Query 010712
Match_columns 503
No_of_seqs 296 out of 1172
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 03:42:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010712.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010712hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11637 AmiB activator; Provi 99.1 4.3E-08 9.3E-13 105.1 26.8 74 49-122 43-119 (428)
2 PF09726 Macoilin: Transmembra 99.1 6.6E-08 1.4E-12 109.0 27.1 183 49-231 421-657 (697)
3 TIGR02169 SMC_prok_A chromosom 99.0 6E-08 1.3E-12 114.5 27.0 46 51-96 292-337 (1164)
4 TIGR02169 SMC_prok_A chromosom 99.0 6.3E-08 1.4E-12 114.4 26.8 31 195-225 454-484 (1164)
5 PRK11637 AmiB activator; Provi 99.0 1.6E-07 3.5E-12 100.7 27.5 77 47-123 48-127 (428)
6 PF00038 Filament: Intermediat 99.0 2.1E-07 4.4E-12 95.4 26.4 117 48-164 6-137 (312)
7 COG4942 Membrane-bound metallo 99.0 6.3E-07 1.4E-11 94.7 29.7 74 48-121 33-109 (420)
8 TIGR02168 SMC_prok_B chromosom 98.9 2.2E-07 4.7E-12 109.5 26.8 39 49-87 673-711 (1179)
9 TIGR02168 SMC_prok_B chromosom 98.9 2.6E-07 5.5E-12 108.9 26.8 19 49-67 694-712 (1179)
10 COG4372 Uncharacterized protei 98.9 3.5E-07 7.6E-12 94.5 23.6 60 36-95 71-130 (499)
11 KOG0977 Nuclear envelope prote 98.9 5E-07 1.1E-11 98.3 24.8 34 48-81 44-77 (546)
12 PF07888 CALCOCO1: Calcium bin 98.9 7.8E-07 1.7E-11 96.8 25.7 53 49-101 139-191 (546)
13 PF07888 CALCOCO1: Calcium bin 98.9 9.3E-07 2E-11 96.3 26.2 51 47-97 144-194 (546)
14 PHA02562 46 endonuclease subun 98.9 6.1E-07 1.3E-11 98.7 25.3 16 26-42 129-144 (562)
15 KOG0250 DNA repair protein RAD 98.9 5.3E-07 1.2E-11 103.3 25.1 61 172-232 398-458 (1074)
16 KOG0964 Structural maintenance 98.8 4.7E-07 1E-11 102.1 23.4 113 49-161 695-823 (1200)
17 PHA02562 46 endonuclease subun 98.8 6.6E-07 1.4E-11 98.4 24.2 18 210-227 379-396 (562)
18 COG4942 Membrane-bound metallo 98.8 1.9E-06 4E-11 91.2 24.7 116 128-243 159-279 (420)
19 PF00261 Tropomyosin: Tropomyo 98.8 8.8E-07 1.9E-11 88.0 20.6 97 133-229 123-230 (237)
20 KOG0996 Structural maintenance 98.8 9.3E-07 2E-11 101.5 23.0 37 55-91 386-422 (1293)
21 PF00261 Tropomyosin: Tropomyo 98.8 3.9E-06 8.5E-11 83.4 24.8 185 49-233 4-213 (237)
22 PRK02224 chromosome segregatio 98.8 1.3E-06 2.8E-11 101.4 24.6 18 214-231 416-433 (880)
23 COG1196 Smc Chromosome segrega 98.8 1.7E-06 3.7E-11 103.4 26.1 22 51-72 265-286 (1163)
24 KOG0933 Structural maintenance 98.8 1.1E-06 2.5E-11 99.4 22.9 136 97-232 778-935 (1174)
25 KOG0250 DNA repair protein RAD 98.7 2.4E-06 5.2E-11 98.1 24.9 64 169-232 402-465 (1074)
26 COG1196 Smc Chromosome segrega 98.7 3E-06 6.4E-11 101.4 26.7 52 176-227 864-915 (1163)
27 PF14662 CCDC155: Coiled-coil 98.7 9.3E-06 2E-10 77.5 24.5 59 176-234 131-189 (193)
28 TIGR00606 rad50 rad50. This fa 98.7 1.6E-06 3.5E-11 104.8 24.5 57 106-162 799-861 (1311)
29 PRK03918 chromosome segregatio 98.7 3.7E-06 8E-11 97.4 26.5 31 49-79 455-485 (880)
30 KOG0161 Myosin class II heavy 98.7 2.6E-06 5.7E-11 103.8 25.7 40 176-215 1098-1137(1930)
31 KOG0996 Structural maintenance 98.7 2.2E-06 4.8E-11 98.6 23.6 48 52-99 404-451 (1293)
32 KOG0933 Structural maintenance 98.7 5.7E-06 1.2E-10 94.0 26.1 190 46-235 677-917 (1174)
33 KOG0977 Nuclear envelope prote 98.7 3.4E-06 7.3E-11 92.0 23.7 115 50-164 89-217 (546)
34 COG1579 Zn-ribbon protein, pos 98.7 3.8E-06 8.3E-11 83.2 22.1 111 47-162 11-121 (239)
35 PRK02224 chromosome segregatio 98.7 4.4E-06 9.5E-11 97.0 26.1 43 187-229 651-693 (880)
36 PF09726 Macoilin: Transmembra 98.7 4.4E-06 9.6E-11 94.5 25.1 29 56-84 421-449 (697)
37 TIGR00606 rad50 rad50. This fa 98.6 6.7E-06 1.4E-10 99.5 26.6 187 47-233 823-1044(1311)
38 PF05701 WEMBL: Weak chloropla 98.6 1.3E-05 2.8E-10 88.4 26.5 104 126-229 312-433 (522)
39 PRK03918 chromosome segregatio 98.6 7.9E-06 1.7E-10 94.7 26.2 31 109-139 217-247 (880)
40 KOG0971 Microtubule-associated 98.6 1E-05 2.2E-10 90.9 25.4 47 187-233 495-541 (1243)
41 PF00038 Filament: Intermediat 98.6 3.2E-05 6.9E-10 79.3 27.4 39 49-87 50-88 (312)
42 COG1340 Uncharacterized archae 98.6 3.4E-05 7.4E-10 78.3 26.1 86 130-215 158-247 (294)
43 COG4372 Uncharacterized protei 98.6 2.8E-05 6.1E-10 80.7 25.7 183 49-231 77-280 (499)
44 PRK04863 mukB cell division pr 98.6 1.8E-05 3.9E-10 96.0 26.7 37 195-231 441-477 (1486)
45 PRK09039 hypothetical protein; 98.5 7.5E-06 1.6E-10 85.7 20.3 57 170-226 139-199 (343)
46 PF05701 WEMBL: Weak chloropla 98.5 3.1E-05 6.8E-10 85.3 25.9 108 126-233 284-395 (522)
47 KOG1029 Endocytic adaptor prot 98.5 1.6E-05 3.5E-10 88.1 22.9 10 109-118 447-456 (1118)
48 PF14662 CCDC155: Coiled-coil 98.5 4.5E-05 9.7E-10 72.9 23.1 42 55-96 10-51 (193)
49 PRK04863 mukB cell division pr 98.5 3E-05 6.5E-10 94.1 26.9 40 189-228 442-481 (1486)
50 KOG0995 Centromere-associated 98.5 1.5E-05 3.3E-10 86.4 21.8 100 127-226 291-390 (581)
51 TIGR03185 DNA_S_dndD DNA sulfu 98.5 3.4E-05 7.4E-10 87.1 25.7 47 51-97 207-253 (650)
52 KOG0994 Extracellular matrix g 98.5 2.7E-05 5.8E-10 89.3 24.3 55 181-235 1688-1742(1758)
53 KOG0976 Rho/Rac1-interacting s 98.5 3.6E-05 7.8E-10 85.6 24.2 64 51-114 97-160 (1265)
54 KOG0995 Centromere-associated 98.5 5E-05 1.1E-09 82.5 24.7 30 50-79 225-254 (581)
55 PRK09039 hypothetical protein; 98.5 3E-05 6.4E-10 81.2 22.5 49 50-98 43-91 (343)
56 KOG1029 Endocytic adaptor prot 98.5 1.4E-05 3E-10 88.6 20.6 30 131-160 487-516 (1118)
57 KOG2991 Splicing regulator [RN 98.5 0.00012 2.5E-09 72.6 24.8 21 102-122 139-159 (330)
58 PF05667 DUF812: Protein of un 98.5 3.7E-05 8E-10 85.7 23.8 48 51-98 319-366 (594)
59 KOG0971 Microtubule-associated 98.4 4.4E-05 9.6E-10 86.0 23.9 17 215-231 460-476 (1243)
60 PF08317 Spc7: Spc7 kinetochor 98.4 1.3E-05 2.9E-10 83.2 18.9 60 107-166 178-238 (325)
61 PF08317 Spc7: Spc7 kinetochor 98.4 9.4E-05 2E-09 76.9 25.2 39 127-165 160-198 (325)
62 TIGR01000 bacteriocin_acc bact 98.4 6.9E-05 1.5E-09 81.1 24.9 31 48-78 92-122 (457)
63 PF15619 Lebercilin: Ciliary p 98.4 0.00013 2.9E-09 70.6 24.1 31 202-232 163-193 (194)
64 KOG0964 Structural maintenance 98.4 4.1E-05 8.8E-10 87.0 23.3 98 139-236 399-500 (1200)
65 PRK01156 chromosome segregatio 98.4 6.3E-05 1.4E-09 87.7 26.2 11 223-233 415-425 (895)
66 PRK01156 chromosome segregatio 98.4 7.5E-05 1.6E-09 87.1 26.4 23 206-228 419-441 (895)
67 COG1579 Zn-ribbon protein, pos 98.4 2.7E-05 5.8E-10 77.3 19.0 155 61-225 11-171 (239)
68 COG5185 HEC1 Protein involved 98.4 4.7E-05 1E-09 80.7 21.7 103 132-234 332-434 (622)
69 COG3883 Uncharacterized protei 98.4 0.00019 4.1E-09 72.1 25.1 50 51-100 29-78 (265)
70 KOG0979 Structural maintenance 98.4 4.7E-05 1E-09 87.0 23.1 124 42-165 155-297 (1072)
71 PF15619 Lebercilin: Ciliary p 98.4 0.00018 3.9E-09 69.6 24.1 16 215-230 169-184 (194)
72 PF09755 DUF2046: Uncharacteri 98.4 0.00048 1E-08 70.5 28.2 169 57-228 24-203 (310)
73 PF10174 Cast: RIM-binding pro 98.4 0.00012 2.7E-09 83.5 26.4 19 175-193 436-454 (775)
74 KOG0980 Actin-binding protein 98.4 0.00012 2.6E-09 82.6 25.5 44 171-214 497-540 (980)
75 KOG4643 Uncharacterized coiled 98.4 1.9E-05 4.1E-10 89.7 19.3 157 49-206 173-332 (1195)
76 KOG0976 Rho/Rac1-interacting s 98.4 0.0001 2.2E-09 82.2 23.8 17 216-232 290-306 (1265)
77 PRK04778 septation ring format 98.3 3E-05 6.5E-10 86.3 20.2 55 179-233 380-434 (569)
78 COG3883 Uncharacterized protei 98.3 0.00041 8.9E-09 69.8 25.9 76 48-123 33-108 (265)
79 PRK04778 septation ring format 98.3 0.0001 2.2E-09 82.1 24.1 37 82-118 257-294 (569)
80 PF12128 DUF3584: Protein of u 98.3 0.00016 3.5E-09 87.0 27.3 51 48-98 602-652 (1201)
81 PF12128 DUF3584: Protein of u 98.3 0.00013 2.7E-09 87.9 26.2 30 202-231 847-876 (1201)
82 PF15070 GOLGA2L5: Putative go 98.3 0.00012 2.7E-09 81.9 24.4 14 220-233 247-260 (617)
83 PF05667 DUF812: Protein of un 98.3 8.2E-05 1.8E-09 82.9 22.7 47 50-96 325-371 (594)
84 PF09730 BicD: Microtubule-ass 98.3 0.00026 5.7E-09 80.0 26.8 101 48-148 36-146 (717)
85 PF05622 HOOK: HOOK protein; 98.3 1.1E-07 2.4E-12 108.2 0.0 70 162-231 350-419 (713)
86 KOG1999 RNA polymerase II tran 98.3 9.9E-06 2.1E-10 92.0 15.4 46 312-359 743-789 (1024)
87 KOG4674 Uncharacterized conser 98.3 0.00014 3.1E-09 88.0 25.7 50 51-100 1234-1283(1822)
88 PF09755 DUF2046: Uncharacteri 98.3 0.00027 5.9E-09 72.3 24.2 44 176-219 157-201 (310)
89 TIGR02680 conserved hypothetic 98.3 0.00013 2.8E-09 88.7 25.5 51 176-226 922-972 (1353)
90 KOG4643 Uncharacterized coiled 98.3 0.00032 6.8E-09 80.2 26.1 43 51-93 413-455 (1195)
91 PF15397 DUF4618: Domain of un 98.3 0.00061 1.3E-08 68.4 25.2 42 83-124 65-106 (258)
92 KOG0980 Actin-binding protein 98.3 0.00023 5E-09 80.4 24.4 53 174-226 493-549 (980)
93 PF04849 HAP1_N: HAP1 N-termin 98.3 4.8E-05 1E-09 77.8 17.6 39 60-98 82-121 (306)
94 PF06160 EzrA: Septation ring 98.3 0.00037 8.1E-09 77.5 26.2 50 49-98 104-153 (560)
95 TIGR03007 pepcterm_ChnLen poly 98.3 0.00015 3.2E-09 79.1 22.7 23 72-94 166-188 (498)
96 KOG4674 Uncharacterized conser 98.3 0.00024 5.3E-09 86.1 26.0 152 51-202 1158-1341(1822)
97 KOG4593 Mitotic checkpoint pro 98.3 0.00038 8.2E-09 77.3 25.4 26 205-230 294-319 (716)
98 KOG0612 Rho-associated, coiled 98.3 0.0001 2.3E-09 85.5 21.9 32 49-80 451-485 (1317)
99 KOG0979 Structural maintenance 98.3 0.00015 3.2E-09 83.0 22.9 27 53-79 195-221 (1072)
100 PF09730 BicD: Microtubule-ass 98.3 0.00028 6E-09 79.8 24.9 148 78-228 31-181 (717)
101 TIGR01843 type_I_hlyD type I s 98.2 0.0002 4.3E-09 75.6 22.8 25 50-74 78-102 (423)
102 smart00787 Spc7 Spc7 kinetocho 98.2 0.00031 6.7E-09 72.7 23.4 64 169-232 219-286 (312)
103 KOG0999 Microtubule-associated 98.2 0.00024 5.2E-09 76.7 22.8 53 47-99 9-75 (772)
104 PF15070 GOLGA2L5: Putative go 98.2 0.00034 7.5E-09 78.4 25.3 42 56-97 25-66 (617)
105 smart00787 Spc7 Spc7 kinetocho 98.2 7.6E-05 1.6E-09 77.2 18.4 26 107-132 173-198 (312)
106 KOG4673 Transcription factor T 98.2 0.00032 6.9E-09 77.4 23.6 55 48-102 404-460 (961)
107 TIGR01843 type_I_hlyD type I s 98.2 0.00023 4.9E-09 75.2 22.4 21 59-79 80-100 (423)
108 PF07926 TPR_MLP1_2: TPR/MLP1/ 98.2 0.00015 3.4E-09 65.8 18.2 49 116-164 45-93 (132)
109 PF06160 EzrA: Septation ring 98.2 8.7E-05 1.9E-09 82.5 19.9 11 173-183 349-359 (560)
110 KOG0978 E3 ubiquitin ligase in 98.2 0.00057 1.2E-08 76.7 25.9 64 172-235 556-619 (698)
111 PF04849 HAP1_N: HAP1 N-termin 98.2 0.00046 1E-08 70.7 23.2 13 109-121 163-175 (306)
112 PF14915 CCDC144C: CCDC144C pr 98.2 0.00076 1.7E-08 68.4 24.3 103 128-230 135-241 (305)
113 KOG0994 Extracellular matrix g 98.2 0.00013 2.8E-09 84.0 20.5 49 186-234 1588-1636(1758)
114 KOG0982 Centrosomal protein Nu 98.2 0.00046 1E-08 72.7 22.8 52 48-99 217-268 (502)
115 KOG0249 LAR-interacting protei 98.2 8.1E-05 1.7E-09 82.3 18.0 38 48-85 93-130 (916)
116 KOG0612 Rho-associated, coiled 98.2 0.00029 6.3E-09 82.0 23.0 17 215-231 672-688 (1317)
117 KOG0999 Microtubule-associated 98.2 0.0007 1.5E-08 73.2 24.4 57 173-229 192-255 (772)
118 COG5185 HEC1 Protein involved 98.2 0.00026 5.6E-09 75.3 20.9 128 106-233 295-426 (622)
119 PF14915 CCDC144C: CCDC144C pr 98.2 0.00084 1.8E-08 68.1 23.8 116 50-165 3-126 (305)
120 KOG1003 Actin filament-coating 98.2 0.00069 1.5E-08 64.9 21.9 174 52-229 3-198 (205)
121 PF12718 Tropomyosin_1: Tropom 98.2 0.00056 1.2E-08 63.1 20.7 28 200-227 112-139 (143)
122 KOG1853 LIS1-interacting prote 98.2 0.00046 1E-08 68.3 21.0 20 210-229 164-183 (333)
123 PF13851 GAS: Growth-arrest sp 98.1 0.0013 2.9E-08 64.0 24.1 39 107-145 70-108 (201)
124 KOG2129 Uncharacterized conser 98.1 0.00028 6E-09 74.0 20.3 100 106-205 158-283 (552)
125 KOG0018 Structural maintenance 98.1 0.00042 9E-09 79.9 23.1 34 65-98 688-721 (1141)
126 TIGR02680 conserved hypothetic 98.1 0.00058 1.2E-08 83.2 26.0 37 48-84 744-780 (1353)
127 KOG0963 Transcription factor/C 98.1 0.00073 1.6E-08 74.3 24.0 24 212-235 319-342 (629)
128 TIGR01005 eps_transp_fam exopo 98.1 0.00043 9.2E-09 79.5 23.5 27 70-96 197-223 (754)
129 PF10481 CENP-F_N: Cenp-F N-te 98.1 0.00012 2.5E-09 73.2 16.1 60 172-231 106-190 (307)
130 PF12718 Tropomyosin_1: Tropom 98.1 0.00034 7.4E-09 64.6 18.2 17 105-121 34-50 (143)
131 KOG0946 ER-Golgi vesicle-tethe 98.1 0.0005 1.1E-08 77.2 22.4 49 49-97 646-694 (970)
132 PF04012 PspA_IM30: PspA/IM30 98.1 0.0013 2.9E-08 64.3 23.3 51 49-99 26-76 (221)
133 KOG0963 Transcription factor/C 98.1 0.0012 2.6E-08 72.7 24.6 97 128-227 233-341 (629)
134 PF05911 DUF869: Plant protein 98.1 0.00014 3E-09 83.0 18.3 116 50-165 593-715 (769)
135 PF05010 TACC: Transforming ac 98.1 0.0037 8.1E-08 61.1 25.7 56 49-104 5-60 (207)
136 KOG1003 Actin filament-coating 98.1 0.0028 6.1E-08 60.8 23.9 51 74-124 11-64 (205)
137 PF15066 CAGE1: Cancer-associa 98.1 0.0013 2.7E-08 70.1 23.4 47 51-98 309-355 (527)
138 PF09728 Taxilin: Myosin-like 98.1 0.002 4.2E-08 66.8 24.6 60 172-231 241-300 (309)
139 PF13851 GAS: Growth-arrest sp 98.1 0.0012 2.6E-08 64.3 21.7 18 215-232 148-165 (201)
140 TIGR03185 DNA_S_dndD DNA sulfu 98.1 0.0006 1.3E-08 77.2 22.7 33 50-82 213-245 (650)
141 TIGR01000 bacteriocin_acc bact 98.0 0.0017 3.8E-08 70.4 25.3 27 207-233 288-314 (457)
142 PF15397 DUF4618: Domain of un 98.0 0.0016 3.4E-08 65.5 22.7 111 55-165 8-134 (258)
143 TIGR03007 pepcterm_ChnLen poly 98.0 0.00052 1.1E-08 74.9 21.1 19 210-228 355-373 (498)
144 PF13514 AAA_27: AAA domain 98.0 0.0011 2.5E-08 79.2 25.4 37 61-97 737-773 (1111)
145 KOG2991 Splicing regulator [RN 98.0 0.0031 6.6E-08 62.8 23.4 50 177-226 259-308 (330)
146 PF05622 HOOK: HOOK protein; 98.0 1.3E-06 2.9E-11 99.4 0.0 81 148-228 343-423 (713)
147 PF09789 DUF2353: Uncharacteri 98.0 0.0054 1.2E-07 63.5 26.1 83 146-228 128-228 (319)
148 PF06818 Fez1: Fez1; InterPro 98.0 0.0013 2.9E-08 63.7 20.4 56 171-226 134-200 (202)
149 PF06008 Laminin_I: Laminin Do 98.0 0.0036 7.8E-08 63.1 24.6 21 46-66 17-37 (264)
150 PF04912 Dynamitin: Dynamitin 98.0 0.0024 5.1E-08 68.0 24.4 25 48-72 89-113 (388)
151 PF06008 Laminin_I: Laminin Do 98.0 0.0027 5.9E-08 64.0 23.6 18 42-59 20-37 (264)
152 COG4477 EzrA Negative regulato 98.0 0.00062 1.4E-08 73.7 19.8 52 178-229 378-429 (570)
153 PF09787 Golgin_A5: Golgin sub 98.0 0.0012 2.7E-08 72.7 22.7 21 130-150 221-241 (511)
154 KOG0978 E3 ubiquitin ligase in 98.0 0.0036 7.7E-08 70.5 26.1 65 170-234 561-625 (698)
155 KOG4673 Transcription factor T 98.0 0.0019 4.1E-08 71.5 23.2 30 48-77 411-440 (961)
156 PF13166 AAA_13: AAA domain 98.0 0.00097 2.1E-08 75.8 22.2 104 131-234 364-469 (712)
157 TIGR01005 eps_transp_fam exopo 97.9 0.0012 2.6E-08 75.9 22.9 26 75-100 195-220 (754)
158 PF13514 AAA_27: AAA domain 97.9 0.0029 6.3E-08 75.8 27.0 46 156-201 789-834 (1111)
159 TIGR03017 EpsF chain length de 97.9 0.0013 2.9E-08 70.5 22.0 25 72-96 176-200 (444)
160 COG0419 SbcC ATPase involved i 97.9 0.0029 6.2E-08 74.3 26.4 32 198-229 405-436 (908)
161 PF09728 Taxilin: Myosin-like 97.9 0.0045 9.9E-08 64.1 24.9 69 51-119 20-91 (309)
162 PF09789 DUF2353: Uncharacteri 97.9 0.00062 1.3E-08 70.3 18.3 110 57-168 69-178 (319)
163 KOG4809 Rab6 GTPase-interactin 97.9 0.0066 1.4E-07 65.9 26.3 66 59-124 330-405 (654)
164 KOG4807 F-actin binding protei 97.9 0.0027 5.9E-08 66.4 22.6 28 202-229 511-538 (593)
165 PLN03229 acetyl-coenzyme A car 97.9 0.00085 1.9E-08 75.5 20.2 18 48-65 431-448 (762)
166 KOG0249 LAR-interacting protei 97.9 0.00026 5.7E-09 78.4 15.8 45 186-230 213-257 (916)
167 PF14073 Cep57_CLD: Centrosome 97.9 0.0059 1.3E-07 58.1 22.7 169 54-228 5-173 (178)
168 KOG4593 Mitotic checkpoint pro 97.9 0.0048 1E-07 68.8 25.4 74 49-122 94-167 (716)
169 PRK11281 hypothetical protein; 97.9 0.0011 2.5E-08 78.6 21.9 28 194-221 225-252 (1113)
170 TIGR00634 recN DNA repair prot 97.9 0.0022 4.7E-08 71.5 22.9 43 52-94 160-202 (563)
171 TIGR02977 phageshock_pspA phag 97.9 0.0043 9.3E-08 61.1 22.5 48 50-97 28-75 (219)
172 PF07926 TPR_MLP1_2: TPR/MLP1/ 97.9 0.0015 3.3E-08 59.3 17.8 93 62-161 5-97 (132)
173 COG0419 SbcC ATPase involved i 97.9 0.0044 9.5E-08 72.8 26.1 44 191-234 391-434 (908)
174 PF10168 Nup88: Nuclear pore c 97.9 0.001 2.2E-08 76.0 20.0 30 204-233 686-715 (717)
175 PRK10698 phage shock protein P 97.9 0.0038 8.2E-08 61.7 21.7 47 50-96 28-74 (222)
176 KOG4572 Predicted DNA-binding 97.8 0.0014 3E-08 73.5 20.0 52 182-235 1059-1110(1424)
177 PF06818 Fez1: Fez1; InterPro 97.8 0.004 8.6E-08 60.4 20.9 25 176-200 132-156 (202)
178 KOG4360 Uncharacterized coiled 97.8 0.0021 4.6E-08 69.2 20.7 35 63-97 86-120 (596)
179 PF12325 TMF_TATA_bd: TATA ele 97.8 0.00091 2E-08 60.0 15.1 68 127-194 20-87 (120)
180 PF13870 DUF4201: Domain of un 97.8 0.0081 1.8E-07 57.0 22.6 30 204-233 146-175 (177)
181 PF13870 DUF4201: Domain of un 97.8 0.0064 1.4E-07 57.7 21.9 22 203-224 152-173 (177)
182 KOG0260 RNA polymerase II, lar 97.8 0.00058 1.3E-08 79.1 17.0 12 65-76 925-936 (1605)
183 PF10168 Nup88: Nuclear pore c 97.8 0.0015 3.2E-08 74.7 20.4 27 200-226 689-715 (717)
184 TIGR00634 recN DNA repair prot 97.8 0.0051 1.1E-07 68.6 24.4 45 57-101 158-202 (563)
185 PRK10929 putative mechanosensi 97.8 0.0097 2.1E-07 70.8 27.6 77 47-123 103-197 (1109)
186 KOG0946 ER-Golgi vesicle-tethe 97.8 0.0024 5.2E-08 72.0 21.1 29 181-209 854-882 (970)
187 PLN03229 acetyl-coenzyme A car 97.8 0.004 8.6E-08 70.3 22.9 16 49-64 458-473 (762)
188 PF12815 CTD: Spt5 C-terminal 97.8 4.6E-06 9.9E-11 75.0 0.0 18 432-449 103-121 (123)
189 PF13166 AAA_13: AAA domain 97.8 0.003 6.5E-08 71.8 22.7 104 126-229 366-471 (712)
190 PRK10869 recombination and rep 97.8 0.0027 5.8E-08 70.7 21.6 28 198-225 343-370 (553)
191 PF10212 TTKRSYEDQ: Predicted 97.8 0.0031 6.8E-08 68.6 21.2 93 132-230 422-514 (518)
192 PF05483 SCP-1: Synaptonemal c 97.8 0.012 2.7E-07 65.4 25.9 12 216-227 635-646 (786)
193 PF10481 CENP-F_N: Cenp-F N-te 97.8 0.0021 4.7E-08 64.3 18.4 27 198-224 164-190 (307)
194 KOG2129 Uncharacterized conser 97.8 0.0033 7.2E-08 66.2 20.4 23 103-125 198-220 (552)
195 PLN02939 transferase, transfer 97.8 0.004 8.7E-08 72.6 23.2 26 67-92 156-181 (977)
196 KOG0018 Structural maintenance 97.8 0.0035 7.6E-08 72.5 22.2 35 128-162 315-349 (1141)
197 PRK10246 exonuclease subunit S 97.8 0.0098 2.1E-07 71.0 27.1 37 52-88 529-565 (1047)
198 PF04111 APG6: Autophagy prote 97.8 0.00045 9.8E-09 71.6 14.0 55 177-231 80-134 (314)
199 TIGR03017 EpsF chain length de 97.8 0.01 2.2E-07 63.8 24.9 34 69-102 166-199 (444)
200 COG1842 PspA Phage shock prote 97.8 0.0052 1.1E-07 60.9 20.7 48 49-96 27-74 (225)
201 PF15254 CCDC14: Coiled-coil d 97.8 0.0047 1E-07 69.5 22.4 19 79-97 392-410 (861)
202 PRK11281 hypothetical protein; 97.7 0.0074 1.6E-07 71.9 25.4 51 49-99 124-181 (1113)
203 PF05483 SCP-1: Synaptonemal c 97.7 0.0097 2.1E-07 66.2 24.4 36 191-226 522-557 (786)
204 PF03148 Tektin: Tektin family 97.7 0.014 3E-07 62.2 25.2 38 49-86 60-97 (384)
205 KOG4360 Uncharacterized coiled 97.7 0.0016 3.4E-08 70.2 17.6 34 63-96 93-126 (596)
206 KOG0982 Centrosomal protein Nu 97.7 0.0094 2E-07 63.1 22.9 11 59-69 221-231 (502)
207 PF12325 TMF_TATA_bd: TATA ele 97.7 0.0017 3.7E-08 58.3 15.2 84 128-211 28-111 (120)
208 KOG1999 RNA polymerase II tran 97.7 0.0011 2.5E-08 75.8 16.7 21 333-353 779-799 (1024)
209 KOG4807 F-actin binding protei 97.7 0.0096 2.1E-07 62.4 22.0 57 175-231 519-579 (593)
210 KOG0962 DNA repair protein RAD 97.7 0.0033 7.2E-08 74.5 20.8 27 170-196 880-906 (1294)
211 PF15035 Rootletin: Ciliary ro 97.7 0.0062 1.3E-07 58.5 19.3 114 54-167 3-118 (182)
212 PF15066 CAGE1: Cancer-associa 97.7 0.02 4.3E-07 61.3 24.5 28 55-82 326-353 (527)
213 PRK10929 putative mechanosensi 97.7 0.0045 9.7E-08 73.6 21.8 15 45-59 22-36 (1109)
214 PF11559 ADIP: Afadin- and alp 97.7 0.0061 1.3E-07 56.4 18.4 118 103-226 32-149 (151)
215 PF05911 DUF869: Plant protein 97.6 0.018 3.9E-07 66.2 25.7 53 174-226 154-206 (769)
216 COG4477 EzrA Negative regulato 97.6 0.013 2.8E-07 63.8 23.1 39 48-86 106-144 (570)
217 KOG1103 Predicted coiled-coil 97.6 0.018 3.9E-07 59.7 23.0 45 176-227 246-290 (561)
218 PF07111 HCR: Alpha helical co 97.6 0.022 4.9E-07 63.7 25.3 27 44-70 469-495 (739)
219 KOG1937 Uncharacterized conser 97.6 0.013 2.8E-07 62.5 22.3 28 55-82 236-263 (521)
220 cd00176 SPEC Spectrin repeats, 97.6 0.012 2.7E-07 54.9 20.3 85 149-233 118-209 (213)
221 PF06705 SF-assemblin: SF-asse 97.6 0.056 1.2E-06 54.1 26.1 11 216-226 203-213 (247)
222 PF09787 Golgin_A5: Golgin sub 97.6 0.0093 2E-07 65.8 22.3 34 126-159 277-310 (511)
223 PRK10246 exonuclease subunit S 97.6 0.024 5.1E-07 67.8 26.7 41 49-89 533-573 (1047)
224 cd07596 BAR_SNX The Bin/Amphip 97.6 0.063 1.4E-06 51.3 25.0 27 169-195 146-172 (218)
225 PF15254 CCDC14: Coiled-coil d 97.6 0.0053 1.2E-07 69.0 19.6 21 72-92 392-412 (861)
226 PF10498 IFT57: Intra-flagella 97.6 0.0029 6.3E-08 66.7 16.9 20 207-226 332-351 (359)
227 PF08614 ATG16: Autophagy prot 97.6 0.0011 2.4E-08 64.0 12.6 35 177-211 146-180 (194)
228 PF06705 SF-assemblin: SF-asse 97.6 0.085 1.8E-06 52.8 26.6 7 53-59 12-18 (247)
229 COG0497 RecN ATPase involved i 97.6 0.0065 1.4E-07 67.1 19.9 28 60-87 164-191 (557)
230 KOG1937 Uncharacterized conser 97.6 0.012 2.5E-07 62.8 20.8 29 205-233 457-485 (521)
231 KOG0993 Rab5 GTPase effector R 97.6 0.03 6.4E-07 59.2 23.5 75 49-123 288-362 (542)
232 PLN02939 transferase, transfer 97.6 0.012 2.5E-07 68.9 22.7 27 73-99 155-181 (977)
233 PF05557 MAD: Mitotic checkpoi 97.5 1.8E-05 3.9E-10 90.4 0.0 58 177-234 259-322 (722)
234 cd07627 BAR_Vps5p The Bin/Amph 97.5 0.11 2.3E-06 51.1 26.7 28 169-196 144-171 (216)
235 PF15294 Leu_zip: Leucine zipp 97.5 0.0021 4.6E-08 65.1 14.5 43 55-97 127-169 (278)
236 PF15035 Rootletin: Ciliary ro 97.5 0.022 4.7E-07 54.8 20.7 111 52-162 8-120 (182)
237 COG2433 Uncharacterized conser 97.5 0.0033 7.2E-08 69.1 16.9 34 175-208 474-507 (652)
238 PRK10698 phage shock protein P 97.5 0.033 7.2E-07 55.1 22.7 10 222-231 206-215 (222)
239 PF05010 TACC: Transforming ac 97.5 0.058 1.3E-06 52.8 23.9 98 126-229 100-201 (207)
240 PF12815 CTD: Spt5 C-terminal 97.5 2.1E-05 4.6E-10 70.7 0.0 6 351-356 34-39 (123)
241 PRK10869 recombination and rep 97.5 0.022 4.8E-07 63.5 23.7 41 54-94 158-198 (553)
242 PRK09841 cryptic autophosphory 97.5 0.0054 1.2E-07 70.4 19.3 46 147-192 342-387 (726)
243 TIGR02977 phageshock_pspA phag 97.5 0.018 3.9E-07 56.6 20.4 12 75-86 39-50 (219)
244 PRK10361 DNA recombination pro 97.5 0.042 9E-07 59.9 24.7 53 108-160 69-122 (475)
245 PF10186 Atg14: UV radiation r 97.5 0.0088 1.9E-07 60.4 18.7 22 76-97 22-43 (302)
246 KOG1899 LAR transmembrane tyro 97.5 0.0032 6.9E-08 69.2 16.0 14 216-229 294-307 (861)
247 KOG4438 Centromere-associated 97.5 0.034 7.4E-07 59.1 23.1 36 127-162 245-280 (446)
248 PF12795 MscS_porin: Mechanose 97.5 0.051 1.1E-06 54.1 23.5 33 63-95 34-66 (240)
249 PF07798 DUF1640: Protein of u 97.5 0.014 2.9E-07 55.7 18.6 16 216-231 137-152 (177)
250 PF04012 PspA_IM30: PspA/IM30 97.5 0.022 4.7E-07 55.8 20.5 6 224-229 210-215 (221)
251 smart00806 AIP3 Actin interact 97.5 0.039 8.6E-07 58.9 23.5 87 142-228 215-321 (426)
252 KOG0804 Cytoplasmic Zn-finger 97.5 0.0051 1.1E-07 65.5 16.6 42 127-168 358-399 (493)
253 KOG1103 Predicted coiled-coil 97.5 0.016 3.6E-07 59.9 19.8 31 201-231 257-287 (561)
254 PF00015 MCPsignal: Methyl-acc 97.4 0.054 1.2E-06 51.6 22.6 17 106-122 82-98 (213)
255 PF03148 Tektin: Tektin family 97.4 0.073 1.6E-06 56.8 25.7 41 191-231 253-293 (384)
256 PF10186 Atg14: UV radiation r 97.4 0.015 3.3E-07 58.6 19.8 21 54-74 21-41 (302)
257 KOG1655 Protein involved in va 97.4 0.016 3.5E-07 55.6 18.2 19 205-223 160-178 (218)
258 PF15450 DUF4631: Domain of un 97.4 0.025 5.5E-07 61.4 21.8 110 85-194 355-474 (531)
259 COG2433 Uncharacterized conser 97.4 0.009 2E-07 65.8 18.5 8 239-246 539-546 (652)
260 PF07111 HCR: Alpha helical co 97.4 0.019 4.1E-07 64.3 21.1 42 55-96 68-109 (739)
261 PF15294 Leu_zip: Leucine zipp 97.4 0.049 1.1E-06 55.4 22.3 104 128-234 130-246 (278)
262 KOG0962 DNA repair protein RAD 97.4 0.062 1.3E-06 64.2 26.2 18 44-61 163-180 (1294)
263 KOG3091 Nuclear pore complex, 97.4 0.0099 2.1E-07 64.1 18.0 38 43-80 327-368 (508)
264 COG3096 MukB Uncharacterized p 97.4 0.037 8E-07 62.2 22.6 103 127-229 1002-1113(1480)
265 KOG0243 Kinesin-like protein [ 97.4 0.023 4.9E-07 66.4 21.9 14 46-59 369-382 (1041)
266 KOG2196 Nuclear porin [Nuclear 97.4 0.024 5.2E-07 56.2 19.0 50 49-98 74-123 (254)
267 KOG4403 Cell surface glycoprot 97.4 0.0046 1E-07 65.4 14.9 51 111-161 240-290 (575)
268 PF01442 Apolipoprotein: Apoli 97.4 0.13 2.8E-06 47.9 24.7 19 51-69 3-21 (202)
269 PF03915 AIP3: Actin interacti 97.4 0.0062 1.3E-07 65.5 16.2 95 135-229 211-318 (424)
270 PRK11519 tyrosine kinase; Prov 97.3 0.013 2.9E-07 67.1 19.9 26 74-99 267-292 (719)
271 PF04111 APG6: Autophagy prote 97.3 0.0034 7.4E-08 65.1 13.8 27 198-224 108-134 (314)
272 COG1842 PspA Phage shock prote 97.3 0.051 1.1E-06 53.9 21.1 27 134-160 103-129 (225)
273 PF12252 SidE: Dot/Icm substra 97.3 0.011 2.4E-07 68.3 18.3 43 78-120 1067-1117(1439)
274 KOG4687 Uncharacterized coiled 97.3 0.027 5.9E-07 56.7 19.1 46 190-235 161-206 (389)
275 cd07664 BAR_SNX2 The Bin/Amphi 97.3 0.18 4E-06 50.3 25.0 30 169-198 160-189 (234)
276 PF14988 DUF4515: Domain of un 97.3 0.14 3E-06 50.2 23.7 29 197-225 171-199 (206)
277 cd07624 BAR_SNX7_30 The Bin/Am 97.3 0.17 3.8E-06 49.0 24.2 44 49-92 17-60 (200)
278 cd07667 BAR_SNX30 The Bin/Amph 97.3 0.25 5.3E-06 49.6 25.7 73 139-216 148-220 (240)
279 KOG4438 Centromere-associated 97.3 0.11 2.3E-06 55.4 23.9 14 132-145 257-270 (446)
280 PF12777 MT: Microtubule-bindi 97.3 0.018 3.9E-07 60.4 18.4 59 175-233 221-279 (344)
281 PF09738 DUF2051: Double stran 97.3 0.024 5.3E-07 58.5 18.9 92 48-146 79-170 (302)
282 PF15450 DUF4631: Domain of un 97.3 0.12 2.6E-06 56.4 24.6 16 214-229 452-467 (531)
283 PF12252 SidE: Dot/Icm substra 97.3 0.039 8.5E-07 64.0 21.8 26 71-96 1128-1153(1439)
284 PF10234 Cluap1: Clusterin-ass 97.3 0.045 9.8E-07 55.5 20.3 46 125-170 171-216 (267)
285 PF12795 MscS_porin: Mechanose 97.2 0.12 2.5E-06 51.6 23.0 38 65-102 29-66 (240)
286 PF01576 Myosin_tail_1: Myosin 97.2 7E-05 1.5E-09 87.1 0.0 14 214-227 522-535 (859)
287 PF15290 Syntaphilin: Golgi-lo 97.2 0.012 2.6E-07 59.3 15.7 25 177-201 119-143 (305)
288 PF08614 ATG16: Autophagy prot 97.2 0.0027 5.9E-08 61.2 11.0 72 47-122 68-139 (194)
289 COG4913 Uncharacterized protei 97.2 0.051 1.1E-06 61.1 21.7 21 172-192 780-800 (1104)
290 KOG4677 Golgi integral membran 97.2 0.074 1.6E-06 56.9 22.0 14 110-123 235-248 (554)
291 PRK10361 DNA recombination pro 97.2 0.1 2.2E-06 56.9 23.9 26 201-226 170-195 (475)
292 PF09325 Vps5: Vps5 C terminal 97.2 0.076 1.6E-06 51.9 21.2 57 139-195 123-190 (236)
293 KOG4677 Golgi integral membran 97.2 0.034 7.4E-07 59.3 19.3 18 216-233 444-461 (554)
294 PF14992 TMCO5: TMCO5 family 97.2 0.011 2.3E-07 60.1 15.0 60 62-121 13-78 (280)
295 PF10498 IFT57: Intra-flagella 97.2 0.02 4.3E-07 60.5 17.6 21 212-232 330-350 (359)
296 KOG1899 LAR transmembrane tyro 97.2 0.025 5.5E-07 62.4 18.5 43 50-92 108-150 (861)
297 PF08580 KAR9: Yeast cortical 97.2 0.098 2.1E-06 59.7 24.1 25 73-97 49-73 (683)
298 KOG0243 Kinesin-like protein [ 97.2 0.064 1.4E-06 62.8 22.6 20 59-78 447-466 (1041)
299 PF06785 UPF0242: Uncharacteri 97.2 0.035 7.5E-07 57.3 18.3 34 128-161 139-172 (401)
300 PF05384 DegS: Sensor protein 97.2 0.15 3.2E-06 48.1 21.2 17 134-150 95-111 (159)
301 KOG1850 Myosin-like coiled-coi 97.2 0.38 8.2E-06 49.7 25.4 34 199-232 232-265 (391)
302 KOG0239 Kinesin (KAR3 subfamil 97.2 0.025 5.4E-07 64.3 19.1 58 176-233 256-316 (670)
303 COG5074 t-SNARE complex subuni 97.1 0.16 3.5E-06 50.2 21.8 29 51-79 23-51 (280)
304 KOG3958 Putative dynamitin [Cy 97.1 0.22 4.7E-06 50.9 23.2 24 52-75 93-116 (371)
305 KOG0239 Kinesin (KAR3 subfamil 97.1 0.019 4.2E-07 65.2 17.8 50 171-220 244-293 (670)
306 cd07665 BAR_SNX1 The Bin/Amphi 97.1 0.36 7.8E-06 48.3 24.8 28 169-196 160-187 (234)
307 cd07627 BAR_Vps5p The Bin/Amph 97.1 0.2 4.3E-06 49.2 22.6 71 133-203 97-171 (216)
308 PTZ00464 SNF-7-like protein; P 97.1 0.12 2.5E-06 50.9 20.8 23 51-73 16-38 (211)
309 KOG4302 Microtubule-associated 97.1 0.077 1.7E-06 59.9 21.8 33 130-162 160-192 (660)
310 COG3096 MukB Uncharacterized p 97.1 0.16 3.6E-06 57.3 23.8 65 55-119 838-906 (1480)
311 PF14992 TMCO5: TMCO5 family 97.1 0.024 5.3E-07 57.6 16.1 35 65-99 9-43 (280)
312 KOG0810 SNARE protein Syntaxin 97.1 0.18 3.9E-06 52.0 22.7 59 170-228 194-259 (297)
313 KOG0993 Rab5 GTPase effector R 97.1 0.2 4.4E-06 53.1 23.0 86 36-121 277-378 (542)
314 cd07599 BAR_Rvs167p The Bin/Am 97.1 0.17 3.7E-06 49.4 21.7 48 48-95 4-51 (216)
315 cd07664 BAR_SNX2 The Bin/Amphi 97.0 0.41 8.9E-06 47.8 27.3 65 138-202 120-186 (234)
316 PF00769 ERM: Ezrin/radixin/mo 97.0 0.043 9.4E-07 55.1 17.7 29 136-164 39-67 (246)
317 PRK09841 cryptic autophosphory 97.0 0.0094 2E-07 68.4 14.6 55 153-207 341-395 (726)
318 cd07666 BAR_SNX7 The Bin/Amphi 97.0 0.24 5.1E-06 49.8 22.6 87 134-226 146-233 (243)
319 PF06785 UPF0242: Uncharacteri 97.0 0.08 1.7E-06 54.7 19.3 16 215-230 246-261 (401)
320 PF11559 ADIP: Afadin- and alp 97.0 0.042 9.2E-07 50.7 16.1 41 55-95 33-73 (151)
321 KOG0992 Uncharacterized conser 97.0 0.29 6.3E-06 53.2 24.1 17 215-231 401-417 (613)
322 KOG2008 BTK-associated SH3-dom 97.0 0.12 2.7E-06 53.0 20.2 27 220-246 193-219 (426)
323 PF09738 DUF2051: Double stran 97.0 0.068 1.5E-06 55.2 18.9 56 43-98 81-136 (302)
324 PF05700 BCAS2: Breast carcino 97.0 0.027 5.9E-07 55.6 15.4 12 49-60 63-74 (221)
325 PF05278 PEARLI-4: Arabidopsis 97.0 0.039 8.4E-07 55.8 16.2 62 170-231 202-263 (269)
326 PF00769 ERM: Ezrin/radixin/mo 97.0 0.036 7.8E-07 55.7 16.2 35 128-162 80-114 (246)
327 COG3206 GumC Uncharacterized p 96.9 0.056 1.2E-06 58.7 18.9 22 50-71 199-220 (458)
328 KOG0811 SNARE protein PEP12/VA 96.9 0.19 4.1E-06 51.2 21.3 53 177-229 182-234 (269)
329 PF06637 PV-1: PV-1 protein (P 96.9 0.39 8.5E-06 50.6 23.8 24 207-230 353-376 (442)
330 KOG2685 Cystoskeletal protein 96.9 0.22 4.8E-06 53.0 22.4 39 196-234 278-316 (421)
331 PF13805 Pil1: Eisosome compon 96.9 0.51 1.1E-05 48.0 24.2 56 136-195 137-192 (271)
332 PRK11519 tyrosine kinase; Prov 96.9 0.016 3.5E-07 66.5 15.4 22 182-203 370-391 (719)
333 KOG4572 Predicted DNA-binding 96.9 0.07 1.5E-06 60.5 19.4 100 127-228 999-1110(1424)
334 COG4487 Uncharacterized protei 96.9 0.41 8.9E-06 51.5 24.5 21 206-226 187-207 (438)
335 cd07651 F-BAR_PombeCdc15_like 96.9 0.31 6.8E-06 48.3 22.5 18 60-77 22-39 (236)
336 PF04912 Dynamitin: Dynamitin 96.9 0.059 1.3E-06 57.4 18.5 51 177-230 338-388 (388)
337 cd07623 BAR_SNX1_2 The Bin/Amp 96.9 0.5 1.1E-05 46.7 25.5 29 169-197 150-178 (224)
338 KOG4403 Cell surface glycoprot 96.9 0.086 1.9E-06 56.1 18.7 16 130-145 309-324 (575)
339 PF11932 DUF3450: Protein of u 96.9 0.056 1.2E-06 54.2 17.1 53 127-179 53-105 (251)
340 KOG3091 Nuclear pore complex, 96.9 0.039 8.5E-07 59.7 16.6 30 180-209 464-493 (508)
341 PRK03947 prefoldin subunit alp 96.9 0.014 3.1E-07 53.2 11.8 38 192-229 97-134 (140)
342 PRK10884 SH3 domain-containing 96.9 0.011 2.5E-07 57.7 11.7 32 134-165 136-167 (206)
343 PF05384 DegS: Sensor protein 96.9 0.14 3.1E-06 48.2 18.4 11 217-227 140-150 (159)
344 KOG0804 Cytoplasmic Zn-finger 96.9 0.066 1.4E-06 57.3 17.9 37 128-164 366-402 (493)
345 KOG0992 Uncharacterized conser 96.9 0.24 5.2E-06 53.8 22.0 13 221-233 400-412 (613)
346 KOG2273 Membrane coat complex 96.8 0.29 6.2E-06 53.8 23.6 23 52-74 273-295 (503)
347 PRK09343 prefoldin subunit bet 96.8 0.021 4.5E-07 51.3 12.0 32 198-229 80-111 (121)
348 PF05276 SH3BP5: SH3 domain-bi 96.8 0.65 1.4E-05 46.6 26.7 50 45-97 6-55 (239)
349 KOG3478 Prefoldin subunit 6, K 96.8 0.04 8.7E-07 48.4 13.0 40 195-234 75-114 (120)
350 KOG0288 WD40 repeat protein Ti 96.8 0.058 1.2E-06 57.2 16.7 11 128-138 60-70 (459)
351 PTZ00464 SNF-7-like protein; P 96.8 0.16 3.4E-06 50.0 19.0 31 49-79 21-51 (211)
352 PF14073 Cep57_CLD: Centrosome 96.8 0.52 1.1E-05 45.1 22.5 30 49-78 7-36 (178)
353 cd07672 F-BAR_PSTPIP2 The F-BA 96.8 0.68 1.5E-05 46.4 23.6 61 175-235 154-219 (240)
354 PRK10476 multidrug resistance 96.8 0.031 6.6E-07 58.3 14.7 18 212-229 192-209 (346)
355 PF05276 SH3BP5: SH3 domain-bi 96.8 0.54 1.2E-05 47.1 22.6 19 72-90 19-37 (239)
356 COG0497 RecN ATPase involved i 96.8 0.14 3E-06 56.9 20.0 8 206-213 352-359 (557)
357 PF10212 TTKRSYEDQ: Predicted 96.8 0.19 4E-06 55.2 20.7 47 49-97 305-353 (518)
358 TIGR03794 NHPM_micro_HlyD NHPM 96.8 0.11 2.4E-06 55.7 19.2 24 204-227 228-251 (421)
359 TIGR02971 heterocyst_DevB ABC 96.8 0.088 1.9E-06 54.2 17.7 24 206-229 182-205 (327)
360 PF05149 Flagellar_rod: Parafl 96.8 0.56 1.2E-05 48.2 23.0 20 107-126 60-79 (289)
361 KOG4637 Adaptor for phosphoino 96.7 0.2 4.3E-06 52.6 19.7 50 48-97 134-183 (464)
362 COG4717 Uncharacterized conser 96.7 0.52 1.1E-05 54.3 24.6 28 204-231 775-802 (984)
363 PF11932 DUF3450: Protein of u 96.7 0.11 2.4E-06 52.0 17.8 34 128-161 82-115 (251)
364 PF10267 Tmemb_cc2: Predicted 96.7 0.042 9.1E-07 58.7 15.4 97 127-223 216-318 (395)
365 TIGR03794 NHPM_micro_HlyD NHPM 96.7 0.14 3.1E-06 54.8 19.7 25 209-233 226-250 (421)
366 cd07666 BAR_SNX7 The Bin/Amphi 96.7 0.79 1.7E-05 46.1 25.8 6 211-216 225-230 (243)
367 PF09325 Vps5: Vps5 C terminal 96.7 0.67 1.5E-05 45.3 27.0 10 134-143 139-148 (236)
368 cd07648 F-BAR_FCHO The F-BAR ( 96.7 0.71 1.5E-05 46.4 23.4 16 215-230 220-235 (261)
369 COG4717 Uncharacterized conser 96.7 0.24 5.2E-06 56.9 21.5 64 39-102 174-240 (984)
370 COG1322 Predicted nuclease of 96.7 0.84 1.8E-05 49.8 25.0 31 204-234 158-188 (448)
371 COG4913 Uncharacterized protei 96.7 0.27 5.8E-06 55.6 21.4 14 215-228 861-874 (1104)
372 COG1382 GimC Prefoldin, chaper 96.7 0.025 5.3E-07 50.7 11.1 33 196-228 77-109 (119)
373 KOG2196 Nuclear porin [Nuclear 96.7 0.22 4.7E-06 49.6 18.6 23 199-221 222-244 (254)
374 COG4026 Uncharacterized protei 96.7 0.081 1.8E-06 52.0 15.4 76 135-213 133-208 (290)
375 PLN03188 kinesin-12 family pro 96.7 0.39 8.4E-06 57.5 23.7 43 54-97 1046-1088(1320)
376 COG1382 GimC Prefoldin, chaper 96.6 0.053 1.2E-06 48.5 13.0 40 196-235 70-109 (119)
377 PF04582 Reo_sigmaC: Reovirus 96.6 0.0031 6.8E-08 65.2 6.0 17 176-192 113-129 (326)
378 PF12072 DUF3552: Domain of un 96.6 0.73 1.6E-05 44.8 23.8 13 86-98 58-70 (201)
379 PF04949 Transcrip_act: Transc 96.6 0.25 5.4E-06 45.7 17.4 49 174-222 97-145 (159)
380 PF05769 DUF837: Protein of un 96.6 0.71 1.5E-05 44.4 22.6 21 206-226 156-176 (181)
381 smart00806 AIP3 Actin interact 96.6 0.28 6.1E-06 52.6 20.5 19 59-77 154-172 (426)
382 PF09304 Cortex-I_coil: Cortex 96.6 0.17 3.7E-06 44.4 15.6 28 177-204 60-87 (107)
383 KOG0972 Huntingtin interacting 96.6 0.053 1.1E-06 55.1 14.2 17 176-192 309-325 (384)
384 PF01540 Lipoprotein_7: Adhesi 96.6 0.96 2.1E-05 45.7 23.1 24 50-73 94-117 (353)
385 PF05816 TelA: Toxic anion res 96.6 0.89 1.9E-05 47.6 24.0 17 190-206 282-298 (333)
386 PRK09343 prefoldin subunit bet 96.6 0.072 1.6E-06 47.8 13.7 18 186-203 82-99 (121)
387 TIGR02971 heterocyst_DevB ABC 96.6 0.11 2.4E-06 53.5 17.2 24 211-234 180-203 (327)
388 COG3206 GumC Uncharacterized p 96.6 0.26 5.7E-06 53.5 20.7 22 71-92 199-220 (458)
389 PF04740 LXG: LXG domain of WX 96.6 0.76 1.7E-05 44.1 22.1 22 192-213 148-169 (204)
390 KOG4687 Uncharacterized coiled 96.6 0.41 8.9E-06 48.5 20.0 27 205-231 227-253 (389)
391 cd07588 BAR_Amphiphysin The Bi 96.6 0.88 1.9E-05 44.8 25.5 31 49-79 15-45 (211)
392 TIGR02338 gimC_beta prefoldin, 96.6 0.037 8E-07 48.7 11.5 23 132-154 12-34 (110)
393 KOG3647 Predicted coiled-coil 96.6 0.34 7.4E-06 48.9 19.3 46 125-170 114-159 (338)
394 cd00632 Prefoldin_beta Prefold 96.6 0.025 5.4E-07 49.3 10.3 27 202-228 76-102 (105)
395 PF04582 Reo_sigmaC: Reovirus 96.5 0.0034 7.3E-08 65.0 5.4 45 187-231 110-154 (326)
396 TIGR02338 gimC_beta prefoldin, 96.5 0.065 1.4E-06 47.1 12.9 25 136-160 9-33 (110)
397 KOG3771 Amphiphysin [Intracell 96.5 1.6 3.5E-05 47.3 30.1 26 52-77 29-54 (460)
398 KOG4460 Nuclear pore complex, 96.5 0.21 4.5E-06 54.7 18.7 28 135-162 660-687 (741)
399 PF04949 Transcrip_act: Transc 96.5 0.25 5.5E-06 45.6 16.6 14 107-120 85-98 (159)
400 KOG4603 TBP-1 interacting prot 96.5 0.11 2.3E-06 49.2 14.5 66 132-198 81-146 (201)
401 KOG4302 Microtubule-associated 96.5 0.091 2E-06 59.3 16.7 86 127-212 100-197 (660)
402 cd07596 BAR_SNX The Bin/Amphip 96.5 0.82 1.8E-05 43.6 26.8 65 139-203 105-173 (218)
403 PF07058 Myosin_HC-like: Myosi 96.5 0.26 5.5E-06 50.6 18.2 16 220-235 146-161 (351)
404 PF12777 MT: Microtubule-bindi 96.5 0.78 1.7E-05 48.2 22.6 45 176-220 236-280 (344)
405 PRK03947 prefoldin subunit alp 96.5 0.065 1.4E-06 48.9 12.8 33 193-225 105-137 (140)
406 cd07653 F-BAR_CIP4-like The F- 96.5 0.98 2.1E-05 44.9 22.3 11 204-214 209-219 (251)
407 PF04108 APG17: Autophagy prot 96.4 1.8 3.8E-05 46.8 25.7 23 102-124 251-273 (412)
408 PRK10476 multidrug resistance 96.4 0.083 1.8E-06 55.1 15.2 10 54-63 87-96 (346)
409 COG5293 Predicted ATPase [Gene 96.4 0.64 1.4E-05 50.2 21.4 16 48-63 195-210 (591)
410 PF09731 Mitofilin: Mitochondr 96.4 0.61 1.3E-05 52.2 22.9 14 220-233 408-421 (582)
411 cd07675 F-BAR_FNBP1L The F-BAR 96.4 0.71 1.5E-05 46.6 20.9 31 198-228 204-234 (252)
412 PF07889 DUF1664: Protein of u 96.4 0.077 1.7E-06 48.1 12.6 54 106-162 68-121 (126)
413 KOG0811 SNARE protein PEP12/VA 96.4 0.43 9.3E-06 48.6 19.4 60 177-236 175-234 (269)
414 KOG0972 Huntingtin interacting 96.4 0.3 6.6E-06 49.8 17.9 14 173-186 313-326 (384)
415 PF15290 Syntaphilin: Golgi-lo 96.4 0.093 2E-06 53.1 14.2 31 71-101 72-102 (305)
416 KOG1962 B-cell receptor-associ 96.4 0.056 1.2E-06 53.1 12.5 61 173-233 149-209 (216)
417 PF06120 Phage_HK97_TLTM: Tail 96.4 0.96 2.1E-05 46.8 22.0 21 53-73 41-61 (301)
418 KOG4787 Uncharacterized conser 96.4 0.28 6.2E-06 54.1 18.8 32 48-79 334-365 (852)
419 KOG4460 Nuclear pore complex, 96.4 0.085 1.8E-06 57.7 14.7 8 89-96 603-610 (741)
420 PF06120 Phage_HK97_TLTM: Tail 96.3 0.41 8.8E-06 49.5 19.1 11 72-82 53-63 (301)
421 PF01920 Prefoldin_2: Prefoldi 96.3 0.073 1.6E-06 45.6 11.8 11 180-190 67-77 (106)
422 PLN03188 kinesin-12 family pro 96.3 1.2 2.5E-05 53.6 24.8 21 77-97 1082-1102(1320)
423 KOG0579 Ste20-like serine/thre 96.3 2 4.3E-05 48.7 25.1 187 47-233 803-1036(1187)
424 PF07106 TBPIP: Tat binding pr 96.3 0.035 7.6E-07 52.3 10.4 59 136-195 78-136 (169)
425 COG5293 Predicted ATPase [Gene 96.3 0.35 7.5E-06 52.1 18.5 22 53-75 193-214 (591)
426 PF02994 Transposase_22: L1 tr 96.2 0.0076 1.7E-07 63.9 6.2 38 198-235 153-190 (370)
427 PF13863 DUF4200: Domain of un 96.2 0.35 7.5E-06 43.0 16.1 28 200-227 78-105 (126)
428 cd00890 Prefoldin Prefoldin is 96.2 0.055 1.2E-06 48.1 10.9 38 192-229 90-127 (129)
429 PF09311 Rab5-bind: Rabaptin-l 96.2 0.0054 1.2E-07 58.7 4.6 69 53-121 8-79 (181)
430 COG1730 GIM5 Predicted prefold 96.2 0.095 2.1E-06 48.6 12.5 44 189-232 94-137 (145)
431 PF09744 Jnk-SapK_ap_N: JNK_SA 96.2 0.13 2.8E-06 48.4 13.6 131 44-184 27-158 (158)
432 PF09486 HrpB7: Bacterial type 96.2 1.1 2.4E-05 42.2 20.1 35 62-96 10-44 (158)
433 PRK15178 Vi polysaccharide exp 96.2 0.28 6.1E-06 53.1 17.9 11 82-92 250-260 (434)
434 PF06548 Kinesin-related: Kine 96.2 1.2 2.7E-05 48.0 22.2 169 64-232 278-470 (488)
435 PF03915 AIP3: Actin interacti 96.2 0.14 3.1E-06 55.2 15.7 15 59-73 150-164 (424)
436 PF13949 ALIX_LYPXL_bnd: ALIX 96.2 1 2.2E-05 45.6 21.3 16 107-122 145-160 (296)
437 cd07665 BAR_SNX1 The Bin/Amphi 96.2 1.6 3.4E-05 43.7 24.8 64 139-202 121-186 (234)
438 KOG2008 BTK-associated SH3-dom 96.2 1.9 4.1E-05 44.6 22.5 13 216-228 217-229 (426)
439 PF07889 DUF1664: Protein of u 96.2 0.1 2.2E-06 47.4 12.1 32 126-157 92-123 (126)
440 PF04108 APG17: Autophagy prot 96.2 1.3 2.7E-05 47.9 22.7 22 213-234 363-384 (412)
441 PF14735 HAUS4: HAUS augmin-li 96.2 1.3 2.9E-05 44.3 21.2 19 48-66 42-60 (238)
442 PF13094 CENP-Q: CENP-Q, a CEN 96.2 0.033 7.1E-07 52.1 9.3 13 108-120 64-76 (160)
443 PF09486 HrpB7: Bacterial type 96.1 1 2.2E-05 42.4 19.0 23 77-99 18-40 (158)
444 KOG4637 Adaptor for phosphoino 96.1 0.38 8.3E-06 50.5 17.6 29 69-97 148-176 (464)
445 cd07598 BAR_FAM92 The Bin/Amph 96.1 1.6 3.4E-05 43.0 23.9 30 52-81 3-32 (211)
446 TIGR00998 8a0101 efflux pump m 96.1 0.15 3.2E-06 52.5 14.9 32 50-81 77-108 (334)
447 COG3264 Small-conductance mech 96.1 0.19 4.1E-06 57.9 16.6 14 204-217 168-181 (835)
448 PF05700 BCAS2: Breast carcino 96.1 0.29 6.3E-06 48.3 16.2 24 128-151 148-171 (221)
449 PF03114 BAR: BAR domain; Int 96.1 0.73 1.6E-05 43.8 18.7 167 51-229 24-191 (229)
450 PF10234 Cluap1: Clusterin-ass 96.1 0.58 1.3E-05 47.6 18.5 80 149-231 174-260 (267)
451 cd07676 F-BAR_FBP17 The F-BAR 96.1 1.1 2.3E-05 45.4 20.5 31 198-228 205-235 (253)
452 PF02841 GBP_C: Guanylate-bind 96.1 2 4.4E-05 44.1 23.2 15 215-229 282-296 (297)
453 PF01540 Lipoprotein_7: Adhesi 96.1 1.9 4.2E-05 43.6 21.8 26 54-79 108-134 (353)
454 PF11802 CENP-K: Centromere-as 96.1 0.55 1.2E-05 47.6 17.9 17 218-234 207-223 (268)
455 cd07598 BAR_FAM92 The Bin/Amph 96.1 1.7 3.6E-05 42.8 23.9 36 50-85 8-43 (211)
456 PF05278 PEARLI-4: Arabidopsis 96.1 0.76 1.7E-05 46.7 19.0 64 172-235 197-260 (269)
457 PRK03598 putative efflux pump 96.0 0.14 3E-06 53.1 14.3 25 205-229 180-204 (331)
458 PF08580 KAR9: Yeast cortical 96.0 0.52 1.1E-05 54.0 19.9 19 207-225 280-298 (683)
459 PF02050 FliJ: Flagellar FliJ 96.0 0.52 1.1E-05 40.4 15.8 110 119-228 1-112 (123)
460 KOG3647 Predicted coiled-coil 96.0 1.3 2.8E-05 44.8 20.1 154 73-229 45-201 (338)
461 COG5074 t-SNARE complex subuni 96.0 1.8 4E-05 43.0 22.2 179 48-228 27-231 (280)
462 PF07058 Myosin_HC-like: Myosi 96.0 0.46 1E-05 48.8 17.2 141 43-184 4-159 (351)
463 PF09744 Jnk-SapK_ap_N: JNK_SA 96.0 0.48 1E-05 44.6 16.4 137 52-191 21-158 (158)
464 PF03904 DUF334: Domain of unk 96.0 0.34 7.5E-06 47.8 15.8 115 112-233 34-150 (230)
465 TIGR00998 8a0101 efflux pump m 96.0 0.47 1E-05 48.8 17.9 125 103-230 77-206 (334)
466 PF11802 CENP-K: Centromere-as 96.0 2.2 4.7E-05 43.4 21.7 189 51-240 14-230 (268)
467 PF10211 Ax_dynein_light: Axon 96.0 1.7 3.6E-05 42.0 20.7 156 53-229 33-189 (189)
468 PF06637 PV-1: PV-1 protein (P 96.0 1.9 4.2E-05 45.6 21.8 183 47-235 59-242 (442)
469 PF15272 BBP1_C: Spindle pole 96.0 1.3 2.8E-05 43.1 19.2 138 74-214 5-150 (196)
470 PF06548 Kinesin-related: Kine 96.0 3.1 6.8E-05 45.0 25.0 182 49-230 298-486 (488)
471 TIGR00293 prefoldin, archaeal 95.9 0.027 5.7E-07 50.4 7.4 94 139-233 1-123 (126)
472 PF04065 Not3: Not1 N-terminal 95.9 0.96 2.1E-05 45.2 19.0 170 51-227 6-207 (233)
473 KOG2273 Membrane coat complex 95.9 3.1 6.7E-05 45.8 25.0 186 48-235 276-470 (503)
474 PF13805 Pil1: Eisosome compon 95.9 1.8 4E-05 44.1 21.1 170 53-228 57-230 (271)
475 cd00632 Prefoldin_beta Prefold 95.9 0.12 2.6E-06 45.0 11.2 104 62-165 1-105 (105)
476 PF10191 COG7: Golgi complex c 95.9 0.61 1.3E-05 54.2 20.2 155 48-208 29-186 (766)
477 PF05335 DUF745: Protein of un 95.9 0.97 2.1E-05 43.8 18.3 126 83-211 62-187 (188)
478 cd07612 BAR_Bin2 The Bin/Amphi 95.9 2 4.4E-05 42.3 23.6 185 49-233 15-209 (211)
479 PTZ00446 vacuolar sorting prot 95.9 1.3 2.8E-05 43.0 19.0 156 48-208 22-190 (191)
480 PRK12705 hypothetical protein; 95.9 1 2.2E-05 50.0 20.4 146 50-204 34-179 (508)
481 KOG3478 Prefoldin subunit 6, K 95.8 0.66 1.4E-05 40.9 15.1 106 120-225 2-112 (120)
482 COG1322 Predicted nuclease of 95.8 1.1 2.5E-05 48.8 20.4 152 43-198 32-187 (448)
483 PF12004 DUF3498: Domain of un 95.8 0.0024 5.1E-08 69.7 0.0 120 47-166 370-494 (495)
484 PRK00409 recombination and DNA 95.8 0.26 5.6E-06 57.3 16.5 116 52-169 501-625 (782)
485 PF01920 Prefoldin_2: Prefoldi 95.8 0.15 3.3E-06 43.6 11.3 83 133-215 1-102 (106)
486 PF15358 TSKS: Testis-specific 95.8 1.5 3.2E-05 46.8 20.2 182 48-229 127-380 (558)
487 PRK12705 hypothetical protein; 95.8 2.6 5.5E-05 46.8 23.2 168 50-226 23-193 (508)
488 cd07656 F-BAR_srGAP The F-BAR 95.8 1 2.2E-05 45.2 18.6 171 70-240 1-206 (241)
489 PF02050 FliJ: Flagellar FliJ 95.8 0.58 1.3E-05 40.0 14.9 107 126-232 1-109 (123)
490 KOG1655 Protein involved in va 95.8 1.6 3.6E-05 42.2 18.8 141 90-230 17-178 (218)
491 KOG4603 TBP-1 interacting prot 95.8 0.28 6.1E-06 46.4 13.4 117 59-194 78-196 (201)
492 cd09234 V_HD-PTP_like Protein- 95.8 2.3 5E-05 44.6 22.0 180 49-228 127-311 (337)
493 cd07686 F-BAR_Fer The F-BAR (F 95.8 1.1 2.4E-05 44.9 18.5 174 54-240 2-181 (234)
494 KOG4787 Uncharacterized conser 95.8 0.55 1.2E-05 51.9 17.4 181 51-231 330-529 (852)
495 KOG2751 Beclin-like protein [S 95.8 0.75 1.6E-05 49.3 18.1 162 68-232 101-268 (447)
496 cd07662 BAR_SNX6 The Bin/Amphi 95.7 2.3 5.1E-05 42.0 24.6 183 49-233 26-214 (218)
497 cd07653 F-BAR_CIP4-like The F- 95.7 2.4 5.2E-05 42.1 23.6 171 51-221 63-248 (251)
498 PF08826 DMPK_coil: DMPK coile 95.7 0.13 2.9E-06 40.8 9.6 60 113-172 1-60 (61)
499 PF03962 Mnd1: Mnd1 family; I 95.7 0.2 4.3E-06 48.4 12.8 105 99-207 62-167 (188)
500 PRK15048 methyl-accepting chem 95.7 4.3 9.2E-05 45.0 25.1 181 53-233 245-440 (553)
No 1
>PRK11637 AmiB activator; Provisional
Probab=99.10 E-value=4.3e-08 Score=105.10 Aligned_cols=74 Identities=12% Similarity=0.184 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH---HHHHHHHHHHHHHHHHHHHH
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS---ERELQMRNLTEKIAKMEAEL 122 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lka---e~E~el~eL~eki~kLEaEL 122 (503)
..++++|+.+..+|+.+..++..+..++..+..+|..+..+|..+...|..++. +.+.++..|+++|..+++++
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l 119 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQ 119 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666655555555555555555555555555443322 23334444444444444433
No 2
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=99.06 E-value=6.6e-08 Score=109.04 Aligned_cols=183 Identities=17% Similarity=0.264 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhhccchH----------HHHHHHHHH
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATH-------GTLRQELAAAQHELQILHGQIGGMKS----------ERELQMRNL 111 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~-------~~LrqeLa~lq~EL~~L~~qL~~lka----------e~E~el~eL 111 (503)
..||.+|+.+..||+......+.|..++ ..++.+|..++.+.+.|+..+..+.. .+|.++++.
T Consensus 421 ~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE 500 (697)
T PF09726_consen 421 SRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888776555444444442 23444555555555555555444332 334444444
Q ss_pred HHHHHHHHHHHHHH--------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 112 TEKIAKMEAELKTA--------------------------EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT 165 (503)
Q Consensus 112 ~eki~kLEaEL~~l--------------------------e~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~ 165 (503)
.++...+|++|.+. +.++....+++.|+++|+.++...+.++..|+.+++.++.
T Consensus 501 ~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 501 RRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455444321 1234445556666666666666666666666666654443
Q ss_pred h----hhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhccc
Q 010712 166 D----VQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEK-------NYITMATEVEKLRAELMNAPN 231 (503)
Q Consensus 166 e----lqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk-------~L~sm~rEIekLraELekle~ 231 (503)
. .+.++.|...|..++.+-.+|+..|..+.+.+.+|-..|-+... .+.+-++||..|+++|+++-+
T Consensus 581 ~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 581 YEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 22456677778888888888888888887766666555444444 444567777777777777644
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.03 E-value=6e-08 Score=114.52 Aligned_cols=46 Identities=17% Similarity=0.217 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010712 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQ 96 (503)
Q Consensus 51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~q 96 (503)
++.++..+..++..++.+..++..++..+++++..+..++..+...
T Consensus 292 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~ 337 (1164)
T TIGR02169 292 VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAE 337 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444333333
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.03 E-value=6.3e-08 Score=114.37 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 195 KKFYNDHLESLQVMEKNYITMATEVEKLRAE 225 (503)
Q Consensus 195 kk~~~el~eqlqemEk~L~sm~rEIekLraE 225 (503)
++.+..+.+++.+++.++..+..++..++.+
T Consensus 454 ~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~ 484 (1164)
T TIGR02169 454 EWKLEQLAADLSKYEQELYDLKEEYDRVEKE 484 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 5
>PRK11637 AmiB activator; Provisional
Probab=99.02 E-value=1.6e-07 Score=100.74 Aligned_cols=77 Identities=16% Similarity=0.224 Sum_probs=53.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH---HHHHHHHHHHHHHHHHHHHHH
Q 010712 47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS---ERELQMRNLTEKIAKMEAELK 123 (503)
Q Consensus 47 ~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lka---e~E~el~eL~eki~kLEaEL~ 123 (503)
....++++|+.+..+|+.+..+...+..++..+..+|..++.+|..++.+|..+.. ..+.+|.++++++..++.++.
T Consensus 48 ~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 48 QLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888887777777777777777777777777777777666665544 444566666666666666554
No 6
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=99.01 E-value=2.1e-07 Score=95.38 Aligned_cols=117 Identities=24% Similarity=0.379 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhhhccch---HHHHHHHHHHHHHHH
Q 010712 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQEL--------AAAQHELQILHGQIGGMK---SERELQMRNLTEKIA 116 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeL--------a~lq~EL~~L~~qL~~lk---ae~E~el~eL~eki~ 116 (503)
...|.++|......|+.|+.+|++|..++..++... .....+|..++..|..+. +..+.++..|...+.
T Consensus 6 L~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~ 85 (312)
T PF00038_consen 6 LQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELE 85 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHH
Confidence 356889999999999999999999999998876651 124455555555554432 233334444444443
Q ss_pred HH----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 117 KM----EAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH 164 (503)
Q Consensus 117 kL----EaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk 164 (503)
.+ +.+......++.+|..++.+++.....+.+|+.+++.|..+|..++
T Consensus 86 ~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 86 DLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 33 3344455677778888888888888888888888888877776443
No 7
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=98.99 E-value=6.3e-07 Score=94.71 Aligned_cols=74 Identities=14% Similarity=0.251 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH---HHHHHHHHHHHHHHHHHHH
Q 010712 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS---ERELQMRNLTEKIAKMEAE 121 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lka---e~E~el~eL~eki~kLEaE 121 (503)
....+++|.....+|..++.++.....+...|+.+|..++.+|..++.+|.+... +.+..|.++...+..|+.+
T Consensus 33 ~~a~~~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 33 AAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 3444455666666666666555555555555555555555555555555544332 3334444455555444443
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.94 E-value=2.2e-07 Score=109.48 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQ 87 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq 87 (503)
..++.++..+..++..+..+...+..++..++.++..++
T Consensus 673 ~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 711 (1179)
T TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELE 711 (1179)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555444444444444444333333
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.93 E-value=2.6e-07 Score=108.91 Aligned_cols=19 Identities=21% Similarity=0.379 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010712 49 EVMEQKIASQHVEMQKLAT 67 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~ 67 (503)
..++.++..+..+++.+..
T Consensus 694 ~~~~~~~~~~~~~l~~l~~ 712 (1179)
T TIGR02168 694 AELEKALAELRKELEELEE 712 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433333
No 10
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=98.92 E-value=3.5e-07 Score=94.47 Aligned_cols=60 Identities=22% Similarity=0.273 Sum_probs=29.1
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010712 36 PGAFPPFDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHG 95 (503)
Q Consensus 36 ~~~~~p~~~~p~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~ 95 (503)
.|.|---++.|++..+..+|.....+....+.|..+...++...++|-+..++++..++.
T Consensus 71 ~gVfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~ 130 (499)
T COG4372 71 SGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQ 130 (499)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456622355556555555555555555555554444444444444444444444443333
No 11
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.88 E-value=5e-07 Score=98.30 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQ 81 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~Lrq 81 (503)
+..|.++|....++|++|+.+|.+|..++..|+.
T Consensus 44 l~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~ 77 (546)
T KOG0977|consen 44 LQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRG 77 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678888888999999999999999999988876
No 12
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.87 E-value=7.8e-07 Score=96.85 Aligned_cols=53 Identities=21% Similarity=0.363 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccch
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMK 101 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lk 101 (503)
..|+.+|+....|...|...+..|+.+...|+.++..++.+|...+....+++
T Consensus 139 ~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~ 191 (546)
T PF07888_consen 139 QLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLK 191 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777778877788887777777777777777776666655443
No 13
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.87 E-value=9.3e-07 Score=96.27 Aligned_cols=51 Identities=22% Similarity=0.220 Sum_probs=31.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712 47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI 97 (503)
Q Consensus 47 ~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL 97 (503)
.++.++++.+.+..+...|+.++..|..++..|+.+|...+.+...|..+.
T Consensus 144 qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~ 194 (546)
T PF07888_consen 144 QLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQ 194 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666666666666666555555554443
No 14
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.87 E-value=6.1e-07 Score=98.71 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=8.8
Q ss_pred CCCCCCCCCCCCCCCCC
Q 010712 26 PFVSGMRPPMPGAFPPF 42 (503)
Q Consensus 26 ~~~~~~~p~~~~~~~p~ 42 (503)
.|-..+.+| .|.|.||
T Consensus 129 ~f~~~v~l~-q~~f~~f 144 (562)
T PHA02562 129 SFKQIVVLG-TAGYVPF 144 (562)
T ss_pred HHhHHheec-cCchhhH
Confidence 344433344 7788776
No 15
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.86 E-value=5.3e-07 Score=103.30 Aligned_cols=61 Identities=18% Similarity=0.181 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010712 172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNV 232 (503)
Q Consensus 172 ~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~e 232 (503)
++..+++.|.+|+++++..+..++.+..++.+.+.+.++++...+.+|..|+..++....+
T Consensus 398 e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~ 458 (1074)
T KOG0250|consen 398 ERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEE 458 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555666666666666655555555555555544433
No 16
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.85 E-value=4.7e-07 Score=102.11 Aligned_cols=113 Identities=20% Similarity=0.278 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH---HHHHHHHHHHHHHHHHHHHHH--
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS---ERELQMRNLTEKIAKMEAELK-- 123 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lka---e~E~el~eL~eki~kLEaEL~-- 123 (503)
..++++|+++..++|+++.+...+..++..|++++..++.+...++..+..... .+...+..+.++...+++|+.
T Consensus 695 ~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~se 774 (1200)
T KOG0964|consen 695 EDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESELGSE 774 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhHH
Confidence 345667777777777777777777778888888888887777777776654322 334445555555555555443
Q ss_pred -----------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 124 -----------TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ 161 (503)
Q Consensus 124 -----------~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELq 161 (503)
++.+|..||..+..++..+..++.+++..+..|+..|.
T Consensus 775 l~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~ 823 (1200)
T KOG0964|consen 775 LFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANLN 823 (1200)
T ss_pred HHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888999999888888888888888877774
No 17
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.83 E-value=6.6e-07 Score=98.43 Aligned_cols=18 Identities=11% Similarity=0.226 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010712 210 KNYITMATEVEKLRAELM 227 (503)
Q Consensus 210 k~L~sm~rEIekLraELe 227 (503)
.++..+..+++++..+++
T Consensus 379 ~~l~~l~~~l~~~~~~~~ 396 (562)
T PHA02562 379 EELAKLQDELDKIVKTKS 396 (562)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 18
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=98.79 E-value=1.9e-06 Score=91.22 Aligned_cols=116 Identities=16% Similarity=0.152 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 010712 128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE----LESLRQEYHHCRGTYEYEKKFYNDHLE 203 (503)
Q Consensus 128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~E----Ie~L~qELq~lR~ele~ekk~~~el~e 203 (503)
+...++.+...+..|...++.+..+..+|+..+.....+.+++..+..| +..|..++..-++.++.++.....+..
T Consensus 159 ~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~ 238 (420)
T COG4942 159 RAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKN 238 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3344555666666666666666666666665555444444444433333 333334444444444555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-ccccccccCCCCCCC
Q 010712 204 SLQVMEKNYITMATEVEKLRAELMN-APNVDRRADGSYGGA 243 (503)
Q Consensus 204 qlqemEk~L~sm~rEIekLraELek-le~el~~~~~~y~~~ 243 (503)
.+..++.+..+...+-+.-+++.+. ...+.++.+..|.+.
T Consensus 239 ~Ias~e~~aA~~re~~aa~~aa~~~~~~~e~~r~~~~~~~~ 279 (420)
T COG4942 239 EIASAEAAAAKAREAAAAAEAAAARARAAEAKRTGETYKPT 279 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcCCC
Confidence 5555554433322222222222111 233344556677663
No 19
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.77 E-value=8.8e-07 Score=88.00 Aligned_cols=97 Identities=11% Similarity=0.211 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 010712 133 QKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI-----------PALLSELESLRQEYHHCRGTYEYEKKFYNDH 201 (503)
Q Consensus 133 eqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi-----------~~l~~EIe~L~qELq~lR~ele~ekk~~~el 201 (503)
..+..+|..+......++.++..|..+|..+...++.+ ..+...|..|...|..+....+.....+..+
T Consensus 123 ~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~L 202 (237)
T PF00261_consen 123 KVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKL 202 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444333332221 2223334444444444444444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712 202 LESLQVMEKNYITMATEVEKLRAELMNA 229 (503)
Q Consensus 202 ~eqlqemEk~L~sm~rEIekLraELekl 229 (503)
..++..++..|.....+...++.+|+.+
T Consensus 203 e~~id~le~eL~~~k~~~~~~~~eld~~ 230 (237)
T PF00261_consen 203 EKEIDRLEDELEKEKEKYKKVQEELDQT 230 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555444
No 20
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.77 E-value=9.3e-07 Score=101.53 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 55 IASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQ 91 (503)
Q Consensus 55 Ie~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~ 91 (503)
+..+..+.+.++.+..++++.+..+.+++..+..+|+
T Consensus 386 ~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~e 422 (1293)
T KOG0996|consen 386 FESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIE 422 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444443333333333333333333333333
No 21
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.76 E-value=3.9e-06 Score=83.38 Aligned_cols=185 Identities=17% Similarity=0.217 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH---HHHHHHHHHHHHHHHHHHHHH--
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS---ERELQMRNLTEKIAKMEAELK-- 123 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lka---e~E~el~eL~eki~kLEaEL~-- 123 (503)
..|+++|.....++..+..++.........+..++..++.+|..|...+..... ....++..+....+..+..++
T Consensus 4 ~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~l 83 (237)
T PF00261_consen 4 QQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVL 83 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666665555566666666666666666655543221 223333333333222222221
Q ss_pred ---------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHhh
Q 010712 124 ---------TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ----QIPALLSELESLRQEYHHCRGT 190 (503)
Q Consensus 124 ---------~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elq----qi~~l~~EIe~L~qELq~lR~e 190 (503)
+++.|..+|..++..+..+.....++..++..+..+|.++...+. ++..+..+|..+...|..++..
T Consensus 84 E~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~ 163 (237)
T PF00261_consen 84 ENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEAS 163 (237)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhh
Confidence 234455555555555555555555555556566666554443322 2333444444444333333322
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712 191 -------YEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 191 -------le~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el 233 (503)
.+.....+..+..++++.+......++.+.+|..+|+.++.+|
T Consensus 164 ~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL 213 (237)
T PF00261_consen 164 EEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDEL 213 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223334444555555555555555555555555555555544
No 22
>PRK02224 chromosome segregation protein; Provisional
Probab=98.76 E-value=1.3e-06 Score=101.41 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHhccc
Q 010712 214 TMATEVEKLRAELMNAPN 231 (503)
Q Consensus 214 sm~rEIekLraELekle~ 231 (503)
.+..+++.++.++..++.
T Consensus 416 ~l~~~~~~l~~~~~~~~~ 433 (880)
T PRK02224 416 ELREERDELREREAELEA 433 (880)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444433333333
No 23
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.76 E-value=1.7e-06 Score=103.41 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010712 51 MEQKIASQHVEMQKLATENQRL 72 (503)
Q Consensus 51 LEqeIe~~~~EIq~Le~enqrL 72 (503)
++++|..+..++..+..+...+
T Consensus 265 ~~~~i~~~~~~~~e~~~~~~~~ 286 (1163)
T COG1196 265 AEKEIEELKSELEELREELEEL 286 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 24
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.76 E-value=1.1e-06 Score=99.43 Aligned_cols=136 Identities=18% Similarity=0.210 Sum_probs=73.5
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHH-----------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 97 IGGMKSERELQMRNLTEKIAKMEAELKT-----------AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT 165 (503)
Q Consensus 97 L~~lkae~E~el~eL~eki~kLEaEL~~-----------le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~ 165 (503)
+....++.+.++++|...|+.++..+++ .+.|..|+++++.+++.......+++.++..|..++..+..
T Consensus 778 ~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~ 857 (1174)
T KOG0933|consen 778 MKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEA 857 (1174)
T ss_pred HhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445556666666666555444331 23455555566666665555556666666666555554443
Q ss_pred hhhhh----HHHHHHHHHHH-------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010712 166 DVQQI----PALLSELESLR-------QEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNV 232 (503)
Q Consensus 166 elqqi----~~l~~EIe~L~-------qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~e 232 (503)
.+..+ ..+.++|...+ .++..+-.+.+.+..++...+..+++++.++..|.+|-..++.+++++.+.
T Consensus 858 kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k 935 (1174)
T KOG0933|consen 858 KVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKK 935 (1174)
T ss_pred HHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHh
Confidence 33221 11222222222 233333344445555555555667777777777777777777777777665
No 25
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.73 E-value=2.4e-06 Score=98.10 Aligned_cols=64 Identities=17% Similarity=0.271 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010712 169 QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNV 232 (503)
Q Consensus 169 qi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~e 232 (503)
++..|..|++.++..+..|+.+++.++..+....+++...+..+..+.+.|+....+|..+++.
T Consensus 402 k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~ 465 (1074)
T KOG0250|consen 402 KLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKT 465 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4667788888888888888888888888888888877778888888888888888888777654
No 26
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.73 E-value=3e-06 Score=101.40 Aligned_cols=52 Identities=27% Similarity=0.313 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 176 ELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 227 (503)
Q Consensus 176 EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELe 227 (503)
+++.++.++..+..++...+....++.+++.+++.++..+..++++++..+.
T Consensus 864 ~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 915 (1163)
T COG1196 864 ELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLE 915 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444445555555555555544444444444
No 27
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=98.72 E-value=9.3e-06 Score=77.50 Aligned_cols=59 Identities=12% Similarity=0.123 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 010712 176 ELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDR 234 (503)
Q Consensus 176 EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~ 234 (503)
+...|+..+-..+.-+-.-...+.+...++.++..-++....-++.|+.|+.+|+..+.
T Consensus 131 ~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~ 189 (193)
T PF14662_consen 131 EKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLS 189 (193)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444344444555666666777777777666667777777777766553
No 28
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.72 E-value=1.6e-06 Score=104.78 Aligned_cols=57 Identities=23% Similarity=0.330 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 106 LQMRNLTEKIAKMEAELK------TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR 162 (503)
Q Consensus 106 ~el~eL~eki~kLEaEL~------~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqr 162 (503)
.++..|+.+|..++.++. .++.+..++..++.++..+..++..+..+++.++.+|.+
T Consensus 799 ~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~ 861 (1311)
T TIGR00606 799 MELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQH 861 (1311)
T ss_pred HHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445554444333 123455555555555555444433334443333333333
No 29
>PRK03918 chromosome segregation protein; Provisional
Probab=98.72 E-value=3.7e-06 Score=97.43 Aligned_cols=31 Identities=13% Similarity=0.253 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGTL 79 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~L 79 (503)
..++++|+.+..++..|..+...+..++..+
T Consensus 455 ~~~~~ei~~l~~~~~~l~~~~~~l~~~~~~~ 485 (880)
T PRK03918 455 EEYTAELKRIEKELKEIEEKERKLRKELREL 485 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666665555555444
No 30
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.71 E-value=2.6e-06 Score=103.81 Aligned_cols=40 Identities=8% Similarity=0.087 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 176 ELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITM 215 (503)
Q Consensus 176 EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm 215 (503)
+|.+|...+..+..+++.++.....+++++.++..+++.+
T Consensus 1098 ~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l 1137 (1930)
T KOG0161|consen 1098 QIKELEARIKELEEELEAERASRAKAERQRRDLSEELEEL 1137 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443333333
No 31
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.71 E-value=2.2e-06 Score=98.57 Aligned_cols=48 Identities=21% Similarity=0.269 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 010712 52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG 99 (503)
Q Consensus 52 EqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~ 99 (503)
++.+..+...|.+|+.++++...++.+++...+..+.+++.++.+|.+
T Consensus 404 ~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~ 451 (1293)
T KOG0996|consen 404 EEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQ 451 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHH
Confidence 344444444444444444444444444333333333344444444333
No 32
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.70 E-value=5.7e-06 Score=93.96 Aligned_cols=190 Identities=18% Similarity=0.224 Sum_probs=94.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhccchH---------------HHHHH
Q 010712 46 PPPEVMEQKIASQHVEMQKLATENQRLAA---THGTLRQELAAAQHELQILHGQIGGMKS---------------ERELQ 107 (503)
Q Consensus 46 p~p~~LEqeIe~~~~EIq~Le~enqrLa~---e~~~LrqeLa~lq~EL~~L~~qL~~lka---------------e~E~e 107 (503)
.....++.+|+..+.|+..|+.+++.|+. .+..|+++|+...+++..+...+++... +.+.+
T Consensus 677 ~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~ 756 (1174)
T KOG0933|consen 677 QKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQ 756 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHH
Confidence 33456777777777777777777666544 4566777888777777777666654211 11111
Q ss_pred HH-------HHHHHHHHHHHHHH--------HHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 010712 108 MR-------NLTEKIAKMEAELK--------TAEPVKLEFQKSKTEAQNLV-------VAREELIAKVHQLTQDLQRAHT 165 (503)
Q Consensus 108 l~-------eL~eki~kLEaEL~--------~le~Lk~ELeqLraELqqL~-------~erqeLe~qiq~L~~ELqrlk~ 165 (503)
|. ...+++..+|..+. ++..|.++|+.++..+++.. .+.+.|+.++++|+.++...++
T Consensus 757 Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~ 836 (1174)
T KOG0933|consen 757 IKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQ 836 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 12222222222221 13334444444444433333 3333334444444444433333
Q ss_pred hhh----hhHHHHHHHHHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 010712 166 DVQ----QIPALLSELESLRQEYHHCRGTYEYEKKFY-------NDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDR 234 (503)
Q Consensus 166 elq----qi~~l~~EIe~L~qELq~lR~ele~ekk~~-------~el~eqlqemEk~L~sm~rEIekLraELekle~el~ 234 (503)
.+. ++..++.++.+|+..+..+..+.+...+.+ .++..++..+....+.+.+|+..+.-++.++++++.
T Consensus 837 ~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~ 916 (1174)
T KOG0933|consen 837 QLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVT 916 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHH
Confidence 322 233444444444444444333333333333 333334444444445666677777777778887775
Q ss_pred c
Q 010712 235 R 235 (503)
Q Consensus 235 ~ 235 (503)
.
T Consensus 917 ~ 917 (1174)
T KOG0933|consen 917 K 917 (1174)
T ss_pred H
Confidence 4
No 33
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.70 E-value=3.4e-06 Score=91.98 Aligned_cols=115 Identities=22% Similarity=0.329 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhcc---chHHHHHHHHHHHHHHHHHH
Q 010712 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQIL-------HGQIGG---MKSERELQMRNLTEKIAKME 119 (503)
Q Consensus 50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L-------~~qL~~---lkae~E~el~eL~eki~kLE 119 (503)
..|.+|..+..-|.....+..+++.++..|+.+++.++..+... +..+.. ...+++.++.-++.+++.|+
T Consensus 89 ~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le 168 (546)
T KOG0977|consen 89 KYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALE 168 (546)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence 44555555555555554445555555555555555444444444 333321 22356667777777788888
Q ss_pred HHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 120 AELKTA----EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH 164 (503)
Q Consensus 120 aEL~~l----e~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk 164 (503)
.++..+ ..|..+|..+++++++-...+.+++.+++.|.++|..++
T Consensus 169 ~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 169 DELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 777654 467788888888888888889999999999999997655
No 34
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.70 E-value=3.8e-06 Score=83.25 Aligned_cols=111 Identities=16% Similarity=0.227 Sum_probs=54.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAE 126 (503)
Q Consensus 47 ~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le 126 (503)
.++.|+.++..+..++......+.++..++..++..+.+++.++..++.++.. .+.+++++.++++..+..+.. .
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~----~e~ei~~~r~r~~~~e~kl~~-v 85 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQ----LESEIQEIRERIKRAEEKLSA-V 85 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhc-c
Confidence 34455555555555555555555555555555555555555555555555433 233455555555555554421 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR 162 (503)
Q Consensus 127 ~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqr 162 (503)
+-..++..|..+++.+......|+.++..|..++.+
T Consensus 86 ~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~ 121 (239)
T COG1579 86 KDERELRALNIEIQIAKERINSLEDELAELMEEIEK 121 (239)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112234444444444444444444444444444433
No 35
>PRK02224 chromosome segregation protein; Provisional
Probab=98.69 E-value=4.4e-06 Score=97.01 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=25.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712 187 CRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229 (503)
Q Consensus 187 lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekl 229 (503)
++.+++.+.+.+..+...+..++..+..+..+|..++..++.+
T Consensus 651 l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~~e~~ 693 (880)
T PRK02224 651 AREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEEL 693 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555566666666666666666666666554
No 36
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.69 E-value=4.4e-06 Score=94.49 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 56 ASQHVEMQKLATENQRLAATHGTLRQELA 84 (503)
Q Consensus 56 e~~~~EIq~Le~enqrLa~e~~~LrqeLa 84 (503)
..++.||++|..|++.....-++|+.+|.
T Consensus 421 ~rLE~dvkkLraeLq~~Rq~E~ELRsqis 449 (697)
T PF09726_consen 421 SRLEADVKKLRAELQSSRQSEQELRSQIS 449 (697)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 34444444444444444444444444444
No 37
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.64 E-value=6.7e-06 Score=99.53 Aligned_cols=187 Identities=11% Similarity=0.183 Sum_probs=89.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc------chHHHHHHHHHHHHHHHHHHH
Q 010712 47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG------MKSERELQMRNLTEKIAKMEA 120 (503)
Q Consensus 47 ~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~------lkae~E~el~eL~eki~kLEa 120 (503)
.+..|+.+|..+..++..|..++..+..+...++.+|..++..+..+.....+ .+.+++.++.+|.+.+..+..
T Consensus 823 s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~ 902 (1311)
T TIGR00606 823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIR 902 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777776666666666666666655554433333332222 223444455555555555444
Q ss_pred HHHH----HhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH---HHHhhh----------------hhHHH
Q 010712 121 ELKT----AEPVKLEFQKSKTEAQNLVVAR----EELIAKVHQLTQDLQR---AHTDVQ----------------QIPAL 173 (503)
Q Consensus 121 EL~~----le~Lk~ELeqLraELqqL~~er----qeLe~qiq~L~~ELqr---lk~elq----------------qi~~l 173 (503)
++.. +..+..++..++.++.++.... .++..+++.+...+.. +..+++ ++..+
T Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e~el~~~ 982 (1311)
T TIGR00606 903 EIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTV 982 (1311)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4432 2223333333333332222211 1111122222211111 111111 11222
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhccccc
Q 010712 174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITM--ATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 174 ~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm--~rEIekLraELekle~el 233 (503)
...|+.++.+++.+..+++.+++.+..+......+..+|..+ ..++..++.+|..|+.+.
T Consensus 983 ~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~ 1044 (1311)
T TIGR00606 983 NAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEM 1044 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555556666666666666666666666666666666655 666666666666665443
No 38
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.64 E-value=1.3e-05 Score=88.35 Aligned_cols=104 Identities=21% Similarity=0.277 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------------------hHHHHHHHHHHHHHHHHH
Q 010712 126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQ------------------IPALLSELESLRQEYHHC 187 (503)
Q Consensus 126 e~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqq------------------i~~l~~EIe~L~qELq~l 187 (503)
+.|+.||...+.++..++.........+..|..+|.+++.+++- |..+..|.+..+.+...+
T Consensus 312 esL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~ 391 (522)
T PF05701_consen 312 ESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEA 391 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666665555555566666666555554431 122233333444444444
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712 188 RGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229 (503)
Q Consensus 188 R~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekl 229 (503)
+.++..++..++..+..+.+++..|....++++..++--+..
T Consensus 392 ~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~A 433 (522)
T PF05701_consen 392 KEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALA 433 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555666666666666666666655544433
No 39
>PRK03918 chromosome segregation protein; Provisional
Probab=98.64 E-value=7.9e-06 Score=94.70 Aligned_cols=31 Identities=32% Similarity=0.456 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 010712 109 RNLTEKIAKMEAELKTAEPVKLEFQKSKTEA 139 (503)
Q Consensus 109 ~eL~eki~kLEaEL~~le~Lk~ELeqLraEL 139 (503)
..|.+++..++.++..++.++.+++.++.++
T Consensus 217 ~~l~~~~~~~~~~l~~l~~~~~~~~~l~~~~ 247 (880)
T PRK03918 217 PELREELEKLEKEVKELEELKEEIEELEKEL 247 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 40
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.64 E-value=1e-05 Score=90.93 Aligned_cols=47 Identities=9% Similarity=0.110 Sum_probs=25.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712 187 CRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 187 lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el 233 (503)
||.+|+.++-.+.++..++.+..+.+-...+-|.|.+.-+.+|+..+
T Consensus 495 LreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdql 541 (1243)
T KOG0971|consen 495 LREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQL 541 (1243)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44445544444444444544444444455666666666666665544
No 41
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.63 E-value=3.2e-05 Score=79.29 Aligned_cols=39 Identities=23% Similarity=0.409 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQ 87 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq 87 (503)
..++.+|..+...|..+..++.+|..++..++.++..++
T Consensus 50 ~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r 88 (312)
T PF00038_consen 50 EMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLR 88 (312)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHH
Confidence 456666666666666666666666555555555544443
No 42
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.60 E-value=3.4e-05 Score=78.33 Aligned_cols=86 Identities=17% Similarity=0.277 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 010712 130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ----QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESL 205 (503)
Q Consensus 130 ~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elq----qi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eql 205 (503)
.++..+.+++..+..++.++..+|+.|..+++....++- .+..++.+++.++.++..+...++.+...+..+...+
T Consensus 158 ~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~el 237 (294)
T COG1340 158 EKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNEL 237 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344555556666666666666666666666655444432 3455566666666666666666666666665555555
Q ss_pred HHHHHHHHHH
Q 010712 206 QVMEKNYITM 215 (503)
Q Consensus 206 qemEk~L~sm 215 (503)
.++++.+..+
T Consensus 238 re~~k~ik~l 247 (294)
T COG1340 238 RELEKKIKAL 247 (294)
T ss_pred HHHHHHHHHH
Confidence 5555555433
No 43
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=98.60 E-value=2.8e-05 Score=80.70 Aligned_cols=183 Identities=14% Similarity=0.204 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH---HHHHHHHHHHHHHHHHHHHHHHH
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS---ERELQMRNLTEKIAKMEAELKTA 125 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lka---e~E~el~eL~eki~kLEaEL~~l 125 (503)
+++...|..+..|+.....+....+.+.+..++||....+|-+..+.++..++. ..+.++..|.++...+..++..+
T Consensus 77 ddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l 156 (499)
T COG4372 77 DDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTL 156 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666666666666666666667777777777776666666666554332 33344444555555555444432
Q ss_pred h----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhhhHHHHHHHHHHHHHHHHHHh-----
Q 010712 126 E----PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTD-------VQQIPALLSELESLRQEYHHCRG----- 189 (503)
Q Consensus 126 e----~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~e-------lqqi~~l~~EIe~L~qELq~lR~----- 189 (503)
. .|.++++.|..+-++|+....+|..++.+|..+-.++.++ .+.+.....|+..+...++...+
T Consensus 157 ~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qr 236 (499)
T COG4372 157 AEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQR 236 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1222222222222222222222222222222222222211 12223333333333333333333
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712 190 --TYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (503)
Q Consensus 190 --ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~ 231 (503)
.|......+..-.+++.+-|..++.++.+..-|+.|++.+++
T Consensus 237 d~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~ 280 (499)
T COG4372 237 DAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEA 280 (499)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344455666666666666666666666666554
No 44
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.55 E-value=1.8e-05 Score=95.96 Aligned_cols=37 Identities=5% Similarity=0.121 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712 195 KKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (503)
Q Consensus 195 kk~~~el~eqlqemEk~L~sm~rEIekLraELekle~ 231 (503)
+..+....+++++++.++..+++++.+++.+++.+++
T Consensus 441 e~~LenF~aklee~e~qL~elE~kL~~lea~leql~~ 477 (1486)
T PRK04863 441 EDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQ 477 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444433
No 45
>PRK09039 hypothetical protein; Validated
Probab=98.54 E-value=7.5e-06 Score=85.70 Aligned_cols=57 Identities=12% Similarity=0.239 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 010712 170 IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITM----ATEVEKLRAEL 226 (503)
Q Consensus 170 i~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm----~rEIekLraEL 226 (503)
|..|+.||+.|+.+|..++.+|+..++...+...++.+++.+|+.+ .+++++++.++
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4445555555555565555555555555555555666665555543 34555555555
No 46
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.54 E-value=3.1e-05 Score=85.34 Aligned_cols=108 Identities=21% Similarity=0.274 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 010712 126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIP----ALLSELESLRQEYHHCRGTYEYEKKFYNDH 201 (503)
Q Consensus 126 e~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~----~l~~EIe~L~qELq~lR~ele~ekk~~~el 201 (503)
..++.||+.++.+|+.+..+...|...+..|..+|.+.+.++.++. .....|..|..+|..++.+|+.++......
T Consensus 284 ~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~ 363 (522)
T PF05701_consen 284 ASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKA 363 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcch
Confidence 3444555555555555555555555555556666655555544432 223345666666666666666655555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712 202 LESLQVMEKNYITMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 202 ~eqlqemEk~L~sm~rEIekLraELekle~el 233 (503)
.....+|...|+.+..|.+..+.++...+.++
T Consensus 364 k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~ 395 (522)
T PF05701_consen 364 KEAMSELPKALQQLSSEAEEAKKEAEEAKEEV 395 (522)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666666666665555544
No 47
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=1.6e-05 Score=88.12 Aligned_cols=10 Identities=20% Similarity=0.388 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 010712 109 RNLTEKIAKM 118 (503)
Q Consensus 109 ~eL~eki~kL 118 (503)
+.|..++..|
T Consensus 447 etLn~k~qql 456 (1118)
T KOG1029|consen 447 ETLNFKLQQL 456 (1118)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 48
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=98.53 E-value=4.5e-05 Score=72.92 Aligned_cols=42 Identities=29% Similarity=0.298 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010712 55 IASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQ 96 (503)
Q Consensus 55 Ie~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~q 96 (503)
|+.++.--++|..++.+|...++.+.+.-+.+..++..|+.+
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q 51 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQ 51 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444433333333333333333
No 49
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.51 E-value=3e-05 Score=94.12 Aligned_cols=40 Identities=10% Similarity=0.000 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 189 GTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (503)
Q Consensus 189 ~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELek 228 (503)
..++.......+...++.++++++..++.+++.++.++..
T Consensus 442 ~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~ 481 (1486)
T PRK04863 442 DWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQL 481 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555555555555555555444443
No 50
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.51 E-value=1.5e-05 Score=86.41 Aligned_cols=100 Identities=11% Similarity=0.097 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 010712 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQ 206 (503)
Q Consensus 127 ~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlq 206 (503)
.+...|..++.|+.....+++.|..+++.|...|+...--.+++..+..|..+|.+++.++..+++.+.+.+-+++.+++
T Consensus 291 ~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~ 370 (581)
T KOG0995|consen 291 HMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIE 370 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34455556666666666666666666666666554433233445666777777777777777777777777766666655
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010712 207 VMEKNYITMATEVEKLRAEL 226 (503)
Q Consensus 207 emEk~L~sm~rEIekLraEL 226 (503)
+.-++++++..++.++..+|
T Consensus 371 ~~f~~le~~~~~~~~l~~~i 390 (581)
T KOG0995|consen 371 DFFKELEKKFIDLNSLIRRI 390 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555554444
No 51
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.50 E-value=3.4e-05 Score=87.12 Aligned_cols=47 Identities=26% Similarity=0.367 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI 97 (503)
Q Consensus 51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL 97 (503)
+.++++.+..++..+..+.+.+..++..++.+++.++.+++.++..+
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~ 253 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKF 253 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555554443
No 52
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.50 E-value=2.7e-05 Score=89.29 Aligned_cols=55 Identities=22% Similarity=0.206 Sum_probs=37.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 010712 181 RQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRR 235 (503)
Q Consensus 181 ~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~~ 235 (503)
++..+.|+.+.+++-....+..+.|++|+-.+..-++.|+.+.++|..|++++.+
T Consensus 1688 r~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~ 1742 (1758)
T KOG0994|consen 1688 RERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVES 1742 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Confidence 3445555555555555555666677777777777777788888888888877653
No 53
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.48 E-value=3.6e-05 Score=85.65 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH
Q 010712 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEK 114 (503)
Q Consensus 51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~ek 114 (503)
+|+.+..+..+|..|.....+|+.+...|+.-++.++.++...+.+|+.+.+..+..+++|.++
T Consensus 97 lEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk 160 (1265)
T KOG0976|consen 97 LEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAK 160 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 4444444444455555444555555555544455555555544444444444444444444443
No 54
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.47 E-value=5e-05 Score=82.48 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 50 VMEQKIASQHVEMQKLATENQRLAATHGTL 79 (503)
Q Consensus 50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~L 79 (503)
.|++..+....+|..|+..++.|.+.+.++
T Consensus 225 ~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ 254 (581)
T KOG0995|consen 225 RLEKYFTSIANEIEDLKKTNRELEEMINER 254 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666777888888888877766543
No 55
>PRK09039 hypothetical protein; Validated
Probab=98.47 E-value=3e-05 Score=81.23 Aligned_cols=49 Identities=16% Similarity=0.237 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010712 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG 98 (503)
Q Consensus 50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~ 98 (503)
.|.++|+....||..|..+...|.+.+.--+.....++.+|..++.++.
T Consensus 43 fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~ 91 (343)
T PRK09039 43 FLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLS 91 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3566777777777766666666555444444455555555555555554
No 56
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=1.4e-05 Score=88.63 Aligned_cols=30 Identities=17% Similarity=0.295 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 131 EFQKSKTEAQNLVVAREELIAKVHQLTQDL 160 (503)
Q Consensus 131 ELeqLraELqqL~~erqeLe~qiq~L~~EL 160 (503)
|+.+|+++|+++++.++.|.-+.+.|..+|
T Consensus 487 ei~qlqarikE~q~kl~~l~~Ekq~l~~ql 516 (1118)
T KOG1029|consen 487 EIDQLQARIKELQEKLQKLAPEKQELNHQL 516 (1118)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 344444444444444444444444444333
No 57
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=98.46 E-value=0.00012 Score=72.57 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010712 102 SERELQMRNLTEKIAKMEAEL 122 (503)
Q Consensus 102 ae~E~el~eL~eki~kLEaEL 122 (503)
+.+|+++.++..+|..|++..
T Consensus 139 A~kEQEmqe~~sqi~~lK~qq 159 (330)
T KOG2991|consen 139 ATKEQEMQECTSQIQYLKQQQ 159 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 466777888888888777654
No 58
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=98.45 E-value=3.7e-05 Score=85.66 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010712 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG 98 (503)
Q Consensus 51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~ 98 (503)
.+.+......|++.|..+++.|..+++.+..+++.++.++..+..++.
T Consensus 319 ~~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~ 366 (594)
T PF05667_consen 319 EEDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELE 366 (594)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555555554444443
No 59
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.44 E-value=4.4e-05 Score=85.96 Aligned_cols=17 Identities=12% Similarity=0.182 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhccc
Q 010712 215 MATEVEKLRAELMNAPN 231 (503)
Q Consensus 215 m~rEIekLraELekle~ 231 (503)
|+..|..|+.+|..++.
T Consensus 460 lEekVklLeetv~dlEa 476 (1243)
T KOG0971|consen 460 LEEKVKLLEETVGDLEA 476 (1243)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556666666666543
No 60
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=98.44 E-value=1.3e-05 Score=83.17 Aligned_cols=60 Identities=18% Similarity=0.273 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 107 QMRNLTEKIAKMEAELKTAEPVKLEFQKS-KTEAQNLVVAREELIAKVHQLTQDLQRAHTD 166 (503)
Q Consensus 107 el~eL~eki~kLEaEL~~le~Lk~ELeqL-raELqqL~~erqeLe~qiq~L~~ELqrlk~e 166 (503)
.+..|.++...|+.++..++.+..++... +.+|..++.++.++..++..++.+|..++.+
T Consensus 178 ~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~e 238 (325)
T PF08317_consen 178 LLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEE 238 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443322 2334444444444444444444444444433
No 61
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=98.44 E-value=9.4e-05 Score=76.88 Aligned_cols=39 Identities=13% Similarity=0.208 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT 165 (503)
Q Consensus 127 ~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~ 165 (503)
.|+.+...|.+.++.+...+.++....+.|+.++.+++.
T Consensus 160 ~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~ 198 (325)
T PF08317_consen 160 LLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQ 198 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555555555544443
No 62
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=98.43 E-value=6.9e-05 Score=81.15 Aligned_cols=31 Identities=10% Similarity=0.115 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 48 PEVMEQKIASQHVEMQKLATENQRLAATHGT 78 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~ 78 (503)
+..++.++..+..++..|+.+..+|.+++..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~rL~a~~~~ 122 (457)
T TIGR01000 92 NGNEENQKQLLEQQLDNLKDQKKSLDTLKQS 122 (457)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777665544
No 63
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=98.43 E-value=0.00013 Score=70.57 Aligned_cols=31 Identities=10% Similarity=0.198 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010712 202 LESLQVMEKNYITMATEVEKLRAELMNAPNV 232 (503)
Q Consensus 202 ~eqlqemEk~L~sm~rEIekLraELekle~e 232 (503)
.....++..++..+..||+.|...|...+++
T Consensus 163 ~kK~~~~~~~~~~l~~ei~~L~~klkEKer~ 193 (194)
T PF15619_consen 163 KKKHKEAQEEVKSLQEEIQRLNQKLKEKERE 193 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344555556666666666666666655443
No 64
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.43 E-value=4.1e-05 Score=86.97 Aligned_cols=98 Identities=10% Similarity=0.144 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 139 AQNLVVAREELIAKVHQLTQDLQRAHTDV----QQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYIT 214 (503)
Q Consensus 139 LqqL~~erqeLe~qiq~L~~ELqrlk~el----qqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~s 214 (503)
+.++...+.+...+.+.|..+|..++.++ +++..+...|.+++.++..+-.++-.++..++++....++++.+-..
T Consensus 399 i~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~ 478 (1200)
T KOG0964|consen 399 IEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKK 478 (1200)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444443333332 23444555556666666666666667777778888888888888888
Q ss_pred HHHHHHHHHHHHHhcccccccc
Q 010712 215 MATEVEKLRAELMNAPNVDRRA 236 (503)
Q Consensus 215 m~rEIekLraELekle~el~~~ 236 (503)
+...|+.++.+|...++.|..+
T Consensus 479 l~~~i~~~~~dl~~~~~~L~~~ 500 (1200)
T KOG0964|consen 479 LRSLIANLEEDLSRAEKNLRAT 500 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888888888887654
No 65
>PRK01156 chromosome segregation protein; Provisional
Probab=98.42 E-value=6.3e-05 Score=87.75 Aligned_cols=11 Identities=9% Similarity=0.084 Sum_probs=4.3
Q ss_pred HHHHHhccccc
Q 010712 223 RAELMNAPNVD 233 (503)
Q Consensus 223 raELekle~el 233 (503)
..+++++.+++
T Consensus 415 ~~~~~~l~~~i 425 (895)
T PRK01156 415 NVKLQDISSKV 425 (895)
T ss_pred HHHHHHHHHHH
Confidence 33344444333
No 66
>PRK01156 chromosome segregation protein; Provisional
Probab=98.41 E-value=7.5e-05 Score=87.10 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 010712 206 QVMEKNYITMATEVEKLRAELMN 228 (503)
Q Consensus 206 qemEk~L~sm~rEIekLraELek 228 (503)
.++.+++..+..++..++..+..
T Consensus 419 ~~l~~~i~~l~~~i~~l~~~~~e 441 (895)
T PRK01156 419 QDISSKVSSLNQRIRALRENLDE 441 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444443333
No 67
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.40 E-value=2.7e-05 Score=77.35 Aligned_cols=155 Identities=17% Similarity=0.326 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHH-
Q 010712 61 EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEP----VKLEFQKS- 135 (503)
Q Consensus 61 EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~----Lk~ELeqL- 135 (503)
+|+.|..++.+|+..+...+..|..++.++.++...+.. ++.++.+|+.++..++.++.++.. ++..+..+
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~----~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~ 86 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEA----LEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVK 86 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 455666666667666666666677777776666665533 333444555555555554443221 22222222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 136 -KTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYIT 214 (503)
Q Consensus 136 -raELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~s 214 (503)
..++..|..+.+.+..++..|+.+|..+..+++ .+..+|..++.++.+++..+..+++.++. .+..+.+....
T Consensus 87 ~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~---~l~~~i~~l~~~~~~~e~~~~e~~~~~e~---e~~~i~e~~~~ 160 (239)
T COG1579 87 DERELRALNIEIQIAKERINSLEDELAELMEEIE---KLEKEIEDLKERLERLEKNLAEAEARLEE---EVAEIREEGQE 160 (239)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 234555555555555555566655555544333 34555666666666655555554444332 33344444444
Q ss_pred HHHHHHHHHHH
Q 010712 215 MATEVEKLRAE 225 (503)
Q Consensus 215 m~rEIekLraE 225 (503)
...+.+.|.++
T Consensus 161 ~~~~~~~L~~~ 171 (239)
T COG1579 161 LSSKREELKEK 171 (239)
T ss_pred HHHHHHHHHHh
Confidence 44444444443
No 68
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=98.40 E-value=4.7e-05 Score=80.73 Aligned_cols=103 Identities=15% Similarity=0.102 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 010712 132 FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKN 211 (503)
Q Consensus 132 LeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~ 211 (503)
+++++.++.....+++.|..+++.|..+|.+..--.++.+.+.+|.+.|-+||+++..+++.+.+.+.+.+-+.+..-+.
T Consensus 332 l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~s 411 (622)
T COG5185 332 LEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKS 411 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHH
Confidence 44444444444444444555555555555443333445566777788888888888888777777777766666666666
Q ss_pred HHHHHHHHHHHHHHHHhcccccc
Q 010712 212 YITMATEVEKLRAELMNAPNVDR 234 (503)
Q Consensus 212 L~sm~rEIekLraELekle~el~ 234 (503)
++..-+.+..|..+|.-....+.
T Consensus 412 lek~~~~~~sl~~~i~~~~~~i~ 434 (622)
T COG5185 412 LEKTLRQYDSLIQNITRSRSQIG 434 (622)
T ss_pred HHHHHHHHHHHHHHhcccHHHHh
Confidence 66666666666666555444343
No 69
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.40 E-value=0.00019 Score=72.15 Aligned_cols=50 Identities=18% Similarity=0.337 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 010712 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGM 100 (503)
Q Consensus 51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~l 100 (503)
+...|.....+|..+..+...++.+++.|..++..+...+..++.++.++
T Consensus 29 ~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~ 78 (265)
T COG3883 29 LSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQS 78 (265)
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33335555555555555555555555555555555555555555554433
No 70
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.40 E-value=4.7e-05 Score=86.97 Aligned_cols=124 Identities=17% Similarity=0.298 Sum_probs=58.5
Q ss_pred CCCCCChHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH--HHHHHHHHH
Q 010712 42 FDMMPPPEVMEQK--------IASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS--ERELQMRNL 111 (503)
Q Consensus 42 ~~~~p~p~~LEqe--------Ie~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lka--e~E~el~eL 111 (503)
|-.|+++..|++- |-..+.++..|..+.++|+..+..-...|..++++++.+...++.+.. .+...|+.|
T Consensus 155 Fa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l 234 (1072)
T KOG0979|consen 155 FARLSPIELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELL 234 (1072)
T ss_pred HHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666665543 444455555555555555555555555555555555555554443322 122233333
Q ss_pred HHHHH---------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 112 TEKIA---------KMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT 165 (503)
Q Consensus 112 ~eki~---------kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~ 165 (503)
..+.. ++.+.+...+.+++++..+..+++.+...+.+|+.++.++..++...+.
T Consensus 235 ~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~ 297 (1072)
T KOG0979|consen 235 EKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQR 297 (1072)
T ss_pred HHhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHH
Confidence 22211 1112222334455555555555555555555555555555555544333
No 71
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=98.39 E-value=0.00018 Score=69.63 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHhcc
Q 010712 215 MATEVEKLRAELMNAP 230 (503)
Q Consensus 215 m~rEIekLraELekle 230 (503)
+..++..|..||..+.
T Consensus 169 ~~~~~~~l~~ei~~L~ 184 (194)
T PF15619_consen 169 AQEEVKSLQEEIQRLN 184 (194)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 72
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=98.39 E-value=0.00048 Score=70.49 Aligned_cols=169 Identities=16% Similarity=0.159 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH--H--HHHHHHHHHHHHHHHHHHHHHHh-HHHHH
Q 010712 57 SQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS--E--RELQMRNLTEKIAKMEAELKTAE-PVKLE 131 (503)
Q Consensus 57 ~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lka--e--~E~el~eL~eki~kLEaEL~~le-~Lk~E 131 (503)
.+...|..|..++..|..++...+.+...+..++..|+..-..+.+ + -+--.+.|..+|..++.+...+. .+..|
T Consensus 24 ~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~E 103 (310)
T PF09755_consen 24 QLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQE 103 (310)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555555555566666655555433332 2 22234567777777777666542 33333
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHH
Q 010712 132 ----FQKSKTEAQNLVVAREELIAKVHQLTQD-LQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYN-DHLESL 205 (503)
Q Consensus 132 ----LeqLraELqqL~~erqeLe~qiq~L~~E-Lqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~-el~eql 205 (503)
...|...|.+|..+..+|+..+..=..- +.+|...+ ..+..++..++.++++|+.+.-.++..++ +...-+
T Consensus 104 EE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i---~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lv 180 (310)
T PF09755_consen 104 EEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKI---ERLEKEKSAKQEELERLRREKVDLENTLEQEQEALV 180 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2233444445554444444443321111 12232222 22333333344444444443332222222 222234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 010712 206 QVMEKNYITMATEVEKLRAELMN 228 (503)
Q Consensus 206 qemEk~L~sm~rEIekLraELek 228 (503)
..+.+.+..|..|...|+++|+.
T Consensus 181 N~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 181 NRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 55666666666666666666554
No 73
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.38 E-value=0.00012 Score=83.50 Aligned_cols=19 Identities=21% Similarity=0.149 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHhhHHH
Q 010712 175 SELESLRQEYHHCRGTYEY 193 (503)
Q Consensus 175 ~EIe~L~qELq~lR~ele~ 193 (503)
..|+....+.++++..|+.
T Consensus 436 ~~lEea~~eker~~e~l~e 454 (775)
T PF10174_consen 436 ETLEEALREKERLQERLEE 454 (775)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 74
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=98.38 E-value=0.00012 Score=82.59 Aligned_cols=44 Identities=23% Similarity=0.138 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 171 PALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYIT 214 (503)
Q Consensus 171 ~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~s 214 (503)
+.++.|+..+..|++++...++...........++.+++++...
T Consensus 497 e~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~ 540 (980)
T KOG0980|consen 497 ESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDR 540 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Confidence 34444444444455555544444444444444445554444443
No 75
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.38 E-value=1.9e-05 Score=89.74 Aligned_cols=157 Identities=18% Similarity=0.164 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHH---HHHHHHHHHHHHHHHHHHHH
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERE---LQMRNLTEKIAKMEAELKTA 125 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E---~el~eL~eki~kLEaEL~~l 125 (503)
..|+.+|+.+...|..|+.++..-.+.+..|+++|+.++.++.+|+.++.....+.. ....+|.+....++.--...
T Consensus 173 ~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~y 252 (1195)
T KOG4643|consen 173 LHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTY 252 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCcc
Confidence 567888888888888888888888888888888888888888888877765443221 11122211111111000001
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 010712 126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESL 205 (503)
Q Consensus 126 e~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eql 205 (503)
..-..++.-++..+..|+..-..|..+.+.|+.+|++++.+.+. ..+..+|-.+++.+..++.+....+.+.+++.++.
T Consensus 253 kerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~-~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEn 331 (1195)
T KOG4643|consen 253 KERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG-ATLESEIIQLKQKLDDMRSERDTDRHKTEELHEEN 331 (1195)
T ss_pred chhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc-CChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 12223333445555555555555555556666666655554433 33344444444444444444444444444444433
Q ss_pred H
Q 010712 206 Q 206 (503)
Q Consensus 206 q 206 (503)
.
T Consensus 332 s 332 (1195)
T KOG4643|consen 332 S 332 (1195)
T ss_pred H
Confidence 3
No 76
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.36 E-value=0.0001 Score=82.16 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHhcccc
Q 010712 216 ATEVEKLRAELMNAPNV 232 (503)
Q Consensus 216 ~rEIekLraELekle~e 232 (503)
+.-+..++++|+.+++.
T Consensus 290 eelVk~~qeeLd~lkqt 306 (1265)
T KOG0976|consen 290 EELVKELQEELDTLKQT 306 (1265)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444455544443
No 77
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.35 E-value=3e-05 Score=86.30 Aligned_cols=55 Identities=20% Similarity=0.165 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712 179 SLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 179 ~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el 233 (503)
.++.+++.+...++.+++...++.+.+.++.+....+...|++++..|..++..+
T Consensus 380 el~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l 434 (569)
T PRK04778 380 ELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYL 434 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444555555555444433
No 78
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.34 E-value=0.00041 Score=69.78 Aligned_cols=76 Identities=13% Similarity=0.208 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHH
Q 010712 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK 123 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~ 123 (503)
+..-+.+|..++.+++.++.+++.|..++..+..++..++.++..++..|..++.+++.--+.+.++-..|+..++
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raR 108 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRAR 108 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667778888888888888888888888888877888777777777777765555333333333333333444433
No 79
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.34 E-value=0.0001 Score=82.07 Aligned_cols=37 Identities=14% Similarity=0.270 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhhhhccch-HHHHHHHHHHHHHHHHH
Q 010712 82 ELAAAQHELQILHGQIGGMK-SERELQMRNLTEKIAKM 118 (503)
Q Consensus 82 eLa~lq~EL~~L~~qL~~lk-ae~E~el~eL~eki~kL 118 (503)
+|..++.+|..+...|..+. ...+..+..+.++|+.|
T Consensus 257 ~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~L 294 (569)
T PRK04778 257 EIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQL 294 (569)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 34444444444433333322 23333444444444443
No 80
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.34 E-value=0.00016 Score=87.00 Aligned_cols=51 Identities=8% Similarity=0.227 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010712 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG 98 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~ 98 (503)
.+.|+++++.+...|+.+..+.+.++..+.....++..++.++..++.++.
T Consensus 602 ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~ 652 (1201)
T PF12128_consen 602 EEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELK 652 (1201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777776666666666665555555555555554444443
No 81
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.33 E-value=0.00013 Score=87.94 Aligned_cols=30 Identities=13% Similarity=0.267 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712 202 LESLQVMEKNYITMATEVEKLRAELMNAPN 231 (503)
Q Consensus 202 ~eqlqemEk~L~sm~rEIekLraELekle~ 231 (503)
...++++++++..++..+..+...+.+++.
T Consensus 847 ~~~~~~le~~~~~~~~~~~~~~~~l~~l~~ 876 (1201)
T PF12128_consen 847 KQRRKELEEELKALEEQLEQLEEQLRRLRD 876 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555554433
No 82
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.33 E-value=0.00012 Score=81.86 Aligned_cols=14 Identities=14% Similarity=0.029 Sum_probs=6.5
Q ss_pred HHHHHHHHhccccc
Q 010712 220 EKLRAELMNAPNVD 233 (503)
Q Consensus 220 ekLraELekle~el 233 (503)
+.|..+-+.|.+.+
T Consensus 247 q~l~~e~e~L~~q~ 260 (617)
T PF15070_consen 247 QQLASEKEELHKQL 260 (617)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444555443
No 83
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=98.33 E-value=8.2e-05 Score=82.93 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010712 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQ 96 (503)
Q Consensus 50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~q 96 (503)
.-+++++.+..+|+.|..+...+..++..++.++..+..++...+..
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~ 371 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAE 371 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555544444444444444333
No 84
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.32 E-value=0.00026 Score=79.99 Aligned_cols=101 Identities=23% Similarity=0.249 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH----------HHHHHHHHHHHHHHH
Q 010712 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS----------ERELQMRNLTEKIAK 117 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lka----------e~E~el~eL~eki~k 117 (503)
+..|+.+|.....++.+...++.+|...+..|+.+.+.+..+...|+.+|...+. ++|.+--.|++++..
T Consensus 36 i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~ 115 (717)
T PF09730_consen 36 ILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSV 115 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 5667777777777777778888888888888877777777777777777765432 444444455555555
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 010712 118 MEAELKTAEPVKLEFQKSKTEAQNLVVAREE 148 (503)
Q Consensus 118 LEaEL~~le~Lk~ELeqLraELqqL~~erqe 148 (503)
|+.--.+++.|+-||..+..|++-|+.++.+
T Consensus 116 Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee 146 (717)
T PF09730_consen 116 LKQSQVEFEGLKHEIKRLEEEIELLNSQLEE 146 (717)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444455555555555554444444333
No 85
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=98.32 E-value=1.1e-07 Score=108.18 Aligned_cols=70 Identities=16% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712 162 RAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (503)
Q Consensus 162 rlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~ 231 (503)
.+..+++++..++.+|+.+++++..++.++..+...++.+..++..+++.+..+..+.+.|..+.+.++.
T Consensus 350 ~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e 419 (713)
T PF05622_consen 350 MLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRE 419 (713)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555566667777777777777776666666666666666666666666666666666555543
No 86
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=98.32 E-value=9.9e-06 Score=91.95 Aligned_cols=46 Identities=20% Similarity=0.397 Sum_probs=20.1
Q ss_pred CCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010712 312 GPGYEASKGPGYDASKAPS-YDPTKGPSYDPAKGPGYDPTKGPGYDAQK 359 (503)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~-~~~s~~~~y~~~~~~~y~~~~~p~y~~~~ 359 (503)
++.|+ -+.++|+..+.+. ...|+.|.|++ ++|.++-+++|+|+.++
T Consensus 743 ~~sYg-~~~~~~g~~~~~~~~~Gs~tp~~~s-~tpl~~~s~tp~~~~~~ 789 (1024)
T KOG1999|consen 743 TSSYG-ERTPGYGRVTPARYGMGSSTPMYGS-NTPLWGGSRTPARDGGA 789 (1024)
T ss_pred ccccc-cccccccccCccccCCCCcCccCCC-CCCCCCcccCccccCCC
Confidence 33444 3455555555444 24444455543 34444333444333333
No 87
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.31 E-value=0.00014 Score=88.00 Aligned_cols=50 Identities=18% Similarity=0.249 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 010712 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGM 100 (503)
Q Consensus 51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~l 100 (503)
|.++.......|+.|..+..++..++..|+.+|..++.++....+.+..+
T Consensus 1234 LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l 1283 (1822)
T KOG4674|consen 1234 LREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKL 1283 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555555555555555555555554444444444433
No 88
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=98.31 E-value=0.00027 Score=72.27 Aligned_cols=44 Identities=25% Similarity=0.302 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 010712 176 ELESLRQEYHHCRGTYEYEKKF-YNDHLESLQVMEKNYITMATEV 219 (503)
Q Consensus 176 EIe~L~qELq~lR~ele~ekk~-~~el~eqlqemEk~L~sm~rEI 219 (503)
+++.|+.|..+++..|+.++.. +..+.+++..|+.+...|+..|
T Consensus 157 ~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l 201 (310)
T PF09755_consen 157 ELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKL 201 (310)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443322 2333344444444444444433
No 89
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.30 E-value=0.00013 Score=88.66 Aligned_cols=51 Identities=14% Similarity=0.108 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 176 ELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 226 (503)
Q Consensus 176 EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraEL 226 (503)
.++++.++|+.++.+++.+.+.+..+.+++.++.+.+..+..++......+
T Consensus 922 ~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~~~a~~~~ 972 (1353)
T TIGR02680 922 MVDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKRAEADATL 972 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666666666666666666666664443333
No 90
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.28 E-value=0.00032 Score=80.21 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQIL 93 (503)
Q Consensus 51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L 93 (503)
|+.+++.+.++|+.+...+.+|+.....|..+++.+..++...
T Consensus 413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~ 455 (1195)
T KOG4643|consen 413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTV 455 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555444444444444444444444443333
No 91
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=98.27 E-value=0.00061 Score=68.43 Aligned_cols=42 Identities=31% Similarity=0.299 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 83 LAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKT 124 (503)
Q Consensus 83 La~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~ 124 (503)
|+.++.+|+..+...+...+.++.++..|..+|.+..+|+.-
T Consensus 65 l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~ 106 (258)
T PF15397_consen 65 LQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNF 106 (258)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444445555555555555555443
No 92
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=98.27 E-value=0.00023 Score=80.42 Aligned_cols=53 Identities=23% Similarity=0.112 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 010712 174 LSELESLRQEYHHCRGTYEYEKKFYNDHLE----SLQVMEKNYITMATEVEKLRAEL 226 (503)
Q Consensus 174 ~~EIe~L~qELq~lR~ele~ekk~~~el~e----qlqemEk~L~sm~rEIekLraEL 226 (503)
...++.+++|+..+-.+++.++..+..+.+ ++..++..+....++...+..++
T Consensus 493 ~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~ 549 (980)
T KOG0980|consen 493 AKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVARE 549 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 334566666666666666666655443333 34444445555555555555444
No 93
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=98.26 E-value=4.8e-05 Score=77.80 Aligned_cols=39 Identities=26% Similarity=0.425 Sum_probs=28.2
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010712 60 VEM-QKLATENQRLAATHGTLRQELAAAQHELQILHGQIG 98 (503)
Q Consensus 60 ~EI-q~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~ 98 (503)
.+| +.|..+|+.|..+...|.++|.....+|..|+.++.
T Consensus 82 A~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~ 121 (306)
T PF04849_consen 82 ARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELS 121 (306)
T ss_pred HHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 667777777877777888888777777777777663
No 94
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.26 E-value=0.00037 Score=77.55 Aligned_cols=50 Identities=12% Similarity=0.251 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG 98 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~ 98 (503)
..+++.|+....+|+.+..++..|...-..-+.++..++...+.+++.+.
T Consensus 104 ~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll 153 (560)
T PF06160_consen 104 KEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELL 153 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555555555543
No 95
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=98.26 E-value=0.00015 Score=79.08 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 010712 72 LAATHGTLRQELAAAQHELQILH 94 (503)
Q Consensus 72 La~e~~~LrqeLa~lq~EL~~L~ 94 (503)
|..++..++++|..++.++...+
T Consensus 166 l~~ql~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 166 IDEQIKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555544
No 96
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.26 E-value=0.00024 Score=86.08 Aligned_cols=152 Identities=20% Similarity=0.198 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-------h--HHHHHHHHHHHHHHHHHHHH
Q 010712 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGM-------K--SERELQMRNLTEKIAKMEAE 121 (503)
Q Consensus 51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~l-------k--ae~E~el~eL~eki~kLEaE 121 (503)
|-.+.+....++.-+..++.+|..++..+.+.++.++..|...+..-... . -....+|..|.+--..|.++
T Consensus 1158 LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee 1237 (1822)
T KOG4674|consen 1158 LRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREE 1237 (1822)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHH
Confidence 33444444444444555555555555555555555554444444332110 0 01122333333333333333
Q ss_pred HH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhh------------HHHHHHHH
Q 010712 122 LK----TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ-------RAHTDVQQI------------PALLSELE 178 (503)
Q Consensus 122 L~----~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELq-------rlk~elqqi------------~~l~~EIe 178 (503)
+. ++..|+.+|..++.++..++....++..+++..+.++. +.+...+.| ..+..+|.
T Consensus 1238 ~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~ 1317 (1822)
T KOG4674|consen 1238 NEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEIS 1317 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 32 34455555555555555555555555555544444444 333332222 33444455
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Q 010712 179 SLRQEYHHCRGTYEYEKKFYNDHL 202 (503)
Q Consensus 179 ~L~qELq~lR~ele~ekk~~~el~ 202 (503)
.|+.|+...+..++.+++.+..++
T Consensus 1318 ~Lk~el~~ke~~~~el~~~~~~~q 1341 (1822)
T KOG4674|consen 1318 RLKEELEEKENLIAELKKELNRLQ 1341 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555544444444444444444
No 97
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.25 E-value=0.00038 Score=77.27 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010712 205 LQVMEKNYITMATEVEKLRAELMNAP 230 (503)
Q Consensus 205 lqemEk~L~sm~rEIekLraELekle 230 (503)
+.+|+..+..++-|.++|..+|...+
T Consensus 294 ~~~l~~~~~~LELeN~~l~tkL~rwE 319 (716)
T KOG4593|consen 294 LEKLQSTLLGLELENEDLLTKLQRWE 319 (716)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555443
No 98
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.25 E-value=0.0001 Score=85.55 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=14.5
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 010712 49 EVMEQKIASQH---VEMQKLATENQRLAATHGTLR 80 (503)
Q Consensus 49 ~~LEqeIe~~~---~EIq~Le~enqrLa~e~~~Lr 80 (503)
..++++..... .....|+....++..+...|+
T Consensus 451 ~~~~~~~~~~~~~~~~~keL~e~i~~lk~~~~el~ 485 (1317)
T KOG0612|consen 451 EKLDEKCQAVAELEEMDKELEETIEKLKSEESELQ 485 (1317)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443333 344445544455544444444
No 99
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.25 E-value=0.00015 Score=83.00 Aligned_cols=27 Identities=15% Similarity=0.329 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 53 QKIASQHVEMQKLATENQRLAATHGTL 79 (503)
Q Consensus 53 qeIe~~~~EIq~Le~enqrLa~e~~~L 79 (503)
+.++.....|+.|+.+..+|..+++.+
T Consensus 195 ~~~~~~~~~l~~L~~~~~~l~kdVE~~ 221 (1072)
T KOG0979|consen 195 DKLTTKTEKLNRLEDEIDKLEKDVERV 221 (1072)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444
No 100
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.25 E-value=0.00028 Score=79.84 Aligned_cols=148 Identities=18% Similarity=0.216 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhccchHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 78 TLRQELAAAQHELQILHGQIGGMKSERELQM---RNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVH 154 (503)
Q Consensus 78 ~LrqeLa~lq~EL~~L~~qL~~lkae~E~el---~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq 154 (503)
.+..+|..++.+|..++..+...+++.+.-. .+|.+....++.+ ...|+.||.++|..-..+.....+|+.+.-
T Consensus 31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~---~~~lr~e~ke~K~rE~rll~dyselEeENi 107 (717)
T PF09730_consen 31 YLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELE---RKRLREEIKEYKFREARLLQDYSELEEENI 107 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3444455555555555555544444333221 2222222222222 223555555555555555555666666665
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 155 QLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (503)
Q Consensus 155 ~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELek 228 (503)
.|++++..|+.-.-+.+.++-||..|..|++-++..++.+.+.......++.+.-+.|+.-......|++||+.
T Consensus 108 slQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~ 181 (717)
T PF09730_consen 108 SLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELDQ 181 (717)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555555554433445555555555555555555555555544444444444333333333333456666665
No 101
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=98.25 E-value=0.0002 Score=75.60 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 50 VMEQKIASQHVEMQKLATENQRLAA 74 (503)
Q Consensus 50 ~LEqeIe~~~~EIq~Le~enqrLa~ 74 (503)
.++.++..+..++.+|..+..+|..
T Consensus 78 ~~~~~l~~l~~~~~~l~a~~~~l~~ 102 (423)
T TIGR01843 78 DVEADAAELESQVLRLEAEVARLRA 102 (423)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555444433
No 102
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=98.25 E-value=0.00031 Score=72.71 Aligned_cols=64 Identities=20% Similarity=0.201 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcccc
Q 010712 169 QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITM----ATEVEKLRAELMNAPNV 232 (503)
Q Consensus 169 qi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm----~rEIekLraELekle~e 232 (503)
++...+.++++++.+++.++..|+..+.++.++..+++++++.+... ..||.+|++++..+++.
T Consensus 219 ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 219 EIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 44556666777777777777777777777777777777777766654 78899999999888775
No 103
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.00024 Score=76.71 Aligned_cols=53 Identities=25% Similarity=0.307 Sum_probs=29.1
Q ss_pred ChHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 010712 47 PPEVMEQKIASQHVEMQK--------------LATENQRLAATHGTLRQELAAAQHELQILHGQIGG 99 (503)
Q Consensus 47 ~p~~LEqeIe~~~~EIq~--------------Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~ 99 (503)
.++.|.++|+.+..|+.. |..+...|+.++++|+.+++.++.+|+.++..+.+
T Consensus 9 ~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q 75 (772)
T KOG0999|consen 9 EVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQ 75 (772)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555554433 22333445555566666666666667666666654
No 104
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.24 E-value=0.00034 Score=78.37 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712 56 ASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI 97 (503)
Q Consensus 56 e~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL 97 (503)
..+..+++.|..++..|..+.......+..+...|..|+.++
T Consensus 25 a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~ 66 (617)
T PF15070_consen 25 AQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQM 66 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333444444444444433333334444444444444443
No 105
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=98.23 E-value=7.6e-05 Score=77.21 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Q 010712 107 QMRNLTEKIAKMEAELKTAEPVKLEF 132 (503)
Q Consensus 107 el~eL~eki~kLEaEL~~le~Lk~EL 132 (503)
-+..|.++...|+.|+..+..+..++
T Consensus 173 ~~~~l~~~~~~L~~e~~~L~~~~~e~ 198 (312)
T smart00787 173 IKPKLRDRKDALEEELRQLKQLEDEL 198 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33444445555555555554444443
No 106
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.22 E-value=0.00032 Score=77.35 Aligned_cols=55 Identities=27% Similarity=0.343 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhccchH
Q 010712 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAA--AQHELQILHGQIGGMKS 102 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~--lq~EL~~L~~qL~~lka 102 (503)
.+..-|+|..++.+++.+..++..|..++..|+.+|+. .+.+|....+.|..+.+
T Consensus 404 ~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~ 460 (961)
T KOG4673|consen 404 REEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMA 460 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 45566777777777777777777777777777777764 23455555555555444
No 107
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=98.22 E-value=0.00023 Score=75.16 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010712 59 HVEMQKLATENQRLAATHGTL 79 (503)
Q Consensus 59 ~~EIq~Le~enqrLa~e~~~L 79 (503)
..++..|+.+..++..++..|
T Consensus 80 ~~~l~~l~~~~~~l~a~~~~l 100 (423)
T TIGR01843 80 EADAAELESQVLRLEAEVARL 100 (423)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 108
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=98.22 E-value=0.00015 Score=65.79 Aligned_cols=49 Identities=27% Similarity=0.260 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 116 AKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH 164 (503)
Q Consensus 116 ~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk 164 (503)
.+.+.||......-.+|..++.++..+...+.+|..+++.....|...+
T Consensus 45 ~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e 93 (132)
T PF07926_consen 45 QKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESE 93 (132)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444454444444455555566666655555555555555555554433
No 109
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.21 E-value=8.7e-05 Score=82.54 Aligned_cols=11 Identities=27% Similarity=0.447 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 010712 173 LLSELESLRQE 183 (503)
Q Consensus 173 l~~EIe~L~qE 183 (503)
+..+|+.+...
T Consensus 349 l~~~l~~l~~~ 359 (560)
T PF06160_consen 349 LEKQLKELEKR 359 (560)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 110
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=0.00057 Score=76.71 Aligned_cols=64 Identities=14% Similarity=0.061 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 010712 172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRR 235 (503)
Q Consensus 172 ~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~~ 235 (503)
..+..+.++.+.+..|+.+++...+.+.++..++.+.+.++..+......|+.|++.++..+.+
T Consensus 556 ~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~ 619 (698)
T KOG0978|consen 556 MLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLER 619 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555556666666666666666666666666666666655555556666655555543
No 111
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=98.20 E-value=0.00046 Score=70.70 Aligned_cols=13 Identities=38% Similarity=0.601 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 010712 109 RNLTEKIAKMEAE 121 (503)
Q Consensus 109 ~eL~eki~kLEaE 121 (503)
..|+.|++.|+.|
T Consensus 163 e~Lq~Klk~LEeE 175 (306)
T PF04849_consen 163 EALQEKLKSLEEE 175 (306)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 112
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=98.20 E-value=0.00076 Score=68.43 Aligned_cols=103 Identities=15% Similarity=0.215 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 010712 128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQ----IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLE 203 (503)
Q Consensus 128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqq----i~~l~~EIe~L~qELq~lR~ele~ekk~~~el~e 203 (503)
|.-++..++...+-|...+...+.++..|+.++...+..+.+ ++.+..++...+..+..++..+..++.++.....
T Consensus 135 mn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~ 214 (305)
T PF14915_consen 135 MNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIG 214 (305)
T ss_pred hcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 334455555555556666666666666666666554443322 2333444444445555555555555555555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010712 204 SLQVMEKNYITMATEVEKLRAELMNAP 230 (503)
Q Consensus 204 qlqemEk~L~sm~rEIekLraELekle 230 (503)
.-..+++.|..+..|-.=|+..|+.+.
T Consensus 215 Kqes~eERL~QlqsEN~LLrQQLddA~ 241 (305)
T PF14915_consen 215 KQESLEERLSQLQSENMLLRQQLDDAH 241 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555554443
No 113
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.19 E-value=0.00013 Score=83.96 Aligned_cols=49 Identities=8% Similarity=0.077 Sum_probs=32.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 010712 186 HCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDR 234 (503)
Q Consensus 186 ~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~ 234 (503)
.+...++..+..+.++.++....|+.+.++.+.|.+|...|++|+.+..
T Consensus 1588 ~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~ 1636 (1758)
T KOG0994|consen 1588 GADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAA 1636 (1758)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555566666666777777777777778888887777766543
No 114
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.17 E-value=0.00046 Score=72.69 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 010712 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG 99 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~ 99 (503)
-.+++.++..++.+++.|+.+-.-..+....++++...+.++...|++++.+
T Consensus 217 r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~re 268 (502)
T KOG0982|consen 217 RIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRRE 268 (502)
T ss_pred hhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566777777777777777655555556777888888888887777777654
No 115
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=98.17 E-value=8.1e-05 Score=82.30 Aligned_cols=38 Identities=13% Similarity=0.279 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAA 85 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~ 85 (503)
...||++|.....++..++..|..|...++-+..+|..
T Consensus 93 ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~q 130 (916)
T KOG0249|consen 93 NDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQ 130 (916)
T ss_pred hHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHh
Confidence 46677777777777777777777777666666555543
No 116
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.17 E-value=0.00029 Score=82.00 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHhccc
Q 010712 215 MATEVEKLRAELMNAPN 231 (503)
Q Consensus 215 m~rEIekLraELekle~ 231 (503)
++++++-+..+++.+.+
T Consensus 672 ~e~~lk~~q~~~eq~~~ 688 (1317)
T KOG0612|consen 672 LERKLKMLQNELEQENA 688 (1317)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 117
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.0007 Score=73.24 Aligned_cols=57 Identities=21% Similarity=0.221 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH---HHHHHHHhc
Q 010712 173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLESL----QVMEKNYITMATEVE---KLRAELMNA 229 (503)
Q Consensus 173 l~~EIe~L~qELq~lR~ele~ekk~~~el~eql----qemEk~L~sm~rEIe---kLraELekl 229 (503)
.+-|.+.|+.|+.+++.+++.++..+++..... +-||+.|..+..|.+ .|+.||+..
T Consensus 192 sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkkEL~q~ 255 (772)
T KOG0999|consen 192 SQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNALKKELSQY 255 (772)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 344566677777777777777666555433211 234445555554443 344555443
No 118
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=98.17 E-value=0.00026 Score=75.31 Aligned_cols=128 Identities=13% Similarity=0.090 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 010712 106 LQMRNLTEKIAKMEAELKTAEP----VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLR 181 (503)
Q Consensus 106 ~el~eL~eki~kLEaEL~~le~----Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~ 181 (503)
..++.|.++...|+.+...++. |+...+..-..+++|+.++...+.+++.|+..+..|+.++.+-.--..+.+.+.
T Consensus 295 ~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn 374 (622)
T COG5185 295 QKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMN 374 (622)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHH
Confidence 3444444444444444433322 222222233335566666666666666666666655555444333345566677
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712 182 QEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 182 qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el 233 (503)
+|-++|-.+|+..+-+.+++.+.+.+.+-+.+...++++++-.++..+..++
T Consensus 375 ~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i 426 (622)
T COG5185 375 QEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNI 426 (622)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777777777777777777777777676666677776666666665554
No 119
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=98.16 E-value=0.00084 Score=68.13 Aligned_cols=116 Identities=15% Similarity=0.230 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHH---
Q 010712 50 VMEQKIASQHVEMQKLATENQ----RLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAEL--- 122 (503)
Q Consensus 50 ~LEqeIe~~~~EIq~Le~enq----rLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL--- 122 (503)
.|..+|..+.-||..+..+++ +...+++.+++..+.++..|..-...|.+.......++..|.+.-..|..+|
T Consensus 3 ~Lq~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~E 82 (305)
T PF14915_consen 3 MLQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKE 82 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHh
Confidence 477888888888888776654 4566777788888888877776666666655666677777777665555444
Q ss_pred -HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 123 -KTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT 165 (503)
Q Consensus 123 -~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~ 165 (503)
...+.|..||+..+.-|..+..+..+.......|+-.+++.+.
T Consensus 83 Kq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rd 126 (305)
T PF14915_consen 83 KQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARD 126 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhh
Confidence 3456788888777776666555555444444444444444433
No 120
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=98.16 E-value=0.00069 Score=64.89 Aligned_cols=174 Identities=19% Similarity=0.186 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHH-------
Q 010712 52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKT------- 124 (503)
Q Consensus 52 EqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~------- 124 (503)
+-.+..++.+|+.|+.+..+.+..+..+.++|..+.+.-......+.. ++.....+.+++..++.+++.
T Consensus 3 e~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv----~enr~~kdEE~~e~~e~qLkEAk~iaE~ 78 (205)
T KOG1003|consen 3 EADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKV----IENRAQKLEEKMEAQEAQLKEAKHIAEK 78 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777766666666666554433322222211 111222233333333333322
Q ss_pred ----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------hHHHHHHHHHHHHHHHHHHh
Q 010712 125 ----AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQ-----------IPALLSELESLRQEYHHCRG 189 (503)
Q Consensus 125 ----le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqq-----------i~~l~~EIe~L~qELq~lR~ 189 (503)
.+.+-..|.-+..+|.........-+.++.+|..++..+.+.+.. ......+|..+...|.....
T Consensus 79 adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~ 158 (205)
T KOG1003|consen 79 ADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAET 158 (205)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhh
Confidence 222222333344444444444444444444554444433333222 22333444444444444444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712 190 TYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229 (503)
Q Consensus 190 ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekl 229 (503)
.-+...+.+..+.+.+.+++..+..+..+...+..+|+.+
T Consensus 159 rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~ 198 (205)
T KOG1003|consen 159 RAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDET 198 (205)
T ss_pred hHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4444555555666666666666666666666666666554
No 121
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=98.15 E-value=0.00056 Score=63.15 Aligned_cols=28 Identities=11% Similarity=0.152 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 200 DHLESLQVMEKNYITMATEVEKLRAELM 227 (503)
Q Consensus 200 el~eqlqemEk~L~sm~rEIekLraELe 227 (503)
.+..+++.++.....+++.++.|...+.
T Consensus 112 ~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 112 HFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444443
No 122
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=98.15 E-value=0.00046 Score=68.31 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 010712 210 KNYITMATEVEKLRAELMNA 229 (503)
Q Consensus 210 k~L~sm~rEIekLraELekl 229 (503)
+.++.|..|...|+.||+-.
T Consensus 164 esvqRLkdEardlrqelavr 183 (333)
T KOG1853|consen 164 ESVQRLKDEARDLRQELAVR 183 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444555555566666543
No 123
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=98.14 E-value=0.0013 Score=64.00 Aligned_cols=39 Identities=13% Similarity=0.296 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 010712 107 QMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVA 145 (503)
Q Consensus 107 el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~e 145 (503)
++.+|..++...+.+...+..++..+..+..++..+.-+
T Consensus 70 e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e 108 (201)
T PF13851_consen 70 EVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWE 108 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433333333333333333333333333
No 124
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=98.14 E-value=0.00028 Score=74.02 Aligned_cols=100 Identities=20% Similarity=0.244 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhh-----------
Q 010712 106 LQMRNLTEKIAKMEAELK----TAEPVKLEFQKSKTEAQNLV-VAREELIAKVHQLTQDLQRAHTDVQQ----------- 169 (503)
Q Consensus 106 ~el~eL~eki~kLEaEL~----~le~Lk~ELeqLraELqqL~-~erqeLe~qiq~L~~ELqrlk~elqq----------- 169 (503)
-.+..|..+|.+++++-. .++.|+.|..++...+++-+ .....|-+++++|+++..-|+..+.+
T Consensus 158 f~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdi 237 (552)
T KOG2129|consen 158 FFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDI 237 (552)
T ss_pred HHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhh
Confidence 345666777777765322 12444444444333332211 22233444445554444433333221
Q ss_pred --h--------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 010712 170 --I--------PALLSELESLRQEYHHCRGTYEYEKKFYNDHLESL 205 (503)
Q Consensus 170 --i--------~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eql 205 (503)
+ ..++.-|+.|+.|++++|..+...++.+.+...++
T Consensus 238 a~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy 283 (552)
T KOG2129|consen 238 AKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQY 283 (552)
T ss_pred hcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 23344578888888888887777766665544443
No 125
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.13 E-value=0.00042 Score=79.87 Aligned_cols=34 Identities=21% Similarity=0.188 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010712 65 LATENQRLAATHGTLRQELAAAQHELQILHGQIG 98 (503)
Q Consensus 65 Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~ 98 (503)
|+.+++-+..++..++..|...+.||+.+...|.
T Consensus 688 le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~ 721 (1141)
T KOG0018|consen 688 LEMRLKYSKLDLEQLKRSLEQNELELQRTESEID 721 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555555555555554
No 126
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.13 E-value=0.00058 Score=83.17 Aligned_cols=37 Identities=30% Similarity=0.386 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELA 84 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa 84 (503)
+..|+.+|..+..+|..+..++..|...+..|..+..
T Consensus 744 i~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~ 780 (1353)
T TIGR02680 744 IAELDARLAAVDDELAELARELRALGARQRALADELA 780 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999988888888888777777644
No 127
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=98.12 E-value=0.00073 Score=74.25 Aligned_cols=24 Identities=13% Similarity=0.055 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhccccccc
Q 010712 212 YITMATEVEKLRAELMNAPNVDRR 235 (503)
Q Consensus 212 L~sm~rEIekLraELekle~el~~ 235 (503)
+..++++++.+..+|++++..|..
T Consensus 319 I~~le~~l~~~~~~leel~~kL~~ 342 (629)
T KOG0963|consen 319 ISALEKELKAKISELEELKEKLNS 342 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445677777777777777776643
No 128
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=98.12 E-value=0.00043 Score=79.47 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010712 70 QRLAATHGTLRQELAAAQHELQILHGQ 96 (503)
Q Consensus 70 qrLa~e~~~LrqeLa~lq~EL~~L~~q 96 (503)
+=|..++..++++|+.++.+++..+.+
T Consensus 197 ~~L~~ql~~l~~~l~~aE~~l~~fk~~ 223 (754)
T TIGR01005 197 DFLAPEIADLSKQSRDAEAEVAAYRAQ 223 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666655555443
No 129
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=98.11 E-value=0.00012 Score=73.18 Aligned_cols=60 Identities=18% Similarity=0.283 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 172 ALLSELESLRQEYHHCRGTYEYEKKFYN-------------------------DHLESLQVMEKNYITMATEVEKLRAEL 226 (503)
Q Consensus 172 ~l~~EIe~L~qELq~lR~ele~ekk~~~-------------------------el~eqlqemEk~L~sm~rEIekLraEL 226 (503)
..+..|+.|.+||.+++.+|+..+.... .....+.++.+....-..|..+|++||
T Consensus 106 s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~ekynkeveerkrle~e~ 185 (307)
T PF10481_consen 106 SCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQEKYNKEVEERKRLEAEV 185 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhhhHHHHHHHHHHHHHHHhhHHHHH
Confidence 3445566666666666666555443321 122345566666655566666777777
Q ss_pred Hhccc
Q 010712 227 MNAPN 231 (503)
Q Consensus 227 ekle~ 231 (503)
..|..
T Consensus 186 k~lq~ 190 (307)
T PF10481_consen 186 KALQA 190 (307)
T ss_pred HHHhc
Confidence 76654
No 130
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=98.10 E-value=0.00034 Score=64.57 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010712 105 ELQMRNLTEKIAKMEAE 121 (503)
Q Consensus 105 E~el~eL~eki~kLEaE 121 (503)
+.+|..|..++..++.+
T Consensus 34 E~EI~sL~~K~~~lE~e 50 (143)
T PF12718_consen 34 EQEITSLQKKNQQLEEE 50 (143)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 131
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.0005 Score=77.22 Aligned_cols=49 Identities=18% Similarity=0.053 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI 97 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL 97 (503)
+..++.++.+.+-++.+......+..+++.+++....++.+.+.|+.++
T Consensus 646 ~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~v 694 (970)
T KOG0946|consen 646 QLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEV 694 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555555555555555555444
No 132
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=98.09 E-value=0.0013 Score=64.32 Aligned_cols=51 Identities=22% Similarity=0.252 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG 99 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~ 99 (503)
..|++.|......|..+.....++......|+.++..+..++..+..+...
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~ 76 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAEL 76 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888888777777777777777777777888777777777766543
No 133
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=98.08 E-value=0.0012 Score=72.68 Aligned_cols=97 Identities=21% Similarity=0.216 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hh---hH-------HHHHHHHHHHHHHHHHHhhHHHHH
Q 010712 128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV--QQ---IP-------ALLSELESLRQEYHHCRGTYEYEK 195 (503)
Q Consensus 128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~el--qq---i~-------~l~~EIe~L~qELq~lR~ele~ek 195 (503)
..+|+..+-.+|...+..+..|+.++..|..++....... .+ +. ....+|..|..++++++..+.
T Consensus 233 k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~--- 309 (629)
T KOG0963|consen 233 KAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLV--- 309 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---
Confidence 3355666777788888888888888888888876443322 21 12 223345555555555444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 196 KFYNDHLESLQVMEKNYITMATEVEKLRAELM 227 (503)
Q Consensus 196 k~~~el~eqlqemEk~L~sm~rEIekLraELe 227 (503)
+..+.+..+++++++++.+...+|++|+.+|.
T Consensus 310 ~e~e~~~~qI~~le~~l~~~~~~leel~~kL~ 341 (629)
T KOG0963|consen 310 EEREKHKAQISALEKELKAKISELEELKEKLN 341 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23455566777777777777777777777664
No 134
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=98.08 E-value=0.00014 Score=82.99 Aligned_cols=116 Identities=23% Similarity=0.341 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccch---HHHHHHHHHHHHHHHHHHHHHH---
Q 010712 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMK---SERELQMRNLTEKIAKMEAELK--- 123 (503)
Q Consensus 50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lk---ae~E~el~eL~eki~kLEaEL~--- 123 (503)
.++++++.+..+...|+..+.++..+++.++.+|...+..|..|+.+|..++ ...+.+++...+....++..+.
T Consensus 593 el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e 672 (769)
T PF05911_consen 593 ELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLE 672 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3455555555555555555555555555555555555555555555554322 1333333333333333333221
Q ss_pred -HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 124 -TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT 165 (503)
Q Consensus 124 -~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~ 165 (503)
++..+...+..|..||++-+..-.++..+..+|+.+|.+...
T Consensus 673 ~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~ 715 (769)
T PF05911_consen 673 AEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKK 715 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhc
Confidence 122344444444444444444444455555555555554443
No 135
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=98.08 E-value=0.0037 Score=61.09 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHH
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSER 104 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~ 104 (503)
..++..|.....++...+.++..|...+..+.........-+..++..|.++..+.
T Consensus 5 ~d~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~ 60 (207)
T PF05010_consen 5 KDLDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEK 60 (207)
T ss_pred HhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666555555666666666665555555544455544444444433
No 136
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=98.07 E-value=0.0028 Score=60.80 Aligned_cols=51 Identities=22% Similarity=0.299 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccch---HHHHHHHHHHHHHHHHHHHHHHH
Q 010712 74 ATHGTLRQELAAAQHELQILHGQIGGMK---SERELQMRNLTEKIAKMEAELKT 124 (503)
Q Consensus 74 ~e~~~LrqeLa~lq~EL~~L~~qL~~lk---ae~E~el~eL~eki~kLEaEL~~ 124 (503)
..+..|+.+|...+.++..+...+.... .+.+..++.|..+..+++..+..
T Consensus 11 rri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~ 64 (205)
T KOG1003|consen 11 RRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEA 64 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHH
Confidence 3333344444444444444433333222 23444555555555555554443
No 137
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=98.05 E-value=0.0013 Score=70.13 Aligned_cols=47 Identities=17% Similarity=0.180 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010712 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG 98 (503)
Q Consensus 51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~ 98 (503)
||+. -.+..-|++|...|++-+..|..|+-.-..+...++.|+..+.
T Consensus 309 leed-maLNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~ 355 (527)
T PF15066_consen 309 LEED-MALNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKIT 355 (527)
T ss_pred cHHH-HHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhh
Confidence 4444 3455667788888888777777776666666666666666553
No 138
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=98.05 E-value=0.002 Score=66.78 Aligned_cols=60 Identities=15% Similarity=0.220 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712 172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (503)
Q Consensus 172 ~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~ 231 (503)
..+.||+.+...+.+++.+....+...+.....+-+|-.+...+..+++.++..+++|++
T Consensus 241 tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~ 300 (309)
T PF09728_consen 241 TFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEK 300 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666655555555555555556666655666666666666666654
No 139
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=98.05 E-value=0.0012 Score=64.33 Aligned_cols=18 Identities=11% Similarity=0.239 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHhcccc
Q 010712 215 MATEVEKLRAELMNAPNV 232 (503)
Q Consensus 215 m~rEIekLraELekle~e 232 (503)
+++.|..|...|++.+..
T Consensus 148 LEkKl~~l~~~lE~keaq 165 (201)
T PF13851_consen 148 LEKKLQALSEQLEKKEAQ 165 (201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444443333
No 140
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.05 E-value=0.0006 Score=77.16 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQE 82 (503)
Q Consensus 50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~Lrqe 82 (503)
.++.+|..+..+++.+..+...+..+++.++.+
T Consensus 213 ~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~ 245 (650)
T TIGR03185 213 ALEAELKEQSEKYEDLAQEIAHLRNELEEAQRS 245 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333333333333333
No 141
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=98.05 E-value=0.0017 Score=70.35 Aligned_cols=27 Identities=4% Similarity=0.148 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712 207 VMEKNYITMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 207 emEk~L~sm~rEIekLraELekle~el 233 (503)
+...++...+.++..++++|+.++..+
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l 314 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDS 314 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566666666655554444
No 142
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=98.04 E-value=0.0016 Score=65.53 Aligned_cols=111 Identities=12% Similarity=0.132 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHH-HHhHHH
Q 010712 55 IASQHVEMQKLATENQRLAATHGTLRQELAA----AQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK-TAEPVK 129 (503)
Q Consensus 55 Ie~~~~EIq~Le~enqrLa~e~~~LrqeLa~----lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~-~le~Lk 129 (503)
|..+..-...|...|..|..+|....+.-.. +=++-+.+...+..+......++..++..+.+.++.+. .+..|.
T Consensus 8 l~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq 87 (258)
T PF15397_consen 8 LQELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQ 87 (258)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4444444455666666666666555332111 11111122222222222222334444444444333222 344455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Q 010712 130 LEFQKSKTEAQNLVVAREELIA-----------KVHQLTQDLQRAHT 165 (503)
Q Consensus 130 ~ELeqLraELqqL~~erqeLe~-----------qiq~L~~ELqrlk~ 165 (503)
.+++++.++|++.+.++.-|.. +|..|..+|+.++.
T Consensus 88 ~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~ 134 (258)
T PF15397_consen 88 QQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKD 134 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555444433 44555555554443
No 143
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=98.03 E-value=0.00052 Score=74.87 Aligned_cols=19 Identities=5% Similarity=0.109 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 010712 210 KNYITMATEVEKLRAELMN 228 (503)
Q Consensus 210 k~L~sm~rEIekLraELek 228 (503)
.++..|+++++..+...+.
T Consensus 355 ~el~~L~Re~~~~~~~Y~~ 373 (498)
T TIGR03007 355 AELTQLNRDYEVNKSNYEQ 373 (498)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333
No 144
>PF13514 AAA_27: AAA domain
Probab=98.02 E-value=0.0011 Score=79.23 Aligned_cols=37 Identities=19% Similarity=0.300 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712 61 EMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI 97 (503)
Q Consensus 61 EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL 97 (503)
++..+..+...+...+..+++++.....++..|-..+
T Consensus 737 ~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l 773 (1111)
T PF13514_consen 737 ELREALAEIRELRRRIEQMEADLAAFEEQVAALAERL 773 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444555555555555555555555555555444
No 145
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=98.00 E-value=0.0031 Score=62.76 Aligned_cols=50 Identities=12% Similarity=0.020 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 226 (503)
Q Consensus 177 Ie~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraEL 226 (503)
.++|-.-++.|..+.+..+.++--+.+++++.+++++.+++.++.+..-+
T Consensus 259 q~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav 308 (330)
T KOG2991|consen 259 QEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAV 308 (330)
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444444455555555555555555555555555444443
No 146
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.99 E-value=1.3e-06 Score=99.38 Aligned_cols=81 Identities=16% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 148 ELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 227 (503)
Q Consensus 148 eLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELe 227 (503)
.+...+..|+.++.+...-..++..++.+|.+|+.++......++.+...+..+.+++..++.+...+..+++.|+..++
T Consensus 343 ~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~e 422 (713)
T PF05622_consen 343 VLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETNE 422 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444433333334444444444444444444444443333444444444444444444444444444333
Q ss_pred h
Q 010712 228 N 228 (503)
Q Consensus 228 k 228 (503)
.
T Consensus 423 e 423 (713)
T PF05622_consen 423 E 423 (713)
T ss_dssp -
T ss_pred H
Confidence 3
No 147
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=97.99 E-value=0.0054 Score=63.49 Aligned_cols=83 Identities=16% Similarity=0.272 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHHHHHHhh--------------HHHHHHHHHHHHHHHHH
Q 010712 146 REELIAKVHQLTQDLQRAHTDVQQI----PALLSELESLRQEYHHCRGT--------------YEYEKKFYNDHLESLQV 207 (503)
Q Consensus 146 rqeLe~qiq~L~~ELqrlk~elqqi----~~l~~EIe~L~qELq~lR~e--------------le~ekk~~~el~eqlqe 207 (503)
+.+|..++..+..++..++.+++.+ +++..|.+..+..+++|-.+ |+.+--.+-.+.++++.
T Consensus 128 re~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q 207 (319)
T PF09789_consen 128 REDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQ 207 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443322 23344444444444444444 33344455567778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 010712 208 MEKNYITMATEVEKLRAELMN 228 (503)
Q Consensus 208 mEk~L~sm~rEIekLraELek 228 (503)
++++...+...|.|.+.-|+.
T Consensus 208 ~qeE~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 208 LQEEKELLKQTINKYKSALER 228 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888888888883
No 148
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=97.98 E-value=0.0013 Score=63.66 Aligned_cols=56 Identities=29% Similarity=0.506 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 010712 171 PALLSELESLRQEYHHCRG-------TYEYEKKFYNDHLESL----QVMEKNYITMATEVEKLRAEL 226 (503)
Q Consensus 171 ~~l~~EIe~L~qELq~lR~-------ele~ekk~~~el~eql----qemEk~L~sm~rEIekLraEL 226 (503)
..+..+++.|+.||...|. .|+.++..-.+.++++ +.+..+.+.|-+....|..+|
T Consensus 134 ~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~l 200 (202)
T PF06818_consen 134 GSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALEREL 200 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555554444 3444433333333332 234444555666666666554
No 149
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=97.98 E-value=0.0036 Score=63.13 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=9.4
Q ss_pred CChHHHHHHHHHHHHHHHHHH
Q 010712 46 PPPEVMEQKIASQHVEMQKLA 66 (503)
Q Consensus 46 p~p~~LEqeIe~~~~EIq~Le 66 (503)
|+|..|+..|+....+++...
T Consensus 17 ~~~~~l~~~~e~~~~~L~~~~ 37 (264)
T PF06008_consen 17 PAPYKLLSSIEDLTNQLRSYR 37 (264)
T ss_pred hhHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444433
No 150
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=97.98 E-value=0.0024 Score=68.05 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 48 PEVMEQKIASQHVEMQKLATENQRL 72 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le~enqrL 72 (503)
.+.+++++..+..||..|..+++++
T Consensus 89 ~Es~~~kl~RL~~Ev~EL~eEl~~~ 113 (388)
T PF04912_consen 89 KESPEQKLQRLRREVEELKEELEKR 113 (388)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999998888776
No 151
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=97.98 E-value=0.0027 Score=64.02 Aligned_cols=18 Identities=11% Similarity=0.340 Sum_probs=7.5
Q ss_pred CCCCCChHHHHHHHHHHH
Q 010712 42 FDMMPPPEVMEQKIASQH 59 (503)
Q Consensus 42 ~~~~p~p~~LEqeIe~~~ 59 (503)
..++-.++.+-+++....
T Consensus 20 ~~l~~~~e~~~~~L~~~~ 37 (264)
T PF06008_consen 20 YKLLSSIEDLTNQLRSYR 37 (264)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344444444444444333
No 152
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=97.98 E-value=0.00062 Score=73.69 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712 178 ESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229 (503)
Q Consensus 178 e~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekl 229 (503)
+.|+..++.++..+..+++....+.+.+..+.+.-.....+++.++.+|..+
T Consensus 378 S~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~ei 429 (570)
T COG4477 378 SELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEI 429 (570)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555554444444455555554443
No 153
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=97.97 E-value=0.0012 Score=72.66 Aligned_cols=21 Identities=10% Similarity=0.056 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010712 130 LEFQKSKTEAQNLVVAREELI 150 (503)
Q Consensus 130 ~ELeqLraELqqL~~erqeLe 150 (503)
..++.++.++...+.+..+..
T Consensus 221 ~~l~l~~~~~~~~~~el~~Yk 241 (511)
T PF09787_consen 221 EQLELLKAEGESEEAELQQYK 241 (511)
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 334444444444444444443
No 154
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.0036 Score=70.50 Aligned_cols=65 Identities=17% Similarity=0.211 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 010712 170 IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDR 234 (503)
Q Consensus 170 i~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~ 234 (503)
+.++...++.|+.++++....++.++..+.+....+..+..+...++.|+++|+.+|+.+.+...
T Consensus 561 ~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 561 AQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 56677778888888888888888888888888888888888888888888888888888776553
No 155
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.96 E-value=0.0019 Score=71.52 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 48 PEVMEQKIASQHVEMQKLATENQRLAATHG 77 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~ 77 (503)
++.||.++..+..|-..|..+...|..++.
T Consensus 411 va~lEkKvqa~~kERDalr~e~kslk~ela 440 (961)
T KOG4673|consen 411 VATLEKKVQALTKERDALRREQKSLKKELA 440 (961)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 467888888888777777777666655553
No 156
>PF13166 AAA_13: AAA domain
Probab=97.95 E-value=0.00097 Score=75.80 Aligned_cols=104 Identities=13% Similarity=0.145 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 010712 131 EFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQ--IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVM 208 (503)
Q Consensus 131 ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqq--i~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqem 208 (503)
.+..+...++++...+.++...++.+..++..++..+.. +..+...|+.+..++..++.+++.+++.+..+...+..+
T Consensus 364 ~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 443 (712)
T PF13166_consen 364 DIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLHLIAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKI 443 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555544443322 223334444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccc
Q 010712 209 EKNYITMATEVEKLRAELMNAPNVDR 234 (503)
Q Consensus 209 Ek~L~sm~rEIekLraELekle~el~ 234 (503)
++.+..++.++.....-++.+..+|+
T Consensus 444 ~~~i~~l~~~~~~~~~~~~~iN~~L~ 469 (712)
T PF13166_consen 444 EKEIKELEAQLKNTEPAADRINEELK 469 (712)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44444444444333333344444443
No 157
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=97.95 E-value=0.0012 Score=75.86 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccc
Q 010712 75 THGTLRQELAAAQHELQILHGQIGGM 100 (503)
Q Consensus 75 e~~~LrqeLa~lq~EL~~L~~qL~~l 100 (503)
..+-|.++|..++++++..+.++.+.
T Consensus 195 a~~~L~~ql~~l~~~l~~aE~~l~~f 220 (754)
T TIGR01005 195 AADFLAPEIADLSKQSRDAEAEVAAY 220 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555554443
No 158
>PF13514 AAA_27: AAA domain
Probab=97.94 E-value=0.0029 Score=75.83 Aligned_cols=46 Identities=20% Similarity=0.214 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 010712 156 LTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDH 201 (503)
Q Consensus 156 L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el 201 (503)
|...+.+.+...+++..+..+|+.++.+++.++.+++..+..+..+
T Consensus 789 L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L 834 (1111)
T PF13514_consen 789 LRARLEEAREAQEERERLQEQLEELEEELEQAEEELEELEAELAEL 834 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444455555555555555544444444433
No 159
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=97.94 E-value=0.0013 Score=70.50 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 010712 72 LAATHGTLRQELAAAQHELQILHGQ 96 (503)
Q Consensus 72 La~e~~~LrqeLa~lq~EL~~L~~q 96 (503)
|..++..++++|..++.+|+..+.+
T Consensus 176 l~~ql~~~~~~l~~ae~~l~~fr~~ 200 (444)
T TIGR03017 176 FVQQIAALREDLARAQSKLSAYQQE 200 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555554443
No 160
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.94 E-value=0.0029 Score=74.33 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712 198 YNDHLESLQVMEKNYITMATEVEKLRAELMNA 229 (503)
Q Consensus 198 ~~el~eqlqemEk~L~sm~rEIekLraELekl 229 (503)
+.++.+.+.++++.+..+.+++++++.++.++
T Consensus 405 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~ 436 (908)
T COG0419 405 LEEIQEELEELEKELEELERELEELEEEIKKL 436 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444433
No 161
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=97.94 E-value=0.0045 Score=64.08 Aligned_cols=69 Identities=23% Similarity=0.270 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc---hHHHHHHHHHHHHHHHHHH
Q 010712 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGM---KSERELQMRNLTEKIAKME 119 (503)
Q Consensus 51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~l---kae~E~el~eL~eki~kLE 119 (503)
.+++|+.+......|..++.++..++..++.....+..+.+.+..++... +..++.-.++|+.....+.
T Consensus 20 ~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lk 91 (309)
T PF09728_consen 20 PEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLK 91 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777777777777777777777666666666666555555432 2233444444444444443
No 162
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=97.94 E-value=0.00062 Score=70.33 Aligned_cols=110 Identities=16% Similarity=0.223 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 010712 57 SQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSK 136 (503)
Q Consensus 57 ~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLr 136 (503)
.+..-+.....+|.+|..++..|+++|..++-++.-|++.+...+...+..- .......-+.-+..++.++.++.+++
T Consensus 69 ~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~--~~~~~~ere~lV~qLEk~~~q~~qLe 146 (319)
T PF09789_consen 69 NLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIG--ARHFPHEREDLVEQLEKLREQIEQLE 146 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccc--ccccchHHHHHHHHHHHHHHHHHHHH
Confidence 3334445566778888888888888888888888888887765443211000 00000122223333445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010712 137 TEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ 168 (503)
Q Consensus 137 aELqqL~~erqeLe~qiq~L~~ELqrlk~elq 168 (503)
.+++.+..+.+++..+++......++|..++.
T Consensus 147 ~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn 178 (319)
T PF09789_consen 147 RDLQSLLDEKEELVTERDAYKCKAHRLNHELN 178 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555544
No 163
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.0066 Score=65.90 Aligned_cols=66 Identities=27% Similarity=0.370 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH----------HHHHHHHHHHHHHHHHHHHHHH
Q 010712 59 HVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS----------ERELQMRNLTEKIAKMEAELKT 124 (503)
Q Consensus 59 ~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lka----------e~E~el~eL~eki~kLEaEL~~ 124 (503)
..||...+.++++|++.+..|+.+|......+..++.+..++.+ .++..++.-.+++.+|+++|.+
T Consensus 330 ~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkk 405 (654)
T KOG4809|consen 330 LEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKK 405 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777788888888888887777777666666666554433 3444445555667777777654
No 164
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=97.93 E-value=0.0027 Score=66.36 Aligned_cols=28 Identities=29% Similarity=0.312 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712 202 LESLQVMEKNYITMATEVEKLRAELMNA 229 (503)
Q Consensus 202 ~eqlqemEk~L~sm~rEIekLraELekl 229 (503)
+..+...|.+|+=+++||..|+.||..+
T Consensus 511 EVLLRVKEsEiQYLKqEissLkDELQta 538 (593)
T KOG4807|consen 511 EVLLRVKESEIQYLKQEISSLKDELQTA 538 (593)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555555443
No 165
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=97.92 E-value=0.00085 Score=75.46 Aligned_cols=18 Identities=11% Similarity=0.154 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 010712 48 PEVMEQKIASQHVEMQKL 65 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~L 65 (503)
...||.+|+.+..||-+.
T Consensus 431 ~~~Le~elekLk~eilKA 448 (762)
T PLN03229 431 VRELEGEVEKLKEQILKA 448 (762)
T ss_pred CccHHHHHHHHHHHHHhc
Confidence 456788888888777654
No 166
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=97.91 E-value=0.00026 Score=78.37 Aligned_cols=45 Identities=18% Similarity=0.157 Sum_probs=21.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010712 186 HCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 230 (503)
Q Consensus 186 ~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle 230 (503)
.+.++++.+....+.+++++.+|....+++..++++|+.+|+.|+
T Consensus 213 aAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 213 AALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333333344444444444455555555555555555555554443
No 167
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=97.91 E-value=0.0059 Score=58.09 Aligned_cols=169 Identities=17% Similarity=0.211 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 010712 54 KIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQ 133 (503)
Q Consensus 54 eIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELe 133 (503)
-|..+.++|.+|+-+....+..+..|..+....+.-++.....-.....+...+.++|..++...+. +..-|+++|+
T Consensus 5 ALK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEt---RCslLEKQLe 81 (178)
T PF14073_consen 5 ALKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAET---RCSLLEKQLE 81 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3556677777777777666666666655554444333322111111111222223344444444333 3334556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 134 KSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYI 213 (503)
Q Consensus 134 qLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~ 213 (503)
-++.-+.....++..+..+-..|..+-. .+...+..-...++.|..|+.+|...-.....++..+++.+++-+.+..
T Consensus 82 yMRkmv~~ae~er~~~le~q~~l~~e~~---~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqRK 158 (178)
T PF14073_consen 82 YMRKMVESAEKERNAVLEQQVSLQRERQ---QDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQRK 158 (178)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhc---cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666655555544443333322211 1222233344557777777777777766667777777777776666665
Q ss_pred HHHHHHHHHHHHHHh
Q 010712 214 TMATEVEKLRAELMN 228 (503)
Q Consensus 214 sm~rEIekLraELek 228 (503)
-+...-..|...|+.
T Consensus 159 lvQdkAaqLQt~lE~ 173 (178)
T PF14073_consen 159 LVQDKAAQLQTGLET 173 (178)
T ss_pred HHHHHHHHHHhhHHH
Confidence 555555666666553
No 168
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.90 E-value=0.0048 Score=68.76 Aligned_cols=74 Identities=16% Similarity=0.215 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHH
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAEL 122 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL 122 (503)
...+.+++..+....+|......+..+-+.++.++...+++++.....+..++.+++.++.++...+.+++.-+
T Consensus 94 r~~~~~~dr~~~~~~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~ 167 (716)
T KOG4593|consen 94 RNYEAEVDRKHKLLTRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSL 167 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788888777777766667777777777777777766666666666666666655555555555554433
No 169
>PRK11281 hypothetical protein; Provisional
Probab=97.89 E-value=0.0011 Score=78.59 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 194 EKKFYNDHLESLQVMEKNYITMATEVEK 221 (503)
Q Consensus 194 ekk~~~el~eqlqemEk~L~sm~rEIek 221 (503)
.++..+.+..+++.++..++.++..+.+
T Consensus 225 ~~~q~d~~~~~~~~~~~~~~~lq~~in~ 252 (1113)
T PRK11281 225 LQKQRDYLTARIQRLEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 170
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=97.88 E-value=0.0022 Score=71.51 Aligned_cols=43 Identities=16% Similarity=0.054 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILH 94 (503)
Q Consensus 52 EqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~ 94 (503)
.+++..+..+++.+..+++++..+...+.++++.++.+|+.|+
T Consensus 160 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe 202 (563)
T TIGR00634 160 VKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELE 202 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444443
No 171
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=97.88 E-value=0.0043 Score=61.07 Aligned_cols=48 Identities=10% Similarity=0.145 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI 97 (503)
Q Consensus 50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL 97 (503)
.|++-|....+.|..+...+.++......++++++.++..+..+....
T Consensus 28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A 75 (219)
T TIGR02977 28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKA 75 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555666666666666666666666666666666666655543
No 172
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=97.88 E-value=0.0015 Score=59.31 Aligned_cols=93 Identities=16% Similarity=0.226 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 010712 62 MQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQN 141 (503)
Q Consensus 62 Iq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqq 141 (503)
+..|..+...+.........++..++.+|..............+.++..- -..+..+..++.++..++.++..
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~H-------a~~~~~L~~lr~e~~~~~~~~~~ 77 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKH-------AEDIKELQQLREELQELQQEINE 77 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444433333344443322 22333445566666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010712 142 LVVAREELIAKVHQLTQDLQ 161 (503)
Q Consensus 142 L~~erqeLe~qiq~L~~ELq 161 (503)
++..+......+...+....
T Consensus 78 l~~~~~~a~~~l~~~e~sw~ 97 (132)
T PF07926_consen 78 LKAEAESAKAELEESEASWE 97 (132)
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 66666555555555544443
No 173
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.86 E-value=0.0044 Score=72.83 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 010712 191 YEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDR 234 (503)
Q Consensus 191 le~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~ 234 (503)
++.++.........+.++...+..+.+++..+.++|++++.++.
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~ 434 (908)
T COG0419 391 IQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIK 434 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555566666666677777777777777666543
No 174
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=97.86 E-value=0.001 Score=76.05 Aligned_cols=30 Identities=10% Similarity=0.199 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712 204 SLQVMEKNYITMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 204 qlqemEk~L~sm~rEIekLraELekle~el 233 (503)
|.+.+.+.|..+..+|+++-.+|.++++.+
T Consensus 686 Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~~ 715 (717)
T PF10168_consen 686 QKRTIKEILKQQGEEIDELVKQIKNIKKIV 715 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455566666666777777777776665543
No 175
>PRK10698 phage shock protein PspA; Provisional
Probab=97.86 E-value=0.0038 Score=61.73 Aligned_cols=47 Identities=11% Similarity=0.143 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010712 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQ 96 (503)
Q Consensus 50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~q 96 (503)
.|++-|....+.+..+.....++..+...+++++..++.++..+..+
T Consensus 28 ~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~k 74 (222)
T PRK10698 28 LVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEK 74 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555666666666655555544
No 176
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=97.85 E-value=0.0014 Score=73.53 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=27.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 010712 182 QEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRR 235 (503)
Q Consensus 182 qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~~ 235 (503)
.++.-.+.+.+..+..+.+-..+.+++.+- -++.|++.|+.|+++++...+.
T Consensus 1059 ~efAa~eaemdeik~~~~edrakqkei~k~--L~ehelenLrnEieklndkIkd 1110 (1424)
T KOG4572|consen 1059 DEFAAIEAEMDEIKDGKCEDRAKQKEIDKI--LKEHELENLRNEIEKLNDKIKD 1110 (1424)
T ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhc
Confidence 344444444444433333333333333222 3467778888888888777764
No 177
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=97.85 E-value=0.004 Score=60.44 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Q 010712 176 ELESLRQEYHHCRGTYEYEKKFYND 200 (503)
Q Consensus 176 EIe~L~qELq~lR~ele~ekk~~~e 200 (503)
.+..|+.++++|+.+|..++...++
T Consensus 132 ~~~~l~~e~erL~aeL~~er~~~e~ 156 (202)
T PF06818_consen 132 ELGSLRREVERLRAELQRERQRREE 156 (202)
T ss_pred cchhHHHHHHHHHHHHHHHHHhHHH
Confidence 3677888888888887777665543
No 178
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=97.84 E-value=0.0021 Score=69.16 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712 63 QKLATENQRLAATHGTLRQELAAAQHELQILHGQI 97 (503)
Q Consensus 63 q~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL 97 (503)
+.|...|..|..+.+.|.+++.....++..|..++
T Consensus 86 qsllk~nk~Lq~~nesLeEqv~~~~d~vvql~hel 120 (596)
T KOG4360|consen 86 QSLLKANKALQEDNESLEEQVDAPWDRVVQLGHEL 120 (596)
T ss_pred HHHHhhhhhhhhhhhhhHhhhcchHHHHHHhhhhh
Confidence 56777777777777777777766666655555544
No 179
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=97.83 E-value=0.00091 Score=60.00 Aligned_cols=68 Identities=19% Similarity=0.282 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHH
Q 010712 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYE 194 (503)
Q Consensus 127 ~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~e 194 (503)
.|..+|..+..|+..++.++..|+.+.+.+..+|-++..+...+.....++..|+.+++.++..++..
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~ 87 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTL 87 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444455555555555555554444444444445555555555544444333
No 180
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=97.82 E-value=0.0081 Score=57.04 Aligned_cols=30 Identities=7% Similarity=0.027 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712 204 SLQVMEKNYITMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 204 qlqemEk~L~sm~rEIekLraELekle~el 233 (503)
.+....+.+..+.++|..|++.++.++.++
T Consensus 146 Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~i 175 (177)
T PF13870_consen 146 DYDKTKEEVEELRKEIKELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444455555666666666666555443
No 181
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=97.82 E-value=0.0064 Score=57.72 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010712 203 ESLQVMEKNYITMATEVEKLRA 224 (503)
Q Consensus 203 eqlqemEk~L~sm~rEIekLra 224 (503)
+.+.++++.+..+.+.++.+..
T Consensus 152 ~~~~~l~~~i~~l~rk~~~l~~ 173 (177)
T PF13870_consen 152 EEVEELRKEIKELERKVEILEM 173 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 182
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=97.82 E-value=0.00058 Score=79.09 Aligned_cols=12 Identities=25% Similarity=0.390 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 010712 65 LATENQRLAATH 76 (503)
Q Consensus 65 Le~enqrLa~e~ 76 (503)
|+.+-++|..+.
T Consensus 925 le~e~~~l~~dr 936 (1605)
T KOG0260|consen 925 LECEYKKLVRDR 936 (1605)
T ss_pred HHHHHHhhhhhh
Confidence 333334443333
No 183
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=97.82 E-value=0.0015 Score=74.72 Aligned_cols=27 Identities=7% Similarity=0.140 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 200 DHLESLQVMEKNYITMATEVEKLRAEL 226 (503)
Q Consensus 200 el~eqlqemEk~L~sm~rEIekLraEL 226 (503)
.+++-|+++-+++..|-++|+.+++.|
T Consensus 689 ~I~~iL~~~~~~I~~~v~~ik~i~~~~ 715 (717)
T PF10168_consen 689 TIKEILKQQGEEIDELVKQIKNIKKIV 715 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444555555555555555555543
No 184
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=97.82 E-value=0.0051 Score=68.58 Aligned_cols=45 Identities=11% Similarity=0.069 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccch
Q 010712 57 SQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMK 101 (503)
Q Consensus 57 ~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lk 101 (503)
.+..+++.+-.+.+++..++..++.+....+++++.++.++++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe 202 (563)
T TIGR00634 158 EKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELE 202 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555566666666666665543
No 185
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=97.81 E-value=0.0097 Score=70.81 Aligned_cols=77 Identities=12% Similarity=0.198 Sum_probs=48.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhhccc-----------hHHHHHHH
Q 010712 47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQEL-------AAAQHELQILHGQIGGM-----------KSERELQM 108 (503)
Q Consensus 47 ~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeL-------a~lq~EL~~L~~qL~~l-----------kae~E~el 108 (503)
...+||+++.....+++.+..+.+.......++...+ .+++++++.++.++... +...+.+.
T Consensus 103 s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~ 182 (1109)
T PRK10929 103 STDALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAES 182 (1109)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHH
Confidence 3488999999888888888877777666664444444 56666666666655431 11334455
Q ss_pred HHHHHHHHHHHHHHH
Q 010712 109 RNLTEKIAKMEAELK 123 (503)
Q Consensus 109 ~eL~eki~kLEaEL~ 123 (503)
..++.++..++.++.
T Consensus 183 ~~l~~~~~~l~~~l~ 197 (1109)
T PRK10929 183 AALKALVDELELAQL 197 (1109)
T ss_pred HHHHHHHHHHHHHHh
Confidence 556666666665554
No 186
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.0024 Score=71.97 Aligned_cols=29 Identities=10% Similarity=0.285 Sum_probs=11.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 010712 181 RQEYHHCRGTYEYEKKFYNDHLESLQVME 209 (503)
Q Consensus 181 ~qELq~lR~ele~ekk~~~el~eqlqemE 209 (503)
++++..+.++++..+..+.++.+.+..++
T Consensus 854 eq~ls~l~~~~k~~~nli~~ltEk~~sl~ 882 (970)
T KOG0946|consen 854 EQKLSNLQEKIKFGNNLIKELTEKISSLE 882 (970)
T ss_pred HHHHHHHHHHhhhhhhHHHHHhhhhhhHH
Confidence 33333344444444444444444444333
No 187
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=97.80 E-value=0.004 Score=70.27 Aligned_cols=16 Identities=13% Similarity=0.160 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 010712 49 EVMEQKIASQHVEMQK 64 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~ 64 (503)
..|.+.|+.+.+|+..
T Consensus 458 ~~L~e~IeKLk~E~d~ 473 (762)
T PLN03229 458 LALNEMIEKLKKEIDL 473 (762)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3466677777776654
No 188
>PF12815 CTD: Spt5 C-terminal nonapeptide repeat binding Spt4; PDB: 2E70_A.
Probab=97.80 E-value=4.6e-06 Score=74.96 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=0.0
Q ss_pred CCCCC-CCCCCCCCCCCCC
Q 010712 432 GPGYD-LQRGQGYDMRRAP 449 (503)
Q Consensus 432 ~p~~~-~~~~~~~~~~~~p 449 (503)
+|++- ...++++..+.+|
T Consensus 103 TPg~~~~~~TPg~~~~~~p 121 (123)
T PF12815_consen 103 TPGAYNNAPTPGASAYSAP 121 (123)
T ss_dssp -------------------
T ss_pred ccccccccccccccccccc
Confidence 44443 2445554444444
No 189
>PF13166 AAA_13: AAA domain
Probab=97.80 E-value=0.003 Score=71.81 Aligned_cols=104 Identities=11% Similarity=0.110 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 010712 126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH--TDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLE 203 (503)
Q Consensus 126 e~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk--~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~e 203 (503)
..+...+..+...+.+.......+..++..+...+.... .-...+..+..++..+..+++.+..+++.++..+..+..
T Consensus 366 ~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 445 (712)
T PF13166_consen 366 DELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLHLIAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEK 445 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666666665553321 112233444555666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712 204 SLQVMEKNYITMATEVEKLRAELMNA 229 (503)
Q Consensus 204 qlqemEk~L~sm~rEIekLraELekl 229 (503)
++++++.++.....-++.+..+|..+
T Consensus 446 ~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 446 EIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 66666666665566666666666665
No 190
>PRK10869 recombination and repair protein; Provisional
Probab=97.79 E-value=0.0027 Score=70.72 Aligned_cols=28 Identities=7% Similarity=0.112 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 198 YNDHLESLQVMEKNYITMATEVEKLRAE 225 (503)
Q Consensus 198 ~~el~eqlqemEk~L~sm~rEIekLraE 225 (503)
+.++.+++.++.+++..+..+|.+.|.+
T Consensus 343 l~~Le~e~~~l~~~l~~~A~~LS~~R~~ 370 (553)
T PRK10869 343 LETLALAVEKHHQQALETAQKLHQSRQR 370 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555444444444443
No 191
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=97.79 E-value=0.0031 Score=68.57 Aligned_cols=93 Identities=19% Similarity=0.279 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 010712 132 FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKN 211 (503)
Q Consensus 132 LeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~ 211 (503)
|.+|-.+++.+..+..-+..+.+.|...|...+++. ..+..+|..+.+.+.+|+.|++..++.+ ++|+..|-+.
T Consensus 422 I~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek---~~l~eeL~~a~~~i~~LqDEL~TTr~NY---E~QLs~MSEH 495 (518)
T PF10212_consen 422 IEELTSQLQHADSKAVHFYAECRALQKRLESAEKEK---ESLEEELKEANQNISRLQDELETTRRNY---EEQLSMMSEH 495 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHH
Confidence 444444444444444444444444444444333322 2355667777777777777777766666 3467788888
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 010712 212 YITMATEVEKLRAELMNAP 230 (503)
Q Consensus 212 L~sm~rEIekLraELekle 230 (503)
|.+|...|.+-+.+|+.++
T Consensus 496 LasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 496 LASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8888888888888888775
No 192
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.79 E-value=0.012 Score=65.44 Aligned_cols=12 Identities=42% Similarity=0.534 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 010712 216 ATEVEKLRAELM 227 (503)
Q Consensus 216 ~rEIekLraELe 227 (503)
+-.|.+|+.|++
T Consensus 635 eikVn~L~~E~e 646 (786)
T PF05483_consen 635 EIKVNKLQEELE 646 (786)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 193
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=97.78 E-value=0.0021 Score=64.35 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 198 YNDHLESLQVMEKNYITMATEVEKLRA 224 (503)
Q Consensus 198 ~~el~eqlqemEk~L~sm~rEIekLra 224 (503)
++++.+.+..-.++...++.|+..|..
T Consensus 164 ~e~L~ekynkeveerkrle~e~k~lq~ 190 (307)
T PF10481_consen 164 YEELQEKYNKEVEERKRLEAEVKALQA 190 (307)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 334443333333344445555555553
No 194
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=97.78 E-value=0.0033 Score=66.17 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010712 103 ERELQMRNLTEKIAKMEAELKTA 125 (503)
Q Consensus 103 e~E~el~eL~eki~kLEaEL~~l 125 (503)
+.|.-+..|.+++++|++|.+-+
T Consensus 198 EqEalvN~LwKrmdkLe~ekr~L 220 (552)
T KOG2129|consen 198 EQEALVNSLWKRMDKLEQEKRYL 220 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566777777777766543
No 195
>PLN02939 transferase, transferring glycosyl groups
Probab=97.77 E-value=0.004 Score=72.59 Aligned_cols=26 Identities=8% Similarity=0.194 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 67 TENQRLAATHGTLRQELAAAQHELQI 92 (503)
Q Consensus 67 ~enqrLa~e~~~LrqeLa~lq~EL~~ 92 (503)
.+.+++..+.+.|+.++..++.+|..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (977)
T PLN02939 156 EDLEKILTEKEALQGKINILEMRLSE 181 (977)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhh
Confidence 34555666666666665555554444
No 196
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.77 E-value=0.0035 Score=72.54 Aligned_cols=35 Identities=9% Similarity=0.213 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR 162 (503)
Q Consensus 128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqr 162 (503)
.+.+...++.+++++..++..++.....+..++++
T Consensus 315 ~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~ 349 (1141)
T KOG0018|consen 315 AKKDYRALKETIERLEKELKAVEGAKEEFEKEIEE 349 (1141)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555555555543
No 197
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.76 E-value=0.0098 Score=71.00 Aligned_cols=37 Identities=19% Similarity=0.334 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQH 88 (503)
Q Consensus 52 EqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~ 88 (503)
+.++..+..+++.+..+..++..++..+.+.+.....
T Consensus 529 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (1047)
T PRK10246 529 QSRLDALEKEVKKLGEEGAALRGQLDALTKQLQRDES 565 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555444444444444444333333333
No 198
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=97.76 E-value=0.00045 Score=71.59 Aligned_cols=55 Identities=18% Similarity=0.130 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712 177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (503)
Q Consensus 177 Ie~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~ 231 (503)
|..++.|+..+..+.+..-+....+..++.++++++.++...++.+..+|++|++
T Consensus 80 l~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 80 LEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444333444445556666677777778888888888888888765
No 199
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=97.76 E-value=0.01 Score=63.78 Aligned_cols=34 Identities=12% Similarity=0.126 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH
Q 010712 69 NQRLAATHGTLRQELAAAQHELQILHGQIGGMKS 102 (503)
Q Consensus 69 nqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lka 102 (503)
+........-|.++|..++++|...+.++.+.+.
T Consensus 166 ~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~ 199 (444)
T TIGR03017 166 VEPAQKAALWFVQQIAALREDLARAQSKLSAYQQ 199 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556667777777777777777777766543
No 200
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=97.76 E-value=0.0052 Score=60.91 Aligned_cols=48 Identities=23% Similarity=0.275 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQ 96 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~q 96 (503)
..|++.|.....++..+.....++......+..++..++.+...++..
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~ 74 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEK 74 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666666666666666666655555554
No 201
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=97.75 E-value=0.0047 Score=69.50 Aligned_cols=19 Identities=42% Similarity=0.565 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 010712 79 LRQELAAAQHELQILHGQI 97 (503)
Q Consensus 79 LrqeLa~lq~EL~~L~~qL 97 (503)
|+.|.+.++.+|+.|..+|
T Consensus 392 lrsENaqLrRrLrilnqql 410 (861)
T PF15254_consen 392 LRSENAQLRRRLRILNQQL 410 (861)
T ss_pred hhhhhHHHHHHHHHHHHHH
Confidence 3333333444444444333
No 202
>PRK11281 hypothetical protein; Provisional
Probab=97.75 E-value=0.0074 Score=71.92 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhhcc
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQE-------LAAAQHELQILHGQIGG 99 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~Lrqe-------La~lq~EL~~L~~qL~~ 99 (503)
..||+++....++++..+.++..+..++..++.+ +.+.+.+++.++.++..
T Consensus 124 ~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~ 181 (1113)
T PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKG 181 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5588888888888888887777777766666554 44455555555555543
No 203
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.74 E-value=0.0097 Score=66.20 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 191 YEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 226 (503)
Q Consensus 191 le~ekk~~~el~eqlqemEk~L~sm~rEIekLraEL 226 (503)
+...++....+.+++..+++.-..+..+++.++.++
T Consensus 522 i~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel 557 (786)
T PF05483_consen 522 INNSKKQEEKMLKQIENLEETNTQLRNELESVKEEL 557 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 204
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=97.74 E-value=0.014 Score=62.22 Aligned_cols=38 Identities=26% Similarity=0.404 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAA 86 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~l 86 (503)
..|+..|.....||..|.....+|+..++.++.-|...
T Consensus 60 ~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl~i~ 97 (384)
T PF03148_consen 60 NELERELEELDEEIDLLEEEKRRLEKALEALRKPLSIA 97 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 34566666666666666666666666666655444433
No 205
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=97.73 E-value=0.0016 Score=70.15 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010712 63 QKLATENQRLAATHGTLRQELAAAQHELQILHGQ 96 (503)
Q Consensus 63 q~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~q 96 (503)
..|..+|+-|.+++.....++..+++++.+....
T Consensus 93 k~Lq~~nesLeEqv~~~~d~vvql~hels~k~el 126 (596)
T KOG4360|consen 93 KALQEDNESLEEQVDAPWDRVVQLGHELSRKDEL 126 (596)
T ss_pred hhhhhhhhhhHhhhcchHHHHHHhhhhhhhhhhh
Confidence 4455666666666666556666665555544433
No 206
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.73 E-value=0.0094 Score=63.13 Aligned_cols=11 Identities=9% Similarity=0.069 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 010712 59 HVEMQKLATEN 69 (503)
Q Consensus 59 ~~EIq~Le~en 69 (503)
..++..|+.+.
T Consensus 221 ~~kv~flerkv 231 (502)
T KOG0982|consen 221 ERKVRFLERKV 231 (502)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 207
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=97.72 E-value=0.0017 Score=58.25 Aligned_cols=84 Identities=18% Similarity=0.218 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 010712 128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQV 207 (503)
Q Consensus 128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqe 207 (503)
+..|+..++.++..+..++.++..+|-.|..+.+.++...+++..++.++.+|+..++.+-.-+-.-...+++++.++.+
T Consensus 28 ~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~D 107 (120)
T PF12325_consen 28 LEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQD 107 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 55566677777788888888888888888888888777777888888888888888877776665555555566655555
Q ss_pred HHHH
Q 010712 208 MEKN 211 (503)
Q Consensus 208 mEk~ 211 (503)
+.+-
T Consensus 108 lK~m 111 (120)
T PF12325_consen 108 LKEM 111 (120)
T ss_pred HHHH
Confidence 5443
No 208
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=97.69 E-value=0.0011 Score=75.77 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 010712 333 PTKGPSYDPAKGPGYDPTKGP 353 (503)
Q Consensus 333 ~s~~~~y~~~~~~~y~~~~~p 353 (503)
.+++|+|++++.|.+|-+|+|
T Consensus 779 ~s~tp~~~~~~Tp~~dG~rTP 799 (1024)
T KOG1999|consen 779 GSRTPARDGGATPSHDGSRTP 799 (1024)
T ss_pred cccCccccCCCCcCCCCCcCC
Confidence 344444444444444444444
No 209
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=97.68 E-value=0.0096 Score=62.41 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhccc
Q 010712 175 SELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYI----TMATEVEKLRAELMNAPN 231 (503)
Q Consensus 175 ~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~----sm~rEIekLraELekle~ 231 (503)
.||.=|++||..|+.+|+...+.........+++-.+|. +...+|..|+..|.....
T Consensus 519 sEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYtELSiaKakadcdIsrLKEqLkaAte 579 (593)
T KOG4807|consen 519 SEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELSIAKAKADCDISRLKEQLKAATE 579 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHhhhccHHHHHHHHHHHHH
Confidence 445555666666666555554444443444444443332 345667777776655443
No 210
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=97.68 E-value=0.0033 Score=74.50 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 010712 170 IPALLSELESLRQEYHHCRGTYEYEKK 196 (503)
Q Consensus 170 i~~l~~EIe~L~qELq~lR~ele~ekk 196 (503)
+..+..+|.+|+.++..+..+++.++.
T Consensus 880 ~~qle~~~~~l~e~~~~~~s~~~e~~~ 906 (1294)
T KOG0962|consen 880 LQQLEEDIEELSEEITRLDSKVKELLE 906 (1294)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHh
Confidence 334444455555555444444444433
No 211
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=97.67 E-value=0.0062 Score=58.49 Aligned_cols=114 Identities=21% Similarity=0.240 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhccchH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010712 54 KIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHG-QIGGMKS-ERELQMRNLTEKIAKMEAELKTAEPVKLE 131 (503)
Q Consensus 54 eIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~-qL~~lka-e~E~el~eL~eki~kLEaEL~~le~Lk~E 131 (503)
+|.....+.++...-.++|...+...++.+..+...+..-.. ....... ..+....+|.+.+..|++|..+.+.|..-
T Consensus 3 rl~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qv 82 (182)
T PF15035_consen 3 RLDAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQV 82 (182)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHH
Confidence 345555555555555566666666666666655555522100 0000000 01112345666777777777777776555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010712 132 FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV 167 (503)
Q Consensus 132 LeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~el 167 (503)
...|+.+|++....-+.|..+++.|+.++.++..++
T Consensus 83 N~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL 118 (182)
T PF15035_consen 83 NALLREQLEQARKANEALQEDLQKLTQDWERLRDEL 118 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666655555554443
No 212
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=97.67 E-value=0.02 Score=61.31 Aligned_cols=28 Identities=21% Similarity=0.176 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 55 IASQHVEMQKLATENQRLAATHGTLRQE 82 (503)
Q Consensus 55 Ie~~~~EIq~Le~enqrLa~e~~~Lrqe 82 (503)
-..++..|+.|.-.|--|+..+.+|+-+
T Consensus 326 n~kQq~~IqdLq~sN~yLe~kvkeLQ~k 353 (527)
T PF15066_consen 326 NRKQQNRIQDLQCSNLYLEKKVKELQMK 353 (527)
T ss_pred hHHHHHHHHHhhhccHHHHHHHHHHHHH
Confidence 3445556666766666677666666443
No 213
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=97.66 E-value=0.0045 Score=73.56 Aligned_cols=15 Identities=13% Similarity=0.337 Sum_probs=9.3
Q ss_pred CCChHHHHHHHHHHH
Q 010712 45 MPPPEVMEQKIASQH 59 (503)
Q Consensus 45 ~p~p~~LEqeIe~~~ 59 (503)
+|.-+.++++|+.+.
T Consensus 22 ~p~~~~iq~~l~~~~ 36 (1109)
T PRK10929 22 APDEKQITQELEQAK 36 (1109)
T ss_pred CCCHHHHHHHHHHhh
Confidence 356566777776544
No 214
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=97.65 E-value=0.0061 Score=56.36 Aligned_cols=118 Identities=16% Similarity=0.250 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 010712 103 ERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQ 182 (503)
Q Consensus 103 e~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~q 182 (503)
....-+.-|.+.|...+.++...+.|..++..+..++..+....+.|+.++..++.++..++.+... +..++..+..
T Consensus 32 ~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~---l~~~~~~~~~ 108 (151)
T PF11559_consen 32 NDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQ---LQKQLKSLEA 108 (151)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3344555566666666666667777777777777777777777777777777776666544443322 3333333333
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 183 EYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 226 (503)
Q Consensus 183 ELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraEL 226 (503)
.+...+.++..++..+.. .......++...++||++|+..|
T Consensus 109 ~~k~~kee~~klk~~~~~---~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 109 KLKQEKEELQKLKNQLQQ---RKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333332222222 22234444555566666665554
No 215
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=97.65 E-value=0.018 Score=66.18 Aligned_cols=53 Identities=21% Similarity=0.206 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 226 (503)
Q Consensus 174 ~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraEL 226 (503)
+-|+-.+..||+-.-.+.++..+..+...++.-+-.+++..|+.|..+|+.-+
T Consensus 154 kye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~ 206 (769)
T PF05911_consen 154 KYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALV 206 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444333334444444455555555555566666666666666544
No 216
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=97.65 E-value=0.013 Score=63.83 Aligned_cols=39 Identities=10% Similarity=0.218 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAA 86 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~l 86 (503)
+..+|+.|+..+..|+.+..++..|..+-+.-..++..+
T Consensus 106 i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~ 144 (570)
T COG4477 106 IDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHV 144 (570)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344555555555555555555554444333333333333
No 217
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=97.64 E-value=0.018 Score=59.70 Aligned_cols=45 Identities=18% Similarity=0.227 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 176 ELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 227 (503)
Q Consensus 176 EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELe 227 (503)
.|+++..|.+.||.+++.+ ++..+.+.++++++.+-+..|++.+.
T Consensus 246 ~i~EfdiEre~LRAel~re-------e~r~K~lKeEmeSLkeiVkdlEA~hQ 290 (561)
T KOG1103|consen 246 LIEEFDIEREFLRAELERE-------EKRQKMLKEEMESLKEIVKDLEADHQ 290 (561)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 3444444444445444443 33334444455555555555555544
No 218
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=97.63 E-value=0.022 Score=63.72 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=19.1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 010712 44 MMPPPEVMEQKIASQHVEMQKLATENQ 70 (503)
Q Consensus 44 ~~p~p~~LEqeIe~~~~EIq~Le~enq 70 (503)
.+|....|.-++..++.|-.+|.++++
T Consensus 469 ~pp~~~dL~~ELqqLReERdRl~aeLq 495 (739)
T PF07111_consen 469 SPPSVTDLSLELQQLREERDRLDAELQ 495 (739)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 356667787777777777777777664
No 219
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.013 Score=62.48 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 55 IASQHVEMQKLATENQRLAATHGTLRQE 82 (503)
Q Consensus 55 Ie~~~~EIq~Le~enqrLa~e~~~Lrqe 82 (503)
++....+...|.++.......+++|+++
T Consensus 236 l~eq~eeneel~ae~kqh~v~~~ales~ 263 (521)
T KOG1937|consen 236 LTEQNEENEELQAEYKQHLVEYKALESK 263 (521)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444444555555555555555444
No 220
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=97.62 E-value=0.012 Score=54.86 Aligned_cols=85 Identities=14% Similarity=0.129 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Q 010712 149 LIAKVHQLTQDLQRAHT--DVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESL-----QVMEKNYITMATEVEK 221 (503)
Q Consensus 149 Le~qiq~L~~ELqrlk~--elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eql-----qemEk~L~sm~rEIek 221 (503)
+...+...+..|..... ....+..+..+++.++.++......++.+......+.... ..+...++.+......
T Consensus 118 l~~wl~~~e~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~ 197 (213)
T cd00176 118 LEQWLEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGHPDADEEIEEKLEELNERWEE 197 (213)
T ss_pred HHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 45555555544432111 1233444455555555555555555555544444443321 3345555555665666
Q ss_pred HHHHHHhccccc
Q 010712 222 LRAELMNAPNVD 233 (503)
Q Consensus 222 LraELekle~el 233 (503)
+...+....+.|
T Consensus 198 l~~~~~~~~~~L 209 (213)
T cd00176 198 LLELAEERQKKL 209 (213)
T ss_pred HHHHHHHHHHHH
Confidence 655555544443
No 221
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=97.61 E-value=0.056 Score=54.07 Aligned_cols=11 Identities=27% Similarity=0.468 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 010712 216 ATEVEKLRAEL 226 (503)
Q Consensus 216 ~rEIekLraEL 226 (503)
..||..++..|
T Consensus 203 ~~Ei~~lk~~l 213 (247)
T PF06705_consen 203 LEEIAALKNAL 213 (247)
T ss_pred HHHHHHHHHHH
Confidence 33444443333
No 222
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=97.61 E-value=0.0093 Score=65.83 Aligned_cols=34 Identities=29% Similarity=0.263 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQD 159 (503)
Q Consensus 126 e~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~E 159 (503)
+.|+.|.+.++.+++.+..++.++..+++.++.+
T Consensus 277 ~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~ 310 (511)
T PF09787_consen 277 EELKQERDHLQEEIQLLERQIEQLRAELQDLEAQ 310 (511)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433333
No 223
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.59 E-value=0.024 Score=67.82 Aligned_cols=41 Identities=15% Similarity=0.138 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHE 89 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~E 89 (503)
..++++++.+...+..+..+...+...+..+...+..+...
T Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (1047)
T PRK10246 533 DALEKEVKKLGEEGAALRGQLDALTKQLQRDESEAQSLRQE 573 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666665555555554444444444444443333333
No 224
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.58 E-value=0.063 Score=51.33 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHH
Q 010712 169 QIPALLSELESLRQEYHHCRGTYEYEK 195 (503)
Q Consensus 169 qi~~l~~EIe~L~qELq~lR~ele~ek 195 (503)
++..++.+|..++.+++.++..++...
T Consensus 146 ki~~l~~~i~~~e~~~~~~~~~~~~i~ 172 (218)
T cd07596 146 KVEELEEELEEAESALEEARKRYEEIS 172 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555544443
No 225
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=97.58 E-value=0.0053 Score=69.04 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010712 72 LAATHGTLRQELAAAQHELQI 92 (503)
Q Consensus 72 La~e~~~LrqeLa~lq~EL~~ 92 (503)
|..+...|+++|..++++|+.
T Consensus 392 lrsENaqLrRrLrilnqqlre 412 (861)
T PF15254_consen 392 LRSENAQLRRRLRILNQQLRE 412 (861)
T ss_pred hhhhhHHHHHHHHHHHHHHHH
Confidence 334444555555555554444
No 226
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=97.57 E-value=0.0029 Score=66.75 Aligned_cols=20 Identities=5% Similarity=0.340 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010712 207 VMEKNYITMATEVEKLRAEL 226 (503)
Q Consensus 207 emEk~L~sm~rEIekLraEL 226 (503)
.+.+.+.+|..||..|.-.+
T Consensus 332 ~IKqAl~kLk~EI~qMdvrI 351 (359)
T PF10498_consen 332 KIKQALTKLKQEIKQMDVRI 351 (359)
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 33334444444444444333
No 227
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=97.57 E-value=0.0011 Score=64.01 Aligned_cols=35 Identities=11% Similarity=0.009 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 010712 177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKN 211 (503)
Q Consensus 177 Ie~L~qELq~lR~ele~ekk~~~el~eqlqemEk~ 211 (503)
++.++.|+..+..++..+++++..++++.+++.+.
T Consensus 146 ~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 146 NEILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443333
No 228
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=97.57 E-value=0.085 Score=52.76 Aligned_cols=7 Identities=0% Similarity=0.226 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 010712 53 QKIASQH 59 (503)
Q Consensus 53 qeIe~~~ 59 (503)
+++....
T Consensus 12 e~~~~f~ 18 (247)
T PF06705_consen 12 ERFSGFE 18 (247)
T ss_pred HHHHHHH
Confidence 3333333
No 229
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.56 E-value=0.0065 Score=67.11 Aligned_cols=28 Identities=14% Similarity=0.036 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 60 VEMQKLATENQRLAATHGTLRQELAAAQ 87 (503)
Q Consensus 60 ~EIq~Le~enqrLa~e~~~LrqeLa~lq 87 (503)
...+.+..+++++.....++.++++-++
T Consensus 164 ~~w~~~~~~l~~~~~~~~e~~~~~d~L~ 191 (557)
T COG0497 164 QAWKQARRELEDLQEKERERAQRADLLQ 191 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444443333333333333
No 230
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.012 Score=62.84 Aligned_cols=29 Identities=14% Similarity=0.159 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712 205 LQVMEKNYITMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 205 lqemEk~L~sm~rEIekLraELekle~el 233 (503)
+...=.++..|-.+--.+++++..+++.+
T Consensus 457 iH~nc~ei~E~i~~tg~~~revrdlE~qI 485 (521)
T KOG1937|consen 457 IHLNCMEILEMIRETGALKREVRDLESQI 485 (521)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 33344445555555566666666555543
No 231
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.03 Score=59.16 Aligned_cols=75 Identities=16% Similarity=0.212 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHH
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK 123 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~ 123 (503)
.+++..-..+..+=+.|..++.++..+..+|..-+...+.++......|-......+..+..|+..|..++.++.
T Consensus 288 lv~dt~w~~lqkegrqlqrdlE~~~~~r~ele~~~~qs~ed~t~q~~~ll~~~q~sE~ll~tlq~~iSqaq~~vq 362 (542)
T KOG0993|consen 288 LVLDTLWFILQKEGRQLQRDLEELIETRAELEHTEQQSQEDITVQRAQLLEERQHSEDLLVTLQAEISQAQSEVQ 362 (542)
T ss_pred cChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 344555555666655666666666666666655555555555555444433333445555666666666555554
No 232
>PLN02939 transferase, transferring glycosyl groups
Probab=97.55 E-value=0.012 Score=68.90 Aligned_cols=27 Identities=19% Similarity=0.179 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 010712 73 AATHGTLRQELAAAQHELQILHGQIGG 99 (503)
Q Consensus 73 a~e~~~LrqeLa~lq~EL~~L~~qL~~ 99 (503)
.++++.+..+-++++.+|.-|+..|.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (977)
T PLN02939 155 LEDLEKILTEKEALQGKINILEMRLSE 181 (977)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhh
Confidence 334444445555666666666666654
No 233
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.55 E-value=1.8e-05 Score=90.42 Aligned_cols=58 Identities=12% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcccccc
Q 010712 177 LESLRQEYHHCRGTYEYEKK---FYNDHLESLQVMEKNYITM---ATEVEKLRAELMNAPNVDR 234 (503)
Q Consensus 177 Ie~L~qELq~lR~ele~ekk---~~~el~eqlqemEk~L~sm---~rEIekLraELekle~el~ 234 (503)
|..|+.+..+++.+++.++. .+.-++++...++.++..| ..++..++.++..|+.++.
T Consensus 259 i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~ 322 (722)
T PF05557_consen 259 IRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELN 322 (722)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666555543 3344556666676666544 5788888888888888763
No 234
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=97.54 E-value=0.11 Score=51.10 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 010712 169 QIPALLSELESLRQEYHHCRGTYEYEKK 196 (503)
Q Consensus 169 qi~~l~~EIe~L~qELq~lR~ele~ekk 196 (503)
++..++.+|.+++...+.++.+++.+.+
T Consensus 144 K~~~~~~ei~~~e~~~~~a~~~~e~is~ 171 (216)
T cd07627 144 KLNSLLSELEEAERRASELKKEFEEVSE 171 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666665555555433
No 235
>PF15294 Leu_zip: Leucine zipper
Probab=97.53 E-value=0.0021 Score=65.12 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712 55 IASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI 97 (503)
Q Consensus 55 Ie~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL 97 (503)
...+..||.+|..+|.+|...+..++.+....-.+-..|+.+|
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L 169 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQL 169 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666777777777776666666555444444444443333
No 236
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=97.53 E-value=0.022 Score=54.78 Aligned_cols=111 Identities=15% Similarity=0.186 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhh-ccchHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 010712 52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQH-ELQILHGQI-GGMKSERELQMRNLTEKIAKMEAELKTAEPVK 129 (503)
Q Consensus 52 EqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~-EL~~L~~qL-~~lkae~E~el~eL~eki~kLEaEL~~le~Lk 129 (503)
.+....+..-|++|..+..+....+..|.++|..... +........ .....+++.-+..|.+.....+.-..-..-|+
T Consensus 8 qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLR 87 (182)
T PF15035_consen 8 QEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALLR 87 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344444455566666666666666666666632210 111110000 01112333344444444333333222223344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR 162 (503)
Q Consensus 130 ~ELeqLraELqqL~~erqeLe~qiq~L~~ELqr 162 (503)
.+|++.+...+.|..++..|..+...+..+|..
T Consensus 88 eQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ 120 (182)
T PF15035_consen 88 EQLEQARKANEALQEDLQKLTQDWERLRDELEQ 120 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555543
No 237
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.0033 Score=69.13 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 010712 175 SELESLRQEYHHCRGTYEYEKKFYNDHLESLQVM 208 (503)
Q Consensus 175 ~EIe~L~qELq~lR~ele~ekk~~~el~eqlqem 208 (503)
.||..+..++..|+.+|+..++.+++|+..+..+
T Consensus 474 rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 474 REIRARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555444444444444444333
No 238
>PRK10698 phage shock protein PspA; Provisional
Probab=97.53 E-value=0.033 Score=55.06 Aligned_cols=10 Identities=10% Similarity=0.175 Sum_probs=4.2
Q ss_pred HHHHHHhccc
Q 010712 222 LRAELMNAPN 231 (503)
Q Consensus 222 LraELekle~ 231 (503)
+..||+.|+.
T Consensus 206 ve~ELa~LK~ 215 (222)
T PRK10698 206 ISEQLAALKA 215 (222)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 239
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=97.52 E-value=0.058 Score=52.84 Aligned_cols=98 Identities=17% Similarity=0.133 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHH----HHHHHHHH
Q 010712 126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEY----EKKFYNDH 201 (503)
Q Consensus 126 e~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~----ekk~~~el 201 (503)
+.++..+..++.--..|...+++....+....+..+.++.... .+|+....||..++...+. ++..+...
T Consensus 100 ek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAe------ekL~~ANeei~~v~~~~~~e~~aLqa~lkk~ 173 (207)
T PF05010_consen 100 EKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAE------EKLEKANEEIAQVRSKHQAELLALQASLKKE 173 (207)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444433221 2244444444444443222 22333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712 202 LESLQVMEKNYITMATEVEKLRAELMNA 229 (503)
Q Consensus 202 ~eqlqemEk~L~sm~rEIekLraELekl 229 (503)
.-+++.+++.|+...+|++.|..--+.|
T Consensus 174 e~~~~SLe~~LeQK~kEn~ELtkICDeL 201 (207)
T PF05010_consen 174 EMKVQSLEESLEQKTKENEELTKICDEL 201 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666666666665555544444
No 240
>PF12815 CTD: Spt5 C-terminal nonapeptide repeat binding Spt4; PDB: 2E70_A.
Probab=97.51 E-value=2.1e-05 Score=70.72 Aligned_cols=6 Identities=17% Similarity=0.772 Sum_probs=0.0
Q ss_pred CCCCCC
Q 010712 351 KGPGYD 356 (503)
Q Consensus 351 ~~p~y~ 356 (503)
|+|+|+
T Consensus 34 rTPa~~ 39 (123)
T PF12815_consen 34 RTPAWG 39 (123)
T ss_dssp ------
T ss_pred cCcccc
Confidence 333333
No 241
>PRK10869 recombination and repair protein; Provisional
Probab=97.51 E-value=0.022 Score=63.47 Aligned_cols=41 Identities=7% Similarity=-0.016 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 54 KIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILH 94 (503)
Q Consensus 54 eIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~ 94 (503)
++..+-.+.+.+..+++++........++++-++-+++.++
T Consensus 158 ~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~ 198 (553)
T PRK10869 158 EMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELN 198 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444443
No 242
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=97.50 E-value=0.0054 Score=70.42 Aligned_cols=46 Identities=24% Similarity=0.376 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHH
Q 010712 147 EELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYE 192 (503)
Q Consensus 147 qeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele 192 (503)
+.|..+++.|+.++.+++.++.++.....++..|+++.+..+.-++
T Consensus 342 ~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~ 387 (726)
T PRK09841 342 RALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYL 387 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555444444444444444444444444333
No 243
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=97.50 E-value=0.018 Score=56.63 Aligned_cols=12 Identities=25% Similarity=0.111 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 010712 75 THGTLRQELAAA 86 (503)
Q Consensus 75 e~~~LrqeLa~l 86 (503)
++..+++.|+.+
T Consensus 39 ~l~~ar~~lA~~ 50 (219)
T TIGR02977 39 TLVEVRTTSART 50 (219)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 244
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=97.49 E-value=0.042 Score=59.93 Aligned_cols=53 Identities=15% Similarity=0.322 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 108 MRNLTEKIAKMEAELKTAE-PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDL 160 (503)
Q Consensus 108 l~eL~eki~kLEaEL~~le-~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~EL 160 (503)
+..+...+..++.++.+++ .+..+....+.+++.+....++|..+.+.|-.+|
T Consensus 69 l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~i 122 (475)
T PRK10361 69 VRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRI 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444333322 2233333334444455555555666666555555
No 245
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=97.49 E-value=0.0088 Score=60.36 Aligned_cols=22 Identities=32% Similarity=0.291 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 010712 76 HGTLRQELAAAQHELQILHGQI 97 (503)
Q Consensus 76 ~~~LrqeLa~lq~EL~~L~~qL 97 (503)
+..++.+|..+..+.+.++.++
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i 43 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRI 43 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 246
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=97.49 E-value=0.0032 Score=69.20 Aligned_cols=14 Identities=36% Similarity=0.275 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHhc
Q 010712 216 ATEVEKLRAELMNA 229 (503)
Q Consensus 216 ~rEIekLraELekl 229 (503)
.+.|+.|+.-|.+.
T Consensus 294 dr~ie~lr~~ln~y 307 (861)
T KOG1899|consen 294 DRFIESLRNYLNNY 307 (861)
T ss_pred hhHHHHHHHHhhhh
Confidence 44455555554443
No 247
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.48 E-value=0.034 Score=59.10 Aligned_cols=36 Identities=22% Similarity=0.160 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR 162 (503)
Q Consensus 127 ~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqr 162 (503)
+|+.-+++++.-|++.+..+++|+.+..-|...+..
T Consensus 245 KL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~ 280 (446)
T KOG4438|consen 245 KLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTN 280 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Confidence 344444455555555555555555555555544443
No 248
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=97.48 E-value=0.051 Score=54.09 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010712 63 QKLATENQRLAATHGTLRQELAAAQHELQILHG 95 (503)
Q Consensus 63 q~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~ 95 (503)
+....+...+...+...-.++..++.+|..++.
T Consensus 34 ~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~ 66 (240)
T PF12795_consen 34 KKQKKRAAEYQKQIDQAPKEIRELQKELEALKS 66 (240)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhc
Confidence 333444444444444444455555555555544
No 249
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=97.47 E-value=0.014 Score=55.72 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHhccc
Q 010712 216 ATEVEKLRAELMNAPN 231 (503)
Q Consensus 216 ~rEIekLraELekle~ 231 (503)
..+|..|+.+++.++.
T Consensus 137 ~~ei~~lr~~iE~~K~ 152 (177)
T PF07798_consen 137 DTEIANLRTEIESLKW 152 (177)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444445555554433
No 250
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=97.47 E-value=0.022 Score=55.79 Aligned_cols=6 Identities=33% Similarity=0.285 Sum_probs=2.2
Q ss_pred HHHHhc
Q 010712 224 AELMNA 229 (503)
Q Consensus 224 aELekl 229 (503)
.+|+.|
T Consensus 210 ~~La~L 215 (221)
T PF04012_consen 210 DELAAL 215 (221)
T ss_pred HHHHHH
Confidence 333333
No 251
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=97.46 E-value=0.039 Score=58.94 Aligned_cols=87 Identities=22% Similarity=0.284 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh---------hhhHHHHHHHHHHHHHHHHHHhhHHHHH--------HHH---HHH
Q 010712 142 LVVAREELIAKVHQLTQDLQRAHTDV---------QQIPALLSELESLRQEYHHCRGTYEYEK--------KFY---NDH 201 (503)
Q Consensus 142 L~~erqeLe~qiq~L~~ELqrlk~el---------qqi~~l~~EIe~L~qELq~lR~ele~ek--------k~~---~el 201 (503)
|..+.+.|..+++.|+.-++.++.++ .++..+.++|+.+..+|++++.-|+.++ +.+ -+.
T Consensus 215 L~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEE 294 (426)
T smart00806 215 LSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEE 294 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHH
Confidence 33444555555666655555555553 3466677777777777777776555542 111 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 202 LESLQVMEKNYITMATEVEKLRAELMN 228 (503)
Q Consensus 202 ~eqlqemEk~L~sm~rEIekLraELek 228 (503)
.+.+.-+++-+..|...|+++...+..
T Consensus 295 qqfL~lQedL~~DL~dDL~ka~eTf~l 321 (426)
T smart00806 295 QQFLTLQEDLIADLKEDLEKAEETFDL 321 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333344444555555555555443
No 252
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.46 E-value=0.0051 Score=65.50 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010712 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ 168 (503)
Q Consensus 127 ~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elq 168 (503)
.+..|+.+++.+...+.++++.++.+++++...+.+++.+++
T Consensus 358 ~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~ 399 (493)
T KOG0804|consen 358 LLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELK 399 (493)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444555555555555554444444433
No 253
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=97.45 E-value=0.016 Score=59.94 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712 201 HLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (503)
Q Consensus 201 l~eqlqemEk~L~sm~rEIekLraELekle~ 231 (503)
+..++...++....+..|.+.|+.-|..++.
T Consensus 257 LRAel~ree~r~K~lKeEmeSLkeiVkdlEA 287 (561)
T KOG1103|consen 257 LRAELEREEKRQKMLKEEMESLKEIVKDLEA 287 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3333333444444444444555544444443
No 254
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=97.45 E-value=0.054 Score=51.59 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010712 106 LQMRNLTEKIAKMEAEL 122 (503)
Q Consensus 106 ~el~eL~eki~kLEaEL 122 (503)
.+++.|-.+....-.++
T Consensus 82 ~eir~LA~~t~~~~~~I 98 (213)
T PF00015_consen 82 DEIRKLAEQTSESAKEI 98 (213)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhHHHHH
Confidence 35555555554444433
No 255
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=97.45 E-value=0.073 Score=56.81 Aligned_cols=41 Identities=12% Similarity=0.111 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712 191 YEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (503)
Q Consensus 191 le~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~ 231 (503)
+...+....++..++.++.+++..++++|+.|+..|.....
T Consensus 253 i~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~ 293 (384)
T PF03148_consen 253 IHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEG 293 (384)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444455555555555555555555555555544433
No 256
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=97.44 E-value=0.015 Score=58.59 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010712 54 KIASQHVEMQKLATENQRLAA 74 (503)
Q Consensus 54 eIe~~~~EIq~Le~enqrLa~ 74 (503)
+|..+..+|..+..+++.|..
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~ 41 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRR 41 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333
No 257
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.016 Score=55.64 Aligned_cols=19 Identities=11% Similarity=0.200 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010712 205 LQVMEKNYITMATEVEKLR 223 (503)
Q Consensus 205 lqemEk~L~sm~rEIekLr 223 (503)
..+++.+|..+..|..-+.
T Consensus 160 e~dL~aELdaL~~E~d~~~ 178 (218)
T KOG1655|consen 160 EADLDAELDALGQELDMLE 178 (218)
T ss_pred HHHHHHHHHHHHhHhhccc
Confidence 4567777777777766554
No 258
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=97.43 E-value=0.025 Score=61.44 Aligned_cols=110 Identities=14% Similarity=0.167 Sum_probs=47.6
Q ss_pred HHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 010712 85 AAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTA-EPVKLEFQKSKTE----AQNLVVAREELIAKVHQLTQD 159 (503)
Q Consensus 85 ~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~l-e~Lk~ELeqLraE----LqqL~~erqeLe~qiq~L~~E 159 (503)
.+...|..|..++..+...++.+.+.|..+|..+..++... ......|..++.+ ++.++..+.+|-.+|..+...
T Consensus 355 ~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~vs~K 434 (531)
T PF15450_consen 355 ELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQIEEVSDK 434 (531)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34444555555555555555555566666666555544321 1122222222222 222223333333344444333
Q ss_pred HHHHHHhhh-----hhHHHHHHHHHHHHHHHHHHhhHHHH
Q 010712 160 LQRAHTDVQ-----QIPALLSELESLRQEYHHCRGTYEYE 194 (503)
Q Consensus 160 Lqrlk~elq-----qi~~l~~EIe~L~qELq~lR~ele~e 194 (503)
....+.++. +..+...+|..+++||..+-..++.+
T Consensus 435 c~~~Ksd~d~kIdtE~k~R~~eV~~vRqELa~lLssvQ~~ 474 (531)
T PF15450_consen 435 CDLHKSDSDTKIDTEGKAREREVGAVRQELATLLSSVQLL 474 (531)
T ss_pred HHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333322 11233445666666666554444443
No 259
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.009 Score=65.84 Aligned_cols=8 Identities=38% Similarity=0.767 Sum_probs=4.0
Q ss_pred CCCCCCCC
Q 010712 239 SYGGATGN 246 (503)
Q Consensus 239 ~y~~~~~~ 246 (503)
.||.+.|-
T Consensus 539 ~~gik~GD 546 (652)
T COG2433 539 EYGIKEGD 546 (652)
T ss_pred hhccccCc
Confidence 45555443
No 260
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=97.41 E-value=0.019 Score=64.30 Aligned_cols=42 Identities=29% Similarity=0.317 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010712 55 IASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQ 96 (503)
Q Consensus 55 Ie~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~q 96 (503)
|..+..||++|+.+.+-|.+.-..-+-.|+..-.||+.|...
T Consensus 68 is~qlqE~rrle~e~~~lre~sl~qkmrLe~qa~Ele~l~~a 109 (739)
T PF07111_consen 68 ISRQLQELRRLEEEVRALRETSLQQKMRLEAQAEELEALARA 109 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 445557778888777666554222333455555566666433
No 261
>PF15294 Leu_zip: Leucine zipper
Probab=97.40 E-value=0.049 Score=55.45 Aligned_cols=104 Identities=13% Similarity=0.184 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH-------------HHHHHHHHHHHHHHHHhhHHHH
Q 010712 128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPA-------------LLSELESLRQEYHHCRGTYEYE 194 (503)
Q Consensus 128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~-------------l~~EIe~L~qELq~lR~ele~e 194 (503)
|..||..|+.|.++|+..+..++.+......+-.+++.+++.+.. -..+|..|+..+..++.+++
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~e-- 207 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELE-- 207 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHH--
Confidence 566677777777777766666666554444444444444333322 12235555555555554433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 010712 195 KKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDR 234 (503)
Q Consensus 195 kk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~ 234 (503)
+...+..++.+.++..+.....+|-+++..|+..++++.
T Consensus 208 -k~~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLe 246 (278)
T PF15294_consen 208 -KALQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELE 246 (278)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHH
Confidence 335555667777777777777777777777777766664
No 262
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=97.39 E-value=0.062 Score=64.19 Aligned_cols=18 Identities=11% Similarity=0.257 Sum_probs=10.8
Q ss_pred CCCChHHHHHHHHHHHHH
Q 010712 44 MMPPPEVMEQKIASQHVE 61 (503)
Q Consensus 44 ~~p~p~~LEqeIe~~~~E 61 (503)
+|.-|..|.+++...-..
T Consensus 163 PLsEp~~LKkkfD~IF~~ 180 (1294)
T KOG0962|consen 163 PLSEPKNLKKKFDDIFSA 180 (1294)
T ss_pred CCCChHHHHHHHHHHHHH
Confidence 345667777776655443
No 263
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.0099 Score=64.12 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=25.3
Q ss_pred CCCCCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 43 DMMPPP----EVMEQKIASQHVEMQKLATENQRLAATHGTLR 80 (503)
Q Consensus 43 ~~~p~p----~~LEqeIe~~~~EIq~Le~enqrLa~e~~~Lr 80 (503)
.++|.| +.|.++|..+..++......++.+.+++.+|+
T Consensus 327 kliPVpvvGF~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLq 368 (508)
T KOG3091|consen 327 KLIPVPVVGFEDLRQRLKVQDQEVKQHRIRINAIGERVTELQ 368 (508)
T ss_pred cccceeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555 67888888877777766666666666666654
No 264
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=97.37 E-value=0.037 Score=62.23 Aligned_cols=103 Identities=9% Similarity=0.110 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---------HHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 010712 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI---------PALLSELESLRQEYHHCRGTYEYEKKF 197 (503)
Q Consensus 127 ~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi---------~~l~~EIe~L~qELq~lR~ele~ekk~ 197 (503)
..+.+|.+.++++.+-...+.+|....+...+-|+.+.++++.+ +..+...++|++.|..-|+...+.+|.
T Consensus 1002 ~~reqlrQ~Q~Q~sqYnqvl~~LksS~~~K~~~l~El~qEl~d~GV~AD~gAeeRA~~RRDELh~~Lst~RsRr~~~Ekq 1081 (1480)
T COG3096 1002 RAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQELQDIGVRADSGAEERARIRRDELHAQLSTNRSRRNQLEKQ 1081 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCcCcchHHHHHHHHHHHHHHHhccHhHHHHHHHH
Confidence 34445555555555555555555555555445555555555543 223344566777777666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712 198 YNDHLESLQVMEKNYITMATEVEKLRAELMNA 229 (503)
Q Consensus 198 ~~el~eqlqemEk~L~sm~rEIekLraELekl 229 (503)
+.-++.+++.+.+.|.++++....++..|-+.
T Consensus 1082 lT~~E~E~~~L~~~~rK~ErDY~~~Re~VV~A 1113 (1480)
T COG3096 1082 LTFCEAEMDNLTRKLRKLERDYFEMREQVVTA 1113 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 66666666666666666666666666655443
No 265
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=97.37 E-value=0.023 Score=66.40 Aligned_cols=14 Identities=14% Similarity=0.427 Sum_probs=8.3
Q ss_pred CChHHHHHHHHHHH
Q 010712 46 PPPEVMEQKIASQH 59 (503)
Q Consensus 46 p~p~~LEqeIe~~~ 59 (503)
|.+..||+-+.-++
T Consensus 369 Pa~~~lEETlSTLE 382 (1041)
T KOG0243|consen 369 PAKHNLEETLSTLE 382 (1041)
T ss_pred CCcccHHHHHHHHH
Confidence 55666776665443
No 266
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=97.37 E-value=0.024 Score=56.18 Aligned_cols=50 Identities=12% Similarity=0.128 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG 98 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~ 98 (503)
..||+-|.....||..-+.-..+...++.++-+.|-.....|..|..++.
T Consensus 74 ~~LeeliNkWs~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~ 123 (254)
T KOG2196|consen 74 KTLEELINKWSLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVV 123 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHH
Confidence 67888888888888777766666777777776666666666666655543
No 267
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=97.36 E-value=0.0046 Score=65.37 Aligned_cols=51 Identities=12% Similarity=0.203 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 111 LTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ 161 (503)
Q Consensus 111 L~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELq 161 (503)
-++.+.+|-.+|+.++.++.+|+.+++.|.+.+.+...+..+...|+..+.
T Consensus 240 akehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ 290 (575)
T KOG4403|consen 240 AKEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLD 290 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHh
Confidence 344455555566666666666666666666666665555555555554443
No 268
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=97.36 E-value=0.13 Score=47.93 Aligned_cols=19 Identities=11% Similarity=0.265 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010712 51 MEQKIASQHVEMQKLATEN 69 (503)
Q Consensus 51 LEqeIe~~~~EIq~Le~en 69 (503)
|++.+..+...+..|...+
T Consensus 3 l~~~~~~l~~~~~~l~~~l 21 (202)
T PF01442_consen 3 LDDRLDSLSSRTEELEERL 21 (202)
T ss_dssp HHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555433
No 269
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=97.35 E-value=0.0062 Score=65.51 Aligned_cols=95 Identities=14% Similarity=0.221 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHH-----------HHHH
Q 010712 135 SKTEAQNLVVAREELIAKVHQLTQDLQR--AHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKF-----------YNDH 201 (503)
Q Consensus 135 LraELqqL~~erqeLe~qiq~L~~ELqr--lk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~-----------~~el 201 (503)
|..+.+.|...+.+|+..|+.|..++.. .+-...++..+..+|..+..+|..+...+..++-. +.+.
T Consensus 211 L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eE 290 (424)
T PF03915_consen 211 LSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEE 290 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555555422 22223456666777777777777766665554321 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712 202 LESLQVMEKNYITMATEVEKLRAELMNA 229 (503)
Q Consensus 202 ~eqlqemEk~L~sm~rEIekLraELekl 229 (503)
.+.+...+.-+..|...++++..-+..+
T Consensus 291 QqfL~~QedL~~DL~eDl~k~~etf~lv 318 (424)
T PF03915_consen 291 QQFLKLQEDLLSDLKEDLKKASETFALV 318 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234444444455555565555554443
No 270
>PRK11519 tyrosine kinase; Provisional
Probab=97.34 E-value=0.013 Score=67.13 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcc
Q 010712 74 ATHGTLRQELAAAQHELQILHGQIGG 99 (503)
Q Consensus 74 ~e~~~LrqeLa~lq~EL~~L~~qL~~ 99 (503)
..++-|+++|..++.+|+..+..+.+
T Consensus 267 ~a~~fL~~ql~~l~~~L~~aE~~l~~ 292 (719)
T PRK11519 267 KSLAFLAQQLPEVRSRLDVAENKLNA 292 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 271
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=97.34 E-value=0.0034 Score=65.12 Aligned_cols=27 Identities=15% Similarity=0.329 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 198 YNDHLESLQVMEKNYITMATEVEKLRA 224 (503)
Q Consensus 198 ~~el~eqlqemEk~L~sm~rEIekLra 224 (503)
..++.++++.++.++..+..++++|++
T Consensus 108 l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 108 LIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455555555555555555554
No 272
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=97.32 E-value=0.051 Score=53.93 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 134 KSKTEAQNLVVAREELIAKVHQLTQDL 160 (503)
Q Consensus 134 qLraELqqL~~erqeLe~qiq~L~~EL 160 (503)
.++.++..+...+..|...+..|+.+|
T Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~Le~Ki 129 (225)
T COG1842 103 ALEAELQQAEEQVEKLKKQLAALEQKI 129 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 273
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=97.32 E-value=0.011 Score=68.31 Aligned_cols=43 Identities=19% Similarity=0.429 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhcc--------chHHHHHHHHHHHHHHHHHHH
Q 010712 78 TLRQELAAAQHELQILHGQIGG--------MKSERELQMRNLTEKIAKMEA 120 (503)
Q Consensus 78 ~LrqeLa~lq~EL~~L~~qL~~--------lkae~E~el~eL~eki~kLEa 120 (503)
.|+.+|..++++|..|+..+.. .+.-.+..+..+..+|..||.
T Consensus 1067 eLReQIq~~KQ~LesLQRAV~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk 1117 (1439)
T PF12252_consen 1067 ELREQIQSVKQDLESLQRAVVTPVVTDAEKVRVRYETLITDITKRITDLEK 1117 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5666677777777777654432 122334445556666666554
No 274
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.32 E-value=0.027 Score=56.70 Aligned_cols=46 Identities=11% Similarity=-0.069 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 010712 190 TYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRR 235 (503)
Q Consensus 190 ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~~ 235 (503)
.++.++++...+.-.++.|-...+.+-.|.+.++..+..|..+|..
T Consensus 161 ~~EgLkak~a~LafDLkamideKEELimERDa~kcKa~RLnhELfv 206 (389)
T KOG4687|consen 161 AHEGLKAKCAGLAFDLKAMIDEKEELIMERDAMKCKAARLNHELFV 206 (389)
T ss_pred HHHHHHHHhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3556677777777777888777777777778888888888877754
No 275
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=97.31 E-value=0.18 Score=50.29 Aligned_cols=30 Identities=10% Similarity=0.147 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 010712 169 QIPALLSELESLRQEYHHCRGTYEYEKKFY 198 (503)
Q Consensus 169 qi~~l~~EIe~L~qELq~lR~ele~ekk~~ 198 (503)
++..++.||.+++.....++.+++.+.+.+
T Consensus 160 K~~~~~~ev~~~e~~~~~a~~~fe~Is~~~ 189 (234)
T cd07664 160 KLQQAKDEIKEWEAKVQQGERDFEQISKTI 189 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666655554433
No 276
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=97.31 E-value=0.14 Score=50.21 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 197 FYNDHLESLQVMEKNYITMATEVEKLRAE 225 (503)
Q Consensus 197 ~~~el~eqlqemEk~L~sm~rEIekLraE 225 (503)
.+..+.++.+.++.....|++....|..+
T Consensus 171 ~L~~l~~e~~~L~~~~~~Le~qk~~L~~e 199 (206)
T PF14988_consen 171 ELLQLIQEAQKLEARKSQLEKQKQQLQQE 199 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444433
No 277
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.29 E-value=0.17 Score=49.05 Aligned_cols=44 Identities=14% Similarity=0.128 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQI 92 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~ 92 (503)
..+.+.|..+...|..++.-+++|......|-..+...-..+..
T Consensus 17 ~e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ 60 (200)
T cd07624 17 DKMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQL 60 (200)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666666555555555544433333
No 278
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.28 E-value=0.25 Score=49.55 Aligned_cols=73 Identities=11% Similarity=0.191 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 139 AQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMA 216 (503)
Q Consensus 139 LqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~ 216 (503)
++.+...+..++.+.++|.+.+. ...+++..+..+|++++.+++...+++..+-...+.++ ..+|...+..++
T Consensus 148 lk~vlK~RdqkQ~d~E~l~E~l~---~rre~~~kLe~~ie~~~~~ve~f~~~~~~E~~~Fe~~K--~~e~k~~l~~~A 220 (240)
T cd07667 148 MKNVLKKRDQVQAEYEAKLEAVA---LRKEERPKVPTDVEKCQDRVECFNADLKADMERWQNNK--RQDFRQLLMGMA 220 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 33344444444444444544442 12344556666777777777655555444433333322 234444444443
No 279
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.28 E-value=0.11 Score=55.41 Aligned_cols=14 Identities=29% Similarity=0.280 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 010712 132 FQKSKTEAQNLVVA 145 (503)
Q Consensus 132 LeqLraELqqL~~e 145 (503)
|.+.+..++.+..+
T Consensus 257 l~k~k~~~~~l~~K 270 (446)
T KOG4438|consen 257 LQKEKSAMVELQEK 270 (446)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 280
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=97.27 E-value=0.018 Score=60.38 Aligned_cols=59 Identities=17% Similarity=0.204 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712 175 SELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 175 ~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el 233 (503)
.+++.+++++..++..++..+..+.++..++..++++++...++.++|+.+++.++.++
T Consensus 221 ~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl 279 (344)
T PF12777_consen 221 QKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKL 279 (344)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444444444444444444444444444444444444444444444444444333
No 281
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=97.27 E-value=0.024 Score=58.49 Aligned_cols=92 Identities=14% Similarity=0.226 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010712 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEP 127 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~ 127 (503)
+..|-.+|...+.+.++....|.+|-.+...|.-+++.++..|..++..+..++.+ +.+++..++.+.+.++.
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re-------~~eK~~elEr~K~~~d~ 151 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQRE-------YREKIRELERQKRAHDS 151 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555433332 23344444444445555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010712 128 VKLEFQKSKTEAQNLVVAR 146 (503)
Q Consensus 128 Lk~ELeqLraELqqL~~er 146 (503)
|+.|+..|+.+|.+....+
T Consensus 152 L~~e~~~Lre~L~~rdeli 170 (302)
T PF09738_consen 152 LREELDELREQLKQRDELI 170 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666655444333
No 282
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=97.27 E-value=0.12 Score=56.38 Aligned_cols=16 Identities=31% Similarity=0.356 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhc
Q 010712 214 TMATEVEKLRAELMNA 229 (503)
Q Consensus 214 sm~rEIekLraELekl 229 (503)
....+|..++.||..+
T Consensus 452 ~R~~eV~~vRqELa~l 467 (531)
T PF15450_consen 452 AREREVGAVRQELATL 467 (531)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456666666666653
No 283
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=97.27 E-value=0.039 Score=63.99 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010712 71 RLAATHGTLRQELAAAQHELQILHGQ 96 (503)
Q Consensus 71 rLa~e~~~LrqeLa~lq~EL~~L~~q 96 (503)
+....+..|+++|..+++|..+++..
T Consensus 1128 K~ia~lnnlqqElklLRnEK~Rmh~~ 1153 (1439)
T PF12252_consen 1128 KAIANLNNLQQELKLLRNEKIRMHSG 1153 (1439)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhhccC
Confidence 33444555555555555554444443
No 284
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=97.26 E-value=0.045 Score=55.51 Aligned_cols=46 Identities=24% Similarity=0.421 Sum_probs=31.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010712 125 AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI 170 (503)
Q Consensus 125 le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi 170 (503)
+..+..++++++..+..+..+...|+.+|+..+.||++.++.++.+
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sL 216 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSL 216 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666777777777777777777777777777777665544
No 285
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=97.25 E-value=0.12 Score=51.56 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH
Q 010712 65 LATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS 102 (503)
Q Consensus 65 Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lka 102 (503)
+..+.++.......+++.|+.+-.++..++.+|..++.
T Consensus 29 ~L~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~ 66 (240)
T PF12795_consen 29 FLDEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKS 66 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhc
Confidence 33455666777777888888888888888888776543
No 286
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.24 E-value=7e-05 Score=87.12 Aligned_cols=14 Identities=36% Similarity=0.439 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH
Q 010712 214 TMATEVEKLRAELM 227 (503)
Q Consensus 214 sm~rEIekLraELe 227 (503)
.+.+.|..|..+|+
T Consensus 522 ~~qr~l~~le~~LE 535 (859)
T PF01576_consen 522 NHQRQLESLEAELE 535 (859)
T ss_dssp --------------
T ss_pred hhHHHHHHHHhHHH
Confidence 34555555555554
No 287
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=97.24 E-value=0.012 Score=59.30 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Q 010712 177 LESLRQEYHHCRGTYEYEKKFYNDH 201 (503)
Q Consensus 177 Ie~L~qELq~lR~ele~ekk~~~el 201 (503)
|.+.++||++|++-++..+..+.+.
T Consensus 119 LKEARkEIkQLkQvieTmrssL~ek 143 (305)
T PF15290_consen 119 LKEARKEIKQLKQVIETMRSSLAEK 143 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchh
Confidence 3344444444444444444444333
No 288
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=97.24 E-value=0.0027 Score=61.24 Aligned_cols=72 Identities=31% Similarity=0.372 Sum_probs=10.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHH
Q 010712 47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAEL 122 (503)
Q Consensus 47 ~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL 122 (503)
....+++.+..+..|+..+...+..+...+..+..+|..++.++......|. +.+.++..|..++..++.++
T Consensus 68 ~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~----~l~~~~~~L~~~~~~l~~~l 139 (194)
T PF08614_consen 68 QISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLA----ELEAELAQLEEKIKDLEEEL 139 (194)
T ss_dssp ----------------------------------------------HHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666656655555555555555544444444332 22234444444444444433
No 289
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.23 E-value=0.051 Score=61.10 Aligned_cols=21 Identities=10% Similarity=0.188 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHH
Q 010712 172 ALLSELESLRQEYHHCRGTYE 192 (503)
Q Consensus 172 ~l~~EIe~L~qELq~lR~ele 192 (503)
.|.+.|++...+|.+|+.+|-
T Consensus 780 ~LqkrIDa~na~Lrrl~~~Ii 800 (1104)
T COG4913 780 QLQKRIDAVNARLRRLREEII 800 (1104)
T ss_pred HHHHhhhhhHHHHHHHHHHHH
Confidence 455566666677777666543
No 290
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=97.23 E-value=0.074 Score=56.86 Aligned_cols=14 Identities=14% Similarity=0.235 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 010712 110 NLTEKIAKMEAELK 123 (503)
Q Consensus 110 eL~eki~kLEaEL~ 123 (503)
....++.++|.|++
T Consensus 235 ~f~~r~~~~E~e~r 248 (554)
T KOG4677|consen 235 IFLKRTLSKEIEFR 248 (554)
T ss_pred HHHHHHhhHHHHHH
Confidence 33444444444444
No 291
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=97.23 E-value=0.1 Score=56.94 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 201 HLESLQVMEKNYITMATEVEKLRAEL 226 (503)
Q Consensus 201 l~eqlqemEk~L~sm~rEIekLraEL 226 (503)
+.++++.|.+.-..|..|-.+|..-|
T Consensus 170 L~~qi~~L~~~n~~i~~ea~nLt~AL 195 (475)
T PRK10361 170 LAHEIRNLQQLNAQMAQEAINLTRAL 195 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444433
No 292
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=97.22 E-value=0.076 Score=51.94 Aligned_cols=57 Identities=11% Similarity=0.279 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------hhHHHHHHHHHHHHHHHHHHhhHHHHH
Q 010712 139 AQNLVVAREELIAKVHQLTQDLQRAHTDVQ-----------QIPALLSELESLRQEYHHCRGTYEYEK 195 (503)
Q Consensus 139 LqqL~~erqeLe~qiq~L~~ELqrlk~elq-----------qi~~l~~EIe~L~qELq~lR~ele~ek 195 (503)
++.+-..|..+..+++.+..+|++.+.++. ++..+..+|.+++..++.++.+++.+.
T Consensus 123 vk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is 190 (236)
T PF09325_consen 123 VKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEIS 190 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555554444433 334445555555555555555544443
No 293
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=97.21 E-value=0.034 Score=59.31 Aligned_cols=18 Identities=11% Similarity=-0.018 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhccccc
Q 010712 216 ATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 216 ~rEIekLraELekle~el 233 (503)
..-++.+-.++.++...|
T Consensus 444 q~~le~v~~~~~~ln~~l 461 (554)
T KOG4677|consen 444 QIGLERVVEILHKLNAPL 461 (554)
T ss_pred HHHHHHHHHHHhhhhhhH
Confidence 444555555566665554
No 294
>PF14992 TMCO5: TMCO5 family
Probab=97.20 E-value=0.011 Score=60.11 Aligned_cols=60 Identities=23% Similarity=0.300 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc------chHHHHHHHHHHHHHHHHHHHH
Q 010712 62 MQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG------MKSERELQMRNLTEKIAKMEAE 121 (503)
Q Consensus 62 Iq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~------lkae~E~el~eL~eki~kLEaE 121 (503)
+|+|...|+.+...+.+.+..+..+..||..+...+.. +..+.+..+++|+...++|+.+
T Consensus 13 ~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~l~~le~e~~~LE~~ 78 (280)
T PF14992_consen 13 EQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIISEERETDLQELELETAKLEKE 78 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhhhchHHHHHHHHhhhHHHhhh
Confidence 34444444444444444444444444444333332221 1223444445555555555443
No 295
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=97.19 E-value=0.02 Score=60.52 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHhcccc
Q 010712 212 YITMATEVEKLRAELMNAPNV 232 (503)
Q Consensus 212 L~sm~rEIekLraELekle~e 232 (503)
|+.+++-|.+|+.|+..+.-+
T Consensus 330 lv~IKqAl~kLk~EI~qMdvr 350 (359)
T PF10498_consen 330 LVKIKQALTKLKQEIKQMDVR 350 (359)
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 345666667777776665433
No 296
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=97.18 E-value=0.025 Score=62.40 Aligned_cols=43 Identities=7% Similarity=0.128 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQI 92 (503)
Q Consensus 50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~ 92 (503)
.++++|..++.....|.-+..-|.+++++-.++|.+++--|+.
T Consensus 108 ~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~ 150 (861)
T KOG1899|consen 108 EYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEE 150 (861)
T ss_pred HHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3444444444433334434444444444443444333333333
No 297
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=97.17 E-value=0.098 Score=59.74 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712 73 AATHGTLRQELAAAQHELQILHGQI 97 (503)
Q Consensus 73 a~e~~~LrqeLa~lq~EL~~L~~qL 97 (503)
.+.+..|++.|+.+..-|.++..-|
T Consensus 49 k~~l~~L~~~l~~ID~ai~~~l~lI 73 (683)
T PF08580_consen 49 KDVLYGLREGLEEIDSAISRFLDLI 73 (683)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3344445555555444444444433
No 298
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=97.17 E-value=0.064 Score=62.83 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010712 59 HVEMQKLATENQRLAATHGT 78 (503)
Q Consensus 59 ~~EIq~Le~enqrLa~e~~~ 78 (503)
...|+.|+.+.+.+..++..
T Consensus 447 ~~~ieele~el~~~~~~l~~ 466 (1041)
T KOG0243|consen 447 AEQIEELEEELENLEKQLKD 466 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 299
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=97.17 E-value=0.035 Score=57.30 Aligned_cols=34 Identities=18% Similarity=0.120 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ 161 (503)
Q Consensus 128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELq 161 (503)
++.|-..++.+|+.+..+..+.+.+.++|..||.
T Consensus 139 ~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELa 172 (401)
T PF06785_consen 139 LREENQCLQLQLDALQQECGEKEEESQTLNRELA 172 (401)
T ss_pred HHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHH
Confidence 3444444555555555555555555555555553
No 300
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=97.16 E-value=0.15 Score=48.09 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010712 134 KSKTEAQNLVVAREELI 150 (503)
Q Consensus 134 qLraELqqL~~erqeLe 150 (503)
.++.+.++|+..|.+|+
T Consensus 95 ~~re~E~qLr~rRD~LE 111 (159)
T PF05384_consen 95 MLREREKQLRERRDELE 111 (159)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 301
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=97.16 E-value=0.38 Score=49.65 Aligned_cols=34 Identities=12% Similarity=0.234 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010712 199 NDHLESLQVMEKNYITMATEVEKLRAELMNAPNV 232 (503)
Q Consensus 199 ~el~eqlqemEk~L~sm~rEIekLraELekle~e 232 (503)
+++..-+....+-..+...|+++|...+.+++++
T Consensus 232 eefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE 265 (391)
T KOG1850|consen 232 EEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKE 265 (391)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344455555555555555544
No 302
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=97.15 E-value=0.025 Score=64.32 Aligned_cols=58 Identities=21% Similarity=0.194 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhccccc
Q 010712 176 ELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMA---TEVEKLRAELMNAPNVD 233 (503)
Q Consensus 176 EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~---rEIekLraELekle~el 233 (503)
++..+..++..+..+++.+.+.+..+..++.+.+.++.... .+..+|..+|..|+.-+
T Consensus 256 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnI 316 (670)
T KOG0239|consen 256 ELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNI 316 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 33333344444444444444444444445555555555444 44445555555554433
No 303
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=97.14 E-value=0.16 Score=50.24 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 51 MEQKIASQHVEMQKLATENQRLAATHGTL 79 (503)
Q Consensus 51 LEqeIe~~~~EIq~Le~enqrLa~e~~~L 79 (503)
.+.+|....+.+..++.+..+....+..+
T Consensus 23 f~~~i~si~~n~s~~e~~i~qi~~~h~d~ 51 (280)
T COG5074 23 FMNKILSINKNLSVYEKEINQIDNLHKDL 51 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555554544444444
No 304
>KOG3958 consensus Putative dynamitin [Cytoskeleton]
Probab=97.12 E-value=0.22 Score=50.91 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 52 EQKIASQHVEMQKLATENQRLAAT 75 (503)
Q Consensus 52 EqeIe~~~~EIq~Le~enqrLa~e 75 (503)
.++...+.-|++.|..+..++..+
T Consensus 93 ~qK~qRll~Ev~eL~~eve~ik~d 116 (371)
T KOG3958|consen 93 QQKYQRLLHEVQELTTEVEKIKTD 116 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555555555555555554443
No 305
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=97.12 E-value=0.019 Score=65.20 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 171 PALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVE 220 (503)
Q Consensus 171 ~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIe 220 (503)
..++.++.+|++++..++.++..+.+.++++.+.+..+...|..+..++.
T Consensus 244 ~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~ 293 (670)
T KOG0239|consen 244 QALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLV 293 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555555555455555444444
No 306
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=97.11 E-value=0.36 Score=48.26 Aligned_cols=28 Identities=7% Similarity=0.128 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 010712 169 QIPALLSELESLRQEYHHCRGTYEYEKK 196 (503)
Q Consensus 169 qi~~l~~EIe~L~qELq~lR~ele~ekk 196 (503)
++..+..||.++++.+..++.+++.+-+
T Consensus 160 K~~~a~~Ev~e~e~k~~~a~~~fe~is~ 187 (234)
T cd07665 160 KLQQAKDEIAEWESRVTQYERDFERISA 187 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666665555433
No 307
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=97.10 E-value=0.2 Score=49.18 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 010712 133 QKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPA----LLSELESLRQEYHHCRGTYEYEKKFYNDHLE 203 (503)
Q Consensus 133 eqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~----l~~EIe~L~qELq~lR~ele~ekk~~~el~e 203 (503)
..+-.-++.+-..|..+-...+.+..+|.+++..+.++.. ....+..++.||+.++...+.+++.++.+.+
T Consensus 97 ~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~ 171 (216)
T cd07627 97 IRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSE 171 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555566666666677777777776666665532 2456778888888888887777777766554
No 308
>PTZ00464 SNF-7-like protein; Provisional
Probab=97.09 E-value=0.12 Score=50.92 Aligned_cols=23 Identities=4% Similarity=0.039 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010712 51 MEQKIASQHVEMQKLATENQRLA 73 (503)
Q Consensus 51 LEqeIe~~~~EIq~Le~enqrLa 73 (503)
+.+.+..+.+.+..|..+..+|.
T Consensus 16 ~~d~~~~l~~r~~~l~kKi~~ld 38 (211)
T PTZ00464 16 LEDASKRIGGRSEVVDARINKID 38 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445444444444444443333
No 309
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.09 E-value=0.077 Score=59.89 Aligned_cols=33 Identities=12% Similarity=0.311 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR 162 (503)
Q Consensus 130 ~ELeqLraELqqL~~erqeLe~qiq~L~~ELqr 162 (503)
.+|++++..|..|+.++..-..++..+..+|..
T Consensus 160 ~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~ 192 (660)
T KOG4302|consen 160 EKLEELREHLNELQKEKSDRLEKVLELKEEIKS 192 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555554444444444444443
No 310
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=97.08 E-value=0.16 Score=57.29 Aligned_cols=65 Identities=11% Similarity=0.160 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccch----HHHHHHHHHHHHHHHHHH
Q 010712 55 IASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMK----SERELQMRNLTEKIAKME 119 (503)
Q Consensus 55 Ie~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lk----ae~E~el~eL~eki~kLE 119 (503)
|..++.+-..|+..+.....+-..++.+|+.+++.+..|.+-|-++. ..+...+.++.++++..+
T Consensus 838 ~~~~~~~Rnei~R~l~~~~~~~QQ~R~Q~d~aKe~~~~LnkLiPql~ll~dE~L~dRveE~~E~L~~a~ 906 (1480)
T COG3096 838 IRQLNSRRNELERALSNHENDNQQQRIQFDQAKEGVTALNRLIPQLNLLADESLADRVEEIRERLDEAQ 906 (1480)
T ss_pred HHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHH
Confidence 33333333333334444444445555555555555555555443321 233344555555554443
No 311
>PF14992 TMCO5: TMCO5 family
Probab=97.07 E-value=0.024 Score=57.56 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 010712 65 LATENQRLAATHGTLRQELAAAQHELQILHGQIGG 99 (503)
Q Consensus 65 Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~ 99 (503)
|+.+.++|.+....|-++|......+++|..+|..
T Consensus 9 le~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~ 43 (280)
T PF14992_consen 9 LEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITK 43 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666666555543
No 312
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.18 Score=52.04 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 170 IPALLSELESLRQEYHHCRGTYEYEKKFYNDHL-------ESLQVMEKNYITMATEVEKLRAELMN 228 (503)
Q Consensus 170 i~~l~~EIe~L~qELq~lR~ele~ekk~~~el~-------eqlqemEk~L~sm~rEIekLraELek 228 (503)
......||++-+.++.+|+..|..+-..+.+.. +.+..+|.+++....-+++-..+|.+
T Consensus 194 ~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~k 259 (297)
T KOG0810|consen 194 AKQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKK 259 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777777666655544333 33444444444444444444444443
No 313
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.2 Score=53.09 Aligned_cols=86 Identities=15% Similarity=0.215 Sum_probs=38.3
Q ss_pred CCCC-CCCCCCCCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhhhcc
Q 010712 36 PGAF-PPFDMMPPP----EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAA-----------AQHELQILHGQIGG 99 (503)
Q Consensus 36 ~~~~-~p~~~~p~p----~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~-----------lq~EL~~L~~qL~~ 99 (503)
++-| +|..++--+ ..|..+=..+...+..+..+...|+..+..+.+++.. ....+..|+..|.+
T Consensus 277 e~~y~~p~gy~lv~dt~w~~lqkegrqlqrdlE~~~~~r~ele~~~~qs~ed~t~q~~~ll~~~q~sE~ll~tlq~~iSq 356 (542)
T KOG0993|consen 277 EELYSEPIGYPLVLDTLWFILQKEGRQLQRDLEELIETRAELEHTEQQSQEDITVQRAQLLEERQHSEDLLVTLQAEISQ 356 (542)
T ss_pred hhhcCCCCCCCcChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5555 444444444 2344442333444444444444444444443333332 23345555555555
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 010712 100 MKSERELQMRNLTEKIAKMEAE 121 (503)
Q Consensus 100 lkae~E~el~eL~eki~kLEaE 121 (503)
++.+.+.++..|...-..+..|
T Consensus 357 aq~~vq~qma~lv~a~e~i~~e 378 (542)
T KOG0993|consen 357 AQSEVQKQMARLVVASETIADE 378 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555444433333333
No 314
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=97.05 E-value=0.17 Score=49.45 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010712 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHG 95 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~ 95 (503)
...++.++..++..+++|..+..++...+..+..--......+..+-.
T Consensus 4 f~~~~~~f~~~e~~~~kL~k~~k~y~~a~~~l~~~~~~~~~~~~~ly~ 51 (216)
T cd07599 4 FEELEKDFKSLEKSLKKLIEQSKAFRDSWRSILTHQIAFAKEFAELYD 51 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 356777888888888888888888777776665444444444444443
No 315
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=97.05 E-value=0.41 Score=47.82 Aligned_cols=65 Identities=9% Similarity=0.104 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 010712 138 EAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPA--LLSELESLRQEYHHCRGTYEYEKKFYNDHL 202 (503)
Q Consensus 138 ELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~--l~~EIe~L~qELq~lR~ele~ekk~~~el~ 202 (503)
-++.+-.+|..+-...+.+..+|++.+..+.++.. -...|..++.|+..++......++.++.+.
T Consensus 120 svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~~~~k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is 186 (234)
T cd07664 120 AVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQYANKPDKLQQAKDEIKEWEAKVQQGERDFEQIS 186 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555544443333311 123455555666666555555555555444
No 316
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=97.04 E-value=0.043 Score=55.09 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 136 KTEAQNLVVAREELIAKVHQLTQDLQRAH 164 (503)
Q Consensus 136 raELqqL~~erqeLe~qiq~L~~ELqrlk 164 (503)
..+++.+..++..|+.+...+...+++|.
T Consensus 39 eek~k~aeeea~~Le~k~~eaee~~~rL~ 67 (246)
T PF00769_consen 39 EEKLKQAEEEAEELEQKRQEAEEEKQRLE 67 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444433
No 317
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=97.04 E-value=0.0094 Score=68.44 Aligned_cols=55 Identities=18% Similarity=0.161 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 010712 153 VHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQV 207 (503)
Q Consensus 153 iq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqe 207 (503)
++.|..++..++++++++.....++...+.++.+++++.+..+..+..+.++.++
T Consensus 341 v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e 395 (726)
T PRK09841 341 YRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQE 395 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433333444444444555555544444444444444433
No 318
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.03 E-value=0.24 Score=49.79 Aligned_cols=87 Identities=13% Similarity=0.178 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHH
Q 010712 134 KSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLE-SLQVMEKNY 212 (503)
Q Consensus 134 qLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~e-qlqemEk~L 212 (503)
.+-.-|+.+-.+|..++.+++.+.+.+.+.+.+. ..+..||++++.+++.+...++.+ ++..++ ..+++...+
T Consensus 146 ~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr---~~~~~ev~~~e~kve~a~~~~k~e---~~Rf~~~k~~D~k~~~ 219 (243)
T cd07666 146 LYSETLMGVIKRRDQIQAELDSKVEALANKKADR---DLLKEEIEKLEDKVECANNALKAD---WERWKQNMQTDLRSAF 219 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3333444445555566666666666665554443 245556666666665554443322 222221 234555555
Q ss_pred HHHHHHHHHHHHHH
Q 010712 213 ITMATEVEKLRAEL 226 (503)
Q Consensus 213 ~sm~rEIekLraEL 226 (503)
+.+.....++..++
T Consensus 220 ~~yae~~i~~~~~~ 233 (243)
T cd07666 220 TDMAENNISYYEEC 233 (243)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555444444444
No 319
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=97.02 E-value=0.08 Score=54.74 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHhcc
Q 010712 215 MATEVEKLRAELMNAP 230 (503)
Q Consensus 215 m~rEIekLraELekle 230 (503)
|-.|+++..-.+++++
T Consensus 246 l~selkkivf~~enie 261 (401)
T PF06785_consen 246 LVSELKKIVFKVENIE 261 (401)
T ss_pred HHHHHHHHHHHHhhHH
Confidence 3344455444444443
No 320
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=97.01 E-value=0.042 Score=50.75 Aligned_cols=41 Identities=12% Similarity=0.110 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010712 55 IASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHG 95 (503)
Q Consensus 55 Ie~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~ 95 (503)
+....+=|-.|....++-....+.|..++..+..++..+..
T Consensus 33 ~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~ 73 (151)
T PF11559_consen 33 DVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQN 73 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33333334444444444444444444444444444444433
No 321
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.29 Score=53.18 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHhccc
Q 010712 215 MATEVEKLRAELMNAPN 231 (503)
Q Consensus 215 m~rEIekLraELekle~ 231 (503)
...-|+.|..||.+.+.
T Consensus 401 ~a~tikeL~~El~~yrr 417 (613)
T KOG0992|consen 401 HAETIKELEIELEEYRR 417 (613)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455666666665543
No 322
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=97.00 E-value=0.12 Score=53.00 Aligned_cols=27 Identities=19% Similarity=0.163 Sum_probs=10.8
Q ss_pred HHHHHHHHhccccccccCCCCCCCCCC
Q 010712 220 EKLRAELMNAPNVDRRADGSYGGATGN 246 (503)
Q Consensus 220 ekLraELekle~el~~~~~~y~~~~~~ 246 (503)
+.+++.+.-|+.++..+-+-|-+.+-|
T Consensus 193 e~qk~tv~~Leaev~~~K~~Y~~slrn 219 (426)
T KOG2008|consen 193 EQQKKTVDDLEAEVTLAKGEYKMSLRN 219 (426)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 333333334444443333444444433
No 323
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=96.99 E-value=0.068 Score=55.24 Aligned_cols=56 Identities=20% Similarity=0.225 Sum_probs=36.6
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010712 43 DMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG 98 (503)
Q Consensus 43 ~~~p~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~ 98 (503)
+|......+|+++....-.-..|..+...|.-+++.|+.+|..++..+..++.++.
T Consensus 81 ~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~ 136 (302)
T PF09738_consen 81 DLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYR 136 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566677777777666666666666666666666666666666666666666654
No 324
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=96.99 E-value=0.027 Score=55.56 Aligned_cols=12 Identities=0% Similarity=0.171 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q 010712 49 EVMEQKIASQHV 60 (503)
Q Consensus 49 ~~LEqeIe~~~~ 60 (503)
..|..+++....
T Consensus 63 ~~l~~E~~R~~~ 74 (221)
T PF05700_consen 63 PLLQAELERVAS 74 (221)
T ss_pred hhHHHHHHHHHc
Confidence 345555554444
No 325
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=96.95 E-value=0.039 Score=55.84 Aligned_cols=62 Identities=13% Similarity=0.155 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712 170 IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (503)
Q Consensus 170 i~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~ 231 (503)
+...+.|++.+..++.+.+.+++.++..+.+...++..++.+...|.+.|..++..|+++..
T Consensus 202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~ 263 (269)
T PF05278_consen 202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHG 263 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45556777777888888888888888888888888888888888888888888888888754
No 326
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=96.95 E-value=0.036 Score=55.68 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR 162 (503)
Q Consensus 128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqr 162 (503)
|..++..+..++..|...+.....+...|..+|..
T Consensus 80 Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ 114 (246)
T PF00769_consen 80 LEQELREAEAEIARLEEESERKEEEAEELQEELEE 114 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555554444444444444444443
No 327
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=96.95 E-value=0.056 Score=58.70 Aligned_cols=22 Identities=5% Similarity=0.280 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010712 50 VMEQKIASQHVEMQKLATENQR 71 (503)
Q Consensus 50 ~LEqeIe~~~~EIq~Le~enqr 71 (503)
.++.+|..+..+++..+...+.
T Consensus 199 ~l~~~l~~lr~~~~~ae~~~~~ 220 (458)
T COG3206 199 SLDERLEELRARLQEAEAQVED 220 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666655555554444
No 328
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.19 Score=51.15 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712 177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229 (503)
Q Consensus 177 Ie~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekl 229 (503)
|..|++.|.++..-++.+-..+.+.-+.+..+|.+++.....++.-...|.++
T Consensus 182 I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA 234 (269)
T KOG0811|consen 182 IEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKA 234 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444455555555555555555555555443
No 329
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=96.95 E-value=0.39 Score=50.58 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 010712 207 VMEKNYITMATEVEKLRAELMNAP 230 (503)
Q Consensus 207 emEk~L~sm~rEIekLraELekle 230 (503)
.+.++.+.|.+|+++.++||+.++
T Consensus 353 aLrkerd~L~keLeekkreleql~ 376 (442)
T PF06637_consen 353 ALRKERDSLAKELEEKKRELEQLK 376 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 330
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=96.95 E-value=0.22 Score=53.01 Aligned_cols=39 Identities=10% Similarity=0.080 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 010712 196 KFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDR 234 (503)
Q Consensus 196 k~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~ 234 (503)
+.+.+..+-..+++..+..+.+||.+....|+.+++.++
T Consensus 278 ~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~air 316 (421)
T KOG2685|consen 278 KRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIR 316 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 344444455555555555666666666666666655554
No 331
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=96.94 E-value=0.51 Score=48.01 Aligned_cols=56 Identities=16% Similarity=0.109 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHH
Q 010712 136 KTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEK 195 (503)
Q Consensus 136 raELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ek 195 (503)
+..|+.++..++.|..+|+.|+.. ..+..+|..|++||-.++.|....+.+|...+
T Consensus 137 E~sl~p~R~~r~~l~d~I~kLk~k----~P~s~kl~~LeqELvraEae~lvaEAqL~n~k 192 (271)
T PF13805_consen 137 EESLQPSRDRRRKLQDEIAKLKYK----DPQSPKLVVLEQELVRAEAENLVAEAQLSNIK 192 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHhHHHHHHHHHHHhc----CCCChHHHHHHHHHHHHHHHhhHHHHHHHHhh
Confidence 334444444444444444433221 12233556666666666665555555555443
No 332
>PRK11519 tyrosine kinase; Provisional
Probab=96.94 E-value=0.016 Score=66.50 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=8.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHH
Q 010712 182 QEYHHCRGTYEYEKKFYNDHLE 203 (503)
Q Consensus 182 qELq~lR~ele~ekk~~~el~e 203 (503)
.++.+++++.+..++.+..+.+
T Consensus 370 ~~~~~L~Re~~~~~~lY~~lL~ 391 (719)
T PRK11519 370 QEIVRLTRDVESGQQVYMQLLN 391 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 333
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=96.94 E-value=0.07 Score=60.48 Aligned_cols=100 Identities=13% Similarity=0.249 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhh-----------hHHHHHHHHHHHHHHHHHHhhHHHH
Q 010712 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT-DVQQ-----------IPALLSELESLRQEYHHCRGTYEYE 194 (503)
Q Consensus 127 ~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~-elqq-----------i~~l~~EIe~L~qELq~lR~ele~e 194 (503)
.++.+...++.+++.+..+.+.+..++++|..+|.+.+. ++.. -..++.++...+.++++...-+..-
T Consensus 999 efE~~mrdhrselEe~kKe~eaiineiee~eaeIiQekE~el~e~efka~d~Sd~r~kie~efAa~eaemdeik~~~~ed 1078 (1424)
T KOG4572|consen 999 EFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEKEGELIEDEFKALDESDPRAKIEDEFAAIEAEMDEIKDGKCED 1078 (1424)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHhhhccccCcchhHHHHHHHHHhhhhhhhhhhhhh
Confidence 344444444555555555555555555555555532111 1110 1233444555555555444332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 195 KKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (503)
Q Consensus 195 kk~~~el~eqlqemEk~L~sm~rEIekLraELek 228 (503)
+.+..+..+-+ ++.+++.+..|+++|+..+..
T Consensus 1079 rakqkei~k~L--~ehelenLrnEieklndkIkd 1110 (1424)
T KOG4572|consen 1079 RAKQKEIDKIL--KEHELENLRNEIEKLNDKIKD 1110 (1424)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 22222222222 234566777777777776654
No 334
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.94 E-value=0.41 Score=51.52 Aligned_cols=21 Identities=14% Similarity=0.071 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010712 206 QVMEKNYITMATEVEKLRAEL 226 (503)
Q Consensus 206 qemEk~L~sm~rEIekLraEL 226 (503)
.+.++++.++..+++++++..
T Consensus 187 ~e~~e~~~s~~~~~k~~k~~a 207 (438)
T COG4487 187 KENEEQRESKWAILKKLKRRA 207 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555544433
No 335
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=96.93 E-value=0.31 Score=48.26 Aligned_cols=18 Identities=11% Similarity=0.196 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010712 60 VEMQKLATENQRLAATHG 77 (503)
Q Consensus 60 ~EIq~Le~enqrLa~e~~ 77 (503)
++|..+..++..|+.+..
T Consensus 22 ~el~~f~keRa~iE~eYa 39 (236)
T cd07651 22 EELRSFYKERASIEEEYA 39 (236)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 336
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=96.93 E-value=0.059 Score=57.44 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010712 177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 230 (503)
Q Consensus 177 Ie~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle 230 (503)
|..|......+...++..+..+..+.+. |.++++.+...+++|...|++|+
T Consensus 338 l~~le~~q~~l~~~l~~~~~~L~~ve~~---~~~N~~~i~~n~~~le~Ri~~L~ 388 (388)
T PF04912_consen 338 LSELESQQSDLQSQLKKWEELLNKVEEK---FKENMETIEKNVKKLEERIAKLQ 388 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhccC
Confidence 4444444444444444444444444433 66777778888888888887763
No 337
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=96.92 E-value=0.5 Score=46.68 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 010712 169 QIPALLSELESLRQEYHHCRGTYEYEKKF 197 (503)
Q Consensus 169 qi~~l~~EIe~L~qELq~lR~ele~ekk~ 197 (503)
++..++.||.+++...+.++.+++.+.+.
T Consensus 150 K~~~~~~ev~~~e~~~~~a~~~fe~is~~ 178 (224)
T cd07623 150 KLDQAQQEIKEWEAKVDRGQKEFEEISKT 178 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666665555433
No 338
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=96.89 E-value=0.086 Score=56.10 Aligned_cols=16 Identities=6% Similarity=0.081 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 010712 130 LEFQKSKTEAQNLVVA 145 (503)
Q Consensus 130 ~ELeqLraELqqL~~e 145 (503)
+||++++.+|+++..+
T Consensus 309 kelE~lR~~L~kAEke 324 (575)
T KOG4403|consen 309 KELEQLRVALEKAEKE 324 (575)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555544433
No 339
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=96.89 E-value=0.056 Score=54.17 Aligned_cols=53 Identities=26% Similarity=0.328 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 010712 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELES 179 (503)
Q Consensus 127 ~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~ 179 (503)
.|..++..++.+++.+......++..++.++++|..++.++.++...+.+|.-
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p 105 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP 105 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566666666666666666666666666666666666666555555444
No 340
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.039 Score=59.67 Aligned_cols=30 Identities=17% Similarity=0.008 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 010712 180 LRQEYHHCRGTYEYEKKFYNDHLESLQVME 209 (503)
Q Consensus 180 L~qELq~lR~ele~ekk~~~el~eqlqemE 209 (503)
+.+.++++..+.+.+.+....++.++.+|+
T Consensus 464 ~~e~~e~lt~~~e~l~~Lv~Ilk~d~edi~ 493 (508)
T KOG3091|consen 464 LIEMKEHLTQEQEALTKLVNILKGDQEDIK 493 (508)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 333445555555666666666666666665
No 341
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=96.89 E-value=0.014 Score=53.18 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712 192 EYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229 (503)
Q Consensus 192 e~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekl 229 (503)
+.+++.++.+.+.++++++++..+.++++.+...|..+
T Consensus 97 ~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 97 EILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444443
No 342
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.89 E-value=0.011 Score=57.73 Aligned_cols=32 Identities=22% Similarity=0.074 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 134 KSKTEAQNLVVAREELIAKVHQLTQDLQRAHT 165 (503)
Q Consensus 134 qLraELqqL~~erqeLe~qiq~L~~ELqrlk~ 165 (503)
+|+.+.++|+.+.+++..+++.|+.+++.++.
T Consensus 136 ~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 136 GLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555554444443
No 343
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=96.88 E-value=0.14 Score=48.20 Aligned_cols=11 Identities=0% Similarity=0.326 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 010712 217 TEVEKLRAELM 227 (503)
Q Consensus 217 rEIekLraELe 227 (503)
..+..+...|+
T Consensus 140 ~dl~~v~~~~e 150 (159)
T PF05384_consen 140 GDLQQVSEQIE 150 (159)
T ss_pred hhHHHHHHHHH
Confidence 33333333333
No 344
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.88 E-value=0.066 Score=57.29 Aligned_cols=37 Identities=16% Similarity=0.220 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH 164 (503)
Q Consensus 128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk 164 (503)
++.+...++++.+.+...++++..++.++.+++..++
T Consensus 366 l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 366 LKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444455555554444443
No 345
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=0.24 Score=53.77 Aligned_cols=13 Identities=8% Similarity=-0.189 Sum_probs=5.8
Q ss_pred HHHHHHHhccccc
Q 010712 221 KLRAELMNAPNVD 233 (503)
Q Consensus 221 kLraELekle~el 233 (503)
++..-|..|..++
T Consensus 400 K~a~tikeL~~El 412 (613)
T KOG0992|consen 400 KHAETIKELEIEL 412 (613)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 346
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.29 Score=53.85 Aligned_cols=23 Identities=13% Similarity=0.390 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010712 52 EQKIASQHVEMQKLATENQRLAA 74 (503)
Q Consensus 52 EqeIe~~~~EIq~Le~enqrLa~ 74 (503)
.+++..+...|.+|+..+.++..
T Consensus 273 ~~~f~e~~~~i~~l~~~l~~l~~ 295 (503)
T KOG2273|consen 273 DKEFTEKKEKIDKLEQQLKKLSK 295 (503)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555544444433
No 347
>PRK09343 prefoldin subunit beta; Provisional
Probab=96.83 E-value=0.021 Score=51.32 Aligned_cols=32 Identities=13% Similarity=0.101 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712 198 YNDHLESLQVMEKNYITMATEVEKLRAELMNA 229 (503)
Q Consensus 198 ~~el~eqlqemEk~L~sm~rEIekLraELekl 229 (503)
++.+..+++.++++...+.+.+++++..|.++
T Consensus 80 ~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 80 KELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555566666666555554
No 348
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=96.82 E-value=0.65 Score=46.56 Aligned_cols=50 Identities=22% Similarity=0.263 Sum_probs=28.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712 45 MPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI 97 (503)
Q Consensus 45 ~p~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL 97 (503)
-|-++.-=++|....++|+.|+.++......+..+ |.....+|..+...|
T Consensus 6 dprVq~eLe~LN~atd~IN~lE~~L~~ar~~fr~~---l~e~~~kL~~~~kkL 55 (239)
T PF05276_consen 6 DPRVQEELEKLNQATDEINRLENELDEARATFRRL---LSESTKKLNELAKKL 55 (239)
T ss_pred ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 45565555677778888888887666555544333 333333444443333
No 349
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.04 Score=48.35 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 010712 195 KKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDR 234 (503)
Q Consensus 195 kk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~ 234 (503)
.+.++.+..+++-.++++..++++.++.+..|.++++...
T Consensus 75 ~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q 114 (120)
T KOG3478|consen 75 GKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQAAQ 114 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455566666667777777777777777777777766543
No 350
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=96.81 E-value=0.058 Score=57.18 Aligned_cols=11 Identities=18% Similarity=0.145 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 010712 128 VKLEFQKSKTE 138 (503)
Q Consensus 128 Lk~ELeqLraE 138 (503)
|++|..++..|
T Consensus 60 Lq~e~~~l~e~ 70 (459)
T KOG0288|consen 60 LQEENTQLNEE 70 (459)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 351
>PTZ00464 SNF-7-like protein; Provisional
Probab=96.81 E-value=0.16 Score=50.00 Aligned_cols=31 Identities=10% Similarity=0.109 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGTL 79 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~L 79 (503)
..|+.+++.+..+|..|..++.++...+...
T Consensus 21 ~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~ 51 (211)
T PTZ00464 21 KRIGGRSEVVDARINKIDAELMKLKEQIQRT 51 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566667777777766666666655544433
No 352
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=96.80 E-value=0.52 Score=45.09 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGT 78 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~ 78 (503)
..|.++|..++-|-...+..+..|..+...
T Consensus 7 K~LQeKIrrLELER~qAe~nl~~LS~et~~ 36 (178)
T PF14073_consen 7 KNLQEKIRRLELERSQAEDNLKQLSRETSH 36 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 345555555554444444444444444333
No 353
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=96.78 E-value=0.68 Score=46.39 Aligned_cols=61 Identities=16% Similarity=0.166 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-HHhccccccc
Q 010712 175 SELESLRQEYHHCRGTYEYEKKFYNDHLESLQV----MEKNYITMATEVEKLRAE-LMNAPNVDRR 235 (503)
Q Consensus 175 ~EIe~L~qELq~lR~ele~ekk~~~el~eqlqe----mEk~L~sm~rEIekLraE-Lekle~el~~ 235 (503)
.|++.++..+++++.+++..++.+......+.+ -++.+...-...+.|+.| |.=++.-+|.
T Consensus 154 ke~~K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~~~~w~~~~~~~c~~fq~lEeeRi~f~k~~lw~ 219 (240)
T cd07672 154 KQQEKLFAKLAQSKQNAEDADRLYMQNISVLDKIREDWQKEHVKACEFFEKQECERINFFRNAVWT 219 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555554444444443333332 233333444444444443 3344445664
No 354
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=96.78 E-value=0.031 Score=58.31 Aligned_cols=18 Identities=6% Similarity=-0.001 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 010712 212 YITMATEVEKLRAELMNA 229 (503)
Q Consensus 212 L~sm~rEIekLraELekl 229 (503)
+..++.+++..+..|+++
T Consensus 192 ~~~~~a~l~~a~~~l~~~ 209 (346)
T PRK10476 192 RAAREAALAIAELHLEDT 209 (346)
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 334455555555566554
No 355
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=96.77 E-value=0.54 Score=47.15 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010712 72 LAATHGTLRQELAAAQHEL 90 (503)
Q Consensus 72 La~e~~~LrqeLa~lq~EL 90 (503)
..++|..|+.+|+.++...
T Consensus 19 atd~IN~lE~~L~~ar~~f 37 (239)
T PF05276_consen 19 ATDEINRLENELDEARATF 37 (239)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 356
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.77 E-value=0.14 Score=56.95 Aligned_cols=8 Identities=0% Similarity=0.297 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 010712 206 QVMEKNYI 213 (503)
Q Consensus 206 qemEk~L~ 213 (503)
+.+..++.
T Consensus 352 ~~l~~~~~ 359 (557)
T COG0497 352 KKLKAELL 359 (557)
T ss_pred HHHHHHHH
Confidence 33333333
No 357
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=96.77 E-value=0.19 Score=55.16 Aligned_cols=47 Identities=17% Similarity=0.308 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhh
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLA--ATHGTLRQELAAAQHELQILHGQI 97 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa--~e~~~LrqeLa~lq~EL~~L~~qL 97 (503)
+-|-+++.+..++|.+|+.|...+. .++..+ +|+.-.+.++.+.+++
T Consensus 305 e~L~qqV~qs~EKIa~LEqEKEHw~LEaQL~kI--KLEKEnkRiadLekev 353 (518)
T PF10212_consen 305 EGLAQQVQQSQEKIAKLEQEKEHWMLEAQLAKI--KLEKENKRIADLEKEV 353 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 4456667777777777777665543 333332 3333333344444433
No 358
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=96.76 E-value=0.11 Score=55.71 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 204 SLQVMEKNYITMATEVEKLRAELM 227 (503)
Q Consensus 204 qlqemEk~L~sm~rEIekLraELe 227 (503)
++.+++.++...+.++.+++.+|+
T Consensus 228 ~~~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 228 ELETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555666666666666666664
No 359
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=96.75 E-value=0.088 Score=54.22 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 010712 206 QVMEKNYITMATEVEKLRAELMNA 229 (503)
Q Consensus 206 qemEk~L~sm~rEIekLraELekl 229 (503)
...+.++..++.+++..+..|+++
T Consensus 182 ~~~~~~~~~~~~~l~~a~~~l~~~ 205 (327)
T TIGR02971 182 DLAQAEVKSALEAVQQAEALLELT 205 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344445555566666666666554
No 360
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins. The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum
Probab=96.75 E-value=0.56 Score=48.23 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 010712 107 QMRNLTEKIAKMEAELKTAE 126 (503)
Q Consensus 107 el~eL~eki~kLEaEL~~le 126 (503)
+-.+|...|..+..+|..+.
T Consensus 60 ~q~~lw~~i~el~~~L~~l~ 79 (289)
T PF05149_consen 60 QQQELWREIQELERELQDLA 79 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555443
No 361
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=96.74 E-value=0.2 Score=52.58 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI 97 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL 97 (503)
+..+..++...+..+|.+..+..++.++.....+||+..+.-++.+...+
T Consensus 134 ~~~~~~~~~~~~q~lq~~~~~~er~~~~y~~~~qElq~k~t~~~afn~ti 183 (464)
T KOG4637|consen 134 INAVGKKLREYHQQLQEKSLEYERLYEEYTRTSQELQMKRTAIEAFNETI 183 (464)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 45566667777777777777777777777777666666665555554444
No 362
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.52 Score=54.33 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712 204 SLQVMEKNYITMATEVEKLRAELMNAPN 231 (503)
Q Consensus 204 qlqemEk~L~sm~rEIekLraELekle~ 231 (503)
++..+++.++.+.+++..|.+.|..+..
T Consensus 775 E~~~lEe~~d~~~ee~~el~a~v~~~~~ 802 (984)
T COG4717 775 ELALLEEAIDALDEEVEELHAQVAALSR 802 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333
No 363
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=96.74 E-value=0.11 Score=52.00 Aligned_cols=34 Identities=18% Similarity=0.365 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ 161 (503)
Q Consensus 128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELq 161 (503)
++.++..++.++.++...+++|.--+..+..+|+
T Consensus 82 q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~ 115 (251)
T PF11932_consen 82 QEQELASLEQQIEQIEETRQELVPLMEQMIDELE 115 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555555555554444444443
No 364
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=96.74 E-value=0.042 Score=58.67 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHH
Q 010712 127 PVKLEFQKSKTEAQNLVVAREELIAKVH----QLTQDLQRAHTDVQQIPALLSE-LESLRQEYHHCRGTYEYEKKFYNDH 201 (503)
Q Consensus 127 ~Lk~ELeqLraELqqL~~erqeLe~qiq----~L~~ELqrlk~elqqi~~l~~E-Ie~L~qELq~lR~ele~ekk~~~el 201 (503)
.+..||.+++.....|....+.|..+++ -+.+.|++.+-..++|++...+ ++.-+.|+..|+++|...+.+.+++
T Consensus 216 ~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yq 295 (395)
T PF10267_consen 216 KILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQ 295 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3444444444444444444444444222 2222222222223334444444 2333467777777777766666654
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHH
Q 010712 202 L-ESLQVMEKNYITMATEVEKLR 223 (503)
Q Consensus 202 ~-eqlqemEk~L~sm~rEIekLr 223 (503)
. ++.+++++.|+++...|.+|+
T Consensus 296 s~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 296 SYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Confidence 4 567899999999999999888
No 365
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=96.73 E-value=0.14 Score=54.85 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccc
Q 010712 209 EKNYITMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 209 Ek~L~sm~rEIekLraELekle~el 233 (503)
+.++..++.++..++++|++++..+
T Consensus 226 ~~~~~~~~~~l~~~~~~l~~~~~~l 250 (421)
T TIGR03794 226 EKELETVEARIKEARYEIEELENKL 250 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777776665
No 366
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.72 E-value=0.79 Score=46.10 Aligned_cols=6 Identities=33% Similarity=0.307 Sum_probs=2.2
Q ss_pred HHHHHH
Q 010712 211 NYITMA 216 (503)
Q Consensus 211 ~L~sm~ 216 (503)
.++.+.
T Consensus 225 ~~i~~~ 230 (243)
T cd07666 225 NNISYY 230 (243)
T ss_pred HHHHHH
Confidence 333333
No 367
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=96.72 E-value=0.67 Score=45.27 Aligned_cols=10 Identities=20% Similarity=0.179 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 010712 134 KSKTEAQNLV 143 (503)
Q Consensus 134 qLraELqqL~ 143 (503)
.+..+|++.+
T Consensus 139 ~a~~~l~kkk 148 (236)
T PF09325_consen 139 NAEKELQKKK 148 (236)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 368
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.70 E-value=0.71 Score=46.39 Aligned_cols=16 Identities=6% Similarity=0.156 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHhcc
Q 010712 215 MATEVEKLRAELMNAP 230 (503)
Q Consensus 215 m~rEIekLraELekle 230 (503)
+.+-.+.++..|+.+.
T Consensus 220 ~~~~~e~~~~~~~~id 235 (261)
T cd07648 220 VGQVHEEFKRQVDELT 235 (261)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 3444455555555543
No 369
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.24 Score=56.94 Aligned_cols=64 Identities=16% Similarity=0.246 Sum_probs=40.3
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhccchH
Q 010712 39 FPPFDMMPPPEVMEQKIASQHVEMQKLATENQRL---AATHGTLRQELAAAQHELQILHGQIGGMKS 102 (503)
Q Consensus 39 ~~p~~~~p~p~~LEqeIe~~~~EIq~Le~enqrL---a~e~~~LrqeLa~lq~EL~~L~~qL~~lka 102 (503)
|.|.-.-|++.++-.+|.....+|+.-+.++..+ .++.......|+.++++|..+..+|..+..
T Consensus 174 yKP~GrnP~iNq~l~klkq~~~ei~e~eke~a~yh~lLe~r~~~~~rl~~l~~elr~~~~~i~~~~~ 240 (984)
T COG4717 174 YKPSGRNPQINQLLEKLKQERNEIDEAEKEYATYHKLLESRRAEHARLAELRSELRADRDHIRALRD 240 (984)
T ss_pred cCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667787777777777777776666555443 344444555566677777777776655443
No 370
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=96.68 E-value=0.84 Score=49.77 Aligned_cols=31 Identities=13% Similarity=0.102 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 010712 204 SLQVMEKNYITMATEVEKLRAELMNAPNVDR 234 (503)
Q Consensus 204 qlqemEk~L~sm~rEIekLraELekle~el~ 234 (503)
++.++.+++..+..++.+|..++.+|.+.++
T Consensus 158 ~~~~~~~~i~~~lg~~~~la~e~~~Lt~~Lk 188 (448)
T COG1322 158 ERSTLLEEIDRLLGEIQQLAQEAGNLTAALK 188 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444444444444444444444444443
No 371
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.68 E-value=0.27 Score=55.60 Aligned_cols=14 Identities=14% Similarity=0.283 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHh
Q 010712 215 MATEVEKLRAELMN 228 (503)
Q Consensus 215 m~rEIekLraELek 228 (503)
+...|...++++++
T Consensus 861 ~~~~L~~er~~IeE 874 (1104)
T COG4913 861 LLSHLDHERALIEE 874 (1104)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 372
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.025 Score=50.66 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 196 KFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (503)
Q Consensus 196 k~~~el~eqlqemEk~L~sm~rEIekLraELek 228 (503)
+.++.+..+++.++++...+..++++|+++|-+
T Consensus 77 er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 77 ERKETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555544
No 373
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=96.67 E-value=0.22 Score=49.57 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010712 199 NDHLESLQVMEKNYITMATEVEK 221 (503)
Q Consensus 199 ~el~eqlqemEk~L~sm~rEIek 221 (503)
...+..++-++.+.-.|++.+++
T Consensus 222 nah~~sLqwl~d~st~~e~k~d~ 244 (254)
T KOG2196|consen 222 NAHMDSLQWLDDNSTQLEKKLDK 244 (254)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHH
Confidence 33444444444444444444433
No 374
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=96.67 E-value=0.081 Score=51.95 Aligned_cols=76 Identities=16% Similarity=0.125 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 135 SKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYI 213 (503)
Q Consensus 135 LraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~ 213 (503)
++..+..++.+++++..+..+|..++.+++.+.+ +++.+|..|+.|+.+|...++.+...+..++++..+++..++
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~e---e~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~E 208 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYE---EVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVE 208 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccccc
Confidence 3334444444444444444444444444443322 223334444444444444444443344444444444444433
No 375
>PLN03188 kinesin-12 family protein; Provisional
Probab=96.67 E-value=0.39 Score=57.48 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712 54 KIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI 97 (503)
Q Consensus 54 eIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL 97 (503)
+++...++++-++++. ++..--++|+-+|+.-+.-.+.|+.+|
T Consensus 1046 e~~l~~er~~w~e~es-~wislteelr~eles~r~l~Ekl~~EL 1088 (1320)
T PLN03188 1046 EKKLEQERLRWTEAES-KWISLAEELRTELDASRALAEKQKHEL 1088 (1320)
T ss_pred hHHHHHHHHHHHHHhh-hheechHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555444433 222222444444544444444444444
No 376
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.053 Score=48.54 Aligned_cols=40 Identities=18% Similarity=0.182 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 010712 196 KFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRR 235 (503)
Q Consensus 196 k~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~~ 235 (503)
+..+++.++...++.++..+++..++++.++++++.++..
T Consensus 70 ~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 70 EAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777777777777777777777777654
No 377
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=96.65 E-value=0.0031 Score=65.21 Aligned_cols=17 Identities=6% Similarity=0.077 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHhhHH
Q 010712 176 ELESLRQEYHHCRGTYE 192 (503)
Q Consensus 176 EIe~L~qELq~lR~ele 192 (503)
.|..|+..+..+..++.
T Consensus 113 sIS~Lqs~v~~lsTdvs 129 (326)
T PF04582_consen 113 SISDLQSSVSALSTDVS 129 (326)
T ss_dssp -----HHHHHHHHHHHH
T ss_pred hHHHHHHhhhhhhhhhh
Confidence 34444444444444433
No 378
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=96.65 E-value=0.73 Score=44.81 Aligned_cols=13 Identities=31% Similarity=0.376 Sum_probs=5.4
Q ss_pred HHHHHHHHhhhhc
Q 010712 86 AQHELQILHGQIG 98 (503)
Q Consensus 86 lq~EL~~L~~qL~ 98 (503)
++.++..++.+++
T Consensus 58 akee~~~~r~~~E 70 (201)
T PF12072_consen 58 AKEEAQKLRQELE 70 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 379
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=96.63 E-value=0.25 Score=45.70 Aligned_cols=49 Identities=18% Similarity=0.277 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL 222 (503)
Q Consensus 174 ~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekL 222 (503)
..+|..|.+-+++.+.+++.....+++..++-..+-..|..|-.|-+++
T Consensus 97 NreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~~ 145 (159)
T PF04949_consen 97 NRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESERL 145 (159)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443334444444444443333
No 380
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=96.63 E-value=0.71 Score=44.42 Aligned_cols=21 Identities=29% Similarity=0.226 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010712 206 QVMEKNYITMATEVEKLRAEL 226 (503)
Q Consensus 206 qemEk~L~sm~rEIekLraEL 226 (503)
.+..+.+..++.|-+.||.-|
T Consensus 156 ~~~qe~i~qL~~EN~~LRelL 176 (181)
T PF05769_consen 156 QEEQEIIAQLETENKGLRELL 176 (181)
T ss_pred HhHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666666554
No 381
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=96.63 E-value=0.28 Score=52.59 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010712 59 HVEMQKLATENQRLAATHG 77 (503)
Q Consensus 59 ~~EIq~Le~enqrLa~e~~ 77 (503)
..||+.|..++.-|...+.
T Consensus 154 ~~el~~lrrdLavlRQ~~~ 172 (426)
T smart00806 154 RAELKSLQRELAVLRQTHN 172 (426)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555555555544444333
No 382
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=96.62 E-value=0.17 Score=44.35 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 010712 177 LESLRQEYHHCRGTYEYEKKFYNDHLES 204 (503)
Q Consensus 177 Ie~L~qELq~lR~ele~ekk~~~el~eq 204 (503)
|.+|+.+|..++..++.+|-...++..+
T Consensus 60 ~~eLqaki~ea~~~le~eK~ak~~l~~r 87 (107)
T PF09304_consen 60 IAELQAKIDEARRNLEDEKQAKLELESR 87 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444454444433333333333
No 383
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=96.62 E-value=0.053 Score=55.15 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHhhHH
Q 010712 176 ELESLRQEYHHCRGTYE 192 (503)
Q Consensus 176 EIe~L~qELq~lR~ele 192 (503)
+++++..|++.++++++
T Consensus 309 ~L~eVm~e~E~~KqemE 325 (384)
T KOG0972|consen 309 TLDEVMDEIEQLKQEME 325 (384)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 384
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=96.61 E-value=0.96 Score=45.71 Aligned_cols=24 Identities=8% Similarity=0.245 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 50 VMEQKIASQHVEMQKLATENQRLA 73 (503)
Q Consensus 50 ~LEqeIe~~~~EIq~Le~enqrLa 73 (503)
.|.-.++....|.+.+...+.++.
T Consensus 94 klsaavenak~e~~~id~~na~i~ 117 (353)
T PF01540_consen 94 KLSAAVENAKNEKKAIDDKNAQID 117 (353)
T ss_pred HHHHHHHhhhhhhhhhhhhhHHHH
Confidence 333334444444444444444433
No 385
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=96.60 E-value=0.89 Score=47.61 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHHHHHH
Q 010712 190 TYEYEKKFYNDHLESLQ 206 (503)
Q Consensus 190 ele~ekk~~~el~eqlq 206 (503)
.++.+++....+.+-+.
T Consensus 282 diEtL~~~~~~li~ti~ 298 (333)
T PF05816_consen 282 DIETLKKAFQNLIETIE 298 (333)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 34444444444444333
No 386
>PRK09343 prefoldin subunit beta; Provisional
Probab=96.60 E-value=0.072 Score=47.83 Aligned_cols=18 Identities=11% Similarity=-0.254 Sum_probs=6.5
Q ss_pred HHHhhHHHHHHHHHHHHH
Q 010712 186 HCRGTYEYEKKFYNDHLE 203 (503)
Q Consensus 186 ~lR~ele~ekk~~~el~e 203 (503)
-++.+|+.+.+....+.+
T Consensus 82 ~ie~~ik~lekq~~~l~~ 99 (121)
T PRK09343 82 LLELRSRTLEKQEKKLRE 99 (121)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 387
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=96.59 E-value=0.11 Score=53.45 Aligned_cols=24 Identities=13% Similarity=0.029 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHhcccccc
Q 010712 211 NYITMATEVEKLRAELMNAPNVDR 234 (503)
Q Consensus 211 ~L~sm~rEIekLraELekle~el~ 234 (503)
++.....+++.+++.|+.++..+.
T Consensus 180 ~~~~~~~~~~~~~~~l~~a~~~l~ 203 (327)
T TIGR02971 180 DVDLAQAEVKSALEAVQQAEALLE 203 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556666666666666655543
No 388
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=96.59 E-value=0.26 Score=53.54 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010712 71 RLAATHGTLRQELAAAQHELQI 92 (503)
Q Consensus 71 rLa~e~~~LrqeLa~lq~EL~~ 92 (503)
-+..++..|+.++...+..++.
T Consensus 199 ~l~~~l~~lr~~~~~ae~~~~~ 220 (458)
T COG3206 199 SLDERLEELRARLQEAEAQVED 220 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544443333
No 389
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=96.57 E-value=0.76 Score=44.14 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010712 192 EYEKKFYNDHLESLQVMEKNYI 213 (503)
Q Consensus 192 e~ekk~~~el~eqlqemEk~L~ 213 (503)
+..++.+.+..+.+.+.+.+..
T Consensus 148 ~~~~~~l~~~lekL~~fd~~~~ 169 (204)
T PF04740_consen 148 EKAKKKLQETLEKLRAFDQQSS 169 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH
Confidence 3333334444444444444333
No 390
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.57 E-value=0.41 Score=48.49 Aligned_cols=27 Identities=7% Similarity=0.139 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712 205 LQVMEKNYITMATEVEKLRAELMNAPN 231 (503)
Q Consensus 205 lqemEk~L~sm~rEIekLraELekle~ 231 (503)
.+=+-..+.....|++-.+-.|.|.+.
T Consensus 227 NkfLhaklkiadeElEliK~siaKYKq 253 (389)
T KOG4687|consen 227 NKFLHAKLKIADEELELIKMSIAKYKQ 253 (389)
T ss_pred hHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 333444444455666666655555433
No 391
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=96.57 E-value=0.88 Score=44.79 Aligned_cols=31 Identities=6% Similarity=0.138 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGTL 79 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~L 79 (503)
...+.++..++.+..+|..+.......+..|
T Consensus 15 e~~e~~f~~~e~~~~kL~k~~K~Y~~av~~m 45 (211)
T cd07588 15 DEHVNNFNKQQASANRLQKDLKNYLNSVRAM 45 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666665555544444
No 392
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=96.57 E-value=0.037 Score=48.68 Aligned_cols=23 Identities=13% Similarity=0.316 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010712 132 FQKSKTEAQNLVVAREELIAKVH 154 (503)
Q Consensus 132 LeqLraELqqL~~erqeLe~qiq 154 (503)
++.++.+++.+...++.|+.++.
T Consensus 12 ~q~~q~~~~~l~~q~~~le~~~~ 34 (110)
T TIGR02338 12 LQQLQQQLQAVATQKQQVEAQLK 34 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444433333333333
No 393
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=96.57 E-value=0.34 Score=48.86 Aligned_cols=46 Identities=15% Similarity=0.371 Sum_probs=27.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010712 125 AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI 170 (503)
Q Consensus 125 le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi 170 (503)
++.+..++++++..|..+......|..+|+.-+.+|+++++.++.+
T Consensus 114 Iq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~L 159 (338)
T KOG3647|consen 114 IQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEAL 159 (338)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555556666666666666666666666666666666655544
No 394
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=96.56 E-value=0.025 Score=49.26 Aligned_cols=27 Identities=7% Similarity=0.224 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 202 LESLQVMEKNYITMATEVEKLRAELMN 228 (503)
Q Consensus 202 ~eqlqemEk~L~sm~rEIekLraELek 228 (503)
...++.+++++..+.+++.+++.+|.+
T Consensus 76 e~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 76 ELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444
No 395
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=96.55 E-value=0.0034 Score=64.97 Aligned_cols=45 Identities=7% Similarity=0.035 Sum_probs=16.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712 187 CRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (503)
Q Consensus 187 lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~ 231 (503)
....|..++..+..+...+..|...+..+.-.|..|+..|.++|.
T Consensus 110 h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs 154 (326)
T PF04582_consen 110 HSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALES 154 (326)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhc
Confidence 333333333333333444444444444444444444445554444
No 396
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=96.54 E-value=0.065 Score=47.13 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 136 KTEAQNLVVAREELIAKVHQLTQDL 160 (503)
Q Consensus 136 raELqqL~~erqeLe~qiq~L~~EL 160 (503)
-.+++.++.+++.+..+++.|+.++
T Consensus 9 ~~~~q~~q~~~~~l~~q~~~le~~~ 33 (110)
T TIGR02338 9 LAQLQQLQQQLQAVATQKQQVEAQL 33 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 397
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=1.6 Score=47.34 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 52 EQKIASQHVEMQKLATENQRLAATHG 77 (503)
Q Consensus 52 EqeIe~~~~EIq~Le~enqrLa~e~~ 77 (503)
+...+.....++.++.+-++|..++.
T Consensus 29 D~~FE~~~~~f~~~e~e~~kLqkd~k 54 (460)
T KOG3771|consen 29 DEQFEQEERNFNKQEAEGKRLQKDLK 54 (460)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555554443
No 398
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.51 E-value=0.21 Score=54.74 Aligned_cols=28 Identities=18% Similarity=0.082 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 135 SKTEAQNLVVAREELIAKVHQLTQDLQR 162 (503)
Q Consensus 135 LraELqqL~~erqeLe~qiq~L~~ELqr 162 (503)
+++|++.+..+.+.|.+.|+.++....+
T Consensus 660 Fk~Elq~~~~~~~~L~~~iET~~~~~~K 687 (741)
T KOG4460|consen 660 FKKELQLIPDQLRHLGNAIETVTMKKDK 687 (741)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 399
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=96.51 E-value=0.25 Score=45.63 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 010712 107 QMRNLTEKIAKMEA 120 (503)
Q Consensus 107 el~eL~eki~kLEa 120 (503)
++..+..+|+....
T Consensus 85 Ev~~vRkkID~vNr 98 (159)
T PF04949_consen 85 EVEMVRKKIDSVNR 98 (159)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 400
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=96.51 E-value=0.11 Score=49.20 Aligned_cols=66 Identities=12% Similarity=0.124 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 010712 132 FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFY 198 (503)
Q Consensus 132 LeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~ 198 (503)
+..|..++..+.+++++|...+..++.+|..|.+-+ -+++++.+|.+|+.|+...+..|+.++...
T Consensus 81 l~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~L-t~eemQe~i~~L~kev~~~~erl~~~k~g~ 146 (201)
T KOG4603|consen 81 LQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSAL-TTEEMQEEIQELKKEVAGYRERLKNIKAGT 146 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444444444444444444444444333322 134556666666666666666666665544
No 401
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.51 E-value=0.091 Score=59.30 Aligned_cols=86 Identities=14% Similarity=0.156 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----------HH-HHHHHHHHHHHHHHHHhhHHHH
Q 010712 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI-----------PA-LLSELESLRQEYHHCRGTYEYE 194 (503)
Q Consensus 127 ~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi-----------~~-l~~EIe~L~qELq~lR~ele~e 194 (503)
.|+.++..+...+..+..+..+-..++.++..+|+++-.++..- .+ ...+++.++.+|..|+.++..-
T Consensus 100 tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~R 179 (660)
T KOG4302|consen 100 TLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDR 179 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666666666666666666666666555544321 11 2356777788887777776666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010712 195 KKFYNDHLESLQVMEKNY 212 (503)
Q Consensus 195 kk~~~el~eqlqemEk~L 212 (503)
.+++.++++.+..+-+.|
T Consensus 180 lekv~~~~~~I~~l~~~L 197 (660)
T KOG4302|consen 180 LEKVLELKEEIKSLCSVL 197 (660)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 666666666666665555
No 402
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.50 E-value=0.82 Score=43.59 Aligned_cols=65 Identities=18% Similarity=0.341 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 010712 139 AQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPA----LLSELESLRQEYHHCRGTYEYEKKFYNDHLE 203 (503)
Q Consensus 139 LqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~----l~~EIe~L~qELq~lR~ele~ekk~~~el~e 203 (503)
+..+-..|..+..+++.+...+.+.+.++.++.. -...|+.++.+|..++.+++.++..++.+..
T Consensus 105 ~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~ 173 (218)
T cd07596 105 VKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISE 173 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444555555555555444444332 2345666666666666666666655554443
No 403
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=96.50 E-value=0.26 Score=50.58 Aligned_cols=16 Identities=25% Similarity=0.142 Sum_probs=8.9
Q ss_pred HHHHHHHHhccccccc
Q 010712 220 EKLRAELMNAPNVDRR 235 (503)
Q Consensus 220 ekLraELekle~el~~ 235 (503)
++|+-.|..|+..|+.
T Consensus 146 eK~klRLK~LEe~Lk~ 161 (351)
T PF07058_consen 146 EKLKLRLKVLEEGLKG 161 (351)
T ss_pred HHHHHHHHHHHhhccC
Confidence 4455555566666654
No 404
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=96.46 E-value=0.78 Score=48.18 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 176 ELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVE 220 (503)
Q Consensus 176 EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIe 220 (503)
++.+++.++..++..++.+++.+++...+.+.++.++..++..++
T Consensus 236 ~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~ 280 (344)
T PF12777_consen 236 QLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLE 280 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 344444444444444444444444444444444444333333333
No 405
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=96.45 E-value=0.065 Score=48.85 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 193 YEKKFYNDHLESLQVMEKNYITMATEVEKLRAE 225 (503)
Q Consensus 193 ~ekk~~~el~eqlqemEk~L~sm~rEIekLraE 225 (503)
.+.+.+..+.+.+..+.+++..+...++++..+
T Consensus 105 ~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 105 ELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444445555555555555555444
No 406
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=96.45 E-value=0.98 Score=44.89 Aligned_cols=11 Identities=27% Similarity=0.459 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 010712 204 SLQVMEKNYIT 214 (503)
Q Consensus 204 qlqemEk~L~s 214 (503)
.+++++.....
T Consensus 209 ~~q~le~~ri~ 219 (251)
T cd07653 209 KLQELDEKRIN 219 (251)
T ss_pred HHHHHhHHHHH
Confidence 34444444433
No 407
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=96.44 E-value=1.8 Score=46.78 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010712 102 SERELQMRNLTEKIAKMEAELKT 124 (503)
Q Consensus 102 ae~E~el~eL~eki~kLEaEL~~ 124 (503)
.+.+.-+++|++.+..++.....
T Consensus 251 ~El~~V~~el~~~~~~~~~~~~~ 273 (412)
T PF04108_consen 251 QELPDVVKELQERLDEMENNEER 273 (412)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566666666666665444
No 408
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=96.43 E-value=0.083 Score=55.07 Aligned_cols=10 Identities=10% Similarity=0.408 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 010712 54 KIASQHVEMQ 63 (503)
Q Consensus 54 eIe~~~~EIq 63 (503)
++...+.++.
T Consensus 87 ~l~~a~a~l~ 96 (346)
T PRK10476 87 TVAQAQADLA 96 (346)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 409
>COG5293 Predicted ATPase [General function prediction only]
Probab=96.43 E-value=0.64 Score=50.19 Aligned_cols=16 Identities=13% Similarity=0.059 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHH
Q 010712 48 PEVMEQKIASQHVEMQ 63 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq 63 (503)
.+.+-++|+.+..++.
T Consensus 195 ~~~~~dKi~~l~s~kK 210 (591)
T COG5293 195 AAEYYDKIQELESKKK 210 (591)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556666666665544
No 410
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=96.42 E-value=0.61 Score=52.22 Aligned_cols=14 Identities=7% Similarity=-0.042 Sum_probs=5.9
Q ss_pred HHHHHHHHhccccc
Q 010712 220 EKLRAELMNAPNVD 233 (503)
Q Consensus 220 ekLraELekle~el 233 (503)
.+|..-+..|+..+
T Consensus 408 ~~l~~a~~~l~~~l 421 (582)
T PF09731_consen 408 QQLWLAVDALKSAL 421 (582)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444444
No 411
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.41 E-value=0.71 Score=46.64 Aligned_cols=31 Identities=16% Similarity=0.063 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 198 YNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (503)
Q Consensus 198 ~~el~eqlqemEk~L~sm~rEIekLraELek 228 (503)
+-++...+|+|++..+..-.|+-++-++|++
T Consensus 204 mP~vfd~lQ~leE~Ri~~l~e~~~~~~~~E~ 234 (252)
T cd07675 204 IPQIYKQLQEMDERRTVKLSECYRGFADSER 234 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777888888888888888877777775
No 412
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=96.40 E-value=0.077 Score=48.10 Aligned_cols=54 Identities=9% Similarity=0.211 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 106 LQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR 162 (503)
Q Consensus 106 ~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqr 162 (503)
.+|..|..++++..+ ..+.++.|+..++.++.++..+...+...+..|+..|..
T Consensus 68 qRId~vd~klDe~~e---i~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ 121 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKE---ISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDE 121 (126)
T ss_pred HHHHHHHhhHHHHHH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433332 223344455555555555555555555555555444443
No 413
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=0.43 Score=48.63 Aligned_cols=60 Identities=12% Similarity=0.092 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 010712 177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRA 236 (503)
Q Consensus 177 Ie~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~~~ 236 (503)
|++-.+++.+++..|-.+..-+.++-.-+.+--+.+.+.+..|+....-++.....|++|
T Consensus 175 ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA 234 (269)
T KOG0811|consen 175 IEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKA 234 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666677776666666666666666666777788888888888888888777664
No 414
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=96.38 E-value=0.3 Score=49.80 Aligned_cols=14 Identities=36% Similarity=0.688 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 010712 173 LLSELESLRQEYHH 186 (503)
Q Consensus 173 l~~EIe~L~qELq~ 186 (503)
+..||+.+++|+++
T Consensus 313 Vm~e~E~~KqemEe 326 (384)
T KOG0972|consen 313 VMDEIEQLKQEMEE 326 (384)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 415
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=96.38 E-value=0.093 Score=53.10 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccch
Q 010712 71 RLAATHGTLRQELAAAQHELQILHGQIGGMK 101 (503)
Q Consensus 71 rLa~e~~~LrqeLa~lq~EL~~L~~qL~~lk 101 (503)
.|.+.+.+-...|..-..||..|+.+|..++
T Consensus 72 HLkakLkes~~~l~dRetEI~eLksQL~RMr 102 (305)
T PF15290_consen 72 HLKAKLKESENRLHDRETEIDELKSQLARMR 102 (305)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3333333333444444455555555554433
No 416
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=96.37 E-value=0.056 Score=53.10 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712 173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 173 l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el 233 (503)
+..|.+.+..+++.++.+++..++.++...++..++.++.+.+.+|.+.|.+|-.++++++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555555555555555555555555555555555544
No 417
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=96.37 E-value=0.96 Score=46.83 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010712 53 QKIASQHVEMQKLATENQRLA 73 (503)
Q Consensus 53 qeIe~~~~EIq~Le~enqrLa 73 (503)
|+.++.+.+-..+...+.++.
T Consensus 41 Q~~EQAr~~A~~fA~~ld~~~ 61 (301)
T PF06120_consen 41 QNAEQARQEAIEFADSLDELK 61 (301)
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 334444444333333333333
No 418
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.28 Score=54.07 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTL 79 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~L 79 (503)
...++-+++-+...|.+++.++..|...+..|
T Consensus 334 ~~~~~~~~~~~~Tr~Er~Er~~D~L~rri~~~ 365 (852)
T KOG4787|consen 334 LELAESQVQHLNTKIERLEKTNDHLNKKIVEL 365 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34445555555555555555554444444444
No 419
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.085 Score=57.68 Aligned_cols=8 Identities=13% Similarity=0.260 Sum_probs=3.0
Q ss_pred HHHHHhhh
Q 010712 89 ELQILHGQ 96 (503)
Q Consensus 89 EL~~L~~q 96 (503)
+|+.++++
T Consensus 603 ~l~~~~ee 610 (741)
T KOG4460|consen 603 DLSYCREE 610 (741)
T ss_pred HHHHHHHH
Confidence 33333333
No 420
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=96.34 E-value=0.41 Score=49.53 Aligned_cols=11 Identities=18% Similarity=0.404 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 010712 72 LAATHGTLRQE 82 (503)
Q Consensus 72 La~e~~~Lrqe 82 (503)
++..++.++.+
T Consensus 53 fA~~ld~~~~k 63 (301)
T PF06120_consen 53 FADSLDELKEK 63 (301)
T ss_pred HHHhhHHHHHH
Confidence 33333333333
No 421
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=96.34 E-value=0.073 Score=45.59 Aligned_cols=11 Identities=9% Similarity=0.138 Sum_probs=4.0
Q ss_pred HHHHHHHHHhh
Q 010712 180 LRQEYHHCRGT 190 (503)
Q Consensus 180 L~qELq~lR~e 190 (503)
|..+++.+..+
T Consensus 67 L~~~~~~~~~~ 77 (106)
T PF01920_consen 67 LEERIEKLEKE 77 (106)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 422
>PLN03188 kinesin-12 family protein; Provisional
Probab=96.32 E-value=1.2 Score=53.64 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 010712 77 GTLRQELAAAQHELQILHGQI 97 (503)
Q Consensus 77 ~~LrqeLa~lq~EL~~L~~qL 97 (503)
+.|+.||..-+.--+.|+..+
T Consensus 1082 Ekl~~EL~~eK~c~eel~~a~ 1102 (1320)
T PLN03188 1082 EKQKHELDTEKRCAEELKEAM 1102 (1320)
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 445555555444444444433
No 423
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=96.32 E-value=2 Score=48.69 Aligned_cols=187 Identities=16% Similarity=0.193 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccchHHHHHHHHHHHHHH-HHHHHHHHH
Q 010712 47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQ-IGGMKSERELQMRNLTEKI-AKMEAELKT 124 (503)
Q Consensus 47 ~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~q-L~~lkae~E~el~eL~eki-~kLEaEL~~ 124 (503)
+.+...++-+....-++.++...++...+...++...+.--..|++-+++ |+.+..+.+.+++.-..+| -.-+.++.+
T Consensus 803 QkeE~R~qqqL~~k~~~q~Eq~~rrFeqE~~~kkr~~d~EmenlErqQkq~iE~~Eq~h~~rlR~eakRir~EQekd~~~ 882 (1187)
T KOG0579|consen 803 QKEEARQQQQLQAKGIKQVEQQARRFEQEQTNKKRTSDLEMENLERQQKQEIEDTEQAHEHRLRNEAKRIRIEQEKDMRA 882 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q ss_pred Hh-HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH-HHHHHhhh------------hhHHHHHHHHHHH
Q 010712 125 AE-PVKLEFQKSKTEAQ---------NLVVAREELIAKVHQLTQDL-QRAHTDVQ------------QIPALLSELESLR 181 (503)
Q Consensus 125 le-~Lk~ELeqLraELq---------qL~~erqeLe~qiq~L~~EL-qrlk~elq------------qi~~l~~EIe~L~ 181 (503)
++ .|+.+....+.||. .++....+++.+.+-++.+. .+++++++ ++..+..|.---+
T Consensus 883 Fqe~LK~~kKe~k~e~~~l~k~qrkdalkqr~eq~~~~~ql~ekdFv~kqqq~le~~lkrm~~~~k~ema~iErecLm~K 962 (1187)
T KOG0579|consen 883 FQERLKQEKKEFKQELTMLSKVQRKDALKQRKEQIEIEHQLKEKDFVMKQQQNLEAMLKRMAEKHKEEMASIERECLMQK 962 (1187)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHHHHh------hHHHHHHHHHHHHHH------------HHHHHHHHHHH----HHHHHHHHHHHHhccccc
Q 010712 182 QEYHHCRG------TYEYEKKFYNDHLES------------LQVMEKNYITM----ATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 182 qELq~lR~------ele~ekk~~~el~eq------------lqemEk~L~sm----~rEIekLraELekle~el 233 (503)
++|-++|. +-..++.+..-++++ |...++++..| +++|+.|...+..-+++|
T Consensus 963 q~LlRarEaaiWElEe~qlqEkhqL~kqqlKDqYflqRhqlL~rHekE~eQmqrynQr~ie~Lk~rqtqerarL 1036 (1187)
T KOG0579|consen 963 QNLLRAREAAIWELEEKQLQEKHQLHKQQLKDQYFLQRHQLLARHEKEMEQMQRYNQREIEDLKRRQTQERARL 1036 (1187)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 424
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=96.29 E-value=0.035 Score=52.32 Aligned_cols=59 Identities=22% Similarity=0.250 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHH
Q 010712 136 KTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEK 195 (503)
Q Consensus 136 raELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ek 195 (503)
..++.+|+.++.+|..++..|+.+|..+..... ..++..+|..|+.|+..++..|+.++
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t-~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSSEPT-NEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444433321 12344445555555555555544444
No 425
>COG5293 Predicted ATPase [General function prediction only]
Probab=96.28 E-value=0.35 Score=52.14 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010712 53 QKIASQHVEMQKLATENQRLAAT 75 (503)
Q Consensus 53 qeIe~~~~EIq~Le~enqrLa~e 75 (503)
..+....++|+.|..+. +|++.
T Consensus 193 ~~~~~~~dKi~~l~s~k-Kl~e~ 214 (591)
T COG5293 193 KCAAEYYDKIQELESKK-KLAEL 214 (591)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHH
Confidence 34777788888777654 44443
No 426
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=96.25 E-value=0.0076 Score=63.91 Aligned_cols=38 Identities=18% Similarity=0.326 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 010712 198 YNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRR 235 (503)
Q Consensus 198 ~~el~eqlqemEk~L~sm~rEIekLraELekle~el~~ 235 (503)
+.++...+.+++..+..+++++..|...|+.++++.++
T Consensus 153 is~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRR 190 (370)
T PF02994_consen 153 ISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRR 190 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 33334444444444555555555666666666555543
No 427
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=96.25 E-value=0.35 Score=43.01 Aligned_cols=28 Identities=14% Similarity=0.318 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 200 DHLESLQVMEKNYITMATEVEKLRAELM 227 (503)
Q Consensus 200 el~eqlqemEk~L~sm~rEIekLraELe 227 (503)
....++..+...+..|..++.++...|.
T Consensus 78 ~k~~ei~~l~~~l~~l~~~~~k~e~~l~ 105 (126)
T PF13863_consen 78 EKEAEIKKLKAELEELKSEISKLEEKLE 105 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444443333
No 428
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=96.24 E-value=0.055 Score=48.06 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712 192 EYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229 (503)
Q Consensus 192 e~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekl 229 (503)
+.+++.++.+.+++.++++++..+..++.+++..|..+
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 90 EFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555556666666666666666666665543
No 429
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=96.24 E-value=0.0054 Score=58.75 Aligned_cols=69 Identities=19% Similarity=0.163 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---ccchHHHHHHHHHHHHHHHHHHHH
Q 010712 53 QKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI---GGMKSERELQMRNLTEKIAKMEAE 121 (503)
Q Consensus 53 qeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL---~~lkae~E~el~eL~eki~kLEaE 121 (503)
+-+..+...|+.|..++++|..++..|.++-+.+..++......+ ......++.+++.|+..+..++.+
T Consensus 8 q~~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~Lqfl~~~~r~d 79 (181)
T PF09311_consen 8 QVMRALQQHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVKHLQFLVSIKRED 79 (181)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHT--------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHHHHHHHhcccc
Confidence 334455666777777777777777777777777777777666666 333334445555555544444433
No 430
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.095 Score=48.61 Aligned_cols=44 Identities=16% Similarity=0.259 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010712 189 GTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNV 232 (503)
Q Consensus 189 ~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~e 232 (503)
..++.+++.++++.+.+++|+++|..+.+.+..+..++..+..+
T Consensus 94 eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~ 137 (145)
T COG1730 94 EAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQK 137 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666666666666666666666655443
No 431
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=96.23 E-value=0.13 Score=48.44 Aligned_cols=131 Identities=15% Similarity=0.206 Sum_probs=0.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHH
Q 010712 44 MMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK 123 (503)
Q Consensus 44 ~~p~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~ 123 (503)
++|-+-.+=+.|+.+..+-+....+...|..+...|..+....+......+..+..+...++.+.++|..++..|+++.+
T Consensus 27 LmP~VV~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r 106 (158)
T PF09744_consen 27 LMPKVVRVLELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENR 106 (158)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHH
Q 010712 124 TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQ-IPALLSELESLRQEY 184 (503)
Q Consensus 124 ~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqq-i~~l~~EIe~L~qEL 184 (503)
. |...++.+......|+.+-..|+.+...+.....+ +..++.-|+..+.++
T Consensus 107 ~----------L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~e~ver~k~~~ 158 (158)
T PF09744_consen 107 Q----------LELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLKEHVERQKDEI 158 (158)
T ss_pred H----------HHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 432
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=96.23 E-value=1.1 Score=42.22 Aligned_cols=35 Identities=31% Similarity=0.386 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010712 62 MQKLATENQRLAATHGTLRQELAAAQHELQILHGQ 96 (503)
Q Consensus 62 Iq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~q 96 (503)
|+......++|.+.+..++..|+.+..++.....+
T Consensus 10 ~~rr~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~ 44 (158)
T PF09486_consen 10 IQRRRRRERRLRARLAAQRRALAAAEAELAEQQAE 44 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555655555555555444333
No 433
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=96.22 E-value=0.28 Score=53.10 Aligned_cols=11 Identities=27% Similarity=0.419 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 010712 82 ELAAAQHELQI 92 (503)
Q Consensus 82 eLa~lq~EL~~ 92 (503)
+++.++.++..
T Consensus 250 ev~~Ae~rl~~ 260 (434)
T PRK15178 250 DVKSAQENLGA 260 (434)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 434
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=96.22 E-value=1.2 Score=47.97 Aligned_cols=169 Identities=14% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 010712 64 KLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLV 143 (503)
Q Consensus 64 ~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~ 143 (503)
.|+.+..++.+.-..+-.--+.++-+|+.-+...++++.+++.+-+--.+.-+.|+.-+.-...+...-..|+.....|.
T Consensus 278 ~le~er~~wtE~ES~WIsLteeLR~dle~~r~~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~~Ll 357 (488)
T PF06548_consen 278 ELEQERQRWTEAESKWISLTEELRVDLESSRSLAEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYADLQEKHNDLL 357 (488)
T ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHhhHHHHHH---------------------HHH
Q 010712 144 VAREELIAKVHQLTQDLQRAHTDVQQ---IPALLSELESLRQEYHHCRGTYEYEKK---------------------FYN 199 (503)
Q Consensus 144 ~erqeLe~qiq~L~~ELqrlk~elqq---i~~l~~EIe~L~qELq~lR~ele~ekk---------------------~~~ 199 (503)
.....+..-|..++....+.-..-.. +..+-+||..|+.|-++=|.-+..+.+ .+.
T Consensus 358 ~~Hr~i~egI~dVKkaAakAg~kG~~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~ 437 (488)
T PF06548_consen 358 ARHRRIMEGIEDVKKAAAKAGVKGAESRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLR 437 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010712 200 DHLESLQVMEKNYITMATEVEKLRAELMNAPNV 232 (503)
Q Consensus 200 el~eqlqemEk~L~sm~rEIekLraELekle~e 232 (503)
+..+.....+++...+++|-+++..+++||++.
T Consensus 438 eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~k 470 (488)
T PF06548_consen 438 EAEEAASVAQERAMDAEQENEKAKKQIEKLKRK 470 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 435
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=96.22 E-value=0.14 Score=55.18 Aligned_cols=15 Identities=33% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q 010712 59 HVEMQKLATENQRLA 73 (503)
Q Consensus 59 ~~EIq~Le~enqrLa 73 (503)
..||+.|..++.-|.
T Consensus 150 ~~Ev~~LRreLavLR 164 (424)
T PF03915_consen 150 LKEVQSLRRELAVLR 164 (424)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 436
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=96.19 E-value=1 Score=45.62 Aligned_cols=16 Identities=31% Similarity=0.561 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 010712 107 QMRNLTEKIAKMEAEL 122 (503)
Q Consensus 107 el~eL~eki~kLEaEL 122 (503)
+++.|..++..|+.+.
T Consensus 145 ~L~~ll~~l~~l~~eR 160 (296)
T PF13949_consen 145 QLRELLNKLEELKKER 160 (296)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 437
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=96.19 E-value=1.6 Score=43.70 Aligned_cols=64 Identities=8% Similarity=0.026 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 010712 139 AQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPA--LLSELESLRQEYHHCRGTYEYEKKFYNDHL 202 (503)
Q Consensus 139 LqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~--l~~EIe~L~qELq~lR~ele~ekk~~~el~ 202 (503)
++.+-.+|..+-...+.+..+|++.+..+.++.. ....+..++.|+.+++...+..++.++++.
T Consensus 121 VK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~~a~~Ev~e~e~k~~~a~~~fe~is 186 (234)
T cd07665 121 VRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANKPDKLQQAKDEIAEWESRVTQYERDFERIS 186 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443333332211 112344455555555555555555444433
No 438
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=96.19 E-value=1.9 Score=44.58 Aligned_cols=13 Identities=15% Similarity=0.304 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHh
Q 010712 216 ATEVEKLRAELMN 228 (503)
Q Consensus 216 ~rEIekLraELek 228 (503)
-+.|+.+..+|..
T Consensus 217 lrnLE~ISd~IHe 229 (426)
T KOG2008|consen 217 LRNLEMISDEIHE 229 (426)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 439
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=96.17 E-value=0.1 Score=47.35 Aligned_cols=32 Identities=13% Similarity=0.218 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLT 157 (503)
Q Consensus 126 e~Lk~ELeqLraELqqL~~erqeLe~qiq~L~ 157 (503)
..++.++.+++.+++.++.....|+.++.+|+
T Consensus 92 ~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 92 TEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666666666666666666666666554
No 440
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=96.17 E-value=1.3 Score=47.88 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHhcccccc
Q 010712 213 ITMATEVEKLRAELMNAPNVDR 234 (503)
Q Consensus 213 ~sm~rEIekLraELekle~el~ 234 (503)
..|++-+.++..+|+++..+..
T Consensus 363 ~k~~~i~~~~~eeL~~l~eeE~ 384 (412)
T PF04108_consen 363 DKMKKIIREANEELDKLREEEQ 384 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888888888777654
No 441
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=96.16 E-value=1.3 Score=44.34 Aligned_cols=19 Identities=11% Similarity=0.354 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 010712 48 PEVMEQKIASQHVEMQKLA 66 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le 66 (503)
+..+|+.|......|-..-
T Consensus 42 ~~eiE~~Lk~KC~~Lls~~ 60 (238)
T PF14735_consen 42 PREIEERLKKKCFSLLSYH 60 (238)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 6888988888877776543
No 442
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=96.15 E-value=0.033 Score=52.07 Aligned_cols=13 Identities=15% Similarity=0.394 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 010712 108 MRNLTEKIAKMEA 120 (503)
Q Consensus 108 l~eL~eki~kLEa 120 (503)
+++|++.+..++.
T Consensus 64 L~~Le~~~~~~~~ 76 (160)
T PF13094_consen 64 LQELEKNAKALER 76 (160)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444333
No 443
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=96.14 E-value=1 Score=42.44 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcc
Q 010712 77 GTLRQELAAAQHELQILHGQIGG 99 (503)
Q Consensus 77 ~~LrqeLa~lq~EL~~L~~qL~~ 99 (503)
..|+..|..++.++..+...+.+
T Consensus 18 ~rL~~~L~~~r~al~~~~a~~~~ 40 (158)
T PF09486_consen 18 RRLRARLAAQRRALAAAEAELAE 40 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554444433
No 444
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=96.13 E-value=0.38 Score=50.54 Aligned_cols=29 Identities=24% Similarity=0.210 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712 69 NQRLAATHGTLRQELAAAQHELQILHGQI 97 (503)
Q Consensus 69 nqrLa~e~~~LrqeLa~lq~EL~~L~~qL 97 (503)
.+.+..+++.+.++...+.+||+..+..+
T Consensus 148 lq~~~~~~er~~~~y~~~~qElq~k~t~~ 176 (464)
T KOG4637|consen 148 LQEKSLEYERLYEEYTRTSQELQMKRTAI 176 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444555555444443
No 445
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.13 E-value=1.6 Score=43.04 Aligned_cols=30 Identities=3% Similarity=0.084 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 52 EQKIASQHVEMQKLATENQRLAATHGTLRQ 81 (503)
Q Consensus 52 EqeIe~~~~EIq~Le~enqrLa~e~~~Lrq 81 (503)
|++.....+.|..|+..+.+|-..+..|-.
T Consensus 3 ~~~~k~i~~~i~~lE~hl~~l~~~~~~lv~ 32 (211)
T cd07598 3 DNQTKFIQERITNVEKHFGELCQDFAAYTR 32 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555554444444433
No 446
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=96.12 E-value=0.15 Score=52.49 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQ 81 (503)
Q Consensus 50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~Lrq 81 (503)
.++.+++..+.++..++.+...+..++..++.
T Consensus 77 ~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~ 108 (334)
T TIGR00998 77 NAELALAKAEANLAALVRQTKQLEITVQQLQA 108 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444444444443333333
No 447
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=96.12 E-value=0.19 Score=57.88 Aligned_cols=14 Identities=0% Similarity=0.055 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 010712 204 SLQVMEKNYITMAT 217 (503)
Q Consensus 204 qlqemEk~L~sm~r 217 (503)
+.+++-+.+..+.+
T Consensus 168 ~~~~~ld~I~~~RR 181 (835)
T COG3264 168 EVRDILDQILDTRR 181 (835)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 448
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=96.11 E-value=0.29 Score=48.32 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 128 VKLEFQKSKTEAQNLVVAREELIA 151 (503)
Q Consensus 128 Lk~ELeqLraELqqL~~erqeLe~ 151 (503)
++++|..++.+++.+...|+..+.
T Consensus 148 le~~l~~~k~~ie~vN~~RK~~Q~ 171 (221)
T PF05700_consen 148 LEKELAKLKKEIEEVNRERKRRQE 171 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555554444433
No 449
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=96.11 E-value=0.73 Score=43.82 Aligned_cols=167 Identities=14% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 010712 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKL 130 (503)
Q Consensus 51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ 130 (503)
++.+++.+..++..++....+|...+....+.+..+......+. .....|..-+..+-.+......+..
T Consensus 24 ~D~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~l~~~~~~~~~~~~~~~ 92 (229)
T PF03114_consen 24 IDEEFEELEEKFKQLEESIKKLQKSLKKYLDSIKKLSASQKNMK-----------SPFEELADALIELGSEFSDDSSLGN 92 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHT-----------HHHHHHHHHHHHHHHCTSTTCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhh-----------HHHHHHHHHHHHHhccccccchhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 010712 131 EFQKSKTEAQNLVVAREELIAKVHQ-LTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVME 209 (503)
Q Consensus 131 ELeqLraELqqL~~erqeLe~qiq~-L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemE 209 (503)
-+..+..-++.+.....++...++. +..-|.++..+++.+....++.+...-+++.++..++..++....... -++++
T Consensus 93 ~l~~~~~~~~~i~~~~~~~~~~~~~~vi~pl~~~~~~~~~i~~~~kkr~~~~ldyd~~~~k~~k~~~~~~~~~~-~~~l~ 171 (229)
T PF03114_consen 93 ALEKFGEAMQEIEEARKELESQIESTVIDPLKEFLKEFKEIKKLIKKREKKRLDYDSARSKLEKLRKKKSKSSK-EEKLE 171 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTSSBTHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc-HHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 010712 210 KNYITMATEVEKLRAELMNA 229 (503)
Q Consensus 210 k~L~sm~rEIekLraELekl 229 (503)
+.....+..-+.|..+|..+
T Consensus 172 ~a~~~f~~~~~~l~~~l~~l 191 (229)
T PF03114_consen 172 EAKEEFEALNEELKEELPKL 191 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 450
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=96.10 E-value=0.58 Score=47.59 Aligned_cols=80 Identities=14% Similarity=0.210 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Q 010712 149 LIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNY-------ITMATEVEK 221 (503)
Q Consensus 149 Le~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L-------~sm~rEIek 221 (503)
+..+++.++..|..+..+.. .|..+|+..+.||++.++.|+.+++..-..+++...+|.+| ...-+.+.=
T Consensus 174 ~~~~~~~~~~~l~~l~~de~---~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~y 250 (267)
T PF10234_consen 174 VQQQLQQTQQQLNNLASDEA---NLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDY 250 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33344444444444444332 34556777777777777777776654433344444444444 344666666
Q ss_pred HHHHHHhccc
Q 010712 222 LRAELMNAPN 231 (503)
Q Consensus 222 LraELekle~ 231 (503)
|+.+|++..+
T Consensus 251 Le~qle~~~~ 260 (267)
T PF10234_consen 251 LEHQLEEYNR 260 (267)
T ss_pred HHHHHHHHHH
Confidence 6777666544
No 451
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.10 E-value=1.1 Score=45.37 Aligned_cols=31 Identities=26% Similarity=0.210 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 198 YNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (503)
Q Consensus 198 ~~el~eqlqemEk~L~sm~rEIekLraELek 228 (503)
+.++...+|+|++..+..-+++-..-.++++
T Consensus 205 mp~vfd~lQ~lee~Ri~~l~e~l~~~~~~e~ 235 (253)
T cd07676 205 IPNIFQKIQEMEERRIGRVGESMKTYAEVDR 235 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777666666666555554
No 452
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=96.10 E-value=2 Score=44.12 Aligned_cols=15 Identities=33% Similarity=0.519 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHhc
Q 010712 215 MATEVEKLRAELMNA 229 (503)
Q Consensus 215 m~rEIekLraELekl 229 (503)
..++++.|+.||..|
T Consensus 282 ~~~~~~~l~~ei~~L 296 (297)
T PF02841_consen 282 FQEEAEKLQKEIQDL 296 (297)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 355555555555544
No 453
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=96.07 E-value=1.9 Score=43.61 Aligned_cols=26 Identities=31% Similarity=0.472 Sum_probs=14.1
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 010712 54 KIASQHVEM-QKLATENQRLAATHGTL 79 (503)
Q Consensus 54 eIe~~~~EI-q~Le~enqrLa~e~~~L 79 (503)
.|......| ..|..+|++++.-+.+|
T Consensus 108 ~id~~na~i~k~lAeeNqKIq~gi~EL 134 (353)
T PF01540_consen 108 AIDDKNAQIDKKLAEENQKIQNGIEEL 134 (353)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhHHHH
Confidence 344444444 34566666666655544
No 454
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=96.07 E-value=0.55 Score=47.59 Aligned_cols=17 Identities=24% Similarity=-0.029 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhcccccc
Q 010712 218 EVEKLRAELMNAPNVDR 234 (503)
Q Consensus 218 EIekLraELekle~el~ 234 (503)
++..|+.-|+.|.+.+.
T Consensus 207 ~~~~l~eilE~LmN~l~ 223 (268)
T PF11802_consen 207 QLITLREILEILMNKLL 223 (268)
T ss_pred hhhHHHHHHHHHHHHhc
Confidence 45666666666666654
No 455
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.07 E-value=1.7 Score=42.83 Aligned_cols=36 Identities=11% Similarity=0.216 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAA 85 (503)
Q Consensus 50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~ 85 (503)
.+.+.|+.++..+..|-.....|......|+...+.
T Consensus 8 ~i~~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~ 43 (211)
T cd07598 8 FIQERITNVEKHFGELCQDFAAYTRKTARLRDKGDE 43 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 445555555555554444444444444444443333
No 456
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=96.06 E-value=0.76 Score=46.67 Aligned_cols=64 Identities=13% Similarity=0.105 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 010712 172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRR 235 (503)
Q Consensus 172 ~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~~ 235 (503)
.....|...+.|++.+..+++..++.+.++.+++.++..+|..++.+-.+|...|..+...+.+
T Consensus 197 ~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~k 260 (269)
T PF05278_consen 197 EKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEK 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777777777777777777777777777777777777777777766666555543
No 457
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=96.05 E-value=0.14 Score=53.07 Aligned_cols=25 Identities=4% Similarity=0.122 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712 205 LQVMEKNYITMATEVEKLRAELMNA 229 (503)
Q Consensus 205 lqemEk~L~sm~rEIekLraELekl 229 (503)
+..++.++...+.++++++..|+++
T Consensus 180 ~~~~~~~l~~~~~~l~~a~~~l~~~ 204 (331)
T PRK03598 180 IAQAKASLAQAQAALAQAELNLQDT 204 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444445555566666666667654
No 458
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=96.04 E-value=0.52 Score=53.98 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010712 207 VMEKNYITMATEVEKLRAE 225 (503)
Q Consensus 207 emEk~L~sm~rEIekLraE 225 (503)
++.+.++++++.+.+++..
T Consensus 280 q~~~m~esver~~~kl~~~ 298 (683)
T PF08580_consen 280 QAQKMCESVERSLSKLQEA 298 (683)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 3444444455555555554
No 459
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=96.04 E-value=0.52 Score=40.36 Aligned_cols=110 Identities=13% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 010712 119 EAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLT--QDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKK 196 (503)
Q Consensus 119 EaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~--~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk 196 (503)
+.....+..+..++..++..|..|...+.++...+.... ..+..+..-..-+..+...|..++.++..++.+++.++.
T Consensus 1 d~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~ 80 (123)
T PF02050_consen 1 DQAEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQARE 80 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 197 FYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (503)
Q Consensus 197 ~~~el~eqlqemEk~L~sm~rEIekLraELek 228 (503)
.+.+...+.+.++.-+.....+........+.
T Consensus 81 ~l~~a~~~~k~~e~L~e~~~~~~~~~~~r~Eq 112 (123)
T PF02050_consen 81 ELQEARRERKKLEKLKERRREEYQQEEERREQ 112 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 460
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=96.04 E-value=1.3 Score=44.81 Aligned_cols=154 Identities=15% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHH
Q 010712 73 AATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAE---PVKLEFQKSKTEAQNLVVAREEL 149 (503)
Q Consensus 73 a~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le---~Lk~ELeqLraELqqL~~erqeL 149 (503)
..++...+..|...-+|+...+.--.++..---.-.+.|..++--.+.-+.... .|..--.-++.-|+.+..+.+.+
T Consensus 45 ~~~~~q~~~~i~~k~~e~r~~r~lat~l~~~g~~i~e~ls~~~~~~~~~~~aa~Rplel~e~Ekvlk~aIq~i~~~~q~~ 124 (338)
T KOG3647|consen 45 EDQRDQYRSLIGDKIEELRKARELATDLTQRGTTICEMLSKELLHKESLMSAAQRPLELLEVEKVLKSAIQAIQVRLQSS 124 (338)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712 150 IAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229 (503)
Q Consensus 150 e~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekl 229 (503)
..++.....+...|...+++ -+.|++.+++.++.|..--=.--..++.++++++++-+....--+.+.-|+..|+..
T Consensus 125 ~~~Lnnvasdea~L~~Kier---rk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~l~f~nl~yL~~qldd~ 201 (338)
T KOG3647|consen 125 RAQLNNVASDEAALGSKIER---RKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRYFLRFHNLDYLKSQLDDR 201 (338)
T ss_pred HHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
No 461
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=96.03 E-value=1.8 Score=43.03 Aligned_cols=179 Identities=13% Similarity=0.144 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010712 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEP 127 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~ 127 (503)
+..+...+....+++.+.+.....+..++.+- ....+++.|+....+-..++...+..++.++.+-..+.......+.
T Consensus 27 i~si~~n~s~~e~~i~qi~~~h~d~L~Ev~e~--~~~~~~~~ldnf~s~t~~Lq~~~k~di~~~e~~~ihl~~k~aQae~ 104 (280)
T COG5074 27 ILSINKNLSVYEKEINQIDNLHKDLLTEVFEE--QSRKLRRSLDNFSSQTTDLQRNLKKDIKSAERDGIHLANKQAQAEN 104 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhhh----------------hhHHHHHHHHHHH
Q 010712 128 VKLEFQKSKTEAQNLVVAREELIAKVHQL----------TQDLQRAHTDVQ----------------QIPALLSELESLR 181 (503)
Q Consensus 128 Lk~ELeqLraELqqL~~erqeLe~qiq~L----------~~ELqrlk~elq----------------qi~~l~~EIe~L~ 181 (503)
.++.+..+-.+...+.....+-..+.-.+ +.+++..-.+.. +.....+|.++-+
T Consensus 105 ~r~Kf~~~I~~yr~i~~~yree~~e~~rrQy~Ia~P~ATEdeve~aInd~nG~qvfsqalL~anr~geAktaL~Evq~Rh 184 (280)
T COG5074 105 VRQKFLKLIQDYRIIDSNYREEEKEQARRQYIIAQPEATEDEVEAAINDVNGQQVFSQALLNANRRGEAKTALAEVQARH 184 (280)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhcCCccchHHHHHHhcccchHHHHHHHHHhcCccchHHHHHHHHHHHH
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 182 QEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (503)
Q Consensus 182 qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELek 228 (503)
++|.+++..+..+..++.+..+.+.+-+++.+...+.++..+..++.
T Consensus 185 ~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~ 231 (280)
T COG5074 185 QEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQ 231 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHH
No 462
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=96.03 E-value=0.46 Score=48.76 Aligned_cols=141 Identities=16% Similarity=0.163 Sum_probs=0.0
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHH
Q 010712 43 DMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAEL 122 (503)
Q Consensus 43 ~~~p~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL 122 (503)
++.=+...|..+|+.++.|-.-|+.-+++-..+++.|.+-+..+++-|-.--... ..-.+.+.++.+|.+....|+.||
T Consensus 4 d~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaa-NavrdYqrq~~elneEkrtLeREL 82 (351)
T PF07058_consen 4 DVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAA-NAVRDYQRQVQELNEEKRTLEREL 82 (351)
T ss_pred hhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhHHHHHHHHHHHHHH
Q 010712 123 KTAEPVKLEFQKSKTE-----------AQNLVVAREELIAKVHQLTQDL----QRAHTDVQQIPALLSELESLRQEY 184 (503)
Q Consensus 123 ~~le~Lk~ELeqLraE-----------LqqL~~erqeLe~qiq~L~~EL----qrlk~elqqi~~l~~EIe~L~qEL 184 (503)
.+..-.-..+..+-+- +++...++.-|+.++|.|...| ...+.+.|--+.++-.+..|...|
T Consensus 83 ARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAkaEaQLkeK~klRLK~LEe~L 159 (351)
T PF07058_consen 83 ARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERTAKAEAQLKEKLKLRLKVLEEGL 159 (351)
T ss_pred HHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 463
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=96.03 E-value=0.48 Score=44.63 Aligned_cols=137 Identities=15% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010712 52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLE 131 (503)
Q Consensus 52 EqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~E 131 (503)
++-+..+.-.|-+.+..+..+.........++..++.+..+|..+....+......-.+|...-+.++.+.+. |...
T Consensus 21 ~e~v~~LmP~VV~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~---L~~~ 97 (158)
T PF09744_consen 21 EEAVKGLMPKVVRVLELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKD---LQSQ 97 (158)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHhhH
Q 010712 132 FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE-LESLRQEYHHCRGTY 191 (503)
Q Consensus 132 LeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~E-Ie~L~qELq~lR~el 191 (503)
+..++.+.+.|......+..++..|...-..++.+...+.+-..+ |..+..-+++.+-++
T Consensus 98 v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~e~ver~k~~~ 158 (158)
T PF09744_consen 98 VEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLKEHVERQKDEI 158 (158)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 464
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=96.02 E-value=0.34 Score=47.79 Aligned_cols=115 Identities=10% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--HHHHHHHHHHHHh
Q 010712 112 TEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE--LESLRQEYHHCRG 189 (503)
Q Consensus 112 ~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~E--Ie~L~qELq~lR~ 189 (503)
....+.|+.| ++++|+.+.+-+-+.+..+.+.....+.+.+.+...|+....+.......... ++.|+.+|+++..
T Consensus 34 ~~~q~~l~ne--e~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~t 111 (230)
T PF03904_consen 34 QKTQMSLENE--EIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDVDT 111 (230)
T ss_pred HHHHHHHhHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712 190 TYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 190 ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el 233 (503)
+ .....+..++.+..+++++|.+|+.+.....++..+.+
T Consensus 112 d-----e~k~~~~~ei~k~r~e~~~ml~evK~~~E~y~k~~k~~ 150 (230)
T PF03904_consen 112 D-----ELKNIAQNEIKKVREENKSMLQEVKQSHEKYQKRQKSM 150 (230)
T ss_pred H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 465
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=95.99 E-value=0.47 Score=48.82 Aligned_cols=125 Identities=13% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 010712 103 ERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQ 182 (503)
Q Consensus 103 e~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~q 182 (503)
+.+.++..++.++..+++ .+..++.++.+++.++..++..+...+.++...+.++++.+.-.++-..-+.+++..+.
T Consensus 77 ~~~~~l~~a~a~l~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~a~~ 153 (334)
T TIGR00998 77 NAELALAKAEANLAALVR---QTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVPLFKKGLISREELDHARK 153 (334)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHCCCcCHHHHHHHHH
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhcc
Q 010712 183 EYHHCRGTYEYEKKFYNDHLESLQ-----VMEKNYITMATEVEKLRAELMNAP 230 (503)
Q Consensus 183 ELq~lR~ele~ekk~~~el~eqlq-----emEk~L~sm~rEIekLraELekle 230 (503)
++..++.+++..+.........+. ..+.++..++.+++.++..|+++.
T Consensus 154 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~~~l~~~~ 206 (334)
T TIGR00998 154 ALLSAKAALNAAIQEQLNANQALVRGTPLKKQPAVQEAKERLKTAWLALKRTV 206 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhCcE
No 466
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=95.97 E-value=2.2 Score=43.37 Aligned_cols=189 Identities=14% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhhhccchH--------HHHHHHHHHHHH
Q 010712 51 MEQKIASQHVEMQKLATENQRLAATHGTL--------RQELAAAQHELQILHGQIGGMKS--------ERELQMRNLTEK 114 (503)
Q Consensus 51 LEqeIe~~~~EIq~Le~enqrLa~e~~~L--------rqeLa~lq~EL~~L~~qL~~lka--------e~E~el~eL~ek 114 (503)
..+..+.+.+|...+=.+..+++..+.-. ..+|..+..++..|.+++.+.+. ..+.-+...++.
T Consensus 14 ~~~~~~~l~~eCEe~wk~me~~q~kL~l~~~e~l~~s~~ql~ll~~~~k~L~aE~~qwqk~~peii~~n~~VL~~lgkee 93 (268)
T PF11802_consen 14 VTDAKEELIKECEELWKDMEECQNKLSLIGTETLTDSDAQLSLLMMRVKCLTAELEQWQKRTPEIIPLNPEVLLTLGKEE 93 (268)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHHHHHH
Q ss_pred HHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHH
Q 010712 115 IAKMEAELKT-AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEY 193 (503)
Q Consensus 115 i~kLEaEL~~-le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ 193 (503)
+.++..+++. +..++.+.+.++.++...+.-+.+.+.-+..|.....+++.+.....+ ..-+.+++..+.+++...+.
T Consensus 94 lqkl~~eLe~vLs~~q~KnekLke~LerEq~wL~Eqqql~~sL~~r~~elk~~~~~~se-~rv~~el~~K~~~~k~~~e~ 172 (268)
T PF11802_consen 94 LQKLISELEMVLSTVQSKNEKLKEDLEREQQWLDEQQQLLESLNKRHEELKNQVETFSE-SRVFQELKTKIEKIKEYKEK 172 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhcccccccc-CCCC
Q 010712 194 EKKFYNDHLES----------LQVMEKNYITMATEVEKLRAELMNAPNVDRRA-DGSY 240 (503)
Q Consensus 194 ekk~~~el~eq----------lqemEk~L~sm~rEIekLraELekle~el~~~-~~~y 240 (503)
+...+.+..+. ...-.++...-..++..|+.-|+.|.+.+..+ +-+|
T Consensus 173 Ll~~LgeFLeeHfPlp~~~~~~~Kkk~~~~e~~~~~~~l~eilE~LmN~l~~~p~DpY 230 (268)
T PF11802_consen 173 LLSFLGEFLEEHFPLPDEQGNAKKKKKGEDEPSAQLITLREILEILMNKLLDSPHDPY 230 (268)
T ss_pred HHHHHHHHHHhcCCCCcccchhhhhhccccccchhhhHHHHHHHHHHHHhcCCCCCCc
No 467
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=95.97 E-value=1.7 Score=42.04 Aligned_cols=156 Identities=15% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 010712 53 QKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEF 132 (503)
Q Consensus 53 qeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~EL 132 (503)
.++..+...+.....+++.-..-+-.++++| ...-+..|-.++.-...+.-.-+..+.+.+..+=+....
T Consensus 33 ~dVi~L~e~Ld~~L~~~~ar~~gIcpvr~~l--y~~~F~ELIRQVTi~C~ERGlLL~rvrde~~~~l~~y~~-------- 102 (189)
T PF10211_consen 33 QDVIQLQEWLDKMLQQRQARETGICPVREEL--YSQCFDELIRQVTIDCPERGLLLLRVRDEYRMTLDAYQT-------- 102 (189)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccccHHHHHH--HHHHHHHHHHHHHhCcHHHhHHHHHHHHHHHHHHHHHHH--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHH
Q 010712 133 QKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYND-HLESLQVMEKN 211 (503)
Q Consensus 133 eqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~e-l~eqlqemEk~ 211 (503)
..++.+.-......+.+..+..+..+|.. ++.+++.|..++..++..++..++...+ .....+.+.++
T Consensus 103 -l~~s~~~f~~rk~l~~e~~~~~l~~~i~~----------L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~e 171 (189)
T PF10211_consen 103 -LYESSIAFGMRKALQAEQGKQELEEEIEE----------LEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEE 171 (189)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 010712 212 YITMATEVEKLRAELMNA 229 (503)
Q Consensus 212 L~sm~rEIekLraELekl 229 (503)
+..+.+..+.|+.+|+.+
T Consensus 172 i~~lk~~~~ql~~~l~~~ 189 (189)
T PF10211_consen 172 IDFLKKQNQQLKAQLEQI 189 (189)
T ss_pred HHHHHHHHHHHHHHHhcC
No 468
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=95.97 E-value=1.9 Score=45.60 Aligned_cols=183 Identities=11% Similarity=-0.004 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAE 126 (503)
Q Consensus 47 ~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le 126 (503)
+++.+|++...+..++..|...+..|..++..-..+-+.+.+.|-.++..++.+.+...+-..++..-+....--...+.
T Consensus 59 ~lq~~e~ra~~L~~q~~~L~~~~~NLtkeLN~t~~~K~~imq~ll~~rrdl~rinasfrQcq~d~i~y~n~~Ry~aAIi~ 138 (442)
T PF06637_consen 59 RLQATEQRADRLYSQVVGLRASQANLTKELNLTTRAKDAIMQMLLNARRDLDRINASFRQCQADRIQYTNNQRYMAAIIL 138 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhchhHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 010712 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQ 206 (503)
Q Consensus 127 ~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlq 206 (503)
+-+.=.++++.-.+...+....|..++..|+.|+.+.+. ....+.+.+-..-...+.+++.+.+..+....+.+
T Consensus 139 sekqc~eqLke~Nksc~al~~~L~~k~Ktle~E~~kek~------vctkdKE~ll~~kr~~e~Q~~~C~k~re~q~qe~Q 212 (442)
T PF06637_consen 139 SEKQCQEQLKEINKSCNALLLMLNQKAKTLEVELAKEKA------VCTKDKEGLLLSKRQVEEQLEECGKAREQQQQERQ 212 (442)
T ss_pred hHhhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHhccccccc
Q 010712 207 VMEKNYITMATEVEKLR-AELMNAPNVDRR 235 (503)
Q Consensus 207 emEk~L~sm~rEIekLr-aELekle~el~~ 235 (503)
-.+..++..+.=.-.|. .+++.--..+|+
T Consensus 213 Lae~~lq~vq~~C~pLDkdk~~~~l~~lWR 242 (442)
T PF06637_consen 213 LAEEQLQKVQALCLPLDKDKFETDLRNLWR 242 (442)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHH
No 469
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=95.96 E-value=1.3 Score=43.14 Aligned_cols=138 Identities=20% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHH------HHHHHHHHHHHHHHHH
Q 010712 74 ATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK-TAEPVKL------EFQKSKTEAQNLVVAR 146 (503)
Q Consensus 74 ~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~-~le~Lk~------ELeqLraELqqL~~er 146 (503)
.+..+|-.+|..-.+.|..|...+..-....+.+-..+.++-..|++|+- ++...+. .|-..=.+|+++..+.
T Consensus 5 ~eY~~lld~l~~Nnr~L~~L~~dl~~~~~~~~~~e~~~~~KY~~lR~ElI~ELkqsKklydnYYkL~~KY~~LK~~~~~~ 84 (196)
T PF15272_consen 5 SEYLELLDQLDQNNRALSDLNQDLRERDERYELQETSYKEKYQQLRQELINELKQSKKLYDNYYKLYSKYQELKKSSKQS 84 (196)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q ss_pred HHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 147 EELIAKVHQLTQDL-QRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYIT 214 (503)
Q Consensus 147 qeLe~qiq~L~~EL-qrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~s 214 (503)
.++...|..|+.+| ......-.++..+..+|..++-..++++.+.+..+..+ +.+++++|..|..
T Consensus 85 ~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r~~el~~~r~~e~~~Y---esRI~dLE~~L~~ 150 (196)
T PF15272_consen 85 EDLQSRISNLEKQLVDQMIEKDREIRTLQDELLSLELRNKELQNERERERIAY---ESRIADLERQLNS 150 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHH
No 470
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=95.95 E-value=3.1 Score=45.00 Aligned_cols=182 Identities=13% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH---HHHHHHHHHHHHHHHHHHHHHHH
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS---ERELQMRNLTEKIAKMEAELKTA 125 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lka---e~E~el~eL~eki~kLEaEL~~l 125 (503)
..|--+|+....-..+++.++..-..--++|.+-|..+-.=-.++-++...++. ++-..-+.+.+-|..++..-.+.
T Consensus 298 eeLR~dle~~r~~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~~Ll~~Hr~i~egI~dVKkaAakA 377 (488)
T PF06548_consen 298 EELRVDLESSRSLAEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYADLQEKHNDLLARHRRIMEGIEDVKKAAAKA 377 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 010712 126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESL 205 (503)
Q Consensus 126 e~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eql 205 (503)
-.--.+..=+++-..++...+.+-+.++.-|+.+...|+.++..-.+...---+|-..|..++......++......++.
T Consensus 378 g~kG~~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ 457 (488)
T PF06548_consen 378 GVKGAESRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQEN 457 (488)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHhcc
Q 010712 206 QVMEKNYITMAT----EVEKLRAELMNAP 230 (503)
Q Consensus 206 qemEk~L~sm~r----EIekLraELekle 230 (503)
..+.++|+.|.+ ||..|+.-|.+.+
T Consensus 458 ek~~kqiekLK~kh~~Ei~t~kq~laes~ 486 (488)
T PF06548_consen 458 EKAKKQIEKLKRKHKMEISTMKQYLAESR 486 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 471
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=95.95 E-value=0.027 Score=50.40 Aligned_cols=94 Identities=12% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhH---------------------------
Q 010712 139 AQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTY--------------------------- 191 (503)
Q Consensus 139 LqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~el--------------------------- 191 (503)
++++....+.+..+++.|...+..+...+.++......|+.+..+ .....-+
T Consensus 1 ~qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~-~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~ 79 (126)
T TIGR00293 1 LQQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGA-EGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYY 79 (126)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEE
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712 192 --EYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 192 --e~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el 233 (503)
....+.+..+..++..+++.+..+.+++.++++++..+..++
T Consensus 80 vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l 123 (126)
T TIGR00293 80 VEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEA 123 (126)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 472
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.95 E-value=0.96 Score=45.19 Aligned_cols=170 Identities=19% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhhhhccchHHHHHHHH-HHHHHHHHHHH
Q 010712 51 MEQKIASQHVEMQKLATENQRLAATHGT---------LRQELAAAQHELQILHGQIGGMKSERELQMR-NLTEKIAKMEA 120 (503)
Q Consensus 51 LEqeIe~~~~EIq~Le~enqrLa~e~~~---------LrqeLa~lq~EL~~L~~qL~~lkae~E~el~-eL~eki~kLEa 120 (503)
|.++|..+-..|+.-......+-..+.. |..+|...-..|++++.+|....+..+..-+ .|.+....++.
T Consensus 6 LQ~Eid~~lKkv~EG~~~F~~i~~K~~~~~n~~QKEK~E~DLKkEIKKLQR~RdQIK~W~~~~diKdk~~L~e~Rk~IE~ 85 (233)
T PF04065_consen 6 LQQEIDRTLKKVQEGVEEFDEIYEKVESATNQNQKEKLEADLKKEIKKLQRLRDQIKTWLSSNDIKDKKKLLENRKLIEE 85 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH----
Q 010712 121 ELKTAEPVKLE----------FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHH---- 186 (503)
Q Consensus 121 EL~~le~Lk~E----------LeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~---- 186 (503)
.|+....++.+ |. ....+.-...++.+....++....+|.+ +++.+..|++.|.....+
T Consensus 86 ~MErFK~vEkesKtKafSkeGL~-~~~k~dp~e~ek~e~~~wl~~~Id~L~~------QiE~~E~E~E~L~~~~kKkk~~ 158 (233)
T PF04065_consen 86 QMERFKVVEKESKTKAFSKEGLM-AASKLDPKEKEKEEARDWLKDSIDELNR------QIEQLEAEIESLSSQKKKKKKD 158 (233)
T ss_pred HHHHHHHHHHHhcccccchhhhh-cccccCcchHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhccCccC
Q ss_pred --HHhhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Q 010712 187 --CRGTYEYEKKFYNDHLESLQVMEKNYITM------ATEVEKLRAELM 227 (503)
Q Consensus 187 --lR~ele~ekk~~~el~eqlqemEk~L~sm------~rEIekLraELe 227 (503)
....++.++..+..+.-++..||.-|..| -..|..++..|+
T Consensus 159 ~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~N~~l~~e~V~~ikedie 207 (233)
T PF04065_consen 159 STKQERIEELESRIERHKFHIEKLELLLRLLDNDELDPEQVEDIKEDIE 207 (233)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
No 473
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.94 E-value=3.1 Score=45.81 Aligned_cols=186 Identities=16% Similarity=0.170 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010712 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEP 127 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~ 127 (503)
...+.+.|..++..+..|...++++......|...+.....-+..+...-.... ++...+..|..-+..+..-+++..
T Consensus 276 f~e~~~~i~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~-~l~~~~~~~~~~~~~~~~~~e~~~- 353 (503)
T KOG2273|consen 276 FTEKKEKIDKLEQQLKKLSKQVQRLVKRRRELASNLAELGKALAQLSALEGETD-ELSEALSGLAKVIESLSKLLEKLT- 353 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhh-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH---------HHHHhhHHHHHHHH
Q 010712 128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEY---------HHCRGTYEYEKKFY 198 (503)
Q Consensus 128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qEL---------q~lR~ele~ekk~~ 198 (503)
.+.+...+...+..+....+.+...+.+....++.+......+...+..+..+.... ..++.+++.++..+
T Consensus 354 ~~~~~~~~~~~l~~~i~~~~~~k~~~~~r~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~k~~~~~~e~~~~~~~~ 433 (503)
T KOG2273|consen 354 AEKDSKKLAEQLREYIRYLESVKSLFEQRSKALQKLQEAQRELSSKKEQLSKLKKKNRSSFGFDKIDLAEKEIEKLEEKV 433 (503)
T ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 010712 199 NDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRR 235 (503)
Q Consensus 199 ~el~eqlqemEk~L~sm~rEIekLraELekle~el~~ 235 (503)
..+.+.+...+..+......+..--...++.+...+.
T Consensus 434 ~~~~~~~~~~~~~~~~i~~~~~~e~~~f~~~~~~d~~ 470 (503)
T KOG2273|consen 434 NELEELLALKELELDEISERIRAELERFEESRRQDFK 470 (503)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 474
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=95.93 E-value=1.8 Score=44.10 Aligned_cols=170 Identities=13% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 010712 53 QKIASQHVEMQKLATENQRLAATHGTLRQELAA----AQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPV 128 (503)
Q Consensus 53 qeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~----lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~L 128 (503)
.+|..+...-+.+......+..+....-.+|.. ....|.++...+..+..++-.....+...++....-|+.+...
T Consensus 57 r~L~~LIk~EK~vi~s~e~~are~~~~A~~L~~WG~~edddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~ 136 (271)
T PF13805_consen 57 RKLQRLIKAEKSVIRSLESAARERKAAAKQLSEWGEQEDDDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNR 136 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 010712 129 KLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVM 208 (503)
Q Consensus 129 k~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqem 208 (503)
+..|+..+..-++|..++..|+.+--. ...|..|++++.+ ...++...+.+|..+.++ .+|..+......+.++
T Consensus 137 E~sl~p~R~~r~~l~d~I~kLk~k~P~-s~kl~~LeqELvr---aEae~lvaEAqL~n~kR~--~lKEa~~~~f~Al~E~ 210 (271)
T PF13805_consen 137 EESLQPSRDRRRKLQDEIAKLKYKDPQ-SPKLVVLEQELVR---AEAENLVAEAQLSNIKRQ--KLKEAYSLKFDALIER 210 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-TT-TTTHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHhHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH---HHHHhhHHHHHHHHhhHH--HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 010712 209 EKNYITMATEVEKLRAELMN 228 (503)
Q Consensus 209 Ek~L~sm~rEIekLraELek 228 (503)
-+++.-+.+-=..|-.+|..
T Consensus 211 aEK~~Ila~~gk~Ll~lldd 230 (271)
T PF13805_consen 211 AEKQAILAEYGKRLLELLDD 230 (271)
T ss_dssp HHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHHHHHHHHHhccC
No 475
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=95.93 E-value=0.12 Score=44.97 Aligned_cols=104 Identities=13% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 010712 62 MQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS-ERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQ 140 (503)
Q Consensus 62 Iq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lka-e~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELq 140 (503)
++.+..+.+.|..++..|..++..+..++......+..+.. +-+..+=.+.-.+--....-.....|+..++.+..+++
T Consensus 1 ~q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~ 80 (105)
T cd00632 1 VQEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIK 80 (105)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 141 NLVVAREELIAKVHQLTQDLQRAHT 165 (503)
Q Consensus 141 qL~~erqeLe~qiq~L~~ELqrlk~ 165 (503)
++......+..++.+++.+|.++..
T Consensus 81 ~l~~~~~~l~~~~~elk~~l~~~~~ 105 (105)
T cd00632 81 RLERQEEDLQEKLKELQEKIQQAQK 105 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
No 476
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=95.93 E-value=0.61 Score=54.16 Aligned_cols=155 Identities=15% Similarity=0.195 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 48 PEVMEQKIASQHVEMQKLATEN-QRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAE 126 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le~en-qrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le 126 (503)
...++..+..+..++|-...+. ..|++....+-..+-.+-.++..++.+...++. ++..+++++++++.+-...-
T Consensus 29 ~~~~d~~ls~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~----~~~~v~~~~~~~e~~t~~s~ 104 (766)
T PF10191_consen 29 LEKADAHLSSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQE----QMASVQEEIKAVEQDTAQSM 104 (766)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhhccHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHH
Q 010712 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRG--TYEYEKKFYNDHLES 204 (503)
Q Consensus 127 ~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~--ele~ekk~~~el~eq 204 (503)
....+|+.+|..++.....+++....-. |..+|+.+-.. ..+..+...|.++++-|.-+.. +++.-++.++.++++
T Consensus 105 ~~L~~ld~vK~rm~~a~~~L~EA~~w~~-l~~~v~~~~~~-~d~~~~a~~l~~m~~sL~~l~~~pd~~~r~~~le~l~nr 182 (766)
T PF10191_consen 105 AQLAELDSVKSRMEAARETLQEADNWST-LSAEVDDLFES-GDIAKIADRLAEMQRSLAVLQDVPDYEERRQQLEALKNR 182 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHH
Q ss_pred HHHH
Q 010712 205 LQVM 208 (503)
Q Consensus 205 lqem 208 (503)
+..+
T Consensus 183 LEa~ 186 (766)
T PF10191_consen 183 LEAL 186 (766)
T ss_pred HHHH
No 477
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=95.91 E-value=0.97 Score=43.76 Aligned_cols=126 Identities=16% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 83 LAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR 162 (503)
Q Consensus 83 La~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqr 162 (503)
|...+.-++.|+.++...+...+.+...|..-...+..-.......+.++..|+.-|+..+..+..++.-......+|..
T Consensus 62 L~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~e 141 (188)
T PF05335_consen 62 LAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAE 141 (188)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 010712 163 AHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKN 211 (503)
Q Consensus 163 lk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~ 211 (503)
-.+ -|..-+..++.|.+.|...|.+|+..++....-..--.+...+
T Consensus 142 K~q---LLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~kA~~AA~eAkq~ 187 (188)
T PF05335_consen 142 KTQ---LLEAAKRRVEELQRQLQAARADYEKTKKAAYKAACAAQEAKQK 187 (188)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 478
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=95.89 E-value=2 Score=42.31 Aligned_cols=185 Identities=13% Similarity=0.045 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHH----
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKT---- 124 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~---- 124 (503)
...+.++..++.+..+|..+..+....+..|..--..+.+.|..+=..+..-..+.........+....++.-+.+
T Consensus 15 e~~e~rf~~le~~~~kL~Ke~K~Y~~av~~M~~~q~~~se~l~e~Y~~~~~~~~~~~~v~e~~d~~~~~~~~~~~~~vL~ 94 (211)
T cd07612 15 EQCAMNLNMQQSDGNRLYKDLKAYLNAVKVMHESSKRLSQTLQDIYEPDWDGHEDLGAIVEGEDLLWNDYEAKLHDQALR 94 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCcccHHHHHHhccHHHHHHHHHHHHHHHHH
Q ss_pred -HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHH-----HHHH
Q 010712 125 -AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYE-----KKFY 198 (503)
Q Consensus 125 -le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~e-----kk~~ 198 (503)
++.+...+..+++-+.+-...+.+....+..++....+-+.+..+|.....|++..++..+.+-.+|..+ ...+
T Consensus 95 pi~~~~s~f~~i~~~i~KR~~KllDYD~~R~~~~kl~~k~~kD~~KL~kAe~el~~Ak~~ye~lN~~L~~ELP~L~~~Ri 174 (211)
T cd07612 95 TMESYMAQFPDVKERVAKRGRKLVDYDSARHHLEALQNAKKKDDAKIAKAEEEFNRAQVVFEDINRELREELPILYDSRI 174 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712 199 NDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 199 ~el~eqlqemEk~L~sm~rEIekLraELekle~el 233 (503)
.-+.--.+.+-+--....+|+.++-.+|..+...|
T Consensus 175 ~f~~psFeal~~~q~~F~~E~~k~~~~l~~~~~~l 209 (211)
T cd07612 175 GCYVTVFQNISNLRDTFYKEMSKLNHDLYNVMKKL 209 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 479
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=95.87 E-value=1.3 Score=42.96 Aligned_cols=156 Identities=13% Similarity=0.101 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELA--AAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTA 125 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa--~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~l 125 (503)
+.....-|-.+...+..|.....+|...++....... ..+.........| .-+.-.+.++..+..++..|+..+-.+
T Consensus 22 ~~~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~L-krKK~~E~ql~q~~~ql~nLEq~~~~i 100 (191)
T PTZ00446 22 NDEIYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILL-KRKKLYEQEIENILNNRLTLEDNMINL 100 (191)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhHHHHHHH-------HHHHHHHHHHHhhHHHH
Q 010712 126 EPVKLEFQKSKTEAQNLVVAREELIA----KVHQLTQDLQRAHTDVQQIPALLSEL-------ESLRQEYHHCRGTYEYE 194 (503)
Q Consensus 126 e~Lk~ELeqLraELqqL~~erqeLe~----qiq~L~~ELqrlk~elqqi~~l~~EI-------e~L~qELq~lR~ele~e 194 (503)
+..+...+.+.+--+...+...-... +|+.|..+|+.......+|.+....- ++|..||+.|.. +.+
T Consensus 101 E~a~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~~~~DEdELe~ELe~Le~--e~l 178 (191)
T PTZ00446 101 ENMHLHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLLNNVDDDEIDKELDLLKE--QTM 178 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH--HHH
Q ss_pred HHHHHHHHHHHHHH
Q 010712 195 KKFYNDHLESLQVM 208 (503)
Q Consensus 195 kk~~~el~eqlqem 208 (503)
.+.+ +.+.+-+|
T Consensus 179 ~~~l--l~~~~~~~ 190 (191)
T PTZ00446 179 EEKL--LKELIGEM 190 (191)
T ss_pred HHHH--HHHHhhcc
No 480
>PRK12705 hypothetical protein; Provisional
Probab=95.86 E-value=1 Score=49.95 Aligned_cols=146 Identities=11% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 010712 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVK 129 (503)
Q Consensus 50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk 129 (503)
..++-++....+.+.+. .+.+.+.++++...+.+++ .++...+.+.+..-+.|..+...|+...+.++..+
T Consensus 34 ~a~~~~~~a~~~a~~~~------~~~~~~~~~~~~~~~~~~e---~e~~~~~~~~~~~e~rl~~~e~~l~~~~~~l~~~~ 104 (508)
T PRK12705 34 EAERILQEAQKEAEEKL------EAALLEAKELLLRERNQQR---QEARREREELQREEERLVQKEEQLDARAEKLDNLE 104 (508)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 010712 130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES 204 (503)
Q Consensus 130 ~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eq 204 (503)
.+|...+.+|......+.++..+.....+++..+..+..+-.-++.--++++.|+..+-.+++.+-+...+.+..
T Consensus 105 ~~l~~~~~~l~~~~~~~~~~~~~~~~~Le~ia~lt~~eak~~l~~~~~~~~~~e~~~~i~~~e~~~~~~a~~~A~ 179 (508)
T PRK12705 105 NQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEEADLEAERKAQ 179 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.66 Score=40.93 Aligned_cols=106 Identities=14% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-----HHHHHHHHHHHHhhHHHH
Q 010712 120 AELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE-----LESLRQEYHHCRGTYEYE 194 (503)
Q Consensus 120 aEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~E-----Ie~L~qELq~lR~ele~e 194 (503)
+..++++.+-..++.|+.++.+....|+.|+.++++-+.-+..+..--......+-- -.+|..--..++..|++.
T Consensus 2 ~~~~kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI 81 (120)
T KOG3478|consen 2 ALQKKMEEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFI 81 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 195 KKFYNDHLESLQVMEKNYITMATEVEKLRAE 225 (503)
Q Consensus 195 kk~~~el~eqlqemEk~L~sm~rEIekLraE 225 (503)
.+.+..++.++.++++++..+..+|.++...
T Consensus 82 ~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~ 112 (120)
T KOG3478|consen 82 SKEIKRLENQIRDSQEEFEKQREAVIKLQQA 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=95.83 E-value=1.1 Score=48.77 Aligned_cols=152 Identities=16% Similarity=0.197 Sum_probs=0.0
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHH
Q 010712 43 DMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAEL 122 (503)
Q Consensus 43 ~~~p~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL 122 (503)
+|+-+...+-..+..... +..+...+......+++....+.+++..+...+.........++..+.+.+.++..+.
T Consensus 32 ~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~eq~~~l~~~~~ql~~~~ 107 (448)
T COG1322 32 QMLGELAAVLEQLLLLLA----FRAEAEQLRTFARSLQALNLELIQELNELKARLQQQLLQSREQLQLLIESLAQLSSEF 107 (448)
T ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH-HhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 010712 123 KT-AEPVKLEFQKSKTEAQ--NLVVAREELIAKVHQLTQDLQR-AHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFY 198 (503)
Q Consensus 123 ~~-le~Lk~ELeqLraELq--qL~~erqeLe~qiq~L~~ELqr-lk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~ 198 (503)
.. +..+..+..+...++. .++....=+....+.+++.++. .....++...+..+|..+..+++.+-++...+++.+
T Consensus 108 ~~~~~~i~e~~~~~~~el~~~~~~~Ll~~~~~~~e~f~e~l~~~~~~s~~~~~~~~~~i~~~lg~~~~la~e~~~Lt~~L 187 (448)
T COG1322 108 QELANEIFEELNRRLAELNQQNLKQLLKPLREVLEKFREQLEQRIHESAEERSTLLEEIDRLLGEIQQLAQEAGNLTAAL 187 (448)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=95.82 E-value=0.0024 Score=69.71 Aligned_cols=120 Identities=16% Similarity=0.153 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHH
Q 010712 47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQE----LAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAEL 122 (503)
Q Consensus 47 ~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~Lrqe----La~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL 122 (503)
..+..|+||..+++++..+..++++.+.++..-+++ |...+.+|+.-++.|.+.+.++|.+|+.+..++..+|+||
T Consensus 370 ~~e~YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~qmksII~RL~~vEeEL 449 (495)
T PF12004_consen 370 EVEKYEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDSQMKSIISRLMAVEEEL 449 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhhhhhhhhhh
Q ss_pred H-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 123 K-TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTD 166 (503)
Q Consensus 123 ~-~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~e 166 (503)
+ +..++..-|+..+.=|+.....+..|.+.-..|..-|.+|+..
T Consensus 450 rre~~~m~~~~~~kqrii~aQ~~~i~~Ldaan~Rl~sal~~lk~r 494 (495)
T PF12004_consen 450 RREHAEMQAVLDHKQRIIDAQEKRIAALDAANSRLMSALTQLKER 494 (495)
T ss_dssp ---------------------------------------------
T ss_pred hhhHHHHhcccccchHHHHHhhhhccccccccccccccccccccC
No 484
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=95.81 E-value=0.26 Score=57.32 Aligned_cols=116 Identities=18% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010712 52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLE 131 (503)
Q Consensus 52 EqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~E 131 (503)
++-|+....-+..-..+..+|..++++.+.+++....+++.+..+++.++.+.+.+.++|.++..++.++.++ +++..
T Consensus 501 ~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~--~a~~~ 578 (782)
T PRK00409 501 ENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEK--EAQQA 578 (782)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Q ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhhhh
Q 010712 132 FQKSKTEAQNLVVAREE---------LIAKVHQLTQDLQRAHTDVQQ 169 (503)
Q Consensus 132 LeqLraELqqL~~erqe---------Le~qiq~L~~ELqrlk~elqq 169 (503)
+.+++.+++++..++.+ ...++++...++.+++..+++
T Consensus 579 l~~a~~~~~~~i~~lk~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 625 (782)
T PRK00409 579 IKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEK 625 (782)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhhhhhh
No 485
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=95.81 E-value=0.15 Score=43.59 Aligned_cols=83 Identities=16% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-------------------HHHHHHHHHHHHHHHhhHHH
Q 010712 133 QKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPAL-------------------LSELESLRQEYHHCRGTYEY 193 (503)
Q Consensus 133 eqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l-------------------~~EIe~L~qELq~lR~ele~ 193 (503)
+++..+++.+..++..+..++..|..++.++..-+..|..+ ..-++.|..+++.+..+++.
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~ 80 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010712 194 EKKFYNDHLESLQVMEKNYITM 215 (503)
Q Consensus 194 ekk~~~el~eqlqemEk~L~sm 215 (503)
+++....+.+++++++.+|..+
T Consensus 81 l~~~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 81 LEKQLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 486
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=95.79 E-value=1.5 Score=46.80 Aligned_cols=182 Identities=19% Similarity=0.190 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH---HHHHHHHHHHHHHHHHHHHHHH
Q 010712 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS---ERELQMRNLTEKIAKMEAELKT 124 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lka---e~E~el~eL~eki~kLEaEL~~ 124 (503)
|..|.++-...+.-|+.|..+-.-|.+-++.-+++-+.++.=..+|+....++.. +.|.+...|+..-..||+.|+-
T Consensus 127 ItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrkVt~SVedaEiKtnvLkqnS~~LEekLr~ 206 (558)
T PF15358_consen 127 ITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCRKVTRSVEDAEIKTNVLKQNSALLEEKLRY 206 (558)
T ss_pred hhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccchHHHHHHHHH
Q ss_pred Hh---------HHHHHHHHHHHH--------------------------------------------------------H
Q 010712 125 AE---------PVKLEFQKSKTE--------------------------------------------------------A 139 (503)
Q Consensus 125 le---------~Lk~ELeqLraE--------------------------------------------------------L 139 (503)
+. ..+.|+++++.. +
T Consensus 207 lq~qLqdE~prrqe~e~qELeqkleagls~~~l~p~~~~~g~~~p~~s~~~p~~~~~l~~~~~~~~~rage~~~~seq~l 286 (558)
T PF15358_consen 207 LQQQLQDETPRRQEAEWQELEQKLEAGLSRSGLPPTADSTGCPGPPGSPEEPPRPRNLAPAGWGGGPRAGEGPELSEQEL 286 (558)
T ss_pred HHHHhcccCcchhhhhHHHHHHHHhhhhhhcCCCccccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCccccHHhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 140 QNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE----LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITM 215 (503)
Q Consensus 140 qqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~E----Ie~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm 215 (503)
++.-.-+.+|..++..|...-.+.+-.++++-.+... ++.+-.+-++...+-......+.++..+..++-.-.+.-
T Consensus 287 qk~~s~LEelRrevssLtarw~qEega~qEaLrlLgglggRldgflgqWERaQ~eq~q~ar~lqeLR~~~delct~vers 366 (558)
T PF15358_consen 287 QKVSSGLEELRREVSSLTARWHQEEGAVQEALRLLGGLGGRLDGFLGQWERAQREQAQTARGLQELRGRADELCTMVERS 366 (558)
T ss_pred cccCccHHHHHHHHHHHhhHHHHHHhHHHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHhc
Q 010712 216 ATEVEKLRAELMNA 229 (503)
Q Consensus 216 ~rEIekLraELekl 229 (503)
.--+..|++||+-+
T Consensus 367 avs~asLrseLegl 380 (558)
T PF15358_consen 367 AVSVASLRSELEGL 380 (558)
T ss_pred HhHHHHHHHHhhcc
No 487
>PRK12705 hypothetical protein; Provisional
Probab=95.78 E-value=2.6 Score=46.81 Aligned_cols=168 Identities=13% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 010712 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVK 129 (503)
Q Consensus 50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk 129 (503)
.+=.....+..+.+.+..+.++-+..+. ++.+..++.++..++.++++...+...+++.++.++.+.++ .++.-.
T Consensus 23 ~~~~~~~~~~~~a~~~~~~a~~~a~~~~--~~~~~~~~~~~~~~~~~~e~e~~~~~~~~~~~e~rl~~~e~---~l~~~~ 97 (508)
T PRK12705 23 VLLKKRQRLAKEAERILQEAQKEAEEKL--EAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEE---QLDARA 97 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--HHHHHHHHH-HHHhhHHHHHHHHHHHHHHHH
Q 010712 130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE--LESLRQEYH-HCRGTYEYEKKFYNDHLESLQ 206 (503)
Q Consensus 130 ~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~E--Ie~L~qELq-~lR~ele~ekk~~~el~eqlq 206 (503)
.+|+..+.+|.+....+.....+++.+ +++...+++++..+..+ .+.|-.+++ +++.++...-+.+++..+. .
T Consensus 98 ~~l~~~~~~l~~~~~~l~~~~~~~~~~---~~~~~~~Le~ia~lt~~eak~~l~~~~~~~~~~e~~~~i~~~e~~~~~-~ 173 (508)
T PRK12705 98 EKLDNLENQLEEREKALSARELELEEL---EKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEEADL-E 173 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010712 207 VMEKNYITMATEVEKLRAEL 226 (503)
Q Consensus 207 emEk~L~sm~rEIekLraEL 226 (503)
.-.+...-+..-++++..+.
T Consensus 174 a~~~A~~ii~~aiqr~a~~~ 193 (508)
T PRK12705 174 AERKAQNILAQAMQRIASET 193 (508)
T ss_pred HHHHHHHHHHHHHHHhccch
No 488
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=95.78 E-value=1 Score=45.20 Aligned_cols=171 Identities=19% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHH-------------HHHHhHHHHHHH
Q 010712 70 QRLAATHGTLRQELA---AAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAE-------------LKTAEPVKLEFQ 133 (503)
Q Consensus 70 qrLa~e~~~LrqeLa---~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaE-------------L~~le~Lk~ELe 133 (503)
++|.+++..|....+ .+-++|...=.+..+++.+.-..|+.|..+...-..+ +..-..+..+.+
T Consensus 1 ~qL~dQ~~~L~~~te~~i~lLed~~~F~r~RaeIE~EYs~~L~kL~k~~~~K~~~~~~~~~~~~~~s~~~~W~~lL~qt~ 80 (241)
T cd07656 1 QQLSEQLKCLDLRTEAQVQLLADLQDYFRRRAEIELEYSRSLEKLADRFSSKHKNEKSKREDWSLLSPVNCWNTLLVQTK 80 (241)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCcCCHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 010712 134 KSKTEAQNLVVAREE-LIAKVHQLTQDLQRAHTDVQQI-PALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKN 211 (503)
Q Consensus 134 qLraELqqL~~erqe-Le~qiq~L~~ELqrlk~elqqi-~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~ 211 (503)
.+-.+...+...... +...+..|..++.++......+ ..+..+|...-.||++++..+..+.+........+++++..
T Consensus 81 ~~a~~h~~lse~l~~~i~~~l~~l~~d~~~~~Kk~~e~~~~lq~el~~~~~eL~k~kK~Y~~~~~ea~~A~~K~~~ae~~ 160 (241)
T cd07656 81 QESRDHSTLSDIYSNNLVQRLGQMSEDLQRISKKCREIGSQLHDELLRVLNELQTAMKTYHTYHAESKSAERKLKEAEKQ 160 (241)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH-----------------HHHHHHHHHHHHHhccccccccCCCC
Q 010712 212 YIT-----------------MATEVEKLRAELMNAPNVDRRADGSY 240 (503)
Q Consensus 212 L~s-----------------m~rEIekLraELekle~el~~~~~~y 240 (503)
+.. ++++++|.+............+-+-|
T Consensus 161 ~~k~~~~~~~~~~~~~~~~~~~~~~eK~k~k~~~~~~k~~~akNeY 206 (241)
T cd07656 161 EEKQEQSPEKKLERSRSSKKIEKEVEKRQAKYSEAKLKCTKARNEY 206 (241)
T ss_pred HhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=95.77 E-value=0.58 Score=40.03 Aligned_cols=107 Identities=16% Similarity=0.176 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 010712 126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH--TDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLE 203 (503)
Q Consensus 126 e~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk--~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~e 203 (503)
+.++.+|..+..++..+...+..|...+..+...+.... ..+..+.....-|..|...+..++.+++.+++.+....+
T Consensus 1 d~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~ 80 (123)
T PF02050_consen 1 DQAEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQARE 80 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010712 204 SLQVMEKNYITMATEVEKLRAELMNAPNV 232 (503)
Q Consensus 204 qlqemEk~L~sm~rEIekLraELekle~e 232 (503)
.+.+...+...++.=+++...+......+
T Consensus 81 ~l~~a~~~~k~~e~L~e~~~~~~~~~~~r 109 (123)
T PF02050_consen 81 ELQEARRERKKLEKLKERRREEYQQEEER 109 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.77 E-value=1.6 Score=42.22 Aligned_cols=141 Identities=12% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 010712 90 LQILHGQIGGMKSERELQMRNLTEKIAKMEAELKT------AEPVKLEFQKSKTEAQNLVVAREELIAK---VHQLTQDL 160 (503)
Q Consensus 90 L~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~------le~Lk~ELeqLraELqqL~~erqeLe~q---iq~L~~EL 160 (503)
|......+.+-...++.+|..|..++.+++.++.. ...|++..-.+-++-+.....+..|..+ ++...--+
T Consensus 17 L~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~ 96 (218)
T KOG1655|consen 17 LQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTA 96 (218)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHh
Q 010712 161 QRAHTDVQQIPALLSELESLRQEYHHCRGT-YEYEKKFYNDHLESLQVMEKNY-----------ITMATEVEKLRAELMN 228 (503)
Q Consensus 161 qrlk~elqqi~~l~~EIe~L~qELq~lR~e-le~ekk~~~el~eqlqemEk~L-----------~sm~rEIekLraELek 228 (503)
+.|+....-+.+++.-..+++.+..++..+ |+.++....++.++-.++.+.| ..+..||..|..|+.-
T Consensus 97 e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~peide~dL~aELdaL~~E~d~ 176 (218)
T KOG1655|consen 97 ESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTPDIDEADLDAELDALGQELDM 176 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHHHHhHhhc
Q ss_pred cc
Q 010712 229 AP 230 (503)
Q Consensus 229 le 230 (503)
+.
T Consensus 177 ~~ 178 (218)
T KOG1655|consen 177 LE 178 (218)
T ss_pred cc
No 491
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=95.76 E-value=0.28 Score=46.41 Aligned_cols=117 Identities=15% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010712 59 HVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTE 138 (503)
Q Consensus 59 ~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraE 138 (503)
..|++.|..++.+|.+.+.+|++.......||..|...| -+.+|+++|.+ |++|+...+..
T Consensus 78 ~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~L---------t~eemQe~i~~----------L~kev~~~~er 138 (201)
T KOG4603|consen 78 DEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSAL---------TTEEMQEEIQE----------LKKEVAGYRER 138 (201)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------ChHHHHHHHHH----------HHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHhhHHHH
Q 010712 139 AQNLVVAREELIA-KVHQLTQDLQRAHTDVQQIPALLSE-LESLRQEYHHCRGTYEYE 194 (503)
Q Consensus 139 LqqL~~erqeLe~-qiq~L~~ELqrlk~elqqi~~l~~E-Ie~L~qELq~lR~ele~e 194 (503)
|..+++-+..+.- .......+-++...++.++..+-.+ |+.+..-+...+.++-.+
T Consensus 139 l~~~k~g~~~vtpedk~~v~~~y~~~~~~wrk~krmf~ei~d~~~e~~pk~ksel~ee 196 (201)
T KOG4603|consen 139 LKNIKAGTNHVTPEDKEQVYREYQKYCKEWRKRKRMFREIIDKLLEGLPKKKSELYEE 196 (201)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
No 492
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=95.76 E-value=2.3 Score=44.59 Aligned_cols=180 Identities=13% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH----HHHHHHHHHHHHHHHHHHHHHH
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS----ERELQMRNLTEKIAKMEAELKT 124 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lka----e~E~el~eL~eki~kLEaEL~~ 124 (503)
..|-.++.....-+..-..-...|...+...+..|..+...+..|...+-.... ..+..+..|...+.+++.-..+
T Consensus 127 ~~l~~~~~k~~~~L~~A~~sD~~l~~~~~~~~~~l~lL~~~~~~l~~~iPs~~~~~~~~~~~~v~~Lr~ll~kl~~lk~e 206 (337)
T cd09234 127 TELKRELKKYKEAHEKASQSNTELHKAMNLHIANLKLLAGPLDELQKKLPSPSLLDRPEDEAIEKELKRILNKVNEMRKQ 206 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHhhCCCccccCCcccHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 010712 125 AEPVKLEFQKSKTEAQNLVVAREELIAKVHQL-TQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLE 203 (503)
Q Consensus 125 le~Lk~ELeqLraELqqL~~erqeLe~qiq~L-~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~e 203 (503)
...+..+|.+....-.=....+......++.| .++|.+.....+.|......-+.+..+|..+-.++...++.......
T Consensus 207 R~~l~~~Lk~k~~~DDI~~~ll~~~~~~~e~lf~~eL~k~~~~~~~l~~~~~~Q~~ll~~i~~an~~f~~~r~~~~~~~~ 286 (337)
T cd09234 207 RRSLEQQLRDAIHEDDITSKLVTTTGGDMEDLFKEELKKHDQLVNLIEQNLAAQENILKALTEANAKYAPVRKALSETKQ 286 (337)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 204 SLQVMEKNYITMATEVEKLRAELMN 228 (503)
Q Consensus 204 qlqemEk~L~sm~rEIekLraELek 228 (503)
+...+.+.|...-.....|.+.|++
T Consensus 287 ~Re~~l~~L~~ay~~y~el~~~l~e 311 (337)
T cd09234 287 KRESTISSLIASYEAYEDLLKKSQK 311 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
No 493
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=95.76 E-value=1.1 Score=44.86 Aligned_cols=174 Identities=14% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 010712 54 KIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQ 133 (503)
Q Consensus 54 eIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELe 133 (503)
+|...++.|.++...--+|.+++...-.+-+.+..+....-..| ...-..+-..++.....+..-+.
T Consensus 2 ~l~~~~e~l~k~q~~ei~lLE~i~~f~~eRakiEkEYA~~L~~L-------------~kq~~kk~~~~~~~~s~v~~sW~ 68 (234)
T cd07686 2 DLRNSHEALLKLQDWELRLLETVKKFMALRVKSDKEYASTLQNL-------------CNQVDKESTSQLDYVSNVSKSWL 68 (234)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHhcccCcccccchhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHH
Q 010712 134 KSKTEAQNLVVAREELIAKVHQ-LTQDLQRAHTDVQQIPALLSEL-ESLRQEYHH-CRGTYEYEKKFYNDHLESLQVMEK 210 (503)
Q Consensus 134 qLraELqqL~~erqeLe~qiq~-L~~ELqrlk~elqqi~~l~~EI-e~L~qELq~-lR~ele~ekk~~~el~eqlqemEk 210 (503)
.+-.+++.+...+..+...+.. +-.+|..+..+.+++.....++ ..|..|+.+ ...+++..++.+..+.+......+
T Consensus 69 ~vl~qte~iA~~~~~~aE~l~~~i~~~l~~l~~~~~~~~k~~~~~~~kl~~e~~~~~~~~l~K~K~~Y~~~~~~~e~ar~ 148 (234)
T cd07686 69 HMVQQTEQLSKIMKTHAEELNSGPLHRLTMMIKDKQQVKKSYIGVHQQIEAEMYKVTKTELEKLKCSYRQLTKEVNSAKE 148 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q ss_pred HHHHHH---HHHHHHHHHHHhccccccccCCCC
Q 010712 211 NYITMA---TEVEKLRAELMNAPNVDRRADGSY 240 (503)
Q Consensus 211 ~L~sm~---rEIekLraELekle~el~~~~~~y 240 (503)
..+... ++.++.++.+++...++-.+-+-|
T Consensus 149 K~~~a~~~gk~~~Ka~~k~~~~~~km~~~kN~Y 181 (234)
T cd07686 149 KYKDAVAKGKETEKARERYDKATMKLHMLHNQY 181 (234)
T ss_pred HHHHhhhcccchHHHHHHHHHHHHHHHhhhhHH
No 494
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.76 E-value=0.55 Score=51.92 Aligned_cols=181 Identities=13% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 010712 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKL 130 (503)
Q Consensus 51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ 130 (503)
+..+++.+..+++-|.....+++.+.+-|...|..+.....+.-..-+-.+...-.+.-+......++-.-+-++..-+-
T Consensus 330 ~~~Q~~~~~~~~~~~~Tr~Er~Er~~D~L~rri~~~~~~~~R~~~s~A~~K~~E~K~~~~~~~~~~r~i~~~~~~~~~~~ 409 (852)
T KOG4787|consen 330 AHLQLELAESQVQHLNTKIERLEKTNDHLNKKIVELEADCKRGGVTSAHSKAGEFKLTPEMEKDMSKMIVTISELERKNL 409 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHhhhhhcChHhHhHHHHHHHHHHHHHHhcc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-
Q 010712 131 EFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI-----PALLSELESLRQEYHHCRGTYEYEKKFYNDHLES- 204 (503)
Q Consensus 131 ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi-----~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eq- 204 (503)
++..++.+|+....-..++...-+..+.+|-+++.++.++ .+....+..|++.|+++-..+.-+.-.+..+..+
T Consensus 410 ~~s~~~r~L~~~~~~~~~~~~~~~s~~~Ei~~~QA~M~E~~Dt~~~~dV~~~~sL~~~LeqAsK~CRIL~~RL~K~~R~q 489 (852)
T KOG4787|consen 410 ELTTQVKQLETKVTPKPNFVVPSGTTTTELRKEQAQMNELKDTVFKSDVQKVISLATKLEQANKQCRILNERLNKLHRKQ 489 (852)
T ss_pred cHHHHHHHHhhccccchhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHHHHHH
Q ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712 205 -------------LQVMEKNYITMATEVEKLRAELMNAPN 231 (503)
Q Consensus 205 -------------lqemEk~L~sm~rEIekLraELekle~ 231 (503)
++-+|.++.--+.=-.+|.+||+.+++
T Consensus 490 ~R~~~~~~~d~~kIK~LE~e~R~S~~Ls~~L~~ElE~~~~ 529 (852)
T KOG4787|consen 490 VRDGEIQYSDELKIKILELEKRLSEKLAIDLVSELEGKIP 529 (852)
T ss_pred HhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 495
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=95.75 E-value=0.75 Score=49.31 Aligned_cols=162 Identities=15% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc----chHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHH
Q 010712 68 ENQRLAATHGTLRQELAAAQHELQILHGQIGG----MKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTE--AQN 141 (503)
Q Consensus 68 enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~----lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraE--Lqq 141 (503)
++..+......+...+..+.....-+..+-.. -..-.+.-+..|.++...++.|.+..+.....|++-..+ ...
T Consensus 101 ~~~~~~~~~~~~s~~~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~~~~~ 180 (447)
T KOG2751|consen 101 ENGSDGSNTKTLSATINVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVEDAEDEVDTYKACLQRLEQQNQDVSEED 180 (447)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 142 LVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEK 221 (503)
Q Consensus 142 L~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIek 221 (503)
+..+.+++..+-..|.++|.++..+... +..++.+++.+..++.++....-+.+....-++-+.++++.+++-+++=
T Consensus 181 ~~~e~~~l~~eE~~L~q~lk~le~~~~~---l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~ 257 (447)
T KOG2751|consen 181 LLKELKNLKEEEERLLQQLEELEKEEAE---LDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEY 257 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q ss_pred HHHHHHhcccc
Q 010712 222 LRAELMNAPNV 232 (503)
Q Consensus 222 LraELekle~e 232 (503)
-...|+++.+.
T Consensus 258 s~~qldkL~kt 268 (447)
T KOG2751|consen 258 SQAQLDKLRKT 268 (447)
T ss_pred HHHHHHHHHhh
No 496
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=95.75 E-value=2.3 Score=42.02 Aligned_cols=183 Identities=15% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPV 128 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~L 128 (503)
+.-.+.|..++..|+.+.....++...+..+-.....+-.-+..|...-....+..=.++.++.+++.+++..+..-+.+
T Consensus 26 e~ek~~l~~~~~~Lk~~~~~~e~l~~~rk~la~~~~~~s~sl~~L~~~e~t~L~~~l~~laev~eki~~l~~~~A~~e~l 105 (218)
T cd07662 26 EHERTFLLEYHNRVKDSSAKSDRMTRSHKSAADDYNRIGSSLYTLGTQDSTDICKFFLKVSELFDKTRKIEARVAADEDL 105 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----
Q 010712 129 KLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES---- 204 (503)
Q Consensus 129 k~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eq---- 204 (503)
+ |...-.+...+.....++-.++-..-.+-+.....+.+.....++|.+.+...++++++++.+-+.+......
T Consensus 106 ~--L~e~L~~Y~r~~~A~Kdll~rR~r~l~~~enA~k~L~KaR~~~kev~~aE~~~~~a~~~Fe~IS~~aK~El~rF~~~ 183 (218)
T cd07662 106 K--LSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAETTQQLCCQKFEKISESAKQELIDFKTR 183 (218)
T ss_pred h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -HHHHHHHHHHH-HHHHHHHHHHHHhccccc
Q 010712 205 -LQVMEKNYITM-ATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 205 -lqemEk~L~sm-~rEIekLraELekle~el 233 (503)
+.++.++|+.+ +-+|+-.+..++-+++-+
T Consensus 184 Rv~~Fkk~Lv~y~E~~lkhak~~~~~~~~~~ 214 (218)
T cd07662 184 RVAAFRKNLVELAELELKHAKGNLQLLQSCL 214 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=95.75 E-value=2.4 Score=42.10 Aligned_cols=171 Identities=13% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 51 MEQKIASQHVEMQKLATENQRLAATH-----GTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTA 125 (503)
Q Consensus 51 LEqeIe~~~~EIq~Le~enqrLa~e~-----~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~l 125 (503)
+..-...+..++..+......+...+ ..|+.-+...+.....+...+..+..++...+.+|....++.+...+..
T Consensus 63 ~~~aw~~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~ 142 (251)
T cd07653 63 SVKAFRSILNEVNDIAGQHELIAENLNSNVCKELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEA 142 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHH-----HHHHHHHHHHHHHhh-HHHHH
Q 010712 126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTD----VQQIPALLS-----ELESLRQEYHHCRGT-YEYEK 195 (503)
Q Consensus 126 e~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~e----lqqi~~l~~-----EIe~L~qELq~lR~e-le~ek 195 (503)
+.++..++....+......+++.+..+++....++.+.+.+ +........ .+..+-..++.+..+ +..++
T Consensus 143 ~~a~~k~~~~~~~~~~s~~~~eK~~~k~~k~~~~~~~a~~~Y~~~l~~~N~~~~~~y~~~~p~~~~~~q~le~~ri~~~k 222 (251)
T cd07653 143 EKAKQKYEKADADMNLTKADVEKAKANANLKTQAAEEAKNEYAAQLQKFNKEQRQHYSTDLPQIFDKLQELDEKRINRTV 222 (251)
T ss_pred HHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 196 KFYNDHLESLQVMEKNYITMATEVEK 221 (503)
Q Consensus 196 k~~~el~eqlqemEk~L~sm~rEIek 221 (503)
..+.........+-..+......|.+
T Consensus 223 ~~l~~~~~~~~~~~~~~~~~~~~i~~ 248 (251)
T cd07653 223 ELLLQAAEIERKVIPIIAKCLDGIKK 248 (251)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHhh
No 498
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=95.74 E-value=0.13 Score=40.79 Aligned_cols=60 Identities=18% Similarity=0.343 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 010712 113 EKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPA 172 (503)
Q Consensus 113 eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~ 172 (503)
+....|++|++..+.+..||..++.....+...+++.+.+...|..+|..++.+++++..
T Consensus 1 elQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 1 ELQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 499
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=95.72 E-value=0.2 Score=48.37 Aligned_cols=105 Identities=17% Similarity=0.271 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-H
Q 010712 99 GMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE-L 177 (503)
Q Consensus 99 ~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~E-I 177 (503)
+....++.++..|.+++..++. .+..++.+|+.++..-... .+|..+..++++|..++..++.+++......-+ |
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~---~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i 137 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEK---KIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYSENDPEKI 137 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 010712 178 ESLRQEYHHCRGTYEYEKKFYNDHLESLQV 207 (503)
Q Consensus 178 e~L~qELq~lR~ele~ekk~~~el~eqlqe 207 (503)
+.++.++..++..+..-...+..+..-+..
T Consensus 138 ~~~~~~~~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 138 EKLKEEIKIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
No 500
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=95.71 E-value=4.3 Score=44.95 Aligned_cols=181 Identities=7% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH----hHH
Q 010712 53 QKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTA----EPV 128 (503)
Q Consensus 53 qeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~l----e~L 128 (503)
++|..+...+..+...++.+..++...-.++.....++...-.++.....+....+.++...+..+...+.++ +.+
T Consensus 245 DEig~l~~s~n~m~~~l~~~i~~i~~~s~~v~~~s~el~~~~~~ls~~~~~qa~~i~~i~~s~eeis~~~~e~~~~~~~~ 324 (553)
T PRK15048 245 SEMGDLAQSVSHMQRSLTDTVTHVREGSDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQA 324 (553)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--HHHHHHHHHHHHhh---------HHHHHHH
Q 010712 129 KLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE--LESLRQEYHHCRGT---------YEYEKKF 197 (503)
Q Consensus 129 k~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~E--Ie~L~qELq~lR~e---------le~ekk~ 197 (503)
....+......++......++...+++|....+++..-+.-|..+-.+ |=.|..-|+.+|.- -++.+++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~I~~i~~~I~~Ia~QTNLLALNAaIEAARAGE~GrGFAVVA~EVr~L 404 (553)
T PRK15048 325 SQLAQSASDTAQHGGKVVDGVVKTMHEIADSSKKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNL 404 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCChhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712 198 YNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 198 ~~el~eqlqemEk~L~sm~rEIekLraELekle~el 233 (503)
.++..+..+++..-+..+...+++....+++....+
T Consensus 405 A~~t~~st~~I~~~i~~~~~~~~~~~~~~~~~~~~~ 440 (553)
T PRK15048 405 ASRSAQAAKEIKALIEDSVSRVDTGSVLVESAGETM 440 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!