELNLRAC-------DNI 333
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLN 282
S LG + L++ G S+I SL V F ++I D+ L+H+ +GL +L+SL+
Sbjct: 334 SDLGMAY--------LAEGG----SRISSLDV---SFCDKIGDQALLHVSQGLFHLKSLS 378
Query: 283 LDSCGIGDEGLV-------NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFT 334
L++C I D+G+V +L L +C +++D V + + L +L I+L +
Sbjct: 379 LNACNISDDGIVRIAITLHDLETLNIGQCWKITDRGVHTI----VDSLKHLRCIDLYGCS 434
Query: 335 GISDGSLRKLAGLSSLKSLNL 355
I+ L ++ L L +LNL
Sbjct: 435 KITTVGLERIMKLPQLTTLNL 455
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 103/349 (29%), Positives = 167/349 (47%), Gaps = 69/349 (19%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKL 206
++G+ L+SLN+ C +TD + ++ L L L +S C +VTD+ + + + L L
Sbjct: 153 VQGIPNLDSLNLSGCYNVTDIGLSHAFVTTLPTLTELNLSLCKQVTDTSLGRIAQYLTNL 212
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
+L L GC C +++ G +L +G+
Sbjct: 213 EVLELGGC-----------------------CNVTNTG-----------LLLVGW----- 233
Query: 267 ECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGL--------CNLKCLELSDTQ-VGSSG 316
GL L+ LNL SC I D+G+ +L G L+ L L D Q +
Sbjct: 234 -------GLKKLKRLNLRSCWHISDQGISHLAGPNPDVGDGNPALEYLGLQDCQRLSDEA 286
Query: 317 LRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS-LT 372
LRH+S GLT L+SINLSF I+D L+ LA ++SL+ LNL A I+D G+A L +
Sbjct: 287 LRHVSVGLTGLKSINLSFCVSITDSGLKYLAKMTSLRELNLRACDNISDLGMAYLAEGGS 346
Query: 373 GLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHIK-DLSSLTLLNLSQ 429
++ LD+ F +I D ++ + +L+SL + ++D G+ I L L LN+ Q
Sbjct: 347 RISSLDVSFCDKIGDQALLHVSQGLFHLKSLSLNACNISDDGIVRIAITLHDLETLNIGQ 406
Query: 430 NCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 476
+TD+ + ++ L L +++ S+IT+ GL + L L +L L
Sbjct: 407 CWKITDRGVHTIVDSLKHLRCIDLYGCSKITTVGLERIMKLPQLTTLNL 455
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 122/249 (48%), Gaps = 40/249 (16%)
Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 322
++G+ NL+SLNL C G+ + L L L C +++DT +G R
Sbjct: 153 VQGIPNLDSLNLSGCYNVTDIGLSHAFVTTLPTLTELNLSLCKQVTDTSLG----RIAQY 208
Query: 323 LTNLESI------NLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT--- 372
LTNLE + N++ TG+ L GL LK LNL + I+D G++ L
Sbjct: 209 LTNLEVLELGGCCNVTNTGL----LLVGWGLKKLKRLNLRSCWHISDQGISHLAGPNPDV 264
Query: 373 --GLTHLDLFG----ARITDSGAAYLR-NFKNLRS--LEICGGGLTDAGVKHIKDLSSLT 423
G L+ G R++D ++ L+S L C +TD+G+K++ ++SL
Sbjct: 265 GDGNPALEYLGLQDCQRLSDEALRHVSVGLTGLKSINLSFCVS-ITDSGLKYLAKMTSLR 323
Query: 424 LLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCK 480
LNL N++D + L G + + SL+VS +I L H+ + L +L+SL+L +C
Sbjct: 324 ELNLRACDNISDLGMAYLAEGGSRISSLDVSFCDKIGDQALLHVSQGLFHLKSLSLNACN 383
Query: 481 VTANDIKRL 489
++ + I R+
Sbjct: 384 ISDDGIVRI 392
>gi|343423407|emb|CCD18182.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
Length = 518
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 106/413 (25%), Positives = 187/413 (45%), Gaps = 37/413 (8%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
G+S+L ++ +AI G F + L L L R L +L L LN+
Sbjct: 107 GMSSLEEVALHNASAIVHIG--RFGRMPCLRVLTLHRVGVTDDFLCSLTTSGSLTHLNLT 164
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
C+ +TD ++PL+ + L+ + +S S G+ L L +L LNL+ VT CL +
Sbjct: 165 ECSRLTD--VEPLASIKTLEQVNLSGSFPGVRGLGALGSLPRLRELNLKHTAVTDDCLKT 222
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-----------GF----------- 261
LSA +L L L C+ D KI SL+V++L GF
Sbjct: 223 LSASKTLVRLFLGDCRRLTD-VTPLVKISSLQVVDLSDCSGITKGMGGFGTLPGLYLLSL 281
Query: 262 --NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
+TDE L L +LESL++ C + D G++ + L+ L++S+ + G
Sbjct: 282 TGTALTDEQLQELCASQSLESLSIKRCKLLTDVGVLGF--VTTLRELDMSECDGVARGFC 339
Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHL 377
S L L S+ ++FT +++ L ++A + L L++ +++TD ++ L + L L
Sbjct: 340 SFSALRELRSLYMTFTRVTNECLCEIAKCTQLVKLSVAGCKKLTD--ISCLAQVHTLEDL 397
Query: 378 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
++ D G L + LR+L + + + ++ + +L L +TD
Sbjct: 398 NVNMCEHIDDGLGVLGGLEELRTLRMSSTAVGNDELRLVCKSKTLERSELEGCERITD-- 455
Query: 438 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 490
+ ++ L+ LN+ + G+ L L LR ++L+ VT +D+K L+
Sbjct: 456 VSALAAAQSLMFLNLDKCQKVVTGVGELGKLPALRVISLQGATVTEDDMKSLK 508
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 160/378 (42%), Gaps = 62/378 (16%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISD----------------GGLEHLRGLSNLTSLS 112
VTD L L +L L+ C +++D G +RGL L SL
Sbjct: 144 VTDDFLCSLTTSGSLTHLNLTECSRLTDVEPLASIKTLEQVNLSGSFPGVRGLGALGSLP 203
Query: 113 FRR-----NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI---KW 164
R + A+T +K + LV+L L C R L ++ L+K+ SL +
Sbjct: 204 RLRELNLKHTAVTDDCLKTLSASKTLVRLFLGDCRR----LTDVTPLVKISSLQVVDLSD 259
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
C+ IT M L L L ++ + +TD + L Q L L+++ C + L +
Sbjct: 260 CSGITKG-MGGFGTLPGLYLLSLTGTALTDEQLQELCASQSLESLSIKRCKL----LTDV 314
Query: 225 SALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL--------- 272
LG +L L+++ C G FS + L+ L + F +T+ECL +
Sbjct: 315 GVLGFVTTLRELDMSECDGVARGFCSFSALRELRSLYMTFTRVTNECLCEIAKCTQLVKL 374
Query: 273 -----KGLTN---------LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
K LT+ LE LN++ C D+GL L GL L+ L +S T VG+ LR
Sbjct: 375 SVAGCKKLTDISCLAQVHTLEDLNVNMCEHIDDGLGVLGGLEELRTLRMSSTAVGNDELR 434
Query: 319 HLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
+ LE L I+D S LA SL LNLD Q TG+ L L L +
Sbjct: 435 LVCKSKTLERSELEGCERITDVS--ALAAAQSLMFLNLDKCQKVVTGVGELGKLPALRVI 492
Query: 378 DLFGARITDSGAAYLRNF 395
L GA +T+ L+ +
Sbjct: 493 SLQGATVTEDDMKSLKMY 510
>gi|157866007|ref|XP_001681710.1| putative surface antigen protein [Leishmania major strain Friedlin]
gi|68125008|emb|CAJ02922.1| putative surface antigen protein [Leishmania major strain Friedlin]
Length = 760
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 120/253 (47%), Gaps = 1/253 (0%)
Query: 176 LSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
S +T+L L+I + +T + A ++ L LNLEG V+ S + SL L
Sbjct: 201 WSRVTSLLELEIVAAGDITGTLPAKWSSIKSLRTLNLEGTQVSGTLPSGWSEMKSLTSLE 260
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
L Q+S +S I SL+ LNL +++ + +L +LNL+ +
Sbjct: 261 LEGTQVSGTLPPGWSSIKSLRTLNLEGTQVSGSLPPQWVSMASLRTLNLEGTQVSGTLPP 320
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
+ + +L LEL TQV + S + +L ++NL T +S + ++SL++LN
Sbjct: 321 GWSEMKSLTSLELEGTQVSGTLPLGWSEMKSLRTLNLEGTQVSGSLPPQWVSMASLRTLN 380
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
L+ Q++ T + + LT+L L G +++ S R K+L +L + G ++ +
Sbjct: 381 LEGTQVSGTLPPGWSEMKSLTNLYLEGTQLSGSLPTEWRGIKSLTNLYLKGTQVSGSLPP 440
Query: 415 HIKDLSSLTLLNL 427
L+SL L+L
Sbjct: 441 QWSSLTSLRTLDL 453
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 88/388 (22%), Positives = 170/388 (43%), Gaps = 14/388 (3%)
Query: 6 ISQQIF---NELVYSRCLTEVSLEA-FRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
+S +F N Y+ L E+ + +R ++DL P ++ D + G LLS
Sbjct: 78 VSVDVFVGLNVSTYAGTLPEIPVNVDYRHVMIRDLGFWNMPLLSGTLPDSWSKLGG-LLS 136
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR---NNA 118
V SG V+ + L++L C ++ L N L R+ +
Sbjct: 137 VTFSGCGVSGTLPASWGLMVRLRALTVGNCRHLTGSLPSEWSWLPNFQILVLRQLQLSGT 196
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+ A+ ++ + +L++L++ I G L + L +LN++ ++ + S
Sbjct: 197 LPAE----WSRVTSLLELEIVAAGDITGTLPAKWSSIKSLRTLNLE-GTQVSGTLPSGWS 251
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
+ +L SL++ ++V+ + ++ L LNLEG V+ + ++ SL LNL
Sbjct: 252 EMKSLTSLELEGTQVSGTLPPGWSSIKSLRTLNLEGTQVSGSLPPQWVSMASLRTLNLEG 311
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
Q+S +S++ SL L L +++ + + +L +LNL+ +
Sbjct: 312 TQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPLGWSEMKSLRTLNLEGTQVSGSLPPQWV 371
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
+ +L+ L L TQV + S + +L ++ L T +S + G+ SL +L L
Sbjct: 372 SMASLRTLNLEGTQVSGTLPPGWSEMKSLTNLYLEGTQLSGSLPTEWRGIKSLTNLYLKG 431
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARIT 385
Q++ + +SLT L LDL G +++
Sbjct: 432 TQVSGSLPPQWSSLTSLRTLDLEGTQVS 459
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 118/281 (41%), Gaps = 22/281 (7%)
Query: 126 AFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
++ + +L L+LE T++ G L + L +LN++ ++ S + +L++
Sbjct: 249 GWSEMKSLTSLELEG-TQVSGTLPPGWSSIKSLRTLNLE-GTQVSGSLPPQWVSMASLRT 306
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L + ++V+ + ++ LT L LEG V+ S + SL LNL Q+S
Sbjct: 307 LNLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPLGWSEMKSLRTLNLEGTQVSGSL 366
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
++ + SL+ LNL +++ + +L +L L+ + G+ +L
Sbjct: 367 PPQWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTNLYLEGTQLSGSLPTEWRGIKSLTN 426
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
L L TQV S S LT+L +++L T +S + + + S ++L L+
Sbjct: 427 LYLKGTQVSGSLPPQWSSLTSLRTLDLEGTQVSGRLPPEWSRMLSAENLQLE-------- 478
Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
H DL G+ + A LR CG
Sbjct: 479 -----------HCDLSGSLPPEWSAMPRLRLVGLRGNRFCG 508
Score = 45.1 bits (105), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 66/305 (21%), Positives = 135/305 (44%), Gaps = 8/305 (2%)
Query: 54 SQGSSLLSVDL-SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
S+ +SLL +++ + D+T + +L++L+ Q+S + +LTSL
Sbjct: 202 SRVTSLLELEIVAAGDITGTLPAKWSSIKSLRTLNLEG-TQVSGTLPSGWSEMKSLTSLE 260
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDS 171
++ ++ + +L L+LE T++ G L + L +LN++
Sbjct: 261 LE-GTQVSGTLPPGWSSIKSLRTLNLEG-TQVSGSLPPQWVSMASLRTLNLE--GTQVSG 316
Query: 172 DMKP-LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ P S + +L SL++ ++V+ + ++ L LNLEG V+ + ++ SL
Sbjct: 317 TLPPGWSEMKSLTSLELEGTQVSGTLPLGWSEMKSLRTLNLEGTQVSGSLPPQWVSMASL 376
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
LNL Q+S +S++ SL L L +++ +G+ +L +L L +
Sbjct: 377 RTLNLEGTQVSGTLPPGWSEMKSLTNLYLEGTQLSGSLPTEWRGIKSLTNLYLKGTQVSG 436
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
+ L +L+ L+L TQV S + + E++ L +S + + + L
Sbjct: 437 SLPPQWSSLTSLRTLDLEGTQVSGRLPPEWSRMLSAENLQLEHCDLSGSLPPEWSAMPRL 496
Query: 351 KSLNL 355
+ + L
Sbjct: 497 RLVGL 501
>gi|290979178|ref|XP_002672311.1| predicted protein [Naegleria gruberi]
gi|284085887|gb|EFC39567.1| predicted protein [Naegleria gruberi]
Length = 347
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 123/261 (47%), Gaps = 5/261 (1%)
Query: 239 QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+L+D+ + F K+ L L + + EI + +V LK LT L ++ SC E + +
Sbjct: 84 KLNDEWFDVFEKMNQLTELQIDWVREIDLKRIVDLKQLTKL---SVCSCTEDVEQVKLIG 140
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
+ L L++S + G G + + G+T L + + I + L L LK L +
Sbjct: 141 EMKQLTELKISSNKFGDEGAKIIGGMTQLTKLEIKSNRIGKLGAKALCNLKELKELRISE 200
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
+ +G +++ L LT L + ++ GA + NL +L IC + AG K I
Sbjct: 201 NALGASGAKSISQLKQLTTLTIDYNQLGPEGAKAISEIPNLTNLSICSDQIGAAGAKSIS 260
Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 477
+ L L+ N + DK + I + L SL++S + I G + + LKNLR L +
Sbjct: 261 KMKQLLTLSADGNA-IGDKGAKAIGEMKQLTSLHLSFNHIGFEGAKAISELKNLRYLNMT 319
Query: 478 SCKVTANDIKRLQSRDLPNLV 498
+ +++ + LQ+ LP L+
Sbjct: 320 TNPLSSEGAQLLQNMKLPKLI 340
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 76/333 (22%), Positives = 143/333 (42%), Gaps = 42/333 (12%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVT---DSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
++ +W++VI + S LS S V + G +H + F +++D +
Sbjct: 39 ISKQWLEVIKQR--SKLSACFSNPKVNRVMEKGFLHY-----FVKIKFKSVYKLNDEWFD 91
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK-LDLERCTRIHGGLVNLKGLMKLES 159
++ LT L I+ V+ +DL+R +V+LK L KL
Sbjct: 92 VFEKMNQLTELQ------------------IDWVREIDLKR-------IVDLKQLTKLSV 126
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
C+C D + L G + L L+IS +K D G + G+ +LT L ++ +
Sbjct: 127 -----CSCTEDVEQVKLIGEMKQLTELKISSNKFGDEGAKIIGGMTQLTKLEIKSNRIGK 181
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
+L L L L ++ L G + S++ L L + +N++ E + + NL
Sbjct: 182 LGAKALCNLKELKELRISENALGASGAKSISQLKQLTTLTIDYNQLGPEGAKAISEIPNL 241
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
+L++ S IG G +++ + L L +G G + + + L S++LSF I
Sbjct: 242 TNLSICSDQIGAAGAKSISKMKQLLTLSADGNAIGDKGAKAIGEMKQLTSLHLSFNHIGF 301
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
+ ++ L +L+ LN+ ++ G L ++
Sbjct: 302 EGAKAISELKNLRYLNMTTNPLSSEGAQLLQNM 334
>gi|283779449|ref|YP_003370204.1| hypothetical protein Psta_1669 [Pirellula staleyi DSM 6068]
gi|283437902|gb|ADB16344.1| hypothetical protein Psta_1669 [Pirellula staleyi DSM 6068]
Length = 633
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 72/138 (52%)
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
L+LG +TD+ L L L+ L+L + D GL L L L L L T + S+
Sbjct: 478 LSLGRTTVTDQGLAQLGQFKRLKWLDLSLTKVTDTGLEQLDQLTQLNQLFLEGTAISSAS 537
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
+ ++ L NLE ++LS I+D L K+A L LK L L +TD GLA L SL L
Sbjct: 538 IPAIARLRNLEELDLSKVNIADDDLAKIATLKQLKVLYLVGTPVTDAGLAKLVSLQNLEM 597
Query: 377 LDLFGARITDSGAAYLRN 394
LDL G R++ A L++
Sbjct: 598 LDLRGTRVSADAAEKLKS 615
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 90/170 (52%), Gaps = 4/170 (2%)
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
+GF +++D+ L+ +L+L + D+GL L LK L+LS T+V +GL
Sbjct: 456 VGFLDVSDQDLLACVSPATTINLSLGRTTVTDQGLAQLGQFKRLKWLDLSLTKVTDTGLE 515
Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
L LT L + L T IS S+ +A L +L+ L+L I D LA + +L L L
Sbjct: 516 QLDQLTQLNQLFLEGTAISSASIPAIARLRNLEELDLSKVNIADDDLAKIATLKQLKVLY 575
Query: 379 LFGARITDSGAAYLRNFKNLRSLEICGGGLT-DAGVK---HIKDLSSLTL 424
L G +TD+G A L + +NL L++ G ++ DA K IK L+++ L
Sbjct: 576 LVGTPVTDAGLAKLVSLQNLEMLDLRGTRVSADAAEKLKSRIKSLANVLL 625
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 66/118 (55%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+TD + L LK L +S +KVTD+G+ L L +L L LEG +++A + +++
Sbjct: 483 TTVTDQGLAQLGQFKRLKWLDLSLTKVTDTGLEQLDQLTQLNQLFLEGTAISSASIPAIA 542
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
L +L L+L++ ++DD K + + LKVL L +TD L L L NLE L+L
Sbjct: 543 RLRNLEELDLSKVNIADDDLAKIATLKQLKVLYLVGTPVTDAGLAKLVSLQNLEMLDL 600
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 80/160 (50%), Gaps = 1/160 (0%)
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
F +SD L ++ +L+L +TD GLA L L LDL ++TD+G L
Sbjct: 458 FLDVSDQDLLACVSPATTINLSLGRTTVTDQGLAQLGQFKRLKWLDLSLTKVTDTGLEQL 517
Query: 393 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
L L + G ++ A + I L +L L+LS+ N+ D L I+ L L L +
Sbjct: 518 DQLTQLNQLFLEGTAISSASIPAIARLRNLEELDLSK-VNIADDDLAKIATLKQLKVLYL 576
Query: 453 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 492
+ +T AGL L L+NL L L +V+A+ ++L+SR
Sbjct: 577 VGTPVTDAGLAKLVSLQNLEMLDLRGTRVSADAAEKLKSR 616
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 27/168 (16%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++ +++ L + VTD GL L L+ LD + +++D GLE L L+ L L F
Sbjct: 473 ATTINLSLGRTTVTDQGLAQLGQFKRLKWLDLSLT-KVTDTGLEQLDQLTQLNQL-FLEG 530
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
AI++ + A A L NL +LDL + VN I D D+ +
Sbjct: 531 TAISSASIPAIARLRNLEELDLSK--------VN-----------------IADDDLAKI 565
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
+ L LK L + + VTD+G+A L LQ L +L+L G V+A + L
Sbjct: 566 ATLKQLKVLYLVGTPVTDAGLAKLVSLQNLEMLDLRGTRVSADAAEKL 613
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 67/138 (48%), Gaps = 2/138 (1%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
VT L L L +L+L+ +++D G E+ ++ L L L I+ + + L
Sbjct: 485 VTDQGLAQLGQFKRLKWLDLSLTKVTDTGLEQLDQLTQLNQLFLEGTAISSASIPAIARL 544
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
NLE L+L I D+ L + L LK L L T V +GL L L NLE ++L T
Sbjct: 545 RNLEELDLSKVNIADDDLAKIATLKQLKVLYLVGTPVTDAGLAKLVSLQNLEMLDLRGTR 604
Query: 336 ISDGSLRKLAGLSSLKSL 353
+S + KL S +KSL
Sbjct: 605 VSADAAEKLK--SRIKSL 620
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 64/129 (49%)
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L+L R ++D G + + LK L+L ++TD L L LT L L L+ I
Sbjct: 478 LSLGRTTVTDQGLAQLGQFKRLKWLDLSLTKVTDTGLEQLDQLTQLNQLFLEGTAISSAS 537
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
+ + L NL+ L+LS + L ++ L L+ + L T ++D L KL L +L+
Sbjct: 538 IPAIARLRNLEELDLSKVNIADDDLAKIATLKQLKVLYLVGTPVTDAGLAKLVSLQNLEM 597
Query: 353 LNLDARQIT 361
L+L +++
Sbjct: 598 LDLRGTRVS 606
>gi|330806226|ref|XP_003291073.1| hypothetical protein DICPUDRAFT_98891 [Dictyostelium purpureum]
gi|325078753|gb|EGC32387.1| hypothetical protein DICPUDRAFT_98891 [Dictyostelium purpureum]
Length = 793
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 101/343 (29%), Positives = 151/343 (44%), Gaps = 69/343 (20%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQ--DLCLGQYPGVNDKWMDVIAS-QGSS 58
LP ++ Q+I + L+ +L FR+C L +LC + P ++D W+++ S+
Sbjct: 294 LPDELCQKIIPLFQRRKILSSRTLSLFRNCKLTRLELCGKEVP-ISDDWLNITKGLMAST 352
Query: 59 LLSVDLS-GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+ V++S S +TD G+ L NLQSLD ++ +I GL L
Sbjct: 353 ITYVNISKNSLLTDQGIASLSHLRNLQSLDISYVDKIDGSGLAAL--------------- 397
Query: 118 AITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
AG + L KL +E C ++ L L L SL CN +TD D +
Sbjct: 398 --------VDAG-VPLQKLQMEGCLSLKLPQLFTTLSKLKTLSSLYAGACN-MTDDDCQQ 447
Query: 176 LSGLTNLKSLQISCSKV-TDSGIAYLKGLQKLTLLNLEGCPVTAA----CLDSLSALGSL 230
LS L L L + + V T+ G+ ++ L +LT L++ G A CL L L SL
Sbjct: 448 LSQLQTLTHLDVCRNAVITNRGLQFICNLSRLTELDIGGINQLDAQGIKCLLQLPHLESL 507
Query: 231 FYLNLNRCQLSDDGC-----------------EKFSKIGSLKVLNLGF---------NEI 264
N C + DD C FS +G+ + NL + I
Sbjct: 508 AAEN---CGI-DDKCMNYIGSLKSLKSLSLINNPFSDVGAKHIGNLIYLTTLDLSMCANI 563
Query: 265 TDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCL 305
TD LVH + L+ + LNL+ CG + D G+ +LT GL LK L
Sbjct: 564 TDATLVHFRNLSQISKLNLNFCGNLTDSGVTSLTGGLSQLKTL 606
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 111/248 (44%), Gaps = 48/248 (19%)
Query: 264 ITDECLVHLKGLTNLESLNL------DSCGIG---DEGLVNLTGLCNLKCLELSDTQVGS 314
+TD+ + L L NL+SL++ D G+ D G V L L CL L Q+ +
Sbjct: 364 LTDQGIASLSHLRNLQSLDISYVDKIDGSGLAALVDAG-VPLQKLQMEGCLSLKLPQLFT 422
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTG 373
+ LS L L S+ ++D ++L+ L +L L++ IT+ GL + +L+
Sbjct: 423 T----LSKLKTLSSLYAGACNMTDDDCQQLSQLQTLTHLDVCRNAVITNRGLQFICNLSR 478
Query: 374 LTHLDLFGARITDS-GAAYLRNFKNLRSL--EICG----------------------GGL 408
LT LD+ G D+ G L +L SL E CG
Sbjct: 479 LTELDIGGINQLDAQGIKCLLQLPHLESLAAENCGIDDKCMNYIGSLKSLKSLSLINNPF 538
Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL------NVSNSRITS--A 460
+D G KHI +L LT L+LS N+TD TL L+ + L N+++S +TS
Sbjct: 539 SDVGAKHIGNLIYLTTLDLSMCANITDATLVHFRNLSQISKLNLNFCGNLTDSGVTSLTG 598
Query: 461 GLRHLKPL 468
GL LK L
Sbjct: 599 GLSQLKTL 606
Score = 38.5 bits (88), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 37 CLGQYP----------GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSL 86
CL Q P G++DK M+ I S S ++ +D G H+ + L +L
Sbjct: 497 CLLQLPHLESLAAENCGIDDKCMNYIGSLKSLKSLSLINNP-FSDVGAKHIGNLIYLTTL 555
Query: 87 DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI 144
D + C I+D L H R LS ++ L+ +T G+ + GL L L + C R+
Sbjct: 556 DLSMCANITDATLVHFRNLSQISKLNLNFCGNLTDSGVTSLTGGLSQLKTLGIIGCNRL 614
>gi|356506506|ref|XP_003522022.1| PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max]
Length = 669
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 144/496 (29%), Positives = 217/496 (43%), Gaps = 96/496 (19%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDS------GLIHLKD------- 79
L+ LCL G+ D +D++A + L ++DLS +T+ L HL+D
Sbjct: 182 LRLLCLKWCVGIGDLGVDLVAIKCKELTTLDLSYLPITEKCLPSIFKLQHLEDLVLEGCF 241
Query: 80 ---------------CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
C L+ LD + C IS H+ GLS LTS+S I A G
Sbjct: 242 GIDDDSLDVDLLKQGCKTLKRLDISGCQNIS-----HV-GLSKLTSISGGLEKLILADGS 295
Query: 125 KAFAGLIN-LVKLDLERCTRIHGGLVNLKGL-------MKLESLNIKWCNCITDSDMKPL 176
L + L KL + + + G V +GL + L L++ C +TD + L
Sbjct: 296 PVTLSLADGLNKLSMLQSIVLDGCPVTSEGLRAIGNLCISLRELSLSKCLGVTDEALSFL 355
Query: 177 -SGLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
S +L+ L I+ C K+TD IA + LT L +E C + + F L
Sbjct: 356 VSKHKDLRKLDITCCRKITDVSIASIANSCTGLTSLKMESCTLVPS---------EAFVL 406
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEG 292
+C L+ L+L NEI DE L+ + + L SL + C I D G
Sbjct: 407 IGQKCHY-------------LEELDLTDNEIDDEGLMSISSCSWLTSLKIGICLNITDRG 453
Query: 293 LVNLTGLCN-LKCLEL-SDTQVGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLS 348
L + C+ LK L+L T V G+ ++ G LE IN S+ T I+D +L L+ S
Sbjct: 454 LAYVGMRCSKLKELDLYRSTGVDDLGISAIAGGCPGLEMINTSYCTSITDRALIALSKCS 513
Query: 349 SLKSLNLDA-RQITDTGLAALT-SLTGLTHLDLFGAR-ITDSGAAYLRNF-KNLRSLEIC 404
+L++L + +T GLAA+ + L+ LD+ I DSG L +F +NLR + +
Sbjct: 514 NLETLEIRGCLLVTSIGLAAIAMNCRQLSRLDIKKCYNIDDSGMIALAHFSQNLRQINLS 573
Query: 405 GGGLTDAG---VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
+TD G + +I L S TLL+L GLV ++ + + G
Sbjct: 574 YSSVTDVGLLSLANISCLQSFTLLHLQ-----------------GLVPGGLAAALLACGG 616
Query: 462 LRHLKPLKNLRSLTLE 477
L +K +LRSL E
Sbjct: 617 LTKVKLHLSLRSLLPE 632
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 110/415 (26%), Positives = 178/415 (42%), Gaps = 81/415 (19%)
Query: 117 NAITAQGMKAFAG-LINLVKLDLERCTRIHGGLVNL----------------------KG 153
+ A+ + A A N+ +LDL C R+ G + L G
Sbjct: 61 RPLRAEHLPALAARYPNVTELDLSLCPRVGDGALGLVAGAYAATLRRMDLSRSRRFTATG 120
Query: 154 LMKLES-------LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLK-GLQ 204
L+ L + L++ + D+ + ++ NL+ L ++ C VTD GI + G +
Sbjct: 121 LLSLGARCEHLVELDLSNATELRDAGVAAVARARNLRKLWLARCKMVTDMGIGCIAVGCR 180
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS-KIGSLKVLNLGFNE 263
KL LL L+ C + D G + + K L L+L +
Sbjct: 181 KLRLLCLKWC-----------------------VGIGDLGVDLVAIKCKELTTLDLSYLP 217
Query: 264 ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT---GLCNLKCLELSDTQVGSSGLRH 319
IT++CL + L +LE L L+ C GI D+ L G LK L++S G + H
Sbjct: 218 ITEKCLPSIFKLQHLEDLVLEGCFGIDDDSLDVDLLKQGCKTLKRLDIS----GCQNISH 273
Query: 320 LSGLTNLESIN--LSFTGISDGSLRKLA------GLSSLKSLNLDARQITDTGLAALTSL 371
+ GL+ L SI+ L ++DGS L+ LS L+S+ LD +T GL A+ +L
Sbjct: 274 V-GLSKLTSISGGLEKLILADGSPVTLSLADGLNKLSMLQSIVLDGCPVTSEGLRAIGNL 332
Query: 372 -TGLTHLDLFGAR-ITDSGAAYL-RNFKNLRSLEI-CGGGLTDAGVKHIKD-LSSLTLLN 426
L L L +TD ++L K+LR L+I C +TD + I + + LT L
Sbjct: 333 CISLRELSLSKCLGVTDEALSFLVSKHKDLRKLDITCCRKITDVSIASIANSCTGLTSLK 392
Query: 427 LSQNCNLTDKTLELISGLT--GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 479
+ ++C L ++ G L L+++++ I GL + L SL + C
Sbjct: 393 M-ESCTLVPSEAFVLIGQKCHYLEELDLTDNEIDDEGLMSISSCSWLTSLKIGIC 446
>gi|440802726|gb|ELR23655.1| leucine rich repeat domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 634
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 181/376 (48%), Gaps = 72/376 (19%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSL-----SFRRNNAITAQGMKAFAGLINLVK 135
LQ+L+ ++C I++ GL++LRGL++LTSL SFR +T++G+K+ +L
Sbjct: 280 PQLQTLNLSYCPNITNHGLKYLRGLTSLTSLDLCSPSFR----VTSEGLKSLPS--SLRS 333
Query: 136 LDLERCTRI-HGGLVNLKGL-MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKV 192
LD+ ++ G+ L+ + L+ LNI CN +T+ M+ L L+++ +S C +
Sbjct: 334 LDISYMDKLTDEGIKALRAVCPDLQVLNISKCNKVTNDGMRFLPA--KLRTIFLSHCYNI 391
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
TD GIA L V L++ + + L+DDG +
Sbjct: 392 TDEGIANLA--------------VAVPLLEN---------FHFSYSSLTDDGVRHLPR-- 426
Query: 253 SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-T 310
+LK LNL F ++T+E + HL + L+ S I DEGL L ++ L+LS
Sbjct: 427 ALKALNLSFCPKLTNEGMRHLPPHLHTLLLSY-SYKITDEGLRALPP--SIATLKLSRFF 483
Query: 311 QVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAAL 368
++ GL+HL L S++LS +SD + +L +L LNL ITD G+A L
Sbjct: 484 EITDDGLQHLP--PALRSLDLSLCDRVSDQGMSRLP--PTLAELNLSRCDGITDAGVAQL 539
Query: 369 TSLTGLTHLDL-FGARITDSGAAYLRNF-KNLRSL------EICGGGLTDAGVKHIKDLS 420
L LDL F +TD A LR+ K L SL EI G L D +
Sbjct: 540 PR--SLGKLDLSFTKHVTD---ACLRSLPKALTSLNLSSCPEITGEALADLPL------- 587
Query: 421 SLTLLNLSQNCNLTDK 436
SL+ L LS +TDK
Sbjct: 588 SLSHLFLSHCEKVTDK 603
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 98/334 (29%), Positives = 159/334 (47%), Gaps = 48/334 (14%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS---KVTDSGIAYLKGLQKLTLLNLE 212
+L++LN+ +C IT+ +K L GLT+L SL + CS +VT G L+
Sbjct: 281 QLQTLNLSYCPNITNHGLKYLRGLTSLTSLDL-CSPSFRVTSEG--------------LK 325
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI-GSLKVLNLGF-NEITDECLV 270
P + LD + Y++ +L+D+G + + L+VLN+ N++T++ +
Sbjct: 326 SLPSSLRSLD-------ISYMD----KLTDEGIKALRAVCPDLQVLNISKCNKVTNDGMR 374
Query: 271 HLKGLTNLESLNLDSC-GIGDEGLVNL-TGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
L L ++ L C I DEG+ NL + L+ S + + G+RHL L++
Sbjct: 375 FLPA--KLRTIFLSHCYNITDEGIANLAVAVPLLENFHFSYSSLTDDGVRHLP--RALKA 430
Query: 329 INLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
+NLSF +++ +R L L+ + +ITD GL AL L F ITD
Sbjct: 431 LNLSFCPKLTNEGMRHLPPHLHTLLLSY-SYKITDEGLRALPPSIATLKLSRF-FEITDD 488
Query: 388 GAAYLRNFKNLRSLEIC-GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 446
G +L LRSL++ ++D G+ + +L LNLS+ +TD + + G
Sbjct: 489 GLQHLP--PALRSLDLSLCDRVSDQGMSRLP--PTLAELNLSRCDGITDAGVAQLPRSLG 544
Query: 447 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
+ L+ + +T A LR L K L SL L SC
Sbjct: 545 KLDLSFTK-HVTDACLRSLP--KALTSLNLSSCP 575
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 134/274 (48%), Gaps = 24/274 (8%)
Query: 28 FRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLD 87
F L+ + L + D+ + +A L + S S +TD G+ HL L++L+
Sbjct: 375 FLPAKLRTIFLSHCYNITDEGIANLAVAVPLLENFHFSYSSLTDDGVRHLPRA--LKALN 432
Query: 88 FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HG 146
+FC ++++ G+ HL + LS+ + IT +G++A I +K L R I
Sbjct: 433 LSFCPKLTNEGMRHLPPHLHTLLLSY--SYKITDEGLRALPPSIATLK--LSRFFEITDD 488
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL-KGLQ 204
GL +L L SL++ C+ ++D M L L L +S C +TD+G+A L + L
Sbjct: 489 GLQHLPP--ALRSLDLSLCDRVSDQGMSRLP--PTLAELNLSRCDGITDAGVAQLPRSLG 544
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG-SLKVLNLGFNE 263
KL L + VT ACL SL +L LNL+ C + E + + SL L L E
Sbjct: 545 KLDLSFTKH--VTDACLRSLPK--ALTSLNLSSC--PEITGEALADLPLSLSHLFLSHCE 598
Query: 264 -ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVN 295
+TD+ L LE+L++ SC G+ ++ L++
Sbjct: 599 KVTDKIFTSLP--RPLETLDISSCSGVVEKYLLD 630
>gi|261331192|emb|CBH14182.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
gambiense DAL972]
Length = 490
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 121/457 (26%), Positives = 197/457 (43%), Gaps = 53/457 (11%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
V L L+ C+++Q+L F +D L + L +L LS A ++ F
Sbjct: 48 VERESLRFLRLCTSIQTLRFEGEYPFAD--LSPIPELRSLGELSIEE-----APKLENFV 100
Query: 129 GLINLVKLDLERCTR--IHGG-LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
G+ NL +L I GG L L L L + C + D+ PL+ +T L+ L
Sbjct: 101 GIKNLPQLKALEVAEAPIRGGCLQTLTAGCNLVKLCLDSCPYL--KDVSPLAEMTALEHL 158
Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEG--------------------CPVTAACLDS-- 223
I ++GI L L L L L G C V+ CL
Sbjct: 159 AICKCVGIETGIGSLGKLPALRELYLIGTSMRGNSLRGLGATTSLLNLCIVSCGCLTDVL 218
Query: 224 -LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN---LE 279
++ + L L L C ++G K + +L L+L ++ I D V L+GL++ L
Sbjct: 219 HIADVQVLRQLTLESCTSLEEGVGKLGGLPALYELDLSYSSIVD---VFLQGLSSSRSLV 275
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLE---LSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
LNL C + L +++ L LK L+ L + +G+ L L L ++LS T I
Sbjct: 276 KLNLSWC----DQLTDVSPLAELKTLKYLNLQSCEAVVAGIGDLGKLPGLYELDLSCTPI 331
Query: 337 SDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
+D +LR L SL L++ + +TD L+AL SL L L+L G +
Sbjct: 332 TDCALRDLCSSRSLVRLDISSCDNLTD--LSALVSLKTLGELNLDACTEVKQGIGNISQL 389
Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 455
LR L+ +TD ++ + SL +L L ++TD + ++ + L +++++
Sbjct: 390 PELRRLDGTCLPITDDSLRDLSASRSLVVLCLDTCMDITD--VSCLAAVKTLEEISLNSC 447
Query: 456 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 492
G+ L L LRS+ L K+ + + LQ+R
Sbjct: 448 LSVEKGVEALTTLPRLRSVNLRGVKIDSEVLSELQAR 484
>gi|124004058|ref|ZP_01688905.1| Rab family protein [Microscilla marina ATCC 23134]
gi|123990637|gb|EAY30117.1| Rab family protein [Microscilla marina ATCC 23134]
Length = 1165
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 107/353 (30%), Positives = 170/353 (48%), Gaps = 55/353 (15%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
D+ PL LT L L + +K++D + + L+GL KL L N + L L +L SL
Sbjct: 194 DLAPLQHLTCLTMLSLHHNKISDLAPLQKLRGLLKLDLSNNQ-----LDDLHPLKSLNSL 248
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L L Q+SD + SL+++ L N +TD L L+ L NL+SL+L + I D
Sbjct: 249 QSLVLRNNQISD--LTPLQALHSLQLIVLRDNPVTD--LTPLQSLRNLQSLDLRNNQISD 304
Query: 291 EGLVNLTGLCNLKCLELSDTQVGS--------------------SGLRHLSGLTNLESIN 330
L L L +L+ ++L + + L L L NLESI+
Sbjct: 305 --LTPLQNLSSLQSIDLRHNPINDLLPLQNLPNLQSIDLKYNHINDLAPLQNLPNLESID 362
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
LS ISD L L LS+L+S++L Q+ LA+L L L +DL +I D A
Sbjct: 363 LSDNQISD--LTPLQNLSNLQSIDLSNNQVN--HLASLQYLPNLESIDLSDNQIND--LA 416
Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT---LELISGLTGL 447
L+N +L+S+++ I DL+ L L ++ +L+D L + L L
Sbjct: 417 PLQNLGDLQSIDLSNN--------QIHDLTPLQNLPNLESIDLSDNQISDLTPLQNLGSL 468
Query: 448 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 500
S+N+ N++++ L L+ L +L+++ L +++ D+ LQ LP+L S
Sbjct: 469 QSINLRNNQVSD--LSPLQALHDLQAINLSDNQIS--DLAPLQK--LPHLKSI 515
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 107/374 (28%), Positives = 170/374 (45%), Gaps = 62/374 (16%)
Query: 97 GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 156
G L L+ L+ LT LS N ++ GL+ KLDL L LK L
Sbjct: 193 GDLAPLQHLTCLTMLSLHHNKISDLAPLQKLRGLL---KLDLSNNQL--DDLHPLKSLNS 247
Query: 157 LESLNIKWCNCITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSG 196
L+SL ++ N I+D +D+ PL L NL+SL + ++++D
Sbjct: 248 LQSLVLR-NNQISDLTPLQALHSLQLIVLRDNPVTDLTPLQSLRNLQSLDLRNNQISD-- 304
Query: 197 IAYLKGLQKLTLLNLEGCPVTAAC--------------------LDSLSALGSLFYLNLN 236
+ L+ L L ++L P+ L L L +L ++L+
Sbjct: 305 LTPLQNLSSLQSIDLRHNPINDLLPLQNLPNLQSIDLKYNHINDLAPLQNLPNLESIDLS 364
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
Q+SD + +L+ ++L N++ L L+ L NLES++L I D L L
Sbjct: 365 DNQISD--LTPLQNLSNLQSIDLSNNQVN--HLASLQYLPNLESIDLSDNQIND--LAPL 418
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
L +L+ ++LS+ Q+ L L L NLESI+LS ISD L L L SL+S+NL
Sbjct: 419 QNLGDLQSIDLSNNQI--HDLTPLQNLPNLESIDLSDNQISD--LTPLQNLGSLQSINLR 474
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
Q++D L+ L +L L ++L +I+D A L+ +L+S+++ + I
Sbjct: 475 NNQVSD--LSPLQALHDLQAINLSDNQISD--LAPLQKLPHLKSIDLRDNQIEVFPEHLI 530
Query: 417 KDLSSLTLLNLSQN 430
+ LT L+L N
Sbjct: 531 TNCPQLTSLHLYHN 544
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 110/349 (31%), Positives = 169/349 (48%), Gaps = 45/349 (12%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTA----------- 218
SD+KPL L NL+ L +S ++V D + + L GLQ + L + +T
Sbjct: 127 SDLKPLQNLANLQMLDMSDNRVADLTPLQNLPGLQSIVLSKNKVRDLTPLQHLTGLHTLL 186
Query: 219 ------ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
L L L L L+L+ ++SD K+ L L+L N++ D L L
Sbjct: 187 LHYNKIGDLAPLQHLTCLTMLSLHHNKISD--LAPLQKLRGLLKLDLSNNQLDD--LHPL 242
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
K L +L+SL L + I D L L L +L+ + L D V + L L L NL+S++L
Sbjct: 243 KSLNSLQSLVLRNNQISD--LTPLQALHSLQLIVLRDNPV--TDLTPLQSLRNLQSLDLR 298
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
ISD L L LSSL+S++L I D L +L L +DL I D A L
Sbjct: 299 NNQISD--LTPLQNLSSLQSIDLRHNPINDL--LPLQNLPNLQSIDLKYNHIND--LAPL 352
Query: 393 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452
+N NL S+++ ++D + +++LS+L ++LS N L + L L S+++
Sbjct: 353 QNLPNLESIDLSDNQISD--LTPLQNLSNLQSIDLSNN---QVNHLASLQYLPNLESIDL 407
Query: 453 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNLVSF 500
S+++I L PL+NL L+S ++ N I L ++LPNL S
Sbjct: 408 SDNQIND-----LAPLQNLGD--LQSIDLSNNQIHDLTPLQNLPNLESI 449
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 125/295 (42%), Gaps = 73/295 (24%)
Query: 57 SSLLSVDLSGSDVTDSGLI--------------HLKDCSNLQSLDFNFCIQISDGGLEHL 102
SSL S+DL + + D + H+ D + LQ+L I +SD + L
Sbjct: 312 SSLQSIDLRHNPINDLLPLQNLPNLQSIDLKYNHINDLAPLQNLPNLESIDLSDNQISDL 371
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L NL+ NL +DL H L +L+ L LES+++
Sbjct: 372 TPLQNLS----------------------NLQSIDLSNNQVNH--LASLQYLPNLESIDL 407
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
N I +D+ PL L +L+S+ +S +++ D L LQ L NLE ++ +
Sbjct: 408 S-DNQI--NDLAPLQNLGDLQSIDLSNNQIHD-----LTPLQNLP--NLESIDLSDNQIS 457
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
L+ L +L GSL+ +NL N+++D L L+ L +L+++N
Sbjct: 458 DLTPLQNL---------------------GSLQSINLRNNQVSD--LSPLQALHDLQAIN 494
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L I D L L L +LK ++L D Q+ ++ L S++L I
Sbjct: 495 LSDNQISD--LAPLQKLPHLKSIDLRDNQIEVFPEHLITNCPQLTSLHLYHNPIQ 547
>gi|374293090|ref|YP_005040125.1| hypothetical protein AZOLI_2723 [Azospirillum lipoferum 4B]
gi|357425029|emb|CBS87910.1| Conserved protein of unknown function; Leucine-rich repeat domain
[Azospirillum lipoferum 4B]
Length = 1026
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 159/329 (48%), Gaps = 35/329 (10%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
L L GL L+ L+ C+ + SD+ PLSGL++L+ Q+SCS + S ++ L GL L
Sbjct: 33 LSPLNGLRGLQQLD---CSLTSVSDLSPLSGLSDLQ--QLSCSSTSVSDLSPLSGLSGLQ 87
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L+ V+ L LS L L L+ + +SD S + L+ L+ ++D
Sbjct: 88 QLDCSSTSVSD--LFPLSGLSGLQQLSCSSTSVSD--LFPLSGLSGLQELSCSGTSVSD- 142
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
L L GL L+ L+ + D L L+GL L+ L S T V S L LSGL+ L+
Sbjct: 143 -LSPLSGLNGLQQLDCSLTSVSD--LSPLSGLSGLQELSCSGTSV--SDLSPLSGLSGLQ 197
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
++ S T +SD L L+GLS L+ L ++D L+ L+ L+GL L G + D
Sbjct: 198 ELSCSGTSVSD--LSPLSGLSGLQQLYCSGTSVSD--LSPLSGLSGLQQLSCSGTSVND- 252
Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
+ L L+ L C V + DLS L+ L+ Q + +D ++ + L+GL
Sbjct: 253 -LSPLSGLSGLQQL-YCS-------VTSVSDLSPLSGLSGLQELSCSDTSVSDLFPLSGL 303
Query: 448 VSL------NVSNSRITSAGLRHLKPLKN 470
SL NV I +AG+ +P N
Sbjct: 304 SSLQELYLYNVEIPGIPTAGVLSQEPDDN 332
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 108/331 (32%), Positives = 159/331 (48%), Gaps = 35/331 (10%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL ++ SG+ V+D L L LQ LD C S L L GLS+L LS +
Sbjct: 19 SLQQLNCSGTSVSD--LSPLNGLRGLQQLD---CSLTSVSDLSPLSGLSDLQQLSC---S 70
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ + + +GL L +LD C+ L L GL L+ L+ C+ + SD+ PL
Sbjct: 71 STSVSDLSPLSGLSGLQQLD---CSSTSVSDLFPLSGLSGLQQLS---CSSTSVSDLFPL 124
Query: 177 SGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAAC-LDSLSALGSLFYLN 234
SGL+ L+ L S + V+D S ++ L GLQ+L C +T+ L LS L L L+
Sbjct: 125 SGLSGLQELSCSGTSVSDLSPLSGLNGLQQLD------CSLTSVSDLSPLSGLSGLQELS 178
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
+ +SD S + L+ L+ ++D L L GL+ L+ L + D L
Sbjct: 179 CSGTSVSD--LSPLSGLSGLQELSCSGTSVSD--LSPLSGLSGLQQLYCSGTSVSD--LS 232
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
L+GL L+ L S T V L LSGL+ L+ + S T +SD L L+GLS L+ L+
Sbjct: 233 PLSGLSGLQQLSCSGTSVND--LSPLSGLSGLQQLYCSVTSVSD--LSPLSGLSGLQELS 288
Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARIT 385
++D L L+ L+ L L L+ I
Sbjct: 289 CSDTSVSD--LFPLSGLSSLQELYLYNVEIP 317
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 138/308 (44%), Gaps = 49/308 (15%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS S + S L L S LQ LD C S L L GLS L LS ++ +
Sbjct: 67 LSCSSTSVSDLSPLSGLSGLQQLD---CSSTSVSDLFPLSGLSGLQQLSC---SSTSVSD 120
Query: 124 MKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
+ +GL L +L C+ L L GL L+ L+ C+ + SD+ PLSGL+ L
Sbjct: 121 LFPLSGLSGLQELS---CSGTSVSDLSPLSGLNGLQQLD---CSLTSVSDLSPLSGLSGL 174
Query: 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
+ ++SCS + S ++ L GL L L+ G V+ L LS L L L + +SD
Sbjct: 175 Q--ELSCSGTSVSDLSPLSGLSGLQELSCSGTSVSD--LSPLSGLSGLQQLYCSGTSVSD 230
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
L L GL+ L+ L+ + D L L+GL L
Sbjct: 231 --------------------------LSPLSGLSGLQQLSCSGTSVND--LSPLSGLSGL 262
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
+ L S T V S L LSGL+ L+ ++ S T +SD L L+GLSSL+ L L +I
Sbjct: 263 QQLYCSVTSV--SDLSPLSGLSGLQELSCSDTSVSD--LFPLSGLSSLQELYLYNVEIPG 318
Query: 363 TGLAALTS 370
A + S
Sbjct: 319 IPTAGVLS 326
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 81/182 (44%), Gaps = 26/182 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L + SG+ V+D L L S LQ L C S L L GLS L L
Sbjct: 172 SGLQELSCSGTSVSD--LSPLSGLSGLQELS---CSGTSVSDLSPLSGLSGLQQLYC--- 223
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-LKGLMKLESLNIKWCNCITDSDMKP 175
+ + + +GL L +L C+ G VN L L L L +C+ + SD+ P
Sbjct: 224 SGTSVSDLSPLSGLSGLQQLS---CS---GTSVNDLSPLSGLSGLQQLYCSVTSVSDLSP 277
Query: 176 LSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLE--GCPVTAA--------CLDSL 224
LSGL+ L+ L S + V+D ++ L LQ+L L N+E G P CLD L
Sbjct: 278 LSGLSGLQELSCSDTSVSDLFPLSGLSSLQELYLYNVEIPGIPTAGVLSQEPDDNCLDRL 337
Query: 225 SA 226
A
Sbjct: 338 RA 339
>gi|397630643|gb|EJK69852.1| hypothetical protein THAOC_08850 [Thalassiosira oceanica]
Length = 859
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 97/319 (30%), Positives = 144/319 (45%), Gaps = 58/319 (18%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP----LSGLTNLKSLQISCSKVTDSG---IAYLKGL 203
L+ + L S+ + N ITDS+M+ L +T L + CS +TD G I L+ L
Sbjct: 158 LEDIADLHSIEVSLPNSITDSEMEHAILYLQLVTRLNC--VGCSYLTDKGFKLIGRLREL 215
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
Q+L L+ L SL+ LG+L D +K S G L +
Sbjct: 216 QELYFLH-------NKQLTSLTFLGNL------------DRLKKLSVDGMLNSRGKSTPQ 256
Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
+TDE L G+ E +L IG D +V GL HL+ +
Sbjct: 257 VTDETL----GIIAGEMHSLRELIIG------------------VDMEVSGIGLVHLAEM 294
Query: 324 TNLESINL---SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL 379
LES++L + GI+D L+ L L L+SL + ++D L L L + L+L
Sbjct: 295 GRLESLSLERGAGEGITDNGLKVLCSLGRLRSLRITHCAYLSDRSLNYLQHLHRIEKLEL 354
Query: 380 F---GARITDSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
+ TD GA L KNL+ L + G LTD GV ++ +S+L LNL ++TD
Sbjct: 355 SCVDDSSFTDEGARQLSKLKNLKELSLVGWERLTDRGVYYLSKISTLECLNLRYCPSITD 414
Query: 436 KTLELISGLTGLVSLNVSN 454
++LE + L GL L +S+
Sbjct: 415 ESLEHLRYLKGLRKLELSD 433
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 91/336 (27%), Positives = 150/336 (44%), Gaps = 101/336 (30%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSD--VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
+ D +D+ S+G LS SD +T S L L+D ++L S++ + I+D +EH
Sbjct: 129 MTDNELDIFISKGY------LSRSDKKLTVSYLELLEDIADLHSIEVSLPNSITDSEMEH 182
Query: 102 -----------------------------LRGLS--------NLTSLSF----------- 113
LR L LTSL+F
Sbjct: 183 AILYLQLVTRLNCVGCSYLTDKGFKLIGRLRELQELYFLHNKQLTSLTFLGNLDRLKKLS 242
Query: 114 ---------RRNNAITAQGMKAFAGLIN-----LVKLDLERCTRIHG-GLVNLKGLMKLE 158
+ +T + + AG ++ ++ +D+E + G GLV+L + +LE
Sbjct: 243 VDGMLNSRGKSTPQVTDETLGIIAGEMHSLRELIIGVDME----VSGIGLVHLAEMGRLE 298
Query: 159 SLNIKW--CNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP 215
SL+++ ITD+ +K L L L+SL+I+ C+ ++D + YL+ L ++ L L
Sbjct: 299 SLSLERGAGEGITDNGLKVLCSLGRLRSLRITHCAYLSDRSLNYLQHLHRIEKLEL---- 354
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKG 274
+C+D S +D+G + SK+ +LK L+L G+ +TD + +L
Sbjct: 355 ---SCVDDSS--------------FTDEGARQLSKLKNLKELSLVGWERLTDRGVYYLSK 397
Query: 275 LTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD 309
++ LE LNL C I DE L +L L L+ LELSD
Sbjct: 398 ISTLECLNLRYCPSITDESLEHLRYLKGLRKLELSD 433
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 121/240 (50%), Gaps = 24/240 (10%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISD----GGLEHLRGLSNLTSLSFRRNNA--IT 120
S +TD G + LQ L F Q++ G L+ L+ LS L+ R + +T
Sbjct: 199 SYLTDKGFKLIGRLRELQELYFLHNKQLTSLTFLGNLDRLKKLSVDGMLNSRGKSTPQVT 258
Query: 121 AQGMKAFAGLIN-----LVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWC--NCITDSD 172
+ + AG ++ ++ +D+E + G GLV+L + +LESL+++ ITD+
Sbjct: 259 DETLGIIAGEMHSLRELIIGVDME----VSGIGLVHLAEMGRLESLSLERGAGEGITDNG 314
Query: 173 MKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNL---EGCPVTAACLDSLSALG 228
+K L L L+SL+I+ C+ ++D + YL+ L ++ L L + T LS L
Sbjct: 315 LKVLCSLGRLRSLRITHCAYLSDRSLNYLQHLHRIEKLELSCVDDSSFTDEGARQLSKLK 374
Query: 229 SLFYLNL-NRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC 286
+L L+L +L+D G SKI +L+ LNL + ITDE L HL+ L L L L C
Sbjct: 375 NLKELSLVGWERLTDRGVYYLSKISTLECLNLRYCPSITDESLEHLRYLKGLRKLELSDC 434
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 28/157 (17%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR--RNNAITAQ 122
+G +TD+GL L L+SL C +SD L +L+ L + L +++ T +
Sbjct: 306 AGEGITDNGLKVLCSLGRLRSLRITHCAYLSDRSLNYLQHLHRIEKLELSCVDDSSFTDE 365
Query: 123 GMKAFAGLINLVKLDL---ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
G + + L NL +L L ER T G+ L + LE LN+++C ITD ++ L
Sbjct: 366 GARQLSKLKNLKELSLVGWERLT--DRGVYYLSKISTLECLNLRYCPSITDESLEHLR-- 421
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
YLKGL+KL L + + P
Sbjct: 422 -------------------YLKGLRKLELSDCDARPA 439
>gi|290971190|ref|XP_002668408.1| predicted protein [Naegleria gruberi]
gi|284081802|gb|EFC35664.1| predicted protein [Naegleria gruberi]
Length = 286
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 1/159 (0%)
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
++ + L L++S +G G +++S + L S+N+ + ISD + ++ + L LN+
Sbjct: 129 ISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQLILLNI 188
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
+ +I D G ++ + LT L++ I D GA ++ K L SL + ++ G K+
Sbjct: 189 GSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISVEGAKY 248
Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
I ++ L LLN+ N ++D+ + IS + L SL+ +N
Sbjct: 249 ISEMKQLILLNIGSN-RISDEGAKYISEMKQLTSLHTTN 286
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 91/171 (53%), Gaps = 2/171 (1%)
Query: 305 LELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
+E S +GS ++ +S + L S+++S I + ++ + L SLN+ QI+D
Sbjct: 113 VEFSGYLLGSRERVKFISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDK 172
Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
G ++ + L L++ RI D GA Y+ K L SL + + D G K I ++ LT
Sbjct: 173 GAKYISEMKQLILLNIGSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLT 232
Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
LN+ +N ++ + + IS + L+ LN+ ++RI+ G +++ +K L SL
Sbjct: 233 SLNVYKN-RISVEGAKYISEMKQLILLNIGSNRISDEGAKYISEMKQLTSL 282
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 79/160 (49%)
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
E + + + L SL++ IG EG ++ + L L + Q+ G +++S + L
Sbjct: 124 ERVKFISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQL 183
Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
+N+ I D + ++ + L SLN+ +I D G ++ + LT L+++ RI+
Sbjct: 184 ILLNIGSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISV 243
Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
GA Y+ K L L I ++D G K+I ++ LT L+
Sbjct: 244 EGAKYISEMKQLILLNIGSNRISDEGAKYISEMKQLTSLH 283
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 368 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
++ + LT LD+ I GA Y+ K L SL I ++D G K+I ++ L LLN+
Sbjct: 129 ISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQLILLNI 188
Query: 428 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 487
N + D+ + IS + L SLNVSN+ I G + + +K L SL + +++ K
Sbjct: 189 GSN-RIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISVEGAK 247
Query: 488 RL 489
+
Sbjct: 248 YI 249
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 77/153 (50%)
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
S++ L L++ N I E ++ + L SLN+ I D+G ++ + L L +
Sbjct: 130 SEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQLILLNIG 189
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
++G G +++S + L S+N+S I D + ++ + L SLN+ +I+ G +
Sbjct: 190 SNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISVEGAKYI 249
Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
+ + L L++ RI+D GA Y+ K L SL
Sbjct: 250 SEMKQLILLNIGSNRISDEGAKYISEMKQLTSL 282
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 80/158 (50%)
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
+ ++ +++LT L++ + +S + L LN+ Q+SD G + S++ L +
Sbjct: 126 VKFISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQLIL 185
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
LN+G N I DE ++ + L SLN+ + I DEG ++ + L L + ++ G
Sbjct: 186 LNIGSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISVEG 245
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
+++S + L +N+ ISD + ++ + L SL+
Sbjct: 246 AKYISEMKQLILLNIGSNRISDEGAKYISEMKQLTSLH 283
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 78/158 (49%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+K +S + L SL IS + + G Y+ +++LT LN+ ++ +S + L
Sbjct: 126 VKFISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQLIL 185
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
LN+ ++ D+G + S++ L LN+ NEI DE + + L SLN+ I EG
Sbjct: 186 LNIGSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISVEG 245
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
++ + L L + ++ G +++S + L S++
Sbjct: 246 AKYISEMKQLILLNIGSNRISDEGAKYISEMKQLTSLH 283
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 85/166 (51%), Gaps = 4/166 (2%)
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
+ + +K + + L LD+ + G + + +L SLNI + N I+D K +S +
Sbjct: 122 SRERVKFISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNI-YYNQISDKGAKYISEM 180
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
L L I +++ D G Y+ +++LT LN+ + +S + L LN+ + +
Sbjct: 181 KQLILLNIGSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNR 240
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDE---CLVHLKGLTNLESLN 282
+S +G + S++ L +LN+G N I+DE + +K LT+L + N
Sbjct: 241 ISVEGAKYISEMKQLILLNIGSNRISDEGAKYISEMKQLTSLHTTN 286
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 81/154 (52%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+S + L L+++ + +G + S++ L LN+ +N+I+D+ ++ + L LN+
Sbjct: 129 ISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQLILLNI 188
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
S IGDEG ++ + L L +S+ ++ G + +S + L S+N+ IS +
Sbjct: 189 GSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISVEGAKY 248
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
++ + L LN+ + +I+D G ++ + LT L
Sbjct: 249 ISEMKQLILLNIGSNRISDEGAKYISEMKQLTSL 282
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 78/156 (50%), Gaps = 1/156 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SL+I N I K +S + L SL I ++++D G Y+ +++L LLN+
Sbjct: 132 MKQLTSLDIS-HNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQLILLNIGS 190
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ +S + L LN++ ++ D+G + S++ L LN+ N I+ E ++
Sbjct: 191 NRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISVEGAKYIS 250
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
+ L LN+ S I DEG ++ + L L ++
Sbjct: 251 EMKQLILLNIGSNRISDEGAKYISEMKQLTSLHTTN 286
>gi|315301242|ref|ZP_07872475.1| internalin A [Listeria ivanovii FSL F6-596]
gi|313630386|gb|EFR98286.1| internalin A [Listeria ivanovii FSL F6-596]
Length = 595
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 143/282 (50%), Gaps = 39/282 (13%)
Query: 223 SLSALGSLFYLN-LNRCQLSDDGCEKFSK---IGSLKVLNLGFNEITDECLVHLKGLTNL 278
++ ++ + YLN L+R ++ S+ + SL +++G N I++ L L LTNL
Sbjct: 86 NIQSIEGIQYLNNLDRLYFGENNISDISQLSGVTSLTYVDVGENNISN--LSPLANLTNL 143
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
ESL LD I D + NL GL L L L+D + L +SGL NL+ + ISD
Sbjct: 144 ESLGLDKNNISD--ISNLAGLSKLSNLSLNDNNL--DNLSDVSGLINLKELKAGGNSISD 199
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
L L+ L ++ SL L I+D L+ L LT + +L+L+ I S + + NF ++
Sbjct: 200 --LTPLSNLINMVSLYLADNNISD--LSPLAKLTKIDYLNLYTNNI--SNISVVANFTDI 253
Query: 399 RSLEICGGGLTDAGV---------KH-----IKDLSSLT-LLNLSQ----NCNLTDKTLE 439
L + +TD V H I D+S+L L NL++ N N+TD L
Sbjct: 254 WGLYLGENNITDIAVLTNLTGLGELHLADNDIGDISNLANLTNLTELQLDNTNITD--LN 311
Query: 440 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
+S LT L L + N+RI+ ++ L+PL NL L L++ ++
Sbjct: 312 PLSNLTNLEYLYLENNRISD--IKSLQPLSNLLFLDLDNNQI 351
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 102/310 (32%), Positives = 142/310 (45%), Gaps = 73/310 (23%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+SL VD+ +++ S L L + +NL+SL + ISD + +L GLS L++LS N
Sbjct: 119 TSLTYVDVGENNI--SNLSPLANLTNLESLGLDKN-NISD--ISNLAGLSKLSNLSLNDN 173
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N + +GLINL +L GG N I SD+ PL
Sbjct: 174 NL---DNLSDVSGLINLKELK-------AGG------------------NSI--SDLTPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
S L N+ SL ++ D+ I+ L L KLT ++ YLNL
Sbjct: 204 SNLINMVSLYLA-----DNNISDLSPLAKLTKID---------------------YLNLY 237
Query: 237 RCQLSD-DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
+S+ F+ I L LG N ITD + L LT L L+L IGD + N
Sbjct: 238 TNNISNISVVANFTDIWGLY---LGENNITD--IAVLTNLTGLGELHLADNDIGD--ISN 290
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
L L NL L+L +T + + L LS LTNLE + L ISD ++ L LS+L L+L
Sbjct: 291 LANLTNLTELQLDNTNI--TDLNPLSNLTNLEYLYLENNRISD--IKSLQPLSNLLFLDL 346
Query: 356 DARQITDTGL 365
D QI D +
Sbjct: 347 DNNQIRDISI 356
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 124/256 (48%), Gaps = 37/256 (14%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT--- 207
L G+ L +++ N S++ PL+ LTNL+SL + + ++D I+ L GL KL+
Sbjct: 115 LSGVTSLTYVDVGENNI---SNLSPLANLTNLESLGLDKNNISD--ISNLAGLSKLSNLS 169
Query: 208 --------------LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS---K 250
L+NL+ + L+ L +L +N+ L+D+ S K
Sbjct: 170 LNDNNLDNLSDVSGLINLKELKAGGNSISDLTPLSNL--INMVSLYLADNNISDLSPLAK 227
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+ + LNL N I++ +V T++ L L I D + LT L L L L+D
Sbjct: 228 LTKIDYLNLYTNNISNISVV--ANFTDIWGLYLGENNITDIAV--LTNLTGLGELHLADN 283
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
+G + +L+ LTNL + L T I+D L L+ L++L+ L L+ +I+D + +L
Sbjct: 284 DIGD--ISNLANLTNLTELQLDNTNITD--LNPLSNLTNLEYLYLENNRISD--IKSLQP 337
Query: 371 LTGLTHLDLFGARITD 386
L+ L LDL +I D
Sbjct: 338 LSNLLFLDLDNNQIRD 353
>gi|290976022|ref|XP_002670740.1| predicted protein [Naegleria gruberi]
gi|284084302|gb|EFC37996.1| predicted protein [Naegleria gruberi]
Length = 213
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 101/195 (51%)
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
LN+ ++ +G + S++ L L++ NEI E ++ + L SL++ IG EG
Sbjct: 7 LNIGYNEIGVEGSKFISEMKQLTSLDIYSNEIGVEGAKYISEMKQLTSLDIHYNEIGVEG 66
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
++ + L L++ Q+G G +++S + L S+++ + I + ++ ++ L S
Sbjct: 67 SKYISEMNQLTSLDIHSNQIGVEGAKYISEMKQLTSLDIHYNEIGVEGSKYISEMNQLTS 126
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
L++ + QI G ++ + LT LD+ I G+ Y+ K+L SL+I + G
Sbjct: 127 LDIHSNQIGVEGAKFISEMKSLTSLDIHYNEIGVEGSKYISEMKSLTSLDIYSNEIGVEG 186
Query: 413 VKHIKDLSSLTLLNL 427
K+I +++ LT L++
Sbjct: 187 AKYISEMNQLTSLDM 201
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 104/211 (49%), Gaps = 1/211 (0%)
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
+ L SLN+ IG EG ++ + L L++ ++G G +++S + L S+++ +
Sbjct: 1 MKQLTSLNIGYNEIGVEGSKFISEMKQLTSLDIYSNEIGVEGAKYISEMKQLTSLDIHYN 60
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
I + ++ ++ L SL++ + QI G ++ + LT LD+ I G+ Y+
Sbjct: 61 EIGVEGSKYISEMNQLTSLDIHSNQIGVEGAKYISEMKQLTSLDIHYNEIGVEGSKYISE 120
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
L SL+I + G K I ++ SLT L++ N + + + IS + L SL++ +
Sbjct: 121 MNQLTSLDIHSNQIGVEGAKFISEMKSLTSLDIHYN-EIGVEGSKYISEMKSLTSLDIYS 179
Query: 455 SRITSAGLRHLKPLKNLRSLTLESCKVTAND 485
+ I G +++ + L SL + K+ +
Sbjct: 180 NEIGVEGAKYISEMNQLTSLDMLPIKLVQKE 210
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 91/177 (51%)
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
L LN+G+NEI E + + L SL++ S IG EG ++ + L L++ ++G
Sbjct: 4 LTSLNIGYNEIGVEGSKFISEMKQLTSLDIYSNEIGVEGAKYISEMKQLTSLDIHYNEIG 63
Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
G +++S + L S+++ I + ++ + L SL++ +I G ++ +
Sbjct: 64 VEGSKYISEMNQLTSLDIHSNQIGVEGAKYISEMKQLTSLDIHYNEIGVEGSKYISEMNQ 123
Query: 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
LT LD+ +I GA ++ K+L SL+I + G K+I ++ SLT L++ N
Sbjct: 124 LTSLDIHSNQIGVEGAKFISEMKSLTSLDIHYNEIGVEGSKYISEMKSLTSLDIYSN 180
Score = 41.6 bits (96), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 88/188 (46%), Gaps = 15/188 (7%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D+ +++ G ++ + L SLD ++ +I G +++ ++ LTSL
Sbjct: 23 SEMKQLTSLDIYSNEIGVEGAKYISEMKQLTSLDIHYN-EIGVEGSKYISEMNQLTSLDI 81
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG------LMKLESLNIKWCNC 167
+N I +G K + + L LD IH + ++G + +L SL+I N
Sbjct: 82 -HSNQIGVEGAKYISEMKQLTSLD------IHYNEIGVEGSKYISEMNQLTSLDI-HSNQ 133
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I K +S + +L SL I +++ G Y+ ++ LT L++ + +S +
Sbjct: 134 IGVEGAKFISEMKSLTSLDIHYNEIGVEGSKYISEMKSLTSLDIYSNEIGVEGAKYISEM 193
Query: 228 GSLFYLNL 235
L L++
Sbjct: 194 NQLTSLDM 201
>gi|71744514|ref|XP_803787.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70831052|gb|EAN76557.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 490
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 121/457 (26%), Positives = 197/457 (43%), Gaps = 53/457 (11%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
V L L+ C+++Q+L F +D L + L +L LS A ++ F
Sbjct: 48 VERESLRSLRLCTSIQTLRFEGEYPFAD--LSPIPELRSLGELSIEE-----APKLENFV 100
Query: 129 GLINLVKLDLERCTR--IHGG-LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
G+ NL +L I GG L L L L + C + D+ PL+ +T L+ L
Sbjct: 101 GIKNLPQLKALEVAEAPIRGGCLQTLTAGCNLVKLCLDSCPYL--KDVSPLAEMTALEHL 158
Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEG--------------------CPVTAACLDS-- 223
I ++GI L L L L L G C V+ CL
Sbjct: 159 AICKCVGIETGIGSLGKLPALRELYLIGTSMRGNSLRGLGATTSLLNLCIVSCGCLTDVL 218
Query: 224 -LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN---LE 279
++ + L L L C ++G K + +L L+L ++ I D V L+GL++ L
Sbjct: 219 HIADVQVLRQLTLESCTSLEEGVGKLGGLPALYELDLSYSSIVD---VFLQGLSSSRSLV 275
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLE---LSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
LNL C + L +++ L LK L+ L + +G+ L L L ++LS T I
Sbjct: 276 KLNLSWC----DQLTDVSPLAELKTLKYLNLQSCEAVVAGIGDLGKLPGLYELDLSCTPI 331
Query: 337 SDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
+D +LR L SL L++ + +TD L+AL SL L L+L G +
Sbjct: 332 TDCALRDLCSSRSLVRLDISSCDNLTD--LSALVSLKTLGELNLDACTEVKQGIGNISQL 389
Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 455
LR L+ +TD ++ + SL +L L ++TD + ++ + L +++++
Sbjct: 390 PELRRLDGTCLPITDDSLRDLSASRSLVVLCLDTCMDITD--VSCLAAVKTLEEISLNSC 447
Query: 456 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 492
G+ L L LRS+ L K+ + + LQ+R
Sbjct: 448 LSVEKGVEALTTLPRLRSVNLRGVKIDSEVLSELQAR 484
>gi|242057027|ref|XP_002457659.1| hypothetical protein SORBIDRAFT_03g011312 [Sorghum bicolor]
gi|241929634|gb|EES02779.1| hypothetical protein SORBIDRAFT_03g011312 [Sorghum bicolor]
Length = 81
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/53 (73%), Positives = 45/53 (84%)
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
L+K++GLSS+K LNLD RQIT+TGLA+L SLTGLTHLDLFGARI DSG R
Sbjct: 29 LKKISGLSSMKPLNLDNRQITNTGLASLASLTGLTHLDLFGARIIDSGMNCFR 81
>gi|290996875|ref|XP_002681007.1| leucine-rich repeat family protein [Naegleria gruberi]
gi|284094630|gb|EFC48263.1| leucine-rich repeat family protein [Naegleria gruberi]
Length = 398
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 139/307 (45%), Gaps = 28/307 (9%)
Query: 162 IKWCNCIT-DSDMKPLSGLTNLKSLQISCS--------------KVTDSGIAYL------ 200
++ C C+T D D++P+S ++ L L IS + K+ + G ++
Sbjct: 84 LELCECLTGDKDIRPISRMSQLTKLNISKNAKYHLSDIFDMKQLKILEIGENFIGDEQAE 143
Query: 201 ---KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
L++LT+L + + + + LS L L L+L+ +D + +K+ LK L
Sbjct: 144 LLSNHLKQLTILRINNNLIHSQGVKHLSKLDQLTELDLSGNAFNDTIGSEIAKMEQLKTL 203
Query: 258 N---LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
+ L + + L L SL++ + IGDEG ++ L L L + ++G
Sbjct: 204 HVNKLARHRMGSRLGSQFGNLFQLTSLSISNNYIGDEGANEISNLTQLTELYVHGAEIGY 263
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
G R LS L L +++S I D +R LS L L + +I D G ++ + L
Sbjct: 264 RGARSLSVLHQLTKLDISTNHIGDEGVRLFKQLSKLTELVVFNNRIGDVGAQLISEIPQL 323
Query: 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
T L + +I + GA + L+ L I G + D G K + +++ L + + N N++
Sbjct: 324 TSLVVSSNQIGNEGAKSISQMSKLKYLSINGNQIGDQGAKLLSEMNQLRRIEVYGN-NIS 382
Query: 435 DKTLELI 441
++ +L
Sbjct: 383 NEIFQLF 389
>gi|395539122|ref|XP_003771522.1| PREDICTED: F-box/LRR-repeat protein 13, partial [Sarcophilus
harrisii]
Length = 509
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 117/420 (27%), Positives = 188/420 (44%), Gaps = 50/420 (11%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDC-SNLQSLDFNFC 91
LQ+L + Q G+ND M + SL+ ++++ +D+++ L L C NLQ L +C
Sbjct: 83 LQELNVSQCEGLNDDAMRYVLEGCPSLIHLNIAHTDISNGTLKLLSRCFPNLQKLSLAYC 142
Query: 92 IQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFA----GLINLVKLDL------ 138
++ GL +L +G +T+L I+ QG K A G+ +LV D+
Sbjct: 143 RNFTEKGLLYLNLGKGCHKITNLDLSGCTQISVQGFKDIASSCTGIKHLVINDMPTLTDN 202
Query: 139 ------ERCTRI---------HGGLVNLKGLM--KLESLNIKWCNCITDSDMKPL-SGLT 180
ERC I H K L L + ++ N ITD K +
Sbjct: 203 CIKALVERCKSITSVIFIGSPHLSDTAFKYLTDCSLNKVRVEGNNRITDLTFKLMDKHYG 262
Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG-----SLFYLN 234
+L + ++ C ++TD + + L+ L +LNL C + + S LG L LN
Sbjct: 263 DLSHIYMTDCERITDVSLKSIANLKNLVVLNLANC-IRIGDVGLRSFLGGPSSSKLRELN 321
Query: 235 LNRC-QLSD-DGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
L C Q+SD E + SL LNL ++TD + + L NL S++L I DE
Sbjct: 322 LTHCAQISDLSLAEMGERCRSLTYLNLRSCTQLTDCGIEFITKLPNLISIDLSVTAITDE 381
Query: 292 GLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTN-LESINLSFTGISDGSLRKLAGLSS 349
L +L+ LK L +S+ + + SG++H T LE +++SF G + K
Sbjct: 382 ALTSLSNHKKLKELSVSECEFITDSGVKHFCQSTPILEHLDVSFCLKLSGEILKALSTKC 441
Query: 350 LKSLNLD---ARQITDTGLAALTSLTGLTH-LDLFG-ARITDSGAAY-LRNFKNLRSLEI 403
L+ +L ++ D + L+ H LD+ G R+TD Y L+ K LR L++
Sbjct: 442 LRLTSLSIAGCPKMNDLAIRILSKKCHYLHILDVSGCVRLTDKAIEYLLQGCKQLRILKM 501
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 103/403 (25%), Positives = 176/403 (43%), Gaps = 60/403 (14%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN--LKGLMKLESL 160
R N+ L+F +++ K NL +L++ +C ++ + L+G L L
Sbjct: 53 RWRPNVLRLNFHGCSSLQWPSFKLINQCKNLQELNVSQCEGLNDDAMRYVLEGCPSLIHL 112
Query: 161 NIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYL---KGLQKLTLLNLEGCP 215
NI + I++ +K LS NL+ L ++ C T+ G+ YL KG K+T L+L GC
Sbjct: 113 NIAHTD-ISNGTLKLLSRCFPNLQKLSLAYCRNFTEKGLLYLNLGKGCHKITNLDLSGCT 171
Query: 216 VTAA--CLDSLSALGSLFYLNLNRCQLSDDGC-----EKFSKIGSLKVLNLGFNEITDEC 268
+ D S+ + +L +N D C E+ I S V+ +G ++D
Sbjct: 172 QISVQGFKDIASSCTGIKHLVINDMPTLTDNCIKALVERCKSITS--VIFIGSPHLSDTA 229
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
+L + L + ++ G+ + +LT +L D G L H+ +T+ E
Sbjct: 230 FKYLTDCS-LNKVRVE----GNNRITDLT-------FKLMDKHYGD--LSHIY-MTDCER 274
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDS 387
I +D SL+ +A L +L LNL + +I D GL + +
Sbjct: 275 I-------TDVSLKSIANLKNLVVLNLANCIRIGDVGLRSF---------------LGGP 312
Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
++ LR +I L + G + SLT LNL LTD +E I+ L L
Sbjct: 313 SSSKLRELNLTHCAQISDLSLAEMGER----CRSLTYLNLRSCTQLTDCGIEFITKLPNL 368
Query: 448 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK-VTANDIKRL 489
+S+++S + IT L L K L+ L++ C+ +T + +K
Sbjct: 369 ISIDLSVTAITDEALTSLSNHKKLKELSVSECEFITDSGVKHF 411
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 33/164 (20%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L+S+DLS + +TD L L + L+ L + C I+D G++H F ++
Sbjct: 367 NLISIDLSVTAITDEALTSLSNHKKLKELSVSECEFITDSGVKH-----------FCQST 415
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL----MKLESLNIKWCNCITDSDM 173
I L LD+ C ++ G + LK L ++L SL+I C + D +
Sbjct: 416 PI-------------LEHLDVSFCLKLSGEI--LKALSTKCLRLTSLSIAGCPKMNDLAI 460
Query: 174 KPLSGLTN-LKSLQIS-CSKVTDSGIAY-LKGLQKLTLLNLEGC 214
+ LS + L L +S C ++TD I Y L+G ++L +L + C
Sbjct: 461 RILSKKCHYLHILDVSGCVRLTDKAIEYLLQGCKQLRILKMRYC 504
>gi|300693080|ref|YP_003749053.1| type III effector protein [Ralstonia solanacearum PSI07]
gi|299075117|emb|CBJ34399.1| leucine-rich-repeat type III effector protein (GALA3) [Ralstonia
solanacearum PSI07]
Length = 492
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 98/365 (26%), Positives = 166/365 (45%), Gaps = 39/365 (10%)
Query: 133 LVKLDLERCTRIHGGLVNLKGL-----MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L +LDL RC R+ ++GL + L LNI C + L+ L SL +
Sbjct: 98 LRELDLSRCERLR-----VEGLDHLLELPLVRLNINGCRLGAKGAQR-LANHPTLTSLDM 151
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
+++ D G YL +LT+L++ + A + +L+ +L L+L+R + DG
Sbjct: 152 HGNRIGDEGAKYLAANTRLTVLDVGDNMIGDAGVIALARNTTLTSLHLDRNKFGLDGIRA 211
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
+ +L LN+ N I E L T L +L+++ IGD+G L L L +
Sbjct: 212 LADNTTLTTLNVNKNSIRPEGAEVLATNTTLTTLDIEGNAIGDQGAQRLAASKTLTALNV 271
Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-------------GLS------ 348
+ ++G +G L+ L S+ + + GI ++ +A G+S
Sbjct: 272 RENEIGRAGGFALAVNKTLVSLAVGYNGIGSEAVIAMAANKRLISLDVEYTGISTAVAEV 331
Query: 349 --------SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
SL LN+ A D G L + +T L++ RI GA L K + S
Sbjct: 332 AAALAASTSLVCLNVGANGFGDEGARRLAASKTITTLNVSYNRIGRDGALALAASKMITS 391
Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
L++ G + AG+K + D ++L LNLS++ + + +E ++ T L SL+VS + + A
Sbjct: 392 LDLAGNIIGTAGIKALVDNTTLATLNLSKS-QIAHEGVEALATNTTLASLDVSCNNLAPA 450
Query: 461 GLRHL 465
+R L
Sbjct: 451 SVRML 455
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 113/423 (26%), Positives = 181/423 (42%), Gaps = 21/423 (4%)
Query: 39 GQYPG------VNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFC 91
G YP V D W + ++ ++L +DLS + + GL HL + L L+ N C
Sbjct: 72 GNYPNLTELTLVGDFWSNDLSGLPTTLRELDLSRCERLRVEGLDHLLELP-LVRLNINGC 130
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
++ G + L LTSL N I +G K A L LD+ G++ L
Sbjct: 131 -RLGAKGAQRLANHPTLTSLDMH-GNRIGDEGAKYLAANTRLTVLDVGDNMIGDAGVIAL 188
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
L SL++ D ++ L+ T L +L ++ + + G L LT L++
Sbjct: 189 ARNTTLTSLHLDRNKFGLDG-IRALADNTTLTTLNVNKNSIRPEGAEVLATNTTLTTLDI 247
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
EG + L+A +L LN+ ++ G + +L L +G+N I E ++
Sbjct: 248 EGNAIGDQGAQRLAASKTLTALNVRENEIGRAGGFALAVNKTLVSLAVGYNGIGSEAVIA 307
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGL---CNLKCLELSDTQVGSSGLRHLSGLTNLES 328
+ L SL+++ GI L +L CL + G G R L+ + +
Sbjct: 308 MAANKRLISLDVEYTGISTAVAEVAAALAASTSLVCLNVGANGFGDEGARRLAASKTITT 367
Query: 329 INLSFTGIS-DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
+N+S+ I DG+L LA + SL+L I G+ AL T L L+L ++I
Sbjct: 368 LNVSYNRIGRDGAL-ALAASKMITSLDLAGNIIGTAGIKALVDNTTLATLNLSKSQIAHE 426
Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS-QNCNLTDK----TLELIS 442
G L L SL++ L A V+ + + L LL S C+L K TL +
Sbjct: 427 GVEALATNTTLASLDVSCNNLAPASVRMLLTRTKLALLEASFSACDLGAKAELMTLAVRI 486
Query: 443 GLT 445
G+T
Sbjct: 487 GMT 489
>gi|4972088|emb|CAB43884.1| putative protein [Arabidopsis thaliana]
gi|7269233|emb|CAB81302.1| putative protein [Arabidopsis thaliana]
Length = 364
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 138/286 (48%), Gaps = 32/286 (11%)
Query: 215 PVTAACLDSLSAL---GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
P T + L SL L G+ F ++ C + + + N F
Sbjct: 10 PKTHSSLASLKKLVLSGANFSAETESLSFTNKSCITYLDVSKTSLKNFSF---------- 59
Query: 272 LKGLTNLESLNLDSCGIGDE--GLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLES 328
L+ + NLE L+L S GD+ G V G NLK L +SDTQ+ SG+ +L+G + LE+
Sbjct: 60 LETMFNLEHLDLSSTAFGDDSVGFVACVG-ENLKNLNVSDTQITPSGVGNLAGHVPQLET 118
Query: 329 INLSFTGISDGSLRKLAG-LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
+++S T + D S+ ++ + +K+L+L + S G +L + +
Sbjct: 119 LSMSQTFVDDLSILLISTTMPCIKALDL-----------GMNSTLGFYYL-ISPQEEKEK 166
Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
A L++ +L +L + L D + + L+ LT L+L+ + +LTD TL +S L L
Sbjct: 167 SLAALQSLTSLETLSLEHPYLGDKALSGLSSLTGLTHLSLT-STSLTDSTLHHLSSLPNL 225
Query: 448 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK-VTANDIKRLQSR 492
VSL V + +TS GL +P LR+L L+ C +T +DI L R
Sbjct: 226 VSLGVRDGVLTSNGLEKFRPPNRLRTLDLQGCWLLTKDDIAGLCKR 271
>gi|168700133|ref|ZP_02732410.1| hypothetical protein GobsU_11435 [Gemmata obscuriglobus UQM 2246]
Length = 167
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 338 DGSLRKLAGLSS-LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
D +++LA L+ L +LNL ++TD G+ L +L LT+LDL G +TD+G L K
Sbjct: 5 DAGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLK 64
Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456
L LE+ +TDAGVK + L +L L+L +TD + +SGL LV+L++SN++
Sbjct: 65 GLTRLELRSTKITDAGVKELAALKNLNHLDLG-GTKVTDAGAKELSGLNFLVTLDLSNTQ 123
Query: 457 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP 495
+T AG++ L L L +L L VT +K L + LP
Sbjct: 124 VTDAGVKALTALTGLTTLDLHGTGVTDAGLKELNAA-LP 161
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 73/126 (57%), Gaps = 1/126 (0%)
Query: 290 DEGLVNLTGLCN-LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
D G+ L L L L L T+V G++ L+ L L +++L TG++D +++L+GL
Sbjct: 5 DAGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLK 64
Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
L L L + +ITD G+ L +L L HLDL G ++TD+GA L L +L++ +
Sbjct: 65 GLTRLELRSTKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQV 124
Query: 409 TDAGVK 414
TDAGVK
Sbjct: 125 TDAGVK 130
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 89/148 (60%), Gaps = 1/148 (0%)
Query: 242 DDGCEKFSKIGS-LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
D G ++ + + L LNL +TD + L L L +L+L G+ D G+ L+GL
Sbjct: 5 DAGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLK 64
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
L LEL T++ +G++ L+ L NL ++L T ++D ++L+GL+ L +L+L Q+
Sbjct: 65 GLTRLELRSTKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQV 124
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSG 388
TD G+ ALT+LTGLT LDL G +TD+G
Sbjct: 125 TDAGVKALTALTGLTTLDLHGTGVTDAG 152
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 80/144 (55%), Gaps = 3/144 (2%)
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
KGLT +LNL + D G+ L L L L+L T V +G++ LSGL L + L
Sbjct: 16 KGLT---TLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLKGLTRLELR 72
Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
T I+D +++LA L +L L+L ++TD G L+ L L LDL ++TD+G L
Sbjct: 73 STKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQVTDAGVKAL 132
Query: 393 RNFKNLRSLEICGGGLTDAGVKHI 416
L +L++ G G+TDAG+K +
Sbjct: 133 TALTGLTTLDLHGTGVTDAGLKEL 156
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 219 ACLDSLSALGS-LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
A + L+AL L LNL R +++D G ++ + + +L L+LG +TD + L GL
Sbjct: 6 AGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLKG 65
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L L L S I D G+ L L NL L+L T+V +G + LSGL L +++LS T ++
Sbjct: 66 LTRLELRSTKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQVT 125
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370
D ++ L L+ L +L+L +TD GL L +
Sbjct: 126 DAGVKALTALTGLTTLDLHGTGVTDAGLKELNA 158
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 85/152 (55%), Gaps = 1/152 (0%)
Query: 194 DSGIAYLKGLQK-LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
D+G+ L L K LT LNL VT + L+AL +L L+L ++D G ++ S +
Sbjct: 5 DAGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLK 64
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
L L L +ITD + L L NL L+L + D G L+GL L L+LS+TQV
Sbjct: 65 GLTRLELRSTKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQV 124
Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
+G++ L+ LT L +++L TG++D L++L
Sbjct: 125 TDAGVKALTALTGLTTLDLHGTGVTDAGLKEL 156
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 170 DSDMKPLSGLTN-LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
D+ +K L+ L L +L + ++VTD G+ L L+ LT L+L G VT A + LS L
Sbjct: 5 DAGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLK 64
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
L L L +++D G ++ + + +L L+LG ++TD L GL L +L+L + +
Sbjct: 65 GLTRLELRSTKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQV 124
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
D G+ LT L L L+L T V +GL+ L+
Sbjct: 125 TDAGVKALTALTGLTTLDLHGTGVTDAGLKELN 157
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 79/140 (56%), Gaps = 1/140 (0%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L +LN++ +TD +K L+ L L +L + + VTD+G+ L GL+ LT L L +
Sbjct: 18 LTTLNLRRTR-VTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLKGLTRLELRSTKI 76
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
T A + L+AL +L +L+L +++D G ++ S + L L+L ++TD + L LT
Sbjct: 77 TDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQVTDAGVKALTALT 136
Query: 277 NLESLNLDSCGIGDEGLVNL 296
L +L+L G+ D GL L
Sbjct: 137 GLTTLDLHGTGVTDAGLKEL 156
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 96 DGGLEHLRGLSN-LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154
D G++ L L+ LT+L+ RR +T G+K A L L LDL G+ L GL
Sbjct: 5 DAGVKELAALNKGLTTLNLRRTR-VTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGL 63
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
L L ++ ITD+ +K L+ L NL L + +KVTD+G L GL L L+L
Sbjct: 64 KGLTRLELRSTK-ITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNT 122
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
VT A + +L+AL L L+L+ ++D G ++ +
Sbjct: 123 QVTDAGVKALTALTGLTTLDLHGTGVTDAGLKELN 157
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 86/181 (47%), Gaps = 27/181 (14%)
Query: 46 DKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL 105
D + +A+ L +++L + VTD G+ L L +LD ++D G++ L GL
Sbjct: 5 DAGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGT-GVTDAGVKELSGL 63
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
LT L R + IT G+K A L NL LDL GG
Sbjct: 64 KGLTRLELR-STKITDAGVKELAALKNLNHLDL-------GG------------------ 97
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+TD+ K LSGL L +L +S ++VTD+G+ L L LT L+L G VT A L L+
Sbjct: 98 TKVTDAGAKELSGLNFLVTLDLSNTQVTDAGVKALTALTGLTTLDLHGTGVTDAGLKELN 157
Query: 226 A 226
A
Sbjct: 158 A 158
>gi|356505803|ref|XP_003521679.1| PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max]
Length = 641
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/377 (29%), Positives = 187/377 (49%), Gaps = 38/377 (10%)
Query: 69 VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN--AITAQGMK 125
VTD GL + C L+ L +C++ISD G++ L L F + +T++ ++
Sbjct: 158 VTDIGLAKIAVGCGKLERLSLKWCLEISDLGIDLL--CKKCLDLKFLDVSYLKVTSESLR 215
Query: 126 AFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLESLNIKWCNCITDSDM-KPLSGLTNL 182
+ A L+ L + C+ + GL L KG L+++++ C+C++ S + +SG L
Sbjct: 216 SIASLLKLEVFVMVGCSLVDDVGLRFLEKGCPLLKAIDVSRCDCVSSSGLISVISGHGGL 275
Query: 183 KSLQ--ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA-LGSLFYLNLNRCQ 239
+ L S+++ + L+ L++L ++ ++G V+ L ++ SL L L++C
Sbjct: 276 EQLDAGYCLSELSAPLVKCLENLKQLRIIRIDGVRVSDFILQTIGTNCKSLVELGLSKCV 335
Query: 240 -LSDDGCEKF-SKIGSLKVLNL---------GFNEITDECLVHLKGLTNLESLNLDSCGI 288
+++ G + S G LK+L+L + I D C +L L L+SC +
Sbjct: 336 GVTNKGIVQLVSGCGYLKILDLTCCRFISDAAISTIADSC-------PDLVCLKLESCDM 388
Query: 289 GDEGLVNLTGL-CN-LKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKL 344
E + GL C+ LK L+L+D V LR+LS + L + L T ISD L +
Sbjct: 389 VTENCLYQLGLNCSLLKELDLTDCSGVDDIALRYLSRCSELVRLKLGLCTNISDIGLAHI 448
Query: 345 A-GLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDL-FGARITDSGAAYLRNFKNLRS 400
A + L+L +I D GLAALTS GLT+L+L + RITD G Y+ + L
Sbjct: 449 ACNCPKMTELDLYRCVRIGDDGLAALTSGCKGLTNLNLSYCNRITDRGLEYISHLGELSD 508
Query: 401 LEICG-GGLTDAGVKHI 416
LE+ G +T G+K +
Sbjct: 509 LELRGLSNITSIGIKAV 525
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 127/539 (23%), Positives = 214/539 (39%), Gaps = 134/539 (24%)
Query: 82 NLQSLDFNFCIQISDG-------------------------------GLEHL-RGLSNLT 109
N+++LD + C +I DG GLE L R L
Sbjct: 64 NIETLDLSMCPRIEDGAVSVVLSQGSASWTRGLRRLVLSRATGLGHVGLEMLIRACPMLE 123
Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLESLNIKWCNC 167
++ + A + L +L++++C + GL + G KLE L++KWC
Sbjct: 124 AVDVSHCWGYGDREAAALSCAARLRELNMDKCLGVTDIGLAKIAVGCGKLERLSLKWCLE 183
Query: 168 ITDSDMKPL-SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL--------------- 211
I+D + L +LK L +S KVT + + L KL + +
Sbjct: 184 ISDLGIDLLCKKCLDLKFLDVSYLKVTSESLRSIASLLKLEVFVMVGCSLVDDVGLRFLE 243
Query: 212 EGCPVTAA-------CLDS------LSALGSLFYLNLNRC--QLSDDGCEKFSKIGSLKV 256
+GCP+ A C+ S +S G L L+ C +LS + + L++
Sbjct: 244 KGCPLLKAIDVSRCDCVSSSGLISVISGHGGLEQLDAGYCLSELSAPLVKCLENLKQLRI 303
Query: 257 LNLGFNEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLC-------------- 300
+ + ++D L + +L L L C G+ ++G+V L C
Sbjct: 304 IRIDGVRVSDFILQTIGTNCKSLVELGLSKCVGVTNKGIVQLVSGCGYLKILDLTCCRFI 363
Query: 301 -------------NLKCLELSDTQVGSSGLRHLSGL--TNLESINLS-FTGISDGSLRKL 344
+L CL+L + + + GL + L+ ++L+ +G+ D +LR L
Sbjct: 364 SDAAISTIADSCPDLVCLKLESCDMVTENCLYQLGLNCSLLKELDLTDCSGVDDIALRYL 423
Query: 345 AGLSSLKSLNLD-ARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYL----RNFKN 397
+ S L L L I+D GLA + + +T LDL+ RI D G A L + N
Sbjct: 424 SRCSELVRLKLGLCTNISDIGLAHIACNCPKMTELDLYRCVRIGDDGLAALTSGCKGLTN 483
Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
L +L C +TD G+++I L L+ L L N+T G+ ++ +S R+
Sbjct: 484 L-NLSYC-NRITDRGLEYISHLGELSDLELRGLSNITS---------IGIKAVAISCKRL 532
Query: 458 TSAGLRHLKPL------------KNLRSLTLESCKVT-------ANDIKRLQSRDLPNL 497
L+H + + +NLR + + C V+ ++KRLQ L L
Sbjct: 533 ADLDLKHCEKIDDSGFWALAFYSQNLRQINMSYCIVSDMVLCMLMGNLKRLQDAKLVCL 591
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 133/280 (47%), Gaps = 35/280 (12%)
Query: 79 DCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKL 136
+C +L L + C+ +++ G+ L G L L I+ + A +LV L
Sbjct: 322 NCKSLVELGLSKCVGVTNKGIVQLVSGCGYLKILDLTCCRFISDAAISTIADSCPDLVCL 381
Query: 137 DLERCTRIHGGLVNLKGL--MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVT 193
LE C + + GL L+ L++ C+ + D ++ LS + L L++ C+ ++
Sbjct: 382 KLESCDMVTENCLYQLGLNCSLLKELDLTDCSGVDDIALRYLSRCSELVRLKLGLCTNIS 441
Query: 194 DSGIAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGS----LFYLNLNRC-QLSDDGCEK 247
D G+A++ K+T L+L C D L+AL S L LNL+ C +++D G E
Sbjct: 442 DIGLAHIACNCPKMTELDLYRCVRIGD--DGLAALTSGCKGLTNLNLSYCNRITDRGLEY 499
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
S +G E++D + L+GL+N+ S+ + + I + L +L +LK E
Sbjct: 500 ISHLG----------ELSD---LELRGLSNITSIGIKAVAISCKRLADL----DLKHCE- 541
Query: 308 SDTQVGSSGLRHLSGLT-NLESINLSFTGISDGSLRKLAG 346
++ SG L+ + NL IN+S+ +SD L L G
Sbjct: 542 ---KIDDSGFWALAFYSQNLRQINMSYCIVSDMVLCMLMG 578
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 22 EVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKD 79
+++L C+ L L LG ++D + IA + +DL + D GL L
Sbjct: 417 DIALRYLSRCSELVRLKLGLCTNISDIGLAHIACNCPKMTELDLYRCVRIGDDGLAALTS 476
Query: 80 -CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLD 137
C L +L+ ++C +I+D GLE++ L L+ L R + IT+ G+KA A L LD
Sbjct: 477 GCKGLTNLNLSYCNRITDRGLEYISHLGELSDLELRGLSNITSIGIKAVAISCKRLADLD 536
Query: 138 LERCTRI-HGGLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQ----ISCSK 191
L+ C +I G L + L +N+ +C SDM + NLK LQ + SK
Sbjct: 537 LKHCEKIDDSGFWALAFYSQNLRQINMSYC---IVSDMVLCMLMGNLKRLQDAKLVCLSK 593
Query: 192 VTDSGI 197
V+ G+
Sbjct: 594 VSVKGL 599
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 109/250 (43%), Gaps = 39/250 (15%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
++D + IA L+ + L D VT++ L L +CS L+ LD C + D L +
Sbjct: 363 ISDAAISTIADSCPDLVCLKLESCDMVTENCLYQLGLNCSLLKELDLTDCSGVDDIALRY 422
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HGGLVNL-KGLMKLE 158
L S L L I+ G+ A + +LDL RC RI GL L G L
Sbjct: 423 LSRCSELVRLKLGLCTNISDIGLAHIACNCPKMTELDLYRCVRIGDDGLAALTSGCKGLT 482
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VT 217
+LN+ +CN ++TD G+ Y+ L +L+ L L G +T
Sbjct: 483 NLNLSYCN------------------------RITDRGLEYISHLGELSDLELRGLSNIT 518
Query: 218 AACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIG----SLKVLNLGFNEITDECLVHL 272
+ + +++ + L L+L C+ DD F + +L+ +N+ + ++D L L
Sbjct: 519 SIGIKAVAISCKRLADLDLKHCEKIDDS--GFWALAFYSQNLRQINMSYCIVSDMVLCML 576
Query: 273 KGLTNLESLN 282
G NL+ L
Sbjct: 577 MG--NLKRLQ 584
>gi|434385223|ref|YP_007095834.1| Leucine Rich Repeat (LRR)-containing protein [Chamaesiphon minutus
PCC 6605]
gi|428016213|gb|AFY92307.1| Leucine Rich Repeat (LRR)-containing protein [Chamaesiphon minutus
PCC 6605]
Length = 362
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 98/320 (30%), Positives = 154/320 (48%), Gaps = 80/320 (25%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
SD++P++ LTNL+ L + +TD + +A LK L L + + L L LGS
Sbjct: 98 SDLRPIASLTNLRKLSLYSHNITDLTPLANLKQLDALV--------INSNKLTDLKPLGS 149
Query: 230 LFYLNLNRCQLSD-DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
L LN + + +K+ +LK L L ++ I D + +K LT L ++ I
Sbjct: 150 LNNLNDLGLLGRNIVNIKPIAKLTNLKKLTLWYSSIQD--IKAVKNLTQLTEVSFIDTKI 207
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
D L L L +L LE+++++V + +R LSGLTNL+ I L+ IS+ ++ LA L+
Sbjct: 208 AD--LSPLANLKSLTTLEVTNSKV--TDIRALSGLTNLKRIVLNNNQISN--IQPLARLT 261
Query: 349 SLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
+LKSLNL+ +I++ T LA LTSLTG
Sbjct: 262 NLKSLNLNFNRISNLTPLAGLTSLTG---------------------------------- 287
Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 467
+NLS N + D ++ I+ LT LV LN++N++IT ++KP
Sbjct: 288 -----------------INLSDN-QIVD--IQPIAALTQLVGLNLNNNKIT-----NIKP 322
Query: 468 LKNLRSLTLESCKVTANDIK 487
L L+ LE+ V+ N +K
Sbjct: 323 LAKLQK--LETLVVSKNKVK 340
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 134/288 (46%), Gaps = 29/288 (10%)
Query: 92 IQISD---GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148
IQI D LE LS T L ++ A L NL KL L +
Sbjct: 69 IQIPDCRAAALE----LSQRTELLTSSPTPADISDLRPIASLTNLRKLSLY-----SHNI 119
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLT 207
+L L L+ L+ N +D+KPL L NL L + + + IA L L+KLT
Sbjct: 120 TDLTPLANLKQLDALVINSNKLTDLKPLGSLNNLNDLGLLGRNIVNIKPIAKLTNLKKLT 179
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L + A + +L+ L + +++ LS + + SL L + +++TD
Sbjct: 180 LWYSSIQDIKA--VKNLTQLTEVSFIDTKIADLSP-----LANLKSLTTLEVTNSKVTD- 231
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
+ L GLTNL+ + L++ I + + L L NLK L L+ ++ S L L+GLT+L
Sbjct: 232 -IRALSGLTNLKRIVLNNNQISN--IQPLARLTNLKSLNLNFNRI--SNLTPLAGLTSLT 286
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT-GLAALTSLTGL 374
INLS I D ++ +A L+ L LNL+ +IT+ LA L L L
Sbjct: 287 GINLSDNQIVD--IQPIAALTQLVGLNLNNNKITNIKPLAKLQKLETL 332
>gi|398024920|ref|XP_003865621.1| hypothetical protein, conserved [Leishmania donovani]
gi|322503858|emb|CBZ38944.1| hypothetical protein, conserved [Leishmania donovani]
Length = 1208
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 146/294 (49%), Gaps = 17/294 (5%)
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
SG+ L L++L L++ P+ L +L+ SL + L+RC+ E ++ L
Sbjct: 422 SGVRSLGSLKQLRCLHILHTPLHETFLQALTTCSSLECIILHRCR-GVRSLEPLRRLEHL 480
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGD-EGLVNLTGLCNLKCLELSDTQV 312
+ L+L +TD L+ L G T L L LD C I D L NL G L+ L + T +
Sbjct: 481 QSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITDLSFLANLRG--TLERLLMPRTLL 538
Query: 313 GSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
++ + H+ L ++L S ++D + L L++L+ LNL +TD G +AL +
Sbjct: 539 SNANMHHIGLCDKLVELHLQSLRQLTD--IGVLKDLTALRVLNLSDNLVTDEGCSALHCM 596
Query: 372 TGLTHLDLFGAR-ITDSGAAYL---RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
L L+L R IT AA+ R L SL++ ++DAGV +++ + L LNL
Sbjct: 597 PSLQRLNLASCRCITSLAAAFTASGRCMHRLLSLDVSHTNISDAGVLCVQECTDLRYLNL 656
Query: 428 SQNCNLTD-KTLELISGLTGLVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESC 479
C ++ + L + ++ L LN+ +R+T R+L +NLR L+L C
Sbjct: 657 ---CGCSELRRLSWLQKMSSLRWLNLGGTRVTDEETKRYLPCTRNLRFLSLSGC 707
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 137/312 (43%), Gaps = 51/312 (16%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+ L G VTD+ L+ L C+ L+ L + C QI+D LSF N
Sbjct: 480 LQSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITD--------------LSFLANLR 525
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
T + + L++ + H GL + + L+SL +D+ L
Sbjct: 526 GTLERLLMPRTLLSNANMH-------HIGLCDKLVELHLQSLR-------QLTDIGVLKD 571
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA--------LGSL 230
LT L+ L +S + VTD G + L + L LNL C C+ SL+A + L
Sbjct: 572 LTALRVLNLSDNLVTDEGCSALHCMPSLQRLNLASC----RCITSLAAAFTASGRCMHRL 627
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIG 289
L+++ +SD G + L+ LNL G +E+ L L+ +++L LNL +
Sbjct: 628 LSLDVSHTNISDAGVLCVQECTDLRYLNLCGCSELRR--LSWLQKMSSLRWLNLGGTRVT 685
Query: 290 DEGLVN-LTGLCNLKCLELSDTQVGSSGLRHL---SGLTNLESINLSFTGISDGSLRKLA 345
DE L NL+ L LS G S +R L L LE +NL T ++D L L
Sbjct: 686 DEETKRYLPCTRNLRFLSLS----GCSSVRSLFFAVKLPQLEYLNLESTSVADSELACLC 741
Query: 346 GLSSLKSLNLDA 357
L+ L+L++
Sbjct: 742 HCRKLRYLSLES 753
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 98/192 (51%), Gaps = 9/192 (4%)
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSL 350
G+ +L L L+CL + T + + L+ L+ ++LE I L G+ SL L L L
Sbjct: 423 GVRSLGSLKQLRCLHILHTPLHETFLQALTTCSSLECIILHRCRGVR--SLEPLRRLEHL 480
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFK-NLRSLEICGGGL 408
+SL+L +TDT L +LT T L L L R ITD ++L N + L L + L
Sbjct: 481 QSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITD--LSFLANLRGTLERLLMPRTLL 538
Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 468
++A + HI L L+L LTD + ++ LT L LN+S++ +T G L +
Sbjct: 539 SNANMHHIGLCDKLVELHLQSLRQLTD--IGVLKDLTALRVLNLSDNLVTDEGCSALHCM 596
Query: 469 KNLRSLTLESCK 480
+L+ L L SC+
Sbjct: 597 PSLQRLNLASCR 608
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 91/328 (27%), Positives = 145/328 (44%), Gaps = 46/328 (14%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL-GSLF 231
++PL L +L+SL + VTD+ + L G +L L L+ C L L+ L G+L
Sbjct: 471 LEPLRRLEHLQSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITD-LSFLANLRGTLE 529
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L + R LS+ L L+L ++TD + LK LT L LNL + D
Sbjct: 530 RLLMPRTLLSNANMHHIGLCDKLVELHLQSLRQLTD--IGVLKDLTALRVLNLSDNLVTD 587
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG----LTNLESINLSFTGISDGSLRKLAG 346
EG L + +L+ L L+ + +S + + L S+++S T ISD + +
Sbjct: 588 EGCSALHCMPSLQRLNLASCRCITSLAAAFTASGRCMHRLLSLDVSHTNISDAGVLCVQE 647
Query: 347 LSSLKSLNL----DARQITDTGLAALTSLTGLTHLDLFGARITDSGAA-YLRNFKNLRSL 401
+ L+ LNL + R+ L+ L ++ L L+L G R+TD YL +NLR L
Sbjct: 648 CTDLRYLNLCGCSELRR-----LSWLQKMSSLRWLNLGGTRVTDEETKRYLPCTRNLRFL 702
Query: 402 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
+ G C+ + ++L L L LN+ ++ + +
Sbjct: 703 SLSG-------------------------CS-SVRSLFFAVKLPQLEYLNLESTSVADSE 736
Query: 462 LRHLKPLKNLRSLTLESCKVTANDIKRL 489
L L + LR L+LESC V D+ L
Sbjct: 737 LACLCHCRKLRYLSLESC-VDIRDVSPL 763
>gi|428320680|ref|YP_007118562.1| leucine-rich repeat-containing protein [Oscillatoria nigro-viridis
PCC 7112]
gi|428244360|gb|AFZ10146.1| leucine-rich repeat-containing protein [Oscillatoria nigro-viridis
PCC 7112]
Length = 360
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 134/260 (51%), Gaps = 20/260 (7%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
SD+ PL LTNLK+L I +++ D I+ L L LT+L L+ ++ + L+ L L
Sbjct: 104 SDIAPLQSLTNLKTLVIDVNQILD--ISPLSSLINLTVLVLDTNQISD--ISPLAGLTDL 159
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L L ++SD K + +L L L N+I+D + L+ LT L++L L + I D
Sbjct: 160 TALVLFDNKISDITPVK--NLTNLNALILYNNQISD--IAPLENLTELQTLYLYNNKISD 215
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
+ L L NL L L ++ S L L LTNL + L ISD S L L++L
Sbjct: 216 --ITPLASLKNLTTLFLFGNEI--SDLTPLEALTNLNKLVLFQNKISDIS--PLTSLTNL 269
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
LNL QI+D ++ L SLT LT L LF I+DS A L+ NL L++ ++D
Sbjct: 270 IELNLGNNQISD--ISPLKSLTNLTELYLFNNPISDSSA--LQALNNLFLLDLYNNQISD 325
Query: 411 AGVKHIKDLSSLTLLNLSQN 430
+ ++ L LT L+L N
Sbjct: 326 --ISSLESLHKLTTLDLRGN 343
>gi|357511815|ref|XP_003626196.1| F-box/LRR-repeat protein [Medicago truncatula]
gi|355501211|gb|AES82414.1| F-box/LRR-repeat protein [Medicago truncatula]
Length = 623
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 122/433 (28%), Positives = 204/433 (47%), Gaps = 59/433 (13%)
Query: 69 VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLS---NLTSLSFRRNNAITAQGM 124
VTD GL + CS L+ L +C++ISD G++ L N +S+ + +T + +
Sbjct: 197 VTDIGLAKIAVGCSKLEKLSLKWCLEISDLGIDLLSKKCFDLNFLDVSYLK---VTNESL 253
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNL-KGLMKLESLNIKWCNCITDSD-MKPLSGLTN 181
++ A L+ L + C + GL L KG L+++++ CNC++ S + +SG
Sbjct: 254 RSIASLLKLEVFIMVGCYLVDDAGLQFLEKGCPLLKAIDVSRCNCVSPSGLLSVISGHEG 313
Query: 182 LKSLQI-SC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRC 238
L+ + C S+++ LK L+ L+++ ++G V+ L + S SL L L++C
Sbjct: 314 LEQINAGHCLSELSAPLTNGLKNLKHLSVIRIDGVRVSDFILQIIGSNCKSLVELGLSKC 373
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT 297
+ V N+G ++ G NL +L+L C + D + +
Sbjct: 374 ---------------IGVTNMGIMQVV--------GCCNLTTLDLTCCRFVTDAAISTIA 410
Query: 298 GLC-NLKCLEL-SDTQVGSSGLRHL-SGLTNLESINLS-FTGISDGSLRKLAGLSSLKSL 353
C NL CL+L S V GL + S LE ++L+ +G++D +L+ L+ S L L
Sbjct: 411 NSCPNLACLKLESCDMVTEIGLYQIGSSCLMLEELDLTDCSGVNDIALKYLSRCSKLVRL 470
Query: 354 NLD-ARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKN---LRSLEICGGG 407
L I+D GLA + + LT LDL+ RI D G A L N + +L C
Sbjct: 471 KLGLCTNISDIGLAHIACNCPKLTELDLYRCVRIGDDGLAALTTGCNKLAMLNLAYC-NR 529
Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 467
+TDAG+K I +L L+ L N+T G+ ++ VS R+ + L+H +
Sbjct: 530 ITDAGLKCISNLGELSDFELRGLSNITS---------IGIKAVAVSCKRLANLDLKHCEK 580
Query: 468 LKN--LRSLTLES 478
L + R+L S
Sbjct: 581 LDDTGFRALAFYS 593
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 85/178 (47%), Gaps = 7/178 (3%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEH 101
V D + IA+ +L + L D VT+ GL + C L+ LD C ++D L++
Sbjct: 401 VTDAAISTIANSCPNLACLKLESCDMVTEIGLYQIGSSCLMLEELDLTDCSGVNDIALKY 460
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HGGLVNLK-GLMKLE 158
L S L L I+ G+ A L +LDL RC RI GL L G KL
Sbjct: 461 LSRCSKLVRLKLGLCTNISDIGLAHIACNCPKLTELDLYRCVRIGDDGLAALTTGCNKLA 520
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGI-AYLKGLQKLTLLNLEGC 214
LN+ +CN ITD+ +K +S L L ++ S +T GI A ++L L+L+ C
Sbjct: 521 MLNLAYCNRITDAGLKCISNLGELSDFELRGLSNITSIGIKAVAVSCKRLANLDLKHC 578
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 104/413 (25%), Positives = 172/413 (41%), Gaps = 57/413 (13%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L+ L L ++D +D+++ + L +D+S VT+ L + L+ C
Sbjct: 212 LEKLSLKWCLEISDLGIDLLSKKCFDLNFLDVSYLKVTNESLRSIASLLKLEVFIMVGCY 271
Query: 93 QISDGGLEHL-RGLSNLTSLSFRRNNAITAQG-MKAFAGLINLVKLDLERC-----TRIH 145
+ D GL+ L +G L ++ R N ++ G + +G L +++ C +
Sbjct: 272 LVDDAGLQFLEKGCPLLKAIDVSRCNCVSPSGLLSVISGHEGLEQINAGHCLSELSAPLT 331
Query: 146 GGLVNLKGL----------------------MKLESLNIKWCNCITDSDMKPLSGLTNLK 183
GL NLK L L L + C +T+ + + G NL
Sbjct: 332 NGLKNLKHLSVIRIDGVRVSDFILQIIGSNCKSLVELGLSKCIGVTNMGIMQVVGCCNLT 391
Query: 184 SLQISCSK-VTDSGIAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGS----LFYLNLNR 237
+L ++C + VTD+ I+ + L L LE C + L +GS L L+L
Sbjct: 392 TLDLTCCRFVTDAAISTIANSCPNLACLKLESCDMVTEI--GLYQIGSSCLMLEELDLTD 449
Query: 238 CQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLK-GLTNLESLNLDSC-GIGDEGL 293
C ++D + S+ L L LG I+D L H+ L L+L C IGD+GL
Sbjct: 450 CSGVNDIALKYLSRCSKLVRLKLGLCTNISDIGLAHIACNCPKLTELDLYRCVRIGDDGL 509
Query: 294 VNLTGLCN-LKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSL 350
LT CN L L L+ ++ +GL+ +S L L L + I+ ++ +A +S
Sbjct: 510 AALTTGCNKLAMLNLAYCNRITDAGLKCISNLGELSDFELRGLSNITSIGIKAVA-VSCK 568
Query: 351 KSLNLDAR---QITDTGLAAL---------TSLTGLTHLDLFGARITDSGAAY 391
+ NLD + ++ DTG AL S T L L + ++Y
Sbjct: 569 RLANLDLKHCEKLDDTGFRALAFYSQNLLQVSGISFTRLHLLKEKYVQQSSSY 621
Score = 41.6 bits (96), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 4/129 (3%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHL 77
+ +++L+ C+ L L LG ++D + IA L +DL + D GL L
Sbjct: 453 VNDIALKYLSRCSKLVRLKLGLCTNISDIGLAHIACNCPKLTELDLYRCVRIGDDGLAAL 512
Query: 78 KD-CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVK 135
C+ L L+ +C +I+D GL+ + L L+ R + IT+ G+KA A L
Sbjct: 513 TTGCNKLAMLNLAYCNRITDAGLKCISNLGELSDFELRGLSNITSIGIKAVAVSCKRLAN 572
Query: 136 LDLERCTRI 144
LDL+ C ++
Sbjct: 573 LDLKHCEKL 581
>gi|146104641|ref|XP_001469881.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134074251|emb|CAM72995.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 1208
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 147/294 (50%), Gaps = 17/294 (5%)
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254
SG+ L L++L L++ P+ L +L+ SL + L+RC+ E ++ L
Sbjct: 422 SGVRSLGSLKQLRCLHILHTPLHETFLQALTTCSSLECILLHRCR-GVRSLEPLRRLEHL 480
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGD-EGLVNLTGLCNLKCLELSDTQV 312
+ L+L +TD L+ L G T L L LD C I D L NL G L+ L + T +
Sbjct: 481 QSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITDLSFLANLRG--TLERLLMPRTLL 538
Query: 313 GSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
++ ++H+ L ++L S ++D + L L++L+ LNL +TD G +AL +
Sbjct: 539 SNANMQHIGLCDKLVELHLQSLRQLTD--IGVLKDLTALRVLNLSDNLVTDEGCSALHCM 596
Query: 372 TGLTHLDLFGAR-ITDSGAAYL---RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
L L+L R IT AA+ R L SL++ ++DAGV +++ + L LNL
Sbjct: 597 PSLQRLNLASCRCITSLAAAFTASGRCMHRLLSLDVSHTNISDAGVLCVQECTDLRYLNL 656
Query: 428 SQNCNLTD-KTLELISGLTGLVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESC 479
C ++ + L + ++ L LN+ +R+T R+L +NLR L+L C
Sbjct: 657 ---CGCSELRRLSWLQKMSSLRWLNLGGTRVTDEETKRYLPCTRNLRFLSLSGC 707
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 139/313 (44%), Gaps = 53/313 (16%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-GGLEHLRGLSNLTSLSFRRNN 117
L S+ L G VTD+ L+ L C+ L+ L + C QI+D L +LRG L L R
Sbjct: 480 LQSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITDLSFLANLRG--TLERLLMPR-T 536
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
++ M+ LV+L L+ +L+ L +D+ L
Sbjct: 537 LLSNANMQHIGLCDKLVELHLQ----------SLRQL----------------TDIGVLK 570
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA--------LGS 229
LT L+ L +S + VTD G + L + L LNL C C+ SL+A +
Sbjct: 571 DLTALRVLNLSDNLVTDEGCSALHCMPSLQRLNLASC----RCITSLAAAFTASGRCMHR 626
Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGI 288
L L+++ +SD G + L+ LNL G +E+ L L+ +++L LNL +
Sbjct: 627 LLSLDVSHTNISDAGVLCVQECTDLRYLNLCGCSELRR--LSWLQKMSSLRWLNLGGTRV 684
Query: 289 GDEGLVN-LTGLCNLKCLELSDTQVGSSGLRHL---SGLTNLESINLSFTGISDGSLRKL 344
DE L NL+ L LS G S +R L L LE +NL T ++D L L
Sbjct: 685 TDEETKRYLPCTRNLRFLSLS----GCSSVRSLFFAVKLPQLEYLNLESTSVADSELACL 740
Query: 345 AGLSSLKSLNLDA 357
L+ L+L++
Sbjct: 741 CHCRKLRYLSLES 753
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 99/192 (51%), Gaps = 9/192 (4%)
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSL 350
G+ +L L L+CL + T + + L+ L+ ++LE I L G+ SL L L L
Sbjct: 423 GVRSLGSLKQLRCLHILHTPLHETFLQALTTCSSLECILLHRCRGVR--SLEPLRRLEHL 480
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFK-NLRSLEICGGGL 408
+SL+L +TDT L +LT T L L L R ITD ++L N + L L + L
Sbjct: 481 QSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITD--LSFLANLRGTLERLLMPRTLL 538
Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 468
++A ++HI L L+L LTD + ++ LT L LN+S++ +T G L +
Sbjct: 539 SNANMQHIGLCDKLVELHLQSLRQLTD--IGVLKDLTALRVLNLSDNLVTDEGCSALHCM 596
Query: 469 KNLRSLTLESCK 480
+L+ L L SC+
Sbjct: 597 PSLQRLNLASCR 608
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 142/318 (44%), Gaps = 45/318 (14%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL-GSLF 231
++PL L +L+SL + VTD+ + L G +L L L+ C L L+ L G+L
Sbjct: 471 LEPLRRLEHLQSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITD-LSFLANLRGTLE 529
Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L + R LS+ + L L+L ++TD + LK LT L LNL + D
Sbjct: 530 RLLMPRTLLSNANMQHIGLCDKLVELHLQSLRQLTD--IGVLKDLTALRVLNLSDNLVTD 587
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG----LTNLESINLSFTGISDGSLRKLAG 346
EG L + +L+ L L+ + +S + + L S+++S T ISD + +
Sbjct: 588 EGCSALHCMPSLQRLNLASCRCITSLAAAFTASGRCMHRLLSLDVSHTNISDAGVLCVQE 647
Query: 347 LSSLKSLNL----DARQITDTGLAALTSLTGLTHLDLFGARITDSGAA-YLRNFKNLRSL 401
+ L+ LNL + R+ L+ L ++ L L+L G R+TD YL +NLR L
Sbjct: 648 CTDLRYLNLCGCSELRR-----LSWLQKMSSLRWLNLGGTRVTDEETKRYLPCTRNLRFL 702
Query: 402 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
+ G C+ + ++L L L LN+ ++ + +
Sbjct: 703 SLSG-------------------------CS-SVRSLFFAVKLPQLEYLNLESTSVADSE 736
Query: 462 LRHLKPLKNLRSLTLESC 479
L L + LR L+LESC
Sbjct: 737 LACLCHCRKLRYLSLESC 754
>gi|386336010|ref|YP_006032180.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
gi|334198460|gb|AEG71644.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
Length = 1053
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 172/378 (45%), Gaps = 7/378 (1%)
Query: 57 SSLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ +DLSG S V+++GL L L+SLD + +I D ++ L ++LTSL+
Sbjct: 647 PSVRRLDLSGCTGSAVSEAGLAVLARLP-LESLDLSGT-RIGDREVQALASSTSLTSLNL 704
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC-ITDSD 172
N I G +A L L++ G+ L L SL ++ I ++
Sbjct: 705 S-GNRIGDAGARALGRNTVLTALNVSANPIRDTGVQALADSRSLTSLELRGIGIGIGEAS 763
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ L+ T L+SL IS + +++ A L Q L L C +T L+ + SL
Sbjct: 764 IAALASNTVLRSLDISSNDLSEQSAAELARNQTLASLKANACGLTNGMAQQLARIRSLRT 823
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L + + D G ++ SL+ LNL N IT + L L+ L SL++ G GD G
Sbjct: 824 LEVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLCPLELSRTLTSLDVSGIGCGDRG 883
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
+ L+ L L+L +GS+G + L+ L S++L I + + LA L S
Sbjct: 884 ALLLSKNRVLTSLKLGFNGIGSAGAQRLAANRTLISLDLRGNTIDVDAAKALANTGRLTS 943
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
LN+ ++ D +AL LT LD+ R++ A L L SL I + G
Sbjct: 944 LNVSDCKLDDAAASALAESLTLTSLDVSVNRLSGRAAQALAGNATLTSLNISHNHIGPDG 1003
Query: 413 VKHIKDLSSLTLLNLSQN 430
+ + + SLT+L+ N
Sbjct: 1004 ARALAESPSLTVLDARAN 1021
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 99/355 (27%), Positives = 155/355 (43%), Gaps = 7/355 (1%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ D+ + +AS +SL S++LSG+ + D+G L + L +L+ + I D G++ L
Sbjct: 685 IGDREVQALASS-TSLTSLNLSGNRIGDAGARALGRNTVLTALNVS-ANPIRDTGVQALA 742
Query: 104 GLSNLTSLSFRRNN-AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
+LTSL R I + A A L LD+ L L SL
Sbjct: 743 DSRSLTSLELRGIGIGIGEASIAALASNTVLRSLDISSNDLSEQSAAELARNQTLASLKA 802
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
C +T+ + L+ + +L++L++ + + D+G+ + L LNL P+T L
Sbjct: 803 NACG-LTNGMAQQLARIRSLRTLEVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLC 861
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
L +L L+++ D G SK L L LGFN I L L SL+
Sbjct: 862 PLELSRTLTSLDVSGIGCGDRGALLLSKNRVLTSLKLGFNGIGSAGAQRLAANRTLISLD 921
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
L I + L L L +SD ++ + L+ L S+++S +S + +
Sbjct: 922 LRGNTIDVDAAKALANTGRLTSLNVSDCKLDDAAASALAESLTLTSLDVSVNRLSGRAAQ 981
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
LAG ++L SLN+ I G AL LT LD AR D G A R +N
Sbjct: 982 ALAGNATLTSLNISHNHIGPDGARALAESPSLTVLD---ARANDIGEAGARALEN 1033
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 135/315 (42%), Gaps = 14/315 (4%)
Query: 23 VSLEAFRDCALQDLC----------LGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDS 72
VS RD +Q L G G+ + + +AS + L S+D+S +D+++
Sbjct: 728 VSANPIRDTGVQALADSRSLTSLELRGIGIGIGEASIAALASN-TVLRSLDISSNDLSEQ 786
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132
L L SL N C +++G + L + +L +L +N+I G+ A A +
Sbjct: 787 SAAELARNQTLASLKANAC-GLTNGMAQQLARIRSLRTLEVG-SNSIGDTGVLAIARNAS 844
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
L L+L GL L+ L SL++ C D LS L SL++ + +
Sbjct: 845 LRTLNLSHNPITLQGLCPLELSRTLTSLDVSGIGC-GDRGALLLSKNRVLTSLKLGFNGI 903
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
+G L + L L+L G + +L+ G L LN++ C+L D ++
Sbjct: 904 GSAGAQRLAANRTLISLDLRGNTIDVDAAKALANTGRLTSLNVSDCKLDDAAASALAESL 963
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
+L L++ N ++ L G L SLN+ IG +G L +L L+ +
Sbjct: 964 TLTSLDVSVNRLSGRAAQALAGNATLTSLNISHNHIGPDGARALAESPSLTVLDARANDI 1023
Query: 313 GSSGLRHLSGLTNLE 327
G +G R L T ++
Sbjct: 1024 GEAGARALENNTRMQ 1038
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 100/253 (39%), Gaps = 28/253 (11%)
Query: 200 LKGLQKLTLLNLEGCPVT------AACLDSLSALGSLFYL--------NLNRCQLSDDGC 245
LKG LTL +L+ P T +AC S + G++ YL N+ + DDG
Sbjct: 113 LKG--NLTLTDLKALPATLRHLDLSACTGSAKSSGAIAYLAGLPLESLNVAGADIGDDGA 170
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG---LCNL 302
+ SLK LN I L L SL+L GIGDEG L G L NL
Sbjct: 171 RLLAANPSLKTLNAANGGIGAAGARALAESPVLTSLDLTQNGIGDEGARALAGSRSLTNL 230
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L T VG+ L LT L+ NL +D L + + A +IT
Sbjct: 231 AVLNCLVTDVGAQALAGNRTLTALDLGNLITE--TDNELEQ-------AGYDRTANEITA 281
Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
G AL LT L + G D G L + L SL + +T A + L
Sbjct: 282 QGAWALAQNRSLTSLSIQGNLCGDGGVQALARNRTLTSLNVAYTDMTPASATELARNPVL 341
Query: 423 TLLNLSQNCNLTD 435
T L++ N L D
Sbjct: 342 TSLSVRWNYGLGD 354
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 107/381 (28%), Positives = 150/381 (39%), Gaps = 43/381 (11%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGG--LEHLRGLSNLTSLSFRRNNAITAQ 122
S D+G H D + Q + S G L L GL++L L N ++A
Sbjct: 14 SAPATPDTGARHGPDQTGEQPA---YAPARSSAGVALSPLGGLASL-RLDAASANTVSAP 69
Query: 123 GMKAFAGLINLVKLDLERCTR--IHG--GLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ A + L+R T +H L L L SL +K +TD P +
Sbjct: 70 RILPPAPCHDPRAAALQRVTHLSVHDRRALSELHNYPNLTSLQLKGNLTLTDLKALPAT- 128
Query: 179 LTNLKSLQISC---SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ L +S S + IAYL GL L LN+ G + L+A SL LN
Sbjct: 129 ---LRHLDLSACTGSAKSSGAIAYLAGL-PLESLNVAGADIGDDGARLLAANPSLKTLNA 184
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG---LTNLESLNLDSCGIGDEG 292
+ G ++ L L+L N I DE L G LTNL LN C + D G
Sbjct: 185 ANGGIGAAGARALAESPVLTSLDLTQNGIGDEGARALAGSRSLTNLAVLN---CLVTDVG 241
Query: 293 LVNLTGLCNLKCLEL------SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
L G L L+L +D ++ +G + + I+ LA
Sbjct: 242 AQALAGNRTLTALDLGNLITETDNELEQAG------------YDRTANEITAQGAWALAQ 289
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI-CG 405
SL SL++ D G+ AL LT L++ +T + A L L SL +
Sbjct: 290 NRSLTSLSIQGNLCGDGGVQALARNRTLTSLNVAYTDMTPASATELARNPVLTSLSVRWN 349
Query: 406 GGLTDAGVKHIKDLSSLTLLN 426
GL DAGV + SLTLL+
Sbjct: 350 YGLGDAGVVELAKSPSLTLLD 370
>gi|430746594|ref|YP_007205723.1| hypothetical protein Sinac_5912 [Singulisphaera acidiphila DSM
18658]
gi|430018314|gb|AGA30028.1| hypothetical protein Sinac_5912 [Singulisphaera acidiphila DSM
18658]
Length = 170
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 28/167 (16%)
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
LK L + +T+VG +G+ L+ + ++L T I+D L+ L G+ SL L+L A IT
Sbjct: 23 LKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLRATGIT 82
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421
D GLA L + L LDL +I+D AG++H+K L
Sbjct: 83 DAGLAHLAGMDRLERLDLGYTKISD------------------------AGIEHLKGLKG 118
Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 468
L ++ N+TD+++ +I G L ++N S+IT AG L+ +
Sbjct: 119 LDIV----ETNVTDRSIPIIGGFERLEAINPRGSKITEAGEEQLRKM 161
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 89/170 (52%), Gaps = 8/170 (4%)
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
NL+GCP LSA+ L L + ++ D G + + + L+L +ITD L
Sbjct: 6 NLQGCPNANGI--RLSAV-VLKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGL 62
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
LKG+ +L L+L + GI D GL +L G+ L+ L+L T++ +G+ HL GL L+ +
Sbjct: 63 KPLKGMKSLVHLSLRATGITDAGLAHLAGMDRLERLDLGYTKISDAGIEHLKGLKGLDIV 122
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
T ++D S+ + G L+++N +IT+ G L + L LD+
Sbjct: 123 E---TNVTDRSIPIIGGFERLEAINPRGSKITEAGEEQLRKM--LPKLDI 167
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 77/142 (54%), Gaps = 3/142 (2%)
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L+ L +++ +GD G+ L + L+L T++ +GL+ L G+ +L ++L TGI+
Sbjct: 23 LKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLRATGIT 82
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
D L LAG+ L+ L+L +I+D G+ L L G LD+ +TD + F+
Sbjct: 83 DAGLAHLAGMDRLERLDLGYTKISDAGIEHLKGLKG---LDIVETNVTDRSIPIIGGFER 139
Query: 398 LRSLEICGGGLTDAGVKHIKDL 419
L ++ G +T+AG + ++ +
Sbjct: 140 LEAINPRGSKITEAGEEQLRKM 161
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 71/139 (51%), Gaps = 3/139 (2%)
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
LK L I ++V D+G+A L + L+L G +T A L L + SL +L+L ++
Sbjct: 23 LKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLRATGIT 82
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
D G + + L+ L+LG+ +I+D + HLKG L+ L++ + D + + G
Sbjct: 83 DAGLAHLAGMDRLERLDLGYTKISDAGIEHLKG---LKGLDIVETNVTDRSIPIIGGFER 139
Query: 302 LKCLELSDTQVGSSGLRHL 320
L+ + +++ +G L
Sbjct: 140 LEAINPRGSKITEAGEEQL 158
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 25/122 (20%)
Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409
LK L ++ ++ D G+A L S G+ LDL G +ITD+G L+ K+L L + G+T
Sbjct: 23 LKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLRATGIT 82
Query: 410 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 469
DAG+ H+ +G+ L L++ ++I+ AG+ HLK LK
Sbjct: 83 DAGLAHL-------------------------AGMDRLERLDLGYTKISDAGIEHLKGLK 117
Query: 470 NL 471
L
Sbjct: 118 GL 119
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 3/125 (2%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+ D+ M L+ + L + +K+TD+G+ LKG++ L L+L +T A L L+ +
Sbjct: 33 VGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLRATGITDAGLAHLAGM 92
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
L L+L ++SD G E LK L++ +TD + + G LE++N
Sbjct: 93 DRLERLDLGYTKISDAGIEHLK---GLKGLDIVETNVTDRSIPIIGGFERLEAINPRGSK 149
Query: 288 IGDEG 292
I + G
Sbjct: 150 ITEAG 154
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 14/160 (8%)
Query: 77 LKDCSNLQSLDFNFCI---------QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
L+ C N + + + ++ D G+ L + L IT G+K
Sbjct: 7 LQGCPNANGIRLSAVVLKRLAIENTRVGDAGMAQLASHPGIAELDLH-GTKITDAGLKPL 65
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
G+ +LV L L GL +L G+ +LE L++ + I+D+ ++ L G LK L I
Sbjct: 66 KGMKSLVHLSLRATGITDAGLAHLAGMDRLERLDLGYTK-ISDAGIEHLKG---LKGLDI 121
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+ VTD I + G ++L +N G +T A + L +
Sbjct: 122 VETNVTDRSIPIIGGFERLEAINPRGSKITEAGEEQLRKM 161
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 4/136 (2%)
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N + GM A + +LDL GL LKG+ L L+++ ITD+ +
Sbjct: 30 NTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLR-ATGITDAGLAH 88
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+G+ L+ L + +K++D+GI +LKGL+ L ++ VT + + L +N
Sbjct: 89 LAGMDRLERLDLGYTKISDAGIEHLKGLKGLDIVETN---VTDRSIPIIGGFERLEAINP 145
Query: 236 NRCQLSDDGCEKFSKI 251
++++ G E+ K+
Sbjct: 146 RGSKITEAGEEQLRKM 161
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 14/81 (17%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL-------SNLTS 110
SL+ + L + +TD+GL HL L+ LD + +ISD G+EHL+GL +N+T
Sbjct: 70 SLVHLSLRATGITDAGLAHLAGMDRLERLDLGYT-KISDAGIEHLKGLKGLDIVETNVTD 128
Query: 111 LS------FRRNNAITAQGMK 125
S F R AI +G K
Sbjct: 129 RSIPIIGGFERLEAINPRGSK 149
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 31/158 (19%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
V D M +AS + +DL G+ +TD+ GL+ L+
Sbjct: 33 VGDAGMAQLASH-PGIAELDLHGTKITDA-------------------------GLKPLK 66
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
G+ +L LS R IT G+ AG+ L +LDL G+ +LKG L+ L+I
Sbjct: 67 GMKSLVHLSL-RATGITDAGLAHLAGMDRLERLDLGYTKISDAGIEHLKG---LKGLDIV 122
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
N +TD + + G L+++ SK+T++G L+
Sbjct: 123 ETN-VTDRSIPIIGGFERLEAINPRGSKITEAGEEQLR 159
Score = 39.7 bits (91), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 25/117 (21%)
Query: 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
L L + R+ D+G A L + + L++ G +TDAG+K +K
Sbjct: 23 LKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLK---------------- 66
Query: 434 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 490
G+ LV L++ + IT AGL HL + L L L K++ I+ L+
Sbjct: 67 ---------GMKSLVHLSLRATGITDAGLAHLAGMDRLERLDLGYTKISDAGIEHLK 114
>gi|357511817|ref|XP_003626197.1| F-box/LRR-repeat protein [Medicago truncatula]
gi|355501212|gb|AES82415.1| F-box/LRR-repeat protein [Medicago truncatula]
Length = 605
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 122/433 (28%), Positives = 204/433 (47%), Gaps = 59/433 (13%)
Query: 69 VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLS---NLTSLSFRRNNAITAQGM 124
VTD GL + CS L+ L +C++ISD G++ L N +S+ + +T + +
Sbjct: 197 VTDIGLAKIAVGCSKLEKLSLKWCLEISDLGIDLLSKKCFDLNFLDVSYLK---VTNESL 253
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNL-KGLMKLESLNIKWCNCITDSD-MKPLSGLTN 181
++ A L+ L + C + GL L KG L+++++ CNC++ S + +SG
Sbjct: 254 RSIASLLKLEVFIMVGCYLVDDAGLQFLEKGCPLLKAIDVSRCNCVSPSGLLSVISGHEG 313
Query: 182 LKSLQI-SC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRC 238
L+ + C S+++ LK L+ L+++ ++G V+ L + S SL L L++C
Sbjct: 314 LEQINAGHCLSELSAPLTNGLKNLKHLSVIRIDGVRVSDFILQIIGSNCKSLVELGLSKC 373
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT 297
+ V N+G ++ G NL +L+L C + D + +
Sbjct: 374 ---------------IGVTNMGIMQVV--------GCCNLTTLDLTCCRFVTDAAISTIA 410
Query: 298 GLC-NLKCLEL-SDTQVGSSGLRHL-SGLTNLESINLS-FTGISDGSLRKLAGLSSLKSL 353
C NL CL+L S V GL + S LE ++L+ +G++D +L+ L+ S L L
Sbjct: 411 NSCPNLACLKLESCDMVTEIGLYQIGSSCLMLEELDLTDCSGVNDIALKYLSRCSKLVRL 470
Query: 354 NLD-ARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKN---LRSLEICGGG 407
L I+D GLA + + LT LDL+ RI D G A L N + +L C
Sbjct: 471 KLGLCTNISDIGLAHIACNCPKLTELDLYRCVRIGDDGLAALTTGCNKLAMLNLAYC-NR 529
Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 467
+TDAG+K I +L L+ L N+T G+ ++ VS R+ + L+H +
Sbjct: 530 ITDAGLKCISNLGELSDFELRGLSNITS---------IGIKAVAVSCKRLANLDLKHCEK 580
Query: 468 LKN--LRSLTLES 478
L + R+L S
Sbjct: 581 LDDTGFRALAFYS 593
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 85/178 (47%), Gaps = 7/178 (3%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEH 101
V D + IA+ +L + L D VT+ GL + C L+ LD C ++D L++
Sbjct: 401 VTDAAISTIANSCPNLACLKLESCDMVTEIGLYQIGSSCLMLEELDLTDCSGVNDIALKY 460
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HGGLVNLK-GLMKLE 158
L S L L I+ G+ A L +LDL RC RI GL L G KL
Sbjct: 461 LSRCSKLVRLKLGLCTNISDIGLAHIACNCPKLTELDLYRCVRIGDDGLAALTTGCNKLA 520
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGI-AYLKGLQKLTLLNLEGC 214
LN+ +CN ITD+ +K +S L L ++ S +T GI A ++L L+L+ C
Sbjct: 521 MLNLAYCNRITDAGLKCISNLGELSDFELRGLSNITSIGIKAVAVSCKRLANLDLKHC 578
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 99/382 (25%), Positives = 164/382 (42%), Gaps = 48/382 (12%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L+ L L ++D +D+++ + L +D+S VT+ L + L+ C
Sbjct: 212 LEKLSLKWCLEISDLGIDLLSKKCFDLNFLDVSYLKVTNESLRSIASLLKLEVFIMVGCY 271
Query: 93 QISDGGLEHL-RGLSNLTSLSFRRNNAITAQG-MKAFAGLINLVKLDLERC-----TRIH 145
+ D GL+ L +G L ++ R N ++ G + +G L +++ C +
Sbjct: 272 LVDDAGLQFLEKGCPLLKAIDVSRCNCVSPSGLLSVISGHEGLEQINAGHCLSELSAPLT 331
Query: 146 GGLVNLKGL----------------------MKLESLNIKWCNCITDSDMKPLSGLTNLK 183
GL NLK L L L + C +T+ + + G NL
Sbjct: 332 NGLKNLKHLSVIRIDGVRVSDFILQIIGSNCKSLVELGLSKCIGVTNMGIMQVVGCCNLT 391
Query: 184 SLQISCSK-VTDSGIAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGS----LFYLNLNR 237
+L ++C + VTD+ I+ + L L LE C + L +GS L L+L
Sbjct: 392 TLDLTCCRFVTDAAISTIANSCPNLACLKLESCDMVTEI--GLYQIGSSCLMLEELDLTD 449
Query: 238 CQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLK-GLTNLESLNLDSC-GIGDEGL 293
C ++D + S+ L L LG I+D L H+ L L+L C IGD+GL
Sbjct: 450 CSGVNDIALKYLSRCSKLVRLKLGLCTNISDIGLAHIACNCPKLTELDLYRCVRIGDDGL 509
Query: 294 VNLTGLCN-LKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSL 350
LT CN L L L+ ++ +GL+ +S L L L + I+ ++ +A +S
Sbjct: 510 AALTTGCNKLAMLNLAYCNRITDAGLKCISNLGELSDFELRGLSNITSIGIKAVA-VSCK 568
Query: 351 KSLNLDAR---QITDTGLAALT 369
+ NLD + ++ DTG AL
Sbjct: 569 RLANLDLKHCEKLDDTGFRALA 590
Score = 41.6 bits (96), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 4/129 (3%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHL 77
+ +++L+ C+ L L LG ++D + IA L +DL + D GL L
Sbjct: 453 VNDIALKYLSRCSKLVRLKLGLCTNISDIGLAHIACNCPKLTELDLYRCVRIGDDGLAAL 512
Query: 78 KD-CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVK 135
C+ L L+ +C +I+D GL+ + L L+ R + IT+ G+KA A L
Sbjct: 513 TTGCNKLAMLNLAYCNRITDAGLKCISNLGELSDFELRGLSNITSIGIKAVAVSCKRLAN 572
Query: 136 LDLERCTRI 144
LDL+ C ++
Sbjct: 573 LDLKHCEKL 581
>gi|298360724|gb|ADI77941.1| truncated internalin A [Listeria monocytogenes]
Length = 403
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 106/322 (32%), Positives = 164/322 (50%), Gaps = 35/322 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 366
Query: 354 NLDARQITD-TGLAALTSLTGL 374
+++D + LA LT++ L
Sbjct: 367 FFYNNKVSDVSSLANLTNINWL 388
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 280 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
L L + I D + L NLT NL LELS + S + LSGLT+L+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQV 197
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 399 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 459 SAGLRHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|354476331|ref|XP_003500378.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cricetulus griseus]
Length = 340
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 148/272 (54%), Gaps = 25/272 (9%)
Query: 239 QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLV 294
Q++D + ++ + L+VL LG + IT+ L+ + GL L+SLNL SC + D G+
Sbjct: 72 QITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIG 131
Query: 295 NLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRK 343
+L G+ L+ L L D Q + L+H+S GLT L +NLSF G ISD L
Sbjct: 132 HLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLH 191
Query: 344 LAGLSSLKSLNLDARQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLR 399
L+ + SL+ D I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+
Sbjct: 192 LSHMGSLRLPTCD--NISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLK 248
Query: 400 SLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SR 456
SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +R
Sbjct: 249 SLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTR 308
Query: 457 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
IT GL + L L+ L L ++T ++ R
Sbjct: 309 ITKRGLERITQLPCLKVLNLGLWQMTDSEKVR 340
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 128/238 (53%), Gaps = 38/238 (15%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQIS-CSKVTDSGIAYL-KG 202
GL +L+SLN++ C ++D + L+G+T L+ L + C K+TD + ++ +G
Sbjct: 110 GLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRG 169
Query: 203 LQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LN 258
L L LLNL C ++ A L LS +GS L L C +SD G + +GSL++ L+
Sbjct: 170 LTGLRLLNLSFCGGISDAGLLHLSHMGS---LRLPTCDNISDTGIMHLA-MGSLRLSGLD 225
Query: 259 LGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL----VNLTGLCNL---KCLELSD 309
+ F +++ D+ L ++ +GL L+SL+L SC I D+G+ + GL L +C+ ++D
Sbjct: 226 VSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITD 285
Query: 310 TQVGSSGL----RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
GL HLS LT ++ T I+ L ++ L LK LNL Q+TD+
Sbjct: 286 -----KGLELIAEHLSQLTGIDLYG--CTRITKRGLERITQLPCLKVLNLGLWQMTDS 336
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 138/287 (48%), Gaps = 38/287 (13%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA L ++L G S++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 73 ITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGH 132
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL------KGLM 155
L G++ A G + L +L L+ C + L +L +GL
Sbjct: 133 LAGMTR-----------------SAAEGCLGLEQLTLQDCQK----LTDLSLKHISRGLT 171
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
L LN+ +C I+D+ + LS + +L+ +C ++D+GI +L G +L+ L++ C
Sbjct: 172 GLRLLNLSFCGGISDAGLLHLSHMGSLR--LPTCDNISDTGIMHLAMGSLRLSGLDVSFC 229
Query: 215 -PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLV 270
V L ++ L L L+L C +SDDG + + + L+ LN+G ITD+ L
Sbjct: 230 DKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLE 289
Query: 271 HL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSS 315
+ + L+ L ++L C I GL +T L LK L L Q+ S
Sbjct: 290 LIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 336
>gi|290980573|ref|XP_002673006.1| predicted protein [Naegleria gruberi]
gi|284086587|gb|EFC40262.1| predicted protein [Naegleria gruberi]
Length = 361
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 118/246 (47%), Gaps = 5/246 (2%)
Query: 246 EKFSKIGSLKVLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
+ ++I SLK +N I D E L+G+ +L+ + + G +G+ + L L
Sbjct: 82 QYLNRIVSLKTVNSFDGSIIDNVELCEILQGMKDLKEVWIYKQLKGVKGIKKIGSLKQLT 141
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
L++S +G G++ L+ L+ L + + I D ++ ++ + L L+L +I D
Sbjct: 142 ILDVSYNDIGYGGVKWLTQLSQLTELRIGNNSIFDDDIKMISEMKQLTKLDLSNCRIMD- 200
Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
G+ L+ L LT L L G R+TD + N K L L I L G K I +++ LT
Sbjct: 201 GVQYLSKLENLTSLRLCGNRLTDERVESISNLKQLTELYIGENQLGTEGAKSIGNMTQLT 260
Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 483
LN+ QN + ++ + L L LN+S ++I G+ + + L LT+ K++
Sbjct: 261 RLNIQQNR--ISQGVKYLEKLDRLTDLNISKNKIGDTGVIIISEMNQLTKLTIRDNKISE 318
Query: 484 NDIKRL 489
K L
Sbjct: 319 EGAKTL 324
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 135/285 (47%), Gaps = 13/285 (4%)
Query: 149 VNLKGLMKLESLN----IKWCNCITDSDM------KPLSGLTNLKSLQISCSKVTDSGIA 198
+NLK L K + LN +K N S + + L G+ +LK + I GI
Sbjct: 73 INLKSLAKSQYLNRIVSLKTVNSFDGSIIDNVELCEILQGMKDLKEVWIYKQLKGVKGIK 132
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
+ L++LT+L++ + + L+ L L L + + DD + S++ L L+
Sbjct: 133 KIGSLKQLTILDVSYNDIGYGGVKWLTQLSQLTELRIGNNSIFDDDIKMISEMKQLTKLD 192
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
L I D + +L L NL SL L + DE + +++ L L L + + Q+G+ G +
Sbjct: 193 LSNCRIMD-GVQYLSKLENLTSLRLCGNRLTDERVESISNLKQLTELYIGENQLGTEGAK 251
Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
+ +T L +N+ IS G ++ L L L LN+ +I DTG+ ++ + LT L
Sbjct: 252 SIGNMTQLTRLNIQQNRISQG-VKYLEKLDRLTDLNISKNKIGDTGVIIISEMNQLTKLT 310
Query: 379 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI-KDLSSL 422
+ +I++ GA L + L L+I +++ + K++ SL
Sbjct: 311 IRDNKISEEGAKTLGLLQKLTYLDISDNSVSNVTANSMQKNMKSL 355
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 114/230 (49%), Gaps = 4/230 (1%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+K + L L L +S + + G+ +L L +LT L + + + +S + L
Sbjct: 131 IKKIGSLKQLTILDVSYNDIGYGGVKWLTQLSQLTELRIGNNSIFDDDIKMISEMKQLTK 190
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L+L+ C++ D G + SK+ +L L L N +TDE + + L L L + +G EG
Sbjct: 191 LDLSNCRIMD-GVQYLSKLENLTSLRLCGNRLTDERVESISNLKQLTELYIGENQLGTEG 249
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
++ + L L + ++ S G+++L L L +N+S I D + ++ ++ L
Sbjct: 250 AKSIGNMTQLTRLNIQQNRI-SQGVKYLEKLDRLTDLNISKNKIGDTGVIIISEMNQLTK 308
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
L + +I++ G L L LT+LD+ +++ A ++ KN++SL+
Sbjct: 309 LTIRDNKISEEGAKTLGLLQKLTYLDISDNSVSNVTANSMQ--KNMKSLK 356
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 11/206 (5%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I GG++ L LS LT L NN+I +K + + L KLDL C RI G+ L
Sbjct: 150 IGYGGVKWLTQLSQLTELRIG-NNSIFDDDIKMISEMKQLTKLDLSNC-RIMDGVQYLSK 207
Query: 154 LMKLESLNIKWC-NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L L SL + C N +TD ++ +S L L L I +++ G + + +LT LN++
Sbjct: 208 LENLTSLRL--CGNRLTDERVESISNLKQLTELYIGENQLGTEGAKSIGNMTQLTRLNIQ 265
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
++ + L L L LN+++ ++ D G S++ L L + N+I++E L
Sbjct: 266 QNRISQG-VKYLEKLDRLTDLNISKNKIGDTGVIIISEMNQLTKLTIRDNKISEEGAKTL 324
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTG 298
L L L+ I D + N+T
Sbjct: 325 GLLQKLTYLD-----ISDNSVSNVTA 345
>gi|196229410|ref|ZP_03128275.1| hypothetical protein CfE428DRAFT_1440 [Chthoniobacter flavus
Ellin428]
gi|196226642|gb|EDY21147.1| hypothetical protein CfE428DRAFT_1440 [Chthoniobacter flavus
Ellin428]
Length = 299
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 107/222 (48%), Gaps = 11/222 (4%)
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
D+ G+ D + GL +LK L + +GL+ L+GL LE ++ + SD +R
Sbjct: 57 DNKGLTDADYRQIRGLDHLKMLGCG-AGLDDAGLKALAGLPALEQLSTNGMTASDEGVRT 115
Query: 344 LAGLSSLKSLNL--DARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRS 400
LA +L+S+ + T TGLAAL ++ L L + G+ D G A + +L+
Sbjct: 116 LAACKALRSIAFFHPGKSFTGTGLAALAAIPNLERLTVAGSTEFGDDGLAAVAQIAHLKE 175
Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQN------CNLTDKTLELISGLTGLVSLNVSN 454
G T G++ ++ L L L + Q ++D T+ ++G+ L L++
Sbjct: 176 FRTWHAGATVEGIRKLQALKELKSLTIGQRLANKPPVMVSDDTVAAVAGMPSLEMLSLQE 235
Query: 455 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 496
+R+T L LK L NL+ LTL+ + I L+ ++LP
Sbjct: 236 ARLTLPALGKLKQLPNLKRLTLDGIDIPEAQIAELR-QELPK 276
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 101/254 (39%), Gaps = 18/254 (7%)
Query: 52 IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111
A + + ++ G+ VT++ + L F ++D +RGL +L L
Sbjct: 26 FAGDPAVVAALQAKGAQVTET-------AGEITGLAFKDNKGLTDADYRQIRGLDHLKML 78
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI-KWCNCITD 170
+ G+KA AGL L +L T G+ L L S+ T
Sbjct: 79 GC--GAGLDDAGLKALAGLPALEQLSTNGMTASDEGVRTLAACKALRSIAFFHPGKSFTG 136
Query: 171 SDMKPLSGLTNLKSLQISCS-KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
+ + L+ + NL+ L ++ S + D G+A + + L T + L AL
Sbjct: 137 TGLAALAAIPNLERLTVAGSTEFGDDGLAAVAQIAHLKEFRTWHAGATVEGIRKLQALKE 196
Query: 230 LFYLNLNR-------CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
L L + + +SDD + + SL++L+L +T L LK L NL+ L
Sbjct: 197 LKSLTIGQRLANKPPVMVSDDTVAAVAGMPSLEMLSLQEARLTLPALGKLKQLPNLKRLT 256
Query: 283 LDSCGIGDEGLVNL 296
LD I + + L
Sbjct: 257 LDGIDIPEAQIAEL 270
>gi|297808737|ref|XP_002872252.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]
gi|297318089|gb|EFH48511.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]
Length = 642
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 136/464 (29%), Positives = 227/464 (48%), Gaps = 65/464 (14%)
Query: 69 VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHL----RGLSNLTSLSFRRNNAITAQG 123
++D GL + CSNL + +C++ISD G++ L +GL +L +S+ + IT
Sbjct: 159 LSDVGLARIVVGCSNLNKISLKWCMEISDLGIDLLCKMCKGLKSL-DVSYLK---ITNDS 214
Query: 124 MKAFAGLINLVKLDLERCTRI-HGGLVNLK-GLMKLESLNIKWCNCITDSDMKPL-SGLT 180
+++ A L+ L LD+ C I GL L+ G L+ +++ C ++ S + + G
Sbjct: 215 IRSIALLLKLEVLDMVSCPLIDDAGLQFLENGSPSLQEVDVTRCERVSLSGLISIVRGHP 274
Query: 181 NLKSLQIS--CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNR 237
+++ L+ S S+V+ S + Y+K L+ L + ++G V+ + L +L S+ SL + L+R
Sbjct: 275 DIQLLKASHCVSEVSGSFLQYIKALKHLKTIWIDGAHVSDSSLVTLSSSCRSLVEIGLSR 334
Query: 238 C-QLSDDGCEKFSK-IGSLKVLNL---GFNEITDECLVHL-KGLTNLESLNLDSCG-IGD 290
C ++D G F++ +LK LNL GF +TD + + + NLE+L L+SC I +
Sbjct: 335 CVDVTDIGMMGFARNCLNLKTLNLACCGF--VTDVAISAVAQSCRNLETLKLESCHLITE 392
Query: 291 EGLVNLTGLCN-LKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGL 347
+GL +L L+ L+L+D V GL ++S +NL+ + L T ISD + +
Sbjct: 393 KGLQSLGCYSKLLQELDLTDCYGVNDRGLEYISKCSNLQRLKLGLCTNISDKGIFHIGSK 452
Query: 348 SSLKSLNLDARQIT---DTGLAALTS-LTGLTHLDL-FGARITDSGAAYLRNFKNLRSLE 402
S K L LD + D GLAAL+ L L L + +TD+G +R + L LE
Sbjct: 453 CS-KLLELDLYRCAGFGDDGLAALSRGCKSLNRLILSYCCELTDTGVEQIRQLELLSHLE 511
Query: 403 ICG-GGLTDAGVKHIK-DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
+ G +T G+ I L L+L N+ D SG L +
Sbjct: 512 LRGLKNITGVGLAAIACGCKKLGYLDLKLCENIDD------SGFWALAYFS--------- 556
Query: 461 GLRHLKPLKNLRSLTLESCKVT-------ANDIKRLQSRDLPNL 497
KNLR + L +C V+ +++ R+Q DL +L
Sbjct: 557 --------KNLRQINLCNCSVSDTALCMLMSNLSRVQDVDLVHL 592
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 115/465 (24%), Positives = 209/465 (44%), Gaps = 80/465 (17%)
Query: 82 NLQSLDFNFCIQISDG-----GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-LVK 135
NL SLD + C ++ D L+ + SL+ R+ A+ A+G++ A + + L +
Sbjct: 66 NLSSLDLSVCPKLDDDVVLRLALDGTVSTLGIKSLNLSRSTAVRARGLETLARMCHALER 125
Query: 136 LDLERCT----RIHGGLVNLKGLMKLE-----------------------SLNIKWCNCI 168
+D+ C R L + GL +L+ +++KWC I
Sbjct: 126 VDVSHCWGFGDREAAALSSAVGLRELKMDKCLSLSDVGLARIVVGCSNLNKISLKWCMEI 185
Query: 169 TDSDMKPLSGLTN-LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLS- 225
+D + L + LKSL +S K+T+ I + L KL +L++ CP + A L L
Sbjct: 186 SDLGIDLLCKMCKGLKSLDVSYLKITNDSIRSIALLLKLEVLDMVSCPLIDDAGLQFLEN 245
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL-----------NLGFNEITDECLVHLKG 274
SL +++ R CE+ S G + ++ + +E++ L ++K
Sbjct: 246 GSPSLQEVDVTR-------CERVSLSGLISIVRGHPDIQLLKASHCVSEVSGSFLQYIKA 298
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCN-------LKCLELSDTQVGSSGLRHLSGLTNLE 327
L +L+++ +D + D LV L+ C +C++++D +G G NL+
Sbjct: 299 LKHLKTIWIDGAHVSDSSLVTLSSSCRSLVEIGLSRCVDVTD--IGMMGFAR--NCLNLK 354
Query: 328 SINLSFTG-ISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLTGLTH----LDLF 380
++NL+ G ++D ++ +A +L++L L++ IT+ GL +L + L D +
Sbjct: 355 TLNLACCGFVTDVAISAVAQSCRNLETLKLESCHLITEKGLQSLGCYSKLLQELDLTDCY 414
Query: 381 GARITDSGAAYLRNFKNLRSLE--ICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKT 437
G + D G Y+ NL+ L+ +C ++D G+ HI S L L+L + D
Sbjct: 415 G--VNDRGLEYISKCSNLQRLKLGLC-TNISDKGIFHIGSKCSKLLELDLYRCAGFGDDG 471
Query: 438 LELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 480
L +S G L L +S +T G+ ++ L+ L L L K
Sbjct: 472 LAALSRGCKSLNRLILSYCCELTDTGVEQIRQLELLSHLELRGLK 516
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 116/419 (27%), Positives = 180/419 (42%), Gaps = 78/419 (18%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
++D +D++ L S+D+S +T+ + + L+ LD C I D GL+ L
Sbjct: 185 ISDLGIDLLCKMCKGLKSLDVSYLKITNDSIRSIALLLKLEVLDMVSCPLIDDAGLQFLE 244
Query: 104 -GLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERC-TRIHGGLVN-LKGLMKLES 159
G +L + R ++ G+ + G ++ L C + + G + +K L L++
Sbjct: 245 NGSPSLQEVDVTRCERVSLSGLISIVRGHPDIQLLKASHCVSEVSGSFLQYIKALKHLKT 304
Query: 160 LNIKWCNCITDSDMKPLS---------GLT------------------NLKSLQISCSK- 191
+ I + ++DS + LS GL+ NLK+L ++C
Sbjct: 305 IWIDGAH-VSDSSLVTLSSSCRSLVEIGLSRCVDVTDIGMMGFARNCLNLKTLNLACCGF 363
Query: 192 VTDSGI-AYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFY-LNLNRCQ-LSDDGCEK 247
VTD I A + + L L LE C +T L SL L L+L C ++D G E
Sbjct: 364 VTDVAISAVAQSCRNLETLKLESCHLITEKGLQSLGCYSKLLQELDLTDCYGVNDRGLEY 423
Query: 248 FSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCN--- 301
SK +L+ L LG I+D+ + H+ + L L+L C G GD+GL L+ C
Sbjct: 424 ISKCSNLQRLKLGLCTNISDKGIFHIGSKCSKLLELDLYRCAGFGDDGLAALSRGCKSLN 483
Query: 302 ----LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
C EL+DT G +R L L++LE L GL
Sbjct: 484 RLILSYCCELTDT--GVEQIRQLELLSHLE----------------LRGL---------- 515
Query: 358 RQITDTGLAALT-SLTGLTHLDL-FGARITDSGAAYLRNF-KNLRSLEICGGGLTDAGV 413
+ IT GLAA+ L +LDL I DSG L F KNLR + +C ++D +
Sbjct: 516 KNITGVGLAAIACGCKKLGYLDLKLCENIDDSGFWALAYFSKNLRQINLCNCSVSDTAL 574
>gi|156403875|ref|XP_001640133.1| predicted protein [Nematostella vectensis]
gi|156227266|gb|EDO48070.1| predicted protein [Nematostella vectensis]
Length = 779
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 138/500 (27%), Positives = 228/500 (45%), Gaps = 74/500 (14%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL- 77
LT SL+ C LQDL L + GV D+ M IA +SLL ++LS ++DS L +L
Sbjct: 310 LTRESLKIIGQCRNLQDLNLSEVKGVTDEVMKDIAMGCTSLLYLNLSSCLISDSTLRYLA 369
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFAGL---- 130
+ C+N+Q L +C + S+ GL +L +G + L IT G K F G+
Sbjct: 370 RYCTNMQYLSLAYCTKFSNKGLSYLANGKGCHKVIYLDLSGCEQITDDGYK-FVGMGCSS 428
Query: 131 INLVKL-DLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
+N + L DL R I + L + LN + ++D+ K L+ L L+I
Sbjct: 429 LNTIILNDLPGLRDACIQSLTSECRTLRTVSILNSPF---LSDTAYKSLALCRKLHKLRI 485
Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDG 244
+++TD+ + L K +L + + CP +T L +L+++ L +N+ C
Sbjct: 486 EGNNRITDASVKVLAKSCSQLEHVYMVDCPRLTDLSLKALASVRHLNVINVADC------ 539
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
+++ + G +I V + ++ LNL +C ++ C +C
Sbjct: 540 ---------VRIQDTGVRQI-----VEGPSGSKIKELNLTNCVRVMPTVIRRFVYC-FRC 584
Query: 305 LELSDT------QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L V +G+ L L NL SI++S ISD G+SSL + N R
Sbjct: 585 HNLVYASFCYCEHVTDAGVELLGTLPNLISIDMSGCNISDH------GVSSLGN-NAMMR 637
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIK 417
+ +A+T L GL + + + L +L+I LTD +K++
Sbjct: 638 DVVIAECSAITDL-GLQKM--------------CQQCRFLENLDISHCTNLTDNAIKNLV 682
Query: 418 DLSS-LTLLNLSQNCNLTDKTLELISGLTGLVS-LNVSNSRITS-AGLRHL-KPLKNLRS 473
L LNLS LTD +L+ +SG+ + L++SN + S LR+L K K L+S
Sbjct: 683 FCCRLLRTLNLSGCDKLTDSSLQYLSGVCHYLEMLDLSNCTLVSDKALRYLRKGCKRLQS 742
Query: 474 LTLESCK-VTANDIKRLQSR 492
LT+ C+ +T N +++ Q +
Sbjct: 743 LTILYCRNITKNAVQKFQMK 762
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 97/352 (27%), Positives = 159/352 (45%), Gaps = 35/352 (9%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLK-GLQKLTLLNLEGC 214
L LN+K C +T +K + NL+ L +S K VTD + + G L LNL C
Sbjct: 299 LGHLNLKNCYNLTRESLKIIGQCRNLQDLNLSEVKGVTDEVMKDIAMGCTSLLYLNLSSC 358
Query: 215 PVTAACLDSLSALGS-LFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNL---GFNEITDEC 268
++ + L L+ + + YL+L C + S+ G + G KV+ L G +ITD+
Sbjct: 359 LISDSTLRYLARYCTNMQYLSLAYCTKFSNKGLSYLANGKGCHKVIYLDLSGCEQITDDG 418
Query: 269 LVHL-KGLTNLESLNL-DSCGIGDEGLVNLTGLCN-------LKCLELSDTQVGSSGL-R 318
+ G ++L ++ L D G+ D + +LT C L LSDT S L R
Sbjct: 419 YKFVGMGCSSLNTIILNDLPGLRDACIQSLTSECRTLRTVSILNSPFLSDTAYKSLALCR 478
Query: 319 HLSGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALTSLTGLTH 376
L L +E N I+D S++ LA S L+ + + D ++TD L AL S+ L
Sbjct: 479 KLHKL-RIEGNN----RITDASVKVLAKSCSQLEHVYMVDCPRLTDLSLKALASVRHLNV 533
Query: 377 LDLFG-ARITDSGAAYL------RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 429
+++ RI D+G + K L +L C + + + L+ S
Sbjct: 534 INVADCVRIQDTGVRQIVEGPSGSKIKEL-NLTNCVRVMPTVIRRFVYCFRCHNLVYASF 592
Query: 430 -NC-NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 479
C ++TD +EL+ L L+S+++S I+ G+ L +R + + C
Sbjct: 593 CYCEHVTDAGVELLGTLPNLISIDMSGCNISDHGVSSLGNNAMMRDVVIAEC 644
>gi|332030619|gb|EGI70307.1| F-box/LRR-repeat protein 14 [Acromyrmex echinatior]
Length = 837
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 94/315 (29%), Positives = 143/315 (45%), Gaps = 87/315 (27%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH----------------------------LRGLSNL 108
LK NL++L+ + C I+D G+ + + L NL
Sbjct: 498 LKGVPNLEALNLSGCYNITDSGITNAFCQEYPSLIELNLSLCKQVTDTSLSRIAQFLKNL 557
Query: 109 TSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGL--------MKLE 158
L IT G+ A GL L +LDL C + G+ +L GL + LE
Sbjct: 558 EHLELGGCCNITNTGLLLIAWGLKKLKRLDLRSCWHVSDLGIAHLAGLNRETADGNLALE 617
Query: 159 SLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L+++ C ++D ++ +S GLT LKS+ +S C +TDSG+ +L + L LNL C
Sbjct: 618 HLSLQDCQRLSDEALRHVSLGLTTLKSINLSFCVCITDSGVKHLARMSSLRELNLRSC-- 675
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KG 274
D++S +G + YL E S+I SL V F ++I D+ LVH+ +G
Sbjct: 676 -----DNISDIG-MAYL-----------AEGGSRITSLDV---SFCDKIGDQALVHISQG 715
Query: 275 LTNLESLNLDSCGIGDEGLVNLT------GLC----------------NLKCLELSD-TQ 311
L NL+SL+L +C I DEG+ + G C NLKC++L T+
Sbjct: 716 LFNLKSLSLSACQISDEGICKIALETLNIGQCSRLTDRGLHTVAESMKNLKCIDLYGCTK 775
Query: 312 VGSSGLRHLSGLTNL 326
+ +SGL + L L
Sbjct: 776 ITTSGLERIMKLPQL 790
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 146/289 (50%), Gaps = 57/289 (19%)
Query: 151 LKGLMKLESLNIKWCNCITDSDM----------------------------KPLSGLTNL 182
LKG+ LE+LN+ C ITDS + + L NL
Sbjct: 498 LKGVPNLEALNLSGCYNITDSGITNAFCQEYPSLIELNLSLCKQVTDTSLSRIAQFLKNL 557
Query: 183 KSLQI-SCSKVTDSG---IAYLKGLQKLTLLNLEGCPVTA-------ACLDSLSALG--S 229
+ L++ C +T++G IA+ GL+KL L+L C + A L+ +A G +
Sbjct: 558 EHLELGGCCNITNTGLLLIAW--GLKKLKRLDLRSCWHVSDLGIAHLAGLNRETADGNLA 615
Query: 230 LFYLNLNRCQ-LSDDGCEKFS-KIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC 286
L +L+L CQ LSD+ S + +LK +NL F ITD + HL +++L LNL SC
Sbjct: 616 LEHLSLQDCQRLSDEALRHVSLGLTTLKSINLSFCVCITDSGVKHLARMSSLRELNLRSC 675
Query: 287 -GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSLR 342
I D G+ L G + L++S ++G L H+S GL NL+S++LS ISD +
Sbjct: 676 DNISDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQISDEGIC 735
Query: 343 KLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSG 388
K+A L++LN+ ++TD GL + S+ L +DL+G +IT SG
Sbjct: 736 KIA----LETLNIGQCSRLTDRGLHTVAESMKNLKCIDLYGCTKITTSG 780
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 121/244 (49%), Gaps = 36/244 (14%)
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVN-----LTGLCNLK---CLELSDTQVGSSGLRHLSG 322
LKG+ NLE+LNL C I D G+ N L L C +++DT + R
Sbjct: 498 LKGVPNLEALNLSGCYNITDSGITNAFCQEYPSLIELNLSLCKQVTDTSLS----RIAQF 553
Query: 323 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 372
L NLE + L I++ L +A GL LK L+L + ++D G+A L L
Sbjct: 554 LKNLEHLELGGCCNITNTGLLLIAWGLKKLKRLDLRSCWHVSDLGIAHLAGLNRETADGN 613
Query: 373 -GLTHLDLFG-ARITDSGAAYLR-NFKNLRSLE----ICGGGLTDAGVKHIKDLSSLTLL 425
L HL L R++D ++ L+S+ +C +TD+GVKH+ +SSL L
Sbjct: 614 LALEHLSLQDCQRLSDEALRHVSLGLTTLKSINLSFCVC---ITDSGVKHLARMSSLREL 670
Query: 426 NLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 482
NL N++D + L G + + SL+VS +I L H+ + L NL+SL+L +C+++
Sbjct: 671 NLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQIS 730
Query: 483 ANDI 486
I
Sbjct: 731 DEGI 734
>gi|83749483|ref|ZP_00946473.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
gi|83723837|gb|EAP71025.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
Length = 546
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 135/291 (46%), Gaps = 2/291 (0%)
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+L S + V G+ L + LT L+L + A L A L LN+NR ++
Sbjct: 230 TLNASRNGVGGEGVRALVDCKTLTSLDLSENGLGDAEAQRLGASERLTTLNVNRNRIDVQ 289
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
G + +L L++G N I D + L L +LN++ +G G+ L L
Sbjct: 290 GARALADCKTLTSLDIGGNSIGDAGVEALLANAQLTTLNVERAAVGAHGVRALADSKTLT 349
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
L + D +G G + L+ T+L +++ GI + LA + L +LNL I D
Sbjct: 350 SLRI-DNNIGDEGAKTLAASTSLTTLHSESNGIGLAGAKALAANTRLTTLNLGHNGIGDA 408
Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
G A + T L L + ++D+GA L K L +L+ + DAG + + +LT
Sbjct: 409 GAQAWLANTTLVSLSVRRNGLSDAGATRLAASKTLTTLDAGDNAIKDAGARALAANRTLT 468
Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
L++S N + + ++ T L SL++ N+R+ AG+R L + L SL
Sbjct: 469 TLDVSSN-EIGNAGARALAANTRLASLDLRNNRMLEAGVRALLVNRTLSSL 518
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 124/266 (46%), Gaps = 1/266 (0%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N + D++ + L L +L ++ +++ G L + LT L++ G + A +++L
Sbjct: 260 NGLGDAEAQRLGASERLTTLNVNRNRIDVQGARALADCKTLTSLDIGGNSIGDAGVEALL 319
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
A L LN+ R + G + +L L + N I DE L T+L +L+ +S
Sbjct: 320 ANAQLTTLNVERAAVGAHGVRALADSKTLTSLRID-NNIGDEGAKTLAASTSLTTLHSES 378
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
GIG G L L L L +G +G + T L S+++ G+SD +LA
Sbjct: 379 NGIGLAGAKALAANTRLTTLNLGHNGIGDAGAQAWLANTTLVSLSVRRNGLSDAGATRLA 438
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
+L +L+ I D G AL + LT LD+ I ++GA L L SL++
Sbjct: 439 ASKTLTTLDAGDNAIKDAGARALAANRTLTTLDVSSNEIGNAGARALAANTRLASLDLRN 498
Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNC 431
+ +AGV+ + +L+ L +S NC
Sbjct: 499 NRMLEAGVRALLVNRTLSSLGVSFNC 524
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 112/285 (39%), Gaps = 70/285 (24%)
Query: 201 KGLQKLTLL------NLEGCPVTAACLDSLSALGSLFYLNLNRCQ--LSDDGCEKFSKIG 252
L+KLTL +L G P T L L+L+RC+ ++ G S++
Sbjct: 132 PALEKLTLAGAFTDADLAGLPPT------------LKELDLSRCRGCITAAGIAHLSRL- 178
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
L LNL N I L L L++ CGIG E L L L S V
Sbjct: 179 PLVRLNLSGNRIGPVEARLLANHPTLTELDVSHCGIGPEEARALAASARLTTLNASRNGV 238
Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
G G+R L L S++LS G+ D ++L L +LN++ +I
Sbjct: 239 GGEGVRALVDCKTLTSLDLSENGLGDAEAQRLGASERLTTLNVNRNRI------------ 286
Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
D+ GAR L + K L SL+I G + DAGV+ L N
Sbjct: 287 -----DVQGAR-------ALADCKTLTSLDIGGNSIGDAGVEA-----------LLANAQ 323
Query: 433 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 477
LT +LNV + + + G+R L K L SL ++
Sbjct: 324 LT--------------TLNVERAAVGAHGVRALADSKTLTSLRID 354
>gi|406830657|ref|ZP_11090251.1| hypothetical protein SpalD1_03434 [Schlesneria paludicola DSM
18645]
Length = 254
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 93/174 (53%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
L+ L L +L+++ +++ G + K+ SL L L ++I+D L L+ L NL
Sbjct: 65 YLNLLKPFRDLTWLDVSGTTITNAGMPEIGKLTSLTALYLSKSQISDAGLSELRSLKNLT 124
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
+L++ GI +EG+ ++ L L+ L L T + GL L LT+L +NL + ++D
Sbjct: 125 TLHIVGNGISNEGMRSIGELDELRILHLGRTTITEEGLHELKKLTHLSDLNLIHSNLNDD 184
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
+ L+ L+SL +L+L +I+D GLA+ L LT L + T +G L+
Sbjct: 185 AANVLSELTSLTTLHLGRNEISDVGLASFNKLNNLTILTYQRNKTTLAGEEALK 238
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 94/179 (52%), Gaps = 2/179 (1%)
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
L +L +++S T I++ + ++ L+SL +L L QI+D GL+ L SL LT L +
Sbjct: 69 LKPFRDLTWLDVSGTTITNAGMPEIGKLTSLTALYLSKSQISDAGLSELRSLKNLTTLHI 128
Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
G I++ G + LR L + +T+ G+ +K L+ L+ LNL NL D
Sbjct: 129 VGNGISNEGMRSIGELDELRILHLGRTTITEEGLHELKKLTHLSDLNLIH-SNLNDDAAN 187
Query: 440 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 498
++S LT L +L++ + I+ GL L NL LT + K T + L+ + LPNL+
Sbjct: 188 VLSELTSLTTLHLGRNEISDVGLASFNKLNNLTILTYQRNKTTLAGEEALK-QALPNLM 245
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 3/163 (1%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+D+SG+ +T++G+ + ++L +L + QISD GL LR L NLT+L N I+
Sbjct: 78 LDVSGTTITNAGMPEIGKLTSLTALYLSKS-QISDAGLSELRSLKNLTTLHIV-GNGISN 135
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+GM++ L L L L R T GL LK L L LN+ N + D LS LT+
Sbjct: 136 EGMRSIGELDELRILHLGRTTITEEGLHELKKLTHLSDLNLIHSN-LNDDAANVLSELTS 194
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
L +L + ++++D G+A L LT+L + T A ++L
Sbjct: 195 LTTLHLGRNEISDVGLASFNKLNNLTILTYQRNKTTLAGEEAL 237
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 82/159 (51%)
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
LK +L L++ I + G+ + L +L L LS +Q+ +GL L L NL ++++
Sbjct: 69 LKPFRDLTWLDVSGTTITNAGMPEIGKLTSLTALYLSKSQISDAGLSELRSLKNLTTLHI 128
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
GIS+ +R + L L+ L+L IT+ GL L LT L+ L+L + + D A
Sbjct: 129 VGNGISNEGMRSIGELDELRILHLGRTTITEEGLHELKKLTHLSDLNLIHSNLNDDAANV 188
Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
L +L +L + ++D G+ L++LT+L +N
Sbjct: 189 LSELTSLTTLHLGRNEISDVGLASFNKLNNLTILTYQRN 227
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 88/178 (49%), Gaps = 11/178 (6%)
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
VN KG K N K+ N +KP LT L +S + +T++G+ + L LT
Sbjct: 53 VNFKGNKKF---NYKYLNL-----LKPFRDLT---WLDVSGTTITNAGMPEIGKLTSLTA 101
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268
L L ++ A L L +L +L L++ +S++G ++ L++L+LG IT+E
Sbjct: 102 LYLSKSQISDAGLSELRSLKNLTTLHIVGNGISNEGMRSIGELDELRILHLGRTTITEEG 161
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
L LK LT+L LNL + D+ L+ L +L L L ++ GL + L NL
Sbjct: 162 LHELKKLTHLSDLNLIHSNLNDDAANVLSELTSLTTLHLGRNEISDVGLASFNKLNNL 219
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 1/168 (0%)
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
++F+ N + + +L LD+ T + G+ + L L +L + I+D
Sbjct: 53 VNFKGNKKFNYKYLNLLKPFRDLTWLDVSGTTITNAGMPEIGKLTSLTALYLSKSQ-ISD 111
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ + L L NL +L I + +++ G+ + L +L +L+L +T L L L L
Sbjct: 112 AGLSELRSLKNLTTLHIVGNGISNEGMRSIGELDELRILHLGRTTITEEGLHELKKLTHL 171
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
LNL L+DD S++ SL L+LG NEI+D L L NL
Sbjct: 172 SDLNLIHSNLNDDAANVLSELTSLTTLHLGRNEISDVGLASFNKLNNL 219
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 73/147 (49%), Gaps = 1/147 (0%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT GM L +L L L + GL L+ L L +L+I N I++ M+ +
Sbjct: 85 ITNAGMPEIGKLTSLTALYLSKSQISDAGLSELRSLKNLTTLHI-VGNGISNEGMRSIGE 143
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L L+ L + + +T+ G+ LK L L+ LNL + + LS L SL L+L R
Sbjct: 144 LDELRILHLGRTTITEEGLHELKKLTHLSDLNLIHSNLNDDAANVLSELTSLTTLHLGRN 203
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEIT 265
++SD G F+K+ +L +L N+ T
Sbjct: 204 EISDVGLASFNKLNNLTILTYQRNKTT 230
>gi|242067197|ref|XP_002448875.1| hypothetical protein SORBIDRAFT_05g000740 [Sorghum bicolor]
gi|241934718|gb|EES07863.1| hypothetical protein SORBIDRAFT_05g000740 [Sorghum bicolor]
Length = 691
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 113/420 (26%), Positives = 186/420 (44%), Gaps = 65/420 (15%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L++L L GV+D + ++A + L S+DLS + +T + NLQ L CI
Sbjct: 202 LRELSLKWCLGVSDLGIQLLALKCRKLTSLDLSYTMITKDSFPPIMKLPNLQELTLVGCI 261
Query: 93 QISDGGLEHLRGL--SNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLERCTRIHGGLV 149
I D L L+ +L L IT G+ + L+ NL +LDL C + +V
Sbjct: 262 GIDDDALGSLQKECSKSLQVLDLSHCQNITDVGVSSILKLVPNLFELDLSYCCPVTPSMV 321
Query: 150 -NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAY-LKGLQKL 206
+ + + KL +L ++ C + D + +LK L +S CS +TD+ ++ + L+ L
Sbjct: 322 RSFQKIPKLRTLKLEGCKFMVDGLKAIGTSCVSLKELNLSKCSGMTDTEFSFAMSRLKNL 381
Query: 207 TLLNLEGCP-VTAACLDSL-SALGSLFYLNLNRCQ------------------------- 239
L++ C +T L ++ S+ SL L + C
Sbjct: 382 LKLDITCCRNITDVSLAAMTSSCTSLISLRMESCSRVSSGALQLIGKHCSHLEQLDLTDS 441
Query: 240 -LSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVN 295
L D+G + S+ G L L +G +I+DE L H+ + NL ++L C G+ D+G++
Sbjct: 442 DLDDEGLKALSRCGKLSSLKIGICLKISDEGLTHIGRSCPNLRDIDLYRCGGLSDDGIIP 501
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLN 354
+ C + LESINLS+ T I+D SL L+ + L +L
Sbjct: 502 IAQGCPM-----------------------LESINLSYCTEITDRSLISLSKCTKLNTLE 538
Query: 355 LDA-RQITDTGLAALT-SLTGLTHLDLFGA-RITDSGAAYLRNFKN-LRSLEICGGGLTD 410
+ IT TGL+ + L+ LD+ + D G YL F + LR + + +TD
Sbjct: 539 IRGCPMITSTGLSEIAMGCRLLSKLDIKKCFEVNDVGMLYLSQFSHSLREINLSYCSVTD 598
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 129/452 (28%), Positives = 194/452 (42%), Gaps = 68/452 (15%)
Query: 59 LLSVDLSGSD-VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
L +VDLS S +G+ L C L LD + + + D + L LS R
Sbjct: 125 LRAVDLSRSRGFGSAGVAALAASCPGLADLDLSNGVDLGDAAAAEVARAKGLRRLSLARW 184
Query: 117 NAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVNLKGL--MKLESLNIKWCNCITDSDM 173
+T G+ A G + L +L L+ C + + L L KL SL++ + IT
Sbjct: 185 KPLTDMGLGCVAVGCMELRELSLKWCLGVSDLGIQLLALKCRKLTSLDLSY-TMITKDSF 243
Query: 174 KPLSGLTNLK----------------SLQISCSK------------VTDSGIA-YLKGLQ 204
P+ L NL+ SLQ CSK +TD G++ LK +
Sbjct: 244 PPIMKLPNLQELTLVGCIGIDDDALGSLQKECSKSLQVLDLSHCQNITDVGVSSILKLVP 303
Query: 205 KLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNLG-F 261
L L+L C PVT + + S + L L L C+ DG + + SLK LNL
Sbjct: 304 NLFELDLSYCCPVTPSMVRSFQKIPKLRTLKLEGCKFMVDGLKAIGTSCVSLKELNLSKC 363
Query: 262 NEITD-ECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC-NLKCLELSDTQVGSSGLR 318
+ +TD E + L NL L++ C I D L +T C +L L + SSG
Sbjct: 364 SGMTDTEFSFAMSRLKNLLKLDITCCRNITDVSLAAMTSSCTSLISLRMESCSRVSSGAL 423
Query: 319 HLSG--LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
L G ++LE ++L+ + + D L+ L+ L SL + G+ S GLTH
Sbjct: 424 QLIGKHCSHLEQLDLTDSDLDDEGLKALSRCGKLSSLKI--------GICLKISDEGLTH 475
Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI-KDLSSLTLLNLSQNCNLT 434
+ R+ NLR +++ GGL+D G+ I + L +NLS +T
Sbjct: 476 IG--------------RSCPNLRDIDLYRCGGLSDDGIIPIAQGCPMLESINLSYCTEIT 521
Query: 435 DKTLELISGLTGLVSLNVSN-SRITSAGLRHL 465
D++L +S T L +L + ITS GL +
Sbjct: 522 DRSLISLSKCTKLNTLEIRGCPMITSTGLSEI 553
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 89/320 (27%), Positives = 149/320 (46%), Gaps = 33/320 (10%)
Query: 201 KGLQKLTLLNLE-------GCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFS-KI 251
KGL++L+L + GC V C++ L L+L C +SD G + + K
Sbjct: 174 KGLRRLSLARWKPLTDMGLGC-VAVGCME-------LRELSLKWCLGVSDLGIQLLALKC 225
Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN--LKCLELS 308
L L+L + IT + + L NL+ L L C GI D+ L +L C+ L+ L+LS
Sbjct: 226 RKLTSLDLSYTMITKDSFPPIMKLPNLQELTLVGCIGIDDDALGSLQKECSKSLQVLDLS 285
Query: 309 DTQ----VGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDT 363
Q VG S + L + NL ++LS+ ++ +R + L++L L+ +
Sbjct: 286 HCQNITDVGVSSILKL--VPNLFELDLSYCCPVTPSMVRSFQKIPKLRTLKLEGCKFMVD 343
Query: 364 GLAAL-TSLTGLTHLDLFGAR-ITDSGAAY-LRNFKNLRSLEI-CGGGLTDAGVKHI-KD 418
GL A+ TS L L+L +TD+ ++ + KNL L+I C +TD + +
Sbjct: 344 GLKAIGTSCVSLKELNLSKCSGMTDTEFSFAMSRLKNLLKLDITCCRNITDVSLAAMTSS 403
Query: 419 LSSLTLLNLSQNCNLTDKTLELI-SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 477
+SL L + ++ L+LI + L L++++S + GL+ L L SL +
Sbjct: 404 CTSLISLRMESCSRVSSGALQLIGKHCSHLEQLDLTDSDLDDEGLKALSRCGKLSSLKIG 463
Query: 478 SCKVTANDIKRLQSRDLPNL 497
C +++ R PNL
Sbjct: 464 ICLKISDEGLTHIGRSCPNL 483
>gi|320167410|gb|EFW44309.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 702
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 123/296 (41%), Gaps = 1/296 (0%)
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+ N IT + LT L L + +++T GL LTLL+L P+T+ +
Sbjct: 67 YTNNITSIPANAFASLTRLTILTLDVNQITSIPATAFTGLSALTLLSLGSNPITSMSASA 126
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
+ L L L+L+ ++ F+ + +L + L +IT L +L+ L L
Sbjct: 127 FTDLTKLTQLSLDNTPITSISANAFAGLSALTQMFLYQTQITSISASAFADLRSLQKLYL 186
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
I TGL L L+LS Q+ S + L++L + L F +S +
Sbjct: 187 YGNRITSISANAFTGLTKLAYLDLSYNQITSISANAFADLSSLTDLRLYFNQMSSLAANT 246
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
GLS+L L+L QIT A T L L L L IT A +L L++
Sbjct: 247 FTGLSALTQLSLLNNQITAISANAFTGLNALKLLYLHNNLITTIAANSFAGLPSLTVLQV 306
Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
+T LS+LT+ L+ N +T + LT L L + N+ T+
Sbjct: 307 YNNTITSISANAFTGLSALTMFLLNYN-QITSIPASAFTELTTLQVLALDNNPFTT 361
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 111/268 (41%), Gaps = 1/268 (0%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+T+ ++ ++L L L L+ Q++ F+ + +L +L+LG N IT L
Sbjct: 71 ITSIPANAFASLTRLTILTLDVNQITSIPATAFTGLSALTLLSLGSNPITSMSASAFTDL 130
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
T L L+LD+ I GL L + L TQ+ S + L +L+ + L
Sbjct: 131 TKLTQLSLDNTPITSISANAFAGLSALTQMFLYQTQITSISASAFADLRSLQKLYLYGNR 190
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
I+ S GL+ L L+L QIT A L+ LT L L+ +++ A
Sbjct: 191 ITSISANAFTGLTKLAYLDLSYNQITSISANAFADLSSLTDLRLYFNQMSSLAANTFTGL 250
Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 455
L L + +T L++L LL L N +T +GL L L V N+
Sbjct: 251 SALTQLSLLNNQITAISANAFTGLNALKLLYLHNNL-ITTIAANSFAGLPSLTVLQVYNN 309
Query: 456 RITSAGLRHLKPLKNLRSLTLESCKVTA 483
ITS L L L ++T+
Sbjct: 310 TITSISANAFTGLSALTMFLLNYNQITS 337
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 78/194 (40%), Gaps = 11/194 (5%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHG-GLVN 150
IS LR L L + N IT+ AF GL L LDL + T I +
Sbjct: 170 ISASAFADLRSLQKL----YLYGNRITSISANAFTGLTKLAYLDLSYNQITSISANAFAD 225
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
L L L + N ++ +GL+ L L + +++T GL L LL
Sbjct: 226 LSSLTDLR----LYFNQMSSLAANTFTGLSALTQLSLLNNQITAISANAFTGLNALKLLY 281
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L +T +S + L SL L + ++ F+ + +L + L +N+IT
Sbjct: 282 LHNNLITTIAANSFAGLPSLTVLQVYNNTITSISANAFTGLSALTMFLLNYNQITSIPAS 341
Query: 271 HLKGLTNLESLNLD 284
LT L+ L LD
Sbjct: 342 AFTELTTLQVLALD 355
Score = 45.1 bits (105), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 90/212 (42%), Gaps = 20/212 (9%)
Query: 14 LVYSRCLTEVSLEAFRDC-ALQDLCLGQYPGVNDKWMDVIASQG-SSLLSVDLSGSDVTD 71
+Y +T +S AF D +LQ L L G + A G + L +DLS + +T
Sbjct: 161 FLYQTQITSISASAFADLRSLQKLYLY---GNRITSISANAFTGLTKLAYLDLSYNQITS 217
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
D S+L L F Q+S GLS LT LS NN ITA AF GL
Sbjct: 218 ISANAFADLSSLTDLRLYFN-QMSSLAANTFTGLSALTQLSLL-NNQITAISANAFTGL- 274
Query: 132 NLVKLDLERCTRIHGGLV------NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
N +KL +H L+ + GL L L + + N IT +GL+ L
Sbjct: 275 NALKL-----LYLHNNLITTIAANSFAGLPSLTVLQV-YNNTITSISANAFTGLSALTMF 328
Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
++ +++T + L L +L L+ P T
Sbjct: 329 LLNYNQITSIPASAFTELTTLQVLALDNNPFT 360
>gi|207743099|ref|YP_002259491.1| lrr-gala family type III effector protein (gala 5) [Ralstonia
solanacearum IPO1609]
gi|206594496|emb|CAQ61423.1| lrr-gala family type III effector protein (gala 5) [Ralstonia
solanacearum IPO1609]
Length = 526
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 135/291 (46%), Gaps = 2/291 (0%)
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+L S + V G+ L + LT L+L + A L A L LN+NR ++
Sbjct: 210 TLNASRNGVGGEGVRALVDCKTLTSLDLSENGLGDAEAQRLGASERLTTLNVNRNRIDVQ 269
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
G + +L L++G N I D + L L +LN++ +G G+ L L
Sbjct: 270 GARALADCKTLTSLDIGGNSIGDAGVEALLANAQLTTLNVERAAVGAHGVRALADSKTLT 329
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
L + D +G G + L+ T+L +++ GI + LA + L +LNL I D
Sbjct: 330 SLRI-DNNIGDEGAKTLAASTSLTTLHSESNGIGLAGAKALAANTRLTTLNLGHNGIGDA 388
Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
G A + T L L + ++D+GA L K L +L+ + DAG + + +LT
Sbjct: 389 GAQAWLANTTLVSLSVRRNGLSDAGATRLAASKTLTTLDAGDNAIKDAGARALAANRTLT 448
Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
L++S N + + ++ T L SL++ N+R+ AG+R L + L SL
Sbjct: 449 TLDVSSN-EIGNAGARALAANTRLASLDLRNNRMLEAGVRALLVNRTLSSL 498
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 124/266 (46%), Gaps = 1/266 (0%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N + D++ + L L +L ++ +++ G L + LT L++ G + A +++L
Sbjct: 240 NGLGDAEAQRLGASERLTTLNVNRNRIDVQGARALADCKTLTSLDIGGNSIGDAGVEALL 299
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
A L LN+ R + G + +L L + N I DE L T+L +L+ +S
Sbjct: 300 ANAQLTTLNVERAAVGAHGVRALADSKTLTSLRID-NNIGDEGAKTLAASTSLTTLHSES 358
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
GIG G L L L L +G +G + T L S+++ G+SD +LA
Sbjct: 359 NGIGLAGAKALAANTRLTTLNLGHNGIGDAGAQAWLANTTLVSLSVRRNGLSDAGATRLA 418
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
+L +L+ I D G AL + LT LD+ I ++GA L L SL++
Sbjct: 419 ASKTLTTLDAGDNAIKDAGARALAANRTLTTLDVSSNEIGNAGARALAANTRLASLDLRN 478
Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNC 431
+ +AGV+ + +L+ L +S NC
Sbjct: 479 NRMLEAGVRALLVNRTLSSLGVSFNC 504
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 112/285 (39%), Gaps = 70/285 (24%)
Query: 201 KGLQKLTLL------NLEGCPVTAACLDSLSALGSLFYLNLNRCQ--LSDDGCEKFSKIG 252
L+KLTL +L G P T L L+L+RC+ ++ G S++
Sbjct: 112 PALEKLTLAGAFTDADLAGLPPT------------LKELDLSRCRGCITAAGIAHLSRL- 158
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
L LNL N I L L L++ CGIG E L L L S V
Sbjct: 159 PLVRLNLSGNRIGPVEARLLANHPTLTELDVSHCGIGPEEARALAASARLTTLNASRNGV 218
Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
G G+R L L S++LS G+ D ++L L +LN++ +I
Sbjct: 219 GGEGVRALVDCKTLTSLDLSENGLGDAEAQRLGASERLTTLNVNRNRI------------ 266
Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
D+ GAR L + K L SL+I G + DAGV+ L N
Sbjct: 267 -----DVQGAR-------ALADCKTLTSLDIGGNSIGDAGVEA-----------LLANAQ 303
Query: 433 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 477
LT +LNV + + + G+R L K L SL ++
Sbjct: 304 LT--------------TLNVERAAVGAHGVRALADSKTLTSLRID 334
>gi|401426392|ref|XP_003877680.1| hypothetical protein, unknown function [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493926|emb|CBZ29217.1| hypothetical protein, unknown function [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 811
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 94/317 (29%), Positives = 140/317 (44%), Gaps = 51/317 (16%)
Query: 63 DLSGSDVTDSGLIHLKDCSNLQSLDF--NFCIQISDGGLEHLRGL-------SNLTSLSF 113
DLS + + + L+ C NL LD +F Q GLE L L +++ SL
Sbjct: 472 DLSLAHTRVTNVTELQHCHNLWRLDLQGSFVDQAGIAGLERLPKLRVLLLSKTDVASLEL 531
Query: 114 RRNNAITAQ---------GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK-LESLNIK 163
+A Q AF G+ L T +N G+ K L LN+
Sbjct: 532 ILQSASLEQLEVKFSRVNEKSAFFGVTKASALTYVTLTHCDVSDINNLGMCKELRLLNV- 590
Query: 164 WCNCITDSDMKPLSGLTNLKSLQ---------------ISCSKVT-----DSGIAYLKG- 202
W + +T ++GL + KSLQ +SC+K+ S + L G
Sbjct: 591 WSSKVTSEG---IAGLCDAKSLQEVDLAETAVTDIGPLLSCTKIQALILYKSSVRSLDGI 647
Query: 203 --LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
LQ+L L++ PV++ + SLSA SL LNL+ + DDG + + SLKV+++
Sbjct: 648 GALQRLRRLDIAETPVSS--IRSLSACQSLEILNLSNTAVDDDGFQGIGQAQSLKVVSMS 705
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
F IT L L ++LE L SC + EGLV L C L L LS T++ G++ L
Sbjct: 706 FTAITQ--LGQLGQCSHLEELYAQSCPVTSEGLVGLEKACCLAKLNLSYTKI-QGGIQRL 762
Query: 321 SGLTNLESINLSFTGIS 337
+ L +N+ FT +
Sbjct: 763 TNCRKLLKLNVKFTEVP 779
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 95/358 (26%), Positives = 171/358 (47%), Gaps = 24/358 (6%)
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMK---LESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L L +LD+ C G + G+ + L S+++ CN + D+D+ L+ L ++ L
Sbjct: 282 LQKLRRLDMTNCK----GDFDWAGVARCCFLRSVHLSGCN-VKDADVPHLAQLPCVEELL 336
Query: 187 ISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
+S +++T+ +A KGL+ + L N + V + +D L L L L+L+ +SD C
Sbjct: 337 LSRTRITNVQALATGKGLRIIQLSNAQ---VDSDGIDGLQTLPYLTRLDLSSTLVSDVNC 393
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
+ SL LNL +T E + L L LE L L++ I D + + +LK L
Sbjct: 394 --LGQSQSLIYLNLAKTHVTSEGIADLSRLLTLEHLMLNNNNIRDVSFLAESH--SLKTL 449
Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
L T V S+ L L L+ ++L+ T +++ + +L +L L+L + G+
Sbjct: 450 SLQSTLVDSAALEGFGRLQTLQDLSLAHTRVTN--VTELQHCHNLWRLDLQGSFVDQAGI 507
Query: 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTL 424
A L L L L L ++ + + +L LE+ + + + + S+LT
Sbjct: 508 AGLERLPKLRVLLL--SKTDVASLELILQSASLEQLEVKFSRVNEKSAFFGVTKASALTY 565
Query: 425 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
+ L+ +C+++D + + L LNV +S++TS G+ L K+L+ + L VT
Sbjct: 566 VTLT-HCDVSD--INNLGMCKELRLLNVWSSKVTSEGIAGLCDAKSLQEVDLAETAVT 620
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 111/502 (22%), Positives = 217/502 (43%), Gaps = 81/502 (16%)
Query: 59 LLSVDLSGSDVTDSGLIHLKD-------------CSNLQSLDFN---FCIQISDG----- 97
L SV LSG +V D+ + HL +N+Q+L IQ+S+
Sbjct: 308 LRSVHLSGCNVKDADVPHLAQLPCVEELLLSRTRITNVQALATGKGLRIIQLSNAQVDSD 367
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
G++ L+ L LT L ++ + +L+ L+L + G+ +L L+ L
Sbjct: 368 GIDGLQTLPYLTRLDL---SSTLVSDVNCLGQSQSLIYLNLAKTHVTSEGIADLSRLLTL 424
Query: 158 ESL-----NIKWCNCITDS-------------DMKPLSGLTNLKSLQ-ISCSKVTDSGIA 198
E L NI+ + + +S D L G L++LQ +S + + +
Sbjct: 425 EHLMLNNNNIRDVSFLAESHSLKTLSLQSTLVDSAALEGFGRLQTLQDLSLAHTRVTNVT 484
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
L+ L L+L+G V A + L L L L L++ ++ E + SL+ L
Sbjct: 485 ELQHCHNLWRLDLQGSFVDQAGIAGLERLPKLRVLLLSKTDVA--SLELILQSASLEQLE 542
Query: 259 LGFNEITDE-CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC-NLKCLELSDTQVGSSG 316
+ F+ + ++ + + L + L C + D +N G+C L+ L + ++V S G
Sbjct: 543 VKFSRVNEKSAFFGVTKASALTYVTLTHCDVSD---INNLGMCKELRLLNVWSSKVTSEG 599
Query: 317 LRHLSGLTNLESINLSFTGISD-----------------GSLRKLAGLSSLKSL-NLDAR 358
+ L +L+ ++L+ T ++D S+R L G+ +L+ L LD
Sbjct: 600 IAGLCDAKSLQEVDLAETAVTDIGPLLSCTKIQALILYKSSVRSLDGIGALQRLRRLDIA 659
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG----VK 414
+ + + +L++ L L+L + D G + ++L+ + + +T G
Sbjct: 660 ETPVSSIRSLSACQSLEILNLSNTAVDDDGFQGIGQAQSLKVVSMSFTAITQLGQLGQCS 719
Query: 415 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
H+++L +Q+C +T + L + L LN+S ++I G++ L + L L
Sbjct: 720 HLEEL-------YAQSCPVTSEGLVGLEKACCLAKLNLSYTKI-QGGIQRLTNCRKLLKL 771
Query: 475 TLESCKVTANDIKRLQSRDLPN 496
++ +V +++ ++ R LP+
Sbjct: 772 NVKFTEVPYDEVAYVK-RHLPS 792
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 94/424 (22%), Positives = 180/424 (42%), Gaps = 39/424 (9%)
Query: 80 CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
C L+S+ + C + D + HL L + L R Q + GL +++L
Sbjct: 305 CCFLRSVHLSGC-NVKDADVPHLAQLPCVEELLLSRTRITNVQALATGKGL-RIIQLSNA 362
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
+ G+ L+ L L L++ + SD+ L +L L ++ + VT GIA
Sbjct: 363 QVD--SDGIDGLQTLPYLTRLDL---SSTLVSDVNCLGQSQSLIYLNLAKTHVTSEGIAD 417
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
L L L L L + L+ SL L+L + E F ++ +L+ L+L
Sbjct: 418 LSRLLTLEHLMLNNNNIRDVSF--LAESHSLKTLSLQSTLVDSAALEGFGRLQTLQDLSL 475
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
+T+ + L+ NL L+L + G+ L L L+ L LS T V S L
Sbjct: 476 AHTRVTN--VTELQHCHNLWRLDLQGSFVDQAGIAGLERLPKLRVLLLSKTDVASLELIL 533
Query: 320 LSGLTNLESINLSFTGISDGS----LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
S +LE + + F+ +++ S + K + L+ + + D I + G+ L
Sbjct: 534 QSA--SLEQLEVKFSRVNEKSAFFGVTKASALTYVTLTHCDVSDINNLGMCKELRL---- 587
Query: 376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV--------------KHIKDLSS 421
L+++ +++T G A L + K+L+ +++ +TD G ++ L
Sbjct: 588 -LNVWSSKVTSEGIAGLCDAKSLQEVDLAETAVTDIGPLLSCTKIQALILYKSSVRSLDG 646
Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSL---NVSNSRITSAGLRHLKPLKNLRSLTLES 478
+ L + ++ + + I L+ SL N+SN+ + G + + ++L+ +++
Sbjct: 647 IGALQRLRRLDIAETPVSSIRSLSACQSLEILNLSNTAVDDDGFQGIGQAQSLKVVSMSF 706
Query: 479 CKVT 482
+T
Sbjct: 707 TAIT 710
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 77/335 (22%), Positives = 140/335 (41%), Gaps = 42/335 (12%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSL--------DFNFCIQ------------- 93
Q SL+ ++L+ + VT G+ L L+ L D +F +
Sbjct: 396 QSQSLIYLNLAKTHVTSEGIADLSRLLTLEHLMLNNNNIRDVSFLAESHSLKTLSLQSTL 455
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
+ LE L L LS ++ NL +LDL+ G V+ G
Sbjct: 456 VDSAALEGFGRLQTLQDLSLAHTRVTNVTELQHCH---NLWRLDLQ------GSFVDQAG 506
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGL---TNLKSLQISCSKVTDSGIAY-LKGLQKLTLL 209
+ LE L ++ +D+ L + +L+ L++ S+V + + + LT +
Sbjct: 507 IAGLERLPKLRVLLLSKTDVASLELILQSASLEQLEVKFSRVNEKSAFFGVTKASALTYV 566
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
L C V+ +++L L LN+ +++ +G SL+ ++L +TD +
Sbjct: 567 TLTHCDVSD--INNLGMCKELRLLNVWSSKVTSEGIAGLCDAKSLQEVDLAETAVTD--I 622
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
L T +++L L + L + L L+ L++++T V S +R LS +LE +
Sbjct: 623 GPLLSCTKIQALILYKSSV--RSLDGIGALQRLRRLDIAETPVSS--IRSLSACQSLEIL 678
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
NLS T + D + + SLK +++ IT G
Sbjct: 679 NLSNTAVDDDGFQGIGQAQSLKVVSMSFTAITQLG 713
>gi|290992602|ref|XP_002678923.1| predicted protein [Naegleria gruberi]
gi|284092537|gb|EFC46179.1| predicted protein [Naegleria gruberi]
Length = 305
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 89/162 (54%), Gaps = 7/162 (4%)
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
+ ++ + L SL++ I G +++ + LT LD+ G RI D GA ++ K L+S
Sbjct: 122 INEMTKMKQLTSLDISYNLIYAEGAKSISEMKQLTSLDIGGNRIYDKGAKFISELKQLKS 181
Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
L I + G+K I ++ LT L++ +N ++ D+ + IS + L SL V+N+RI
Sbjct: 182 LNIYNDWIGIDGIKPISEMKQLTSLDIGRN-HIGDEVAKFISDMKQLTSLTVNNNRIGVE 240
Query: 461 GLRHLKPLKNLRSLTLESCKVTA------NDIKRLQSRDLPN 496
G + + +K L+SL + + ++ A +++K+L S D+ +
Sbjct: 241 GAKFISEMKQLKSLGINNNQIYAEGAKFISEMKQLTSLDISD 282
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 85/170 (50%), Gaps = 1/170 (0%)
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
+T + L L++S + + G + +S + L S+++ I D + ++ L LKSLN+
Sbjct: 125 MTKMKQLTSLDISYNLIYAEGAKSISEMKQLTSLDIGGNRIYDKGAKFISELKQLKSLNI 184
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
I G+ ++ + LT LD+ I D A ++ + K L SL + + G K
Sbjct: 185 YNDWIGIDGIKPISEMKQLTSLDIGRNHIGDEVAKFISDMKQLTSLTVNNNRIGVEGAKF 244
Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465
I ++ L L ++ N + + + IS + L SL++S+++I + G + +
Sbjct: 245 ISEMKQLKSLGINNN-QIYAEGAKFISEMKQLTSLDISDNQIYAEGAKFI 293
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 90/178 (50%), Gaps = 5/178 (2%)
Query: 160 LNIKWCNCITDSDMKP-----LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
+++K+ + +S+ P ++ + L SL IS + + G + +++LT L++ G
Sbjct: 104 VDVKFSEMLFNSEETPKFINEMTKMKQLTSLDISYNLIYAEGAKSISEMKQLTSLDIGGN 163
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
+ +S L L LN+ + DG + S++ L L++G N I DE +
Sbjct: 164 RIYDKGAKFISELKQLKSLNIYNDWIGIDGIKPISEMKQLTSLDIGRNHIGDEVAKFISD 223
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
+ L SL +++ IG EG ++ + LK L +++ Q+ + G + +S + L S+++S
Sbjct: 224 MKQLTSLTVNNNRIGVEGAKFISEMKQLKSLGINNNQIYAEGAKFISEMKQLTSLDIS 281
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 90/185 (48%), Gaps = 3/185 (1%)
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
L N E P ++ ++ + L L+++ + +G + S++ L L++G N I D+
Sbjct: 112 LFNSEETP---KFINEMTKMKQLTSLDISYNLIYAEGAKSISEMKQLTSLDIGGNRIYDK 168
Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
+ L L+SLN+ + IG +G+ ++ + L L++ +G + +S + L
Sbjct: 169 GAKFISELKQLKSLNIYNDWIGIDGIKPISEMKQLTSLDIGRNHIGDEVAKFISDMKQLT 228
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
S+ ++ I + ++ + LKSL ++ QI G ++ + LT LD+ +I
Sbjct: 229 SLTVNNNRIGVEGAKFISEMKQLKSLGINNNQIYAEGAKFISEMKQLTSLDISDNQIYAE 288
Query: 388 GAAYL 392
GA ++
Sbjct: 289 GAKFI 293
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 81/167 (48%), Gaps = 1/167 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SL+I + N I K +S + L SL I +++ D G ++ L++L LN+
Sbjct: 128 MKQLTSLDISY-NLIYAEGAKSISEMKQLTSLDIGGNRIYDKGAKFISELKQLKSLNIYN 186
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ + +S + L L++ R + D+ + S + L L + N I E +
Sbjct: 187 DWIGIDGIKPISEMKQLTSLDIGRNHIGDEVAKFISDMKQLTSLTVNNNRIGVEGAKFIS 246
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
+ L+SL +++ I EG ++ + L L++SD Q+ + G + +
Sbjct: 247 EMKQLKSLGINNNQIYAEGAKFISEMKQLTSLDISDNQIYAEGAKFI 293
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 2/169 (1%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+ + + LTSL N I A+G K+ + + L LD+ G + L +L+
Sbjct: 122 INEMTKMKQLTSLDISYN-LIYAEGAKSISEMKQLTSLDIGGNRIYDKGAKFISELKQLK 180
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
SLNI + + I +KP+S + L SL I + + D ++ +++LT L + +
Sbjct: 181 SLNI-YNDWIGIDGIKPISEMKQLTSLDIGRNHIGDEVAKFISDMKQLTSLTVNNNRIGV 239
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
+S + L L +N Q+ +G + S++ L L++ N+I E
Sbjct: 240 EGAKFISEMKQLKSLGINNNQIYAEGAKFISEMKQLTSLDISDNQIYAE 288
>gi|167393817|ref|XP_001740724.1| F-box/leucine rich repeat protein [Entamoeba dispar SAW760]
gi|165895051|gb|EDR22856.1| F-box/leucine rich repeat protein, putative [Entamoeba dispar
SAW760]
Length = 659
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 88/366 (24%), Positives = 165/366 (45%), Gaps = 44/366 (12%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS SD G I+L C++L+ L N +++ L+ L + NL +S + ++
Sbjct: 260 LSPSD----GFIYLAGCNSLRYLYLNES-EVTSYHLDVLARMDNLLGISLKGCPTLSDYS 314
Query: 124 MKAF-AGLI--NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+ F G I +L +L++ H GL + L L L+I CN I + PL+ L
Sbjct: 315 LTPFKTGPIRNSLEELNISDTMVTHIGLQIVARLKYLRVLDISRCNGI--KILSPLNSLK 372
Query: 181 NLKSLQISCSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNR 237
L+ L++S +V + A+ + L L ++ P+ + L + S +L +NL
Sbjct: 373 YLEVLRLSNVRVNSDTLQDAFRTPPKYLQQLLVDAGPIDDSLLTVICSKFPNLVSVNLKE 432
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL 296
Q++ G E + L+ ++ G + D+ L +T+LE+++ + C I EG+ L
Sbjct: 433 SQITSPGVEALQMVKYLRYVDFGKTSVDDQVFEFLCKITSLETISFEGCQNISGEGVHVL 492
Query: 297 TGLCNLKCL--------------ELSD-----------TQVGSSGLRHLSGLTNLESINL 331
L L+ L E+ D +Q+G G ++++ + ++ ++L
Sbjct: 493 EPLRGLRVLNFNGCKNFSEYALKEMEDLSVETLRVAGASQIGMMGWKYIAQIEQIKRLDL 552
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
SFT + D ++++ L+ + L ++TD + L + +D AR T+ Y
Sbjct: 553 SFTSVDDNGVQEILKSKWLEVIYLRHTKVTDKSIETLLCCNLIRKID---ARETNVVKQY 609
Query: 392 LRNFKN 397
NF N
Sbjct: 610 --NFSN 613
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 96/363 (26%), Positives = 157/363 (43%), Gaps = 35/363 (9%)
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
+ G + N+ L SL I ITDSD+ + LT LK L IS K I L +
Sbjct: 154 VSGSVQNITKYTSLTSLQIY---NITDSDIPSIGKLTGLKKLSISSKKFI-GKIEDLIDV 209
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL---------------SDDGCEKF 248
+LT L + P+ +L L ++ C L DG
Sbjct: 210 SQLTSLEISNAPLGPEFYYNLYLFPYLVFIGFTHCHLPISGVSAQTPLSQLSPSDGFIYL 269
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNL-TGLC--NLKC 304
+ SL+ L L +E+T L L + NL ++L C + D L TG +L+
Sbjct: 270 AGCNSLRYLYLNESEVTSYHLDVLARMDNLLGISLKGCPTLSDYSLTPFKTGPIRNSLEE 329
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL----DARQI 360
L +SDT V GL+ ++ L L +++S ++ L+ L+SLK L + + R
Sbjct: 330 LNISDTMVTHIGLQIVARLKYLRVLDISRC----NGIKILSPLNSLKYLEVLRLSNVRVN 385
Query: 361 TDTGLAAL-TSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHIKD 418
+DT A T L L + I DS + F NL S+ + +T GV+ ++
Sbjct: 386 SDTLQDAFRTPPKYLQQLLVDAGPIDDSLLTVICSKFPNLVSVNLKESQITSPGVEALQM 445
Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLE 477
+ L ++ + ++ D+ E + +T L +++ + I+ G+ L+PL+ LR L
Sbjct: 446 VKYLRYVDFGKT-SVDDQVFEFLCKITSLETISFEGCQNISGEGVHVLEPLRGLRVLNFN 504
Query: 478 SCK 480
CK
Sbjct: 505 GCK 507
>gi|433448864|ref|ZP_20411729.1| Internalin A [Weissella ceti NC36]
gi|429539253|gb|ELA07290.1| Internalin A [Weissella ceti NC36]
Length = 1042
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 92/300 (30%), Positives = 148/300 (49%), Gaps = 28/300 (9%)
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD--SDMKPLSGLTNLKSLQISCSKVT 193
L +E + G+ +L GL E+ N+KW + + S ++PL + NL L + +K
Sbjct: 68 LKIESLNLTYSGVTDLSGLE--EAKNLKWLDLTGNAISSLEPLGQVHNLSFLSLRFNKTK 125
Query: 194 D-SGIAYLKGLQKLTLLNLEGC-----PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
D +A LK + LNL G P A + L+ L +L N QL D
Sbjct: 126 DIPDLAPLK-TTAIKELNLVGNDYGLEPQKMAAISHLTTLETLEMQNNKLTQLPD----- 179
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
S++ +L+ L + N++TD V K + L L ++S I D ++ L NL+ L +
Sbjct: 180 LSQLTNLRFLGVAGNKLTDVSGV--KNMVRLTGLEVNSNQITD--FEPISHLTNLERLHV 235
Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLA 366
+ + SS + L LT L+ N S G+S+ + AG+ ++SL +D QI+D L+
Sbjct: 236 GNNR--SSDISSLKTLTKLKKGNFSQMGLSNEQMTVFAGMKDMESLAIDFNDQISD--LS 291
Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLL 425
+L+ LT LT LD +T A L NL++L ++D V K++ +LSSLT+L
Sbjct: 292 SLSQLTNLTTLDFSKDGVT--SLAPLAGLTNLQTLGFSNNKVSDISVLKNMPNLSSLTML 349
>gi|290970032|ref|XP_002668015.1| predicted protein [Naegleria gruberi]
gi|284081037|gb|EFC35271.1| predicted protein [Naegleria gruberi]
Length = 224
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 102/197 (51%), Gaps = 2/197 (1%)
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
+ L L++ + IG+EG + + L L++ + S GL H++ L L+ + + +
Sbjct: 1 MRQLTCLSVSNNNIGNEGFKFICEMKQLTYLDVGRNDINSKGLNHITNLDKLKDLRIYYN 60
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
+ DG+ + ++ + L +LN++ I + G ++ L +T+L++ I + G ++
Sbjct: 61 SVGDGA-KYISEMKQLTNLNVNTACINEKGAKFISELPLVTNLNISFNEIGNQGLEHISR 119
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
K L L I + D GV + L LT L++S++ + +K +L+S + L L++S
Sbjct: 120 MKQLTHLNIQSNNIDDTGVYFLHGLDQLTTLDISKHI-IGEKGTKLLSEMEQLTHLDISE 178
Query: 455 SRITSAGLRHLKPLKNL 471
I G++H+ +KNL
Sbjct: 179 CCIQYEGVKHISEMKNL 195
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 95/192 (49%), Gaps = 1/192 (0%)
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
+ ++G + ++ L L++G N+I + L H+ L L+ L + +GD G ++ +
Sbjct: 14 IGNEGFKFICEMKQLTYLDVGRNDINSKGLNHITNLDKLKDLRIYYNSVGD-GAKYISEM 72
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
L L ++ + G + +S L + ++N+SF I + L ++ + L LN+ +
Sbjct: 73 KQLTNLNVNTACINEKGAKFISELPLVTNLNISFNEIGNQGLEHISRMKQLTHLNIQSNN 132
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
I DTG+ L L LT LD+ I + G L + L L+I + GVKHI ++
Sbjct: 133 IDDTGVYFLHGLDQLTTLDISKHIIGEKGTKLLSEMEQLTHLDISECCIQYEGVKHISEM 192
Query: 420 SSLTLLNLSQNC 431
+LT N+ NC
Sbjct: 193 KNLTYPNICLNC 204
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 107/225 (47%), Gaps = 5/225 (2%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+++LT L++ + + + L YL++ R ++ G + + LK L + +N
Sbjct: 1 MRQLTCLSVSNNNIGNEGFKFICEMKQLTYLDVGRNDINSKGLNHITNLDKLKDLRIYYN 60
Query: 263 EITD--ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
+ D + + +K LTNL N+++ I ++G ++ L + L +S ++G+ GL H+
Sbjct: 61 SVGDGAKYISEMKQLTNL---NVNTACINEKGAKFISELPLVTNLNISFNEIGNQGLEHI 117
Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
S + L +N+ I D + L GL L +L++ I + G L+ + LTHLD+
Sbjct: 118 SRMKQLTHLNIQSNNIDDTGVYFLHGLDQLTTLDISKHIIGEKGTKLLSEMEQLTHLDIS 177
Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
I G ++ KNL IC G K + ++ +L L
Sbjct: 178 ECCIQYEGVKHISEMKNLTYPNICLNCFGKGGAKCLCEMKNLIKL 222
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 110/249 (44%), Gaps = 27/249 (10%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
+ LT LS NN I +G K + L LD+ R +N K
Sbjct: 1 MRQLTCLSVSNNN-IGNEGFKFICEMKQLTYLDVGR-----------------NDINSKG 42
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N IT+ D LK L+I + V D G Y+ +++LT LN+ + +
Sbjct: 43 LNHITNLD--------KLKDLRIYYNSVGD-GAKYISEMKQLTNLNVNTACINEKGAKFI 93
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
S L + LN++ ++ + G E S++ L LN+ N I D + L GL L +L++
Sbjct: 94 SELPLVTNLNISFNEIGNQGLEHISRMKQLTHLNIQSNNIDDTGVYFLHGLDQLTTLDIS 153
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
IG++G L+ + L L++S+ + G++H+S + NL N+ G + L
Sbjct: 154 KHIIGEKGTKLLSEMEQLTHLDISECCIQYEGVKHISEMKNLTYPNICLNCFGKGGAKCL 213
Query: 345 AGLSSLKSL 353
+ +L L
Sbjct: 214 CEMKNLIKL 222
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 2/147 (1%)
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
+ L L++ I + G + + LT+LD+ I G ++ N L+ L I
Sbjct: 1 MRQLTCLSVSNNNIGNEGFKFICEMKQLTYLDVGRNDINSKGLNHITNLDKLKDLRIYYN 60
Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 466
+ D G K+I ++ LT LN++ C + +K + IS L + +LN+S + I + GL H+
Sbjct: 61 SVGD-GAKYISEMKQLTNLNVNTAC-INEKGAKFISELPLVTNLNISFNEIGNQGLEHIS 118
Query: 467 PLKNLRSLTLESCKVTANDIKRLQSRD 493
+K L L ++S + + L D
Sbjct: 119 RMKQLTHLNIQSNNIDDTGVYFLHGLD 145
>gi|887026|gb|AAA69527.1| internalin, partial [Listeria monocytogenes]
Length = 346
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 106/329 (32%), Positives = 165/329 (50%), Gaps = 39/329 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 26 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 79
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD + PL
Sbjct: 80 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LXPL 131
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 132 ANLTTLERLDISXNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 184
Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
+LN QL D G + + +L L+L N+I++ L L GLT L L L + I + +
Sbjct: 185 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLXGLTKLTELKLGANQISN--I 238
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353
L GL L LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 239 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 294
Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGA 382
+++D ++SL LT+++ A
Sbjct: 295 FFYNNKVSD-----VSSLANLTNINWLSA 318
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 122/270 (45%), Gaps = 56/270 (20%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 20 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 72
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 73 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 127
Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG---------- 412
L L +LT L LD+ +++D + L NL SL ++D
Sbjct: 128 --LXPLANLTTLERLDISXNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNLDE 183
Query: 413 -------VKHIKDLSSLTLL-----------NLSQNCNLTDKTLEL---------ISGLT 445
+K I L+SLT L NL+ LT K EL IS L
Sbjct: 184 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLXGLT-KLTELKLGANQISNISPLA 242
Query: 446 GLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
GL +L +N + L + P+ NL++LT
Sbjct: 243 GLTAL--TNLELNENQLEDISPISNLKNLT 270
>gi|290980890|ref|XP_002673164.1| predicted protein [Naegleria gruberi]
gi|284086746|gb|EFC40420.1| predicted protein [Naegleria gruberi]
Length = 287
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 130/270 (48%), Gaps = 4/270 (1%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
L +LT+LN+ + S+S L L L + Q+ + G S++ L L+L N
Sbjct: 16 LSQLTILNISNNQIGDLGAQSISELKLLKELFADNNQIGNTGVSFISQLKQLLKLSLMGN 75
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
+E + + + L L++ + I ++G + + L+ L +S TQ+GS G + +SG
Sbjct: 76 YFDNEGVYSISKMDQLTELDIGTNKIDEKGAQYIGEMKQLRKLFISGTQIGSEGAKAISG 135
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
L NL ++N+ ++ I + + G+ L L + +I + L LT L + G
Sbjct: 136 LPNLTNLNIGYSQIGIEGAKYVCGMHQLTQLGIGNSRIGVETAKLIGQLKHLTFLVIEGN 195
Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELI 441
I D GA Y+ K L+ L I G + G ++I L LT L++S CN D I
Sbjct: 196 NIGDEGAKYISEAK-LKKLVISNGRIGGEGAQYIAKLHQLTNLDIS--CNNVDTAGARSI 252
Query: 442 SGLTGLVSLNVSNSRITSAGLRHLKPLKNL 471
S L L L++S ++I S G R +K + L
Sbjct: 253 SKLPNLTILDISVNKIGSGGARLIKGMTQL 282
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 99/211 (46%), Gaps = 2/211 (0%)
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
++G SK+ L L++G N+I ++ ++ + L L + IG EG ++GL
Sbjct: 77 FDNEGVYSISKMDQLTELDIGTNKIDEKGAQYIGEMKQLRKLFISGTQIGSEGAKAISGL 136
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
NL L + +Q+G G +++ G+ L + + + I + + + L L L ++
Sbjct: 137 PNLTNLNIGYSQIGIEGAKYVCGMHQLTQLGIGNSRIGVETAKLIGQLKHLTFLVIEGNN 196
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
I D G A S L L + RI GA Y+ L +L+I + AG + I L
Sbjct: 197 IGDEG-AKYISEAKLKKLVISNGRIGGEGAQYIAKLHQLTNLDISCNNVDTAGARSISKL 255
Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
+LT+L++S N + LI G+T L +
Sbjct: 256 PNLTILDISVN-KIGSGGARLIKGMTQLTKV 285
>gi|290991576|ref|XP_002678411.1| predicted protein [Naegleria gruberi]
gi|284092023|gb|EFC45667.1| predicted protein [Naegleria gruberi]
Length = 153
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 75/145 (51%)
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
LN+G+NEIT E + + L SL + + I D+G L+ + L L +S+ + G
Sbjct: 7 LNIGYNEITVEGAKFISEMKQLTSLCIYNNEISDKGAKYLSEMKQLTSLNVSNNETSDEG 66
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
+H+S + L S+ + I D + ++ + L SLN+ +I+D G ++ + LT
Sbjct: 67 AKHISEMKQLTSLYIYDNQIGDKGAKYISEMKQLTSLNIGYNEISDEGAKYISEMKQLTL 126
Query: 377 LDLFGARITDSGAAYLRNFKNLRSL 401
L ++ I+D GA YL K L SL
Sbjct: 127 LYIYNNEISDKGAKYLSEMKQLTSL 151
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 1/152 (0%)
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
+ L S+N+ + I+ + ++ + L SL + +I+D G L+ + LT L++
Sbjct: 1 MKQLTSLNIGYNEITVEGAKFISEMKQLTSLCIYNNEISDKGAKYLSEMKQLTSLNVSNN 60
Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
+D GA ++ K L SL I + D G K+I ++ LT LN+ N ++D+ + IS
Sbjct: 61 ETSDEGAKHISEMKQLTSLYIYDNQIGDKGAKYISEMKQLTSLNIGYN-EISDEGAKYIS 119
Query: 443 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
+ L L + N+ I+ G ++L +K L SL
Sbjct: 120 EMKQLTLLYIYNNEISDKGAKYLSEMKQLTSL 151
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 77/152 (50%), Gaps = 1/152 (0%)
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
+ L L + ++ G + +S + L S+ + ISD + L+ + L SLN+
Sbjct: 1 MKQLTSLNIGYNEITVEGAKFISEMKQLTSLCIYNNEISDKGAKYLSEMKQLTSLNVSNN 60
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
+ +D G ++ + LT L ++ +I D GA Y+ K L SL I ++D G K+I +
Sbjct: 61 ETSDEGAKHISEMKQLTSLYIYDNQIGDKGAKYISEMKQLTSLNIGYNEISDEGAKYISE 120
Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
+ LTLL + N ++DK + +S + L SL
Sbjct: 121 MKQLTLLYIYNN-EISDKGAKYLSEMKQLTSL 151
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 75/151 (49%)
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
+ L SLN+ I EG ++ + L L + + ++ G ++LS + L S+N+S
Sbjct: 1 MKQLTSLNIGYNEITVEGAKFISEMKQLTSLCIYNNEISDKGAKYLSEMKQLTSLNVSNN 60
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
SD + ++ + L SL + QI D G ++ + LT L++ I+D GA Y+
Sbjct: 61 ETSDEGAKHISEMKQLTSLYIYDNQIGDKGAKYISEMKQLTSLNIGYNEISDEGAKYISE 120
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
K L L I ++D G K++ ++ LT L
Sbjct: 121 MKQLTLLYIYNNEISDKGAKYLSEMKQLTSL 151
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 1/152 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SLNI + N IT K +S + L SL I ++++D G YL +++LT LN+
Sbjct: 1 MKQLTSLNIGY-NEITVEGAKFISEMKQLTSLCIYNNEISDKGAKYLSEMKQLTSLNVSN 59
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ +S + L L + Q+ D G + S++ L LN+G+NEI+DE ++
Sbjct: 60 NETSDEGAKHISEMKQLTSLYIYDNQIGDKGAKYISEMKQLTSLNIGYNEISDEGAKYIS 119
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
+ L L + + I D+G L+ + L L
Sbjct: 120 EMKQLTLLYIYNNEISDKGAKYLSEMKQLTSL 151
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 24/175 (13%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+++LT LN+ +T +S + L L + ++SD G + S++ L LN+ N
Sbjct: 1 MKQLTSLNIGYNEITVEGAKFISEMKQLTSLCIYNNEISDKGAKYLSEMKQLTSLNVSNN 60
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
E +DE H+ + L SL + D Q+G G +++S
Sbjct: 61 ETSDEGAKHISEMKQLTSLY------------------------IYDNQIGDKGAKYISE 96
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
+ L S+N+ + ISD + ++ + L L + +I+D G L+ + LT L
Sbjct: 97 MKQLTSLNIGYNEISDEGAKYISEMKQLTLLYIYNNEISDKGAKYLSEMKQLTSL 151
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 76/151 (50%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L SL I +++T G ++ +++LT L + ++ LS + L LN++
Sbjct: 1 MKQLTSLNIGYNEITVEGAKFISEMKQLTSLCIYNNEISDKGAKYLSEMKQLTSLNVSNN 60
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
+ SD+G + S++ L L + N+I D+ ++ + L SLN+ I DEG ++
Sbjct: 61 ETSDEGAKHISEMKQLTSLYIYDNQIGDKGAKYISEMKQLTSLNIGYNEISDEGAKYISE 120
Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
+ L L + + ++ G ++LS + L S+
Sbjct: 121 MKQLTLLYIYNNEISDKGAKYLSEMKQLTSL 151
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 9/154 (5%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI---QISDGGLEHLRGLSNLTSLSFRR 115
L S+++ +++T G + + L SL CI +ISD G ++L + LTSL+
Sbjct: 4 LTSLNIGYNEITVEGAKFISEMKQLTSL----CIYNNEISDKGAKYLSEMKQLTSLNV-S 58
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
NN + +G K + + L L + G + + +L SLNI + N I+D K
Sbjct: 59 NNETSDEGAKHISEMKQLTSLYIYDNQIGDKGAKYISEMKQLTSLNIGY-NEISDEGAKY 117
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
+S + L L I ++++D G YL +++LT L
Sbjct: 118 ISEMKQLTLLYIYNNEISDKGAKYLSEMKQLTSL 151
>gi|158429244|pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 112/374 (29%), Positives = 174/374 (46%), Gaps = 64/374 (17%)
Query: 92 IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
I S+ L + L NLT L NN I + A L NL L L + +
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGLTL-----FNNQIT 120
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
++ L L +LN + T SD+ LSGLT+L+ L S ++VTD LK L LT
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTD-----LKPLANLT-- 173
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
LE +++ + +S L K + + SL N N+I+D +
Sbjct: 174 TLERLDISSNKVSDISVLA------------------KLTNLESLIATN---NQISD--I 210
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
L LTNL+ L+L+ + D G L L NL L+L++ Q+ S L LSGLT L +
Sbjct: 211 TPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPLSGLTKLTEL 266
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+ I+D
Sbjct: 267 KLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD--I 320
Query: 390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 449
+ + + L+ L ++D V + +L+++ L+ N IS LT L +
Sbjct: 321 SPVSSLTKLQRLFFSNNKVSD--VSSLANLTNINWLSAGHNQ---------ISDLTPLAN 369
Query: 450 LNVSNSRITSAGLR 463
L +RIT GL
Sbjct: 370 L----TRITQLGLN 379
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 122/253 (48%), Gaps = 43/253 (16%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 57 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 109
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ + Q+TD
Sbjct: 110 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTD 165
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 166 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 223
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 224 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 274
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 275 -NISPLAGLTALT 286
>gi|219821285|gb|ACL37768.1| internalin A [Listeria monocytogenes]
gi|219821315|gb|ACL37788.1| internalin A [Listeria monocytogenes]
gi|219821321|gb|ACL37792.1| internalin A [Listeria monocytogenes]
gi|219821327|gb|ACL37796.1| internalin A [Listeria monocytogenes]
gi|219821345|gb|ACL37808.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 171/376 (45%), Gaps = 58/376 (15%)
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
+ LKD + L + N QI+D + L L+NLT L+ NN IT + L NL
Sbjct: 55 ITPLKDLTKLVDIVMNNN-QITD--ISPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNL 108
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+L+L T + L GL L+ L+ N +TD +KPL+ LT L+ L IS +KV+
Sbjct: 109 NRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLERLDISSNKVS 162
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSK 250
D + L KLT NLE T + ++ LG +L L+LN QL D G +
Sbjct: 163 DISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LAS 213
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+ +L L++ N+I++ L L GLT L L L I + + + GL L LEL +
Sbjct: 214 LTNLTSLDVANNQISN--LAPLSGLTKLTELELGYNQISN--ISPIEGLTALTSLELHEN 269
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK----------------LAGLSSL 350
Q+ + +S L NL + L F ISD SL K LA L+++
Sbjct: 270 QL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNI 327
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEIC 404
L+ QI+D L L +LT ++ L L T+ Y N KN+ I
Sbjct: 328 NWLSAAHNQISD--LTPLANLTRISELGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIA 385
Query: 405 GGGLTDAGVKHIKDLS 420
++D G D++
Sbjct: 386 PATISDGGSYAEPDIT 401
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 124/253 (49%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD----EGLVNLTG 298
DG E + +L +N GFN++TD + LK LT L + +++ I D L NLTG
Sbjct: 34 DGLEY---LNNLTQINFGFNQLTD--ITPLKDLTKLVDIVMNNNQITDISPLANLTNLTG 88
Query: 299 LC----------------NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
L NL LELS + S + LSGLTNL+ LSF G L+
Sbjct: 89 LTLFNNQITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVTDLK 143
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
LA L++L+ L++ + +++D ++ L LT L L +I+D L NL L
Sbjct: 144 PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELS 199
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+++ N L +SGLT L L + ++I+
Sbjct: 200 LNGNQLKDIGT--LASLTNLTSLDVANNQ---ISNLAPLSGLTKLTELELGYNQIS---- 250
Query: 463 RHLKPLKNLRSLT 475
++ P++ L +LT
Sbjct: 251 -NISPIEGLTALT 262
>gi|428313363|ref|YP_007124340.1| Leucine Rich Repeat (LRR)-containing protein [Microcoleus sp. PCC
7113]
gi|428254975|gb|AFZ20934.1| Leucine Rich Repeat (LRR)-containing protein [Microcoleus sp. PCC
7113]
Length = 254
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 89/158 (56%), Gaps = 15/158 (9%)
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
L L+ +L L L+ Q++D +++ +LK L L ++ITD L L GLT LE
Sbjct: 88 LTPLAGFTNLEVLILDSNQITD--VTPLARLTNLKDLTLAGSQITD--LTPLAGLTKLEV 143
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
L L+S I D + L GL NLK L+L Q+ L L+GL NLE+++LS I+D
Sbjct: 144 LYLESNQIKD--INPLAGLANLKTLQLMYNQIAD--LTPLAGLKNLEALHLSGNQITD-- 197
Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
+ L GL +LK LNLD QITD +T L GL +LD
Sbjct: 198 ITPLGGLKNLKVLNLDNNQITD-----ITPLAGLANLD 230
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 97/196 (49%), Gaps = 39/196 (19%)
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
+ITD L L G TNLE L LDS I D + L L NLK L L+ +Q+ + L L+G
Sbjct: 84 QITD--LTPLAGFTNLEVLILDSNQITD--VTPLARLTNLKDLTLAGSQI--TDLTPLAG 137
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
LT LE + L I D + LAGL++LK+L L QI D LT L GL
Sbjct: 138 LTKLEVLYLESNQIKD--INPLAGLANLKTLQLMYNQIAD-----LTPLAGL-------- 182
Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
KNL +L + G +TD + + L +L +LNL N +TD T ++
Sbjct: 183 -------------KNLEALHLSGNQITD--ITPLGGLKNLKVLNLDNN-QITDIT--PLA 224
Query: 443 GLTGLVSLNVSNSRIT 458
GL L SL V + IT
Sbjct: 225 GLANLDSLYVPGNPIT 240
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 90/189 (47%), Gaps = 40/189 (21%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+D L L G +NL L +N IT + A L NL L L L L
Sbjct: 84 QITD--LTPLAGFTNLEVL-ILDSNQIT--DVTPLARLTNLKDLTLAGSQITD--LTPLA 136
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
GL KLE L ++ N I D+ PL+GL NLK+LQ+ +++ D + L GL+ L L+L
Sbjct: 137 GLTKLEVLYLE-SNQI--KDINPLAGLANLKTLQLMYNQIAD--LTPLAGLKNLEALHLS 191
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
G +T ++ LG L +LKVLNL N+ITD + L
Sbjct: 192 GNQIT-----DITPLGGL---------------------KNLKVLNLDNNQITD--ITPL 223
Query: 273 KGLTNLESL 281
GL NL+SL
Sbjct: 224 AGLANLDSL 232
>gi|312385235|gb|EFR29787.1| hypothetical protein AND_01026 [Anopheles darlingi]
Length = 627
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 147/333 (44%), Gaps = 38/333 (11%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER--CTRIHGG-LVNLKGLMKLESL 160
GL L ++ RNN IT M+ F G NL++LDL R R+ G +LK L L +
Sbjct: 130 GLVRLKTIDLSRNN-ITQLSMENFRGQDNLLELDLSRNRLERVASGTFAHLKELKTLHMI 188
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+ + I + + + L LK L +S + + D K +Q L + GC ++
Sbjct: 189 D----SSINELNTRLFLHLAKLKYLDLSMNSIEDLAPEVFKDVQDLKTFKVRGCRLSNVN 244
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE---ITDECLVHLKGLTN 277
+ L L L+L + Q E+F + L+ L L N+ I DE +H KGLT
Sbjct: 245 PQIYNILSHLTELDLGQNQFKFLDKEEFKDLRHLRKLRLDGNQLSVIVDELFLHQKGLTF 304
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L+ I D NL NL L++S ++ L L NL+++N+S
Sbjct: 305 LDISRNRLAKIADRAFENLV---NLTFLDVSYNKLSHIEPVCLRPLRNLQTLNIS----- 356
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
G+L L+ ++ + I+ +A L SL L+LF FK
Sbjct: 357 -GNL--ALDLTEMEDTIQTVKDISSLVIADLGSLP----LNLFTP------------FKR 397
Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
L +L + G + + ++ I+ L+ L L+LS+N
Sbjct: 398 LTALNLSGNHIDNITIQIIEPLAQLEFLDLSRN 430
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 76/330 (23%), Positives = 137/330 (41%), Gaps = 41/330 (12%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
NL+ L++ S V G GL +L ++L +T +++ +L L+L+R
Sbjct: 107 FKNLEILRVVESNVPSIGDRSFWGLVRLKTIDLSRNNITQLSMENFRGQDNLLELDLSRN 166
Query: 239 QLSDDGCEKFSKIGSLKVLNL---GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
+L F+ + LK L++ NE+ +HL L+ L+L I D
Sbjct: 167 RLERVASGTFAHLKELKTLHMIDSSINELNTRLFLHL---AKLKYLDLSMNSIEDLAPEV 223
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
+ +LK ++ ++ + + + L++L ++L + L L+ L L
Sbjct: 224 FKDVQDLKTFKVRGCRLSNVNPQIYNILSHLTELDLGQNQFKFLDKEEFKDLRHLRKLRL 283
Query: 356 DARQITDTGLAALTSLTGLTHLDLFG---ARITDSG-----------AAY---------- 391
D Q++ GLT LD+ A+I D +Y
Sbjct: 284 DGNQLSVIVDELFLHQKGLTFLDISRNRLAKIADRAFENLVNLTFLDVSYNKLSHIEPVC 343
Query: 392 LRNFKNLRSLEICGG---GLTDA--GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 446
LR +NL++L I G LT+ ++ +KD+SSL + +L L L +
Sbjct: 344 LRPLRNLQTLNISGNLALDLTEMEDTIQTVKDISSLVI------ADLGSLPLNLFTPFKR 397
Query: 447 LVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
L +LN+S + I + ++ ++PL L L L
Sbjct: 398 LTALNLSGNHIDNITIQIIEPLAQLEFLDL 427
Score = 42.0 bits (97), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 110/252 (43%), Gaps = 27/252 (10%)
Query: 20 LTEVSLEAFRDCALQDLCLGQYPG-----VNDKWMDVIASQGSSLLSVDLSGSDVTDSGL 74
+ +++ E F+D +QDL + G VN + +++ S L +DL +
Sbjct: 216 IEDLAPEVFKD--VQDLKTFKVRGCRLSNVNPQIYNIL----SHLTELDLGQNQFKFLDK 269
Query: 75 IHLKDCSNLQSL--DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132
KD +L+ L D N I D H +GL T L RN + +AF L+N
Sbjct: 270 EEFKDLRHLRKLRLDGNQLSVIVDELFLHQKGL---TFLDISRNR-LAKIADRAFENLVN 325
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
L LD+ H V L+ L L++LNI + ++M+ + +K IS +
Sbjct: 326 LTFLDVSYNKLSHIEPVCLRPLRNLQTLNISGNLALDLTEME--DTIQTVKD--ISSLVI 381
Query: 193 TDSG---IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL---SDDGCE 246
D G + ++LT LNL G + + + L L +L+L+R QL +
Sbjct: 382 ADLGSLPLNLFTPFKRLTALNLSGNHIDNITIQIIEPLAQLEFLDLSRNQLNGIPERYAA 441
Query: 247 KFSKIGSLKVLN 258
+ S+I +K+ N
Sbjct: 442 QLSRIADVKLEN 453
>gi|158429246|pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 112/374 (29%), Positives = 174/374 (46%), Gaps = 64/374 (17%)
Query: 92 IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
I S+ L + L NLT L NN I + A L NL L L + +
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGLTL-----FNNQIT 120
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
++ L L +LN + T SD+ LSGLT+L+ L S ++VTD LK L LT
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTD-----LKPLANLT-- 173
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
LE +++ + +S L K + + SL N N+I+D +
Sbjct: 174 TLERLDISSNKVSDISVLA------------------KLTNLESLIATN---NQISD--I 210
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
L LTNL+ L+L+ + D G L L NL L+L++ Q+ S L LSGLT L +
Sbjct: 211 TPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPLSGLTKLTEL 266
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+ I+D
Sbjct: 267 KLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD--I 320
Query: 390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 449
+ + + L+ L ++D V + +L+++ L+ N IS LT L +
Sbjct: 321 SPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ---------ISDLTPLAN 369
Query: 450 LNVSNSRITSAGLR 463
L +RIT GL
Sbjct: 370 L----TRITQLGLN 379
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 122/253 (48%), Gaps = 43/253 (16%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 57 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 109
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ LN + Q+TD
Sbjct: 110 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTD 165
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 166 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 223
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 224 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 274
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 275 -NISPLAGLTALT 286
>gi|219821270|gb|ACL37758.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 171/376 (45%), Gaps = 58/376 (15%)
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
+ LKD + L + N QI+D + L L+NLT L+ NN IT + L NL
Sbjct: 55 ITPLKDLTKLVDIVMNNN-QITD--ISPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNL 108
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+L+L T + L GL L+ L+ N +TD +KPL+ LT L+ L IS +KV+
Sbjct: 109 NRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLERLDISSNKVS 162
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSK 250
D + L KLT NLE T + ++ LG +L L+LN QL D G +
Sbjct: 163 DISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LAS 213
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+ +L L++ N+I++ L L GLT L L L I + + + GL L LEL +
Sbjct: 214 LTNLTSLDVANNQISN--LAPLSGLTKLTELELGYNQISN--ISPIEGLTALTSLELHEN 269
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK----------------LAGLSSL 350
Q+ + +S L NL + L F ISD SL K LA L+++
Sbjct: 270 QL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNI 327
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEIC 404
L+ QI+D L L +LT ++ L L T+ Y N KN+ I
Sbjct: 328 NWLSAAHNQISD--LTPLANLTRISELGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIA 385
Query: 405 GGGLTDAGVKHIKDLS 420
++D G D++
Sbjct: 386 PATISDGGSYAEPDIT 401
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 124/253 (49%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD----EGLVNLTG 298
DG E + +L +N GFN++TD + LK LT L + +++ I D L NLTG
Sbjct: 34 DGLEY---LNNLTQINFGFNQLTD--ITPLKDLTKLVDIVMNNNQITDISPLANLTNLTG 88
Query: 299 LC----------------NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
L NL LELS + S + LSGLTNL+ LSF G L+
Sbjct: 89 LTLFNNQITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVTDLK 143
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
LA L++L+ L++ + +++D ++ L LT L L +I+D L NL L
Sbjct: 144 PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELS 199
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+++ N L +SGLT L L + ++I+
Sbjct: 200 LNGNQLKDIGT--LASLTNLTSLDVANNQ---ISNLAPLSGLTKLTELELGYNQIS---- 250
Query: 463 RHLKPLKNLRSLT 475
++ P++ L +LT
Sbjct: 251 -NISPIEGLTALT 262
>gi|167523190|ref|XP_001745932.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775733|gb|EDQ89356.1| predicted protein [Monosiga brevicollis MX1]
Length = 2039
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 116/474 (24%), Positives = 174/474 (36%), Gaps = 89/474 (18%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
NLQ+LD ++ + GLS LTSL+ + I + AF GL L +LDL
Sbjct: 453 NLQTLDLEDS-SLTTLPAQAFAGLSRLTSLALKSRAKIANMAVNAFVGLDRLPELDLSN- 510
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
I + D+ SGLT+L L +S +++
Sbjct: 511 ------------------------QAIQEIDIGMFSGLTSLTKLDLSNNRLNTIQSTAFN 546
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD---DGCEKFSKIGSLKVLN 258
L+ L+ LN G P + L L LNL+ C +S E S++ SL +
Sbjct: 547 PLENLSALNFAGNPFNGVAASAFRGLTQLTALNLSHCNVSTLIGGTFETLSRVTSLDLSG 606
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
+ + + L L L+ N+ + L L LK L T + SS
Sbjct: 607 IKLRTLPSQAFAGLSALPELDLSNMRITTVAGNAFAGLDALTTLKLLGNPITTIESSAFA 666
Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG-------------- 364
+L L+++NLS G+S L +L++L L Q+ G
Sbjct: 667 NLPA---LKALNLSHLGLSVLPANTFVNLPALQNLTLTGNQLATLGASNQPAFVACPRIR 723
Query: 365 --------LAALTS-----LTGLTHLDLFGARITDSGAAYLRNFK--------------- 396
L A+T+ LTGLT L+L IT N
Sbjct: 724 SLDLSMQKLTAITAHAFSGLTGLTSLNLRNNLITSLATGAFANLSAELASNAPSTLAHVL 783
Query: 397 ------------NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 444
+ L+I LT LS+L L+L+ N +T L + SGL
Sbjct: 784 YLLVCFAALIKCQVTQLDIRNNKLTALASSSFDGLSALQSLSLA-NMAITKLPLGVFSGL 842
Query: 445 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 498
L L + + + G L PL L +L L S ++T K L S+ P+L+
Sbjct: 843 NALQVLRLDGTGVQEIGAMVLAPLSQLSTLWLNSSQLTTITTKWLASK--PHLM 894
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 97/372 (26%), Positives = 138/372 (37%), Gaps = 76/372 (20%)
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
RNN IT+ AF L+NL LDLE + GL +L SL +K I + +
Sbjct: 436 RNNPITSLAGSAFVELLNLQTLDLEDSSLTTLPAQAFAGLSRLTSLALKSRAKIANMAVN 495
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
GL L L +S + + I GL LT L+L
Sbjct: 496 AFVGLDRLPELDLSNQAIQEIDIGMFSGLTSLTKLDLSNN-------------------R 536
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD---- 290
LN Q F+ + +L LN N +GLT L +LNL C +
Sbjct: 537 LNTIQ-----STAFNPLENLSALNFAGNPFNGVAASAFRGLTQLTALNLSHCNVSTLIGG 591
Query: 291 --EGLVNLT------------------GLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
E L +T GL L L+LS+ ++ + +GL L ++
Sbjct: 592 TFETLSRVTSLDLSGIKLRTLPSQAFAGLSALPELDLSNMRITTVAGNAFAGLDALTTLK 651
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
L I+ A L +LK+LNL ++ +L L +L L G ++ GA+
Sbjct: 652 LLGNPITTIESSAFANLPALKALNLSHLGLSVLPANTFVNLPALQNLTLTGNQLATLGAS 711
Query: 391 YLRNF---KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
F +RSL++ LT T SGLTGL
Sbjct: 712 NQPAFVACPRIRSLDLS-------------------------MQKLTAITAHAFSGLTGL 746
Query: 448 VSLNVSNSRITS 459
SLN+ N+ ITS
Sbjct: 747 TSLNLRNNLITS 758
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 101/436 (23%), Positives = 169/436 (38%), Gaps = 62/436 (14%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC---TRIHGGLVNLKGLMKLESLN 161
L NL++L+F N AF GL L L+L C T I G L + L+
Sbjct: 548 LENLSALNFA-GNPFNGVAASAFRGLTQLTALNLSHCNVSTLIGGTFETLSRVTSLDLSG 606
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
IK + + +GL+ L L +S ++T GL LT L L G P+T
Sbjct: 607 IKLRTLPSQA----FAGLSALPELDLSNMRITTVAGNAFAGLDALTTLKLLGNPITTIES 662
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL--------------------------- 254
+ + L +L LNL+ LS F + +L
Sbjct: 663 SAFANLPALKALNLSHLGLSVLPANTFVNLPALQNLTLTGNQLATLGASNQPAFVACPRI 722
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDS---CGIGDEGLVNLTG------------- 298
+ L+L ++T GLT L SLNL + + NL+
Sbjct: 723 RSLDLSMQKLTAITAHAFSGLTGLTSLNLRNNLITSLATGAFANLSAELASNAPSTLAHV 782
Query: 299 -----------LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
C + L++ + ++ + GL+ L+S++L+ I+ L +GL
Sbjct: 783 LYLLVCFAALIKCQVTQLDIRNNKLTALASSSFDGLSALQSLSLANMAITKLPLGVFSGL 842
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
++L+ L LD + + G L L+ L+ L L +++T +L + +L +++
Sbjct: 843 NALQVLRLDGTGVQEIGAMVLAPLSQLSTLWLNSSQLTTITTKWLASKPHLMQVDLSHTQ 902
Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 467
L +DL +L +NL LT + L L SL VS + + L
Sbjct: 903 LQKVPTFAFEDLPALEAINLDNTAALTTVEGSAFANLPRLQSLVVSGGSLETWASNALVD 962
Query: 468 LKNLRSLTLESCKVTA 483
+L +LT+ ++ A
Sbjct: 963 CPSLTTLTISHQRLAA 978
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 115/469 (24%), Positives = 186/469 (39%), Gaps = 104/469 (22%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+++ SGLIHL D + GLS++TSL NA+ G AF
Sbjct: 1495 NLSHSGLIHLPD--------------------QAFEGLSHVTSLDLS-GNALQWVGQAAF 1533
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
G++ L LDL + G ++ L KL SL K + L L L +L +
Sbjct: 1534 QGMVALTTLDLSDTQLLALGNASVAHLPKLTSL--KLPTTLRQLASAALLDLPQLATLDL 1591
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
S ++V L L KL DSL SL L GC
Sbjct: 1592 SATQVQQLASGALSNLAKL---------------DSLIVSPSLETLV--------PGC-- 1626
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
F+ + + L+L ++ L GL LE++NL + G + G +L ++L
Sbjct: 1627 FTNMTGVTSLDLAGTQLAQLEAQVLTGLPALETINLSVSAVRTLGPLAFAGPTSLSAVDL 1686
Query: 308 SDTQV----------------------GSSGL-------RHLSGLTNLESINLSFTGISD 338
S+T + S+G+ GL++L +++LS I+
Sbjct: 1687 SNTMIEAWTTNNASQGPFSKSTAIVSLSSAGMVLKTLTPHGFDGLSHLSAMDLSAADITS 1746
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTG-------------------LAALTS-----LTGL 374
AGLS++ +L L+ ++T G LA L + LT L
Sbjct: 1747 IPALAFAGLSNVTALLLNVSRLTQLGSQGFTGLNHLLTLDLSNAPLATLPASGFAGLTTL 1806
Query: 375 THLDLFGARITDSGAAYLRNFK-NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
L++ GA +T A + L+ L++ G L K +S L L LS N +
Sbjct: 1807 QTLNMSGAHVTALPADAFQGLNVQLKDLDLSGNKLARLEAAAFKAVSGLQRLYLSGN-QI 1865
Query: 434 TDKTLELISGLTGLVSLNVSNSRITSA-GLRHLKPLKNLRSLTLESCKV 481
T + + GL+ L+ L++S++ + + + L PL +L+ L L + K+
Sbjct: 1866 TQVDAQALGGLSTLIHLDLSDNALAAPLNVSVLAPLTSLQQLCLGNVKI 1914
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 116/460 (25%), Positives = 188/460 (40%), Gaps = 57/460 (12%)
Query: 80 CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN-AITAQGMKAFAGLINLVKLDL 138
S LQ+LD ++ ISD G GL+NLT L N A+ +G AFAGL + LDL
Sbjct: 987 ASGLQALDLSYN-NISDIGKNAFVGLNNLTQLHIEGNPIAVLEEG--AFAGLRRVQALDL 1043
Query: 139 ERC------TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
T + + L + SL N L+ L L S+ S +K+
Sbjct: 1044 AATAFTILPTNVFANMSALGQVTLPASLATLQSNA--------LAHLPMLASVDFSHTKL 1095
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
+ L L +LT + L +TA ++LS L L+L+ QL+
Sbjct: 1096 SALPEYSLVDLPRLTTVALPPNRLTAVAANALSDCPGLLSLDLSNQQLTTLETNFLIGAT 1155
Query: 253 SLKVLNLGFNE----ITDECL--------------------VHLKGLTNLESLNLDSCGI 288
L+ LNL N + E +H + +L+L + +
Sbjct: 1156 HLQALNLSHNSKLEAVQSEAFAGLTRLTTLDLTGVVLTSLALHAFSYLRITNLDLSTTQL 1215
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
D L L L ++L T + + R L L S++L T + L+GL+
Sbjct: 1216 ADLPTEALWNLPELAAVQLPAT-LTTLNKRSFYQLPALRSLDLRHTKVKALPTEALSGLT 1274
Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG-- 406
+ L L Q+T G A+ LT +DL G +T A+ N ++ ++++
Sbjct: 1275 NFTQLQLAPAQLTSWGSNAIAQCPALTKVDLAGQALTRIPASAFANLSHVVTIDLSDNLV 1334
Query: 407 -GLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
+AG K ++SL L++ + NLT+ + + G+ +L++S++++T
Sbjct: 1335 LTTIEAGAFVGTKQVTSLQLVH-TPLTNLTNGSFTTL----GVATLDLSDAKLTQLPGDA 1389
Query: 465 LKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS--FRP 502
+ L L SL L S T N + LP LV+ RP
Sbjct: 1390 VSQLPALTSLQLPS---TLNVLDSDAFHALPKLVTVDLRP 1426
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 100/392 (25%), Positives = 163/392 (41%), Gaps = 26/392 (6%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ER 140
L+SLD ++ E L GL+N T L +T+ G A A L K+DL +
Sbjct: 1252 LRSLDLRHT-KVKALPTEALSGLTNFTQLQLAPAQ-LTSWGSNAIAQCPALTKVDLAGQA 1309
Query: 141 CTRIHG-GLVNLKGLMKLE-SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
TRI NL ++ ++ S N+ +T + G + SLQ+ + +T+
Sbjct: 1310 LTRIPASAFANLSHVVTIDLSDNL----VLTTIEAGAFVGTKQVTSLQLVHTPLTNLTNG 1365
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
L TL +L +T D++S L +L L L L+ + F + L ++
Sbjct: 1366 SFTTLGVATL-DLSDAKLTQLPGDAVSQLPALTSLQLPST-LNVLDSDAFHALPKLVTVD 1423
Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
L ++ + L L+S+ L + + + + L L LS + S
Sbjct: 1424 LRPTSVSHLPTGAFRDLPALQSIQLRGQQLTALDSMVWSAVPRLTALNLSQQALVSVAPA 1483
Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
GL +L +NLS +G+ + GLS + SL+L + G AA + LT LD
Sbjct: 1484 PFVGLASLTQLNLSHSGLIHLPDQAFEGLSHVTSLDLSGNALQWVGQAAFQGMVALTTLD 1543
Query: 379 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL---TD 435
L ++ G A + + L SL++ ++ L+S LL+L Q L
Sbjct: 1544 LSDTQLLALGNASVAHLPKLTSLKLP---------TTLRQLASAALLDLPQLATLDLSAT 1594
Query: 436 KTLELISGLTGLVSLNVSNSRITSAGLRHLKP 467
+ +L SG L +L +S I S L L P
Sbjct: 1595 QVQQLASG--ALSNLAKLDSLIVSPSLETLVP 1624
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 127/558 (22%), Positives = 215/558 (38%), Gaps = 94/558 (16%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYP-----GVNDKWMDVIASQG 56
LP ++ N L + L V + AL + L P + + +A+
Sbjct: 1067 LPASLATLQSNALAHLPMLASVDFSHTKLSALPEYSLVDLPRLTTVALPPNRLTAVAANA 1126
Query: 57 SS----LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
S LLS+DLS +T +L+ NF I G ++L +L+
Sbjct: 1127 LSDCPGLLSLDLSNQQLT--------------TLETNFLI-----------GATHLQALN 1161
Query: 113 FRRNNAITAQGMKAFAGL----------INLVKLDLE-----RCTRIHGGLVNL-----K 152
N+ + A +AFAGL + L L L R T + L +
Sbjct: 1162 LSHNSKLEAVQSEAFAGLTRLTTLDLTGVVLTSLALHAFSYLRITNLDLSTTQLADLPTE 1221
Query: 153 GLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
L L L ++ +T + + L L+SL + +KV L GL T L L
Sbjct: 1222 ALWNLPELAAVQLPATLTTLNKRSFYQLPALRSLDLRHTKVKALPTEALSGLTNFTQLQL 1281
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL------------ 259
+T+ ++++ +L ++L L+ F+ + + ++L
Sbjct: 1282 APAQLTSWGSNAIAQCPALTKVDLAGQALTRIPASAFANLSHVVTIDLSDNLVLTTIEAG 1341
Query: 260 ---GFNEITDECLVHLKGLTNLESLNLDSCGIG-----DEGLVNLTG-----LCNLKCLE 306
G ++T LVH LTNL + + + G+ D L L G L L L+
Sbjct: 1342 AFVGTKQVTSLQLVHTP-LTNLTNGSFTTLGVATLDLSDAKLTQLPGDAVSQLPALTSLQ 1400
Query: 307 LSDT-QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
L T V S H L L +++L T +S L +L+S+ L +Q+T
Sbjct: 1401 LPSTLNVLDSDAFH--ALPKLVTVDLRPTSVSHLPTGAFRDLPALQSIQLRGQQLTALDS 1458
Query: 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
+++ LT L+L + A +L L + GL + + LS +T L
Sbjct: 1459 MVWSAVPRLTALNLSQQALVSVAPAPFVGLASLTQLNLSHSGLIHLPDQAFEGLSHVTSL 1518
Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 485
+LS N L G+ L +L++S++++ + G + L L SL L +
Sbjct: 1519 DLSGNA-LQWVGQAAFQGMVALTTLDLSDTQLLALGNASVAHLPKLTSLKLPTT------ 1571
Query: 486 IKRLQSR---DLPNLVSF 500
+++L S DLP L +
Sbjct: 1572 LRQLASAALLDLPQLATL 1589
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 91/371 (24%), Positives = 149/371 (40%), Gaps = 40/371 (10%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGL--INLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
GLS L SLS N AIT + F+GL + +++LD I G +V L L L+
Sbjct: 817 GLSALQSLSLA-NMAITKLPLGVFSGLNALQVLRLDGTGVQEI-GAMV----LAPLSQLS 870
Query: 162 IKWCNC--ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP---- 215
W N +T K L+ +L + +S +++ + L L +NL+
Sbjct: 871 TLWLNSSQLTTITTKWLASKPHLMQVDLSHTQLQKVPTFAFEDLPALEAINLDNTAALTT 930
Query: 216 VTAACLDSLSALGSLFY---------------------LNLNRCQLSDDGCEKFSKIGSL 254
V + +L L SL L ++ +L+ E F+ L
Sbjct: 931 VEGSAFANLPRLQSLVVSGGSLETWASNALVDCPSLTTLTISHQRLAALPTEAFAGASGL 990
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQV 312
+ L+L +N I+D GL NL L+++ I +EG GL ++ L+L+ T
Sbjct: 991 QALDLSYNNISDIGKNAFVGLNNLTQLHIEGNPIAVLEEG--AFAGLRRVQALDLAATAF 1048
Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
+ ++ L + L ++ LA L L S++ +++ +L L
Sbjct: 1049 TILPTNVFANMSALGQVTLP-ASLATLQSNALAHLPMLASVDFSHTKLSALPEYSLVDLP 1107
Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
LT + L R+T A L + L SL++ LT + + L LNLS N
Sbjct: 1108 RLTTVALPPNRLTAVAANALSDCPGLLSLDLSNQQLTTLETNFLIGATHLQALNLSHNSK 1167
Query: 433 LTDKTLELISG 443
L E +G
Sbjct: 1168 LEAVQSEAFAG 1178
>gi|320169490|gb|EFW46389.1| hypothetical protein CAOG_04357 [Capsaspora owczarzaki ATCC 30864]
Length = 620
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 129/296 (43%), Gaps = 5/296 (1%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINL--VKLDLERCTRIHGGLVNLKGLMKLESLN 161
G+ T + NN I + AF+GL L + LD + T I L LE L
Sbjct: 54 GIPVTTRALYLSNNQIASIPAYAFSGLTALTWLYLDSNQITSISASA--FSDLTSLEQLR 111
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
++ N IT +GLT + L ++ +++T GL L L L +T+
Sbjct: 112 MEE-NQITSISDGAFTGLTAVLELGLNRNQITSISANAFTGLTGLHFLELSNNQLTSIPS 170
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
+++ +L L L + +++ F+ + +LK L L N IT +GL+ L L
Sbjct: 171 SVFASVTTLLDLLLYKNRITSIPTSAFTTLTALKTLRLYDNPITSISANAFEGLSALTVL 230
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
+L S I + TGL L+ L L Q+ + +GLT ++++ L I+ S
Sbjct: 231 HLSSNHITSILPSSFTGLTALEALLLDKNQISNIPASAFTGLTAMQTLYLDSNRITSIST 290
Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
GL++L + LD+ QIT A T LT LT+L L G T + N
Sbjct: 291 NAFTGLTALTYMYLDSNQITRIPANAFTGLTALTYLTLDGNPFTTLPPGLFKGLPN 346
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 105/229 (45%), Gaps = 1/229 (0%)
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314
+ L L N+I GLT L L LDS I + L +L+ L + + Q+ S
Sbjct: 60 RALYLSNNQIASIPAYAFSGLTALTWLYLDSNQITSISASAFSDLTSLEQLRMEENQITS 119
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
+GLT + + L+ I+ S GL+ L L L Q+T + S+T L
Sbjct: 120 ISDGAFTGLTAVLELGLNRNQITSISANAFTGLTGLHFLELSNNQLTSIPSSVFASVTTL 179
Query: 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
L L+ RIT + L++L + +T + LS+LT+L+LS N ++T
Sbjct: 180 LDLLLYKNRITSIPTSAFTTLTALKTLRLYDNPITSISANAFEGLSALTVLHLSSN-HIT 238
Query: 435 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 483
+GLT L +L + ++I++ L +++L L+S ++T+
Sbjct: 239 SILPSSFTGLTALEALLLDKNQISNIPASAFTGLTAMQTLYLDSNRITS 287
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 107/265 (40%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N I SGLT L L + +++T + L L L +E +T+ + +
Sbjct: 67 NQIASIPAYAFSGLTALTWLYLDSNQITSISASAFSDLTSLEQLRMEENQITSISDGAFT 126
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L ++ L LNR Q++ F+ + L L L N++T +T L L L
Sbjct: 127 GLTAVLELGLNRNQITSISANAFTGLTGLHFLELSNNQLTSIPSSVFASVTTLLDLLLYK 186
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
I T L LK L L D + S GL+ L ++LS I+
Sbjct: 187 NRITSIPTSAFTTLTALKTLRLYDNPITSISANAFEGLSALTVLHLSSNHITSILPSSFT 246
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
GL++L++L LD QI++ +A T LT + L L RIT L + +
Sbjct: 247 GLTALEALLLDKNQISNIPASAFTGLTAMQTLYLDSNRITSISTNAFTGLTALTYMYLDS 306
Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQN 430
+T L++LT L L N
Sbjct: 307 NQITRIPANAFTGLTALTYLTLDGN 331
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 108/250 (43%), Gaps = 1/250 (0%)
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
L L+ Q++ FS + +L L L N+IT LT+LE L ++ I
Sbjct: 62 LYLSNNQIASIPAYAFSGLTALTWLYLDSNQITSISASAFSDLTSLEQLRMEENQITSIS 121
Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
TGL + L L+ Q+ S +GLT L + LS ++ A +++L
Sbjct: 122 DGAFTGLTAVLELGLNRNQITSISANAFTGLTGLHFLELSNNQLTSIPSSVFASVTTLLD 181
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
L L +IT +A T+LT L L L+ IT A L L + +T
Sbjct: 182 LLLYKNRITSIPTSAFTTLTALKTLRLYDNPITSISANAFEGLSALTVLHLSSNHITSIL 241
Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 472
L++L L L +N +++ +GLT + +L + ++RITS L L
Sbjct: 242 PSSFTGLTALEALLLDKN-QISNIPASAFTGLTAMQTLYLDSNRITSISTNAFTGLTALT 300
Query: 473 SLTLESCKVT 482
+ L+S ++T
Sbjct: 301 YMYLDSNQIT 310
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 107/255 (41%), Gaps = 1/255 (0%)
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
+ S L +L +L L+ Q++ FS + SL+ L + N+IT GLT + L
Sbjct: 76 AFSGLTALTWLYLDSNQITSISASAFSDLTSLEQLRMEENQITSISDGAFTGLTAVLELG 135
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
L+ I TGL L LELS+ Q+ S + +T L + L I+
Sbjct: 136 LNRNQITSISANAFTGLTGLHFLELSNNQLTSIPSSVFASVTTLLDLLLYKNRITSIPTS 195
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
L++LK+L L IT A L+ LT L L IT + L +L
Sbjct: 196 AFTTLTALKTLRLYDNPITSISANAFEGLSALTVLHLSSNHITSILPSSFTGLTALEALL 255
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ +++ L+++ L L N +T + +GLT L + + +++IT
Sbjct: 256 LDKNQISNIPASAFTGLTAMQTLYLDSN-RITSISTNAFTGLTALTYMYLDSNQITRIPA 314
Query: 463 RHLKPLKNLRSLTLE 477
L L LTL+
Sbjct: 315 NAFTGLTALTYLTLD 329
>gi|424713203|ref|YP_007013918.1| Internalin-I [Listeria monocytogenes serotype 4b str. LL195]
gi|424012387|emb|CCO62927.1| Internalin-I [Listeria monocytogenes serotype 4b str. LL195]
Length = 1631
Score = 75.5 bits (184), Expect = 6e-11, Method: Composition-based stats.
Identities = 117/422 (27%), Positives = 189/422 (44%), Gaps = 73/422 (17%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+E L+ L NLTSL+ NN + L+NLV L+L + LVNL G
Sbjct: 28 IEGLQYLENLTSLNLSENN---ISDLAPIKDLVNLVSLNLSS----NRTLVNLSG----- 75
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+ GL NL+ L +S +K + I+ + L L ++ +GC +
Sbjct: 76 -----------------VEGLVNLQELNVSANKALED-ISQVAALPVLKEISAQGCNIKT 117
Query: 219 ACLDSLSA--LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
LD+ + L L L L+D +K+ LK L + N + + L LKG T
Sbjct: 118 LELDNPAGAILPELETFYLQENDLTD--LTSLAKLPKLKNLYIKGNA-SLKSLATLKGAT 174
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES-INLSFTG 335
L+ ++ +C E L +++GL L+ ++LS G S L+ ++ L +L + +N++
Sbjct: 175 KLQLIDASNC-TDLETLGDISGLSELEMIQLS----GCSKLKEITSLKDLPNLVNITADS 229
Query: 336 ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
+ L L L L++L L D + +T+ + A+T + L L L G IT G L N
Sbjct: 230 CAIEDLGTLNNLPKLQTLILSDNKDLTN--INAITDMPQLKTLALDGCGITSIGT--LDN 285
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN----------------CNLTDKTL 438
L L++ LT + I DL L+ L++S N N++ L
Sbjct: 286 LPKLEKLDLKENQLTS--ISEINDLPRLSYLDVSVNYLTTIGELKKLPLLEWLNVSSNRL 343
Query: 439 ELISGLTGLVSL---NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP 495
+S LT SL NVSN+ I + G + L +L+ ++ V+ DI + D+P
Sbjct: 344 SDVSTLTNFPSLNYINVSNNVIRTVG--KMTELPSLKEFYAQNNNVS--DISMIH--DMP 397
Query: 496 NL 497
NL
Sbjct: 398 NL 399
Score = 55.1 bits (131), Expect = 8e-05, Method: Composition-based stats.
Identities = 125/494 (25%), Positives = 209/494 (42%), Gaps = 91/494 (18%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L + LSG + LKD NL ++ + C I D G L L L +L N
Sbjct: 197 SELEMIQLSGCSKLKE-ITSLKDLPNLVNITADSC-AIEDLGT--LNNLPKLQTLILSDN 252
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T + A + L L L+ C G L L KLE L++K + S+ +
Sbjct: 253 KDLT--NINAITDMPQLKTLALDGCGITSIG--TLDNLPKLEKLDLKENQLTSISE---I 305
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ L L L +S + +T I LK L L LN+ ++ + +L+ SL Y+N++
Sbjct: 306 NDLPRLSYLDVSVNYLTT--IGELKKLPLLEWLNVSSNRLSD--VSTLTNFPSLNYINVS 361
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+ G K +++ SLK N ++D ++H + NL ++ + I + G
Sbjct: 362 NNVIRTVG--KMTELPSLKEFYAQNNNVSDISMIH--DMPNLRKVDASNNLITNIG--TF 415
Query: 297 TGLCNLKCLELSDTQVGSSGLRH--------------------LSGLTNLESINLSFTGI 336
L L+ L++ ++ ++ + H + L L ++LSF I
Sbjct: 416 DNLPKLQNLDVHSNRITNTSVIHDLPSLETFYAQNNLITNIGTMDNLPELTYVDLSFNRI 475
Query: 337 SD----GSLRKLA------------------GLSSLKSLNLDARQITDTG----LAALTS 370
G L KL G+S L++L L + TG L+AL+
Sbjct: 476 PSLAPIGDLPKLEILKVTDNYSYLRSLGTMDGVSKLRNLELQNNYLNYTGTEGNLSALSD 535
Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
LT LT L+L D+G Y+ + L +L D+ IKD+S+L+ L Q
Sbjct: 536 LTNLTELNL-----RDNG--YISDISGLSTLSRLIYLNLDS--NKIKDISALSNLTTLQE 586
Query: 431 CNLTDKTLELISGLTGLVSLN---VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 487
L + +E IS L+ L +LN +S ++I + P N+ + VTA++
Sbjct: 587 LTLENNQIEDISALSDLDNLNKLALSKNKIID-----ISPAANMVN---RGASVTASN-- 636
Query: 488 RLQSRDLPNLVSFR 501
Q+ LP ++S++
Sbjct: 637 --QTYTLPTVLSYQ 648
Score = 39.3 bits (90), Expect = 5.3, Method: Composition-based stats.
Identities = 61/207 (29%), Positives = 94/207 (45%), Gaps = 30/207 (14%)
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
S + L L NL S+NLS ISD L + L +L SLNL + + T L+ + L L
Sbjct: 26 SNIEGLQYLENLTSLNLSENNISD--LAPIKDLVNLVSLNLSSNR-TLVNLSGVEGLVNL 82
Query: 375 THLDLFGARITD--SGAAYLRNFK-------NLRSLEI---CGGGLTDAGVKHIK--DLS 420
L++ + + S A L K N+++LE+ G L + +++ DL+
Sbjct: 83 QELNVSANKALEDISQVAALPVLKEISAQGCNIKTLELDNPAGAILPELETFYLQENDLT 142
Query: 421 SLT-------LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 473
LT L NL N + K+L + G T L ++ SN L + L L
Sbjct: 143 DLTSLAKLPKLKNLYIKGNASLKSLATLKGATKLQLIDASNCTDLET-LGDISGLSELEM 201
Query: 474 LTLESCKVTANDIKRLQS-RDLPNLVS 499
+ L C + +K + S +DLPNLV+
Sbjct: 202 IQLSGC----SKLKEITSLKDLPNLVN 224
>gi|290991093|ref|XP_002678170.1| predicted protein [Naegleria gruberi]
gi|284091781|gb|EFC45426.1| predicted protein [Naegleria gruberi]
Length = 156
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 88/153 (57%)
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
LK L++ ++ +G G + +S +T+LE+++LS + D L + L L++ ++T
Sbjct: 4 LKTLKIYNSFLGEDGAKVISTMTSLENLHLSGASVGDKGAVLLGSMHQLVKLSIPCNRVT 63
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421
G +++SL L L++ I D+GA ++ N KNL L G G+++ GV+ I + S
Sbjct: 64 SIGAESISSLQNLITLNISQNIIADTGAKFISNLKNLNELIADGIGISNDGVEFITSMES 123
Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
LT L+L +N + + T LIS + L SL++SN
Sbjct: 124 LTALSLQKNDDFEENTPLLISTMKQLTSLDLSN 156
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 58/105 (55%)
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
+T+LE+L+L +GD+G V L + L L + +V S G +S L NL ++N+S
Sbjct: 25 MTSLENLHLSGASVGDKGAVLLGSMHQLVKLSIPCNRVTSIGAESISSLQNLITLNISQN 84
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
I+D + ++ L +L L D I++ G+ +TS+ LT L L
Sbjct: 85 IIADTGAKFISNLKNLNELIADGIGISNDGVEFITSMESLTALSL 129
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 75/154 (48%), Gaps = 25/154 (16%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L++L I + + + + K +S +T+L++L +S + V D G L + +L L++
Sbjct: 1 MKRLKTLKI-YNSFLGEDGAKVISTMTSLENLHLSGASVGDKGAVLLGSMHQLVKLSIPC 59
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
VT+ +S+S+L +L LN+++ ++D G KF +
Sbjct: 60 NRVTSIGAESISSLQNLITLNISQNIIADTGA-KF-----------------------IS 95
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
L NL L D GI ++G+ +T + +L L L
Sbjct: 96 NLKNLNELIADGIGISNDGVEFITSMESLTALSL 129
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN- 432
L L ++ + + + GA + +L +L + G + D G + + L + LS CN
Sbjct: 4 LKTLKIYNSFLGEDGAKVISTMTSLENLHLSGASVGDKGAVLLGSMHQL--VKLSIPCNR 61
Query: 433 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 492
+T E IS L L++LN+S + I G + + LKNL L + ++ + ++ + S
Sbjct: 62 VTSIGAESISSLQNLITLNISQNIIADTGAKFISNLKNLNELIADGIGISNDGVEFITSM 121
Query: 493 D 493
+
Sbjct: 122 E 122
>gi|46906570|ref|YP_012959.1| cell wall surface anchor family protein [Listeria monocytogenes
serotype 4b str. F2365]
gi|47091468|ref|ZP_00229265.1| cell wall surface anchor family protein [Listeria monocytogenes
str. 4b H7858]
gi|81830300|sp|Q723X5.1|INLI_LISMF RecName: Full=Internalin-I; Flags: Precursor
gi|46879835|gb|AAT03136.1| cell wall surface anchor family protein [Listeria monocytogenes
serotype 4b str. F2365]
gi|47020145|gb|EAL10881.1| cell wall surface anchor family protein [Listeria monocytogenes
str. 4b H7858]
Length = 1775
Score = 75.5 bits (184), Expect = 7e-11, Method: Composition-based stats.
Identities = 117/422 (27%), Positives = 189/422 (44%), Gaps = 73/422 (17%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+E L+ L NLTSL+ NN + L+NLV L+L + LVNL G
Sbjct: 172 IEGLQYLENLTSLNLSENN---ISDLAPIKDLVNLVSLNLSS----NRTLVNLSG----- 219
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+ GL NL+ L +S +K + I+ + L L ++ +GC +
Sbjct: 220 -----------------VEGLVNLQELNVSANKALED-ISQVAALPVLKEISAQGCNIKT 261
Query: 219 ACLDSLSA--LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
LD+ + L L L L+D +K+ LK L + N + + L LKG T
Sbjct: 262 LELDNPAGAILPELETFYLQENDLTD--LTSLAKLPKLKNLYIKGNA-SLKSLATLKGAT 318
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES-INLSFTG 335
L+ ++ +C E L +++GL L+ ++LS G S L+ ++ L +L + +N++
Sbjct: 319 KLQLIDASNC-TDLETLGDISGLSELEMIQLS----GCSKLKEITSLKDLPNLVNITADS 373
Query: 336 ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
+ L L L L++L L D + +T+ + A+T + L L L G IT G L N
Sbjct: 374 CAIEDLGTLNNLPKLQTLILSDNKDLTN--INAITDMPQLKTLALDGCGITSIGT--LDN 429
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN----------------CNLTDKTL 438
L L++ LT + I DL L+ L++S N N++ L
Sbjct: 430 LPKLEKLDLKENQLTS--ISEINDLPRLSYLDVSVNYLTTIGELKKLPLLEWLNVSSNRL 487
Query: 439 ELISGLTGLVSL---NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP 495
+S LT SL NVSN+ I + G + L +L+ ++ V+ DI + D+P
Sbjct: 488 SDVSTLTNFPSLNYINVSNNVIRTVG--KMTELPSLKEFYAQNNNVS--DISMIH--DMP 541
Query: 496 NL 497
NL
Sbjct: 542 NL 543
Score = 55.5 bits (132), Expect = 7e-05, Method: Composition-based stats.
Identities = 125/494 (25%), Positives = 209/494 (42%), Gaps = 91/494 (18%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L + LSG + LKD NL ++ + C I D G L L L +L N
Sbjct: 341 SELEMIQLSGCSKLKE-ITSLKDLPNLVNITADSC-AIEDLGT--LNNLPKLQTLILSDN 396
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T + A + L L L+ C G L L KLE L++K + S+ +
Sbjct: 397 KDLT--NINAITDMPQLKTLALDGCGITSIG--TLDNLPKLEKLDLKENQLTSISE---I 449
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ L L L +S + +T I LK L L LN+ ++ + +L+ SL Y+N++
Sbjct: 450 NDLPRLSYLDVSVNYLTT--IGELKKLPLLEWLNVSSNRLSD--VSTLTNFPSLNYINVS 505
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+ G K +++ SLK N ++D ++H + NL ++ + I + G
Sbjct: 506 NNVIRTVG--KMTELPSLKEFYAQNNNVSDISMIH--DMPNLRKVDASNNLITNIG--TF 559
Query: 297 TGLCNLKCLELSDTQVGSSGLRH--------------------LSGLTNLESINLSFTGI 336
L L+ L++ ++ ++ + H + L L ++LSF I
Sbjct: 560 DNLPKLQNLDVHSNRITNTSVIHDLPSLETFYAQNNLITNIGTMDNLPELTYVDLSFNRI 619
Query: 337 SD----GSLRKLA------------------GLSSLKSLNLDARQITDTG----LAALTS 370
G L KL G+S L++L L + TG L+AL+
Sbjct: 620 PSLAPIGDLPKLEILKVTDNYSYLRSLGTMDGVSKLRNLELQNNYLNYTGTEGNLSALSD 679
Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
LT LT L+L D+G Y+ + L +L D+ IKD+S+L+ L Q
Sbjct: 680 LTNLTELNL-----RDNG--YISDISGLSTLSRLIYLNLDS--NKIKDISALSNLTTLQE 730
Query: 431 CNLTDKTLELISGLTGLVSLN---VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 487
L + +E IS L+ L +LN +S ++I + P N+ + VTA++
Sbjct: 731 LTLENNQIEDISALSDLDNLNKLALSKNKIID-----ISPAANMVN---RGASVTASN-- 780
Query: 488 RLQSRDLPNLVSFR 501
Q+ LP ++S++
Sbjct: 781 --QTYTLPTVLSYQ 792
Score = 39.3 bits (90), Expect = 5.2, Method: Composition-based stats.
Identities = 61/207 (29%), Positives = 94/207 (45%), Gaps = 30/207 (14%)
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
S + L L NL S+NLS ISD L + L +L SLNL + + T L+ + L L
Sbjct: 170 SNIEGLQYLENLTSLNLSENNISD--LAPIKDLVNLVSLNLSSNR-TLVNLSGVEGLVNL 226
Query: 375 THLDLFGARITD--SGAAYLRNFK-------NLRSLEI---CGGGLTDAGVKHIK--DLS 420
L++ + + S A L K N+++LE+ G L + +++ DL+
Sbjct: 227 QELNVSANKALEDISQVAALPVLKEISAQGCNIKTLELDNPAGAILPELETFYLQENDLT 286
Query: 421 SLT-------LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 473
LT L NL N + K+L + G T L ++ SN L + L L
Sbjct: 287 DLTSLAKLPKLKNLYIKGNASLKSLATLKGATKLQLIDASNCTDLET-LGDISGLSELEM 345
Query: 474 LTLESCKVTANDIKRLQS-RDLPNLVS 499
+ L C + +K + S +DLPNLV+
Sbjct: 346 IQLSGC----SKLKEITSLKDLPNLVN 368
>gi|405751552|ref|YP_006675017.1| internalin I [Listeria monocytogenes SLCC2378]
gi|404220752|emb|CBY72115.1| internalin I (LPXTG motif) [Listeria monocytogenes SLCC2378]
Length = 1775
Score = 75.5 bits (184), Expect = 7e-11, Method: Composition-based stats.
Identities = 117/422 (27%), Positives = 189/422 (44%), Gaps = 73/422 (17%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+E L+ L NLTSL+ NN + L+NLV L+L + LVNL G
Sbjct: 172 IEGLQYLENLTSLNLSENN---ISDLAPIKDLVNLVSLNLSS----NRTLVNLSG----- 219
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+ GL NL+ L +S +K + I+ + L L ++ +GC +
Sbjct: 220 -----------------VEGLVNLQELNVSANKALED-ISQVAALPVLKEISAQGCNIKT 261
Query: 219 ACLDSLSA--LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
LD+ + L L L L+D +K+ LK L + N + + L LKG T
Sbjct: 262 LELDNPAGAILPELETFYLQENDLTD--LTSLAKLPKLKNLYIKGNA-SLKSLATLKGAT 318
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES-INLSFTG 335
L+ ++ +C E L +++GL L+ ++LS G S L+ ++ L +L + +N++
Sbjct: 319 KLQLIDASNC-TDLETLGDISGLSELEMIQLS----GCSKLKEITSLKDLPNLVNITADS 373
Query: 336 ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
+ L L L L++L L D + +T+ + A+T + L L L G IT G L N
Sbjct: 374 CAIEDLGTLNNLPKLQTLILSDNKDLTN--INAITDMPQLKTLALDGCGITSIGT--LDN 429
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN----------------CNLTDKTL 438
L L++ LT + I DL L+ L++S N N++ L
Sbjct: 430 LPKLEKLDLKENQLTS--ISEINDLPRLSYLDVSVNYLTTIGELKKLPLLEWLNVSSNRL 487
Query: 439 ELISGLTGLVSL---NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP 495
+S LT SL NVSN+ I + G + L +L+ ++ V+ DI + D+P
Sbjct: 488 SDVSTLTNFPSLNYINVSNNVIRTVG--KMTELPSLKEFYAQNNNVS--DISMIH--DMP 541
Query: 496 NL 497
NL
Sbjct: 542 NL 543
Score = 55.1 bits (131), Expect = 8e-05, Method: Composition-based stats.
Identities = 125/494 (25%), Positives = 209/494 (42%), Gaps = 91/494 (18%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L + LSG + LKD NL ++ + C I D G L L L +L N
Sbjct: 341 SELEMIQLSGCSKLKE-ITSLKDLPNLVNITADSC-AIEDLGT--LNNLPKLQTLILSDN 396
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T + A + L L L+ C G L L KLE L++K + S+ +
Sbjct: 397 KDLT--NINAITDMPQLKTLALDGCGITSIG--TLDNLPKLEKLDLKENQLTSISE---I 449
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ L L L +S + +T I LK L L LN+ ++ + +L+ SL Y+N++
Sbjct: 450 NDLPRLSYLDVSVNYLTT--IGELKKLPLLEWLNVSSNRLSD--VSTLTNFPSLNYINVS 505
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+ G K +++ SLK N ++D ++H + NL ++ + I + G
Sbjct: 506 NNVIRTVG--KMTELPSLKEFYAQNNNVSDISMIH--DMPNLRKVDASNNLITNIG--TF 559
Query: 297 TGLCNLKCLELSDTQVGSSGLRH--------------------LSGLTNLESINLSFTGI 336
L L+ L++ ++ ++ + H + L L ++LSF I
Sbjct: 560 DNLPKLQNLDVHSNRITNTSVIHDLPSLETFYAQNNLITNIGTMDNLPELTYVDLSFNRI 619
Query: 337 SD----GSLRKLA------------------GLSSLKSLNLDARQITDTG----LAALTS 370
G L KL G+S L++L L + TG L+AL+
Sbjct: 620 PSLAPIGDLPKLEILKVTDNYSYLRSLGTMDGVSKLRNLELQNNYLNYTGTEGNLSALSD 679
Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
LT LT L+L D+G Y+ + L +L D+ IKD+S+L+ L Q
Sbjct: 680 LTNLTELNL-----RDNG--YISDISGLSTLSRLIYLNLDS--NKIKDISALSNLTTLQE 730
Query: 431 CNLTDKTLELISGLTGLVSLN---VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 487
L + +E IS L+ L +LN +S ++I + P N+ + VTA++
Sbjct: 731 LTLENNQIEDISALSDLDNLNKLALSKNKIID-----ISPAANMVN---RGASVTASN-- 780
Query: 488 RLQSRDLPNLVSFR 501
Q+ LP ++S++
Sbjct: 781 --QTYTLPTVLSYQ 792
Score = 39.3 bits (90), Expect = 5.4, Method: Composition-based stats.
Identities = 61/207 (29%), Positives = 94/207 (45%), Gaps = 30/207 (14%)
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
S + L L NL S+NLS ISD L + L +L SLNL + + T L+ + L L
Sbjct: 170 SNIEGLQYLENLTSLNLSENNISD--LAPIKDLVNLVSLNLSSNR-TLVNLSGVEGLVNL 226
Query: 375 THLDLFGARITD--SGAAYLRNFK-------NLRSLEI---CGGGLTDAGVKHIK--DLS 420
L++ + + S A L K N+++LE+ G L + +++ DL+
Sbjct: 227 QELNVSANKALEDISQVAALPVLKEISAQGCNIKTLELDNPAGAILPELETFYLQENDLT 286
Query: 421 SLT-------LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 473
LT L NL N + K+L + G T L ++ SN L + L L
Sbjct: 287 DLTSLAKLPKLKNLYIKGNASLKSLATLKGATKLQLIDASNCTDLET-LGDISGLSELEM 345
Query: 474 LTLESCKVTANDIKRLQS-RDLPNLVS 499
+ L C + +K + S +DLPNLV+
Sbjct: 346 IQLSGC----SKLKEITSLKDLPNLVN 368
>gi|366165824|ref|ZP_09465579.1| internalin A [Acetivibrio cellulolyticus CD2]
Length = 614
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 128/467 (27%), Positives = 191/467 (40%), Gaps = 102/467 (21%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
+G I+ D NL+SL+ + G++ L L LT+ S + ++ + A + L
Sbjct: 104 TGDIYYGDVKNLESLEVDSAFDFE--GIQFLTSLKKLTAKSIEESYSL---DLSAISSLK 158
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC-------------------NCITDSD 172
L LDL L+ L+GL L LN+ N D
Sbjct: 159 QLEYLDLNYYVTTSSDLICLEGLDNLTELNLNAYKIRDLSHLSNLSNLQILKLNNGPDIK 218
Query: 173 MKPLSGL------------------------TNLKSLQISCSKVTD-SGIAYLKGLQKLT 207
MKPL GL +NL +L+I + D SGI+ +K L KLT
Sbjct: 219 MKPLCGLEKLHTLIVYSNLLTNLNNYSELSASNLSTLEILSGNLNDISGISNIKSLTKLT 278
Query: 208 LLNLEGCPVTAACLDSLSALGSLF---YLNL------------NRCQLSD--------DG 244
L ++ L +SA+G+L YLNL N LS+
Sbjct: 279 L-------ISNINLSDISAIGNLTNLSYLNLCNNNIVDTTPIGNLTNLSELYLYENNISD 331
Query: 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK- 303
F+ + +L L L N I D + L LT L L +D+ I V++ LCNLK
Sbjct: 332 VSSFASLTNLSTLYLHNNNIVD--VSSLSNLTKLSDLTIDNNKI-----VDIAPLCNLKL 384
Query: 304 -CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
C++ S + + +S +TN+ S+NL+ I D + L+ L+ L +LNL ITD
Sbjct: 385 GCIDFSFNNI--VDISPISKVTNIYSVNLNNNNIVD--ISPLSNLTMLYTLNLSNNLITD 440
Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
+ L +L ++HL+L ITD A L N + L + +TD V + +L
Sbjct: 441 --ITPLGNLNSVSHLNLINNPITDVSA--LGNMSRVFQLWLSKTKVTD--VSALSKCPNL 494
Query: 423 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 469
L LS L TL+ VS+ + N I H P+K
Sbjct: 495 KYLYLSDIPELDRTTLD---SFASDVSVYLDN-YIAPTPTPHYYPIK 537
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 161/337 (47%), Gaps = 47/337 (13%)
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
LE+C R G K+ I D+K NL+SL++ S GI
Sbjct: 92 LEKCIRYATG---------------KFTGDIYYGDVK------NLESLEVD-SAFDFEGI 129
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
+L L+KLT ++E + L ++S+L L YL+LN + + +L L
Sbjct: 130 QFLTSLKKLTAKSIEES--YSLDLSAISSLKQLEYLDLNYYVTTSSDLICLEGLDNLTEL 187
Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
NL +I D L HL L+NL+ L L++ G + + + LC L+ +L V S+ L
Sbjct: 188 NLNAYKIRD--LSHLSNLSNLQILKLNN---GPD--IKMKPLCGLE--KLHTLIVYSNLL 238
Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN--LDARQITDTGLAALTSLTGLT 375
+L+ + L + NLS I G+L ++G+S++KSL I + ++A+ +LT L+
Sbjct: 239 TNLNNYSELSASNLSTLEILSGNLNDISGISNIKSLTKLTLISNINLSDISAIGNLTNLS 298
Query: 376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
+L+L I D+ + N NL L + ++D V L++L+ L L N N+ D
Sbjct: 299 YLNLCNNNIVDTTP--IGNLTNLSELYLYENNISD--VSSFASLTNLSTLYLHNN-NIVD 353
Query: 436 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 472
+ +S LT L L + N++I + PL NL+
Sbjct: 354 --VSSLSNLTKLSDLTIDNNKIVD-----IAPLCNLK 383
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 94/350 (26%), Positives = 153/350 (43%), Gaps = 47/350 (13%)
Query: 150 NLKGLMKLESLNIKWCNCITDS---DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +G+ L SL I +S D+ +S L L+ L ++ T S + L+GL L
Sbjct: 125 DFEGIQFLTSLKKLTAKSIEESYSLDLSAISSLKQLEYLDLNYYVTTSSDLICLEGLDNL 184
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266
T LNL + L LS L +L L LN D + + L L +
Sbjct: 185 TELNLNAYKIRD--LSHLSNLSNLQILKLNNGP--DIKMKPLCGLEKLHTL-----IVYS 235
Query: 267 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL-ELS-DTQVGSSGLRHLSGLT 324
L +L + L + NL + I L +++G+ N+K L +L+ + + S + + LT
Sbjct: 236 NLLTNLNNYSELSASNLSTLEILSGNLNDISGISNIKSLTKLTLISNINLSDISAIGNLT 295
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
NL +NL I D + + L++L L L I+D +++ SLT L+ L L I
Sbjct: 296 NLSYLNLCNNNIVDTT--PIGNLTNLSELYLYENNISD--VSSFASLTNLSTLYLHNNNI 351
Query: 385 TDSGAAYLRNFKNLRSLEICGGGLTDAG-------------------VKHIKDLSSLTLL 425
D + L N L L I + D + I ++++ +
Sbjct: 352 VDVSS--LSNLTKLSDLTIDNNKIVDIAPLCNLKLGCIDFSFNNIVDISPISKVTNIYSV 409
Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
NL+ N N+ D + +S LT L +LN+SN+ IT + PL NL S++
Sbjct: 410 NLNNN-NIVD--ISPLSNLTMLYTLNLSNNLITD-----ITPLGNLNSVS 451
>gi|255521411|ref|ZP_05388648.1| cell wall surface anchor family protein [Listeria monocytogenes FSL
J1-175]
Length = 1775
Score = 75.5 bits (184), Expect = 7e-11, Method: Composition-based stats.
Identities = 117/422 (27%), Positives = 189/422 (44%), Gaps = 73/422 (17%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+E L+ L NLTSL+ NN + L+NLV L+L + LVNL G
Sbjct: 172 IEGLQYLENLTSLNLSENN---ISDLAPIKDLVNLVSLNLSS----NRTLVNLSG----- 219
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+ GL NL+ L +S +K + I+ + L L ++ +GC +
Sbjct: 220 -----------------VEGLVNLQELNVSANKALED-ISQVAALPVLKEISAQGCNIKT 261
Query: 219 ACLDSLSA--LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
LD+ + L L L L+D +K+ LK L + N + + L LKG T
Sbjct: 262 LELDNPAGAILPELETFYLQENDLTD--LTSLAKLPKLKNLYIKGNA-SLKSLATLKGAT 318
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES-INLSFTG 335
L+ ++ +C E L +++GL L+ ++LS G S L+ ++ L +L + +N++
Sbjct: 319 KLQLIDASNC-TDLETLGDISGLSELEMIQLS----GCSKLKEITSLKDLPNLVNITADS 373
Query: 336 ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
+ L L L L++L L D + +T+ + A+T + L L L G IT G L N
Sbjct: 374 CAIEDLGTLNNLPKLQTLILSDNKDLTN--INAITDMPQLKTLALDGCGITSIGT--LDN 429
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN----------------CNLTDKTL 438
L L++ LT + I DL L+ L++S N N++ L
Sbjct: 430 LPKLEKLDLKENQLTS--ISEINDLPRLSYLDVSVNYLTTIGELKKLPLLEWLNVSSNRL 487
Query: 439 ELISGLTGLVSL---NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP 495
+S LT SL NVSN+ I + G + L +L+ ++ V+ DI + D+P
Sbjct: 488 SDVSTLTNFPSLNYINVSNNVIRTVG--KMTELPSLKEFYAQNNNVS--DISMIH--DMP 541
Query: 496 NL 497
NL
Sbjct: 542 NL 543
Score = 52.8 bits (125), Expect = 4e-04, Method: Composition-based stats.
Identities = 124/494 (25%), Positives = 208/494 (42%), Gaps = 91/494 (18%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L + LSG + LKD NL ++ + C I D G L L L +L N
Sbjct: 341 SELEMIQLSGCSKLKE-ITSLKDLPNLVNITADSC-AIEDLGT--LNNLPKLQTLILSDN 396
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T + A + L L L+ C G L L KLE L++K + S+ +
Sbjct: 397 KDLT--NINAITDMPQLKTLALDGCGITSIG--TLDNLPKLEKLDLKENQLTSISE---I 449
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ L L L +S + +T I LK L L LN+ ++ + +L+ SL Y+N++
Sbjct: 450 NDLPRLSYLDVSVNYLTT--IGELKKLPLLEWLNVSSNRLSD--VSTLTNFPSLNYINVS 505
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+ G K +++ SLK N ++D ++H + NL ++ + I + G
Sbjct: 506 NNVIRTVG--KMTELPSLKEFYAQNNNVSDISMIH--DMPNLRKVDASNNLITNIG--TF 559
Query: 297 TGLCNLKCLELSDTQVGSSGLRH--------------------LSGLTNLESINLSFTGI 336
L L+ L++ ++ ++ + H + L L ++LSF I
Sbjct: 560 DNLPKLQNLDVHSNRITNTSVIHDLPSLETFYAQNNLITNIGTMDNLPELTYVDLSFNRI 619
Query: 337 SD----GSLRKLA------------------GLSSLKSLNLDARQITDTG----LAALTS 370
G L KL G+S L++L L + TG L+AL+
Sbjct: 620 PSLAPIGDLPKLEILKVTDNYSYLRSLGTMDGVSKLRNLELQNNYLNYTGTEGNLSALSD 679
Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
LT LT L+L D+G Y+ + L + D+ IKD+S+L+ L Q
Sbjct: 680 LTNLTELNL-----RDNG--YISDISGLSTQSRLIYLNLDS--NKIKDISALSNLTTLQE 730
Query: 431 CNLTDKTLELISGLTGLVSLN---VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 487
L + +E IS L+ L +LN +S ++I + P N+ + VTA++
Sbjct: 731 LTLENNQIEDISALSDLDNLNKLALSKNKIID-----ISPAANMVN---RGASVTASN-- 780
Query: 488 RLQSRDLPNLVSFR 501
Q+ LP ++S++
Sbjct: 781 --QTYTLPTVLSYQ 792
Score = 39.3 bits (90), Expect = 5.4, Method: Composition-based stats.
Identities = 61/207 (29%), Positives = 94/207 (45%), Gaps = 30/207 (14%)
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
S + L L NL S+NLS ISD L + L +L SLNL + + T L+ + L L
Sbjct: 170 SNIEGLQYLENLTSLNLSENNISD--LAPIKDLVNLVSLNLSSNR-TLVNLSGVEGLVNL 226
Query: 375 THLDLFGARITD--SGAAYLRNFK-------NLRSLEI---CGGGLTDAGVKHIK--DLS 420
L++ + + S A L K N+++LE+ G L + +++ DL+
Sbjct: 227 QELNVSANKALEDISQVAALPVLKEISAQGCNIKTLELDNPAGAILPELETFYLQENDLT 286
Query: 421 SLT-------LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 473
LT L NL N + K+L + G T L ++ SN L + L L
Sbjct: 287 DLTSLAKLPKLKNLYIKGNASLKSLATLKGATKLQLIDASNCTDLET-LGDISGLSELEM 345
Query: 474 LTLESCKVTANDIKRLQS-RDLPNLVS 499
+ L C + +K + S +DLPNLV+
Sbjct: 346 IQLSGC----SKLKEITSLKDLPNLVN 368
>gi|158429242|pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 112/374 (29%), Positives = 174/374 (46%), Gaps = 64/374 (17%)
Query: 92 IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
I S+ L + L NLT L NN I + A L NL L L + +
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGLTL-----FNNQIT 120
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
++ L L +LN + T SD+ LSGLT+L+ L S ++VTD LK L LT
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTD-----LKPLANLT-- 173
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
LE +++ + +S L K + + SL N N+I+D +
Sbjct: 174 TLERLDISSNKVSDISVLA------------------KLTNLESLIATN---NQISD--I 210
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
L LTNL+ L+L+ + D G L L NL L+L++ Q+ S L LSGLT L +
Sbjct: 211 TPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPLSGLTKLTEL 266
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+ I+D
Sbjct: 267 KLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD--I 320
Query: 390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 449
+ + + L+ L ++D V + +L+++ L+ N IS LT L +
Sbjct: 321 SPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ---------ISDLTPLAN 369
Query: 450 LNVSNSRITSAGLR 463
L +RIT GL
Sbjct: 370 L----TRITQLGLN 379
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 122/253 (48%), Gaps = 43/253 (16%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 57 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 109
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ + Q+TD
Sbjct: 110 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTD 165
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 166 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 223
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 224 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 274
Query: 463 RHLKPLKNLRSLT 475
++ PL L +LT
Sbjct: 275 -NISPLAGLTALT 286
>gi|219821324|gb|ACL37794.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 171/376 (45%), Gaps = 58/376 (15%)
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
+ LKD + L + N QI+D + L L+NLT L+ NN IT + L NL
Sbjct: 55 ITPLKDLTKLVDIVMNNN-QITD--ISPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNL 108
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+L+L T + L GL L+ L+ N +TD +KPL+ LT L+ L IS +KV+
Sbjct: 109 NRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLERLDISSNKVS 162
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSK 250
D + L KLT NLE T + ++ LG +L L+LN QL D G +
Sbjct: 163 DISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LAS 213
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310
+ +L L++ N+I++ L L GLT L L L I + + + GL L LEL +
Sbjct: 214 LTNLTSLDVANNQISN--LAPLSGLTKLTELELGYNQISN--ISPIAGLTALTSLELHEN 269
Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK----------------LAGLSSL 350
Q+ + +S L NL + L F ISD SL K LA L+++
Sbjct: 270 QL--EDISPISNLKNLTYLALYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNI 327
Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEIC 404
L+ QI+D L L +LT ++ L L T+ Y N KN+ I
Sbjct: 328 NWLSAAHNQISD--LTPLANLTRISELGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIA 385
Query: 405 GGGLTDAGVKHIKDLS 420
++D G D++
Sbjct: 386 PATISDGGSYAEPDIT 401
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 128/270 (47%), Gaps = 56/270 (20%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD----EGLVNLTG 298
DG E + +L +N GFN++TD + LK LT L + +++ I D L NLTG
Sbjct: 34 DGLEY---LNNLTQINFGFNQLTD--ITPLKDLTKLVDIVMNNNQITDISPLANLTNLTG 88
Query: 299 LC----------------NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
L NL LELS + S + LSGLTNL+ LSF G L+
Sbjct: 89 LTLFNNQITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVTDLK 143
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
LA L++L+ L++ + +++D ++ L LT L L +I+D L NL L
Sbjct: 144 PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELS 199
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 459
+ G L D G + L++LT L+++ N L +SGLT L L + ++I++
Sbjct: 200 LNGNQLKDIGT--LASLTNLTSLDVANNQ---ISNLAPLSGLTKLTELELGYNQISNISP 254
Query: 460 -AG-------------LRHLKPLKNLRSLT 475
AG L + P+ NL++LT
Sbjct: 255 IAGLTALTSLELHENQLEDISPISNLKNLT 284
>gi|345480032|ref|XP_003424075.1| PREDICTED: F-box/LRR-repeat protein 14-like [Nasonia vitripennis]
Length = 567
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 94/320 (29%), Positives = 156/320 (48%), Gaps = 56/320 (17%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
+ L SL+ + C +SD G+ N+A++ + F+ +L +L
Sbjct: 260 FRGIPKLHSLNLSGCFNMSDAGI----------------NSALS----QPFS---SLTQL 296
Query: 137 DLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQI-SCSKV 192
+L C I + + L LE+L++ C IT+S + ++ GL +L+ L + SC V
Sbjct: 297 NLSYCKHITDASLGKIAQCLKNLETLDLGGCTNITNSGLHVIAWGLKSLRRLDVKSCWHV 356
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKI 251
+D GI YL G+ NL +L +L L Q L+D+G S +
Sbjct: 357 SDQGIGYLAGINSDAGGNL-----------------ALEHLGLQDVQRLTDEGLRSIS-L 398
Query: 252 G---SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLE 306
G SL+ +NL F +ITD + H+ +T+L L+L +C I + + NL G + L+
Sbjct: 399 GLATSLQSINLSFCVQITDNGMKHIAKITSLRELDLRNCDISESAMANLAEGGSRISSLD 458
Query: 307 LSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAGLSS-LKSLNL-DARQITD 362
+S +VG L+H+S GL NL+S+ LS ISD + K+A L++L + ++TD
Sbjct: 459 VSFCDKVGDQALQHISQGLFNLKSLGLSACPISDEGIDKIAKTQQDLETLLIGQCSRLTD 518
Query: 363 TG-LAALTSLTGLTHLDLFG 381
L + S+ L +DL+G
Sbjct: 519 KSILTIVESMPRLRSIDLYG 538
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 91/315 (28%), Positives = 152/315 (48%), Gaps = 61/315 (19%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDC-SNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSF 113
SSL ++LS +TD+ L + C NL++LD C I++ GL + GL +L L
Sbjct: 291 SSLTQLNLSYCKHITDASLGKIAQCLKNLETLDLGGCTNITNSGLHVIAWGLKSLRRLDV 350
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+ ++ QG+ AG+ + + G + LE L ++ +TD +
Sbjct: 351 KSCWHVSDQGIGYLAGINS-----------------DAGGNLALEHLGLQDVQRLTDEGL 393
Query: 174 KPLS-GL-TNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ +S GL T+L+S+ +S C ++TD+G+ ++ + L L+L C ++ + + +L+ G
Sbjct: 394 RSISLGLATSLQSINLSFCVQITDNGMKHIAKITSLRELDLRNCDISESAMANLAEGG-- 451
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGI 288
S+I SL V F +++ D+ L H+ +GL NL+SL L +C I
Sbjct: 452 ------------------SRISSLDV---SFCDKVGDQALQHISQGLFNLKSLGLSACPI 490
Query: 289 GDEGL-------VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGS 340
DEG+ +L L +C L+D + L + + L SI+L T IS S
Sbjct: 491 SDEGIDKIAKTQQDLETLLIGQCSRLTDKSI----LTIVESMPRLRSIDLYGCTKISKFS 546
Query: 341 LRKLAGLSSLKSLNL 355
L K+ L L SLNL
Sbjct: 547 LEKILKL-PLISLNL 560
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 136/300 (45%), Gaps = 70/300 (23%)
Query: 200 LKGLQKLTLLNLEGC-PVTAACLDSL--SALGSLFYLNLNRCQ-LSDDGCEKFSK-IGSL 254
+G+ KL LNL GC ++ A ++S SL LNL+ C+ ++D K ++ + +L
Sbjct: 260 FRGIPKLHSLNLSGCFNMSDAGINSALSQPFSSLTQLNLSYCKHITDASLGKIAQCLKNL 319
Query: 255 KVLNLG-FNEITDECL-VHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN-------LKC 304
+ L+LG IT+ L V GL +L L++ SC + D+G+ L G+ + L+
Sbjct: 320 ETLDLGGCTNITNSGLHVIAWGLKSLRRLDVKSCWHVSDQGIGYLAGINSDAGGNLALEH 379
Query: 305 LELSDTQ-VGSSGLRHLS-GL-TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
L L D Q + GLR +S GL T+L+SINLSF QIT
Sbjct: 380 LGLQDVQRLTDEGLRSISLGLATSLQSINLSF-----------------------CVQIT 416
Query: 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYL---------------------------RN 394
D G+ + +T L LDL I++S A L +
Sbjct: 417 DNGMKHIAKITSLRELDLRNCDISESAMANLAEGGSRISSLDVSFCDKVGDQALQHISQG 476
Query: 395 FKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNV 452
NL+SL + ++D G+ I K L L + Q LTDK+ L ++ + L S+++
Sbjct: 477 LFNLKSLGLSACPISDEGIDKIAKTQQDLETLLIGQCSRLTDKSILTIVESMPRLRSIDL 536
>gi|281206083|gb|EFA80272.1| hypothetical protein PPL_07099 [Polysphondylium pallidum PN500]
Length = 1036
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 110/401 (27%), Positives = 178/401 (44%), Gaps = 59/401 (14%)
Query: 67 SDVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGM 124
S +TD + ++ K+C+NL+ L N C ++D + L + NL LS R +T +
Sbjct: 295 SHITDDSVKNIAKNCANLEELHLNNCYLLTDNSITFLVKRCKNLKVLSMSRCERVTDYTL 354
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
+ K L LES+ I +TD + L L N+KS
Sbjct: 355 FEIS-----------------------KNLKALESICINRMKYVTDKGLADLKNL-NIKS 390
Query: 185 LQISCSKVTDSGIAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSD 242
+ +TD I+ L ++L +LN+ A C++ + S L+ + Q L
Sbjct: 391 FYAYETLLTDQSISELALRWRQLEVLNV------AKCINVTNQALSTVALHCPQIQKLFV 444
Query: 243 DGCEKFS---------KIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDS-CGIGDE 291
+GC K S K ++VL + ITDE ++ L+ L +L +LN+ + C ++
Sbjct: 445 NGCPKISSEAIVLVAQKCPLIRVLRIDNCPNITDEAILALEFLKSLHTLNVSNLCKFNEQ 504
Query: 292 GLV-------NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
L+ NL L +C +SD V G +H L L F G D + L
Sbjct: 505 SLIKILPSLPNLEQLFLYQCPRISDATVAVIG-QHCPNLKVLRLDQSIFPG--DAGVSCL 561
Query: 345 AGLSSLKSLNL-DARQITDTGLAAL-TSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSL 401
SLK LNL + I D + +L T LTGL L L G + +TD+ + N + + L
Sbjct: 562 VNCKSLKGLNLSNLENIHDQTIISLSTELTGLQKLYLTGCKGLTDASLDAITNIRTIEIL 621
Query: 402 EICGG-GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
I ++ + ++ L +L++LN+S N TDK L+L+
Sbjct: 622 RINDSFQFSEDALCNLAKLQNLSVLNMSGCVNTTDKVLDLL 662
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 104/427 (24%), Positives = 187/427 (43%), Gaps = 53/427 (12%)
Query: 68 DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++ D +I L + + LQ L C ++D L+ + + + L + + +
Sbjct: 577 NIHDQTIISLSTELTGLQKLYLTGCKGLTDASLDAITNIRTIEILRINDSFQFSEDALCN 636
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A L NL L++ C +++L +L L + CITD + P+
Sbjct: 637 LAKLQNLSVLNMSGCVNTTDKVLDLLICYCQQLTQLYLSNLPCITDRILPPMLASLLKLR 696
Query: 185 LQI--SCSKVTDSGIAYLK--GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ- 239
L CS VTD+ + L+ GL+ L + N G + L S+ + +L L + C+
Sbjct: 697 LLRIDGCSNVTDNALIGLRFNGLRYLEVFNCSGTFIGDEGLYSIVSQSALRELYMWNCET 756
Query: 240 LSDDGCEKFS-KIGSLKVLNLGF-NEITDECLVH-LKGLTNLESLNLDSCGIGDEGLVNL 296
++D+G +K + +L+VL + +ITD+ + L+ L +LN+ +GD+ L +
Sbjct: 757 ITDNGLKKIDMYLQNLEVLRVDRCKKITDKGIRSILQKAVLLRTLNISHTNLGDDTLTTV 816
Query: 297 TGLCNL---------------------------------KCLELSDTQVGSSGLRHLSGL 323
G C L +C ++SDT V +R S
Sbjct: 817 AGYCKLLKKLICTNLSRISDSGVSAVALQCPLLKMIDVSRCFKISDTAVIELSVR--SKY 874
Query: 324 TNLESINLSFTGISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALTSL-TGLTHLDL- 379
SIN + I++ S+ KL+ G LK +NL + ++ + G+ AL++ +T L++
Sbjct: 875 LKKFSIN-GNSKITNTSIIKLSVGCPRLKVVNLQECSKVGEVGILALSTYCKYITTLNVS 933
Query: 380 FGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS-QNCNLTDKT 437
+TD S R L+SL L DAGV + S++ L L Q+ N+TD+
Sbjct: 934 HCPLVTDLSIVGIGRECLGLKSLNASHTLLGDAGVIEVAVRSNINLEFLDIQSTNVTDQA 993
Query: 438 LELISGL 444
L +++ +
Sbjct: 994 LSMVAQM 1000
>gi|422417931|ref|ZP_16494886.1| internalin-I [Listeria seeligeri FSL N1-067]
gi|313634795|gb|EFS01226.1| internalin-I [Listeria seeligeri FSL N1-067]
Length = 1687
Score = 75.1 bits (183), Expect = 7e-11, Method: Composition-based stats.
Identities = 122/460 (26%), Positives = 202/460 (43%), Gaps = 75/460 (16%)
Query: 61 SVDLSGSDVTDS-GLIHLK--DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+ D +G +V DS GL+ + + S +D + +E + L N+TS+ NN
Sbjct: 127 NADATGDEVADSAGLLSITQLNLSGETGID-----ETDIASIEGFQYLENVTSVDLSENN 181
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+ L +V L+L + L ++GL L+ LN+ C + +D+ P++
Sbjct: 182 LTD---ITPLTDLTKIVTLNLSSNQNLED-LNGVEGLTNLQDLNVSTCKSL--ADISPVA 235
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L LK + + Q L L N EG D+L L + FYL N
Sbjct: 236 ALPALKEISAQGCNI-----------QTLELENPEG--------DALPELET-FYLQEND 275
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
Q + + LK L + N + E L L G T+++ ++ +C E + +++
Sbjct: 276 LQ----DLTALATLPKLKNLYIKGNS-SLESLETLNGSTSIQLIDASNC-TDMETVGDIS 329
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESI-NLSFTGISDGSLRKLAGLSSLKSLNLD 356
G+ L+ ++LS G S L+ ++ L NL ++ N++ L L L L++L L
Sbjct: 330 GITTLEMIQLS----GCSKLKEITDLKNLPNLTNITANNCIIEDLGTLENLPKLQTLILS 385
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
+ T + A+ L L + L G IT+ G L N L L+I G +TD + I
Sbjct: 386 GNE-NLTDVDAINDLPQLKTVALDGCGITNIGT--LENLPKLEKLDIKGNKVTD--ISEI 440
Query: 417 KDLSSLTLLNLSQN----------------CNLTDKTLELISGLTGLVSL---NVSNSRI 457
DL L+ L+ S+N NL++ L+ +S + SL NVSN+ I
Sbjct: 441 TDLPRLSYLDASENQLTTIGTLAKLPLLDWLNLSENQLKDVSAINNFPSLNYINVSNNSI 500
Query: 458 TSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 497
T+ G + L +L+ + KVT DI + D+PNL
Sbjct: 501 TTFG--KMTELPSLKEFYGQFNKVT--DISMIH--DMPNL 534
Score = 63.5 bits (153), Expect = 3e-07, Method: Composition-based stats.
Identities = 113/451 (25%), Positives = 203/451 (45%), Gaps = 48/451 (10%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS-FRRN 116
++ SVDLS +++TD + L D + + +L+ + S+ LE L G+ LT+L +
Sbjct: 171 NVTSVDLSENNLTD--ITPLTDLTKIVTLNLS-----SNQNLEDLNGVEGLTNLQDLNVS 223
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG--LMKLESLNIKWCNCITDSDMK 174
+ + A L L ++ + C L N +G L +LE+ ++ + D+
Sbjct: 224 TCKSLADISPVAALPALKEISAQGCNIQTLELENPEGDALPELETFYLQENDL---QDLT 280
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L+ L LK+L I + +S + L G + L++ C D +S + +L +
Sbjct: 281 ALATLPKLKNLYIKGNSSLES-LETLNGSTSIQLIDASNCTDMETVGD-ISGITTLEMIQ 338
Query: 235 LNRCQLSDDGCEKFSKIGSLKVL----NLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
L+ GC K +I LK L N+ N E L L+ L L++L L G+
Sbjct: 339 LS-------GCSKLKEITDLKNLPNLTNITANNCIIEDLGTLENLPKLQTLILS----GN 387
Query: 291 EGLVNLTGLCNLKCLE-LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 349
E L ++ + +L L+ ++ G + + L L LE +++ ++D + ++ L
Sbjct: 388 ENLTDVDAINDLPQLKTVALDGCGITNIGTLENLPKLEKLDIKGNKVTD--ISEITDLPR 445
Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409
L L+ Q+T G L L L L+L ++ D A + NF +L + + +T
Sbjct: 446 LSYLDASENQLTTIG--TLAKLPLLDWLNLSENQLKDVSA--INNFPSLNYINVSNNSIT 501
Query: 410 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 469
G + +L SL Q +TD + +I + L LNVSN+ I + G + L
Sbjct: 502 TFG--KMTELPSLKEF-YGQFNKVTD--ISMIHDMPNLRKLNVSNNLINNLGT--FENLP 554
Query: 470 NLRSLTLESCKVTANDIKRLQSRDLPNLVSF 500
L++L + S K+T + D P+L ++
Sbjct: 555 KLQNLDIHSNKITNTTV----IHDFPSLETY 581
>gi|290979617|ref|XP_002672530.1| predicted protein [Naegleria gruberi]
gi|284086107|gb|EFC39786.1| predicted protein [Naegleria gruberi]
Length = 401
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 121/239 (50%), Gaps = 12/239 (5%)
Query: 245 CEKFSKIGSLKVLNLGFNEITD---ECLVHLKGLTNLE-SLNLDSCGIGDEGLVNLTGLC 300
C+ F+ + + LN+ N + + + LK LTNL+ S+NL IGDEG+ L L
Sbjct: 101 CQLFNLMKDISTLNVSENTFENGHCKYIGQLKHLTNLDISINL----IGDEGVGYLRKLK 156
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
L L +S+ +G G +++ + L +N++ I ++ L L L++L++ I
Sbjct: 157 QLTNLNISNNMIGEKGAQYIGKMKQLTCLNINSNHIGSEGVKFLKELKELRTLDMVYCYI 216
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
+ G L+ + LTHLD+ I + GA YL K L L L D V+++ L
Sbjct: 217 GEVGAKYLSEMKQLTHLDVECNNI-NGGAKYLGELKELTYLNAKYNILGD-DVRYLSRLE 274
Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 479
LT LN++ N ++ K + IS + LV+LN+ ++ I G + + +K L L + SC
Sbjct: 275 LLTDLNVANN-GISAKGAKFISEMNRLVNLNIGHNNIGKEGAKFISQMKKLTCLDI-SC 331
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 140/305 (45%), Gaps = 10/305 (3%)
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L N+ L + R RI L LMK + +LN+ N + K + L +L +L IS
Sbjct: 82 LQNIQSLTVNRRNRIIAFDCQLFNLMKDISTLNVSE-NTFENGHCKYIGQLKHLTNLDIS 140
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+ + D G+ YL+ L++LT LN+ + + + L LN+N + +G +
Sbjct: 141 INLIGDEGVGYLRKLKQLTNLNISNNMIGEKGAQYIGKMKQLTCLNINSNHIGSEGVKFL 200
Query: 249 SKIGSLKVLNLGF---NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
++ L+ L++ + E+ + L +K LT+L+ C + G L L L L
Sbjct: 201 KELKELRTLDMVYCYIGEVGAKYLSEMKQLTHLDV----ECNNINGGAKYLGELKELTYL 256
Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365
+G +R+LS L L +N++ GIS + ++ ++ L +LN+ I G
Sbjct: 257 NAKYNILGDD-VRYLSRLELLTDLNVANNGISAKGAKFISEMNRLVNLNIGHNNIGKEGA 315
Query: 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425
++ + LT LD+ I D GA + K L SL I + G +I +++ LT L
Sbjct: 316 KFISQMKKLTCLDISCNSIQDEGAKCISEMKQLTSLNINSNNINKKGANYIAEMNQLTYL 375
Query: 426 NLSQN 430
+ N
Sbjct: 376 KIRFN 380
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 119/257 (46%), Gaps = 4/257 (1%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I D G+ +LR L LT+L+ NN I +G + + L L++ G+ LK
Sbjct: 144 IGDEGVGYLRKLKQLTNLNIS-NNMIGEKGAQYIGKMKQLTCLNINSNHIGSEGVKFLKE 202
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L +L +L++ +C I + K LS + L L + C+ + + G YL L++LT LN +
Sbjct: 203 LKELRTLDMVYC-YIGEVGAKYLSEMKQLTHLDVECNNI-NGGAKYLGELKELTYLNAK- 259
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+ + LS L L LN+ +S G + S++ L LN+G N I E +
Sbjct: 260 YNILGDDVRYLSRLELLTDLNVANNGISAKGAKFISEMNRLVNLNIGHNNIGKEGAKFIS 319
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
+ L L++ I DEG ++ + L L ++ + G +++ + L + + F
Sbjct: 320 QMKKLTCLDISCNSIQDEGAKCISEMKQLTSLNINSNNINKKGANYIAEMNQLTYLKIRF 379
Query: 334 TGISDGSLRKLAGLSSL 350
+G+ L L +L
Sbjct: 380 NIGDNGARNILKQLPNL 396
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 88/218 (40%), Gaps = 56/218 (25%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++++ + + G+ LK+ L++LD +C I + G ++L + LT
Sbjct: 185 LNINSNHIGSEGVKFLKELKELRTLDMVYCY-IGEVGAKYLSEMKQLTH----------- 232
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
LD+E C I+GG L L +L LN K+ N + D
Sbjct: 233 --------------LDVE-CNNINGGAKYLGELKELTYLNAKY-NILGDD---------- 266
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
+ YL L+ LT LN+ ++A +S + L LN+ +
Sbjct: 267 ---------------VRYLSRLELLTDLNVANNGISAKGAKFISEMNRLVNLNIGHNNIG 311
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDE---CLVHLKGLT 276
+G + S++ L L++ N I DE C+ +K LT
Sbjct: 312 KEGAKFISQMKKLTCLDISCNSIQDEGAKCISEMKQLT 349
>gi|428304289|ref|YP_007141114.1| hypothetical protein Cri9333_0667 [Crinalium epipsammum PCC 9333]
gi|428245824|gb|AFZ11604.1| leucine-rich repeat-containing protein [Crinalium epipsammum PCC
9333]
Length = 382
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 134/283 (47%), Gaps = 49/283 (17%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
LE ++ L NLT L F N + GL NL L L R + ++K L+ L
Sbjct: 126 LEGIQALRNLTELRFGENKI---SDLAPLRGLTNLTTLHLYR-----NQISDVKPLLSLR 177
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+L + SD+KPL+GLT L +L + +K+TD + L GL LT L L G ++
Sbjct: 178 NLTSLELSSNPISDLKPLAGLTKLTTLGLGGNKITD--LKPLAGLANLTTLELSGNKISD 235
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
L L+ L +L L L+ ++SD L + GLT L
Sbjct: 236 --LKPLAGLANLTKLYLSGNKISD--------------------------LKPVAGLTKL 267
Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
L LD+ I D + L GL NL L L + ++ ++ L+ LT+L + LS ISD
Sbjct: 268 TKLWLDNNQISD--VQPLAGLINLTFLSLDNNKIND--VQPLANLTSLMGLGLSLNKISD 323
Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
+ L GL+ L L+L+ +I+D +T L GLT+L++ G
Sbjct: 324 --VTPLRGLTKLNWLDLNLNKISD-----VTPLAGLTNLNVNG 359
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 120/239 (50%), Gaps = 23/239 (9%)
Query: 237 RCQL-SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
R QL + D + + +K LNL EIT L ++ L NL L I D L
Sbjct: 95 RQQLGTGDKPLTLNALQRVKHLNLINKEIT--SLEGIQALRNLTELRFGENKISD--LAP 150
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
L GL NL L L Q+ S ++ L L NL S+ LS ISD L+ LAGL+ L +L L
Sbjct: 151 LRGLTNLTTLHLYRNQI--SDVKPLLSLRNLTSLELSSNPISD--LKPLAGLTKLTTLGL 206
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
+ITD L L L LT L+L G +I+D L NL L + G ++D +K
Sbjct: 207 GGNKITD--LKPLAGLANLTTLELSGNKISD--LKPLAGLANLTKLYLSGNKISD--LKP 260
Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
+ L+ LT L L N ++D ++ ++GL L L++ N++I ++PL NL SL
Sbjct: 261 VAGLTKLTKLWLDNN-QISD--VQPLAGLINLTFLSLDNNKI-----NDVQPLANLTSL 311
>gi|320164980|gb|EFW41879.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 769
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 115/277 (41%), Gaps = 26/277 (9%)
Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
TSLS +N IT+ AF L LV + L+ N I
Sbjct: 45 TSLSLY-DNQITSLPASAFTSLTALVAVYLQD-------------------------NQI 78
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
T +G+T LK L ++ +++T GL L L L G +T L++ L
Sbjct: 79 TAVPASAFAGMTTLKQLHLANNQLTSISTGTFAGLTSLVSLYLAGNQITTIPLNAFVDLT 138
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
L L LN Q++D F+ + +K L L N+IT GLT L L L S I
Sbjct: 139 QLVGLELNNNQITDIPASSFTGLSGMKRLTLNNNQITILSANAFTGLTALTELYLSSNTI 198
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
TGL L +EL Q+ S +GL++L + LS I+ S GL+
Sbjct: 199 TSISANAFTGLSALTMVELQFNQITSIASNSFTGLSSLIFLGLSSNRITSISDNAFTGLT 258
Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
L SL L + QIT +ALT + L L L G T
Sbjct: 259 QLVSLTLFSNQITSISASALTGMPVLLQLTLTGNPFT 295
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 103/227 (45%), Gaps = 1/227 (0%)
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
L+L N+IT LT L ++ L I G+ LK L L++ Q+ S
Sbjct: 47 LSLYDNQITSLPASAFTSLTALVAVYLQDNQITAVPASAFAGMTTLKQLHLANNQLTSIS 106
Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
+GLT+L S+ L+ I+ L L+ L L L+ QITD ++ T L+G+
Sbjct: 107 TGTFAGLTSLVSLYLAGNQITTIPLNAFVDLTQLVGLELNNNQITDIPASSFTGLSGMKR 166
Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436
L L +IT A L L + +T LS+LT++ L N +T
Sbjct: 167 LTLNNNQITILSANAFTGLTALTELYLSSNTITSISANAFTGLSALTMVELQFN-QITSI 225
Query: 437 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 483
+GL+ L+ L +S++RITS L L SLTL S ++T+
Sbjct: 226 ASNSFTGLSSLIFLGLSSNRITSISDNAFTGLTQLVSLTLFSNQITS 272
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 104/244 (42%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N IT + LT L ++ + +++T + G+ L L+L +T+ + +
Sbjct: 52 NQITSLPASAFTSLTALVAVYLQDNQITAVPASAFAGMTTLKQLHLANNQLTSISTGTFA 111
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
L SL L L Q++ F + L L L N+ITD GL+ ++ L L++
Sbjct: 112 GLTSLVSLYLAGNQITTIPLNAFVDLTQLVGLELNNNQITDIPASSFTGLSGMKRLTLNN 171
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
I TGL L L LS + S +GL+ L + L F I+ +
Sbjct: 172 NQITILSANAFTGLTALTELYLSSNTITSISANAFTGLSALTMVELQFNQITSIASNSFT 231
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
GLSSL L L + +IT A T LT L L LF +IT A+ L L L + G
Sbjct: 232 GLSSLIFLGLSSNRITSISDNAFTGLTQLVSLTLFSNQITSISASALTGMPVLLQLTLTG 291
Query: 406 GGLT 409
T
Sbjct: 292 NPFT 295
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 115/275 (41%), Gaps = 28/275 (10%)
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
G L+L + + + A+ SL+AL +++ L Q++ F+ + +LK L+L
Sbjct: 43 GTTSLSLYDNQITSLPASAFTSLTALVAVY---LQDNQITAVPASAFAGMTTLKQLHLAN 99
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
N++T GLT+L SL L I L L L LEL++ Q
Sbjct: 100 NQLTSISTGTFAGLTSLVSLYLAGNQITTIPLNAFVDLTQLVGLELNNNQ---------- 149
Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
I+D GLS +K L L+ QIT A T LT LT L L
Sbjct: 150 --------------ITDIPASSFTGLSGMKRLTLNNNQITILSANAFTGLTALTELYLSS 195
Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
IT A L +E+ +T LSSL L LS N +T +
Sbjct: 196 NTITSISANAFTGLSALTMVELQFNQITSIASNSFTGLSSLIFLGLSSN-RITSISDNAF 254
Query: 442 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
+GLT LVSL + +++ITS L + L LTL
Sbjct: 255 TGLTQLVSLTLFSNQITSISASALTGMPVLLQLTL 289
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 109/235 (46%), Gaps = 14/235 (5%)
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
+ ++N ITA AFAG+ L +L L + T I G GL L SL + N IT
Sbjct: 72 YLQDNQITAVPASAFAGMTTLKQLHLANNQLTSISTG--TFAGLTSLVSLYLAG-NQITT 128
Query: 171 SDMKPLSGLTNLKSLQISCSKVTD---SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+ LT L L+++ +++TD S L G+++LTL N + ++A L+AL
Sbjct: 129 IPLNAFVDLTQLVGLELNNNQITDIPASSFTGLSGMKRLTLNNNQITILSANAFTGLTAL 188
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
L+ L+ ++ F+ + +L ++ L FN+IT GL++L L L S
Sbjct: 189 TELY---LSSNTITSISANAFTGLSALTMVELQFNQITSIASNSFTGLSSLIFLGLSSNR 245
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDG 339
I TGL L L L Q+ S L+G+ L + L+ FT + G
Sbjct: 246 ITSISDNAFTGLTQLVSLTLFSNQITSISASALTGMPVLLQLTLTGNPFTTLPPG 300
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 104/247 (42%)
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
SL + +++T + L L + L+ +TA + + + +L L+L QL+
Sbjct: 46 SLSLYDNQITSLPASAFTSLTALVAVYLQDNQITAVPASAFAGMTTLKQLHLANNQLTSI 105
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
F+ + SL L L N+IT L LT L L L++ I D + TGL +K
Sbjct: 106 STGTFAGLTSLVSLYLAGNQITTIPLNAFVDLTQLVGLELNNNQITDIPASSFTGLSGMK 165
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
L L++ Q+ +GLT L + LS I+ S GLS+L + L QIT
Sbjct: 166 RLTLNNNQITILSANAFTGLTALTELYLSSNTITSISANAFTGLSALTMVELQFNQITSI 225
Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
+ T L+ L L L RIT L SL + +T + + L
Sbjct: 226 ASNSFTGLSSLIFLGLSSNRITSISDNAFTGLTQLVSLTLFSNQITSISASALTGMPVLL 285
Query: 424 LLNLSQN 430
L L+ N
Sbjct: 286 QLTLTGN 292
>gi|71657215|ref|XP_817126.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70882298|gb|EAN95275.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 835
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 112/419 (26%), Positives = 184/419 (43%), Gaps = 68/419 (16%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S+L ++ L + +++ +++L +C +L+ + N C + LE L L LT LS N
Sbjct: 193 SNLRNLTLCNTPLSEVMMLYLSECVSLERVVVNSCRGLR--SLECLSSLQRLTELSLL-N 249
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
IT +G+ AF + RC + + L MKL+ +N L
Sbjct: 250 MGITEEGL-AF----------ISRCNSLRH--IQLDNCMKLQGINC-------------L 283
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
L L++L +S ++V+D GI L L+ L L L ++ ++ + L L L+L
Sbjct: 284 GSLIGLRTLSVSRNRVSDDGIRSLSNLRNLEQLRLVSFNRLSS-VEPVLCLDKLLELDLT 342
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
++D+GC + G ++ L L + + + LT+L L+L + L L
Sbjct: 343 ENWVTDEGCAALANCGQIQKLKLASCRCVSD-VRWICALTSLRFLDLSKTHVRSADLQLL 401
Query: 297 TGLCNLKCLELSDTQVGS-SGLRHLS---GLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
T C L + V S SG++ S GL +L ++L+ T I D R L ++L
Sbjct: 402 T-----MCQRLEELHVASCSGVKDASFVEGLLSLGHLDLTDTSIKDAGTRSLRKCTALTF 456
Query: 353 LNL-DARQITDTGL-------------------AALTSLTGLTHLDLFGAR----ITDSG 388
L+L D R +TD A + L T L++ R +TD
Sbjct: 457 LSLQDCRFLTDIQFVEPLRNLLNLNLEGTEVVDANIIPLMHCTKLEVLSLRHCLFLTD-- 514
Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
LR K L+SL++ G +TD GV + SL ++LS+ C +T E + LT L
Sbjct: 515 VRCLRELKALKSLDLSGTYVTDEGVSDVSQCISLERIDLSECCLITH--FEFLRPLTAL 571
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 123/461 (26%), Positives = 200/461 (43%), Gaps = 92/461 (19%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF----- 113
LL +DL+ + VTD G L +C +Q L C +SD +R + LTSL F
Sbjct: 336 LLELDLTENWVTDEGCAALANCGQIQKLKLASCRCVSD-----VRWICALTSLRFLDLSK 390
Query: 114 -----------------RRNNAITAQGMK--AFA-GLINLVKLDLERCTRIHGGLVNLKG 153
+ + G+K +F GL++L LDL + G +L+
Sbjct: 391 THVRSADLQLLTMCQRLEELHVASCSGVKDASFVEGLLSLGHLDLTDTSIKDAGTRSLRK 450
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L L+++ C +TD ++ + L NL +L + ++V D+ I L KL +L+L
Sbjct: 451 CTALTFLSLQDCRFLTD--IQFVEPLRNLLNLNLEGTEVVDANIIPLMHCTKLEVLSLRH 508
Query: 214 CP--VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV- 270
C CL L AL SL +L+ ++D+G S+ SL+ ++L ++ CL+
Sbjct: 509 CLFLTDVRCLRELKALKSL---DLSGTYVTDEGVSDVSQCISLERIDL-----SECCLIT 560
Query: 271 HLKGLTNLESLN---------LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
H + L L +L LD G+G G V + + K ++GS GL
Sbjct: 561 HFEFLRPLTALRHVIADRMNVLDVTGLGGSGSVEGVSIADCK-------RLGSMGLLEAP 613
Query: 322 GLTNLESINLSFTGISDGSLRK-LAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL 379
L +L +L + I+D + L SL+ LNL + IT+ L+A+ L LT L +
Sbjct: 614 RLLDL---SLKKSAITDSGIHSVLLRCHSLRRLNLQNCTSITE--LSAVAQLPSLTELLV 668
Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
+IT+ A++ L L++ I D++SL L+
Sbjct: 669 RNMKITNKSVAFVARCATLEKLQM-------VECVEITDVNSLKYLH------------- 708
Query: 440 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
LV L++S + +TS G+ L NL+ L L C+
Sbjct: 709 ------RLVELDLSRTSVTSGGIVGLARCYNLKKLNLSGCR 743
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 97/361 (26%), Positives = 167/361 (46%), Gaps = 42/361 (11%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS----CSKVTDSGIAYLKGLQKLTLLNL 211
+L +L ++ NC ++S++ L G+T++ S +I+ S SG+ L L L L L
Sbjct: 144 ELRALTVQ--NCFSESEV-ILRGVTSILSNRITEKREFSTFYISGVTNLGVLSNLRNLTL 200
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQ--LSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
P++ + LS SL + +N C+ S + ++ L +LN+G IT+E L
Sbjct: 201 CNTPLSEVMMLYLSECVSLERVVVNSCRGLRSLECLSSLQRLTELSLLNMG---ITEEGL 257
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
+ +L + LD+C + +G+ L L L+ L +S +V G+R LS L NLE +
Sbjct: 258 AFISRCNSLRHIQLDNC-MKLQGINCLGSLIGLRTLSVSRNRVSDDGIRSLSNLRNLEQL 316
Query: 330 NL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
L SF +S S+ + L L L+L +TD G AAL + + L L R S
Sbjct: 317 RLVSFNRLS--SVEPVLCLDKLLELDLTENWVTDEGCAALANCGQIQKLKLASCRCV-SD 373
Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
++ +LR L++ + A ++ + L L+++ + D + + GL L
Sbjct: 374 VRWICALTSLRFLDLSKTHVRSADLQLLTMCQRLEELHVASCSGVKDASF--VEGLLSLG 431
Query: 449 SLNVSNSRITSAGLRHLK-----------------------PLKNLRSLTLESCKVTAND 485
L+++++ I AG R L+ PL+NL +L LE +V +
Sbjct: 432 HLDLTDTSIKDAGTRSLRKCTALTFLSLQDCRFLTDIQFVEPLRNLLNLNLEGTEVVDAN 491
Query: 486 I 486
I
Sbjct: 492 I 492
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 31/225 (13%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L S+DLSG+ VTD G+ + C +L+ +D + C I+ E LR L+ L + R N
Sbjct: 523 ALKSLDLSGTYVTDEGVSDVSQCISLERIDLSECCLITH--FEFLRPLTALRHVIADRMN 580
Query: 118 AITAQGMKAFAGLINLVKLDLERC-----------------------TRIHGGLVNLKGL 154
+ G+ + + D +R + IH L+ L
Sbjct: 581 VLDVTGLGGSGSVEGVSIADCKRLGSMGLLEAPRLLDLSLKKSAITDSGIHSVLLRCHSL 640
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
+ LN++ NC + +++ ++ L +L L + K+T+ +A++ L L + C
Sbjct: 641 RR---LNLQ--NCTSITELSAVAQLPSLTELLVRNMKITNKSVAFVARCATLEKLQMVEC 695
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
V ++SL L L L+L+R ++ G ++ +LK LNL
Sbjct: 696 -VEITDVNSLKYLHRLVELDLSRTSVTSGGIVGLARCYNLKKLNL 739
>gi|407859465|gb|EKG07051.1| hypothetical protein TCSYLVIO_001824 [Trypanosoma cruzi]
Length = 929
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 121/481 (25%), Positives = 205/481 (42%), Gaps = 81/481 (16%)
Query: 58 SLLSVDLSGSDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DLS + VT+ G+ + + L L C +I L+ LR L+ L L+
Sbjct: 367 ALRDLDLSYTQVTEEGMYRDVSKLNKLSRLSLEGCRKIE--SLQWLRALNQLRVLNLG-Y 423
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG-------------------------GLVNL 151
+++T + A L KLDL+ C RI GLV L
Sbjct: 424 SSVTDDSLTALRFCPELAKLDLQWCGRITSLKYLVGALCDSLRELNLTETSVTDEGLVPL 483
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
K LE ++++ C + SD+ L LT L+ + + ++VT+ G+ L Q L ++ +
Sbjct: 484 KDFAALELISLEGCGAV--SDLNVLCNLTRLREMDVGRTRVTNRGVVSLSQCQALRVMRM 541
Query: 212 EGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECL 269
C +T A + L AL L ++L+ C ++++G SL+ L L + ++D +
Sbjct: 542 RQCYRLTDA--NFLGALQQLEEVDLSDCPVTNEGIAGLFGARSLRKLRLQSCHAVSD--V 597
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG---LTNL 326
L GL +L L+L + +EG V L L L + V S L+ + L L
Sbjct: 598 NFLGGLEHLMLLDLHHTTVDEEGSVGLAQCPQLMTLIMHSVLVHS--LQQWNAALFLPRL 655
Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITD-----------TGLAALTSLTGL 374
+ ++LS T ++ +L L L++L+L + IT G+ A+
Sbjct: 656 KRLDLSTTKVTSDALSFLRMCPVLETLSLRGCKNITHLDFLILQPSSGAGVCAIVPRDVE 715
Query: 375 THLDLFGARI------TDSGAAYLRNF------------------KNLRSLEICGGGLTD 410
H D G I +D G + + LR L + G+TD
Sbjct: 716 PH-DTVGDIIAGKEKNSDDGPSPIETMTINDGVIKSAAAAAVVSRHRLRELTLSDTGVTD 774
Query: 411 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 470
G++ ++ L L L+ N TD + ++ L+ L L++S + +T +GL L P N
Sbjct: 775 EGLRALQYCPGLERLRLAHCKNFTD--VAVLRWLSQLKELDLSATGVTGSGLAKLSPSGN 832
Query: 471 L 471
L
Sbjct: 833 L 833
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 92/350 (26%), Positives = 159/350 (45%), Gaps = 13/350 (3%)
Query: 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
LS+ +S S L H C+ L+ LD ++ +G + L+ L+ LS I
Sbjct: 346 LSLCMSSSVSCTRFLRHRSLCA-LRDLDLSYTQVTEEGMYRDVSKLNKLSRLSLEGCRKI 404
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
+ ++ L L L+L + L L+ +L L+++WC IT +K L G
Sbjct: 405 --ESLQWLRALNQLRVLNLGYSSVTDDSLTALRFCPELAKLDLQWCGRITS--LKYLVGA 460
Query: 180 --TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
+L+ L ++ + VTD G+ LK L L++LEGC + L+ L L L +++ R
Sbjct: 461 LCDSLRELNLTETSVTDEGLVPLKDFAALELISLEGCGAVSD-LNVLCNLTRLREMDVGR 519
Query: 238 CQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
++++ G S+ +L+V+ + +TD L L LE ++L C + +EG+ L
Sbjct: 520 TRVTNRGVVSLSQCQALRVMRMRQCYRLTDANF--LGALQQLEEVDLSDCPVTNEGIAGL 577
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
G +L+ L L S + L GL +L ++L T + + LA L +L +
Sbjct: 578 FGARSLRKLRLQSCH-AVSDVNFLGGLEHLMLLDLHHTTVDEEGSVGLAQCPQLMTLIMH 636
Query: 357 ARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
+ + A L L LDL ++T ++LR L +L + G
Sbjct: 637 SVLVHSLQQWNAALFLPRLKRLDLSTTKVTSDALSFLRMCPVLETLSLRG 686
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 82/307 (26%), Positives = 143/307 (46%), Gaps = 35/307 (11%)
Query: 179 LTNLKSLQISCSKVTDSGIAY-LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L L+ L +S ++VT+ G+ + L KL+ L+LEGC + SL +L
Sbjct: 365 LCALRDLDLSYTQVTEEGMYRDVSKLNKLSRLSLEGC----------RKIESLQWLR--- 411
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+ L+VLNLG++ +TD+ L L+ L L+L CG +
Sbjct: 412 ------------ALNQLRVLNLGYSSVTDDSLTALRFCPELAKLDLQWCGRITSLKYLVG 459
Query: 298 GLCN-LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL 355
LC+ L+ L L++T V GL L LE I+L G +SD L L L+ L+ +++
Sbjct: 460 ALCDSLRELNLTETSVTDEGLVPLKDFAALELISLEGCGAVSD--LNVLCNLTRLREMDV 517
Query: 356 DARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
++T+ G+ +L+ L + + R+TD A +L + L +++ +T+ G+
Sbjct: 518 GRTRVTNRGVVSLSQCQALRVMRMRQCYRLTD--ANFLGALQQLEEVDLSDCPVTNEGIA 575
Query: 415 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
+ SL L L Q+C+ + + GL L+ L++ ++ + G L L +L
Sbjct: 576 GLFGARSLRKLRL-QSCHAVSD-VNFLGGLEHLMLLDLHHTTVDEEGSVGLAQCPQLMTL 633
Query: 475 TLESCKV 481
+ S V
Sbjct: 634 IMHSVLV 640
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 137/343 (39%), Gaps = 57/343 (16%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L +D+ + VT+ G++ L C L+ + C +++D L L L + +
Sbjct: 510 TRLREMDVGRTRVTNRGVVSLSQCQALRVMRMRQCYRLTDANF--LGALQQLEEVDLS-D 566
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIH-----GGLVNLK---------------GLMK 156
+T +G+ G +L KL L+ C + GGL +L GL +
Sbjct: 567 CPVTNEGIAGLFGARSLRKLRLQSCHAVSDVNFLGGLEHLMLLDLHHTTVDEEGSVGLAQ 626
Query: 157 LESLNIKWCNCITDSDMKPLSG---LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L + + ++ + L LK L +S +KVT +++L+ L L+L G
Sbjct: 627 CPQLMTLIMHSVLVHSLQQWNAALFLPRLKRLDLSTTKVTSDALSFLRMCPVLETLSLRG 686
Query: 214 CPVTAACLDSL-------SALGSLFYLNLNRCQLSDD---GCEKFSKIGSLKVLNLGFNE 263
C LD L + + ++ ++ D G EK S G + + N+
Sbjct: 687 C-KNITHLDFLILQPSSGAGVCAIVPRDVEPHDTVGDIIAGKEKNSDDGPSPIETMTIND 745
Query: 264 --ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL---TGLCNLK---CLELSDTQVGSS 315
I + L L L G+ DEGL L GL L+ C +D V
Sbjct: 746 GVIKSAAAAAVVSRHRLRELTLSDTGVTDEGLRALQYCPGLERLRLAHCKNFTDVAV--- 802
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
L L+ L+ ++LS TG++ L KL+ S NL AR
Sbjct: 803 ----LRWLSQLKELDLSATGVTGSGLAKLS-----PSGNLPAR 836
>gi|405754422|ref|YP_006677886.1| internalin I [Listeria monocytogenes SLCC2540]
gi|404223622|emb|CBY74984.1| internalin I (LPXTG motif) [Listeria monocytogenes SLCC2540]
Length = 1775
Score = 74.7 bits (182), Expect = 9e-11, Method: Composition-based stats.
Identities = 116/422 (27%), Positives = 189/422 (44%), Gaps = 73/422 (17%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+E L+ L NLTSL+ NN + L+NLV L+L + LVNL G
Sbjct: 172 IEGLQYLENLTSLNLSENN---ISDLAPIKDLVNLVSLNLSS----NRTLVNLSG----- 219
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+ GL NL+ L +S +K + I+ + L L ++ +GC +
Sbjct: 220 -----------------VEGLVNLQELNVSANKALED-ISQVAALPVLKEISAQGCNIKT 261
Query: 219 ACLDSLSA--LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
LD+ + L L L L+D +K+ LK L + N + + L LKG T
Sbjct: 262 LELDNPAGDILPELETFYLQENDLTD--LTSLAKLPKLKNLYIKGNA-SLKSLATLKGAT 318
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES-INLSFTG 335
L+ ++ +C E L +++GL L+ ++LS G S L+ ++ L +L + +N++
Sbjct: 319 KLQLIDASNC-TDLETLGDISGLSELEMIQLS----GCSKLKEITSLKDLPNLVNITADS 373
Query: 336 ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
+ L L L L++L L D + +T+ + A+T + L L L G IT G L N
Sbjct: 374 CAIEDLGTLNNLPKLQTLILSDNKDLTN--INAITDMPQLKTLALDGCGITSIGT--LDN 429
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN----------------CNLTDKTL 438
L L++ LT + I DL L+ L++S N N++ L
Sbjct: 430 LPKLEKLDLKENQLTS--ISEINDLPRLSYLDVSVNYLTTIGELKKLPLLEWLNVSSNRL 487
Query: 439 ELISGLTGLVSL---NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP 495
+S LT SL NVSN+ I + G + L +L+ ++ ++ DI + D+P
Sbjct: 488 SDVSTLTNFPSLNYINVSNNVIRTVG--KMTELPSLKEFYAQNNNIS--DISMIH--DMP 541
Query: 496 NL 497
NL
Sbjct: 542 NL 543
Score = 55.8 bits (133), Expect = 5e-05, Method: Composition-based stats.
Identities = 126/494 (25%), Positives = 209/494 (42%), Gaps = 91/494 (18%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L + LSG + LKD NL ++ + C I D G L L L +L N
Sbjct: 341 SELEMIQLSGCSKLKE-ITSLKDLPNLVNITADSC-AIEDLGT--LNNLPKLQTLILSDN 396
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T + A + L L L+ C G L L KLE L++K + S+ +
Sbjct: 397 KDLT--NINAITDMPQLKTLALDGCGITSIG--TLDNLPKLEKLDLKENQLTSISE---I 449
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ L L L +S + +T I LK L L LN+ ++ + +L+ SL Y+N++
Sbjct: 450 NDLPRLSYLDVSVNYLTT--IGELKKLPLLEWLNVSSNRLSD--VSTLTNFPSLNYINVS 505
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+ G K +++ SLK N I+D ++H + NL ++ + I + G
Sbjct: 506 NNVIRTVG--KMTELPSLKEFYAQNNNISDISMIH--DMPNLRKVDASNNLITNIG--TF 559
Query: 297 TGLCNLKCLELSDTQVGSSGLRH--------------------LSGLTNLESINLSFTGI 336
L L+ L++ ++ ++ + H + L L ++LSF I
Sbjct: 560 DNLPKLQNLDVHSNRITNTSVIHDLPSLETFYAQNNLITNIGTMDNLPELTYVDLSFNRI 619
Query: 337 SD----GSLRKLA------------------GLSSLKSLNLDARQITDTG----LAALTS 370
G L KL G+S L++L L + TG L+AL+
Sbjct: 620 PSLAPIGDLPKLEILKVTDNYSYLRSLGTMDGVSKLRNLELQNNYLNYTGTEGNLSALSD 679
Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
LT LT L+L D+G Y+ + L +L D+ IKD+S+L+ L Q
Sbjct: 680 LTNLTELNL-----RDNG--YISDISGLSTLSRLIYLNLDS--NKIKDISALSNLTTLQE 730
Query: 431 CNLTDKTLELISGLTGLVSLN---VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 487
L + +E IS L+ L +LN +S ++I + P N+ + VTA++
Sbjct: 731 LTLENNQIEDISALSDLDNLNKLALSKNKIID-----ISPAANMVN---RGASVTASN-- 780
Query: 488 RLQSRDLPNLVSFR 501
Q+ LP ++S++
Sbjct: 781 --QTYTLPTVLSYQ 792
Score = 38.5 bits (88), Expect = 7.7, Method: Composition-based stats.
Identities = 61/207 (29%), Positives = 94/207 (45%), Gaps = 30/207 (14%)
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
S + L L NL S+NLS ISD L + L +L SLNL + + T L+ + L L
Sbjct: 170 SNIEGLQYLENLTSLNLSENNISD--LAPIKDLVNLVSLNLSSNR-TLVNLSGVEGLVNL 226
Query: 375 THLDLFGARITD--SGAAYLRNFK-------NLRSLEI---CGGGLTDAGVKHIK--DLS 420
L++ + + S A L K N+++LE+ G L + +++ DL+
Sbjct: 227 QELNVSANKALEDISQVAALPVLKEISAQGCNIKTLELDNPAGDILPELETFYLQENDLT 286
Query: 421 SLT-------LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 473
LT L NL N + K+L + G T L ++ SN L + L L
Sbjct: 287 DLTSLAKLPKLKNLYIKGNASLKSLATLKGATKLQLIDASNCTDLET-LGDISGLSELEM 345
Query: 474 LTLESCKVTANDIKRLQS-RDLPNLVS 499
+ L C + +K + S +DLPNLV+
Sbjct: 346 IQLSGC----SKLKEITSLKDLPNLVN 368
>gi|226222958|ref|YP_002757065.1| internalin proteins, peptidoglycan bound protein (LPXTG motif)
[Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|386731097|ref|YP_006204593.1| internalin protein, peptidoglycan bound protein (LPXTG motif)
[Listeria monocytogenes 07PF0776]
gi|406703104|ref|YP_006753458.1| internalin I (LPXTG motif) [Listeria monocytogenes L312]
gi|225875420|emb|CAS04117.1| Putative internalin proteins, putative peptidoglycan bound protein
(LPXTG motif) [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|384389855|gb|AFH78925.1| internalin protein, peptidoglycan bound protein (LPXTG motif)
[Listeria monocytogenes 07PF0776]
gi|406360134|emb|CBY66407.1| internalin I (LPXTG motif) [Listeria monocytogenes L312]
Length = 1775
Score = 74.7 bits (182), Expect = 9e-11, Method: Composition-based stats.
Identities = 116/422 (27%), Positives = 189/422 (44%), Gaps = 73/422 (17%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+E L+ L NLTSL+ NN + L+NLV L+L + LVNL G
Sbjct: 172 IEGLQYLENLTSLNLSENN---ISDLAPIKDLVNLVSLNLSS----NRTLVNLSG----- 219
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+ GL NL+ L +S +K + I+ + L L ++ +GC +
Sbjct: 220 -----------------VEGLVNLQELNVSANKALED-ISQVAALPVLKEISAQGCNIKT 261
Query: 219 ACLDSLSA--LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
LD+ + L L L L+D +K+ LK L + N + + L LKG T
Sbjct: 262 LELDNPAGAILPELETFYLQENDLTD--LTSLAKLPKLKNLYIKGNA-SLKSLATLKGAT 318
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES-INLSFTG 335
L+ ++ +C E L +++GL L+ ++LS G S L+ ++ L +L + +N++
Sbjct: 319 KLQLIDASNC-TDLETLGDISGLSELEMIQLS----GCSKLKEITSLKDLPNLVNITADS 373
Query: 336 ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
+ L L L L++L L D + +T+ + A+T + L L L G IT G L N
Sbjct: 374 CAIEDLGTLNNLPKLQTLILSDNKDLTN--INAITDMPQLKTLALDGCGITSIGT--LDN 429
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN----------------CNLTDKTL 438
L L++ LT + I DL L+ L++S N N++ L
Sbjct: 430 LPKLEKLDLKENQLTS--ISEINDLPRLSYLDVSVNYLTTIGELKKLPLLEWLNVSSNRL 487
Query: 439 ELISGLTGLVSL---NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP 495
+S LT SL NVSN+ I + G + L +L+ ++ ++ DI + D+P
Sbjct: 488 SDVSTLTNFPSLNYINVSNNVIRTVG--KMTELPSLKEFYAQNNNIS--DISMIH--DMP 541
Query: 496 NL 497
NL
Sbjct: 542 NL 543
Score = 55.8 bits (133), Expect = 5e-05, Method: Composition-based stats.
Identities = 126/494 (25%), Positives = 209/494 (42%), Gaps = 91/494 (18%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L + LSG + LKD NL ++ + C I D G L L L +L N
Sbjct: 341 SELEMIQLSGCSKLKE-ITSLKDLPNLVNITADSC-AIEDLGT--LNNLPKLQTLILSDN 396
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T + A + L L L+ C G L L KLE L++K + S+ +
Sbjct: 397 KDLT--NINAITDMPQLKTLALDGCGITSIG--TLDNLPKLEKLDLKENQLTSISE---I 449
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ L L L +S + +T I LK L L LN+ ++ + +L+ SL Y+N++
Sbjct: 450 NDLPRLSYLDVSVNYLTT--IGELKKLPLLEWLNVSSNRLSD--VSTLTNFPSLNYINVS 505
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+ G K +++ SLK N I+D ++H + NL ++ + I + G
Sbjct: 506 NNVIRTVG--KMTELPSLKEFYAQNNNISDISMIH--DMPNLRKVDASNNLITNIG--TF 559
Query: 297 TGLCNLKCLELSDTQVGSSGLRH--------------------LSGLTNLESINLSFTGI 336
L L+ L++ ++ ++ + H + L L ++LSF I
Sbjct: 560 DNLPKLQNLDVHSNRITNTSVIHDLPSLETFYAQNNLITNIGTMDNLPELTYVDLSFNRI 619
Query: 337 SD----GSLRKLA------------------GLSSLKSLNLDARQITDTG----LAALTS 370
G L KL G+S L++L L + TG L+AL+
Sbjct: 620 PSLAPIGDLPKLEILKVTDNYSYLRSLGTMDGVSKLRNLELQNNYLNYTGTEGNLSALSD 679
Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
LT LT L+L D+G Y+ + L +L D+ IKD+S+L+ L Q
Sbjct: 680 LTNLTELNL-----RDNG--YISDISGLSTLSRLIYLNLDS--NKIKDISALSNLTTLQE 730
Query: 431 CNLTDKTLELISGLTGLVSLN---VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 487
L + +E IS L+ L +LN +S ++I + P N+ + VTA++
Sbjct: 731 LTLENNQIEDISALSDLDNLNKLALSKNKIID-----ISPAANMVN---RGASVTASN-- 780
Query: 488 RLQSRDLPNLVSFR 501
Q+ LP ++S++
Sbjct: 781 --QTYTLPTVLSYQ 792
Score = 39.3 bits (90), Expect = 5.2, Method: Composition-based stats.
Identities = 61/207 (29%), Positives = 94/207 (45%), Gaps = 30/207 (14%)
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
S + L L NL S+NLS ISD L + L +L SLNL + + T L+ + L L
Sbjct: 170 SNIEGLQYLENLTSLNLSENNISD--LAPIKDLVNLVSLNLSSNR-TLVNLSGVEGLVNL 226
Query: 375 THLDLFGARITD--SGAAYLRNFK-------NLRSLEI---CGGGLTDAGVKHIK--DLS 420
L++ + + S A L K N+++LE+ G L + +++ DL+
Sbjct: 227 QELNVSANKALEDISQVAALPVLKEISAQGCNIKTLELDNPAGAILPELETFYLQENDLT 286
Query: 421 SLT-------LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 473
LT L NL N + K+L + G T L ++ SN L + L L
Sbjct: 287 DLTSLAKLPKLKNLYIKGNASLKSLATLKGATKLQLIDASNCTDLET-LGDISGLSELEM 345
Query: 474 LTLESCKVTANDIKRLQS-RDLPNLVS 499
+ L C + +K + S +DLPNLV+
Sbjct: 346 IQLSGC----SKLKEITSLKDLPNLVN 368
>gi|254854582|ref|ZP_05243930.1| cell wall surface anchor family protein [Listeria monocytogenes FSL
R2-503]
gi|300766483|ref|ZP_07076434.1| cell wall surface anchor family protein [Listeria monocytogenes FSL
N1-017]
gi|404279887|ref|YP_006680785.1| internalin I [Listeria monocytogenes SLCC2755]
gi|404285703|ref|YP_006692289.1| internalin I [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|258607981|gb|EEW20589.1| cell wall surface anchor family protein [Listeria monocytogenes FSL
R2-503]
gi|300512809|gb|EFK39905.1| cell wall surface anchor family protein [Listeria monocytogenes FSL
N1-017]
gi|404226522|emb|CBY47927.1| internalin I (LPXTG motif) [Listeria monocytogenes SLCC2755]
gi|404244632|emb|CBY02857.1| internalin I (LPXTG motif) [Listeria monocytogenes serotype 7 str.
SLCC2482]
Length = 1775
Score = 74.7 bits (182), Expect = 9e-11, Method: Composition-based stats.
Identities = 116/422 (27%), Positives = 189/422 (44%), Gaps = 73/422 (17%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+E L+ L NLTSL+ NN + L+NLV L+L + LVNL G
Sbjct: 172 IEGLQYLENLTSLNLSENN---ISDLAPIKDLVNLVSLNLSS----NRTLVNLSG----- 219
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+ GL NL+ L +S +K + I+ + L L ++ +GC +
Sbjct: 220 -----------------VEGLVNLQELNVSANKALED-ISQVAALPVLKEISAQGCNIKT 261
Query: 219 ACLDSLSA--LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
LD+ + L L L L+D +K+ LK L + N + + L LKG T
Sbjct: 262 LELDNPAGAILPELETFYLQENDLTD--LTSLAKLPKLKNLYIKGNA-SLKSLATLKGAT 318
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES-INLSFTG 335
L+ ++ +C E L +++GL L+ ++LS G S L+ ++ L +L + +N++
Sbjct: 319 KLQLIDASNC-TDLETLGDISGLSELEMIQLS----GCSKLKEITSLKDLPNLVNITADS 373
Query: 336 ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
+ L L L L++L L D + +T+ + A+T + L L L G IT G L N
Sbjct: 374 CAIEDLGTLNNLPKLQTLILSDNKDLTN--INAITDMPQLKTLALDGCGITSIGT--LDN 429
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN----------------CNLTDKTL 438
L L++ LT + I DL L+ L++S N N++ L
Sbjct: 430 LPKLEKLDLKENQLTS--ISEINDLPRLSYLDVSVNYLTTIGELKKLPLLEWLNVSSNRL 487
Query: 439 ELISGLTGLVSL---NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP 495
+S LT SL NVSN+ I + G + L +L+ ++ ++ DI + D+P
Sbjct: 488 SDVSTLTNFPSLNYINVSNNVIRTVG--KMTELPSLKEFYAQNNNIS--DISMIH--DMP 541
Query: 496 NL 497
NL
Sbjct: 542 NL 543
Score = 55.8 bits (133), Expect = 5e-05, Method: Composition-based stats.
Identities = 126/494 (25%), Positives = 209/494 (42%), Gaps = 91/494 (18%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L + LSG + LKD NL ++ + C I D G L L L +L N
Sbjct: 341 SELEMIQLSGCSKLKE-ITSLKDLPNLVNITADSC-AIEDLGT--LNNLPKLQTLILSDN 396
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T + A + L L L+ C G L L KLE L++K + S+ +
Sbjct: 397 KDLT--NINAITDMPQLKTLALDGCGITSIG--TLDNLPKLEKLDLKENQLTSISE---I 449
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ L L L +S + +T I LK L L LN+ ++ + +L+ SL Y+N++
Sbjct: 450 NDLPRLSYLDVSVNYLTT--IGELKKLPLLEWLNVSSNRLSD--VSTLTNFPSLNYINVS 505
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+ G K +++ SLK N I+D ++H + NL ++ + I + G
Sbjct: 506 NNVIRTVG--KMTELPSLKEFYAQNNNISDISMIH--DMPNLRKVDASNNLITNIG--TF 559
Query: 297 TGLCNLKCLELSDTQVGSSGLRH--------------------LSGLTNLESINLSFTGI 336
L L+ L++ ++ ++ + H + L L ++LSF I
Sbjct: 560 DNLPKLQNLDVHSNRITNTSVIHDLPSLETFYAQNNLITNIGTMDNLPELTYVDLSFNRI 619
Query: 337 SD----GSLRKLA------------------GLSSLKSLNLDARQITDTG----LAALTS 370
G L KL G+S L++L L + TG L+AL+
Sbjct: 620 PSLAPIGDLPKLEILKVTDNYSYLRSLGTMDGVSKLRNLELQNNYLNYTGTEGNLSALSD 679
Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
LT LT L+L D+G Y+ + L +L D+ IKD+S+L+ L Q
Sbjct: 680 LTNLTELNL-----RDNG--YISDISGLSTLSRLIYLNLDS--NKIKDISALSNLTTLQE 730
Query: 431 CNLTDKTLELISGLTGLVSLN---VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 487
L + +E IS L+ L +LN +S ++I + P N+ + VTA++
Sbjct: 731 LTLENNQIEDISALSDLDNLNKLALSKNKIID-----ISPAANMVN---RGASVTASN-- 780
Query: 488 RLQSRDLPNLVSFR 501
Q+ LP ++S++
Sbjct: 781 --QTYTLPTVLSYQ 792
Score = 39.3 bits (90), Expect = 5.2, Method: Composition-based stats.
Identities = 61/207 (29%), Positives = 94/207 (45%), Gaps = 30/207 (14%)
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
S + L L NL S+NLS ISD L + L +L SLNL + + T L+ + L L
Sbjct: 170 SNIEGLQYLENLTSLNLSENNISD--LAPIKDLVNLVSLNLSSNR-TLVNLSGVEGLVNL 226
Query: 375 THLDLFGARITD--SGAAYLRNFK-------NLRSLEI---CGGGLTDAGVKHIK--DLS 420
L++ + + S A L K N+++LE+ G L + +++ DL+
Sbjct: 227 QELNVSANKALEDISQVAALPVLKEISAQGCNIKTLELDNPAGAILPELETFYLQENDLT 286
Query: 421 SLT-------LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 473
LT L NL N + K+L + G T L ++ SN L + L L
Sbjct: 287 DLTSLAKLPKLKNLYIKGNASLKSLATLKGATKLQLIDASNCTDLET-LGDISGLSELEM 345
Query: 474 LTLESCKVTANDIKRLQS-RDLPNLVS 499
+ L C + +K + S +DLPNLV+
Sbjct: 346 IQLSGC----SKLKEITSLKDLPNLVN 368
>gi|67473770|ref|XP_652634.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|56469505|gb|EAL47248.1| leucine rich repeat protein [Entamoeba histolytica HM-1:IMSS]
gi|449707794|gb|EMD47387.1| Fbox/leucine rich repeat-containing protein [Entamoeba histolytica
KU27]
Length = 657
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 96/363 (26%), Positives = 158/363 (43%), Gaps = 35/363 (9%)
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
+ + N++ L SL I ITDSD+ + LT LK L IS K I + +
Sbjct: 154 VSESIQNIRKYTSLTSLQIY---NITDSDIPSIGKLTGLKKLSISSKKFV-GKIEDMIDV 209
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL---------------SDDGCEKF 248
+LT L + P+ +L L ++ RC L DG
Sbjct: 210 SQLTSLEISNAPLGPEFYYNLYLFPYLVFIGFTRCHLPISGVSAQTPLSQLSPSDGFIYL 269
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNL-TGLC--NLKC 304
+ SL+ L L +E+T+ L L + NL ++L C + D L TG +L+
Sbjct: 270 AGCNSLRYLYLNESEVTNYHLDVLARMDNLLGISLKGCPTLSDYSLTPFKTGPIRKSLEE 329
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL----DARQI 360
L +SDT V GL+ ++ L L +++S DG ++ L+ L+SLK L + +
Sbjct: 330 LNISDTMVTHIGLQVIARLKYLRVLDISHC---DG-IKILSPLNSLKYLEVLRLSNVHIN 385
Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSG--AAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
+DT A L AR D F NL S+ + +T GV+ ++
Sbjct: 386 SDTLQDAFRIPPKYLQQLLVDARPIDDPLLTVICSKFPNLVSVNLKESQITSRGVEALQM 445
Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLE 477
+ L ++ S+ ++ D+ E +S +T L +++ + I+ G+ L+PL+ LR L
Sbjct: 446 VKYLRYVDFSKT-SVDDQVFEYLSKITSLETISFEDCQNISGEGVHVLEPLRGLRVLNFN 504
Query: 478 SCK 480
CK
Sbjct: 505 GCK 507
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 86/366 (23%), Positives = 162/366 (44%), Gaps = 44/366 (12%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS SD G I+L C++L+ L N ++++ L+ L + NL +S + ++
Sbjct: 260 LSPSD----GFIYLAGCNSLRYLYLNES-EVTNYHLDVLARMDNLLGISLKGCPTLSDYS 314
Query: 124 MKAF-AGLI--NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+ F G I +L +L++ H GL + L L L+I C+ I + PL+ L
Sbjct: 315 LTPFKTGPIRKSLEELNISDTMVTHIGLQVIARLKYLRVLDISHCDGI--KILSPLNSLK 372
Query: 181 NLKSLQISCSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNR 237
L+ L++S + + A+ + L L ++ P+ L + S +L +NL
Sbjct: 373 YLEVLRLSNVHINSDTLQDAFRIPPKYLQQLLVDARPIDDPLLTVICSKFPNLVSVNLKE 432
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL 296
Q++ G E + L+ ++ + D+ +L +T+LE+++ + C I EG+ L
Sbjct: 433 SQITSRGVEALQMVKYLRYVDFSKTSVDDQVFEYLSKITSLETISFEDCQNISGEGVHVL 492
Query: 297 TGLCNLKCL--------------ELSD-----------TQVGSSGLRHLSGLTNLESINL 331
L L+ L E+ D Q+G ++++ + L+ ++L
Sbjct: 493 EPLRGLRVLNFNGCKNFSEYSLKEMEDLSVETLRVSGANQIGMEAWKYIAQIEQLKRLDL 552
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
SFT + D ++++ L+ + L +ITD + L + +D AR T+ Y
Sbjct: 553 SFTSVEDNGIQEMLKSKWLEVIYLRHTKITDKSIETLLCCNLIRKID---ARETNVKKQY 609
Query: 392 LRNFKN 397
NF N
Sbjct: 610 --NFAN 613
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 149/327 (45%), Gaps = 20/327 (6%)
Query: 175 PLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
P+SG+ S Q S+++ S G YL G L L L VT LD L+ + +L +
Sbjct: 247 PISGV----SAQTPLSQLSPSDGFIYLAGCNSLRYLYLNESEVTNYHLDVLARMDNLLGI 302
Query: 234 NLNRCQ-LSDDGCEKFSKIG----SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
+L C LSD F K G SL+ LN+ +T L + L L L++ C
Sbjct: 303 SLKGCPTLSDYSLTPF-KTGPIRKSLEELNISDTMVTHIGLQVIARLKYLRVLDISHCD- 360
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN--LESINLSFTGISDGSLRKL-A 345
G + L L L L+ L LS+ + S L+ + L+ + + I D L + +
Sbjct: 361 GIKILSPLNSLKYLEVLRLSNVHINSDTLQDAFRIPPKYLQQLLVDARPIDDPLLTVICS 420
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR--SLEI 403
+L S+NL QIT G+ AL + L ++D + D YL +L S E
Sbjct: 421 KFPNLVSVNLKESQITSRGVEALQMVKYLRYVDFSKTSVDDQVFEYLSKITSLETISFED 480
Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS-RITSAGL 462
C ++ GV ++ L L +LN + N ++ +L+ + L+ + +L VS + +I
Sbjct: 481 C-QNISGEGVHVLEPLRGLRVLNFNGCKNFSEYSLKEMEDLS-VETLRVSGANQIGMEAW 538
Query: 463 RHLKPLKNLRSLTLESCKVTANDIKRL 489
+++ ++ L+ L L V N I+ +
Sbjct: 539 KYIAQIEQLKRLDLSFTSVEDNGIQEM 565
>gi|254992878|ref|ZP_05275068.1| internalin proteins, peptidoglycan bound protein (LPXTG motif)
[Listeria monocytogenes FSL J2-064]
Length = 1775
Score = 74.7 bits (182), Expect = 9e-11, Method: Composition-based stats.
Identities = 116/422 (27%), Positives = 189/422 (44%), Gaps = 73/422 (17%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+E L+ L NLTSL+ NN + L+NLV L+L + LVNL G
Sbjct: 172 IEGLQYLENLTSLNLSENN---ISDLAPIKDLVNLVSLNLSS----NRTLVNLSG----- 219
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+ GL NL+ L +S +K + I+ + L L ++ +GC +
Sbjct: 220 -----------------VEGLVNLQELNVSANKALED-ISQVAALPVLKEISAQGCNIKT 261
Query: 219 ACLDSLSA--LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
LD+ + L L L L+D +K+ LK L + N + + L LKG T
Sbjct: 262 LELDNPAGAILPELETFYLQENDLTD--LTSLAKLPKLKNLYIKGNA-SLKSLATLKGAT 318
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES-INLSFTG 335
L+ ++ +C E L +++GL L+ ++LS G S L+ ++ L +L + +N++
Sbjct: 319 KLQLIDASNC-TDLETLGDISGLSELEMIQLS----GCSKLKEITSLKDLPNLVNITADS 373
Query: 336 ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
+ L L L L++L L D + +T+ + A+T + L L L G IT G L N
Sbjct: 374 CAIEDLGTLNNLPKLQTLILSDNKDLTN--INAITDMPQLKTLALDGCGITSIGT--LDN 429
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN----------------CNLTDKTL 438
L L++ LT + I DL L+ L++S N N++ L
Sbjct: 430 LPKLEKLDLKENQLTS--ISEINDLPRLSYLDVSVNYLTTIGELKKLPLLEWLNVSSNRL 487
Query: 439 ELISGLTGLVSL---NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP 495
+S LT SL NVSN+ I + G + L +L+ ++ ++ DI + D+P
Sbjct: 488 SDVSTLTNFPSLNYINVSNNVIRTVG--KMTELPSLKEFYAQNNNIS--DISMIH--DMP 541
Query: 496 NL 497
NL
Sbjct: 542 NL 543
Score = 55.8 bits (133), Expect = 5e-05, Method: Composition-based stats.
Identities = 126/494 (25%), Positives = 209/494 (42%), Gaps = 91/494 (18%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L + LSG + LKD NL ++ + C I D G L L L +L N
Sbjct: 341 SELEMIQLSGCSKLKE-ITSLKDLPNLVNITADSC-AIEDLGT--LNNLPKLQTLILSDN 396
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T + A + L L L+ C G L L KLE L++K + S+ +
Sbjct: 397 KDLT--NINAITDMPQLKTLALDGCGITSIG--TLDNLPKLEKLDLKENQLTSISE---I 449
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ L L L +S + +T I LK L L LN+ ++ + +L+ SL Y+N++
Sbjct: 450 NDLPRLSYLDVSVNYLTT--IGELKKLPLLEWLNVSSNRLSD--VSTLTNFPSLNYINVS 505
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+ G K +++ SLK N I+D ++H + NL ++ + I + G
Sbjct: 506 NNVIRTVG--KMTELPSLKEFYAQNNNISDISMIH--DMPNLRKVDASNNLITNIG--TF 559
Query: 297 TGLCNLKCLELSDTQVGSSGLRH--------------------LSGLTNLESINLSFTGI 336
L L+ L++ ++ ++ + H + L L ++LSF I
Sbjct: 560 DNLPKLQNLDVHSNRITNTSVIHDLPSLETFYAQNNLITNIGTMDNLPELTYVDLSFNRI 619
Query: 337 SD----GSLRKLA------------------GLSSLKSLNLDARQITDTG----LAALTS 370
G L KL G+S L++L L + TG L+AL+
Sbjct: 620 PSLAPIGDLPKLEILKVTDNYSYLRSLGTMDGVSKLRNLELQNNYLNYTGTEGNLSALSD 679
Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
LT LT L+L D+G Y+ + L +L D+ IKD+S+L+ L Q
Sbjct: 680 LTNLTELNL-----RDNG--YISDISGLSTLSRLIYLNLDS--NKIKDISALSNLTTLQE 730
Query: 431 CNLTDKTLELISGLTGLVSLN---VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 487
L + +E IS L+ L +LN +S ++I + P N+ + VTA++
Sbjct: 731 LTLENNQIEDISALSDLDNLNKLALSKNKIID-----ISPAANMVN---RGASVTASN-- 780
Query: 488 RLQSRDLPNLVSFR 501
Q+ LP ++S++
Sbjct: 781 --QTYTLPTVLSYQ 792
Score = 39.3 bits (90), Expect = 5.4, Method: Composition-based stats.
Identities = 61/207 (29%), Positives = 94/207 (45%), Gaps = 30/207 (14%)
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
S + L L NL S+NLS ISD L + L +L SLNL + + T L+ + L L
Sbjct: 170 SNIEGLQYLENLTSLNLSENNISD--LAPIKDLVNLVSLNLSSNR-TLVNLSGVEGLVNL 226
Query: 375 THLDLFGARITD--SGAAYLRNFK-------NLRSLEI---CGGGLTDAGVKHIK--DLS 420
L++ + + S A L K N+++LE+ G L + +++ DL+
Sbjct: 227 QELNVSANKALEDISQVAALPVLKEISAQGCNIKTLELDNPAGAILPELETFYLQENDLT 286
Query: 421 SLT-------LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 473
LT L NL N + K+L + G T L ++ SN L + L L
Sbjct: 287 DLTSLAKLPKLKNLYIKGNASLKSLATLKGATKLQLIDASNCTDLET-LGDISGLSELEM 345
Query: 474 LTLESCKVTANDIKRLQS-RDLPNLVS 499
+ L C + +K + S +DLPNLV+
Sbjct: 346 IQLSGC----SKLKEITSLKDLPNLVN 368
>gi|425701584|gb|AFX92746.1| putative F-box/LRR-repeat protein [Megavirus courdo11]
Length = 559
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 112/462 (24%), Positives = 198/462 (42%), Gaps = 118/462 (25%)
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
N+ S++ R N IT + ++ G+ K++L C I G K L E++N+ C
Sbjct: 65 QNIKSINLSRTN-ITDKELQFLCGI---TKINLSCCKNITGS--GFKYLQLAENINLSGC 118
Query: 166 NCITDSDMKPLSGL-----------------------------------TNLKSLQISCS 190
N I S+++ LS + T +K + +S +
Sbjct: 119 NQIIGSELRYLSNIVKINLSRTNIDDQAIEYLIFGQKIDGNKEILIQPQTKIKFIDLSFT 178
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLF-------------YLN-- 234
K+T+ I+YL ++ ++N+ C VT++CL L + ++ YLN
Sbjct: 179 KITNCSISYLSNVK---IININSCEFVTSSCLQYLHNITHIYMNTYNVIIGDNIKYLNKI 235
Query: 235 ----LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL---ESLNLDSCG 287
LN LSD+ E I L++ N ++IT + L LK L L S N+D+
Sbjct: 236 KLLVLNDHTLSDNQLEYIQNIEHLEIYNTS-DKITHQGLQKLKNLKILSLRHSYNIDTIS 294
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAG 346
+ + L N C +++D+ L L +LE+INLS+ I+D L+ L
Sbjct: 295 FIPTNKIRILDLKN--CHQVTDSS--------LQYLPHLETINLSWCYKITDNGLKNLQH 344
Query: 347 LSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN-------- 397
++ ++NL +ITD GL L+ + + +ITD G +LRN KN
Sbjct: 345 VT---NINLSGCHRITDNGLVYLSKADSIN--ISYCIKITDDGLKHLRNVKNIKLGYHST 399
Query: 398 ------------------LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
++ ++ +TD G+ ++ + SL+LL N+TD L+
Sbjct: 400 SDIYMIEYFEYDFSKEKYIKEIKNTKQLITDIGLSYLINTQSLSLLYCE---NITDDGLQ 456
Query: 440 LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 480
+S + S++++N +I GL++L + + + CK
Sbjct: 457 YLSKIK---SISINNCPKIIGTGLKYLSDCQKINLSNVRLCK 495
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/329 (27%), Positives = 160/329 (48%), Gaps = 40/329 (12%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L+ ++D+ L ++++ +L+ +N +I+ GL+ L+ NL LS R + I
Sbjct: 240 LNDHTLSDNQLEYIQNIEHLEI--YNTSDKITHQGLQKLK---NLKILSLRHSYNIDTI- 293
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+F + LDL+ C ++ +L+ L LE++N+ WC ITD+ +K L +TN+
Sbjct: 294 --SFIPTNKIRILDLKNCHQVTDS--SLQYLPHLETINLSWCYKITDNGLKNLQHVTNIN 349
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGS--LFYLNLNRCQL 240
C ++TD+G+ Y L K +N+ C +T L L + + L Y + + +
Sbjct: 350 LS--GCHRITDNGLVY---LSKADSINISYCIKITDDGLKHLRNVKNIKLGYHSTSDIYM 404
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 299
+ FSK +K + ITD + L L N +SL+L C I D+GL L+
Sbjct: 405 IEYFEYDFSKEKYIKEIKNTKQLITD---IGLSYLINTQSLSLLYCENITDDGLQYLSK- 460
Query: 300 CNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN---- 354
+K + +++ ++ +GL++LS + + INLS + SL+ L+ S +K N
Sbjct: 461 --IKSISINNCPKIIGTGLKYLS---DCQKINLSNVRLCKSSLKYLSLFSKIKINNNFTD 515
Query: 355 ------LDARQITDTGLAALTSLTGLTHL 377
A++I +G +T GL HL
Sbjct: 516 DDLKYLSRAKKIKLSGFNKITK-NGLKHL 543
>gi|371944024|gb|AEX61852.1| putative F-box_LRR-repeat protein [Megavirus courdo7]
Length = 559
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 112/462 (24%), Positives = 198/462 (42%), Gaps = 118/462 (25%)
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
N+ S++ R N IT + ++ G+ K++L C I G K L E++N+ C
Sbjct: 65 QNIKSINLSRTN-ITDKELQFLRGI---TKINLSCCKNITGS--GFKYLQLAENINLSGC 118
Query: 166 NCITDSDMKPLSGL-----------------------------------TNLKSLQISCS 190
N I S+++ LS + T +K + +S +
Sbjct: 119 NQIIGSELRYLSNIVKINLSRTNIDDQAIEYLIFGQKIDGNKEILIQPQTKIKFIDLSFT 178
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLF-------------YLN-- 234
K+T+ I+YL ++ ++N+ C VT++CL L + ++ YLN
Sbjct: 179 KITNCSISYLSNVK---IININSCEFVTSSCLQYLHNITHIYMNTYNVIIGDNIKYLNKI 235
Query: 235 ----LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL---ESLNLDSCG 287
LN LSD+ E I L++ N ++IT + L LK L L S N+D+
Sbjct: 236 KLLVLNDHTLSDNQLEYIQNIEHLEIYNTS-DKITHQGLQKLKNLKILSLRHSYNIDTIS 294
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAG 346
+ + L N C +++D+ L L +LE+INLS+ I+D L+ L
Sbjct: 295 FIPTNKIRILDLKN--CHQVTDSS--------LQYLPHLETINLSWCYKITDNGLKNLQH 344
Query: 347 LSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN-------- 397
++ ++NL +ITD GL L+ + + +ITD G +LRN KN
Sbjct: 345 VT---NINLSGCHRITDNGLVYLSKADSIN--ISYCIKITDDGLKHLRNVKNIKLGYHST 399
Query: 398 ------------------LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
++ ++ +TD G+ ++ + SL+LL N+TD L+
Sbjct: 400 SDIYMIEYFEYDFSKEKYIKEIKNTKQLITDIGLSYLINTQSLSLLYCE---NITDDGLQ 456
Query: 440 LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 480
+S + S++++N +I GL++L + + + CK
Sbjct: 457 YLSKIK---SISINNCPKIIGTGLKYLSDCQKINLSNVRLCK 495
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/329 (27%), Positives = 160/329 (48%), Gaps = 40/329 (12%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L+ ++D+ L ++++ +L+ +N +I+ GL+ L+ NL LS R + I
Sbjct: 240 LNDHTLSDNQLEYIQNIEHLEI--YNTSDKITHQGLQKLK---NLKILSLRHSYNIDTI- 293
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+F + LDL+ C ++ +L+ L LE++N+ WC ITD+ +K L +TN+
Sbjct: 294 --SFIPTNKIRILDLKNCHQVTDS--SLQYLPHLETINLSWCYKITDNGLKNLQHVTNIN 349
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGS--LFYLNLNRCQL 240
C ++TD+G+ Y L K +N+ C +T L L + + L Y + + +
Sbjct: 350 LS--GCHRITDNGLVY---LSKADSINISYCIKITDDGLKHLRNVKNIKLGYHSTSDIYM 404
Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 299
+ FSK +K + ITD + L L N +SL+L C I D+GL L+
Sbjct: 405 IEYFEYDFSKEKYIKEIKNTKQLITD---IGLSYLINTQSLSLLYCENITDDGLQYLSK- 460
Query: 300 CNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN---- 354
+K + +++ ++ +GL++LS + + INLS + SL+ L+ S +K N
Sbjct: 461 --IKSISINNCPKIIGTGLKYLS---DCQKINLSNVRLCKSSLKYLSLFSKIKINNNFTD 515
Query: 355 ------LDARQITDTGLAALTSLTGLTHL 377
A++I +G +T GL HL
Sbjct: 516 DDLKYLSRAKKIKLSGFNKITK-NGLKHL 543
>gi|255523038|ref|ZP_05390010.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
gi|255513153|gb|EET89421.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
Length = 421
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 83/223 (37%), Positives = 120/223 (53%), Gaps = 22/223 (9%)
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
+L+ L L + +I D + LKGLTNL+ L L I D + L GL NL+ LEL Q+
Sbjct: 191 NLQSLTLTYCQIED--ISPLKGLTNLKELMLYDDNITD--ISPLKGLTNLEFLELYGNQI 246
Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
+ + L GLT L+ I+L I D +L L LS+L+ LNL +ITD +++L LT
Sbjct: 247 --TDIPSLEGLTKLKDIDLGNNKIHDITL--LRELSNLQELNLVYNKITD--ISSLKELT 300
Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
L LDL I+D + L NL+SL + +TD + +K L++L L L N N
Sbjct: 301 NLNSLDLDNNNISD--ISPLEKLSNLKSLSLGSNKITD--ISSLKGLTNLNSLVLDDN-N 355
Query: 433 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
+TD IS L GL +LN N + S + + PL+ L +L+
Sbjct: 356 ITD-----ISPLKGLTNLNFLN--LGSNKISDISPLEGLTNLS 391
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 124/251 (49%), Gaps = 23/251 (9%)
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGL------TNLESLNLDSCGIGDEGLVNLTGL 299
EK +I K N E +++ +V + ++ D + + N+T L
Sbjct: 108 EKNKQIKEGKTFNFKIKETSEKPIVFKDSVFERLIRNKIQVNKPDWETLNKSDVENITEL 167
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
C SD + + + GL NL+S+ L++ I D + L GL++LK L L
Sbjct: 168 MEQNCGIKSDNTIKY--INGIEGLVNLQSLTLTYCQIED--ISPLKGLTNLKELMLYDDN 223
Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419
ITD ++ L LT L L+L+G +ITD + L L+ +++ + D + +++L
Sbjct: 224 ITD--ISPLKGLTNLEFLELYGNQITDIPS--LEGLTKLKDIDLGNNKIHDITL--LREL 277
Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 479
S+L LNL N +TD + + LT L SL++ N+ I + + L+ L NL+SL+L S
Sbjct: 278 SNLQELNLVYN-KITD--ISSLKELTNLNSLDLDNNNI--SDISPLEKLSNLKSLSLGSN 332
Query: 480 KVTANDIKRLQ 490
K+T DI L+
Sbjct: 333 KIT--DISSLK 341
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 102/228 (44%), Gaps = 50/228 (21%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK---------------- 125
NLQSL +C QI D + L+GL+NL L +N +K
Sbjct: 191 NLQSLTLTYC-QIED--ISPLKGLTNLKELMLYDDNITDISPLKGLTNLEFLELYGNQIT 247
Query: 126 ---AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD------------ 170
+ GL L +DL +IH + L+ L L+ LN+ + N ITD
Sbjct: 248 DIPSLEGLTKLKDIDLGN-NKIHD-ITLLRELSNLQELNLVY-NKITDISSLKELTNLNS 304
Query: 171 --------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
SD+ PL L+NLKSL + +K+TD I+ LKGL L L L+ +T +
Sbjct: 305 LDLDNNNISDISPLEKLSNLKSLSLGSNKITD--ISSLKGLTNLNSLVLDDNNITD--IS 360
Query: 223 SLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNLGFNEITDECL 269
L L +L +LNL ++SD E + + +L + + NE+ E L
Sbjct: 361 PLKGLTNLNFLNLGSNKISDISPLEGLTNLSTLWLKDTPTNEVYKEKL 408
>gi|340057619|emb|CCC51965.1| conserved hypothetical protein [Trypanosoma vivax Y486]
Length = 872
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 114/441 (25%), Positives = 201/441 (45%), Gaps = 64/441 (14%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD GL+ ++ C++LQ L + C+++ + L L L +L+ RN + ++G K A
Sbjct: 289 ITDEGLLPVRKCTSLQHLTLDNCVRLR--SINCLGSLHRLHTLTVSRNR-MPSEGFKGLA 345
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L L L RI L ++ G+ L L++ N +TD L+ + L+ L+++
Sbjct: 346 NLRGLEVLRFAVLNRILT-LESIAGIQCLRELDLTD-NWLTDEGCAFLAHCSQLEHLKLA 403
Query: 189 -CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
C V+D + +++ L L L+L V LDSL + SL L+L C+
Sbjct: 404 YCRSVSD--VRWVRALTSLQTLDLSYTSVLNCFLDSLRSCSSLEELSLAYCK-------- 453
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
V+++ F + GL L+SL++ + + GL ++ L L L
Sbjct: 454 -------DVVDISF----------VVGLNCLKSLDVSGTCVDESGLSSVGKCPALTNLSL 496
Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLA 366
+ + +GL+ + L L ++N TG+ DG++ + L+ L+ + +TD +
Sbjct: 497 RECR-QVAGLKFVGALKQLINLNAEGTGMLDGNIDHITCCQKLEVLSFRNCPFLTD--VR 553
Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT-LL 425
L L GL LDL GA +TD G + L + +L S+++ G L + H L LT L
Sbjct: 554 CLKDLGGLKALDLAGAYVTDEGVSTLSHCTSLESIDVSGCCL----ITHFGFLIGLTKLR 609
Query: 426 NLSQNCN--------LTDKTLELIS-------------GLTGLVSLNVSNSRITSAGLRH 464
N+ N L ++E +S L L+V NS I++ G+
Sbjct: 610 NVVANGMNVVNVDGLLKSPSMERVSLVESRRLSFVGHVAAARLTELSVENSNISNVGINA 669
Query: 465 -LKPLKNLRSLTLESCKVTAN 484
L+ +L+ L+L+ C ++
Sbjct: 670 VLEGCYSLQRLSLQQCPAISD 690
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 90/330 (27%), Positives = 160/330 (48%), Gaps = 9/330 (2%)
Query: 156 KLESLNIKWCNCITDSDMKPLSG-LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
K+ESL+++ C T+ + ++ L+N + S SG L L L L L
Sbjct: 181 KVESLDLRQCYGETEMRLCSVTSILSNRLVRRHGLSTFYLSGTTALGVLTHLHSLELHSV 240
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
P++ + S SL +L ++ C+ L+ C + I L L+L + ITDE L+ ++
Sbjct: 241 PLSNELMLYFSQCLSLRHLIIDSCRGLASLEC--LTAIPGLLNLSLLNSPITDEGLLPVR 298
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
T+L+ L LD+C + + L L L L +S ++ S G + L+ L LE + +
Sbjct: 299 KCTSLQHLTLDNC-VRLRSINCLGSLHRLHTLTVSRNRMPSEGFKGLANLRGLEVLRFAV 357
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
+L +AG+ L+ L+L +TD G A L + L HL L R + S ++R
Sbjct: 358 LN-RILTLESIAGIQCLRELDLTDNWLTDEGCAFLAHCSQLEHLKLAYCR-SVSDVRWVR 415
Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
+L++L++ + + + ++ SSL L+L+ ++ D + + GL L SL+VS
Sbjct: 416 ALTSLQTLDLSYTSVLNCFLDSLRSCSSLEELSLAYCKDVVD--ISFVVGLNCLKSLDVS 473
Query: 454 NSRITSAGLRHLKPLKNLRSLTLESCKVTA 483
+ + +GL + L +L+L C+ A
Sbjct: 474 GTCVDESGLSSVGKCPALTNLSLRECRQVA 503
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 130/503 (25%), Positives = 215/503 (42%), Gaps = 89/503 (17%)
Query: 33 LQDLCLGQYPGVND-KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
L+ L L V+D +W+ + +SL ++DLS + V + L L+ CS+L+ L +C
Sbjct: 397 LEHLKLAYCRSVSDVRWVRAL----TSLQTLDLSYTSVLNCFLDSLRSCSSLEELSLAYC 452
Query: 92 IQISD----------------------GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
+ D GL + LT+LS R + G+K
Sbjct: 453 KDVVDISFVVGLNCLKSLDVSGTCVDESGLSSVGKCPALTNLSLRECRQVA--GLKFVGA 510
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
L L+ L+ E + G + ++ KLE L+ + NC +D++ L L LK+L ++
Sbjct: 511 LKQLINLNAEGTGMLDGNIDHITCCQKLEVLSFR--NCPFLTDVRCLKDLGGLKALDLAG 568
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNRCQ----LSDD 243
+ VTD G++ L L +++ GC + L L+ L ++ +N L
Sbjct: 569 AYVTDEGVSTLSHCTSLESIDVSGCCLITHFGFLIGLTKLRNVVANGMNVVNVDGLLKSP 628
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL--ESLNLDSCGIGD--EGLVNLTGL 299
E+ S + S ++ +G V LT L E+ N+ + GI EG +L L
Sbjct: 629 SMERVSLVESRRLSFVGH--------VAAARLTELSVENSNISNVGINAVLEGCYSLQRL 680
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DAR 358
+C +SD L+ +S L L+ + L T +S S+ ++A +L+ L + D
Sbjct: 681 SLQQCPAISD-------LQGVSLLPKLQELLLRSTAVSRESVAQIAACENLRRLQISDCA 733
Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
+TD + L SL L LDL +T GVK +
Sbjct: 734 DVTDVNI--LCSLQSLVDLDLSKTNVTT------------------------GGVKGLAQ 767
Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 478
S+L LNLS +C + + L L L + + +T G+ L+ + L +LTL
Sbjct: 768 CSALKKLNLS-DCRFVTN-INCLGKLPVLRELYLCRTSVTDRGIAGLQHCRQLETLTLTK 825
Query: 479 C-KVTANDIKRLQSRDLPNLVSF 500
C +VT D LQ+ LP+L +F
Sbjct: 826 CSRVTKVD--GLQN-SLPHLETF 845
>gi|290974240|ref|XP_002669854.1| predicted protein [Naegleria gruberi]
gi|284083406|gb|EFC37110.1| predicted protein [Naegleria gruberi]
Length = 357
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 109/246 (44%), Gaps = 22/246 (8%)
Query: 189 CSKVTDSGIAYLK-----GLQKLTLLNLEGCPVTA--ACLDSLSALG------------- 228
C + + YL L++L L+ LE V A L+SLS +G
Sbjct: 89 CPYSFEEFVKYLDECQFDSLKRLNLIGLEVSNVVARFGSLESLSLIGMGAEIGNSIGNLS 148
Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
L YLNLN ++ + C+ K +K LNL N+I +E ++L L NL L L+ C I
Sbjct: 149 RLTYLNLNASSVTSESCQYIQKCELIKNLNLSDNKIGNESCLYLTKLKNLTILRLEDCNI 208
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
++G+ +L+ + L L +S ++ G ++ L NL S L S S++ + L
Sbjct: 209 SEKGVEHLSQIETLTILNVSKNRIEDDGFVNICKLKNLTS--LKAASCSVESIKNITNLI 266
Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
L SLNL I + G+ + LT L L L YL ++ L++ L
Sbjct: 267 KLTSLNLGQNSIDNEGVKIIGELTNLKTLTLENNVFQPEAVQYLTKLSSMEVLDLRDNNL 326
Query: 409 TDAGVK 414
+ VK
Sbjct: 327 SFDNVK 332
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 94/181 (51%), Gaps = 4/181 (2%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV-TAACLDSLSALGSLFYLN 234
+ L+ L L ++ S VT Y++ + + LNL + +CL L+ L +L L
Sbjct: 144 IGNLSRLTYLNLNASSVTSESCQYIQKCELIKNLNLSDNKIGNESCL-YLTKLKNLTILR 202
Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
L C +S+ G E S+I +L +LN+ N I D+ V++ L NL SL SC + E +
Sbjct: 203 LEDCNISEKGVEHLSQIETLTILNVSKNRIEDDGFVNICKLKNLTSLKAASCSV--ESIK 260
Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
N+T L L L L + + G++ + LTNL+++ L +++ L LSS++ L+
Sbjct: 261 NITNLIKLTSLNLGQNSIDNEGVKIIGELTNLKTLTLENNVFQPEAVQYLTKLSSMEVLD 320
Query: 355 L 355
L
Sbjct: 321 L 321
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 85/160 (53%), Gaps = 7/160 (4%)
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
+K+L +S +K+ + YL L+ LT+L LE C ++ ++ LS + +L LN+++ ++
Sbjct: 174 IKNLNLSDNKIGNESCLYLTKLKNLTILRLEDCNISEKGVEHLSQIETLTILNVSKNRIE 233
Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
DDG K+ +L L + E + ++ L L SLNL I +EG+ + L N
Sbjct: 234 DDGFVNICKLKNLTSLKAA--SCSVESIKNITNLIKLTSLNLGQNSIDNEGVKIIGELTN 291
Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESI-----NLSFTGI 336
LK L L + +++L+ L+++E + NLSF +
Sbjct: 292 LKTLTLENNVFQPEAVQYLTKLSSMEVLDLRDNNLSFDNV 331
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 107/238 (44%), Gaps = 42/238 (17%)
Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
NE +C + LD C +NL GL E+S+ ++
Sbjct: 83 NEFVSDCPYSFEEFVKY----LDECQFDSLKRLNLIGL------EVSNV---------VA 123
Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
+LES++L G G+ + LS L LNL+A +T + + +L+L
Sbjct: 124 RFGSLESLSLIGMGAEIGN--SIGNLSRLTYLNLNASSVTSESCQYIQKCELIKNLNLSD 181
Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN----------C 431
+I + YL KNL L + +++ GV+H+ + +LT+LN+S+N C
Sbjct: 182 NKIGNESCLYLTKLKNLTILRLEDCNISEKGVEHLSQIETLTILNVSKNRIEDDGFVNIC 241
Query: 432 NLTD-----------KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 478
L + ++++ I+ L L SLN+ + I + G++ + L NL++LTLE+
Sbjct: 242 KLKNLTSLKAASCSVESIKNITNLIKLTSLNLGQNSIDNEGVKIIGELTNLKTLTLEN 299
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 68/117 (58%), Gaps = 1/117 (0%)
Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
++ +L+ LT+L+L + +T Y++ + +++L + + + ++ L +LT+L
Sbjct: 143 SIGNLSRLTYLNLNASSVTSESCQYIQKCELIKNLNLSDNKIGNESCLYLTKLKNLTILR 202
Query: 427 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 483
L ++CN+++K +E +S + L LNVS +RI G ++ LKNL SL SC V +
Sbjct: 203 L-EDCNISEKGVEHLSQIETLTILNVSKNRIEDDGFVNICKLKNLTSLKAASCSVES 258
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 5/151 (3%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+++LS + + + ++L NL L C IS+ G+EHL + LT L+ + N I
Sbjct: 176 NLNLSDNKIGNESCLYLTKLKNLTILRLEDC-NISEKGVEHLSQIETLTILNVSK-NRIE 233
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
G L NL L C+ + N+ L+KL SLN+ N I + +K + LT
Sbjct: 234 DDGFVNICKLKNLTSLKAASCSV--ESIKNITNLIKLTSLNLGQ-NSIDNEGVKIIGELT 290
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
NLK+L + + + YL L + +L+L
Sbjct: 291 NLKTLTLENNVFQPEAVQYLTKLSSMEVLDL 321
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
L L+L G +++ A F +L SL + G G + G I +LS LT LNL+ + +
Sbjct: 107 SLKRLNLIGLEVSNVVAR----FGSLESLSLIGMG-AEIG-NSIGNLSRLTYLNLNAS-S 159
Query: 433 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
+T ++ + I + +LN+S+++I + +L LKNL L LE C ++ ++ L
Sbjct: 160 VTSESCQYIQKCELIKNLNLSDNKIGNESCLYLTKLKNLTILRLEDCNISEKGVEHL 216
>gi|241575665|ref|XP_002403227.1| F-box/LRR-repeat protein, putative [Ixodes scapularis]
gi|215502182|gb|EEC11676.1| F-box/LRR-repeat protein, putative [Ixodes scapularis]
Length = 411
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 86/313 (27%), Positives = 145/313 (46%), Gaps = 51/313 (16%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFN 89
+L +L L + D + IA L +DL G S+V+++GL+ + NL+SL+
Sbjct: 123 SLSELNLSMCKQITDNSLGRIAQHLKGLERLDLGGCSNVSNTGLLLVAWGLKNLRSLNLR 182
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
C +SD G+ HL G++ +A G + L L L+ C ++ +
Sbjct: 183 SCRGVSDPGIGHLAGMTP-----------------EAAHGTLRLEALCLQDCQKLTDDAL 225
Query: 150 NLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQK 205
GL L SLN+ +C +TD+ +K + + L+ L + SC ++D G+AYL +G +
Sbjct: 226 RFVSLGLADLRSLNLSFCASVTDAGLKHAARMPRLRELNLRSCDNISDLGLAYLAEGGSR 285
Query: 206 LTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
L L++ C L + L L L+LN C +SDDG + +
Sbjct: 286 LCALDVSFCDKVGDQGLLHASQGLFQLRSLSLNACPVSDDGIGRVA-------------- 331
Query: 264 ITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHL 320
+ L +L +L+L CG + D+GL + L L+C++L T++ + GL L
Sbjct: 332 ---------RSLGDLHTLHLGQCGRVTDKGLSLIADHLKQLRCIDLYGCTKITTVGLERL 382
Query: 321 SGLTNLESINLSF 333
L +L +NL
Sbjct: 383 MQLPHLGVLNLGL 395
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 104/352 (29%), Positives = 161/352 (45%), Gaps = 75/352 (21%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 203
++G+ LE+LN+ C +TD+ + + + +L L +S C ++TD+ + +LKGL
Sbjct: 91 IQGVPNLEALNMIGCFNLTDTWLSHAFVQDVHSLSELNLSMCKQITDNSLGRIAQHLKGL 150
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
++L L GC S G L V
Sbjct: 151 ERLDL----------------------------------GGCSNVSNTGLLLV------- 169
Query: 264 ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC--------NLKCLELSDTQ-VG 313
GL NL SLNL SC G+ D G+ +L G+ L+ L L D Q +
Sbjct: 170 --------AWGLKNLRSLNLRSCRGVSDPGIGHLAGMTPEAAHGTLRLEALCLQDCQKLT 221
Query: 314 SSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS 370
LR +S GL +L S+NLSF ++D L+ A + L+ LNL + I+D GLA L
Sbjct: 222 DDALRFVSLGLADLRSLNLSFCASVTDAGLKHAARMPRLRELNLRSCDNISDLGLAYLAE 281
Query: 371 -LTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLN 426
+ L LD+ F ++ D G + + LRSL + ++D G+ + + L L L+
Sbjct: 282 GGSRLCALDVSFCDKVGDQGLLHASQGLFQLRSLSLNACPVSDDGIGRVARSLGDLHTLH 341
Query: 427 LSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 476
L Q +TDK L LI+ L L +++ ++IT+ GL L L +L L L
Sbjct: 342 LGQCGRVTDKGLSLIADHLKQLRCIDLYGCTKITTVGLERLMQLPHLGVLNL 393
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 6/165 (3%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLE 139
++L+SL+ +FC ++D GL+H + L L+ R + I+ G+ A G L LD+
Sbjct: 233 ADLRSLNLSFCASVTDAGLKHAARMPRLRELNLRSCDNISDLGLAYLAEGGSRLCALDVS 292
Query: 140 RCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSG 196
C ++ G L +GL +L SL++ C D + L +L +L + C +VTD G
Sbjct: 293 FCDKVGDQGLLHASQGLFQLRSLSLNACPVSDDGIGRVARSLGDLHTLHLGQCGRVTDKG 352
Query: 197 IAYLK-GLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ 239
++ + L++L ++L GC +T L+ L L L LNL Q
Sbjct: 353 LSLIADHLKQLRCIDLYGCTKITTVGLERLMQLPHLGVLNLGLWQ 397
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 28/183 (15%)
Query: 320 LSGLTNLESIN------LSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS-L 371
+ G+ NLE++N L+ T +S ++ + SL LNL +QITD L + L
Sbjct: 91 IQGVPNLEALNMIGCFNLTDTWLSHAFVQDV---HSLSELNLSMCKQITDNSLGRIAQHL 147
Query: 372 TGLTHLDLFG-ARITDSG---AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLS------ 420
GL LDL G + ++++G A+ KNLRSL + G++D G+ H+ ++
Sbjct: 148 KGLERLDLGGCSNVSNTGLLLVAW--GLKNLRSLNLRSCRGVSDPGIGHLAGMTPEAAHG 205
Query: 421 SLTLLNLS-QNCN-LTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 476
+L L L Q+C LTD L +S GL L SLN+S + +T AGL+H + LR L L
Sbjct: 206 TLRLEALCLQDCQKLTDDALRFVSLGLADLRSLNLSFCASVTDAGLKHAARMPRLRELNL 265
Query: 477 ESC 479
SC
Sbjct: 266 RSC 268
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 121/245 (49%), Gaps = 32/245 (13%)
Query: 272 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 322
++G+ NLE+LN+ C + + ++ L L C +++D +G +HL G
Sbjct: 91 IQGVPNLEALNMIGCFNLTDTWLSHAFVQDVHSLSELNLSMCKQITDNSLGRIA-QHLKG 149
Query: 323 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-----G 373
L L+ N+S TG+ L GL +L+SLNL + R ++D G+ L +T G
Sbjct: 150 LERLDLGGCSNVSNTGL----LLVAWGLKNLRSLNLRSCRGVSDPGIGHLAGMTPEAAHG 205
Query: 374 LTHLDLFG----ARITDSGAAYLR-NFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 427
L+ ++TD ++ +LRSL + +TDAG+KH + L LNL
Sbjct: 206 TLRLEALCLQDCQKLTDDALRFVSLGLADLRSLNLSFCASVTDAGLKHAARMPRLRELNL 265
Query: 428 SQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 484
N++D L L G + L +L+VS ++ GL H + L LRSL+L +C V+ +
Sbjct: 266 RSCDNISDLGLAYLAEGGSRLCALDVSFCDKVGDQGLLHASQGLFQLRSLSLNACPVSDD 325
Query: 485 DIKRL 489
I R+
Sbjct: 326 GIGRV 330
>gi|343413825|emb|CCD21196.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
Length = 510
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 124/384 (32%), Positives = 183/384 (47%), Gaps = 52/384 (13%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
S+L++L + C I+D + L LS+L +L IT + + L +L L L
Sbjct: 20 SSLRTLGLSHCTGITD--VSPLSKLSSLRTLDLSHCTGIT--DVSPLSKLSSLHTLGLSH 75
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAY 199
CT I + L L L +L + C ITD + PLS ++L+ L +S C+ +TD ++
Sbjct: 76 CTGI-TDVPPLSVLSSLRTLGLSHCTGITD--VSPLSVFSSLRMLYLSHCTGITD--VSP 130
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
L L L L+L C + LS L SL L L+ C D SK+ SL L+L
Sbjct: 131 LSKLSSLRTLDLSHC-TGITDVSPLSKLSSLHTLGLSHCTGITD-VSPLSKLSSLHTLDL 188
Query: 260 GF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
ITD + L L++L +L L C GI D + L+ L +L+ L+LS G + +
Sbjct: 189 SHCTGITD--VPPLSVLSSLRTLGLSHCTGITD--VSPLSVLSSLRMLDLSHCT-GITDV 243
Query: 318 RHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLT 375
LS L++L ++ LS TGI+D S L+ LSSL L L ITD ++ LT++ G
Sbjct: 244 SPLSKLSSLRTLGLSHCTGITDVS--PLSKLSSLHILGLSHCTGITD--VSPLTTIIGFE 299
Query: 376 HLDLFGAR-ITD---------------------SGAAYLRNFKNLRSLEI--CGGGLTDA 411
L L ITD + + L +LR+L++ C G A
Sbjct: 300 KLYLSNCTGITDVSPLSKLSSLRSLDLSHCTGITDVSPLSELSSLRTLDLSHCRG---IA 356
Query: 412 GVKHIKDLSSLTLLNLSQNCNLTD 435
V + +LSSL +LNLS +TD
Sbjct: 357 NVSPLSNLSSLRMLNLSHCTGITD 380
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 142/495 (28%), Positives = 224/495 (45%), Gaps = 85/495 (17%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
+L+ L L G+ D S+ SSL ++DLS + +TD + L S+L +L +
Sbjct: 21 SLRTLGLSHCTGITDVSP---LSKLSSLRTLDLSHCTGITD--VSPLSKLSSLHTLGLSH 75
Query: 91 CIQISDG------------GLEHLRGLSNLTSLS-------FRRNNAITAQGMKAFAGLI 131
C I+D GL H G+++++ LS ++ + + L
Sbjct: 76 CTGITDVPPLSVLSSLRTLGLSHCTGITDVSPLSVFSSLRMLYLSHCTGITDVSPLSKLS 135
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLN-IKWCNCITDSDMKPLSGLTNLKSLQIS-C 189
+L LDL CT G+ ++ L KL SL+ + +C +D+ PLS L++L +L +S C
Sbjct: 136 SLRTLDLSHCT----GITDVSPLSKLSSLHTLGLSHCTGITDVSPLSKLSSLHTLDLSHC 191
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+ +TD + L L L L L C + LS L SL L+L+ C D S
Sbjct: 192 TGITD--VPPLSVLSSLRTLGLSHC-TGITDVSPLSVLSSLRMLDLSHCTGITD-VSPLS 247
Query: 250 KIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL 307
K+ SL+ L L ITD + L L++L L L C GI D + LT + + L L
Sbjct: 248 KLSSLRTLGLSHCTGITD--VSPLSKLSSLHILGLSHCTGITD--VSPLTTIIGFEKLYL 303
Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
S+ + + TGI+D S L+ LSSL++L+L + G+A
Sbjct: 304 SNCTGITDVSPLSKLSSLRSLDLSHCTGITDVS--PLSELSSLRTLDLSHCR----GIAN 357
Query: 368 LTSLTGLTHLDLFGAR----ITDSGAAYLRNFKNLRSLEI--CGG--------------- 406
++ L+ L+ L + ITD + L F +LR+L++ C G
Sbjct: 358 VSPLSNLSSLRMLNLSHCTGITD--VSPLSVFSSLRTLDLSHCTGITNVSPLSNLSSLRS 415
Query: 407 -------GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
G+TD V + +LSSL LNLS +TD + +S L+ L +L++S+
Sbjct: 416 LDLSHCTGITD--VSPLSELSSLEKLNLSHCTAITD--VSPLSELSSLHTLDLSH----C 467
Query: 460 AGLRHLKPLKNLRSL 474
G+ + PL L SL
Sbjct: 468 TGITDVSPLSKLSSL 482
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 94/343 (27%), Positives = 151/343 (44%), Gaps = 81/343 (23%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
S+L +LD + C I+D + L LS+L +L IT + + L +L LDL
Sbjct: 181 SSLHTLDLSHCTGITD--VPPLSVLSSLRTLGLSHCTGIT--DVSPLSVLSSLRMLDLSH 236
Query: 141 CTRIHGGLVNLKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD-SGI 197
CT G+ ++ L KL SL + +C +D+ PLS L++L L +S C+ +TD S +
Sbjct: 237 CT----GITDVSPLSKLSSLRTLGLSHCTGITDVSPLSKLSSLHILGLSHCTGITDVSPL 292
Query: 198 AYLKGLQKLTLLNLEGCP--------------VTAAC-----LDSLSALGSLFYLNLNRC 238
+ G +KL L N G + C + LS L SL L+L+ C
Sbjct: 293 TTIIGFEKLYLSNCTGITDVSPLSKLSSLRSLDLSHCTGITDVSPLSELSSLRTLDLSHC 352
Query: 239 QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGD------ 290
+ S + SL++LNL ITD + L ++L +L+L C GI +
Sbjct: 353 R-GIANVSPLSNLSSLRMLNLSHCTGITD--VSPLSVFSSLRTLDLSHCTGITNVSPLSN 409
Query: 291 ------------EGLVNLTGLCNLKCLE---------------LSD-TQVGSSGLRHLSG 322
G+ +++ L L LE LS+ + + + L H +G
Sbjct: 410 LSSLRSLDLSHCTGITDVSPLSELSSLEKLNLSHCTAITDVSPLSELSSLHTLDLSHCTG 469
Query: 323 LTNLESIN----------LSFTGISDGSLRKLAGLSSLKSLNL 355
+T++ ++ L TGI+D S L+ LSSL +L+
Sbjct: 470 ITDVSPLSKLSSLRTLDLLHCTGITDVS--PLSELSSLGTLDF 510
>gi|290995979|ref|XP_002680560.1| predicted protein [Naegleria gruberi]
gi|284094181|gb|EFC47816.1| predicted protein [Naegleria gruberi]
Length = 263
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 76/137 (55%)
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
++ + L L +++ Q+ G++++S + L S+N+S I D + ++ + L SLN+
Sbjct: 126 ISEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYISEMKQLTSLNI 185
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
+I++ G+ L+ + LT L++ RI+D A Y+ K L SL I + D GVK+
Sbjct: 186 YDNEISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYISEMKQLISLNIGYNEIGDKGVKY 245
Query: 416 IKDLSSLTLLNLSQNCN 432
I ++ LT L++ N N
Sbjct: 246 ISEMKQLTSLDIGDNPN 262
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 73/133 (54%), Gaps = 1/133 (0%)
Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
++ + L SLN+ QI G+ ++ + L L++ I D GA Y+ K L SL I
Sbjct: 126 ISEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYISEMKQLTSLNI 185
Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
+++ GVK++ ++ LT LN+ N ++D+ + IS + L+SLN+ + I G++
Sbjct: 186 YDNEISNEGVKYLSEMKQLTSLNIGVN-RISDEEAKYISEMKQLISLNIGYNEIGDKGVK 244
Query: 464 HLKPLKNLRSLTL 476
++ +K L SL +
Sbjct: 245 YISEMKQLTSLDI 257
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 72/131 (54%)
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
S++ L LN+ N+I E + ++ + L SLN+ IGD+G ++ + L L +
Sbjct: 127 SEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYISEMKQLTSLNIY 186
Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
D ++ + G+++LS + L S+N+ ISD + ++ + L SLN+ +I D G+ +
Sbjct: 187 DNEISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYISEMKQLISLNIGYNEIGDKGVKYI 246
Query: 369 TSLTGLTHLDL 379
+ + LT LD+
Sbjct: 247 SEMKQLTSLDI 257
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 74/141 (52%), Gaps = 1/141 (0%)
Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
V ++ + +S + L S+N++ I ++ ++ + L SLN+ +I D G ++ +
Sbjct: 118 VKTNQTKFISEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYISEM 177
Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
LT L+++ I++ G YL K L SL I ++D K+I ++ L LN+ N
Sbjct: 178 KQLTSLNIYDNEISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYISEMKQLISLNIGYN- 236
Query: 432 NLTDKTLELISGLTGLVSLNV 452
+ DK ++ IS + L SL++
Sbjct: 237 EIGDKGVKYISEMKQLTSLDI 257
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 68/129 (52%)
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
+ L SLN+ + I EG+ ++ + L L +S+ ++G G +++S + L S+N+
Sbjct: 129 MKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYISEMKQLTSLNIYDN 188
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
IS+ ++ L+ + L SLN+ +I+D ++ + L L++ I D G Y+
Sbjct: 189 EISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYISEMKQLISLNIGYNEIGDKGVKYISE 248
Query: 395 FKNLRSLEI 403
K L SL+I
Sbjct: 249 MKQLTSLDI 257
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 78/149 (52%), Gaps = 2/149 (1%)
Query: 163 KW--CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+W + + + K +S + L SL I+ +++ G+ Y+ +++L LN+ +
Sbjct: 111 RWLLASLVKTNQTKFISEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKG 170
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
+S + L LN+ ++S++G + S++ L LN+G N I+DE ++ + L S
Sbjct: 171 AKYISEMKQLTSLNIYDNEISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYISEMKQLIS 230
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSD 309
LN+ IGD+G+ ++ + L L++ D
Sbjct: 231 LNIGYNEIGDKGVKYISEMKQLTSLDIGD 259
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 74/143 (51%)
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
S V + ++ +++LT LN+ + + +S + L LN++ ++ D G +
Sbjct: 115 ASLVKTNQTKFISEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYI 174
Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
S++ L LN+ NEI++E + +L + L SLN+ I DE ++ + L L +
Sbjct: 175 SEMKQLTSLNIYDNEISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYISEMKQLISLNIG 234
Query: 309 DTQVGSSGLRHLSGLTNLESINL 331
++G G++++S + L S+++
Sbjct: 235 YNEIGDKGVKYISEMKQLTSLDI 257
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 379 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 438
L + + + ++ K L SL I + GVK+I ++ L LN+S+N + DK
Sbjct: 113 LLASLVKTNQTKFISEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISEN-EIGDKGA 171
Query: 439 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 498
+ IS + L SLN+ ++ I++ G+++L +K L SL + +++ + K + ++ L+
Sbjct: 172 KYISEMKQLTSLNIYDNEISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYIS--EMKQLI 229
Query: 499 S 499
S
Sbjct: 230 S 230
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 2/123 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI G++++ + L SL+ N I +G K + + L L++ + G+ L
Sbjct: 141 QICVEGVKYISEMKQLLSLNISEN-EIGDKGAKYISEMKQLTSLNIYDNEISNEGVKYLS 199
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+ +L SLNI N I+D + K +S + L SL I +++ D G+ Y+ +++LT L++
Sbjct: 200 EMKQLTSLNIG-VNRISDEEAKYISEMKQLISLNIGYNEIGDKGVKYISEMKQLTSLDIG 258
Query: 213 GCP 215
P
Sbjct: 259 DNP 261
Score = 45.4 bits (106), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
G+ + + +L SLNI N I D K +S + L SL I +++++ G+ YL +++L
Sbjct: 146 GVKYISEMKQLLSLNIS-ENEIGDKGAKYISEMKQLTSLNIYDNEISNEGVKYLSEMKQL 204
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
T LN+ ++ +S + L LN+ ++ D G + S++ L L++G N
Sbjct: 205 TSLNIGVNRISDEEAKYISEMKQLISLNIGYNEIGDKGVKYISEMKQLTSLDIGDN 260
>gi|290975580|ref|XP_002670520.1| predicted protein [Naegleria gruberi]
gi|284084080|gb|EFC37776.1| predicted protein [Naegleria gruberi]
Length = 265
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 117/243 (48%), Gaps = 2/243 (0%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+++LT L++ + + L +L L + L +G + S++ L +L++ N
Sbjct: 1 MKQLTALDISSNRIGDGGAMLIGGLKNLITLQIYENHLGPNGAKSISELKQLTILDISHN 60
Query: 263 EITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
I DE + + + + L +L++ GI ++GLV L + NLK L D Q+ + +S
Sbjct: 61 RIRDEGVKSISEKMDQLTNLDISFVGISEKGLVPLVEMKNLKILAFYDCQLSTKQAETIS 120
Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
+ + +++S+ ++ L+ + + L L L IT + ++ L LT L++
Sbjct: 121 KMKQITELDISYNLTNNEILKSIGEMKQLIKLYLVKNGITSHQVEIISQLKQLTVLNISE 180
Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
I + G Y+ K L L+I G+ GV I ++ LT L++ N + ++ L ++
Sbjct: 181 NEIRNEGVVYISGLKQLTELDISNNGIGYEGVLSICKMTQLTKLSIYNNP-IPEEALRIL 239
Query: 442 SGL 444
G+
Sbjct: 240 DGM 242
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 119/246 (48%), Gaps = 6/246 (2%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I DGG + GL NL +L N+ + G K+ + L L LD+ G+ ++
Sbjct: 13 RIGDGGAMLIGGLKNLITLQIYENH-LGPNGAKSISELKQLTILDISHNRIRDEGVKSIS 71
Query: 153 GLM-KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
M +L +L+I + I++ + PL + NLK L +++ + ++++T L++
Sbjct: 72 EKMDQLTNLDISFVG-ISEKGLVPLVEMKNLKILAFYDCQLSTKQAETISKMKQITELDI 130
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271
L S+ + L L L + ++ E S++ L VLN+ NEI +E +V+
Sbjct: 131 SYNLTNNEILKSIGEMKQLIKLYLVKNGITSHQVEIISQLKQLTVLNISENEIRNEGVVY 190
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
+ GL L L++ + GIG EG++++ + L L + + + LR L G+ +
Sbjct: 191 ISGLKQLTELDISNNGIGYEGVLSICKMTQLTKLSIYNNPIPEEALRILDGMKQFRQL-- 248
Query: 332 SFTGIS 337
TGIS
Sbjct: 249 -VTGIS 253
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 118/249 (47%), Gaps = 7/249 (2%)
Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
L L++ N I D + + GL NL +L + +G G +++ L L L++S ++
Sbjct: 4 LTALDISSNRIGDGGAMLIGGLKNLITLQIYENHLGPNGAKSISELKQLTILDISHNRIR 63
Query: 314 SSGLRHLS-GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
G++ +S + L ++++SF GIS+ L L + +LK L Q++ ++ +
Sbjct: 64 DEGVKSISEKMDQLTNLDISFVGISEKGLVPLVEMKNLKILAFYDCQLSTKQAETISKMK 123
Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
+T LD+ + + K L L + G+T V+ I L LT+LN+S+N
Sbjct: 124 QITELDISYNLTNNEILKSIGEMKQLIKLYLVKNGITSHQVEIISQLKQLTVLNISEN-E 182
Query: 433 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 492
+ ++ + ISGL L L++SN+ I G+ + + L L+ + N I R
Sbjct: 183 IRNEGVVYISGLKQLTELDISNNGIGYEGVLSICKMTQLTKLS-----IYNNPIPEEALR 237
Query: 493 DLPNLVSFR 501
L + FR
Sbjct: 238 ILDGMKQFR 246
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 101/201 (50%), Gaps = 2/201 (0%)
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
+ L +L++ S IGD G + + GL NL L++ + +G +G + +S L L +++S
Sbjct: 1 MKQLTALDISSNRIGDGGAMLIGGLKNLITLQIYENHLGPNGAKSISELKQLTILDISHN 60
Query: 335 GISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
I D ++ ++ + L +L++ I++ GL L + L L + +++ A +
Sbjct: 61 RIRDEGVKSISEKMDQLTNLDISFVGISEKGLVPLVEMKNLKILAFYDCQLSTKQAETIS 120
Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
K + L+I + +K I ++ L L L +N +T +E+IS L L LN+S
Sbjct: 121 KMKQITELDISYNLTNNEILKSIGEMKQLIKLYLVKN-GITSHQVEIISQLKQLTVLNIS 179
Query: 454 NSRITSAGLRHLKPLKNLRSL 474
+ I + G+ ++ LK L L
Sbjct: 180 ENEIRNEGVVYISGLKQLTEL 200
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 112/257 (43%), Gaps = 26/257 (10%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQ 204
GG + + GL L +L I + N + + K +S L L L IS +++ D G+ + + +
Sbjct: 17 GGAMLIGGLKNLITLQI-YENHLGPNGAKSISELKQLTILDISHNRIRDEGVKSISEKMD 75
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
+LT L++ ++ L L + +L L CQLS E SK+ + L++ +N
Sbjct: 76 QLTNLDISFVGISEKGLVPLVEMKNLKILAFYDCQLSTKQAETISKMKQITELDISYNLT 135
Query: 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324
+E L + + L L L GI + ++ L L L +S+ ++ + G+ ++SGL
Sbjct: 136 NNEILKSIGEMKQLIKLYLVKNGITSHQVEIISQLKQLTVLNISENEIRNEGVVYISGLK 195
Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
L +++S GI G+ ++ +T LT L ++ I
Sbjct: 196 QLTELDISNNGIGY------------------------EGVLSICKMTQLTKLSIYNNPI 231
Query: 385 TDSGAAYLRNFKNLRSL 401
+ L K R L
Sbjct: 232 PEEALRILDGMKQFRQL 248
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 78/171 (45%), Gaps = 33/171 (19%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ D+ + I+ + L ++D+S +++ GL+ L + NL+ L F C Q+S E +
Sbjct: 62 IRDEGVKSISEKMDQLTNLDISFVGISEKGLVPLVEMKNLKILAFYDC-QLSTKQAETIS 120
Query: 104 GLSNLTSLSFRR---NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+ +T L NN I +K+ + L+KL L +
Sbjct: 121 KMKQITELDISYNLTNNEI----LKSIGEMKQLIKLYLVK-------------------- 156
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
N IT ++ +S L L L IS +++ + G+ Y+ GL++LT L++
Sbjct: 157 -----NGITSHQVEIISQLKQLTVLNISENEIRNEGVVYISGLKQLTELDI 202
>gi|254410000|ref|ZP_05023780.1| Ras family, putative [Coleofasciculus chthonoplastes PCC 7420]
gi|196183036|gb|EDX78020.1| Ras family, putative [Coleofasciculus chthonoplastes PCC 7420]
Length = 1115
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 94/314 (29%), Positives = 158/314 (50%), Gaps = 24/314 (7%)
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKL 157
E + L NLT LS RN Q ++ + L+NL +L+L + T++ + L L +L
Sbjct: 131 ESISQLVNLTQLSLSRNQL--TQVPESISQLVNLTQLNLSYNQLTQVPESISQLVNLTQL 188
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+ L++ + +S +S L NL L +S +++T + + L LT L+L G +T
Sbjct: 189 D-LSVNKLTQVPES----ISQLVNLTQLNLSYNQLTQVSES-ISQLVNLTQLSLSGNKLT 242
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
+S+S L +L L+L+ +L+ E S++ +L L+L N++T + + L N
Sbjct: 243 QVS-ESISQLVNLTQLSLSGNKLTQ-VPESISQLVNLTQLSLSDNQLT-QVSESISQLVN 299
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSD---TQVGSSGLRHLSGLTNLESINLSFT 334
L L+L S + +++ L NL L+LS TQV S +S L NL +NLS
Sbjct: 300 LTQLDLSSNQLTQVS-ESISQLVNLTQLDLSSNQLTQVSES----ISQLVNLTQLNLSIN 354
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
++ ++ L +L LNL Q+T +++ L LT LDLFG +IT+ +L
Sbjct: 355 KLTQVP-ESISQLVNLTWLNLSDNQLTQVP-ESISQLVNLTQLDLFGNKITEI-PDWLEE 411
Query: 395 FKNLRSLEICGGGL 408
NL+ L++ L
Sbjct: 412 LPNLKELDLRQNPL 425
>gi|124009437|ref|ZP_01694114.1| leucine-rich-repeat protein [Microscilla marina ATCC 23134]
gi|123984985|gb|EAY24943.1| leucine-rich-repeat protein [Microscilla marina ATCC 23134]
Length = 966
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 110/227 (48%), Gaps = 38/227 (16%)
Query: 287 GIGD----EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
G GD E L L GL L+ L LS + S ++ L+ +E +NLS I+D L
Sbjct: 92 GYGDLWGIEDLQPLVGLTQLQTLNLSSNHI--SDIKVLANFPTMEKLNLSQNTIAD--LS 147
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
LAGL SLK+LNL+ Q D G L SL LT L L +++D A L+ KNLRSL
Sbjct: 148 PLAGLESLKTLNLNWNQTLDLG--TLPSLPNLTTLYLNSCQLSDIQA--LKQHKNLRSLY 203
Query: 403 ICGGGLTDAGV--------------KHIKDLSSL----TLLNLSQNCNLTDKTLELISGL 444
+ L D HI+D S L TL LS N N K L ++GL
Sbjct: 204 LRSNQLADLSPLTNLETLAYLRLDENHIEDFSPLASLQTLEALSLNKNRI-KDLAPLAGL 262
Query: 445 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 491
L L ++ ++I S LKPL L+ LT+ +T N I+ +Q+
Sbjct: 263 ITLRKLYLNENKIIS-----LKPLAKLQKLTV--LTLTDNKIQDVQA 302
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 132/283 (46%), Gaps = 54/283 (19%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
D++PL GLT L++L +S + ++D + L+ ++
Sbjct: 100 EDLQPLVGLTQLQTLNLSSNHISDIKV--------------------------LANFPTM 133
Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
LNL++ ++D + + SLK LNL +N+ D L L L NL +L L+SC + D
Sbjct: 134 EKLNLSQNTIAD--LSPLAGLESLKTLNLNWNQTLD--LGTLPSLPNLTTLYLNSCQLSD 189
Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI---NLSFTGISDGSLRKLAGL 347
+ L NL+ L L Q+ LS LTNLE++ L I D S LA L
Sbjct: 190 --IQALKQHKNLRSLYLRSNQLAD-----LSPLTNLETLAYLRLDENHIEDFS--PLASL 240
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
+L++L+L+ +I D LA L L L L L +I L+ L+ L +
Sbjct: 241 QTLEALSLNKNRIKD--LAPLAGLITLRKLYLNENKIIS-----LKPLAKLQKLTVLT-- 291
Query: 408 LTDAGVKHIKDLSSL---TLLNLSQNCNLTDKTLELISGLTGL 447
LTD ++ ++ L SL L+LSQN + L+ ++ LTGL
Sbjct: 292 LTDNKIQDVQALHSLLQLDTLDLSQNQIMDVSPLQSLARLTGL 334
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 130/280 (46%), Gaps = 21/280 (7%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
L +E LN+ N I +D+ PL+GL +LK+L ++ ++ D G L L LT L
Sbjct: 127 LANFPTMEKLNLS-QNTI--ADLSPLAGLESLKTLNLNWNQTLDLGT--LPSLPNLTTLY 181
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
L C ++ + +L +L L L QL+D + + +L L L N I D
Sbjct: 182 LNSCQLSD--IQALKQHKNLRSLYLRSNQLAD--LSPLTNLETLAYLRLDENHIED--FS 235
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
L L LE+L+L+ I D L L GL L+ L L++ ++ S L+ L+ L L +
Sbjct: 236 PLASLQTLEALSLNKNRIKD--LAPLAGLITLRKLYLNENKIIS--LKPLAKLQKLTVLT 291
Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
L+ I D ++ L L L +L+L QI D ++ L SL LT L L +I D
Sbjct: 292 LTDNKIQD--VQALHSLLQLDTLDLSQNQIMD--VSPLQSLARLTGLGLGVNQIQD--IC 345
Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
L L+ L + +T+ V L L +L L N
Sbjct: 346 PLAGLIELKILVLANNQITELPVHFFDKLHQLLVLELENN 385
>gi|320165161|gb|EFW42060.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 641
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 91/215 (42%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
+T+ + + L +L YLNLN + F+ + +LK L LG+NE+ D GL
Sbjct: 74 ITSISAGAFTGLTALTYLNLNSNSIRSISANAFTGLTALKHLPLGYNELADISATAFAGL 133
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
T L +L+L S I L L L L Q+ + +GL+ L +NL
Sbjct: 134 TALNALHLQSNQITSISASAFASLTTLTYLRLDSNQLTNFAANVFAGLSALALLNLESNQ 193
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395
I+ S L++L L L QIT +A T LT L L+LF +IT A
Sbjct: 194 ITSISANAFTDLTALTLLYLQRNQITSIPTSAFTGLTALKDLELFNNQITAIAANTFSGL 253
Query: 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
L L + +T L +LT L L N
Sbjct: 254 SALTQLYLFSNQITSIAANAFTGLPALTALALDGN 288
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 98/207 (47%), Gaps = 1/207 (0%)
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
N SL L++ I TGL L L L+ + S +GLT L+ + L + +
Sbjct: 63 NTTSLELNNNQITSISAGAFTGLTALTYLNLNSNSIRSISANAFTGLTALKHLPLGYNEL 122
Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
+D S AGL++L +L+L + QIT +A SLT LT+L L ++T+ A
Sbjct: 123 ADISATAFAGLTALNALHLQSNQITSISASAFASLTTLTYLRLDSNQLTNFAANVFAGLS 182
Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456
L L + +T DL++LTLL L +N +T +GLT L L + N++
Sbjct: 183 ALALLNLESNQITSISANAFTDLTALTLLYLQRN-QITSIPTSAFTGLTALKDLELFNNQ 241
Query: 457 ITSAGLRHLKPLKNLRSLTLESCKVTA 483
IT+ L L L L S ++T+
Sbjct: 242 ITAIAANTFSGLSALTQLYLFSNQITS 268
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 106/255 (41%), Gaps = 26/255 (10%)
Query: 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
N TSL NN IT+ AF GL L L+L N
Sbjct: 63 NTTSLELN-NNQITSISAGAFTGLTALTYLNLNS-------------------------N 96
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
I +GLT LK L + +++ D GL L L+L+ +T+ + ++
Sbjct: 97 SIRSISANAFTGLTALKHLPLGYNELADISATAFAGLTALNALHLQSNQITSISASAFAS 156
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286
L +L YL L+ QL++ F+ + +L +LNL N+IT LT L L L
Sbjct: 157 LTTLTYLRLDSNQLTNFAANVFAGLSALALLNLESNQITSISANAFTDLTALTLLYLQRN 216
Query: 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
I TGL LK LEL + Q+ + SGL+ L + L I+ + G
Sbjct: 217 QITSIPTSAFTGLTALKDLELFNNQITAIAANTFSGLSALTQLYLFSNQITSIAANAFTG 276
Query: 347 LSSLKSLNLDARQIT 361
L +L +L LD + T
Sbjct: 277 LPALTALALDGNRFT 291
>gi|451982090|ref|ZP_21930421.1| exproted hypothetical protein [Nitrospina gracilis 3/211]
gi|451760644|emb|CCQ91701.1| exproted hypothetical protein [Nitrospina gracilis 3/211]
Length = 323
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 102/221 (46%), Gaps = 18/221 (8%)
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV-- 256
YL LQ L L N P AA L S + L +LNL Q+ G E + +LK
Sbjct: 94 YLPNLQTLNLFNNRIGPEGAAALASSNKYPHLSHLNLWGNQIGPSGAEALANSDTLKALE 153
Query: 257 -LNLGFNEITDECLVHLKGLTNLES---LNLDSCGIGDEGLVNLTG---LCNLKCLELSD 309
L+L N I D L+ L LE L LD G+GD GL L L NL+ L LS
Sbjct: 154 YLDLSGNGIGDPGLIALARSPVLERIRILRLDKNGVGDRGLAALASSPYLGNLEVLSLSH 213
Query: 310 TQVGSSGLRHLSG---LTNLESINLSFTGISDGSLRKLA---GLSSLKSLNLDARQITDT 363
++G G + L+ + L + L I D ++ LA +L+ L+L IT+T
Sbjct: 214 NEIGQEGAKVLAESPYIRKLRQLRLERNRIGDVGVKHLAESEAFQNLEELDLQWNGITET 273
Query: 364 G---LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
G LA LT L L L+G I ++G ++ NL+++
Sbjct: 274 GAHDLAGSPVLTRLNRLYLWGNEIGNAGVRAIKKSDNLKNV 314
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 90/286 (31%), Positives = 130/286 (45%), Gaps = 29/286 (10%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS------KIGSLKVLNLGFNEITDECL 269
+ A L L G+ LN + L DDG + + K+ +L + + GF + L
Sbjct: 31 INAIILKELKQNGTHLKLNFS-GMLGDDGVRQLARSRLLKKVETLDLNSHGFGNAGAQGL 89
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTG---LCNLKCLELSDTQVGSSGLRHLSG---L 323
K L NL++LNL + IG EG L +L L L Q+G SG L+ L
Sbjct: 90 ADSKYLPNLQTLNLFNNRIGPEGAAALASSNKYPHLSHLNLWGNQIGPSGAEALANSDTL 149
Query: 324 TNLESINLSFTGISDGSLRKLAG---LSSLKSLNLDARQITDTGLAALTS---LTGLTHL 377
LE ++LS GI D L LA L ++ L LD + D GLAAL S L L L
Sbjct: 150 KALEYLDLSGNGIGDPGLIALARSPVLERIRILRLDKNGVGDRGLAALASSPYLGNLEVL 209
Query: 378 DLFGARITDSGAAYLRN---FKNLRSLEICGGGLTDAGVKHIKD---LSSLTLLNLSQNC 431
L I GA L + LR L + + D GVKH+ + +L L+L N
Sbjct: 210 SLSHNEIGQEGAKVLAESPYIRKLRQLRLERNRIGDVGVKHLAESEAFQNLEELDLQWNG 269
Query: 432 NLTDKTLELISG---LTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
+T+ ++G LT L L + + I +AG+R +K NL+++
Sbjct: 270 -ITETGAHDLAGSPVLTRLNRLYLWGNEIGNAGVRAIKKSDNLKNV 314
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 23/208 (11%)
Query: 312 VGSSGLRHLSG---LTNLESINLSFTGISDGSLRKLAG---LSSLKSLNLDARQITDTGL 365
+G G+R L+ L +E+++L+ G + + LA L +L++LNL +I G
Sbjct: 54 LGDDGVRQLARSRLLKKVETLDLNSHGFGNAGAQGLADSKYLPNLQTLNLFNNRIGPEGA 113
Query: 366 AALTS---LTGLTHLDLFGARITDSGAAYLRNFKNLRSLE---ICGGGLTDAGVKHIKD- 418
AAL S L+HL+L+G +I SGA L N L++LE + G G+ D G+ +
Sbjct: 114 AALASSNKYPHLSHLNLWGNQIGPSGAEALANSDTLKALEYLDLSGNGIGDPGLIALARS 173
Query: 419 --LSSLTLLNLSQNCNLTDKTLELISG---LTGLVSLNVSNSRITSAGLRHLKP---LKN 470
L + +L L +N + D+ L ++ L L L++S++ I G + L ++
Sbjct: 174 PVLERIRILRLDKNG-VGDRGLAALASSPYLGNLEVLSLSHNEIGQEGAKVLAESPYIRK 232
Query: 471 LRSLTLESCKVTANDIKRL-QSRDLPNL 497
LR L LE ++ +K L +S NL
Sbjct: 233 LRQLRLERNRIGDVGVKHLAESEAFQNL 260
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 87/191 (45%), Gaps = 34/191 (17%)
Query: 40 QYPGVN--DKWMDVIASQGSSLLS----------VDLSGSDVTDSGLIHLKDCSNLQ--- 84
+YP ++ + W + I G+ L+ +DLSG+ + D GLI L L+
Sbjct: 121 KYPHLSHLNLWGNQIGPSGAEALANSDTLKALEYLDLSGNGIGDPGLIALARSPVLERIR 180
Query: 85 --SLDFNFCIQISDGGLEHLRG---LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
LD N + D GL L L NL LS +N I +G K A + KL
Sbjct: 181 ILRLDKN---GVGDRGLAALASSPYLGNLEVLSL-SHNEIGQEGAKVLAESPYIRKLRQL 236
Query: 140 RCTRIHGGLVNLKGLMK------LESLNIKWCNCITDSDMKPLSG---LTNLKSLQISCS 190
R R G V +K L + LE L+++W N IT++ L+G LT L L + +
Sbjct: 237 RLERNRIGDVGVKHLAESEAFQNLEELDLQW-NGITETGAHDLAGSPVLTRLNRLYLWGN 295
Query: 191 KVTDSGIAYLK 201
++ ++G+ +K
Sbjct: 296 EIGNAGVRAIK 306
>gi|224124626|ref|XP_002330070.1| predicted protein [Populus trichocarpa]
gi|222871495|gb|EEF08626.1| predicted protein [Populus trichocarpa]
Length = 1126
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 138/441 (31%), Positives = 209/441 (47%), Gaps = 74/441 (16%)
Query: 53 ASQG-SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI---QISDGGLEHLRGLSNL 108
AS G S+L S+DLS + +T SGL L S LQ L+ N + Q +D + G S+L
Sbjct: 131 ASTGFSALKSLDLSDNQLTGSGLKVLS--SRLQKLE-NLHLSGNQCNDSIFSSITGFSSL 187
Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
SL N +T G+K + L KLE+L++ C
Sbjct: 188 KSLDLSY-NELTGSGLKVLS-----------------------SRLQKLENLHLSGNQC- 222
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG-LQKLTLLNLEGCPVTAACLDSLSAL 227
DS ++G ++LKSL +S ++VT SG+ L L+KL L+L + SLS
Sbjct: 223 NDSIFSSITGFSSLKSLDLSYNEVTGSGLKVLSSKLKKLENLDLSDNQCNDSIFSSLSGF 282
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
SL YLNL++ QL+ + I S +VL + GL NLE L+L S
Sbjct: 283 SSLKYLNLSQNQLTGSS----TGINSFQVL--------------VSGLRNLEELHLYSNK 324
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQV-GSSGLRHLSGLTNLESINLSFTGISDGSL-RKLA 345
+ + L +L+G LK L+LSD GS+G L+GL NLE++ L T + L L
Sbjct: 325 LNNNILSSLSGFSTLKSLDLSDNMFTGSTG---LNGLRNLETLYLGNTDFKESILIESLG 381
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
L SLK+L+ T G L + + L + L + + A++LRN L +L++
Sbjct: 382 ALPSLKTLDASYSNFTHFG-KGLCNSSSLEEVFLDDSSLP---ASFLRNIGPLSTLKV-- 435
Query: 406 GGLTDAGVKHIK--------DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
L+ AGV +L +L L LS N NL + L+ L L++S++++
Sbjct: 436 --LSLAGVDFNSTLPAQGWCELKNLEELYLSGN-NLKGVLPPCLGNLSFLQILDLSHNQL 492
Query: 458 T-SAGLRHLKPLKNLRSLTLE 477
+ +L LK LRSL+++
Sbjct: 493 EGNIAFSYLSHLKQLRSLSIK 513
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 111/203 (54%), Gaps = 12/203 (5%)
Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
TG LK L+LSD Q+ SGL+ LS L LE+++LS +D + G SSLKSL+L
Sbjct: 133 TGFSALKSLDLSDNQLTGSGLKVLSSRLQKLENLHLSGNQCNDSIFSSITGFSSLKSLDL 192
Query: 356 DARQITDTGLAALTS-LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
++T +GL L+S L L +L L G + DS + + F +L+SL++ +T +G+K
Sbjct: 193 SYNELTGSGLKVLSSRLQKLENLHLSGNQCNDSIFSSITGFSSLKSLDLSYNEVTGSGLK 252
Query: 415 HIKD-LSSLTLLNLSQN-CNLTDKTLELISGLTGLVSLNVSNSRIT--SAGLRHLKP--- 467
+ L L L+LS N CN D +SG + L LN+S +++T S G+ +
Sbjct: 253 VLSSKLKKLENLDLSDNQCN--DSIFSSLSGFSSLKYLNLSQNQLTGSSTGINSFQVLVS 310
Query: 468 -LKNLRSLTLESCKVTANDIKRL 489
L+NL L L S K+ N + L
Sbjct: 311 GLRNLEELHLYSNKLNNNILSSL 333
>gi|406832462|ref|ZP_11092056.1| ribonuclease inhibitor [Schlesneria paludicola DSM 18645]
Length = 306
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 85/191 (44%), Gaps = 8/191 (4%)
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS--CGIGDEGLVNLT 297
L+ DGC + + + L L L DE L L LT L L+++ CG G
Sbjct: 92 LTQDGCRRLASLTKLISLRLAVP--NDEALSDLAALTELGDLSVEGNICG---RGFHRFP 146
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL-AGLSSLKSLNLD 356
L L ++ + S +R ++ + + S+T I+D LR L ++ L
Sbjct: 147 ETSELHSLRIASAKNISDEIRSINTFRGIRRLVFSYTPITDNHLRALRPTVARLFGFEAY 206
Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
+ITD G+ L L L L GA ITD+G +R LR L + LTD +KH+
Sbjct: 207 GSEITDDGVREFQDLPELERLSLVGAHITDTGVMAMRQLPKLRELTLVDNELTDNCIKHL 266
Query: 417 KDLSSLTLLNL 427
K S L ++L
Sbjct: 267 KQFSQLRHVSL 277
Score = 41.6 bits (96), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 88/220 (40%), Gaps = 29/220 (13%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+T G + A L L+ L L L +L L +L L+++ C P +
Sbjct: 92 LTQDGCRRLASLTKLISLRL--AVPNDEALSDLAALTELGDLSVEGNICGRGFHRFPET- 148
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNR 237
+ L SL+I+ +K I + + + L P+T L +L + LF
Sbjct: 149 -SELHSLRIASAKNISDEIRSINTFRGIRRLVFSYTPITDNHLRALRPTVARLFGFEAYG 207
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
+++DDG +F + L LE L+L I D G++ +
Sbjct: 208 SEITDDGVREF------------------------QDLPELERLSLVGAHITDTGVMAMR 243
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L L+ L L D ++ + ++HL + L ++L T +S
Sbjct: 244 QLPKLRELTLVDNELTDNCIKHLKQFSQLRHVSLCKTKVS 283
>gi|46445832|ref|YP_007197.1| F-box protein [Candidatus Protochlamydia amoebophila UWE25]
gi|46399473|emb|CAF22922.1| putative F-box protein [Candidatus Protochlamydia amoebophila
UWE25]
Length = 329
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 2/133 (1%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LK+C NL+ L C ++D GL HL L L L+ + +T G+
Sbjct: 197 LTDAHLLTLKNCKNLKVLQLQACRNLTDVGLAHLAPLEALKHLNLSECDNLTDAGLAHLT 256
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
LI L LDL+ C ++ GL L+ L+ L+ LN+K C+ +TD + L L L+ L +
Sbjct: 257 LLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKGCDNLTDIGLAHLRPLVALQHLDL 316
Query: 188 S-CSKVTDSGIAY 199
C+ +TD+G+A+
Sbjct: 317 DGCNNLTDAGLAH 329
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 84/145 (57%), Gaps = 5/145 (3%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E+++ +TD+ + L NLK LQ+ +C +TD G+A+L L+ L LNL C
Sbjct: 185 EIEAIHFSDNVYLTDAHLLTLKNCKNLKVLQLQACRNLTDVGLAHLAPLEALKHLNLSEC 244
Query: 215 P-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVH 271
+T A L L+ L +L YL+L C +L+D G + + +L+ LNL G + +TD L H
Sbjct: 245 DNLTDAGLAHLTLLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKGCDNLTDIGLAH 304
Query: 272 LKGLTNLESLNLDSC-GIGDEGLVN 295
L+ L L+ L+LD C + D GL +
Sbjct: 305 LRPLVALQHLDLDGCNNLTDAGLAH 329
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 75/137 (54%), Gaps = 5/137 (3%)
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSL 341
D+ + D L+ L NLK L+L + + GL HL+ L L+ +NLS ++D L
Sbjct: 193 DNVYLTDAHLLTLKNCKNLKVLQLQACRNLTDVGLAHLAPLEALKHLNLSECDNLTDAGL 252
Query: 342 RKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLR 399
L L +L+ L+L ++TD GLA L L L HL+L G +TD G A+LR L+
Sbjct: 253 AHLTLLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKGCDNLTDIGLAHLRPLVALQ 312
Query: 400 SLEICG-GGLTDAGVKH 415
L++ G LTDAG+ H
Sbjct: 313 HLDLDGCNNLTDAGLAH 329
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 80/153 (52%), Gaps = 7/153 (4%)
Query: 317 LRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGL 374
L H S +E+I+ S ++D L L +LK L L A R +TD GLA L L L
Sbjct: 179 LNHFSN--EIEAIHFSDNVYLTDAHLLTLKNCKNLKVLQLQACRNLTDVGLAHLAPLEAL 236
Query: 375 THLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCN 432
HL+L +TD+G A+L L+ L++ G LTDAG+ ++ L +L LNL N
Sbjct: 237 KHLNLSECDNLTDAGLAHLTLLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKGCDN 296
Query: 433 LTDKTLELISGLTGLVSLNVSN-SRITSAGLRH 464
LTD L + L L L++ + +T AGL H
Sbjct: 297 LTDIGLAHLRPLVALQHLDLDGCNNLTDAGLAH 329
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 79/148 (53%), Gaps = 5/148 (3%)
Query: 102 LRGLSN-LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLES 159
L SN + ++ F N +T + NL L L+ C + GL +L L L+
Sbjct: 179 LNHFSNEIEAIHFSDNVYLTDAHLLTLKNCKNLKVLQLQACRNLTDVGLAHLAPLEALKH 238
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VT 217
LN+ C+ +TD+ + L+ L L+ L + C+K+TD+G+A L+ L L LNL+GC +T
Sbjct: 239 LNLSECDNLTDAGLAHLTLLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKGCDNLT 298
Query: 218 AACLDSLSALGSLFYLNLNRC-QLSDDG 244
L L L +L +L+L+ C L+D G
Sbjct: 299 DIGLAHLRPLVALQHLDLDGCNNLTDAG 326
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Query: 384 ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
+TD+ L+N KNL+ L++ LTD G+ H+ L +L LNLS+ NLTD L ++
Sbjct: 197 LTDAHLLTLKNCKNLKVLQLQACRNLTDVGLAHLAPLEALKHLNLSECDNLTDAGLAHLT 256
Query: 443 GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 479
L L L++ +++T AGL L+PL L+ L L+ C
Sbjct: 257 LLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKGC 294
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 57 SSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
+L ++LS D +TD+GL HL LQ LD C +++D GL LR L L L+ +
Sbjct: 234 EALKHLNLSECDNLTDAGLAHLTLLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKG 293
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI 144
+ +T G+ L+ L LDL+ C +
Sbjct: 294 CDNLTDIGLAHLRPLVALQHLDLDGCNNL 322
>gi|147852997|emb|CAN79070.1| hypothetical protein VITISV_031965 [Vitis vinifera]
Length = 661
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 138/309 (44%), Gaps = 1/309 (0%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
+ LT L L +S +++TD + L KLT L+L +T + L L YLNL
Sbjct: 115 IGSLTKLTILDLSHNQLTDPIPHQIGSLTKLTHLDLSFNQLTGPIPHQIGTLTELTYLNL 174
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295
+ L+D ++ L L+L FN++T + LT L L L S + D +
Sbjct: 175 SSNVLTDVIPSSLGRLTKLTHLDLSFNQLTGPIPHQIGTLTELTYLPLSSNVLTDVIPSS 234
Query: 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
L L L L+L ++ S + LT L ++LS ++ L ++ L L L
Sbjct: 235 LGRLTKLTHLDLYCNKLIGSIPHQIGSLTKLTHLDLSSNQLTGPILNQIGTLIELTYLEF 294
Query: 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415
++T ++L LT LTHL LF ++ S + L L I G LT A
Sbjct: 295 SGNELTGVIPSSLGRLTKLTHLGLFYNQLNGSIPHQIGTLTELTYLHISGNELTGAMPSS 354
Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 475
+ L+ L L+L +N + I + LV+L++S++ I+ LK LK L L
Sbjct: 355 LGCLTKLISLDLCKN-QINGSIPPEIGNIKSLVTLDLSDNLISGEIPSSLKNLKKLGRLD 413
Query: 476 LESCKVTAN 484
L +++ N
Sbjct: 414 LSYNRLSGN 422
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 125/287 (43%), Gaps = 12/287 (4%)
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
D + +L L L+L+ QL+D + + L L+L FN++T + LT L L
Sbjct: 113 DQIGSLTKLTILDLSHNQLTDPIPHQIGSLTKLTHLDLSFNQLTGPIPHQIGTLTELTYL 172
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
NL S + D +L L L L+LS Q+ + LT L + LS ++D
Sbjct: 173 NLSSNVLTDVIPSSLGRLTKLTHLDLSFNQLTGPIPHQIGTLTELTYLPLSSNVLTDVIP 232
Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
L L+ L L+L ++ + + SLT LTHLDL ++T + L L
Sbjct: 233 SSLGRLTKLTHLDLYCNKLIGSIPHQIGSLTKLTHLDLSSNQLTGPILNQIGTLIELTYL 292
Query: 402 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
E G LT + L+ LT L L N L I LT L L++S + +T A
Sbjct: 293 EFSGNELTGVIPSSLGRLTKLTHLGLFYN-QLNGSIPHQIGTLTELTYLHISGNELTGAM 351
Query: 462 LRHLKPLKNLRSLTLESCKVTAN--------DIKRLQSRDLP-NLVS 499
L L L SL L CK N +IK L + DL NL+S
Sbjct: 352 PSSLGCLTKLISLDL--CKNQINGSIPPEIGNIKSLVTLDLSDNLIS 396
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 122/277 (44%), Gaps = 1/277 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L KL L++ + N +T + LT L L +S + +TD + L L KLT L+L
Sbjct: 142 LTKLTHLDLSF-NQLTGPIPHQIGTLTELTYLNLSSNVLTDVIPSSLGRLTKLTHLDLSF 200
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
+T + L L YL L+ L+D ++ L L+L N++ +
Sbjct: 201 NQLTGPIPHQIGTLTELTYLPLSSNVLTDVIPSSLGRLTKLTHLDLYCNKLIGSIPHQIG 260
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
LT L L+L S + L + L L LE S ++ L LT L + L +
Sbjct: 261 SLTKLTHLDLSSNQLTGPILNQIGTLIELTYLEFSGNELTGVIPSSLGRLTKLTHLGLFY 320
Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
++ ++ L+ L L++ ++T ++L LT L LDL +I S +
Sbjct: 321 NQLNGSIPHQIGTLTELTYLHISGNELTGAMPSSLGCLTKLISLDLCKNQINGSIPPEIG 380
Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
N K+L +L++ ++ +K+L L L+LS N
Sbjct: 381 NIKSLVTLDLSDNLISGEIPSSLKNLKKLGRLDLSYN 417
>gi|386333662|ref|YP_006029832.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
gi|334196111|gb|AEG69296.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
Length = 637
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 103/383 (26%), Positives = 165/383 (43%), Gaps = 41/383 (10%)
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+G + AG ++L L+ GG LK LESL++ N I + L+G +
Sbjct: 240 RGAQLLAGKLSLKTLNAADGGIGVGGCAALKDSPALESLDMSG-NRIGGQGPEYLAGSKS 298
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL--NRC- 238
+K+L++ C VTD GI L +LT L++ G + L L A SL L++ NR
Sbjct: 299 IKTLRLCCCGVTDPGIQALAKNNQLTSLDVSGNYIGNDALRELVASPSLTELDVSCNRPH 358
Query: 239 ------QLSDDGCE-----------KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
Q ++G + + + + SLK FN+ E L T SL
Sbjct: 359 TPAPQHQKEEEGVQMAFALAEGMVGRATPLASLKADGNWFNDFAAEMLAFPTVKT--ASL 416
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
+L S IG G L LK L+L+ ++G G + L+G +L ++ + ++D +
Sbjct: 417 SLKSNLIGPAGAEKLAENPVLKSLDLTQNRIGDEGAQALAGSKSLTTLAVLNCLVTDTGV 476
Query: 342 RKLAGLSSLKSLNL------------------DARQITDTGLAALTSLTGLTHLDLFGAR 383
LA +LKSLNL A +IT G++AL LT L + G
Sbjct: 477 EALASNRTLKSLNLGNLVTETENEAEQAGYDETANEITVAGVSALAKNRSLTSLSVQGNL 536
Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
D L + L SL + +T A V + LT L++ N +L + ++ ++
Sbjct: 537 CGDDAVIALAKNRTLTSLNVAYTDMTPASVPELARNPVLTSLSVRWNYDLGPQGIQALAK 596
Query: 444 LTGLVSLNVSNSRITSAGLRHLK 466
L SL+ N+ G + L+
Sbjct: 597 SQSLTSLDARNTSKGEVGAKALE 619
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 1/144 (0%)
Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
LES+N+ I D + LAG SLK+LN I G AAL L LD+ G
Sbjct: 224 FPQLESLNVKGARIGDRGAQLLAGKLSLKTLNAADGGIGVGGCAALKDSPALESLDMSGN 283
Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
RI G YL K++++L +C G+TD G++ + + LT L++S N D EL++
Sbjct: 284 RIGGQGPEYLAGSKSIKTLRLCCCGVTDPGIQALAKNNQLTSLDVSGNYIGNDALRELVA 343
Query: 443 GLTGLVSLNVSNSRITSAGLRHLK 466
+ L L+VS +R + +H K
Sbjct: 344 SPS-LTELDVSCNRPHTPAPQHQK 366
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 85/199 (42%), Gaps = 11/199 (5%)
Query: 221 LDSLSALG-SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
LD L L +L +L+L C D G + ++ I L + G + LE
Sbjct: 179 LDDLKKLPPTLRHLDLGECA-PDCGAKSYAAIQYLTTVLPGTGTVP---------FPQLE 228
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
SLN+ IGD G L G +LK L +D +G G L LES+++S I
Sbjct: 229 SLNVKGARIGDRGAQLLAGKLSLKTLNAADGGIGVGGCAALKDSPALESLDMSGNRIGGQ 288
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
LAG S+K+L L +TD G+ AL LT LD+ G I + L +L
Sbjct: 289 GPEYLAGSKSIKTLRLCCCGVTDPGIQALAKNNQLTSLDVSGNYIGNDALRELVASPSLT 348
Query: 400 SLEICGGGLTDAGVKHIKD 418
L++ +H K+
Sbjct: 349 ELDVSCNRPHTPAPQHQKE 367
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 128/318 (40%), Gaps = 51/318 (16%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
+L LN++G + L+ SL LN + GC +L+ L++ N
Sbjct: 224 FPQLESLNVKGARIGDRGAQLLAGKLSLKTLNAADGGIGVGGCAALKDSPALESLDMSGN 283
Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-- 320
I + +L G ++++L L CG+ D G+ L L L++S +G+ LR L
Sbjct: 284 RIGGQGPEYLAGSKSIKTLRLCCCGVTDPGIQALAKNNQLTSLDVSGNYIGNDALRELVA 343
Query: 321 -SGLTNL------------------ESINLSFTGISDGSLRKLAGLSSLK---------- 351
LT L E + ++F +++G + + L+SLK
Sbjct: 344 SPSLTELDVSCNRPHTPAPQHQKEEEGVQMAF-ALAEGMVGRATPLASLKADGNWFNDFA 402
Query: 352 ------------SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
SL+L + I G L L LDL RI D GA L K+L
Sbjct: 403 AEMLAFPTVKTASLSLKSNLIGPAGAEKLAENPVLKSLDLTQNRIGDEGAQALAGSKSLT 462
Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
+L + +TD GV+ + +L LNL T+ E + + + IT
Sbjct: 463 TLAVLNCLVTDTGVEALASNRTLKSLNLGNLVTETENEAE-------QAGYDETANEITV 515
Query: 460 AGLRHLKPLKNLRSLTLE 477
AG+ L ++L SL+++
Sbjct: 516 AGVSALAKNRSLTSLSVQ 533
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 82/348 (23%), Positives = 147/348 (42%), Gaps = 46/348 (13%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
GV D + +A + + L S+D+SG+ + + L L +L LD + C + +H
Sbjct: 308 GVTDPGIQALA-KNNQLTSLDVSGNYIGNDALRELVASPSLTELDVS-CNRPHTPAPQHQ 365
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
+ + ++F A+GM A + +K D ++ +K SL++
Sbjct: 366 KEEEGV-QMAF-----ALAEGMVGRATPLASLKADGNWFNDFAAEMLAFP-TVKTASLSL 418
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
K N I + + L+ LKSL ++ +++ D G L G + LT L + C VT ++
Sbjct: 419 K-SNLIGPAGAEKLAENPVLKSLDLTQNRIGDEGAQALAGSKSLTTLAVLNCLVTDTGVE 477
Query: 223 SLSALGSLFYLNL-NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
+L++ +L LNL N +++ E+ G++E +E V
Sbjct: 478 ALASNRTLKSLNLGNLVTETENEAEQ-----------AGYDETANEITV----------- 515
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
G+ L +L L + G + L+ L S+N+++T ++ S+
Sbjct: 516 ---------AGVSALAKNRSLTSLSVQGNLCGDDAVIALAKNRTLTSLNVAYTDMTPASV 566
Query: 342 RKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSG 388
+LA L SL++ + G+ AL LT LD AR T G
Sbjct: 567 PELARNPVLTSLSVRWNYDLGPQGIQALAKSQSLTSLD---ARNTSKG 611
>gi|312372215|gb|EFR20228.1| hypothetical protein AND_20473 [Anopheles darlingi]
Length = 1701
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 107/438 (24%), Positives = 187/438 (42%), Gaps = 47/438 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLI--HLKDCSNLQ--SLDFNFCIQISDGGLEHLRGLSNLTSLS 112
SL ++ LSG+ +TD+G+I +KD LQ LD N ++ +G L L L
Sbjct: 313 PSLKTMQLSGNKITDAGMIGRAIKDLHTLQILKLDRNMISKLGEGSFVDLPSLKEL---- 368
Query: 113 FRRNNAITAQGMKAF--AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
+ +N IT AF + LV L+ R+H + ++ ++ + +
Sbjct: 369 YLNDNGITEIFHGAFHRTPSLKLVHLENNYLRRVHP-----ESFLQASGSGVEMMHLQQN 423
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ + L+SL L L L L+L + A +L G+L
Sbjct: 424 E----IGRVEELRSL--------------LDALPMLRFLDLSYNKLEAIPFGALRGHGTL 465
Query: 231 --FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
YLN NR ++ + + F + L+ L L N ++D+ + L L+ +++
Sbjct: 466 EQLYLNQNRIRMIER--DAFMAMPGLRELRLQNNSLSDQLPMPFWNLPGLKGIDISYNNF 523
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF---TGISDGSLRKLA 345
L G+ +L+ L++S + + LE++N+SF T I G+ R L
Sbjct: 524 RRMDPSLLVGVPSLRRLDISGNALSAIEPSAFGNTPMLETVNISFNELTHIHPGTFRDLH 583
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
+ L + + ++ GL L + A S + L + NLR L++ G
Sbjct: 584 HMFELDAGDNRLQEFI-PGLPLAVERINLQR-NKISALPQPSTGSKLWDLPNLRMLDVSG 641
Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQN--CNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
LT K L +L+L++N ++ D +L SGLT L LN+ ++R+ + R
Sbjct: 642 NELTRLPRAVFKPAPQLRVLSLARNQLQSIDDGSL---SGLTRLEVLNLQDNRVLALHER 698
Query: 464 HLKPLKNLRSLTLESCKV 481
PL+NLR L L+ ++
Sbjct: 699 CFNPLENLRELNLQGNRI 716
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 106/404 (26%), Positives = 170/404 (42%), Gaps = 45/404 (11%)
Query: 117 NAITAQGMKAFAG--LINLVKLDLERCTRIHGGLVN------------------LKGL-M 155
NA++A AF ++ V + T IH G + GL +
Sbjct: 545 NALSAIEPSAFGNTPMLETVNISFNELTHIHPGTFRDLHHMFELDAGDNRLQEFIPGLPL 604
Query: 156 KLESLNI---KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+E +N+ K S L L NL+ L +S +++T A K +L +L+L
Sbjct: 605 AVERINLQRNKISALPQPSTGSKLWDLPNLRMLDVSGNELTRLPRAVFKPAPQLRVLSLA 664
Query: 213 GCPVTAACLDSLSALGSLFYLNL--NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
+ + SLS L L LNL NR + C F+ + +L+ LNL N I E LV
Sbjct: 665 RNQLQSIDDGSLSGLTRLEVLNLQDNRVLALHERC--FNPLENLRELNLQGNRI--EVLV 720
Query: 271 H--LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
L G LE + I + +L+ L+LS Q+ LSGL L S
Sbjct: 721 DNLLDGNALLEQFDASRNSIVEISAKAFRNSRSLQTLDLSSNQLHELP-ESLSGLAELRS 779
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
++LSF +++ S L +L+ L ++ +L +L L + DL +T
Sbjct: 780 LDLSFNQLTELSPNLLVSWRNLEELKASNNKVNQLHQGSLRNLPLLQYFDLSSNELTQLE 839
Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
LRN L+ L + +T+ + +DL +L ++L QN NL + +V
Sbjct: 840 HGSLRNLPELQELVLADNRITELKERVFEDLPNLQAVHLQQN-NLRYISPYSFYRSPSIV 898
Query: 449 SLNVSNSRITS---AGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
LN+S ++ S GLR ++ LE +TAN I+++
Sbjct: 899 YLNLSANQFRSLDNVGLRSIR--------NLEVLDLTANGIRKI 934
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 99/424 (23%), Positives = 176/424 (41%), Gaps = 47/424 (11%)
Query: 114 RRNNAITAQG-----MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC--- 165
R+ A+T Q + F+GL L ++++ + I +GL+ LE++++
Sbjct: 218 RKLEAVTIQSEHLKRLPDFSGLSKLRYINVQSGSLIELAPPYFRGLISLETVHVTGSASL 277
Query: 166 ---------------------NCITDSDMKPLSGLTNLKSLQISCSKVTDSGI--AYLKG 202
N I+ ++ GL +LK++Q+S +K+TD+G+ +K
Sbjct: 278 TRLEAGLLNDLPKLTLIDLSENGISWVHLRTFVGLPSLKTMQLSGNKITDAGMIGRAIKD 337
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
L L +L L+ ++ S L SL L LN +++ F + SLK+++L N
Sbjct: 338 LHTLQILKLDRNMISKLGEGSFVDLPSLKELYLNDNGITEIFHGAFHRTPSLKLVHLENN 397
Query: 263 ---EITDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSSGL 317
+ E + G + +E ++L IG +E L L L+ L+LS ++ +
Sbjct: 398 YLRRVHPESFLQASG-SGVEMMHLQQNEIGRVEELRSLLDALPMLRFLDLSYNKLEAIPF 456
Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
L G LE + L+ I + L+ L L ++D +L GL +
Sbjct: 457 GALRGHGTLEQLYLNQNRIRMIERDAFMAMPGLRELRLQNNSLSDQLPMPFWNLPGLKGI 516
Query: 378 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
D+ + L +LR L+I G L+ + L +N+S N LT
Sbjct: 517 DISYNNFRRMDPSLLVGVPSLRRLDISGNALSAIEPSAFGNTPMLETVNISFN-ELTHIH 575
Query: 438 LELISGLTGLVSLNVSNSRITS--AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR--D 493
L + L+ ++R+ GL PL + + L+ K++A S+ D
Sbjct: 576 PGTFRDLHHMFELDAGDNRLQEFIPGL----PLA-VERINLQRNKISALPQPSTGSKLWD 630
Query: 494 LPNL 497
LPNL
Sbjct: 631 LPNL 634
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 93/213 (43%), Gaps = 27/213 (12%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
+DSLS L L + + L FS + L+ +N+ + + + +GL +LE
Sbjct: 210 PVDSLSGLRKLEAVTIQSEHLKR--LPDFSGLSKLRYINVQSGSLIELAPPYFRGLISLE 267
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
+ V++TG +L LE +GL L+ L L I+LS GIS
Sbjct: 268 T-------------VHVTGSASLTRLE--------AGL--LNDLPKLTLIDLSENGISWV 304
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGL--AALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
LR GL SLK++ L +ITD G+ A+ L L L L I+ G + +
Sbjct: 305 HLRTFVGLPSLKTMQLSGNKITDAGMIGRAIKDLHTLQILKLDRNMISKLGEGSFVDLPS 364
Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
L+ L + G+T+ SL L++L N
Sbjct: 365 LKELYLNDNGITEIFHGAFHRTPSLKLVHLENN 397
Score = 42.4 bits (98), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 82/340 (24%), Positives = 138/340 (40%), Gaps = 36/340 (10%)
Query: 130 LINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L NL LD+ TR+ + +++ SL I D LSGLT L+ L +
Sbjct: 631 LPNLRMLDVSGNELTRLPRAVFKPAPQLRVLSLARNQLQSIDDGS---LSGLTRLEVLNL 687
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
++V L+ L LNL+G + + L L + +R + + +
Sbjct: 688 QDNRVLALHERCFNPLENLRELNLQGNRIEVLVDNLLDGNALLEQFDASRNSIVEISAKA 747
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
F SL+ L+L N++ E L GL L SL+L + + L NL+ L+
Sbjct: 748 FRNSRSLQTLDLSSNQL-HELPESLSGLAELRSLDLSFNQLTELSPNLLVSWRNLEELKA 806
Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
S+ +V + GSLR L L+ +L + ++T +
Sbjct: 807 SNNKVNQ---------------------LHQGSLRNLP---LLQYFDLSSNELTQLEHGS 842
Query: 368 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427
L +L L L L RIT+ + NL+++ + L S+ LNL
Sbjct: 843 LRNLPELQELVLADNRITELKERVFEDLPNLQAVHLQQNNLRYISPYSFYRSPSIVYLNL 902
Query: 428 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 467
S N ++L+ + GL + +L V + +T+ G+R + P
Sbjct: 903 SAN---QFRSLDNV-GLRSIRNLEVLD--LTANGIRKITP 936
>gi|290992631|ref|XP_002678937.1| predicted protein [Naegleria gruberi]
gi|284092552|gb|EFC46193.1| predicted protein [Naegleria gruberi]
Length = 215
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 92/198 (46%), Gaps = 7/198 (3%)
Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
L + G E SK+ L LN+ N+I +L+ L L + N+ + I + L+ L
Sbjct: 2 LGNIGAEHISKLKQLTYLNIQNNQIGSTGAKYLRELKQLTNPNIHTNDIDSKRAEYLSEL 61
Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
L+ LE+ + S+G+ +LS + + ++ I ++ L L L L++ Q
Sbjct: 62 KQLQTLEIGYNNIESAGVEYLSSIEQFSHLGVAANEIVTEGVKWLGNLKQLTYLDISCNQ 121
Query: 360 ITDTG-------LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
+ G + LT + L +LD+ G I D GA L K L+ L + +++ G
Sbjct: 122 VFIIGDDINSEEVEILTGMQQLQYLDIGGNYIDDEGAKCLSKLKELKHLNVLRNAISEEG 181
Query: 413 VKHIKDLSSLTLLNLSQN 430
+HI L LT LN++ N
Sbjct: 182 AQHISKLEKLTFLNIANN 199
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 99/203 (48%), Gaps = 9/203 (4%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
G EH+ L LT L+ + NN I + G K L L ++ L L +L
Sbjct: 6 GAEHISKLKQLTYLNIQ-NNQIGSTGAKYLRELKQLTNPNIHTNDIDSKRAEYLSELKQL 64
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE----- 212
++L I + N I + ++ LS + L ++ +++ G+ +L L++LT L++
Sbjct: 65 QTLEIGYNN-IESAGVEYLSSIEQFSHLGVAANEIVTEGVKWLGNLKQLTYLDISCNQVF 123
Query: 213 --GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
G + + ++ L+ + L YL++ + D+G + SK+ LK LN+ N I++E
Sbjct: 124 IIGDDINSEEVEILTGMQQLQYLDIGGNYIDDEGAKCLSKLKELKHLNVLRNAISEEGAQ 183
Query: 271 HLKGLTNLESLNLDSCGIGDEGL 293
H+ L L LN+ + IG +G+
Sbjct: 184 HISKLEKLTFLNIANNDIGYQGI 206
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 8/196 (4%)
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
+G+ G +++ L L L + + Q+GS+G ++L L L + N+ I L+ L
Sbjct: 2 LGNIGAEHISKLKQLTYLNIQNNQIGSTGAKYLRELKQLTNPNIHTNDIDSKRAEYLSEL 61
Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE----- 402
L++L + I G+ L+S+ +HL + I G +L N K L L+
Sbjct: 62 KQLQTLEIGYNNIESAGVEYLSSIEQFSHLGVAANEIVTEGVKWLGNLKQLTYLDISCNQ 121
Query: 403 --ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
I G + V+ + + L L++ N + D+ + +S L L LNV + I+
Sbjct: 122 VFIIGDDINSEEVEILTGMQQLQYLDIGGNY-IDDEGAKCLSKLKELKHLNVLRNAISEE 180
Query: 461 GLRHLKPLKNLRSLTL 476
G +H+ L+ L L +
Sbjct: 181 GAQHISKLEKLTFLNI 196
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 93/211 (44%), Gaps = 8/211 (3%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
G ++ L++LT LN++ + + L L L N++ + E S++ L+
Sbjct: 6 GAEHISKLKQLTYLNIQNNQIGSTGAKYLRELKQLTNPNIHTNDIDSKRAEYLSELKQLQ 65
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV--- 312
L +G+N I + +L + L + + I EG+ L L L L++S QV
Sbjct: 66 TLEIGYNNIESAGVEYLSSIEQFSHLGVAANEIVTEGVKWLGNLKQLTYLDISCNQVFII 125
Query: 313 ----GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368
S + L+G+ L+ +++ I D + L+ L LK LN+ I++ G +
Sbjct: 126 GDDINSEEVEILTGMQQLQYLDIGGNYIDDEGAKCLSKLKELKHLNVLRNAISEEGAQHI 185
Query: 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
+ L LT L++ I G YL K L
Sbjct: 186 SKLEKLTFLNIANNDIGYQG-IYLSKMKQLH 215
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 89/199 (44%), Gaps = 7/199 (3%)
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
+ +S L L YLN+ Q+ G + ++ L N+ N+I + +L L L++L
Sbjct: 8 EHISKLKQLTYLNIQNNQIGSTGAKYLRELKQLTNPNIHTNDIDSKRAEYLSELKQLQTL 67
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS-----FTG- 335
+ I G+ L+ + L ++ ++ + G++ L L L +++S G
Sbjct: 68 EIGYNNIESAGVEYLSSIEQFSHLGVAANEIVTEGVKWLGNLKQLTYLDISCNQVFIIGD 127
Query: 336 -ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
I+ + L G+ L+ L++ I D G L+ L L HL++ I++ GA ++
Sbjct: 128 DINSEEVEILTGMQQLQYLDIGGNYIDDEGAKCLSKLKELKHLNVLRNAISEEGAQHISK 187
Query: 395 FKNLRSLEICGGGLTDAGV 413
+ L L I + G+
Sbjct: 188 LEKLTFLNIANNDIGYQGI 206
>gi|149178243|ref|ZP_01856836.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148842892|gb|EDL57262.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 254
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
+L +ITDE L L GL+ ++SLNL + GL L L L L L T+V +
Sbjct: 58 AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT-DTGLAALTSLTGL 374
GL+HL L NLE +NL T I+D L +L+ L LK L + ++T GLA +TGL
Sbjct: 118 GLKHLQQLPNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQEQITGL 177
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 64/120 (53%)
Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
+ +LS I+D +L+ LAGLS + SLNL ++T GLA L L LTHL L ++ D+
Sbjct: 58 AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117
Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
G +L+ NL L + G +TDAG+ + L L L + Q L L +TGL
Sbjct: 118 GLKHLQQLPNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQEQITGL 177
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 71/130 (54%), Gaps = 1/130 (0%)
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
LSD ++ L+ L+GL+ ++S+NL T ++ L +L L +L L+L+ ++ D
Sbjct: 58 AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117
Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT-DAGVKHIKDLSSL 422
GL L L L +L+L+G ITD+G + L + K L+ L + +T AG+ + ++ L
Sbjct: 118 GLKHLQQLPNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQEQITGL 177
Query: 423 TLLNLSQNCN 432
++ L +
Sbjct: 178 EVIGLPEEPK 187
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 2/126 (1%)
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
+ +L I DE L L GL + L L T+V S+GL L L L ++L T ++D
Sbjct: 58 AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117
Query: 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399
L+ L L +L+ LNL +ITD GL+ L+SL L L ++ ++T L+ +
Sbjct: 118 GLKHLQQLPNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQE--QIT 175
Query: 400 SLEICG 405
LE+ G
Sbjct: 176 GLEVIG 181
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 70/150 (46%), Gaps = 25/150 (16%)
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+ +S K+TD + L GL K+ LNL G VT+A L L L +L +L+L + +++D
Sbjct: 58 AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117
Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
G L HL+ L NLE LNL I D GL L+ L LK
Sbjct: 118 G------------------------LKHLQQLPNLEYLNLYGTEITDAGLSQLSSLKKLK 153
Query: 304 CLELSDTQVG-SSGLRHLSGLTNLESINLS 332
L + T+V +GL +T LE I L
Sbjct: 154 RLYVWQTKVTRPAGLALQEQITGLEVIGLP 183
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
ITD +K L+GL+ + SL + ++VT +G+A L+ L+ LT L+LE V A L L L
Sbjct: 66 ITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDAGLKHLQQL 125
Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK-GLTNLESLNL 283
+L YLNL +++D G + S + LK L + ++T + L+ +T LE + L
Sbjct: 126 PNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQEQITGLEVIGL 182
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 25/131 (19%)
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
+ +L ++ITD L L L+ + L+L G +T +G A L++ K L L + + DA
Sbjct: 58 AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117
Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 471
G+KH++ L +L LNL + IT AGL L LK L
Sbjct: 118 GLKHLQQLPNLEYLNLY-------------------------GTEITDAGLSQLSSLKKL 152
Query: 472 RSLTLESCKVT 482
+ L + KVT
Sbjct: 153 KRLYVWQTKVT 163
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 84/180 (46%), Gaps = 20/180 (11%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
P +IA+ GS L +L+ +D HL D +I+D L+
Sbjct: 29 PATEQAKAKIIAAGGSVL---ELAQNDDRLEIAFHLSDQ------------KITDETLKT 73
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L GLS + SL+ R +T+ G+ L L L LE+ GL +L+ L LE LN
Sbjct: 74 LAGLSKVDSLNLR-GTEVTSAGLAQLQHLKALTHLHLEKTKVNDAGLKHLQQLPNLEYLN 132
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVT-DSGIAYLKGLQKLTLLNL--EGCPVTA 218
+ + ITD+ + LS L LK L + +KVT +G+A + + L ++ L E PV A
Sbjct: 133 L-YGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQEQITGLEVIGLPEEPKPVAA 191
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 430 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
+ +TD+TL+ ++GL+ + SLN+ + +TSAGL L+ LK L L LE KV +K L
Sbjct: 63 DQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDAGLKHL 122
Query: 490 QSRDLPNL 497
Q LPNL
Sbjct: 123 QQ--LPNL 128
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 382 ARITDSGAAYLRNFKNLRSLEIC----GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437
A+I +G + L +N LEI +TD +K + LS + LNL + +T
Sbjct: 36 AKIIAAGGSVLELAQNDDRLEIAFHLSDQKITDETLKTLAGLSKVDSLNL-RGTEVTSAG 94
Query: 438 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
L + L L L++ +++ AGL+HL+ L NL L L ++T
Sbjct: 95 LAQLQHLKALTHLHLEKTKVNDAGLKHLQQLPNLEYLNLYGTEIT 139
>gi|440906486|gb|ELR56740.1| F-box/LRR-repeat protein 13 [Bos grunniens mutus]
Length = 763
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 120/454 (26%), Positives = 213/454 (46%), Gaps = 56/454 (12%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFC 91
LQ+L + P + D+ M I+ +L ++LS + +T+ + L + NLQ+L +C
Sbjct: 338 LQELNVSDCPTLTDESMRYISESCPGVLYLNLSNTIITNRTMRLLPRYFYNLQNLSLAYC 397
Query: 92 IQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFA----GLINLVKLDL----ER 140
+ +D GL++L G L L I+ QG + A G+++L D+ +
Sbjct: 398 RKFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRNIANSCSGIMHLTINDMPTLTDN 457
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAY 199
C ++ ++ ++ S+ + I+DS K LSG ++K ++ +K +TD+
Sbjct: 458 CVKV------VEKCHRISSVVLIGAPHISDSAFKALSG-CDIKKIRFEGNKRITDACFKL 510
Query: 200 L-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV 256
+ K ++ + + C +T L SLS L L LNL C ++ D G ++F
Sbjct: 511 IDKSYPNISHIYMVDCKGITDGSLKSLSPLKHLTVLNLANCVRIGDTGLKQF-------- 562
Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC-NLKCLELSDTQ-VG 313
+ T + LNL +C +GD + L+ C NL L L + + +
Sbjct: 563 -------------LDGPASTKIRELNLSNCIHLGDASMAKLSERCYNLNYLNLRNCEHLT 609
Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALT--S 370
G+ ++ + +L S++LS T IS+ L L+ LK L++ + +ITD G+ S
Sbjct: 610 DLGVEFIANIFSLVSVDLSGTDISNEGLMTLSRHRKLKELSVSECDKITDFGIQVFCKGS 669
Query: 371 LTGLTHLDL-FGARITDSGAAYLRNF-KNLRSLEICG-GGLTDAGVKHI-KDLSSLTLLN 426
LT L HLD+ + +++D L + NL SL + G +TD+ ++ + L +L+
Sbjct: 670 LT-LEHLDVSYCPQLSDIIIKALAIYCINLTSLSVAGCPKITDSAMEMLSAKCHYLHILD 728
Query: 427 LSQNCNLTDKTLE-LISGLTGLVSLNVSNSRITS 459
+S LTD+ LE L G L L + R+ S
Sbjct: 729 VSGCILLTDQMLENLEMGCRQLRILKMQYCRLIS 762
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 98/406 (24%), Positives = 175/406 (43%), Gaps = 71/406 (17%)
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG------------ 178
+N+++L+ C L ++ L+ LN+ C +TD M+ +S
Sbjct: 312 LNVLRLNFRGCVLRLKTLRSVSFCKNLQELNVSDCPTLTDESMRYISESCPGVLYLNLSN 371
Query: 179 --------------LTNLKSLQIS-CSKVTDSGIAYL---KGLQKLTLLNLEGC-PVTAA 219
NL++L ++ C K TD G+ YL G KL L+L GC ++
Sbjct: 372 TIITNRTMRLLPRYFYNLQNLSLAYCRKFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQ 431
Query: 220 CLDSLS-ALGSLFYLNLNRCQLSDDGC----EKFSKIGSL-------------------- 254
+++ + + +L +N D C EK +I S+
Sbjct: 432 GFRNIANSCSGIMHLTINDMPTLTDNCVKVVEKCHRISSVVLIGAPHISDSAFKALSGCD 491
Query: 255 --KVLNLGFNEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD- 309
K+ G ITD C + K N+ + + C GI D L +L+ L +L L L++
Sbjct: 492 IKKIRFEGNKRITDACFKLIDKSYPNISHIYMVDCKGITDGSLKSLSPLKHLTVLNLANC 551
Query: 310 TQVGSSGLRHL---SGLTNLESINLS-FTGISDGSLRKLAG-LSSLKSLNL-DARQITDT 363
++G +GL+ T + +NLS + D S+ KL+ +L LNL + +TD
Sbjct: 552 VRIGDTGLKQFLDGPASTKIRELNLSNCIHLGDASMAKLSERCYNLNYLNLRNCEHLTDL 611
Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVK-HIKDLSS 421
G+ + ++ L +DL G I++ G L + L+ L + +TD G++ K +
Sbjct: 612 GVEFIANIFSLVSVDLSGTDISNEGLMTLSRHRKLKELSVSECDKITDFGIQVFCKGSLT 671
Query: 422 LTLLNLSQNCNLTDKTLELISGL-TGLVSLNVSN-SRITSAGLRHL 465
L L++S L+D ++ ++ L SL+V+ +IT + + L
Sbjct: 672 LEHLDVSYCPQLSDIIIKALAIYCINLTSLSVAGCPKITDSAMEML 717
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 124/481 (25%), Positives = 204/481 (42%), Gaps = 100/481 (20%)
Query: 25 LEAFRDCALQDLCL-GQYPGVNDKWMDVIASQGSSLLSVDLSGSD--VTDSGLIHLKDCS 81
L+ F +L+DL + GQ VN W+ ++ GS +D S +TD ++ +
Sbjct: 255 LQIFSYLSLRDLVICGQ---VNRSWL-LMTQMGSLWNGIDFSAVKNIITDKYIVSILQRW 310
Query: 82 NLQSLDFNF--CIQISDGGLEHLRGLS---NLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L L NF C+ L+ LR +S NL L+ +T + M+ +
Sbjct: 311 RLNVLRLNFRGCVL----RLKTLRSVSFCKNLQELNVSDCPTLTDESMRYIS-------- 358
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTD 194
E C G++ L N IT+ M+ L NL++L ++ C K TD
Sbjct: 359 --ESCP----------GVLYLNLSN----TIITNRTMRLLPRYFYNLQNLSLAYCRKFTD 402
Query: 195 SGIAYLK---GLQKLTLLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGC---- 245
G+ YL G KL L+L GC ++ +++ + + +L +N D C
Sbjct: 403 KGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRNIANSCSGIMHLTINDMPTLTDNCVKVV 462
Query: 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305
EK +I S V+ +G I+D L G D I EG +T C
Sbjct: 463 EKCHRISS--VVLIGAPHISDSAFKALSGC--------DIKKIRFEGNKRITD----ACF 508
Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTG 364
+L D + ++++ ++ GI+DGSL+ L+ L L LNL + +I DTG
Sbjct: 509 KLID--------KSYPNISHIYMVDCK--GITDGSLKSLSPLKHLTVLNLANCVRIGDTG 558
Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKD-LSSL 422
L + D A+ +R L + L DA + + + +L
Sbjct: 559 LK----------------QFLDGPAS-----TKIRELNLSNCIHLGDASMAKLSERCYNL 597
Query: 423 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC-KV 481
LNL +LTD +E I+ + LVS+++S + I++ GL L + L+ L++ C K+
Sbjct: 598 NYLNLRNCEHLTDLGVEFIANIFSLVSVDLSGTDISNEGLMTLSRHRKLKELSVSECDKI 657
Query: 482 T 482
T
Sbjct: 658 T 658
>gi|224091068|ref|XP_002309168.1| predicted protein [Populus trichocarpa]
gi|222855144|gb|EEE92691.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 145/527 (27%), Positives = 235/527 (44%), Gaps = 92/527 (17%)
Query: 38 LGQYPGVN-----------DKWMDVIASQ-GSSLLSVDLSGS-DVTDSGLIHLK-DCSNL 83
L +YP VN + + VI++ SL S+DLS S + +GL+ L +C NL
Sbjct: 70 LNRYPNVNHLDLSLCLRLNNSSLTVISNICKDSLNSIDLSRSRSFSYNGLMSLALNCKNL 129
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA--------------- 128
S+D + ++ D + NL L R IT G+ A
Sbjct: 130 VSIDLSNATELRDAAAAAVAEAKNLERLWLVRCKLITDTGIGCIAVGCKKLRLISLKWCI 189
Query: 129 -------GLI-----NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
GLI + LDL + L ++ L LE + ++ C I D + L
Sbjct: 190 GVSDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQYLEHIALEGCFGIDDDSLAAL 249
Query: 177 S-GLTNLKSLQI-SCSKVTDSGIAYL----KGLQKLTL---------------------- 208
G +LK+L + SC ++ G++ L +GLQ+LTL
Sbjct: 250 KHGCKSLKALDMSSCQNISHVGLSSLTSGAEGLQQLTLGYGSPVTLALANSLRSLSILQS 309
Query: 209 LNLEGCPVTAACLDSLSALG----SLFYLNLNRC-QLSDDGCEKF-SKIGSLKVLNLG-F 261
+ L+GCPVT+A L A+G SL L+L++C ++D+G +K LK L++
Sbjct: 310 VKLDGCPVTSA---GLKAIGNWCISLSELSLSKCLGVTDEGLSSLVTKHKDLKKLDITCC 366
Query: 262 NEITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCN-LKCLELSDTQVGSSGLR 318
+ITD + ++ TNL SL ++SC + E V + C L+ L+L+D ++ GL+
Sbjct: 367 RKITDVSIAYITSSCTNLTSLRMESCTLVPSEAFVFIGQQCQFLEELDLTDNEIDDKGLK 426
Query: 319 HLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQ---ITDTGLAALTS-LTG 373
+S + L S+ + ISD L + G+ K +LD + ITD G+ A+ +G
Sbjct: 427 SISKCSKLSSLKIGICLNISDKGLSHI-GMKCSKLADLDLYRSAGITDLGILAICRGCSG 485
Query: 374 LTHLDL-FGARITDSGAAYLRNFKNLRSLEICGGGL-TDAGVKHIK-DLSSLTLLNLSQN 430
L +++ + ITDS L L + E G L T +G+ I L L++ +
Sbjct: 486 LEMINMSYCMDITDSSLLALSKCSRLNTFESRGCPLITSSGLAAIAVGCKQLNKLDIKKC 545
Query: 431 CNLTDKT-LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
N+ D L+L L + +S S +T GL L + L+S+T+
Sbjct: 546 HNIGDAVMLQLARFSQNLRQITLSYSSVTDVGLLALASISCLQSMTV 592
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 110/381 (28%), Positives = 170/381 (44%), Gaps = 48/381 (12%)
Query: 69 VTDSGLIHLKD-CSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKA 126
+ D L LK C +L++LD + C IS GL L G L L+ + +T +
Sbjct: 241 IDDDSLAALKHGCKSLKALDMSSCQNISHVGLSSLTSGAEGLQQLTLGYGSPVTLALANS 300
Query: 127 FAGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKS 184
L L + L+ C GL + + L L++ C +TD + L + +LK
Sbjct: 301 LRSLSILQSVKLDGCPVTSAGLKAIGNWCISLSELSLSKCLGVTDEGLSSLVTKHKDLKK 360
Query: 185 LQISC-SKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L I+C K+TD IAY+ LT L +E C + + F +CQ
Sbjct: 361 LDITCCRKITDVSIAYITSSCTNLTSLRMESCTLVPS---------EAFVFIGQQCQF-- 409
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 301
L+ L+L NEI D+ L + + L SL + C I D+GL ++
Sbjct: 410 -----------LEELDLTDNEIDDKGLKSISKCSKLSSLKIGICLNISDKGLSHI----G 454
Query: 302 LKCLELSDTQV-GSSGLRHL------SGLTNLESINLSF-TGISDGSLRKLAGLSSLKSL 353
+KC +L+D + S+G+ L G + LE IN+S+ I+D SL L+ S L +
Sbjct: 455 MKCSKLADLDLYRSAGITDLGILAICRGCSGLEMINMSYCMDITDSSLLALSKCSRLNTF 514
Query: 354 -NLDARQITDTGLAAL-TSLTGLTHLDLFGAR-ITDSGAAYLRNF-KNLRSLEICGGGLT 409
+ IT +GLAA+ L LD+ I D+ L F +NLR + + +T
Sbjct: 515 ESRGCPLITSSGLAAIAVGCKQLNKLDIKKCHNIGDAVMLQLARFSQNLRQITLSYSSVT 574
Query: 410 DAG---VKHIKDLSSLTLLNL 427
D G + I L S+T+L+L
Sbjct: 575 DVGLLALASISCLQSMTVLHL 595
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 93/195 (47%), Gaps = 33/195 (16%)
Query: 52 IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTS 110
I Q L +DL+ +++ D GL + CS L SL C+ ISD GL H+ S L
Sbjct: 403 IGQQCQFLEELDLTDNEIDDKGLKSISKCSKLSSLKIGICLNISDKGLSHIGMKCSKLAD 462
Query: 111 LSFRRNNAITAQGMKAFA------GLINLVK---------LDLERCTRIH---------- 145
L R+ IT G+ A +IN+ L L +C+R++
Sbjct: 463 LDLYRSAGITDLGILAICRGCSGLEMINMSYCMDITDSSLLALSKCSRLNTFESRGCPLI 522
Query: 146 --GGLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLT-NLKSLQISCSKVTDSG---IA 198
GL + G +L L+IK C+ I D+ M L+ + NL+ + +S S VTD G +A
Sbjct: 523 TSSGLAAIAVGCKQLNKLDIKKCHNIGDAVMLQLARFSQNLRQITLSYSSVTDVGLLALA 582
Query: 199 YLKGLQKLTLLNLEG 213
+ LQ +T+L+L+G
Sbjct: 583 SISCLQSMTVLHLKG 597
>gi|357619268|gb|EHJ71912.1| hypothetical protein KGM_06037 [Danaus plexippus]
Length = 453
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 117/240 (48%), Gaps = 10/240 (4%)
Query: 9 QIFNELVYSRC--LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
Q+ EL + C +TE L A + L L + D+ + +A SL L
Sbjct: 192 QVLFELELTGCNEITEAGLWACLTPRIVSLTLTDCINIADEAVGAVAQLLPSLYEFSLQA 251
Query: 67 SDVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQG 123
VTD+ L + K ++L L + C ++++ G+ ++ L NLT LS + +T +G
Sbjct: 252 YHVTDAALGYFSPKQSASLSILRLHSCWELTNHGVVNIVHSLPNLTVLSLSGCSKVTDEG 311
Query: 124 MKAFA-GLINLVKLDLERCTRIHGGLVNLKG--LMKLESLNIKWCNCITDSDMKPLSGLT 180
++ A L L LDL C R+ + L +LE L + C ITD + +S +
Sbjct: 312 VELLAENLPRLRSLDLSWCPRVTDNALEYIACDLNQLEELTLDRCVHITDIGVGYISTMQ 371
Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC 238
+L +L + CS+V D G+ +L G++ L LL+L GCP +T+ L SL L L L L C
Sbjct: 372 SLAALFLRWCSQVRDFGVQHLCGMRSLQLLSLAGCPLLTSGGLSSLIQLRQLRELELTNC 431
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 151/347 (43%), Gaps = 68/347 (19%)
Query: 169 TDSDMK------PLSGLTNLKSLQISCSKVTDSGI-AYLKGLQKLTLLNLEGC-PVTAAC 220
TD D+ PLS ++ ++ + +TD G+ + L LQ L L L GC +T A
Sbjct: 151 TDDDINELIKQFPLSA-HHIHAIGLKGCTITDRGLESILDHLQVLFELELTGCNEITEAG 209
Query: 221 LDSLSALGSLFYLNLNRC-QLSDDGCEKFSKI-GSLKVLNLGFNEITDECLVHL--KGLT 276
L + + L L C ++D+ +++ SL +L +TD L + K
Sbjct: 210 LWA-CLTPRIVSLTLTDCINIADEAVGAVAQLLPSLYEFSLQAYHVTDAALGYFSPKQSA 268
Query: 277 NLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLS 332
+L L L SC + + G+VN+ L NL L LS ++V G+ L+ L L S++LS
Sbjct: 269 SLSILRLHSCWELTNHGVVNIVHSLPNLTVLSLSGCSKVTDEGVELLAENLPRLRSLDLS 328
Query: 333 F-TGISDGSLRKLA-GLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
+ ++D +L +A L+ L+ L LD ITD G+ ++++ L A
Sbjct: 329 WCPRVTDNALEYIACDLNQLEELTLDRCVHITDIGVGYISTMQSL-------------AA 375
Query: 390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 449
+LR +R D GV+H+ + SL LL+L+ C L
Sbjct: 376 LFLRWCSQVR----------DFGVQHLCGMRSLQLLSLA-GCPL---------------- 408
Query: 450 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 496
+TS GL L L+ LR L L +C + ++ LP
Sbjct: 409 -------LTSGGLSSLIQLRQLRELELTNCPGASPELFDYLHEHLPR 448
>gi|85679222|gb|ABC72027.1| InlA [Listeria monocytogenes]
Length = 791
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 115/374 (30%), Positives = 172/374 (45%), Gaps = 54/374 (14%)
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
+ LKD + L + N QI+D + L L+NLT L+ NN IT + A L NL
Sbjct: 112 ITPLKDLTKLVDIVMNNN-QITD--ISPLANLTNLTGLTLF-NNQIT--DIDALKNLTNL 165
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+L++ T + L GL L+ L+ N +TD +KPL+ LT L+ L IS +KV+
Sbjct: 166 NRLEITGNTI--SDISVLSGLTSLQQLSF--GNQVTD--LKPLANLTTLERLDISSNKVS 219
Query: 194 D-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252
D S +A L L++L N + +T L L +L L+LN QL D G + +
Sbjct: 220 DISVLAKLTNLERLIATNNQISDITP-----LGILTNLDELSLNGNQLKDIGT--LASLT 272
Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
+L L++ N+I++ L L GLT L L L I + + + GL L LEL + Q+
Sbjct: 273 NLTSLDVANNQISN--LAPLSGLTKLTELELGYNQISN--ISPIEGLTALTSLELHENQL 328
Query: 313 GSSGLRHLSGLTNLESINLSFTGISD----GSLRK----------------LAGLSSLKS 352
+ +S L NL + L F ISD SL K LA L+++
Sbjct: 329 --EDISPISNLKNLTYLALYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINW 386
Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGG 406
L+ QI+D L L +LT ++ L L T+ Y N KN+ I
Sbjct: 387 LSAAHNQISD--LTPLANLTRISELGLNDQAWTNPPVNYKTNVSIPNTVKNVTGALIAPA 444
Query: 407 GLTDAGVKHIKDLS 420
++D G D++
Sbjct: 445 TISDGGSYAEPDIT 458
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 125/253 (49%), Gaps = 44/253 (17%)
Query: 243 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
DG E + +L +N GFN++TD + LK LT L + +++ I D + L L NL
Sbjct: 91 DGLEY---LNNLTQINFGFNQLTD--ITPLKDLTKLVDIVMNNNQITD--ISPLANLTNL 143
Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
L L + Q+ + + L LTNL + ++ ISD S+ L+GL+SL+ L+ Q+TD
Sbjct: 144 TGLTLFNNQI--TDIDALKNLTNLNRLEITGNTISDISV--LSGLTSLQQLSF-GNQVTD 198
Query: 363 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 402
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 199 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLERLIATNNQISDITPLGILTNLDELS 256
Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
+ G L D G + L++LT L+++ N L +SGLT L L + ++I+
Sbjct: 257 LNGNQLKDIGT--LASLTNLTSLDVANNQ---ISNLAPLSGLTKLTELELGYNQIS---- 307
Query: 463 RHLKPLKNLRSLT 475
++ P++ L +LT
Sbjct: 308 -NISPIEGLTALT 319
>gi|260788598|ref|XP_002589336.1| hypothetical protein BRAFLDRAFT_77788 [Branchiostoma floridae]
gi|229274513|gb|EEN45347.1| hypothetical protein BRAFLDRAFT_77788 [Branchiostoma floridae]
Length = 1470
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 130/261 (49%), Gaps = 25/261 (9%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYL-KGL---QKLTLLNLEGCPVTAACLDSLSALGSLF 231
+ L+ L+ + +S + ++D + L +GL QKL +NL ++ D L L SL
Sbjct: 1116 IQHLSLLEEIDLSHNVISDEAVPSLAEGLGSCQKLKKVNLSHNKLSGRG-DFLPPLPSLE 1174
Query: 232 YLNLNRCQLSDDGCEKFSK-IGS---LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
++L+ +SD+ ++ +GS LK +NL N+++D L L NLE ++L
Sbjct: 1175 EIDLSYNAISDEAVPGLAEGLGSCQNLKKVNLSHNKLSDRGDF-LPPLPNLEEIDLSHNI 1233
Query: 288 IGDEGLVNLTGLC----NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
I DE + L G NLK ++LS ++ G L L NLE I+LS+ I D +
Sbjct: 1234 ISDEAVPGLAGSLGSCQNLKKVDLSHNKLSDRG-HFLPPLPNLEEIDLSYNAIGDEAEPG 1292
Query: 344 LA-GLSS---LKSLNLDARQITDTG--LAALTSLTGLTHLDLFGARITDSG----AAYLR 393
LA GL S LK +NL +++D G AA L LTH+D++ +D AA+L+
Sbjct: 1293 LAEGLGSCQKLKKVNLSHNKLSDVGELTAAFIDLPFLTHVDIYNNSFSDESLPTIAAWLK 1352
Query: 394 NFKNLRSLEICGGGLTDAGVK 414
+ + + G + GV+
Sbjct: 1353 VRTEVERVWMRGNRFSAEGVR 1373
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 89/320 (27%), Positives = 147/320 (45%), Gaps = 33/320 (10%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSG---IAYLKG----LQKLTLLNLEGCPVTAACLDSLS 225
+K L L NL+ L + S + G I+ L G L+KL L + + +
Sbjct: 1058 LKFLPQLPNLQELALCVSCQGEEGAEHISQLYGVRHVLKKLKLKDWSLDSIMRLSTQMIQ 1117
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSK-IGS---LKVLNLGFNEITDECLVHLKGLTNLESL 281
L L ++L+ +SD+ ++ +GS LK +NL N+++ L L +LE +
Sbjct: 1118 HLSLLEEIDLSHNVISDEAVPSLAEGLGSCQKLKKVNLSHNKLSGRGDF-LPPLPSLEEI 1176
Query: 282 NLDSCGIGDE---GLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
+L I DE GL G C NLK + LS ++ G L L NLE I+LS IS
Sbjct: 1177 DLSYNAISDEAVPGLAEGLGSCQNLKKVNLSHNKLSDRG-DFLPPLPNLEEIDLSHNIIS 1235
Query: 338 DGSLRKLAG----LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG----A 389
D ++ LAG +LK ++L +++D G L L L +DL I D A
Sbjct: 1236 DEAVPGLAGSLGSCQNLKKVDLSHNKLSDRG-HFLPPLPNLEEIDLSYNAIGDEAEPGLA 1294
Query: 390 AYLRNFKNLRSLEICGGGLTDAG--VKHIKDLSSLTLLNLSQNCNLTDKTLELISGL--- 444
L + + L+ + + L+D G DL LT +++ N + +D++L I+
Sbjct: 1295 EGLGSCQKLKKVNLSHNKLSDVGELTAAFIDLPFLTHVDIYNN-SFSDESLPTIAAWLKV 1353
Query: 445 -TGLVSLNVSNSRITSAGLR 463
T + + + +R ++ G+R
Sbjct: 1354 RTEVERVWMRGNRFSAEGVR 1373
>gi|158300725|ref|XP_320584.4| AGAP011947-PA [Anopheles gambiae str. PEST]
gi|157013299|gb|EAA00258.4| AGAP011947-PA [Anopheles gambiae str. PEST]
Length = 1233
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 111/450 (24%), Positives = 196/450 (43%), Gaps = 52/450 (11%)
Query: 48 WMDVIASQG-SSLLSVDLSGSDVTDSGLI--HLKDCSNLQSL--DFNFCIQISDGGLEHL 102
W+ + G +L ++ LSG+ +TD+G+I +KD NLQ L D N ++S+G L
Sbjct: 226 WVHLRTFVGLPALKTLQLSGNKITDAGMIGRAVKDIHNLQVLRMDRNMISKLSEGSFVDL 285
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF--AGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
L L + +N IT AF + LV L+ R+H + ++
Sbjct: 286 PSLKEL----YLNDNGITEIFHGAFHRTPSLKLVHLENNYLRRVHP-----ESFLQASGS 336
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
++ + + + + L+SL L L L L+L + A
Sbjct: 337 GVEMMHLQQNE----IGRVEELRSL--------------LDALPMLRFLDLSHNKLEAIP 378
Query: 221 LDSLSALGSL--FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
+L G+L YLN NR ++ + + F + L+ L L N + D+ + L L
Sbjct: 379 FGALRGHGTLEQLYLNQNRIRMIER--DAFMAMPGLRELRLQNNSLHDQLPMPFWNLPGL 436
Query: 279 ESLNL--DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
+ +++ +S D L L G+ +L+ L++S + + LE++N+SF +
Sbjct: 437 KGIDISYNSFRRMDPNL--LVGVPSLRRLDISGNTLSVIDAGAFTHTPMLETVNISFNEL 494
Query: 337 S---DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
S + R L + L + N ++ GL L H ++ + A+ L
Sbjct: 495 SLIHSATFRDLNHMFELDAGNNKLQEFI-PGLPVAVERVNL-HGNMITQLPPPTTASQLW 552
Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN--CNLTDKTLELISGLTGLVSLN 451
+ NLR L+I LT K L +L+L++N ++ D +L SGL+ L LN
Sbjct: 553 DLPNLRMLDISANQLTRLPRAVFKPTPQLRVLSLARNQLQSVDDGSL---SGLSRLEILN 609
Query: 452 VSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
+ ++R+ + R PL+NLR L L+ ++
Sbjct: 610 LQDNRVLALHERCFSPLENLRELNLQGNRI 639
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 133/320 (41%), Gaps = 39/320 (12%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L L NL+ L IS +++T A K +L +L+L + + SLS L L LNL
Sbjct: 551 LWDLPNLRMLDISANQLTRLPRAVFKPTPQLRVLSLARNQLQSVDDGSLSGLSRLEILNL 610
Query: 236 --NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH--LKGLTNLESLNLDSCGIGDE 291
NR + C FS + +L+ LNL N I E LV L LE + I +
Sbjct: 611 QDNRVLALHERC--FSPLENLRELNLQGNRI--EVLVDNLLDSNALLEQFDASRNSIVEI 666
Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
+L+ L+LS Q+ LSGL L +++SF +++ S L +L+
Sbjct: 667 SPKAFRNSRSLQTLDLSSNQLRELP-ESLSGLAELRELDVSFNQLTELSPNVLVSWRNLE 725
Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
L + ++ +L +L L +LDL +T LRN L+ L + L++
Sbjct: 726 ELKVSNNKVNQLHQGSLRNLPLLQYLDLSSNELTLLEHGSLRNLPELQELVLADNKLSEL 785
Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 471
+ +DL +L ++L QN LR++ P
Sbjct: 786 KERVFEDLPNLQAVHLQQN------------------------------NLRYISPYSFF 815
Query: 472 RSLTLESCKVTANDIKRLQS 491
RS ++ ++AN + L S
Sbjct: 816 RSPSIVYLNLSANQFRSLDS 835
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 134/310 (43%), Gaps = 17/310 (5%)
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI--AYL 200
R+ GL N L KL+ +N+ N I+ ++ GL LK+LQ+S +K+TD+G+ +
Sbjct: 202 RLEAGLFN--DLPKLQLINLS-ENGISWVHLRTFVGLPALKTLQLSGNKITDAGMIGRAV 258
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
K + L +L ++ ++ S L SL L LN +++ F + SLK+++L
Sbjct: 259 KDIHNLQVLRMDRNMISKLSEGSFVDLPSLKELYLNDNGITEIFHGAFHRTPSLKLVHLE 318
Query: 261 FN---EITDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSS 315
N + E + G + +E ++L IG +E L L L+ L+LS ++ +
Sbjct: 319 NNYLRRVHPESFLQASG-SGVEMMHLQQNEIGRVEELRSLLDALPMLRFLDLSHNKLEAI 377
Query: 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
L G LE + L+ I + L+ L L + D +L GL
Sbjct: 378 PFGALRGHGTLEQLYLNQNRIRMIERDAFMAMPGLRELRLQNNSLHDQLPMPFWNLPGLK 437
Query: 376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435
+D+ L +LR L+I G L+ + D + T + + N++
Sbjct: 438 GIDISYNSFRRMDPNLLVGVPSLRRLDISGNTLS------VIDAGAFTHTPMLETVNISF 491
Query: 436 KTLELISGLT 445
L LI T
Sbjct: 492 NELSLIHSAT 501
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 73/169 (43%), Gaps = 11/169 (6%)
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-----L 323
L GL L +N+ S + + L +L+ L ++ GSS L L L
Sbjct: 156 LPDFSGLPKLRYINVQSGSLIELAPQYFRDLASLETLHVT----GSSSLNRLEAGLFNDL 211
Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL--AALTSLTGLTHLDLFG 381
L+ INLS GIS LR GL +LK+L L +ITD G+ A+ + L L +
Sbjct: 212 PKLQLINLSENGISWVHLRTFVGLPALKTLQLSGNKITDAGMIGRAVKDIHNLQVLRMDR 271
Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
I+ + +L+ L + G+T+ SL L++L N
Sbjct: 272 NMISKLSEGSFVDLPSLKELYLNDNGITEIFHGAFHRTPSLKLVHLENN 320
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 99/394 (25%), Positives = 163/394 (41%), Gaps = 29/394 (7%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL-VNLKGLMKLESL 160
LRG L L + N I AF + L +L L+ + +H L + L L+ +
Sbjct: 382 LRGHGTLEQL-YLNQNRIRMIERDAFMAMPGLRELRLQNNS-LHDQLPMPFWNLPGLKGI 439
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCS--KVTDSG-IAYLKGLQKLTLLNLEGCPVT 217
+I + N D L G+ +L+ L IS + V D+G + L+ + +
Sbjct: 440 DISY-NSFRRMDPNLLVGVPSLRRLDISGNTLSVIDAGAFTHTPMLETVNI--------- 489
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKV----LNLGFNEITD----EC 268
+ LS + S + +LN D G K + I L V +NL N IT
Sbjct: 490 --SFNELSLIHSATFRDLNHMFELDAGNNKLQEFIPGLPVAVERVNLHGNMITQLPPPTT 547
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
L L NL L++ + + L+ L L+ Q+ S LSGL+ LE
Sbjct: 548 ASQLWDLPNLRMLDISANQLTRLPRAVFKPTPQLRVLSLARNQLQSVDDGSLSGLSRLEI 607
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
+NL + R + L +L+ LNL +I L S L D I +
Sbjct: 608 LNLQDNRVLALHERCFSPLENLRELNLQGNRIEVLVDNLLDSNALLEQFDASRNSIVEIS 667
Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
RN ++L++L++ L + + + L+ L L++S N LT+ + ++ L
Sbjct: 668 PKAFRNSRSLQTLDLSSNQLRELP-ESLSGLAELRELDVSFN-QLTELSPNVLVSWRNLE 725
Query: 449 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
L VSN+++ L+ L L+ L L S ++T
Sbjct: 726 ELKVSNNKVNQLHQGSLRNLPLLQYLDLSSNELT 759
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 82/367 (22%), Positives = 147/367 (40%), Gaps = 36/367 (9%)
Query: 130 LINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L NL LD+ + TR+ + +++ SL + D LSGL+ L+ L +
Sbjct: 554 LPNLRMLDISANQLTRLPRAVFKPTPQLRVLSLARNQLQSVDDGS---LSGLSRLEILNL 610
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA---------ACLDSLSALG---------- 228
++V L+ L LNL+G + A L+ A
Sbjct: 611 QDNRVLALHERCFSPLENLRELNLQGNRIEVLVDNLLDSNALLEQFDASRNSIVEISPKA 670
Query: 229 -----SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
SL L+L+ QL + E S + L+ L++ FN++T+ L NLE L +
Sbjct: 671 FRNSRSLQTLDLSSNQLRE-LPESLSGLAELRELDVSFNQLTELSPNVLVSWRNLEELKV 729
Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH--LSGLTNLESINLSFTGISDGSL 341
+ + +L L L+ L+LS ++ + L H L L L+ + L+ +S+
Sbjct: 730 SNNKVNQLHQGSLRNLPLLQYLDLSSNEL--TLLEHGSLRNLPELQELVLADNKLSELKE 787
Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
R L +L++++L + + + +L+L + + LR+ +NL L
Sbjct: 788 RVFEDLPNLQAVHLQQNNLRYISPYSFFRSPSIVYLNLSANQFRSLDSVGLRSVRNLEVL 847
Query: 402 EICGGGLTDAGVKHIKDLSSLTLLNLSQN--CNLTDKTLELISGLTGLVSLNVSNSRITS 459
++ G + ++ L L L L N C + + + L L N SR+
Sbjct: 848 DLTGNSIRKITPSPLRGLDWLVELKLDNNKICGIQGEPFATMPRLRVLSMRNNQMSRVPE 907
Query: 460 AGLRHLK 466
R L+
Sbjct: 908 PIFRSLR 914
>gi|405952059|gb|EKC19912.1| F-box/LRR-repeat protein 13 [Crassostrea gigas]
Length = 834
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 121/456 (26%), Positives = 209/456 (45%), Gaps = 53/456 (11%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL- 77
L + A +C LQDL L + G++D+ + ++ +L ++LS + +TD+ L +
Sbjct: 365 LHSATFTALSECRNLQDLNLSECKGLDDESLKLVVKGCKIILYLNLSHTHITDASLRTIS 424
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
K C N+Q L +C + SD GL++L + L L IT G K+ + ++
Sbjct: 425 KYCHNVQFLSLAYCKKFSDRGLQYLSAGKCSKKLEYLDLSGCLQITPDGFKSLSAGCTML 484
Query: 135 KLDL----------------ERCTRIHG------------GLVNLKGLMKLESLNIKWCN 166
++ + +CT+IH L L L I+
Sbjct: 485 QILVLNEFPTLNDDCMIAIAAKCTKIHTLSILGSPLLTDETFKRLANNRHLRKLRIEGNQ 544
Query: 167 CITDSDMKPL-SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNL-EGCPVTAACLDS 223
I+D +K + T L+ L ++ C ++TD+ + + KL + N+ + +T + S
Sbjct: 545 RISDLSLKAIGKNCTELEHLYLADCQRLTDASLKAIANCSKLVVCNMADVVQITNTGVQS 604
Query: 224 L---SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKG-LTN 277
L S SL LNL C ++ D K +L L++ F E I+++ + L G L
Sbjct: 605 LAEGSCAASLRELNLTNCIRVGDMAMFNIRKFKNLVYLSVCFCEHISEKSGIELLGQLHA 664
Query: 278 LESLNLDSCGIGDEGLVNLTGLCN-LKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFT 334
L SL++ C DEGL +L N L+ + LS+ + GL+ + ++E ++LS
Sbjct: 665 LVSLDISGCNCSDEGLSSLGKYNNHLRDVTLSECADITDLGLQKFTQQCKDIERLDLSHC 724
Query: 335 G-ISDGSLRKLAG-LSSLKSLNLDA-RQITDTGLAALTSLTGLTH-LDLFGA-RITDSGA 389
++DG+++ LA L SLNL + IT+ + L+ + H LD+ G ITD
Sbjct: 725 KLLTDGAIKNLAFCCRYLTSLNLAGCKLITNLSIQYLSGVCHHLHTLDISGCIIITDKAL 784
Query: 390 AYLRN-FKNLRSLEI--CGGGLTDAGVKHIKDLSSL 422
YLR K L+ L + C G A +K ++ + +L
Sbjct: 785 KYLRKGCKKLKYLTMLYCKGVTKHAAMKMMRHVPAL 820
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 110/393 (27%), Positives = 169/393 (43%), Gaps = 69/393 (17%)
Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWC 165
L LS R + + + A + NL L+L C + + L KG + LN+
Sbjct: 354 LIHLSMRGCSQLHSATFTALSECRNLQDLNLSECKGLDDESLKLVVKGCKIILYLNLSHT 413
Query: 166 NCITDSDMKPLSGL-TNLKSLQIS-CSKVTDSGIAYL---KGLQKLTLLNLEGC-PVTAA 219
+ ITD+ ++ +S N++ L ++ C K +D G+ YL K +KL L+L GC +T
Sbjct: 414 H-ITDASLRTISKYCHNVQFLSLAYCKKFSDRGLQYLSAGKCSKKLEYLDLSGCLQITPD 472
Query: 220 CLDSLSALGSLF-YLNLNRCQLSDDGC-----EKFSKIGSLKVLNLGFNEITDECLVHLK 273
SLSA ++ L LN +D C K +KI +L +L G +TDE L
Sbjct: 473 GFKSLSAGCTMLQILVLNEFPTLNDDCMIAIAAKCTKIHTLSIL--GSPLLTDETFKRLA 530
Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS- 332
+L L ++ N + +LS +G + T LE + L+
Sbjct: 531 NNRHLRKLRIEG---------------NQRISDLSLKAIGKN-------CTELEHLYLAD 568
Query: 333 FTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS---LTGLTHLDLFGA-RITDS 387
++D SL+ +A S L N+ D QIT+TG+ +L L L+L R+ D
Sbjct: 569 CQRLTDASLKAIANCSKLVVCNMADVVQITNTGVQSLAEGSCAASLRELNLTNCIRVGDM 628
Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
+R FKNL L +C +HI + S + EL+ L L
Sbjct: 629 AMFNIRKFKNLVYLSVCF-------CEHISEKSGI----------------ELLGQLHAL 665
Query: 448 VSLNVSNSRITSAGLRHLKPLKN-LRSLTLESC 479
VSL++S + GL L N LR +TL C
Sbjct: 666 VSLDISGCNCSDEGLSSLGKYNNHLRDVTLSEC 698
>gi|422414916|ref|ZP_16491873.1| internalin A, partial [Listeria innocua FSL J1-023]
gi|313625062|gb|EFR94940.1| internalin A [Listeria innocua FSL J1-023]
Length = 676
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 120/393 (30%), Positives = 176/393 (44%), Gaps = 60/393 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDIVMNNN-QIAD--ISPLANLTNLTGLTLFTN 152
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+K L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 153 QITDIDPLK---NLTNLNRLELSGNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN-- 234
+ LT L+ L IS +KVTD + L KLT NLE T + ++ LG L L+
Sbjct: 204 ANLTTLERLDISSNKVTDISV-----LSKLT--NLERLIATNNQISDITPLGILINLDEL 256
Query: 235 -LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
LN QL D G + +L L+L N+I++ L L LT L L L + I + +
Sbjct: 257 SLNGNQLKDIGT--LVSLTNLTNLDLANNQISN--LAPLTDLTKLTELKLGANQISN--I 310
Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
L GL L LEL + Q+ + +S L NL + L ISD SL K
Sbjct: 311 SPLAGLTALTNLELHENQL--EDISPISNLKNLTYLTLYINNISDISPVSSLTKLQRLFF 368
Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
LA L+++ L+ QI+D L L +LT +T L L T+ Y
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGNNQISD--LTPLANLTRITQLGLNDQAWTNPPVNYKA 426
Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
N KN+ I ++D G D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 81/177 (45%), Gaps = 50/177 (28%)
Query: 316 GLRHLSG---LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSL 371
G++ ++G L NL IN S ++D + L L+ L + ++ QI D + LA LT+L
Sbjct: 87 GIKSINGVEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDIVMNNNQIADISPLANLTNL 144
Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
TGLT LF +ITD L+N NL LE+ G ++D
Sbjct: 145 TGLT---LFTNQITDIDP--LKNLTNLNRLELSGNTISD--------------------- 178
Query: 432 NLTDKTLELISGLTGLVSLNVSNSRITSAG--LRHLKPLKNLRSLTLESCKVTANDI 486
IS L+GL SL + S G + LKPL NL TLE +++N +
Sbjct: 179 ---------ISALSGLTSL-----QQLSFGNQVTDLKPLANLT--TLERLDISSNKV 219
>gi|430744490|ref|YP_007203619.1| hypothetical protein Sinac_3679 [Singulisphaera acidiphila DSM
18658]
gi|430016210|gb|AGA27924.1| hypothetical protein Sinac_3679 [Singulisphaera acidiphila DSM
18658]
Length = 242
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 26/206 (12%)
Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
F EI + LV N S + D L+ L L NLK + L+ +Q GL+ L
Sbjct: 53 FQEIAEVSLVRDPFAPN--SFQPINNAKADNLLLQLADLTNLKGVLLTGSQATDQGLKCL 110
Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
S + NLE+I + ++A ++TD G+ L L+ L L +
Sbjct: 111 SQMENLENI-----------------------VTVEATEVTDVGVFYLEKLSKLRDLHIS 147
Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
+ +TD+ A + L + + G LTDAG+ H+KDL L +L+L+ + LTD LE
Sbjct: 148 YSNLTDAAIASIAKHPKLEQILVRGNRLTDAGLTHLKDLECLQVLDLA-DTGLTDVGLEE 206
Query: 441 ISGLTGLVSLNVSNSRITSAGLRHLK 466
+ L L + V ++++T AG++ LK
Sbjct: 207 LRLLAKLRIVCVGDTKVTEAGVQRLK 232
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 81/158 (51%), Gaps = 1/158 (0%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT-LLNLEGCPVTAACLDSL 224
N D+ + L+ LTNLK + ++ S+ TD G+ L ++ L ++ +E VT + L
Sbjct: 76 NAKADNLLLQLADLTNLKGVLLTGSQATDQGLKCLSQMENLENIVTVEATEVTDVGVFYL 135
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
L L L+++ L+D +K L+ + + N +TD L HLK L L+ L+L
Sbjct: 136 EKLSKLRDLHISYSNLTDAAIASIAKHPKLEQILVRGNRLTDAGLTHLKDLECLQVLDLA 195
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
G+ D GL L L L+ + + DT+V +G++ L
Sbjct: 196 DTGLTDVGLEELRLLAKLRIVCVGDTKVTEAGVQRLKA 233
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 80/152 (52%), Gaps = 6/152 (3%)
Query: 333 FTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
F I++ SL R +S + +N +A+ D L L LT L + L G++ TD G
Sbjct: 53 FQEIAEVSLVRDPFAPNSFQPIN-NAK--ADNLLLQLADLTNLKGVLLTGSQATDQGLKC 109
Query: 392 LRNFKNLRSL-EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
L +NL ++ + +TD GV +++ LS L L++S + NLTD + I+ L +
Sbjct: 110 LSQMENLENIVTVEATEVTDVGVFYLEKLSKLRDLHISYS-NLTDAAIASIAKHPKLEQI 168
Query: 451 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
V +R+T AGL HLK L+ L+ L L +T
Sbjct: 169 LVRGNRLTDAGLTHLKDLECLQVLDLADTGLT 200
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 76/140 (54%), Gaps = 3/140 (2%)
Query: 239 QLSDDGCEKFSKIGSLK-VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
Q +D G + S++ +L+ ++ + E+TD + +L+ L+ L L++ + D + ++
Sbjct: 101 QATDQGLKCLSQMENLENIVTVEATEVTDVGVFYLEKLSKLRDLHISYSNLTDAAIASIA 160
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
L+ + + ++ +GL HL L L+ ++L+ TG++D L +L L+ L+ + +
Sbjct: 161 KHPKLEQILVRGNRLTDAGLTHLKDLECLQVLDLADTGLTDVGLEELRLLAKLRIVCVGD 220
Query: 358 RQITDTGLAALTSLTGLTHL 377
++T+ G+ L + + HL
Sbjct: 221 TKVTEAGVQRLKA--AMPHL 238
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 73/159 (45%)
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
NNA + A L NL + L GL L + LE++ +TD +
Sbjct: 75 NNAKADNLLLQLADLTNLKGVLLTGSQATDQGLKCLSQMENLENIVTVEATEVTDVGVFY 134
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L L+ L+ L IS S +TD+ IA + KL + + G +T A L L L L L+L
Sbjct: 135 LEKLSKLRDLHISYSNLTDAAIASIAKHPKLEQILVRGNRLTDAGLTHLKDLECLQVLDL 194
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
L+D G E+ + L+++ +G ++T+ + LK
Sbjct: 195 ADTGLTDVGLEELRLLAKLRIVCVGDTKVTEAGVQRLKA 233
Score = 45.1 bits (105), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 8/149 (5%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L V L+GS TD GL L NL+++ +++D G+ +L LS L L +
Sbjct: 90 TNLKGVLLTGSQATDQGLKCLSQMENLENIVTVEATEVTDVGVFYLEKLSKLRDLHISYS 149
Query: 117 NAITAQGMKAFAGLINLVKLD--LERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N A A A + KL+ L R R+ GL +LK L L+ L++ +TD +
Sbjct: 150 NLTDA----AIASIAKHPKLEQILVRGNRLTDAGLTHLKDLECLQVLDLA-DTGLTDVGL 204
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
+ L L L+ + + +KVT++G+ LK
Sbjct: 205 EELRLLAKLRIVCVGDTKVTEAGVQRLKA 233
>gi|397563975|gb|EJK44014.1| hypothetical protein THAOC_37488 [Thalassiosira oceanica]
Length = 1585
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 142/480 (29%), Positives = 218/480 (45%), Gaps = 89/480 (18%)
Query: 38 LGQYPGV-NDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQIS 95
L Q+ V D+ + I+ ++ ++LSG+D VTD G+ L CS LQ L+ + ++
Sbjct: 585 LSQWSLVATDECIHTISCHNHDIIHLNLSGADAVTDEGIQSLSKCSQLQELNLDNIFRLQ 644
Query: 96 DGGLEHLRGLSNLTSL--SFRRNNAITAQGMKA--FAGL----INLVKLDLERCTRIHGG 147
G LS +T + R + G+KA FA L LV L L C +I
Sbjct: 645 TG-------LSLVTERCCAIRDLSLCGCLGLKAPQFASLGQNARGLVSLKLSGCRQITPW 697
Query: 148 LVN--LKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQI-SCSKVTDSGIAYLKGL 203
+GL LE L+I +C+ +TD ++K LS T L+ L + C V+D G+ +L
Sbjct: 698 AFTKLFEGLKLLEILDISYCSLVTDQEIKLLSESATGLRCLNLRECKLVSDIGLTFLS-- 755
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263
+GC L LNL R +L ++ + +L +G
Sbjct: 756 --------QGCT-------------ELVDLNLRRSELP-------FRVTDVALLQIG--- 784
Query: 264 ITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLC-NLKCLELSD-TQVGSSGLRHL 320
+G +L +LNL C I D GL L L+ + L++ T++ ++G RHL
Sbjct: 785 ---------QGCRSLRALNLHGCELISDTGLSWLASWAKQLRHVNLANCTKITNAGARHL 835
Query: 321 -SGLTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA---------RQITDTGLAAL 368
G NL S L+ +SD LR LA G S L++LN R+ GL AL
Sbjct: 836 GDGCPNLISAVLTNVKRVSDVGLRCLANGCSKLETLNCSGLAMLSDGVDREFGLEGLQAL 895
Query: 369 ---TSLTGLTHLDLFGARITDS-GAAYLRNFKNLRSLEICGGG-LTDAGVKHI-KDLSSL 422
+ T L +L++ G + + + F NL L++ +T AG K I K L
Sbjct: 896 GASSCSTTLKNLNIRGCTLISTLSMRAISKFANLERLDLSSNNKVTIAGAKFIGKACRRL 955
Query: 423 TLLNLSQ--NCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 479
T L+LS +C LI+G LVS N+S+ +ITS L+ L ++L+S+ L +C
Sbjct: 956 THLSLSSCGDCICNGIVDALITGQINLVSANLSSCKKITS--LKALATCRSLQSVDLTNC 1013
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 111/415 (26%), Positives = 186/415 (44%), Gaps = 66/415 (15%)
Query: 18 RCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIH 76
R T +SL R CA++DL L G+ + L+S+ LSG +T
Sbjct: 642 RLQTGLSLVTERCCAIRDLSLCGCLGLKAPQFASLGQNARGLVSLKLSGCRQITPWAFTK 701
Query: 77 L-KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFA-GLINL 133
L + L+ LD ++C ++D ++ L + L L+ R ++ G+ + G L
Sbjct: 702 LFEGLKLLEILDISYCSLVTDQEIKLLSESATGLRCLNLRECKLVSDIGLTFLSQGCTEL 761
Query: 134 VKLDLERCT---RIHG-GLVNL-KGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQI 187
V L+L R R+ L+ + +G L +LN+ C I+D+ + L S L+ + +
Sbjct: 762 VDLNLRRSELPFRVTDVALLQIGQGCRSLRALNLHGCELISDTGLSWLASWAKQLRHVNL 821
Query: 188 S-CSKVTDSGIAYL---------------------------KGLQKLTLLNLEGCPVTAA 219
+ C+K+T++G +L G KL LN G + +
Sbjct: 822 ANCTKITNAGARHLGDGCPNLISAVLTNVKRVSDVGLRCLANGCSKLETLNCSGLAMLSD 881
Query: 220 CLDS------LSALGS------LFYLNLNRCQL-SDDGCEKFSKIGSLKVLNLGF-NEIT 265
+D L ALG+ L LN+ C L S SK +L+ L+L N++T
Sbjct: 882 GVDREFGLEGLQALGASSCSTTLKNLNIRGCTLISTLSMRAISKFANLERLDLSSNNKVT 941
Query: 266 DECLVHL-KGLTNLESLNLDSCGIGD---EGLVN--LTGLCNLKCLELSDTQVGSSGLRH 319
+ K L L+L SC GD G+V+ +TG NL LS + +S L+
Sbjct: 942 IAGAKFIGKACRRLTHLSLSSC--GDCICNGIVDALITGQINLVSANLSSCKKITS-LKA 998
Query: 320 LSGLTNLESINLS-FTGISDGSLRKL---AGLSSLKSLNL-DARQITDTGLAALT 369
L+ +L+S++L+ +GI+DG++ +L A L++L+L +TDT L L+
Sbjct: 999 LATCRSLQSVDLTNCSGITDGAILQLTEGAFEPGLRALHLVKCSLVTDTALYWLS 1053
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 93/321 (28%), Positives = 141/321 (43%), Gaps = 65/321 (20%)
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC----QLSDDGC-- 245
VTD GI L +L LNL D++ L + L RC LS GC
Sbjct: 618 VTDEGIQSLSKCSQLQELNL----------DNIFRLQTGLSLVTERCCAIRDLSLCGCLG 667
Query: 246 ---EKFSKIGS----LKVLNL-GFNEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNL 296
+F+ +G L L L G +IT L +GL LE L++ C + + + L
Sbjct: 668 LKAPQFASLGQNARGLVSLKLSGCRQITPWAFTKLFEGLKLLEILDISYCSLVTDQEIKL 727
Query: 297 --TGLCNLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG----ISDGSLRKLA-GL 347
L+CL L + + V GL LS G T L +NL + ++D +L ++ G
Sbjct: 728 LSESATGLRCLNLRECKLVSDIGLTFLSQGCTELVDLNLRRSELPFRVTDVALLQIGQGC 787
Query: 348 SSLKSLNLDARQ-ITDTGLAALTSLTG-LTHLDLFG-ARITDSGAAYLRNFKNLRSLEIC 404
SL++LNL + I+DTGL+ L S L H++L +IT++GA +L
Sbjct: 788 RSLRALNLHGCELISDTGLSWLASWAKQLRHVNLANCTKITNAGARHL------------ 835
Query: 405 GGG---LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
G G L A + ++K +S + L L+ C + L +LN S + S G
Sbjct: 836 GDGCPNLISAVLTNVKRVSDVGLRCLANGC-------------SKLETLNCSGLAMLSDG 882
Query: 462 LRHLKPLKNLRSLTLESCKVT 482
+ L+ L++L SC T
Sbjct: 883 VDREFGLEGLQALGASSCSTT 903
>gi|290980964|ref|XP_002673201.1| predicted protein [Naegleria gruberi]
gi|284086783|gb|EFC40457.1| predicted protein [Naegleria gruberi]
Length = 336
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 116/239 (48%), Gaps = 12/239 (5%)
Query: 268 CLVHLKGLT--------NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
C HLKG T + L L+ GI + G++ ++G+ LK L++ + ++ ++
Sbjct: 48 CGHHLKGATIKPLTMLKQVTDLVLNENGISELGVIYISGMIQLKSLDIRNNEINVESAKY 107
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
++ L L+S+++S ++ L + G+ +L L +D I G ++ + LT L +
Sbjct: 108 ITQLRKLQSLSVSVR--NNEVLTLIGGMKNLTRLRIDRNNIGHDGAKIISRMKQLTSLHI 165
Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
+ GA + + K L L I + G +I +L LT L + NC + D+ +
Sbjct: 166 SNNSLLSEGAKLISSMKKLTELVITNNNIGIMGTFYISELKELTKLCIGFNC-IGDEGAK 224
Query: 440 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL-QSRDLPNL 497
ISGL LV LNV+ + I AG + + L+NL L+ + A K + Q R+L L
Sbjct: 225 HISGLKKLVDLNVTWNEIGLAGAKSIGELRNLTHLSAGENDIPAEGAKAISQLRNLTYL 283
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 119/262 (45%), Gaps = 2/262 (0%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N I++ + +SG+ LKSL I +++ Y+ L+KL L++ L +
Sbjct: 74 NGISELGVIYISGMIQLKSLDIRNNEINVESAKYITQLRKLQSLSV--SVRNNEVLTLIG 131
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
+ +L L ++R + DG + S++ L L++ N + E + + L L + +
Sbjct: 132 GMKNLTRLRIDRNNIGHDGAKIISRMKQLTSLHISNNSLLSEGAKLISSMKKLTELVITN 191
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
IG G ++ L L L + +G G +H+SGL L +N+++ I + +
Sbjct: 192 NNIGIMGTFYISELKELTKLCIGFNCIGDEGAKHISGLKKLVDLNVTWNEIGLAGAKSIG 251
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
L +L L+ I G A++ L LT+LD+ G I D G + L +L I
Sbjct: 252 ELRNLTHLSAGENDIPAEGAKAISQLRNLTYLDIVGNPIGDEGGLAISELTKLTTLFIGV 311
Query: 406 GGLTDAGVKHIKDLSSLTLLNL 427
L++ + +K + L + +L
Sbjct: 312 YSLSNCSIDQLKKMKQLRVSDL 333
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/319 (23%), Positives = 129/319 (40%), Gaps = 53/319 (16%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC-NCITDSDMKPLSGLTNLKSLQISCS 190
N+V L ER + LK + +L + I C + + + +KPL+ L + L ++ +
Sbjct: 17 NVVSLRTERVSDFPKFCTILKSMNQLRRVEI--CGHHLKGATIKPLTMLKQVTDLVLNEN 74
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
+++ G+ Y+ G+ +L L++ + ++ L L L
Sbjct: 75 GISELGVIYISGMIQLKSLDIRNNEINVESAKYITQLRKLQSL----------------- 117
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS-- 308
S+ V N +E L + G+ NL L +D IG +G ++ + L L +S
Sbjct: 118 --SVSVRN-------NEVLTLIGGMKNLTRLRIDRNNIGHDGAKIISRMKQLTSLHISNN 168
Query: 309 ----------------------DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 346
+ +G G ++S L L + + F I D + ++G
Sbjct: 169 SLLSEGAKLISSMKKLTELVITNNNIGIMGTFYISELKELTKLCIGFNCIGDEGAKHISG 228
Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
L L LN+ +I G ++ L LTHL I GA + +NL L+I G
Sbjct: 229 LKKLVDLNVTWNEIGLAGAKSIGELRNLTHLSAGENDIPAEGAKAISQLRNLTYLDIVGN 288
Query: 407 GLTDAGVKHIKDLSSLTLL 425
+ D G I +L+ LT L
Sbjct: 289 PIGDEGGLAISELTKLTTL 307
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 112/243 (46%), Gaps = 31/243 (12%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDF-NFCIQISDGG-LEHLRGLSNLTSLSFRRNNAITA 121
L+ + +++ G+I++ L+SLD N I + + LR L +L S+S R N +T
Sbjct: 71 LNENGISELGVIYISGMIQLKSLDIRNNEINVESAKYITQLRKLQSL-SVSVRNNEVLTL 129
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD-----SDMKPL 176
G G+ NL +L ++R H G + + +L SL+I + +++ S MK L
Sbjct: 130 IG-----GMKNLTRLRIDRNNIGHDGAKIISRMKQLTSLHISNNSLLSEGAKLISSMKKL 184
Query: 177 ------------------SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
S L L L I + + D G ++ GL+KL LN+ +
Sbjct: 185 TELVITNNNIGIMGTFYISELKELTKLCIGFNCIGDEGAKHISGLKKLVDLNVTWNEIGL 244
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
A S+ L +L +L+ + +G + S++ +L L++ N I DE + + LT L
Sbjct: 245 AGAKSIGELRNLTHLSAGENDIPAEGAKAISQLRNLTYLDIVGNPIGDEGGLAISELTKL 304
Query: 279 ESL 281
+L
Sbjct: 305 TTL 307
>gi|254825619|ref|ZP_05230620.1| cell wall surface anchor family protein [Listeria monocytogenes FSL
J1-194]
gi|293594862|gb|EFG02623.1| cell wall surface anchor family protein [Listeria monocytogenes FSL
J1-194]
Length = 1775
Score = 73.6 bits (179), Expect = 2e-10, Method: Composition-based stats.
Identities = 116/422 (27%), Positives = 189/422 (44%), Gaps = 73/422 (17%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+E L+ L NLTSL+ NN + L+NLV L+L + LVNL G
Sbjct: 172 IEGLQYLENLTSLNLSENN---ISDLAPIKDLVNLVSLNLSS----NRTLVNLSG----- 219
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+ GL NL+ L +S +K + I+ + L L ++ +GC +
Sbjct: 220 -----------------VEGLVNLQELNVSANKALED-ISQVAVLPVLKEISAQGCNIKT 261
Query: 219 ACLDSLSA--LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
LD+ + L L L L+D +K+ LK L + N + + L LKG T
Sbjct: 262 LELDNPAGAILPELETFYLQENDLTD--LTSLAKLPKLKNLYIKGNA-SLKSLATLKGAT 318
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES-INLSFTG 335
L+ ++ +C E L +++GL L+ ++LS G S L+ ++ L +L + +N++
Sbjct: 319 KLQLIDASNC-TDLETLGDISGLSELEMIQLS----GCSKLKEITSLKDLPNLVNITADS 373
Query: 336 ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
+ L L L L++L L D + +T+ + A+T + L L L G IT G L N
Sbjct: 374 CAIEDLGTLNNLPKLQTLILSDNKDLTN--INAITDMPQLKTLALDGCGITSIGT--LDN 429
Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN----------------CNLTDKTL 438
L L++ LT + I DL L+ L++S N N++ L
Sbjct: 430 LPKLEKLDLKENQLTS--ISEINDLPRLSYLDVSVNYLTTIGELKKLPLLEWLNVSSNRL 487
Query: 439 ELISGLTGLVSL---NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP 495
+S LT SL NVSN+ I + G + L +L+ ++ ++ DI + D+P
Sbjct: 488 SDVSTLTNFPSLNYINVSNNVIRTVG--KMTELPSLKEFYAQNNNIS--DISMIH--DMP 541
Query: 496 NL 497
NL
Sbjct: 542 NL 543
Score = 55.8 bits (133), Expect = 5e-05, Method: Composition-based stats.
Identities = 126/494 (25%), Positives = 209/494 (42%), Gaps = 91/494 (18%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L + LSG + LKD NL ++ + C I D G L L L +L N
Sbjct: 341 SELEMIQLSGCSKLKE-ITSLKDLPNLVNITADSC-AIEDLGT--LNNLPKLQTLILSDN 396
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T + A + L L L+ C G L L KLE L++K + S+ +
Sbjct: 397 KDLT--NINAITDMPQLKTLALDGCGITSIG--TLDNLPKLEKLDLKENQLTSISE---I 449
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ L L L +S + +T I LK L L LN+ ++ + +L+ SL Y+N++
Sbjct: 450 NDLPRLSYLDVSVNYLTT--IGELKKLPLLEWLNVSSNRLSD--VSTLTNFPSLNYINVS 505
Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
+ G K +++ SLK N I+D ++H + NL ++ + I + G
Sbjct: 506 NNVIRTVG--KMTELPSLKEFYAQNNNISDISMIH--DMPNLRKVDASNNLITNIG--TF 559
Query: 297 TGLCNLKCLELSDTQVGSSGLRH--------------------LSGLTNLESINLSFTGI 336
L L+ L++ ++ ++ + H + L L ++LSF I
Sbjct: 560 DNLPKLQNLDVHSNRITNTSVIHDLPSLETFYAQNNLITNIGTMDNLPELTYVDLSFNRI 619
Query: 337 SD----GSLRKLA------------------GLSSLKSLNLDARQITDTG----LAALTS 370
G L KL G+S L++L L + TG L+AL+
Sbjct: 620 PSLAPIGDLPKLEILKVTDNYSYLRSLGTMDGVSKLRNLELQNNYLNYTGTEGNLSALSD 679
Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
LT LT L+L D+G Y+ + L +L D+ IKD+S+L+ L Q
Sbjct: 680 LTNLTELNL-----RDNG--YISDISGLSTLSRLIYLNLDS--NKIKDISALSNLTTLQE 730
Query: 431 CNLTDKTLELISGLTGLVSLN---VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 487
L + +E IS L+ L +LN +S ++I + P N+ + VTA++
Sbjct: 731 LTLENNQIEDISALSDLDNLNKLALSKNKIID-----ISPAANMVN---RGASVTASN-- 780
Query: 488 RLQSRDLPNLVSFR 501
Q+ LP ++S++
Sbjct: 781 --QTYTLPTVLSYQ 792
Score = 39.3 bits (90), Expect = 4.6, Method: Composition-based stats.
Identities = 61/207 (29%), Positives = 94/207 (45%), Gaps = 30/207 (14%)
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
S + L L NL S+NLS ISD L + L +L SLNL + + T L+ + L L
Sbjct: 170 SNIEGLQYLENLTSLNLSENNISD--LAPIKDLVNLVSLNLSSNR-TLVNLSGVEGLVNL 226
Query: 375 THLDLFGARITD--SGAAYLRNFK-------NLRSLEI---CGGGLTDAGVKHIK--DLS 420
L++ + + S A L K N+++LE+ G L + +++ DL+
Sbjct: 227 QELNVSANKALEDISQVAVLPVLKEISAQGCNIKTLELDNPAGAILPELETFYLQENDLT 286
Query: 421 SLT-------LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 473
LT L NL N + K+L + G T L ++ SN L + L L
Sbjct: 287 DLTSLAKLPKLKNLYIKGNASLKSLATLKGATKLQLIDASNCTDLET-LGDISGLSELEM 345
Query: 474 LTLESCKVTANDIKRLQS-RDLPNLVS 499
+ L C + +K + S +DLPNLV+
Sbjct: 346 IQLSGC----SKLKEITSLKDLPNLVN 368
>gi|406832962|ref|ZP_11092556.1| hypothetical protein SpalD1_15024 [Schlesneria paludicola DSM
18645]
Length = 236
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 1/142 (0%)
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
+ GL L S++L T I D L+++A L +L +L L ITD GL L S L+ LDL
Sbjct: 68 VKGLDQLTSLDLRKTDIGDTHLKEIAELENLTTLRLSNVPITDAGLIELRSQKKLSTLDL 127
Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
G RITD G L +LR L++ +T G+K + L +L LNL +N + D LE
Sbjct: 128 AGTRITDDGLKELSVHHSLRYLDLSETTITGMGLKDLSGLPNLLSLNL-ENTKVNDTGLE 186
Query: 440 LISGLTGLVSLNVSNSRITSAG 461
+ L+ +N+ + +T AG
Sbjct: 187 CVHEFKHLIRINLRRTSVTDAG 208
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 13/198 (6%)
Query: 230 LFYLNLNRCQLSDDGCEKF----------SKIGSLKVLNLGF---NEITDECLVHLKGLT 276
+ + N R + D+ +K K+ V+++ F + + L +KGL
Sbjct: 13 VLWPNPARAEDQDEAIKKIRLLRGEVRLDDKLPGTPVVSVSFYGSSRFNGKFLHLVKGLD 72
Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336
L SL+L IGD L + L NL L LS+ + +GL L L +++L+ T I
Sbjct: 73 QLTSLDLRKTDIGDTHLKEIAELENLTTLRLSNVPITDAGLIELRSQKKLSTLDLAGTRI 132
Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
+D L++L+ SL+ L+L IT GL L+ L L L+L ++ D+G + FK
Sbjct: 133 TDDGLKELSVHHSLRYLDLSETTITGMGLKDLSGLPNLLSLNLENTKVNDTGLECVHEFK 192
Query: 397 NLRSLEICGGGLTDAGVK 414
+L + + +TDAG K
Sbjct: 193 HLIRINLRRTSVTDAGQK 210
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 84/157 (53%), Gaps = 4/157 (2%)
Query: 329 INLSFTGIS--DGSLRKLA-GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
+++SF G S +G L GL L SL+L I DT L + L LT L L IT
Sbjct: 50 VSVSFYGSSRFNGKFLHLVKGLDQLTSLDLRKTDIGDTHLKEIAELENLTTLRLSNVPIT 109
Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 445
D+G LR+ K L +L++ G +TD G+K + SL L+LS+ +T L+ +SGL
Sbjct: 110 DAGLIELRSQKKLSTLDLAGTRITDDGLKELSVHHSLRYLDLSETT-ITGMGLKDLSGLP 168
Query: 446 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
L+SLN+ N+++ GL + K+L + L VT
Sbjct: 169 NLLSLNLENTKVNDTGLECVHEFKHLIRINLRRTSVT 205
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 90/191 (47%), Gaps = 18/191 (9%)
Query: 211 LEGCPVTAAC-----------LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
L G PV + L + L L L+L + + D ++ +++ +L L L
Sbjct: 44 LPGTPVVSVSFYGSSRFNGKFLHLVKGLDQLTSLDLRKTDIGDTHLKEIAELENLTTLRL 103
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
ITD L+ L+ L +L+L I D+GL L+ +L+ L+LS+T + GL+
Sbjct: 104 SNVPITDAGLIELRSQKKLSTLDLAGTRITDDGLKELSVHHSLRYLDLSETTITGMGLKD 163
Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
LSGL NL S+NL T ++D L + L +NL +TD G A + + +
Sbjct: 164 LSGLPNLLSLNLENTKVNDTGLECVHEFKHLIRINLRRTSVTDAGQKAFS-------VSM 216
Query: 380 FGARITDSGAA 390
RI DSG+
Sbjct: 217 PNTRIYDSGSG 227
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 84/178 (47%), Gaps = 12/178 (6%)
Query: 96 DGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154
+G HL +GL LTSL R+ + I +K A L NL L L GL+ L+
Sbjct: 61 NGKFLHLVKGLDQLTSLDLRKTD-IGDTHLKEIAELENLTTLRLSNVPITDAGLIELRSQ 119
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
KL +L++ ITD +K LS +L+ L +S + +T G+ L GL L LNLE
Sbjct: 120 KKLSTLDLAGTR-ITDDGLKELSVHHSLRYLDLSETTITGMGLKDLSGLPNLLSLNLENT 178
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS------KI---GSLKVLNLGFNE 263
V L+ + L +NL R ++D G + FS +I GS N+G N
Sbjct: 179 KVNDTGLECVHEFKHLIRINLRRTSVTDAGQKAFSVSMPNTRIYDSGSGPAFNVGMNR 236
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 26/182 (14%)
Query: 141 CTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
+R +G ++L KGL +L SL+++ + I D+ +K ++ L NL +L++S +TD+G+
Sbjct: 57 SSRFNGKFLHLVKGLDQLTSLDLRKTD-IGDTHLKEIAELENLTTLRLSNVPITDAGLIE 115
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
L+ +KL+ L+L G +T DDG ++ S SL+ L+L
Sbjct: 116 LRSQKKLSTLDLAGTRIT------------------------DDGLKELSVHHSLRYLDL 151
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
IT L L GL NL SLNL++ + D GL + +L + L T V +G +
Sbjct: 152 SETTITGMGLKDLSGLPNLLSLNLENTKVNDTGLECVHEFKHLIRINLRRTSVTDAGQKA 211
Query: 320 LS 321
S
Sbjct: 212 FS 213
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 8/164 (4%)
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
GL L L+L T +G + L+ ++ L NL ++ LS I+D L +L L +L+L
Sbjct: 70 GLDQLTSLDLRKTDIGDTHLKEIAELENLTTLRLSNVPITDAGLIELRSQKKLSTLDLAG 129
Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
+ITD GL L+ L +LDL IT G L NL SL + + D G++ +
Sbjct: 130 TRITDDGLKELSVHHSLRYLDLSETTITGMGLKDLSGLPNLLSLNLENTKVNDTGLECVH 189
Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
+ L +NL + ++TD +G S+++ N+RI +G
Sbjct: 190 EFKHLIRINL-RRTSVTD------AGQKAF-SVSMPNTRIYDSG 225
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 10/140 (7%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L ++ LS +TD+GLI L+ L +LD +I+D GL+ L +L L
Sbjct: 96 ENLTTLRLSNVPITDAGLIELRSQKKLSTLDLA-GTRITDDGLKELSVHHSLRYLDL-SE 153
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
IT G+K +GL NL+ L+LE GL + L +N++ +TD+ K
Sbjct: 154 TTITGMGLKDLSGLPNLLSLNLENTKVNDTGLECVHEFKHLIRINLRRT-SVTDAGQKAF 212
Query: 177 SGLTNLKSLQISCSKVTDSG 196
S+ + +++ DSG
Sbjct: 213 -------SVSMPNTRIYDSG 225
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
++ L SL++ + D +K I +L +LT L LS N +TD L + L +L+
Sbjct: 68 VKGLDQLTSLDLRKTDIGDTHLKEIAELENLTTLRLS-NVPITDAGLIELRSQKKLSTLD 126
Query: 452 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 500
++ +RIT GL+ L +LR L L +T +K L LPNL+S
Sbjct: 127 LAGTRITDDGLKELSVHHSLRYLDLSETTITGMGLKDLSG--LPNLLSL 173
>gi|407034343|gb|EKE37172.1| leucine rich repeat protein [Entamoeba nuttalli P19]
Length = 657
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 87/366 (23%), Positives = 162/366 (44%), Gaps = 44/366 (12%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS SD G I+L C++L+ L N ++++ L+ L + NL +S + ++
Sbjct: 260 LSPSD----GFIYLAGCNSLRYLYLNES-EVTNYHLDVLARMDNLLGISLKGCPTLSDYS 314
Query: 124 MKAF-AGLI--NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+ F G I +L +L++ H GL + L L L+I C+ I + PL+ L
Sbjct: 315 LTPFKTGPIRKSLEELNISDTMVTHIGLQIIVRLKYLRVLDISRCDGI--KILSPLNSLK 372
Query: 181 NLKSLQISCSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNR 237
L+ L++S V + A+ + L L ++ P+ L + S +L +NL
Sbjct: 373 YLEVLRLSNVHVNSDTLQDAFRIPPKYLQQLLVDARPIDDPLLTVICSKFPNLVSVNLKE 432
Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL 296
Q++ G E + L+ ++ + D+ +L +T+LE+++ + C I EG+ L
Sbjct: 433 SQITSRGVEALQMVKYLRYVDFSKTSVDDQVFEYLSKITSLETISFEECQNISGEGVHVL 492
Query: 297 TGLCNLKCL--------------ELSD-----------TQVGSSGLRHLSGLTNLESINL 331
L L+ L E+ D Q+G ++++ + L+ ++L
Sbjct: 493 EPLRGLRVLNFNGCKNFSEYSLKEMEDLSVETLRVSGANQIGMEAWKYIAQIEQLKRLDL 552
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
SFT + D ++++ L+ + L +ITD + L + +D AR T+ Y
Sbjct: 553 SFTNVEDNGIQEMLKSKWLEVIYLRHTKITDKSIETLLCCNLIRKID---ARETNVEKQY 609
Query: 392 LRNFKN 397
NF N
Sbjct: 610 --NFSN 613
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 147/339 (43%), Gaps = 32/339 (9%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
ITDSD+ + LT LK L IS K I + + +LT L + P+ +L
Sbjct: 175 ITDSDIPSIGKLTGLKKLSISSKKFI-GKIEDMIDVSQLTSLEISNAPLGPEFYYNLYLF 233
Query: 228 GSLFYLNLNRCQL---------------SDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
L ++ RC L DG + SL+ L L +E+T+ L L
Sbjct: 234 PYLVFIGFTRCHLPISGVSAQTPLSQLSPSDGFIYLAGCNSLRYLYLNESEVTNYHLDVL 293
Query: 273 KGLTNLESLNLDSCG-IGDEGLVNL-TGLC--NLKCLELSDTQVGSSGLRHLSGLTNLES 328
+ NL ++L C + D L TG +L+ L +SDT V GL+ + L L
Sbjct: 294 ARMDNLLGISLKGCPTLSDYSLTPFKTGPIRKSLEELNISDTMVTHIGLQIIVRLKYLRV 353
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNL----DARQITDTGLAALTSLTGLTHLDLFGARI 384
+++S DG ++ L+ L+SLK L + + +DT A L AR
Sbjct: 354 LDISRC---DG-IKILSPLNSLKYLEVLRLSNVHVNSDTLQDAFRIPPKYLQQLLVDARP 409
Query: 385 TDSG--AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
D F NL S+ + +T GV+ ++ + L ++ S+ ++ D+ E +S
Sbjct: 410 IDDPLLTVICSKFPNLVSVNLKESQITSRGVEALQMVKYLRYVDFSKT-SVDDQVFEYLS 468
Query: 443 GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 480
+T L +++ I+ G+ L+PL+ LR L CK
Sbjct: 469 KITSLETISFEECQNISGEGVHVLEPLRGLRVLNFNGCK 507
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 149/327 (45%), Gaps = 20/327 (6%)
Query: 175 PLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
P+SG+ S Q S+++ S G YL G L L L VT LD L+ + +L +
Sbjct: 247 PISGV----SAQTPLSQLSPSDGFIYLAGCNSLRYLYLNESEVTNYHLDVLARMDNLLGI 302
Query: 234 NLNRCQ-LSDDGCEKFSKIG----SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
+L C LSD F K G SL+ LN+ +T L + L L L++ C
Sbjct: 303 SLKGCPTLSDYSLTPF-KTGPIRKSLEELNISDTMVTHIGLQIIVRLKYLRVLDISRCD- 360
Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN--LESINLSFTGISDGSLRKL-A 345
G + L L L L+ L LS+ V S L+ + L+ + + I D L + +
Sbjct: 361 GIKILSPLNSLKYLEVLRLSNVHVNSDTLQDAFRIPPKYLQQLLVDARPIDDPLLTVICS 420
Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR--SLEI 403
+L S+NL QIT G+ AL + L ++D + D YL +L S E
Sbjct: 421 KFPNLVSVNLKESQITSRGVEALQMVKYLRYVDFSKTSVDDQVFEYLSKITSLETISFEE 480
Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS-RITSAGL 462
C ++ GV ++ L L +LN + N ++ +L+ + L+ + +L VS + +I
Sbjct: 481 C-QNISGEGVHVLEPLRGLRVLNFNGCKNFSEYSLKEMEDLS-VETLRVSGANQIGMEAW 538
Query: 463 RHLKPLKNLRSLTLESCKVTANDIKRL 489
+++ ++ L+ L L V N I+ +
Sbjct: 539 KYIAQIEQLKRLDLSFTNVEDNGIQEM 565
>gi|300867094|ref|ZP_07111761.1| Leucine Rich Repeat domain protein (fragment) [Oscillatoria sp. PCC
6506]
gi|300334925|emb|CBN56927.1| Leucine Rich Repeat domain protein (fragment) [Oscillatoria sp. PCC
6506]
Length = 334
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 136/282 (48%), Gaps = 46/282 (16%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
+ LS+LT+L + NN I+ +K L NL LDL + ++K L L LN+
Sbjct: 81 QTLSSLTAL-YLYNNQIS--DLKPLQSLTNLTWLDLN-----DNQISDIKPLQSLTKLNV 132
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
+ SD+KPL LTNL SL + +K++D +K L+ LT L+L
Sbjct: 133 LILHSNKISDIKPLESLTNLTSLSLYSNKISD-----IKPLESLTNLDL----------- 176
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
L L+ ++SD + + L +L L N+I D + L+ LTNL SL+
Sbjct: 177 ----------LELHNNKISD--IKPLQSLTKLNLLQLHNNQIGD--IKPLQSLTNLTSLS 222
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
L S I D L L L NL L+LS+ ++ S ++ L LT L ++LS ISD +
Sbjct: 223 LYSNKISDITL--LQSLTNLTILDLSNNKI--SDIKPLEFLTKLNILDLSNNKISD--IE 276
Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
L L+ L L L QI+D + L SLT L L L G I
Sbjct: 277 PLQSLTKLTILYLYNNQISD--IKTLKSLTKLMLLYLGGNSI 316
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 131/249 (52%), Gaps = 24/249 (9%)
Query: 245 CEKFSK-IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303
CE ++ + SL L L N+I+D L L+ LTNL L+L+ I D + L L L
Sbjct: 76 CEAANQTLSSLTALYLYNNQISD--LKPLQSLTNLTWLDLNDNQISD--IKPLQSLTKLN 131
Query: 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363
L L ++ S ++ L LTNL S++L ISD ++ L L++L L L +I+D
Sbjct: 132 VLILHSNKI--SDIKPLESLTNLTSLSLYSNKISD--IKPLESLTNLDLLELHNNKISD- 186
Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
+ L SLT L L L +I D L++ NL SL + ++D + ++ L++LT
Sbjct: 187 -IKPLQSLTKLNLLQLHNNQIGDIKP--LQSLTNLTSLSLYSNKISDITL--LQSLTNLT 241
Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT-LESCKVT 482
+L+LS N K LE LT L L++SN++I+ ++PL++L LT L
Sbjct: 242 ILDLSNNKISDIKPLEF---LTKLNILDLSNNKISD-----IEPLQSLTKLTILYLYNNQ 293
Query: 483 ANDIKRLQS 491
+DIK L+S
Sbjct: 294 ISDIKTLKS 302
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 109/213 (51%), Gaps = 23/213 (10%)
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
LE C ++ L +LT L L + Q+ S L+ L LTNL ++L+ IS
Sbjct: 68 LEKAETTECEAANQTLSSLTALY------LYNNQI--SDLKPLQSLTNLTWLDLNDNQIS 119
Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
D ++ L L+ L L L + +I+D + L SLT LT L L+ +I+D L + N
Sbjct: 120 D--IKPLQSLTKLNVLILHSNKISD--IKPLESLTNLTSLSLYSNKISDIKP--LESLTN 173
Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457
L LE+ ++D IK L SLT LNL Q N ++ + LT L SL++ +++I
Sbjct: 174 LDLLELHNNKISD-----IKPLQSLTKLNLLQLHNNQIGDIKPLQSLTNLTSLSLYSNKI 228
Query: 458 TSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 490
+ L L+ L NL L L + K++ DIK L+
Sbjct: 229 SDITL--LQSLTNLTILDLSNNKIS--DIKPLE 257
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 109/230 (47%), Gaps = 30/230 (13%)
Query: 76 HLKDCSNLQSL-DFNFCI----QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
+ D LQSL N I +ISD ++ L L+NLTSLS N +K L
Sbjct: 117 QISDIKPLQSLTKLNVLILHSNKISD--IKPLESLTNLTSLSLYSNK---ISDIKPLESL 171
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
NL L+L + + ++K L L LN+ + D+KPL LTNL SL + +
Sbjct: 172 TNLDLLELH-----NNKISDIKPLQSLTKLNLLQLHNNQIGDIKPLQSLTNLTSLSLYSN 226
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
K++D I L+ L LT+L+L ++ + L L L L+L+ ++SD E
Sbjct: 227 KISD--ITLLQSLTNLTILDLSNNKISD--IKPLEFLTKLNILDLSNNKISD--IEPLQS 280
Query: 251 IGSLKVLNLGFNEITDECLVHLKGLTNL-------ESLNLDSCGIGDEGL 293
+ L +L L N+I+D + LK LT L S++ +C + E +
Sbjct: 281 LTKLTILYLYNNQISD--IKTLKSLTKLMLLYLGGNSIDTKTCPLSPESI 328
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.136 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,040,925,268
Number of Sequences: 23463169
Number of extensions: 279103345
Number of successful extensions: 915987
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5402
Number of HSP's successfully gapped in prelim test: 18145
Number of HSP's that attempted gapping in prelim test: 730891
Number of HSP's gapped (non-prelim): 99753
length of query: 503
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 356
effective length of database: 8,910,109,524
effective search space: 3171998990544
effective search space used: 3171998990544
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 79 (35.0 bits)