Query 010711
Match_columns 503
No_of_seqs 303 out of 3008
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 03:41:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010711.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010711hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.1E-43 2.5E-48 374.9 23.2 443 55-502 91-578 (968)
2 PLN00113 leucine-rich repeat r 100.0 3.4E-43 7.4E-48 371.3 21.1 423 56-483 139-585 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.9E-35 4.1E-40 266.8 1.4 389 59-477 54-447 (873)
4 KOG4194 Membrane glycoprotein 100.0 3.2E-35 7E-40 265.4 1.4 361 134-500 81-444 (873)
5 KOG0618 Serine/threonine phosp 99.9 1.6E-28 3.4E-33 233.9 0.2 414 50-490 39-497 (1081)
6 KOG0472 Leucine-rich repeat pr 99.9 1.5E-29 3.2E-34 218.9 -11.2 417 56-489 67-548 (565)
7 KOG0444 Cytoskeletal regulator 99.9 4.8E-28 1E-32 221.3 -4.7 367 56-434 6-376 (1255)
8 KOG0444 Cytoskeletal regulator 99.9 4.8E-28 1E-32 221.3 -6.3 372 80-462 6-379 (1255)
9 KOG0472 Leucine-rich repeat pr 99.9 5.2E-28 1.1E-32 209.4 -8.9 433 44-502 37-535 (565)
10 KOG0618 Serine/threonine phosp 99.9 2.4E-26 5.2E-31 219.2 -3.1 419 59-502 23-483 (1081)
11 PLN03210 Resistant to P. syrin 99.9 1E-20 2.2E-25 200.7 19.4 199 75-285 552-756 (1153)
12 PLN03210 Resistant to P. syrin 99.9 1.2E-20 2.7E-25 200.1 17.0 342 98-456 550-904 (1153)
13 cd00116 LRR_RI Leucine-rich re 99.8 2E-18 4.3E-23 159.9 23.9 207 273-480 78-318 (319)
14 cd00116 LRR_RI Leucine-rich re 99.8 1.5E-17 3.2E-22 154.1 24.6 256 201-457 20-319 (319)
15 KOG4237 Extracellular matrix p 99.8 5.1E-20 1.1E-24 159.8 -2.1 250 182-431 69-357 (498)
16 KOG4237 Extracellular matrix p 99.7 3E-19 6.4E-24 155.2 -1.4 130 205-334 68-198 (498)
17 PRK15387 E3 ubiquitin-protein 99.6 1.5E-15 3.2E-20 150.2 10.8 262 156-463 202-463 (788)
18 PRK15387 E3 ubiquitin-protein 99.6 6.3E-15 1.4E-19 145.7 11.1 263 133-441 203-465 (788)
19 KOG1909 Ran GTPase-activating 99.6 3.2E-14 6.9E-19 122.5 12.9 191 298-489 90-320 (382)
20 KOG1909 Ran GTPase-activating 99.5 8.5E-14 1.8E-18 119.9 11.9 234 197-430 23-308 (382)
21 PRK15370 E3 ubiquitin-protein 99.5 5.8E-14 1.3E-18 139.9 10.6 149 325-489 284-435 (754)
22 KOG4341 F-box protein containi 99.5 1.5E-13 3.2E-18 121.2 8.2 296 205-501 139-458 (483)
23 KOG4341 F-box protein containi 99.5 1.1E-13 2.3E-18 122.0 7.1 230 57-286 138-382 (483)
24 KOG4658 Apoptotic ATPase [Sign 99.4 1.2E-14 2.5E-19 147.1 0.1 256 2-265 451-730 (889)
25 PRK15370 E3 ubiquitin-protein 99.4 9.3E-13 2E-17 131.4 10.5 228 180-459 199-429 (754)
26 KOG3207 Beta-tubulin folding c 99.3 8.9E-13 1.9E-17 117.0 2.9 210 273-483 118-340 (505)
27 KOG2120 SCF ubiquitin ligase, 99.3 1E-11 2.3E-16 104.8 8.4 195 302-498 187-390 (419)
28 KOG0617 Ras suppressor protein 99.2 1.1E-13 2.4E-18 106.7 -6.6 156 80-242 32-187 (264)
29 KOG3207 Beta-tubulin folding c 99.2 3E-12 6.5E-17 113.7 0.3 212 249-461 118-342 (505)
30 PF14580 LRR_9: Leucine-rich r 99.2 1.2E-11 2.6E-16 100.1 3.6 127 346-477 17-148 (175)
31 KOG2120 SCF ubiquitin ligase, 99.2 1E-10 2.2E-15 98.9 7.6 179 277-455 186-373 (419)
32 KOG0617 Ras suppressor protein 99.1 5.3E-13 1.2E-17 103.0 -6.5 156 56-219 32-188 (264)
33 PF14580 LRR_9: Leucine-rich r 99.1 4.4E-11 9.6E-16 96.8 3.0 125 324-453 19-148 (175)
34 KOG4658 Apoptotic ATPase [Sign 99.1 4E-11 8.6E-16 121.8 1.3 183 55-243 543-732 (889)
35 KOG1259 Nischarin, modulator o 98.9 2.1E-10 4.7E-15 97.1 -0.0 126 349-481 285-411 (490)
36 COG5238 RNA1 Ran GTPase-activa 98.9 1.6E-08 3.5E-13 84.7 10.8 24 200-223 26-49 (388)
37 PF13855 LRR_8: Leucine rich r 98.8 1.4E-09 3E-14 72.3 1.5 61 420-481 1-61 (61)
38 COG5238 RNA1 Ran GTPase-activa 98.8 7.9E-08 1.7E-12 80.7 12.0 227 271-498 25-306 (388)
39 KOG1259 Nischarin, modulator o 98.8 1.8E-09 4E-14 91.6 2.4 130 227-362 283-413 (490)
40 KOG3665 ZYG-1-like serine/thre 98.7 5.6E-08 1.2E-12 96.7 10.2 212 274-501 58-281 (699)
41 PF13855 LRR_8: Leucine rich r 98.7 4.7E-09 1E-13 69.7 1.2 61 396-457 1-61 (61)
42 PLN03150 hypothetical protein; 98.5 1.1E-07 2.4E-12 95.0 6.4 105 374-479 420-525 (623)
43 KOG2982 Uncharacterized conser 98.5 8.4E-08 1.8E-12 81.6 4.0 66 346-411 197-264 (418)
44 KOG3665 ZYG-1-like serine/thre 98.5 2.8E-07 6.1E-12 91.8 7.6 141 81-223 122-269 (699)
45 COG4886 Leucine-rich repeat (L 98.5 2E-07 4.3E-12 88.9 5.6 177 274-459 114-291 (394)
46 PLN03150 hypothetical protein; 98.5 2.5E-07 5.5E-12 92.5 6.3 106 350-456 420-526 (623)
47 KOG1947 Leucine rich repeat pr 98.3 2.1E-06 4.5E-11 84.7 9.6 62 322-383 241-306 (482)
48 KOG0531 Protein phosphatase 1, 98.3 2.7E-08 5.8E-13 94.9 -3.9 216 252-482 72-290 (414)
49 KOG1859 Leucine-rich repeat pr 98.3 2E-08 4.3E-13 95.6 -5.5 105 371-481 186-291 (1096)
50 COG4886 Leucine-rich repeat (L 98.2 1.5E-06 3.2E-11 83.0 5.8 179 78-267 113-292 (394)
51 KOG1947 Leucine rich repeat pr 98.2 4.7E-06 1E-10 82.2 8.9 82 274-355 241-328 (482)
52 KOG2982 Uncharacterized conser 98.1 4.6E-06 1E-10 71.3 6.0 155 325-482 122-290 (418)
53 KOG0531 Protein phosphatase 1, 98.1 1.6E-07 3.5E-12 89.6 -3.2 243 226-483 70-319 (414)
54 KOG1859 Leucine-rich repeat pr 98.1 8.7E-08 1.9E-12 91.4 -5.0 127 326-459 166-293 (1096)
55 KOG0532 Leucine-rich repeat (L 98.0 1.6E-07 3.5E-12 87.1 -5.0 171 280-460 79-249 (722)
56 KOG0532 Leucine-rich repeat (L 98.0 1.6E-07 3.4E-12 87.2 -5.1 16 248-263 230-245 (722)
57 KOG1644 U2-associated snRNP A' 98.0 2.9E-06 6.4E-11 68.3 2.1 106 371-479 41-150 (233)
58 PF12799 LRR_4: Leucine Rich r 97.8 3E-05 6.5E-10 46.8 4.0 36 446-482 2-37 (44)
59 KOG4579 Leucine-rich repeat (L 97.8 3.6E-06 7.7E-11 63.3 -0.1 113 348-463 27-141 (177)
60 KOG3864 Uncharacterized conser 97.8 8.3E-06 1.8E-10 65.8 1.8 83 398-480 103-187 (221)
61 KOG1644 U2-associated snRNP A' 97.7 2.9E-05 6.4E-10 62.7 3.7 108 347-457 41-152 (233)
62 PF12799 LRR_4: Leucine Rich r 97.7 4.9E-05 1.1E-09 45.9 3.6 37 421-459 2-38 (44)
63 PF13306 LRR_5: Leucine rich r 97.7 1.9E-05 4.2E-10 61.9 2.1 105 368-478 8-112 (129)
64 KOG2123 Uncharacterized conser 97.7 7.3E-06 1.6E-10 69.5 -0.6 100 348-451 19-123 (388)
65 KOG4579 Leucine-rich repeat (L 97.7 1E-05 2.3E-10 60.8 0.3 111 326-439 29-141 (177)
66 PF13306 LRR_5: Leucine rich r 97.6 2.1E-05 4.6E-10 61.7 1.6 100 366-471 29-128 (129)
67 KOG3864 Uncharacterized conser 97.5 6.3E-05 1.4E-09 60.9 2.5 83 59-141 103-186 (221)
68 KOG2123 Uncharacterized conser 97.4 3.1E-05 6.7E-10 65.8 -0.5 109 371-487 18-133 (388)
69 KOG2739 Leucine-rich acidic nu 97.3 0.0001 2.2E-09 62.4 1.6 87 368-454 61-152 (260)
70 PRK15386 type III secretion pr 97.1 0.0016 3.5E-08 60.3 7.6 12 80-91 51-62 (426)
71 KOG2739 Leucine-rich acidic nu 96.9 0.00023 4.9E-09 60.3 0.2 106 371-479 42-153 (260)
72 PRK15386 type III secretion pr 96.6 0.0059 1.3E-07 56.6 6.8 139 318-479 46-187 (426)
73 KOG4308 LRR-containing protein 96.4 0.00066 1.4E-08 65.2 -0.9 201 278-479 89-328 (478)
74 KOG4308 LRR-containing protein 96.2 0.00066 1.4E-08 65.2 -1.9 187 302-489 89-310 (478)
75 PF13516 LRR_6: Leucine Rich r 94.6 0.024 5.3E-07 28.8 1.6 22 468-489 1-22 (24)
76 smart00367 LRR_CC Leucine-rich 94.0 0.064 1.4E-06 27.9 2.4 23 468-490 1-24 (26)
77 smart00367 LRR_CC Leucine-rich 93.8 0.065 1.4E-06 27.9 2.3 23 80-102 1-23 (26)
78 PF00560 LRR_1: Leucine Rich R 93.4 0.033 7.2E-07 27.6 0.6 15 446-460 1-15 (22)
79 PF13504 LRR_7: Leucine rich r 93.1 0.053 1.1E-06 24.9 1.0 12 446-457 2-13 (17)
80 PF13516 LRR_6: Leucine Rich r 92.6 0.081 1.8E-06 26.9 1.4 17 397-413 3-19 (24)
81 smart00368 LRR_RI Leucine rich 90.7 0.36 7.7E-06 25.6 2.7 22 469-490 2-23 (28)
82 smart00370 LRR Leucine-rich re 88.6 0.36 7.7E-06 25.0 1.7 20 445-464 2-21 (26)
83 smart00369 LRR_TYP Leucine-ric 88.6 0.36 7.7E-06 25.0 1.7 20 445-464 2-21 (26)
84 KOG3763 mRNA export factor TAP 80.0 2.3 5E-05 41.0 4.0 66 393-459 215-284 (585)
85 smart00365 LRR_SD22 Leucine-ri 68.2 3.7 8E-05 21.3 1.3 15 445-459 2-16 (26)
86 smart00364 LRR_BAC Leucine-ric 48.7 9.3 0.0002 19.8 0.7 15 446-460 3-17 (26)
87 KOG0473 Leucine-rich repeat pr 47.6 0.61 1.3E-05 39.4 -5.7 85 370-458 40-124 (326)
88 KOG3763 mRNA export factor TAP 43.5 25 0.00054 34.4 3.2 65 346-410 216-284 (585)
89 KOG0473 Leucine-rich repeat pr 40.0 1.6 3.5E-05 37.0 -4.4 81 77-162 38-118 (326)
90 PF14162 YozD: YozD-like prote 32.4 53 0.0011 20.2 2.2 19 4-22 11-29 (57)
91 KOG3735 Tropomodulin and leiom 27.8 82 0.0018 28.8 3.7 70 420-489 198-275 (353)
92 KOG4242 Predicted myosin-I-bin 24.6 1.4E+02 0.0031 28.9 4.8 197 300-500 165-385 (553)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-43 Score=374.92 Aligned_cols=443 Identities=21% Similarity=0.221 Sum_probs=242.9
Q ss_pred cCCCeeEEEccCCCCChhhhhhc-cCCCCCCEEecCCCe---------------------ecChhhHHHhhCCCCCCEEE
Q 010711 55 QGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFCI---------------------QISDGGLEHLRGLSNLTSLS 112 (503)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~---------------------~~~~~~~~~~~~~~~L~~L~ 112 (503)
..++|+.|+++++.+.+..+..+ ..+++|++|++++|. .+....+..++.+++|++|+
T Consensus 91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 170 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLD 170 (968)
T ss_pred CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEE
Confidence 46777777777776665555443 366666666666542 12222334444555555555
Q ss_pred cCCCccccHHHHHHHhCCCCCcEEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccC
Q 010711 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 192 (503)
Q Consensus 113 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 192 (503)
+++|. +....|..+.++++|++|++++|......+..+.++++|++|++++|. +....+..+..+++|++|+++++.+
T Consensus 171 L~~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 171 LGGNV-LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN-LSGEIPYEIGGLTSLNHLDLVYNNL 248 (968)
T ss_pred CccCc-ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc-cCCcCChhHhcCCCCCEEECcCcee
Confidence 55553 233344455555555555555544333344445555555555555433 2223344455555555555555555
Q ss_pred CchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHh
Q 010711 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272 (503)
Q Consensus 193 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 272 (503)
.+..+..+.++++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+
T Consensus 249 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~ 328 (968)
T PLN00113 249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL 328 (968)
T ss_pred ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH
Confidence 54445555555556666665555544444455555566666666555555455555555666666666655555445555
Q ss_pred hCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCE
Q 010711 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352 (503)
Q Consensus 273 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 352 (503)
..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.+++.+|.+....+..+..+++|+.
T Consensus 329 ~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~ 408 (968)
T PLN00113 329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRR 408 (968)
T ss_pred hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCE
Confidence 55666666666666555444555555556666666555544333333334444444444444444333444445555555
Q ss_pred eecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcC-----------------------CCCCeEEecCCCCC
Q 010711 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF-----------------------KNLRSLEICGGGLT 409 (503)
Q Consensus 353 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----------------------~~L~~L~l~~~~~~ 409 (503)
|++++|.+++..+..+..+++|+.|++++|.+....+..+..+ ++|+.|++++|.+.
T Consensus 409 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~ 488 (968)
T PLN00113 409 VRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFS 488 (968)
T ss_pred EECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccC
Confidence 5555555544444444445555555555544443333333333 44555555555555
Q ss_pred hhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCCHHHHHHH
Q 010711 410 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 489 (503)
Q Consensus 410 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 489 (503)
+..+..+..+++|+.|++++| .+....|..+.++++|+.|+|++|.++...+..+..+++|+.|++++|.++......+
T Consensus 489 ~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 567 (968)
T PLN00113 489 GAVPRKLGSLSELMQLKLSEN-KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL 567 (968)
T ss_pred CccChhhhhhhccCEEECcCC-cceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhH
Confidence 555555666667777777776 5666566666677777777777777776666666777777777777777665444444
Q ss_pred HhcCCCCcccccC
Q 010711 490 QSRDLPNLVSFRP 502 (503)
Q Consensus 490 ~~~~~~~L~~l~~ 502 (503)
. .+++|+.+.+
T Consensus 568 ~--~l~~L~~l~l 578 (968)
T PLN00113 568 G--NVESLVQVNI 578 (968)
T ss_pred h--cCcccCEEec
Confidence 4 5566665543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.4e-43 Score=371.33 Aligned_cols=423 Identities=19% Similarity=0.194 Sum_probs=303.5
Q ss_pred CCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcE
Q 010711 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (503)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (503)
.++|++|+++++.+.+..+..++.+++|++|++++| .+....+..+.++++|++|++++|. +....|..+.++++|++
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLTLASNQ-LVGQIPRELGQMKSLKW 216 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccC-cccccCChhhhhCcCCCeeeccCCC-CcCcCChHHcCcCCccE
Confidence 445555556655555556666788888999999886 4555556778888888888888886 45566788888888888
Q ss_pred EeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCC
Q 010711 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (503)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 215 (503)
|++++|......+..+.++++|++|++++|. +....+..+..+++|++|+++++.+.+..+..+..+++|+.|++++|.
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN-LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCce-eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 8888876555666777888888888888754 344455667777788888887777766666666777777777777777
Q ss_pred CcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHH
Q 010711 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295 (503)
Q Consensus 216 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 295 (503)
+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence 66555566666777777777777666656666666677777777766666555555666666666666666554443444
Q ss_pred Hhc------------------------CCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCC
Q 010711 296 LTG------------------------LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351 (503)
Q Consensus 296 l~~------------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 351 (503)
+.. +++|+.|++++|.+....+..+..++.|+.+++++|.+....+..+..+++|+
T Consensus 376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 455 (968)
T PLN00113 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455 (968)
T ss_pred HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCc
Confidence 444 44455555555444433334444555555555555555444444444556666
Q ss_pred EeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCC
Q 010711 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431 (503)
Q Consensus 352 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 431 (503)
.|++++|.+.+..+..+ ..++|+.|++++|++....+..+..+++|+.|++++|.+.+..+..+..+++|+.|+|++|
T Consensus 456 ~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N- 533 (968)
T PLN00113 456 MLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN- 533 (968)
T ss_pred EEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCC-
Confidence 66666665554333322 3467888888888887777788889999999999999999888889999999999999999
Q ss_pred CCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCCH
Q 010711 432 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 483 (503)
Q Consensus 432 ~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 483 (503)
.++...+..+..+++|+.|++++|+++...|..+..+++|+.|++++|+++.
T Consensus 534 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 534 QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred cccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 8888888999999999999999999998888889999999999999998764
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-35 Score=266.84 Aligned_cols=389 Identities=23% Similarity=0.295 Sum_probs=229.5
Q ss_pred eeEEEccCCCCChhhhhhccC-C-CCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcEE
Q 010711 59 LLSVDLSGSDVTDSGLIHLKD-C-SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (503)
Q Consensus 59 l~~L~l~~~~~~~~~~~~~~~-~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (503)
.+.|+.++..+....+..+.. + +.-+.|++++| .+..+.+..|.++++|+.+++..|.. ..+|.......+|+.|
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N~L--t~IP~f~~~sghl~~L 130 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKNEL--TRIPRFGHESGHLEKL 130 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeecccc-ccccCcHHHHhcCCcceeeeeccchh--hhcccccccccceeEE
Confidence 456677766665433334422 2 34566777775 66666677777777777777777642 3345443344456666
Q ss_pred eccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCC
Q 010711 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216 (503)
Q Consensus 137 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 216 (503)
++.++-+.+.....+.-++.||.||++.+ .+.......+..-.++++|++++|.++....+.
T Consensus 131 ~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~----------------- 192 (873)
T KOG4194|consen 131 DLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGH----------------- 192 (873)
T ss_pred eeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeecccccccccccc-----------------
Confidence 66664333333344444555555555542 233233333333344445555444444444444
Q ss_pred cHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHH
Q 010711 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296 (503)
Q Consensus 217 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 296 (503)
|..+.+|..|.++.|.++...+..|.++++|+.|++..|.+.......|..+++|+.|.+..|.+......+|
T Consensus 193 -------F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~F 265 (873)
T KOG4194|consen 193 -------FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAF 265 (873)
T ss_pred -------ccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcce
Confidence 4444455555555555554444455555555555555554443333345555666666666555554444455
Q ss_pred hcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCE
Q 010711 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376 (503)
Q Consensus 297 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 376 (503)
-.+.++++|++..|++......++-++++|+.|++++|.+....+..+..+++|+.|+++.|.++...+..|..+..|++
T Consensus 266 y~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~ 345 (873)
T KOG4194|consen 266 YGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEE 345 (873)
T ss_pred eeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhh
Confidence 55666666666666655554445556666666677666666666666666677777777777776666666666677777
Q ss_pred EEccCCccChHHHHHHhcCCCCCeEEecCCCCCh---hHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecc
Q 010711 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD---AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453 (503)
Q Consensus 377 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~ 453 (503)
|+++.|++.......|..+++|++|++++|.+.. +....|..+++|++|.+.+| ++..+.-.+|.++++|+.|+|.
T Consensus 346 LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~ 424 (873)
T KOG4194|consen 346 LNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLG 424 (873)
T ss_pred hcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCC
Confidence 7777777766666666667777777777765432 23445566777777777777 6777666777777777777777
Q ss_pred cCccchhhHhhccCCcccceEEec
Q 010711 454 NSRITSAGLRHLKPLKNLRSLTLE 477 (503)
Q Consensus 454 ~~~~~~~~~~~l~~~~~L~~L~l~ 477 (503)
+|.+-.+-+++|..+ .|++|.++
T Consensus 425 ~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 425 DNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred CCcceeecccccccc-hhhhhhhc
Confidence 777776666667666 66666665
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-35 Score=265.36 Aligned_cols=361 Identities=23% Similarity=0.249 Sum_probs=301.2
Q ss_pred cEEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCC
Q 010711 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213 (503)
Q Consensus 134 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 213 (503)
++|+++++......+..+.++++|+.+++.++. ++. .|.......+|+.|++..|.++......+..++.|+.|+++.
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~-Lt~-IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE-LTR-IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccch-hhh-cccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 345555543333344555666666666666532 331 233333456788999998888877778888889999999999
Q ss_pred CCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHH
Q 010711 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293 (503)
Q Consensus 214 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 293 (503)
|.+.......+..-.++++|++.+|.++......|..+.+|.+|.++.|.++......|..+++|+.|+|..|++.....
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ 238 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG 238 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence 98876655566666799999999999998888889999999999999999998778889999999999999998876666
Q ss_pred HHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCC
Q 010711 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373 (503)
Q Consensus 294 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 373 (503)
..|.++++|+.+.+..|.+.....-.|-.+.++++|++..|++.......+.++..|+.|+++.|.+....++.+..+++
T Consensus 239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftqk 318 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQK 318 (873)
T ss_pred hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhccc
Confidence 78899999999999999998877777888899999999999988776677778999999999999999888888889999
Q ss_pred CCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhh---HHHHhcCCCCcEE
Q 010711 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT---LELISGLTGLVSL 450 (503)
Q Consensus 374 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~l~~L~~L 450 (503)
|+.|++++|+++...+..|..+..|++|++++|.+.......|..+.+|++|++++| .++... ...|.++++|+.|
T Consensus 319 L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N-~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 319 LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSN-ELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred ceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCC-eEEEEEecchhhhccchhhhhe
Confidence 999999999999999999999999999999999999888889999999999999999 666543 3467889999999
Q ss_pred ecccCccchhhHhhccCCcccceEEeccCCCCHHHHHHHHhcCCCCcccc
Q 010711 451 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 500 (503)
Q Consensus 451 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l 500 (503)
++.+|++..+...+|..++.|++|++.+|.|..+....|. .+ +|+.|
T Consensus 398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe--~m-~Lk~L 444 (873)
T KOG4194|consen 398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFE--PM-ELKEL 444 (873)
T ss_pred eecCceeeecchhhhccCcccceecCCCCcceeecccccc--cc-hhhhh
Confidence 9999999999999999999999999999998877766665 44 55544
No 5
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.94 E-value=1.6e-28 Score=233.92 Aligned_cols=414 Identities=22% Similarity=0.228 Sum_probs=261.1
Q ss_pred HHHHhcCCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhC
Q 010711 50 DVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129 (503)
Q Consensus 50 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 129 (503)
+.+....+ |++|+++++.+. ..+..+...++|++|+++.| .+. ..+....++.+|+++.|.++.. ...|..+..
T Consensus 39 ~~~~~~v~-L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n-~i~-~vp~s~~~~~~l~~lnL~~n~l--~~lP~~~~~ 112 (1081)
T KOG0618|consen 39 EFVEKRVK-LKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRN-YIR-SVPSSCSNMRNLQYLNLKNNRL--QSLPASISE 112 (1081)
T ss_pred HHhhheee-eEEeeccccccc-cCCchhhhHHHHhhcccchh-hHh-hCchhhhhhhcchhheeccchh--hcCchhHHh
Confidence 33444344 888999988776 56666778888888888875 333 2346667888899999988753 567888888
Q ss_pred CCCCcEEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEE
Q 010711 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209 (503)
Q Consensus 130 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 209 (503)
+.+|++|+++.+ .....|..+..+..++.+..+++..+ ..++... ++.+++..+.+....+..+..+.. .+
T Consensus 113 lknl~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N~~~-----~~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~l 183 (1081)
T KOG0618|consen 113 LKNLQYLDLSFN-HFGPIPLVIEVLTAEEELAASNNEKI-----QRLGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QL 183 (1081)
T ss_pred hhcccccccchh-ccCCCchhHHhhhHHHHHhhhcchhh-----hhhcccc-chhhhhhhhhcccchhcchhhhhe--ee
Confidence 889999998884 44455555555555555555554111 1111111 334444444333333333333333 34
Q ss_pred EcCCCCCcHHHHHHhhC--------------------CCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHH
Q 010711 210 NLEGCPVTAACLDSLSA--------------------LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269 (503)
Q Consensus 210 ~l~~~~~~~~~~~~l~~--------------------l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 269 (503)
++.+|.+... .+.. .++++.|...+|.+.... .-....+++.++++.+.++. .+
T Consensus 184 dLr~N~~~~~---dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~--~~p~p~nl~~~dis~n~l~~-lp 257 (1081)
T KOG0618|consen 184 DLRYNEMEVL---DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLD--VHPVPLNLQYLDISHNNLSN-LP 257 (1081)
T ss_pred ecccchhhhh---hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeec--cccccccceeeecchhhhhc-ch
Confidence 4444433211 1111 134444444444443111 11123456666666666553 33
Q ss_pred HHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHH-----
Q 010711 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL----- 344 (503)
Q Consensus 270 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----- 344 (503)
.++..+.+|+.+....+.+.. .+..+....+|+.+.+..|.+... +...+....|++|++..|++.......+
T Consensus 258 ~wi~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~yi-p~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~ 335 (1081)
T KOG0618|consen 258 EWIGACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELEYI-PPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNA 335 (1081)
T ss_pred HHHHhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhhhC-CCcccccceeeeeeehhccccccchHHHhhhhH
Confidence 666666666666666665532 233333444455555444443322 2223344555555555554433221111
Q ss_pred --------------------hCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEec
Q 010711 345 --------------------AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404 (503)
Q Consensus 345 --------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 404 (503)
..++.|+.|++.+|.+++.....+.++.+|+.|++++|++...+...+.+++.|++|+++
T Consensus 336 ~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LS 415 (1081)
T KOG0618|consen 336 SLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLS 415 (1081)
T ss_pred HHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcc
Confidence 124578889999999999888888899999999999999999999999999999999999
Q ss_pred CCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCCHH
Q 010711 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 484 (503)
Q Consensus 405 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 484 (503)
||.++.. +..+..++.|++|...+| .+...+ .+.+++.|+.+|+++|.++.........-|+|++|+++||.-..-
T Consensus 416 GNkL~~L-p~tva~~~~L~tL~ahsN-~l~~fP--e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~ 491 (1081)
T KOG0618|consen 416 GNKLTTL-PDTVANLGRLHTLRAHSN-QLLSFP--ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVF 491 (1081)
T ss_pred cchhhhh-hHHHHhhhhhHHHhhcCC-ceeech--hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccccc
Confidence 9999886 477888999999999888 666644 788999999999999999987665444458999999999964333
Q ss_pred HHHHHH
Q 010711 485 DIKRLQ 490 (503)
Q Consensus 485 ~~~~~~ 490 (503)
..+.+.
T Consensus 492 d~~~l~ 497 (1081)
T KOG0618|consen 492 DHKTLK 497 (1081)
T ss_pred chhhhH
Confidence 333333
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=1.5e-29 Score=218.87 Aligned_cols=417 Identities=21% Similarity=0.226 Sum_probs=258.1
Q ss_pred CCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccc----------------
Q 010711 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI---------------- 119 (503)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---------------- 119 (503)
...+++++++++.+. ..+.++++..+++.|+.+++ .+. ..++.+....+|+.++++.+...
T Consensus 67 L~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n-~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~ 143 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHN-KLS-ELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLD 143 (565)
T ss_pred ccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccc-hHh-hccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhh
Confidence 445566666665554 34455555555555555553 222 22444444445555554444321
Q ss_pred -----cHHHHHHHhCCCCCcEEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCc
Q 010711 120 -----TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194 (503)
Q Consensus 120 -----~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 194 (503)
-...|..+.++..|..+++.++ .....++..-+++.|++++...+ .-...++.++.+.+|+.|++..+.+..
T Consensus 144 ~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N--~L~tlP~~lg~l~~L~~LyL~~Nki~~ 220 (565)
T KOG0472|consen 144 ATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNSN--LLETLPPELGGLESLELLYLRRNKIRF 220 (565)
T ss_pred ccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccchh--hhhcCChhhcchhhhHHHHhhhccccc
Confidence 0233444445555555555552 33344444444777777776642 334567788888888888888887764
Q ss_pred hhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhC
Q 010711 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274 (503)
Q Consensus 195 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 274 (503)
. ..|.+|..|+++.+..|.+.....+....++++..|++.+|++.+ .|+.+..+.+|+.||+++|.++. .+..+++
T Consensus 221 l--Pef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is~-Lp~sLgn 296 (565)
T KOG0472|consen 221 L--PEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDISS-LPYSLGN 296 (565)
T ss_pred C--CCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccCCcccc-CCccccc
Confidence 3 278888888888888887766555555588889999999988875 56777788889999999888874 4555677
Q ss_pred CCCCCEEEccCCCCChhHHHHHhc-----------------------------------------CCCCCEEecCCCccC
Q 010711 275 LTNLESLNLDSCGIGDEGLVNLTG-----------------------------------------LCNLKCLELSDTQVG 313 (503)
Q Consensus 275 ~~~L~~L~l~~~~~~~~~~~~l~~-----------------------------------------~~~L~~L~l~~~~~~ 313 (503)
+ +|+.|.+.|+.+...--..+.+ ..+.+.|++++-+++
T Consensus 297 l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt 375 (565)
T KOG0472|consen 297 L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT 375 (565)
T ss_pred c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc
Confidence 7 8888888888654322111110 012222333333333
Q ss_pred hhhHHHhhCC--CCCCeeeccCCCCChHHHHHHhCCCCCC-EeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHH
Q 010711 314 SSGLRHLSGL--TNLESINLSFTGISDGSLRKLAGLSSLK-SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390 (503)
Q Consensus 314 ~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 390 (503)
..+...|... .-...++++.|++... |..+..++.+. .+.++++.+. ..+..+..+++|..|++++|.+.+.+ .
T Consensus 376 ~VPdEVfea~~~~~Vt~VnfskNqL~el-Pk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln~LP-~ 452 (565)
T KOG0472|consen 376 LVPDEVFEAAKSEIVTSVNFSKNQLCEL-PKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLNDLP-E 452 (565)
T ss_pred cCCHHHHHHhhhcceEEEecccchHhhh-hhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhhhcc-h
Confidence 2222222211 1134444544444321 22122222222 2333333333 23455567788888999888776654 4
Q ss_pred HHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcc
Q 010711 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 470 (503)
Q Consensus 391 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~ 470 (503)
.+..+..|+.|+++.|.+.. .|..+..+..++.+-.++| ++..+.+..+.++.+|..||+.+|.+..+ |..+++|++
T Consensus 453 e~~~lv~Lq~LnlS~NrFr~-lP~~~y~lq~lEtllas~n-qi~~vd~~~l~nm~nL~tLDL~nNdlq~I-Pp~Lgnmtn 529 (565)
T KOG0472|consen 453 EMGSLVRLQTLNLSFNRFRM-LPECLYELQTLETLLASNN-QIGSVDPSGLKNMRNLTTLDLQNNDLQQI-PPILGNMTN 529 (565)
T ss_pred hhhhhhhhheeccccccccc-chHHHhhHHHHHHHHhccc-cccccChHHhhhhhhcceeccCCCchhhC-Chhhccccc
Confidence 45567779999999887765 3555555566777777777 88888888899999999999999999887 558899999
Q ss_pred cceEEeccCCCCHHHHHHH
Q 010711 471 LRSLTLESCKVTANDIKRL 489 (503)
Q Consensus 471 L~~L~l~~~~~~~~~~~~~ 489 (503)
|++|+++||+|......-+
T Consensus 530 L~hLeL~gNpfr~Pr~~iL 548 (565)
T KOG0472|consen 530 LRHLELDGNPFRQPRHQIL 548 (565)
T ss_pred eeEEEecCCccCCCHHHHh
Confidence 9999999999986554433
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=4.8e-28 Score=221.28 Aligned_cols=367 Identities=21% Similarity=0.201 Sum_probs=186.2
Q ss_pred CCCeeEEEccCCCCCh-hhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCc
Q 010711 56 GSSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (503)
Q Consensus 56 ~~~l~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 134 (503)
.+-+|-+++++|.+++ ..|.....|.+++.|.|.. ..+. ..++.++.|.+|++|.+.+|.. ...-..++.++.||
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnr-t~L~-~vPeEL~~lqkLEHLs~~HN~L--~~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNR-TKLE-QVPEELSRLQKLEHLSMAHNQL--ISVHGELSDLPRLR 81 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEech-hhhh-hChHHHHHHhhhhhhhhhhhhh--HhhhhhhccchhhH
Confidence 4556777777777763 3344456677777777665 2332 2355666666666666666653 22233455566666
Q ss_pred EEeccCcc-cccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCC
Q 010711 135 KLDLERCT-RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213 (503)
Q Consensus 135 ~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 213 (503)
.+.+..+. +..+.|..+-.+.-|.+|+++++.... .+..+...+++-.|+++.|++...+..-+-++..|-.|++++
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E--vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE--VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhhh--cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence 66665533 223344555555555556655532221 334444455555555555555544444445555555555555
Q ss_pred CCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCC-hHHHHHhhCCCCCCEEEccCCCCChhH
Q 010711 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT-DECLVHLKGLTNLESLNLDSCGIGDEG 292 (503)
Q Consensus 214 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~ 292 (503)
|.+... |..+..+..|++|.+++|.+.......+..+++|++|.++++.-+ ...|..+..+.+|..++++.|++. ..
T Consensus 160 NrLe~L-PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~v 237 (1255)
T KOG0444|consen 160 NRLEML-PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IV 237 (1255)
T ss_pred chhhhc-CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cc
Confidence 554433 334455555555555555544433344444455555555554322 123333444555555555555443 22
Q ss_pred HHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhH-HHhhcCC
Q 010711 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG-LAALTSL 371 (503)
Q Consensus 293 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~ 371 (503)
|..+-.+++|+.|++++|.+..... ..+...+|++|+++.|+++. .|.++.++++|+.|+..+|+++..+ |..++.+
T Consensus 238 Pecly~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL 315 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL 315 (1255)
T ss_pred hHHHhhhhhhheeccCcCceeeeec-cHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhh
Confidence 3344455555555555555443211 12223455555555555543 3444555555555555555554322 3444455
Q ss_pred CCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCC
Q 010711 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434 (503)
Q Consensus 372 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 434 (503)
..|+.+...+|.+.- .|..+..|+.|+.|.+++|.+.. .|+.+.-++.|++|++..|+++.
T Consensus 316 ~~Levf~aanN~LEl-VPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 316 IQLEVFHAANNKLEL-VPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhhHHHHhhcccccc-CchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCcCcc
Confidence 555555555554432 24445555555555555555433 24444445555555555554443
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=4.8e-28 Score=221.29 Aligned_cols=372 Identities=21% Similarity=0.195 Sum_probs=259.7
Q ss_pred CCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcEEeccCcccccCccccccCCccccE
Q 010711 80 CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159 (503)
Q Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 159 (503)
++-.|-.++++|.-....-+.....+++++-|.+..+.. ...|+.++.+.+|++|.+.++ .+...-..+..++.||.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L--~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL--EQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRLRS 82 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh--hhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhhHH
Confidence 455677888887433355677888899999999988764 677999999999999999884 34445566778889999
Q ss_pred eeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCC
Q 010711 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239 (503)
Q Consensus 160 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 239 (503)
+.+..++....-.+..+..+..|+.|+++.|++. ..+..+...+++-.|++++|.+.......+.++..|-.|++++|.
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence 9998877666666777888899999999988887 556778888888899999998877655566678888888888888
Q ss_pred CChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCC-hhHHHHHhcCCCCCEEecCCCccChhhHH
Q 010711 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG-DEGLVNLTGLCNLKCLELSDTQVGSSGLR 318 (503)
Q Consensus 240 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 318 (503)
+.. .|+.+..+..|++|++++|++.......+..+++|+.|.+++.+-+ ...|..+..+.+|..++++.|.+... +.
T Consensus 162 Le~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~v-Pe 239 (1255)
T KOG0444|consen 162 LEM-LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIV-PE 239 (1255)
T ss_pred hhh-cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcc-hH
Confidence 764 5566777888888888888776555555556666777777766322 23345566677777777777766544 44
Q ss_pred HhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHH-HHHHhcCCC
Q 010711 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG-AAYLRNFKN 397 (503)
Q Consensus 319 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~ 397 (503)
.+-++++|+.|++++|.++.... ......+|++|.++.|+++.. |.++..++.|+.|.+.+|+++..+ |..++.+..
T Consensus 240 cly~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt~L-P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~ 317 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLTVL-PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQ 317 (1255)
T ss_pred HHhhhhhhheeccCcCceeeeec-cHHHHhhhhhhccccchhccc-hHHHhhhHHHHHHHhccCcccccCCccchhhhhh
Confidence 45566777777777776664321 122345677777777777654 455566777777777777655433 555666667
Q ss_pred CCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhH
Q 010711 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462 (503)
Q Consensus 398 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 462 (503)
|+++..++|.+.- .|+.++.|+.|++|.++.| .+.. .|+.+.-++-|+.||+..|+-...+|
T Consensus 318 Levf~aanN~LEl-VPEglcRC~kL~kL~L~~N-rLiT-LPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 318 LEVFHAANNKLEL-VPEGLCRCVKLQKLKLDHN-RLIT-LPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hHHHHhhcccccc-CchhhhhhHHHHHhccccc-ceee-chhhhhhcCCcceeeccCCcCccCCC
Confidence 7777777665543 4566667777777777776 3333 45566667777777777775444433
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=5.2e-28 Score=209.35 Aligned_cols=433 Identities=22% Similarity=0.235 Sum_probs=284.1
Q ss_pred CChhHHHHHHhcCCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHH
Q 010711 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123 (503)
Q Consensus 44 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 123 (503)
-.+.|+.+. .+..+.++.+.+. .....+.++..|.+|+++++ ... ..+.+++.+..++.++.+++.. ...
T Consensus 37 e~e~wW~qv-----~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n-~l~-~lp~aig~l~~l~~l~vs~n~l--s~l 106 (565)
T KOG0472|consen 37 EGENWWEQV-----DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDN-KLS-QLPAAIGELEALKSLNVSHNKL--SEL 106 (565)
T ss_pred chhhhhhhc-----chhhhhhccCchh-hccHhhhcccceeEEEeccc-hhh-hCCHHHHHHHHHHHhhcccchH--hhc
Confidence 355676533 4688899988876 34456789999999999996 333 3477888888999999999974 778
Q ss_pred HHHHhCCCCCcEEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcC
Q 010711 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203 (503)
Q Consensus 124 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~ 203 (503)
|+.+....+|+.++++. ......++.++.+..++.++..++...+ .++.+..+.++..+++.++.+....+..+. +
T Consensus 107 p~~i~s~~~l~~l~~s~-n~~~el~~~i~~~~~l~dl~~~~N~i~s--lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m 182 (565)
T KOG0472|consen 107 PEQIGSLISLVKLDCSS-NELKELPDSIGRLLDLEDLDATNNQISS--LPEDMVNLSKLSKLDLEGNKLKALPENHIA-M 182 (565)
T ss_pred cHHHhhhhhhhhhhccc-cceeecCchHHHHhhhhhhhcccccccc--CchHHHHHHHHHHhhccccchhhCCHHHHH-H
Confidence 99999999999999998 4567778888888889999888755444 566777778888888888887766555554 6
Q ss_pred CCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEc
Q 010711 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283 (503)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 283 (503)
+.|+.++...|.+... |..++.+.+|..|++..|++... +.|.++..|.++.++.|.+.-........++++..|++
T Consensus 183 ~~L~~ld~~~N~L~tl-P~~lg~l~~L~~LyL~~Nki~~l--Pef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDL 259 (565)
T KOG0472|consen 183 KRLKHLDCNSNLLETL-PPELGGLESLELLYLRRNKIRFL--PEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDL 259 (565)
T ss_pred HHHHhcccchhhhhcC-ChhhcchhhhHHHHhhhcccccC--CCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeec
Confidence 7777777777665443 55677777777777777766532 25666666666666666555333334445666666666
Q ss_pred cCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHH---------------------
Q 010711 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR--------------------- 342 (503)
Q Consensus 284 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------------- 342 (503)
.++++.+. |..+..+.+|++|++++|.++.. +..++++ +|+.|.+.+|.+...--+
T Consensus 260 RdNklke~-Pde~clLrsL~rLDlSNN~is~L-p~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dg 336 (565)
T KOG0472|consen 260 RDNKLKEV-PDEICLLRSLERLDLSNNDISSL-PYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDG 336 (565)
T ss_pred cccccccC-chHHHHhhhhhhhcccCCccccC-Ccccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCC
Confidence 66655533 33444555666666666655443 2334444 555555555433211100
Q ss_pred --------------------HHhCCCCCCEeecCCCCCCHhHHHhhc--CCCCCCEEEccCCccChH-------------
Q 010711 343 --------------------KLAGLSSLKSLNLDARQITDTGLAALT--SLTGLTHLDLFGARITDS------------- 387 (503)
Q Consensus 343 --------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~------------- 387 (503)
......+.+.|++++-+++..+.+.|. .-.-.+..++++|++...
T Consensus 337 lS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~ 416 (565)
T KOG0472|consen 337 LSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTD 416 (565)
T ss_pred CCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHH
Confidence 011123555666666666655544443 222355666666655433
Q ss_pred ----------HHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCcc
Q 010711 388 ----------GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457 (503)
Q Consensus 388 ----------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 457 (503)
.+..+..+++|..|++++|.+-+ .|..++.+..|+.|++++| .+.. .|+.+..+..++.+-.++|.+
T Consensus 417 l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~-LP~e~~~lv~Lq~LnlS~N-rFr~-lP~~~y~lq~lEtllas~nqi 493 (565)
T KOG0472|consen 417 LVLSNNKISFVPLELSQLQKLTFLDLSNNLLND-LPEEMGSLVRLQTLNLSFN-RFRM-LPECLYELQTLETLLASNNQI 493 (565)
T ss_pred HHhhcCccccchHHHHhhhcceeeecccchhhh-cchhhhhhhhhheeccccc-cccc-chHHHhhHHHHHHHHhccccc
Confidence 23445667777777777766554 3555566667777777777 4544 445555566667777777777
Q ss_pred chhhHhhccCCcccceEEeccCCCCHHHHHHHHhcCCCCcccccC
Q 010711 458 TSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 502 (503)
Q Consensus 458 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~ 502 (503)
....+..+.+|.+|.+|++..|++...- +.+ +.|.+|+++.+
T Consensus 494 ~~vd~~~l~nm~nL~tLDL~nNdlq~IP-p~L--gnmtnL~hLeL 535 (565)
T KOG0472|consen 494 GSVDPSGLKNMRNLTTLDLQNNDLQQIP-PIL--GNMTNLRHLEL 535 (565)
T ss_pred cccChHHhhhhhhcceeccCCCchhhCC-hhh--ccccceeEEEe
Confidence 7777788889999999999999865432 223 37788888865
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=2.4e-26 Score=219.18 Aligned_cols=419 Identities=22% Similarity=0.234 Sum_probs=264.8
Q ss_pred eeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcEEec
Q 010711 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138 (503)
Q Consensus 59 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 138 (503)
+..|+++.|.+-+.......++-+|++|+++++ .+.. .+..+..+++|+.|+++.|.. ...|.+..++.+|+++.+
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn-~~~~-fp~~it~l~~L~~ln~s~n~i--~~vp~s~~~~~~l~~lnL 98 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNN-QISS-FPIQITLLSHLRQLNLSRNYI--RSVPSSCSNMRNLQYLNL 98 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeecccc-cccc-CCchhhhHHHHhhcccchhhH--hhCchhhhhhhcchhhee
Confidence 555666655443322233345555777777765 3322 245556667777777777643 445666677777777777
Q ss_pred cCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcH
Q 010711 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218 (503)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 218 (503)
.+ ......|..+..+++|+.|+++++.... .+..+..+..++.+..++| .. ...++... ++.+++..+.+..
T Consensus 99 ~~-n~l~~lP~~~~~lknl~~LdlS~N~f~~--~Pl~i~~lt~~~~~~~s~N-~~---~~~lg~~~-ik~~~l~~n~l~~ 170 (1081)
T KOG0618|consen 99 KN-NRLQSLPASISELKNLQYLDLSFNHFGP--IPLVIEVLTAEEELAASNN-EK---IQRLGQTS-IKKLDLRLNVLGG 170 (1081)
T ss_pred cc-chhhcCchhHHhhhcccccccchhccCC--CchhHHhhhHHHHHhhhcc-hh---hhhhcccc-chhhhhhhhhccc
Confidence 66 4566666677777777777777644322 3344455555555555555 11 22222222 6667777776655
Q ss_pred HHHHHhhCCCCCCEEEccCCCCChhhhHhhhcC-----------------CCCCEEEccCCCCChHHHHHhhCCCCCCEE
Q 010711 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI-----------------GSLKVLNLGFNEITDECLVHLKGLTNLESL 281 (503)
Q Consensus 219 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~-----------------~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 281 (503)
.+..++..+.. .+++..|.+.......+..+ ++++.|..+.|.+.... .-....+|+++
T Consensus 171 ~~~~~i~~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~--~~p~p~nl~~~ 246 (1081)
T KOG0618|consen 171 SFLIDIYNLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLD--VHPVPLNLQYL 246 (1081)
T ss_pred chhcchhhhhe--eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeec--cccccccceee
Confidence 54555555444 58888887763222111111 22333333333332110 01123466677
Q ss_pred EccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCC
Q 010711 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361 (503)
Q Consensus 282 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 361 (503)
+++.+.+...+ .++..+.+|+.+....|.+... +..+....+|+.+....|.+... +....+++.|++|++..|.+.
T Consensus 247 dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~l-p~ri~~~~~L~~l~~~~nel~yi-p~~le~~~sL~tLdL~~N~L~ 323 (1081)
T KOG0618|consen 247 DISHNNLSNLP-EWIGACANLEALNANHNRLVAL-PLRISRITSLVSLSAAYNELEYI-PPFLEGLKSLRTLDLQSNNLP 323 (1081)
T ss_pred ecchhhhhcch-HHHHhcccceEecccchhHHhh-HHHHhhhhhHHHHHhhhhhhhhC-CCcccccceeeeeeehhcccc
Confidence 77766665444 6666777777777777666433 23333446666666666655442 233456788999999888776
Q ss_pred HhHHHhhc-------------------------CCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhh
Q 010711 362 DTGLAALT-------------------------SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416 (503)
Q Consensus 362 ~~~~~~~~-------------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 416 (503)
..+.-.+. .++.|+.|.+.+|.+++.-...+...++|+.|++++|.+.......+
T Consensus 324 ~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~ 403 (1081)
T KOG0618|consen 324 SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKL 403 (1081)
T ss_pred ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHH
Confidence 54332211 12345666777788887777777888899999999998887767777
Q ss_pred hcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCCHHHHHHHHhcCCCC
Q 010711 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 496 (503)
Q Consensus 417 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 496 (503)
.+++.|+.|++++| +++..+ ..+..++.|++|...+|.+...+ .+..++.|+.+|++.|.++...+.... .+|+
T Consensus 404 ~kle~LeeL~LSGN-kL~~Lp-~tva~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lDlS~N~L~~~~l~~~~--p~p~ 477 (1081)
T KOG0618|consen 404 RKLEELEELNLSGN-KLTTLP-DTVANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLDLSCNNLSEVTLPEAL--PSPN 477 (1081)
T ss_pred hchHHhHHHhcccc-hhhhhh-HHHHhhhhhHHHhhcCCceeech--hhhhcCcceEEecccchhhhhhhhhhC--CCcc
Confidence 88889999999998 777744 67788889999999988888874 667899999999999999998888776 7799
Q ss_pred cccccC
Q 010711 497 LVSFRP 502 (503)
Q Consensus 497 L~~l~~ 502 (503)
|++|++
T Consensus 478 LkyLdl 483 (1081)
T KOG0618|consen 478 LKYLDL 483 (1081)
T ss_pred cceeec
Confidence 999875
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=1e-20 Score=200.73 Aligned_cols=199 Identities=23% Similarity=0.214 Sum_probs=102.7
Q ss_pred hhccCCCCCCEEecCCCe-----ecChhhHHHhhCCC-CCCEEEcCCCccccHHHHHHHhCCCCCcEEeccCcccccCcc
Q 010711 75 IHLKDCSNLQSLDFNFCI-----QISDGGLEHLRGLS-NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148 (503)
Q Consensus 75 ~~~~~~~~L~~L~l~~~~-----~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 148 (503)
..|.+|++|+.|.+..+. ......+..+..++ +|+.|.+.+++. ...|..+ ...+|++|++.++ .+...+
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l--~~lP~~f-~~~~L~~L~L~~s-~l~~L~ 627 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL--RCMPSNF-RPENLVKLQMQGS-KLEKLW 627 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC--CCCCCcC-CccCCcEEECcCc-cccccc
Confidence 345667777777664321 01111223344333 567777766542 3334444 3466777777663 344455
Q ss_pred ccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCC
Q 010711 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228 (503)
Q Consensus 149 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 228 (503)
..+..+++|+.|+++++..+... +.+..+++|+.|++.++......+..+..+++|+.|++++|......+..+ +++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~i--p~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~ 704 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEI--PDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK 704 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcC--CccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence 55566667777777665544322 235556667777766654444445556666666666666654332222222 456
Q ss_pred CCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccC
Q 010711 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285 (503)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 285 (503)
+|+.|++++|......+. ...+|+.|+++++.+.. .+..+ .+++|+.|.+.+
T Consensus 705 sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~ 756 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEE-FPSNL-RLENLDELILCE 756 (1153)
T ss_pred CCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccc-ccccc-cccccccccccc
Confidence 666666666543322221 12456666666655432 22111 345555555544
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=1.2e-20 Score=200.08 Aligned_cols=342 Identities=21% Similarity=0.182 Sum_probs=235.7
Q ss_pred hHHHhhCCCCCCEEEcCCCc-----cccHHHHHHHhCCC-CCcEEeccCcccccCccccccCCccccEeeccCCcCCCcc
Q 010711 98 GLEHLRGLSNLTSLSFRRNN-----AITAQGMKAFAGLI-NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171 (503)
Q Consensus 98 ~~~~~~~~~~L~~L~l~~~~-----~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 171 (503)
...+|..+++|++|.+..+. ......|..+..++ +|+.|.+.++ .....|..+ ...+|++|++.++. +. .
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~s~-l~-~ 625 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQGSK-LE-K 625 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcC-CccCCcEEECcCcc-cc-c
Confidence 45678899999999986542 11233456666654 6999999884 355556555 46889999998854 33 2
Q ss_pred ccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcC
Q 010711 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251 (503)
Q Consensus 172 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~ 251 (503)
....+..+++|+.++++++...... ..+..+++|+.|++++|......+..+..+++|+.|++++|......+..+ .+
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~i-p~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEI-PDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcC-CccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 3455677899999999876433222 247788999999999987666667788889999999999876544444433 67
Q ss_pred CCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccCh-------hhHHHhhCCC
Q 010711 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-------SGLRHLSGLT 324 (503)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-------~~~~~~~~~~ 324 (503)
++|+.|++++|......+. ...+|+.|.++++.+... +..+ .+++|++|.+.++.... ........++
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~l-P~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEF-PSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccccc-cccc-cccccccccccccchhhccccccccchhhhhccc
Confidence 8899999988754333332 246788999988876543 2222 46778888776533111 1111223357
Q ss_pred CCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEec
Q 010711 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404 (503)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 404 (503)
+|+.|++++|......+..++++++|+.|++++|......+... .+++|+.|++++|......+. ..++|+.|+++
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls 854 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---ISTNISDLNLS 854 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---cccccCEeECC
Confidence 88899998886555566778888999999998864333233332 678899999998854433222 24678889999
Q ss_pred CCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCc
Q 010711 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456 (503)
Q Consensus 405 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 456 (503)
+|.++.. +..+..+++|+.|++++|.++...+ ..+..+++|+.+++++|.
T Consensus 855 ~n~i~~i-P~si~~l~~L~~L~L~~C~~L~~l~-~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 855 RTGIEEV-PWWIEKFSNLSFLDMNGCNNLQRVS-LNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCccC-hHHHhcCCCCCEEECCCCCCcCccC-cccccccCCCeeecCCCc
Confidence 8888763 5677888899999999887777643 355678888888888884
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.83 E-value=2e-18 Score=159.92 Aligned_cols=207 Identities=29% Similarity=0.408 Sum_probs=100.2
Q ss_pred hCCCCCCEEEccCCCCChhHHHHHhcCCC---CCEEecCCCccChhhH----HHhhCC-CCCCeeeccCCCCChH----H
Q 010711 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCN---LKCLELSDTQVGSSGL----RHLSGL-TNLESINLSFTGISDG----S 340 (503)
Q Consensus 273 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~---L~~L~l~~~~~~~~~~----~~~~~~-~~L~~L~l~~~~~~~~----~ 340 (503)
..+++|+.|++++|.+....+..+..+.+ |++|+++++.+..... ..+..+ ++|+.+++++|.++.. .
T Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 33445555555555444332333322222 5555555554442211 122333 5566666666655522 1
Q ss_pred HHHHhCCCCCCEeecCCCCCCHhHH----HhhcCCCCCCEEEccCCccChHHH----HHHhcCCCCCeEEecCCCCChhH
Q 010711 341 LRKLAGLSSLKSLNLDARQITDTGL----AALTSLTGLTHLDLFGARITDSGA----AYLRNFKNLRSLEICGGGLTDAG 412 (503)
Q Consensus 341 ~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~ 412 (503)
...+..+++|++|++++|.+.+... ..+..+++|+.|++++|.+.+... ..+..+++|++|++++|.+++..
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~ 237 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG 237 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHH
Confidence 2234445566666666666654322 223344566666666666554332 22344556666666666665543
Q ss_pred HHhhhc-----CCCCceeeccCCCCCChh----hHHHHhcCCCCcEEecccCccchhhH----hhccCC-cccceEEecc
Q 010711 413 VKHIKD-----LSSLTLLNLSQNCNLTDK----TLELISGLTGLVSLNVSNSRITSAGL----RHLKPL-KNLRSLTLES 478 (503)
Q Consensus 413 ~~~~~~-----~~~L~~L~l~~~~~l~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~~-~~L~~L~l~~ 478 (503)
...+.. .+.|+.|++++| .++.. ....+..+++|+.+++++|.+++.+. ..+... +.|+++++.+
T Consensus 238 ~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 238 AAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKD 316 (319)
T ss_pred HHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence 333321 246666666666 44421 12233445566666666666664432 222223 4566666665
Q ss_pred CC
Q 010711 479 CK 480 (503)
Q Consensus 479 ~~ 480 (503)
++
T Consensus 317 ~~ 318 (319)
T cd00116 317 DS 318 (319)
T ss_pred CC
Confidence 54
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.81 E-value=1.5e-17 Score=154.08 Aligned_cols=256 Identities=28% Similarity=0.343 Sum_probs=150.1
Q ss_pred hcCCCCCEEEcCCCCCcHH----HHHHhhCCCCCCEEEccCCCCC------hhhhHhhhcCCCCCEEEccCCCCChHHHH
Q 010711 201 KGLQKLTLLNLEGCPVTAA----CLDSLSALGSLFYLNLNRCQLS------DDGCEKFSKIGSLKVLNLGFNEITDECLV 270 (503)
Q Consensus 201 ~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 270 (503)
..+.+|+.++++++.+... .+..+...+++++++++++.+. ...+..+..+++|+.|+++++.+....+.
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 3344455555555544322 1222334445555555555443 11223444555666666666655433333
Q ss_pred HhhCC---CCCCEEEccCCCCChhH----HHHHhcC-CCCCEEecCCCccChh----hHHHhhCCCCCCeeeccCCCCCh
Q 010711 271 HLKGL---TNLESLNLDSCGIGDEG----LVNLTGL-CNLKCLELSDTQVGSS----GLRHLSGLTNLESINLSFTGISD 338 (503)
Q Consensus 271 ~l~~~---~~L~~L~l~~~~~~~~~----~~~l~~~-~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~ 338 (503)
.+..+ ++|+.|++++|.+.+.. ...+..+ ++|+.+++++|.+... ....+..+++|+.|++++|.+.+
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD 179 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch
Confidence 33222 33677777666655322 2233444 6677777777766532 22344556677888887777764
Q ss_pred HHH----HHHhCCCCCCEeecCCCCCCHhHH----HhhcCCCCCCEEEccCCccChHHHHHHhc-----CCCCCeEEecC
Q 010711 339 GSL----RKLAGLSSLKSLNLDARQITDTGL----AALTSLTGLTHLDLFGARITDSGAAYLRN-----FKNLRSLEICG 405 (503)
Q Consensus 339 ~~~----~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~ 405 (503)
... ..+..+++|+.|++++|.+.+... ..+..+++|+.|++++|.+.+.....+.. .+.|++|++++
T Consensus 180 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~ 259 (319)
T cd00116 180 AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSC 259 (319)
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccC
Confidence 322 234456688888888887775443 33456788888888888887654444322 37888999988
Q ss_pred CCCChhHH----HhhhcCCCCceeeccCCCCCChhhH----HHHhcC-CCCcEEecccCcc
Q 010711 406 GGLTDAGV----KHIKDLSSLTLLNLSQNCNLTDKTL----ELISGL-TGLVSLNVSNSRI 457 (503)
Q Consensus 406 ~~~~~~~~----~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~~l-~~L~~L~l~~~~~ 457 (503)
|.+++.+. ..+..+++|+.+++++| .++.... ..+... +.|+.+++.++++
T Consensus 260 n~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 260 NDITDDGAKDLAEVLAEKESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 88874332 34455678999999998 7776533 334445 6888888887753
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.75 E-value=5.1e-20 Score=159.83 Aligned_cols=250 Identities=23% Similarity=0.228 Sum_probs=132.7
Q ss_pred CCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccC-CCCChhhhHhhhcCCCCCEEEcc
Q 010711 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNLG 260 (503)
Q Consensus 182 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~ 260 (503)
-..+++..|.++..+...|+.+++|+.|++++|.+....+.+|.++.++..|-+.+ |+++......|.++..++.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 34455555666555555566666666666666665555555566665555555554 55555555555555555555555
Q ss_pred CCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccCh--------------------------
Q 010711 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-------------------------- 314 (503)
Q Consensus 261 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-------------------------- 314 (503)
-+++.......+..++++..|.+.++.+.......+..+..++.+++..+.+..
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p 228 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSP 228 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecch
Confidence 555554444555555566555555554433333344444455555544443111
Q ss_pred ----------hhHHHhh-CCCCCCeeeccCCCC-ChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCC
Q 010711 315 ----------SGLRHLS-GLTNLESINLSFTGI-SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382 (503)
Q Consensus 315 ----------~~~~~~~-~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 382 (503)
.....+. ....+.+-.-..+.. .......|.++++|+++++++|.+++....+|.....+++|.+..|
T Consensus 229 ~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N 308 (498)
T KOG4237|consen 229 YRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN 308 (498)
T ss_pred HHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcc
Confidence 0000000 000110001111111 1112234556666666666666666666666666666666666666
Q ss_pred ccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCC
Q 010711 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431 (503)
Q Consensus 383 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 431 (503)
++.......|..+..|+.|++.+|+|+...+.+|..+.+|..|++-.|+
T Consensus 309 ~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 309 KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 6666666666666666666666666666666666666666666665543
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.72 E-value=3e-19 Score=155.15 Aligned_cols=130 Identities=24% Similarity=0.238 Sum_probs=107.6
Q ss_pred CCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccC-CCCChHHHHHhhCCCCCCEEEc
Q 010711 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNL 283 (503)
Q Consensus 205 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l 283 (503)
.-..+++..|.+....+.+|+.+++|+.|++++|.++.+.+.+|.+++.+..|-+.+ |++++.....|..+..++.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 556789999999988888999999999999999999999999999999888777766 8888777778888999999988
Q ss_pred cCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCC
Q 010711 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334 (503)
Q Consensus 284 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 334 (503)
.-+.+.-....+|..++++..|.+.+|.+.......+..+..++.+.+..+
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcC
Confidence 888887777889999999999999998776654445555666666665544
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.62 E-value=1.5e-15 Score=150.17 Aligned_cols=262 Identities=20% Similarity=0.116 Sum_probs=127.0
Q ss_pred cccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEc
Q 010711 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235 (503)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 235 (503)
.-..|+++++. ++. .+..+. ++|+.|++..|+++..+ ...++|++|++++|.+... +. ..++|+.|++
T Consensus 202 ~~~~LdLs~~~-Lts-LP~~l~--~~L~~L~L~~N~Lt~LP----~lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESG-LTT-LPDCLP--AHITTLVIPDNNLTSLP----ALPPELRTLEVSGNQLTSL-PV---LPPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCC-CCc-CCcchh--cCCCEEEccCCcCCCCC----CCCCCCcEEEecCCccCcc-cC---cccccceeec
Confidence 34556666543 332 223332 35667777666665422 1245666677766665542 11 1245666666
Q ss_pred cCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChh
Q 010711 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315 (503)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 315 (503)
++|.+... +. .+.+|+.|++++|.+... +. .+++|+.|++++|.+...+. ...+|+.|++.+|.+...
T Consensus 270 s~N~L~~L-p~---lp~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~Lp~----lp~~L~~L~Ls~N~L~~L 337 (788)
T PRK15387 270 FSNPLTHL-PA---LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSL 337 (788)
T ss_pred cCCchhhh-hh---chhhcCEEECcCCccccc-cc---cccccceeECCCCccccCCC----CcccccccccccCccccc
Confidence 66655431 11 124566666666655532 11 23556666666665543211 123455555655554332
Q ss_pred hHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcC
Q 010711 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395 (503)
Q Consensus 316 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 395 (503)
. . ..++|+.|++++|.++.... ..++|+.|++++|.+...+ . ..++|+.|++++|.+...+. ..
T Consensus 338 P-~---lp~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~Ls~N~L~~LP-~---l~~~L~~LdLs~N~Lt~LP~----l~ 401 (788)
T PRK15387 338 P-T---LPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLP-A---LPSGLKELIVSGNRLTSLPV----LP 401 (788)
T ss_pred c-c---cccccceEecCCCccCCCCC----CCcccceehhhccccccCc-c---cccccceEEecCCcccCCCC----cc
Confidence 1 0 11356666666665553211 1235555556555555321 1 12355666666665553221 12
Q ss_pred CCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHh
Q 010711 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463 (503)
Q Consensus 396 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 463 (503)
++|+.|++++|.+... +.. ..+|+.|++++| +++. .|..+.++++|+.|++++|+++...+.
T Consensus 402 s~L~~LdLS~N~LssI-P~l---~~~L~~L~Ls~N-qLt~-LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 402 SELKELMVSGNRLTSL-PML---PSGLLSLSVYRN-QLTR-LPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred cCCCEEEccCCcCCCC-Ccc---hhhhhhhhhccC-cccc-cChHHhhccCCCeEECCCCCCCchHHH
Confidence 4555666666655542 111 234555556555 4543 334455555666666666655554443
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.59 E-value=6.3e-15 Score=145.75 Aligned_cols=263 Identities=21% Similarity=0.104 Sum_probs=124.4
Q ss_pred CcEEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcC
Q 010711 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212 (503)
Q Consensus 133 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 212 (503)
-..|+++.+ .+...|..+. ++|+.|++.++. ++.. +. ..++|++|++++|+++..+ . ..++|+.|++.
T Consensus 203 ~~~LdLs~~-~LtsLP~~l~--~~L~~L~L~~N~-Lt~L-P~---lp~~Lk~LdLs~N~LtsLP-~---lp~sL~~L~Ls 270 (788)
T PRK15387 203 NAVLNVGES-GLTTLPDCLP--AHITTLVIPDNN-LTSL-PA---LPPELRTLEVSGNQLTSLP-V---LPPGLLELSIF 270 (788)
T ss_pred CcEEEcCCC-CCCcCCcchh--cCCCEEEccCCc-CCCC-CC---CCCCCcEEEecCCccCccc-C---cccccceeecc
Confidence 445555553 3334444333 255666665532 2211 11 2355666666666555321 1 12455666666
Q ss_pred CCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhH
Q 010711 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292 (503)
Q Consensus 213 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 292 (503)
+|.+... +. ...+|+.|++++|.+... +. .+++|+.|++++|.+... +. ...+|+.|.+.+|.++..+
T Consensus 271 ~N~L~~L-p~---lp~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~L-p~---lp~~L~~L~Ls~N~L~~LP 338 (788)
T PRK15387 271 SNPLTHL-PA---LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSLP 338 (788)
T ss_pred CCchhhh-hh---chhhcCEEECcCCccccc-cc---cccccceeECCCCccccC-CC---CcccccccccccCcccccc
Confidence 6654432 11 113455666666655432 11 234566666666655431 11 1234555556555554321
Q ss_pred HHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCC
Q 010711 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372 (503)
Q Consensus 293 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 372 (503)
. ...+|+.|++++|.+..... ..++|+.|.+.+|.+... +. ..++|+.|++++|.++..+. ..+
T Consensus 339 ~----lp~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~Ls~N~L~~L-P~---l~~~L~~LdLs~N~Lt~LP~----l~s 402 (788)
T PRK15387 339 T----LPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSL-PA---LPSGLKELIVSGNRLTSLPV----LPS 402 (788)
T ss_pred c----cccccceEecCCCccCCCCC----CCcccceehhhccccccC-cc---cccccceEEecCCcccCCCC----ccc
Confidence 1 11356666666665543211 123455555655555431 11 12356666666665554211 124
Q ss_pred CCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHH
Q 010711 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441 (503)
Q Consensus 373 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 441 (503)
+|+.|++++|++...+. . ..+|+.|++++|.++. .+..+..+++|+.|++++| .++...+..+
T Consensus 403 ~L~~LdLS~N~LssIP~-l---~~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N-~Ls~~~~~~L 465 (788)
T PRK15387 403 ELKELMVSGNRLTSLPM-L---PSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGN-PLSERTLQAL 465 (788)
T ss_pred CCCEEEccCCcCCCCCc-c---hhhhhhhhhccCcccc-cChHHhhccCCCeEECCCC-CCCchHHHHH
Confidence 56666666665554321 1 2345556666666554 2444555566666666666 4555444443
No 19
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.58 E-value=3.2e-14 Score=122.45 Aligned_cols=191 Identities=24% Similarity=0.315 Sum_probs=116.9
Q ss_pred cCCCCCEEecCCCccChhhHH----HhhCCCCCCeeeccCCCCChHHHHHH-------------hCCCCCCEeecCCCCC
Q 010711 298 GLCNLKCLELSDTQVGSSGLR----HLSGLTNLESINLSFTGISDGSLRKL-------------AGLSSLKSLNLDARQI 360 (503)
Q Consensus 298 ~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~-------------~~~~~L~~L~l~~~~~ 360 (503)
.+|+|+++++++|.++...+. .++++..|++|.+.+|++....-..+ +.-+.|+++...+|.+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 445566666666655544332 23455666666666665554332221 1335777777777766
Q ss_pred CHhHH----HhhcCCCCCCEEEccCCccChHH----HHHHhcCCCCCeEEecCCCCChhHHH----hhhcCCCCceeecc
Q 010711 361 TDTGL----AALTSLTGLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVK----HIKDLSSLTLLNLS 428 (503)
Q Consensus 361 ~~~~~----~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~ 428 (503)
...+. ..|...+.|+.+.++.|.+...+ ...+.++++|+.|++.+|.++..+.. .++.+++|+.|+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 54332 34556677777777777665443 34567788888888888877654433 34556778888888
Q ss_pred CCCCCChhhHHHH----h-cCCCCcEEecccCccchhhHh----hccCCcccceEEeccCCC--CHHHHHHH
Q 010711 429 QNCNLTDKTLELI----S-GLTGLVSLNVSNSRITSAGLR----HLKPLKNLRSLTLESCKV--TANDIKRL 489 (503)
Q Consensus 429 ~~~~l~~~~~~~~----~-~l~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~--~~~~~~~~ 489 (503)
+| .+.......+ . ..|+|+.|.+.+|.++..... .+...|.|..|++++|.+ ...++..+
T Consensus 250 dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei 320 (382)
T KOG1909|consen 250 DC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEI 320 (382)
T ss_pred cc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHH
Confidence 88 6665443332 2 467888888888887765432 334567888888888887 34444433
No 20
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.53 E-value=8.5e-14 Score=119.88 Aligned_cols=234 Identities=25% Similarity=0.305 Sum_probs=136.9
Q ss_pred HHhhhcCCCCCEEEcCCCCCcHHHHH----HhhCCCCCCEEEccCCCC---Chhhh-------HhhhcCCCCCEEEccCC
Q 010711 197 IAYLKGLQKLTLLNLEGCPVTAACLD----SLSALGSLFYLNLNRCQL---SDDGC-------EKFSKIGSLKVLNLGFN 262 (503)
Q Consensus 197 ~~~l~~~~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~---~~~~~-------~~l~~~~~L~~L~l~~~ 262 (503)
...+.....++.+++++|.+...... .+.+.++|+..++++.-. ....+ ..+..+++|++++++.|
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 34445556677777777766554333 234455666666654311 11122 23335567788888777
Q ss_pred CCChHHH----HHhhCCCCCCEEEccCCCCChhHHHHH-------------hcCCCCCEEecCCCccChhh----HHHhh
Q 010711 263 EITDECL----VHLKGLTNLESLNLDSCGIGDEGLVNL-------------TGLCNLKCLELSDTQVGSSG----LRHLS 321 (503)
Q Consensus 263 ~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~l-------------~~~~~L~~L~l~~~~~~~~~----~~~~~ 321 (503)
.+....+ ..+.++..|++|.|.+|.++...-..+ ..-++|+.+....|++...+ ...+.
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ 182 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence 6554433 234567788888888887765433332 23456777777777665432 23455
Q ss_pred CCCCCCeeeccCCCCChHH----HHHHhCCCCCCEeecCCCCCCHhHH----HhhcCCCCCCEEEccCCccChHHHHHH-
Q 010711 322 GLTNLESINLSFTGISDGS----LRKLAGLSSLKSLNLDARQITDTGL----AALTSLTGLTHLDLFGARITDSGAAYL- 392 (503)
Q Consensus 322 ~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~- 392 (503)
..+.|+.+.+..|.+.... ...+..+++|+.|++.+|.++..+. ..++.+++|+.|++++|.+...+..++
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence 5677777777776554332 2345567777777777777765443 334456677777777776666554443
Q ss_pred ----hcCCCCCeEEecCCCCChhHHHhh----hcCCCCceeeccCC
Q 010711 393 ----RNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQN 430 (503)
Q Consensus 393 ----~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~ 430 (503)
...|+|+.|.+.+|.|+......+ ...|.|.+|+|++|
T Consensus 263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 335677777777777665443322 22366666666666
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.51 E-value=5.8e-14 Score=139.88 Aligned_cols=149 Identities=17% Similarity=0.187 Sum_probs=71.3
Q ss_pred CCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEec
Q 010711 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404 (503)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 404 (503)
+|+.|++++|.++... ..+ .++|+.|++++|.++..+. . -.++|+.|++++|.++..+. .+ +++|+.|+++
T Consensus 284 sL~~L~Ls~N~Lt~LP-~~l--p~sL~~L~Ls~N~Lt~LP~-~--l~~sL~~L~Ls~N~Lt~LP~-~l--~~sL~~L~Ls 354 (754)
T PRK15370 284 ELRYLSVYDNSIRTLP-AHL--PSGITHLNVQSNSLTALPE-T--LPPGLKTLEAGENALTSLPA-SL--PPELQVLDVS 354 (754)
T ss_pred CCcEEECCCCccccCc-ccc--hhhHHHHHhcCCccccCCc-c--ccccceeccccCCccccCCh-hh--cCcccEEECC
Confidence 4555555555444311 111 1245555555555543211 1 12455666666665554321 22 2456666666
Q ss_pred CCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhh---HhhccCCcccceEEeccCCC
Q 010711 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLKPLKNLRSLTLESCKV 481 (503)
Q Consensus 405 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~ 481 (503)
+|.+... +..+ .++|+.|+|++| .++..++. +. ..|+.|++++|++...+ +.....++++..|++.+|++
T Consensus 355 ~N~L~~L-P~~l--p~~L~~LdLs~N-~Lt~LP~~-l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 355 KNQITVL-PETL--PPTITTLDVSRN-ALTNLPEN-LP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred CCCCCcC-Chhh--cCCcCEEECCCC-cCCCCCHh-HH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 6655532 2222 245666666666 45543322 21 24666666666655432 12223345666666666666
Q ss_pred CHHHHHHH
Q 010711 482 TANDIKRL 489 (503)
Q Consensus 482 ~~~~~~~~ 489 (503)
+...++.+
T Consensus 428 s~~tl~~L 435 (754)
T PRK15370 428 SERTIQNM 435 (754)
T ss_pred cHHHHHHH
Confidence 65554443
No 22
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.46 E-value=1.5e-13 Score=121.17 Aligned_cols=296 Identities=30% Similarity=0.399 Sum_probs=182.3
Q ss_pred CCCEEEcCCCCCcHH-HHH-HhhCCCCCCEEEccCCCC-ChhhhHhh-hcCCCCCEEEccCC-CCChHHHH-HhhCCCCC
Q 010711 205 KLTLLNLEGCPVTAA-CLD-SLSALGSLFYLNLNRCQL-SDDGCEKF-SKIGSLKVLNLGFN-EITDECLV-HLKGLTNL 278 (503)
Q Consensus 205 ~L~~L~l~~~~~~~~-~~~-~l~~l~~L~~L~l~~~~~-~~~~~~~l-~~~~~L~~L~l~~~-~~~~~~~~-~l~~~~~L 278 (503)
.|+.|.+.|+.-... ... .-..++++++|.+.++.. ++.....+ ..+++++.+++..+ .+++.... ....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 455566666532211 111 123556666666666542 22222333 24567777777663 34443333 33567778
Q ss_pred CEEEccCC-CCChhHHHHH-hcCCCCCEEecCCCcc-ChhhHHHh-hCCCCCCeeeccCC-CCChHHHHHHh-CCCCCCE
Q 010711 279 ESLNLDSC-GIGDEGLVNL-TGLCNLKCLELSDTQV-GSSGLRHL-SGLTNLESINLSFT-GISDGSLRKLA-GLSSLKS 352 (503)
Q Consensus 279 ~~L~l~~~-~~~~~~~~~l-~~~~~L~~L~l~~~~~-~~~~~~~~-~~~~~L~~L~l~~~-~~~~~~~~~~~-~~~~L~~ 352 (503)
+++++++| .+.+.....+ .++..++.+...++.- ........ ..++.+..+++..| .+++.....+. .+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 88887777 4443322222 3444455555554421 11111111 23455666666555 45554433333 4678888
Q ss_pred eecCCC-CCCHhHHHhhc-CCCCCCEEEccCCc-cChHHHHHH-hcCCCCCeEEecCCCCChhH-HHhh-hcCCCCceee
Q 010711 353 LNLDAR-QITDTGLAALT-SLTGLTHLDLFGAR-ITDSGAAYL-RNFKNLRSLEICGGGLTDAG-VKHI-KDLSSLTLLN 426 (503)
Q Consensus 353 L~l~~~-~~~~~~~~~~~-~~~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~-~~~~-~~~~~L~~L~ 426 (503)
+..+++ .+++.....++ ++++|+.+.+.+|+ +++.....+ .+++.|+.+++.++...... ..++ .+++.|+++.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 888774 45555555554 78899999998884 444444444 46788999999887643332 2333 4679999999
Q ss_pred ccCCCCCChhhHHHH----hcCCCCcEEecccCc-cchhhHhhccCCcccceEEeccC-CCCHHHHHHHHhcCCCCcccc
Q 010711 427 LSQNCNLTDKTLELI----SGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQSRDLPNLVSF 500 (503)
Q Consensus 427 l~~~~~l~~~~~~~~----~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~l 500 (503)
++.|..+++.....+ .++..|+.+.+++|+ +++...+++..+++|+++++-+| .++..+++.+. ..+|+++..
T Consensus 379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~-~~lp~i~v~ 457 (483)
T KOG4341|consen 379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFA-THLPNIKVH 457 (483)
T ss_pred hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHH-hhCccceeh
Confidence 999977777643333 346789999999995 55666788899999999999999 78999999988 899998764
Q ss_pred c
Q 010711 501 R 501 (503)
Q Consensus 501 ~ 501 (503)
.
T Consensus 458 a 458 (483)
T KOG4341|consen 458 A 458 (483)
T ss_pred h
Confidence 3
No 23
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.46 E-value=1.1e-13 Score=122.02 Aligned_cols=230 Identities=25% Similarity=0.360 Sum_probs=133.3
Q ss_pred CCeeEEEccCCCC-Chhhhhhc-cCCCCCCEEecCCCeecChhhHHHhh-CCCCCCEEEcCCCccccHHHHHHHh-CCCC
Q 010711 57 SSLLSVDLSGSDV-TDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFA-GLIN 132 (503)
Q Consensus 57 ~~l~~L~l~~~~~-~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~ 132 (503)
..++.|++.+..- .+.....+ .+||++++|.+.+|..+++.....++ .|++|++|++..|..+++...+.+. .|++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4678888887433 23333334 67888888888888877777666665 7888888888887777776666443 7888
Q ss_pred CcEEeccCcccccCcc--ccccCCccccEeeccCCcCCCcccccccc-CCCCCCEEEeec-ccCCchhHHhh-hcCCCCC
Q 010711 133 LVKLDLERCTRIHGGL--VNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISC-SKVTDSGIAYL-KGLQKLT 207 (503)
Q Consensus 133 L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~-~~~~~~~~~~l-~~~~~L~ 207 (503)
|++|+++.|+.+...- .....+..++.+...+|............ .+..+.++++.. +.+++.....+ ..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 8888888887666521 23455666777766666655443333222 344455555433 34554443333 4566777
Q ss_pred EEEcCCCCC-cHHHHHHhh-CCCCCCEEEccCCC-CChhhhHhhh-cCCCCCEEEccCCCCChH--HHHHhhCCCCCCEE
Q 010711 208 LLNLEGCPV-TAACLDSLS-ALGSLFYLNLNRCQ-LSDDGCEKFS-KIGSLKVLNLGFNEITDE--CLVHLKGLTNLESL 281 (503)
Q Consensus 208 ~L~l~~~~~-~~~~~~~l~-~l~~L~~L~l~~~~-~~~~~~~~l~-~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L 281 (503)
.+..+++.. +......++ ..++|+.+.+..|+ ++......++ +++.|+.+++..+..... ....-.+++.|+.+
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 777777643 233333333 45677777776654 2222222332 345566666555432211 11122345566666
Q ss_pred EccCC
Q 010711 282 NLDSC 286 (503)
Q Consensus 282 ~l~~~ 286 (503)
.++.|
T Consensus 378 slshc 382 (483)
T KOG4341|consen 378 SLSHC 382 (483)
T ss_pred Chhhh
Confidence 66555
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.45 E-value=1.2e-14 Score=147.11 Aligned_cols=256 Identities=19% Similarity=0.182 Sum_probs=165.1
Q ss_pred CcHHHHHHHHHHHHhccccCcccc-cccccCceeEEecCCCCCCChhHH-----H-----------HHHhcCCCeeEEEc
Q 010711 2 LPRDISQQIFNELVYSRCLTEVSL-EAFRDCALQDLCLGQYPGVNDKWM-----D-----------VIASQGSSLLSVDL 64 (503)
Q Consensus 2 ~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~~~~-----~-----------~~~~~~~~l~~L~l 64 (503)
..++.++.|+.+|+++++++.... ..+..|++||+..+-+..+++.+. . .-.......|+..+
T Consensus 451 ~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~ 530 (889)
T KOG4658|consen 451 TAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSL 530 (889)
T ss_pred chhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEE
Confidence 357899999999999999877665 355578899886542221111000 0 00112345677777
Q ss_pred cCCCCChhhhhhccCCCCCCEEecCCCee-cChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcEEeccCccc
Q 010711 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQ-ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143 (503)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 143 (503)
.++.+.. ...-..+++|+.|-+.++.. +.....+.|..+|.|++|++++|.. ...+|..++.+.+||+|++++ +.
T Consensus 531 ~~~~~~~--~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~-l~~LP~~I~~Li~LryL~L~~-t~ 606 (889)
T KOG4658|consen 531 MNNKIEH--IAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS-LSKLPSSIGELVHLRYLDLSD-TG 606 (889)
T ss_pred eccchhh--ccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc-cCcCChHHhhhhhhhcccccC-CC
Confidence 7665532 12235677899999998642 5556667788999999999999864 367899999999999999999 67
Q ss_pred ccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeeccc--CCchhHHhhhcCCCCCEEEcCCCCCcHHHH
Q 010711 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK--VTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221 (503)
Q Consensus 144 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 221 (503)
+...|..+++++.|.+|++..+...... +.....+.+|++|.+.... ........+.++.+|+.+....... ...
T Consensus 607 I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~ 683 (889)
T KOG4658|consen 607 ISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLL 683 (889)
T ss_pred ccccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhH
Confidence 8899999999999999999986654433 4555669999999997654 2333445556666666666644332 111
Q ss_pred HHhhCCCCCCE----EEccCCCCChhhhHhhhcCCCCCEEEccCCCCC
Q 010711 222 DSLSALGSLFY----LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265 (503)
Q Consensus 222 ~~l~~l~~L~~----L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 265 (503)
..+..+..|.. +.+..+.. ...+..+..+.+|+.|.+..+.+.
T Consensus 684 e~l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 684 EDLLGMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred hhhhhhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCc
Confidence 22233333332 22211111 122334455667777777666554
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.41 E-value=9.3e-13 Score=131.38 Aligned_cols=228 Identities=18% Similarity=0.209 Sum_probs=111.4
Q ss_pred CCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEc
Q 010711 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259 (503)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 259 (503)
++|+.|++++|.++..+. .+ .++|+.|++++|.+... +..+. ++|+.|++++|.+.. .+..+. .+|+.|++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~-~l--~~nL~~L~Ls~N~LtsL-P~~l~--~~L~~L~Ls~N~L~~-LP~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELKSLPE-NL--QGNIKTLYANSNQLTSI-PATLP--DTIQEMELSINRITE-LPERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCCcCCh-hh--ccCCCEEECCCCccccC-Chhhh--ccccEEECcCCccCc-CChhHh--CCCCEEEC
Confidence 356666666665553322 11 13566666666655432 22221 245555555555542 222221 34555555
Q ss_pred cCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChH
Q 010711 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339 (503)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 339 (503)
++|.+.. .+..+ +++|+.|++++|+++ .... .+ .++|+.|++++|.++..
T Consensus 270 s~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt------------------------~LP~-~l--p~sL~~L~Ls~N~Lt~L 319 (754)
T PRK15370 270 FHNKISC-LPENL--PEELRYLSVYDNSIR------------------------TLPA-HL--PSGITHLNVQSNSLTAL 319 (754)
T ss_pred cCCccCc-ccccc--CCCCcEEECCCCccc------------------------cCcc-cc--hhhHHHHHhcCCccccC
Confidence 5554442 22111 134455555544443 2110 00 12455555555554432
Q ss_pred HHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcC
Q 010711 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419 (503)
Q Consensus 340 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 419 (503)
. ..+ .++|+.|.+++|.++..+ ..+ .++|+.|++++|.+...+. .+ .++|+.|++++|.++.... .+.
T Consensus 320 P-~~l--~~sL~~L~Ls~N~Lt~LP-~~l--~~sL~~L~Ls~N~L~~LP~-~l--p~~L~~LdLs~N~Lt~LP~-~l~-- 387 (754)
T PRK15370 320 P-ETL--PPGLKTLEAGENALTSLP-ASL--PPELQVLDVSKNQITVLPE-TL--PPTITTLDVSRNALTNLPE-NLP-- 387 (754)
T ss_pred C-ccc--cccceeccccCCccccCC-hhh--cCcccEEECCCCCCCcCCh-hh--cCCcCEEECCCCcCCCCCH-hHH--
Confidence 1 111 245666666666665432 222 2567777777776654322 22 3567777777777665322 222
Q ss_pred CCCceeeccCCCCCChhh---HHHHhcCCCCcEEecccCccch
Q 010711 420 SSLTLLNLSQNCNLTDKT---LELISGLTGLVSLNVSNSRITS 459 (503)
Q Consensus 420 ~~L~~L~l~~~~~l~~~~---~~~~~~l~~L~~L~l~~~~~~~ 459 (503)
+.|+.|++++| ++...+ +.....++++..|++.+|+++.
T Consensus 388 ~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 388 AALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred HHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 35677777777 555432 2233345677777777777664
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=8.9e-13 Score=116.98 Aligned_cols=210 Identities=25% Similarity=0.279 Sum_probs=124.9
Q ss_pred hCCCCCCEEEccCCCCChhHH-HHHhcCCCCCEEecCCCccChh--hHHHhhCCCCCCeeeccCCCCChHHHHH-HhCCC
Q 010711 273 KGLTNLESLNLDSCGIGDEGL-VNLTGLCNLKCLELSDTQVGSS--GLRHLSGLTNLESINLSFTGISDGSLRK-LAGLS 348 (503)
Q Consensus 273 ~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~ 348 (503)
..+.+|+.+.+.++.....+. .....+++++.|+++.|-+... .....+.+|+|+.|+++.|.+....... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 456778888888875543322 3455678888888887755432 2344567788888888877554221111 11457
Q ss_pred CCCEeecCCCCCCHhHHH-hhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChh-HHHhhhcCCCCceee
Q 010711 349 SLKSLNLDARQITDTGLA-ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA-GVKHIKDLSSLTLLN 426 (503)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~ 426 (503)
.|+.|.++.|.++..... ....+|+|+.|.+.+|...........-+..|++|+|++|++.+. .....+.+|.|..|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 777788877777754332 334677777777777742222222223456677777777765442 233456677777777
Q ss_pred ccCCCCCChhhH-HH-----HhcCCCCcEEecccCccchhhH-hhccCCcccceEEeccCCCCH
Q 010711 427 LSQNCNLTDKTL-EL-----ISGLTGLVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESCKVTA 483 (503)
Q Consensus 427 l~~~~~l~~~~~-~~-----~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~ 483 (503)
++.| .++.+.. +. ...+++|+.|++..|++.+... ..+...++|+.|.+.+|+++.
T Consensus 278 ls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 278 LSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 7777 4444321 11 2456777777777777654322 344456677777777776554
No 27
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1e-11 Score=104.77 Aligned_cols=195 Identities=22% Similarity=0.237 Sum_probs=98.0
Q ss_pred CCEEecCCCccChhh-HHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCC-CCCCHhHHH-hhcCCCCCCEEE
Q 010711 302 LKCLELSDTQVGSSG-LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA-ALTSLTGLTHLD 378 (503)
Q Consensus 302 L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~-~~~~~~~L~~L~ 378 (503)
|+++++++..+.... ...++.|.+|+.+.+.+..+.+.....++.-.+|+.++++. +.+++.+.. .+.+|..|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 444444444333221 22234445555555555555555555555555555555554 244443332 233555555555
Q ss_pred ccCCccChHHHHHH-hc-CCCCCeEEecCCC--C-ChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecc
Q 010711 379 LFGARITDSGAAYL-RN-FKNLRSLEICGGG--L-TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453 (503)
Q Consensus 379 l~~~~~~~~~~~~~-~~-~~~L~~L~l~~~~--~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~ 453 (503)
++.|.......... .+ -+.|+.|+++|+. + ..........+|.|..||++.|..++......|.+++.|+.|.++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 55554433322111 11 2455566665531 1 111223335567777777777766666555666677777777777
Q ss_pred cCcc-chhhHhhccCCcccceEEeccCCCCHHHHHHHHhcCCCCcc
Q 010711 454 NSRI-TSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 498 (503)
Q Consensus 454 ~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 498 (503)
.|.. .....-.+...|+|.+|++.||-- +...+.+. ..+|+|+
T Consensus 347 RCY~i~p~~~~~l~s~psl~yLdv~g~vs-dt~mel~~-e~~~~lk 390 (419)
T KOG2120|consen 347 RCYDIIPETLLELNSKPSLVYLDVFGCVS-DTTMELLK-EMLSHLK 390 (419)
T ss_pred hhcCCChHHeeeeccCcceEEEEeccccC-chHHHHHH-HhCcccc
Confidence 7742 222223445677777777777721 22233333 4566654
No 28
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.21 E-value=1.1e-13 Score=106.74 Aligned_cols=156 Identities=18% Similarity=0.177 Sum_probs=87.9
Q ss_pred CCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcEEeccCcccccCccccccCCccccE
Q 010711 80 CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159 (503)
Q Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 159 (503)
+.+..+|.+++| .++.. +..++.+.+|+.|+++++.. ...|..++.++.|+.|+++- ......|..++.+|.|++
T Consensus 32 ~s~ITrLtLSHN-Kl~~v-ppnia~l~nlevln~~nnqi--e~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 32 MSNITRLTLSHN-KLTVV-PPNIAELKNLEVLNLSNNQI--EELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEV 106 (264)
T ss_pred hhhhhhhhcccC-ceeec-CCcHHHhhhhhhhhcccchh--hhcChhhhhchhhhheecch-hhhhcCccccCCCchhhh
Confidence 344444444443 22211 23344445555555555432 34455555555555555554 234445555666666666
Q ss_pred eeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCC
Q 010711 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239 (503)
Q Consensus 160 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 239 (503)
|++.+++.-....+..+..+..|+.|+++.+.+. ..+..++++++|+.|.+..|.+... +..++.+..|+.|.+.++.
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~l-pkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSL-PKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhC-cHHHHHHHHHHHHhcccce
Confidence 6666655545555566666666777777766665 3345566777777777777665443 4556666777777777766
Q ss_pred CCh
Q 010711 240 LSD 242 (503)
Q Consensus 240 ~~~ 242 (503)
+..
T Consensus 185 l~v 187 (264)
T KOG0617|consen 185 LTV 187 (264)
T ss_pred eee
Confidence 653
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3e-12 Score=113.66 Aligned_cols=212 Identities=22% Similarity=0.252 Sum_probs=152.9
Q ss_pred hcCCCCCEEEccCCCCChHHH-HHhhCCCCCCEEEccCCCCChh--HHHHHhcCCCCCEEecCCCccChhhHH-HhhCCC
Q 010711 249 SKIGSLKVLNLGFNEITDECL-VHLKGLTNLESLNLDSCGIGDE--GLVNLTGLCNLKCLELSDTQVGSSGLR-HLSGLT 324 (503)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~ 324 (503)
+++.+|+.+.+.++.+..... .....|++++.|+++.+-+... .......+|+|+.|+++.|.+...... .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 467889999998887664332 3567799999999999854432 233445799999999999876432111 112568
Q ss_pred CCCeeeccCCCCChHHH-HHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHH-HHHHhcCCCCCeEE
Q 010711 325 NLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG-AAYLRNFKNLRSLE 402 (503)
Q Consensus 325 ~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~ 402 (503)
+|+.|.++.|+++.... .....+|+|+.|++..|............+..|++|++++|.+.+.. ......+|.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 99999999999885443 44557999999999998421111122335678999999999887754 23457899999999
Q ss_pred ecCCCCChhHHHhh------hcCCCCceeeccCCCCCChh-hHHHHhcCCCCcEEecccCccchhh
Q 010711 403 ICGGGLTDAGVKHI------KDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSNSRITSAG 461 (503)
Q Consensus 403 l~~~~~~~~~~~~~------~~~~~L~~L~l~~~~~l~~~-~~~~~~~l~~L~~L~l~~~~~~~~~ 461 (503)
++.+++........ ..+++|++|+++.| ++.+. ....+..+++|+.|.+.+|++....
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~ 342 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRITLNYLNKET 342 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhccchhhhhhcccccccccc
Confidence 99998876543332 44699999999999 66543 3456677899999999999887643
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.19 E-value=1.2e-11 Score=100.06 Aligned_cols=127 Identities=27% Similarity=0.324 Sum_probs=41.1
Q ss_pred CCCCCCEeecCCCCCCHhHHHhhc-CCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCce
Q 010711 346 GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424 (503)
Q Consensus 346 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 424 (503)
+..++++|++.++.++.. +.++ .+.+|+.|++++|.++... .+..++.|++|++++|.|+.........+|+|+.
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 344677777777777652 3343 4567777777777776542 4556777777777777776643322234677777
Q ss_pred eeccCCCCCChhh-HHHHhcCCCCcEEecccCccchhhH---hhccCCcccceEEec
Q 010711 425 LNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGL---RHLKPLKNLRSLTLE 477 (503)
Q Consensus 425 L~l~~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~ 477 (503)
|++++| ++.... ...+..+++|+.|++.+|++.+..- ..+..+|+|+.||-.
T Consensus 93 L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 93 LYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred EECcCC-cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 777777 554432 2345566777777777776665321 223456666666443
No 31
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1e-10 Score=98.86 Aligned_cols=179 Identities=24% Similarity=0.286 Sum_probs=100.5
Q ss_pred CCCEEEccCCCCChhH-HHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCC-CCChHHHH-HHhCCCCCCEe
Q 010711 277 NLESLNLDSCGIGDEG-LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLR-KLAGLSSLKSL 353 (503)
Q Consensus 277 ~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~-~~~~~~~L~~L 353 (503)
.|+++++++..++... ...+..|.+|+.|.+.++++.+.....+..-.+|+.++++.+ +++..... .+.+|+.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 3555566555554322 223445556666666666665555555555566666666655 44443332 34456666666
Q ss_pred ecCCCCCCHhHHHhh-c-CCCCCCEEEccCCc--cCh-HHHHHHhcCCCCCeEEecCCC-CChhHHHhhhcCCCCceeec
Q 010711 354 NLDARQITDTGLAAL-T-SLTGLTHLDLFGAR--ITD-SGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLLNL 427 (503)
Q Consensus 354 ~l~~~~~~~~~~~~~-~-~~~~L~~L~l~~~~--~~~-~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l 427 (503)
.++.|.+........ . --++|+.|+++|+. +.. ........+|+|.+|+++++. +++.....|.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 666655443322211 1 22566677776652 111 112223567777777777653 45545556666777777777
Q ss_pred cCCCCCChhhHHHHhcCCCCcEEecccC
Q 010711 428 SQNCNLTDKTLELISGLTGLVSLNVSNS 455 (503)
Q Consensus 428 ~~~~~l~~~~~~~~~~l~~L~~L~l~~~ 455 (503)
+.|..+.....-.+...|+|.+|++.+|
T Consensus 346 sRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcCCChHHeeeeccCcceEEEEeccc
Confidence 7775555544445556777777777776
No 32
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.13 E-value=5.3e-13 Score=103.02 Aligned_cols=156 Identities=21% Similarity=0.152 Sum_probs=128.6
Q ss_pred CCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcE
Q 010711 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (503)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (503)
.+++++|.++++.++ ..+..++.+.+|++|++++| ++. ..+..++.+++||.|++..+.. ...|..|+.+|.|++
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nn-qie-~lp~~issl~klr~lnvgmnrl--~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNN-QIE-ELPTSISSLPKLRILNVGMNRL--NILPRGFGSFPALEV 106 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccc-hhh-hcChhhhhchhhhheecchhhh--hcCccccCCCchhhh
Confidence 567889999999987 67788899999999999986 554 4577889999999999998874 567999999999999
Q ss_pred EeccCccccc-CccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCC
Q 010711 136 LDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214 (503)
Q Consensus 136 L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 214 (503)
|++..+.... ..|..+--++.|+.|+++++.. ...+..++++++|+.|.+..+.+- ..+..++.+.+|++|.+.+|
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndf--e~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF--EILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCc--ccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 9999854333 3456677788999999997543 347788999999999999988776 45677889999999999999
Q ss_pred CCcHH
Q 010711 215 PVTAA 219 (503)
Q Consensus 215 ~~~~~ 219 (503)
.++..
T Consensus 184 rl~vl 188 (264)
T KOG0617|consen 184 RLTVL 188 (264)
T ss_pred eeeec
Confidence 87654
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=4.4e-11 Score=96.82 Aligned_cols=125 Identities=30% Similarity=0.401 Sum_probs=33.1
Q ss_pred CCCCeeeccCCCCChHHHHHHh-CCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEE
Q 010711 324 TNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402 (503)
Q Consensus 324 ~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 402 (503)
.++++|++.++.++.. +.++ .+.+|+.|++++|.++. .+.+..++.|+.|++++|+++.........+|+|++|.
T Consensus 19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccc--cchhhhhcCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 3455555555555432 2232 34555566666655554 23344555556666666555554322223455566666
Q ss_pred ecCCCCChhH-HHhhhcCCCCceeeccCCCCCChh---hHHHHhcCCCCcEEecc
Q 010711 403 ICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDK---TLELISGLTGLVSLNVS 453 (503)
Q Consensus 403 l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~---~~~~~~~l~~L~~L~l~ 453 (503)
+++|.|.+.. ...+..+++|+.|++.+|+ ++.. -...+..+|+|+.||-.
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCE
Confidence 6555554321 2334445555566665552 2211 12334455555555543
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.05 E-value=4e-11 Score=121.85 Aligned_cols=183 Identities=22% Similarity=0.269 Sum_probs=124.7
Q ss_pred cCCCeeEEEccCCC--CChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCC
Q 010711 55 QGSSLLSVDLSGSD--VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132 (503)
Q Consensus 55 ~~~~l~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 132 (503)
.++.+++|-+.++. +.......|..++.|++||+++|... ...|..++.+-+||||+++++.. ..+|..+.++..
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l-~~LP~~I~~Li~LryL~L~~t~I--~~LP~~l~~Lk~ 619 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL-SKLPSSIGELVHLRYLDLSDTGI--SHLPSGLGNLKK 619 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc-CcCChHHhhhhhhhcccccCCCc--cccchHHHHHHh
Confidence 46679999999875 44444455789999999999997544 34688999999999999999974 578999999999
Q ss_pred CcEEeccCcccccCccccccCCccccEeeccCCc-CCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCC----
Q 010711 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN-CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT---- 207 (503)
Q Consensus 133 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~---- 207 (503)
|.+|++..+......+.....+++||+|.+.... ..+......+..+.+|+.+.+..... .....+.....|.
T Consensus 620 L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~ 697 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQ 697 (889)
T ss_pred hheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhH
Confidence 9999999866555555556679999999998643 22223334555666666666643322 1122222333322
Q ss_pred EEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChh
Q 010711 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243 (503)
Q Consensus 208 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 243 (503)
.+.+.++.... ....+..+.+|+.|.+.++.+.+.
T Consensus 698 ~l~~~~~~~~~-~~~~~~~l~~L~~L~i~~~~~~e~ 732 (889)
T KOG4658|consen 698 SLSIEGCSKRT-LISSLGSLGNLEELSILDCGISEI 732 (889)
T ss_pred hhhhcccccce-eecccccccCcceEEEEcCCCchh
Confidence 23322332222 234567788999999999887643
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.91 E-value=2.1e-10 Score=97.11 Aligned_cols=126 Identities=25% Similarity=0.349 Sum_probs=52.9
Q ss_pred CCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeecc
Q 010711 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428 (503)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 428 (503)
.|+++++++|.++... ....-.|.++.|+++.|.+..... ++.+++|++|++++|.++.. ..+-..+.+.++|.++
T Consensus 285 ~LtelDLS~N~I~~iD-ESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLITQID-ESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchhhhh-hhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhh-hhhHhhhcCEeeeehh
Confidence 3444444444444321 222333444455554444443321 34444555555554444332 1122233444445444
Q ss_pred CCCCCChhhHHHHhcCCCCcEEecccCccchhh-HhhccCCcccceEEeccCCC
Q 010711 429 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAG-LRHLKPLKNLRSLTLESCKV 481 (503)
Q Consensus 429 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~ 481 (503)
.| .+... ..++.+-+|..||+++|++.... ..+++++|.|+.+.+.+|++
T Consensus 361 ~N-~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 361 QN-KIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hh-hHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 44 22221 12333444455555555444432 13444455555555555543
No 36
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.90 E-value=1.6e-08 Score=84.73 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=13.0
Q ss_pred hhcCCCCCEEEcCCCCCcHHHHHH
Q 010711 200 LKGLQKLTLLNLEGCPVTAACLDS 223 (503)
Q Consensus 200 l~~~~~L~~L~l~~~~~~~~~~~~ 223 (503)
+..+..+..++++||.+......+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~ 49 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEE 49 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHH
Confidence 344556666666666665543333
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.82 E-value=1.4e-09 Score=72.28 Aligned_cols=61 Identities=34% Similarity=0.438 Sum_probs=45.6
Q ss_pred CCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCC
Q 010711 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481 (503)
Q Consensus 420 ~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 481 (503)
|+|++|++++| +++...+..|.++++|+.|++++|.+..+.+..+..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46677777777 77776667777777777777777777777777777778888888877764
No 38
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.81 E-value=7.9e-08 Score=80.67 Aligned_cols=227 Identities=21% Similarity=0.289 Sum_probs=124.4
Q ss_pred HhhCCCCCCEEEccCCCCChhHHHHHhc----CCCCCEEecCCCccCh---hh-------HHHhhCCCCCCeeeccCCCC
Q 010711 271 HLKGLTNLESLNLDSCGIGDEGLVNLTG----LCNLKCLELSDTQVGS---SG-------LRHLSGLTNLESINLSFTGI 336 (503)
Q Consensus 271 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~----~~~L~~L~l~~~~~~~---~~-------~~~~~~~~~L~~L~l~~~~~ 336 (503)
.+.....+..+++++|.++.....++++ -.+|+..++++-..+. .. ...+-+||+|+.++++.|.+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 3445778888999999888776666553 3566766665532211 11 23345678888888877755
Q ss_pred ChHHH----HHHhCCCCCCEeecCCCCCCHhHHHh-------h------cCCCCCCEEEccCCccChHH----HHHHhcC
Q 010711 337 SDGSL----RKLAGLSSLKSLNLDARQITDTGLAA-------L------TSLTGLTHLDLFGARITDSG----AAYLRNF 395 (503)
Q Consensus 337 ~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~-------~------~~~~~L~~L~l~~~~~~~~~----~~~~~~~ 395 (503)
....+ ..++.-..|+.|.+.+|.+....-.. + +.-|.|+.+....|++...+ ...+..-
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh 184 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH 184 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence 54333 33456677777888777664321111 1 13466777777776655432 2223333
Q ss_pred CCCCeEEecCCCCChhHHHhh-----hcCCCCceeeccCCCCCChhhH----HHHhcCCCCcEEecccCccchhhHhh--
Q 010711 396 KNLRSLEICGGGLTDAGVKHI-----KDLSSLTLLNLSQNCNLTDKTL----ELISGLTGLVSLNVSNSRITSAGLRH-- 464 (503)
Q Consensus 396 ~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~l~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~-- 464 (503)
..|+++.+..|+|...+...+ ..+.+|+.|+|+.| -++.... ..++..+.|++|.+.+|-++..+...
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~ 263 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVL 263 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccchhhhccccchhhccccHHHHH
Confidence 567777777777655443322 23466667777666 3443322 23334555666666666555443321
Q ss_pred --c--cCCcccceEEeccCCCC-----HHHHHHHHhcCCCCcc
Q 010711 465 --L--KPLKNLRSLTLESCKVT-----ANDIKRLQSRDLPNLV 498 (503)
Q Consensus 465 --l--~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~~~L~ 498 (503)
+ ...|+|..|-...|.+. ...+..+....+|-|.
T Consensus 264 ~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~ 306 (388)
T COG5238 264 RRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLV 306 (388)
T ss_pred HHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHH
Confidence 1 23466666666655322 2233444444454443
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.81 E-value=1.8e-09 Score=91.57 Aligned_cols=130 Identities=23% Similarity=0.269 Sum_probs=81.6
Q ss_pred CCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEe
Q 010711 227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306 (503)
Q Consensus 227 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 306 (503)
+..|+.+++++|.++.. .+...-.|+++.|+++.|.+.... .+..+++|+.|++++|.++.. ..+-.++.+++.|.
T Consensus 283 Wq~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchhhh-hhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhh-hhhHhhhcCEeeee
Confidence 44566777777666542 234445567777777777665322 256667777777777755432 22223567777777
Q ss_pred cCCCccChhhHHHhhCCCCCCeeeccCCCCChH-HHHHHhCCCCCCEeecCCCCCCH
Q 010711 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDG-SLRKLAGLSSLKSLNLDARQITD 362 (503)
Q Consensus 307 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~ 362 (503)
++.|.+.+ ...+.++.+|..|++++|++... ....++++|.|+.+.+.+|.+..
T Consensus 359 La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 359 LAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 77776543 34456667777778877777653 23556778888888888877654
No 40
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.73 E-value=5.6e-08 Score=96.66 Aligned_cols=212 Identities=20% Similarity=0.257 Sum_probs=119.9
Q ss_pred CCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHh--CCCCCC
Q 010711 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA--GLSSLK 351 (503)
Q Consensus 274 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~ 351 (503)
..-++..+++.+..........+.+.. |+.+.+++-.......... ..++ +....-..+. .-.+|+
T Consensus 58 ~~f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~------~~id-----i~~lL~~~Ln~~sr~nL~ 125 (699)
T KOG3665|consen 58 RKFNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDD------ATID-----IISLLKDLLNEESRQNLQ 125 (699)
T ss_pred hhheeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhh------hhcc-----HHHHHHHHHhHHHHHhhh
Confidence 334666777776655555555555544 7777776543222110000 0001 1011111111 135677
Q ss_pred EeecCCCC-CCHhHHHhhc-CCCCCCEEEccCCccChHH-HHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeecc
Q 010711 352 SLNLDARQ-ITDTGLAALT-SLTGLTHLDLFGARITDSG-AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428 (503)
Q Consensus 352 ~L~l~~~~-~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 428 (503)
.|++++.. +....+..++ .+|+|+.|.+.+-.+.... .....++|+|..|++++.+++.. ..++.+++|+.|.+.
T Consensus 126 ~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mr 203 (699)
T KOG3665|consen 126 HLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMR 203 (699)
T ss_pred hcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhcc
Confidence 77776632 2222223333 5677777777775554332 33446677777777777777664 456677777777777
Q ss_pred CCCCCCh-hhHHHHhcCCCCcEEecccCccchhh--H----hhccCCcccceEEeccCCCCHHHHHHHHhcCCCCccccc
Q 010711 429 QNCNLTD-KTLELISGLTGLVSLNVSNSRITSAG--L----RHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 501 (503)
Q Consensus 429 ~~~~l~~-~~~~~~~~l~~L~~L~l~~~~~~~~~--~----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~ 501 (503)
+- .+.. .....+-++++|+.||+|..+..... . +.-..+|.|+.|+.+|..+...-++.+. ...|+|+.+.
T Consensus 204 nL-e~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll-~sH~~L~~i~ 281 (699)
T KOG3665|consen 204 NL-EFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELL-NSHPNLQQIA 281 (699)
T ss_pred CC-CCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHH-HhCccHhhhh
Confidence 65 3333 33445667788888888765433221 1 2223578888888888888888887777 5777777664
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.70 E-value=4.7e-09 Score=69.70 Aligned_cols=61 Identities=34% Similarity=0.475 Sum_probs=42.3
Q ss_pred CCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCcc
Q 010711 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457 (503)
Q Consensus 396 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 457 (503)
|+|++|++++|.+.......|..+++|++|++++| .++...+..|.++++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 45667777777666666666667777777777766 66666666777777777777777653
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.55 E-value=1.1e-07 Score=95.02 Aligned_cols=105 Identities=19% Similarity=0.253 Sum_probs=51.3
Q ss_pred CCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecc
Q 010711 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453 (503)
Q Consensus 374 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~ 453 (503)
++.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++| +++...|..+.++++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCEEECc
Confidence 344455555444444444455555555555555554444444555555555555555 4444444455555555555555
Q ss_pred cCccchhhHhhccC-CcccceEEeccC
Q 010711 454 NSRITSAGLRHLKP-LKNLRSLTLESC 479 (503)
Q Consensus 454 ~~~~~~~~~~~l~~-~~~L~~L~l~~~ 479 (503)
+|.++...|..+.. ..++..+++.+|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCC
Confidence 55554444433322 123444444444
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=8.4e-08 Score=81.62 Aligned_cols=66 Identities=17% Similarity=0.205 Sum_probs=46.4
Q ss_pred CCCCCCEeecCCCCCCHhH-HHhhcCCCCCCEEEccCCccChHH-HHHHhcCCCCCeEEecCCCCChh
Q 010711 346 GLSSLKSLNLDARQITDTG-LAALTSLTGLTHLDLFGARITDSG-AAYLRNFKNLRSLEICGGGLTDA 411 (503)
Q Consensus 346 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~ 411 (503)
.+|++..+.+..+.+.... ...+..+|.+..|+++.+++.+.. ..++..++.|..|.++++.+.+.
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 4688888888888766532 244456677777888877776532 45667888888888888877653
No 44
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.49 E-value=2.8e-07 Score=91.80 Aligned_cols=141 Identities=25% Similarity=0.253 Sum_probs=92.7
Q ss_pred CCCCEEecCCCeecChhhHHHhh-CCCCCCEEEcCCCccccHHHHHHHhCCCCCcEEeccCcccccCccccccCCccccE
Q 010711 81 SNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159 (503)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 159 (503)
.+|++|+++|...+....+..++ .+|+|+.|.+.+-....+.......++|+|..||++++ .+... ..+.++++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence 47888888886555555556665 67888888888765545555666678888888888884 33333 56777888888
Q ss_pred eeccCCcCCCccccccccCCCCCCEEEeecccCCchh--H----HhhhcCCCCCEEEcCCCCCcHHHHHH
Q 010711 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG--I----AYLKGLQKLTLLNLEGCPVTAACLDS 223 (503)
Q Consensus 160 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~----~~l~~~~~L~~L~l~~~~~~~~~~~~ 223 (503)
|.+.+-..........+..+++|+.||++........ . ..-..+|+|+.||.+++.+.....+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ 269 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEE 269 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHH
Confidence 8877655444445566677888888888755333221 1 11134677888888877776554443
No 45
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.46 E-value=2e-07 Score=88.95 Aligned_cols=177 Identities=36% Similarity=0.481 Sum_probs=78.7
Q ss_pred CCCCCCEEEccCCCCChhHHHHHhcC-CCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCE
Q 010711 274 GLTNLESLNLDSCGIGDEGLVNLTGL-CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352 (503)
Q Consensus 274 ~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 352 (503)
..+.++.+.+.++.+.+..+ ..... ++|+.|+++++.+.... ..+..++.|+.|++.+|.+.+.... .+..+.|+.
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~ 190 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNN 190 (394)
T ss_pred cccceeEEecCCcccccCcc-ccccchhhcccccccccchhhhh-hhhhccccccccccCCchhhhhhhh-hhhhhhhhh
Confidence 34556666666665543322 22223 25666666666554331 2344555555555555555443221 124455555
Q ss_pred eecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCC
Q 010711 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432 (503)
Q Consensus 353 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 432 (503)
|++++|.+...... ......|+++.+++|..... +..+..+.++..+.+.+|.+... +..+..+++++.|++++| .
T Consensus 191 L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~-~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n-~ 266 (394)
T COG4886 191 LDLSGNKISDLPPE-IELLSALEELDLSNNSIIEL-LSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNN-Q 266 (394)
T ss_pred eeccCCccccCchh-hhhhhhhhhhhhcCCcceec-chhhhhcccccccccCCceeeec-cchhccccccceeccccc-c
Confidence 55555555543221 11223355555555532111 12233444444444444444331 223334444555555554 3
Q ss_pred CChhhHHHHhcCCCCcEEecccCccch
Q 010711 433 LTDKTLELISGLTGLVSLNVSNSRITS 459 (503)
Q Consensus 433 l~~~~~~~~~~l~~L~~L~l~~~~~~~ 459 (503)
++.... +..+.+++.|+++++.+..
T Consensus 267 i~~i~~--~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 267 ISSISS--LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred cccccc--ccccCccCEEeccCccccc
Confidence 443332 3444455555555544443
No 46
>PLN03150 hypothetical protein; Provisional
Probab=98.46 E-value=2.5e-07 Score=92.46 Aligned_cols=106 Identities=22% Similarity=0.333 Sum_probs=75.5
Q ss_pred CCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccC
Q 010711 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 429 (503)
Q Consensus 350 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 429 (503)
++.|+++++.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 66677777777766666677777777777777777766666677777777777777777776677777777777777777
Q ss_pred CCCCChhhHHHHhc-CCCCcEEecccCc
Q 010711 430 NCNLTDKTLELISG-LTGLVSLNVSNSR 456 (503)
Q Consensus 430 ~~~l~~~~~~~~~~-l~~L~~L~l~~~~ 456 (503)
| .++...|..+.. ..++..+++.+|.
T Consensus 500 N-~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 N-SLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred C-cccccCChHHhhccccCceEEecCCc
Confidence 7 666666666554 2456667777664
No 47
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.34 E-value=2.1e-06 Score=84.70 Aligned_cols=62 Identities=34% Similarity=0.478 Sum_probs=30.6
Q ss_pred CCCCCCeeeccCCC-CChHHHHHHhC-CCCCCEeecCCCC-CCHhHHHhhc-CCCCCCEEEccCCc
Q 010711 322 GLTNLESINLSFTG-ISDGSLRKLAG-LSSLKSLNLDARQ-ITDTGLAALT-SLTGLTHLDLFGAR 383 (503)
Q Consensus 322 ~~~~L~~L~l~~~~-~~~~~~~~~~~-~~~L~~L~l~~~~-~~~~~~~~~~-~~~~L~~L~l~~~~ 383 (503)
.+++|+.+++.++. +++.....++. |++|+.|.+.++. +++.+...+. .+++|++|++++|.
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 34555555555554 44444444442 5555555554444 4444443332 45555555555553
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.33 E-value=2.7e-08 Score=94.94 Aligned_cols=216 Identities=35% Similarity=0.374 Sum_probs=93.4
Q ss_pred CCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeec
Q 010711 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331 (503)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 331 (503)
..++.+.+..+.+.. ....+..+.+|..+++.++.+..... .+..+++|++|++++|.+... ..+..++.|+.|++
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccchhhhee
Confidence 344444444443332 11223445556666666655433211 134455555555555554432 22333444555555
Q ss_pred cCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHH-HhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCCh
Q 010711 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410 (503)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 410 (503)
.+|.+... ..+..++.|+.+++++|.+..... . ...+.+++.+.+.+|.+.... .+..+..+..+++..|.++.
T Consensus 148 ~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i~~ 222 (414)
T KOG0531|consen 148 SGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKISK 222 (414)
T ss_pred ccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhccccccee
Confidence 55544432 122234455555555555544322 1 234445555555555443321 11112222222444443332
Q ss_pred hHHHhhhcCCC--CceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCC
Q 010711 411 AGVKHIKDLSS--LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482 (503)
Q Consensus 411 ~~~~~~~~~~~--L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 482 (503)
.. .+..++. |+.+++++| .+.... ..+..+..+..+++.++++... ..+...+.+..+...++++.
T Consensus 223 ~~--~l~~~~~~~L~~l~l~~n-~i~~~~-~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 223 LE--GLNELVMLHLRELYLSGN-RISRSP-EGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred cc--CcccchhHHHHHHhcccC-cccccc-ccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence 11 1111122 555566655 333221 2344455666666666655443 23334455555555555544
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.29 E-value=2e-08 Score=95.62 Aligned_cols=105 Identities=29% Similarity=0.331 Sum_probs=44.4
Q ss_pred CCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEE
Q 010711 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450 (503)
Q Consensus 371 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L 450 (503)
+|.++.|+++.|++++.. .+..+++|++|+|+.|.+.....-....+. |..|.++|| .++... .+.++.+|+-|
T Consensus 186 l~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN-~l~tL~--gie~LksL~~L 259 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN-ALTTLR--GIENLKSLYGL 259 (1096)
T ss_pred HHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeeccc-HHHhhh--hHHhhhhhhcc
Confidence 344444444444444322 344444555555554444332211112222 555555555 333322 33344555555
Q ss_pred ecccCccchhh-HhhccCCcccceEEeccCCC
Q 010711 451 NVSNSRITSAG-LRHLKPLKNLRSLTLESCKV 481 (503)
Q Consensus 451 ~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~ 481 (503)
|+++|-+.+.. ...+..+..|+.|++.||++
T Consensus 260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred chhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 55555433321 12223334455555555553
No 50
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.24 E-value=1.5e-06 Score=83.01 Aligned_cols=179 Identities=23% Similarity=0.257 Sum_probs=104.7
Q ss_pred cCCCCCCEEecCCCeecChhhHHHhhCCC-CCCEEEcCCCccccHHHHHHHhCCCCCcEEeccCcccccCccccccCCcc
Q 010711 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLS-NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 156 (503)
Q Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 156 (503)
...+.++.|++.++ .+... +....... +|++|+++++.. ...|..+..+++|+.|++++| .+...+......+.
T Consensus 113 ~~~~~l~~L~l~~n-~i~~i-~~~~~~~~~nL~~L~l~~N~i--~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~ 187 (394)
T COG4886 113 LELTNLTSLDLDNN-NITDI-PPLIGLLKSNLKELDLSDNKI--ESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSN 187 (394)
T ss_pred hcccceeEEecCCc-ccccC-ccccccchhhcccccccccch--hhhhhhhhccccccccccCCc-hhhhhhhhhhhhhh
Confidence 34466777777664 33332 22233342 677777777653 334455667777777777774 34444444446677
Q ss_pred ccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEcc
Q 010711 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236 (503)
Q Consensus 157 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 236 (503)
|+.|+++++.... .+........|+++.++++... ..+..+..+..+..+.+.++.+... +..+..+++++.|+++
T Consensus 188 L~~L~ls~N~i~~--l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s 263 (394)
T COG4886 188 LNNLDLSGNKISD--LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLS 263 (394)
T ss_pred hhheeccCCcccc--CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cchhccccccceeccc
Confidence 7777777643222 2222234445777777766322 2234456666666666666665432 3445667778888888
Q ss_pred CCCCChhhhHhhhcCCCCCEEEccCCCCChH
Q 010711 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267 (503)
Q Consensus 237 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 267 (503)
++.+..... +....+++.++++++.+...
T Consensus 264 ~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 264 NNQISSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ccccccccc--ccccCccCEEeccCcccccc
Confidence 877765433 66777888888877766543
No 51
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.21 E-value=4.7e-06 Score=82.18 Aligned_cols=82 Identities=32% Similarity=0.432 Sum_probs=40.4
Q ss_pred CCCCCCEEEccCCC-CChhHHHHHhc-CCCCCEEecCCCc-cChhhHHH-hhCCCCCCeeeccCCCC-ChHHHH-HHhCC
Q 010711 274 GLTNLESLNLDSCG-IGDEGLVNLTG-LCNLKCLELSDTQ-VGSSGLRH-LSGLTNLESINLSFTGI-SDGSLR-KLAGL 347 (503)
Q Consensus 274 ~~~~L~~L~l~~~~-~~~~~~~~l~~-~~~L~~L~l~~~~-~~~~~~~~-~~~~~~L~~L~l~~~~~-~~~~~~-~~~~~ 347 (503)
.+++|+.++++++. +++.....+.. +++|+.|.+..+. +.+.+... ...++.|++|++++|.. ++.... ....+
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c 320 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNC 320 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhC
Confidence 44566666666664 45444444443 5566666655554 34433332 23456666666666532 222222 22245
Q ss_pred CCCCEeec
Q 010711 348 SSLKSLNL 355 (503)
Q Consensus 348 ~~L~~L~l 355 (503)
++++.+.+
T Consensus 321 ~~l~~l~~ 328 (482)
T KOG1947|consen 321 PNLRELKL 328 (482)
T ss_pred cchhhhhh
Confidence 55555444
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=4.6e-06 Score=71.32 Aligned_cols=155 Identities=24% Similarity=0.294 Sum_probs=87.2
Q ss_pred CCCeeeccCCCCChH-HHHHHhCCCCCCEeecCCCCCCHhHH---HhhcCCCCCCEEEccCCccChHH--HHHHhcCCCC
Q 010711 325 NLESINLSFTGISDG-SLRKLAGLSSLKSLNLDARQITDTGL---AALTSLTGLTHLDLFGARITDSG--AAYLRNFKNL 398 (503)
Q Consensus 325 ~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L 398 (503)
+|+.+.+.+..+.-. ....+..+|.++.|.++.|....... ..-...+.+.+++...|....-. ...-..+|++
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv 201 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNV 201 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccc
Confidence 455555555444321 12233455666666666653221111 11113346666776666432211 1122447888
Q ss_pred CeEEecCCCCChhH-HHhhhcCCCCceeeccCCCCCChh-hHHHHhcCCCCcEEecccCccchhhHhh------ccCCcc
Q 010711 399 RSLEICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSNSRITSAGLRH------LKPLKN 470 (503)
Q Consensus 399 ~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~------l~~~~~ 470 (503)
..+-++.|.+.+.. -.....+|.+..|+++.+ ++... ..+.+.+++.|..|.++++++.+..-.+ ...+++
T Consensus 202 ~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~ 280 (418)
T KOG2982|consen 202 NSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTK 280 (418)
T ss_pred hheeeecCcccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccc
Confidence 88888888775533 234455677778888888 56654 4567888999999999999887743211 134566
Q ss_pred cceEEeccCCCC
Q 010711 471 LRSLTLESCKVT 482 (503)
Q Consensus 471 L~~L~l~~~~~~ 482 (503)
++.|+ |-+|+
T Consensus 281 v~vLN--GskIs 290 (418)
T KOG2982|consen 281 VQVLN--GSKIS 290 (418)
T ss_pred eEEec--Ccccc
Confidence 66653 33554
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.14 E-value=1.6e-07 Score=89.63 Aligned_cols=243 Identities=28% Similarity=0.333 Sum_probs=162.9
Q ss_pred CCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEE
Q 010711 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305 (503)
Q Consensus 226 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 305 (503)
.+..++.+.+..+.+.. ....+..+.+++.+++..|.+.... ..+..+++|+.|+++++.++.. ..+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchheeccccccccc--cchhhccchhhh
Confidence 44556666666666553 2234667889999999998876432 2267789999999999988754 345567779999
Q ss_pred ecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHH-HHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCcc
Q 010711 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384 (503)
Q Consensus 306 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 384 (503)
++.+|.+... ..+..++.|+.+++++|.+..... . ...+.+++.+.+.+|.+..... +..+..+..+++..|.+
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccc
Confidence 9999987653 344557889999999998876554 2 4678999999999998876322 22233344446666666
Q ss_pred ChHHHHHHhcCC--CCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhh-
Q 010711 385 TDSGAAYLRNFK--NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG- 461 (503)
Q Consensus 385 ~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~- 461 (503)
..... +...+ +|+.+++++|++.... ..+..++.+..|++.++ .+.... .+...+.+..+....+.+....
T Consensus 221 ~~~~~--l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 294 (414)
T KOG0531|consen 221 SKLEG--LNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSN-RISNLE--GLERLPKLSELWLNDNKLALSEA 294 (414)
T ss_pred eeccC--cccchhHHHHHHhcccCcccccc-ccccccccccccchhhc-cccccc--cccccchHHHhccCcchhcchhh
Confidence 54321 12223 3889999999887642 44556788888888887 444422 2344556666666666655221
Q ss_pred --H-hhccCCcccceEEeccCCCCH
Q 010711 462 --L-RHLKPLKNLRSLTLESCKVTA 483 (503)
Q Consensus 462 --~-~~l~~~~~L~~L~l~~~~~~~ 483 (503)
. ......++++.+.+.++++..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 295 ISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred hhccccccccccccccccccCcccc
Confidence 1 124567889999999887654
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.13 E-value=8.7e-08 Score=91.42 Aligned_cols=127 Identities=28% Similarity=0.341 Sum_probs=71.5
Q ss_pred CCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecC
Q 010711 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405 (503)
Q Consensus 326 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 405 (503)
|...++++|.+.. ....+.-++.++.|++++|++++. +.+..++.|++|++++|.+...+.-....|. |+.|.+++
T Consensus 166 L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 4444455554432 223344456677777777777663 3555667777777777766554432233344 77777777
Q ss_pred CCCChhHHHhhhcCCCCceeeccCCCCCChhh-HHHHhcCCCCcEEecccCccch
Q 010711 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITS 459 (503)
Q Consensus 406 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~ 459 (503)
|.++.. ..+.++.+|..||+++| -+.+.. ...+..+..|+.|.|.||++.-
T Consensus 242 N~l~tL--~gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 242 NALTTL--RGIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred cHHHhh--hhHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 766542 34455667777777776 333321 2233445667777777776543
No 55
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.04 E-value=1.6e-07 Score=87.14 Aligned_cols=171 Identities=20% Similarity=0.215 Sum_probs=90.1
Q ss_pred EEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCC
Q 010711 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359 (503)
Q Consensus 280 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 359 (503)
..+++.+++... +..+..+..|+.+.+..|.+... +..+.++..|+.++++.|+++.. +..+..+ -|+.|.+++|+
T Consensus 79 ~aDlsrNR~~el-p~~~~~f~~Le~liLy~n~~r~i-p~~i~~L~~lt~l~ls~NqlS~l-p~~lC~l-pLkvli~sNNk 154 (722)
T KOG0532|consen 79 FADLSRNRFSEL-PEEACAFVSLESLILYHNCIRTI-PEAICNLEALTFLDLSSNQLSHL-PDGLCDL-PLKVLIVSNNK 154 (722)
T ss_pred hhhccccccccC-chHHHHHHHHHHHHHHhccceec-chhhhhhhHHHHhhhccchhhcC-ChhhhcC-cceeEEEecCc
Confidence 345555544432 22233333444455544443322 33445556666666666655432 2223333 36666666666
Q ss_pred CCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHH
Q 010711 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439 (503)
Q Consensus 360 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 439 (503)
++.. +..++..+.|..|+.+.|.+...+ ..+..+.+|+.|.+..|.+.... ..+.. -.|..||++.| ++.. .|.
T Consensus 155 l~~l-p~~ig~~~tl~~ld~s~nei~slp-sql~~l~slr~l~vrRn~l~~lp-~El~~-LpLi~lDfScN-kis~-iPv 228 (722)
T KOG0532|consen 155 LTSL-PEEIGLLPTLAHLDVSKNEIQSLP-SQLGYLTSLRDLNVRRNHLEDLP-EELCS-LPLIRLDFSCN-KISY-LPV 228 (722)
T ss_pred cccC-CcccccchhHHHhhhhhhhhhhch-HHhhhHHHHHHHHHhhhhhhhCC-HHHhC-CceeeeecccC-ceee-cch
Confidence 6653 233445566666666666665543 34455666666666666655542 33332 34556666666 5554 344
Q ss_pred HHhcCCCCcEEecccCccchh
Q 010711 440 LISGLTGLVSLNVSNSRITSA 460 (503)
Q Consensus 440 ~~~~l~~L~~L~l~~~~~~~~ 460 (503)
.|..+..|++|-|.+|++..-
T Consensus 229 ~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 229 DFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred hhhhhhhheeeeeccCCCCCC
Confidence 566666666666666666553
No 56
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.03 E-value=1.6e-07 Score=87.20 Aligned_cols=16 Identities=44% Similarity=0.590 Sum_probs=6.1
Q ss_pred hhcCCCCCEEEccCCC
Q 010711 248 FSKIGSLKVLNLGFNE 263 (503)
Q Consensus 248 l~~~~~L~~L~l~~~~ 263 (503)
|.++..|++|.+.+|+
T Consensus 230 fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNP 245 (722)
T ss_pred hhhhhhheeeeeccCC
Confidence 3333333333333333
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.00 E-value=2.9e-06 Score=68.30 Aligned_cols=106 Identities=19% Similarity=0.225 Sum_probs=78.5
Q ss_pred CCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhh-HHHHhcCCCCcE
Q 010711 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVS 449 (503)
Q Consensus 371 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~l~~L~~ 449 (503)
......+++++|.+... ..|.+++.|..|.+.+|.|+.+.+..-.-+|.|+.|.+.+| ++.... .+.+..||+|+.
T Consensus 41 ~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccce
Confidence 34667788888877654 34677888889999999888876665556688899999888 555532 456677889999
Q ss_pred EecccCccchhhH---hhccCCcccceEEeccC
Q 010711 450 LNVSNSRITSAGL---RHLKPLKNLRSLTLESC 479 (503)
Q Consensus 450 L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~ 479 (503)
|.+-+|++.+..- ..+..+|+|+.|+.++=
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 9999888776543 23467888898888764
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.84 E-value=3e-05 Score=46.79 Aligned_cols=36 Identities=33% Similarity=0.459 Sum_probs=20.3
Q ss_pred CCcEEecccCccchhhHhhccCCcccceEEeccCCCC
Q 010711 446 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482 (503)
Q Consensus 446 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 482 (503)
+|++|++++|+++++++ .+..+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCC
Confidence 55666666666665432 3556666666666666655
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.83 E-value=3.6e-06 Score=63.29 Aligned_cols=113 Identities=19% Similarity=0.237 Sum_probs=82.0
Q ss_pred CCCCEeecCCCCCCHh--HHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCcee
Q 010711 348 SSLKSLNLDARQITDT--GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425 (503)
Q Consensus 348 ~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 425 (503)
..+..++++.|++... .+..+..-..|+..++++|.+.+.++..-..+|.++.+++++|.+.+.. ..+..++.|+.|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvP-eE~Aam~aLr~l 105 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVP-EELAAMPALRSL 105 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhch-HHHhhhHHhhhc
Confidence 4566778888876632 2234445567788899999888877666677788899999999888864 448888999999
Q ss_pred eccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHh
Q 010711 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463 (503)
Q Consensus 426 ~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 463 (503)
++++| .+.. .+..+..+.++-.|+..+|....+..+
T Consensus 106 Nl~~N-~l~~-~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 106 NLRFN-PLNA-EPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred ccccC-cccc-chHHHHHHHhHHHhcCCCCccccCcHH
Confidence 99988 4444 334455578888888888877666554
No 60
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=8.3e-06 Score=65.83 Aligned_cols=83 Identities=33% Similarity=0.490 Sum_probs=52.8
Q ss_pred CCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhc-CCCCcEEecccC-ccchhhHhhccCCcccceEE
Q 010711 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG-LTGLVSLNVSNS-RITSAGLRHLKPLKNLRSLT 475 (503)
Q Consensus 398 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-l~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~ 475 (503)
++.++.+++.|...+.+.+..+++++.|.+.+|.++.+...+.+++ .++|+.|+|++| +|++.+...+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 4455555666666666666666666666666666666655555554 466777777766 56666666666677777776
Q ss_pred eccCC
Q 010711 476 LESCK 480 (503)
Q Consensus 476 l~~~~ 480 (503)
|.+=+
T Consensus 183 l~~l~ 187 (221)
T KOG3864|consen 183 LYDLP 187 (221)
T ss_pred hcCch
Confidence 66643
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.74 E-value=2.9e-05 Score=62.70 Aligned_cols=108 Identities=21% Similarity=0.296 Sum_probs=78.6
Q ss_pred CCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhH-HHhhhcCCCCcee
Q 010711 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLL 425 (503)
Q Consensus 347 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L 425 (503)
..+...+++.+|.+.. .+.|..+++|.+|.+.+|+++...+..-..+|+|..|.+.+|.|...+ ..-+..||.|+.|
T Consensus 41 ~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 3567778888887766 456778888999999999888877666566888999999988876543 2345667888888
Q ss_pred eccCCCCCChhhH---HHHhcCCCCcEEecccCcc
Q 010711 426 NLSQNCNLTDKTL---ELISGLTGLVSLNVSNSRI 457 (503)
Q Consensus 426 ~l~~~~~l~~~~~---~~~~~l~~L~~L~l~~~~~ 457 (503)
.+-+| .++.... .++..+|+|+.||...-..
T Consensus 119 tll~N-pv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 119 TLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred eecCC-chhcccCceeEEEEecCcceEeehhhhhH
Confidence 88888 3443322 2456788999998886543
No 62
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.71 E-value=4.9e-05 Score=45.87 Aligned_cols=37 Identities=41% Similarity=0.520 Sum_probs=19.4
Q ss_pred CCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccch
Q 010711 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459 (503)
Q Consensus 421 ~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~ 459 (503)
+|++|++++| +++...+ .+.++++|+.|++++|++++
T Consensus 2 ~L~~L~l~~N-~i~~l~~-~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPP-ELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSS-S-SSHGG-HGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCC-CCcccCc-hHhCCCCCCEEEecCCCCCC
Confidence 4555555555 5554332 35556666666666665554
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.69 E-value=1.9e-05 Score=61.93 Aligned_cols=105 Identities=21% Similarity=0.319 Sum_probs=44.3
Q ss_pred hcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCC
Q 010711 368 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447 (503)
Q Consensus 368 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L 447 (503)
|..+++|+.+.+.. .+.......|..+++|+.+.+.++ +...+...|..+++++.+.+.+ .+.......|..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccccccc
Confidence 44445555555543 233334444555555666665543 4444444555555566666643 2333333455556666
Q ss_pred cEEecccCccchhhHhhccCCcccceEEecc
Q 010711 448 VSLNVSNSRITSAGLRHLKPLKNLRSLTLES 478 (503)
Q Consensus 448 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 478 (503)
+.+++..+ +..+....+..+ +|+.+.+.+
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 66666543 444444555555 666666654
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=7.3e-06 Score=69.45 Aligned_cols=100 Identities=21% Similarity=0.223 Sum_probs=59.9
Q ss_pred CCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhH-HHhhhcCCCCceee
Q 010711 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLN 426 (503)
Q Consensus 348 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~ 426 (503)
.+.+.|+++++.+++. .....||.|+.|.++-|.++... .+..|.+|++|.|..|.|.+.. ...+.++|+|+.|.
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 4556666677666663 33456777777777777666543 3556777777777777665532 34556667777777
Q ss_pred ccCCCCCChhhH----HHHhcCCCCcEEe
Q 010711 427 LSQNCNLTDKTL----ELISGLTGLVSLN 451 (503)
Q Consensus 427 l~~~~~l~~~~~----~~~~~l~~L~~L~ 451 (503)
|..|+--..... ..+.-+|+|++||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 776643332222 2344566666664
No 65
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.67 E-value=1e-05 Score=60.84 Aligned_cols=111 Identities=20% Similarity=0.205 Sum_probs=65.5
Q ss_pred CCeeeccCCCCCh--HHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEe
Q 010711 326 LESINLSFTGISD--GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403 (503)
Q Consensus 326 L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 403 (503)
+..++++.|.+.. ..+..+.....|+..++++|.+.+.+...-..+|..+.+++.+|.+.+.+.. +..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhccc
Confidence 4445555554432 1233444556666677777777666555445666777777777777666544 667777777777
Q ss_pred cCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHH
Q 010711 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439 (503)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 439 (503)
+.|.+... +..+..+.++..|+..+| ....++.+
T Consensus 108 ~~N~l~~~-p~vi~~L~~l~~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 108 RFNPLNAE-PRVIAPLIKLDMLDSPEN-ARAEIDVD 141 (177)
T ss_pred ccCccccc-hHHHHHHHhHHHhcCCCC-ccccCcHH
Confidence 77766553 333444666666666666 44444433
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.64 E-value=2.1e-05 Score=61.67 Aligned_cols=100 Identities=21% Similarity=0.306 Sum_probs=32.3
Q ss_pred HhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCC
Q 010711 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 445 (503)
Q Consensus 366 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~ 445 (503)
..|..+++|+.+.+.++ +...+...|.++++++.+.+.+ .+...+...|..++.|+.+.+..+ +.......|.++
T Consensus 29 ~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~- 103 (129)
T PF13306_consen 29 NAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC- 103 (129)
T ss_dssp TTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT---BEEHTTTTTT--
T ss_pred hhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc--ccEEchhhhcCC-
Confidence 33444444444444432 3333333444444455555433 222222334444455555554332 333333344444
Q ss_pred CCcEEecccCccchhhHhhccCCccc
Q 010711 446 GLVSLNVSNSRITSAGLRHLKPLKNL 471 (503)
Q Consensus 446 ~L~~L~l~~~~~~~~~~~~l~~~~~L 471 (503)
+|+.+.+.. .+..+....+.++++|
T Consensus 104 ~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 104 NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp T--EEE-TT-B-SS----GGG-----
T ss_pred CceEEEECC-CccEECCccccccccC
Confidence 555555443 3333333444444444
No 67
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=6.3e-05 Score=60.88 Aligned_cols=83 Identities=33% Similarity=0.435 Sum_probs=63.2
Q ss_pred eeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhC-CCCCCEEEcCCCccccHHHHHHHhCCCCCcEEe
Q 010711 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137 (503)
Q Consensus 59 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 137 (503)
+..++-++..++.+....+.+++.++.|.+.+|..+.+...+-++. .++|+.|++++|+.+++.+...+.++++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 5667777777777777777788888888888887777777766664 468888888888878887788888888888887
Q ss_pred ccCc
Q 010711 138 LERC 141 (503)
Q Consensus 138 l~~~ 141 (503)
+.+-
T Consensus 183 l~~l 186 (221)
T KOG3864|consen 183 LYDL 186 (221)
T ss_pred hcCc
Confidence 7763
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=3.1e-05 Score=65.76 Aligned_cols=109 Identities=20% Similarity=0.312 Sum_probs=74.8
Q ss_pred CCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhh-HHHHhcCCCCcE
Q 010711 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVS 449 (503)
Q Consensus 371 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~l~~L~~ 449 (503)
+.+.+.|++.+|.+.+.. ....++.|+.|.|+-|.|+.. ..+..|+.|+.|.|..| .+.+.. ...+.++|+|+.
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhh
Confidence 446677888888887753 346788888888888888764 44667888888888887 566543 356778888888
Q ss_pred EecccCccchhhH-----hhccCCcccceEEeccC-CCCHHHHH
Q 010711 450 LNVSNSRITSAGL-----RHLKPLKNLRSLTLESC-KVTANDIK 487 (503)
Q Consensus 450 L~l~~~~~~~~~~-----~~l~~~~~L~~L~l~~~-~~~~~~~~ 487 (503)
|=|..|+.....+ ..+..+|+|+.| +| +.++..++
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKL---Dnv~VteeEle 133 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKL---DNVPVTEEELE 133 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhc---cCccccHHHHH
Confidence 8888776554333 234557777777 34 56655543
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.30 E-value=0.0001 Score=62.39 Aligned_cols=87 Identities=23% Similarity=0.321 Sum_probs=42.2
Q ss_pred hcCCCCCCEEEccCC--ccChHHHHHHhcCCCCCeEEecCCCCChh-HHHhhhcCCCCceeeccCCCC--CChhhHHHHh
Q 010711 368 LTSLTGLTHLDLFGA--RITDSGAAYLRNFKNLRSLEICGGGLTDA-GVKHIKDLSSLTLLNLSQNCN--LTDKTLELIS 442 (503)
Q Consensus 368 ~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~--l~~~~~~~~~ 442 (503)
+..+|+|+.|.++.| ++..........+|+|+++++++|+|... ....+..+++|..|++.+|.- +...-...|.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 334555555555555 33322222223456666666666665531 122334455666666666631 2222223455
Q ss_pred cCCCCcEEeccc
Q 010711 443 GLTGLVSLNVSN 454 (503)
Q Consensus 443 ~l~~L~~L~l~~ 454 (503)
-+++|+.|+-..
T Consensus 141 ll~~L~~LD~~d 152 (260)
T KOG2739|consen 141 LLPSLKYLDGCD 152 (260)
T ss_pred Hhhhhccccccc
Confidence 566666665443
No 70
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.14 E-value=0.0016 Score=60.26 Aligned_cols=12 Identities=17% Similarity=0.188 Sum_probs=6.3
Q ss_pred CCCCCEEecCCC
Q 010711 80 CSNLQSLDFNFC 91 (503)
Q Consensus 80 ~~~L~~L~l~~~ 91 (503)
++++++|++++|
T Consensus 51 ~~~l~~L~Is~c 62 (426)
T PRK15386 51 ARASGRLYIKDC 62 (426)
T ss_pred hcCCCEEEeCCC
Confidence 455555555554
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.93 E-value=0.00023 Score=60.32 Aligned_cols=106 Identities=23% Similarity=0.281 Sum_probs=70.1
Q ss_pred CCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCC--CCChhHHHhhhcCCCCceeeccCCCCCChh-hHHHHhcCCCC
Q 010711 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG--GLTDAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGL 447 (503)
Q Consensus 371 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~l~~L 447 (503)
...|+.+++.++.++.. ..+..+|+|+.|.++.| .+..........+|+|+++++++| ++... ....+..+++|
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENL 118 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcch
Confidence 34556666666655543 34556889999999998 444333334455699999999999 66642 23456678889
Q ss_pred cEEecccCccchhh---HhhccCCcccceEEeccC
Q 010711 448 VSLNVSNSRITSAG---LRHLKPLKNLRSLTLESC 479 (503)
Q Consensus 448 ~~L~l~~~~~~~~~---~~~l~~~~~L~~L~l~~~ 479 (503)
+.|++.+|..+... ...+.-+|+|.+|+-.+.
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 99999988655422 244566788888765443
No 72
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.60 E-value=0.0059 Score=56.62 Aligned_cols=139 Identities=18% Similarity=0.189 Sum_probs=74.5
Q ss_pred HHhhCCCCCCeeeccCCCCChHHHHHHhCC-CCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCC-ccChHHHHHHhcC
Q 010711 318 RHLSGLTNLESINLSFTGISDGSLRKLAGL-SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNF 395 (503)
Q Consensus 318 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~ 395 (503)
.-+..+.+++.|++++|.+.... .+ ++|++|.+.++.--...+..+ .++|+.|.+++| .+... .
T Consensus 46 ~r~~~~~~l~~L~Is~c~L~sLP-----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-------P 111 (426)
T PRK15386 46 PQIEEARASGRLYIKDCDIESLP-----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-------P 111 (426)
T ss_pred HHHHHhcCCCEEEeCCCCCcccC-----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-------c
Confidence 34556789999999999776532 23 469999998853322223333 358999999998 44321 3
Q ss_pred CCCCeEEecCCCCChhHHHhhhcC-CCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceE
Q 010711 396 KNLRSLEICGGGLTDAGVKHIKDL-SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474 (503)
Q Consensus 396 ~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 474 (503)
++|+.|++.++..... ..+ ++|+.|.+.++.......... .-.++|+.|++++|..... |..++ .+|+.|
T Consensus 112 ~sLe~L~L~~n~~~~L-----~~LPssLk~L~I~~~n~~~~~~lp~-~LPsSLk~L~Is~c~~i~L-P~~LP--~SLk~L 182 (426)
T PRK15386 112 ESVRSLEIKGSATDSI-----KNVPNGLTSLSINSYNPENQARIDN-LISPSLKTLSLTGCSNIIL-PEKLP--ESLQSI 182 (426)
T ss_pred cccceEEeCCCCCccc-----ccCcchHhheecccccccccccccc-ccCCcccEEEecCCCcccC-ccccc--ccCcEE
Confidence 5688888876554321 111 345555554321111100000 0114566666666654332 22222 355555
Q ss_pred EeccC
Q 010711 475 TLESC 479 (503)
Q Consensus 475 ~l~~~ 479 (503)
+++.+
T Consensus 183 ~ls~n 187 (426)
T PRK15386 183 TLHIE 187 (426)
T ss_pred Eeccc
Confidence 55443
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.36 E-value=0.00066 Score=65.16 Aligned_cols=201 Identities=30% Similarity=0.413 Sum_probs=107.6
Q ss_pred CCEEEccCCCCChhH----HHHHhcCCCCCEEecCCCccChhhHHHhh----CC-CCCCeeeccCCCCChHHH----HHH
Q 010711 278 LESLNLDSCGIGDEG----LVNLTGLCNLKCLELSDTQVGSSGLRHLS----GL-TNLESINLSFTGISDGSL----RKL 344 (503)
Q Consensus 278 L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~----~~-~~L~~L~l~~~~~~~~~~----~~~ 344 (503)
+..+.+.+|.+.+.. ...+...+.|+.|++++|.+.+.....+. .. ..++.|.+..|.++.... ..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 566777777665433 33445567888888888887765444332 22 345667776676654332 334
Q ss_pred hCCCCCCEeecCCCCCCHhHH----Hhhc----CCCCCCEEEccCCccChHHHH----HHhcCCC-CCeEEecCCCCChh
Q 010711 345 AGLSSLKSLNLDARQITDTGL----AALT----SLTGLTHLDLFGARITDSGAA----YLRNFKN-LRSLEICGGGLTDA 411 (503)
Q Consensus 345 ~~~~~L~~L~l~~~~~~~~~~----~~~~----~~~~L~~L~l~~~~~~~~~~~----~~~~~~~-L~~L~l~~~~~~~~ 411 (503)
.....++.+++..|.+...+. ..+. ...++++|.+++|.++..... .+...++ +.+++++.|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 456677777777776643322 2222 245666777777766643322 2233444 55566666666655
Q ss_pred HHHhh----hcC-CCCceeeccCCCCCChhhH----HHHhcCCCCcEEecccCccchhhH----hhccCCcccceEEecc
Q 010711 412 GVKHI----KDL-SSLTLLNLSQNCNLTDKTL----ELISGLTGLVSLNVSNSRITSAGL----RHLKPLKNLRSLTLES 478 (503)
Q Consensus 412 ~~~~~----~~~-~~L~~L~l~~~~~l~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~ 478 (503)
+...+ ..+ +.++.++++.| .++.... +.+..++.++++.++.|++.+... ..+.....+..+.+.+
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~ 327 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGG 327 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccc
Confidence 33322 222 44566666666 4444322 233345566666666666555433 2223334444444443
Q ss_pred C
Q 010711 479 C 479 (503)
Q Consensus 479 ~ 479 (503)
+
T Consensus 328 ~ 328 (478)
T KOG4308|consen 328 T 328 (478)
T ss_pred c
Confidence 3
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.18 E-value=0.00066 Score=65.16 Aligned_cols=187 Identities=28% Similarity=0.369 Sum_probs=128.0
Q ss_pred CCEEecCCCccChhhH----HHhhCCCCCCeeeccCCCCChHHHHHHhC----C-CCCCEeecCCCCCCHhHH----Hhh
Q 010711 302 LKCLELSDTQVGSSGL----RHLSGLTNLESINLSFTGISDGSLRKLAG----L-SSLKSLNLDARQITDTGL----AAL 368 (503)
Q Consensus 302 L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~-~~L~~L~l~~~~~~~~~~----~~~ 368 (503)
+..+.+.+|.+.+... ..+...+.|..|++++|.+.+.....+.. . ..+++|.+..|.++..+. ..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6677777777665433 34567789999999999888766555442 1 456778888887776543 445
Q ss_pred cCCCCCCEEEccCCccChHH----HHHHh----cCCCCCeEEecCCCCChhHHH----hhhcCCC-CceeeccCCCCCCh
Q 010711 369 TSLTGLTHLDLFGARITDSG----AAYLR----NFKNLRSLEICGGGLTDAGVK----HIKDLSS-LTLLNLSQNCNLTD 435 (503)
Q Consensus 369 ~~~~~L~~L~l~~~~~~~~~----~~~~~----~~~~L~~L~l~~~~~~~~~~~----~~~~~~~-L~~L~l~~~~~l~~ 435 (503)
...+.++.++++.|.+...+ +..+. ...++++|++.++.++...-. .+...+. +..+++.+| .+.+
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n-~l~d 247 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASN-KLGD 247 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhc-Ccch
Confidence 56788888999888775433 22333 356788899998887754432 2333455 667888888 5665
Q ss_pred hhH----HHHhcC-CCCcEEecccCccchhhH----hhccCCcccceEEeccCCCCHHHHHHH
Q 010711 436 KTL----ELISGL-TGLVSLNVSNSRITSAGL----RHLKPLKNLRSLTLESCKVTANDIKRL 489 (503)
Q Consensus 436 ~~~----~~~~~l-~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~~ 489 (503)
... ..+..+ +.++.++++.|.+.+... +.+..+++++.+.++.|+++..+.+.+
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~ 310 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELL 310 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHH
Confidence 422 334445 678999999999887655 445677899999999998887765543
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.62 E-value=0.024 Score=28.84 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=12.8
Q ss_pred CcccceEEeccCCCCHHHHHHH
Q 010711 468 LKNLRSLTLESCKVTANDIKRL 489 (503)
Q Consensus 468 ~~~L~~L~l~~~~~~~~~~~~~ 489 (503)
+++|+.|+|++|+|+..+.+.+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3566777777777776666654
No 76
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=94.01 E-value=0.064 Score=27.91 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=18.3
Q ss_pred CcccceEEeccC-CCCHHHHHHHH
Q 010711 468 LKNLRSLTLESC-KVTANDIKRLQ 490 (503)
Q Consensus 468 ~~~L~~L~l~~~-~~~~~~~~~~~ 490 (503)
+++|++|++++| .+++.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 578888888888 68888887764
No 77
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=93.84 E-value=0.065 Score=27.90 Aligned_cols=23 Identities=48% Similarity=0.931 Sum_probs=11.9
Q ss_pred CCCCCEEecCCCeecChhhHHHh
Q 010711 80 CSNLQSLDFNFCIQISDGGLEHL 102 (503)
Q Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~ 102 (503)
|++|++|++++|..+++.+...+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHH
Confidence 34555555555555555444443
No 78
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.36 E-value=0.033 Score=27.62 Aligned_cols=15 Identities=33% Similarity=0.425 Sum_probs=9.1
Q ss_pred CCcEEecccCccchh
Q 010711 446 GLVSLNVSNSRITSA 460 (503)
Q Consensus 446 ~L~~L~l~~~~~~~~ 460 (503)
+|+.|+|++|+++.+
T Consensus 1 ~L~~Ldls~n~l~~i 15 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSI 15 (22)
T ss_dssp TESEEEETSSEESEE
T ss_pred CccEEECCCCcCEeC
Confidence 356666666666643
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.10 E-value=0.053 Score=24.89 Aligned_cols=12 Identities=42% Similarity=0.731 Sum_probs=4.0
Q ss_pred CCcEEecccCcc
Q 010711 446 GLVSLNVSNSRI 457 (503)
Q Consensus 446 ~L~~L~l~~~~~ 457 (503)
+|+.|+|++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 344444444443
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.57 E-value=0.081 Score=26.86 Aligned_cols=17 Identities=35% Similarity=0.702 Sum_probs=6.6
Q ss_pred CCCeEEecCCCCChhHH
Q 010711 397 NLRSLEICGGGLTDAGV 413 (503)
Q Consensus 397 ~L~~L~l~~~~~~~~~~ 413 (503)
+|++|++++|.+++.+.
T Consensus 3 ~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 3 NLETLDLSNNQITDEGA 19 (24)
T ss_dssp T-SEEE-TSSBEHHHHH
T ss_pred CCCEEEccCCcCCHHHH
Confidence 44444444444444333
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=90.68 E-value=0.36 Score=25.63 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=16.9
Q ss_pred cccceEEeccCCCCHHHHHHHH
Q 010711 469 KNLRSLTLESCKVTANDIKRLQ 490 (503)
Q Consensus 469 ~~L~~L~l~~~~~~~~~~~~~~ 490 (503)
++|++|+|++|.++..|...+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 5678888888888888777665
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.62 E-value=0.36 Score=25.00 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=11.3
Q ss_pred CCCcEEecccCccchhhHhh
Q 010711 445 TGLVSLNVSNSRITSAGLRH 464 (503)
Q Consensus 445 ~~L~~L~l~~~~~~~~~~~~ 464 (503)
++|+.|++++|.+..+++..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45666666666666554443
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.62 E-value=0.36 Score=25.00 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=11.3
Q ss_pred CCCcEEecccCccchhhHhh
Q 010711 445 TGLVSLNVSNSRITSAGLRH 464 (503)
Q Consensus 445 ~~L~~L~l~~~~~~~~~~~~ 464 (503)
++|+.|++++|.+..+++..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45666666666666554443
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=80.00 E-value=2.3 Score=40.98 Aligned_cols=66 Identities=18% Similarity=0.187 Sum_probs=34.1
Q ss_pred hcCCCCCeEEecCCCCChhH-H-HhhhcCCCCceeeccCCCCCChhhHHHHh--cCCCCcEEecccCccch
Q 010711 393 RNFKNLRSLEICGGGLTDAG-V-KHIKDLSSLTLLNLSQNCNLTDKTLELIS--GLTGLVSLNVSNSRITS 459 (503)
Q Consensus 393 ~~~~~L~~L~l~~~~~~~~~-~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~l~~L~~L~l~~~~~~~ 459 (503)
.+.|.+..+.+++|.+.... . ..-...|.|+.|+|++|..... ....+. +...|++|-+.||++..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-SESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-chhhhhhhcCCCHHHeeecCCcccc
Confidence 35667777778877664321 1 1112347777777777621111 111222 23346666666666543
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=68.16 E-value=3.7 Score=21.31 Aligned_cols=15 Identities=33% Similarity=0.532 Sum_probs=7.6
Q ss_pred CCCcEEecccCccch
Q 010711 445 TGLVSLNVSNSRITS 459 (503)
Q Consensus 445 ~~L~~L~l~~~~~~~ 459 (503)
.+|+.|+++.|++..
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 345555555555433
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=48.67 E-value=9.3 Score=19.84 Aligned_cols=15 Identities=53% Similarity=0.640 Sum_probs=8.6
Q ss_pred CCcEEecccCccchh
Q 010711 446 GLVSLNVSNSRITSA 460 (503)
Q Consensus 446 ~L~~L~l~~~~~~~~ 460 (503)
+|+.|++++|+++..
T Consensus 3 ~L~~L~vs~N~Lt~L 17 (26)
T smart00364 3 SLKELNVSNNQLTSL 17 (26)
T ss_pred ccceeecCCCccccC
Confidence 456666666665543
No 87
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=47.55 E-value=0.61 Score=39.44 Aligned_cols=85 Identities=15% Similarity=0.089 Sum_probs=37.5
Q ss_pred CCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcE
Q 010711 370 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 449 (503)
Q Consensus 370 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~ 449 (503)
.....+.|+++.+++..... .++-+..+..|+++.|.+.- .+..+.....+..+++.+| +.+. .|..+...+.++.
T Consensus 40 ~~kr~tvld~~s~r~vn~~~-n~s~~t~~~rl~~sknq~~~-~~~d~~q~~e~~~~~~~~n-~~~~-~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGK-NFSILTRLVRLDLSKNQIKF-LPKDAKQQRETVNAASHKN-NHSQ-QPKSQKKEPHPKK 115 (326)
T ss_pred ccceeeeehhhhhHHHhhcc-chHHHHHHHHHhccHhhHhh-ChhhHHHHHHHHHHHhhcc-chhh-CCccccccCCcch
Confidence 44455555555554443321 22334445555555554432 1233333334444444443 2222 3334445555555
Q ss_pred EecccCccc
Q 010711 450 LNVSNSRIT 458 (503)
Q Consensus 450 L~l~~~~~~ 458 (503)
++.-++++.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 555555433
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=43.55 E-value=25 Score=34.38 Aligned_cols=65 Identities=22% Similarity=0.228 Sum_probs=39.5
Q ss_pred CCCCCCEeecCCCCCCHhH-HHhh-cCCCCCCEEEccCC--ccChHHHHHHhcCCCCCeEEecCCCCCh
Q 010711 346 GLSSLKSLNLDARQITDTG-LAAL-TSLTGLTHLDLFGA--RITDSGAAYLRNFKNLRSLEICGGGLTD 410 (503)
Q Consensus 346 ~~~~L~~L~l~~~~~~~~~-~~~~-~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 410 (503)
+.|.+..+.+++|.+.... ...+ ...|+|..|+|++| .+.......=-....|++|-+.||.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 6788888888888776532 1222 25688888888888 3332211111123457778888877643
No 89
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=40.03 E-value=1.6 Score=37.04 Aligned_cols=81 Identities=11% Similarity=-0.013 Sum_probs=34.7
Q ss_pred ccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcEEeccCcccccCccccccCCcc
Q 010711 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 156 (503)
Q Consensus 77 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 156 (503)
+..+...++||++.+. .. ..-..|+.++.|..|+++.+.. ...|+.+.....++.++... ...+..|.+++..+.
T Consensus 38 i~~~kr~tvld~~s~r-~v-n~~~n~s~~t~~~rl~~sknq~--~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~ 112 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNR-LV-NLGKNFSILTRLVRLDLSKNQI--KFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPH 112 (326)
T ss_pred hhccceeeeehhhhhH-HH-hhccchHHHHHHHHHhccHhhH--hhChhhHHHHHHHHHHHhhc-cchhhCCccccccCC
Confidence 4455566666666542 11 1122333344555555554432 33344444444444444443 223333333333344
Q ss_pred ccEeec
Q 010711 157 LESLNI 162 (503)
Q Consensus 157 L~~L~l 162 (503)
++.++.
T Consensus 113 ~k~~e~ 118 (326)
T KOG0473|consen 113 PKKNEQ 118 (326)
T ss_pred cchhhh
Confidence 433333
No 90
>PF14162 YozD: YozD-like protein
Probab=32.36 E-value=53 Score=20.18 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhccccCc
Q 010711 4 RDISQQIFNELVYSRCLTE 22 (503)
Q Consensus 4 ~~~~~~~~~~l~~~~~~~~ 22 (503)
+|+++=++.+|++|.++..
T Consensus 11 EEIAefFy~eL~kRGyvP~ 29 (57)
T PF14162_consen 11 EEIAEFFYHELVKRGYVPT 29 (57)
T ss_pred HHHHHHHHHHHHHccCCCc
Confidence 7899999999999998854
No 91
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=27.77 E-value=82 Score=28.81 Aligned_cols=70 Identities=29% Similarity=0.294 Sum_probs=36.6
Q ss_pred CCCceeeccCCCCCChhhHH----HHhcCCCCcEEecccCccchhh----HhhccCCcccceEEeccCCCCHHHHHHH
Q 010711 420 SSLTLLNLSQNCNLTDKTLE----LISGLTGLVSLNVSNSRITSAG----LRHLKPLKNLRSLTLESCKVTANDIKRL 489 (503)
Q Consensus 420 ~~L~~L~l~~~~~l~~~~~~----~~~~l~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 489 (503)
+.++..+|++...+...... .+..-+..+...+.+.+.++.. ...+..++.|+.|++++|-||..++..+
T Consensus 198 ~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~ 275 (353)
T KOG3735|consen 198 TGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMAL 275 (353)
T ss_pred CCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHH
Confidence 55555555555444443322 2233344455555444444322 2334556677777777777777666444
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=24.64 E-value=1.4e+02 Score=28.89 Aligned_cols=197 Identities=16% Similarity=0.060 Sum_probs=81.2
Q ss_pred CCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHh---CCCCCCEeecCCCCCCHhHHHhhc---CCCC
Q 010711 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA---GLSSLKSLNLDARQITDTGLAALT---SLTG 373 (503)
Q Consensus 300 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~---~~~~ 373 (503)
+.+++++++.+.+.+.....+.... --+.++.|..++.....+. .-..+.+++++.+...+..+.... .-..
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~--~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~v 242 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPG--NPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLV 242 (553)
T ss_pred chhhhhccCCCcccccCCccccCCC--CccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhh
Confidence 4456666666665554444333211 1144555555443332222 123456666666655544332221 1223
Q ss_pred CCEEEccCCccChHH---HHHHhcCCCCCeEEecCCCCCh--------hHHHhhhcCCCCceeeccCCCCCChhh-HHHH
Q 010711 374 LTHLDLFGARITDSG---AAYLRNFKNLRSLEICGGGLTD--------AGVKHIKDLSSLTLLNLSQNCNLTDKT-LELI 441 (503)
Q Consensus 374 L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~--------~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~ 441 (503)
++.++.+...+.-.. +-....-.+++..+++.|.... ..-..+..-+++ .|++.++ .....- ...+
T Consensus 243 l~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~-~~psE~lks~L 320 (553)
T KOG4242|consen 243 LFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPR-YTPSEKLKSML 320 (553)
T ss_pred hhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccc-cCchhhhhhhh
Confidence 444444443222111 1112233456666665543221 111122223555 6666666 333222 2222
Q ss_pred hcC-----CCCcEEecccCccchhhH-hhccCCcccceEEeccCCCCHHHHHHHHhcCCCCcccc
Q 010711 442 SGL-----TGLVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 500 (503)
Q Consensus 442 ~~l-----~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l 500 (503)
.++ ..=-+++++.|+....-. ++-..-.+++.|.+.+|.....+-.......-++++++
T Consensus 321 Lgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l 385 (553)
T KOG4242|consen 321 LGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAVGKRKQSKSGRIL 385 (553)
T ss_pred cccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccccceeeccccccc
Confidence 211 112345555555433211 12122234677777766554433322222233444443
Done!