Query 010711
Match_columns 503
No_of_seqs 303 out of 3008
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 12:39:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010711.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010711hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t6q_A CD180 antigen; protein- 100.0 7.8E-45 2.7E-49 365.6 15.8 437 57-501 33-553 (606)
2 3rgz_A Protein brassinosteroid 100.0 1.2E-45 4.2E-50 379.1 8.9 443 32-482 152-717 (768)
3 3rgz_A Protein brassinosteroid 100.0 8.1E-45 2.8E-49 373.0 8.6 436 55-501 98-544 (768)
4 3t6q_A CD180 antigen; protein- 100.0 1.6E-43 5.6E-48 355.9 13.9 422 55-482 55-560 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 2.7E-42 9.1E-47 351.7 14.5 181 320-502 426-616 (680)
6 3vq2_A TLR4, TOLL-like recepto 100.0 4.8E-42 1.6E-46 345.3 12.8 433 56-502 31-552 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 1E-41 3.4E-46 347.5 14.9 442 55-502 47-591 (680)
8 3vq2_A TLR4, TOLL-like recepto 100.0 9.6E-42 3.3E-46 343.1 8.3 416 55-483 54-559 (606)
9 2z81_A CD282 antigen, TOLL-lik 100.0 1.9E-39 6.6E-44 322.5 24.2 415 56-483 25-511 (549)
10 2z63_A TOLL-like receptor 4, v 100.0 3.5E-42 1.2E-46 344.1 4.5 419 56-482 27-531 (570)
11 3j0a_A TOLL-like receptor 5; m 100.0 2.8E-41 9.6E-46 350.3 5.1 419 55-482 22-539 (844)
12 2z63_A TOLL-like receptor 4, v 100.0 1.5E-40 5E-45 332.4 3.5 415 32-460 29-533 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 3.3E-38 1.1E-42 313.6 16.0 429 59-502 7-504 (549)
14 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-37 4E-42 307.3 17.9 410 57-483 21-482 (520)
15 4eco_A Uncharacterized protein 100.0 3.9E-39 1.3E-43 323.4 6.5 417 57-485 81-603 (636)
16 3j0a_A TOLL-like receptor 5; m 100.0 2.8E-39 9.5E-44 335.4 3.1 420 55-482 71-560 (844)
17 4ecn_A Leucine-rich repeat pro 100.0 2.4E-38 8.1E-43 322.3 4.7 414 57-485 323-843 (876)
18 4eco_A Uncharacterized protein 100.0 6.1E-37 2.1E-41 307.4 5.5 408 81-502 81-594 (636)
19 4ecn_A Leucine-rich repeat pro 100.0 2.5E-36 8.5E-41 307.5 9.5 406 81-502 323-834 (876)
20 3v47_A TOLL-like receptor 5B a 100.0 1.2E-35 4.3E-40 288.0 13.0 361 106-483 30-409 (455)
21 1z7x_W Ribonuclease inhibitor; 100.0 1E-33 3.5E-38 275.1 25.9 395 81-500 3-460 (461)
22 2z7x_B TOLL-like receptor 1, v 100.0 5.4E-35 1.9E-39 288.3 16.2 422 60-502 3-475 (520)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.5E-35 1.9E-39 290.4 16.3 413 56-483 51-511 (562)
24 1z7x_W Ribonuclease inhibitor; 100.0 4.5E-32 1.5E-36 263.6 33.5 381 56-460 2-442 (461)
25 3v47_A TOLL-like receptor 5B a 100.0 9.3E-35 3.2E-39 281.9 11.5 382 61-461 14-411 (455)
26 2p1m_B Transport inhibitor res 100.0 1.9E-31 6.5E-36 267.8 33.1 388 104-498 103-534 (594)
27 4g8a_A TOLL-like receptor 4; l 100.0 4E-34 1.4E-38 289.9 12.6 423 56-482 51-580 (635)
28 3ogk_B Coronatine-insensitive 100.0 9.4E-32 3.2E-36 269.8 27.2 388 104-498 110-541 (592)
29 1o6v_A Internalin A; bacterial 100.0 2E-32 6.9E-37 265.4 21.6 348 78-460 43-390 (466)
30 1o6v_A Internalin A; bacterial 100.0 1.2E-31 4.2E-36 259.9 25.7 345 56-435 45-389 (466)
31 2p1m_B Transport inhibitor res 100.0 2.5E-30 8.6E-35 259.6 35.2 471 2-480 9-542 (594)
32 4fmz_A Internalin; leucine ric 100.0 3E-31 1E-35 247.6 23.8 306 153-483 42-347 (347)
33 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.8E-32 6E-37 272.4 13.2 428 56-502 30-504 (562)
34 2id5_A Lingo-1, leucine rich r 100.0 8E-33 2.7E-37 269.6 8.6 319 135-458 15-333 (477)
35 4fmz_A Internalin; leucine ric 100.0 5E-30 1.7E-34 239.3 25.2 305 104-458 42-346 (347)
36 2id5_A Lingo-1, leucine rich r 100.0 6.3E-32 2.2E-36 263.3 11.6 318 109-431 14-331 (477)
37 3ogk_B Coronatine-insensitive 100.0 3.1E-30 1.1E-34 258.8 23.7 440 44-502 40-520 (592)
38 4g8a_A TOLL-like receptor 4; l 100.0 7.8E-32 2.7E-36 273.2 8.7 431 61-502 35-574 (635)
39 3o6n_A APL1; leucine-rich repe 100.0 2.1E-30 7.2E-35 245.6 13.6 316 130-490 44-360 (390)
40 3o6n_A APL1; leucine-rich repe 100.0 5.1E-29 1.7E-33 236.1 15.6 314 104-462 43-356 (390)
41 3oja_B Anopheles plasmodium-re 100.0 1.2E-29 4E-34 253.3 11.3 309 130-458 50-358 (597)
42 3bz5_A Internalin-J, INLJ; leu 100.0 2.8E-29 9.7E-34 241.0 11.9 344 56-463 41-392 (457)
43 3bz5_A Internalin-J, INLJ; leu 100.0 1.4E-28 4.9E-33 236.1 14.2 355 32-454 43-408 (457)
44 1jl5_A Outer protein YOPM; leu 100.0 5.9E-29 2E-33 238.6 10.0 372 56-483 10-410 (454)
45 3oja_B Anopheles plasmodium-re 100.0 2.5E-28 8.4E-33 243.8 14.7 312 105-437 50-361 (597)
46 1xku_A Decorin; proteoglycan, 99.9 1.1E-27 3.8E-32 221.4 9.9 289 156-480 32-330 (330)
47 1jl5_A Outer protein YOPM; leu 99.9 1E-27 3.4E-32 230.0 6.0 348 79-483 9-371 (454)
48 2ft3_A Biglycan; proteoglycan, 99.9 9.2E-28 3.2E-32 222.1 4.6 290 156-480 34-331 (332)
49 1xku_A Decorin; proteoglycan, 99.9 1.1E-26 3.8E-31 214.7 11.8 289 132-456 32-330 (330)
50 2ft3_A Biglycan; proteoglycan, 99.9 7.6E-27 2.6E-31 215.9 7.0 288 132-456 34-331 (332)
51 1ogq_A PGIP-2, polygalacturona 99.9 6.2E-28 2.1E-32 220.6 -1.3 248 205-480 51-302 (313)
52 2z80_A TOLL-like receptor 2, v 99.9 4.6E-26 1.6E-30 212.6 9.4 254 229-483 53-315 (353)
53 1ogq_A PGIP-2, polygalacturona 99.9 5.9E-27 2E-31 214.1 -1.3 248 180-430 50-301 (313)
54 2z80_A TOLL-like receptor 2, v 99.9 3.1E-25 1E-29 207.0 7.0 258 180-459 52-315 (353)
55 3zyj_A Leucine-rich repeat-con 99.9 1.4E-24 4.9E-29 208.6 7.2 246 206-457 45-291 (440)
56 3zyi_A Leucine-rich repeat-con 99.9 1.7E-24 5.9E-29 208.8 6.9 226 228-456 75-301 (452)
57 2ca6_A RAN GTPase-activating p 99.9 1.6E-22 5.6E-27 191.0 20.0 257 222-479 26-340 (386)
58 2z66_A Variable lymphocyte rec 99.9 6.7E-25 2.3E-29 200.5 3.2 230 228-482 28-261 (306)
59 1ozn_A Reticulon 4 receptor; N 99.9 3.3E-24 1.1E-28 193.7 6.7 224 231-458 14-238 (285)
60 1ozn_A Reticulon 4 receptor; N 99.9 1.2E-24 4E-29 196.7 3.1 268 207-479 14-284 (285)
61 3o53_A Protein LRIM1, AGAP0063 99.9 7.7E-25 2.6E-29 200.7 1.6 254 186-454 16-271 (317)
62 3zyi_A Leucine-rich repeat-con 99.9 4.8E-24 1.6E-28 205.7 6.9 226 204-431 75-301 (452)
63 3zyj_A Leucine-rich repeat-con 99.9 5.3E-24 1.8E-28 204.7 6.4 226 204-431 64-290 (440)
64 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-24 3.9E-29 199.6 1.4 260 205-479 11-272 (317)
65 2ast_B S-phase kinase-associat 99.9 8.2E-22 2.8E-26 182.8 20.0 222 205-430 48-282 (336)
66 2ca6_A RAN GTPase-activating p 99.9 1.4E-21 4.9E-26 184.5 21.5 256 198-454 26-339 (386)
67 2ast_B S-phase kinase-associat 99.9 1.7E-21 5.7E-26 180.7 20.3 251 228-485 47-309 (336)
68 3goz_A Leucine-rich repeat-con 99.9 2.3E-22 8E-27 187.8 14.6 251 209-460 3-299 (362)
69 2z66_A Variable lymphocyte rec 99.9 6.6E-23 2.3E-27 187.3 9.7 246 61-312 11-260 (306)
70 1wwl_A Monocyte differentiatio 99.9 1.1E-24 3.8E-29 199.2 -4.6 254 201-484 40-311 (312)
71 4fcg_A Uncharacterized protein 99.9 9E-24 3.1E-28 194.1 1.2 236 226-482 79-314 (328)
72 4fcg_A Uncharacterized protein 99.9 1.3E-22 4.5E-27 186.4 8.6 222 55-284 79-309 (328)
73 3goz_A Leucine-rich repeat-con 99.9 4.2E-21 1.4E-25 179.4 16.7 252 232-484 2-299 (362)
74 3oja_A Leucine-rich immune mol 99.9 5.8E-23 2E-27 199.0 2.9 235 228-477 34-270 (487)
75 3oja_A Leucine-rich immune mol 99.9 6.1E-23 2.1E-27 198.9 1.8 237 202-453 32-270 (487)
76 3g06_A SSPH2 (leucine-rich rep 99.9 4.4E-21 1.5E-25 189.4 14.7 266 155-466 40-305 (622)
77 1wwl_A Monocyte differentiatio 99.9 1.1E-23 3.9E-28 192.5 -3.6 254 174-459 37-310 (312)
78 2z62_A TOLL-like receptor 4, v 99.8 3.5E-22 1.2E-26 179.6 4.4 205 252-482 28-237 (276)
79 3g06_A SSPH2 (leucine-rich rep 99.8 1.1E-20 3.6E-25 186.7 14.4 268 131-444 40-307 (622)
80 2o6q_A Variable lymphocyte rec 99.8 8.3E-22 2.8E-26 176.2 5.2 201 253-481 17-217 (270)
81 2z62_A TOLL-like receptor 4, v 99.8 1.8E-21 6.3E-26 174.8 3.5 206 228-458 28-237 (276)
82 2o6q_A Variable lymphocyte rec 99.8 4.2E-21 1.5E-25 171.6 4.7 200 228-430 16-215 (270)
83 1h6u_A Internalin H; cell adhe 99.8 6.6E-20 2.3E-24 166.8 11.9 195 249-460 38-232 (308)
84 3rfs_A Internalin B, repeat mo 99.8 1.6E-20 5.3E-25 168.0 7.4 197 274-482 39-235 (272)
85 4glp_A Monocyte differentiatio 99.8 1E-20 3.5E-25 172.8 4.6 231 228-484 64-309 (310)
86 3rfs_A Internalin B, repeat mo 99.8 1E-20 3.6E-25 169.1 4.5 211 248-470 37-247 (272)
87 1p9a_G Platelet glycoprotein I 99.8 2.3E-20 8E-25 168.0 4.7 201 248-456 6-206 (290)
88 1h6u_A Internalin H; cell adhe 99.8 3.7E-19 1.3E-23 161.9 12.1 193 226-435 39-231 (308)
89 2xwt_C Thyrotropin receptor; s 99.8 9E-21 3.1E-25 166.3 -0.2 198 277-480 32-237 (239)
90 4glp_A Monocyte differentiatio 99.8 1.8E-19 6.1E-24 164.5 6.9 230 203-459 63-308 (310)
91 3m19_A Variable lymphocyte rec 99.8 1.2E-19 4.1E-24 160.3 4.8 157 325-482 36-192 (251)
92 1p9a_G Platelet glycoprotein I 99.8 1.4E-19 4.9E-24 162.9 3.7 201 224-431 6-206 (290)
93 2xwt_C Thyrotropin receptor; s 99.8 5.9E-20 2E-24 161.1 -0.2 194 300-502 31-233 (239)
94 3m19_A Variable lymphocyte rec 99.7 9E-19 3.1E-23 154.6 3.8 157 301-458 36-192 (251)
95 1h6t_A Internalin B; cell adhe 99.7 1.9E-17 6.5E-22 149.2 10.7 174 274-462 44-217 (291)
96 4ezg_A Putative uncharacterize 99.7 2.4E-17 8.1E-22 139.6 7.4 153 323-483 43-195 (197)
97 1h6t_A Internalin B; cell adhe 99.7 3.8E-17 1.3E-21 147.2 8.8 168 249-430 43-210 (291)
98 1m9s_A Internalin B; cell inva 99.7 1.9E-16 6.4E-21 156.3 9.9 186 273-473 40-225 (605)
99 1m9s_A Internalin B; cell inva 99.7 1.2E-16 4E-21 157.8 8.3 173 248-435 39-211 (605)
100 4ezg_A Putative uncharacterize 99.7 2E-16 7E-21 133.8 8.4 152 299-459 43-195 (197)
101 3sb4_A Hypothetical leucine ri 99.6 2.7E-17 9.3E-22 151.4 0.7 287 203-502 24-328 (329)
102 2xot_A Amphoterin-induced prot 99.6 5.6E-17 1.9E-21 151.1 2.5 156 326-482 41-202 (361)
103 3sb4_A Hypothetical leucine ri 99.6 3.9E-17 1.3E-21 150.3 1.3 284 179-476 24-328 (329)
104 2o6s_A Variable lymphocyte rec 99.6 2.3E-16 7.8E-21 134.9 5.1 153 323-483 27-179 (208)
105 2o6s_A Variable lymphocyte rec 99.6 1.1E-16 3.6E-21 137.0 2.7 162 301-470 29-190 (208)
106 2v70_A SLIT-2, SLIT homolog 2 99.6 1.6E-16 5.6E-21 136.7 3.8 132 349-481 33-165 (220)
107 2v9t_B SLIT homolog 2 protein 99.6 2.4E-16 8.4E-21 135.6 4.6 132 349-481 33-164 (220)
108 1xeu_A Internalin C; cellular 99.6 3.8E-16 1.3E-20 138.4 3.8 169 277-461 20-188 (263)
109 3un9_A NLR family member X1; l 99.6 1.6E-14 5.5E-19 134.1 14.3 185 299-484 71-285 (372)
110 4ay9_X Follicle-stimulating ho 99.6 1E-17 3.6E-22 155.5 -7.2 239 231-479 12-256 (350)
111 2v9t_B SLIT homolog 2 protein 99.6 4.3E-16 1.5E-20 134.0 3.2 132 325-457 33-164 (220)
112 3e6j_A Variable lymphocyte rec 99.6 1.2E-15 4.1E-20 132.2 5.7 133 348-482 40-172 (229)
113 2xot_A Amphoterin-induced prot 99.6 6E-16 2.1E-20 144.2 4.0 173 255-430 21-199 (361)
114 2v70_A SLIT-2, SLIT homolog 2 99.6 1E-15 3.4E-20 131.7 4.0 133 325-458 33-166 (220)
115 3cvr_A Invasion plasmid antige 99.6 2.4E-15 8.3E-20 146.6 6.6 187 252-467 59-252 (571)
116 1xeu_A Internalin C; cellular 99.5 8.2E-16 2.8E-20 136.2 1.8 167 253-435 20-186 (263)
117 3un9_A NLR family member X1; l 99.5 7.3E-14 2.5E-18 129.7 14.9 185 275-460 71-285 (372)
118 3e6j_A Variable lymphocyte rec 99.5 3.2E-15 1.1E-19 129.5 4.4 133 324-458 40-172 (229)
119 2ell_A Acidic leucine-rich nuc 99.5 3.2E-15 1.1E-19 123.0 3.7 132 348-482 24-160 (168)
120 4ay9_X Follicle-stimulating ho 99.5 1.7E-15 5.7E-20 140.6 2.0 220 82-309 31-255 (350)
121 4fs7_A Uncharacterized protein 99.5 2.1E-15 7E-20 142.4 2.3 331 73-450 63-393 (394)
122 3cvr_A Invasion plasmid antige 99.5 6E-15 2.1E-19 143.9 5.6 188 228-444 59-253 (571)
123 2je0_A Acidic leucine-rich nuc 99.5 8.5E-15 2.9E-19 117.8 5.2 127 348-477 17-148 (149)
124 4fs7_A Uncharacterized protein 99.5 2.4E-15 8.1E-20 142.0 1.1 336 93-474 58-393 (394)
125 4fdw_A Leucine rich hypothetic 99.5 7E-15 2.4E-19 137.9 4.1 263 180-480 113-381 (401)
126 1dce_A Protein (RAB geranylger 99.5 4.8E-16 1.7E-20 152.5 -4.8 103 374-482 443-546 (567)
127 2je0_A Acidic leucine-rich nuc 99.5 3E-14 1E-18 114.6 5.8 128 324-454 17-149 (149)
128 2ell_A Acidic leucine-rich nuc 99.5 1.2E-14 4.1E-19 119.6 2.9 135 323-460 23-162 (168)
129 1dce_A Protein (RAB geranylger 99.5 8.3E-16 2.8E-20 150.8 -5.7 197 273-476 346-567 (567)
130 4fdw_A Leucine rich hypothetic 99.5 3.6E-14 1.2E-18 133.1 5.5 268 155-456 113-381 (401)
131 1w8a_A SLIT protein; signaling 99.4 3.3E-14 1.1E-18 119.4 2.8 109 373-482 30-139 (192)
132 1a9n_A U2A', U2A'; complex (nu 99.4 6.9E-14 2.3E-18 115.8 4.1 107 373-482 43-153 (176)
133 2wfh_A SLIT homolog 2 protein 99.4 1.3E-13 4.5E-18 115.7 4.8 108 372-481 31-138 (193)
134 2o6r_A Variable lymphocyte rec 99.4 2.1E-13 7.2E-18 113.1 5.9 110 372-482 28-137 (177)
135 1ds9_A Outer arm dynein; leuci 99.4 7.4E-15 2.5E-19 124.3 -4.2 133 343-483 43-186 (198)
136 1a9n_A U2A', U2A'; complex (nu 99.4 2.4E-13 8.1E-18 112.6 4.5 135 321-460 16-155 (176)
137 1ds9_A Outer arm dynein; leuci 99.3 3.6E-14 1.2E-18 120.0 -3.0 152 344-501 14-180 (198)
138 1w8a_A SLIT protein; signaling 99.3 1.9E-13 6.6E-18 114.7 0.5 109 349-458 30-139 (192)
139 2o6r_A Variable lymphocyte rec 99.3 1E-12 3.4E-17 109.0 4.6 112 348-460 28-139 (177)
140 2wfh_A SLIT homolog 2 protein 99.3 7.4E-13 2.5E-17 111.0 2.7 108 348-457 31-138 (193)
141 4gt6_A Cell surface protein; l 99.2 6.8E-12 2.3E-16 118.3 5.7 129 295-430 260-388 (394)
142 3e4g_A ATP synthase subunit S, 99.2 2.9E-11 1E-15 97.1 8.5 102 396-498 61-170 (176)
143 4b8c_D Glucose-repressible alc 99.2 5.5E-13 1.9E-17 135.1 -2.0 117 296-416 220-336 (727)
144 4gt6_A Cell surface protein; l 99.2 1.1E-11 3.7E-16 116.9 6.0 130 342-479 259-388 (394)
145 3g39_A Variable lymphocyte rec 99.2 8.9E-12 3.1E-16 102.1 3.5 105 350-458 11-115 (170)
146 4b8c_D Glucose-repressible alc 99.2 1.1E-11 3.9E-16 125.5 4.9 137 341-482 217-354 (727)
147 2r9u_A Variable lymphocyte rec 99.1 1.5E-11 5E-16 101.1 3.5 104 351-458 15-118 (174)
148 2ra8_A Uncharacterized protein 99.1 6.8E-10 2.3E-14 102.0 12.9 71 419-490 251-328 (362)
149 3e4g_A ATP synthase subunit S, 99.1 1.7E-10 5.9E-15 92.6 6.9 90 57-146 61-154 (176)
150 3g39_A Variable lymphocyte rec 99.1 4E-11 1.4E-15 98.2 3.0 83 348-430 30-112 (170)
151 2r9u_A Variable lymphocyte rec 99.0 7.4E-11 2.5E-15 96.9 3.0 83 348-430 33-115 (174)
152 2ra8_A Uncharacterized protein 99.0 5.2E-09 1.8E-13 96.2 15.3 159 246-430 166-340 (362)
153 4h09_A Hypothetical leucine ri 99.0 1.8E-10 6.3E-15 108.0 3.8 98 344-445 259-356 (379)
154 1io0_A Tropomodulin; LRR prote 99.0 6.1E-09 2.1E-13 86.3 11.8 124 341-485 29-167 (185)
155 4h09_A Hypothetical leucine ri 98.9 1.2E-09 3.9E-14 102.6 7.1 312 56-397 45-357 (379)
156 1io0_A Tropomodulin; LRR prote 98.9 3.4E-08 1.2E-12 81.8 14.2 115 316-430 28-161 (185)
157 2ifg_A High affinity nerve gro 98.9 1.4E-09 4.7E-14 100.8 5.4 89 392-482 27-116 (347)
158 2ifg_A High affinity nerve gro 98.7 4.5E-09 1.5E-13 97.3 4.1 100 328-430 12-113 (347)
159 3rw6_A Nuclear RNA export fact 98.2 8.7E-07 3E-11 77.0 4.0 65 393-459 167-234 (267)
160 3rw6_A Nuclear RNA export fact 98.1 1.1E-06 3.9E-11 76.2 3.6 82 418-501 168-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 98.1 8.7E-05 3E-09 60.7 13.7 111 346-456 39-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.9 0.00019 6.3E-09 58.8 13.1 83 348-430 70-167 (197)
163 3rfe_A Platelet glycoprotein I 94.8 0.017 5.9E-07 43.9 2.9 55 400-458 12-68 (130)
164 3rfe_A Platelet glycoprotein I 94.7 0.017 6E-07 43.8 2.8 53 376-431 12-66 (130)
165 2lz0_A Uncharacterized protein 80.4 0.64 2.2E-05 33.1 1.5 42 72-115 11-52 (100)
166 2lz0_A Uncharacterized protein 70.2 1.1 3.8E-05 31.8 0.5 40 413-454 13-52 (100)
No 1
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.8e-45 Score=365.57 Aligned_cols=437 Identities=21% Similarity=0.228 Sum_probs=244.1
Q ss_pred CCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcEE
Q 010711 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (503)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (503)
+.++.|+++++.+++..+..|.++++|++|++++| .+....+.+|+.+++|++|++++|. +....|..+.++++|++|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANP-LIFMAETALSGPKALKHL 110 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CSEECTTTTSSCTTCCEE
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCC-ccceeChhhccCccccCeeeCCCCc-ccccChhhhcccccccEe
Confidence 45666777776666555556666777777777665 4555555666666677777776665 334445566666677777
Q ss_pred eccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCC--EEEcCCC
Q 010711 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT--LLNLEGC 214 (503)
Q Consensus 137 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~--~L~l~~~ 214 (503)
++++|......+..+.++++|++|++++|. +.......+..+++|++|+++++.+....+..+..+++|+ .+++++|
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred eccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence 776654333334556666666666666644 2222223333466666666666666655555555555555 5555555
Q ss_pred CCcH---------------------------------------------------------------------------H
Q 010711 215 PVTA---------------------------------------------------------------------------A 219 (503)
Q Consensus 215 ~~~~---------------------------------------------------------------------------~ 219 (503)
.+.. .
T Consensus 190 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~ 269 (606)
T 3t6q_A 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI 269 (606)
T ss_dssp CCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC
T ss_pred ccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCcc
Confidence 4332 1
Q ss_pred HHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCCh-hHHHHHhc
Q 010711 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTG 298 (503)
Q Consensus 220 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~l~~ 298 (503)
.+..+..+++|++|++++|.+.. .+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.. .....+..
T Consensus 270 ~~~~~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (606)
T 3t6q_A 270 SSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348 (606)
T ss_dssp CTTTTTTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred CHHHhccccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc
Confidence 11223444555555555555542 33344555555555555555554444444555555555555554431 12223445
Q ss_pred CCCCCEEecCCCccChhh--HHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHH-HhhcCCCCCC
Q 010711 299 LCNLKCLELSDTQVGSSG--LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLT 375 (503)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~ 375 (503)
+++|++|++++|.+.... ...+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+ ..+..+++|+
T Consensus 349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 428 (606)
T 3t6q_A 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428 (606)
T ss_dssp CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCC
Confidence 555666666555554433 3344555666666666665554444445556666666666665554322 2245566666
Q ss_pred EEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhH---HHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEec
Q 010711 376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG---VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452 (503)
Q Consensus 376 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l 452 (503)
.|++++|.+....+..+..+++|++|++++|.+.+.. +..+..+++|+.|++++| .++...+..+.++++|+.|++
T Consensus 429 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L 507 (606)
T 3t6q_A 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDL 507 (606)
T ss_dssp EEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEC
T ss_pred EEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccChhhhccccCCCEEEC
Confidence 6666666665555555566666666666666655421 134555666666666666 566655556666666666666
Q ss_pred ccCccchhhHhhccCCcccceEEeccCCCCHHHHHHHHhcCCCCccccc
Q 010711 453 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 501 (503)
Q Consensus 453 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~ 501 (503)
++|+++...+..+..+++| .|++++|.++......+. .+++|+.+.
T Consensus 508 s~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~--~l~~L~~L~ 553 (606)
T 3t6q_A 508 SHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLP--ILSQQRTIN 553 (606)
T ss_dssp CSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHH--HHHTSSEEE
T ss_pred CCCccCcCChhHhCccccc-EEECcCCcccccCHhhcc--cCCCCCEEe
Confidence 6666666666666666666 666666665543332232 334555444
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-45 Score=379.09 Aligned_cols=443 Identities=21% Similarity=0.192 Sum_probs=210.7
Q ss_pred ceeEEecCCCCCCChhHHHH--HHhcCCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCC
Q 010711 32 ALQDLCLGQYPGVNDKWMDV--IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLT 109 (503)
Q Consensus 32 ~l~~l~l~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 109 (503)
.++.+.+..+. +....... ....+++|+.|+++++.+.+.. .+..+++|++|++++| .+....+. ++.+++|+
T Consensus 152 ~L~~L~Ls~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~l~~L~~L~Ls~n-~l~~~~~~-l~~l~~L~ 226 (768)
T 3rgz_A 152 SLEVLDLSANS-ISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSN-NFSTGIPF-LGDCSALQ 226 (768)
T ss_dssp TCSEEECCSSC-CEEETHHHHHHTTCCTTCCEEECCSSEEESCC--BCTTCTTCCEEECCSS-CCCSCCCB-CTTCCSCC
T ss_pred CCCEEECCCCc-cCCcCChhhhhhccCCCCCEEECCCCcccccC--CcccCCcCCEEECcCC-cCCCCCcc-cccCCCCC
Confidence 46666665442 22111111 1234555666666555544322 1245555555555554 22222122 45555555
Q ss_pred EEEcCCCccccHHHHHHHhCCCCCcEEeccCcccc----------------------cCccccccC-CccccEeeccCCc
Q 010711 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI----------------------HGGLVNLKG-LMKLESLNIKWCN 166 (503)
Q Consensus 110 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~----------------------~~~~~~~~~-l~~L~~L~l~~~~ 166 (503)
+|++++|. +.+..|..+.++++|++|++++|... ...+..+.. +++|++|++++|.
T Consensus 227 ~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~ 305 (768)
T 3rgz_A 227 HLDISGNK-LSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH 305 (768)
T ss_dssp EEECCSSC-CCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE
T ss_pred EEECcCCc-CCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc
Confidence 55555554 33344555555555555555554322 222333322 2445555554432
Q ss_pred CCCccccccccCCCCCCEEEeecccCCchhH-HhhhcCCCCCEEEcCCCCCcHHHHHHhhC-------------------
Q 010711 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSA------------------- 226 (503)
Q Consensus 167 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~------------------- 226 (503)
+....+..+..+++|++|+++++.+.+..+ ..+..+++|++|++++|.+....+..+..
T Consensus 306 -l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~ 384 (768)
T 3rgz_A 306 -FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384 (768)
T ss_dssp -EEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEEC
T ss_pred -CCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCc
Confidence 222233444455555555555554442222 22445555555555555433222222222
Q ss_pred --------CCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhc
Q 010711 227 --------LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298 (503)
Q Consensus 227 --------l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 298 (503)
+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..
T Consensus 385 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 464 (768)
T 3rgz_A 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464 (768)
T ss_dssp CTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred ChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcC
Confidence 223333333333333333344444445555555554444333444444555555555555444444444445
Q ss_pred CCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEE
Q 010711 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378 (503)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 378 (503)
+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..++.+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 465 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 544 (768)
T 3rgz_A 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence 55555555555555444444455555555555555555544444455555555555555555544444455555555555
Q ss_pred ccCCccChHHHHH-------------------------------------------------------------------
Q 010711 379 LFGARITDSGAAY------------------------------------------------------------------- 391 (503)
Q Consensus 379 l~~~~~~~~~~~~------------------------------------------------------------------- 391 (503)
+++|.+....|..
T Consensus 545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~ 624 (768)
T 3rgz_A 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624 (768)
T ss_dssp CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred CCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence 5555443211111
Q ss_pred ---HhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCC
Q 010711 392 ---LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 468 (503)
Q Consensus 392 ---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~ 468 (503)
+..+++|+.|++++|.+++..+..++.++.|+.|++++| .+++..|..+.++++|+.|++++|+++...|..+..+
T Consensus 625 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N-~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l 703 (768)
T 3rgz_A 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN-DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703 (768)
T ss_dssp CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC-ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCC
Confidence 112344555555555555555555555555555566555 5555555555555556666666655555555555555
Q ss_pred cccceEEeccCCCC
Q 010711 469 KNLRSLTLESCKVT 482 (503)
Q Consensus 469 ~~L~~L~l~~~~~~ 482 (503)
++|++|++++|+++
T Consensus 704 ~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 704 TMLTEIDLSNNNLS 717 (768)
T ss_dssp CCCSEEECCSSEEE
T ss_pred CCCCEEECcCCccc
Confidence 55666666555543
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.1e-45 Score=373.05 Aligned_cols=436 Identities=23% Similarity=0.220 Sum_probs=259.9
Q ss_pred cCCCeeEEEccCCCCChhhhh--hccCCCCCCEEecCCCeecChhhHHHh-hCCCCCCEEEcCCCccccHHHHHH---Hh
Q 010711 55 QGSSLLSVDLSGSDVTDSGLI--HLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKA---FA 128 (503)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~---~~ 128 (503)
.+++|++|+++++.+.+..+. .++++++|++|++++|. +....+..+ .++++|++|++++|. +.+..+.. +.
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~ 175 (768)
T 3rgz_A 98 CSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLSANS-ISGANVVGWVLSD 175 (768)
T ss_dssp CCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSE-EECCSSCCSCCCCTTCSEEECCSSC-CEEETHHHHHHTT
T ss_pred cCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCc-cCCcCCHHHhccCCCCCEEECCCCc-cCCcCChhhhhhc
Confidence 357777888887777766666 67778888888888763 332222222 567788888888776 34444544 67
Q ss_pred CCCCCcEEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCE
Q 010711 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208 (503)
Q Consensus 129 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 208 (503)
++++|++|++++|...... .+..+++|++|++++|.... ..+ .+..+++|++|+++++.+.+..+..+..+++|++
T Consensus 176 ~l~~L~~L~Ls~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~-~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 251 (768)
T 3rgz_A 176 GCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFST-GIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKL 251 (768)
T ss_dssp CCTTCCEEECCSSEEESCC--BCTTCTTCCEEECCSSCCCS-CCC-BCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCE
T ss_pred cCCCCCEEECCCCcccccC--CcccCCcCCEEECcCCcCCC-CCc-ccccCCCCCEEECcCCcCCCcccHHHhcCCCCCE
Confidence 7888888888876533222 23678888888888865433 222 3778888888888888888777778888888888
Q ss_pred EEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhc-CCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCC
Q 010711 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287 (503)
Q Consensus 209 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 287 (503)
|++++|.+....+.. .+++|++|++++|.+....+..+.. +++|++|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 252 L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 329 (768)
T 3rgz_A 252 LNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329 (768)
T ss_dssp EECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE
T ss_pred EECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc
Confidence 888888765432221 5667777777777665444554444 3677777777776665555666677777777777776
Q ss_pred CCh-hHHHHHhcCCCCCEEecCCCccChhhHHHhhCCC-CCCeeeccCCCCChHHHHHHhC--CCCCCEeecCCCCCCHh
Q 010711 288 IGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT-NLESINLSFTGISDGSLRKLAG--LSSLKSLNLDARQITDT 363 (503)
Q Consensus 288 ~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~ 363 (503)
+.+ .+...+..+++|++|++++|.+.+..+..+..++ +|+.|++++|.+....+..+.. +++|++|++++|.+++.
T Consensus 330 l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 409 (768)
T 3rgz_A 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409 (768)
T ss_dssp EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE
T ss_pred ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc
Confidence 552 2333466677777777777765543333333333 5555555555443322222222 44555555555555544
Q ss_pred HHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhc
Q 010711 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443 (503)
Q Consensus 364 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 443 (503)
.+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++| .++...+..+.+
T Consensus 410 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~ 488 (768)
T 3rgz_A 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN-DLTGEIPSGLSN 488 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGG
T ss_pred cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC-cccCcCCHHHhc
Confidence 4444555555555555555554444444555555555555555555444445555555555555555 444444445555
Q ss_pred CCCCcEEecccCccchhhHhhccCCcccceEEeccCCCCHHHHHHHHhcCCCCccccc
Q 010711 444 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 501 (503)
Q Consensus 444 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~ 501 (503)
+++|+.|++++|++....|..+..+++|++|++++|.++......+. .+++|+.|+
T Consensus 489 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~ 544 (768)
T 3rgz_A 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG--DCRSLIWLD 544 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGG--GCTTCCEEE
T ss_pred CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHc--CCCCCCEEE
Confidence 55555555555555544445555555555555555555433333332 444554443
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.6e-43 Score=355.93 Aligned_cols=422 Identities=21% Similarity=0.186 Sum_probs=325.5
Q ss_pred cCCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCc
Q 010711 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (503)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 134 (503)
.+++|++|+++++.+.+..+..|.++++|++|++++| .+....+..|+.+++|++|++++|. +....+..+.++++|+
T Consensus 55 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~ 132 (606)
T 3t6q_A 55 RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLE 132 (606)
T ss_dssp TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSEECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCC
T ss_pred cCccceEEECCCCccceeChhhccCccccCeeeCCCC-cccccChhhhcccccccEeeccccC-cccCCcchhccCCccc
Confidence 4666777777777666655666677777777777765 4555555566667777777777665 3343445566666777
Q ss_pred EEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCC-------------------------------
Q 010711 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK------------------------------- 183 (503)
Q Consensus 135 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~------------------------------- 183 (503)
+|++++|.......+.+..+++|++|++++|. +....+..+..+++|+
T Consensus 133 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 211 (606)
T 3t6q_A 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211 (606)
T ss_dssp EEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTT
T ss_pred EEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCC
Confidence 77776654333222333336666666666543 3333333344444444
Q ss_pred ----------------------------------------------EEEeecccCCchhHHhhhcCCCCCEEEcCCCCCc
Q 010711 184 ----------------------------------------------SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217 (503)
Q Consensus 184 ----------------------------------------------~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 217 (503)
.++++++.+.......+..+++|+.|++++|.+.
T Consensus 212 ~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 291 (606)
T 3t6q_A 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS 291 (606)
T ss_dssp CSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS
T ss_pred chhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC
Confidence 4444444444444445777899999999999887
Q ss_pred HHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHH-HHhhCCCCCCEEEccCCCCChhH--HH
Q 010711 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTNLESLNLDSCGIGDEG--LV 294 (503)
Q Consensus 218 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~--~~ 294 (503)
. .+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+ ..+..+++|+.|++++|.+.... +.
T Consensus 292 ~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 370 (606)
T 3t6q_A 292 E-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370 (606)
T ss_dssp C-CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT
T ss_pred C-CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcch
Confidence 4 35567889999999999999998878889999999999999997764333 34778999999999999887655 56
Q ss_pred HHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHH-HHHhCCCCCCEeecCCCCCCHhHHHhhcCCCC
Q 010711 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373 (503)
Q Consensus 295 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 373 (503)
.+..+++|++|++++|.+.......+..+++|+.|++++|.+....+ ..+..+++|++|++++|.+....+..+..+++
T Consensus 371 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 450 (606)
T 3t6q_A 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450 (606)
T ss_dssp TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence 78889999999999999887777788899999999999998765433 33778999999999999998877788889999
Q ss_pred CCEEEccCCccChHH---HHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEE
Q 010711 374 LTHLDLFGARITDSG---AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450 (503)
Q Consensus 374 L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L 450 (503)
|+.|++++|.+.... +..+..+++|+.|++++|.+++..+..+..+++|+.|++++| .++...+..+.++++| .|
T Consensus 451 L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L 528 (606)
T 3t6q_A 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YL 528 (606)
T ss_dssp CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EE
T ss_pred CCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC-ccCcCChhHhCccccc-EE
Confidence 999999999887632 246788999999999999999988888999999999999999 8999899999999999 99
Q ss_pred ecccCccchhhHhhccCCcccceEEeccCCCC
Q 010711 451 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482 (503)
Q Consensus 451 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 482 (503)
++++|.++...+..+..+++|+.|++++|+++
T Consensus 529 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 529 NLASNHISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp ECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred ECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence 99999999988888889999999999999875
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.7e-42 Score=351.72 Aligned_cols=181 Identities=23% Similarity=0.301 Sum_probs=114.5
Q ss_pred hhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCC--HhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCC
Q 010711 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT--DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397 (503)
Q Consensus 320 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 397 (503)
+..+++|+.|++++|.+....+..+..+++|+.|++++|.+. +..+..+..+++|+.|++++|.+...++..+..+++
T Consensus 426 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~ 505 (680)
T 1ziw_A 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 505 (680)
T ss_dssp GTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccc
Confidence 334444444444444333322333444455555555554443 222344566777777777777777666666777778
Q ss_pred CCeEEecCCCCChhHHH--------hhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCc
Q 010711 398 LRSLEICGGGLTDAGVK--------HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 469 (503)
Q Consensus 398 L~~L~l~~~~~~~~~~~--------~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~ 469 (503)
|+.|++++|.+++.... .+..+++|+.|++++| .++..++..|.++++|+.|++++|.++.+++..+..++
T Consensus 506 L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~ 584 (680)
T 1ziw_A 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV 584 (680)
T ss_dssp CCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCC
Confidence 88888888777654222 2566778888888887 67766666677888888888888888877667777788
Q ss_pred ccceEEeccCCCCHHHHHHHHhcCCCCcccccC
Q 010711 470 NLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 502 (503)
Q Consensus 470 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~ 502 (503)
+|+.|++++|.++......+. ..+++|+.+.+
T Consensus 585 ~L~~L~L~~N~l~~~~~~~~~-~~~~~L~~l~l 616 (680)
T 1ziw_A 585 SLKSLNLQKNLITSVEKKVFG-PAFRNLTELDM 616 (680)
T ss_dssp TCCEEECTTSCCCBCCHHHHH-HHHTTCSEEEC
T ss_pred CCCEEECCCCcCCccChhHhc-ccccccCEEEc
Confidence 888888888877765544332 23456665543
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.8e-42 Score=345.28 Aligned_cols=433 Identities=23% Similarity=0.229 Sum_probs=278.8
Q ss_pred CCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcE
Q 010711 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (503)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (503)
.+++++|+++++.+++..+..|.++++|++|++++| .+....+.+|.++++|++|++++|. +....|..|+++++|++
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLEN 108 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCc-ccccChhhcCCcccCCE
Confidence 356777777777777666666777777777777776 5665556667777777777777775 44555677777777777
Q ss_pred EeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCC-----------
Q 010711 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ----------- 204 (503)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~----------- 204 (503)
|++++|......+..++++++|++|++++|.......+..+.++++|++|+++++.+....+..+..++
T Consensus 109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l 188 (606)
T 3vq2_A 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188 (606)
T ss_dssp EECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEEC
T ss_pred EEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeec
Confidence 777776544444455777777777777775533323456677777777777777766654443333222
Q ss_pred ----------------CCCEEEcCCCCCc-HHHHHHhhCCCCCC------------------------------------
Q 010711 205 ----------------KLTLLNLEGCPVT-AACLDSLSALGSLF------------------------------------ 231 (503)
Q Consensus 205 ----------------~L~~L~l~~~~~~-~~~~~~l~~l~~L~------------------------------------ 231 (503)
+|+.|++++|.+. ...+..+..+++++
T Consensus 189 ~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 268 (606)
T 3vq2_A 189 SLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268 (606)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEE
T ss_pred cCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheec
Confidence 3444444444332 12222233333333
Q ss_pred --------------------EEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChh
Q 010711 232 --------------------YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291 (503)
Q Consensus 232 --------------------~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 291 (503)
.+++.++.+.... .+..+++|+.|++++|.+. ..+ .+ .+++|+.|++++|.....
T Consensus 269 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~~~ 343 (606)
T 3vq2_A 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGSIS 343 (606)
T ss_dssp CCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESCSSCEE
T ss_pred cccccccccccccccCCCCCEEEecCccchhhh--hccccccCCEEEcccccCc-ccc-cC-CCCccceeeccCCcCccc
Confidence 3333333222111 2333344444444444442 222 12 445555555555422211
Q ss_pred HHHHHhcCCCCCEEecCCCccChhh--HHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHH-Hhh
Q 010711 292 GLVNLTGLCNLKCLELSDTQVGSSG--LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AAL 368 (503)
Q Consensus 292 ~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~ 368 (503)
. .+..+++|++|++++|.+.... ...+..+++|+.|++++|.+.... ..+..+++|+.|++++|.+.+..+ ..+
T Consensus 344 ~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 420 (606)
T 3vq2_A 344 F--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAF 420 (606)
T ss_dssp C--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTT
T ss_pred h--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhh
Confidence 1 3345667777777777665432 445667777888887777665422 445677888888888887776554 566
Q ss_pred cCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChh-HHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCC
Q 010711 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA-GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447 (503)
Q Consensus 369 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L 447 (503)
..+++|+.|++++|.+....+..+..+++|++|++++|.+.+. .+..+..+++|+.|++++| .++...+..+.++++|
T Consensus 421 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L 499 (606)
T 3vq2_A 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRL 499 (606)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTC
T ss_pred hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhcccccC
Confidence 7788888888888888776677778888888888888888763 5667778888999999888 7888777788888999
Q ss_pred cEEecccCccchhhHhhccCCcccceEEeccCCCCHHHHHHHHhcCCC-CcccccC
Q 010711 448 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP-NLVSFRP 502 (503)
Q Consensus 448 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~l~~ 502 (503)
+.|++++|+++...+..+..+++|++|++++|.++..... +. .+| +|+.+.+
T Consensus 500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~~--~l~~~L~~l~l 552 (606)
T 3vq2_A 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-LQ--HFPKSLAFFNL 552 (606)
T ss_dssp CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-GG--GSCTTCCEEEC
T ss_pred CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-Hh--hhcccCcEEEc
Confidence 9999999988888788888888999999999988743322 33 555 4777654
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1e-41 Score=347.48 Aligned_cols=442 Identities=21% Similarity=0.242 Sum_probs=250.4
Q ss_pred cCCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCc
Q 010711 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (503)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 134 (503)
.+++|++|+++++.+++..+..+.++++|++|++++| .+.......|+.+++|++|++++|. +....+..|.++++|+
T Consensus 47 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLI 124 (680)
T ss_dssp GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCC
T ss_pred CCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCC
Confidence 4677788888877777666666777788888888776 5555555567777788888887775 3444455677777888
Q ss_pred EEeccCcccccCccccccCCccccEeeccCCcCCCccccccc--cCCCCCCEEEeecccCCchhHHhhhcC---------
Q 010711 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL--SGLTNLKSLQISCSKVTDSGIAYLKGL--------- 203 (503)
Q Consensus 135 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~l~~~--------- 203 (503)
+|++++|......+..+.++++|++|++++|. +....+..+ ..+++|++|+++++.+....+..+..+
T Consensus 125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 203 (680)
T 1ziw_A 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203 (680)
T ss_dssp EEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECT
T ss_pred EEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcc
Confidence 88887765444455566777788888887754 333333333 245778888887776654443333332
Q ss_pred ------------------CCCCEEEcCCCCCcHHHHHHhhCC--CCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCC
Q 010711 204 ------------------QKLTLLNLEGCPVTAACLDSLSAL--GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263 (503)
Q Consensus 204 ------------------~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 263 (503)
++|+.|+++++.+....+..+..+ ++|+.|++++|.+....+..+..+++|++|++++|.
T Consensus 204 ~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp TCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC
T ss_pred ccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc
Confidence 233334444443332222233333 236666666655555444555555666666665555
Q ss_pred CChHHHHHhh---------------------------------CCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCC
Q 010711 264 ITDECLVHLK---------------------------------GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310 (503)
Q Consensus 264 ~~~~~~~~l~---------------------------------~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 310 (503)
+....+..+. .+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus 284 l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp BSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred cCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCC
Confidence 4433333333 3444555555555444433344444555555555443
Q ss_pred ccChh--hHHHhh--CCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCC-------------------------
Q 010711 311 QVGSS--GLRHLS--GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT------------------------- 361 (503)
Q Consensus 311 ~~~~~--~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------------------------- 361 (503)
.+... ....+. ..++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 364 ~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 443 (680)
T 1ziw_A 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443 (680)
T ss_dssp BSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEE
T ss_pred chhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcc
Confidence 21100 000000 0122333333333333333333444555555555555543
Q ss_pred HhHHHhhcCCCCCCEEEccCCccC--hHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhH-
Q 010711 362 DTGLAALTSLTGLTHLDLFGARIT--DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL- 438 (503)
Q Consensus 362 ~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~- 438 (503)
...+..+..+++|+.|++++|.+. ...+..+..+++|+.|++++|.+++..+..+..+++|+.|++++| .++....
T Consensus 444 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~ 522 (680)
T 1ziw_A 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN-NLARLWKH 522 (680)
T ss_dssp ECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCGGGGST
T ss_pred eeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCC-Cccccchh
Confidence 333333444445555555544433 122344566777777777777777666666777777777777777 5555422
Q ss_pred -------HHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCCHHHHHHHHhcCCCCcccccC
Q 010711 439 -------ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 502 (503)
Q Consensus 439 -------~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~ 502 (503)
..+.++++|+.|++++|.+..+++..+..+++|+.|++++|.++......+. .+++|+.|.+
T Consensus 523 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~l~~L~~L~L 591 (680)
T 1ziw_A 523 ANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN--NQVSLKSLNL 591 (680)
T ss_dssp TSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEEC
T ss_pred hccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhC--CCCCCCEEEC
Confidence 1256677888888888877776666677788888888888877754433333 6677777654
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=9.6e-42 Score=343.07 Aligned_cols=416 Identities=20% Similarity=0.189 Sum_probs=319.2
Q ss_pred cCCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCc
Q 010711 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (503)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 134 (503)
.+++|++|+++++.+++..+..|.++++|++|++++| .+....+..|+.+++|++|++++|. +....+..++++++|+
T Consensus 54 ~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 131 (606)
T 3vq2_A 54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLK 131 (606)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCC
T ss_pred CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-cccccChhhcCCcccCCEEEccCCc-cccccccccCCCCCCC
Confidence 4677777888777777666666777777888887776 4555556677777777777777775 3333344577777777
Q ss_pred EEeccCccccc-CccccccCCccccEeeccCCcCCCcccccccc---------------------------CCCCCCEEE
Q 010711 135 KLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLS---------------------------GLTNLKSLQ 186 (503)
Q Consensus 135 ~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~---------------------------~l~~L~~L~ 186 (503)
+|++++|.... ..+..+.++++|++|++++|. +....+..+. ...+|++|+
T Consensus 132 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~ 210 (606)
T 3vq2_A 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELT 210 (606)
T ss_dssp EEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred EEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeee
Confidence 77777765433 346667777777777777653 2222221111 122567777
Q ss_pred eecccCCch-hH--------------------------------------------------------HhhhcCCCCCEE
Q 010711 187 ISCSKVTDS-GI--------------------------------------------------------AYLKGLQKLTLL 209 (503)
Q Consensus 187 l~~~~~~~~-~~--------------------------------------------------------~~l~~~~~L~~L 209 (503)
++++.+... .+ ..+..+++|+.+
T Consensus 211 L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L 290 (606)
T 3vq2_A 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM 290 (606)
T ss_dssp EESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEE
T ss_pred ccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEE
Confidence 766654311 11 114556778888
Q ss_pred EcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCC
Q 010711 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289 (503)
Q Consensus 210 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 289 (503)
+++++.+.... .+..+++|+.|++++|.+. ..+ .+ .+++|+.|++++|...... .+..+++|+.|++++|.+.
T Consensus 291 ~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~ 363 (606)
T 3vq2_A 291 SLAGVSIKYLE--DVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALS 363 (606)
T ss_dssp EEESCCCCCCC--CCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEE
T ss_pred EecCccchhhh--hccccccCCEEEcccccCc-ccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccC
Confidence 88888775532 6778899999999999994 344 45 8999999999998544333 4668899999999999876
Q ss_pred hhH--HHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHH-HHHhCCCCCCEeecCCCCCCHhHHH
Q 010711 290 DEG--LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLA 366 (503)
Q Consensus 290 ~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~ 366 (503)
... +..+..+++|++|++++|.+.... ..+..+++|+.|++++|.+....+ ..+..+++|++|++++|.+....+.
T Consensus 364 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 442 (606)
T 3vq2_A 364 FSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442 (606)
T ss_dssp EEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT
T ss_pred CCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh
Confidence 542 567889999999999999876643 567889999999999998776554 5677899999999999999887778
Q ss_pred hhcCCCCCCEEEccCCccChH-HHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCC
Q 010711 367 ALTSLTGLTHLDLFGARITDS-GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 445 (503)
Q Consensus 367 ~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~ 445 (503)
.+..+++|+.|++++|.+... .+..+..+++|++|++++|.+++..+..+..+++|+.|++++| .++...+..+.+++
T Consensus 443 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~ 521 (606)
T 3vq2_A 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLY 521 (606)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCT
T ss_pred hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCC
Confidence 888999999999999998873 4667889999999999999999988888999999999999999 89988888999999
Q ss_pred CCcEEecccCccchhhHhhccCCc-ccceEEeccCCCCH
Q 010711 446 GLVSLNVSNSRITSAGLRHLKPLK-NLRSLTLESCKVTA 483 (503)
Q Consensus 446 ~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~ 483 (503)
+|+.|++++|+++.++ ..+..++ +|++|++++|++.-
T Consensus 522 ~L~~L~l~~N~l~~~p-~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 522 SLSTLDCSFNRIETSK-GILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp TCCEEECTTSCCCCEE-SCGGGSCTTCCEEECCSCCCCC
T ss_pred cCCEEECCCCcCcccC-HhHhhhcccCcEEEccCCCccc
Confidence 9999999999999754 4477787 69999999998763
No 9
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.9e-39 Score=322.55 Aligned_cols=415 Identities=20% Similarity=0.186 Sum_probs=294.3
Q ss_pred CCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcE
Q 010711 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (503)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (503)
.+++++|+++++.+++..+..|.++++|++|++++| .+....+..|..+++|++|++++|. +....+..++++++|++
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCE
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcE
Confidence 367888999988888776777888899999999887 6666666778888899999998886 45666777888889999
Q ss_pred EeccCccccc-CccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCC
Q 010711 136 LDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214 (503)
Q Consensus 136 L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 214 (503)
|++++|.... ..+..+.++++|++|++++|..........+..+++|++|+++++.+....+..+..+++|+.|+++++
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 9998865433 335667888889999988876555555567788888888888888888777777888888888888888
Q ss_pred CCcHHHHHHhhCCCCCCEEEccCCCCChhh---hHhhhcCCCCCEEEccCCCCChHHHHHh-------------------
Q 010711 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDG---CEKFSKIGSLKVLNLGFNEITDECLVHL------------------- 272 (503)
Q Consensus 215 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~~l------------------- 272 (503)
.+.......+..+++|++|++++|.+.... ......+++|+.|+++++.+.+..+..+
T Consensus 183 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp BSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred cccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence 766544334456788888888887766421 0111234455555555554443222211
Q ss_pred --------------------------------------------hCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecC
Q 010711 273 --------------------------------------------KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308 (503)
Q Consensus 273 --------------------------------------------~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 308 (503)
...++|+.|++++|.+...+...+..+++|++|+++
T Consensus 263 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls 342 (549)
T 2z81_A 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLS 342 (549)
T ss_dssp EECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECC
T ss_pred ccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEcc
Confidence 112455666666665554444444567778888888
Q ss_pred CCccChhhHH---HhhCCCCCCeeeccCCCCChHHH--HHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCc
Q 010711 309 DTQVGSSGLR---HLSGLTNLESINLSFTGISDGSL--RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383 (503)
Q Consensus 309 ~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 383 (503)
+|.+.+..+. .+..+++|+.|++++|.++.... ..+..+++|++|++++|.++.. +..+..+++|+.|++++|.
T Consensus 343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCC-CSCCCCCTTCCEEECTTSC
T ss_pred CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccC-ChhhcccccccEEECCCCC
Confidence 7777665432 25667778888888887776543 4566778888888888777742 3445567778888888877
Q ss_pred cChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHh
Q 010711 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463 (503)
Q Consensus 384 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 463 (503)
+...+.. ..++|+.|++++|.+++. +..+++|+.|++++| +++.++. ...+++|+.|++++|+++...+.
T Consensus 422 l~~l~~~---~~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N-~l~~ip~--~~~l~~L~~L~Ls~N~l~~~~~~ 491 (549)
T 2z81_A 422 IRVVKTC---IPQTLEVLDVSNNNLDSF----SLFLPRLQELYISRN-KLKTLPD--ASLFPVLLVMKISRNQLKSVPDG 491 (549)
T ss_dssp CSCCCTT---SCTTCSEEECCSSCCSCC----CCCCTTCCEEECCSS-CCSSCCC--GGGCTTCCEEECCSSCCCCCCTT
T ss_pred cccccch---hcCCceEEECCCCChhhh----cccCChhcEEECCCC-ccCcCCC--cccCccCCEEecCCCccCCcCHH
Confidence 6643211 135788888888877763 246789999999999 7775443 45688999999999999988777
Q ss_pred hccCCcccceEEeccCCCCH
Q 010711 464 HLKPLKNLRSLTLESCKVTA 483 (503)
Q Consensus 464 ~l~~~~~L~~L~l~~~~~~~ 483 (503)
.+..+++|+.|++++|+++.
T Consensus 492 ~~~~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 492 IFDRLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp GGGGCTTCCEEECCSSCBCC
T ss_pred HHhcCcccCEEEecCCCccC
Confidence 88889999999999998764
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.5e-42 Score=344.13 Aligned_cols=419 Identities=23% Similarity=0.243 Sum_probs=271.4
Q ss_pred CCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcE
Q 010711 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (503)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (503)
.++++.|+++++.+++..+..|.++++|++|++++| .+....+.+|+++++|++|++++|. +....+..|.++++|++
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQK 104 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCcccccc
Confidence 456888888888887766667888888888888887 5666666778888888888888886 44555677888888888
Q ss_pred EeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCC----CEEEc
Q 010711 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL----TLLNL 211 (503)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L----~~L~l 211 (503)
|++++|.........++++++|++|++++|.......+..+.++++|++|+++++.+....+..+..+++| ..+++
T Consensus 105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp EECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred ccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence 88888643333333577888888888887653332345677788888888888887776655566665555 67777
Q ss_pred CCCCCcHHHHHHhhCCCCCCEEEccCCCC---------------------------------------------------
Q 010711 212 EGCPVTAACLDSLSALGSLFYLNLNRCQL--------------------------------------------------- 240 (503)
Q Consensus 212 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~--------------------------------------------------- 240 (503)
++|.+....+..+... +|+.+++.++..
T Consensus 185 ~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 263 (570)
T 2z63_A 185 SLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263 (570)
T ss_dssp TTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred CCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence 7776544322222222 344443333210
Q ss_pred -------ChhhhHhhhcCCCCCEEEccCCCCChHHHHHhh--------------------CCCCCCEEEccCCCCChhHH
Q 010711 241 -------SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK--------------------GLTNLESLNLDSCGIGDEGL 293 (503)
Q Consensus 241 -------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~--------------------~~~~L~~L~l~~~~~~~~~~ 293 (503)
....+..+..+++|+.++++++.+.. .+..+. .+++|+.|++.++.+....+
T Consensus 264 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~ 342 (570)
T 2z63_A 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 342 (570)
T ss_dssp EEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCC
T ss_pred hhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccc
Confidence 01111223334455555555444331 222222 34445555555443322211
Q ss_pred HHHhcCCCCCEEecCCCccChhh--HHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHH-HhhcC
Q 010711 294 VNLTGLCNLKCLELSDTQVGSSG--LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AALTS 370 (503)
Q Consensus 294 ~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~ 370 (503)
. ..+++|++|++++|.+.... ...+..+++|+.|++++|.+...... +..+++|++|++++|.+....+ ..+..
T Consensus 343 ~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 419 (570)
T 2z63_A 343 E--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLS 419 (570)
T ss_dssp C--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTT
T ss_pred c--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhc
Confidence 1 35667777777777665432 34556677777777777766543333 5667777777777776665433 34567
Q ss_pred CCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCC-hhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcE
Q 010711 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT-DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 449 (503)
Q Consensus 371 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~ 449 (503)
+++|+.|++++|.+....+..+..+++|++|++++|.+. +..+..+..+++|+.|++++| .++...+..+.++++|+.
T Consensus 420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 498 (570)
T 2z63_A 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQV 498 (570)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCE
T ss_pred CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCE
Confidence 777888888777776666666777778888888877775 344556677778888888887 677766677777788888
Q ss_pred EecccCccchhhHhhccCCcccceEEeccCCCC
Q 010711 450 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482 (503)
Q Consensus 450 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 482 (503)
|++++|+++..++..+..+++|+.|++++|+++
T Consensus 499 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 888888777776667777788888888887665
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.8e-41 Score=350.35 Aligned_cols=419 Identities=22% Similarity=0.213 Sum_probs=241.2
Q ss_pred cCCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCc
Q 010711 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (503)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 134 (503)
..+++++|+++++.+++..+..|+++++|++|++++|.......+.+|+++++|++|++++|. +....|.+|.++++|+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLF 100 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSCSCSSCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHccCCcccC
Confidence 367899999999999877778899999999999999855555557788999999999999986 4566688899999999
Q ss_pred EEeccCcccccCccc--cccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcC--CC-----
Q 010711 135 KLDLERCTRIHGGLV--NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL--QK----- 205 (503)
Q Consensus 135 ~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~--~~----- 205 (503)
+|++++|......+. .+.++++|++|++++|..........+.++++|++|+++++.+....+..+..+ ++
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence 999999754443443 388899999999998765443334578889999999999887765444444333 34
Q ss_pred -------------------------CCEEEcCCCCCcHHHHHHh------------------------------------
Q 010711 206 -------------------------LTLLNLEGCPVTAACLDSL------------------------------------ 224 (503)
Q Consensus 206 -------------------------L~~L~l~~~~~~~~~~~~l------------------------------------ 224 (503)
|+.|++++|.+....+..+
T Consensus 181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f 260 (844)
T 3j0a_A 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260 (844)
T ss_dssp ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence 4555555543321111111
Q ss_pred hC--CCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCC
Q 010711 225 SA--LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302 (503)
Q Consensus 225 ~~--l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 302 (503)
.+ .++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|
T Consensus 261 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 340 (844)
T 3j0a_A 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340 (844)
T ss_dssp TTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTC
T ss_pred hccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCC
Confidence 11 1345555555555554444455555666666666665554444445555666666666665554444455555666
Q ss_pred CEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhH------------------
Q 010711 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG------------------ 364 (503)
Q Consensus 303 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~------------------ 364 (503)
+.|++++|.+.......+..+++|+.|++++|.++. +..+++|+.+.+++|.++...
T Consensus 341 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~ 415 (844)
T 3j0a_A 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLEN 415 (844)
T ss_dssp CEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-----CSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCS
T ss_pred CEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-----ccCCCCcchhccCCCCcccccccccccceeecccCcccc
Confidence 666666665554444445555666666666655442 112344444444444333210
Q ss_pred ---HHhhcCCCCCCEEEccCCccChHHHH-HHhcCCCCCeEEecCCCCCh-----hHHHhhhcCCCCceeeccCCCCCCh
Q 010711 365 ---LAALTSLTGLTHLDLFGARITDSGAA-YLRNFKNLRSLEICGGGLTD-----AGVKHIKDLSSLTLLNLSQNCNLTD 435 (503)
Q Consensus 365 ---~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~l~~ 435 (503)
...+..+++|+.|++++|.+...... .+..+++|+.|++++|.+.. ..+..+..+++|+.|++++| .++.
T Consensus 416 l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ 494 (844)
T 3j0a_A 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNS 494 (844)
T ss_dssp STTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTT
T ss_pred CchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC-cccc
Confidence 11122344444444444433321110 11223344444444443321 11122344455555555555 4555
Q ss_pred hhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCC
Q 010711 436 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482 (503)
Q Consensus 436 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 482 (503)
..+..+.++++|+.|++++|+++..++..+. ++|+.|++++|.++
T Consensus 495 ~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~ 539 (844)
T 3j0a_A 495 LPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLL 539 (844)
T ss_dssp CCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCC
T ss_pred cChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCC
Confidence 4444455555555555555555554433332 44555555544443
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-40 Score=332.41 Aligned_cols=415 Identities=20% Similarity=0.190 Sum_probs=301.1
Q ss_pred ceeEEecCCCCCCChhHHHHHHhcCCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEE
Q 010711 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111 (503)
Q Consensus 32 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 111 (503)
.++.+.+..+. +..... .....+++|++|+++++.+++..+..|.++++|++|++++| .+....+..|+.+++|++|
T Consensus 29 ~l~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 29 STKNLDLSFNP-LRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SCCEEECCSCC-CCEECT-TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEE
T ss_pred cccEEEccCCc-cCccCh-hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCccccccc
Confidence 35666665442 211111 12235788888888888888766677888888888888886 5666666778888888888
Q ss_pred EcCCCccccHHHHHHHhCCCCCcEEeccCccccc-CccccccCCccccEeeccCCcCCCccccccccCCCCC----CEEE
Q 010711 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL----KSLQ 186 (503)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L----~~L~ 186 (503)
++++|. +....+..++++++|++|++++|.... ..+..+.++++|++|++++|. +....+..+..+++| +.++
T Consensus 106 ~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~ 183 (570)
T 2z63_A 106 VAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLD 183 (570)
T ss_dssp ECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEE
T ss_pred cccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhcc
Confidence 888876 333333357788888888888865433 346778888888888888754 333333444444444 4555
Q ss_pred eecccCCchhH---------------------------------------------------------------------
Q 010711 187 ISCSKVTDSGI--------------------------------------------------------------------- 197 (503)
Q Consensus 187 l~~~~~~~~~~--------------------------------------------------------------------- 197 (503)
++++.+....+
T Consensus 184 l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 263 (570)
T 2z63_A 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263 (570)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred cCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence 54444332222
Q ss_pred ------------HhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCC
Q 010711 198 ------------AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265 (503)
Q Consensus 198 ------------~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 265 (503)
..+..+++|+.|+++++.+.. .+..+..+ +|++|++++|.+... +. ..+++|+.++++++...
T Consensus 264 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~~l-~~--~~l~~L~~L~l~~n~~~ 338 (570)
T 2z63_A 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFGQF-PT--LKLKSLKRLTFTSNKGG 338 (570)
T ss_dssp EEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCSSC-CB--CBCSSCCEEEEESCBSC
T ss_pred hhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCccccc-Cc--ccccccCEEeCcCCccc
Confidence 223344566666666665443 23334444 667777766666522 11 35678888888877655
Q ss_pred hHHHHHhhCCCCCCEEEccCCCCChhH--HHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHH-H
Q 010711 266 DECLVHLKGLTNLESLNLDSCGIGDEG--LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-R 342 (503)
Q Consensus 266 ~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~ 342 (503)
...+. ..+++|+.|++++|.+.... +..+..+++|++|++++|.+...... +..+++|+.|++++|.+....+ .
T Consensus 339 ~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~ 415 (570)
T 2z63_A 339 NAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFS 415 (570)
T ss_dssp CBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSC
T ss_pred ccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchh
Confidence 43222 57899999999999887543 56778899999999999987765444 7889999999999997765433 3
Q ss_pred HHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccCh-HHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCC
Q 010711 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421 (503)
Q Consensus 343 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 421 (503)
.+..+++|++|++++|.+....+..+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+++..+..+..+++
T Consensus 416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 495 (570)
T 2z63_A 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495 (570)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence 56789999999999999988777788899999999999998873 34567788999999999999999988888999999
Q ss_pred CceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchh
Q 010711 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460 (503)
Q Consensus 422 L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~ 460 (503)
|+.|++++| .++..++..+.++++|+.|++++|++...
T Consensus 496 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 496 LQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 999999999 88888888899999999999999987753
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.3e-38 Score=313.62 Aligned_cols=429 Identities=20% Similarity=0.150 Sum_probs=283.0
Q ss_pred eeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcEEec
Q 010711 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138 (503)
Q Consensus 59 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 138 (503)
....+.+++.++ ..|..+ .++|++|++++| .+....+..|..+++|++|++++|. +....+.+|.++++|++|++
T Consensus 7 ~~~c~~~~~~l~-~ip~~~--~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 7 SGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp TSEEECTTSCCS-SCCSCC--CTTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEC
T ss_pred CceEECCCCccc-cccccC--CCCccEEECcCC-ccCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEEC
Confidence 334566666665 334433 379999999997 5776667789999999999999997 56666788999999999999
Q ss_pred cCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeeccc-CCchhHHhhhcCCCCCEEEcCCCCCc
Q 010711 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCPVT 217 (503)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~ 217 (503)
++|......+..++++++|++|++++|.......+..+..+++|++|+++++. +.......+..+++|+.|++++|.+.
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 99765444455689999999999999764432345678899999999999987 45444467899999999999999988
Q ss_pred HHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHH---HHHhhCCCCCCEEEccCCCCChhHHH
Q 010711 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC---LVHLKGLTNLESLNLDSCGIGDEGLV 294 (503)
Q Consensus 218 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~ 294 (503)
...+..+..+++|++|+++.+.+.......+..+++|+.|++++|.+.+.. ......+++|+.|++.++.+.+..+.
T Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 241 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241 (549)
T ss_dssp EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH
T ss_pred ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHH
Confidence 776778889999999999999887654444567899999999999877531 11223568899999998877665544
Q ss_pred HH----hcCCCCCEEecCCCccChhh-----------------------------------HHHhhCCCCCCeeeccCCC
Q 010711 295 NL----TGLCNLKCLELSDTQVGSSG-----------------------------------LRHLSGLTNLESINLSFTG 335 (503)
Q Consensus 295 ~l----~~~~~L~~L~l~~~~~~~~~-----------------------------------~~~~~~~~~L~~L~l~~~~ 335 (503)
.+ ..+++|+.+++.++.+.... .......++|+.+++++|.
T Consensus 242 ~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~ 321 (549)
T 2z81_A 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321 (549)
T ss_dssp HHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC
T ss_pred HHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc
Confidence 43 23445555555444321100 0001112344455555444
Q ss_pred CChHHHHHHhCCCCCCEeecCCCCCCHhHHHh---hcCCCCCCEEEccCCccChHHH--HHHhcCCCCCeEEecCCCCCh
Q 010711 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAA---LTSLTGLTHLDLFGARITDSGA--AYLRNFKNLRSLEICGGGLTD 410 (503)
Q Consensus 336 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~ 410 (503)
+.......+..+++|++|++++|.+++..+.. ++.+++|+.|++++|.++..+. ..+..+++|++|++++|.++.
T Consensus 322 l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 401 (549)
T 2z81_A 322 VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP 401 (549)
T ss_dssp CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC
T ss_pred cccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc
Confidence 44322222234555555555555555433221 3344555555555555544332 234455555555555555443
Q ss_pred hHHHhhhcCC---------------------CCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCc
Q 010711 411 AGVKHIKDLS---------------------SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 469 (503)
Q Consensus 411 ~~~~~~~~~~---------------------~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~ 469 (503)
.+..+..++ +|+.|++++| .++.. ...+++|+.|++++|+++.++. ...++
T Consensus 402 -lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N-~l~~~----~~~l~~L~~L~Ls~N~l~~ip~--~~~l~ 473 (549)
T 2z81_A 402 -MPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNN-NLDSF----SLFLPRLQELYISRNKLKTLPD--ASLFP 473 (549)
T ss_dssp -CCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSS-CCSCC----CCCCTTCCEEECCSSCCSSCCC--GGGCT
T ss_pred -CChhhcccccccEEECCCCCcccccchhcCCceEEECCCC-Chhhh----cccCChhcEEECCCCccCcCCC--cccCc
Confidence 222333334 4555555555 44442 2467888999999988886533 35688
Q ss_pred ccceEEeccCCCCHHHHHHHHhcCCCCcccccC
Q 010711 470 NLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 502 (503)
Q Consensus 470 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~ 502 (503)
+|+.|++++|.++......+. .+++|+.+++
T Consensus 474 ~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~l 504 (549)
T 2z81_A 474 VLLVMKISRNQLKSVPDGIFD--RLTSLQKIWL 504 (549)
T ss_dssp TCCEEECCSSCCCCCCTTGGG--GCTTCCEEEC
T ss_pred cCCEEecCCCccCCcCHHHHh--cCcccCEEEe
Confidence 899999999988865544454 7788887765
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=307.30 Aligned_cols=410 Identities=15% Similarity=0.126 Sum_probs=301.8
Q ss_pred CCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcEE
Q 010711 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (503)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (503)
++++.|+++++.+++..+..|.++++|++|++++| .+....+..|+.+++|++|++++|.. . .+|.. .+++|++|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l-~-~lp~~--~l~~L~~L 95 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKL-V-KISCH--PTVNLKHL 95 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSCC-C-EEECC--CCCCCSEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCce-e-ecCcc--ccCCccEE
Confidence 67888888888888766677888888888888886 56666677888888888888888863 3 23433 78888888
Q ss_pred eccCccccc-CccccccCCccccEeeccCCcCCCccccccccCCCCC--CEEEeecccC--CchhHHhhhc---------
Q 010711 137 DLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL--KSLQISCSKV--TDSGIAYLKG--------- 202 (503)
Q Consensus 137 ~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~l~~--------- 202 (503)
++++|.... ..+..++++++|++|+++++. +.. ..+..+++| ++|+++++.+ ....+..+..
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~ 171 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred eccCCccccccchhhhccCCcceEEEecCcc-cch---hhccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence 888865443 345678888888888888755 332 345556666 8888888776 3333333333
Q ss_pred -----------------CCCCCEEEcCCCC-------CcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhh---cCCCCC
Q 010711 203 -----------------LQKLTLLNLEGCP-------VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS---KIGSLK 255 (503)
Q Consensus 203 -----------------~~~L~~L~l~~~~-------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~---~~~~L~ 255 (503)
+++|+.+++++|. +.... ..+..+++|+.|++.++.+.......+. ..++|+
T Consensus 172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL-AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH-HGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred eccCcchhhhhhhhhhcccceeeccccccccccccceeecch-hhhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 5566666666654 33322 3566777888888877766553332221 245788
Q ss_pred EEEccCCCCChHHHHHh-----hCCCCCCEEEccCCCCChhHHHHHh---cCCCCCEEecCCCccChhhHHHhhCCCCCC
Q 010711 256 VLNLGFNEITDECLVHL-----KGLTNLESLNLDSCGIGDEGLVNLT---GLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327 (503)
Q Consensus 256 ~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 327 (503)
.|++++|.+.+..+..+ ..+++|+.++++++.+ ..+...+. ...+|+.|+++++.+.... ....+++|+
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~ 327 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFL 327 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCC
T ss_pred EEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCccc
Confidence 88888776664444444 6677777888877765 22212222 2367899999888775532 125789999
Q ss_pred eeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCH--hHHHhhcCCCCCCEEEccCCccCh-HHHHHHhcCCCCCeEEec
Q 010711 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD--TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEIC 404 (503)
Q Consensus 328 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~ 404 (503)
.|++++|.+++..+..+..+++|++|++++|.+++ ..+..+..+++|+.|++++|.+.. .+...+..+++|++|+++
T Consensus 328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407 (520)
T ss_dssp EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECC
T ss_pred EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECc
Confidence 99999999988667778899999999999999997 344678899999999999999987 544457788999999999
Q ss_pred CCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCCH
Q 010711 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 483 (503)
Q Consensus 405 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 483 (503)
+|.+++..+..+. ++|+.|++++| .++. .+..+..+++|+.|++++|+++.++...+..+++|++|++++|+++-
T Consensus 408 ~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 408 SNILTDTIFRCLP--PRIKVLDLHSN-KIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp SSCCCGGGGGSCC--TTCCEEECCSS-CCCC-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCCcchhhhhc--ccCCEEECCCC-cccc-cchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence 9999876655543 79999999999 7885 44455599999999999999998766668889999999999998874
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.9e-39 Score=323.37 Aligned_cols=417 Identities=18% Similarity=0.181 Sum_probs=328.9
Q ss_pred CCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCee------cC------hh--------------------hHHHh--
Q 010711 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ------IS------DG--------------------GLEHL-- 102 (503)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~------~~--------------------~~~~~-- 102 (503)
.+++.|+++++++.+..+..++++++|++|++++|.. +. .. .+..+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 6899999999999999999999999999999999732 00 00 00000
Q ss_pred -----------------hCCCCCCEEEcCC-CccccHHHHHHHhCCCCCcEEeccCcccccC------------------
Q 010711 103 -----------------RGLSNLTSLSFRR-NNAITAQGMKAFAGLINLVKLDLERCTRIHG------------------ 146 (503)
Q Consensus 103 -----------------~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~------------------ 146 (503)
.....++.+.+.. +..+++ +|..++++++|++|++++|. +..
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCc-cccccccccccccccchhccc
Confidence 0111233333332 223455 78889999999999999976 544
Q ss_pred cccccc--CCccccEeeccCCcCCCccccccccCCCCCCEEEeeccc-CCc-hhHHhhhcC------CCCCEEEcCCCCC
Q 010711 147 GLVNLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTD-SGIAYLKGL------QKLTLLNLEGCPV 216 (503)
Q Consensus 147 ~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~l~~~------~~L~~L~l~~~~~ 216 (503)
.|..+. ++++|++|++++|. +....+..+.++++|++|+++++. +++ ..+..+..+ ++|+.|++++|.+
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCP-NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCT-TCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred CchhhhhcccCCCCEEEecCCc-CCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 788888 99999999999965 444566889999999999999998 887 677777665 9999999999998
Q ss_pred cHHHHH--HhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCC-CCEEEccCCCCChhHH
Q 010711 217 TAACLD--SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN-LESLNLDSCGIGDEGL 293 (503)
Q Consensus 217 ~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~ 293 (503)
. ..+. .+..+++|++|++++|.+....+ .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+.. .+
T Consensus 318 ~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~-lp 393 (636)
T 4eco_A 318 K-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY-IP 393 (636)
T ss_dssp S-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS-CC
T ss_pred C-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcc-cc
Confidence 8 4455 78999999999999999985566 7888899999999999877 55556778888 9999999998873 34
Q ss_pred HHHhcC--CCCCEEecCCCccChhhHHHhh-------CCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhH
Q 010711 294 VNLTGL--CNLKCLELSDTQVGSSGLRHLS-------GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364 (503)
Q Consensus 294 ~~l~~~--~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 364 (503)
..+... ++|++|++++|.+....+..+. .+++|+.|++++|.++......+..+++|++|++++|.++..+
T Consensus 394 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~ 473 (636)
T 4eco_A 394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP 473 (636)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCC
T ss_pred hhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcC
Confidence 444443 4899999999998876666666 6779999999999988765566778999999999999998544
Q ss_pred HHhhcCC-------CCCCEEEccCCccChHHHHHHh--cCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCC----
Q 010711 365 LAALTSL-------TGLTHLDLFGARITDSGAAYLR--NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC---- 431 (503)
Q Consensus 365 ~~~~~~~-------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~---- 431 (503)
...+... ++|+.|++++|.++.. +..+. .+++|+.|++++|.+++ .+..+..+++|+.|++++|.
T Consensus 474 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~ 551 (636)
T 4eco_A 474 KNSLKDENENFKNTYLLTSIDLRFNKLTKL-SDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQG 551 (636)
T ss_dssp SSSSEETTEECTTGGGCCEEECCSSCCCBC-CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTC
T ss_pred HHHhccccccccccCCccEEECcCCcCCcc-ChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCccccc
Confidence 3334333 3999999999999855 44554 89999999999999988 56778889999999995431
Q ss_pred -CCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCCHHH
Q 010711 432 -NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 485 (503)
Q Consensus 432 -~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 485 (503)
.+....+..+.++++|+.|++++|.+..+ |..+. ++|+.|++++|+++...
T Consensus 552 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~i-p~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 552 NRTLREWPEGITLCPSLTQLQIGSNDIRKV-NEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCCCBC-CSCCC--TTCCEEECCSCTTCEEE
T ss_pred CcccccChHHHhcCCCCCEEECCCCcCCcc-CHhHh--CcCCEEECcCCCCcccc
Confidence 56666778899999999999999999665 44433 89999999999877543
No 16
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.8e-39 Score=335.38 Aligned_cols=420 Identities=20% Similarity=0.160 Sum_probs=271.5
Q ss_pred cCCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHH--HhhCCCCCCEEEcCCCccccHHHHHHHhCCCC
Q 010711 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE--HLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132 (503)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 132 (503)
.+++|+.|+++++.+.+..+..|.++++|++|++++| .+....+. .++.+++|++|++++|.......+..|+++++
T Consensus 71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~ 149 (844)
T 3j0a_A 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS 149 (844)
T ss_dssp SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSS
T ss_pred CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCC
Confidence 4555666666666665555555666666666666655 33322122 25556666666666654322112234556666
Q ss_pred CcEEeccCcccccCccccccCC--ccccEeeccCCcCCCccccccccCCCC------CCEEEeecccCCchhHHhh----
Q 010711 133 LVKLDLERCTRIHGGLVNLKGL--MKLESLNIKWCNCITDSDMKPLSGLTN------LKSLQISCSKVTDSGIAYL---- 200 (503)
Q Consensus 133 L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~l~~------L~~L~l~~~~~~~~~~~~l---- 200 (503)
|++|++++|......+..+..+ ++|+.|++++|. +....+..+..+++ |+.|+++++.+....+..+
T Consensus 150 L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l 228 (844)
T 3j0a_A 150 LKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS-LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI 228 (844)
T ss_dssp CCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSB-SCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTS
T ss_pred CCEEECCCCcCCeeCHHHcccccCCccceEECCCCc-cccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhc
Confidence 6666666543333233333333 444444444432 12122222222222 7777776664432222111
Q ss_pred --------------------------------hc--CCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhH
Q 010711 201 --------------------------------KG--LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246 (503)
Q Consensus 201 --------------------------------~~--~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 246 (503)
.. .++|+.|++++|.+....+..+..+++|+.|++++|.+....+.
T Consensus 229 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 308 (844)
T 3j0a_A 229 SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE 308 (844)
T ss_dssp CSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT
T ss_pred CcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH
Confidence 11 25678888888877665555667778888888888888776667
Q ss_pred hhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhH---------
Q 010711 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL--------- 317 (503)
Q Consensus 247 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--------- 317 (503)
.+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.....
T Consensus 309 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l 388 (844)
T 3j0a_A 309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFL 388 (844)
T ss_dssp TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEE
T ss_pred HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhcc
Confidence 77778888888888887765555566777888888888887766555566677788888887776553211
Q ss_pred -----HH-hhCCCCCCeeeccCCCCChH-HHHHHhCCCCCCEeecCCCCCCHhHHH-hhcCCCCCCEEEccCCccChH--
Q 010711 318 -----RH-LSGLTNLESINLSFTGISDG-SLRKLAGLSSLKSLNLDARQITDTGLA-ALTSLTGLTHLDLFGARITDS-- 387 (503)
Q Consensus 318 -----~~-~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-- 387 (503)
.. -....+++.+++++|.+... ....+..+++|++|++++|.++..... .+..+++|+.|++++|.+...
T Consensus 389 ~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~ 468 (844)
T 3j0a_A 389 SGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468 (844)
T ss_dssp ESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCC
T ss_pred CCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccc
Confidence 00 00123445555555555432 233456899999999999998864332 345689999999999988632
Q ss_pred ---HHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhh
Q 010711 388 ---GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464 (503)
Q Consensus 388 ---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 464 (503)
.+..+..+++|+.|++++|.+++..+..+..+++|+.|++++| .++..++..+. ++|+.|++++|.++...+..
T Consensus 469 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~ 545 (844)
T 3j0a_A 469 TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLP--ANLEILDISRNQLLAPNPDV 545 (844)
T ss_dssp SCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC
T ss_pred cccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCC-CCCccChhhhh--ccccEEECCCCcCCCCChhH
Confidence 2345678899999999999999888888899999999999999 88876665554 89999999999999877754
Q ss_pred ccCCcccceEEeccCCCC
Q 010711 465 LKPLKNLRSLTLESCKVT 482 (503)
Q Consensus 465 l~~~~~L~~L~l~~~~~~ 482 (503)
+++|+.|++++|++.
T Consensus 546 ---~~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 546 ---FVSLSVLDITHNKFI 560 (844)
T ss_dssp ---CSSCCEEEEEEECCC
T ss_pred ---hCCcCEEEecCCCcc
Confidence 458999999998764
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.4e-38 Score=322.31 Aligned_cols=414 Identities=17% Similarity=0.179 Sum_probs=319.2
Q ss_pred CCeeEEEccCCCCChhhhhhccCCCCCCEEec-CCCeecChh--------------------------------------
Q 010711 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF-NFCIQISDG-------------------------------------- 97 (503)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~-------------------------------------- 97 (503)
.+++.|+|+++++.+..+..++++++|++|+| ++| .+...
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N-~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHS-ETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTT-HHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccc-cccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 67999999999999999999999999999999 544 32111
Q ss_pred --hHHHhh-----------CCCCCCEEEcCC--CccccHHHHHHHhCCCCCcEEeccCcccccC----------------
Q 010711 98 --GLEHLR-----------GLSNLTSLSFRR--NNAITAQGMKAFAGLINLVKLDLERCTRIHG---------------- 146 (503)
Q Consensus 98 --~~~~~~-----------~~~~L~~L~l~~--~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---------------- 146 (503)
....+. ...+++.+.+.. |. +.+ +|..++++++|++|++++|. +..
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~-L~~-IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~ 478 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR-ITF-ISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAK 478 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCE-EEE-ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCc-ccc-hhHHHhcCCCCCEEECcCCc-CCCCccccccccccccccc
Confidence 011111 112233333333 33 444 68889999999999999976 444
Q ss_pred --cccccc--CCccccEeeccCCcCCCccccccccCCCCCCEEEeeccc-CCc-hhHHhhhcC-------CCCCEEEcCC
Q 010711 147 --GLVNLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTD-SGIAYLKGL-------QKLTLLNLEG 213 (503)
Q Consensus 147 --~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~l~~~-------~~L~~L~l~~ 213 (503)
.|..++ ++++|++|++++|.. ....+..+..+++|+.|+++++. +++ ..+..+..+ ++|+.|++++
T Consensus 479 g~iP~~l~f~~L~~L~~L~Ls~N~l-~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~ 557 (876)
T 4ecn_A 479 QYENEELSWSNLKDLTDVELYNCPN-MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557 (876)
T ss_dssp HHTTSCCCGGGCTTCCEEEEESCTT-CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred ccCChhhhhccCCCCCEEECcCCCC-CccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC
Confidence 677777 999999999998653 44566889999999999999997 876 566655554 4999999999
Q ss_pred CCCcHHHHH--HhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCC-CCEEEccCCCCCh
Q 010711 214 CPVTAACLD--SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN-LESLNLDSCGIGD 290 (503)
Q Consensus 214 ~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~ 290 (503)
|.+. ..+. .+..+++|+.|++++|.+. ..+ .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+..
T Consensus 558 N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~ 633 (876)
T 4ecn_A 558 NNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY 633 (876)
T ss_dssp SCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCS
T ss_pred CcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCc
Confidence 9988 4455 7899999999999999998 445 7888999999999999888 55666777888 9999999998873
Q ss_pred hHHHHHhcCC--CCCEEecCCCccChhhHH---Hhh--CCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHh
Q 010711 291 EGLVNLTGLC--NLKCLELSDTQVGSSGLR---HLS--GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363 (503)
Q Consensus 291 ~~~~~l~~~~--~L~~L~l~~~~~~~~~~~---~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 363 (503)
.+..+...+ +|+.|++++|.+....+. .+. .+++|+.|++++|.+.......+..+++|+.|++++|.+...
T Consensus 634 -lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~i 712 (876)
T 4ecn_A 634 -IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSI 712 (876)
T ss_dssp -CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCC
T ss_pred -CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCcc
Confidence 344444443 499999999988664321 112 345899999999998866556667899999999999998854
Q ss_pred HHHhhcC-------CCCCCEEEccCCccChHHHHHHh--cCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCC---
Q 010711 364 GLAALTS-------LTGLTHLDLFGARITDSGAAYLR--NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC--- 431 (503)
Q Consensus 364 ~~~~~~~-------~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--- 431 (503)
+...+.. +++|+.|++++|.+... +..+. .+++|+.|++++|.+++ .+..+..+++|+.|++++|.
T Consensus 713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l-p~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls 790 (876)
T 4ecn_A 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLTSL-SDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAE 790 (876)
T ss_dssp CTTSSSCTTSCCTTGGGCCEEECCSSCCCCC-CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTT
T ss_pred ChHHhccccccccccCCccEEECCCCCCccc-hHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcc
Confidence 4333332 23899999999999854 44554 89999999999999988 46678889999999998732
Q ss_pred --CCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCCHHH
Q 010711 432 --NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 485 (503)
Q Consensus 432 --~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 485 (503)
.+....|..+.++++|+.|+|++|.+..+ |..+. ++|+.|+|++|++....
T Consensus 791 ~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~I-p~~l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 791 GNRILRQWPTGITTCPSLIQLQIGSNDIRKV-DEKLT--PQLYILDIADNPNISID 843 (876)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCCCBC-CSCCC--SSSCEEECCSCTTCEEE
T ss_pred cccccccChHHHhcCCCCCEEECCCCCCCcc-CHhhc--CCCCEEECCCCCCCccC
Confidence 56666778899999999999999999655 44433 69999999999886543
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.1e-37 Score=307.44 Aligned_cols=408 Identities=16% Similarity=0.182 Sum_probs=320.7
Q ss_pred CCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCcc------ccH-----HHH-------------------------
Q 010711 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA------ITA-----QGM------------------------- 124 (503)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~~-----~~~------------------------- 124 (503)
.+++.|+|+++ .+....+..++++++|++|++++|.. ... ..|
T Consensus 81 ~~V~~L~L~~~-~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGF-GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTS-CCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCc-ccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 57999999997 56666678899999999999999853 000 000
Q ss_pred ----HHH-----------hCCCCCcEEeccC-cccccCccccccCCccccEeeccCCcCCCcc-----------------
Q 010711 125 ----KAF-----------AGLINLVKLDLER-CTRIHGGLVNLKGLMKLESLNIKWCNCITDS----------------- 171 (503)
Q Consensus 125 ----~~~-----------~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~----------------- 171 (503)
..+ .....++.+.+.. +..+...|..++++++|++|++++|. +...
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhccc
Confidence 000 0011222222222 22444577889999999999999976 5553
Q ss_pred cccccc--CCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCC-CcH-HHHHHhhCC------CCCCEEEccCCCCC
Q 010711 172 DMKPLS--GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTA-ACLDSLSAL------GSLFYLNLNRCQLS 241 (503)
Q Consensus 172 ~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~l~~l------~~L~~L~l~~~~~~ 241 (503)
.+..++ ++++|++|+++++.+....+..+.++++|+.|++++|. +.. ..+..+..+ ++|++|++++|.+.
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 667777 99999999999999888888889999999999999998 887 677777765 99999999999998
Q ss_pred hhhhH--hhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCC-CCEEecCCCccChhhHH
Q 010711 242 DDGCE--KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN-LKCLELSDTQVGSSGLR 318 (503)
Q Consensus 242 ~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~ 318 (503)
..+. .+..+++|+.|++++|.+.+..+ .+..+++|+.|++++|.+. ..+..+..+++ |++|++++|.+.. .+.
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~ 394 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY-IPN 394 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS-CCS
T ss_pred -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcc-cch
Confidence 5666 88999999999999999885555 7788899999999999776 44456778888 9999999999874 344
Q ss_pred HhhCC--CCCCeeeccCCCCChHHHHHHh-------CCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHH
Q 010711 319 HLSGL--TNLESINLSFTGISDGSLRKLA-------GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389 (503)
Q Consensus 319 ~~~~~--~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 389 (503)
.+... ++|+.|++++|.+....+..+. .+++|++|++++|.++..+...+..+++|+.|++++|.+...+.
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~ 474 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK 474 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCS
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCH
Confidence 44443 4899999999999876666666 67899999999999997666677789999999999999986554
Q ss_pred HHHhcC-------CCCCeEEecCCCCChhHHHhhh--cCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecc------c
Q 010711 390 AYLRNF-------KNLRSLEICGGGLTDAGVKHIK--DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS------N 454 (503)
Q Consensus 390 ~~~~~~-------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~------~ 454 (503)
..+... ++|+.|++++|.++. .+..+. .+++|+.|++++| .++. .|..+.++++|+.|+++ +
T Consensus 475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N-~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~ 551 (636)
T 4eco_A 475 NSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYN-SFSK-FPTQPLNSSTLKGFGIRNQRDAQG 551 (636)
T ss_dssp SSSEETTEECTTGGGCCEEECCSSCCCB-CCGGGSTTTCTTCCEEECCSS-CCSS-CCCGGGGCSSCCEEECCSCBCTTC
T ss_pred HHhccccccccccCCccEEECcCCcCCc-cChhhhhccCCCcCEEECCCC-CCCC-cChhhhcCCCCCEEECCCCccccc
Confidence 444333 299999999999995 445555 8999999999999 7887 56678899999999994 5
Q ss_pred CccchhhHhhccCCcccceEEeccCCCCHHHHHHHHhcCCCCcccccC
Q 010711 455 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 502 (503)
Q Consensus 455 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~ 502 (503)
|.+....|..+..+++|++|++++|.++... ..-.++|+.|++
T Consensus 552 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip-----~~~~~~L~~L~L 594 (636)
T 4eco_A 552 NRTLREWPEGITLCPSLTQLQIGSNDIRKVN-----EKITPNISVLDI 594 (636)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCCCBCC-----SCCCTTCCEEEC
T ss_pred CcccccChHHHhcCCCCCEEECCCCcCCccC-----HhHhCcCCEEEC
Confidence 6777777888899999999999999985432 123367777764
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.5e-36 Score=307.52 Aligned_cols=406 Identities=16% Similarity=0.145 Sum_probs=312.2
Q ss_pred CCCCEEecCCCeecChhhHHHhhCCCCCCEEEc-CCCccccHH-------------------------------------
Q 010711 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF-RRNNAITAQ------------------------------------- 122 (503)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~------------------------------------- 122 (503)
.++..|+|+++ .+....+..++++++|++|++ ++|. +.+.
T Consensus 323 ~~V~~L~Ls~~-~L~G~ip~~l~~L~~L~~LdLss~N~-lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~ 400 (876)
T 4ecn_A 323 GRVTGLSLAGF-GAKGRVPDAIGQLTELKVLSFGTHSE-TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400 (876)
T ss_dssp SCEEEEECTTT-CCEEEECGGGGGCTTCCEEESCCTTH-HHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred CCEEEEECccC-CCCCcCchHHhccccceEeeeccccc-ccccccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence 57999999997 666666788999999999999 5553 2111
Q ss_pred ---HHHHHh-----------CCCCCcEEeccC-cccccCccccccCCccccEeeccCCcCCCc-----------------
Q 010711 123 ---GMKAFA-----------GLINLVKLDLER-CTRIHGGLVNLKGLMKLESLNIKWCNCITD----------------- 170 (503)
Q Consensus 123 ---~~~~~~-----------~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----------------- 170 (503)
.+..+. ....++.+.+.. +..+...|..+.++++|++|++++|. +..
T Consensus 401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g 479 (876)
T 4ecn_A 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQ 479 (876)
T ss_dssp CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHH
T ss_pred hHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccc
Confidence 111111 111222222322 12333467789999999999999966 444
Q ss_pred ccccccc--CCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCC-CcH-HHHHHhhCC-------CCCCEEEccCCC
Q 010711 171 SDMKPLS--GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTA-ACLDSLSAL-------GSLFYLNLNRCQ 239 (503)
Q Consensus 171 ~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~l~~l-------~~L~~L~l~~~~ 239 (503)
..+..++ .+++|++|++++|.+....+..+.++++|+.|++++|. +.. ..|..+..+ ++|+.|++++|.
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 2566766 99999999999998888888889999999999999998 876 667666554 499999999999
Q ss_pred CChhhhH--hhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCC-CCEEecCCCccChhh
Q 010711 240 LSDDGCE--KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN-LKCLELSDTQVGSSG 316 (503)
Q Consensus 240 ~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~ 316 (503)
+. ..+. .+..+++|+.|++++|.+. ..+ .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+.. .
T Consensus 560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~-l 634 (876)
T 4ecn_A 560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-I 634 (876)
T ss_dssp CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCS-C
T ss_pred CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCc-C
Confidence 98 5666 8999999999999999888 444 7788999999999999887 44556778888 9999999998873 3
Q ss_pred HHHhhCCC--CCCeeeccCCCCChHHHH---HHh--CCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHH
Q 010711 317 LRHLSGLT--NLESINLSFTGISDGSLR---KLA--GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389 (503)
Q Consensus 317 ~~~~~~~~--~L~~L~l~~~~~~~~~~~---~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 389 (503)
+..+...+ +|+.|++++|.+....+. .+. .+++|+.|++++|.++..+...+..+++|+.|++++|.+...+.
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~ 714 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE 714 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCT
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccCh
Confidence 34444443 499999999988753321 111 34589999999999997766667789999999999999886544
Q ss_pred HHHh-------cCCCCCeEEecCCCCChhHHHhhh--cCCCCceeeccCCCCCChhhHHHHhcCCCCcEEeccc------
Q 010711 390 AYLR-------NFKNLRSLEICGGGLTDAGVKHIK--DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN------ 454 (503)
Q Consensus 390 ~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~------ 454 (503)
..+. ++++|+.|++++|.++. .+..+. .+++|+.|++++| .++. .+..+.++++|+.|+|++
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp~~l~~~~l~~L~~L~Ls~N-~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~ 791 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYN-CFSS-FPTQPLNSSQLKAFGIRHQRDAEG 791 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCCC-CCGGGSTTTCTTCCEEECCSS-CCSS-CCCGGGGCTTCCEEECCCCBCTTC
T ss_pred HHhccccccccccCCccEEECCCCCCcc-chHHhhhccCCCcCEEEeCCC-CCCc-cchhhhcCCCCCEEECCCCCCccc
Confidence 4333 23489999999999985 455665 8999999999999 7887 466788999999999976
Q ss_pred CccchhhHhhccCCcccceEEeccCCCCHHHHHHHHhcCCCCcccccC
Q 010711 455 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 502 (503)
Q Consensus 455 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~ 502 (503)
|.+....|..+..+++|+.|++++|.++.. ...-.++|+.|++
T Consensus 792 N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~I-----p~~l~~~L~~LdL 834 (876)
T 4ecn_A 792 NRILRQWPTGITTCPSLIQLQIGSNDIRKV-----DEKLTPQLYILDI 834 (876)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCCCBC-----CSCCCSSSCEEEC
T ss_pred ccccccChHHHhcCCCCCEEECCCCCCCcc-----CHhhcCCCCEEEC
Confidence 677777788889999999999999998432 2123467777664
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.2e-35 Score=288.01 Aligned_cols=361 Identities=17% Similarity=0.203 Sum_probs=263.8
Q ss_pred CCCCEEEcCCCccccHHHHHHHhCCCCCcEEeccCcccccC-ccccccCCccccEeeccCCcCCCccccccccCCCCCCE
Q 010711 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184 (503)
Q Consensus 106 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 184 (503)
++|++|++++|. +....|..+.++++|++|++++|..... .+..+.++++|++|++++|. +....+..+..+++|++
T Consensus 30 ~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTTTTCTTCCE
T ss_pred CccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhccCcccCCE
Confidence 689999999986 4566677888999999999998754323 34568888999999998855 55556677888899999
Q ss_pred EEeecccCCchhHHh--hhcCCCCCEEEcCCCCCcHHHHHH-hhCCCCCCEEEccCCCCChhhhHhhhcC--CCCCEEEc
Q 010711 185 LQISCSKVTDSGIAY--LKGLQKLTLLNLEGCPVTAACLDS-LSALGSLFYLNLNRCQLSDDGCEKFSKI--GSLKVLNL 259 (503)
Q Consensus 185 L~l~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l 259 (503)
|+++++.+.+..+.. +..+++|++|++++|.+....+.. +..+++|++|++++|.+....+..+..+ .+++.+++
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 999988887655554 788889999999998877654444 6788899999999888877666666554 67888888
Q ss_pred cCCCCChHHHH--------HhhCCCCCCEEEccCCCCChhHHHHHhcC---CCCCEEecCCCccChhhHHHhhCCCCCCe
Q 010711 260 GFNEITDECLV--------HLKGLTNLESLNLDSCGIGDEGLVNLTGL---CNLKCLELSDTQVGSSGLRHLSGLTNLES 328 (503)
Q Consensus 260 ~~~~~~~~~~~--------~l~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 328 (503)
+++.+...... .+..+++|+.|++++|.+.+..+..+... ++++.++++++........ ...++.+.
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~- 265 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-HTNFKDPD- 265 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-CCSSCCCC-
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-hhhhccCc-
Confidence 88776542221 12345678888888888877666665443 6788888877654322100 00001000
Q ss_pred eeccCCCCChHHHHHHh--CCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCC
Q 010711 329 INLSFTGISDGSLRKLA--GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406 (503)
Q Consensus 329 L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 406 (503)
...+. ..++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus 266 ------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 266 ------------NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333 (455)
T ss_dssp ------------TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ------------ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC
Confidence 00111 2467888888888887766677778888888888888887776777777888888888888
Q ss_pred CCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCCH
Q 010711 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 483 (503)
Q Consensus 407 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 483 (503)
.+++..+..+..+++|+.|++++| .++...+..+.++++|+.|++++|+++..++..+..+++|++|++++|+++.
T Consensus 334 ~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 334 FLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CCCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccCCcChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 887776777788888888888888 7777777778888888888888888888766677788888888888887654
No 21
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1e-33 Score=275.09 Aligned_cols=395 Identities=24% Similarity=0.276 Sum_probs=265.9
Q ss_pred CCCCEEecCCCeecChhhHHH-hhCCCCCCEEEcCCCccccH----HHHHHHhCCCCCcEEeccCcccccCccccc-cCC
Q 010711 81 SNLQSLDFNFCIQISDGGLEH-LRGLSNLTSLSFRRNNAITA----QGMKAFAGLINLVKLDLERCTRIHGGLVNL-KGL 154 (503)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l 154 (503)
++|++|+++++ .+....... +..+++|++|++++|. +.. .++..+..+++|++|++++|......+..+ ..+
T Consensus 3 ~~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred ccceehhhhhc-ccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 56788888876 565554444 6778888888888886 343 345667777888888887754322222221 112
Q ss_pred ccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCc----hhHHhhhcCCCCCEEEcCCCCCcHHHHHHhh-----
Q 010711 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD----SGIAYLKGLQKLTLLNLEGCPVTAACLDSLS----- 225 (503)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~----- 225 (503)
+. ..++|++|+++++.+.. ..+..+..+++|+.|++++|.+.......+.
T Consensus 81 ~~---------------------~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 139 (461)
T 1z7x_W 81 QT---------------------PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD 139 (461)
T ss_dssp CS---------------------TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred hh---------------------CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhc
Confidence 20 00135555555554442 2244455566666666666665443333222
Q ss_pred CCCCCCEEEccCCCCChhh----hHhhhcCCCCCEEEccCCCCChHHHHHhh-----CCCCCCEEEccCCCCChh----H
Q 010711 226 ALGSLFYLNLNRCQLSDDG----CEKFSKIGSLKVLNLGFNEITDECLVHLK-----GLTNLESLNLDSCGIGDE----G 292 (503)
Q Consensus 226 ~l~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~----~ 292 (503)
..++|++|++++|.+.... +..+..+++|+.|++++|.+.+.....+. ..++|+.|++++|.++.. .
T Consensus 140 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 219 (461)
T 1z7x_W 140 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 219 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH
T ss_pred CCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHH
Confidence 2346777777777666533 34445567777777777776654443332 356788888888877654 3
Q ss_pred HHHHhcCCCCCEEecCCCccChhhHHH-----hhCCCCCCeeeccCCCCChHH----HHHHhCCCCCCEeecCCCCCCHh
Q 010711 293 LVNLTGLCNLKCLELSDTQVGSSGLRH-----LSGLTNLESINLSFTGISDGS----LRKLAGLSSLKSLNLDARQITDT 363 (503)
Q Consensus 293 ~~~l~~~~~L~~L~l~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~ 363 (503)
+..+..+++|++|++++|.+.+..... +..+++|+.|++++|.++... +..+..+++|++|++++|.+.+.
T Consensus 220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 299 (461)
T 1z7x_W 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred HHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH
Confidence 455667788888888888776654322 235788999999999888753 44566689999999999988876
Q ss_pred HHHhhc-----CCCCCCEEEccCCccChH----HHHHHhcCCCCCeEEecCCCCChhHHHhhhc-----CCCCceeeccC
Q 010711 364 GLAALT-----SLTGLTHLDLFGARITDS----GAAYLRNFKNLRSLEICGGGLTDAGVKHIKD-----LSSLTLLNLSQ 429 (503)
Q Consensus 364 ~~~~~~-----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~ 429 (503)
++..+. ..++|+.|++++|.++.. .+..+..+++|++|++++|.+++.++..+.. .++|+.|++++
T Consensus 300 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 379 (461)
T 1z7x_W 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCC
Confidence 655443 337999999999988865 3556678899999999999998877665543 67999999999
Q ss_pred CCCCCh----hhHHHHhcCCCCcEEecccCccchhhHhhcc-----CCcccceEEeccCCCCHH---HHHHHHhcCCCCc
Q 010711 430 NCNLTD----KTLELISGLTGLVSLNVSNSRITSAGLRHLK-----PLKNLRSLTLESCKVTAN---DIKRLQSRDLPNL 497 (503)
Q Consensus 430 ~~~l~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~~L 497 (503)
| .++. ..+..+..+++|++|++++|+++..+...+. ..++|+.|.+.++.+... .++.+. ...|+|
T Consensus 380 n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~-~~~p~l 457 (461)
T 1z7x_W 380 C-DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE-KDKPSL 457 (461)
T ss_dssp S-CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHH-HHCTTS
T ss_pred C-CCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHh-ccCCCc
Confidence 9 8886 5667788899999999999999987654442 245789999988877654 344444 567887
Q ss_pred ccc
Q 010711 498 VSF 500 (503)
Q Consensus 498 ~~l 500 (503)
+.+
T Consensus 458 ~i~ 460 (461)
T 1z7x_W 458 RVI 460 (461)
T ss_dssp EEE
T ss_pred Eee
Confidence 754
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.4e-35 Score=288.25 Aligned_cols=422 Identities=18% Similarity=0.132 Sum_probs=303.7
Q ss_pred eEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcEEecc
Q 010711 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139 (503)
Q Consensus 60 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 139 (503)
+++++++++++ ..+..+. ++|++|++++| .+....+..|..+++|++|++++|. +....|..|.++++|++|+++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQN-YISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECC
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCC-cccccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecC
Confidence 67999999998 4555554 89999999997 6777778899999999999999997 566668899999999999999
Q ss_pred CcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCC--CEEEcCCCCC-
Q 010711 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL--TLLNLEGCPV- 216 (503)
Q Consensus 140 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~- 216 (503)
+|. +...+.. .+++|++|++++|.......+..++.+++|++|+++++.+.. ..+..+++| +.|++++|.+
T Consensus 78 ~N~-l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 78 HNK-LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp SSC-CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTT
T ss_pred CCc-eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccc
Confidence 964 4455544 799999999999764443456789999999999999999886 346667777 9999999987
Q ss_pred -cHHHHHHhhC--------------------------CCCCCEEEccCCC-------CChhhhHhhhcCCCCCEEEccCC
Q 010711 217 -TAACLDSLSA--------------------------LGSLFYLNLNRCQ-------LSDDGCEKFSKIGSLKVLNLGFN 262 (503)
Q Consensus 217 -~~~~~~~l~~--------------------------l~~L~~L~l~~~~-------~~~~~~~~l~~~~~L~~L~l~~~ 262 (503)
....+..+.. +++|+.+++++|. +.... ..+..+++|+.|+++++
T Consensus 152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~ 230 (520)
T 2z7x_B 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL-AKLQTNPKLSNLTLNNI 230 (520)
T ss_dssp TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH-HGGGGCTTCCEEEEEEE
T ss_pred ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecch-hhhccccchhhcccccc
Confidence 4333344443 3444444444443 22111 24455566666666655
Q ss_pred CCChHHHHHh---hCCCCCCEEEccCCCCChhHHHHH-----hcCCCCCEEecCCCccChhhHHHhhC---CCCCCeeec
Q 010711 263 EITDECLVHL---KGLTNLESLNLDSCGIGDEGLVNL-----TGLCNLKCLELSDTQVGSSGLRHLSG---LTNLESINL 331 (503)
Q Consensus 263 ~~~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~l 331 (503)
.+.+.....+ ...++|+.|++++|.+.+..+..+ ..+++|+.+++..+.+ ......+.. .++|+.|++
T Consensus 231 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l 309 (520)
T 2z7x_B 231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTV 309 (520)
T ss_dssp EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEE
T ss_pred ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEc
Confidence 5543322211 113466666666665443333333 4555566666655554 111111111 156777777
Q ss_pred cCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChH--HHHHHhcCCCCCeEEecCCCCC
Q 010711 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS--GAAYLRNFKNLRSLEICGGGLT 409 (503)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~ 409 (503)
+++.+.... ....+++|++|++++|.+++..+..+..+++|+.|++++|.+... .+..+..+++|+.|++++|.+.
T Consensus 310 ~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~ 387 (520)
T 2z7x_B 310 SGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387 (520)
T ss_dssp ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCB
T ss_pred CCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCC
Confidence 777665421 125789999999999999987778888999999999999999973 4577899999999999999998
Q ss_pred h-hHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCCHHHHHH
Q 010711 410 D-AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488 (503)
Q Consensus 410 ~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 488 (503)
+ .....+..+++|+.|++++| .++...+..+. ++|+.|++++|+++.+ +..+..+++|++|++++|+++......
T Consensus 388 ~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~--~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~L~~N~l~~l~~~~ 463 (520)
T 2z7x_B 388 YDEKKGDCSWTKSLLSLNMSSN-ILTDTIFRCLP--PRIKVLDLHSNKIKSI-PKQVVKLEALQELNVASNQLKSVPDGI 463 (520)
T ss_dssp CCGGGCSCCCCTTCCEEECCSS-CCCGGGGGSCC--TTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCCCTTT
T ss_pred cccccchhccCccCCEEECcCC-CCCcchhhhhc--ccCCEEECCCCccccc-chhhhcCCCCCEEECCCCcCCccCHHH
Confidence 7 44445778899999999999 77765544332 7999999999999965 445559999999999999988543332
Q ss_pred HHhcCCCCcccccC
Q 010711 489 LQSRDLPNLVSFRP 502 (503)
Q Consensus 489 ~~~~~~~~L~~l~~ 502 (503)
+ ..+++|+.+.+
T Consensus 464 ~--~~l~~L~~L~l 475 (520)
T 2z7x_B 464 F--DRLTSLQKIWL 475 (520)
T ss_dssp T--TTCTTCCEEEC
T ss_pred h--ccCCcccEEEC
Confidence 4 37888888765
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.5e-35 Score=290.41 Aligned_cols=413 Identities=16% Similarity=0.128 Sum_probs=276.6
Q ss_pred CCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcE
Q 010711 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (503)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (503)
.++++.|+++++.+++..+..|.++++|++|++++| .+....+..|..+++|++|++++|.. . .+|.. .+++|++
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l-~-~lp~~--~l~~L~~ 125 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRL-Q-NISCC--PMASLRH 125 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSCC-C-EECSC--CCTTCSE
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCcC-C-ccCcc--ccccCCE
Confidence 367778888877777666667777788888888776 56666566777777888888877763 3 23333 6777888
Q ss_pred EeccCccccc-CccccccCCccccEeeccCCcCCCccccccccCCCCC--CEEEeecccC--CchhHHhhhc--------
Q 010711 136 LDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL--KSLQISCSKV--TDSGIAYLKG-------- 202 (503)
Q Consensus 136 L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~l~~-------- 202 (503)
|++++|.... ..+..++++++|++|+++++. +... .+..+++| ++|+++++.+ ....+..+..
T Consensus 126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l 201 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHL 201 (562)
T ss_dssp EECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEE
T ss_pred EECCCCCccccCchHhhcccCcccEEecCCCc-cccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEE
Confidence 8887765333 123567777788888877744 3322 23333444 7777777666 3333333322
Q ss_pred ------------------CCCCCEEEcCCCCCc----HHHHHHhhCCCCCCEEEccCCCCChhhhHhh---hcCCCCCEE
Q 010711 203 ------------------LQKLTLLNLEGCPVT----AACLDSLSALGSLFYLNLNRCQLSDDGCEKF---SKIGSLKVL 257 (503)
Q Consensus 203 ------------------~~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L 257 (503)
+++|+.++++++... ......+..+++++.+++..+.+.......+ ...++|++|
T Consensus 202 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L 281 (562)
T 3a79_B 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL 281 (562)
T ss_dssp EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEE
T ss_pred EecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEE
Confidence 334555555555311 1112345556666666666555543222111 123467777
Q ss_pred EccCCCCChHHHHHh-----hCCCCCCEEEccCCCC--ChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeee
Q 010711 258 NLGFNEITDECLVHL-----KGLTNLESLNLDSCGI--GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330 (503)
Q Consensus 258 ~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 330 (503)
++++|.+.+..+..+ ..++.|+.+++..+.+ .......+....++++|+++++.+.... ....+++|+.|+
T Consensus 282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 359 (562)
T 3a79_B 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLN 359 (562)
T ss_dssp EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEE
T ss_pred EEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEE
Confidence 777666554333322 3333344444444333 1111222223467899999888765432 125789999999
Q ss_pred ccCCCCChHHHHHHhCCCCCCEeecCCCCCCHh--HHHhhcCCCCCCEEEccCCccCh-HHHHHHhcCCCCCeEEecCCC
Q 010711 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDT--GLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGG 407 (503)
Q Consensus 331 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~ 407 (503)
+++|.++...+..+..+++|++|++++|.+++. .+..+..+++|+.|++++|.+.. .+...+..+++|++|++++|.
T Consensus 360 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~ 439 (562)
T 3a79_B 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439 (562)
T ss_dssp CCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC
T ss_pred CCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC
Confidence 999999886777788899999999999999873 34668899999999999999887 444457788999999999999
Q ss_pred CChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCCH
Q 010711 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 483 (503)
Q Consensus 408 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 483 (503)
+++..+..+. ++|+.|++++| .++.++. .+.++++|+.|++++|+++.+++..+..+++|+.|++++|+++-
T Consensus 440 l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 440 LTGSVFRCLP--PKVKVLDLHNN-RIMSIPK-DVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CCGGGGSSCC--TTCSEEECCSS-CCCCCCT-TTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred CCcchhhhhc--CcCCEEECCCC-cCcccCh-hhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence 9875554433 79999999999 8886544 44489999999999999998766558899999999999998863
No 24
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=4.5e-32 Score=263.57 Aligned_cols=381 Identities=22% Similarity=0.269 Sum_probs=213.7
Q ss_pred CCCeeEEEccCCCCChhhhhh-ccCCCCCCEEecCCCeecChh----hHHHhhCCCCCCEEEcCCCccccHHHHHHH-hC
Q 010711 56 GSSLLSVDLSGSDVTDSGLIH-LKDCSNLQSLDFNFCIQISDG----GLEHLRGLSNLTSLSFRRNNAITAQGMKAF-AG 129 (503)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~ 129 (503)
.++++.|+++++.+++..+.. +..+++|++|++++| .+... .+..+..+++|++|++++|. +.+..+..+ ..
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~ 79 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQG 79 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHH
Confidence 457899999999998776665 688999999999998 46543 24567788999999999987 455555444 34
Q ss_pred CC----CCcEEeccCccccc----CccccccCCccccEeeccCCcCCCcccccccc-----CCCCCCEEEeecccCCchh
Q 010711 130 LI----NLVKLDLERCTRIH----GGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-----GLTNLKSLQISCSKVTDSG 196 (503)
Q Consensus 130 l~----~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~ 196 (503)
++ +|++|++++|.... ..+..+..+++|++|++++|. +....+..+. ..++|++|+++++.++...
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 55 68999998875443 224566777788888887754 3332222222 2456777777777666533
Q ss_pred ----HHhhhcCCCCCEEEcCCCCCcHHHHHHhh-----CCCCCCEEEccCCCCChh----hhHhhhcCCCCCEEEccCCC
Q 010711 197 ----IAYLKGLQKLTLLNLEGCPVTAACLDSLS-----ALGSLFYLNLNRCQLSDD----GCEKFSKIGSLKVLNLGFNE 263 (503)
Q Consensus 197 ----~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~ 263 (503)
...+..+++|+.|++++|.+.......+. ..++|++|++++|.+... .+..+..+++|+.|++++|.
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 33445567777777777776554333332 245677777777766653 23444556666666666666
Q ss_pred CChHHHHHh-----hCCCCCCEEEccCCCCChhH----HHHHhcCCCCCEEecCCCccChhhHHHhh-----CCCCCCee
Q 010711 264 ITDECLVHL-----KGLTNLESLNLDSCGIGDEG----LVNLTGLCNLKCLELSDTQVGSSGLRHLS-----GLTNLESI 329 (503)
Q Consensus 264 ~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L 329 (503)
+.+.....+ ..+++|+.|++++|.++... +..+..+++|++|++++|.+.+.....+. ..++|+.|
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence 554332211 23566666666666665542 33334455566666655555443322221 11345555
Q ss_pred eccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhc-----CCCCCeEEec
Q 010711 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN-----FKNLRSLEIC 404 (503)
Q Consensus 330 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~ 404 (503)
++++|.++...... .+..+..+++|+.|++++|.+.+..+..+.. .++|++|+++
T Consensus 319 ~L~~n~l~~~~~~~--------------------l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 378 (461)
T 1z7x_W 319 WVKSCSFTAACCSH--------------------FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA 378 (461)
T ss_dssp ECTTSCCBGGGHHH--------------------HHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred EcCCCCCchHHHHH--------------------HHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECC
Confidence 55555444321110 1122333445555555555444443333321 3455555555
Q ss_pred CCCCCh----hHHHhhhcCCCCceeeccCCCCCChhhHHHHh-----cCCCCcEEecccCccchh
Q 010711 405 GGGLTD----AGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS-----GLTGLVSLNVSNSRITSA 460 (503)
Q Consensus 405 ~~~~~~----~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-----~l~~L~~L~l~~~~~~~~ 460 (503)
+|.+++ ..+..+..+++|+.|++++| .++......+. ..++|+.|++.++.+...
T Consensus 379 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~ 442 (461)
T 1z7x_W 379 DCDVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 442 (461)
T ss_dssp TSCCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred CCCCChhhHHHHHHHHHhCCCccEEECCCC-CCCHHHHHHHHHHhccCCcchhheeecccccCHH
Confidence 555554 22333444555555555555 44443332222 123466666655555443
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=9.3e-35 Score=281.89 Aligned_cols=382 Identities=18% Similarity=0.188 Sum_probs=291.0
Q ss_pred EEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcEEeccC
Q 010711 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140 (503)
Q Consensus 61 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 140 (503)
.++.++.+++. .+. -.++|++|++++| .+....+..|+++++|++|++++|.......+..|.++++|++|++++
T Consensus 14 ~~~c~~~~l~~-lp~---l~~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 14 NAICINRGLHQ-VPE---LPAHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp EEECCSSCCSS-CCC---CCTTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccCcCCCCccc-CCC---CCCccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 45666666653 222 2378999999997 677777788999999999999999743344467799999999999999
Q ss_pred cccccCccccccCCccccEeeccCCcCCCcccc--ccccCCCCCCEEEeecccCCchhHHh-hhcCCCCCEEEcCCCCCc
Q 010711 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM--KPLSGLTNLKSLQISCSKVTDSGIAY-LKGLQKLTLLNLEGCPVT 217 (503)
Q Consensus 141 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~ 217 (503)
|......+..+.++++|++|++++|.. ....+ ..+..+++|++|+++++.+....+.. +..+++|++|++++|.+.
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNL-DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCC-BTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CccCccChhhccCcccCCEEeCCCCCC-CccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 775555678899999999999999753 33222 34888999999999999988765554 789999999999999887
Q ss_pred HHHHHHhhCC--CCCCEEEccCCCCChhhhHh--------hhcCCCCCEEEccCCCCChHHHHHhhC---CCCCCEEEcc
Q 010711 218 AACLDSLSAL--GSLFYLNLNRCQLSDDGCEK--------FSKIGSLKVLNLGFNEITDECLVHLKG---LTNLESLNLD 284 (503)
Q Consensus 218 ~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~--------l~~~~~L~~L~l~~~~~~~~~~~~l~~---~~~L~~L~l~ 284 (503)
...+..+..+ .+++.++++++.+....+.. +..+++|+.|++++|.+.+..+..+.. .++|+.|.++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 6555555544 68999999998877543322 235578999999999998877766543 4899999999
Q ss_pred CCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhH
Q 010711 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364 (503)
Q Consensus 285 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 364 (503)
++....... ....+..+ .... ... ...++|+.+++++|.+....+..+..+++|++|++++|.+.+..
T Consensus 248 ~~~~~~~~~----~~~~~~~~--~~~~-----~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 315 (455)
T 3v47_A 248 NSYNMGSSF----GHTNFKDP--DNFT-----FKG-LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID 315 (455)
T ss_dssp TCTTTSCCT----TCCSSCCC--CTTT-----TGG-GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred ccccccccc----chhhhccC--cccc-----ccc-ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC
Confidence 885432110 00011100 0000 001 12467888888888887766667778888999999888888877
Q ss_pred HHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcC
Q 010711 365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 444 (503)
Q Consensus 365 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l 444 (503)
+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++| .++..++..+..+
T Consensus 316 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l 394 (455)
T 3v47_A 316 DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRL 394 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTC
T ss_pred hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccC
Confidence 777888889999999999888877777888899999999999988877788888899999999998 7888777778889
Q ss_pred CCCcEEecccCccchhh
Q 010711 445 TGLVSLNVSNSRITSAG 461 (503)
Q Consensus 445 ~~L~~L~l~~~~~~~~~ 461 (503)
++|+.|++++|++....
T Consensus 395 ~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 395 TSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp TTCCEEECCSSCBCCCT
T ss_pred CcccEEEccCCCcccCC
Confidence 99999999998876543
No 26
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=1.9e-31 Score=267.81 Aligned_cols=388 Identities=21% Similarity=0.240 Sum_probs=221.1
Q ss_pred CCCCCCEEEcCCCccccHHHHHHHh-CCCCCcEEeccCcccccC--ccccccCCccccEeeccCCcCCCccccc----cc
Q 010711 104 GLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHG--GLVNLKGLMKLESLNIKWCNCITDSDMK----PL 176 (503)
Q Consensus 104 ~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~ 176 (503)
.+++|++|+++++. +++..+..+. .+++|++|++.+|..+.. .+....++++|++|++++|. +.+.... ..
T Consensus 103 ~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 103 SYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFP 180 (594)
T ss_dssp HCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSC
T ss_pred hCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHh
Confidence 34444555544443 3333333333 344555555544432222 11222244455555554443 2211111 11
Q ss_pred cCCCCCCEEEeeccc--CCchhHHh-hhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCC--Ch----hhhHh
Q 010711 177 SGLTNLKSLQISCSK--VTDSGIAY-LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL--SD----DGCEK 247 (503)
Q Consensus 177 ~~l~~L~~L~l~~~~--~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~--~~----~~~~~ 247 (503)
..+++|++|+++++. +....... +..+++|+.|++++|......+..+..+++|+.|++..+.. .. ..+..
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 244556666655543 22222222 24456666666666633333444555666666666554431 10 12234
Q ss_pred hhcCCCCCEE-EccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHH-HhcCCCCCEEecCCCccChhhHHH-hhCCC
Q 010711 248 FSKIGSLKVL-NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN-LTGLCNLKCLELSDTQVGSSGLRH-LSGLT 324 (503)
Q Consensus 248 l~~~~~L~~L-~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~ 324 (503)
+..+++|+.+ .+..... ...+..+..+++|+.|++++|.+++..... +..+++|++|++.++ +.+..... ...++
T Consensus 261 l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK 338 (594)
T ss_dssp HHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred HhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence 5566666666 2322211 122222334567777777777665543332 446677777777666 33322222 23467
Q ss_pred CCCeeec---------cCCCCChHHHHHHh-CCCCCCEeecCCCCCCHhHHHhhc-CCCCCCEEEcc--C----CccC--
Q 010711 325 NLESINL---------SFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLF--G----ARIT-- 385 (503)
Q Consensus 325 ~L~~L~l---------~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~-- 385 (503)
+|+.|++ ..+.+++.....+. .+++|++|.+.++.+++.....+. .+++|+.|+++ + +.++
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~ 418 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence 7777776 23466665555554 478888887777888776666554 57888888887 3 3444
Q ss_pred --hH-HHHHHhcCCCCCeEEecCCCCChhHHHhhhc-CCCCceeeccCCCCCChhhHHHH-hcCCCCcEEecccCccchh
Q 010711 386 --DS-GAAYLRNFKNLRSLEICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELI-SGLTGLVSLNVSNSRITSA 460 (503)
Q Consensus 386 --~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~-~~l~~L~~L~l~~~~~~~~ 460 (503)
+. ....+..+++|+.|++++ .+++.+...+.. +++|+.|++++| .+++.....+ .++++|+.|++++|++++.
T Consensus 419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~ 496 (594)
T 2p1m_B 419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496 (594)
T ss_dssp CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence 22 233356788888888877 677776666655 788888888888 6776655555 6688888999988888766
Q ss_pred hHh-hccCCcccceEEeccCCCCHHHHHHHHhcCCCCcc
Q 010711 461 GLR-HLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 498 (503)
Q Consensus 461 ~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 498 (503)
+.. ....+++|++|++++|+++..+++.+. ..+|+|+
T Consensus 497 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~~lp~l~ 534 (594)
T 2p1m_B 497 ALLANASKLETMRSLWMSSCSVSFGACKLLG-QKMPKLN 534 (594)
T ss_dssp HHHHTGGGGGGSSEEEEESSCCBHHHHHHHH-HHCTTEE
T ss_pred HHHHHHHhCCCCCEEeeeCCCCCHHHHHHHH-HhCCCCE
Confidence 654 334578889999999988888888774 4677764
No 27
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4e-34 Score=289.91 Aligned_cols=423 Identities=22% Similarity=0.208 Sum_probs=292.2
Q ss_pred CCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcE
Q 010711 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (503)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (503)
.+++++|++++|.++...+..|.++++|++|+|++| .+....+.+|+.+++|++|++++|. +....+.+|.++++|++
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQK 128 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCE
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCE
Confidence 457999999999999777778999999999999997 6777778889999999999999997 55666678999999999
Q ss_pred EeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCC----CCEEEc
Q 010711 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK----LTLLNL 211 (503)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~----L~~L~l 211 (503)
|++++|......+..++++++|++|++++|.......+..+..+++|++|+++++.+....+..+..+.+ ...+++
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 208 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhc
Confidence 9999975444344568999999999999976544445677888999999999999887665555433322 224444
Q ss_pred CCCCCc------------------------HHHHHHhhCCCCCCEEEccCCC------CCh-------------------
Q 010711 212 EGCPVT------------------------AACLDSLSALGSLFYLNLNRCQ------LSD------------------- 242 (503)
Q Consensus 212 ~~~~~~------------------------~~~~~~l~~l~~L~~L~l~~~~------~~~------------------- 242 (503)
+.+.+. ......+..+..++...+.... +..
T Consensus 209 s~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 209 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred ccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence 444332 1122234444444433321100 000
Q ss_pred --------hh----------------------hHhhhcCCCCCEEEccCCCCChHHHH-------------------Hhh
Q 010711 243 --------DG----------------------CEKFSKIGSLKVLNLGFNEITDECLV-------------------HLK 273 (503)
Q Consensus 243 --------~~----------------------~~~l~~~~~L~~L~l~~~~~~~~~~~-------------------~l~ 273 (503)
.. ...+.....++.+++.++.+...... ...
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~ 368 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 368 (635)
T ss_dssp ECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCC
T ss_pred hhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccc
Confidence 00 01112223344444443322211000 001
Q ss_pred CCCCCCEEEccCCCCCh--hHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChH-HHHHHhCCCCC
Q 010711 274 GLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG-SLRKLAGLSSL 350 (503)
Q Consensus 274 ~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L 350 (503)
.+++|+.+.++.+.+.. ..+..+....+|+.+++..+..... ...+..+++|+.+++..+..... ....+..++++
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhhhhcccccccccccccccccc
Confidence 23444444444443321 1122333444555555544433222 12344567777777776633322 12345678899
Q ss_pred CEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccCh-HHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccC
Q 010711 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 429 (503)
Q Consensus 351 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 429 (503)
+.++++.|.+....+..+..+++++.|++++|.... ..+..+..+++|++|++++|.+++..+..|..+++|++|+|++
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~ 527 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence 999999998887767777889999999999996443 3456678899999999999999998888999999999999999
Q ss_pred CCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCC-cccceEEeccCCCC
Q 010711 430 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL-KNLRSLTLESCKVT 482 (503)
Q Consensus 430 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~ 482 (503)
| +++...+..|.++++|+.|++++|+++...+..+..+ ++|+.|++++|+++
T Consensus 528 N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 528 N-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp S-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred C-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 9 8999888889999999999999999999988888877 68999999998875
No 28
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=9.4e-32 Score=269.81 Aligned_cols=388 Identities=19% Similarity=0.216 Sum_probs=254.2
Q ss_pred CCCCCCEEEcCCCccccHHHHHHHhC-CCC-CcEEeccCcccccC--ccccccCCccccEeeccCCcCCCccc----ccc
Q 010711 104 GLSNLTSLSFRRNNAITAQGMKAFAG-LIN-LVKLDLERCTRIHG--GLVNLKGLMKLESLNIKWCNCITDSD----MKP 175 (503)
Q Consensus 104 ~~~~L~~L~l~~~~~~~~~~~~~~~~-l~~-L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~ 175 (503)
.+++|++|+++++. +++..+..+.. ++. |++|++++|..... .......+++|++|++++|.. .+.. ...
T Consensus 110 ~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~~~~~~l~~~ 187 (592)
T 3ogk_B 110 NLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSF-SEKDGKWLHEL 187 (592)
T ss_dssp HCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEE-ECCCSHHHHHH
T ss_pred hCCCCCeEEeeccE-ecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccc-cCcchhHHHHH
Confidence 67777777777774 45555555554 334 77777777653221 112234677777777777642 2221 123
Q ss_pred ccCCCCCCEEEeecccCC----chhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCC---hhhhHhh
Q 010711 176 LSGLTNLKSLQISCSKVT----DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS---DDGCEKF 248 (503)
Q Consensus 176 ~~~l~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~l 248 (503)
+..+++|++|+++++.+. ......+..+++|+.|++++|.+.. .+..+..+++|++|+++..... ......+
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 345778888888777665 2333445677888888888877665 3466777888888888753222 1122344
Q ss_pred hcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHH-HHHhcCCCCCEEecCCCccChhhH-HHhhCCCCC
Q 010711 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL-VNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNL 326 (503)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L 326 (503)
..+++|+.+++++... ...+..+..+++|++|++++|.+++... ..+..+++|++|++. +.+.+... .....+++|
T Consensus 267 ~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTC
T ss_pred hccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCC
Confidence 5667888888876432 2344455667788888888887766544 345678888888887 33433333 333567888
Q ss_pred CeeeccC-----------CCCChHHHHH-HhCCCCCCEeecCCCCCCHhHHHhhcC-CCCCCEEEcc----CCccCh---
Q 010711 327 ESINLSF-----------TGISDGSLRK-LAGLSSLKSLNLDARQITDTGLAALTS-LTGLTHLDLF----GARITD--- 386 (503)
Q Consensus 327 ~~L~l~~-----------~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~--- 386 (503)
++|++.+ +.+++..... ...+++|++|++..+.+++..+..+.. +++|+.|+++ .+.+++
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~ 424 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL 424 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence 8888883 4666654444 345788888888778888777766654 7888888885 445554
Q ss_pred --HHHHHHhcCCCCCeEEecCC--CCChhHHHhhhc-CCCCceeeccCCCCCChhh-HHHHhcCCCCcEEecccCccchh
Q 010711 387 --SGAAYLRNFKNLRSLEICGG--GLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSA 460 (503)
Q Consensus 387 --~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~-~~~L~~L~l~~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~ 460 (503)
..+..+..+++|+.|+++.| .+++.....+.. +++|+.|++++| .+++.. +..+.++++|+.|+|++|++++.
T Consensus 425 ~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence 23444567888888888653 367666665544 788888888888 677643 34456788888888888887765
Q ss_pred hHh-hccCCcccceEEeccCCCCHHHHHHHHhcCCCCcc
Q 010711 461 GLR-HLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 498 (503)
Q Consensus 461 ~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 498 (503)
... ....+++|++|++++|+++..+++.+. ..+|.+.
T Consensus 504 ~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~-~~~p~l~ 541 (592)
T 3ogk_B 504 AIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ-MARPYWN 541 (592)
T ss_dssp HHHHHHHHCSSCCEEEEESCBCCTTCTTGGG-GCCTTEE
T ss_pred HHHHHHHhcCccCeeECcCCcCCHHHHHHHH-HhCCCcE
Confidence 443 335678888888888888888777665 5667654
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2e-32 Score=265.38 Aligned_cols=348 Identities=30% Similarity=0.399 Sum_probs=275.3
Q ss_pred cCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcEEeccCcccccCccccccCCccc
Q 010711 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157 (503)
Q Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 157 (503)
..+++++.|+++++ .+... ..+..+++|++|++++|.. ....+ +.++++|++|++++|. +...+. +.++++|
T Consensus 43 ~~l~~l~~L~l~~~-~i~~l--~~~~~l~~L~~L~Ls~n~l-~~~~~--~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L 114 (466)
T 1o6v_A 43 TDLDQVTTLQADRL-GIKSI--DGVEYLNNLTQINFSNNQL-TDITP--LKNLTKLVDILMNNNQ-IADITP-LANLTNL 114 (466)
T ss_dssp HHHHTCCEEECCSS-CCCCC--TTGGGCTTCCEEECCSSCC-CCCGG--GTTCTTCCEEECCSSC-CCCCGG-GTTCTTC
T ss_pred hHhccccEEecCCC-CCccC--cchhhhcCCCEEECCCCcc-CCchh--hhccccCCEEECCCCc-cccChh-hcCCCCC
Confidence 35678999999987 44443 2478899999999999974 44433 8999999999999965 444444 8899999
Q ss_pred cEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccC
Q 010711 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237 (503)
Q Consensus 158 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 237 (503)
++|++++|. +... ..+..+++|++|+++++.+... ..+..+++|+.|++.++ +... ..+..+++|+.|++++
T Consensus 115 ~~L~L~~n~-l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~~-~~~~--~~~~~l~~L~~L~l~~ 186 (466)
T 1o6v_A 115 TGLTLFNNQ-ITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGNQ-VTDL--KPLANLTTLERLDISS 186 (466)
T ss_dssp CEEECCSSC-CCCC--GGGTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEES-CCCC--GGGTTCTTCCEEECCS
T ss_pred CEEECCCCC-CCCC--hHHcCCCCCCEEECCCCccCCC--hhhccCCcccEeecCCc-ccCc--hhhccCCCCCEEECcC
Confidence 999999875 4433 3388999999999999988763 35888999999999643 3332 2378899999999999
Q ss_pred CCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhH
Q 010711 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317 (503)
Q Consensus 238 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 317 (503)
|.+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.....
T Consensus 187 n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 260 (466)
T 1o6v_A 187 NKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 260 (466)
T ss_dssp SCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred CcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh
Confidence 988754 357888999999999998776544 66789999999999987754 356788999999999988776543
Q ss_pred HHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCC
Q 010711 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397 (503)
Q Consensus 318 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 397 (503)
+..+++|+.|++++|.+....+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+....+ +..+++
T Consensus 261 --~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~ 332 (466)
T 1o6v_A 261 --LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTK 332 (466)
T ss_dssp --GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTT
T ss_pred --hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCcc
Confidence 7788899999999888876443 7788899999999988887543 6788899999999988877654 678889
Q ss_pred CCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchh
Q 010711 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460 (503)
Q Consensus 398 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~ 460 (503)
|+.|++++|.+++. ..+..+++|+.|++++| .+++..+ +..+++|+.|++++|+++..
T Consensus 333 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 333 LQRLFFYNNKVSDV--SSLANLTNINWLSAGHN-QISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CCEEECCSSCCCCC--GGGTTCTTCCEEECCSS-CCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CCEeECCCCccCCc--hhhccCCCCCEEeCCCC-ccCccch--hhcCCCCCEEeccCCcccCC
Confidence 99999998888775 46778888999999888 7777665 77888899999998887774
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.2e-31 Score=259.88 Aligned_cols=345 Identities=28% Similarity=0.340 Sum_probs=285.7
Q ss_pred CCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcE
Q 010711 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (503)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (503)
.++++.|+++++.+... ..+..+++|++|++++| .+....+ +..+++|++|++++|.. ....+ +.++++|++
T Consensus 45 l~~l~~L~l~~~~i~~l--~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~l~~n~l-~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQI-ADITP--LANLTNLTG 116 (466)
T ss_dssp HHTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCC-CCCGG--GTTCTTCCE
T ss_pred hccccEEecCCCCCccC--cchhhhcCCCEEECCCC-ccCCchh--hhccccCCEEECCCCcc-ccChh--hcCCCCCCE
Confidence 45799999999888642 35788999999999997 5655543 88999999999999974 44333 899999999
Q ss_pred EeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCC
Q 010711 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (503)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 215 (503)
|++++|. +...+. +.++++|++|++++|. +.. ...+..+++|++|++.+ .+... ..+..+++|+.|++++|.
T Consensus 117 L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~--~~~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 117 LTLFNNQ-ITDIDP-LKNLTNLNRLELSSNT-ISD--ISALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNK 188 (466)
T ss_dssp EECCSSC-CCCCGG-GTTCTTCSEEEEEEEE-ECC--CGGGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSC
T ss_pred EECCCCC-CCCChH-HcCCCCCCEEECCCCc-cCC--ChhhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCc
Confidence 9999974 444433 8899999999999865 332 24588899999999974 33332 238899999999999998
Q ss_pred CcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHH
Q 010711 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295 (503)
Q Consensus 216 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 295 (503)
+... ..+..+++|++|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|+.|++++|.+....+
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-- 260 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-- 260 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--
Confidence 8764 357889999999999999886544 77899999999999988753 357789999999999998876554
Q ss_pred HhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCC
Q 010711 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375 (503)
Q Consensus 296 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 375 (503)
+..+++|+.|++++|.+..... +..+++|+.|++++|.+....+ +..+++|+.|++++|.+++..+ +..+++|+
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 334 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 334 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCC
T ss_pred hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCC
Confidence 7889999999999998877544 7889999999999998886543 7889999999999999988654 67899999
Q ss_pred EEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCCh
Q 010711 376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435 (503)
Q Consensus 376 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 435 (503)
.|++++|.+... ..+..+++|+.|++++|.+++..+ +..+++|+.|++++| .++.
T Consensus 335 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n-~~~~ 389 (466)
T 1o6v_A 335 RLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ-AWTN 389 (466)
T ss_dssp EEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE-EEEC
T ss_pred EeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC-cccC
Confidence 999999998876 467899999999999999988765 788999999999999 5555
No 31
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=2.5e-30 Score=259.64 Aligned_cols=471 Identities=21% Similarity=0.229 Sum_probs=330.5
Q ss_pred CcHHHHHHHHHHHH-hccccC--cccccccc--cCceeEEecCCCCCCChhHHHHHHhcCCCeeEEEccCCCC-Chhh--
Q 010711 2 LPRDISQQIFNELV-YSRCLT--EVSLEAFR--DCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDV-TDSG-- 73 (503)
Q Consensus 2 ~~~~~~~~~~~~l~-~~~~~~--~~~~~~~~--~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~-~~~~-- 73 (503)
+|+|++..+|..|- .+.... .+-..+.. ....+.+.+..+..... ..+...+++++.|+++++.. .+..
T Consensus 9 LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~~l~ 85 (594)
T 2p1m_B 9 FPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSP---ATVIRRFPKVRSVELKGKPHFADFNLV 85 (594)
T ss_dssp -CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCH---HHHHHHCTTCCEEEEECSCGGGGGTCS
T ss_pred CCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCH---HHHHhhCCCceEEeccCCCchhhcccc
Confidence 79999999998776 221110 01111110 11234555555543332 24455689999999998532 1111
Q ss_pred -----------hh-hccCCCCCCEEecCCCeecChhhHHHhh-CCCCCCEEEcCCCccccHH-HHHHHhCCCCCcEEecc
Q 010711 74 -----------LI-HLKDCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQ-GMKAFAGLINLVKLDLE 139 (503)
Q Consensus 74 -----------~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~l~ 139 (503)
.. ....+++|++|++++| .+.......+. .+++|++|++++|..++.. .+..+.++++|++|+++
T Consensus 86 ~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~ 164 (594)
T 2p1m_B 86 PDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLR 164 (594)
T ss_dssp CTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECT
T ss_pred cccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCc
Confidence 11 1357899999999998 57777777776 7999999999999655554 44455589999999999
Q ss_pred CcccccCcccc----ccCCccccEeeccCCc-CCCcccccc-ccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCC
Q 010711 140 RCTRIHGGLVN----LKGLMKLESLNIKWCN-CITDSDMKP-LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213 (503)
Q Consensus 140 ~~~~~~~~~~~----~~~l~~L~~L~l~~~~-~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 213 (503)
+|......+.. ...+++|++|++++|. .+....... ...+++|++|++.++......+..+..+++|+.|++..
T Consensus 165 ~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 165 ESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG 244 (594)
T ss_dssp TCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSB
T ss_pred CCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccccc
Confidence 98733333322 3467899999999876 222222222 34579999999998743334566778899999999876
Q ss_pred CCC--c----HHHHHHhhCCCCCCEE-EccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHH-HhhCCCCCCEEEccC
Q 010711 214 CPV--T----AACLDSLSALGSLFYL-NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV-HLKGLTNLESLNLDS 285 (503)
Q Consensus 214 ~~~--~----~~~~~~l~~l~~L~~L-~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~ 285 (503)
+.. . ...+..+.++++|+.+ .+..... ...+..+..+++|+.|+++++.+...... .+..+++|+.|.+.+
T Consensus 245 ~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~ 323 (594)
T 2p1m_B 245 YTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD 323 (594)
T ss_dssp CCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEG
T ss_pred ccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcC
Confidence 642 1 1234467889999999 3433221 22334445779999999999987765443 356889999999998
Q ss_pred CCCChhHHHHH-hcCCCCCEEecC---------CCccChhhHHHhh-CCCCCCeeeccCCCCChHHHHHHh-CCCCCCEe
Q 010711 286 CGIGDEGLVNL-TGLCNLKCLELS---------DTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLA-GLSSLKSL 353 (503)
Q Consensus 286 ~~~~~~~~~~l-~~~~~L~~L~l~---------~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L 353 (503)
| +++.....+ ..+++|++|++. .+.+.+.....+. .+++|+.|.+..+.+++.....+. .+++|+.|
T Consensus 324 ~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L 402 (594)
T 2p1m_B 324 Y-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRF 402 (594)
T ss_dssp G-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEE
T ss_pred c-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCccee
Confidence 8 554444444 358999999983 3456655554443 489999999888899987777776 58999999
Q ss_pred ecC--C----CCCC----HhHH-HhhcCCCCCCEEEccCCccChHHHHHHhc-CCCCCeEEecCCCCChhHHHhh-hcCC
Q 010711 354 NLD--A----RQIT----DTGL-AALTSLTGLTHLDLFGARITDSGAAYLRN-FKNLRSLEICGGGLTDAGVKHI-KDLS 420 (503)
Q Consensus 354 ~l~--~----~~~~----~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~-~~~~ 420 (503)
+++ + +.++ +.+. ..+..+++|+.|++++ .+++.....+.. +++|+.|++++|.+++.+...+ ..++
T Consensus 403 ~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 481 (594)
T 2p1m_B 403 RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCD 481 (594)
T ss_dssp EEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCT
T ss_pred EeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCC
Confidence 998 3 5666 3222 3356789999999988 777777777765 9999999999999988777766 6789
Q ss_pred CCceeeccCCCCCChhhHH-HHhcCCCCcEEecccCccchhhHhhc-cCCcccceEEeccCC
Q 010711 421 SLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSNSRITSAGLRHL-KPLKNLRSLTLESCK 480 (503)
Q Consensus 421 ~L~~L~l~~~~~l~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~ 480 (503)
+|+.|++++| .+++.... ....+++|+.|++++|+++..+...+ ..+|+|+...+.++.
T Consensus 482 ~L~~L~L~~n-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 482 SLRKLEIRDC-PFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp TCCEEEEESC-SCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred CcCEEECcCC-CCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 9999999999 56765554 34568999999999999987776666 567888777776653
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3e-31 Score=247.56 Aligned_cols=306 Identities=27% Similarity=0.355 Sum_probs=212.8
Q ss_pred CCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCE
Q 010711 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232 (503)
Q Consensus 153 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 232 (503)
.+++|++|++.++.... ...+..+++|++|+++++.+..... +..+++|++|++++|.+... ..+..+++|++
T Consensus 42 ~l~~L~~L~l~~~~i~~---~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~ 114 (347)
T 4fmz_A 42 ELESITKLVVAGEKVAS---IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRE 114 (347)
T ss_dssp HHTTCSEEECCSSCCCC---CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred hcccccEEEEeCCcccc---chhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCE
Confidence 44555666665533221 1235556666666666665554322 56666666666666655542 24566666777
Q ss_pred EEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCcc
Q 010711 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312 (503)
Q Consensus 233 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 312 (503)
|++++|.+....+ +..+++|+.|++++|...... ..+..+++|+.|++++|.+..... +..+++|++|++++|.+
T Consensus 115 L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 115 LYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI 189 (347)
T ss_dssp EECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC
T ss_pred EECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc
Confidence 7776666654322 556667777777666433222 225667777777777776654433 66777777777777776
Q ss_pred ChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHH
Q 010711 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392 (503)
Q Consensus 313 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 392 (503)
..... +..+++|+.+++.+|.+....+ +..+++|++|++++|.++...+ +..+++|+.|++++|.+... ..+
T Consensus 190 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~ 261 (347)
T 4fmz_A 190 EDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAV 261 (347)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGG
T ss_pred ccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhH
Confidence 65433 6677788888888887765433 6778888888888888877544 77888999999999888775 357
Q ss_pred hcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccc
Q 010711 393 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 472 (503)
Q Consensus 393 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 472 (503)
..+++|++|++++|.+++. ..+..+++|+.|++++| .++...+..+.++++|+.|++++|+++...+ +..+++|+
T Consensus 262 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 336 (347)
T 4fmz_A 262 KDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD 336 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred hcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence 7889999999999988875 45778899999999999 8888888889999999999999999988765 77899999
Q ss_pred eEEeccCCCCH
Q 010711 473 SLTLESCKVTA 483 (503)
Q Consensus 473 ~L~l~~~~~~~ 483 (503)
+|++++|+++.
T Consensus 337 ~L~l~~N~i~~ 347 (347)
T 4fmz_A 337 SADFANQVIKK 347 (347)
T ss_dssp EESSSCC----
T ss_pred eeehhhhcccC
Confidence 99999998763
No 33
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.98 E-value=1.8e-32 Score=272.41 Aligned_cols=428 Identities=20% Similarity=0.171 Sum_probs=288.7
Q ss_pred CCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcE
Q 010711 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (503)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (503)
+...+++++++++++. .|..+. ++|++|++++| .+....+..|+.+++|++|++++|. +....|..|.++++|++
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCE
T ss_pred cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCC-CccccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCE
Confidence 4455899999999985 454443 89999999997 6777777889999999999999996 56666888999999999
Q ss_pred EeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCC--CEEEcCC
Q 010711 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL--TLLNLEG 213 (503)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~ 213 (503)
|++++|. +...+.. .+++|++|++++|.......+..+..+++|++|+++++.+.... +..+++| +.|++++
T Consensus 105 L~Ls~N~-l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 105 LDVSHNR-LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDL 178 (562)
T ss_dssp EECTTSC-CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEE
T ss_pred EECCCCc-CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeec
Confidence 9999965 4455544 79999999999976433234578899999999999999887643 4444555 9999999
Q ss_pred CCC--cHHHHHHhhCC--------------------------CCCCEEEccCCCCCh----hhhHhhhcCCCCCEEEccC
Q 010711 214 CPV--TAACLDSLSAL--------------------------GSLFYLNLNRCQLSD----DGCEKFSKIGSLKVLNLGF 261 (503)
Q Consensus 214 ~~~--~~~~~~~l~~l--------------------------~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~ 261 (503)
|.+ ....+..+..+ ++|+.++++++.... .....+..+++|+.+++.+
T Consensus 179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~ 258 (562)
T 3a79_B 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258 (562)
T ss_dssp SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence 877 44333334332 233344444332110 1112333444444444444
Q ss_pred CCCChHHHHH---hhCCCCCCEEEccCCCCChhHHHHH-----hcCCCCCEEecCCCcc--ChhhHHHhhCCCCCCeeec
Q 010711 262 NEITDECLVH---LKGLTNLESLNLDSCGIGDEGLVNL-----TGLCNLKCLELSDTQV--GSSGLRHLSGLTNLESINL 331 (503)
Q Consensus 262 ~~~~~~~~~~---l~~~~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~L~~L~l 331 (503)
+.+....... ....++|++|++++|.+.+..+..+ ..+..|+.+++..+.+ .......+-..++|+.|++
T Consensus 259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l 338 (562)
T 3a79_B 259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338 (562)
T ss_dssp EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEE
T ss_pred CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEc
Confidence 4333221111 1122355555555554332222211 1222222222222222 0011111112256888888
Q ss_pred cCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccCh--HHHHHHhcCCCCCeEEecCCCCC
Q 010711 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD--SGAAYLRNFKNLRSLEICGGGLT 409 (503)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~ 409 (503)
+++.+.... ....+++|++|++++|.+++..+..+..+++|+.|++++|.++. ..+..+..+++|+.|++++|.++
T Consensus 339 ~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 339 SDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416 (562)
T ss_dssp ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred cCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence 887665321 11578999999999999998777888899999999999999987 33566889999999999999998
Q ss_pred h-hHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCCHHHHHH
Q 010711 410 D-AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488 (503)
Q Consensus 410 ~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 488 (503)
+ .....+..+++|+.|++++| .++...+..+. ++|+.|++++|.++.++. .+..+++|++|++++|.++......
T Consensus 417 ~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~L~~N~l~~l~~~~ 492 (562)
T 3a79_B 417 SHAYDRTCAWAESILVLNLSSN-MLTGSVFRCLP--PKVKVLDLHNNRIMSIPK-DVTHLQALQELNVASNQLKSVPDGV 492 (562)
T ss_dssp SCCSSCCCCCCTTCCEEECCSS-CCCGGGGSSCC--TTCSEEECCSSCCCCCCT-TTTSSCCCSEEECCSSCCCCCCTTS
T ss_pred CccChhhhcCcccCCEEECCCC-CCCcchhhhhc--CcCCEEECCCCcCcccCh-hhcCCCCCCEEECCCCCCCCCCHHH
Confidence 7 44445778899999999999 77764443322 699999999999997644 4448999999999999988543322
Q ss_pred HHhcCCCCcccccC
Q 010711 489 LQSRDLPNLVSFRP 502 (503)
Q Consensus 489 ~~~~~~~~L~~l~~ 502 (503)
+ ..+++|+.+.+
T Consensus 493 ~--~~l~~L~~L~l 504 (562)
T 3a79_B 493 F--DRLTSLQYIWL 504 (562)
T ss_dssp T--TTCTTCCCEEC
T ss_pred H--hcCCCCCEEEe
Confidence 4 37888888765
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=8e-33 Score=269.63 Aligned_cols=319 Identities=19% Similarity=0.218 Sum_probs=206.6
Q ss_pred EEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCC
Q 010711 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214 (503)
Q Consensus 135 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 214 (503)
.++.++ ..+...|..+. +.+++|+++++. +....+..+..+++|++|+++++.+....+..+.++++|+.|++++|
T Consensus 15 ~v~c~~-~~l~~ip~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 15 AVLCHR-KRFVAVPEGIP--TETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp EEECCS-CCCSSCCSCCC--TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCC-CCcCcCCCCCC--CCCcEEECCCCc-cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 444444 23333443332 577888888744 55555667777888888888888777766677788888888888888
Q ss_pred CCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHH
Q 010711 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294 (503)
Q Consensus 215 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 294 (503)
.+.......+.++++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+......
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 77655444566778888888888877766666777778888888887777665555666777788888877777766666
Q ss_pred HHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCC
Q 010711 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374 (503)
Q Consensus 295 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 374 (503)
.+..+++|+.|+++++.+.......+..+++|+.|++++|......+.......+|++|++++|.++..+...+..+++|
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence 67777777777777777666555556666677777776654333222222233466666666666665554555566666
Q ss_pred CEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEeccc
Q 010711 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454 (503)
Q Consensus 375 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~ 454 (503)
+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++| .++...+..|..+++|+.|++++
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCS
T ss_pred CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccC
Confidence 66666666665555555555666666666666665555555555666666666666 55555555555566666666666
Q ss_pred Cccc
Q 010711 455 SRIT 458 (503)
Q Consensus 455 ~~~~ 458 (503)
|++.
T Consensus 330 N~l~ 333 (477)
T 2id5_A 330 NPLA 333 (477)
T ss_dssp SCEE
T ss_pred CCcc
Confidence 6544
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=5e-30 Score=239.26 Aligned_cols=305 Identities=30% Similarity=0.352 Sum_probs=178.6
Q ss_pred CCCCCCEEEcCCCccccHHHHHHHhCCCCCcEEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCC
Q 010711 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183 (503)
Q Consensus 104 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 183 (503)
.+++|++|+++++.. .. .+ .+..+++|++|++++|. +...+. +..+++|++|++++|. +.. ...+..+++|+
T Consensus 42 ~l~~L~~L~l~~~~i-~~-~~-~~~~~~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~L~~n~-i~~--~~~~~~l~~L~ 113 (347)
T 4fmz_A 42 ELESITKLVVAGEKV-AS-IQ-GIEYLTNLEYLNLNGNQ-ITDISP-LSNLVKLTNLYIGTNK-ITD--ISALQNLTNLR 113 (347)
T ss_dssp HHTTCSEEECCSSCC-CC-CT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCC--CGGGTTCTTCS
T ss_pred hcccccEEEEeCCcc-cc-ch-hhhhcCCccEEEccCCc-cccchh-hhcCCcCCEEEccCCc-ccC--chHHcCCCcCC
Confidence 456777777777653 22 12 25666677777776653 333322 5666666666666643 221 23455566666
Q ss_pred EEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCC
Q 010711 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263 (503)
Q Consensus 184 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 263 (503)
+|+++++.+..... +..+++|+.|++++|...... ..+..+++|++|+++++.+....+ +..
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~------------- 175 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IAN------------- 175 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGG-------------
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hcc-------------
Confidence 66666555553322 455555555555555322211 124445555555555554443221 344
Q ss_pred CChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHH
Q 010711 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343 (503)
Q Consensus 264 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 343 (503)
+++|+.|++++|.+.+... +..+++|+.+++.++.+..... +..+++|+.|++++|.++...+
T Consensus 176 -----------l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 176 -----------LTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp -----------CTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred -----------CCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--
Confidence 4455555555544433222 4445555555555555443322 4455666666666665554332
Q ss_pred HhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCc
Q 010711 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423 (503)
Q Consensus 344 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 423 (503)
+..+++|++|++++|.++.. ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+++..+..+..+++|+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 55667777777777766653 3466777788888877777664 3467778888888888888877777778888888
Q ss_pred eeeccCCCCCChhhHHHHhcCCCCcEEecccCccc
Q 010711 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458 (503)
Q Consensus 424 ~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 458 (503)
.|++++| .++...+ +..+++|+.|++++|+++
T Consensus 315 ~L~L~~n-~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 315 TLFLSQN-HITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSS-SCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEEccCC-ccccccC--hhhhhccceeehhhhccc
Confidence 8888888 6776655 677888888888888765
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=6.3e-32 Score=263.28 Aligned_cols=318 Identities=20% Similarity=0.184 Sum_probs=259.5
Q ss_pred CEEEcCCCccccHHHHHHHhCCCCCcEEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEee
Q 010711 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188 (503)
Q Consensus 109 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 188 (503)
+.++.++... . .+|..+ .+++++|+++++......+..+.++++|++|++++| .+....+..+..+++|++|+++
T Consensus 14 ~~v~c~~~~l-~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRF-V-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TEEECCSCCC-S-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCc-C-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECC
Confidence 4566655542 2 234323 258999999996644444567889999999999985 4565667788899999999999
Q ss_pred cccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHH
Q 010711 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 268 (503)
Q Consensus 189 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 268 (503)
++.+.......+.++++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 99888766667788999999999999887766667888999999999999888777778888999999999999888777
Q ss_pred HHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCC
Q 010711 269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348 (503)
Q Consensus 269 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 348 (503)
...+..+++|+.|++.++.+.......+..+++|+.|+++++..............+|+.|++++|.++......+..++
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence 77788899999999999988776666778889999999988766554443344456899999999988877667788899
Q ss_pred CCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeecc
Q 010711 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428 (503)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 428 (503)
+|+.|++++|.++...+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++......+..+++|+.|+++
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence 99999999999988777778889999999999999988877788889999999999999988777778888999999999
Q ss_pred CCC
Q 010711 429 QNC 431 (503)
Q Consensus 429 ~~~ 431 (503)
+|+
T Consensus 329 ~N~ 331 (477)
T 2id5_A 329 SNP 331 (477)
T ss_dssp SSC
T ss_pred CCC
Confidence 984
No 37
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=3.1e-30 Score=258.79 Aligned_cols=440 Identities=17% Similarity=0.153 Sum_probs=312.1
Q ss_pred CChhHHHHHHhcCCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHH
Q 010711 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123 (503)
Q Consensus 44 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 123 (503)
+...|........ +.+.+.+. ........+.++++|++|++++|..+... +..+. ..........
T Consensus 40 vck~W~~~~~~~~---~~l~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-----~~~~~------~~~~~~~~~l 104 (592)
T 3ogk_B 40 VCRRWFKIDSETR---EHVTMALC-YTATPDRLSRRFPNLRSLKLKGKPRAAMF-----NLIPE------NWGGYVTPWV 104 (592)
T ss_dssp SCHHHHHHHHHHC---CEEEESCG-GGSCHHHHHHHCTTCSEEEEECSCGGGGG-----TCSCT------TSCCBCHHHH
T ss_pred HhHHHHHhhhccc---cEEEEeec-cccChHHHHHhCCCCeEEEecCCcchhhc-----ccccc------cccccchHHH
Confidence 3556766543322 23333321 11122334567888888888887443221 11110 1111122334
Q ss_pred HHHHhCCCCCcEEeccCcccccCccccccC-Ccc-ccEeeccCCcCCCcccccc-ccCCCCCCEEEeecccCCch----h
Q 010711 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKG-LMK-LESLNIKWCNCITDSDMKP-LSGLTNLKSLQISCSKVTDS----G 196 (503)
Q Consensus 124 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-l~~-L~~L~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~----~ 196 (503)
+....++++|++|++++|......+..+.. ++. |++|++.+|.......... ...+++|++|+++++.+.+. .
T Consensus 105 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l 184 (592)
T 3ogk_B 105 TEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWL 184 (592)
T ss_dssp HHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHH
T ss_pred HHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHH
Confidence 444558999999999997543334444544 445 9999999987544333332 34789999999999876544 3
Q ss_pred HHhhhcCCCCCEEEcCCCCCc----HHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCC---hHHH
Q 010711 197 IAYLKGLQKLTLLNLEGCPVT----AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT---DECL 269 (503)
Q Consensus 197 ~~~l~~~~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~ 269 (503)
......+++|+.|+++++.+. ...+..+..+++|+.|+++++.+.. .+..+..+++|+.|+++..... ....
T Consensus 185 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 263 (592)
T 3ogk_B 185 HELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKY 263 (592)
T ss_dssp HHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSS
T ss_pred HHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHH
Confidence 344578899999999999886 3445556789999999999988765 5577888999999999853222 1122
Q ss_pred HHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhH-HHhhCCCCCCeeeccCCCCChHHHHH-HhCC
Q 010711 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGISDGSLRK-LAGL 347 (503)
Q Consensus 270 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~ 347 (503)
..+..+++|+.+.+.++.. ...+..+..+++|++|++++|.+..... ..+..+++|+.|++. +.+.+..... ...+
T Consensus 264 ~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~ 341 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYC 341 (592)
T ss_dssp SCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHC
T ss_pred HHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhC
Confidence 3356778999999987632 2344566778999999999998776554 446889999999998 4454444443 4578
Q ss_pred CCCCEeecC-----------CCCCCHhHHHh-hcCCCCCCEEEccCCccChHHHHHHhc-CCCCCeEEec----CCCCCh
Q 010711 348 SSLKSLNLD-----------ARQITDTGLAA-LTSLTGLTHLDLFGARITDSGAAYLRN-FKNLRSLEIC----GGGLTD 410 (503)
Q Consensus 348 ~~L~~L~l~-----------~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~ 410 (503)
++|++|++. .+.+++.+... ...+++|+.|++..+.+++.....+.. +++|++|+++ .+.+++
T Consensus 342 ~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITD 421 (592)
T ss_dssp TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSS
T ss_pred CCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccC
Confidence 999999999 46777765544 346899999999888999888777765 9999999996 566765
Q ss_pred h-----HHHhhhcCCCCceeeccCCC-CCChhhHHHHh-cCCCCcEEecccCccchhhH-hhccCCcccceEEeccCCCC
Q 010711 411 A-----GVKHIKDLSSLTLLNLSQNC-NLTDKTLELIS-GLTGLVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESCKVT 482 (503)
Q Consensus 411 ~-----~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~ 482 (503)
. ....+..+++|+.|++++|. .++......+. .+++|+.|++++|++++... ..+..+++|++|++++|+++
T Consensus 422 ~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 422 LPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred chHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence 2 34456779999999998763 36776666655 48999999999999988654 44578999999999999999
Q ss_pred HHHHHHHHhcCCCCcccccC
Q 010711 483 ANDIKRLQSRDLPNLVSFRP 502 (503)
Q Consensus 483 ~~~~~~~~~~~~~~L~~l~~ 502 (503)
..++..+. ..+|+|+.|++
T Consensus 502 ~~~~~~~~-~~l~~L~~L~l 520 (592)
T 3ogk_B 502 ERAIAAAV-TKLPSLRYLWV 520 (592)
T ss_dssp HHHHHHHH-HHCSSCCEEEE
T ss_pred HHHHHHHH-HhcCccCeeEC
Confidence 98888775 57899998864
No 38
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=7.8e-32 Score=273.15 Aligned_cols=431 Identities=21% Similarity=0.222 Sum_probs=280.0
Q ss_pred EEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcEEeccC
Q 010711 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140 (503)
Q Consensus 61 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 140 (503)
+.+.++.+++ .+|..++ +++++|+|++| .++...+.+|.++++|++|++++|. +....+.+|.++++|++|++++
T Consensus 35 ~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~ 109 (635)
T 4g8a_A 35 TYQCMELNFY-KIPDNLP--FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTG 109 (635)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTT
T ss_pred EEECCCCCcC-ccCCCCC--cCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccC
Confidence 3455555555 3344332 47999999997 7887778889999999999999996 5666677899999999999999
Q ss_pred cccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCch-hHHhhhcCCCCCEEEcCCCCCcHH
Q 010711 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPVTAA 219 (503)
Q Consensus 141 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~ 219 (503)
|......+..+.++++|++|++++|. +.......++.+++|++|+++++.+... .+..+..+++|+.|++++|.+...
T Consensus 110 N~l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 110 NPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp CCCCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CcCCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 75333344568999999999999965 5555666789999999999999988653 356678899999999999988664
Q ss_pred HHHHhhCCC----CCCEEEccCCCCChhhh------------------------HhhhcCCCCCEEEccCCC------CC
Q 010711 220 CLDSLSALG----SLFYLNLNRCQLSDDGC------------------------EKFSKIGSLKVLNLGFNE------IT 265 (503)
Q Consensus 220 ~~~~l~~l~----~L~~L~l~~~~~~~~~~------------------------~~l~~~~~L~~L~l~~~~------~~ 265 (503)
.+..+..+. ....++++.+.+....+ ..+..+..++...+.... +.
T Consensus 189 ~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~ 268 (635)
T 4g8a_A 189 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 268 (635)
T ss_dssp CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred ccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccc
Confidence 444443322 23355565554443221 222233333322221100 00
Q ss_pred hH---------------------------HHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhh--
Q 010711 266 DE---------------------------CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-- 316 (503)
Q Consensus 266 ~~---------------------------~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-- 316 (503)
.. ....+....+++.+.+.++.+... ..+.....++.|++.++.+....
T Consensus 269 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~ 346 (635)
T 4g8a_A 269 KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTL 346 (635)
T ss_dssp CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCC
T ss_pred cccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcc
Confidence 00 000000111222222221111000 01112223333333332221100
Q ss_pred -----------------HHHhhCCCCCCeeeccCCCCChH--HH-----------------------HHHhCCCCCCEee
Q 010711 317 -----------------LRHLSGLTNLESINLSFTGISDG--SL-----------------------RKLAGLSSLKSLN 354 (503)
Q Consensus 317 -----------------~~~~~~~~~L~~L~l~~~~~~~~--~~-----------------------~~~~~~~~L~~L~ 354 (503)
......+++|+.++++.+.+... .+ ..+..+++|+.++
T Consensus 347 ~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~ 426 (635)
T 4g8a_A 347 KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLD 426 (635)
T ss_dssp BCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEE
T ss_pred cchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchh
Confidence 00112344555555555443211 01 1223456666666
Q ss_pred cCCCCCCHh-HHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCC-hhHHHhhhcCCCCceeeccCCCC
Q 010711 355 LDARQITDT-GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT-DAGVKHIKDLSSLTLLNLSQNCN 432 (503)
Q Consensus 355 l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~ 432 (503)
+..+..... ....+..+++++.++++.|.+....+..+..+++|+.|++++|.+. ...+..+..+++|+.|++++| +
T Consensus 427 l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~ 505 (635)
T 4g8a_A 427 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-Q 505 (635)
T ss_dssp CTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-C
T ss_pred hhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-c
Confidence 665443322 2244567788888999888887777777888999999999998753 345667888999999999999 8
Q ss_pred CChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCCHHHHHHHHhcCC-CCcccccC
Q 010711 433 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL-PNLVSFRP 502 (503)
Q Consensus 433 l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~l~~ 502 (503)
++...+..|.++++|++|+|++|+++.+.+..+..+++|+.|++++|.++......+. .+ ++|+.|.+
T Consensus 506 L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~l~~~L~~L~L 574 (635)
T 4g8a_A 506 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ--HFPSSLAFLNL 574 (635)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTT--CCCTTCCEEEC
T ss_pred cCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHH--hhhCcCCEEEe
Confidence 9998888999999999999999999998888899999999999999999877655554 55 56887765
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=2.1e-30 Score=245.56 Aligned_cols=316 Identities=20% Similarity=0.183 Sum_probs=181.0
Q ss_pred CCCCcEEeccCcccccCcc-ccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCE
Q 010711 130 LINLVKLDLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208 (503)
Q Consensus 130 l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 208 (503)
++++++|+++++. +...+ ..+..+++|++|+++++. +....+..+..+++|++|+++++.+....+..+..+++|+.
T Consensus 44 l~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCCc-hhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 4566666666643 33333 234556666666666643 34444445666666666666666665555555566666666
Q ss_pred EEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCC
Q 010711 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288 (503)
Q Consensus 209 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 288 (503)
|++++|.+.......+..+++|++|++++|.+....+..+..+++|+.|++++|.+... .+..+++|+.++++++.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 66666655543323345556666666666655554444455555566666655554432 123344555555555443
Q ss_pred ChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhh
Q 010711 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 368 (503)
Q Consensus 289 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 368 (503)
.. +...++|+.|++++|.+.... ....++|+.|++++|.+++. ..+
T Consensus 199 ~~-----------------------------~~~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L~l~~n~l~~~--~~l 244 (390)
T 3o6n_A 199 ST-----------------------------LAIPIAVEELDASHNSINVVR---GPVNVELTILKLQHNNLTDT--AWL 244 (390)
T ss_dssp SE-----------------------------EECCSSCSEEECCSSCCCEEE---CCCCSSCCEEECCSSCCCCC--GGG
T ss_pred cc-----------------------------cCCCCcceEEECCCCeeeecc---ccccccccEEECCCCCCccc--HHH
Confidence 32 122334555555555444321 11235666666666666553 345
Q ss_pred cCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCc
Q 010711 369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448 (503)
Q Consensus 369 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~ 448 (503)
..+++|+.|++++|.+....+..+..+++|++|++++|.+++. +..+..+++|+.|++++| .+... +..+..+++|+
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~l~~L~ 321 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHN-HLLHV-ERNQPQFDRLE 321 (390)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSS-CCCCC-GGGHHHHTTCS
T ss_pred cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCC-cceec-CccccccCcCC
Confidence 5666677777777766665555666677777777777766653 233345677777777777 56543 33455667777
Q ss_pred EEecccCccchhhHhhccCCcccceEEeccCCCCHHHHHHHH
Q 010711 449 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 490 (503)
Q Consensus 449 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 490 (503)
.|++++|++.... +..+++|+.|++++|+++......+.
T Consensus 322 ~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~~~~~ 360 (390)
T 3o6n_A 322 NLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRALF 360 (390)
T ss_dssp EEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHHHT
T ss_pred EEECCCCccceeC---chhhccCCEEEcCCCCccchhHHHHH
Confidence 7777777776652 45667777777777777766655543
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=5.1e-29 Score=236.07 Aligned_cols=314 Identities=17% Similarity=0.176 Sum_probs=219.8
Q ss_pred CCCCCCEEEcCCCccccHHHHHHHhCCCCCcEEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCC
Q 010711 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183 (503)
Q Consensus 104 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 183 (503)
.++++++|+++++. +....+..+..+++|++|++++|......+..+..+++|++|++++|. +....+..+..+++|+
T Consensus 43 ~l~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCc-hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCC
Confidence 36899999999986 455555668899999999999976444445678999999999999865 5556667789999999
Q ss_pred EEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCC
Q 010711 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 263 (503)
Q Consensus 184 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 263 (503)
+|+++++.+.......+..+++|+.|++++|.+....+..+..+++|++|++++|.+... .+..+++|+.++++++.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence 999999999876666678999999999999998876666788999999999999998864 35678999999999998
Q ss_pred CChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHH
Q 010711 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343 (503)
Q Consensus 264 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 343 (503)
+.. +...++|+.|++++|.+..... ...++|+.|++++|.+... ..
T Consensus 198 l~~-----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~------------------------ 243 (390)
T 3o6n_A 198 LST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AW------------------------ 243 (390)
T ss_dssp CSE-----EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GG------------------------
T ss_pred ccc-----cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HH------------------------
Confidence 764 3456788899998887754321 1234566666655554432 23
Q ss_pred HhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCc
Q 010711 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423 (503)
Q Consensus 344 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 423 (503)
+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++..+ ..+..+++|++|++++|.+... +..+..+++|+
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~ 321 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLE 321 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEE-CSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCS
T ss_pred HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccC-cccCCCCCCCEEECCCCcceec-CccccccCcCC
Confidence 344455555555555555444444555555555555555554431 1223456666666666666543 33345566677
Q ss_pred eeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhH
Q 010711 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462 (503)
Q Consensus 424 ~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 462 (503)
.|++++| .++... +..+++|+.|++++|++.....
T Consensus 322 ~L~L~~N-~i~~~~---~~~~~~L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 322 NLYLDHN-SIVTLK---LSTHHTLKNLTLSHNDWDCNSL 356 (390)
T ss_dssp EEECCSS-CCCCCC---CCTTCCCSEEECCSSCEEHHHH
T ss_pred EEECCCC-ccceeC---chhhccCCEEEcCCCCccchhH
Confidence 7777766 455432 4556777777777777665544
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.2e-29 Score=253.35 Aligned_cols=309 Identities=17% Similarity=0.162 Sum_probs=174.9
Q ss_pred CCCCcEEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEE
Q 010711 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209 (503)
Q Consensus 130 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 209 (503)
+.+++.++++++......+..+..+++|++|++++|. +....+..+..+++|++|+++++.+....+..+..+++|+.|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 4677788877754322223345677778888887754 455555567777788888887777776666667777777777
Q ss_pred EcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCC
Q 010711 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289 (503)
Q Consensus 210 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 289 (503)
++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.... +..+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 77777776544444567777777777777777666666777777777777777665432 345666777777766554
Q ss_pred hhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhc
Q 010711 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 369 (503)
Q Consensus 290 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 369 (503)
. +...++|+.|++++|.+..... ...++|+.|++++|.++.. ..+..+++|+.|++++|.+.+..+..+.
T Consensus 206 ~-----l~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 206 T-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp E-----EECCTTCSEEECCSSCCCEEEC---SCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred c-----ccCCchhheeeccCCccccccc---ccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 3 2234556666666665543221 1124555555555555432 3344455555555555555544444444
Q ss_pred CCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcE
Q 010711 370 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 449 (503)
Q Consensus 370 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~ 449 (503)
.+++|+.|++++|.+... +..+..+++|+.|++++|.+... +..+..+++|+.|++++| .++... +..+++|+.
T Consensus 276 ~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~l~~L~~L~L~~N-~l~~~~---~~~~~~L~~ 349 (597)
T 3oja_B 276 KMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHN-SIVTLK---LSTHHTLKN 349 (597)
T ss_dssp TCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSS-CCCCCC---CCTTCCCSE
T ss_pred CccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCcc-CcccccCCCCCEEECCCC-CCCCcC---hhhcCCCCE
Confidence 555555555555544442 11223344555555555544432 223344444555555544 333321 333444444
Q ss_pred EecccCccc
Q 010711 450 LNVSNSRIT 458 (503)
Q Consensus 450 L~l~~~~~~ 458 (503)
|++++|++.
T Consensus 350 L~l~~N~~~ 358 (597)
T 3oja_B 350 LTLSHNDWD 358 (597)
T ss_dssp EECCSSCEE
T ss_pred EEeeCCCCC
Confidence 444444444
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=2.8e-29 Score=240.97 Aligned_cols=344 Identities=20% Similarity=0.139 Sum_probs=221.7
Q ss_pred CCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcE
Q 010711 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (503)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (503)
+++++.|+++++.+++. ..+..+++|++|++++| .+... .++.+++|++|++++|.. .+. + ++++++|++
T Consensus 41 l~~L~~L~Ls~n~l~~~--~~l~~l~~L~~L~Ls~n-~l~~~---~~~~l~~L~~L~Ls~N~l-~~~-~--~~~l~~L~~ 110 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSN-NITTL---DLSQNTNLTYLACDSNKL-TNL-D--VTPLTKLTY 110 (457)
T ss_dssp HTTCCEEECCSSCCCCC--TTGGGCTTCSEEECCSS-CCSCC---CCTTCTTCSEEECCSSCC-SCC-C--CTTCTTCCE
T ss_pred cCCCCEEEccCCCcccC--hhhcccCCCCEEEccCC-cCCeE---ccccCCCCCEEECcCCCC-cee-e--cCCCCcCCE
Confidence 57788888888888754 36788888888888887 45554 277888888888888863 332 2 778888888
Q ss_pred EeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCC
Q 010711 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (503)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 215 (503)
|++++|. +...+ +..+++|++|++++|. ++.. .+..+++|++|+++++...... .+..+++|+.|++++|.
T Consensus 111 L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 111 LNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp EECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred EECCCCc-CCeec--CCCCCcCCEEECCCCc-ccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence 8888864 33332 7778888888888755 3322 3667888888888877433222 46677888888888887
Q ss_pred CcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHH
Q 010711 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295 (503)
Q Consensus 216 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 295 (503)
+... + +..+++|+.|++++|.+... .+..+++|+.|++++|.+.+. + +..+++|+.|++++|.+.+..
T Consensus 182 l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~--- 249 (457)
T 3bz5_A 182 ITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELD--- 249 (457)
T ss_dssp CCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC---
T ss_pred ccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcC---
Confidence 7663 1 66778888888888877754 366778888888888877763 2 667788888888888776543
Q ss_pred HhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHH--------h
Q 010711 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA--------A 367 (503)
Q Consensus 296 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------~ 367 (503)
+..+++|+.++++.+ +|+.+++++|......+ +..+++|+.|++++|...+..+. .
T Consensus 250 ~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~ 313 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD 313 (457)
T ss_dssp CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec
Confidence 345666666665443 34444444443222111 23455666666655543322110 1
Q ss_pred hcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCC
Q 010711 368 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447 (503)
Q Consensus 368 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L 447 (503)
+..+++|+.|++++|+++.. .+..+++|+.|++++|.+.+ ++.|..|.+++| .+.+. ..+..|
T Consensus 314 l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n-~l~g~-----~~~~~l 376 (457)
T 3bz5_A 314 LSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNN-NFEAE-----GQTITM 376 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGT-SEEEE-----EEEEEC
T ss_pred hhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCC-cEEec-----ceeeec
Confidence 22345666666666666653 25566666666666666654 244555555555 34332 244567
Q ss_pred cEEecccCccchhhHh
Q 010711 448 VSLNVSNSRITSAGLR 463 (503)
Q Consensus 448 ~~L~l~~~~~~~~~~~ 463 (503)
..+++++|.++...|.
T Consensus 377 ~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 377 PKETLTNNSLTIAVSP 392 (457)
T ss_dssp CCBCCBTTBEEEECCT
T ss_pred CccccccCcEEEEcCh
Confidence 7777888777755443
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=1.4e-28 Score=236.10 Aligned_cols=355 Identities=17% Similarity=0.166 Sum_probs=254.3
Q ss_pred ceeEEecCCCCCCChhHHHHHHhcCCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEE
Q 010711 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111 (503)
Q Consensus 32 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 111 (503)
.++.+.+..+. +... .. ...+++|+.|+++++.+++. .++.+++|++|++++| .+... .++.+++|++|
T Consensus 43 ~L~~L~Ls~n~-l~~~--~~-l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N-~l~~~---~~~~l~~L~~L 111 (457)
T 3bz5_A 43 TLTSLDCHNSS-ITDM--TG-IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSN-KLTNL---DVTPLTKLTYL 111 (457)
T ss_dssp TCCEEECCSSC-CCCC--TT-GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSS-CCSCC---CCTTCTTCCEE
T ss_pred CCCEEEccCCC-cccC--hh-hcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCC-CCcee---ecCCCCcCCEE
Confidence 57788776553 2221 12 34589999999999998864 2789999999999997 56554 27889999999
Q ss_pred EcCCCccccHHHHHHHhCCCCCcEEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeeccc
Q 010711 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191 (503)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 191 (503)
++++|.. .. .+ +.++++|++|++++|. +... .+..+++|++|++++|...... .+..+++|++|+++++.
T Consensus 112 ~L~~N~l-~~-l~--~~~l~~L~~L~l~~N~-l~~l--~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 112 NCDTNKL-TK-LD--VSQNPLLTYLNCARNT-LTEI--DVSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp ECCSSCC-SC-CC--CTTCTTCCEEECTTSC-CSCC--CCTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSC
T ss_pred ECCCCcC-Ce-ec--CCCCCcCCEEECCCCc-ccee--ccccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCc
Confidence 9999974 33 23 8899999999999965 3333 3788999999999987655433 47788999999999998
Q ss_pred CCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHH
Q 010711 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 271 (503)
Q Consensus 192 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 271 (503)
++... +..+++|+.|++++|.+... .+..+++|+.|++++|.+... + +..+++|+.|++++|.+.+..
T Consensus 182 l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~--- 249 (457)
T 3bz5_A 182 ITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELD--- 249 (457)
T ss_dssp CCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC---
T ss_pred cceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcC---
Confidence 88643 78889999999999988764 477889999999999998873 3 778899999999999887643
Q ss_pred hhCCCCCCEEEccCCCCC----------hhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHH
Q 010711 272 LKGLTNLESLNLDSCGIG----------DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341 (503)
Q Consensus 272 l~~~~~L~~L~l~~~~~~----------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 341 (503)
+..+++|+.|.+.++.+. ...+ +..+++|+.|++++|......+ ...++|+.+++
T Consensus 250 ~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~---~~~~~L~~L~l---------- 314 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD---CQAAGITELDL---------- 314 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE---CTTCCCSCCCC----------
T ss_pred HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceec---cCCCcceEech----------
Confidence 345666666665544221 1111 2234555555555554322211 12233444433
Q ss_pred HHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCC
Q 010711 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421 (503)
Q Consensus 342 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 421 (503)
..+++|++|++++|.+++. .+..+++|+.|++++|++.+ ++.|+.|.+++|.+.+. +.+..
T Consensus 315 ---~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~ 375 (457)
T 3bz5_A 315 ---SQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTIT 375 (457)
T ss_dssp ---TTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEE
T ss_pred ---hhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeee
Confidence 3458899999999999884 37789999999999998875 46777888888887764 35677
Q ss_pred CceeeccCCCCCChhhHHHH-hcCCCCcEEeccc
Q 010711 422 LTLLNLSQNCNLTDKTLELI-SGLTGLVSLNVSN 454 (503)
Q Consensus 422 L~~L~l~~~~~l~~~~~~~~-~~l~~L~~L~l~~ 454 (503)
|..+++++| ++++..|..+ ....++.....+.
T Consensus 376 l~~l~l~~N-~l~g~ip~~~~~~~~~~~~~~~~~ 408 (457)
T 3bz5_A 376 MPKETLTNN-SLTIAVSPDLLDQFGNPMNIEPGD 408 (457)
T ss_dssp CCCBCCBTT-BEEEECCTTCBCTTSCCCEEEESS
T ss_pred cCccccccC-cEEEEcChhHhcccCceeeccCCC
Confidence 888999998 7776554433 2334454444443
No 44
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=5.9e-29 Score=238.55 Aligned_cols=372 Identities=15% Similarity=0.072 Sum_probs=204.6
Q ss_pred CCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCC-------------CCEEEcCCCccccHH
Q 010711 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSN-------------LTSLSFRRNNAITAQ 122 (503)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-------------L~~L~l~~~~~~~~~ 122 (503)
..+|+.++++++.+ +..|..++++++|++|++++| .+....+..++.+.+ +++|++++|.. .+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n-~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l-~~- 85 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWS-EWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL-SS- 85 (454)
T ss_dssp -------------------------CCHHHHHHHHH-HHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC-SC-
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCC-cccccCCcccccchhcchhhhhhhhccCCCEEEecCCcc-cc-
Confidence 45677777777777 566667777777777777765 333333444444433 57788877753 22
Q ss_pred HHHHHhCCCCCcEEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhc
Q 010711 123 GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202 (503)
Q Consensus 123 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 202 (503)
.|. -.++|++|++++|. +...+.. +++|++|++++|. +... ..+ .++|++|+++++.+... + .+..
T Consensus 86 lp~---~~~~L~~L~l~~n~-l~~lp~~---~~~L~~L~l~~n~-l~~l--~~~--~~~L~~L~L~~n~l~~l-p-~~~~ 151 (454)
T 1jl5_A 86 LPE---LPPHLESLVASCNS-LTELPEL---PQSLKSLLVDNNN-LKAL--SDL--PPLLEYLGVSNNQLEKL-P-ELQN 151 (454)
T ss_dssp CCS---CCTTCSEEECCSSC-CSSCCCC---CTTCCEEECCSSC-CSCC--CSC--CTTCCEEECCSSCCSSC-C-CCTT
T ss_pred CCC---CcCCCCEEEccCCc-CCccccc---cCCCcEEECCCCc-cCcc--cCC--CCCCCEEECcCCCCCCC-c-ccCC
Confidence 122 23577888887753 3333322 3677788877753 2221 111 15778888877777652 2 4777
Q ss_pred CCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEE
Q 010711 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282 (503)
Q Consensus 203 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 282 (503)
+++|++|++++|.+... +. ..++|++|++++|.+... + .+..+++|+.|++++|.+.+. + ...++|+.|+
T Consensus 152 l~~L~~L~l~~N~l~~l-p~---~~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~l-~---~~~~~L~~L~ 221 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKKL-P---DLPLSLESIV 221 (454)
T ss_dssp CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSC-C---CCCTTCCEEE
T ss_pred CCCCCEEECCCCcCccc-CC---CcccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCcC-C---CCcCcccEEE
Confidence 77888888887776542 11 234778888887777652 2 467777888888877766531 1 1235777888
Q ss_pred ccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCH
Q 010711 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362 (503)
Q Consensus 283 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 362 (503)
+++|.+...+ .+..+++|++|++++|.+.... ..+++|+.|++++|.+.... ...++|++|++++|.+++
T Consensus 222 l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~l~----~~~~~L~~L~l~~N~l~~l~----~~~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 222 AGNNILEELP--ELQNLPFLTTIYADNNLLKTLP----DLPPSLEALNVRDNYLTDLP----ELPQSLTFLDVSENIFSG 291 (454)
T ss_dssp CCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCC----SCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSE
T ss_pred CcCCcCCccc--ccCCCCCCCEEECCCCcCCccc----ccccccCEEECCCCcccccC----cccCcCCEEECcCCccCc
Confidence 8877666332 3667777888888777765421 12467788888777666421 124677888888777765
Q ss_pred hHHHhhcCCCCCCEEEccCCccChHHHHHHhcC-CCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHH
Q 010711 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNF-KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441 (503)
Q Consensus 363 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 441 (503)
.. ...++|+.|++++|.+... ... ++|+.|++++|.+++.. . .+++|+.|++++| .++..+.
T Consensus 292 l~----~~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~lp-~---~~~~L~~L~L~~N-~l~~lp~--- 354 (454)
T 1jl5_A 292 LS----ELPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIELP-A---LPPRLERLIASFN-HLAEVPE--- 354 (454)
T ss_dssp ES----CCCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSS-CCSCCCC---
T ss_pred cc----CcCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccccc-c---cCCcCCEEECCCC-ccccccc---
Confidence 21 1225777888877777652 223 47778888877776521 1 2467788888777 6665433
Q ss_pred hcCCCCcEEecccCccch--hhHhhccCC-------------cccceEEeccCCCCH
Q 010711 442 SGLTGLVSLNVSNSRITS--AGLRHLKPL-------------KNLRSLTLESCKVTA 483 (503)
Q Consensus 442 ~~l~~L~~L~l~~~~~~~--~~~~~l~~~-------------~~L~~L~l~~~~~~~ 483 (503)
.+++|+.|++++|++.. ..|..+..+ ++|+.|++++|+++.
T Consensus 355 -~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 355 -LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp -CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred -hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 46778888888877776 334444444 677888888877664
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=2.5e-28 Score=243.77 Aligned_cols=312 Identities=16% Similarity=0.165 Sum_probs=257.9
Q ss_pred CCCCCEEEcCCCccccHHHHHHHhCCCCCcEEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCE
Q 010711 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184 (503)
Q Consensus 105 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 184 (503)
+.+++.++++++. +....+..+..+++|++|++++|......+..+..+++|++|++++|. +....+..++.+++|++
T Consensus 50 l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCE
Confidence 5789999999986 455556678899999999999976444445688999999999999865 66666777899999999
Q ss_pred EEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCC
Q 010711 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264 (503)
Q Consensus 185 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 264 (503)
|+++++.+...+...+..+++|+.|++++|.+....+..+..+++|++|++++|.+... .+..+++|+.+++++|.+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence 99999999876666678999999999999998877666788999999999999988764 356688999999999987
Q ss_pred ChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHH
Q 010711 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344 (503)
Q Consensus 265 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 344 (503)
.. +...++|+.|++++|.+..... ...++|+.|++++|.+.+. ..+..+++|+.|++++|.+....+..+
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCCCEEEC---SCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cc-----ccCCchhheeeccCCccccccc---ccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHh
Confidence 64 4566789999999998765432 1246899999999988764 567889999999999999988777788
Q ss_pred hCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCce
Q 010711 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424 (503)
Q Consensus 345 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 424 (503)
..+++|+.|++++|.++.. +..+..+++|+.|++++|.+... +..+..+++|+.|++++|.+.+.. +..+++|+.
T Consensus 275 ~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~ 349 (597)
T 3oja_B 275 VKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKN 349 (597)
T ss_dssp TTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSE
T ss_pred cCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCcc-CcccccCCCCCEEECCCCCCCCcC---hhhcCCCCE
Confidence 8999999999999999874 33445789999999999998865 445678999999999999988753 667899999
Q ss_pred eeccCCCCCChhh
Q 010711 425 LNLSQNCNLTDKT 437 (503)
Q Consensus 425 L~l~~~~~l~~~~ 437 (503)
|++++| .+....
T Consensus 350 L~l~~N-~~~~~~ 361 (597)
T 3oja_B 350 LTLSHN-DWDCNS 361 (597)
T ss_dssp EECCSS-CEEHHH
T ss_pred EEeeCC-CCCChh
Confidence 999999 555533
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=1.1e-27 Score=221.44 Aligned_cols=289 Identities=20% Similarity=0.198 Sum_probs=169.9
Q ss_pred cccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEc
Q 010711 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235 (503)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 235 (503)
+++.++++++. +.. .+..+ .+++++|+++++.+.......+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~-l~~-lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLG-LEK-VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSC-CCS-CCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCC-ccc-cCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 56667666533 221 12222 246666777666666554445566666666666666555443444555555666666
Q ss_pred cCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccCh-
Q 010711 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS- 314 (503)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~- 314 (503)
++|.+... +..+ .++|+.|++++|.+....+..+..+++|++|++++|.+..
T Consensus 108 s~n~l~~l-~~~~--------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 160 (330)
T 1xku_A 108 SKNQLKEL-PEKM--------------------------PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 160 (330)
T ss_dssp CSSCCSBC-CSSC--------------------------CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG
T ss_pred CCCcCCcc-Chhh--------------------------cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc
Confidence 55554421 1111 1345555555554444444445555555555555554432
Q ss_pred -hhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHh
Q 010711 315 -SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393 (503)
Q Consensus 315 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 393 (503)
.....+..+++|+.|++++|.++.... ...++|++|++++|.+++..+..+..+++|+.|++++|.+....+..+.
T Consensus 161 ~~~~~~~~~l~~L~~L~l~~n~l~~l~~---~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 237 (330)
T 1xku_A 161 GIENGAFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237 (330)
T ss_dssp GBCTTGGGGCTTCCEEECCSSCCCSCCS---SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred CcChhhccCCCCcCEEECCCCccccCCc---cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence 222334555566666666555543111 1126777777777777766566677777777777777777766655677
Q ss_pred cCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhc------CCCCcEEecccCccch--hhHhhc
Q 010711 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG------LTGLVSLNVSNSRITS--AGLRHL 465 (503)
Q Consensus 394 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~------l~~L~~L~l~~~~~~~--~~~~~l 465 (503)
.+++|++|++++|.++. .+..+..+++|+.|++++| .++......|.. .+.|+.|++++|++.. +.+..+
T Consensus 238 ~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f 315 (330)
T 1xku_A 238 NTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 315 (330)
T ss_dssp GSTTCCEEECCSSCCSS-CCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG
T ss_pred CCCCCCEEECCCCcCcc-CChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcccccccCcccc
Confidence 77788888888877764 3445667778888888877 677666555543 3678888888887764 445677
Q ss_pred cCCcccceEEeccCC
Q 010711 466 KPLKNLRSLTLESCK 480 (503)
Q Consensus 466 ~~~~~L~~L~l~~~~ 480 (503)
..+++++.+++++|+
T Consensus 316 ~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 316 RCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTCCCGGGEEC----
T ss_pred ccccceeEEEecccC
Confidence 778888888888764
No 47
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=1e-27 Score=230.02 Aligned_cols=348 Identities=18% Similarity=0.103 Sum_probs=247.5
Q ss_pred CCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCC-------------cEEeccCccccc
Q 010711 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL-------------VKLDLERCTRIH 145 (503)
Q Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L-------------~~L~l~~~~~~~ 145 (503)
+.++|++|+++++ .+ ...+..++++++|++|++++|. +.+..|..++++.+| ++|++++|. +.
T Consensus 9 ~~~~L~~L~l~~n-~l-~~iP~~i~~L~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~ 84 (454)
T 1jl5_A 9 SNTFLQEPLRHSS-NL-TEMPVEAENVKSKTEYYNAWSE-WERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LS 84 (454)
T ss_dssp ---------------------------CCHHHHHHHHHH-HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CS
T ss_pred ccccchhhhcccC-ch-hhCChhHhcccchhhhhccCCc-ccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cc
Confidence 4578999999986 56 4567789999999999999986 456677777777765 889998864 44
Q ss_pred CccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcC-CCCCEEEcCCCCCcHHHHHHh
Q 010711 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL-QKLTLLNLEGCPVTAACLDSL 224 (503)
Q Consensus 146 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~l 224 (503)
..+.. .++|++|+++++. +.. .+. ..++|++|+++++.+... ... ++|++|++++|.+... + .+
T Consensus 85 ~lp~~---~~~L~~L~l~~n~-l~~-lp~---~~~~L~~L~l~~n~l~~l-----~~~~~~L~~L~L~~n~l~~l-p-~~ 149 (454)
T 1jl5_A 85 SLPEL---PPHLESLVASCNS-LTE-LPE---LPQSLKSLLVDNNNLKAL-----SDLPPLLEYLGVSNNQLEKL-P-EL 149 (454)
T ss_dssp CCCSC---CTTCSEEECCSSC-CSS-CCC---CCTTCCEEECCSSCCSCC-----CSCCTTCCEEECCSSCCSSC-C-CC
T ss_pred cCCCC---cCCCCEEEccCCc-CCc-ccc---ccCCCcEEECCCCccCcc-----cCCCCCCCEEECcCCCCCCC-c-cc
Confidence 43332 3689999999864 333 222 247899999999887642 222 6899999999988763 3 58
Q ss_pred hCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCE
Q 010711 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304 (503)
Q Consensus 225 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 304 (503)
..+++|++|++++|.+.. .+. ..++|++|++++|.+... + .+..+++|+.|++++|.+.+.+ ...++|++
T Consensus 150 ~~l~~L~~L~l~~N~l~~-lp~---~~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~l~----~~~~~L~~ 219 (454)
T 1jl5_A 150 QNSSFLKIIDVDNNSLKK-LPD---LPPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKKLP----DLPLSLES 219 (454)
T ss_dssp TTCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCC----CCCTTCCE
T ss_pred CCCCCCCEEECCCCcCcc-cCC---CcccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCcCC----CCcCcccE
Confidence 899999999999998875 222 235899999999988763 3 4788999999999999876422 12358999
Q ss_pred EecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCcc
Q 010711 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384 (503)
Q Consensus 305 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 384 (503)
|++++|.+.... .+..+++|+.|++++|.+.... ...++|++|++++|.+++.+ ..+++|+.|++++|.+
T Consensus 220 L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~l~----~~~~~L~~L~l~~N~l~~l~----~~~~~L~~L~ls~N~l 289 (454)
T 1jl5_A 220 IVAGNNILEELP--ELQNLPFLTTIYADNNLLKTLP----DLPPSLEALNVRDNYLTDLP----ELPQSLTFLDVSENIF 289 (454)
T ss_dssp EECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCC----SCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCC
T ss_pred EECcCCcCCccc--ccCCCCCCCEEECCCCcCCccc----ccccccCEEECCCCcccccC----cccCcCCEEECcCCcc
Confidence 999999887432 4788999999999999887521 13589999999999988632 1358999999999988
Q ss_pred ChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcC-CCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHh
Q 010711 385 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL-SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463 (503)
Q Consensus 385 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 463 (503)
...+ ...++|+.|++++|.+++. ..+ ++|+.|++++| .++..+. .+++|+.|++++|.++.++.
T Consensus 290 ~~l~----~~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N-~l~~lp~----~~~~L~~L~L~~N~l~~lp~- 354 (454)
T 1jl5_A 290 SGLS----ELPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNN-KLIELPA----LPPRLERLIASFNHLAEVPE- 354 (454)
T ss_dssp SEES----CCCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSCCCC-
T ss_pred Cccc----CcCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCC-ccccccc----cCCcCCEEECCCCccccccc-
Confidence 7632 1237899999999998863 233 58999999999 6776332 36899999999999987543
Q ss_pred hccCCcccceEEeccCCCCH
Q 010711 464 HLKPLKNLRSLTLESCKVTA 483 (503)
Q Consensus 464 ~l~~~~~L~~L~l~~~~~~~ 483 (503)
.+++|++|++++|+++.
T Consensus 355 ---~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 355 ---LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp ---CCTTCCEEECCSSCCSS
T ss_pred ---hhhhccEEECCCCCCCc
Confidence 47899999999998876
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=9.2e-28 Score=222.07 Aligned_cols=290 Identities=18% Similarity=0.193 Sum_probs=170.5
Q ss_pred cccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEc
Q 010711 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235 (503)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 235 (503)
.++.++++++. +.. .+..+ .+++++|+++++.+....+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~-l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLG-LKA-VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSC-CSS-CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCC-ccc-cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 56777777643 222 22222 256777777777766555556666677777777766665544455666666666666
Q ss_pred cCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChh
Q 010711 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 315 (503)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 315 (503)
++|.+.... ..+. ++|++|++++|.+.......+..+++|+.|++++|.+... ..
T Consensus 110 ~~n~l~~l~-~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~ 164 (332)
T 2ft3_A 110 SKNHLVEIP-PNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS----------------------GF 164 (332)
T ss_dssp CSSCCCSCC-SSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG----------------------GS
T ss_pred CCCcCCccC-cccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC----------------------CC
Confidence 666555321 1111 4555555555544433333344444555555544443320 01
Q ss_pred hHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcC
Q 010711 316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395 (503)
Q Consensus 316 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 395 (503)
....+..+ +|+.|++++|.++... . ...++|++|++++|.++...+..+..+++|+.|++++|.+....+..+..+
T Consensus 165 ~~~~~~~l-~L~~L~l~~n~l~~l~-~--~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l 240 (332)
T 2ft3_A 165 EPGAFDGL-KLNYLRISEAKLTGIP-K--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240 (332)
T ss_dssp CTTSSCSC-CCSCCBCCSSBCSSCC-S--SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC
T ss_pred CcccccCC-ccCEEECcCCCCCccC-c--cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC
Confidence 12223333 5555555555544311 1 112567777777777766555566677777777777777776665566777
Q ss_pred CCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhc------CCCCcEEecccCccc--hhhHhhccC
Q 010711 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG------LTGLVSLNVSNSRIT--SAGLRHLKP 467 (503)
Q Consensus 396 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~------l~~L~~L~l~~~~~~--~~~~~~l~~ 467 (503)
++|++|++++|.++. .+..+..+++|+.|++++| .++...+..+.. .++|+.|++++|++. ...+..+..
T Consensus 241 ~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~ 318 (332)
T 2ft3_A 241 PTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318 (332)
T ss_dssp TTCCEEECCSSCCCB-CCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTT
T ss_pred CCCCEEECCCCcCee-cChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccc
Confidence 777777777777764 3445667777888888777 677666555543 356888888888776 455667778
Q ss_pred CcccceEEeccCC
Q 010711 468 LKNLRSLTLESCK 480 (503)
Q Consensus 468 ~~~L~~L~l~~~~ 480 (503)
+++|+.+++++|+
T Consensus 319 l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 319 VTDRLAIQFGNYK 331 (332)
T ss_dssp BCCSTTEEC----
T ss_pred cchhhhhhccccc
Confidence 8888888888774
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=1.1e-26 Score=214.74 Aligned_cols=289 Identities=16% Similarity=0.169 Sum_probs=192.6
Q ss_pred CCcEEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEc
Q 010711 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211 (503)
Q Consensus 132 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 211 (503)
++++++++++ .+...|..+. +.+++|+++++. +.......+..+++|++|+++++.+....+..+..+++|++|++
T Consensus 32 ~l~~l~~~~~-~l~~lp~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVPKDLP--PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTS-CCCSCCCSCC--TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCC-CccccCccCC--CCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 7899999884 3455554443 689999999965 55566667899999999999999998877888999999999999
Q ss_pred CCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCCh--HHHHHhhCCCCCCEEEccCCCCC
Q 010711 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIG 289 (503)
Q Consensus 212 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~ 289 (503)
++|.+... +..+ .++|++|++++|.+....+..+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.++
T Consensus 108 s~n~l~~l-~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLKEL-PEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCSBC-CSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCcc-Chhh--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 99988643 2222 2789999999999988777788889999999999887753 23345666777777777777655
Q ss_pred hhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhc
Q 010711 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 369 (503)
Q Consensus 290 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 369 (503)
..+. . ..++|++|++ ++|.++...+..+..+++|++|++++|.+++..+..+.
T Consensus 185 ~l~~-~--~~~~L~~L~l------------------------~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 237 (330)
T 1xku_A 185 TIPQ-G--LPPSLTELHL------------------------DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237 (330)
T ss_dssp SCCS-S--CCTTCSEEEC------------------------TTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred cCCc-c--ccccCCEEEC------------------------CCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence 3211 0 1134444444 44444443334444555555555555555554444455
Q ss_pred CCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhc------CCCCceeeccCCCCCCh--hhHHHH
Q 010711 370 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD------LSSLTLLNLSQNCNLTD--KTLELI 441 (503)
Q Consensus 370 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~l~~--~~~~~~ 441 (503)
.+++|+.|++++|.+... +..+..+++|++|++++|.+++.....|.. .+.++.+++++| .+.. ..+..+
T Consensus 238 ~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N-~~~~~~i~~~~f 315 (330)
T 1xku_A 238 NTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN-PVQYWEIQPSTF 315 (330)
T ss_dssp GSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSS-SSCGGGSCGGGG
T ss_pred CCCCCCEEECCCCcCccC-ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecC-cccccccCcccc
Confidence 566666666666655533 334556666777777776666655444432 256777777777 3432 344566
Q ss_pred hcCCCCcEEecccCc
Q 010711 442 SGLTGLVSLNVSNSR 456 (503)
Q Consensus 442 ~~l~~L~~L~l~~~~ 456 (503)
..+++++.+++++|+
T Consensus 316 ~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 316 RCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTCCCGGGEEC----
T ss_pred ccccceeEEEecccC
Confidence 777778888777763
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=7.6e-27 Score=215.91 Aligned_cols=288 Identities=18% Similarity=0.194 Sum_probs=196.2
Q ss_pred CCcEEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEc
Q 010711 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211 (503)
Q Consensus 132 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 211 (503)
++++++++++. +...|..+ .+.+++|+++++. +....+..+..+++|++|+++++.+....+..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~-l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLG-LKAVPKEI--SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSC-CSSCCSCC--CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCC-ccccCCCC--CCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 79999999853 55555544 3689999999865 55556678899999999999999999877888999999999999
Q ss_pred CCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCCh--HHHHHhhCCCCCCEEEccCCCCC
Q 010711 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIG 289 (503)
Q Consensus 212 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~ 289 (503)
++|.+... +..+. ++|++|++++|.+....+..+..+++|+.|++++|.+.. ..+..+..+ +|+.|++++|.++
T Consensus 110 ~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLVEI-PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCCSC-CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCCcc-Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 99988743 22222 799999999999987777778999999999999998864 223334444 7777777777655
Q ss_pred hhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhc
Q 010711 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 369 (503)
Q Consensus 290 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 369 (503)
..+. . -.++ |+.|++++|.+....+..+..+++|++|++++|.+.+..+..+.
T Consensus 186 ~l~~-~--~~~~------------------------L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 186 GIPK-D--LPET------------------------LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp SCCS-S--SCSS------------------------CSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred ccCc-c--ccCC------------------------CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence 3211 1 1134 44444444444443333444555666666666665554444555
Q ss_pred CCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhc------CCCCceeeccCCCCCC--hhhHHHH
Q 010711 370 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD------LSSLTLLNLSQNCNLT--DKTLELI 441 (503)
Q Consensus 370 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~l~--~~~~~~~ 441 (503)
.+++|+.|++++|.+... +..+..+++|+.|++++|.+++.....+.. .+.|+.|++++| .+. ...+..+
T Consensus 239 ~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N-~~~~~~~~~~~~ 316 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLSRV-PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN-PVPYWEVQPATF 316 (332)
T ss_dssp GCTTCCEEECCSSCCCBC-CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSS-SSCGGGSCGGGG
T ss_pred CCCCCCEEECCCCcCeec-ChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecC-cccccccCcccc
Confidence 666666666666666643 334566777777777777776655555443 256777888777 444 3455667
Q ss_pred hcCCCCcEEecccCc
Q 010711 442 SGLTGLVSLNVSNSR 456 (503)
Q Consensus 442 ~~l~~L~~L~l~~~~ 456 (503)
..+++|+.+++++|+
T Consensus 317 ~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 317 RCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTBCCSTTEEC----
T ss_pred cccchhhhhhccccc
Confidence 777888888887764
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=6.2e-28 Score=220.60 Aligned_cols=248 Identities=19% Similarity=0.188 Sum_probs=155.9
Q ss_pred CCCEEEcCCCCCcH--HHHHHhhCCCCCCEEEccC-CCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEE
Q 010711 205 KLTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281 (503)
Q Consensus 205 ~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 281 (503)
+++.|+++++.+.. ..+..+..+++|++|++++ +.+....+..+..+++|++|++++|.+.+..+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p------------ 118 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP------------ 118 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC------------
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC------------
Confidence 45556666555543 3344455555555555553 44444444445555555555555554443333
Q ss_pred EccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCC-CCCEeecCCCCC
Q 010711 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS-SLKSLNLDARQI 360 (503)
Q Consensus 282 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~ 360 (503)
..+..+++|++|++++|.+....+..+..+++|++|++++|.++...+..+..++ +|++|++++|.+
T Consensus 119 ------------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 119 ------------DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp ------------GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred ------------HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 3444455555555555544433344455555566666665555433444455555 677777777766
Q ss_pred CHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHH
Q 010711 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440 (503)
Q Consensus 361 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 440 (503)
++..+..+..++ |+.|++++|.+....+..+..+++|+.|++++|.+++..+. +..+++|++|++++| .+++..+..
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~p~~ 263 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNN-RIYGTLPQG 263 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSS-CCEECCCGG
T ss_pred eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCC-cccCcCChH
Confidence 655555566555 77788877777766666677778888888888877754443 666788888888888 777667777
Q ss_pred HhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCC
Q 010711 441 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480 (503)
Q Consensus 441 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 480 (503)
+..+++|+.|++++|+++...|.. ..+++|+.+++++|+
T Consensus 264 l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 264 LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp GGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred HhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 888888888888888887655544 678888888888886
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=4.6e-26 Score=212.56 Aligned_cols=254 Identities=19% Similarity=0.225 Sum_probs=165.6
Q ss_pred CCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecC
Q 010711 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308 (503)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 308 (503)
+|++|+++++.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.++......+..+++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 44455555444444333344445555555555554444333344455555555555555554444445556666666666
Q ss_pred CCccChhhH-HHhhCCCCCCeeeccCC-CCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccCh
Q 010711 309 DTQVGSSGL-RHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386 (503)
Q Consensus 309 ~~~~~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 386 (503)
+|.+..... ..+..+++|+.|++++| .+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 665554332 34556677777777766 3554444556677888888888887777666777788888888888888877
Q ss_pred HHHHHHhcCCCCCeEEecCCCCChhHHHhh---hcCCCCceeeccCCCCCChh----hHHHHhcCCCCcEEecccCccch
Q 010711 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHI---KDLSSLTLLNLSQNCNLTDK----TLELISGLTGLVSLNVSNSRITS 459 (503)
Q Consensus 387 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~~~----~~~~~~~l~~L~~L~l~~~~~~~ 459 (503)
.+...+..+++|+.|++++|.+++.....+ ...+.++.++++++ .+... .+..+.++++|+.|++++|.++.
T Consensus 213 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 291 (353)
T 2z80_A 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRNQLKS 291 (353)
T ss_dssp HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence 766666778888888888888776433222 23567788888887 66653 34567788999999999998887
Q ss_pred hhHhhccCCcccceEEeccCCCCH
Q 010711 460 AGLRHLKPLKNLRSLTLESCKVTA 483 (503)
Q Consensus 460 ~~~~~l~~~~~L~~L~l~~~~~~~ 483 (503)
++...+..+++|++|++++|+++.
T Consensus 292 i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 292 VPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCHHHHhcCCCCCEEEeeCCCccC
Confidence 665556788999999999998764
No 53
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=5.9e-27 Score=214.12 Aligned_cols=248 Identities=17% Similarity=0.190 Sum_probs=140.0
Q ss_pred CCCCEEEeecccCCc--hhHHhhhcCCCCCEEEcCC-CCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCE
Q 010711 180 TNLKSLQISCSKVTD--SGIAYLKGLQKLTLLNLEG-CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256 (503)
Q Consensus 180 ~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 256 (503)
.+++.|+++++.+.+ ..+..+..+++|++|++++ +.+....+..+..+++|++|++++|.+....+..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 456666666666655 4455666666777777763 5554444555667777777777777776556666777777777
Q ss_pred EEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCC-CCCEEecCCCccChhhHHHhhCCCCCCeeeccCCC
Q 010711 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335 (503)
Q Consensus 257 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 335 (503)
|++++|.+....+..+..+++|++|++++|.+.+..+..+..++ +|++|++++|.+....+..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 77777766655555566677777777777766544455555565 667777766665544344444443 5555555554
Q ss_pred CChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHh
Q 010711 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415 (503)
Q Consensus 336 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 415 (503)
++...+..+..+++|+.|++++|.++...+. +..+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 4433334444555555555555555432222 334455555555555544333444444555555555555444333222
Q ss_pred hhcCCCCceeeccCC
Q 010711 416 IKDLSSLTLLNLSQN 430 (503)
Q Consensus 416 ~~~~~~L~~L~l~~~ 430 (503)
..+++|+.+++++|
T Consensus 288 -~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 288 -GNLQRFDVSAYANN 301 (313)
T ss_dssp -TTGGGSCGGGTCSS
T ss_pred -ccccccChHHhcCC
Confidence 33444444444444
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=3.1e-25 Score=207.01 Aligned_cols=258 Identities=22% Similarity=0.196 Sum_probs=151.7
Q ss_pred CCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEc
Q 010711 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259 (503)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 259 (503)
++|++|+++++.+.......+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 47788888877777665556777777788887777776654555667777777777777776655555667777777777
Q ss_pred cCCCCChHHH-HHhhCCCCCCEEEccCC-CCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCC
Q 010711 260 GFNEITDECL-VHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337 (503)
Q Consensus 260 ~~~~~~~~~~-~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 337 (503)
++|.+..... ..+..+++|+.|++++| .+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 7776653322 24556667777777666 344444445556666666666666655544455555566666666666555
Q ss_pred hHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChh----HH
Q 010711 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA----GV 413 (503)
Q Consensus 338 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~ 413 (503)
......+..+++|++|++++|.+++..+..+. .....+.++.++++++.+.+. .+
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~---------------------~~~~~~~l~~l~L~~~~l~~~~l~~l~ 270 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELS---------------------TGETNSLIKKFTFRNVKITDESLFQVM 270 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC---------------------------CCCCCCEEEEESCBCCHHHHHHHH
T ss_pred cchhhhhhhcccccEEECCCCccccccccccc---------------------cccccchhhccccccccccCcchhhhH
Confidence 44444444455666666665555442211111 112234455555555555442 22
Q ss_pred HhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccch
Q 010711 414 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459 (503)
Q Consensus 414 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~ 459 (503)
..+..+++|+.|++++| .++..+...+.++++|+.|++++|++..
T Consensus 271 ~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 271 KLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp HHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred HHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 33455566666666666 5554444444566666666666666554
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=1.4e-24 Score=208.65 Aligned_cols=246 Identities=23% Similarity=0.248 Sum_probs=144.8
Q ss_pred CCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccC
Q 010711 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285 (503)
Q Consensus 206 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 285 (503)
...++..+..+... |..+ .++++.|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 45 ~~~v~c~~~~l~~i-P~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREV-PDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSC-CSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcC-CCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 44566666555432 2222 25778888888887776667777778888888887777765556667777777777777
Q ss_pred CCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCC-CCChHHHHHHhCCCCCCEeecCCCCCCHhH
Q 010711 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDTG 364 (503)
Q Consensus 286 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 364 (503)
|.++......+..+++|++|++++|.+.......+..+++|+.|+++++ .+.......+.++++|++|++++|.++..
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI- 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-
Confidence 7776555555666777777777777666555555666666666666653 33332233445556666666666655542
Q ss_pred HHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcC
Q 010711 365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 444 (503)
Q Consensus 365 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l 444 (503)
..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+++..+..|..+++|+.|+|++| .++...+..+..+
T Consensus 201 -~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l 278 (440)
T 3zyj_A 201 -PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPL 278 (440)
T ss_dssp -CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSC
T ss_pred -cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccc
Confidence 12444555555555555555544444555555555555555555544444555555555555555 4444444444455
Q ss_pred CCCcEEecccCcc
Q 010711 445 TGLVSLNVSNSRI 457 (503)
Q Consensus 445 ~~L~~L~l~~~~~ 457 (503)
++|+.|++++|++
T Consensus 279 ~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 279 HHLERIHLHHNPW 291 (440)
T ss_dssp TTCCEEECCSSCE
T ss_pred cCCCEEEcCCCCc
Confidence 5555555555443
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=1.7e-24 Score=208.82 Aligned_cols=226 Identities=25% Similarity=0.296 Sum_probs=131.3
Q ss_pred CCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEec
Q 010711 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307 (503)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 307 (503)
++++.|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 47888888888887766777778888888888888777655566677777888888777776655555666777777777
Q ss_pred CCCccChhhHHHhhCCCCCCeeeccCC-CCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccCh
Q 010711 308 SDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386 (503)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 386 (503)
++|.+.......+..+++|+.|+++++ .+.......+..+++|++|++++|.+++. ..+..+++|+.|++++|.+..
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCcc
Confidence 777666554455566666666666653 33332223344555555555555555442 223344455555555554444
Q ss_pred HHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCc
Q 010711 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456 (503)
Q Consensus 387 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 456 (503)
..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++| .++...+..+..+++|+.|++++|+
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 44444444444555555444444444444444444444444444 4444333344444444444444443
No 57
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=1.6e-22 Score=190.96 Aligned_cols=257 Identities=19% Similarity=0.195 Sum_probs=153.9
Q ss_pred HHhhCCCCCCEEEccCCCCChhhhHh----hhcCCCCCEEEccCCCCC---hHHHH-------HhhCCCCCCEEEccCCC
Q 010711 222 DSLSALGSLFYLNLNRCQLSDDGCEK----FSKIGSLKVLNLGFNEIT---DECLV-------HLKGLTNLESLNLDSCG 287 (503)
Q Consensus 222 ~~l~~l~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~---~~~~~-------~l~~~~~L~~L~l~~~~ 287 (503)
..+..+++|++|++++|.+....+.. +..+++|+.|+++++.+. +..+. .+..+++|++|++++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 34566778888888888877654443 456788888888775332 22222 23567788888888877
Q ss_pred CCh----hHHHHHhcCCCCCEEecCCCccChhhHHHhh----CC---------CCCCeeeccCCCCChHH-H---HHHhC
Q 010711 288 IGD----EGLVNLTGLCNLKCLELSDTQVGSSGLRHLS----GL---------TNLESINLSFTGISDGS-L---RKLAG 346 (503)
Q Consensus 288 ~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~----~~---------~~L~~L~l~~~~~~~~~-~---~~~~~ 346 (503)
++. ..+..+..+++|++|++++|.+.......+. .+ ++|++|++++|.+++.. + ..+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 765 3455666777788888877777544333322 22 67777777777665322 2 24556
Q ss_pred CCCCCEeecCCCCCCHhH----HH-hhcCCCCCCEEEccCCccC----hHHHHHHhcCCCCCeEEecCCCCChhHHH---
Q 010711 347 LSSLKSLNLDARQITDTG----LA-ALTSLTGLTHLDLFGARIT----DSGAAYLRNFKNLRSLEICGGGLTDAGVK--- 414 (503)
Q Consensus 347 ~~~L~~L~l~~~~~~~~~----~~-~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--- 414 (503)
+++|++|++++|.++..+ .. .+..+++|+.|++++|.++ ...+..+..+++|++|++++|.+++.+..
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 677777777777776432 12 4556677777777777665 22344556666777777777766665332
Q ss_pred -hhh--cCCCCceeeccCCCCCCh----hhHHHH-hcCCCCcEEecccCccchhhH--hhc-cCCcccceEEeccC
Q 010711 415 -HIK--DLSSLTLLNLSQNCNLTD----KTLELI-SGLTGLVSLNVSNSRITSAGL--RHL-KPLKNLRSLTLESC 479 (503)
Q Consensus 415 -~~~--~~~~L~~L~l~~~~~l~~----~~~~~~-~~l~~L~~L~l~~~~~~~~~~--~~l-~~~~~L~~L~l~~~ 479 (503)
.+. .+++|+.|++++| .++. ..+..+ .++++|+.|++++|+++...+ ..+ ..++.++.+++...
T Consensus 266 ~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp HHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred HHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhhc
Confidence 222 2566677777666 5555 233333 446666666666666665442 222 22444444555443
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=6.7e-25 Score=200.54 Aligned_cols=230 Identities=22% Similarity=0.230 Sum_probs=124.8
Q ss_pred CCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHH--HHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEE
Q 010711 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC--LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305 (503)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 305 (503)
+++++|+++++.+.......+..+++|+.|++++|.+.... +..+..+++|+.|++++|.+... +..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEE-EEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccC-hhhcCCCCCCCEE
Confidence 46666666666665444444556666666666666554221 22333455566666655544321 1123344555555
Q ss_pred ecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccC
Q 010711 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385 (503)
Q Consensus 306 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 385 (503)
++++|.+..... ...+..+++|++|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 107 ~l~~n~l~~~~~-----------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 107 DFQHSNLKQMSE-----------------------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp ECTTSEEESSTT-----------------------TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred ECCCCccccccc-----------------------chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 555544433221 023444555555555555554444444555556666666665554
Q ss_pred h-HHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhh
Q 010711 386 D-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464 (503)
Q Consensus 386 ~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 464 (503)
. ..+..+..+++|++|++++|.+++..+..+..+++|+.|++++| .++...+..+..+++|+.|++++|++....+..
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 3 22334455666666666666666555555566666666666666 555554445556666666666666666655555
Q ss_pred ccCCc-ccceEEeccCCCC
Q 010711 465 LKPLK-NLRSLTLESCKVT 482 (503)
Q Consensus 465 l~~~~-~L~~L~l~~~~~~ 482 (503)
+..++ +|++|++++|+++
T Consensus 243 ~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCCCCTTCCEEECTTCCEE
T ss_pred HHhhhccCCEEEccCCCee
Confidence 55553 6666666666654
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=3.3e-24 Score=193.74 Aligned_cols=224 Identities=23% Similarity=0.249 Sum_probs=156.7
Q ss_pred CEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCC
Q 010711 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310 (503)
Q Consensus 231 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 310 (503)
+.++.++..+... |. ...++|+.|+++++.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~i-p~--~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSC-CT--TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccC-Cc--CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 4566666665543 22 22467888888888777655556677788888888888777665666777788888888877
Q ss_pred c-cChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHH
Q 010711 311 Q-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389 (503)
Q Consensus 311 ~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 389 (503)
. +.......+..+++|+.|++++|.++...+..+..+++|++|++++|.++...+..+..+++|+.|++++|.++..++
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 6 555545566677777777777777766555556677777777777777776555556677777777777777776655
Q ss_pred HHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccc
Q 010711 390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458 (503)
Q Consensus 390 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 458 (503)
..+..+++|++|++++|.+++..+..+..+++|+.|++++| .++...+..+..+++|+.|++++|++.
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCcc
Confidence 55666777777777777777666666677777777777777 666666666777777777777777655
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=1.2e-24 Score=196.69 Aligned_cols=268 Identities=20% Similarity=0.212 Sum_probs=194.2
Q ss_pred CEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCC
Q 010711 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286 (503)
Q Consensus 207 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 286 (503)
+.++.++..+... +. .-.+++++|+++++.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus 14 ~~~~c~~~~l~~i-p~--~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSC-CT--TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccC-Cc--CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 5567766665543 22 22468888999888888776677888888999999888887665667778888999999888
Q ss_pred C-CChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHH
Q 010711 287 G-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 365 (503)
Q Consensus 287 ~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 365 (503)
. +....+..+..+++|++|++++|.+.......+..+++|+.|++++|.+....+..+..+++|++|++++|.++....
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 6 666656677788889999998888877666677788889999998888876555567788889999998888887666
Q ss_pred HhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCC
Q 010711 366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 445 (503)
Q Consensus 366 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~ 445 (503)
..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+-........+. .
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~--~ 248 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW--A 248 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHH--H
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHH--H
Confidence 66778888999999888888777777888888999999988888877777888888999999888322222221111 1
Q ss_pred CCcEEecccCccchhhHhhccC--CcccceEEeccC
Q 010711 446 GLVSLNVSNSRITSAGLRHLKP--LKNLRSLTLESC 479 (503)
Q Consensus 446 ~L~~L~l~~~~~~~~~~~~l~~--~~~L~~L~l~~~ 479 (503)
.++.+..+.+.+.-..|+.+.+ +..++..++.||
T Consensus 249 ~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 249 WLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp HHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred HHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 1233334445444444444432 445555556665
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=7.7e-25 Score=200.71 Aligned_cols=254 Identities=17% Similarity=0.195 Sum_probs=133.2
Q ss_pred EeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCC
Q 010711 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265 (503)
Q Consensus 186 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 265 (503)
+++.+.+.......+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+ +..+++|++|++++|.+.
T Consensus 16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~ 93 (317)
T 3o53_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ 93 (317)
T ss_dssp SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE
T ss_pred eccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc
Confidence 334444433333344455667777777776666555566677777777777776654332 566666777777666554
Q ss_pred hHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHH-
Q 010711 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL- 344 (503)
Q Consensus 266 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~- 344 (503)
+ +...++|+.|++++|.+....+ ..+++|++|++++|.+.......+..+++|+.|++++|.+....+..+
T Consensus 94 ~-----l~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 165 (317)
T 3o53_A 94 E-----LLVGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (317)
T ss_dssp E-----EEECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred c-----ccCCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh
Confidence 3 2233566666666665554322 124556666666665555444444455555555555555554333333
Q ss_pred hCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCce
Q 010711 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424 (503)
Q Consensus 345 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 424 (503)
..+++|++|++++|.++.. .....+++|+.|++++|.+...++. +..+++|+.|++++|.++.. +..+..+++|+.
T Consensus 166 ~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l-~~~~~~l~~L~~ 241 (317)
T 3o53_A 166 ASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI-EKALRFSQNLEH 241 (317)
T ss_dssp GGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCE
T ss_pred hccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccch-hhHhhcCCCCCE
Confidence 2445555555555555543 1122345555555555555543322 44455555555555555432 233444455555
Q ss_pred eeccCCCCCC-hhhHHHHhcCCCCcEEeccc
Q 010711 425 LNLSQNCNLT-DKTLELISGLTGLVSLNVSN 454 (503)
Q Consensus 425 L~l~~~~~l~-~~~~~~~~~l~~L~~L~l~~ 454 (503)
|++++| .+. ...+..+..+++|+.+++++
T Consensus 242 L~l~~N-~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 242 FDLRGN-GFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp EECTTC-CCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred EEccCC-CccCcCHHHHHhccccceEEECCC
Confidence 555555 333 33444445555555555543
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=4.8e-24 Score=205.74 Aligned_cols=226 Identities=21% Similarity=0.216 Sum_probs=195.2
Q ss_pred CCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEc
Q 010711 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283 (503)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 283 (503)
++++.|++++|.+....+..+..+++|+.|++++|.+....+..|..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 58999999999988776677889999999999999998877788889999999999999888666666788999999999
Q ss_pred cCCCCChhHHHHHhcCCCCCEEecCCC-ccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCH
Q 010711 284 DSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362 (503)
Q Consensus 284 ~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 362 (503)
++|.+.......+..+++|++|+++++ .+.......+..+++|+.|++++|.++.. ..+..+++|++|++++|.+++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCcc
Confidence 999888777777888999999999984 44444445678889999999999988764 246678999999999999998
Q ss_pred hHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCC
Q 010711 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431 (503)
Q Consensus 363 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 431 (503)
..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++......+..+++|+.|++++|+
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 878888999999999999999988878888899999999999999988777778889999999999984
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=5.3e-24 Score=204.69 Aligned_cols=226 Identities=21% Similarity=0.240 Sum_probs=198.0
Q ss_pred CCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEc
Q 010711 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283 (503)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 283 (503)
++++.|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.+.......+..+++|+.|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 67999999999988776678889999999999999999887888999999999999999888666666888999999999
Q ss_pred cCCCCChhHHHHHhcCCCCCEEecCCC-ccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCH
Q 010711 284 DSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362 (503)
Q Consensus 284 ~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 362 (503)
++|.+.......+..+++|++|+++++ .+.......+..+++|+.|++++|.++... .+..+++|++|++++|.++.
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCccCc
Confidence 999988777778889999999999984 344444556788999999999999887532 36778999999999999998
Q ss_pred hHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCC
Q 010711 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431 (503)
Q Consensus 363 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 431 (503)
..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++......+..+++|+.|++++|+
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 878888999999999999999998888888899999999999999998877888889999999999984
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=1.1e-24 Score=199.58 Aligned_cols=260 Identities=17% Similarity=0.164 Sum_probs=180.9
Q ss_pred CCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEcc
Q 010711 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284 (503)
Q Consensus 205 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 284 (503)
.++..+++.+.+.......+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+ +..+++|+.|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 34556666666655544555667789999999998888777788888899999998888765433 6778888888888
Q ss_pred CCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhH
Q 010711 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364 (503)
Q Consensus 285 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 364 (503)
+|.+++. ...++|++|++++|.+..... ..+++|+.|++++|.++...+..+..+++|++|++++|.++...
T Consensus 89 ~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQEL-----LVGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEEE-----EECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCccccc-----cCCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 8866542 245788888888887765432 23567788888877777655555666777788888777777655
Q ss_pred HHhh-cCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhc
Q 010711 365 LAAL-TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443 (503)
Q Consensus 365 ~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 443 (503)
+..+ ..+++|+.|++++|.++..+ ....+++|++|++++|.+++..+ .+..+++|+.|++++| .++.. +..+..
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N-~l~~l-~~~~~~ 235 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNN-KLVLI-EKALRF 235 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTS-CCCEE-CTTCCC
T ss_pred HHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCC-cccch-hhHhhc
Confidence 5444 35677777777777776542 22246777777777777776533 3666777777777777 66653 345666
Q ss_pred CCCCcEEecccCccc-hhhHhhccCCcccceEEeccC
Q 010711 444 LTGLVSLNVSNSRIT-SAGLRHLKPLKNLRSLTLESC 479 (503)
Q Consensus 444 l~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~ 479 (503)
+++|+.|++++|++. ...+..+..+++|+.+++++|
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 777777777777776 445566667777777776644
No 65
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=8.2e-22 Score=182.78 Aligned_cols=222 Identities=18% Similarity=0.191 Sum_probs=109.6
Q ss_pred CCCEEEcCCCCCcHHHHHHhhCC--CCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChH-HHHHhhCCCCCCEE
Q 010711 205 KLTLLNLEGCPVTAACLDSLSAL--GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE-CLVHLKGLTNLESL 281 (503)
Q Consensus 205 ~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L 281 (503)
.++.++++++.+.. ..+..+ ++++.+++.++.+....+. +..+++|+.|++++|.+... .+..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCCH---HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 46677777766653 223333 5677777776665543322 33456666666666655543 44445556666666
Q ss_pred EccCCCCChhHHHHHhcCCCCCEEecCCC-ccChh-hHHHhhCCCCCCeeeccCC-CCChH-HHHHHhCCC-CCCEeecC
Q 010711 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSS-GLRHLSGLTNLESINLSFT-GISDG-SLRKLAGLS-SLKSLNLD 356 (503)
Q Consensus 282 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~ 356 (503)
++++|.+++..+..+..+++|++|++++| .+.+. ....+..+++|++|++++| .+++. .+..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 66666655555555555556666666555 34432 2223444555555555555 44443 233344444 55555555
Q ss_pred CC--CCCH-hHHHhhcCCCCCCEEEccCCc-cChHHHHHHhcCCCCCeEEecCC-CCChhHHHhhhcCCCCceeeccCC
Q 010711 357 AR--QITD-TGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQN 430 (503)
Q Consensus 357 ~~--~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~ 430 (503)
+| .+++ ..+..+..+++|+.|++++|. +++..+..+..+++|++|++++| .+.+.....+..+++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 54 3332 122233344444444444444 33333334444444444444444 233332333444444444444444
No 66
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1.4e-21 Score=184.49 Aligned_cols=256 Identities=18% Similarity=0.192 Sum_probs=172.8
Q ss_pred HhhhcCCCCCEEEcCCCCCcHHHHHH----hhCCCCCCEEEccCCCCC---hhhhH-------hhhcCCCCCEEEccCCC
Q 010711 198 AYLKGLQKLTLLNLEGCPVTAACLDS----LSALGSLFYLNLNRCQLS---DDGCE-------KFSKIGSLKVLNLGFNE 263 (503)
Q Consensus 198 ~~l~~~~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~~---~~~~~-------~l~~~~~L~~L~l~~~~ 263 (503)
..+..+++|+.|++++|.+....+.. +..+++|++|++++|.+. ...+. .+..+++|++|++++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 44567788888888888777654433 556788888888876443 22222 23567888888888887
Q ss_pred CCh----HHHHHhhCCCCCCEEEccCCCCChhHHHHHhc----C---------CCCCEEecCCCccChhhH----HHhhC
Q 010711 264 ITD----ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG----L---------CNLKCLELSDTQVGSSGL----RHLSG 322 (503)
Q Consensus 264 ~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~----~---------~~L~~L~l~~~~~~~~~~----~~~~~ 322 (503)
+.. ..+..+..+++|+.|++++|.++...+..+.. + ++|++|++++|.+..... ..+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 776 35556677888888888888776554444332 3 788888888888764322 34566
Q ss_pred CCCCCeeeccCCCCChHH----HH-HHhCCCCCCEeecCCCCCC----HhHHHhhcCCCCCCEEEccCCccChHH----H
Q 010711 323 LTNLESINLSFTGISDGS----LR-KLAGLSSLKSLNLDARQIT----DTGLAALTSLTGLTHLDLFGARITDSG----A 389 (503)
Q Consensus 323 ~~~L~~L~l~~~~~~~~~----~~-~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~----~ 389 (503)
+++|+.|++++|.+.+.. .. .+..+++|++|++++|.++ ...+..+..+++|+.|++++|.+.... +
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 788888888888887542 22 4557788888888888886 333456677888888888888887763 3
Q ss_pred HHHhc--CCCCCeEEecCCCCChh----HHHhh-hcCCCCceeeccCCCCCChhhH--HHH-hcCCCCcEEeccc
Q 010711 390 AYLRN--FKNLRSLEICGGGLTDA----GVKHI-KDLSSLTLLNLSQNCNLTDKTL--ELI-SGLTGLVSLNVSN 454 (503)
Q Consensus 390 ~~~~~--~~~L~~L~l~~~~~~~~----~~~~~-~~~~~L~~L~l~~~~~l~~~~~--~~~-~~l~~L~~L~l~~ 454 (503)
..+.. +++|+.|++++|.+++. .+..+ .++++|+.|++++| .++...+ ..+ ..+++++.+++..
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N-~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN-RFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC-cCCcchhHHHHHHHHhhhcCcchhhh
Confidence 34433 78888888888888773 34444 55788888888888 6665542 222 2345555555544
No 67
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.7e-21 Score=180.71 Aligned_cols=251 Identities=20% Similarity=0.203 Sum_probs=191.8
Q ss_pred CCCCEEEccCCCCChhhhHhhhcC--CCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChh-HHHHHhcCCCCCE
Q 010711 228 GSLFYLNLNRCQLSDDGCEKFSKI--GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE-GLVNLTGLCNLKC 304 (503)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~ 304 (503)
..++.++++++.+.. ..+..+ +.++.++++++.+.+..+. +..+++|+.|++++|.+.+. .+..+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCCH---HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 348899999887763 344444 7899999998876654333 45678999999999988765 6667788899999
Q ss_pred EecCCCccChhhHHHhhCCCCCCeeeccCC-CCChH-HHHHHhCCCCCCEeecCCC-CCCHhH-HHhhcCCC-CCCEEEc
Q 010711 305 LELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDG-SLRKLAGLSSLKSLNLDAR-QITDTG-LAALTSLT-GLTHLDL 379 (503)
Q Consensus 305 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~~-~~~~~~~~-~L~~L~l 379 (503)
|++++|.+.+.....+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++.. +..+..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 999999888777778888999999999998 67764 4455778899999999998 888753 45567888 9999999
Q ss_pred cCC--ccC-hHHHHHHhcCCCCCeEEecCCC-CChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccC
Q 010711 380 FGA--RIT-DSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 455 (503)
Q Consensus 380 ~~~--~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~ 455 (503)
++| .++ ...+..+..+++|++|++++|. +++..+..+..+++|+.|++++|..+.......+.++++|+.|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 998 555 3345566789999999999988 777777788888999999999986565555556778999999999988
Q ss_pred ccchhhHhhccCCcccceEEeccCCCCHHH
Q 010711 456 RITSAGLRHLKPLKNLRSLTLESCKVTAND 485 (503)
Q Consensus 456 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 485 (503)
+.+.....+. ..+..|++++|.++...
T Consensus 283 -i~~~~~~~l~--~~l~~L~l~~n~l~~~~ 309 (336)
T 2ast_B 283 -VPDGTLQLLK--EALPHLQINCSHFTTIA 309 (336)
T ss_dssp -SCTTCHHHHH--HHSTTSEESCCCSCCTT
T ss_pred -cCHHHHHHHH--hhCcceEEecccCcccc
Confidence 5543333332 24666678888877643
No 68
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=2.3e-22 Score=187.85 Aligned_cols=251 Identities=19% Similarity=0.225 Sum_probs=144.9
Q ss_pred EEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhh----HhhhcCC-CCCEEEccCCCCChHHHHHhhCC-----CCC
Q 010711 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC----EKFSKIG-SLKVLNLGFNEITDECLVHLKGL-----TNL 278 (503)
Q Consensus 209 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~-----~~L 278 (503)
+.++++.+....+..+...++|++|++++|.+....+ ..+..++ +|++|++++|.+....+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5667777776655555555568888888887776555 5566676 78888888877765544443332 778
Q ss_pred CEEEccCCCCChhHHHH----HhcC-CCCCEEecCCCccChhhHHHh----hC-CCCCCeeeccCCCCChH----HHHHH
Q 010711 279 ESLNLDSCGIGDEGLVN----LTGL-CNLKCLELSDTQVGSSGLRHL----SG-LTNLESINLSFTGISDG----SLRKL 344 (503)
Q Consensus 279 ~~L~l~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~----~~~~~ 344 (503)
+.|++++|.+++..+.. +..+ ++|++|++++|.+.......+ .. +++|++|++++|.+++. ....+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 88888877766544443 3334 677777777777665444332 23 34677777777766532 22334
Q ss_pred hCCC-CCCEeecCCCCCCHhHHH----hhcCC-CCCCEEEccCCccChHH----HHHHhc-CCCCCeEEecCCCCChhHH
Q 010711 345 AGLS-SLKSLNLDARQITDTGLA----ALTSL-TGLTHLDLFGARITDSG----AAYLRN-FKNLRSLEICGGGLTDAGV 413 (503)
Q Consensus 345 ~~~~-~L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~~----~~~~~~-~~~L~~L~l~~~~~~~~~~ 413 (503)
...+ +|++|++++|.+++.++. .+..+ ++|+.|++++|.+.... +..+.. .++|++|++++|.+++.+.
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 4444 677777777666554432 23334 36666666666665521 223333 3466666666666655433
Q ss_pred H----hhhcCCCCceeeccCCCC---CChhhHH----HHhcCCCCcEEecccCccchh
Q 010711 414 K----HIKDLSSLTLLNLSQNCN---LTDKTLE----LISGLTGLVSLNVSNSRITSA 460 (503)
Q Consensus 414 ~----~~~~~~~L~~L~l~~~~~---l~~~~~~----~~~~l~~L~~L~l~~~~~~~~ 460 (503)
. .+..+++|+.|++++| . ++..... .+..+++|+.|++++|++...
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n-~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYD-IVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHH-HHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHhcCCCccEEEeccC-CccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 2 2234466666666666 3 2221111 233455566666666665543
No 69
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=6.6e-23 Score=187.32 Aligned_cols=246 Identities=23% Similarity=0.258 Sum_probs=138.1
Q ss_pred EEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHH--HHHHHhCCCCCcEEec
Q 010711 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ--GMKAFAGLINLVKLDL 138 (503)
Q Consensus 61 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~l~~L~~L~l 138 (503)
.++.++.+++. .+..+ .++|++|++++| .+.......|+++++|++|++++|.. ... .+..+..+++|++|++
T Consensus 11 ~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 11 EIRCNSKGLTS-VPTGI--PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGL-SFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp EEECCSSCCSS-CCSCC--CTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCC-CEEEEEEHHHHSCSCCCEEEC
T ss_pred EEEcCCCCccc-CCCCC--CCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCcc-CcccCcccccccccccCEEEC
Confidence 45555554442 22222 246666666665 44444444456666777777766642 211 1344455667777777
Q ss_pred cCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcH
Q 010711 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218 (503)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 218 (503)
++|. +...+..+..+++|++|+++++..........+..+++|++|+++++.+....+..+..+++|+.|++++|.+..
T Consensus 86 s~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 86 SFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 7643 334445566677777777776543222222455666777777777666655555556666677777777666543
Q ss_pred -HHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHh
Q 010711 219 -ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297 (503)
Q Consensus 219 -~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~ 297 (503)
..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.......+..+++|+.|++++|.+.+..+..+.
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 2334455666666666666666655555566666666666666655543333445555666666666655544444444
Q ss_pred cCC-CCCEEecCCCcc
Q 010711 298 GLC-NLKCLELSDTQV 312 (503)
Q Consensus 298 ~~~-~L~~L~l~~~~~ 312 (503)
.++ +|++|++++|.+
T Consensus 245 ~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CCCTTCCEEECTTCCE
T ss_pred hhhccCCEEEccCCCe
Confidence 442 555555555544
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=1.1e-24 Score=199.18 Aligned_cols=254 Identities=20% Similarity=0.159 Sum_probs=147.8
Q ss_pred hcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCCh-hhhHhh-------hcCCCCCEEEccCCCCChHHHHHh
Q 010711 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKF-------SKIGSLKVLNLGFNEITDECLVHL 272 (503)
Q Consensus 201 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l-------~~~~~L~~L~l~~~~~~~~~~~~l 272 (503)
+..++|+.++++++.+ ..+..+... ++.|+++++.+.. ..+..+ ..+++|++|++++|.+.+..+..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3345566666666665 222222221 4444444444321 111111 135556666666555544333322
Q ss_pred --hCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCC
Q 010711 273 --KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350 (503)
Q Consensus 273 --~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 350 (503)
..+++|+.|++++|.+.+. +..+..+ ....+++|++|++++|.+....+..++.+++|
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l-------------------~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L 175 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAEL-------------------QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHH-------------------HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHH-------------------HHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence 4455555555555544433 2222222 00011555555555555554444455566666
Q ss_pred CEeecCCCCCCHh--HHHhh--cCCCCCCEEEccCCccCh---HHHHHHhcCCCCCeEEecCCCCChhHH-HhhhcCCCC
Q 010711 351 KSLNLDARQITDT--GLAAL--TSLTGLTHLDLFGARITD---SGAAYLRNFKNLRSLEICGGGLTDAGV-KHIKDLSSL 422 (503)
Q Consensus 351 ~~L~l~~~~~~~~--~~~~~--~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L 422 (503)
++|++++|.+.+. .+..+ ..+++|+.|++++|.+.. .....+..+++|++|++++|.+++..+ ..+..+++|
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 255 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTC
T ss_pred CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCC
Confidence 6777766666543 12233 567778888888877773 333445677888888888888877542 344557889
Q ss_pred ceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCCHH
Q 010711 423 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 484 (503)
Q Consensus 423 ~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 484 (503)
+.|++++| .++.. +..+. ++|+.|++++|+++.. +. +..+++|++|++++|+++..
T Consensus 256 ~~L~Ls~N-~l~~i-p~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 256 NSLNLSFT-GLKQV-PKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CEEECTTS-CCSSC-CSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred CEEECCCC-ccChh-hhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 99999988 67743 33332 7899999999998887 33 77889999999999988754
No 71
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=9e-24 Score=194.10 Aligned_cols=236 Identities=17% Similarity=0.124 Sum_probs=170.9
Q ss_pred CCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEE
Q 010711 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305 (503)
Q Consensus 226 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 305 (503)
..++++.|+++++.+. ..+..+..+++|++|++++|.+. ..+..+..+++|++|++++|.+. ..+..+..+++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3467888888888877 34555667788888888888776 45555677778888888887766 334556677777777
Q ss_pred ecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccC
Q 010711 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385 (503)
Q Consensus 306 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 385 (503)
++++|......+..+ ....+. ..+..+++|++|++++|.++. .+..+..+++|+.|++++|.+.
T Consensus 156 ~L~~n~~~~~~p~~~------~~~~~~---------~~~~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPL------ASTDAS---------GEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCS------EEEC-C---------CCEEESTTCCEEEEEEECCCC-CCGGGGGCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhH------hhccch---------hhhccCCCCCEEECcCCCcCc-chHhhcCCCCCCEEEccCCCCC
Confidence 777654433222111 111111 113457788888888887773 3455777888888888888877
Q ss_pred hHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhc
Q 010711 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 465 (503)
Q Consensus 386 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 465 (503)
..+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++| .+....+..+.++++|+.|+|++|++....|..+
T Consensus 220 ~l~-~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n-~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 220 ALG-PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC-SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp CCC-GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTC-TTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred cCc-hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCC-CchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 653 35778888999999988887777777888899999999988 5666666678889999999999998888888888
Q ss_pred cCCcccceEEeccCCCC
Q 010711 466 KPLKNLRSLTLESCKVT 482 (503)
Q Consensus 466 ~~~~~L~~L~l~~~~~~ 482 (503)
..+++|+.+++..+.+.
T Consensus 298 ~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 298 AQLPANCIILVPPHLQA 314 (328)
T ss_dssp GGSCTTCEEECCGGGSC
T ss_pred hhccCceEEeCCHHHHH
Confidence 89999999988877543
No 72
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=1.3e-22 Score=186.36 Aligned_cols=222 Identities=20% Similarity=0.204 Sum_probs=125.2
Q ss_pred cCCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCc
Q 010711 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (503)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 134 (503)
..++++.|+++++.++ ..+..+.++++|++|++++| .+. ..+..++.+++|++|++++|.. . .+|..+.++++|+
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n-~l~-~lp~~~~~l~~L~~L~Ls~n~l-~-~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA-GLM-ELPDTMQQFAGLETLTLARNPL-R-ALPASIASLNRLR 153 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESS-CCC-CCCSCGGGGTTCSEEEEESCCC-C-CCCGGGGGCTTCC
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCC-Ccc-chhHHHhccCCCCEEECCCCcc-c-cCcHHHhcCcCCC
Confidence 3577888888888887 55666777888888888886 454 3455677788888888888763 3 5566777888888
Q ss_pred EEeccCcccccCccccccC---------CccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCC
Q 010711 135 KLDLERCTRIHGGLVNLKG---------LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205 (503)
Q Consensus 135 ~L~l~~~~~~~~~~~~~~~---------l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~ 205 (503)
+|++++|......+..+.. +++|++|++++|. +. ..+..+..+++|++|++++|.+... +..+..+++
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~-~lp~~l~~l~~L~~L~L~~N~l~~l-~~~l~~l~~ 230 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IR-SLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPK 230 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CC-CCCGGGGGCTTCCEEEEESSCCCCC-CGGGGGCTT
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cC-cchHhhcCCCCCCEEEccCCCCCcC-chhhccCCC
Confidence 8888877655555544432 5555555555533 22 2233444555555555555544432 223444455
Q ss_pred CCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEcc
Q 010711 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284 (503)
Q Consensus 206 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 284 (503)
|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..|..+..+++++.+.+.
T Consensus 231 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 5555555544433333334444444444444444444444444444444444444444443344444444444444443
No 73
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=4.2e-21 Score=179.36 Aligned_cols=252 Identities=18% Similarity=0.214 Sum_probs=195.6
Q ss_pred EEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHH----HHhhCCC-CCCEEEccCCCCChhHHHHHhcC-----CC
Q 010711 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL----VHLKGLT-NLESLNLDSCGIGDEGLVNLTGL-----CN 301 (503)
Q Consensus 232 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~-----~~ 301 (503)
.+.++.+.+....+..+...++|+.|++++|.+.+... ..+..++ +|+.|++++|.+++..+..+... ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35778888888777777777779999999998887655 6677888 89999999998887666666553 89
Q ss_pred CCEEecCCCccChhhHH----HhhCC-CCCCeeeccCCCCChHHHHHH----hC-CCCCCEeecCCCCCCHhHH----Hh
Q 010711 302 LKCLELSDTQVGSSGLR----HLSGL-TNLESINLSFTGISDGSLRKL----AG-LSSLKSLNLDARQITDTGL----AA 367 (503)
Q Consensus 302 L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~~----~~ 367 (503)
|++|++++|.+...... .+..+ ++|+.|++++|.+++..+..+ .. .++|++|++++|.+++.+. ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 99999999998765544 34555 899999999998877655444 34 3699999999999985443 44
Q ss_pred hcCCC-CCCEEEccCCccChHHHHH----HhcC-CCCCeEEecCCCCChhHH----Hhhhc-CCCCceeeccCCCCCChh
Q 010711 368 LTSLT-GLTHLDLFGARITDSGAAY----LRNF-KNLRSLEICGGGLTDAGV----KHIKD-LSSLTLLNLSQNCNLTDK 436 (503)
Q Consensus 368 ~~~~~-~L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~----~~~~~-~~~L~~L~l~~~~~l~~~ 436 (503)
+..++ +|++|++++|.++...+.. +..+ ++|++|++++|.+++.+. ..+.. .++|+.|++++| .++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~ 240 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGP 240 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcH
Confidence 45665 9999999999998766544 4455 599999999999987433 34444 469999999999 78775
Q ss_pred hHH----HHhcCCCCcEEecccCccchhh-------HhhccCCcccceEEeccCCCCHH
Q 010711 437 TLE----LISGLTGLVSLNVSNSRITSAG-------LRHLKPLKNLRSLTLESCKVTAN 484 (503)
Q Consensus 437 ~~~----~~~~l~~L~~L~l~~~~~~~~~-------~~~l~~~~~L~~L~l~~~~~~~~ 484 (503)
... .+..+++|+.|++++|.+..+. ...+..+++|+.|++++|++...
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 543 3456899999999999844332 23567788999999999998875
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=5.8e-23 Score=198.98 Aligned_cols=235 Identities=18% Similarity=0.170 Sum_probs=150.9
Q ss_pred CCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEec
Q 010711 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307 (503)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 307 (503)
++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++.. ..++|++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEEC
Confidence 478888888888887777778888888888888887765433 677788888888887665432 3467777777
Q ss_pred CCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhc-CCCCCCEEEccCCccCh
Q 010711 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITD 386 (503)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~ 386 (503)
++|.+..... ..+++|+.|++++|.++...+..+..+++|+.|++++|.+++..+..+. .+++|+.|++++|.++.
T Consensus 107 ~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 7777665432 2346677777777766665555556666777777777766665554443 56666777776666655
Q ss_pred HHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccc-hhhHhhc
Q 010711 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT-SAGLRHL 465 (503)
Q Consensus 387 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~l 465 (503)
.+ ....+++|+.|++++|.+++..+ .+..+++|+.|++++| .++.. |..+..+++|+.|++++|++. ...+..+
T Consensus 184 ~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N-~l~~l-p~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 184 VK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNN-KLVLI-EKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp EE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTS-CCCEE-CTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred cc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCC-cCccc-chhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 42 12246666666666666665433 2555666666666666 55542 334555666666666666665 3334455
Q ss_pred cCCcccceEEec
Q 010711 466 KPLKNLRSLTLE 477 (503)
Q Consensus 466 ~~~~~L~~L~l~ 477 (503)
..++.|+.+++.
T Consensus 259 ~~l~~L~~l~~~ 270 (487)
T 3oja_A 259 SKNQRVQTVAKQ 270 (487)
T ss_dssp TTCHHHHHHHHH
T ss_pred HhCCCCcEEecc
Confidence 556666655554
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=6.1e-23 Score=198.85 Aligned_cols=237 Identities=17% Similarity=0.202 Sum_probs=195.0
Q ss_pred cCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEE
Q 010711 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281 (503)
Q Consensus 202 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 281 (503)
.+++|+.|++++|.+....+..+..+++|++|++++|.+....+ +..+++|++|++++|.+.+ +...++|+.|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-----l~~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-----EEECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-----CCCCCCcCEE
Confidence 34489999999999887666788899999999999999876543 7889999999999998764 2345899999
Q ss_pred EccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHh-CCCCCCEeecCCCCC
Q 010711 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQI 360 (503)
Q Consensus 282 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~ 360 (503)
++++|.+....+ ..+++|+.|++++|.+....+..+..+++|+.|++++|.++...+..+. .+++|++|++++|.+
T Consensus 105 ~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 999998876543 2468899999999998887777778889999999999998876666665 689999999999999
Q ss_pred CHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCC-hhhHH
Q 010711 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT-DKTLE 439 (503)
Q Consensus 361 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~ 439 (503)
++. .....+++|+.|++++|.++..++. +..+++|+.|++++|.+++. +..+..+++|+.|++++| .+. ...+.
T Consensus 182 ~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N-~l~c~~~~~ 256 (487)
T 3oja_A 182 YDV--KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGN-GFHCGTLRD 256 (487)
T ss_dssp CEE--ECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTC-CBCHHHHHH
T ss_pred ccc--cccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCccc-chhhccCCCCCEEEcCCC-CCcCcchHH
Confidence 875 2344689999999999999886554 77899999999999999874 556778899999999999 566 56677
Q ss_pred HHhcCCCCcEEecc
Q 010711 440 LISGLTGLVSLNVS 453 (503)
Q Consensus 440 ~~~~l~~L~~L~l~ 453 (503)
.+..++.|+.++++
T Consensus 257 ~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 257 FFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHHhCCCCcEEecc
Confidence 78888888888886
No 76
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=4.4e-21 Score=189.42 Aligned_cols=266 Identities=20% Similarity=0.112 Sum_probs=194.4
Q ss_pred ccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEE
Q 010711 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234 (503)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 234 (503)
.+++.|+++++. ++. .+..+. ++|++|++++|.+..... .+++|+.|++++|.+.... . .+++|++|+
T Consensus 40 ~~l~~L~ls~n~-L~~-lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp-~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESG-LTT-LPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLP-V---LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSC-CSC-CCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCC-C---CCTTCCEEE
T ss_pred CCCcEEEecCCC-cCc-cChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCC-C---CCCCCCEEE
Confidence 468999999865 432 333333 799999999998874332 5789999999999886532 2 678999999
Q ss_pred ccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccCh
Q 010711 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314 (503)
Q Consensus 235 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 314 (503)
+++|.+..... .+++|+.|++++|.++.. + ..+++|++|++++|.+.... ..+++|+.|++++|.+..
T Consensus 108 Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~l-p---~~l~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 108 IFSNPLTHLPA----LPSGLCKLWIFGNQLTSL-P---VLPPGLQELSVSDNQLASLP----ALPSELCKLWAYNNQLTS 175 (622)
T ss_dssp ECSCCCCCCCC----CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC
T ss_pred CcCCcCCCCCC----CCCCcCEEECCCCCCCcC-C---CCCCCCCEEECcCCcCCCcC----CccCCCCEEECCCCCCCC
Confidence 99998876322 567899999999887752 1 23588999999998776532 145788899998888766
Q ss_pred hhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhc
Q 010711 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394 (503)
Q Consensus 315 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 394 (503)
.. ..+++|+.|++++|.++... ...++|+.|++++|.++... ..+++|+.|++++|.++..+ ..
T Consensus 176 l~----~~~~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L~~lp----~~ 239 (622)
T 3g06_A 176 LP----MLPSGLQELSVSDNQLASLP----TLPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLP----VL 239 (622)
T ss_dssp CC----CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCC----CC
T ss_pred Cc----ccCCCCcEEECCCCCCCCCC----CccchhhEEECcCCcccccC----CCCCCCCEEEccCCccCcCC----CC
Confidence 43 45678888888888776521 13578888888888877532 23578888888888877643 45
Q ss_pred CCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhcc
Q 010711 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 466 (503)
Q Consensus 395 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 466 (503)
+++|+.|++++|.++.... .+++|+.|++++| .++.+ |..+.++++|+.|++++|+++...+..+.
T Consensus 240 l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N-~L~~l-p~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 240 PSELKELMVSGNRLTSLPM----LPSGLLSLSVYRN-QLTRL-PESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS-CCCSC-CGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred CCcCcEEECCCCCCCcCCc----ccccCcEEeCCCC-CCCcC-CHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 6788888888888775432 4678888888888 77754 45677888888888888888877666543
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.85 E-value=1.1e-23 Score=192.50 Aligned_cols=254 Identities=19% Similarity=0.187 Sum_probs=153.4
Q ss_pred ccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcH-HHHH-------HhhCCCCCCEEEccCCCCChhhh
Q 010711 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-ACLD-------SLSALGSLFYLNLNRCQLSDDGC 245 (503)
Q Consensus 174 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~-------~l~~l~~L~~L~l~~~~~~~~~~ 245 (503)
..++..++|+++++.++.+ . .+..+... |+.|+++++.+.. ..+. .+..+++|++|++++|.+....+
T Consensus 37 ~~~~~~~~L~~l~l~~n~l-~-~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 37 ELYGGGRSLEYLLKRVDTE-A-DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEEEECTTHHHHCCTT-C-CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EEEccCCCceeEeeccccc-c-cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 4455667888888888877 2 23333322 7777777776532 1112 22368999999999999987666
Q ss_pred Hhh--hcCCCCCEEEccCCCCChHHHHHhhCC-----CCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhh--
Q 010711 246 EKF--SKIGSLKVLNLGFNEITDECLVHLKGL-----TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-- 316 (503)
Q Consensus 246 ~~l--~~~~~L~~L~l~~~~~~~~~~~~l~~~-----~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-- 316 (503)
..+ ..+++|+.|++++|.+.+. +..+..+ ++|++|++++|.+....+..+..+++|++|++++|.+.+..
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 191 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH
Confidence 665 7899999999999988765 3333333 78888888888777665566666677777777766654321
Q ss_pred HHHh--hCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHH-HHHh
Q 010711 317 LRHL--SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA-AYLR 393 (503)
Q Consensus 317 ~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~ 393 (503)
+..+ ..+++|+.|++++|.++... ......+..+++|+.|++++|.+....+ ..+.
T Consensus 192 ~~~~~~~~l~~L~~L~L~~N~l~~~~---------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 192 ISALCPLKFPTLQVLALRNAGMETPS---------------------GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp HHHSCTTSCTTCCEEECTTSCCCCHH---------------------HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred HHHHHhccCCCCCEEECCCCcCcchH---------------------HHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 1122 44555555555555554211 1111222344444455554444443221 1223
Q ss_pred cCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccch
Q 010711 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459 (503)
Q Consensus 394 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~ 459 (503)
.+++|++|++++|.++.. +..+. ++|+.|++++| .++.. +. +..+++|+.|++++|++++
T Consensus 251 ~l~~L~~L~Ls~N~l~~i-p~~~~--~~L~~L~Ls~N-~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLKQV-PKGLP--AKLSVLDLSYN-RLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCTTCCEEECTTSCCSSC-CSSCC--SEEEEEECCSS-CCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hcCCCCEEECCCCccChh-hhhcc--CCceEEECCCC-CCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 345666666666666532 22222 66777777777 66665 22 6677777777777777654
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=3.5e-22 Score=179.55 Aligned_cols=205 Identities=21% Similarity=0.241 Sum_probs=107.3
Q ss_pred CCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeec
Q 010711 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331 (503)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 331 (503)
++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.......+.
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---------- 97 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS---------- 97 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT----------
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc----------
Confidence 3566666666655544433455555666666666555544444444555555555555554443333344
Q ss_pred cCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHH-HHHHhcCCCCCeEEecCCCCCh
Q 010711 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG-AAYLRNFKNLRSLEICGGGLTD 410 (503)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~ 410 (503)
.+++|++|++++|.+.......+..+++|+.|++++|.+.... +..+..+++|++|++++|.+++
T Consensus 98 --------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 98 --------------GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp --------------TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred --------------CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence 4445555555554444433333445555555555555554421 3445555566666666665555
Q ss_pred hHHHhhhcCCCCc----eeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCC
Q 010711 411 AGVKHIKDLSSLT----LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482 (503)
Q Consensus 411 ~~~~~~~~~~~L~----~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 482 (503)
..+..+..+++|+ .|++++| .++...+..+. ..+|+.|++++|.++..++..+..+++|+.|++++|+++
T Consensus 164 ~~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 164 IYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp ECGGGGHHHHTCTTCCEEEECCSS-CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CCHHHhhhhhhccccceeeecCCC-cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 4444444444444 5566666 45544333332 235666666666666555555556666666666666554
No 79
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=1.1e-20 Score=186.72 Aligned_cols=268 Identities=21% Similarity=0.115 Sum_probs=212.2
Q ss_pred CCCcEEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEE
Q 010711 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210 (503)
Q Consensus 131 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 210 (503)
.++++|+++++. +...|..+. ++|++|++++|. ++... . .+++|++|++++|.++.... .+++|++|+
T Consensus 40 ~~l~~L~ls~n~-L~~lp~~l~--~~L~~L~L~~N~-l~~lp-~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESG-LTTLPDCLP--AHITTLVIPDNN-LTSLP-A---LPPELRTLEVSGNQLTSLPV----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSC-CSCCCSCCC--TTCSEEEECSCC-CSCCC-C---CCTTCCEEEECSCCCSCCCC----CCTTCCEEE
T ss_pred CCCcEEEecCCC-cCccChhhC--CCCcEEEecCCC-CCCCC-C---cCCCCCEEEcCCCcCCcCCC----CCCCCCEEE
Confidence 469999999854 556666554 799999999975 44322 2 57899999999998875332 678999999
Q ss_pred cCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCCh
Q 010711 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290 (503)
Q Consensus 211 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 290 (503)
+++|.+..... .+++|+.|++++|.+.... . .+++|+.|++++|.+.... ..+++|+.|.+++|.++.
T Consensus 108 Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp-~---~l~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 108 IFSNPLTHLPA----LPSGLCKLWIFGNQLTSLP-V---LPPGLQELSVSDNQLASLP----ALPSELCKLWAYNNQLTS 175 (622)
T ss_dssp ECSCCCCCCCC----CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC
T ss_pred CcCCcCCCCCC----CCCCcCEEECCCCCCCcCC-C---CCCCCCEEECcCCcCCCcC----CccCCCCEEECCCCCCCC
Confidence 99998876321 5689999999999887632 2 3589999999999887521 246789999999998876
Q ss_pred hHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcC
Q 010711 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 370 (503)
Q Consensus 291 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 370 (503)
.. ..+++|+.|++++|.+.... ...++|+.|.+.+|.++... ..+++|++|++++|.++..+ ..
T Consensus 176 l~----~~~~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L~~lp----~~ 239 (622)
T 3g06_A 176 LP----MLPSGLQELSVSDNQLASLP----TLPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLP----VL 239 (622)
T ss_dssp CC----CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCC----CC
T ss_pred Cc----ccCCCCcEEECCCCCCCCCC----CccchhhEEECcCCcccccC----CCCCCCCEEEccCCccCcCC----CC
Confidence 43 45789999999999887532 23578999999999887532 24589999999999998743 46
Q ss_pred CCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcC
Q 010711 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 444 (503)
Q Consensus 371 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l 444 (503)
+++|+.|++++|.++..+. .+++|+.|++++|.++.. +..+..+++|+.|++++| .++...+..+..+
T Consensus 240 l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~l-p~~l~~l~~L~~L~L~~N-~l~~~~~~~l~~L 307 (622)
T 3g06_A 240 PSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGN-PLSERTLQALREI 307 (622)
T ss_dssp CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSC-CGGGGGSCTTCEEECCSC-CCCHHHHHHHHHH
T ss_pred CCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcC-CHHHhhccccCEEEecCC-CCCCcCHHHHHhc
Confidence 7899999999999886543 578999999999999854 667889999999999999 7888888776644
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.84 E-value=8.3e-22 Score=176.19 Aligned_cols=201 Identities=17% Similarity=0.198 Sum_probs=102.6
Q ss_pred CCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeecc
Q 010711 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332 (503)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 332 (503)
..+.++++++.++. .+.. -.++++.|+++++.+....+..+..+++|++|+++++.+.......+..
T Consensus 17 ~~~~l~~~~~~l~~-ip~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~---------- 83 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSN--IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE---------- 83 (270)
T ss_dssp TTTEEECTTSCCSS-CCSC--CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSS----------
T ss_pred CCCEEEccCCCCCc-cCCC--CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcC----------
Confidence 35566666555543 1111 1245666666666555444444555555555555555544333333344
Q ss_pred CCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhH
Q 010711 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412 (503)
Q Consensus 333 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 412 (503)
+++|++|++++|.+....+..+..+++|+.|++++|.+...++..+..+++|++|++++|.+....
T Consensus 84 --------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 149 (270)
T 2o6q_A 84 --------------LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP 149 (270)
T ss_dssp --------------CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred --------------CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC
Confidence 444555555444444433334444555555555555554444444455555555555555555444
Q ss_pred HHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCC
Q 010711 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481 (503)
Q Consensus 413 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 481 (503)
...+..+++|+.|++++| .++...+..+.++++|+.|++++|.+....+..+..+++|+.|++++|++
T Consensus 150 ~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 150 KGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred HhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 444455555555555555 45554444455555555555555555555444455555566666655543
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=1.8e-21 Score=174.80 Aligned_cols=206 Identities=24% Similarity=0.202 Sum_probs=141.8
Q ss_pred CCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEec
Q 010711 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307 (503)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 307 (503)
+++++|+++++.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 47999999999998877778889999999999999988766667888999999999999998877778889999999999
Q ss_pred CCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChH
Q 010711 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387 (503)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 387 (503)
++|.+.......+..+++|+.|++++|.+.... .+..+..+++|+.|++++|.++..
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------------------l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFK-----------------------LPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC-----------------------CCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceec-----------------------CchhhccCCCCCEEECCCCCCCcC
Confidence 998876554434555566666666655544321 123344445555555555554443
Q ss_pred HHHHHhcCCCCC----eEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccc
Q 010711 388 GAAYLRNFKNLR----SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458 (503)
Q Consensus 388 ~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 458 (503)
.+..+..+++|+ .|++++|.+.+..+..+. ..+|+.|++++| .++..++..+..+++|+.|++++|++.
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCC-ceeecCHhHhcccccccEEEccCCccc
Confidence 333333333343 566666666654433333 236777777777 566655555666777777777777655
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.82 E-value=4.2e-21 Score=171.58 Aligned_cols=200 Identities=19% Similarity=0.223 Sum_probs=133.3
Q ss_pred CCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEec
Q 010711 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307 (503)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 307 (503)
.+.+.++++++.+... |..+ .++++.|+++++.+....+..+..+++|++|++++|.++......+..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~i-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAI-PSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCcc-CCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 3578899998888753 3322 368999999999988766667888999999999999888766667788999999999
Q ss_pred CCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChH
Q 010711 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387 (503)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 387 (503)
++|.+.......+..+++|+.|++++|.++...+..+..+++|++|++++|.++......+..+++|+.|++++|.+...
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 99988766555566677777777777766654444455566666666666665554444445555555555555555544
Q ss_pred HHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCC
Q 010711 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430 (503)
Q Consensus 388 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 430 (503)
++..+..+++|++|++++|.++......+..+++|+.|++++|
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence 4444444555555555555554443334444455555555544
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=6.6e-20 Score=166.83 Aligned_cols=195 Identities=28% Similarity=0.384 Sum_probs=150.6
Q ss_pred hcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCe
Q 010711 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328 (503)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 328 (503)
..+++|+.|+++++.+.... .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+... ..+..+++|+.
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 45678889999888776532 46778899999999888876554 77888899999988887664 35777888888
Q ss_pred eeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCC
Q 010711 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408 (503)
Q Consensus 329 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 408 (503)
|++++|.++... .+..+++|++|++++|.++...+ +..+++|+.|++++|.+....+ +..+++|+.|++++|.+
T Consensus 112 L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 888888877643 37788888888888888876543 6778888888888888776544 77788888888888888
Q ss_pred ChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchh
Q 010711 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460 (503)
Q Consensus 409 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~ 460 (503)
++..+ +..+++|+.|++++| .++... .+..+++|+.|++++|+++..
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N-~l~~~~--~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNN-QISDVS--PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTS-CCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred CcChh--hcCCCCCCEEEccCC-ccCccc--cccCCCCCCEEEccCCeeecC
Confidence 76543 677888888888888 677655 367788888888888887664
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.81 E-value=1.6e-20 Score=168.02 Aligned_cols=197 Identities=21% Similarity=0.207 Sum_probs=116.6
Q ss_pred CCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEe
Q 010711 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353 (503)
Q Consensus 274 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 353 (503)
.+++|+.|.+.++.+... ..+..+++|++|++++|.+... ..+..+++|++|++++|.++...+..+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 356677777777765532 2355667777777777666543 245566666666666666655444445566666666
Q ss_pred ecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCC
Q 010711 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433 (503)
Q Consensus 354 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 433 (503)
++++|.++...+..+..+++|+.|++++|.++..++..+..+++|+.|++++|.+++..+..+..+++|+.|++++| .+
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l 193 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN-QL 193 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC-cC
Confidence 66666666554444556666666666666666554444555666666666666666554444555666666666666 55
Q ss_pred ChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCC
Q 010711 434 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482 (503)
Q Consensus 434 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 482 (503)
+...+..+..+++|+.|++++|++.. .+++|+.+++..|.++
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~ 235 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHS 235 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTG
T ss_pred CccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCC
Confidence 55555555566666666666665442 3445555555554433
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=1e-20 Score=172.78 Aligned_cols=231 Identities=17% Similarity=0.077 Sum_probs=139.2
Q ss_pred CCCCEEEccCCCCChhhhHh---hhcCCCCCEEEccCCCCChHHHHHh--hCCCCCCEEEccCCCCChhHHHHHhcCCCC
Q 010711 228 GSLFYLNLNRCQLSDDGCEK---FSKIGSLKVLNLGFNEITDECLVHL--KGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302 (503)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~---l~~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 302 (503)
..++.+.+.++.+....... +..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+....+
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~--------- 134 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRS--------- 134 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTS---------
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhh---------
Confidence 34666666666554422211 1123446666666655544333333 445555555555554442100
Q ss_pred CEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHH----HhhcCCCCCCEEE
Q 010711 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL----AALTSLTGLTHLD 378 (503)
Q Consensus 303 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~ 378 (503)
......+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+... ..+..+++|++|+
T Consensus 135 -----------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~ 203 (310)
T 4glp_A 135 -----------WLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLA 203 (310)
T ss_dssp -----------SHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCB
T ss_pred -----------hhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEE
Confidence 0011222345555555555555554444445566667777777766554211 1124677788888
Q ss_pred ccCCccChHHHH---HHhcCCCCCeEEecCCCCChhHHHhhhcC---CCCceeeccCCCCCChhhHHHHhcCCCCcEEec
Q 010711 379 LFGARITDSGAA---YLRNFKNLRSLEICGGGLTDAGVKHIKDL---SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 452 (503)
Q Consensus 379 l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l 452 (503)
+++|.++..+.. .+..+++|++|++++|.+.+..+..+..+ ++|++|++++| .++.. +..+ .++|+.|++
T Consensus 204 Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~l-p~~~--~~~L~~L~L 279 (310)
T 4glp_A 204 LRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQV-PKGL--PAKLRVLDL 279 (310)
T ss_dssp CCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSC-CSCC--CSCCSCEEC
T ss_pred CCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCch-hhhh--cCCCCEEEC
Confidence 888877643322 34678888889998888887655555555 68999999998 77754 3333 378999999
Q ss_pred ccCccchhhHhhccCCcccceEEeccCCCCHH
Q 010711 453 SNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 484 (503)
Q Consensus 453 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 484 (503)
++|+++..+ .+..+++|+.|++++|+++..
T Consensus 280 s~N~l~~~~--~~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 280 SSNRLNRAP--QPDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp CSCCCCSCC--CTTSCCCCSCEECSSTTTSCC
T ss_pred CCCcCCCCc--hhhhCCCccEEECcCCCCCCC
Confidence 999988752 256789999999999988754
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=1e-20 Score=169.14 Aligned_cols=211 Identities=20% Similarity=0.196 Sum_probs=172.4
Q ss_pred hhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCC
Q 010711 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327 (503)
Q Consensus 248 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 327 (503)
...+++|+.|+++++.+... ..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.......+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 44678899999998877642 2467789999999999988764 3677889999999999988877666678889999
Q ss_pred eeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCC
Q 010711 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407 (503)
Q Consensus 328 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 407 (503)
.|++++|.++...+..+..+++|++|++++|.++...+..+..+++|+.|++++|.++..++..+..+++|++|++++|.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 99999998887666667888999999999999887766667889999999999999888777777889999999999999
Q ss_pred CChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcc
Q 010711 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 470 (503)
Q Consensus 408 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~ 470 (503)
+++..+..+..+++|+.|++++| .+. +.+++|+.++++.|.++...|..+..++.
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N-~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDN-PWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSS-CBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CCccCHHHHhCCcCCCEEEccCC-Ccc-------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 98877777888899999999998 343 35778899999988888776766655444
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=2.3e-20 Score=168.03 Aligned_cols=201 Identities=20% Similarity=0.154 Sum_probs=98.1
Q ss_pred hhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCC
Q 010711 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327 (503)
Q Consensus 248 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 327 (503)
++.+++++.++++++.++.. +.. -.++++.|++++|.++...+..+..+++|++|++++|.+..... ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~i-p~~--~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTAL-PPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSC-CSC--CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCcC-CCC--CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 34566777777777666532 111 12566777777776665555566666666777666666554322 13455555
Q ss_pred eeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCC
Q 010711 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407 (503)
Q Consensus 328 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 407 (503)
.|++++|.+... +..+..+++|++|++++|.++...+..|..+++|+.|++++|++...++..+..+++|+.|++++|.
T Consensus 81 ~L~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCCcC-chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 555555554421 1223344455555555554444333344444444444444444444433334444444444444444
Q ss_pred CChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCc
Q 010711 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456 (503)
Q Consensus 408 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 456 (503)
++......+..+++|+.|++++| .++.. +..+..+++|+.|++++|+
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N-~l~~i-p~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQEN-SLYTI-PKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCCCSEEECCSCC
T ss_pred CCccCHHHhcCcCCCCEEECCCC-cCCcc-ChhhcccccCCeEEeCCCC
Confidence 44433333344444444444444 33322 1222233344444444443
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=3.7e-19 Score=161.87 Aligned_cols=193 Identities=28% Similarity=0.399 Sum_probs=155.4
Q ss_pred CCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEE
Q 010711 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305 (503)
Q Consensus 226 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 305 (503)
.+++|+.|++.++.+... +.+..+++|+.|++++|.+....+ +..+++|+.|++++|.+.... .+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~l--~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccCc--hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch--hhcCCCCCCEE
Confidence 456889999998887753 357788999999999988876444 788899999999999877642 57788899999
Q ss_pred ecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccC
Q 010711 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385 (503)
Q Consensus 306 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 385 (503)
++++|.+.... .+..+++|+.|++++|.++...+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+.
T Consensus 113 ~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 113 DLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp ECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 99998887643 37888999999999998876443 7788999999999998887543 778899999999999888
Q ss_pred hHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCCh
Q 010711 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435 (503)
Q Consensus 386 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 435 (503)
...+ +..+++|++|++++|.+.+.. .+..+++|+.|++++| .++.
T Consensus 187 ~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N-~i~~ 231 (308)
T 1h6u_A 187 DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQ-TITN 231 (308)
T ss_dssp CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEE-EEEC
T ss_pred cChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCC-eeec
Confidence 7654 778899999999999888765 3778899999999988 4544
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=9e-21 Score=166.31 Aligned_cols=198 Identities=17% Similarity=0.170 Sum_probs=125.6
Q ss_pred CCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCc-cChhhHHHhhCCCCCCeeeccC-CCCChHHHHHHhCCCCCCEee
Q 010711 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLN 354 (503)
Q Consensus 277 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~ 354 (503)
+++.|+++++.++...+..+..+++|++|++++|. +.......+..+++|++|++++ +.++...+..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 44444444444444333344445555555555553 4433333445555666666655 555544444455666677777
Q ss_pred cCCCCCCHhHHHhhcCCCCCC---EEEccCC-ccChHHHHHHhcCCCCC-eEEecCCCCChhHHHhhhcCCCCceeeccC
Q 010711 355 LDARQITDTGLAALTSLTGLT---HLDLFGA-RITDSGAAYLRNFKNLR-SLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 429 (503)
Q Consensus 355 l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 429 (503)
+++|.++..+ .+..+++|+ .|++++| .+...++..+..+++|+ +|++++|.++......+.. ++|+.|++++
T Consensus 112 l~~n~l~~lp--~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKMFP--DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCSCC--CCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcccc--ccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 7666665532 255666666 7777777 77766666677788888 8888888777554445544 7888888888
Q ss_pred CCCCChhhHHHHhcC-CCCcEEecccCccchhhHhhccCCcccceEEeccCC
Q 010711 430 NCNLTDKTLELISGL-TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480 (503)
Q Consensus 430 ~~~l~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 480 (503)
|..++...+..|.++ ++|+.|++++|+++.+++. .+++|+.|+++++.
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 844777667777788 8888888888888776443 56788888888763
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.77 E-value=1.8e-19 Score=164.54 Aligned_cols=230 Identities=17% Similarity=0.098 Sum_probs=141.3
Q ss_pred CCCCCEEEcCCCCCcHHHHHH---hhCCCCCCEEEccCCCCChhhhHhh--hcCCCCCEEEccCCCCChHH----HHHhh
Q 010711 203 LQKLTLLNLEGCPVTAACLDS---LSALGSLFYLNLNRCQLSDDGCEKF--SKIGSLKVLNLGFNEITDEC----LVHLK 273 (503)
Q Consensus 203 ~~~L~~L~l~~~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~----~~~l~ 273 (503)
...++.+.+.++.+....... ...+++|++|++++|.+....+..+ ..+++|++|++++|.+.... ...+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 346788999998876543222 2245779999999999987777776 78999999999999887521 13345
Q ss_pred CCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhH----HHhhCCCCCCeeeccCCCCChHHH--H-HHhC
Q 010711 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL----RHLSGLTNLESINLSFTGISDGSL--R-KLAG 346 (503)
Q Consensus 274 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~--~-~~~~ 346 (503)
.+++|+.|++++|.+....+..+..+++|++|++++|.+..... ..+..+++|++|++++|.++.... . .+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 67888888888887766666666677777777777776543211 112345566666666665553221 1 2344
Q ss_pred CCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceee
Q 010711 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426 (503)
Q Consensus 347 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 426 (503)
+++|++|++++|.+.+..+..+..+ ..+++|++|++++|.++.. +..+. ++|+.|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~---------------------~~~~~L~~L~Ls~N~l~~l-p~~~~--~~L~~L~ 278 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRC---------------------MWSSALNSLNLSFAGLEQV-PKGLP--AKLRVLD 278 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSC---------------------CCCTTCCCEECCSSCCCSC-CSCCC--SCCSCEE
T ss_pred CCCCCEEECCCCCCCccchhhHHhc---------------------cCcCcCCEEECCCCCCCch-hhhhc--CCCCEEE
Confidence 5555555555555554322222222 1124566666666655532 22222 5667777
Q ss_pred ccCCCCCChhhHHHHhcCCCCcEEecccCccch
Q 010711 427 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459 (503)
Q Consensus 427 l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~ 459 (503)
+++| .++..+ .+..+++|+.|++++|++++
T Consensus 279 Ls~N-~l~~~~--~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 279 LSSN-RLNRAP--QPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSC-CCCSCC--CTTSCCCCSCEECSSTTTSC
T ss_pred CCCC-cCCCCc--hhhhCCCccEEECcCCCCCC
Confidence 7776 555532 24566777777777777654
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.77 E-value=1.2e-19 Score=160.28 Aligned_cols=157 Identities=24% Similarity=0.307 Sum_probs=83.1
Q ss_pred CCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEec
Q 010711 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404 (503)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 404 (503)
.++.|+++++.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++..++..+..+++|++|+++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 44444444444444333334445555555555555554444444455555555555555554444444555555555555
Q ss_pred CCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCC
Q 010711 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482 (503)
Q Consensus 405 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 482 (503)
+|.++...+..+..+++|+.|++++| .++...+..+..+++|+.|++++|.+....+..+..+++|+.|++++|+++
T Consensus 116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 116 GNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 55555544444455555555555555 555544445555556666666666555554445555556666666665554
No 92
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=1.4e-19 Score=162.88 Aligned_cols=201 Identities=24% Similarity=0.232 Sum_probs=166.3
Q ss_pred hhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCC
Q 010711 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303 (503)
Q Consensus 224 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 303 (503)
+..+++++.+++.++.+... +..+ .+.++.|++++|.+....+..+..+++|+.|++++|.++..... ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTAL-PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSC-CSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCCcC-CCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 45678899999999888753 3222 36899999999998877677788899999999999988765432 6788999
Q ss_pred EEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCc
Q 010711 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383 (503)
Q Consensus 304 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 383 (503)
+|++++|.+... +..+..+++|+.|++++|.++...+..+..+++|++|++++|.++...+..+..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCCcC-chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 999999988744 3456778999999999999887666678889999999999999988777778889999999999999
Q ss_pred cChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCC
Q 010711 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431 (503)
Q Consensus 384 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 431 (503)
++..++..+..+++|+.|++++|.++.. +..+...++|+.+++++|+
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCC
Confidence 9988777788899999999999999864 4455567899999999984
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=5.9e-20 Score=161.10 Aligned_cols=194 Identities=21% Similarity=0.220 Sum_probs=166.0
Q ss_pred CCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCC-CChHHHHHHhCCCCCCEeecCC-CCCCHhHHHhhcCCCCCCEE
Q 010711 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHL 377 (503)
Q Consensus 300 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L 377 (503)
+++++|+++++.+.......+..+++|+.|++++|. ++...+..+..+++|++|++++ |.++...+..|..+++|+.|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 489999999999988777778899999999999996 8776666788999999999998 99998777788899999999
Q ss_pred EccCCccChHHHHHHhcCCCCC---eEEecCC-CCChhHHHhhhcCCCCc-eeeccCCCCCChhhHHHHhcCCCCcEEec
Q 010711 378 DLFGARITDSGAAYLRNFKNLR---SLEICGG-GLTDAGVKHIKDLSSLT-LLNLSQNCNLTDKTLELISGLTGLVSLNV 452 (503)
Q Consensus 378 ~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~~~~~~~l~~L~~L~l 452 (503)
++++|.++..+. +..+++|+ .|++++| .++...+..+..+++|+ .|++++| .++..+...+.. ++|+.|++
T Consensus 111 ~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 111 GIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTT-CEEEEEEC
T ss_pred eCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCC-CCCCEEEc
Confidence 999998887543 77888888 9999999 89887777889999999 9999999 788766666666 89999999
Q ss_pred ccCc-cchhhHhhccCC-cccceEEeccCCCCHHHHHHHHhcCCCCcccccC
Q 010711 453 SNSR-ITSAGLRHLKPL-KNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 502 (503)
Q Consensus 453 ~~~~-~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~ 502 (503)
++|+ +..+.+..+..+ ++|+.|++++|+++.... ..+++|+.|.+
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~-----~~~~~L~~L~l 233 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS-----KGLEHLKELIA 233 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC-----TTCTTCSEEEC
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCccccCCh-----hHhccCceeec
Confidence 9995 998878888899 999999999999875432 25667777654
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.73 E-value=9e-19 Score=154.64 Aligned_cols=157 Identities=22% Similarity=0.300 Sum_probs=81.9
Q ss_pred CCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEcc
Q 010711 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380 (503)
Q Consensus 301 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 380 (503)
+++.|+++++.+.......+..+++|+.|++++|.+....+..+..+++|++|++++|.++...+..+..+++|+.|+++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 34444444444433333334444444444444444443333334445555555555555554444444555555555555
Q ss_pred CCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccc
Q 010711 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458 (503)
Q Consensus 381 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 458 (503)
+|.++..++..+..+++|++|++++|.+++..+..+..+++|+.|++++| .++...+..+..+++|+.|++++|++.
T Consensus 116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 55555544444555566666666666655544445555566666666666 555555555555666666666666554
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=1.9e-17 Score=149.16 Aligned_cols=174 Identities=25% Similarity=0.314 Sum_probs=124.6
Q ss_pred CCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEe
Q 010711 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353 (503)
Q Consensus 274 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 353 (503)
.+++|+.|++++|.+... ..+..+++|++|++++|.+..... +..+++|+.|++++|.+... ..+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEE
Confidence 456788888888877654 236677888888888887766543 67778888888888877653 236677888888
Q ss_pred ecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCC
Q 010711 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433 (503)
Q Consensus 354 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 433 (503)
++++|.+.+. ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++| .+
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N-~i 190 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN-HI 190 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC-cC
Confidence 8888777763 4566777888888888777765 456777778888888777776543 667777888888777 66
Q ss_pred ChhhHHHHhcCCCCcEEecccCccchhhH
Q 010711 434 TDKTLELISGLTGLVSLNVSNSRITSAGL 462 (503)
Q Consensus 434 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 462 (503)
+... .+..+++|+.|++++|++...+.
T Consensus 191 ~~l~--~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 191 SDLR--ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp CBCG--GGTTCTTCSEEEEEEEEEECCCE
T ss_pred CCCh--hhccCCCCCEEECcCCcccCCcc
Confidence 6643 36677778888887777666433
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=2.4e-17 Score=139.57 Aligned_cols=153 Identities=21% Similarity=0.300 Sum_probs=106.0
Q ss_pred CCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEE
Q 010711 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402 (503)
Q Consensus 323 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 402 (503)
+++|+.|+++++.+.+.. .+..+++|++|++++|.++.. ..+..+++|+.|++++|.+....+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 345666666666555322 355667777777777655542 3566777777777777777765556677778888888
Q ss_pred ecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCC
Q 010711 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482 (503)
Q Consensus 403 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 482 (503)
+++|.+++..+..+..+++|+.|++++|..++... .+.++++|+.|++++|.+.+.. .+..+++|+.|++++|++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence 88888877667777778888888888883366543 5777888888888888887753 6677888888888888765
Q ss_pred H
Q 010711 483 A 483 (503)
Q Consensus 483 ~ 483 (503)
.
T Consensus 195 ~ 195 (197)
T 4ezg_A 195 G 195 (197)
T ss_dssp -
T ss_pred C
Confidence 4
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.69 E-value=3.8e-17 Score=147.18 Aligned_cols=168 Identities=29% Similarity=0.366 Sum_probs=111.9
Q ss_pred hcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCe
Q 010711 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328 (503)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 328 (503)
..+++|+.|+++++.+... ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+... ..+..+++|+.
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCE
Confidence 3456677777777766543 235666777777777776665443 66677777777777766553 23666777777
Q ss_pred eeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCC
Q 010711 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408 (503)
Q Consensus 329 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 408 (503)
|++++|.+... ..+..+++|+.|++++|.++.. ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 77777766653 3456677777777777777664 456667777777777777766543 66677777777777777
Q ss_pred ChhHHHhhhcCCCCceeeccCC
Q 010711 409 TDAGVKHIKDLSSLTLLNLSQN 430 (503)
Q Consensus 409 ~~~~~~~~~~~~~L~~L~l~~~ 430 (503)
++.. .+..+++|+.|++++|
T Consensus 191 ~~l~--~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 191 SDLR--ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp CBCG--GGTTCTTCSEEEEEEE
T ss_pred CCCh--hhccCCCCCEEECcCC
Confidence 6642 3666777777777776
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.65 E-value=1.9e-16 Score=156.31 Aligned_cols=186 Identities=25% Similarity=0.304 Sum_probs=137.8
Q ss_pred hCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCE
Q 010711 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352 (503)
Q Consensus 273 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 352 (503)
..+++|+.|.+++|.+.... .+..+++|+.|++++|.+..... +..+++|+.|++++|.+... ..+..+++|+.
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCE
Confidence 34677888888888776542 47778888888888888776543 77788888888888877753 35677888888
Q ss_pred eecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCC
Q 010711 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432 (503)
Q Consensus 353 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 432 (503)
|++++|.+... ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|+|++| .
T Consensus 114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~ 186 (605)
T 1m9s_A 114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN-H 186 (605)
T ss_dssp EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS-C
T ss_pred EEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC-C
Confidence 88888888763 4567788888888888887765 456778888888888888877554 777888888888888 6
Q ss_pred CChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccce
Q 010711 433 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 473 (503)
Q Consensus 433 l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 473 (503)
++... .+..+++|+.|+|++|++...+...+..+..+..
T Consensus 187 i~~l~--~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~~~ 225 (605)
T 1m9s_A 187 ISDLR--ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 225 (605)
T ss_dssp CCBCG--GGTTCTTCSEEECCSEEEECCCCCCCSSCEEECC
T ss_pred CCCCh--HHccCCCCCEEEccCCcCcCCcccccccEEeccc
Confidence 77652 5777888888888888877654444444433333
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.65 E-value=1.2e-16 Score=157.79 Aligned_cols=173 Identities=28% Similarity=0.359 Sum_probs=135.0
Q ss_pred hhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCC
Q 010711 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327 (503)
Q Consensus 248 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 327 (503)
+..+++|+.|+++++.+.... .+..+++|+.|+|++|.+....+ +..+++|+.|++++|.+... ..+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCC
Confidence 346678888888888776432 46778888899998888776554 77888889999888887653 2577788888
Q ss_pred eeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCC
Q 010711 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407 (503)
Q Consensus 328 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 407 (503)
.|++++|.+... ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 999888887763 3477888899999988888875 567788889999998888887655 7788889999998888
Q ss_pred CChhHHHhhhcCCCCceeeccCCCCCCh
Q 010711 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTD 435 (503)
Q Consensus 408 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 435 (503)
+.+. ..+..+++|+.|+|++| .+..
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N-~l~~ 211 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQ-ECLN 211 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSE-EEEC
T ss_pred CCCC--hHHccCCCCCEEEccCC-cCcC
Confidence 8774 35777888888988888 4444
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=2e-16 Score=133.79 Aligned_cols=152 Identities=22% Similarity=0.312 Sum_probs=107.8
Q ss_pred CCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEE
Q 010711 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378 (503)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 378 (503)
+++|++|+++++.+.... .+..+++|+.|++++|.+... ..+..+++|++|++++|.++...+..+..+++|+.|+
T Consensus 43 l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 345566666665554322 355566677777776655432 2466778888888888887776666777888888888
Q ss_pred ccCCccChHHHHHHhcCCCCCeEEecCCC-CChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCcc
Q 010711 379 LFGARITDSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457 (503)
Q Consensus 379 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 457 (503)
+++|.+....+..+..+++|++|++++|. +++.. .+..+++|+.|++++| .++... .+..+++|+.|++++|++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n-~i~~~~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFD-GVHDYR--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTB-CCCCCT--TGGGCSSCCEEEECBC--
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCC-CCcChH--HhccCCCCCEEEeeCccc
Confidence 88888887667778888888888888887 66542 5778888999999888 677644 677888999999998886
Q ss_pred ch
Q 010711 458 TS 459 (503)
Q Consensus 458 ~~ 459 (503)
.+
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 54
No 101
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=2.7e-17 Score=151.35 Aligned_cols=287 Identities=16% Similarity=0.074 Sum_probs=178.1
Q ss_pred CCCCCEEEcCCCCCcHHHHHHhhC-CCCCCEEEccCCCCC--hhhhHhhhcCCCCCEEEccCCCCChHHHHHhhC-----
Q 010711 203 LQKLTLLNLEGCPVTAACLDSLSA-LGSLFYLNLNRCQLS--DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG----- 274 (503)
Q Consensus 203 ~~~L~~L~l~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~----- 274 (503)
+++++.|.+++.- .......+.. +++|+.|+++++.+. ..... .++.+..+....+.+. ...|..
T Consensus 24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I~---~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFVP---AYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEEC---TTTTEEEETTE
T ss_pred hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccccC---HHHhccccccc
Confidence 4567888887753 2222344554 788999999988776 21111 1112333333333222 233556
Q ss_pred ---CCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCC----CCChHHHHHHhCC
Q 010711 275 ---LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT----GISDGSLRKLAGL 347 (503)
Q Consensus 275 ---~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~----~~~~~~~~~~~~~ 347 (503)
+++|+.+.+.. .+......+|..+++|+.+++.++.+.......|..+.++..+..... ........++..+
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 78888888887 677666777888888888888888766655666666666665555431 0111111223345
Q ss_pred CCCC-EeecCCCCC-CHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCcee
Q 010711 348 SSLK-SLNLDARQI-TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425 (503)
Q Consensus 348 ~~L~-~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 425 (503)
..|+ .+.+..... ............+++.+.+.+.-...........+++|+.+++++|.++..+..+|..+++|+.+
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 5555 444443221 11111111134566666666543222222222347888888888887877777778888888888
Q ss_pred eccCCCCCChhhHHHHhcCCCCc-EEecccCccchhhHhhccCCcccceEEeccCCCCHHHHHHHHhcCCCCcccccC
Q 010711 426 NLSQNCNLTDKTLELISGLTGLV-SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 502 (503)
Q Consensus 426 ~l~~~~~l~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~ 502 (503)
++.+| ++.+...+|.++++|+ .+++.+ .+..+...+|.+|++|+.++++++.++..+-..+. .|++|+.+..
T Consensus 256 ~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~--~~~~L~~ly~ 328 (329)
T 3sb4_A 256 KLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFG--NGVPSKLIYK 328 (329)
T ss_dssp ECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTC--TTCCCCEEEC
T ss_pred ECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhc--CCcchhhhcc
Confidence 88776 7777777788888888 888877 77777777888888888888888888777766666 7888887753
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.63 E-value=5.6e-17 Score=151.14 Aligned_cols=156 Identities=22% Similarity=0.278 Sum_probs=87.9
Q ss_pred CCeeeccCCCCChHHHHHHh-CCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEec
Q 010711 326 LESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404 (503)
Q Consensus 326 L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 404 (503)
++.|++++|.++......+. .+++|++|++++|.++...+..|..+++|+.|++++|.+....+..|..+++|+.|+++
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 44455555544443333333 45555555555555555444455555666666666665555544455556666666666
Q ss_pred CCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHH---hcCCCCcEEecccCccchhhHhhccCCcc--cceEEeccC
Q 010711 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI---SGLTGLVSLNVSNSRITSAGLRHLKPLKN--LRSLTLESC 479 (503)
Q Consensus 405 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~---~~l~~L~~L~l~~~~~~~~~~~~l~~~~~--L~~L~l~~~ 479 (503)
+|.+....+..|..+++|+.|++++| .++..+...+ ..+++|+.|+|++|++..+.+..+..++. ++.|++++|
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 66666555555666666666666666 5555444444 34666666666666666655555555555 366666666
Q ss_pred CCC
Q 010711 480 KVT 482 (503)
Q Consensus 480 ~~~ 482 (503)
++.
T Consensus 200 ~~~ 202 (361)
T 2xot_A 200 PLE 202 (361)
T ss_dssp CEE
T ss_pred Ccc
Confidence 553
No 103
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=3.9e-17 Score=150.28 Aligned_cols=284 Identities=13% Similarity=0.124 Sum_probs=200.9
Q ss_pred CCCCCEEEeecccCCchhHHhhhc-CCCCCEEEcCCCCCc--HHHHHHhhCCCCCCEEEccCCCCChhhhHhhhc-----
Q 010711 179 LTNLKSLQISCSKVTDSGIAYLKG-LQKLTLLNLEGCPVT--AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK----- 250 (503)
Q Consensus 179 l~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~----- 250 (503)
+++++.|.+++. +.......+.. +++|+.|++++|.+. .... ..++.++.+....+.+ ...+|..
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~~I---~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMANFV---PAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTTEE---CTTTTEEEETTE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcc---cccccccccccccccc---CHHHhccccccc
Confidence 567899999875 34344555665 899999999999876 1111 1122233444444432 2355667
Q ss_pred ---CCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCcc----ChhhHHHhhCC
Q 010711 251 ---IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV----GSSGLRHLSGL 323 (503)
Q Consensus 251 ---~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~----~~~~~~~~~~~ 323 (503)
+++|+.+++.. .+.......|..|++|+.+.+.++.+......+|..+.++..+....... .......+..+
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 89999999987 66665666788899999999998877766667777776666666544211 11112234455
Q ss_pred CCCC-eeeccCCCCChHHHHHHh---CCCCCCEeecCCCCCCHhHHHhhc-CCCCCCEEEccCCccChHHHHHHhcCCCC
Q 010711 324 TNLE-SINLSFTGISDGSLRKLA---GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNL 398 (503)
Q Consensus 324 ~~L~-~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 398 (503)
..|+ .+.+.... ......+. ...+++.+.+.+. +.......+. .+++|+.+++++|.++..+..+|..|++|
T Consensus 176 ~~L~~~i~~~~~~--~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L 252 (329)
T 3sb4_A 176 EPLETTIQVGAMG--KLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL 252 (329)
T ss_dssp CCCEEEEEECTTC--CHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC
T ss_pred cccceeEEecCCC--cHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC
Confidence 6666 45554332 12222222 3567778877765 3333333333 58999999999999998888899999999
Q ss_pred CeEEecCCCCChhHHHhhhcCCCCc-eeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEe
Q 010711 399 RSLEICGGGLTDAGVKHIKDLSSLT-LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476 (503)
Q Consensus 399 ~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 476 (503)
+++++.+| +...+..+|..+++|+ .+++.+ .++.+...+|.+|++|+.++++++.+..+....|.++++|+.++.
T Consensus 253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 99999987 7777888999999999 999988 488888889999999999999999999998899999999999874
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.62 E-value=2.3e-16 Score=134.93 Aligned_cols=153 Identities=18% Similarity=0.179 Sum_probs=107.6
Q ss_pred CCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEE
Q 010711 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402 (503)
Q Consensus 323 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 402 (503)
.++|+.|+++++.++......+..+++|++|++++|.++......+..+++|++|++++|.+...++..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 35778888888777665555566777888888887777765555566777788888877777766555566777777777
Q ss_pred ecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCC
Q 010711 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482 (503)
Q Consensus 403 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 482 (503)
+++|.+++..+..+..+++|+.|++++| .++...+..+..+++|+.|++++|++.. .+++|++|+++.|.++
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHS 178 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCC
Confidence 7777777665555667777777777777 6666665566777777777777776542 4566777776666555
Q ss_pred H
Q 010711 483 A 483 (503)
Q Consensus 483 ~ 483 (503)
.
T Consensus 179 g 179 (208)
T 2o6s_A 179 G 179 (208)
T ss_dssp T
T ss_pred c
Confidence 3
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.61 E-value=1.1e-16 Score=137.01 Aligned_cols=162 Identities=18% Similarity=0.169 Sum_probs=102.1
Q ss_pred CCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEcc
Q 010711 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380 (503)
Q Consensus 301 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 380 (503)
++++|+++++.+.......+..+++|++|++++|.++......+..+++|++|++++|.++...+..+..+++|+.|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44555555554444333344555556666665555554433445566677777777766665544556667777777777
Q ss_pred CCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchh
Q 010711 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460 (503)
Q Consensus 381 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~ 460 (503)
+|.+...++..+..+++|++|++++|.+++.....+..+++|+.|++++| .+. +.+++|+.|+++.|.++..
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~~~-------~~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN-PWD-------CTCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC-CBC-------CCTTTTHHHHHHHHHCTTT
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC-Cee-------cCCCCHHHHHHHHHhCCce
Confidence 77776665555667777777777777777665555677778888888877 332 2466777888887777766
Q ss_pred hHhhccCCcc
Q 010711 461 GLRHLKPLKN 470 (503)
Q Consensus 461 ~~~~l~~~~~ 470 (503)
.|..+..++.
T Consensus 181 ip~~~~~l~~ 190 (208)
T 2o6s_A 181 VRNSAGSVAP 190 (208)
T ss_dssp BBCTTSSBCT
T ss_pred eeccCccccC
Confidence 6655554443
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.61 E-value=1.6e-16 Score=136.66 Aligned_cols=132 Identities=20% Similarity=0.258 Sum_probs=68.2
Q ss_pred CCCEeecCCCCCCHhHH-HhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeec
Q 010711 349 SLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427 (503)
Q Consensus 349 ~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 427 (503)
.+++|++++|.++...+ ..+..+++|+.|++++|.++...+..|..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 34445555544444321 22344555555555555555444444555555555555555555544444555555555555
Q ss_pred cCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCC
Q 010711 428 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481 (503)
Q Consensus 428 ~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 481 (503)
++| .++...+..+.++++|+.|++++|.++...+..+..+++|+.|++++|++
T Consensus 113 s~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 113 RSN-RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp TTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCC-cCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 555 45554444555555555555555555555455555555555555555544
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.61 E-value=2.4e-16 Score=135.58 Aligned_cols=132 Identities=19% Similarity=0.334 Sum_probs=62.8
Q ss_pred CCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeecc
Q 010711 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428 (503)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 428 (503)
+++.|++++|.++...+..+..+++|+.|++++|.+....+..|..+++|++|++++|.++......|..+++|+.|+++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 34444444444444333334444444444444444444434444444455555555554444433344444555555555
Q ss_pred CCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCC
Q 010711 429 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481 (503)
Q Consensus 429 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 481 (503)
+| .++...+..|.++++|+.|++++|.+..+.+..+..+++|++|++++|++
T Consensus 113 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 113 AN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CC-CCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 55 44444444444555555555555555544444444455555555555543
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=3.8e-16 Score=138.36 Aligned_cols=169 Identities=23% Similarity=0.288 Sum_probs=122.8
Q ss_pred CCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecC
Q 010711 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356 (503)
Q Consensus 277 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 356 (503)
++..+.+.++.+.+.. .+..+++|+.|+++++.+.... .+..+++|+.|++++|.+++..+ +..+++|+.|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3445566666665433 3556788888888888776543 56777888888888888776544 7788888888888
Q ss_pred CCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChh
Q 010711 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436 (503)
Q Consensus 357 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 436 (503)
+|.+++.. .+.. ++|+.|++++|.++.. ..+..+++|+.|++++|.+++.. .+..+++|+.|++++| .++..
T Consensus 94 ~N~l~~l~--~~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N-~i~~~ 165 (263)
T 1xeu_A 94 RNRLKNLN--GIPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGN-EITNT 165 (263)
T ss_dssp SSCCSCCT--TCCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTS-CCCBC
T ss_pred CCccCCcC--cccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCC-cCcch
Confidence 88877632 2333 7888888888887765 24677888888888888887752 5677788888888888 67665
Q ss_pred hHHHHhcCCCCcEEecccCccchhh
Q 010711 437 TLELISGLTGLVSLNVSNSRITSAG 461 (503)
Q Consensus 437 ~~~~~~~l~~L~~L~l~~~~~~~~~ 461 (503)
..+..+++|+.|++++|++...+
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEECCC
T ss_pred --HHhccCCCCCEEeCCCCcccCCc
Confidence 45677888888888888776653
No 109
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.58 E-value=1.6e-14 Score=134.11 Aligned_cols=185 Identities=22% Similarity=0.280 Sum_probs=133.1
Q ss_pred CCCCCEEecCCCccChhhHHHhh-----CCCCCCeeeccCCCCChHHHHHHh-CCCCCCEeecCCCCCCHhHHHhhc---
Q 010711 299 LCNLKCLELSDTQVGSSGLRHLS-----GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT--- 369 (503)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~--- 369 (503)
.+.|+.|++++|.+.......+. .+++|+.|++++|.+++.....+. .+++|++|++++|.+++.+...+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46789999999988876554433 236899999999998876665544 467899999999999887665542
Q ss_pred --CCCCCCEEEccCCccChHHHHH----HhcCCCCCeEEecCCCCChhHH----HhhhcCCCCceeeccCCCCCChhhHH
Q 010711 370 --SLTGLTHLDLFGARITDSGAAY----LRNFKNLRSLEICGGGLTDAGV----KHIKDLSSLTLLNLSQNCNLTDKTLE 439 (503)
Q Consensus 370 --~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~l~~~~~~ 439 (503)
..++|+.|++++|.+++..... +..+++|++|++++|.+++.+. ..+...++|+.|++++| .++.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHH
Confidence 4688999999999887755443 3678889999999998887663 34456688999999998 78775443
Q ss_pred ----HHhcCCCCcEEecccCccchhhHhhccCC---c--ccceEE--eccCCCCHH
Q 010711 440 ----LISGLTGLVSLNVSNSRITSAGLRHLKPL---K--NLRSLT--LESCKVTAN 484 (503)
Q Consensus 440 ----~~~~l~~L~~L~l~~~~~~~~~~~~l~~~---~--~L~~L~--l~~~~~~~~ 484 (503)
.+...++|+.|+|++|.+++.+...+... . .|+.+. +.++.+++.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 34467889999999999888776555332 2 166776 667776655
No 110
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=1e-17 Score=155.47 Aligned_cols=239 Identities=14% Similarity=0.070 Sum_probs=164.8
Q ss_pred CEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCCh-hHHHHHhcCCCCCE-EecC
Q 010711 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKC-LELS 308 (503)
Q Consensus 231 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~-L~l~ 308 (503)
+.++-++++++.. |..+ .+++++|++++|.++......+..+++|+.|++++|.+.+ ....+|..++++.+ +.+.
T Consensus 12 ~~v~C~~~~Lt~i-P~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEI-PSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSC-CTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCcc-CcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 4566666666643 3333 3578999999998886555667889999999999987643 34456677777775 4455
Q ss_pred CCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCC-CCCCHhHHHhhcCC-CCCCEEEccCCccCh
Q 010711 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDLFGARITD 386 (503)
Q Consensus 309 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~ 386 (503)
.+.+.......+..+++|+.|++++|.+.......+....++..+++.+ +.+.......+..+ ..++.|++++|.++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 5677666666778889999999998877654433344456677777755 55665544555554 367888999988887
Q ss_pred HHHHHHhcCCCCCeEEecC-CCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCc-cchhhHhh
Q 010711 387 SGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRH 464 (503)
Q Consensus 387 ~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~ 464 (503)
.++..+ ...+|+++.+.+ |.++......|..+++|+.|++++| +++..+... +.+|+.|.+.++. +... | .
T Consensus 169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~---~~~L~~L~~l~~~~l~~l-P-~ 241 (350)
T 4ay9_X 169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYG---LENLKKLRARSTYNLKKL-P-T 241 (350)
T ss_dssp ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSS---CTTCCEEECTTCTTCCCC-C-C
T ss_pred CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhh---hccchHhhhccCCCcCcC-C-C
Confidence 655444 346788888875 5666666667788889999999988 777765433 5566666666553 3333 3 4
Q ss_pred ccCCcccceEEeccC
Q 010711 465 LKPLKNLRSLTLESC 479 (503)
Q Consensus 465 l~~~~~L~~L~l~~~ 479 (503)
+..+++|+.+++..+
T Consensus 242 l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 242 LEKLVALMEASLTYP 256 (350)
T ss_dssp TTTCCSCCEEECSCH
T ss_pred chhCcChhhCcCCCC
Confidence 667888888888653
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.58 E-value=4.3e-16 Score=134.01 Aligned_cols=132 Identities=21% Similarity=0.313 Sum_probs=76.7
Q ss_pred CCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEec
Q 010711 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404 (503)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 404 (503)
+++.|++++|.+....+..+..+++|++|++++|.++...+..|..+++|+.|++++|.++..++..|..+++|+.|+++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 45555555555444333344455556666665555555444555556666666666666555544445556666666666
Q ss_pred CCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCcc
Q 010711 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 457 (503)
Q Consensus 405 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 457 (503)
+|.+.+..+..|..+++|+.|++++| .++...+..+..+++|+.|++++|++
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 66666555555666666666666666 55555555566666666666666654
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.58 E-value=1.2e-15 Score=132.22 Aligned_cols=133 Identities=22% Similarity=0.183 Sum_probs=61.3
Q ss_pred CCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeec
Q 010711 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427 (503)
Q Consensus 348 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 427 (503)
++|++|++++|.++...+..+..+++|+.|++++|.+...++..+..+++|+.|++++|.++......+..+++|+.|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 34444444444444433333444444444444444444433333444444555555544444443334444455555555
Q ss_pred cCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCC
Q 010711 428 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482 (503)
Q Consensus 428 ~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 482 (503)
++| .++. .+..+..+++|+.|++++|.+....+..+..+++|+.|++++|+++
T Consensus 120 s~N-~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 120 CCN-KLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSS-CCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCC-cccc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 554 3442 2233344555555555555555444444444555555555555443
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.57 E-value=6e-16 Score=144.16 Aligned_cols=173 Identities=17% Similarity=0.166 Sum_probs=79.1
Q ss_pred CEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHh-cCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccC
Q 010711 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333 (503)
Q Consensus 255 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 333 (503)
+.++.+++.+.. .+.. -.+.++.|++++|.++......+. .+++|++|++++|.+.......+..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~--~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQS--LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSS--CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCcc--CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 455665555443 1111 123456666666665554444444 455555555555555444434444455555555555
Q ss_pred CCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHH---hcCCCCCeEEecCCCCCh
Q 010711 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL---RNFKNLRSLEICGGGLTD 410 (503)
Q Consensus 334 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~ 410 (503)
|.+....+..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+...+...+ ..+++|+.|++++|.++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 54444333334444455555555554444333444444444444444444444333222 234444444444444444
Q ss_pred hHHHhhhcCCC--CceeeccCC
Q 010711 411 AGVKHIKDLSS--LTLLNLSQN 430 (503)
Q Consensus 411 ~~~~~~~~~~~--L~~L~l~~~ 430 (503)
.....+..++. ++.|++++|
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSS
T ss_pred cCHHHhhhccHhhcceEEecCC
Confidence 33333333333 234444444
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.56 E-value=1e-15 Score=131.74 Aligned_cols=133 Identities=20% Similarity=0.288 Sum_probs=85.7
Q ss_pred CCCeeeccCCCCChHHH-HHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEe
Q 010711 325 NLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403 (503)
Q Consensus 325 ~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 403 (503)
.++.|++++|.++...+ ..+..+++|++|++++|.++...+..+..+++|+.|++++|.++..++..+..+++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 34555555555544321 22455666666666666666655555666677777777777666665556666777777777
Q ss_pred cCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccc
Q 010711 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458 (503)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 458 (503)
++|.+.+..+..+..+++|+.|++++| .++...+..+..+++|+.|++++|++.
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 777776665666666777777777777 666666666667777777777777654
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.56 E-value=2.4e-15 Score=146.64 Aligned_cols=187 Identities=16% Similarity=0.132 Sum_probs=115.7
Q ss_pred CCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeec
Q 010711 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331 (503)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 331 (503)
.+++.|+++++.+.+ .+..+ +++|+.|++++|.++..+ ..+++|++|++++|.+..... +.. +|+.|++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch--hhc--CCCEEEC
Confidence 378888888887764 22222 367888888888776433 446778888888777665322 322 7777777
Q ss_pred cCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChh
Q 010711 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411 (503)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 411 (503)
++|.++... . .+++|+.|++++|.++..+. .+++|+.|++++|.++..+. +. ++|+.|++++|.++..
T Consensus 128 s~N~l~~lp-~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~l 195 (571)
T 3cvr_A 128 DNNQLTMLP-E---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESL 195 (571)
T ss_dssp CSSCCSCCC-C---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSC
T ss_pred CCCcCCCCC-C---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCch
Confidence 777666522 2 56777777777777765322 45677777777777666433 32 6777777777776643
Q ss_pred HHHhhhcCCCC-------ceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccC
Q 010711 412 GVKHIKDLSSL-------TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 467 (503)
Q Consensus 412 ~~~~~~~~~~L-------~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 467 (503)
.. +.. +| +.|++++| .++.+ |..+..+++|+.|++++|+++...+..+..
T Consensus 196 p~--~~~--~L~~~~~~L~~L~Ls~N-~l~~l-p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 196 PA--VPV--RNHHSEETEIFFRCREN-RITHI-PENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CC--CC----------CCEEEECCSS-CCCCC-CGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hh--HHH--hhhcccccceEEecCCC-cceec-CHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 22 322 45 77777776 56653 334445677777777777776665554433
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.54 E-value=8.2e-16 Score=136.17 Aligned_cols=167 Identities=23% Similarity=0.339 Sum_probs=123.6
Q ss_pred CCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeecc
Q 010711 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332 (503)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 332 (503)
++..++++.+.+.+.. .+..+++|+.|++++|.+.... .+..+++|++|++++|.+..... +..+++|+.|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3445556666555432 3456778888888888776543 57778888888888888776544 7788888888888
Q ss_pred CCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhH
Q 010711 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412 (503)
Q Consensus 333 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 412 (503)
+|.++... .+.. ++|+.|++++|.+++. ..+..+++|+.|++++|+++... .+..+++|+.|++++|.+.+.
T Consensus 94 ~N~l~~l~--~~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 94 RNRLKNLN--GIPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp SSCCSCCT--TCCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCccCCcC--cccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch-
Confidence 88776532 1233 7888888888888774 35778888888888888887763 577888888888888888775
Q ss_pred HHhhhcCCCCceeeccCCCCCCh
Q 010711 413 VKHIKDLSSLTLLNLSQNCNLTD 435 (503)
Q Consensus 413 ~~~~~~~~~L~~L~l~~~~~l~~ 435 (503)
..+..+++|+.|++++| .+..
T Consensus 166 -~~l~~l~~L~~L~l~~N-~~~~ 186 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQ-KCVN 186 (263)
T ss_dssp -TTSTTCCCCCEEEEEEE-EEEC
T ss_pred -HHhccCCCCCEEeCCCC-cccC
Confidence 56777888888888888 4444
No 117
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.54 E-value=7.3e-14 Score=129.69 Aligned_cols=185 Identities=23% Similarity=0.360 Sum_probs=139.6
Q ss_pred CCCCCEEEccCCCCChhHHHHHhcC-----CCCCEEecCCCccChhhHHHh-hCCCCCCeeeccCCCCChHHHHHHh---
Q 010711 275 LTNLESLNLDSCGIGDEGLVNLTGL-----CNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLA--- 345 (503)
Q Consensus 275 ~~~L~~L~l~~~~~~~~~~~~l~~~-----~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~--- 345 (503)
.++|+.|++++|.++......+... ++|++|++++|.+.+.....+ ..+++|+.|++++|.+++.....+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4679999999999987766555433 689999999999887655444 3456899999999999887766653
Q ss_pred --CCCCCCEeecCCCCCCHhHHHh----hcCCCCCCEEEccCCccChHH----HHHHhcCCCCCeEEecCCCCChhHHHh
Q 010711 346 --GLSSLKSLNLDARQITDTGLAA----LTSLTGLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVKH 415 (503)
Q Consensus 346 --~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~ 415 (503)
..++|++|++++|.+++.+... +..+++|++|++++|.+.+.+ ...+...++|++|++++|.+++.+...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 4688999999999998765443 367899999999999988766 445567889999999999998876554
Q ss_pred h----hcCCCCceeeccCCCCCChhhHHHHhcCC--C---CcEEe--cccCccchh
Q 010711 416 I----KDLSSLTLLNLSQNCNLTDKTLELISGLT--G---LVSLN--VSNSRITSA 460 (503)
Q Consensus 416 ~----~~~~~L~~L~l~~~~~l~~~~~~~~~~l~--~---L~~L~--l~~~~~~~~ 460 (503)
+ ...++|+.|++++| .++......+..+. . |+.+. +..+.+++.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFN-ELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHHHCSSCCEEECTTS-SCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHHhCCCCCEEeccCC-CCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 4 45689999999999 78887777766542 2 67777 666666654
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.53 E-value=3.2e-15 Score=129.55 Aligned_cols=133 Identities=27% Similarity=0.284 Sum_probs=88.9
Q ss_pred CCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEe
Q 010711 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403 (503)
Q Consensus 324 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 403 (503)
++|+.|++++|.+....+..+..+++|++|++++|.+.......+..+++|+.|++++|.++..++..+..+++|+.|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 55666666666665544455566666777777766666554455566777777777777766665555666777777777
Q ss_pred cCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccc
Q 010711 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458 (503)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 458 (503)
++|.+... +..+..+++|+.|++++| .++...+..+..+++|+.|++++|++.
T Consensus 120 s~N~l~~l-p~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 120 CCNKLTEL-PRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSSCCCSC-CTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccccc-CcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 77777643 445566777777777777 666666666677777777777777665
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.52 E-value=3.2e-15 Score=122.99 Aligned_cols=132 Identities=24% Similarity=0.248 Sum_probs=82.5
Q ss_pred CCCCEeecCCCCCC-HhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceee
Q 010711 348 SSLKSLNLDARQIT-DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426 (503)
Q Consensus 348 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 426 (503)
++|+.|++++|.++ +..+..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 55666666666554 22233345556666666666666554 4455666777777777766664455555567777777
Q ss_pred ccCCCCCChhh-HHHHhcCCCCcEEecccCccchhhH---hhccCCcccceEEeccCCCC
Q 010711 427 LSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGL---RHLKPLKNLRSLTLESCKVT 482 (503)
Q Consensus 427 l~~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~~~~ 482 (503)
+++| .++... +..+..+++|+.|++++|+++...+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 7777 566543 2556667777777777777766544 45667777777777777654
No 120
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.52 E-value=1.7e-15 Score=140.62 Aligned_cols=220 Identities=18% Similarity=0.133 Sum_probs=99.4
Q ss_pred CCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcEEeccCcccccCc-cccccCCccccEe
Q 010711 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMKLESL 160 (503)
Q Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L 160 (503)
++++|+|++| .++.....+|+.+++|++|++++|.......+.+|.++++++++...++..+... +..+..+++|++|
T Consensus 31 ~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 31 NAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 4555555543 3444333444555555555555544222222233444554444333222222222 2344555555555
Q ss_pred eccCCcCCCccccccccCCCCCCEEEeec-ccCCchhHHhhhcC-CCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccC-
Q 010711 161 NIKWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGL-QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR- 237 (503)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~- 237 (503)
+++++. +.......+....++..+++.+ +.+.......+..+ ..++.|++++|.+..... ......+++.+.+.+
T Consensus 110 ~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~-~~f~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 110 LISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN-SAFNGTQLDELNLSDN 187 (350)
T ss_dssp EEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT-TSSTTEEEEEEECTTC
T ss_pred cccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCCh-hhccccchhHHhhccC
Confidence 555432 2222222233334444555533 23333333333333 245556666665544322 222334566666653
Q ss_pred CCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCC-CCChhHHHHHhcCCCCCEEecCC
Q 010711 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD 309 (503)
Q Consensus 238 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~ 309 (503)
+.+.......|..+++|+.|++++|.++.... ..+.+|+.|.+.++ .+... + .+..+++|+.+++..
T Consensus 188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~---~~~~~L~~L~~l~~~~l~~l-P-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 188 NNLEELPNDVFHGASGPVILDISRTRIHSLPS---YGLENLKKLRARSTYNLKKL-P-TLEKLVALMEASLTY 255 (350)
T ss_dssp TTCCCCCTTTTTTEECCSEEECTTSCCCCCCS---SSCTTCCEEECTTCTTCCCC-C-CTTTCCSCCEEECSC
T ss_pred CcccCCCHHHhccCcccchhhcCCCCcCccCh---hhhccchHhhhccCCCcCcC-C-CchhCcChhhCcCCC
Confidence 34443334455666666666666666553222 22445555555444 22221 1 245566777777654
No 121
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.52 E-value=2.1e-15 Score=142.43 Aligned_cols=331 Identities=15% Similarity=0.138 Sum_probs=163.6
Q ss_pred hhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcEEeccCcccccCcccccc
Q 010711 73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152 (503)
Q Consensus 73 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 152 (503)
...+|.+|.+|+.+.+.. .+...+..+|..|.+|+.+++..+ +......+|..|.+|+.+.+... ........+.
T Consensus 63 g~~AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~ 137 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFK 137 (394)
T ss_dssp CTTTTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred HHHHhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeecceeee
Confidence 345567777777777764 355566667777777777777654 33344556667777776665541 1122223344
Q ss_pred CCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCE
Q 010711 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232 (503)
Q Consensus 153 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 232 (503)
.+..++...... ........+.++++|+.+.+..+. .......|.++.+|+.+.+..+ +.......+.++..|+.
T Consensus 138 ~~~~~~~~~~~~---~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 138 GCDFKEITIPEG---VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN 212 (394)
T ss_dssp TCCCSEEECCTT---CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred cccccccccCcc---ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence 443333322222 222233455666666666665432 2223344555666666665443 11111233444455554
Q ss_pred EEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCcc
Q 010711 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312 (503)
Q Consensus 233 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 312 (503)
+.+..+... ..........|+.+.+ ... ........+..+..++.+.+..+..
T Consensus 213 i~~~~~~~~--i~~~~~~~~~l~~i~i------------------------p~~-~~~i~~~~f~~~~~l~~~~~~~~~~ 265 (394)
T 4fs7_A 213 MEFPNSLYY--LGDFALSKTGVKNIII------------------------PDS-FTELGKSVFYGCTDLESISIQNNKL 265 (394)
T ss_dssp CCCCTTCCE--ECTTTTTTCCCCEEEE------------------------CTT-CCEECSSTTTTCSSCCEEEECCTTC
T ss_pred eecCCCceE--eehhhcccCCCceEEE------------------------CCC-ceecccccccccccceeEEcCCCcc
Confidence 444332111 0011112233444443 322 1111222333444444444433211
Q ss_pred ChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHH
Q 010711 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392 (503)
Q Consensus 313 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 392 (503)
......+..++.++.+......+.+ ..+..+.+|+.+.+..+ ++..+..+|.+|.+|+.+.+..+ ++..+..+|
T Consensus 266 -~i~~~~F~~~~~l~~~~~~~~~i~~---~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF 339 (394)
T 4fs7_A 266 -RIGGSLFYNCSGLKKVIYGSVIVPE---KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSF 339 (394)
T ss_dssp -EECSCTTTTCTTCCEEEECSSEECT---TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTT
T ss_pred -eeeccccccccccceeccCceeecc---ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhc
Confidence 1112234444555555444332221 23445566666666443 33333455666667777666543 444445566
Q ss_pred hcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEE
Q 010711 393 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450 (503)
Q Consensus 393 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L 450 (503)
..|.+|+.+.+..+ ++..+..+|.+|++|+.+++..+ ++.. ...|.++++|+.+
T Consensus 340 ~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~--~~~~-~~~F~~c~~L~~I 393 (394)
T 4fs7_A 340 RGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR--LEQY-RYDFEDTTKFKWI 393 (394)
T ss_dssp TTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG--GGGG-GGGBCTTCEEEEE
T ss_pred cCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC--CEEh-hheecCCCCCcEE
Confidence 67777777777654 55555667777777777777654 3332 2356666666654
No 122
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.52 E-value=6e-15 Score=143.88 Aligned_cols=188 Identities=21% Similarity=0.136 Sum_probs=143.4
Q ss_pred CCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEec
Q 010711 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307 (503)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 307 (503)
.+++.|+++++.+.. .+..+ +++|+.|++++|.+.. .+ ..+++|+.|++++|.++..+. +.. +|++|++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCCcch--hhc--CCCEEEC
Confidence 389999999998876 33333 3789999999998874 33 457899999999998876433 433 8999999
Q ss_pred CCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChH
Q 010711 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387 (503)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 387 (503)
++|.+..... .+++|+.|++++|.++... . .+++|++|++++|.++..+. +. ++|+.|++++|.++..
T Consensus 128 s~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp-~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~l 195 (571)
T 3cvr_A 128 DNNQLTMLPE----LPALLEYINADNNQLTMLP-E---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESL 195 (571)
T ss_dssp CSSCCSCCCC----CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSC
T ss_pred CCCcCCCCCC----cCccccEEeCCCCccCcCC-C---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCch
Confidence 9998876332 5789999999999887632 2 57899999999999887433 44 8999999999988865
Q ss_pred HHHHHhcCCCC-------CeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcC
Q 010711 388 GAAYLRNFKNL-------RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 444 (503)
Q Consensus 388 ~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l 444 (503)
+. +.. +| +.|++++|.++.. +..+..+++|+.|++++| .++...+..+..+
T Consensus 196 p~--~~~--~L~~~~~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~L~~N-~l~~~~p~~l~~l 253 (571)
T 3cvr_A 196 PA--VPV--RNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDN-PLSSRIRESLSQQ 253 (571)
T ss_dssp CC--CC----------CCEEEECCSSCCCCC-CGGGGGSCTTEEEECCSS-SCCHHHHHHHHHH
T ss_pred hh--HHH--hhhcccccceEEecCCCcceec-CHHHhcCCCCCEEEeeCC-cCCCcCHHHHHHh
Confidence 43 322 56 9999999999864 555666899999999999 8888888777654
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.51 E-value=8.5e-15 Score=117.77 Aligned_cols=127 Identities=25% Similarity=0.267 Sum_probs=54.6
Q ss_pred CCCCEeecCCCCCC-HhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceee
Q 010711 348 SSLKSLNLDARQIT-DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426 (503)
Q Consensus 348 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 426 (503)
++++.|++++|.++ +..+..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+++..+..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34444444444443 11222233444444444444444433 2334444444444444444443333334444444444
Q ss_pred ccCCCCCChhh-HHHHhcCCCCcEEecccCccchhhH---hhccCCcccceEEec
Q 010711 427 LSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGL---RHLKPLKNLRSLTLE 477 (503)
Q Consensus 427 l~~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~ 477 (503)
+++| .++... +..+..+++|+.|++++|+++...+ ..+..+++|+.|+++
T Consensus 95 ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTS-CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCC-cCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 4444 344321 2344444555555555554444333 234444555554443
No 124
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.50 E-value=2.4e-15 Score=142.01 Aligned_cols=336 Identities=16% Similarity=0.169 Sum_probs=209.8
Q ss_pred ecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcEEeccCcccccCccccccCCccccEeeccCCcCCCccc
Q 010711 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172 (503)
Q Consensus 93 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 172 (503)
.++.++..+|..|.+|+.+.+..+ +......+|.+|.+|+.+++..+ ........+..++.|+.+.+.. .+....
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~--~l~~i~ 132 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL--MLKSIG 132 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT--TCCEEC
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC--ceeeec
Confidence 355566778888999999999754 44555677888888888888652 2222334566677777766653 233333
Q ss_pred cccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCC
Q 010711 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252 (503)
Q Consensus 173 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~ 252 (503)
...+..+..+ ...+.. .........|.++++|+.+.+..+. .......|..+.
T Consensus 133 ~~aF~~~~~~-~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~-------------------------~~I~~~~F~~c~ 185 (394)
T 4fs7_A 133 VEAFKGCDFK-EITIPE-GVTVIGDEAFATCESLEYVSLPDSM-------------------------ETLHNGLFSGCG 185 (394)
T ss_dssp TTTTTTCCCS-EEECCT-TCCEECTTTTTTCTTCCEEECCTTC-------------------------CEECTTTTTTCT
T ss_pred ceeeeccccc-ccccCc-cccccchhhhcccCCCcEEecCCcc-------------------------ceeccccccCCC
Confidence 3444444322 222211 1111122334455555555554321 112223344445
Q ss_pred CCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeecc
Q 010711 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332 (503)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 332 (503)
+|+.+.+..+ +.......+..+..|+.+.+...... ... ......+|+.+.+... ........+..+..++.+.+.
T Consensus 186 ~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~-~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~ 261 (394)
T 4fs7_A 186 KLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGD-FALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQ 261 (394)
T ss_dssp TCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECT-TTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEEC
T ss_pred CceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eeh-hhcccCCCceEEECCC-ceecccccccccccceeEEcC
Confidence 5555554432 22122233455666666665544111 111 1223567888887653 223334456788999999987
Q ss_pred CCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhH
Q 010711 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412 (503)
Q Consensus 333 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 412 (503)
.+. .......+..++.++.+......+.. ..+..+.+|+.+.+..+ ++..+..+|..|.+|+.+++.++ ++..+
T Consensus 262 ~~~-~~i~~~~F~~~~~l~~~~~~~~~i~~---~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~ 335 (394)
T 4fs7_A 262 NNK-LRIGGSLFYNCSGLKKVIYGSVIVPE---KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIG 335 (394)
T ss_dssp CTT-CEECSCTTTTCTTCCEEEECSSEECT---TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred CCc-ceeeccccccccccceeccCceeecc---ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEh
Confidence 653 22233456788999999887765443 46778999999999765 55566678899999999999754 67777
Q ss_pred HHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceE
Q 010711 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474 (503)
Q Consensus 413 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 474 (503)
..+|.+|.+|+.+.+..+ ++.+...+|.+|++|+.+++..+ +... ...+.+|++|+.+
T Consensus 336 ~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~-~~~~-~~~F~~c~~L~~I 393 (394)
T 4fs7_A 336 KRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR-LEQY-RYDFEDTTKFKWI 393 (394)
T ss_dssp TTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG-GGGG-GGGBCTTCEEEEE
T ss_pred HHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC-CEEh-hheecCCCCCcEE
Confidence 788999999999999875 77777789999999999999754 3333 3568889988875
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.50 E-value=7e-15 Score=137.87 Aligned_cols=263 Identities=12% Similarity=0.120 Sum_probs=151.3
Q ss_pred CCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEc
Q 010711 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259 (503)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 259 (503)
..++.+.+... +.......|.++ +|+.+.+..+ +......+|.+ .+|+.+.+.. .+......+|..+++|+.+++
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 45555555432 222333344443 4666665543 22222233333 2455555543 333333344444455555555
Q ss_pred cCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChH
Q 010711 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339 (503)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 339 (503)
..+ .+......+|. +.+|+.+.+..+ +.......|..|++|+.+.+..+ +...
T Consensus 188 ~~n------------------------~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I 240 (401)
T 4fdw_A 188 SKT------------------------KITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTI 240 (401)
T ss_dssp TTS------------------------CCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEE
T ss_pred CCC------------------------cceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCc
Confidence 444 33333333333 344555555422 33333344555555666655542 3333
Q ss_pred HHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccC-----hHHHHHHhcCCCCCeEEecCCCCChhHHH
Q 010711 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT-----DSGAAYLRNFKNLRSLEICGGGLTDAGVK 414 (503)
Q Consensus 340 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 414 (503)
...+|.+ .+|+.+.+. +.++..+..+|..|++|+.+.+.++... ..+..+|..|++|+.+.+.+ .+...+..
T Consensus 241 ~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~ 317 (401)
T 4fdw_A 241 GQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQG 317 (401)
T ss_dssp CTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTT
T ss_pred ccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhh
Confidence 3334444 567777763 3444444566777777777777666443 34456777888888888874 46666777
Q ss_pred hhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCc-ccceEEeccCC
Q 010711 415 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK-NLRSLTLESCK 480 (503)
Q Consensus 415 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~ 480 (503)
+|.+|++|+.+.|.++ ++.+...+|.++ +|+.+++.+|.........+..++ +++.|++-.+.
T Consensus 318 aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 318 LLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp TTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred hhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 8888888998888664 777777788888 899999998877776666777774 68888887754
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.49 E-value=4.8e-16 Score=152.48 Aligned_cols=103 Identities=20% Similarity=0.232 Sum_probs=49.2
Q ss_pred CCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecc
Q 010711 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453 (503)
Q Consensus 374 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~ 453 (503)
|+.|++++|.++..+ . +..+++|+.|++++|.++. .+..++.+++|+.|++++| .++..+ .+.++++|+.|+++
T Consensus 443 L~~L~Ls~n~l~~lp-~-~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N-~l~~lp--~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 443 VRVLHLAHKDLTVLC-H-LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDN-ALENVD--GVANLPRLQELLLC 516 (567)
T ss_dssp CSEEECTTSCCSSCC-C-GGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSS-CCCCCG--GGTTCSSCCEEECC
T ss_pred ceEEEecCCCCCCCc-C-ccccccCcEeecCcccccc-cchhhhcCCCCCEEECCCC-CCCCCc--ccCCCCCCcEEECC
Confidence 444444444444432 1 4444555555555554442 2334444555555555555 444422 44445555555555
Q ss_pred cCccchhh-HhhccCCcccceEEeccCCCC
Q 010711 454 NSRITSAG-LRHLKPLKNLRSLTLESCKVT 482 (503)
Q Consensus 454 ~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~ 482 (503)
+|.++... |..+..+++|+.|++++|+++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 55555443 444445555555555555443
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.48 E-value=3e-14 Score=114.55 Aligned_cols=128 Identities=20% Similarity=0.233 Sum_probs=89.3
Q ss_pred CCCCeeeccCCCCC-hHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEE
Q 010711 324 TNLESINLSFTGIS-DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402 (503)
Q Consensus 324 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 402 (503)
++|+.|++++|.+. ...+..+..+++|++|++++|.++.. ..+..+++|+.|++++|.+....+..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666554 22233345667777777777777664 5566777888888888877775566666788888888
Q ss_pred ecCCCCChh-HHHhhhcCCCCceeeccCCCCCChhhH---HHHhcCCCCcEEeccc
Q 010711 403 ICGGGLTDA-GVKHIKDLSSLTLLNLSQNCNLTDKTL---ELISGLTGLVSLNVSN 454 (503)
Q Consensus 403 l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~l~~L~~L~l~~ 454 (503)
+++|.+++. .+..+..+++|+.|++++| .++...+ ..+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 888888774 3466777888888888888 6666554 5677888888888763
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.47 E-value=1.2e-14 Score=119.55 Aligned_cols=135 Identities=21% Similarity=0.202 Sum_probs=103.3
Q ss_pred CCCCCeeeccCCCCC-hHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeE
Q 010711 323 LTNLESINLSFTGIS-DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401 (503)
Q Consensus 323 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 401 (503)
.++|+.|++++|.+. ...+..+..+++|++|++++|.++.. ..+..+++|+.|++++|.+....+..+..+++|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 356666666666655 12233345677888888888877765 566788889999999988887556667779999999
Q ss_pred EecCCCCChhH-HHhhhcCCCCceeeccCCCCCChhhH---HHHhcCCCCcEEecccCccchh
Q 010711 402 EICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTL---ELISGLTGLVSLNVSNSRITSA 460 (503)
Q Consensus 402 ~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~l~~L~~L~l~~~~~~~~ 460 (503)
++++|.+++.. +..+..+++|+.|++++| .++...+ ..+..+++|+.|++++|.+.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 99999988753 367788899999999999 6776655 5788899999999999987664
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.46 E-value=8.3e-16 Score=150.83 Aligned_cols=197 Identities=18% Similarity=0.161 Sum_probs=152.3
Q ss_pred hCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCc-------------cChhhHHHhhCCCCCCeee-ccCCCCCh
Q 010711 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-------------VGSSGLRHLSGLTNLESIN-LSFTGISD 338 (503)
Q Consensus 273 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~~~~ 338 (503)
..+++|+.|+++++.+. ..|..++.+++|+.|++.++. .....+..+..+++|+.|+ ++.+.+.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 45789999999998775 557788889999999986653 2333345566677788887 55443322
Q ss_pred HHHH-----HHhC--CCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChh
Q 010711 339 GSLR-----KLAG--LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411 (503)
Q Consensus 339 ~~~~-----~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 411 (503)
.... .+.. ...|+.|++++|.+++.+ .+..+++|+.|++++|.++.. |..+..+++|+.|++++|.+++.
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp--~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~l 501 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENV 501 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCC--CGGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCC
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCCc--CccccccCcEeecCccccccc-chhhhcCCCCCEEECCCCCCCCC
Confidence 1111 1111 246999999999998853 388999999999999999855 56889999999999999999985
Q ss_pred HHHhhhcCCCCceeeccCCCCCChhh-HHHHhcCCCCcEEecccCccchhhHh---hccCCcccceEEe
Q 010711 412 GVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGLR---HLKPLKNLRSLTL 476 (503)
Q Consensus 412 ~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~~~~L~~L~l 476 (503)
+ .+..+++|+.|++++| .++... |..+.++++|+.|++++|+++..++. .+..+|+|+.|++
T Consensus 502 -p-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 502 -D-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -G-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -c-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 3 7889999999999999 888876 88899999999999999999886542 2345888988864
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.46 E-value=3.6e-14 Score=133.06 Aligned_cols=268 Identities=9% Similarity=0.095 Sum_probs=135.1
Q ss_pred ccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEE
Q 010711 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234 (503)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 234 (503)
..++.+.+.. .++......+.++ +|+.+.+..+ +.......|.++ +|+.+.+.. .+......+|.++++|+.++
T Consensus 113 ~~l~~i~ip~--~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPN--SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCT--TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECC--ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 4555555542 2333344445543 5666666543 333334444443 466666654 33333334566667777777
Q ss_pred ccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccCh
Q 010711 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 314 (503)
Q Consensus 235 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 314 (503)
+..+.+.......|. ..+|+.+.+..+ +.......|..+++|+.+.+..+ +......+|.. ++|+.+.+.+ .+..
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~ 261 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTN 261 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCE
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccE
Confidence 766666554444554 456666666533 33333344556666666666543 33333334433 4555555532 2222
Q ss_pred hhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhc
Q 010711 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394 (503)
Q Consensus 315 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 394 (503)
.....|..|++|+.+.+.++.... +.....+..+|..|++|+.+.+.+ .++..+..+|..
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~-------------------~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~ 321 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFND-------------------DPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGG 321 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCC-------------------CTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTT
T ss_pred EChhHhhCCCCCCEEEeCCccccC-------------------CcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcC
Confidence 223344444455555444432220 000022234455555566555553 244444455566
Q ss_pred CCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCC-CCcEEecccCc
Q 010711 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT-GLVSLNVSNSR 456 (503)
Q Consensus 395 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~-~L~~L~l~~~~ 456 (503)
|++|+.+.+..+ ++.....+|..+ +|+.+.+.+| .........|.+++ +++.|.+..+.
T Consensus 322 c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 322 NRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHH
Confidence 666666666443 444445566666 6666666666 44444444555553 56666666554
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.43 E-value=3.3e-14 Score=119.44 Aligned_cols=109 Identities=22% Similarity=0.269 Sum_probs=53.2
Q ss_pred CCCEEEccCCccChHHHH-HHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEe
Q 010711 373 GLTHLDLFGARITDSGAA-YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451 (503)
Q Consensus 373 ~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~ 451 (503)
+++.|++++|.+....+. .+..+++|++|++++|.+++..+..+..+++|+.|++++| .++...+..+.++++|+.|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEEE
Confidence 444444444444433221 2344455555555555554444444444555555555555 44444444444555555555
Q ss_pred cccCccchhhHhhccCCcccceEEeccCCCC
Q 010711 452 VSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482 (503)
Q Consensus 452 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 482 (503)
+++|.++...+..+..+++|++|++++|+++
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 5555555544444555555555555555443
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=6.9e-14 Score=115.82 Aligned_cols=107 Identities=18% Similarity=0.231 Sum_probs=48.4
Q ss_pred CCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhH-HHHhcCCCCcEEe
Q 010711 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-ELISGLTGLVSLN 451 (503)
Q Consensus 373 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~l~~L~~L~ 451 (503)
+|+.|++++|.++.. ..+..+++|+.|++++|.+++..+..+..+++|+.|++++| .+...+. ..+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEE
Confidence 444444444444332 23334444444444444444433233344455555555555 3433221 2344555555555
Q ss_pred cccCccchhhHh---hccCCcccceEEeccCCCC
Q 010711 452 VSNSRITSAGLR---HLKPLKNLRSLTLESCKVT 482 (503)
Q Consensus 452 l~~~~~~~~~~~---~l~~~~~L~~L~l~~~~~~ 482 (503)
+++|++...+.. .+..+++|+.|++++|...
T Consensus 120 l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 120 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 555555443221 2445555555555555433
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.40 E-value=1.3e-13 Score=115.66 Aligned_cols=108 Identities=21% Similarity=0.267 Sum_probs=62.8
Q ss_pred CCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEe
Q 010711 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451 (503)
Q Consensus 372 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~ 451 (503)
++|+.|++++|.+...+ ..+..+++|+.|++++|.++...+..|..+++|+.|++++| .++...+..|.++++|+.|+
T Consensus 31 ~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp TTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEE
Confidence 35555555555555432 34555566666666666665555555555666666666666 55555555556666666666
Q ss_pred cccCccchhhHhhccCCcccceEEeccCCC
Q 010711 452 VSNSRITSAGLRHLKPLKNLRSLTLESCKV 481 (503)
Q Consensus 452 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 481 (503)
+++|.+..+.+..+..+++|+.|++++|++
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 109 LHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 666666655555555566666666666554
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.40 E-value=2.1e-13 Score=113.08 Aligned_cols=110 Identities=18% Similarity=0.235 Sum_probs=58.1
Q ss_pred CCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEe
Q 010711 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451 (503)
Q Consensus 372 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~ 451 (503)
++|+.|++++|.+...++..+..+++|++|++++|.++...+..+..+++|+.|++++| .++...+..+..+++|+.|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEEE
Confidence 34555555555444443334444555555555555555444444455555555555555 45554444455555566666
Q ss_pred cccCccchhhHhhccCCcccceEEeccCCCC
Q 010711 452 VSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482 (503)
Q Consensus 452 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 482 (503)
+++|.+..+.+..+..+++|++|++++|+++
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 6655555544444455556666666666544
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.38 E-value=7.4e-15 Score=124.28 Aligned_cols=133 Identities=23% Similarity=0.246 Sum_probs=102.3
Q ss_pred HHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCC
Q 010711 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422 (503)
Q Consensus 343 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 422 (503)
.+..+++|++|++++|.++... .+..+++|+.|++++|.+... +..+..+++|+.|++++|.+++.. .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASLS--GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSC-SSHHHHHHHCSEEEEEEEECCCHH--HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccc-cchhhcCCcCCEEECcCCcCCcCC--ccccCCCC
Confidence 5677888888888888777643 666778888888888887754 345566788999999999888743 57778899
Q ss_pred ceeeccCCCCCChhhH-HHHhcCCCCcEEecccCccchhhHh----------hccCCcccceEEeccCCCCH
Q 010711 423 TLLNLSQNCNLTDKTL-ELISGLTGLVSLNVSNSRITSAGLR----------HLKPLKNLRSLTLESCKVTA 483 (503)
Q Consensus 423 ~~L~l~~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~----------~l~~~~~L~~L~l~~~~~~~ 483 (503)
+.|++++| .++.... ..+..+++|+.|++++|++....+. .+..+++|+.|+ +++++.
T Consensus 118 ~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 118 RVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 99999998 7776543 5788899999999999988766443 367788999886 666654
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.37 E-value=2.4e-13 Score=112.57 Aligned_cols=135 Identities=19% Similarity=0.243 Sum_probs=102.3
Q ss_pred hCCCCCCeeeccCCCCChHHHHHHhC-CCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCC
Q 010711 321 SGLTNLESINLSFTGISDGSLRKLAG-LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399 (503)
Q Consensus 321 ~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 399 (503)
..+++|+.|++++|.+... + .+.. .++|+.|++++|.+++. ..+..+++|+.|++++|.+...++..+..+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i-~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVI-E-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCCSC-C-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCchh-H-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 3456777777777766643 2 2333 34888888888888774 5677888999999999988877655668899999
Q ss_pred eEEecCCCCChhHH-HhhhcCCCCceeeccCCCCCChhhHH---HHhcCCCCcEEecccCccchh
Q 010711 400 SLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLE---LISGLTGLVSLNVSNSRITSA 460 (503)
Q Consensus 400 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~l~~L~~L~l~~~~~~~~ 460 (503)
.|++++|.+..... ..+..+++|+.|++++| .++..+.. .+..+++|+.|++++|...+.
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 99999999876442 36778899999999999 66654433 578899999999999987664
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.33 E-value=3.6e-14 Score=119.99 Aligned_cols=152 Identities=23% Similarity=0.230 Sum_probs=115.3
Q ss_pred HhCCCCCCEeecCCCCCCHhH------HHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhh
Q 010711 344 LAGLSSLKSLNLDARQITDTG------LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417 (503)
Q Consensus 344 ~~~~~~L~~L~l~~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 417 (503)
+...+.++.+++..+.+.+.. +..+..+++|+.|++++|.+...+ .+..+++|+.|++++|.++.. +..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l-~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKI-ENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSC-SSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccc-cchhh
Confidence 344444444444444333322 236778999999999999988854 788899999999999998853 44566
Q ss_pred cCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhH-hhccCCcccceEEeccCCCCHHH--------HHH
Q 010711 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESCKVTAND--------IKR 488 (503)
Q Consensus 418 ~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~--------~~~ 488 (503)
.+++|+.|++++| .++... .+..+++|+.|++++|.+..... ..+..+++|++|++++|+++... ...
T Consensus 91 ~~~~L~~L~L~~N-~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~ 167 (198)
T 1ds9_A 91 VADTLEELWISYN-QIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRI 167 (198)
T ss_dssp HHHHCSEEEEEEE-ECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHH
T ss_pred cCCcCCEEECcCC-cCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHH
Confidence 6799999999999 788754 68889999999999999998654 67889999999999999875542 222
Q ss_pred HHhcCCCCccccc
Q 010711 489 LQSRDLPNLVSFR 501 (503)
Q Consensus 489 ~~~~~~~~L~~l~ 501 (503)
.....+|+|+.|+
T Consensus 168 ~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 168 EVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHCSSCSEEC
T ss_pred HHHHhCCCcEEEC
Confidence 2234888998875
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.31 E-value=1.9e-13 Score=114.72 Aligned_cols=109 Identities=18% Similarity=0.235 Sum_probs=57.6
Q ss_pred CCCEeecCCCCCCHhHHH-hhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeec
Q 010711 349 SLKSLNLDARQITDTGLA-ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427 (503)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 427 (503)
++++|++++|.+....+. .+..+++|+.|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 455555555544443322 2445555555555555555544444555555555555555555544444555555555555
Q ss_pred cCCCCCChhhHHHHhcCCCCcEEecccCccc
Q 010711 428 SQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458 (503)
Q Consensus 428 ~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 458 (503)
++| .++...+..+..+++|+.|++++|++.
T Consensus 110 ~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 110 YDN-QISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSS-CCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCC-cCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 555 555554555555555666666555544
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.31 E-value=1e-12 Score=108.98 Aligned_cols=112 Identities=21% Similarity=0.227 Sum_probs=77.4
Q ss_pred CCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeec
Q 010711 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427 (503)
Q Consensus 348 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 427 (503)
++|++|++++|.++...+..+..+++|+.|++++|.++..++..+..+++|+.|++++|.+++..+..+..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 56667777666666554455566677777777777766655555667777777777777777665556667777777777
Q ss_pred cCCCCCChhhHHHHhcCCCCcEEecccCccchh
Q 010711 428 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460 (503)
Q Consensus 428 ~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~ 460 (503)
++| .++..++..+..+++|+.|++++|++...
T Consensus 108 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 108 DTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCC-cceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 777 66666655566777788888887776543
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.29 E-value=7.4e-13 Score=111.04 Aligned_cols=108 Identities=24% Similarity=0.291 Sum_probs=59.9
Q ss_pred CCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeec
Q 010711 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427 (503)
Q Consensus 348 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 427 (503)
+++++|++++|.++... ..+..+++|+.|++++|.++...+..|..+++|++|++++|.++...+..|..+++|+.|++
T Consensus 31 ~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 34555555555554322 34445555555555555555544445555556666666666555555555555566666666
Q ss_pred cCCCCCChhhHHHHhcCCCCcEEecccCcc
Q 010711 428 SQNCNLTDKTLELISGLTGLVSLNVSNSRI 457 (503)
Q Consensus 428 ~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 457 (503)
++| .++...+..|..+++|+.|++++|++
T Consensus 110 ~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 110 HGN-DISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CSS-CCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCC-CCCeeChhhhhcCccccEEEeCCCCe
Confidence 666 55555544555566666666666554
No 141
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.22 E-value=6.8e-12 Score=118.30 Aligned_cols=129 Identities=21% Similarity=0.225 Sum_probs=67.1
Q ss_pred HHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCC
Q 010711 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374 (503)
Q Consensus 295 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 374 (503)
+|..+.+|+.+.+.+.. .......+..++.|+.+.+.. .+......+|.+|.+|+.+.+..+ ++..+..+|.+|.+|
T Consensus 260 aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEeccccc-ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 44455555555554332 122233455566666666642 333333345666677777776543 444444566677777
Q ss_pred CEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCC
Q 010711 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430 (503)
Q Consensus 375 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 430 (503)
+.+.+..+ ++..+..+|.+|++|+.+++.++.. ....+..+.+|+.+.+..+
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~---~~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS---QWNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH---HHHTCBCCCCC--------
T ss_pred CEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee---ehhhhhccCCCCEEEeCCC
Confidence 77777543 4444556677777777777776532 1234555666776666544
No 142
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.22 E-value=2.9e-11 Score=97.08 Aligned_cols=102 Identities=20% Similarity=0.408 Sum_probs=82.3
Q ss_pred CCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcC----CCCcEEecccC-ccchhhHhhccCCcc
Q 010711 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL----TGLVSLNVSNS-RITSAGLRHLKPLKN 470 (503)
Q Consensus 396 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l----~~L~~L~l~~~-~~~~~~~~~l~~~~~ 470 (503)
..|++|+++++.+++.+...+..+++|+.|+|++|..+++.....+..+ ++|+.|+|++| .+++.+...+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 3578888888888888888888888899999999888888877777764 47999999988 588888888888999
Q ss_pred cceEEeccC-CCCHHH--HHHHHhcCCCCcc
Q 010711 471 LRSLTLESC-KVTAND--IKRLQSRDLPNLV 498 (503)
Q Consensus 471 L~~L~l~~~-~~~~~~--~~~~~~~~~~~L~ 498 (503)
|++|++++| .++..+ ...+. ..+|+++
T Consensus 141 L~~L~L~~c~~Itd~gl~~~~L~-~~lP~l~ 170 (176)
T 3e4g_A 141 LKYLFLSDLPGVKEKEKIVQAFK-TSLPSLE 170 (176)
T ss_dssp CCEEEEESCTTCCCHHHHHHHHH-HHCTTCE
T ss_pred CCEEECCCCCCCCchHHHHHHHH-HHCCCcE
Confidence 999999999 588765 44555 6777765
No 143
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.22 E-value=5.5e-13 Score=135.15 Aligned_cols=117 Identities=21% Similarity=0.187 Sum_probs=50.0
Q ss_pred HhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCC
Q 010711 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375 (503)
Q Consensus 296 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 375 (503)
+..+++|+.|++++|.+.... ..+..+++|+.|++++|.++. .+..+..+++|++|+|++|.++. .+..+..+++|+
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~ 296 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNIS-ANIFKYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLK 296 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCC-GGGGGCCSCSCCBCTTSCCSC-CCGGGGGGTTCCEEECTTSCCSS-CCSSGGGGTTCS
T ss_pred hccCCCCcEEECCCCCCCCCC-hhhcCCCCCCEEEeeCCcCcc-cChhhhCCCCCCEEeCcCCcCCc-cChhhcCCCCCC
Confidence 334444444444444443221 112234444444444444442 22334444455555555544442 233344444555
Q ss_pred EEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhh
Q 010711 376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416 (503)
Q Consensus 376 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 416 (503)
.|++++|.+... +..|..+++|+.|+|++|.+++..+..+
T Consensus 297 ~L~L~~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 297 YFYFFDNMVTTL-PWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp EEECCSSCCCCC-CSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred EEECCCCCCCcc-ChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 555555544432 2224444555555555555544444333
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.20 E-value=1.1e-11 Score=116.90 Aligned_cols=130 Identities=18% Similarity=0.234 Sum_probs=74.0
Q ss_pred HHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCC
Q 010711 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421 (503)
Q Consensus 342 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 421 (503)
.+|..++.|+.+.+.... ...+..+|.++++|+.+.+.. .++..+..+|..|.+|+.+.+..+ ++..+..+|..|.+
T Consensus 259 ~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEeccccc-ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 345566777777765432 222335566677777777643 344444556667777777777643 45555566777777
Q ss_pred CceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccC
Q 010711 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 479 (503)
Q Consensus 422 L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 479 (503)
|+.+.|..+ ++.+...+|.+|++|+.+++.++... ...+..+.+|+.+.+..+
T Consensus 336 L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 336 LERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC--------
T ss_pred CCEEEECcc--cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCC
Confidence 777777543 55555667777777777777765321 234556667777766554
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.17 E-value=8.9e-12 Score=102.11 Aligned_cols=105 Identities=18% Similarity=0.226 Sum_probs=54.7
Q ss_pred CCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccC
Q 010711 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 429 (503)
Q Consensus 350 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 429 (503)
.+.++++++.++..+ ..+ .++|+.|++++|.++...+..|..+++|++|++++|.++...+..|..+++|+.|++++
T Consensus 11 ~~~l~~s~n~l~~ip-~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVP-TGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccC-ccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 345666666555432 111 24555555555555555444455555555555555555554444445555555555555
Q ss_pred CCCCChhhHHHHhcCCCCcEEecccCccc
Q 010711 430 NCNLTDKTLELISGLTGLVSLNVSNSRIT 458 (503)
Q Consensus 430 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 458 (503)
| .++...+..|..+++|+.|++++|++.
T Consensus 88 N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 N-QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred C-ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5 455544444555555555555555443
No 146
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.17 E-value=1.1e-11 Score=125.51 Aligned_cols=137 Identities=21% Similarity=0.158 Sum_probs=91.7
Q ss_pred HHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCC
Q 010711 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420 (503)
Q Consensus 341 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 420 (503)
+..+..++.|+.|++++|.+.... ..+..+++|+.|++++|.++.. +..+..+++|+.|+|++|.++. .+..+..++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNIS-ANIFKYDFLTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLTS-LPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCC-GGGGGCCSCSCCBCTTSCCSCC-CGGGGGGTTCCEEECTTSCCSS-CCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCCCCC-hhhcCCCCCCEEEeeCCcCccc-ChhhhCCCCCCEEeCcCCcCCc-cChhhcCCC
Confidence 455667788888888888777533 3334678888888888877743 4566778888888888888774 366677778
Q ss_pred CCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCc-ccceEEeccCCCC
Q 010711 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK-NLRSLTLESCKVT 482 (503)
Q Consensus 421 ~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~ 482 (503)
+|+.|+|++| .++.+ |..|..+++|+.|+|++|+++...+..+.... .+..+++++|.++
T Consensus 294 ~L~~L~L~~N-~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 294 QLKYFYFFDN-MVTTL-PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp TCSEEECCSS-CCCCC-CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCEEECCCC-CCCcc-ChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCccc
Confidence 8888888888 66653 44477788888888888888776665554322 2233566666554
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.15 E-value=1.5e-11 Score=101.15 Aligned_cols=104 Identities=20% Similarity=0.211 Sum_probs=54.9
Q ss_pred CEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCC
Q 010711 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430 (503)
Q Consensus 351 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 430 (503)
+.++++++.++..+. .+ .++|+.|++++|.+....+..+..+++|+.|++++|.+++.....|..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~~iP~-~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPA-GI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCC-Cc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 456666655544321 11 245566666666555554445555555555555555555544444455555555555555
Q ss_pred CCCChhhHHHHhcCCCCcEEecccCccc
Q 010711 431 CNLTDKTLELISGLTGLVSLNVSNSRIT 458 (503)
Q Consensus 431 ~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 458 (503)
.++...+..+..+++|+.|++++|++.
T Consensus 92 -~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 -HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp -CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred -ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 455444444555555555555555544
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.10 E-value=6.8e-10 Score=102.04 Aligned_cols=71 Identities=21% Similarity=0.327 Sum_probs=31.7
Q ss_pred CCCCceeeccCCCCCChhhHHHHh---cCCCCcEEecccCccchhhHhhc----cCCcccceEEeccCCCCHHHHHHHH
Q 010711 419 LSSLTLLNLSQNCNLTDKTLELIS---GLTGLVSLNVSNSRITSAGLRHL----KPLKNLRSLTLESCKVTANDIKRLQ 490 (503)
Q Consensus 419 ~~~L~~L~l~~~~~l~~~~~~~~~---~l~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~~~~~~~~ 490 (503)
+|+|+.|.+.+| .+.......+. .+++|+.|+|+.|.+.+.+...+ ..+++|+.|++++|.++..+.+.+.
T Consensus 251 ~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~ 328 (362)
T 2ra8_A 251 FPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ 328 (362)
T ss_dssp CTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHH
T ss_pred CCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHH
Confidence 345555555544 33322222221 24455555555555554333222 2335555555555555555544444
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.08 E-value=1.7e-10 Score=92.60 Aligned_cols=90 Identities=21% Similarity=0.320 Sum_probs=76.1
Q ss_pred CCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCC----CCCCEEEcCCCccccHHHHHHHhCCCC
Q 010711 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL----SNLTSLSFRRNNAITAQGMKAFAGLIN 132 (503)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~~~~l~~ 132 (503)
-.|+.|+++++.+++.....+..|++|++|+|++|..+++.+...++.+ ++|++|++++|..+++.+...+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 3588999999888888888888899999999999888888888888874 579999999888788888888888888
Q ss_pred CcEEeccCcccccC
Q 010711 133 LVKLDLERCTRIHG 146 (503)
Q Consensus 133 L~~L~l~~~~~~~~ 146 (503)
|++|++++|+.++.
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 88888888876665
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.07 E-value=4e-11 Score=98.20 Aligned_cols=83 Identities=28% Similarity=0.279 Sum_probs=40.9
Q ss_pred CCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeec
Q 010711 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427 (503)
Q Consensus 348 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 427 (503)
+++++|++++|.++...+..+..+++|+.|++++|+++..++..|..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 44555555555554444444444555555555555554444444444555555555555554443334444555555555
Q ss_pred cCC
Q 010711 428 SQN 430 (503)
Q Consensus 428 ~~~ 430 (503)
++|
T Consensus 110 ~~N 112 (170)
T 3g39_A 110 LNN 112 (170)
T ss_dssp CSS
T ss_pred CCC
Confidence 554
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.03 E-value=7.4e-11 Score=96.90 Aligned_cols=83 Identities=22% Similarity=0.269 Sum_probs=43.3
Q ss_pred CCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeec
Q 010711 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 427 (503)
Q Consensus 348 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 427 (503)
++|++|++++|.+++..+..+..+++|+.|++++|+++..++..|..+++|+.|++++|.+....+..+..+++|+.|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 45555555555555544444555555555555555555544444445555555555555555444334455555555555
Q ss_pred cCC
Q 010711 428 SQN 430 (503)
Q Consensus 428 ~~~ 430 (503)
++|
T Consensus 113 ~~N 115 (174)
T 2r9u_A 113 YNN 115 (174)
T ss_dssp CSS
T ss_pred CCC
Confidence 555
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.03 E-value=5.2e-09 Score=96.17 Aligned_cols=159 Identities=21% Similarity=0.206 Sum_probs=78.7
Q ss_pred HhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHh--cCCCCCEEecCCC--ccC-hhhH---
Q 010711 246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT--GLCNLKCLELSDT--QVG-SSGL--- 317 (503)
Q Consensus 246 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~--~~~-~~~~--- 317 (503)
..+..+|+|+.|.++++.... .+. + ..++|+.|.+..|.++......+. .+|+|++|++..+ ... ....
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 344556677777776552111 011 1 256777777777777666555554 5777777776421 111 0000
Q ss_pred -HHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhc---CCCCCCEEEccCCccChHHHHHH-
Q 010711 318 -RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT---SLTGLTHLDLFGARITDSGAAYL- 392 (503)
Q Consensus 318 -~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~- 392 (503)
..+.. ..+|+|+.|.+.+|.+.+.....+. .+|+|+.|+++.|.+.+.+...+
T Consensus 243 ~~~l~~----------------------~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~ 300 (362)
T 2ra8_A 243 RPLFSK----------------------DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLL 300 (362)
T ss_dssp GGGSCT----------------------TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHH
T ss_pred HHHHhc----------------------CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHH
Confidence 01110 1234455555544444433222221 34555666665555555443322
Q ss_pred ---hcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCC
Q 010711 393 ---RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430 (503)
Q Consensus 393 ---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 430 (503)
..+++|+.|++++|.+++.+...+...- ...++++.+
T Consensus 301 ~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~ 340 (362)
T 2ra8_A 301 DHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDS 340 (362)
T ss_dssp TTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSB
T ss_pred hhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCC
Confidence 3456666666666666665555554311 344566655
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.98 E-value=1.8e-10 Score=108.04 Aligned_cols=98 Identities=17% Similarity=0.207 Sum_probs=48.8
Q ss_pred HhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCc
Q 010711 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423 (503)
Q Consensus 344 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 423 (503)
+..+.+|+.+.+..+ +...+..+|..|++|+.+.+.++.++..+..+|.+|.+|+.+.+..+ ++..+..+|.+|.+|+
T Consensus 259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 336 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS 336 (379)
T ss_dssp TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred cceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence 334444444444321 22222334445555555555555444444445555566666665432 4444445566666666
Q ss_pred eeeccCCCCCChhhHHHHhcCC
Q 010711 424 LLNLSQNCNLTDKTLELISGLT 445 (503)
Q Consensus 424 ~L~l~~~~~l~~~~~~~~~~l~ 445 (503)
.+.+..+ ++.+...+|.+++
T Consensus 337 ~i~ip~~--v~~I~~~aF~~c~ 356 (379)
T 4h09_A 337 TISYPKS--ITLIESGAFEGSS 356 (379)
T ss_dssp CCCCCTT--CCEECTTTTTTSS
T ss_pred EEEECCc--cCEEchhHhhCCC
Confidence 6666443 4444444555553
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.96 E-value=6.1e-09 Score=86.31 Aligned_cols=124 Identities=19% Similarity=0.206 Sum_probs=65.2
Q ss_pred HHHHhCCCCCCEeecCCC-CCCHhHHH----hhcCCCCCCEEEccCCccChHHHHH----HhcCCCCCeEEecCCCCChh
Q 010711 341 LRKLAGLSSLKSLNLDAR-QITDTGLA----ALTSLTGLTHLDLFGARITDSGAAY----LRNFKNLRSLEICGGGLTDA 411 (503)
Q Consensus 341 ~~~~~~~~~L~~L~l~~~-~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~ 411 (503)
...+...+.|++|++++| .+.+.+.. .+...++|++|++++|.+.+.+... +...+.|++|++++|.|.+.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 344556677777777777 77665443 2334566666666666666544322 23445566666666665554
Q ss_pred HHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEec--ccCccchhhH----hhccCCcccceEEeccCCCCHHH
Q 010711 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV--SNSRITSAGL----RHLKPLKNLRSLTLESCKVTAND 485 (503)
Q Consensus 412 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l--~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~ 485 (503)
+...+. ..+...++|+.|++ ++|.+.+.+. +.+...++|++|++++|.+...+
T Consensus 109 g~~~l~---------------------~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 109 GILALV---------------------EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp HHHHHH---------------------HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred HHHHHH---------------------HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 433221 22333445555555 4455554432 22334455666666666554443
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.92 E-value=1.2e-09 Score=102.59 Aligned_cols=312 Identities=16% Similarity=0.146 Sum_probs=151.1
Q ss_pred CCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcE
Q 010711 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (503)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (503)
..+++.+.+.. .++.....+|.+|.+|+.+++.. .+...+..+|..| +|+.+.+..+ +......+|..+ +|+.
T Consensus 45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~-~L~~ 117 (379)
T 4h09_A 45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGT-DLDD 117 (379)
T ss_dssp GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTC-CCSE
T ss_pred ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEECCce--eeEeccceeccC-Cccc
Confidence 34566666653 24334445566667777776654 2445555566665 4555555433 222223344433 5666
Q ss_pred EeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhh-hcCCCCCEEEcCCC
Q 010711 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGC 214 (503)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~ 214 (503)
+.+... ........+.++ .++.+.+.. .+.......+..+..++...+............. .......
T Consensus 118 i~lp~~-~~~i~~~~F~~~-~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------- 186 (379)
T 4h09_A 118 FEFPGA-TTEIGNYIFYNS-SVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTI------- 186 (379)
T ss_dssp EECCTT-CCEECTTTTTTC-CCCEEEECT--TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSE-------
T ss_pred ccCCCc-cccccccccccc-eeeeeeccc--eeeccccchhcccccccccccccccceeecccceecccccce-------
Confidence 666541 111112223332 333333331 2222333444455555555544322111000000 0000000
Q ss_pred CCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHH
Q 010711 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294 (503)
Q Consensus 215 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 294 (503)
...+.....+..+.+.... .......+.....++.+.+..+ +.......+..+..|+.+.+..+ +......
T Consensus 187 ------~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~ 257 (379)
T 4h09_A 187 ------LESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSF 257 (379)
T ss_dssp ------EEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTT
T ss_pred ------eccccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCcc
Confidence 0011122233333332211 1112233344555666655432 22222233455666776666553 4444445
Q ss_pred HHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCC
Q 010711 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374 (503)
Q Consensus 295 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 374 (503)
++..+.+|+.+.+..+ +.......+..|++|+.+.+.++.++.....+|.+|.+|+.+.+..+ ++..+..+|.+|.+|
T Consensus 258 aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 335 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKAL 335 (379)
T ss_dssp TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred ccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCC
Confidence 5666677777776543 33333455677777887777766666555566777788888887543 555455677788888
Q ss_pred CEEEccCCccChHHHHHHhcCCC
Q 010711 375 THLDLFGARITDSGAAYLRNFKN 397 (503)
Q Consensus 375 ~~L~l~~~~~~~~~~~~~~~~~~ 397 (503)
+.+.+..+ ++.....+|.+++.
T Consensus 336 ~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 336 STISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp CCCCCCTT-CCEECTTTTTTSSC
T ss_pred CEEEECCc-cCEEchhHhhCCCC
Confidence 88877654 44444556666643
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.90 E-value=3.4e-08 Score=81.80 Aligned_cols=115 Identities=21% Similarity=0.158 Sum_probs=84.8
Q ss_pred hHHHhhCCCCCCeeeccCC-CCChHHHHH----HhCCCCCCEeecCCCCCCHhHHHh----hcCCCCCCEEEccCCccCh
Q 010711 316 GLRHLSGLTNLESINLSFT-GISDGSLRK----LAGLSSLKSLNLDARQITDTGLAA----LTSLTGLTHLDLFGARITD 386 (503)
Q Consensus 316 ~~~~~~~~~~L~~L~l~~~-~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~ 386 (503)
....+...+.|++|++++| .+.+..... +...++|++|++++|.+.+.+... +...++|++|++++|.+.+
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3456778899999999999 998865544 446799999999999999876543 4456899999999999998
Q ss_pred HHHHH----HhcCCCCCeEEe--cCCCCChhHHHhhh----cCCCCceeeccCC
Q 010711 387 SGAAY----LRNFKNLRSLEI--CGGGLTDAGVKHIK----DLSSLTLLNLSQN 430 (503)
Q Consensus 387 ~~~~~----~~~~~~L~~L~l--~~~~~~~~~~~~~~----~~~~L~~L~l~~~ 430 (503)
.+... +...++|++|++ ++|.+.+.+...+. ..++|+.|++++|
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 76443 455677888888 77777776544332 2345555555554
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.87 E-value=1.4e-09 Score=100.76 Aligned_cols=89 Identities=21% Similarity=0.247 Sum_probs=42.8
Q ss_pred HhcCCCCCeEEecC-CCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcc
Q 010711 392 LRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 470 (503)
Q Consensus 392 ~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~ 470 (503)
+..+++|+.|+|++ |.+....+..|..+++|+.|+|++| +++...+..|.++++|+.|+|++|.+..+++..+..++
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~- 104 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS- 104 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-
Confidence 33444444455543 4444444444444555555555555 45544444455555555555555555544333333333
Q ss_pred cceEEeccCCCC
Q 010711 471 LRSLTLESCKVT 482 (503)
Q Consensus 471 L~~L~l~~~~~~ 482 (503)
|+.|++.+|++.
T Consensus 105 L~~l~l~~N~~~ 116 (347)
T 2ifg_A 105 LQELVLSGNPLH 116 (347)
T ss_dssp CCEEECCSSCCC
T ss_pred ceEEEeeCCCcc
Confidence 555555555443
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.74 E-value=4.5e-09 Score=97.26 Aligned_cols=100 Identities=20% Similarity=0.250 Sum_probs=69.3
Q ss_pred eeeccCC-CCChHHHHHHhCCCCCCEeecCC-CCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecC
Q 010711 328 SINLSFT-GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405 (503)
Q Consensus 328 ~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 405 (503)
.++.+++ .++. .|. +..+++|+.|+|++ |.+....+..|..+++|+.|++++|.+...++..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4555555 5655 333 66777778888875 777776666677777777777777777777666777777777777777
Q ss_pred CCCChhHHHhhhcCCCCceeeccCC
Q 010711 406 GGLTDAGVKHIKDLSSLTLLNLSQN 430 (503)
Q Consensus 406 ~~~~~~~~~~~~~~~~L~~L~l~~~ 430 (503)
|.++...+..+..++ |+.|++.+|
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGN 113 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSS
T ss_pred CccceeCHHHcccCC-ceEEEeeCC
Confidence 777765555555444 777777777
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.19 E-value=8.7e-07 Score=76.97 Aligned_cols=65 Identities=28% Similarity=0.397 Sum_probs=36.9
Q ss_pred hcCCCCCeEEecCCCCChhH--HHhhhcCCCCceeeccCCCCCChhh-HHHHhcCCCCcEEecccCccch
Q 010711 393 RNFKNLRSLEICGGGLTDAG--VKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITS 459 (503)
Q Consensus 393 ~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~ 459 (503)
..+++|+.|+|++|.+++.. +..+..+++|+.|+|++| +++... ...+..+ +|++|++++|++..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNSLCD 234 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCcCcc
Confidence 45677777777777766532 234455666666666666 555531 1222222 66666666666553
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.13 E-value=1.1e-06 Score=76.23 Aligned_cols=82 Identities=24% Similarity=0.337 Sum_probs=42.6
Q ss_pred cCCCCceeeccCCCCCChhh--HHHHhcCCCCcEEecccCccchhh-HhhccCCcccceEEeccCCCCH-----HHHHHH
Q 010711 418 DLSSLTLLNLSQNCNLTDKT--LELISGLTGLVSLNVSNSRITSAG-LRHLKPLKNLRSLTLESCKVTA-----NDIKRL 489 (503)
Q Consensus 418 ~~~~L~~L~l~~~~~l~~~~--~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~ 489 (503)
.++.|+.|+|++| .++... +..+..+++|+.|+|++|.+.... ...+..+ +|++|++++|+++. ...+..
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 4566666666666 555522 234455666666666666665541 1222223 66666666666553 223322
Q ss_pred HhcCCCCccccc
Q 010711 490 QSRDLPNLVSFR 501 (503)
Q Consensus 490 ~~~~~~~L~~l~ 501 (503)
....+|+|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 234566665553
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.09 E-value=8.7e-05 Score=60.75 Aligned_cols=111 Identities=17% Similarity=0.214 Sum_probs=58.0
Q ss_pred CCCCCCEeecCCC-CCCHhHH----HhhcCCCCCCEEEccCCccChHHH----HHHhcCCCCCeEEecCCCCChhHHHhh
Q 010711 346 GLSSLKSLNLDAR-QITDTGL----AALTSLTGLTHLDLFGARITDSGA----AYLRNFKNLRSLEICGGGLTDAGVKHI 416 (503)
Q Consensus 346 ~~~~L~~L~l~~~-~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~ 416 (503)
.-+.|+.|+++++ .+.+.+. .++..-..|+.|++++|.+.+... ..+..-+.|++|+|++|.|.+.+...+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3455555555553 5544332 233344556666666666665543 333455667777777777776665443
Q ss_pred h----cCCCCceeeccCCC--CCChh----hHHHHhcCCCCcEEecccCc
Q 010711 417 K----DLSSLTLLNLSQNC--NLTDK----TLELISGLTGLVSLNVSNSR 456 (503)
Q Consensus 417 ~----~~~~L~~L~l~~~~--~l~~~----~~~~~~~l~~L~~L~l~~~~ 456 (503)
. .-+.|+.|+|++|. .+... ..+.+..-+.|+.|+++.+.
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 2 23556666666542 12322 12334445566666665443
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.95 E-value=0.00019 Score=58.81 Aligned_cols=83 Identities=14% Similarity=0.103 Sum_probs=37.9
Q ss_pred CCCCEeecCCCCCCHhHHHh----hcCCCCCCEEEccCCccChHHHHH----HhcCCCCCeEEecCC---CCChhHH---
Q 010711 348 SSLKSLNLDARQITDTGLAA----LTSLTGLTHLDLFGARITDSGAAY----LRNFKNLRSLEICGG---GLTDAGV--- 413 (503)
Q Consensus 348 ~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~---~~~~~~~--- 413 (503)
..|+.|+|++|.+.+.+... +..-..|+.|++++|.+.+.+... +..-..|++|+++++ .+.+.+.
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i 149 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 149 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence 44444444444444433322 223344555555555555444332 233445666666543 3343322
Q ss_pred -HhhhcCCCCceeeccCC
Q 010711 414 -KHIKDLSSLTLLNLSQN 430 (503)
Q Consensus 414 -~~~~~~~~L~~L~l~~~ 430 (503)
..+..-++|+.|+++.+
T Consensus 150 a~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 150 MMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHCSSCCEEECCCC
T ss_pred HHHHHhCCCcCeEeccCC
Confidence 22333466666666554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.76 E-value=0.017 Score=43.88 Aligned_cols=55 Identities=24% Similarity=0.212 Sum_probs=35.9
Q ss_pred eEEecCCCCC--hhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccc
Q 010711 400 SLEICGGGLT--DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 458 (503)
Q Consensus 400 ~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 458 (503)
.++-++++++ .. +..+ .++|+.|+|++| +++.+....|..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~v-P~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASL-PTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTS-CSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccC-CCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCee
Confidence 4555555554 32 2222 246788888888 777777777777888888888877653
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.70 E-value=0.017 Score=43.85 Aligned_cols=53 Identities=19% Similarity=0.125 Sum_probs=39.2
Q ss_pred EEEccCCccC--hHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCC
Q 010711 376 HLDLFGARIT--DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431 (503)
Q Consensus 376 ~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 431 (503)
.++.++..++ ..+ ..+ .++|+.|+|++|.|+......|..+++|+.|+|++|+
T Consensus 12 ~v~Cs~~~L~~~~vP-~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLP-TAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSC-SCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCC-CCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 5666676665 332 111 3478999999999888777788888899999999884
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=80.40 E-value=0.64 Score=33.08 Aligned_cols=42 Identities=10% Similarity=-0.012 Sum_probs=23.9
Q ss_pred hhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCC
Q 010711 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115 (503)
Q Consensus 72 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 115 (503)
....+|.+|.+|+.+.+-. .++.++..+|..|.+|+.+.+.+
T Consensus 11 I~~~aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 3334556666666666654 34555555566666666666654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=70.19 E-value=1.1 Score=31.81 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=19.6
Q ss_pred HHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEeccc
Q 010711 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454 (503)
Q Consensus 413 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~ 454 (503)
...|.+|.+|+.+.|-.+ ++.+....|.+|.+|+.+.+.+
T Consensus 13 ~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcC
Confidence 344445555555555443 4444444555555555555543
Done!