BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010711
(503 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 129/264 (48%), Gaps = 31/264 (11%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+D + L L+NLT L+ NN IT + L NL +L+L T + L
Sbjct: 96 QIAD--ITPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALS 148
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXE 212
GL L+ LN + N +TD +KPL+ LT L+ L IS +KV+D + E
Sbjct: 149 GLTSLQQLN--FGNQVTD--LKPLANLTTLERLDISSNKVSDISV-------LAKLTNLE 197
Query: 213 GCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
T + ++ LG +L L+LN QL D G + + +L L+L N+I++ L
Sbjct: 198 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--L 253
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL +
Sbjct: 254 APLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYL 309
Query: 330 NLSFTGISDGSLRKLAGLSSLKSL 353
L F ISD + ++ L+ L+ L
Sbjct: 310 TLYFNNISD--ISPVSSLTKLQRL 331
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
LKD L SL + +++ + +L LS LT L+ + A + AGL L
Sbjct: 227 QLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 286
Query: 136 LDL-ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L+L E + NLK L L + N I SD+ P+S LT L+ L S +KV+D
Sbjct: 287 LELNENQLEDISPISNLKNLTYLT----LYFNNI--SDISPVSSLTKLQRLFFSNNKVSD 340
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 129/264 (48%), Gaps = 31/264 (11%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+D + L L+NLT L+ NN IT + L NL +L+L T + L
Sbjct: 96 QIAD--ITPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALS 148
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXE 212
GL L+ LN + N +TD +KPL+ LT L+ L IS +KV+D + E
Sbjct: 149 GLTSLQQLN--FGNQVTD--LKPLANLTTLERLDISSNKVSDISV-------LAKLTNLE 197
Query: 213 GCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
T + ++ LG +L L+LN QL D G + + +L L+L N+I++ L
Sbjct: 198 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--L 253
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL +
Sbjct: 254 APLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYL 309
Query: 330 NLSFTGISDGSLRKLAGLSSLKSL 353
L F ISD + ++ L+ L+ L
Sbjct: 310 TLYFNNISD--ISPVSSLTKLQRL 331
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
LKD L SL + +++ + +L LS LT L+ + A + AGL L
Sbjct: 227 QLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 286
Query: 136 LDL-ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L+L E + NLK L L + N I SD+ P+S LT L+ L +KV+D
Sbjct: 287 LELNENQLEDISPISNLKNLTYLT----LYFNNI--SDISPVSSLTKLQRLFFYNNKVSD 340
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 128/264 (48%), Gaps = 31/264 (11%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+D + L L+NLT L+ NN IT + L NL +L+L T + L
Sbjct: 101 QIAD--ITPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALS 153
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXE 212
GL L+ L + N +TD +KPL+ LT L+ L IS +KV+D + E
Sbjct: 154 GLTSLQQL--SFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-------LAKLTNLE 202
Query: 213 GCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
T + ++ LG +L L+LN QL D G + + +L L+L N+I++ L
Sbjct: 203 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--L 258
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL +
Sbjct: 259 APLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYL 314
Query: 330 NLSFTGISDGSLRKLAGLSSLKSL 353
L F ISD + ++ L+ L+ L
Sbjct: 315 TLYFNNISD--ISPVSSLTKLQRL 336
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
LKD L SL + +++ + +L LS LT L+ + A + AGL L
Sbjct: 232 QLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 291
Query: 136 LDL-ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L+L E + NLK L L + N I SD+ P+S LT L+ L +KV+D
Sbjct: 292 LELNENQLEDISPISNLKNLTYLT----LYFNNI--SDISPVSSLTKLQRLFFYNNKVSD 345
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 128/264 (48%), Gaps = 31/264 (11%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+D + L L+NLT L+ NN IT + L NL +L+L T + L
Sbjct: 100 QIAD--ITPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALS 152
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXE 212
GL L+ L + N +TD +KPL+ LT L+ L IS +KV+D + E
Sbjct: 153 GLTSLQQL--SFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-------LAKLTNLE 201
Query: 213 GCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
T + ++ LG +L L+LN QL D G + + +L L+L N+I++ L
Sbjct: 202 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--L 257
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL +
Sbjct: 258 APLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYL 313
Query: 330 NLSFTGISDGSLRKLAGLSSLKSL 353
L F ISD + ++ L+ L+ L
Sbjct: 314 TLYFNNISD--ISPVSSLTKLQRL 335
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
LKD L SL + +++ + +L LS LT L+ + A + AGL L
Sbjct: 231 QLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 290
Query: 136 LDL-ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L+L E + NLK L L + N I SD+ P+S LT L+ L + +KV+D
Sbjct: 291 LELNENQLEDISPISNLKNLTYLT----LYFNNI--SDISPVSSLTKLQRLFFANNKVSD 344
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 127/271 (46%), Gaps = 45/271 (16%)
Query: 92 IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
I S+ L + L NLT L NN I + A L NL L T + +
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGL-----TLFNNQIT 120
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXX 209
++ L L +LN + T SD+ LSGLT+L+ L S ++VTD
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTD--------------- 165
Query: 210 XXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
L L+ L +L L+++ ++SD +K+ +L+ L N+I+D +
Sbjct: 166 -----------LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--I 210
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
L LTNL+ L+L+ + D G L L NL L+L++ Q+ S L LSGLT L +
Sbjct: 211 TPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPLSGLTKLTEL 266
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
L IS+ + LAGL++L +L L+ Q+
Sbjct: 267 KLGANQISN--ISPLAGLTALTNLELNENQL 295
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
LKD L SL + +++ + +L LS LT L+ + A + AGL L
Sbjct: 228 QLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 287
Query: 136 LDL-ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L+L E + NLK L L + N I SD+ P+S LT L+ L +KV+D
Sbjct: 288 LELNENQLEDISPISNLKNLTYLT----LYFNNI--SDISPVSSLTKLQRLFFYNNKVSD 341
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 127/271 (46%), Gaps = 45/271 (16%)
Query: 92 IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
I S+ L + L NLT L NN I + A L NL L L + +
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGLTL-----FNNQIT 120
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXX 209
++ L L +LN + T SD+ LSGLT+L+ L S ++VTD
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTD--------------- 165
Query: 210 XXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
L L+ L +L L+++ ++SD +K+ +L+ L N+I+D +
Sbjct: 166 -----------LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--I 210
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
L LTNL+ L+L+ + D G L L NL L+L++ Q+ S L LSGLT L +
Sbjct: 211 TPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPLSGLTKLTEL 266
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
L IS+ + LAGL++L +L L+ Q+
Sbjct: 267 KLGANQISN--ISPLAGLTALTNLELNENQL 295
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
LKD L SL + +++ + +L LS LT L+ + A + AGL L
Sbjct: 228 QLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 287
Query: 136 LDL-ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L+L E + NLK L L + N I SD+ P+S LT L+ L S +KV+D
Sbjct: 288 LELNENQLEDISPISNLKNLTYLT----LYFNNI--SDISPVSSLTKLQRLFFSNNKVSD 341
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 127/271 (46%), Gaps = 45/271 (16%)
Query: 92 IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
I S+ L + L NLT L NN I + A L NL L L + +
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGLTL-----FNNQIT 120
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXX 209
++ L L +LN + T SD+ LSGLT+L+ L S ++VTD
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTD--------------- 165
Query: 210 XXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
L L+ L +L L+++ ++SD +K+ +L+ L N+I+D +
Sbjct: 166 -----------LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--I 210
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
L LTNL+ L+L+ + D G L L NL L+L++ Q+ S L LSGLT L +
Sbjct: 211 TPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPLSGLTKLTEL 266
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
L IS+ + LAGL++L +L L+ Q+
Sbjct: 267 KLGANQISN--ISPLAGLTALTNLELNENQL 295
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
LKD L SL + +++ + +L LS LT L+ + A + AGL L
Sbjct: 228 QLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 287
Query: 136 LDL-ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L+L E + NLK L L + N I SD+ P+S LT L+ L +KV+D
Sbjct: 288 LELNENQLEDISPISNLKNLTYLT----LYFNNI--SDISPVSSLTKLQRLFFYNNKVSD 341
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 90/303 (29%), Positives = 136/303 (44%), Gaps = 47/303 (15%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDL 138
+NL+ L+ N QI+D + LSNL L+ + N IT + A L NL +L L
Sbjct: 66 TNLEYLNLNGN-QITD-----ISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYL 117
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGI 197
+ L L K SLN+ + + SD+ PLS T L L ++ SKV D + I
Sbjct: 118 NEDNI--SDISPLANLTKXYSLNLGANHNL--SDLSPLSNXTGLNYLTVTESKVKDVTPI 173
Query: 198 AYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKV 256
A + ++ L++L SL Y Q++D +++ SLK+
Sbjct: 174 ANLTDLYSLSLNYNQIEDISP-----LASLTSLHYFTAYVNQITDITPVANXTRLNSLKI 228
Query: 257 -------------------LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
L +G N+I+D V K LT L+ LN+ S I D ++N
Sbjct: 229 GNNKITDLSPLANLSQLTWLEIGTNQISDINAV--KDLTKLKXLNVGSNQISDISVLN-- 284
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
L L L L++ Q+G+ + GLTNL ++ LS I+D +R LA LS S + A
Sbjct: 285 NLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITD--IRPLASLSKXDSADF-A 341
Query: 358 RQI 360
Q+
Sbjct: 342 NQV 344
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 106/262 (40%), Gaps = 56/262 (21%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD---- 194
E+ I G ++ L LE LN+ N ITD + PLS L L +L I +K+TD
Sbjct: 54 EKVASIQG----IEYLTNLEYLNLN-GNQITD--ISPLSNLVKLTNLYIGTNKITDISAL 106
Query: 195 ----------------SGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRC 238
S I+ G + L LS L YL +
Sbjct: 107 QNLTNLRELYLNEDNISDISPLANLTKXYSLNL-GANHNLSDLSPLSNXTGLNYLTVTES 165
Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN---------------- 282
++ D + + L L+L +N+I D + L LT+L
Sbjct: 166 KVKD--VTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITPVANXT 221
Query: 283 -LDSCGIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
L+S IG+ + +L+ L NL LE+ Q+ S + + LT L+ +N+ ISD
Sbjct: 222 RLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQI--SDINAVKDLTKLKXLNVGSNQISD 279
Query: 339 GSLRKLAGLSSLKSLNLDARQI 360
S+ L LS L SL L+ Q+
Sbjct: 280 ISV--LNNLSQLNSLFLNNNQL 299
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 111/290 (38%), Gaps = 67/290 (23%)
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
F N I + GL N+ L+L+R ++L L K++ + +W C+ +
Sbjct: 278 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS--ISLASLPKIDDFSFQWLKCLEHLN 335
Query: 173 MK----P------LSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLD 222
M+ P +GL NLK L +S S + + T
Sbjct: 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL-------------------TNETFV 376
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTN---- 277
SL A L LNL + ++S + FS +G L+VL+LG NEI E +GL N
Sbjct: 377 SL-AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 435
Query: 278 --------------------LESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSS 315
L+ L L + D L NL L+LS+ + +
Sbjct: 436 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 495
Query: 316 GLRHLSGLTNLESINLSFTGISD--------GSLRKLAGLSSLKSLNLDA 357
L GL LE ++L ++ G + L GLS L LNL++
Sbjct: 496 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 111/290 (38%), Gaps = 67/290 (23%)
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
F N I + GL N+ L+L+R ++L L K++ + +W C+ +
Sbjct: 283 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS--ISLASLPKIDDFSFQWLKCLEHLN 340
Query: 173 MK----P------LSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLD 222
M+ P +GL NLK L +S S + + T
Sbjct: 341 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL-------------------TNETFV 381
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTN---- 277
SL A L LNL + ++S + FS +G L+VL+LG NEI E +GL N
Sbjct: 382 SL-AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 440
Query: 278 --------------------LESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSS 315
L+ L L + D L NL L+LS+ + +
Sbjct: 441 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 500
Query: 316 GLRHLSGLTNLESINLSFTGISD--------GSLRKLAGLSSLKSLNLDA 357
L GL LE ++L ++ G + L GLS L LNL++
Sbjct: 501 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 550
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 111/290 (38%), Gaps = 67/290 (23%)
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
F N I + GL N+ L+L+R ++L L K++ + +W C+ +
Sbjct: 288 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS--ISLASLPKIDDFSFQWLKCLEHLN 345
Query: 173 MK----P------LSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLD 222
M+ P +GL NLK L +S S + + T
Sbjct: 346 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL-------------------TNETFV 386
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTN---- 277
SL A L LNL + ++S + FS +G L+VL+LG NEI E +GL N
Sbjct: 387 SL-AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 445
Query: 278 --------------------LESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSS 315
L+ L L + D L NL L+LS+ + +
Sbjct: 446 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 505
Query: 316 GLRHLSGLTNLESINLSFTGISD--------GSLRKLAGLSSLKSLNLDA 357
L GL LE ++L ++ G + L GLS L LNL++
Sbjct: 506 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 555
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 93/194 (47%), Gaps = 19/194 (9%)
Query: 170 DSDMKPLSG---LTNLKSLQISCSKVTD-SGIAYXXXXXXXXXXXXEGCPVTAACLDSLS 225
+SD+K + G L NL SL +S +++TD S I Y + + L +L
Sbjct: 53 NSDIKSVQGIQYLPNLTSLNLSNNQITDISPIQYLPNVTKLFLNGNKLTDIKP--LANLK 110
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
LG LF L+ N+ + + N G ++I LVHL LESL L +
Sbjct: 111 NLGWLF-LDENKVKDLSSLKDLKKLKSLSLEHN-GISDIN--GLVHLP---QLESLYLGN 163
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
I D + L+ L L L L D Q+ S + L+GLT L+++ LS ISD LR LA
Sbjct: 164 NKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHISD--LRALA 217
Query: 346 GLSSLKSLNLDARQ 359
GL +L L L +++
Sbjct: 218 GLKNLDVLELFSQE 231
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 106/265 (40%), Gaps = 44/265 (16%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
L NL +L R +N + + F GL NL KLD+ +V L M + N+K
Sbjct: 79 LFNLRTLGLR-SNRLKLIPLGVFTGLSNLTKLDISE-----NKIVILLDYMFQDLYNLKS 132
Query: 165 CNCITDSDM-----KPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAA 219
+ D+D+ + SGL +L+ L + E C +T+
Sbjct: 133 LE-VGDNDLVYISHRAFSGLNSLEQLTL------------------------EKCNLTSI 167
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG----FNEITDECLVHLKGL 275
++LS L L L L ++ F ++ LKVL + + +T CL L
Sbjct: 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL--- 224
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
NL SL++ C + + + L L+ L LS + + L L L+ I L
Sbjct: 225 -NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQI 360
++ GL+ L+ LN+ Q+
Sbjct: 284 LAVVEPYAFRGLNYLRVLNVSGNQL 308
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
D ++ L L LN +S F+ + +L+ L L N + L GL+NL L
Sbjct: 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109
Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL---SFTGISD 338
++ I L NLK LE+ D + R SGL +LE + L + T I
Sbjct: 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169
Query: 339 GSLRKLAGLS--SLKSLNLDA 357
+L L GL L+ LN++A
Sbjct: 170 EALSHLHGLIVLRLRHLNINA 190
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 120/323 (37%), Gaps = 69/323 (21%)
Query: 80 CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
+NL LD ++ + D G L +L LS NN I ++F GL NL L L+
Sbjct: 247 WTNLTQLDLSYN-NLHDVGNGSFSYLPSLRYLSLEYNN-IQRLSPRSFYGLSNLRYLSLK 304
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWC----------NCITDSDMKPLSGLTNLKSLQISC 189
R V+L ++ + +W N I + +GL +LK L +S
Sbjct: 305 RAFTKQS--VSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSK 362
Query: 190 SKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+ + + T SL A L LNL + +S FS
Sbjct: 363 TFTSLQTL-------------------TNETFVSL-AHSPLLTLNLTKNHISKIANGTFS 402
Query: 250 KIGSLKVLNLGFNEITDECL-VHLKGLTNL--------ESLNLDSCGIG----------- 289
+G L++L+LG NEI + +GL N+ + L L +
Sbjct: 403 WLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLR 462
Query: 290 -------DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD---- 338
D L NL L+LS+ + + L GL NLE ++ ++
Sbjct: 463 RVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKR 522
Query: 339 ----GSLRKLAGLSSLKSLNLDA 357
G + L GLS L LNL++
Sbjct: 523 ANPGGPVNFLKGLSHLHILNLES 545
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS---CGIG 289
LNL QL F++ L +L+ GFN I+ + L L+ LNL I
Sbjct: 30 LNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQIS 89
Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
D+ V T L L + S ++ S+ ++ L L+ LS G+S L
Sbjct: 90 DQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLD---LSHNGLSSTKL 138
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
LVHL LESL L + I D + L+ L L L L D Q+ S + L+GLT L++
Sbjct: 127 LVHL---PQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQN 179
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
+ LS ISD LR LAGL +L L L +++
Sbjct: 180 LYLSKNHISD--LRALAGLKNLDVLELFSQE 208
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 248 FSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
F+++ SL+ L+LG + +GL NL LNL C + D + NLT L L+ LE
Sbjct: 127 FNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD--IPNLTALVRLEELE 184
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
LS ++ GLT+L + L ++ L SL+ LNL
Sbjct: 185 LSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNL 233
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
LVHL LESL L + I D + L+ L L L L D Q+ S + L+GLT L++
Sbjct: 130 LVHLP---QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQN 182
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
+ LS ISD LR LAGL +L L L +++
Sbjct: 183 LYLSKNHISD--LRALAGLKNLDVLELFSQE 211
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 12/183 (6%)
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL---ERCTRIH 145
N+ I G E+L L L + RNN I + AF + +L++LDL ++ I
Sbjct: 133 NWLTVIPSGAFEYLSKLREL----WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXX 205
G +GL L+ LN+ CN DM L+ L L+ L++S + +
Sbjct: 189 EGA--FEGLFNLKYLNLGMCNI---KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSS 243
Query: 206 XXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
V+ ++ L SL LNL LS + F+ + L L+L N
Sbjct: 244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303
Query: 266 DEC 268
+C
Sbjct: 304 CDC 306
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 12/144 (8%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG----FNEITDECLVH 271
+ + + LS L L+ L + F+++ SL L+LG I++
Sbjct: 138 IPSGAFEYLSKLRELW---LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF-- 192
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
+GL NL+ LNL C I D + NLT L L+ LE+S GL++L+ + +
Sbjct: 193 -EGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249
Query: 332 SFTGISDGSLRKLAGLSSLKSLNL 355
+ +S GL+SL LNL
Sbjct: 250 MNSQVSLIERNAFDGLASLVELNL 273
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
LVHL LESL L + I D + L+ L L L L D Q+ S + L+GLT L++
Sbjct: 128 LVHLP---QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQN 180
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
+ LS ISD LR LAGL +L L L +++
Sbjct: 181 LYLSKNHISD--LRALAGLKNLDVLELFSQE 209
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
LVHL LESL L + I D + L+ L L L L D Q+ S + L+GLT L++
Sbjct: 130 LVHLP---QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQN 182
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
+ LS ISD LR LAGL +L L L +++
Sbjct: 183 LYLSKNHISD--LRALAGLKNLDVLELFSQE 211
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 248 FSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
F+++ SL+ L+LG + +GL NL LNL C + D + NLT L L+ LE
Sbjct: 127 FNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD--IPNLTALVRLEELE 184
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
LS ++ GLT+L + L ++ L SL+ LNL
Sbjct: 185 LSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNL 233
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
LVHL LESL L + I D + L+ L L L L D Q+ S + L+GLT L++
Sbjct: 125 LVHLP---QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQN 177
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
+ LS ISD LR LAGL +L L L +++
Sbjct: 178 LYLSKNHISD--LRALAGLKNLDVLELFSQE 206
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
LVHL LESL L + I D + L+ L L L L D Q+ S + L+GLT L++
Sbjct: 148 LVHLP---QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQN 200
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
+ LS ISD LR LAGL +L L L +++
Sbjct: 201 LYLSKNHISD--LRALAGLKNLDVLELFSQE 229
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
LVHL LESL L + I D + L+ L L L L D Q+ S + L+GLT L++
Sbjct: 148 LVHLP---QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQN 200
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
+ LS ISD LR LAGL +L L L +++
Sbjct: 201 LYLSKNHISD--LRALAGLKNLDVLELFSQE 229
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
LVHL LESL L + I D + L+ L L L L D Q+ S + L+GLT L++
Sbjct: 148 LVHLP---QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQN 200
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
+ LS ISD LR LAGL +L L L +++
Sbjct: 201 LYLSKNHISD--LRALAGLKNLDVLELFSQE 229
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 88/205 (42%), Gaps = 30/205 (14%)
Query: 77 LKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
L+ NLQ+LD + I+ SD L+ LS+L +L+ N + Q +AF L
Sbjct: 343 LEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQS-QAFKECPQLEL 401
Query: 136 LDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
LDL TR+H + L L+ LN+ +C + S+ L+GL L+ L + +
Sbjct: 402 LDL-AFTRLHINAPQSPFQNLHFLQVLNLTYC-FLDTSNQHLLAGLPVLRHLNLKGNHFQ 459
Query: 194 DSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
D I + L +GSL L L+ C L + F +G
Sbjct: 460 DGTITKT---------------------NLLQTVGSLEVLILSSCGLLSIDQQAFHSLGK 498
Query: 254 LKVLNLGFNEIT---DECLVHLKGL 275
+ ++L N +T + L HLKG+
Sbjct: 499 MSHVDLSHNSLTCDSIDSLSHLKGI 523
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 104/241 (43%), Gaps = 44/241 (18%)
Query: 151 LKGL--MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-----SGIAYXXXX 203
LKGL M +ESLN++ + +D T L+ L ++ + + G+
Sbjct: 245 LKGLCEMSVESLNLQE-HRFSDISSTTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKL 303
Query: 204 XXXXXXXXEGCPVTAACLDSLSALGSLFYL--NLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
+ C ++AA SL+ L Y+ N+ + L GC K+G+L+ L+L
Sbjct: 304 VLSVNHFDQLCQISAANFPSLTHL----YIRGNVKKLHLGV-GC--LEKLGNLQTLDLSH 356
Query: 262 NEI--TDECLVHLKGLTNLESLNL---DSCGIGDEGL-----------------VN---- 295
N+I +D C + LK L++L++LNL + G+ + +N
Sbjct: 357 NDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQS 416
Query: 296 -LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
L L+ L L+ + +S L+GL L +NL DG++ K L ++ SL
Sbjct: 417 PFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLE 476
Query: 355 L 355
+
Sbjct: 477 V 477
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 10/102 (9%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+D L L+ L+ +T L N + + A AGL ++ LDL T+I + L
Sbjct: 74 QITD--LAPLKNLTKITELELSGN---PLKNVSAIAGLQSIKTLDL-TSTQITD-VTPLA 126
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
GL L+ L + N IT+ + PL+GLTNL+ L I ++V+D
Sbjct: 127 GLSNLQVLYLD-LNQITN--ISPLAGLTNLQYLSIGNAQVSD 165
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 12/103 (11%)
Query: 260 GFNEITDECL-VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGL 317
G + +TD L G+T L + G G + + L NL LEL D Q+ + L
Sbjct: 27 GKSNVTDTVTQADLDGITTLSAF-----GTGVTTIEGVQYLNNLIGLELKDNQITDLAPL 81
Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
++L+ +T LE +G ++ +AGL S+K+L+L + QI
Sbjct: 82 KNLTKITELE-----LSGNPLKNVSAIAGLQSIKTLDLTSTQI 119
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 85/198 (42%), Gaps = 37/198 (18%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL-- 133
+ D + L++L +++S L+++ ++ L S+ + + AGL NL
Sbjct: 74 QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+ LDL + T I L GL L+ L+I SD+ PL+ L+ L +L+ +K++
Sbjct: 134 LYLDLNQITNISP----LAGLTNLQYLSIGNAQV---SDLTPLANLSKLTTLKADDNKIS 186
Query: 194 DSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
D + L++L +L ++L Q+SD + +
Sbjct: 187 D--------------------------ISPLASLPNLIEVHLKNNQISD--VSPLANTSN 218
Query: 254 LKVLNLGFNEITDECLVH 271
L ++ L IT++ + +
Sbjct: 219 LFIVTLTNQTITNQPVFY 236
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 10/102 (9%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+D L L+ L+ +T L N + + A AGL ++ LDL T+I ++
Sbjct: 80 QITD--LTPLKNLTKITELELSGN---PLKNVSAIAGLQSIKTLDL-TSTQI----TDVT 129
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L L +L + + + +++ PL+GLTNL+ L I ++V D
Sbjct: 130 PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNNQVND 171
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 12/103 (11%)
Query: 260 GFNEITDECL-VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGL 317
G + +TD L G+ L + N I EG+ L NL LEL D Q+ + L
Sbjct: 33 GKSNVTDAVTQADLDGIATLSAFNTGVTTI--EGI---QYLNNLIGLELKDNQITDLTPL 87
Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
++L+ +T LE +G ++ +AGL S+K+L+L + QI
Sbjct: 88 KNLTKITELE-----LSGNPLKNVSAIAGLQSIKTLDLTSTQI 125
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
F + LKVLNL +N+I GL NL+ LNL +G+ N GL + ++L
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345
Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
+ + L L++++L D +L + + S+ + L ++
Sbjct: 346 QKNHIAIIQDQTFKFLEKLQTLDL-----RDNALTTIHFIPSIPDIFLSGNKL 393
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR--KLA 345
I E NL NL+ L+L +++ GL +L + L F G+SD L+
Sbjct: 64 IDKEAFRNLP---NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120
Query: 346 GLSSLKSLNLDARQI 360
L +L L+L QI
Sbjct: 121 NLKALTRLDLSKNQI 135
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 5/116 (4%)
Query: 248 FSKIGSLKVLNLGFN---EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
F+ + L+ L+L N D H GL L +L+LD CG+ + G GL L+
Sbjct: 76 FTGLALLEQLDLSDNAQLRSVDPATFH--GLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133
Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
L L D + + L NL + L IS R GL SL L L ++
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 58/141 (41%), Gaps = 5/141 (3%)
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN---EITDECLVHLKGLTNLE 279
S A +L L L+ L+ F+ + L+ L+L N D H GL L
Sbjct: 50 SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH--GLGRLH 107
Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
+L+LD CG+ + G GL L+ L L D + + L NL + L IS
Sbjct: 108 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 167
Query: 340 SLRKLAGLSSLKSLNLDARQI 360
R GL SL L L ++
Sbjct: 168 PERAFRGLHSLDRLLLHQNRV 188
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 122/282 (43%), Gaps = 63/282 (22%)
Query: 233 LNLNRCQLSDDGCEKFSKI----GSLKVLNLGFNEITDECL-VHLKGLTN----LESLNL 283
+ L+ C L++ C+ S +L L+L NE+ D + + L+GL N ++ L+L
Sbjct: 29 VRLDDCGLTEVRCKDISSAVQANPALTELSLRTNELGDGGVGLVLQGLQNPTCKIQKLSL 88
Query: 284 DSCGIGDEGLVNLTG----LCNLKCLELSDTQVGSSGLRHL-SGLTN----LESINLSFT 334
+CG+ + G L G L L+ L L+D +G +GL+ L GL + LE + L +
Sbjct: 89 QNCGLTEAGCGILPGMLRSLSTLRELHLNDNPMGDAGLKLLCEGLQDPQCRLEKLQLEYC 148
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQIXXXXXXXXXXXXXXXXXDLF--GARITDSGAAYL 392
++ S LA + +K+ D +++ DL G RI G
Sbjct: 149 NLTATSCEPLASVLRVKA---DFKELVLSNN------------DLHEPGVRILCQGLK-- 191
Query: 393 RNFKNLRSLEICGGGLTDAGVKHIKDXXXXXXXXXXXXXXXTDKTLELISGLTGLVSLNV 452
+ L SL++ G+T A K + D +++ L L++
Sbjct: 192 DSACQLESLKLENCGITAANCKDLCD---------------------VVASKASLQELDL 230
Query: 453 SNSRITSAGLRH-----LKPLKNLRSLTLESCKVTANDIKRL 489
S++++ +AG+ L P LR+L L C +TA K L
Sbjct: 231 SSNKLGNAGIAALCPGLLLPSCKLRTLWLWECDITAEGCKDL 272
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 30/143 (20%)
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGC 214
+KLE+ I NC D+ ++ +L+ L +S +K+ ++GIA
Sbjct: 200 LKLENCGITAANCKDLCDV--VASKASLQELDLSSNKLGNAGIA---------------- 241
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI----GSLKVLNLGFNEITDE--- 267
A C L L L L C ++ +GC+ ++ SLK L+L NE+ DE
Sbjct: 242 ---ALCPGLLLPSCKLRTLWLWECDITAEGCKDLCRVLRAKQSLKELSLASNELKDEGAR 298
Query: 268 --CLVHLKGLTNLESLNLDSCGI 288
C L+ LESL + +C +
Sbjct: 299 LLCESLLEPGCQLESLWIKTCSL 321
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 3/134 (2%)
Query: 177 SGLTN-LKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNL 235
SGLT +KSL +S +K+T G + + D+ +LGSL +L+L
Sbjct: 22 SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCGIGDE-GL 293
+ LS F + SLK LNL N + L LTNL++L + + E
Sbjct: 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141
Query: 294 VNLTGLCNLKCLEL 307
++ GL +L LE+
Sbjct: 142 IDFAGLTSLNELEI 155
>pdb|4EZG|A Chain A, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Lmof2365_1307) From Listeria Monocytogenes Str. Li 2 At
1.50 A Resolution
pdb|4EZG|B Chain B, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Lmof2365_1307) From Listeria Monocytogenes Str. Li 2 At
1.50 A Resolution
Length = 197
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 15/132 (11%)
Query: 229 SLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNL---GFNEITDECLVHLKGLTNLESLNLD 284
SL Y+ L ++D G E I L + N+ +N I+ GL+NLE L +
Sbjct: 45 SLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPIS--------GLSNLERLRIX 96
Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRK 343
+ + + NL+GL +L L++S + S L ++ L + SI+LS+ G I+D +
Sbjct: 97 GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD--IXP 154
Query: 344 LAGLSSLKSLNL 355
L L LKSLN+
Sbjct: 155 LKTLPELKSLNI 166
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
+ GLSNL L + +T+ + +GL +L LD+ L + L K+ S++
Sbjct: 84 ISGLSNLERLRIXGKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
+ + IT D+ PL L LKSL I V D
Sbjct: 143 LSYNGAIT--DIXPLKTLPELKSLNIQFDGVHD 173
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLE-SLNIK--WCNCITDSDMKPLSGLTNLKSLQIS 188
N+ + T I +N+ L +E + NIK N I ++ P+SGL+NL+ L+I
Sbjct: 37 NITEAQXNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIX 96
Query: 189 CSKVTDSGIA 198
VT I
Sbjct: 97 GKDVTSDKIP 106
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 3/134 (2%)
Query: 177 SGLTN-LKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNL 235
SGLT +KSL +S +K+T G + + D+ +LGSL +L+L
Sbjct: 48 SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 107
Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCGIGDE-GL 293
+ LS F + SLK LNL N + L LTNL++L + + E
Sbjct: 108 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 167
Query: 294 VNLTGLCNLKCLEL 307
++ GL +L LE+
Sbjct: 168 IDFAGLTSLNELEI 181
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 10/173 (5%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXX 210
++G+ L ++ + N +D+KPL+ L NL L + +KV D
Sbjct: 59 VQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE 118
Query: 211 XEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 270
G + ++ L L L L L +++D S++ L L+L N+I +V
Sbjct: 119 HNGI----SDINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--RRIV 170
Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
L LT L++L L I D L L GL NL LEL + + + H S L
Sbjct: 171 PLARLTKLQNLYLSKNHISD--LRALRGLKNLDVLELFSQEALNKPINHQSNL 221
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 38/86 (44%)
Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
T+LE L L I GL +L L LS +GS R L LE ++LS+
Sbjct: 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357
Query: 335 GISDGSLRKLAGLSSLKSLNLDARQI 360
I + GL +LK L LD Q+
Sbjct: 358 HIRALGDQSFLGLPNLKELALDTNQL 383
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 3/106 (2%)
Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
FS L+ L L NEI GLT+L LNL +G L L+ L+L
Sbjct: 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354
Query: 308 SDTQVGSSGLRHLSGLTNLESINL---SFTGISDGSLRKLAGLSSL 350
S + + G + GL NL+ + L + DG +L L +
Sbjct: 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKI 400
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 228 GSLFYLN-LNRCQLSDDGCEK-----FSKIGSLKVLNLG----FNEITDECLVHLKGLTN 277
G+ YL+ L L ++ E F++I SL+ L+LG + I++ +GL+N
Sbjct: 130 GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF---EGLSN 186
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
L LNL C + + + NLT L L L+LS + + GL +L+ + + + I
Sbjct: 187 LRYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244
Query: 338 DGSLRKLAGLSSLKSLNL 355
L SL +NL
Sbjct: 245 VIERNAFDNLQSLVEINL 262
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 11/107 (10%)
Query: 81 SNLQSLDF--NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
+NL +L+ N I +G +L L L + RNN I + AF + +L +LDL
Sbjct: 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKEL----WLRNNPIESIPSYAFNRIPSLRRLDL 167
Query: 139 ---ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
+R + I G +GL L LN+ CN ++ PL L L
Sbjct: 168 GELKRLSYISEGA--FEGLSNLRYLNLAMCNLREIPNLTPLIKLDEL 212
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 25/126 (19%)
Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD---TQ 311
++LNL N+I + K L +LE L L I + GL NL LEL D T
Sbjct: 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT 126
Query: 312 VGSSGLRHLSGLTNL-------ESI-NLSFTGISD------GSLRKLA--------GLSS 349
+ + +LS L L ESI + +F I G L++L+ GLS+
Sbjct: 127 IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186
Query: 350 LKSLNL 355
L+ LNL
Sbjct: 187 LRYLNL 192
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 37/89 (41%)
Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
+GL +L +L+LD CG+ + G GL L+ L L D + + L NL + L
Sbjct: 100 FRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFL 159
Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQI 360
I GL SL L L +
Sbjct: 160 HGNRIPSVPEHAFRGLHSLDRLLLHQNHV 188
>pdb|3DZE|A Chain A, Crystal Structure Of Bovine Coupling Factor B Bound With
Cadmium
pdb|3E3Z|A Chain A, Crystal Structure Of Bovine Coupling Factor B Bound With
Phenylarsine Oxide
pdb|3E4G|A Chain A, Crystal Structure Of Bovine Coupling Factor B, G28e Mutant
Length = 176
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 20/102 (19%)
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQ 359
++ ++ +D+ + S G H+ GL +E I L I DG L +L+ L +L+ L+
Sbjct: 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121
Query: 360 IXXXXXXXXXXXXXXXXXDLFGARITDSGAAYLRNFKNLRSL 401
I +TD G L +F+NL+ L
Sbjct: 122 ISC-------------------GNVTDKGIIALHHFRNLKYL 144
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-----ISCSKVTDSGI 197
G +++GL +E + + C+ I D ++ LS L NL+ ISC VTD GI
Sbjct: 77 GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 15/75 (20%)
Query: 264 ITDECLVHLKGLTNLE----SLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
I D CL L L NL+ + + SCG + D+G++ L NLK L LSD
Sbjct: 98 IEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSD--------- 148
Query: 319 HLSGLTNLESINLSF 333
L G+ E I +F
Sbjct: 149 -LPGVKEKEKIVQAF 162
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 1/116 (0%)
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXX 209
N GL +LE L+ + N S+ L NL L IS + +
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450
Query: 210 XXEGCPVTAACL-DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
G L D + L +L +L+L++CQL F+ + SL+VLN+ N++
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 75/164 (45%), Gaps = 33/164 (20%)
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKIG--SLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
L SL +L+L+R LS GC S G SLK L+L FN + L GL LE L+
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQ 404
Query: 285 SCGIGDEGLVNLT-GLCNLKCLELSDTQ--VGSSGLRHLSGLTNLESI------------ 329
+ ++ L NL L++S T V +G+ +GL++LE +
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI--FNGLSSLEVLKMAGNSFQENFL 462
Query: 330 --------NLSFTGISDGSLRKLA-----GLSSLKSLNLDARQI 360
NL+F +S L +L+ LSSL+ LN+ + Q+
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 223 SLSALGSLFYLNLNRCQLS--DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
S + L L+L+RC++ +DG + + L L L N I L GL++L+
Sbjct: 47 SFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLS 332
L + + L LK L ++ + S L + S LTNLE ++LS
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
>pdb|3E2J|A Chain A, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|B Chain B, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|C Chain C, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|D Chain D, Crystal Structure Of Bovine Coupling Factor B
Length = 176
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 20/102 (19%)
Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQ 359
++ ++ +D+ + S G H+ GL +E I L I DG L +L+ L +L+ L+
Sbjct: 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121
Query: 360 IXXXXXXXXXXXXXXXXXDLFGARITDSGAAYLRNFKNLRSL 401
I +TD G L +F+NL+ L
Sbjct: 122 ISC-------------------GNVTDKGIIALHHFRNLKYL 144
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-----ISCSKVTDSGI 197
G +++GL +E + + C+ I D ++ LS L NL+ ISC VTD GI
Sbjct: 77 GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 15/75 (20%)
Query: 264 ITDECLVHLKGLTNLE----SLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
I D CL L L NL+ + + SCG + D+G++ L NLK L LSD
Sbjct: 98 IEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSD--------- 148
Query: 319 HLSGLTNLESINLSF 333
L G+ E I +F
Sbjct: 149 -LPGVKEKEKIVQAF 162
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 1/134 (0%)
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
S S L +L+L+RC++ + + + L L L N I GLT+LE+L
Sbjct: 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR-HLSGLTNLESINLSFTGISDGSL 341
+ + L LK L ++ + S L + S LTNL ++LS+ I ++
Sbjct: 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170
Query: 342 RKLAGLSSLKSLNL 355
L L +NL
Sbjct: 171 NDLQFLRENPQVNL 184
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIG--SLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
AL SL YL+L+R LS GC +S +G SL+ L+L FN + GL L+ L+
Sbjct: 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDF 406
Query: 284 DSCGIGD----EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
+ ++L L L + ++T++ G+ GLT+L ++ ++ D
Sbjct: 407 QHSTLKRVTEFSAFLSLEKLLYLD-ISYTNTKIDFDGI--FLGLTSLNTLKMAGNSFKDN 463
Query: 340 SLRK-LAGLSSLKSLNLDARQI 360
+L A ++L L+L Q+
Sbjct: 464 TLSNVFANTTNLTFLDLSKCQL 485
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 1/114 (0%)
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXX 209
N GL +LE L+ + N S+ L NL L IS + +
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450
Query: 210 XXEGCPVTAACL-DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
G L D + L +L +L+L++CQL F+ + SL+VLN+ N
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 223 SLSALGSLFYLNLNRCQLS--DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
S + L L+L+RC++ +DG + + L L L N I L GL++L+
Sbjct: 47 SFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLS 332
L + + L LK L ++ + S L + S LTNLE ++LS
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 1/134 (0%)
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
S S L +L+L+RC++ + + + L L L N I GLT+LE+L
Sbjct: 46 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 105
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR-HLSGLTNLESINLSFTGISDGSL 341
+ + L LK L ++ + S L + S LTNL ++LS+ I ++
Sbjct: 106 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 165
Query: 342 RKLAGLSSLKSLNL 355
L L +NL
Sbjct: 166 NDLQFLRENPQVNL 179
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIG--SLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
AL SL YL+L+R LS GC +S +G SL+ L+L FN + GL L+ L+
Sbjct: 343 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDF 401
Query: 284 DSCGIGD----EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
+ ++L L L + ++T++ G+ GLT+L ++ ++ D
Sbjct: 402 QHSTLKRVTEFSAFLSLEKLLYLD-ISYTNTKIDFDGI--FLGLTSLNTLKMAGNSFKDN 458
Query: 340 SLRK-LAGLSSLKSLNLDARQI 360
+L A ++L L+L Q+
Sbjct: 459 TLSNVFANTTNLTFLDLSKCQL 480
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 73/169 (43%), Gaps = 32/169 (18%)
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI--TDECLVH 271
C + AA SL L Y+ N +L D G K+ +L+ L+L ++I +D C +
Sbjct: 316 CQINAASFPSLRDL----YIKGNMRKL-DLGTRCLEKLENLQKLDLSHSDIEASDCCNLQ 370
Query: 272 LKGLTNLESLNL---DSCGIGDEGL----------VNLTGLCN------------LKCLE 306
LK L +L+ LNL + G+ D+ V T L L+ L
Sbjct: 371 LKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLN 430
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
LS + +S L+GL +L +NL DGS+ K L + SL +
Sbjct: 431 LSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEI 479
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 55/134 (41%)
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
+ S L +L +L+L RCQ++ + F L + L N + L G L+ L
Sbjct: 51 TFSRLINLIFLDLTRCQINWVHEDTFQSHHQLNTIVLTGNPLIFMAETSLTGPKFLKHLF 110
Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342
L GI + + + L NL+ L L + S L NL+ ++ I S +
Sbjct: 111 LTQTGISNLEFIPVHNLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHYISRK 170
Query: 343 KLAGLSSLKSLNLD 356
L +L+L+
Sbjct: 171 DTNSLEQATNLSLN 184
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 85/205 (41%), Gaps = 30/205 (14%)
Query: 77 LKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
L+ NLQ LD + I+ SD L+ L +L L+ N + + +AF L
Sbjct: 345 LEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLED-QAFKECPQLEL 403
Query: 136 LDLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
LD+ T +H + + L L LN+ C + S+ L+GL +L+ L + +
Sbjct: 404 LDVA-FTHLHVKAPHSPFQNLHLLRVLNLSHC-LLDTSNQHLLAGLQDLRHLNLQGNSFQ 461
Query: 194 DSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
D I+ + L +GSL L L+ C L + F + +
Sbjct: 462 DGSISKT---------------------NLLQMVGSLEILILSSCNLLSIDQQAFHGLRN 500
Query: 254 LKVLNLGFNEITD---ECLVHLKGL 275
+ L+L N +T + L HLKGL
Sbjct: 501 VNHLDLSHNSLTGDSMDALSHLKGL 525
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 10/139 (7%)
Query: 129 GLINLVKLDLERCTRIHGGLV----NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
G I+L LDL G++ N GL +LE L+ + N S+ L NL
Sbjct: 395 GTISLKYLDLS-----FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 449
Query: 185 LQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACL-DSLSALGSLFYLNLNRCQLSDD 243
L IS + + G L D + L +L +L+L++CQL
Sbjct: 450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 509
Query: 244 GCEKFSKIGSLKVLNLGFN 262
F+ + SL+VLN+ N
Sbjct: 510 SPTAFNSLSSLQVLNMSHN 528
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 223 SLSALGSLFYLNLNRCQLS--DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
S + L L+L+RC++ +DG + + L L L N I L GL++L+
Sbjct: 71 SFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 128
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLS 332
L + + L LK L ++ + S L + S LTNLE ++LS
Sbjct: 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 181
>pdb|4FS7|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bacova_04585) From Bacteroides Ovatus Atcc 8483
At 1.19 A Resolution
Length = 394
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
+ C++L S+D + ++ + G RG ++L++++F ++ G AF G INL K+
Sbjct: 316 FESCTSLVSIDLPYLVE--EIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKV 371
Query: 137 DLER 140
+L +
Sbjct: 372 ELPK 375
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 1/116 (0%)
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXX 209
N GL +LE L+ + N S+ L NL L IS + +
Sbjct: 96 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 155
Query: 210 XXEGCPVTAACL-DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264
G L D + L +L +L+L++CQL F+ + SL+VLN+ N
Sbjct: 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 116/294 (39%), Gaps = 69/294 (23%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKI----GSLKVLNLGFNEITDECLVHL--KGLTN 277
L L + L+ C L+++ C+ SL L L NE+ D VHL +GL +
Sbjct: 20 LPLLQQYEVVRLDDCGLTEEHCKDIGSALRANPSLTELCLRTNELGDA-GVHLVLQGLQS 78
Query: 278 ----LESLNLDSCGIGDEGL----VNLTGLCNLKCLELSDTQVGSSGLRHL-SGL----T 324
++ L+L +C + + G L L L+ L LSD +G +GLR L GL
Sbjct: 79 PTCKIQKLSLQNCSLTEAGCGVLPSTLRSLPTLRELHLSDNPLGDAGLRLLCEGLLDPQC 138
Query: 325 NLESINLSFTGISDGSLRKLAGL----SSLKSLNLDARQIXXXXXXXXXXXXXXXXXDLF 380
+LE + L + ++ S LA + +LK L + I
Sbjct: 139 HLEKLQLEYCRLTAASCEPLASVLRATRALKELTVSNNDIGEA----------------- 181
Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDXXXXXXXXXXXXXXXTDKTLEL 440
GAR+ G A + L +L + GLT A K + +
Sbjct: 182 GARVLGQGLA--DSACQLETLRLENCGLTPANCKDLCG---------------------I 218
Query: 441 ISGLTGLVSLNVSNSRITSAGLRHL-----KPLKNLRSLTLESCKVTANDIKRL 489
++ L L++ ++ + AG+ L P L++L L C +TA+ + L
Sbjct: 219 VASQASLRELDLGSNGLGDAGIAELCPGLLSPASRLKTLWLWECDITASGCRDL 272
>pdb|1KOH|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 227 LGSLFYLNL--NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-LVHLKGLTNLESLNL 283
+ L LNL NR DD K +LK+LNL NE+ E L +KGL LE L L
Sbjct: 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWL 227
Query: 284 DSCGIGD 290
D + D
Sbjct: 228 DGNSLSD 234
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL---GFNEITDECLV-HLKGLTN 277
DS S+LGSL +L+L+ LS+ F + SL LNL + + + L HL L
Sbjct: 68 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 127
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
L N+D+ + GL L+ LE+ + + S + L + N+
Sbjct: 128 LRVGNMDTFTKIQRK--DFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 174
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 223 SLSALGSLFYLNLNRCQLS--DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
S + L L+L+RC++ +DG + + L L L N I L GL++L+
Sbjct: 47 SFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLS 332
L + + L LK L ++ + S L + S LTNLE ++LS
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL---GFNEITDECLV-HLKGLTN 277
DS S+LGSL +L+L+ LS+ F + SL LNL + + + L HL L
Sbjct: 94 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153
Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326
L N+D+ + GL L+ LE+ + + S + L + N+
Sbjct: 154 LRVGNMDTFTKIQRK--DFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 223 SLSALGSLFYLNLNRCQLS--DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
S + L L+L+RC++ +DG + + L L L N I L GL++L+
Sbjct: 49 SFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 106
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGI 336
L + + L LK L ++ + S L + S LTNLE ++LS I
Sbjct: 107 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 223 SLSALGSLFYLNLNRCQLS--DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
S + L L+L+RC++ +DG + + L L L N I L GL++L+
Sbjct: 48 SFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 105
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLS 332
L + + L LK L ++ + S L + S LTNLE ++LS
Sbjct: 106 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 158
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 223 SLSALGSLFYLNLNRCQLS--DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
S + L L+L+RC++ +DG + + L L L N I L GL++L+
Sbjct: 48 SFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 105
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLS 332
L + + L LK L ++ + S L + S LTNLE ++LS
Sbjct: 106 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 158
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 223 SLSALGSLFYLNLNRCQLS--DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
S + L L+L+RC++ +DG + + L L L N I L GL++L+
Sbjct: 49 SFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 106
Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLS 332
L + + L LK L ++ + S L + S LTNLE ++LS
Sbjct: 107 LVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 159
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 60/149 (40%), Gaps = 9/149 (6%)
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD---EGLVNLTGLCNLKCLELSDTQV 312
+L+L N + L L T L LNLD C + +G + + G L+LS Q+
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLG-----TLDLSHNQL 89
Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIXXXXXXXXXXXX 372
S L L L +++SF ++ L L GL L+ L L ++
Sbjct: 90 QSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148
Query: 373 XXXXXDLFGARITDSGAAYLRNFKNLRSL 401
L ++T+ A L +NL +L
Sbjct: 149 KLEKLSLANNQLTELPAGLLNGLENLDTL 177
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 21/130 (16%)
Query: 221 LDSLSALGSLFYLNLNRCQLSD---DGCEKF------------------SKIGSLKVLNL 259
L +L L LNL+RC+L+ DG + +L VL++
Sbjct: 48 LATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV 107
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
FN +T L L+GL L+ L L + LT L+ L L++ Q+
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL 167
Query: 320 LSGLTNLESI 329
L+GL NL+++
Sbjct: 168 LNGLENLDTL 177
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 60/149 (40%), Gaps = 9/149 (6%)
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD---EGLVNLTGLCNLKCLELSDTQV 312
+L+L N + L L T L LNLD C + +G + + G L+LS Q+
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLG-----TLDLSHNQL 89
Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIXXXXXXXXXXXX 372
S L L L +++SF ++ L L GL L+ L L ++
Sbjct: 90 QSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148
Query: 373 XXXXXDLFGARITDSGAAYLRNFKNLRSL 401
L ++T+ A L +NL +L
Sbjct: 149 KLEKLSLANNQLTELPAGLLNGLENLDTL 177
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 21/130 (16%)
Query: 221 LDSLSALGSLFYLNLNRCQLSD---DGCEKF------------------SKIGSLKVLNL 259
L +L L LNL+RC+L+ DG + +L VL++
Sbjct: 48 LATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV 107
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
FN +T L L+GL L+ L L + LT L+ L L++ Q+
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL 167
Query: 320 LSGLTNLESI 329
L+GL NL+++
Sbjct: 168 LNGLENLDTL 177
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 13/152 (8%)
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS---KIGSLKVLNLGFNEITDECLVH 271
PVT L SL + L +LN++ L G K S K+ SL+VL+L N I+ +V
Sbjct: 112 PVTT--LTSLGSCSGLKFLNVSSNTLDFPG--KVSGGLKLNSLEVLDLSANSISGANVVG 167
Query: 272 L---KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
G L+ L + I G V+++ NL+ L++S S+G+ L + L+
Sbjct: 168 WVLSDGCGELKHLAISGNKI--SGDVDVSRCVNLEFLDVSSNNF-STGIPFLGDCSALQH 224
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
+++S +S R ++ + LK LN+ + Q
Sbjct: 225 LDISGNKLSGDFSRAISTCTELKLLNISSNQF 256
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLT-NLESLNLDSCGIGDEGLVNL--TGLCNLKCLE 306
K+ LKVL+L FNE + E L L+ +L +L+L S L NL L+ L
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 397
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
L + LS + L S++LSF +S L LS L+ L L
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 446
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 250 KIGSLKVLNLGFNEITDECLVHLKGLT-NLESLNLDSCGIGDEGLVNL--TGLCNLKCLE 306
K+ LKVL+L FNE + E L L+ +L +L+L S L NL L+ L
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
L + LS + L S++LSF +S L LS L+ L L
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 13/152 (8%)
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS---KIGSLKVLNLGFNEITDECLVH 271
PVT L SL + L +LN++ L G K S K+ SL+VL+L N I+ +V
Sbjct: 115 PVTT--LTSLGSCSGLKFLNVSSNTLDFPG--KVSGGLKLNSLEVLDLSANSISGANVVG 170
Query: 272 L---KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328
G L+ L + I G V+++ NL+ L++S S+G+ L + L+
Sbjct: 171 WVLSDGCGELKHLAISGNKI--SGDVDVSRCVNLEFLDVSSNNF-STGIPFLGDCSALQH 227
Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
+++S +S R ++ + LK LN+ + Q
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 5/147 (3%)
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQVGS 314
+L+L N + L L T L LNLD C + + + G L L L+LS Q+ S
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK---LQVDGTLPVLGTLDLSHNQLQS 91
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIXXXXXXXXXXXXXX 374
L + L L +++SF ++ L L GL L+ L L ++
Sbjct: 92 LPLLGQT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 375 XXXDLFGARITDSGAAYLRNFKNLRSL 401
L ++T+ A L +NL +L
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLDTL 177
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 21/130 (16%)
Query: 221 LDSLSALGSLFYLNLNRCQLSD---DGCEKF------------------SKIGSLKVLNL 259
L +L L LNL+RC+L+ DG + +L VL++
Sbjct: 48 LATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV 107
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
FN +T L L+GL L+ L L + LT L+ L L++ Q+
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL 167
Query: 320 LSGLTNLESI 329
L+GL NL+++
Sbjct: 168 LNGLENLDTL 177
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 5/147 (3%)
Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQVGS 314
+L+L N + L L T L LNLD C + + + G L L L+LS Q+ S
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK---LQVDGTLPVLGTLDLSHNQLQS 91
Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIXXXXXXXXXXXXXX 374
L + L L +++SF ++ L L GL L+ L L ++
Sbjct: 92 LPLLGQT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 375 XXXDLFGARITDSGAAYLRNFKNLRSL 401
L ++T+ A L +NL +L
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLDTL 177
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 21/130 (16%)
Query: 221 LDSLSALGSLFYLNLNRCQLSD---DGCEKF------------------SKIGSLKVLNL 259
L +L L LNL+RC+L+ DG + +L VL++
Sbjct: 48 LATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV 107
Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
FN +T L L+GL L+ L L + LT L+ L L++ Q+
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL 167
Query: 320 LSGLTNLESI 329
L+GL NL+++
Sbjct: 168 LNGLENLDTL 177
>pdb|1KOO|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 227 LGSLFYLNL--NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-LVHLKGLTNLESLNL 283
+ L LNL NR DD K +LK+LNL NE+ E L +KGL LE L L
Sbjct: 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWL 227
Query: 284 D 284
D
Sbjct: 228 D 228
>pdb|3RW6|A Chain A, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW6|B Chain B, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW7|A Chain A, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|B Chain B, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|C Chain C, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|D Chain D, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
Length = 267
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 227 LGSLFYLNL--NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-LVHLKGLTNLESLNL 283
+ L LNL NR DD K +LK+LNL NE+ E L +KGL LE L L
Sbjct: 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWL 227
Query: 284 DSCGIGD 290
D + D
Sbjct: 228 DGNSLCD 234
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG--LRHLSGLTNLE 327
+GL NL+SL L+ GI ++ L NLK L++ ++ + + G + HL L L+
Sbjct: 180 QGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELD 235
>pdb|1FT8|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|C Chain C, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|D Chain D, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|E Chain E, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 227 LGSLFYLNL--NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-LVHLKGLTNLESLNL 283
+ L LNL NR DD K +LK+LNL NE+ E L +KGL LE L L
Sbjct: 163 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWL 221
Query: 284 DSCGIGD 290
D + D
Sbjct: 222 DGNSLCD 228
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 447 LVSLNVSNSRITS-AGLRHLKPLKNLRSLTLESCKVTA-NDIKRLQSRDLPNLV 498
L LN+S ++I + + LK L+NL+SL L +C+VT ND + + LP L
Sbjct: 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,530,267
Number of Sequences: 62578
Number of extensions: 384511
Number of successful extensions: 1223
Number of sequences better than 100.0: 93
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 787
Number of HSP's gapped (non-prelim): 302
length of query: 503
length of database: 14,973,337
effective HSP length: 103
effective length of query: 400
effective length of database: 8,527,803
effective search space: 3411121200
effective search space used: 3411121200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)