Query 010712
Match_columns 503
No_of_seqs 296 out of 1172
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 12:40:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010712.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010712hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 99.1 9.8E-08 3.3E-12 91.1 27.1 43 51-93 4-46 (284)
2 2dfs_A Myosin-5A; myosin-V, in 98.9 2E-08 6.8E-13 117.0 17.2 154 68-229 922-1075(1080)
3 1i84_S Smooth muscle myosin he 98.9 2.7E-09 9.2E-14 125.7 10.1 47 52-98 856-902 (1184)
4 1i84_S Smooth muscle myosin he 98.9 3E-09 1E-13 125.2 9.8 49 49-97 860-908 (1184)
5 3na7_A HP0958; flagellar bioge 98.8 2.3E-06 7.7E-11 84.5 24.3 112 49-165 14-125 (256)
6 2v71_A Nuclear distribution pr 98.6 4.1E-06 1.4E-10 78.9 21.0 54 180-233 121-177 (189)
7 3na7_A HP0958; flagellar bioge 98.6 1.8E-06 6.3E-11 85.1 19.4 127 62-195 13-145 (256)
8 2dfs_A Myosin-5A; myosin-V, in 98.5 1.3E-06 4.6E-11 101.8 17.3 26 141-166 981-1006(1080)
9 3vkg_A Dynein heavy chain, cyt 98.4 2.2E-05 7.7E-10 99.4 25.6 47 51-97 1908-1957(3245)
10 3vkg_A Dynein heavy chain, cyt 98.4 1.1E-05 3.8E-10 102.1 22.5 13 216-228 2083-2095(3245)
11 2v71_A Nuclear distribution pr 98.3 8.9E-05 3E-09 69.9 21.3 24 207-230 158-181 (189)
12 4gkw_A Spindle assembly abnorm 98.3 0.00023 8E-09 62.6 21.8 63 167-229 97-159 (167)
13 3oja_B Anopheles plasmodium-re 98.2 8.9E-06 3E-10 88.2 14.5 42 177-218 539-580 (597)
14 3oja_B Anopheles plasmodium-re 98.2 1.7E-05 5.7E-10 86.1 15.6 61 174-234 522-582 (597)
15 3o0z_A RHO-associated protein 98.1 0.00054 1.9E-08 63.2 19.8 19 102-120 44-62 (168)
16 3o0z_A RHO-associated protein 98.0 0.0014 4.8E-08 60.5 22.3 53 175-227 97-153 (168)
17 2ocy_A RAB guanine nucleotide 97.9 0.001 3.4E-08 60.7 18.5 96 127-231 55-150 (154)
18 2efr_A General control protein 97.8 0.0089 3E-07 54.6 23.5 52 177-228 100-151 (155)
19 2efr_A General control protein 97.8 0.0081 2.8E-07 54.9 22.7 51 173-223 103-153 (155)
20 1deq_A Fibrinogen (alpha chain 97.8 0.032 1.1E-06 57.3 29.1 20 69-88 62-81 (390)
21 1deq_A Fibrinogen (alpha chain 97.8 0.022 7.4E-07 58.5 27.7 20 141-160 138-157 (390)
22 4gkw_A Spindle assembly abnorm 97.8 0.0048 1.6E-07 54.4 19.6 23 179-201 102-124 (167)
23 2ocy_A RAB guanine nucleotide 97.7 0.00099 3.4E-08 60.8 15.6 30 183-212 116-145 (154)
24 3ol1_A Vimentin; structural ge 97.7 0.00044 1.5E-08 60.6 12.2 90 49-166 16-105 (119)
25 2fxo_A Myosin heavy chain, car 97.6 0.0058 2E-07 54.1 18.4 104 128-231 18-125 (129)
26 3tnu_A Keratin, type I cytoske 97.6 0.0012 4.1E-08 58.6 13.3 114 104-227 15-129 (131)
27 2fxo_A Myosin heavy chain, car 97.5 0.0055 1.9E-07 54.3 17.3 45 51-95 11-55 (129)
28 3tnu_B Keratin, type II cytosk 97.5 0.0015 5E-08 57.9 13.5 113 104-226 13-126 (129)
29 3ghg_A Fibrinogen alpha chain; 97.5 0.00094 3.2E-08 70.9 14.0 17 109-125 60-76 (562)
30 3ghg_A Fibrinogen alpha chain; 97.5 0.0018 6E-08 68.8 15.2 42 172-213 114-155 (562)
31 3swk_A Vimentin; cytoskeleton, 97.4 0.00084 2.9E-08 55.6 9.5 82 77-165 3-84 (86)
32 3u1c_A Tropomyosin alpha-1 cha 97.4 0.0061 2.1E-07 51.8 14.9 40 182-221 58-97 (101)
33 3u1c_A Tropomyosin alpha-1 cha 97.4 0.0068 2.3E-07 51.5 15.2 57 173-229 42-98 (101)
34 2fic_A Bridging integrator 1; 97.4 0.12 3.9E-06 49.9 26.3 15 215-229 235-249 (251)
35 2v4h_A NF-kappa-B essential mo 97.4 0.0032 1.1E-07 54.0 12.7 63 107-169 46-108 (110)
36 1cun_A Protein (alpha spectrin 97.3 0.059 2E-06 49.9 22.5 94 140-233 109-208 (213)
37 3s84_A Apolipoprotein A-IV; fo 97.3 0.058 2E-06 53.6 23.0 45 45-89 10-59 (273)
38 3ol1_A Vimentin; structural ge 97.3 0.016 5.4E-07 50.7 16.6 23 99-121 13-35 (119)
39 3s84_A Apolipoprotein A-IV; fo 97.3 0.066 2.3E-06 53.1 23.1 12 191-202 200-211 (273)
40 3mq9_A Bone marrow stromal ant 97.2 0.0071 2.4E-07 63.7 17.0 30 201-230 441-470 (471)
41 3g67_A Methyl-accepting chemot 97.2 0.15 5.3E-06 48.7 28.5 23 138-160 120-142 (213)
42 1u5p_A Spectrin alpha chain, b 97.2 0.057 1.9E-06 50.3 21.3 94 140-233 112-211 (216)
43 3u59_A Tropomyosin beta chain; 97.2 0.014 4.8E-07 49.4 15.4 23 205-227 74-96 (101)
44 2no2_A HIP-I, huntingtin-inter 97.2 0.014 4.8E-07 50.2 14.8 84 128-211 13-97 (107)
45 3u59_A Tropomyosin beta chain; 97.1 0.015 5.1E-07 49.3 14.4 49 174-222 50-98 (101)
46 2v4h_A NF-kappa-B essential mo 97.1 0.0058 2E-07 52.4 11.6 79 132-217 26-104 (110)
47 3r6n_A Desmoplakin; spectrin r 97.0 0.29 9.9E-06 51.9 26.9 30 200-229 239-268 (450)
48 1u4q_A Spectrin alpha chain, b 97.0 0.12 4.1E-06 50.8 22.4 64 170-233 250-317 (322)
49 3edv_A Spectrin beta chain, br 97.0 0.073 2.5E-06 52.6 20.7 88 141-228 223-316 (323)
50 3edu_A Beta-I spectrin, spectr 97.0 0.079 2.7E-06 49.7 19.9 29 206-234 183-211 (218)
51 1u4q_A Spectrin alpha chain, b 96.9 0.1 3.5E-06 51.3 21.3 11 218-228 223-233 (322)
52 3hnw_A Uncharacterized protein 96.9 0.013 4.6E-07 52.5 13.1 22 206-227 113-134 (138)
53 1s35_A Beta-I spectrin, spectr 96.9 0.19 6.3E-06 46.6 21.7 94 139-232 109-208 (214)
54 2nrj_A HBL B protein; enteroto 96.8 0.026 8.8E-07 57.9 16.3 68 72-139 121-192 (346)
55 3g67_A Methyl-accepting chemot 96.8 0.35 1.2E-05 46.2 26.5 12 55-66 9-20 (213)
56 3q8t_A Beclin-1; autophagy, AT 96.8 0.036 1.2E-06 46.7 14.3 33 198-230 62-94 (96)
57 3fb2_A Spectrin alpha chain, b 96.8 0.1 3.4E-06 49.0 19.3 22 71-92 50-71 (218)
58 3pdy_A Plectin; cytoskeleton, 96.8 0.32 1.1E-05 45.6 24.9 162 68-233 39-207 (210)
59 3jsv_C NF-kappa-B essential mo 96.8 0.01 3.4E-07 49.6 10.5 67 104-170 21-87 (94)
60 2e7s_A RAB guanine nucleotide 96.8 0.0055 1.9E-07 54.6 9.5 89 127-224 43-131 (135)
61 2i1j_A Moesin; FERM, coiled-co 96.8 0.0035 1.2E-07 68.5 9.9 64 101-164 330-397 (575)
62 3jsv_C NF-kappa-B essential mo 96.8 0.0076 2.6E-07 50.3 9.2 84 134-224 6-89 (94)
63 3s4r_A Vimentin; alpha-helix, 96.8 0.02 6.8E-07 48.0 12.0 34 47-80 10-43 (93)
64 3r6n_A Desmoplakin; spectrin r 96.7 0.42 1.4E-05 50.6 25.1 30 205-234 237-266 (450)
65 2efk_A CDC42-interacting prote 96.7 0.5 1.7E-05 46.2 26.3 14 217-230 245-258 (301)
66 2eqb_B RAB guanine nucleotide 96.7 0.073 2.5E-06 44.8 15.1 32 131-162 27-58 (97)
67 3haj_A Human pacsin2 F-BAR; pa 96.7 0.029 9.8E-07 59.9 16.0 25 60-84 39-63 (486)
68 3mq9_A Bone marrow stromal ant 96.7 0.016 5.4E-07 61.1 13.7 24 210-233 443-466 (471)
69 2eqb_B RAB guanine nucleotide 96.7 0.036 1.2E-06 46.6 12.9 32 131-162 6-37 (97)
70 2no2_A HIP-I, huntingtin-inter 96.7 0.072 2.5E-06 45.7 15.2 93 128-220 6-99 (107)
71 2nrj_A HBL B protein; enteroto 96.7 0.023 8E-07 58.2 14.4 38 193-230 254-291 (346)
72 2e7s_A RAB guanine nucleotide 96.7 0.0021 7.1E-08 57.3 5.6 15 51-65 6-20 (135)
73 2zqm_A Prefoldin beta subunit 96.7 0.009 3.1E-07 51.2 9.5 32 198-229 79-110 (117)
74 3i00_A HIP-I, huntingtin-inter 96.6 0.0094 3.2E-07 52.3 9.4 21 102-122 36-56 (120)
75 1x79_B RAB GTPase binding effe 96.6 0.023 7.8E-07 49.1 11.4 53 69-121 8-60 (112)
76 3haj_A Human pacsin2 F-BAR; pa 96.6 0.27 9.2E-06 52.3 22.4 12 219-230 267-278 (486)
77 3mq7_A Bone marrow stromal ant 96.5 0.034 1.2E-06 48.0 12.1 32 130-161 32-63 (121)
78 1x79_B RAB GTPase binding effe 96.5 0.049 1.7E-06 47.1 12.9 92 128-228 11-102 (112)
79 3mq7_A Bone marrow stromal ant 96.5 0.048 1.6E-06 47.1 12.7 30 132-161 73-102 (121)
80 2b5u_A Colicin E3; high resolu 96.5 0.12 4.2E-06 54.6 18.4 11 46-56 291-301 (551)
81 2efl_A Formin-binding protein 96.5 0.56 1.9E-05 45.8 22.7 15 216-230 251-265 (305)
82 3oja_A Leucine-rich immune mol 96.5 0.17 5.9E-06 53.3 20.1 24 184-207 444-467 (487)
83 3kbt_A Beta-I spectrin, spectr 96.5 0.55 1.9E-05 46.2 22.7 21 213-233 220-240 (326)
84 1fxk_A Prefoldin; archaeal pro 96.5 0.015 5.1E-07 49.1 9.5 25 203-227 79-103 (107)
85 2x3v_A Syndapin I, protein kin 96.5 0.11 3.9E-06 52.1 17.8 25 60-84 37-61 (337)
86 2q12_A DIP13 alpha, DCC-intera 96.4 0.73 2.5E-05 44.7 24.5 45 48-92 23-67 (265)
87 3plt_A Sphingolipid long chain 96.4 0.74 2.5E-05 44.5 23.7 24 169-192 132-155 (234)
88 1quu_A Human skeletal muscle a 96.4 0.17 5.8E-06 48.5 17.9 16 170-185 164-179 (250)
89 3edv_A Spectrin beta chain, br 96.4 0.35 1.2E-05 47.6 20.7 20 214-233 223-242 (323)
90 3i00_A HIP-I, huntingtin-inter 96.4 0.014 4.9E-07 51.1 9.1 13 149-161 45-57 (120)
91 3kbt_A Beta-I spectrin, spectr 96.4 0.34 1.2E-05 47.7 20.5 27 207-233 293-319 (326)
92 3abh_A Pacsin2, protein kinase 96.3 0.079 2.7E-06 52.7 15.6 37 48-84 31-70 (312)
93 2xzr_A Immunoglobulin-binding 96.3 0.24 8.1E-06 41.4 15.3 42 50-91 3-44 (114)
94 1l8d_A DNA double-strand break 96.3 0.068 2.3E-06 45.5 12.7 40 126-165 6-45 (112)
95 2ch7_A Methyl-accepting chemot 96.3 0.97 3.3E-05 44.2 26.2 11 215-225 238-248 (309)
96 3plt_A Sphingolipid long chain 96.3 0.62 2.1E-05 45.1 20.5 50 149-202 109-158 (234)
97 3q8t_A Beclin-1; autophagy, AT 96.2 0.13 4.4E-06 43.2 13.8 34 56-89 7-40 (96)
98 2i1j_A Moesin; FERM, coiled-co 96.2 0.0016 5.4E-08 71.3 2.4 39 197-235 420-458 (575)
99 1cii_A Colicin IA; bacteriocin 96.2 1.6 5.3E-05 46.0 24.5 37 126-162 352-388 (602)
100 2v66_B Nuclear distribution pr 96.2 0.17 5.8E-06 43.7 14.5 22 63-84 6-27 (111)
101 1sjj_A Actinin; 3-helix bundle 96.2 0.52 1.8E-05 53.1 22.9 13 217-229 645-657 (863)
102 2oto_A M protein; helical coil 96.1 0.42 1.4E-05 43.2 17.8 9 65-73 34-42 (155)
103 1uru_A Amphiphysin; endocytosi 96.1 0.98 3.4E-05 42.8 24.0 30 52-81 36-65 (244)
104 1m1j_A Fibrinogen alpha subuni 96.1 0.14 4.7E-06 53.7 15.9 23 169-191 133-155 (491)
105 4fla_A Regulation of nuclear P 96.1 0.087 3E-06 47.9 12.9 22 71-92 36-57 (152)
106 1m1j_C Fibrinogen gamma chain; 96.1 0.037 1.3E-06 58.0 11.8 49 176-231 85-133 (409)
107 2efk_A CDC42-interacting prote 96.0 1.2 4.2E-05 43.4 26.4 18 60-77 24-41 (301)
108 2iak_A Bullous pemphigoid anti 96.0 0.31 1.1E-05 46.0 17.3 162 68-233 54-222 (224)
109 2b9c_A Striated-muscle alpha t 96.0 0.14 4.8E-06 46.3 13.8 57 177-233 82-145 (147)
110 1wt6_A Myotonin-protein kinase 96.0 0.06 2.1E-06 43.6 9.9 56 113-168 14-69 (81)
111 2v66_B Nuclear distribution pr 95.9 0.5 1.7E-05 40.7 16.3 14 107-120 4-17 (111)
112 2efl_A Formin-binding protein 95.9 1.4 4.7E-05 43.0 26.0 18 57-74 80-97 (305)
113 1d7m_A Cortexillin I; coiled-c 95.9 0.58 2E-05 38.5 16.0 50 177-226 48-97 (101)
114 1m1j_A Fibrinogen alpha subuni 95.9 0.18 6.1E-06 52.9 15.8 58 141-198 97-155 (491)
115 2b9c_A Striated-muscle alpha t 95.9 0.42 1.4E-05 43.1 16.4 38 127-164 56-93 (147)
116 1fxk_A Prefoldin; archaeal pro 95.9 0.1 3.5E-06 43.9 11.7 15 189-203 79-93 (107)
117 2v0o_A FCHO2, FCH domain only 95.9 1.4 4.7E-05 42.4 26.3 13 218-230 236-248 (276)
118 1y1u_A Signal transducer and a 95.8 0.59 2E-05 51.0 20.4 49 46-98 12-60 (585)
119 3zx6_A HAMP, methyl-accepting 95.8 1.8 6.2E-05 43.7 27.9 16 138-153 189-204 (341)
120 3abh_A Pacsin2, protein kinase 95.8 1.1 3.8E-05 44.2 21.2 7 204-210 239-245 (312)
121 2jee_A YIIU; FTSZ, septum, coi 95.8 0.066 2.2E-06 43.6 9.6 40 49-88 9-48 (81)
122 1m1j_C Fibrinogen gamma chain; 95.8 0.069 2.3E-06 56.0 12.4 29 120-148 38-66 (409)
123 3aco_A Pacsin2, protein kinase 95.8 0.26 9E-06 49.8 16.6 37 48-84 31-70 (350)
124 4ad8_A DNA repair protein RECN 95.8 0.38 1.3E-05 51.3 18.5 8 89-96 208-215 (517)
125 2v0o_A FCHO2, FCH domain only 95.8 1.5 5.1E-05 42.2 23.8 19 60-78 35-53 (276)
126 3a7p_A Autophagy protein 16; c 95.8 0.15 5.2E-06 46.1 12.8 22 174-195 102-123 (152)
127 4h8s_A DCC-interacting protein 95.7 2.3 7.7E-05 43.8 27.5 34 48-81 46-79 (407)
128 2b5u_A Colicin E3; high resolu 95.7 2.1 7.1E-05 45.4 22.8 15 77-91 317-331 (551)
129 3hnw_A Uncharacterized protein 95.6 0.28 9.6E-06 43.8 14.0 37 183-219 97-133 (138)
130 1fxk_C Protein (prefoldin); ar 95.6 0.067 2.3E-06 47.0 9.9 15 178-192 91-105 (133)
131 1cun_A Protein (alpha spectrin 95.6 1.4 4.7E-05 40.4 19.8 23 204-226 186-208 (213)
132 1cii_A Colicin IA; bacteriocin 95.5 2.9 0.0001 43.9 25.9 24 139-162 358-381 (602)
133 3tul_A Cell invasion protein S 95.5 0.37 1.3E-05 43.2 14.1 37 76-112 22-58 (158)
134 2fic_A Bridging integrator 1; 95.5 1.7 5.9E-05 41.6 20.5 28 52-79 51-78 (251)
135 3cvf_A Homer-3, homer protein 95.5 0.053 1.8E-06 44.0 8.0 61 51-111 4-64 (79)
136 3fb2_A Spectrin alpha chain, b 95.5 0.95 3.2E-05 42.2 18.2 16 173-188 157-172 (218)
137 3a7p_A Autophagy protein 16; c 95.5 0.082 2.8E-06 47.8 10.1 28 177-204 98-125 (152)
138 1f5n_A Interferon-induced guan 95.5 0.81 2.8E-05 50.1 20.0 17 216-232 566-582 (592)
139 2xhe_B Syntaxin1; exocytosis, 95.5 0.041 1.4E-06 54.4 9.0 29 45-73 40-68 (279)
140 1s35_A Beta-I spectrin, spectr 95.5 0.75 2.6E-05 42.4 17.3 23 71-93 37-59 (214)
141 1f5n_A Interferon-induced guan 95.5 1.5 5.2E-05 47.9 22.1 20 208-227 565-584 (592)
142 2xnx_M M protein, M1-BC1; cell 95.5 0.055 1.9E-06 48.5 8.7 41 128-168 71-111 (146)
143 4a3a_A Amphiphysin; structural 95.5 2 6.9E-05 41.5 24.2 25 52-76 37-61 (243)
144 3aco_A Pacsin2, protein kinase 95.4 2.2 7.4E-05 43.0 21.7 10 222-231 277-286 (350)
145 2l7b_A Apolipoprotein E, APO-E 95.3 0.27 9.4E-06 49.5 14.5 29 70-98 62-91 (307)
146 4avm_A Bridging integrator 2; 95.3 2.2 7.5E-05 41.0 23.4 30 49-78 36-65 (237)
147 1go4_E MAD1 (mitotic arrest de 95.3 0.11 3.8E-06 43.9 9.6 33 130-162 12-44 (100)
148 2d1l_A Metastasis suppressor p 95.3 2.4 8.1E-05 41.5 20.6 46 186-231 190-235 (253)
149 1gk4_A Vimentin; intermediate 95.3 0.2 6.8E-06 40.9 11.0 14 107-120 27-40 (84)
150 2x3v_A Syndapin I, protein kin 95.2 2.9 0.0001 41.6 26.3 15 68-82 38-52 (337)
151 3cve_A Homer protein homolog 1 95.1 0.14 4.6E-06 40.9 8.9 55 57-111 4-58 (72)
152 2pms_C Pneumococcal surface pr 95.0 0.068 2.3E-06 46.9 7.8 58 171-228 64-121 (125)
153 3c98_B Syntaxin-1A; protein co 95.0 0.056 1.9E-06 51.9 8.2 22 103-124 44-65 (279)
154 3l4q_C Phosphatidylinositol 3- 95.0 0.51 1.7E-05 43.6 14.0 44 54-97 11-54 (170)
155 3l4q_C Phosphatidylinositol 3- 95.0 1.7 5.9E-05 40.1 17.5 109 125-233 33-154 (170)
156 1bf5_A Signal transducer and a 94.9 0.49 1.7E-05 51.4 15.7 25 50-74 6-30 (575)
157 3pe0_A Plectin; cytoskeleton, 94.9 1.2 4.1E-05 44.1 17.6 32 199-230 153-184 (283)
158 3hhm_B NISH2 P85alpha; PI3KCA, 94.9 0.7 2.4E-05 47.7 16.4 44 52-95 125-168 (373)
159 3ajw_A Flagellar FLIJ protein; 94.9 1.4 4.7E-05 38.7 16.4 43 171-213 77-119 (150)
160 3ghg_C Fibrinogen gamma chain; 94.9 0.27 9.3E-06 51.4 13.2 36 198-233 100-135 (411)
161 1dn1_B Syntaxin 1A, syntaxin b 94.9 0.31 1E-05 48.0 13.1 20 53-72 35-54 (267)
162 3cl3_D NF-kappa-B essential mo 94.8 0.068 2.3E-06 46.9 7.2 90 130-219 9-99 (130)
163 3bas_A Myosin heavy chain, str 94.8 0.48 1.6E-05 39.1 12.2 37 128-164 19-55 (89)
164 4hpq_C ATG17, KLTH0D15642P; au 94.8 2.7 9.1E-05 44.0 20.6 58 65-123 195-252 (413)
165 1bg1_A Protein (transcription 94.8 0.16 5.4E-06 55.4 11.7 26 49-74 16-41 (596)
166 4dyl_A Tyrosine-protein kinase 94.8 4.4 0.00015 41.9 24.0 63 173-235 314-391 (406)
167 2p22_C Protein SRN2; endosome, 94.8 0.43 1.5E-05 45.0 13.2 6 62-67 43-48 (192)
168 2avr_X Adhesion A; antiparalle 94.7 0.94 3.2E-05 39.4 14.1 18 49-66 5-22 (119)
169 2odv_A Plectin 1, HD1; plakin 94.7 3.2 0.00011 40.1 21.8 57 169-228 166-222 (235)
170 1hci_A Alpha-actinin 2; triple 94.7 4.6 0.00016 41.8 26.1 19 75-93 173-191 (476)
171 3s4r_A Vimentin; alpha-helix, 94.7 0.22 7.4E-06 41.6 9.9 34 130-163 56-89 (93)
172 3ibp_A Chromosome partition pr 94.7 3.2 0.00011 41.4 19.7 15 175-189 224-238 (302)
173 1gk4_A Vimentin; intermediate 94.7 0.68 2.3E-05 37.7 12.5 50 172-228 30-79 (84)
174 2p22_C Protein SRN2; endosome, 94.6 1.6 5.6E-05 41.0 16.8 8 180-187 140-147 (192)
175 3ghg_C Fibrinogen gamma chain; 94.5 0.5 1.7E-05 49.4 14.2 50 178-227 87-136 (411)
176 1qu7_A Methyl-accepting chemot 94.5 3.5 0.00012 39.4 24.0 7 139-145 110-116 (227)
177 1ic2_A Tropomyosin alpha chain 94.5 0.23 7.8E-06 40.2 9.2 10 219-228 64-73 (81)
178 1quu_A Human skeletal muscle a 94.4 3.5 0.00012 39.1 20.1 15 106-120 94-108 (250)
179 1uru_A Amphiphysin; endocytosi 94.4 3.5 0.00012 38.9 19.1 33 48-80 39-71 (244)
180 3iox_A AGI/II, PA; alpha helix 94.4 0.57 1.9E-05 49.8 14.3 21 54-74 10-30 (497)
181 3hhm_B NISH2 P85alpha; PI3KCA, 94.3 0.85 2.9E-05 47.1 15.4 32 198-229 228-259 (373)
182 4hpq_C ATG17, KLTH0D15642P; au 94.3 6 0.00021 41.4 26.9 10 74-83 168-177 (413)
183 2a01_A Apolipoprotein A-I; fou 94.3 0.38 1.3E-05 46.7 12.1 6 54-59 14-19 (243)
184 1bf5_A Signal transducer and a 94.3 2.7 9.1E-05 45.7 19.7 23 171-193 122-144 (575)
185 2w83_C C-JUN-amino-terminal ki 94.3 0.3 1E-05 39.1 9.1 14 198-211 60-73 (77)
186 3iv1_A Tumor susceptibility ge 94.2 0.32 1.1E-05 39.3 9.3 59 175-233 18-76 (78)
187 1fxk_C Protein (prefoldin); ar 94.2 1.2 4E-05 38.9 14.1 39 191-229 90-128 (133)
188 2xs1_A Programmed cell death 6 94.2 8.1 0.00028 42.9 24.1 15 107-121 557-571 (704)
189 1go4_E MAD1 (mitotic arrest de 94.2 0.2 6.7E-06 42.4 8.3 23 208-230 73-95 (100)
190 3bas_A Myosin heavy chain, str 94.1 0.79 2.7E-05 37.8 11.8 45 49-93 10-54 (89)
191 2avr_X Adhesion A; antiparalle 94.0 1.1 3.6E-05 39.0 12.9 13 173-185 49-61 (119)
192 4abx_A DNA repair protein RECN 94.0 1.4 4.7E-05 40.4 14.7 22 141-162 91-112 (175)
193 3ajw_A Flagellar FLIJ protein; 94.0 2.9 9.9E-05 36.6 18.7 49 50-98 9-57 (150)
194 3m91_A Proteasome-associated A 93.9 0.17 5.6E-06 37.8 6.6 43 52-94 8-50 (51)
195 3ghg_B Fibrinogen beta chain; 93.9 0.43 1.5E-05 50.4 12.3 29 202-230 162-190 (461)
196 3nmd_A CGMP dependent protein 93.9 0.21 7.3E-06 39.7 7.6 34 200-233 37-70 (72)
197 1x8y_A Lamin A/C; structural p 93.9 0.38 1.3E-05 39.5 9.5 49 173-228 33-81 (86)
198 3lbx_B Beta-I spectrin, spectr 93.9 1.4 4.7E-05 40.2 14.5 20 74-93 44-63 (185)
199 3edu_A Beta-I spectrin, spectr 93.9 2.5 8.7E-05 39.2 16.6 20 170-189 149-168 (218)
200 3iyk_A VP5; icosahedral virus; 93.8 3.5 0.00012 43.7 18.7 13 49-61 93-105 (526)
201 1wle_A Seryl-tRNA synthetase; 93.7 0.63 2.1E-05 50.0 13.5 7 220-226 140-146 (501)
202 3ghg_B Fibrinogen beta chain; 93.7 1 3.4E-05 47.6 14.6 18 207-224 174-191 (461)
203 2qih_A Protein USPA1; trimeric 93.7 3.6 0.00012 36.5 18.9 32 133-164 57-88 (157)
204 2pms_C Pneumococcal surface pr 93.7 0.6 2.1E-05 40.9 10.7 13 174-186 109-121 (125)
205 3pdy_A Plectin; cytoskeleton, 93.6 4.3 0.00015 37.8 17.8 22 62-83 40-61 (210)
206 3i2w_A Syndapin, LD46328P; EFC 93.6 1.3 4.6E-05 43.2 14.7 10 220-229 253-262 (290)
207 2lem_A Apolipoprotein A-I; lip 93.5 4 0.00014 38.7 17.4 13 127-139 84-96 (216)
208 2q13_A DCC-interacting protein 93.4 7.6 0.00026 39.5 26.1 45 48-92 23-67 (385)
209 2l7b_A Apolipoprotein E, APO-E 93.4 4 0.00014 41.0 18.0 17 216-232 263-279 (307)
210 3iox_A AGI/II, PA; alpha helix 93.3 1.3 4.5E-05 47.0 14.6 44 81-124 9-52 (497)
211 3qne_A Seryl-tRNA synthetase, 93.2 0.47 1.6E-05 50.7 11.4 7 220-226 95-101 (485)
212 1xaw_A Occludin; coiled-coil, 93.2 1.6 5.4E-05 39.0 13.0 34 130-163 52-85 (140)
213 3tul_A Cell invasion protein S 93.1 3.2 0.00011 37.2 14.6 52 138-189 63-121 (158)
214 1yvl_A Signal transducer and a 93.0 2.3 7.7E-05 47.2 16.7 23 171-193 257-279 (683)
215 4emc_A Monopolin complex subun 93.0 0.26 8.7E-06 46.1 7.8 49 49-97 9-57 (190)
216 3qwe_A GMIP, GEM-interacting p 93.0 7.8 0.00027 38.4 20.6 17 81-97 101-117 (279)
217 3uul_A Utrophin; spectrin repe 93.0 1 3.4E-05 37.5 11.1 8 109-116 12-19 (118)
218 3dyt_A Sorting nexin-9; 3-heli 93.0 7.7 0.00026 39.5 19.9 27 48-74 163-189 (366)
219 3fx0_A NF-kappa-B essential mo 93.0 0.041 1.4E-06 45.9 2.1 61 102-162 34-94 (96)
220 3i2w_A Syndapin, LD46328P; EFC 93.0 7.1 0.00024 37.9 20.4 25 60-84 25-49 (290)
221 2xs1_A Programmed cell death 6 92.9 14 0.00047 41.1 28.3 23 6-28 328-350 (704)
222 1bg1_A Protein (transcription 92.9 3.1 0.00011 45.4 17.2 32 51-82 11-42 (596)
223 3fhn_A Protein transport prote 92.8 2.6 9E-05 46.9 16.8 23 58-80 15-37 (706)
224 3uun_A Dystrophin; triple heli 92.7 1.8 6.1E-05 35.8 12.2 16 128-143 48-63 (119)
225 4dk0_A Putative MACA; alpha-ha 92.7 0.27 9.3E-06 49.5 8.3 21 208-228 134-154 (369)
226 3mov_A Lamin-B1; LMNB1, B-type 92.6 0.42 1.4E-05 40.1 7.9 49 174-229 43-91 (95)
227 1fio_A SSO1 protein; four heli 92.6 6.1 0.00021 36.2 18.3 9 212-220 171-179 (196)
228 1u5p_A Spectrin alpha chain, b 92.6 6.2 0.00021 36.2 21.2 6 79-84 48-53 (216)
229 2zdi_C Prefoldin subunit alpha 92.5 0.41 1.4E-05 43.0 8.4 29 44-72 7-35 (151)
230 2p22_A Suppressor protein STP2 92.5 6.6 0.00023 36.3 17.9 56 175-230 115-170 (174)
231 1wt6_A Myotonin-protein kinase 92.4 1.3 4.5E-05 35.8 10.2 37 128-164 36-72 (81)
232 3iyk_A VP5; icosahedral virus; 92.4 8 0.00027 41.1 18.9 13 51-63 91-103 (526)
233 2w83_C C-JUN-amino-terminal ki 92.4 0.67 2.3E-05 37.1 8.3 34 172-205 41-74 (77)
234 2bsg_A Fibritin; viral protein 92.3 0.75 2.6E-05 48.7 11.1 8 24-31 8-15 (487)
235 4dnd_A Syntaxin-10, SYN10; str 92.3 0.69 2.4E-05 40.9 9.3 13 105-117 80-92 (130)
236 3uul_A Utrophin; spectrin repe 92.2 2.1 7.1E-05 35.5 12.1 15 128-142 48-62 (118)
237 3r2p_A Apolipoprotein A-I; amp 92.2 0.79 2.7E-05 42.5 10.2 17 47-63 8-24 (185)
238 3qh9_A Liprin-beta-2; coiled-c 92.1 1.2 4E-05 36.1 9.5 24 203-226 54-77 (81)
239 3iv1_A Tumor susceptibility ge 92.0 2.2 7.5E-05 34.4 11.0 29 128-156 16-44 (78)
240 3trt_A Vimentin; cytoskeleton, 91.9 1.5 5.2E-05 34.7 10.2 19 174-192 55-73 (77)
241 3qne_A Seryl-tRNA synthetase, 91.8 0.41 1.4E-05 51.2 8.6 24 201-224 83-106 (485)
242 1gqe_A Release factor 2, RF2; 91.7 3.4 0.00012 42.5 15.0 13 175-187 101-113 (365)
243 2ke4_A CDC42-interacting prote 91.6 1.5 5E-05 36.9 10.1 76 52-133 14-89 (98)
244 1hs7_A Syntaxin VAM3; UP-and-D 91.5 2 6.7E-05 36.1 10.8 26 198-223 66-91 (97)
245 2j69_A Bacterial dynamin-like 91.5 20 0.00068 39.7 23.0 6 49-54 313-318 (695)
246 4akv_A Sorting nexin-33; trans 91.5 14 0.00048 38.0 23.3 28 47-74 182-209 (386)
247 3qh9_A Liprin-beta-2; coiled-c 91.5 1.2 4.1E-05 36.0 8.9 58 177-234 21-78 (81)
248 1wle_A Seryl-tRNA synthetase; 91.5 1.1 3.9E-05 48.0 11.6 22 201-222 128-149 (501)
249 2ap3_A Conserved hypothetical 91.4 8.5 0.00029 36.3 16.3 64 76-139 35-103 (199)
250 1y1u_A Signal transducer and a 91.4 6.8 0.00023 42.7 17.8 49 185-233 146-200 (585)
251 3nmd_A CGMP dependent protein 91.4 0.49 1.7E-05 37.6 6.5 25 198-222 42-66 (72)
252 3fpp_A Macrolide-specific effl 91.3 0.37 1.3E-05 48.1 7.4 20 214-233 132-151 (341)
253 3lbx_A Spectrin alpha chain, e 91.3 1.6 5.4E-05 39.3 10.9 15 141-155 60-74 (161)
254 3zbh_A ESXA; unknown function, 91.3 3.4 0.00012 33.1 12.1 30 135-164 14-43 (99)
255 4e61_A Protein BIM1; EB1-like 91.2 2.6 8.9E-05 35.9 11.2 53 124-176 5-57 (106)
256 3lay_A Zinc resistance-associa 91.1 1.1 3.6E-05 41.7 9.7 6 232-237 139-144 (175)
257 2dq0_A Seryl-tRNA synthetase; 91.1 0.92 3.2E-05 48.0 10.4 27 199-225 79-105 (455)
258 4f61_I Stathmin-like domain R4 91.0 12 0.0004 36.2 18.5 195 33-234 23-223 (240)
259 2bsg_A Fibritin; viral protein 90.9 0.43 1.5E-05 50.6 7.5 32 50-81 51-82 (487)
260 1gqe_A Release factor 2, RF2; 90.9 4.2 0.00014 41.8 14.7 12 86-97 30-41 (365)
261 1hci_A Alpha-actinin 2; triple 90.9 16 0.00055 37.6 26.2 11 47-57 100-110 (476)
262 2zdi_C Prefoldin subunit alpha 90.8 1.5 5.1E-05 39.3 10.2 12 138-149 24-35 (151)
263 4dvy_P Cytotoxicity-associated 90.8 20 0.00068 38.5 20.7 38 49-86 559-603 (876)
264 4dk0_A Putative MACA; alpha-ha 90.8 0.31 1.1E-05 49.1 6.3 32 203-234 122-153 (369)
265 3cve_A Homer protein homolog 1 90.7 2.1 7.3E-05 34.0 9.7 25 137-161 7-31 (72)
266 3gwk_C SAG1039, putative uncha 90.7 5.7 0.00019 32.1 13.0 30 136-165 14-43 (98)
267 3m3w_A Pacsin3, protein kinase 90.6 3 0.0001 41.7 13.3 25 60-84 37-61 (320)
268 3fpp_A Macrolide-specific effl 90.5 0.25 8.6E-06 49.3 5.2 25 206-230 131-155 (341)
269 4avm_A Bridging integrator 2; 90.5 13 0.00043 35.6 20.7 35 51-85 31-65 (237)
270 2lw1_A ABC transporter ATP-bin 90.5 1.4 4.7E-05 36.1 8.8 15 108-122 58-72 (89)
271 3efg_A Protein SLYX homolog; x 90.5 0.96 3.3E-05 36.5 7.6 54 47-100 8-61 (78)
272 3f31_A Spectrin alpha chain, b 90.4 3.2 0.00011 36.6 11.9 17 139-155 48-64 (149)
273 1lq7_A Alpha3W; three helix bu 90.3 0.86 2.9E-05 34.1 6.6 35 108-142 4-44 (67)
274 1g8x_A Myosin II heavy chain f 90.2 4.4 0.00015 47.0 15.9 14 47-60 750-763 (1010)
275 3ni0_A Bone marrow stromal ant 90.2 3.1 0.0001 34.6 10.5 17 170-186 69-85 (99)
276 2yfa_A MCPS, methyl-accepting 90.1 12 0.00042 35.0 25.1 19 78-96 53-71 (258)
277 1ez3_A Syntaxin-1A; three heli 90.1 6.3 0.00022 33.5 13.2 17 107-123 13-29 (127)
278 4etp_A Kinesin-like protein KA 89.9 0.59 2E-05 48.8 7.6 55 179-233 7-61 (403)
279 1ses_A Seryl-tRNA synthetase; 89.9 1.2 4.1E-05 46.6 10.0 18 211-228 79-96 (421)
280 3htk_A Structural maintenance 89.8 2.4 8.1E-05 31.9 9.0 18 208-225 38-55 (60)
281 1ses_A Seryl-tRNA synthetase; 89.8 1.3 4.3E-05 46.5 10.0 24 201-224 76-99 (421)
282 1t3j_A Mitofusin 1; coiled coi 89.7 1.3 4.5E-05 37.1 8.0 25 111-135 52-76 (96)
283 2qyw_A Vesicle transport throu 89.6 2.3 7.8E-05 35.8 9.7 15 149-163 83-97 (102)
284 3lss_A Seryl-tRNA synthetase; 89.6 1.5 5E-05 46.9 10.4 23 206-228 114-136 (484)
285 2js5_A Uncharacterized protein 89.5 1.3 4.3E-05 35.2 7.4 59 131-192 4-62 (71)
286 1t3j_A Mitofusin 1; coiled coi 89.5 1.3 4.3E-05 37.2 7.8 41 101-141 49-89 (96)
287 3csx_A Putative uncharacterize 89.5 0.92 3.2E-05 36.8 6.7 62 130-194 15-76 (81)
288 2q6q_A Spindle POLE BODY compo 89.1 2.7 9.2E-05 32.9 8.7 56 172-227 7-62 (74)
289 2k48_A Nucleoprotein; viral pr 89.1 2.1 7.1E-05 36.2 8.8 26 63-88 38-63 (107)
290 2xdj_A Uncharacterized protein 89.0 1.6 5.5E-05 35.6 8.0 19 79-97 25-43 (83)
291 3m3w_A Pacsin3, protein kinase 89.0 19 0.00066 35.7 18.6 17 68-84 38-54 (320)
292 1ik9_A DNA repair protein XRCC 89.0 6.5 0.00022 37.4 13.4 35 53-87 125-159 (213)
293 4etp_A Kinesin-like protein KA 88.8 1.1 3.8E-05 46.6 8.7 56 170-225 5-60 (403)
294 3m9b_A Proteasome-associated A 88.8 0.35 1.2E-05 47.2 4.5 38 194-231 59-96 (251)
295 2xv5_A Lamin-A/C; structural p 88.8 2.1 7.3E-05 34.1 8.3 53 180-232 10-62 (74)
296 1jcd_A Major outer membrane li 88.7 1.5 5.3E-05 32.6 7.0 45 53-97 4-48 (52)
297 1d7m_A Cortexillin I; coiled-c 88.7 9.1 0.00031 31.5 14.8 15 102-116 42-56 (101)
298 3he5_B Synzip2; heterodimeric 88.4 1 3.6E-05 32.1 5.5 39 195-233 9-47 (52)
299 3rrk_A V-type ATPase 116 kDa s 88.4 2.9 9.8E-05 42.2 11.3 36 47-82 93-128 (357)
300 1s94_A S-syntaxin; three helix 88.3 5 0.00017 36.6 11.9 18 107-124 44-61 (180)
301 4g2k_A General control protein 88.2 6.2 0.00021 34.2 11.3 13 108-120 23-35 (125)
302 3he5_B Synzip2; heterodimeric 88.1 1.7 5.7E-05 31.0 6.4 40 58-97 8-47 (52)
303 4dvy_P Cytotoxicity-associated 88.1 23 0.00079 38.1 17.8 15 220-234 783-797 (876)
304 3ni0_A Bone marrow stromal ant 88.1 8.4 0.00029 32.0 11.6 6 151-156 74-79 (99)
305 3onj_A T-snare VTI1; helix, HA 88.1 3.6 0.00012 34.3 9.7 22 147-168 68-90 (97)
306 3lss_A Seryl-tRNA synthetase; 87.9 2.9 9.8E-05 44.7 11.3 29 198-226 113-141 (484)
307 1gd2_E Transcription factor PA 87.9 0.98 3.4E-05 35.7 5.8 11 111-121 55-65 (70)
308 3m9b_A Proteasome-associated A 87.9 0.5 1.7E-05 46.1 4.9 18 107-124 76-93 (251)
309 2dq3_A Seryl-tRNA synthetase; 87.4 0.52 1.8E-05 49.5 5.2 12 215-226 87-98 (425)
310 3rrk_A V-type ATPase 116 kDa s 87.3 26 0.00087 35.1 19.5 28 177-204 228-255 (357)
311 3g9g_A Suppressor of yeast pro 87.3 25 0.00084 34.9 18.4 13 216-228 257-269 (287)
312 2c5k_T Syntaxin TLG1, T-snare 87.2 6.9 0.00024 32.5 11.0 15 51-65 11-25 (95)
313 3a7o_A Autophagy protein 16; c 87.2 4.5 0.00016 31.8 9.0 23 208-230 51-73 (75)
314 2zuo_A MVP, major vault protei 87.2 44 0.0015 37.8 22.9 12 218-229 791-802 (861)
315 3a7o_A Autophagy protein 16; c 87.1 3.1 0.00011 32.8 8.0 31 44-74 9-39 (75)
316 3ilw_A DNA gyrase subunit A; D 86.8 5.9 0.0002 42.0 12.7 23 176-198 417-439 (470)
317 2iub_A CORA, divalent cation t 86.8 11 0.00036 38.3 14.5 146 93-246 182-329 (363)
318 1vcs_A Vesicle transport throu 86.7 4 0.00014 34.3 9.3 41 103-143 42-87 (102)
319 1g8x_A Myosin II heavy chain f 86.7 2.6 8.8E-05 49.0 10.8 50 140-189 889-940 (1010)
320 2odv_A Plectin 1, HD1; plakin 86.6 23 0.0008 33.9 22.2 20 214-233 201-220 (235)
321 2pih_A Protein YMCA; regulate 86.5 9.8 0.00033 34.1 12.4 14 149-162 45-58 (151)
322 3u06_A Protein claret segregat 86.5 1.5 5E-05 45.9 7.9 55 179-233 7-61 (412)
323 2a3d_A Protein (de novo three- 86.5 3.2 0.00011 31.5 7.5 58 76-141 4-69 (73)
324 2d4y_A HAP1, flagellar HOOK-as 86.5 20 0.00069 37.5 16.8 134 70-208 9-148 (463)
325 3zbh_A ESXA; unknown function, 86.4 11 0.00038 30.0 11.8 20 144-163 16-35 (99)
326 1ik9_A DNA repair protein XRCC 86.4 7.9 0.00027 36.8 12.3 23 71-93 136-158 (213)
327 2xdj_A Uncharacterized protein 86.2 2.2 7.6E-05 34.8 7.1 28 71-98 24-51 (83)
328 3he5_A Synzip1; heterodimeric 86.1 3.3 0.00011 29.2 6.9 42 56-97 6-47 (49)
329 2qyw_A Vesicle transport throu 86.1 14 0.00048 30.9 12.5 18 208-225 83-100 (102)
330 3pe0_A Plectin; cytoskeleton, 86.0 27 0.00093 34.2 20.4 31 204-234 151-181 (283)
331 3opc_A Uncharacterized protein 86.0 18 0.0006 31.9 14.4 14 217-230 117-130 (154)
332 3rmi_A Chorismate mutase prote 85.9 16 0.00053 31.2 13.7 36 131-166 13-48 (114)
333 3m91_A Proteasome-associated A 85.6 2.6 8.8E-05 31.3 6.6 32 198-229 18-49 (51)
334 2etd_A LEMA protein; bromodoma 85.6 22 0.00074 32.6 14.6 22 177-198 105-126 (171)
335 4dvz_A Cytotoxicity-associated 85.5 37 0.0013 35.2 22.0 13 148-160 479-491 (569)
336 3efg_A Protein SLYX homolog; x 85.4 2 6.7E-05 34.6 6.4 43 182-224 14-56 (78)
337 2xcs_B DNA gyrase subunit B, D 85.4 3.9 0.00013 45.4 10.9 23 176-198 638-660 (692)
338 2wps_A Trimeric autotransporte 85.4 9.7 0.00033 32.0 10.7 80 49-128 2-98 (107)
339 2cly_A ATP synthase B chain, m 85.4 9.1 0.00031 36.5 12.1 10 19-29 14-23 (214)
340 2p01_A Alpha-2-macroglobulin r 85.4 11 0.00036 38.0 13.0 26 204-229 289-314 (323)
341 3onj_A T-snare VTI1; helix, HA 85.3 15 0.0005 30.5 12.8 24 206-229 68-92 (97)
342 4dci_A Uncharacterized protein 85.2 6.2 0.00021 35.6 10.3 11 176-186 74-84 (150)
343 3thf_A Protein shroom; coiled- 85.2 24 0.00083 32.9 25.5 35 127-161 84-118 (190)
344 2j1d_G DAAM1, disheveled-assoc 85.2 16 0.00056 38.6 15.4 15 107-121 300-314 (483)
345 2q13_A DCC-interacting protein 85.1 34 0.0012 34.5 24.7 37 50-86 18-54 (385)
346 2ke4_A CDC42-interacting prote 85.0 11 0.00039 31.5 11.2 18 175-192 62-79 (98)
347 1zww_A SH3-containing GRB2-lik 85.0 28 0.00095 33.4 22.5 27 45-71 30-56 (256)
348 3aon_A V-type sodium ATPase su 84.5 28 0.00095 33.0 16.5 28 139-166 146-173 (217)
349 1xaw_A Occludin; coiled-coil, 84.3 17 0.00059 32.3 12.6 25 121-145 57-81 (140)
350 2y3a_B Phosphatidylinositol 3- 84.3 4.1 0.00014 40.9 9.6 57 175-231 90-146 (302)
351 4fi5_A Nucleoprotein; structur 84.2 4.8 0.00016 34.5 8.5 13 47-59 23-35 (113)
352 4ev6_A Magnesium transport pro 84.0 19 0.00064 36.0 14.6 10 237-246 296-305 (339)
353 2inr_A DNA topoisomerase 4 sub 84.0 3.2 0.00011 44.5 9.2 45 176-227 455-499 (514)
354 2p01_A Alpha-2-macroglobulin r 83.9 38 0.0013 34.0 16.9 60 174-233 237-311 (323)
355 1deb_A APC protein, adenomatou 83.8 3.8 0.00013 30.2 6.6 21 173-193 8-28 (54)
356 2f1m_A Acriflavine resistance 83.8 5.4 0.00019 38.3 10.2 15 215-229 117-131 (277)
357 4dvz_A Cytotoxicity-associated 83.7 44 0.0015 34.6 19.9 38 49-86 299-343 (569)
358 3vp9_A General transcriptional 83.7 1.4 5E-05 36.6 5.0 13 216-228 74-86 (92)
359 3fav_B ESAT-6, 6 kDa early sec 83.6 5.3 0.00018 32.0 8.5 24 140-163 15-38 (94)
360 1sfc_B Protein (syntaxin 1A), 83.6 5.3 0.00018 32.2 8.3 58 174-231 20-77 (83)
361 2dnx_A Syntaxin-12; snare, HAB 83.5 12 0.00042 32.5 11.4 27 48-74 12-38 (130)
362 2vs0_A Virulence factor ESXA; 83.5 13 0.00044 29.5 10.9 24 207-230 64-87 (97)
363 2q12_A DIP13 alpha, DCC-intera 83.5 32 0.0011 32.9 26.5 50 50-99 18-67 (265)
364 3d5a_X RF1, peptide chain rele 83.4 3.8 0.00013 42.0 9.1 10 111-120 8-17 (354)
365 3vem_A Helicase protein MOM1; 83.2 11 0.00038 32.3 10.5 65 156-226 37-102 (115)
366 3a5c_G V-type ATP synthase sub 83.2 8.8 0.0003 36.6 11.1 17 177-193 169-185 (223)
367 1zvu_A Topoisomerase IV subuni 83.0 4 0.00014 45.5 9.7 45 176-227 403-447 (716)
368 3d5a_X RF1, peptide chain rele 83.0 4.9 0.00017 41.2 9.7 17 82-98 4-20 (354)
369 2w6a_A ARF GTPase-activating p 82.9 5.6 0.00019 30.3 7.4 39 190-228 21-59 (63)
370 3ra3_B P2F; coiled coil domain 82.8 1 3.4E-05 28.4 2.8 24 62-85 2-25 (28)
371 1yke_B RNA polymerase II holoe 82.6 4.6 0.00016 36.4 8.4 29 128-156 97-125 (151)
372 2ykt_A Brain-specific angiogen 82.6 37 0.0013 32.9 18.7 168 63-235 73-252 (253)
373 1gs9_A Apolipoprotein E, APOE4 82.5 3.7 0.00013 37.5 7.8 24 79-102 64-87 (165)
374 3sjb_C Golgi to ER traffic pro 82.4 3.3 0.00011 34.4 6.7 27 172-198 53-79 (93)
375 2w6b_A RHO guanine nucleotide 82.4 4.9 0.00017 30.1 6.8 31 182-212 17-47 (56)
376 3u0c_A Invasin IPAB, 62 kDa an 82.3 30 0.001 31.7 18.8 24 139-162 119-142 (201)
377 1r8i_A TRAC; VIRB5, helical bu 82.3 1.5 5.1E-05 41.6 5.3 25 71-95 19-43 (213)
378 1n7s_B Syntaxin 1A; neuronal s 82.1 13 0.00045 28.6 9.8 50 180-229 17-66 (68)
379 3l39_A Putative PHOU-like phos 81.9 35 0.0012 32.2 16.7 24 75-98 57-80 (227)
380 1gk6_A Vimentin; intermediate 81.8 5.2 0.00018 30.3 7.1 51 173-230 5-55 (59)
381 4ioe_A Secreted protein ESXB; 81.5 18 0.00061 28.6 11.2 19 144-162 23-41 (93)
382 2xkj_E Topoisomerase IV; type 81.5 9 0.00031 43.0 11.8 39 190-228 704-742 (767)
383 1ykh_B RNA polymerase II holoe 81.4 10 0.00034 33.4 10.0 7 87-93 70-76 (132)
384 4dci_A Uncharacterized protein 81.4 12 0.00042 33.7 10.6 14 109-122 32-45 (150)
385 3u0c_A Invasin IPAB, 62 kDa an 81.4 32 0.0011 31.5 16.3 43 128-170 101-143 (201)
386 3b5n_B Protein SSO1; snare com 81.4 12 0.00043 28.8 9.5 39 191-229 26-64 (69)
387 4a3a_A Amphiphysin; structural 81.4 39 0.0013 32.4 22.6 19 177-195 167-185 (243)
388 4aj5_1 SKA3, spindle and kinet 81.3 23 0.00079 29.7 11.4 23 205-227 76-98 (101)
389 1qvr_A CLPB protein; coiled co 81.3 18 0.00061 40.8 14.6 12 217-228 565-576 (854)
390 3ter_A Mammalian stromal inter 81.3 23 0.00077 31.4 12.0 100 74-173 6-126 (136)
391 1joc_A EEA1, early endosomal a 81.0 6.6 0.00023 34.1 8.6 10 226-235 55-64 (125)
392 1kmi_Z CHEZ, chemotaxis protei 81.0 26 0.00088 33.2 13.4 11 88-98 46-56 (214)
393 4dzn_A Coiled-coil peptide CC- 80.9 1.4 4.9E-05 28.7 3.0 28 75-102 3-30 (33)
394 1gs9_A Apolipoprotein E, APOE4 80.7 28 0.00094 31.7 13.0 13 171-183 131-143 (165)
395 1kd8_B GABH BLL, GCN4 acid bas 80.4 3.7 0.00013 28.1 5.1 31 54-84 2-32 (36)
396 1sum_B Phosphate transport sys 80.4 17 0.00059 34.0 12.1 150 86-235 5-164 (235)
397 3c9i_A Tail needle protein GP2 80.3 17 0.00058 34.3 11.4 70 48-121 79-148 (242)
398 1jth_B Syntaxin 1A; coiled-coi 80.3 13 0.00045 29.2 9.5 46 186-231 21-66 (77)
399 1gl2_B Syntaxin 7; membrane pr 80.3 14 0.00046 28.3 9.2 54 177-230 11-64 (65)
400 2lem_A Apolipoprotein A-I; lip 80.3 13 0.00046 35.0 11.2 155 49-207 23-213 (216)
401 2ycu_A Non muscle myosin 2C, a 80.2 2.9 9.8E-05 48.5 7.6 148 54-203 844-994 (995)
402 2d4y_A HAP1, flagellar HOOK-as 80.2 52 0.0018 34.3 16.8 113 118-230 7-123 (463)
403 4ani_A Protein GRPE; chaperone 80.1 31 0.0011 32.8 13.5 89 48-145 61-155 (213)
404 1qvr_A CLPB protein; coiled co 80.1 18 0.00062 40.8 14.1 171 45-218 331-510 (854)
405 3ra3_A P1C; coiled coil domain 80.0 0.86 2.9E-05 28.7 1.7 28 61-88 1-28 (28)
406 1kd8_A GABH AIV, GCN4 acid bas 80.0 2.7 9.3E-05 28.7 4.3 35 53-87 1-35 (36)
407 2z0v_A SH3-containing GRB2-lik 79.9 42 0.0014 31.8 20.7 170 43-214 12-230 (240)
408 4ani_A Protein GRPE; chaperone 79.7 37 0.0013 32.2 13.9 88 124-211 60-155 (213)
409 3fav_A ESAT-6-like protein ESX 79.5 9.6 0.00033 31.0 8.8 84 132-215 2-94 (101)
410 3s9g_A Protein hexim1; cyclin 79.5 13 0.00044 31.2 9.2 57 119-175 33-89 (104)
411 2w6b_A RHO guanine nucleotide 79.5 12 0.00043 27.9 8.2 49 171-219 6-54 (56)
412 1gmj_A ATPase inhibitor; coile 79.5 10 0.00036 30.9 8.5 57 175-231 23-79 (84)
413 3ryc_E Stathmin-4; alpha-tubul 79.4 29 0.001 30.9 12.2 100 32-132 30-141 (143)
414 3vem_A Helicase protein MOM1; 79.3 18 0.00062 31.1 10.4 71 58-128 37-108 (115)
415 3dyt_A Sorting nexin-9; 3-heli 79.3 57 0.0019 33.0 21.6 179 49-229 171-355 (366)
416 1ecm_A Endo-oxabicyclic transi 79.2 27 0.00091 29.2 12.6 84 131-214 6-93 (109)
417 1zbt_A RF-1, peptide chain rel 79.2 5.1 0.00017 41.3 8.3 90 81-170 17-113 (371)
418 2wps_A Trimeric autotransporte 79.2 27 0.00094 29.3 15.0 95 104-198 4-99 (107)
419 3kqg_A Langerin, C-type lectin 79.2 2 7E-05 38.6 4.9 45 155-199 3-47 (182)
420 3tkl_B LIDA protein, substrate 79.0 42 0.0014 31.9 13.7 171 48-219 16-231 (267)
421 3u06_A Protein claret segregat 78.9 4.9 0.00017 41.9 8.3 55 169-223 4-58 (412)
422 2gtv_X CM, chorismate mutase; 78.9 25 0.00084 29.6 11.2 88 131-218 4-103 (104)
423 2zuo_A MVP, major vault protei 78.8 93 0.0032 35.2 22.9 152 60-212 648-802 (861)
424 3s9g_A Protein hexim1; cyclin 78.8 14 0.00048 30.9 9.2 62 140-204 33-94 (104)
425 1kmi_Z CHEZ, chemotaxis protei 78.8 24 0.00081 33.5 12.4 152 56-215 15-166 (214)
426 1deb_A APC protein, adenomatou 78.7 13 0.00044 27.4 7.9 50 118-167 5-54 (54)
427 2ve7_C Kinetochore protein NUF 78.6 2.3 8E-05 41.4 5.4 84 147-230 120-203 (250)
428 2yy0_A C-MYC-binding protein; 78.6 3.9 0.00013 30.5 5.3 31 130-160 19-49 (53)
429 2yy0_A C-MYC-binding protein; 78.3 3.7 0.00013 30.6 5.2 33 137-169 19-51 (53)
430 3ter_A Mammalian stromal inter 78.2 22 0.00074 31.5 10.9 106 105-210 5-125 (136)
431 1qoy_A Hemolysin E; toxin, mem 78.2 59 0.002 32.6 16.8 142 80-221 22-172 (318)
432 3qwe_A GMIP, GEM-interacting p 78.2 55 0.0019 32.3 23.6 171 53-226 24-221 (279)
433 1t72_A Phosphate transport sys 78.2 42 0.0014 30.8 15.9 153 83-235 6-168 (227)
434 4gfh_A DNA topoisomerase 2; to 78.1 2.1 7.3E-05 50.4 5.8 183 39-223 978-1177(1177)
435 2d1l_A Metastasis suppressor p 78.1 53 0.0018 32.0 18.6 163 70-232 6-189 (253)
436 4aj5_K Spindle and kinetochore 78.1 18 0.0006 31.5 10.0 92 105-197 4-97 (123)
437 3frt_A Charged multivesicular 78.0 34 0.0012 32.5 13.2 111 112-222 9-133 (218)
438 2de0_X Alpha-(1,6)-fucosyltran 77.9 6.9 0.00023 42.1 9.3 120 34-154 8-137 (526)
439 4dzn_A Coiled-coil peptide CC- 77.7 4.6 0.00016 26.3 4.7 30 169-198 3-32 (33)
440 2fcw_A Alpha-2-macroglobulin r 77.6 17 0.0006 30.9 9.7 77 150-228 23-99 (109)
441 1oxz_A ADP-ribosylation factor 77.3 20 0.00067 33.4 11.0 134 20-158 3-159 (186)
442 3f31_A Spectrin alpha chain, b 77.3 36 0.0012 29.6 13.9 124 82-206 16-148 (149)
443 3f1i_H Hepatocyte growth facto 77.2 31 0.001 28.8 12.4 83 104-186 2-98 (98)
444 3vmx_A Voltage-gated hydrogen 77.0 10 0.00034 27.7 6.9 42 187-228 2-43 (48)
445 4i0x_B ESAT-6-like protein MAB 77.0 12 0.00041 30.8 8.7 88 128-215 9-100 (103)
446 3a2a_A Voltage-gated hydrogen 77.0 7.5 0.00026 29.1 6.3 43 186-228 8-50 (58)
447 1j1d_B Troponin T, TNT; THIN f 76.9 11 0.00036 32.2 8.3 81 90-170 6-89 (106)
448 3a5c_G V-type ATP synthase sub 76.8 49 0.0017 31.4 14.0 175 50-225 13-189 (223)
449 2i0m_A Phosphate transport sys 76.8 22 0.00077 32.5 11.5 150 86-235 5-164 (216)
450 2w6a_A ARF GTPase-activating p 76.7 18 0.00061 27.5 8.4 50 174-223 12-61 (63)
451 3ehh_A Sensor kinase (YOCF pro 76.7 20 0.00068 32.2 10.9 93 49-141 6-107 (218)
452 3he5_A Synzip1; heterodimeric 76.6 10 0.00035 26.7 6.6 45 177-221 5-49 (49)
453 2inr_A DNA topoisomerase 4 sub 76.6 20 0.0007 38.4 12.3 115 51-166 374-497 (514)
454 3d2f_A Heat shock protein homo 76.6 19 0.00064 39.8 12.6 140 52-193 526-667 (675)
455 2ic9_A Nucleocapsid protein; h 76.5 15 0.00053 30.5 8.9 73 138-210 6-80 (96)
456 1u2m_A Histone-like protein HL 76.5 1.3 4.4E-05 39.0 2.6 104 125-231 11-114 (143)
457 3uux_B Mitochondrial division 76.5 12 0.00041 36.2 9.4 73 48-120 151-226 (242)
458 1wlq_A Geminin; coiled-coil; 2 76.5 21 0.00071 29.0 9.4 60 128-187 22-81 (83)
459 1t2k_D Cyclic-AMP-dependent tr 76.5 7.8 0.00027 29.3 6.7 42 56-97 18-59 (61)
460 4h8s_A DCC-interacting protein 76.4 70 0.0024 32.5 27.2 186 48-233 53-284 (407)
461 1n7s_B Syntaxin 1A; neuronal s 76.3 13 0.00045 28.6 8.2 63 174-236 4-66 (68)
462 1lq7_A Alpha3W; three helix bu 76.2 6.9 0.00023 29.2 6.0 61 169-229 3-67 (67)
463 2f1m_A Acriflavine resistance 76.2 5.2 0.00018 38.4 7.1 74 140-213 56-129 (277)
464 1sfc_B Protein (syntaxin 1A), 76.0 9.6 0.00033 30.6 7.5 74 163-236 2-75 (83)
465 2l5g_B Putative uncharacterize 75.9 5.2 0.00018 28.4 4.9 34 178-211 5-38 (42)
466 3b5n_B Protein SSO1; snare com 75.8 14 0.00047 28.6 8.2 63 174-236 2-64 (69)
467 2ve7_C Kinetochore protein NUF 75.6 1.9 6.4E-05 42.1 3.7 83 88-170 120-202 (250)
468 1jth_B Syntaxin 1A; coiled-coi 75.4 14 0.00046 29.2 8.2 63 174-236 2-64 (77)
469 1zxa_A CGMP-dependent protein 75.3 4.1 0.00014 31.9 4.8 42 192-233 14-55 (67)
470 1ykh_B RNA polymerase II holoe 75.3 19 0.00067 31.5 9.9 62 147-208 53-125 (132)
471 3fhn_A Protein transport prote 75.3 23 0.00077 39.5 12.6 102 131-233 11-137 (706)
472 3mxz_A Tubulin-specific chaper 75.0 32 0.0011 29.6 10.9 105 129-233 7-111 (116)
473 3fx0_A NF-kappa-B essential mo 74.8 0.21 7.3E-06 41.6 -2.7 89 127-215 7-95 (96)
474 4g2k_A General control protein 74.8 31 0.001 29.9 10.6 87 55-141 16-125 (125)
475 2cly_A ATP synthase B chain, m 74.8 38 0.0013 32.2 12.5 118 91-210 84-203 (214)
476 4fm3_A Uncharacterized hypothe 74.8 28 0.00096 29.1 10.1 81 87-167 6-94 (98)
477 2pih_A Protein YMCA; regulate 74.7 31 0.0011 30.7 11.3 106 50-160 8-116 (151)
478 2nps_B Syntaxin 13, vesicle-as 74.7 19 0.00064 27.9 8.7 58 174-231 5-62 (71)
479 1t98_A KICB protein, chromosom 74.6 63 0.0022 31.3 13.8 138 57-194 124-263 (287)
480 1joc_A EEA1, early endosomal a 74.5 20 0.0007 30.9 9.8 57 106-165 4-60 (125)
481 3obv_E Protein diaphanous homo 74.5 35 0.0012 35.9 13.5 151 48-198 251-414 (457)
482 4b6x_A AVRRPS4, avirulence pro 74.4 32 0.0011 27.7 10.0 63 141-208 26-88 (90)
483 3swy_A Cyclic nucleotide-gated 74.3 6.1 0.00021 28.7 5.2 45 78-122 2-46 (46)
484 3sjb_C Golgi to ER traffic pro 74.3 8.1 0.00028 32.1 6.6 56 106-161 23-87 (93)
485 2iaz_A Hypothetical protein SP 74.2 37 0.0013 28.3 11.2 99 108-222 2-103 (113)
486 4akv_A Sorting nexin-33; trans 74.1 82 0.0028 32.2 24.4 171 49-219 191-379 (386)
487 3euh_A Protein KICB, chromosom 74.0 87 0.003 32.5 16.5 179 56-234 123-313 (440)
488 2wt7_A Proto-oncogene protein 73.9 9.9 0.00034 29.0 6.7 42 56-97 19-60 (63)
489 2oxj_A Hybrid alpha/beta pepti 73.7 5.5 0.00019 26.9 4.4 31 53-83 1-31 (34)
490 2c5k_T Syntaxin TLG1, T-snare 73.6 20 0.0007 29.6 9.1 72 115-192 12-92 (95)
491 1zvu_A Topoisomerase IV subuni 73.6 21 0.00073 39.7 11.8 112 51-166 325-445 (716)
492 4ioe_A Secreted protein ESXB; 73.5 20 0.00067 28.3 8.9 76 88-163 12-89 (93)
493 3thf_A Protein shroom; coiled- 73.5 59 0.002 30.3 24.1 167 69-236 14-188 (190)
494 2zxx_A Geminin; coiled-coil, c 73.5 27 0.00092 28.1 9.3 60 128-187 18-77 (79)
495 3sja_C Golgi to ER traffic pro 73.2 13 0.00044 28.9 7.1 52 148-199 3-56 (65)
496 1hjb_A Ccaat/enhancer binding 73.0 27 0.00092 28.6 9.5 62 111-172 17-78 (87)
497 3n27_A Fusion glycoprotein F0, 72.9 20 0.00068 28.8 8.3 63 130-192 6-77 (80)
498 1gl2_B Syntaxin 7; membrane pr 72.8 12 0.0004 28.7 7.0 62 175-236 2-63 (65)
499 1uix_A RHO-associated kinase; 72.8 28 0.00096 27.5 9.1 63 51-113 2-64 (71)
500 1s1c_X RHO-associated, coiled- 72.6 24 0.00083 27.8 8.7 63 94-158 1-67 (71)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.07 E-value=9.8e-08 Score=91.05 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQIL 93 (503)
Q Consensus 51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L 93 (503)
|..++..+..++..+..+...|..++..++.++..+..++..+
T Consensus 4 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~ 46 (284)
T 1c1g_A 4 IKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSL 46 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433333333333
No 2
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.89 E-value=2e-08 Score=117.03 Aligned_cols=154 Identities=10% Similarity=0.111 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 010712 68 ENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVARE 147 (503)
Q Consensus 68 enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erq 147 (503)
.+.+|+.++.+|+++|+..+.+...|+..+.+++...+.++.+|++.+++|+....+++.++.++..++.|+.+++.+.+
T Consensus 922 ~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~ 1001 (1080)
T 2dfs_A 922 LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELH 1001 (1080)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555554444444444444443444444455555544444444433344444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 148 ELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 227 (503)
Q Consensus 148 eLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELe 227 (503)
++..+...|++++++++. ++..++..|++|.+.|+++++.++..+.+..+++. +.....+.++...|+.|++
T Consensus 1002 ~~~ke~~~lee~~~~~~~------~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 1073 (1080)
T 2dfs_A 1002 QTQTEKKTIEEWADKYKH------ETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEIT--ETMEKKLVEETKQLELDLN 1073 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 444444444444433332 33344555555555555555544433333333221 1112223344445555554
Q ss_pred hc
Q 010712 228 NA 229 (503)
Q Consensus 228 kl 229 (503)
+.
T Consensus 1074 ~~ 1075 (1080)
T 2dfs_A 1074 DE 1075 (1080)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.89 E-value=2.7e-09 Score=125.67 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010712 52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG 98 (503)
Q Consensus 52 EqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~ 98 (503)
+.++..+..++..+..++.++...+..++.++..++.++..++.++.
T Consensus 856 ~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~ 902 (1184)
T 1i84_S 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQ 902 (1184)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555544444443
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.87 E-value=3e-09 Score=125.21 Aligned_cols=49 Identities=20% Similarity=0.202 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI 97 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL 97 (503)
..++++|+.+..++..++.++..+..++..|++++..++.+++.....+
T Consensus 860 ~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l 908 (1184)
T 1i84_S 860 QAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELY 908 (1184)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777776666666666666666666665555554444433
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.75 E-value=2.3e-06 Score=84.49 Aligned_cols=112 Identities=12% Similarity=0.190 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPV 128 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~L 128 (503)
+.++.+|..+..++..|-.++..|..++..++.++..++.++..++.++. ..+.++..+.+++.+.+..+.... -
T Consensus 14 Q~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~----~~e~~i~~~~~ri~~~~~~l~~v~-~ 88 (256)
T 3na7_A 14 SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVS----KNEQTLQDTNAKIASIQKKMSEIK-S 88 (256)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCS-S
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHccC-C
Confidence 33444444444444444444444444444444444444444444444332 344455666666666665554211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 129 KLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT 165 (503)
Q Consensus 129 k~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~ 165 (503)
..|++.+..|++.+...+..++.++.+++.+++.++.
T Consensus 89 ~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~ 125 (256)
T 3na7_A 89 ERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSE 125 (256)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1334444444444444444444544444444444333
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=98.64 E-value=4.1e-06 Score=78.95 Aligned_cols=54 Identities=15% Similarity=0.118 Sum_probs=17.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhccccc
Q 010712 180 LRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYI---TMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 180 L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~---sm~rEIekLraELekle~el 233 (503)
|......+...++.+..++....++..=|+.+|. .|..+++.|+.|+..|+.++
T Consensus 121 lEr~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe~l~~~~QRLkdE~rDLk~El 177 (189)
T 2v71_A 121 LERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQEL 177 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444443333332 44555556666666655554
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.63 E-value=1.8e-06 Score=85.14 Aligned_cols=127 Identities=15% Similarity=0.183 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHH-
Q 010712 62 MQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAE----PVKLEFQKSK- 136 (503)
Q Consensus 62 Iq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le----~Lk~ELeqLr- 136 (503)
+|.+..++.+|...+..|..+|+.++.++..++..+..++ .++.++..++.+++.++..+. ..+..+..++
T Consensus 13 LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~----~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~ 88 (256)
T 3na7_A 13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLE----EEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKS 88 (256)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 5555555566666666666666666666666655554332 344455555555555444322 2222222221
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHH
Q 010712 137 -TEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEK 195 (503)
Q Consensus 137 -aELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ek 195 (503)
.|++.+..++..+..++..|+.+|..+..+ +..+..+++.+..++..++.+++..+
T Consensus 89 ~kE~~aL~kEie~~~~~i~~lE~eile~~e~---ie~~~~~l~~~~~~l~~~~~~l~~~~ 145 (256)
T 3na7_A 89 ERELRSLNIEEDIAKERSNQANREIENLQNE---IKRKSEKQEDLKKEMLELEKLALELE 145 (256)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234444444444444444444444433332 22334444444455544444444443
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.52 E-value=1.3e-06 Score=101.75 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 141 NLVVAREELIAKVHQLTQDLQRAHTD 166 (503)
Q Consensus 141 qL~~erqeLe~qiq~L~~ELqrlk~e 166 (503)
++..++.+|+.++++|+++++++..+
T Consensus 981 ~~~~~v~~L~~e~~~l~~~~~~~~ke 1006 (1080)
T 2dfs_A 981 NATNRVLSLQEEIAKLRKELHQTQTE 1006 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444443333
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.42 E-value=2.2e-05 Score=99.37 Aligned_cols=47 Identities=23% Similarity=0.244 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712 51 MEQKIASQHVEMQKLATENQRL---AATHGTLRQELAAAQHELQILHGQI 97 (503)
Q Consensus 51 LEqeIe~~~~EIq~Le~enqrL---a~e~~~LrqeLa~lq~EL~~L~~qL 97 (503)
++++.+.+...+++|..=+.|| .++++.|+.+|+..+.+|+..+++.
T Consensus 1908 l~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea 1957 (3245)
T 3vkg_A 1908 INEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQA 1957 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433333 3344555555555555554444433
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.41 E-value=1.1e-05 Score=102.09 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHh
Q 010712 216 ATEVEKLRAELMN 228 (503)
Q Consensus 216 ~rEIekLraELek 228 (503)
..|.++....+++
T Consensus 2083 ~~Ek~RW~~~~~~ 2095 (3245)
T 3vkg_A 2083 NSERGRWEQQSEN 2095 (3245)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhccccHHHHHHH
Confidence 3333333333333
No 11
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=98.33 E-value=8.9e-05 Score=69.86 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=3.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 010712 207 VMEKNYITMATEVEKLRAELMNAP 230 (503)
Q Consensus 207 emEk~L~sm~rEIekLraELekle 230 (503)
.|...++.+..|+..|+.||.-+.
T Consensus 158 ~l~~~~QRLkdE~rDLk~El~v~~ 181 (189)
T 2v71_A 158 SLLVSVQRLKDEARDLRQELAVRE 181 (189)
T ss_dssp HHHCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555667777777777776554
No 12
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=98.30 E-value=0.00023 Score=62.64 Aligned_cols=63 Identities=11% Similarity=0.115 Sum_probs=32.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712 167 VQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229 (503)
Q Consensus 167 lqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekl 229 (503)
+.++.++.+.+.+.-.-++.|...|--++|.+++.+-..++.-...+++.-|-+.++..|.-.
T Consensus 97 iRKLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~mY 159 (167)
T 4gkw_A 97 MRKLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHY 159 (167)
T ss_dssp HHHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Confidence 334444444444433444444444444555555544445555555556666666666666543
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.24 E-value=8.9e-06 Score=88.21 Aligned_cols=42 Identities=10% Similarity=0.084 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATE 218 (503)
Q Consensus 177 Ie~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rE 218 (503)
++.+++|+.+++..++..++...++++++..+.+++..+..+
T Consensus 539 ~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 539 TEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444433
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.20 E-value=1.7e-05 Score=86.08 Aligned_cols=61 Identities=13% Similarity=0.015 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 010712 174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDR 234 (503)
Q Consensus 174 ~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~ 234 (503)
..++..++++++..+++++.++++..+++++++++.+.+..+.+|++++++++.+++.++-
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 522 LRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344455555555556666666667777777777777777888888888888888777664
No 15
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=98.05 E-value=0.00054 Score=63.19 Aligned_cols=19 Identities=32% Similarity=0.281 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010712 102 SERELQMRNLTEKIAKMEA 120 (503)
Q Consensus 102 ae~E~el~eL~eki~kLEa 120 (503)
+..+..+++|.+++..|+.
T Consensus 44 ~~~E~~~rELq~~~~~L~~ 62 (168)
T 3o0z_A 44 SQLESLNRELQERNRILEN 62 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555
No 16
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=98.04 E-value=0.0014 Score=60.46 Aligned_cols=53 Identities=19% Similarity=0.234 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 010712 175 SELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMA----TEVEKLRAELM 227 (503)
Q Consensus 175 ~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~----rEIekLraELe 227 (503)
..|..|+.|+++++..+.........+.+.+..+|++..+++ -+++.|...++
T Consensus 97 ~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~e 153 (168)
T 3o0z_A 97 ARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLE 153 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444433 33444444433
No 17
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=97.90 E-value=0.001 Score=60.73 Aligned_cols=96 Identities=9% Similarity=0.100 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 010712 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQ 206 (503)
Q Consensus 127 ~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlq 206 (503)
.+..|+..|..++..-+..+.+.+.++..+..+|+.|...+ .++...-....|.+....++....+.++++
T Consensus 55 ~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasL---------FeEAN~MVa~ar~~~~~~e~r~~~L~~ql~ 125 (154)
T 2ocy_A 55 DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL---------FDEANNMVADARKEKYAIEILNKRLTEQLR 125 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666677777777777777777777777776655432 111222222334444455566677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Q 010712 207 VMEKNYITMATEVEKLRAELMNAPN 231 (503)
Q Consensus 207 emEk~L~sm~rEIekLraELekle~ 231 (503)
+.+..|..++..+..|+.-+.+++.
T Consensus 126 e~~~~l~~lq~ql~~LK~v~~~m~~ 150 (154)
T 2ocy_A 126 EKDTLLDTLTLQLKNLKKVMHSLDN 150 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7777777777777777776666544
No 18
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=97.82 E-value=0.0089 Score=54.64 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (503)
Q Consensus 177 Ie~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELek 228 (503)
+..|+.+|+++..++...+.++..+...+..+-..|..|....-.|..+|..
T Consensus 100 v~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~ 151 (155)
T 2efr_A 100 VTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVAR 151 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444444433
No 19
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=97.79 E-value=0.0081 Score=54.90 Aligned_cols=51 Identities=14% Similarity=0.200 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLR 223 (503)
Q Consensus 173 l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLr 223 (503)
|..+|+.|..+|...+..+..+...++.....+..|...+-.+..||..|+
T Consensus 103 LEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~~ 153 (155)
T 2efr_A 103 LEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLK 153 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 333444444444444444444444444445555555555556666666554
No 20
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=97.78 E-value=0.032 Score=57.26 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010712 69 NQRLAATHGTLRQELAAAQH 88 (503)
Q Consensus 69 nqrLa~e~~~LrqeLa~lq~ 88 (503)
++.+...|+.|+++|+.+++
T Consensus 62 er~~~~rIe~L~~~L~~~s~ 81 (390)
T 1deq_A 62 DQDFTSRINKLRDSLFNYQK 81 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 34555555555555555443
No 21
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=97.76 E-value=0.022 Score=58.50 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010712 141 NLVVAREELIAKVHQLTQDL 160 (503)
Q Consensus 141 qL~~erqeLe~qiq~L~~EL 160 (503)
.|+..+.++..+|+.|+.+|
T Consensus 138 ~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 138 LLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444443
No 22
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=97.75 E-value=0.0048 Score=54.40 Aligned_cols=23 Identities=9% Similarity=-0.060 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Q 010712 179 SLRQEYHHCRGTYEYEKKFYNDH 201 (503)
Q Consensus 179 ~L~qELq~lR~ele~ekk~~~el 201 (503)
+|...|.......+.+..++-.+
T Consensus 102 ELEADLKEKDsMVe~LT~TiG~L 124 (167)
T 4gkw_A 102 ELEADLKEKDSMVESLTETIGIL 124 (167)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHhhhhHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 23
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=97.73 E-value=0.00099 Score=60.76 Aligned_cols=30 Identities=7% Similarity=0.008 Sum_probs=11.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 010712 183 EYHHCRGTYEYEKKFYNDHLESLQVMEKNY 212 (503)
Q Consensus 183 ELq~lR~ele~ekk~~~el~eqlqemEk~L 212 (503)
....|+..+......++.+..++.++..-+
T Consensus 116 r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~ 145 (154)
T 2ocy_A 116 LNKRLTEQLREKDTLLDTLTLQLKNLKKVM 145 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444444333
No 24
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=97.69 E-value=0.00044 Score=60.63 Aligned_cols=90 Identities=16% Similarity=0.307 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPV 128 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~L 128 (503)
...+..|..+..+|..+..++.+|..++..++..++..+.. ++.|+.....+
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~K----------------------------yE~E~~~r~~~ 67 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK----------------------------LQEEMLQREEA 67 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------------hHHHHHHHHHH
Confidence 45677888888888888877777777777765555444432 22334444567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 129 KLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTD 166 (503)
Q Consensus 129 k~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~e 166 (503)
+.++..++++++.+...+.+|+.+++.|+.+|.-+++-
T Consensus 68 E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~ 105 (119)
T 3ol1_A 68 ENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKL 105 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888899999999999999999999999999887653
No 25
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=97.61 E-value=0.0058 Score=54.12 Aligned_cols=104 Identities=18% Similarity=0.166 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 010712 128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE----LESLRQEYHHCRGTYEYEKKFYNDHLE 203 (503)
Q Consensus 128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~E----Ie~L~qELq~lR~ele~ekk~~~el~e 203 (503)
+..++..++..+.+....+.+|+.+...|..++..+...++.......+ .+.|...-..+...|..+...+.+...
T Consensus 18 ~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee 97 (129)
T 2fxo_A 18 MKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEE 97 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444433333322222111 222223333333444444444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712 204 SLQVMEKNYITMATEVEKLRAELMNAPN 231 (503)
Q Consensus 204 qlqemEk~L~sm~rEIekLraELekle~ 231 (503)
...++......|..++..|+.+|+.++.
T Consensus 98 ~~~~L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 98 MNAELTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555666666666666666666543
No 26
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=97.56 E-value=0.0012 Score=58.65 Aligned_cols=114 Identities=14% Similarity=0.170 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHH
Q 010712 104 RELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ-QIPALLSELESLRQ 182 (503)
Q Consensus 104 ~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elq-qi~~l~~EIe~L~q 182 (503)
.+.++.+|...+.+...+ +...+.||.+++..++.|..+++.+..+...|+..|..++.... ++..+...|..|..
T Consensus 15 y~~K~eel~~~~~~~~~~---l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~ 91 (131)
T 3tnu_A 15 FFTKTEELNREVATNSEL---VQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEE 91 (131)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555444443332 33355566666666666666666666666666666655444322 23444555666666
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 183 EYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 227 (503)
Q Consensus 183 ELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELe 227 (503)
+|.+++.+++ ....+.+++-+-...|..||..-+.-|+
T Consensus 92 eL~~~r~em~-------~ql~EYq~Ll~vKl~Ld~EIatYRkLLE 129 (131)
T 3tnu_A 92 QLAQLRCEME-------QQNQEYKILLDVKTRLEQEIATYRRLLE 129 (131)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHC
Confidence 6666665544 4444555566666677788877776553
No 27
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=97.53 E-value=0.0055 Score=54.26 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010712 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHG 95 (503)
Q Consensus 51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~ 95 (503)
-+.++.....+|..|...+.+.......|..+...+..++..|..
T Consensus 11 ~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~ 55 (129)
T 2fxo_A 11 REKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQL 55 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444433333
No 28
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=97.53 E-value=0.0015 Score=57.92 Aligned_cols=113 Identities=12% Similarity=0.185 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHH
Q 010712 104 RELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ-QIPALLSELESLRQ 182 (503)
Q Consensus 104 ~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elq-qi~~l~~EIe~L~q 182 (503)
.+.++.+|...+.+...+ +...+.||.+++..++.|..+++.+..+...|+..|..++.... ++..+...|..|..
T Consensus 13 y~~K~eel~~~~~~~~~~---l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~ 89 (129)
T 3tnu_B 13 YQTKYEELQQTAGRHGDD---LRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEE 89 (129)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555444433332 33455666666666777776666666666666666655544322 34445555666666
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 183 EYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 226 (503)
Q Consensus 183 ELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraEL 226 (503)
+|.+++.+++ ....+.+++-+-...|..||..-+.-|
T Consensus 90 eL~~~r~e~~-------~ql~EYq~LlnvKl~Ld~EIatYRkLL 126 (129)
T 3tnu_B 90 ALQKAKQDMA-------RLLREYQELMNTKLALDVEIATYRKLL 126 (129)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 6666665544 344445555555667777777766544
No 29
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=97.52 E-value=0.00094 Score=70.89 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010712 109 RNLTEKIAKMEAELKTA 125 (503)
Q Consensus 109 ~eL~eki~kLEaEL~~l 125 (503)
+.|...|.+|++++.++
T Consensus 60 rDltkrINELKnqLEdl 76 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHHTHH
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 30
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=97.47 E-value=0.0018 Score=68.85 Aligned_cols=42 Identities=17% Similarity=0.138 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYI 213 (503)
Q Consensus 172 ~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~ 213 (503)
+|+..|..|+.+|+..-+.|..|+..++++..++|.||..+.
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555554445555555555555555555555544
No 31
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=97.40 E-value=0.00084 Score=55.59 Aligned_cols=82 Identities=16% Similarity=0.239 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 77 GTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQL 156 (503)
Q Consensus 77 ~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L 156 (503)
..|+.+|..+..+-.++..++..++. .+.+-..+++.|+.....++.++..+++++..+...+.+|+.+++.|
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~-------~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL 75 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAE-------DIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESL 75 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34444454444444444443332221 12223346677888888899999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 010712 157 TQDLQRAHT 165 (503)
Q Consensus 157 ~~ELqrlk~ 165 (503)
+.+|.-+++
T Consensus 76 ~eEl~fLkk 84 (86)
T 3swk_A 76 QEEIAFLKK 84 (86)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhh
Confidence 999987763
No 32
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=97.38 E-value=0.0061 Score=51.81 Aligned_cols=40 Identities=5% Similarity=-0.044 Sum_probs=15.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 182 QEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEK 221 (503)
Q Consensus 182 qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIek 221 (503)
.+++++...+...+..+.+..+...+.|.++.+|.+.|+-
T Consensus 58 ~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriql 97 (101)
T 3u1c_A 58 DSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333334444444444444433
No 33
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=97.38 E-value=0.0068 Score=51.51 Aligned_cols=57 Identities=16% Similarity=0.164 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712 173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229 (503)
Q Consensus 173 l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekl 229 (503)
+..+|..|+..++.++.+++..+..+.+....+.+.++.....+.++..|.+.|.-+
T Consensus 42 ~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666666666666666666666666666665544
No 34
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=97.37 E-value=0.12 Score=49.94 Aligned_cols=15 Identities=20% Similarity=0.222 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhc
Q 010712 215 MATEVEKLRAELMNA 229 (503)
Q Consensus 215 m~rEIekLraELekl 229 (503)
+.+.+..|...|.+|
T Consensus 235 ~~~~~~~L~~~l~~~ 249 (251)
T 2fic_A 235 MSKLNQNLNDVLVGL 249 (251)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhh
Confidence 345556666665554
No 35
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=97.36 E-value=0.0032 Score=53.98 Aligned_cols=63 Identities=21% Similarity=0.267 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712 107 QMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQ 169 (503)
Q Consensus 107 el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqq 169 (503)
++.+|++.+.+++++++.+.-|+++++-.+.+...-+..|..+..++++|..+|..|+.++++
T Consensus 46 ~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 46 LIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 334444445555555666777777777788888888888888888888888888777766554
No 36
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=97.32 E-value=0.059 Score=49.87 Aligned_cols=94 Identities=13% Similarity=0.097 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHH
Q 010712 140 QNLVVAREELIAKVHQLTQDLQR--AHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES----LQVMEKNYI 213 (503)
Q Consensus 140 qqL~~erqeLe~qiq~L~~ELqr--lk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eq----lqemEk~L~ 213 (503)
.+......++...+.+.+..+.. .-.++..+..+.++.+.++.++...+..++.+......+... ...+...+.
T Consensus 109 ~~f~~~~~e~~~Wl~~~e~~l~~~~~g~~~~~v~~ll~~h~~~~~el~~~~~~i~~l~~~~~~L~~~~~~~~~~I~~~~~ 188 (213)
T 1cun_A 109 QQFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMK 188 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 44445555555655554433311 001223344455555555555555555555444444333321 223444455
Q ss_pred HHHHHHHHHHHHHHhccccc
Q 010712 214 TMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 214 sm~rEIekLraELekle~el 233 (503)
.+....+.|...+++.+..|
T Consensus 189 ~l~~~w~~l~~~~~~R~~~L 208 (213)
T 1cun_A 189 GLKGKVSDLEKAAAQRKAKL 208 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555444433
No 37
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=97.28 E-value=0.058 Score=53.58 Aligned_cols=45 Identities=20% Similarity=0.307 Sum_probs=19.8
Q ss_pred CCChHHHHHHHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHHH
Q 010712 45 MPPPEVMEQKIASQHVEMQK----LATE-NQRLAATHGTLRQELAAAQHE 89 (503)
Q Consensus 45 ~p~p~~LEqeIe~~~~EIq~----Le~e-nqrLa~e~~~LrqeLa~lq~E 89 (503)
.+....|.++|.....+++. ...+ .++|..+++.++++|.-...+
T Consensus 10 ~~~~e~lr~~l~~~~eel~~~L~P~~~~l~~~l~~~le~lr~~L~Py~~e 59 (273)
T 3s84_A 10 AKDSEKLKEEIGKELEELRARLLPHANEVSQKIGDNLRELQQRLEPYADQ 59 (273)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555444444433 2222 234455555666555544333
No 38
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=97.27 E-value=0.016 Score=50.67 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=13.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHH
Q 010712 99 GMKSERELQMRNLTEKIAKMEAE 121 (503)
Q Consensus 99 ~lkae~E~el~eL~eki~kLEaE 121 (503)
.+..-.+..|++|..+|..+..+
T Consensus 13 ~~~~~ye~~I~~LR~qid~~~~e 35 (119)
T 3ol1_A 13 RLGDLYEEEMRELRRQVDQLTND 35 (119)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666665553
No 39
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=97.25 E-value=0.066 Score=53.14 Aligned_cols=12 Identities=17% Similarity=-0.194 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 010712 191 YEYEKKFYNDHL 202 (503)
Q Consensus 191 le~ekk~~~el~ 202 (503)
++.+++.+.++.
T Consensus 200 ~e~l~~~l~~~~ 211 (273)
T 3s84_A 200 TEGLQKSLAELG 211 (273)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhHHHHH
Confidence 344444444443
No 40
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=97.24 E-value=0.0071 Score=63.74 Aligned_cols=30 Identities=13% Similarity=0.194 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010712 201 HLESLQVMEKNYITMATEVEKLRAELMNAP 230 (503)
Q Consensus 201 l~eqlqemEk~L~sm~rEIekLraELekle 230 (503)
..++++++|.++..+..+|+.++++|+.++
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 441 GQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345677777777788888888888877654
No 41
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=97.24 E-value=0.15 Score=48.70 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010712 138 EAQNLVVAREELIAKVHQLTQDL 160 (503)
Q Consensus 138 ELqqL~~erqeLe~qiq~L~~EL 160 (503)
|+.+|..+-.+...++..+..+|
T Consensus 120 Evr~La~~t~~~~~~I~~~i~~i 142 (213)
T 3g67_A 120 EVQNLSNETNEVTKQIVEKAREI 142 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333333
No 42
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=97.22 E-value=0.057 Score=50.28 Aligned_cols=94 Identities=5% Similarity=-0.017 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHH
Q 010712 140 QNLVVAREELIAKVHQLTQDLQR--AHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES----LQVMEKNYI 213 (503)
Q Consensus 140 qqL~~erqeLe~qiq~L~~ELqr--lk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eq----lqemEk~L~ 213 (503)
.+......++...+.+.+..+.. .-.++..+..+.++.+.++.+|......++.+......+... ...+...+.
T Consensus 112 ~qf~~~~~~~~~Wl~e~e~~~~~~~~g~dl~~v~~ll~kh~~~~~el~~~~~~i~~l~~~g~~L~~~~~~~~~~i~~~~~ 191 (216)
T 1u5p_A 112 HQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLA 191 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCSHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 44455555666666554432210 001233344555555555555555555444444444333321 234555566
Q ss_pred HHHHHHHHHHHHHHhccccc
Q 010712 214 TMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 214 sm~rEIekLraELekle~el 233 (503)
.+....+.|...+......|
T Consensus 192 ~l~~~W~~L~~~~~~R~~~L 211 (216)
T 1u5p_A 192 QFVDHWKELKQLAAARGQRL 211 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666555444
No 43
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=97.22 E-value=0.014 Score=49.44 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010712 205 LQVMEKNYITMATEVEKLRAELM 227 (503)
Q Consensus 205 lqemEk~L~sm~rEIekLraELe 227 (503)
+...++.....+.++..|.+.|.
T Consensus 74 Le~~ek~~~~AE~evasLnRriq 96 (101)
T 3u59_A 74 LEQAEKKATDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444443
No 44
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=97.16 E-value=0.014 Score=50.17 Aligned_cols=84 Identities=14% Similarity=0.254 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 010712 128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDL-QRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQ 206 (503)
Q Consensus 128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~EL-qrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlq 206 (503)
+.++|...+.....+...+.+|..+++.+..+. .+++.+..+|..++.+|..-..|+..++..++........+...+.
T Consensus 13 ~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~ 92 (107)
T 2no2_A 13 VTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFA 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444222 2344444555555566666555665555555544444444444443
Q ss_pred HHHHH
Q 010712 207 VMEKN 211 (503)
Q Consensus 207 emEk~ 211 (503)
+++.+
T Consensus 93 ~l~~E 97 (107)
T 2no2_A 93 ELEKE 97 (107)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 45
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=97.11 E-value=0.015 Score=49.32 Aligned_cols=49 Identities=6% Similarity=0.079 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL 222 (503)
Q Consensus 174 ~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekL 222 (503)
...|..+..+++.+...+...+..+....+...+.|.++.+|.+.|+-|
T Consensus 50 ~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 50 QKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444445555555555666666666666544
No 46
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=97.10 E-value=0.0058 Score=52.37 Aligned_cols=79 Identities=8% Similarity=0.151 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 010712 132 FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKN 211 (503)
Q Consensus 132 LeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~ 211 (503)
|..|+..|..+...+.+...++++|+.+|.+...++++ |.-|+++++--+.+++.++...+.+..+...++.+
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~-------I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~q 98 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMET-------VPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQ 98 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHH
Confidence 33444444444444444444455555555444444444 44444444444444444444444444433344333
Q ss_pred HHHHHH
Q 010712 212 YITMAT 217 (503)
Q Consensus 212 L~sm~r 217 (503)
+..|.+
T Consensus 99 l~~Lq~ 104 (110)
T 2v4h_A 99 LEQLQR 104 (110)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 47
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=97.05 E-value=0.29 Score=51.86 Aligned_cols=30 Identities=10% Similarity=0.232 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712 200 DHLESLQVMEKNYITMATEVEKLRAELMNA 229 (503)
Q Consensus 200 el~eqlqemEk~L~sm~rEIekLraELekl 229 (503)
.+.+++.++++.|...+..|..|..+..++
T Consensus 239 ~LLkkh~~le~~l~~~~~~I~~L~~qA~~l 268 (450)
T 3r6n_A 239 EQIKELEKEREKILEYKRQVQNLVNKSKKI 268 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555555555555443
No 48
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=97.02 E-value=0.12 Score=50.85 Aligned_cols=64 Identities=11% Similarity=0.111 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712 170 IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLE----SLQVMEKNYITMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 170 i~~l~~EIe~L~qELq~lR~ele~ekk~~~el~e----qlqemEk~L~sm~rEIekLraELekle~el 233 (503)
+..+..+.+.++.++...+..++.+......+.. ....+...+..+....+.|...++..+..|
T Consensus 250 ~~~ll~~h~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~rw~~l~~~~~~R~~~L 317 (322)
T 1u4q_A 250 IQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKL 317 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555544444433332 123344455555555555555555544444
No 49
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=97.00 E-value=0.073 Score=52.62 Aligned_cols=88 Identities=7% Similarity=0.195 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHH
Q 010712 141 NLVVAREELIAKVHQLTQDLQRA--HTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES----LQVMEKNYIT 214 (503)
Q Consensus 141 qL~~erqeLe~qiq~L~~ELqrl--k~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eq----lqemEk~L~s 214 (503)
+......++...+...+..|... -.++..+..+..+...++.||...+..++.+......+... ..++.+.+..
T Consensus 223 ~F~~~~~~l~~Wl~~~~~~l~~~~~~~d~~~~e~ll~~h~~l~~ei~~~~~~~~~l~~~g~~Ll~~~~~~~~~i~~~l~~ 302 (323)
T 3edv_A 223 RFFSMVRDLMLWMEDVIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKLLQ 302 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 33444445555555544444321 01222233344444445555554444444444333333221 2345555555
Q ss_pred HHHHHHHHHHHHHh
Q 010712 215 MATEVEKLRAELMN 228 (503)
Q Consensus 215 m~rEIekLraELek 228 (503)
+....+.|....++
T Consensus 303 L~~~w~~l~~~w~~ 316 (323)
T 3edv_A 303 LTEKRKEMIDKWED 316 (323)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555444
No 50
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=96.99 E-value=0.079 Score=49.74 Aligned_cols=29 Identities=3% Similarity=-0.042 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 010712 206 QVMEKNYITMATEVEKLRAELMNAPNVDR 234 (503)
Q Consensus 206 qemEk~L~sm~rEIekLraELekle~el~ 234 (503)
..+...+..+....+.|...++..+..|.
T Consensus 183 ~~i~~~~~~l~~~W~~L~~~~~~R~~~L~ 211 (218)
T 3edu_A 183 EAIQNKEQEVSAAWQALLDACAGRRTQLV 211 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666655555444
No 51
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=96.95 E-value=0.1 Score=51.35 Aligned_cols=11 Identities=27% Similarity=0.193 Sum_probs=4.1
Q ss_pred HHHHHHHHHHh
Q 010712 218 EVEKLRAELMN 228 (503)
Q Consensus 218 EIekLraELek 228 (503)
+++.+..=|.+
T Consensus 223 ~~~~~~~Wl~~ 233 (322)
T 1u4q_A 223 NVEEEEAWINE 233 (322)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 52
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=96.92 E-value=0.013 Score=52.49 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010712 206 QVMEKNYITMATEVEKLRAELM 227 (503)
Q Consensus 206 qemEk~L~sm~rEIekLraELe 227 (503)
.++.+++..+++++.+|+.++.
T Consensus 113 ~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 113 KELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444443
No 53
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=96.92 E-value=0.19 Score=46.64 Aligned_cols=94 Identities=10% Similarity=0.029 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHH
Q 010712 139 AQNLVVAREELIAKVHQLTQDLQR--AHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES----LQVMEKNY 212 (503)
Q Consensus 139 LqqL~~erqeLe~qiq~L~~ELqr--lk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eq----lqemEk~L 212 (503)
++.......++...+...+..|.. +-.++..+..+.++.+.++.+|...+..++.+......+.+. ...+...+
T Consensus 109 l~~F~~~~~~~~~Wl~~~E~~l~~~~~g~~~~~v~~llkkh~~f~~~l~~~~~~i~~l~~~a~~L~~~~h~~~~~I~~~~ 188 (214)
T 1s35_A 109 FQEFQKDAKQAEAILSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSDKIKEKV 188 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 444555555555555544433321 001223334444444444444444444444443333333221 12233344
Q ss_pred HHHHHHHHHHHHHHHhcccc
Q 010712 213 ITMATEVEKLRAELMNAPNV 232 (503)
Q Consensus 213 ~sm~rEIekLraELekle~e 232 (503)
..+....+.|...+++....
T Consensus 189 ~~l~~rw~~l~~~~~~R~~~ 208 (214)
T 1s35_A 189 QLIEDRHRKNNEKAQEASVL 208 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444455555544444333
No 54
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=96.85 E-value=0.026 Score=57.93 Aligned_cols=68 Identities=15% Similarity=0.163 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHH
Q 010712 72 LAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK----TAEPVKLEFQKSKTEA 139 (503)
Q Consensus 72 La~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~----~le~Lk~ELeqLraEL 139 (503)
|...+..|+.++...+...+.+...|..++.........|......+...+. .+..|+++|++++.++
T Consensus 121 l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I 192 (346)
T 2nrj_A 121 LKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSV 192 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444333444444444333332 2344555555444443
No 55
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=96.85 E-value=0.35 Score=46.19 Aligned_cols=12 Identities=17% Similarity=0.180 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 010712 55 IASQHVEMQKLA 66 (503)
Q Consensus 55 Ie~~~~EIq~Le 66 (503)
+..+...++.+.
T Consensus 9 ~~em~~~i~~i~ 20 (213)
T 3g67_A 9 FVNLNRLFQELV 20 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 56
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=96.84 E-value=0.036 Score=46.66 Aligned_cols=33 Identities=6% Similarity=0.164 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010712 198 YNDHLESLQVMEKNYITMATEVEKLRAELMNAP 230 (503)
Q Consensus 198 ~~el~eqlqemEk~L~sm~rEIekLraELekle 230 (503)
+..+.-++-++++++.++...+.-....|++|+
T Consensus 62 yn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 62 YSEFKRQQLELDDELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444445555554444445555543
No 57
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=96.84 E-value=0.1 Score=48.99 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010712 71 RLAATHGTLRQELAAAQHELQI 92 (503)
Q Consensus 71 rLa~e~~~LrqeLa~lq~EL~~ 92 (503)
.+..++..++.+|......+..
T Consensus 50 ~ll~~H~~l~~ei~~~~~~~~~ 71 (218)
T 3fb2_A 50 ALLERHQEHRTEIDARAGTFQA 71 (218)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHH
Confidence 3444455555555543333333
No 58
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=96.84 E-value=0.32 Score=45.62 Aligned_cols=162 Identities=7% Similarity=0.024 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHH
Q 010712 68 ENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLE-FQKSKTEAQNLVVAR 146 (503)
Q Consensus 68 enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~E-LeqLraELqqL~~er 146 (503)
..+.+...|..|..+|+.....|..|......+..+... .+.+++..++.....+..+..+ ...|. .|.+...+.
T Consensus 39 ~ve~llkkH~~le~ei~~~~~~v~~l~~~a~~l~~~~~~---~i~~rl~~l~~~~~~L~~~a~~R~~~L~-~L~~f~~~~ 114 (210)
T 3pdy_A 39 SVEAQLGSHRGLHQSIEEFRAKIERARSDEGQLSPATRG---AYRDCLGRLDLQYAKLLNSSKARLRSLE-SLHSFVAAA 114 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 355666777788888888888888877766554432111 2444444444433333222211 11222 455555666
Q ss_pred HHHHHHHHHHHHHHHHH--HHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 010712 147 EELIAKVHQLTQDLQRA--HTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES----LQVMEKNYITMATEVE 220 (503)
Q Consensus 147 qeLe~qiq~L~~ELqrl--k~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eq----lqemEk~L~sm~rEIe 220 (503)
.++...|.+.+..+... -.++..+..+....+.++.||...+..+..+......+... ...++..+..+....+
T Consensus 115 ~~~~~Wl~eke~~~~s~d~g~~~~~v~~l~~k~~~f~~el~~~~~~v~~l~~~~~~Ll~~~h~~~~~I~~~~~~l~~~W~ 194 (210)
T 3pdy_A 115 TKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPARPTVESFQAALQTQWS 194 (210)
T ss_dssp HHHHHHHHHHHHHHHHSCCSTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccccCCCchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Confidence 66666666665555321 12234456666667777777766666666666555555442 3345555555555555
Q ss_pred HHHHHHHhccccc
Q 010712 221 KLRAELMNAPNVD 233 (503)
Q Consensus 221 kLraELekle~el 233 (503)
.|..-+.-.+..|
T Consensus 195 ~L~~L~~~~e~hL 207 (210)
T 3pdy_A 195 WMLQLCCCIEAHL 207 (210)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 5555544444433
No 59
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=96.83 E-value=0.01 Score=49.60 Aligned_cols=67 Identities=19% Similarity=0.273 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010712 104 RELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI 170 (503)
Q Consensus 104 ~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi 170 (503)
++..|.+|++.+..++..+..+.-|+.+++-.+.+...-++.|..+..+++.|..+|..++.++.++
T Consensus 21 kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L 87 (94)
T 3jsv_C 21 KQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 87 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4556777788888888888888889999999999999999999999888888888888877766554
No 60
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=96.82 E-value=0.0055 Score=54.59 Aligned_cols=89 Identities=9% Similarity=0.082 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 010712 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQ 206 (503)
Q Consensus 127 ~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlq 206 (503)
.+..++..+..++..-+..+.+.+.++..+..+|+.|...+ .++...-....|.+....++.+..+..++.
T Consensus 43 ~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasL---------FeEAN~MVa~ar~~~~~~e~r~~~L~~ql~ 113 (135)
T 2e7s_A 43 DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL---------FDEANNLVADARMEKYAIEILNKRLTEQLR 113 (135)
T ss_dssp THHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHH---------HHHHHHHHHHTTHHHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555444321 111111122223333334444445555555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010712 207 VMEKNYITMATEVEKLRA 224 (503)
Q Consensus 207 emEk~L~sm~rEIekLra 224 (503)
+.+.-|.+++..+..|+.
T Consensus 114 e~e~ll~~lq~QL~~LK~ 131 (135)
T 2e7s_A 114 EKDMLLDTLTLQLKNLKK 131 (135)
T ss_dssp HHHHCC------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555454444444443
No 61
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=96.80 E-value=0.0035 Score=68.55 Aligned_cols=64 Identities=17% Similarity=0.326 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 101 KSERELQMRNLTEKIAKMEAELKTAEP----VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH 164 (503)
Q Consensus 101 kae~E~el~eL~eki~kLEaEL~~le~----Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk 164 (503)
+.+.+.+..+|..++..++++.+.... ....+..|..+++.++.+...|+.+..+++.++++|.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~ 397 (575)
T 2i1j_A 330 RERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLE 397 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666777777777777776654221 1122333444444444444455554444444444443
No 62
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=96.76 E-value=0.0076 Score=50.33 Aligned_cols=84 Identities=11% Similarity=0.179 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 134 KSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYI 213 (503)
Q Consensus 134 qLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~ 213 (503)
.|+..|..+...+......|++|..++.+.+.++ ..|+-|+++++--+.++..++...+.+..+...+...+.
T Consensus 6 ~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~-------E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~ 78 (94)
T 3jsv_C 6 DLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM-------ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLE 78 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3344444444444444444444444444444433 344445555555555555555555555444444444444
Q ss_pred HHHHHHHHHHH
Q 010712 214 TMATEVEKLRA 224 (503)
Q Consensus 214 sm~rEIekLra 224 (503)
.+.+++.+|..
T Consensus 79 ~lq~q~~~L~~ 89 (94)
T 3jsv_C 79 QLQREFNKLKV 89 (94)
T ss_dssp HHHHTTC----
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 63
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=96.76 E-value=0.02 Score=47.96 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=29.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLR 80 (503)
Q Consensus 47 ~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~Lr 80 (503)
+...|.+++....++|+.|+.+|+.|+.++..++
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999988877664
No 64
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=96.75 E-value=0.42 Score=50.65 Aligned_cols=30 Identities=13% Similarity=0.102 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 010712 205 LQVMEKNYITMATEVEKLRAELMNAPNVDR 234 (503)
Q Consensus 205 lqemEk~L~sm~rEIekLraELekle~el~ 234 (503)
..+|-+++..++++|...+..|..|..+..
T Consensus 237 ~e~LLkkh~~le~~l~~~~~~I~~L~~qA~ 266 (450)
T 3r6n_A 237 LLEQIKELEKEREKILEYKRQVQNLVNKSK 266 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677778888888888888877654
No 65
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=96.73 E-value=0.5 Score=46.25 Aligned_cols=14 Identities=7% Similarity=0.067 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHhcc
Q 010712 217 TEVEKLRAELMNAP 230 (503)
Q Consensus 217 rEIekLraELekle 230 (503)
.-++.|+..|+.+.
T Consensus 245 ~~~~~l~~~~~~id 258 (301)
T 2efk_A 245 KCLEGMKVAANAVD 258 (301)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcC
Confidence 33445555555444
No 66
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=96.72 E-value=0.073 Score=44.76 Aligned_cols=32 Identities=9% Similarity=0.208 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 131 EFQKSKTEAQNLVVAREELIAKVHQLTQDLQR 162 (503)
Q Consensus 131 ELeqLraELqqL~~erqeLe~qiq~L~~ELqr 162 (503)
++..|+.+|..-+..+.+++.++..+..+|..
T Consensus 27 e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEe 58 (97)
T 2eqb_B 27 EVKRLREDIAKENELRTKAEEEADKLNKEVED 58 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444333
No 67
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=96.71 E-value=0.029 Score=59.86 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 60 VEMQKLATENQRLAATHGTLRQELA 84 (503)
Q Consensus 60 ~EIq~Le~enqrLa~e~~~LrqeLa 84 (503)
++|..+..++..++.+...--..|.
T Consensus 39 ~el~~f~keRa~iE~eYAk~L~kLa 63 (486)
T 3haj_A 39 SDLMNCLHERARIEKAYAQQLTEWA 63 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555544333443
No 68
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=96.68 E-value=0.016 Score=61.05 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccccc
Q 010712 210 KNYITMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 210 k~L~sm~rEIekLraELekle~el 233 (503)
++++.++.||.+|..+|++++.++
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~ 466 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEV 466 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555443
No 69
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=96.68 E-value=0.036 Score=46.64 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 131 EFQKSKTEAQNLVVAREELIAKVHQLTQDLQR 162 (503)
Q Consensus 131 ELeqLraELqqL~~erqeLe~qiq~L~~ELqr 162 (503)
+++.++.+|.++..++..++.++..|..+|.+
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~e 37 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAK 37 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444555555555555555555555544443
No 70
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=96.68 E-value=0.072 Score=45.71 Aligned_cols=93 Identities=15% Similarity=0.146 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 010712 128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV-QQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQ 206 (503)
Q Consensus 128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~el-qqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlq 206 (503)
|..+...+.++|...+....+++..+.+|..+|.+++.+. .+..+-...|+.+++||.....++..++..++.....-.
T Consensus 6 LLRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~ 85 (107)
T 2no2_A 6 LLRKNAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEA 85 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556667777888888888888888888888876432 234455566777888887777777776665555544444
Q ss_pred HHHHHHHHHHHHHH
Q 010712 207 VMEKNYITMATEVE 220 (503)
Q Consensus 207 emEk~L~sm~rEIe 220 (503)
.+...+..+..|.+
T Consensus 86 ~l~~~~~~l~~Ek~ 99 (107)
T 2no2_A 86 NWAAEFAELEKERD 99 (107)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444433333333
No 71
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=96.67 E-value=0.023 Score=58.24 Aligned_cols=38 Identities=13% Similarity=0.059 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010712 193 YEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 230 (503)
Q Consensus 193 ~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle 230 (503)
.++..+..+...+......++.|......|..+++.+.
T Consensus 254 ~~~~~~~~l~~~I~~Ai~al~~l~~~W~~m~~~~~~l~ 291 (346)
T 2nrj_A 254 VAYSNINEMHKALDDAINALTYMSTQWHDLDSQYSGVL 291 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555556666666666666655543
No 72
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=96.67 E-value=0.0021 Score=57.32 Aligned_cols=15 Identities=7% Similarity=0.213 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 010712 51 MEQKIASQHVEMQKL 65 (503)
Q Consensus 51 LEqeIe~~~~EIq~L 65 (503)
||++|.....+|...
T Consensus 6 LEd~L~~~r~~l~~~ 20 (135)
T 2e7s_A 6 LEEQLNKSLKTIASQ 20 (135)
T ss_dssp CCSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 73
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=96.66 E-value=0.009 Score=51.24 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712 198 YNDHLESLQVMEKNYITMATEVEKLRAELMNA 229 (503)
Q Consensus 198 ~~el~eqlqemEk~L~sm~rEIekLraELekl 229 (503)
++.+...++.+++++..+..++++++..|..+
T Consensus 79 ~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 79 IETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555555555555555555443
No 74
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=96.62 E-value=0.0094 Score=52.25 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010712 102 SERELQMRNLTEKIAKMEAEL 122 (503)
Q Consensus 102 ae~E~el~eL~eki~kLEaEL 122 (503)
.+.+..+..|..+|..|++|+
T Consensus 36 ~E~q~~v~ql~~~i~~Le~eL 56 (120)
T 3i00_A 36 TESQRVVLQLKGHVSELEADL 56 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 75
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=96.59 E-value=0.023 Score=49.13 Aligned_cols=53 Identities=15% Similarity=0.106 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHH
Q 010712 69 NQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAE 121 (503)
Q Consensus 69 nqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaE 121 (503)
-.+|..+...|+++|..+..+...|...+.....+...+|..|.+++..-+..
T Consensus 8 ~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~ 60 (112)
T 1x79_B 8 VKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEIL 60 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555554444444444555555555555554443
No 76
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=96.58 E-value=0.27 Score=52.29 Aligned_cols=12 Identities=17% Similarity=0.188 Sum_probs=5.2
Q ss_pred HHHHHHHHHhcc
Q 010712 219 VEKLRAELMNAP 230 (503)
Q Consensus 219 IekLraELekle 230 (503)
.+.|+..|+.+.
T Consensus 267 ~e~l~~~i~~id 278 (486)
T 3haj_A 267 YHDLEQSIRAAD 278 (486)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHHhCC
Confidence 344444444433
No 77
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=96.55 E-value=0.034 Score=47.97 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ 161 (503)
Q Consensus 130 ~ELeqLraELqqL~~erqeLe~qiq~L~~ELq 161 (503)
.+|.+.+.-|.+...+.......+..|+..|.
T Consensus 32 ~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~ 63 (121)
T 3mq7_A 32 QELTEAQKGFQDVEAQAATANHTVMALMASLD 63 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443344433333333334444444443
No 78
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=96.51 E-value=0.049 Score=47.06 Aligned_cols=92 Identities=15% Similarity=0.208 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 010712 128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQV 207 (503)
Q Consensus 128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqe 207 (503)
|..++.+++.+|.++...+.+|+...+....+ -..+|..|...+...++.|..++..+..++... ..++..
T Consensus 11 lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~------~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~v---q~qL~~ 81 (112)
T 1x79_B 11 LQLMLRQANDQLEKTMKDKQELEDFIKQSSED------SSHQISALVLRAQASEILLEELQQGLSQAKRDV---QEQMAV 81 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 33444444445555554444444442221111 112333344444444444444444443333222 233344
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 010712 208 MEKNYITMATEVEKLRAELMN 228 (503)
Q Consensus 208 mEk~L~sm~rEIekLraELek 228 (503)
+....+.+..+|.+|..+=+.
T Consensus 82 Lt~~Re~V~~eL~rLQ~eNd~ 102 (112)
T 1x79_B 82 LMQSREQVSEELVRLQKDNDS 102 (112)
T ss_dssp HHHHHHHHHTC----------
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 444444445555555544333
No 79
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=96.51 E-value=0.048 Score=47.07 Aligned_cols=30 Identities=20% Similarity=0.219 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 132 FQKSKTEAQNLVVAREELIAKVHQLTQDLQ 161 (503)
Q Consensus 132 LeqLraELqqL~~erqeLe~qiq~L~~ELq 161 (503)
+++|+.||+.|..++++...+++.|..+.+
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 333334444444444444444444433333
No 80
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=96.50 E-value=0.12 Score=54.58 Aligned_cols=11 Identities=18% Similarity=0.392 Sum_probs=4.6
Q ss_pred CChHHHHHHHH
Q 010712 46 PPPEVMEQKIA 56 (503)
Q Consensus 46 p~p~~LEqeIe 56 (503)
..+..|.++++
T Consensus 291 lt~~elkqrqe 301 (551)
T 2b5u_A 291 LSPDQVKQRQD 301 (551)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 34444444433
No 81
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=96.50 E-value=0.56 Score=45.79 Aligned_cols=15 Identities=0% Similarity=-0.051 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHhcc
Q 010712 216 ATEVEKLRAELMNAP 230 (503)
Q Consensus 216 ~rEIekLraELekle 230 (503)
..-++.|...++.+.
T Consensus 251 ~~~~~~l~~~~~~id 265 (305)
T 2efl_A 251 GKCLDGIVKAAESID 265 (305)
T ss_dssp HHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhcC
Confidence 334445555555443
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.48 E-value=0.17 Score=53.29 Aligned_cols=24 Identities=13% Similarity=-0.058 Sum_probs=8.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHH
Q 010712 184 YHHCRGTYEYEKKFYNDHLESLQV 207 (503)
Q Consensus 184 Lq~lR~ele~ekk~~~el~eqlqe 207 (503)
+++++++.+.+++.+.++.+++.+
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
T 3oja_A 444 ETQLAEENARLKKLNGEADLALAS 467 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhhhHh
Confidence 333333333333333333333333
No 83
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=96.48 E-value=0.55 Score=46.16 Aligned_cols=21 Identities=0% Similarity=-0.268 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHhccccc
Q 010712 213 ITMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 213 ~sm~rEIekLraELekle~el 233 (503)
.....+++.+..=|.+.+..+
T Consensus 220 ~~f~~~~~e~~~Wl~ek~~~L 240 (326)
T 3kbt_A 220 HRYFYTGAEILGLIDEKHREL 240 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 344455555555555544333
No 84
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=96.46 E-value=0.015 Score=49.12 Aligned_cols=25 Identities=4% Similarity=0.183 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 203 ESLQVMEKNYITMATEVEKLRAELM 227 (503)
Q Consensus 203 eqlqemEk~L~sm~rEIekLraELe 227 (503)
..++.+++++..+..++++++..|.
T Consensus 79 ~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 79 LREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 85
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=96.46 E-value=0.11 Score=52.06 Aligned_cols=25 Identities=8% Similarity=0.126 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 60 VEMQKLATENQRLAATHGTLRQELA 84 (503)
Q Consensus 60 ~EIq~Le~enqrLa~e~~~LrqeLa 84 (503)
++|..+..++..++.+...--..|.
T Consensus 37 ~el~~f~keRa~iE~eYak~L~kLa 61 (337)
T 2x3v_A 37 NDLMSCVQERAKIEKAYAQQLTDWA 61 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666665554434444
No 86
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=96.44 E-value=0.73 Score=44.69 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQI 92 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~ 92 (503)
+..+|++|+.+...|.+|....+++......+..........|..
T Consensus 23 l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~ 67 (265)
T 2q12_A 23 LGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKE 67 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777666666655444444333333333443
No 87
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.74 Score=44.54 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHH
Q 010712 169 QIPALLSELESLRQEYHHCRGTYE 192 (503)
Q Consensus 169 qi~~l~~EIe~L~qELq~lR~ele 192 (503)
+|..+++||..++.+....+..|.
T Consensus 132 kl~~LeqELvraEae~lvaEAqL~ 155 (234)
T 3plt_A 132 KIPVLEQELVRAEAESLVAEAQLS 155 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344444444444444444433333
No 88
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=96.41 E-value=0.17 Score=48.54 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHHHHHH
Q 010712 170 IPALLSELESLRQEYH 185 (503)
Q Consensus 170 i~~l~~EIe~L~qELq 185 (503)
+..+.++++.+..++.
T Consensus 164 v~~ll~~h~~~~~~l~ 179 (250)
T 1quu_A 164 IQSLITAHEQFKATLP 179 (250)
T ss_dssp HHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444443333
No 89
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=96.40 E-value=0.35 Score=47.63 Aligned_cols=20 Identities=10% Similarity=-0.077 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHhccccc
Q 010712 214 TMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 214 sm~rEIekLraELekle~el 233 (503)
.....++.+..=|.+.+..+
T Consensus 223 ~F~~~~~~l~~Wl~~~~~~l 242 (323)
T 3edv_A 223 RFFSMVRDLMLWMEDVIRQI 242 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 90
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=96.40 E-value=0.014 Score=51.10 Aligned_cols=13 Identities=38% Similarity=0.516 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 010712 149 LIAKVHQLTQDLQ 161 (503)
Q Consensus 149 Le~qiq~L~~ELq 161 (503)
|..+|..|+.+|.
T Consensus 45 l~~~i~~Le~eL~ 57 (120)
T 3i00_A 45 LKGHVSELEADLA 57 (120)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 91
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=96.39 E-value=0.34 Score=47.75 Aligned_cols=27 Identities=4% Similarity=-0.042 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712 207 VMEKNYITMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 207 emEk~L~sm~rEIekLraELekle~el 233 (503)
.+...+..+....+.|...+++-+..|
T Consensus 293 ~i~~~~~~l~~~W~~L~~~~~~R~~~L 319 (326)
T 3kbt_A 293 AIQNKEQEVSAAWQALLDACAGRRTQL 319 (326)
T ss_dssp HHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555554444333
No 92
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=96.34 E-value=0.079 Score=52.66 Aligned_cols=37 Identities=14% Similarity=0.107 Sum_probs=18.0
Q ss_pred hHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 48 PEVMEQKIAS---QHVEMQKLATENQRLAATHGTLRQELA 84 (503)
Q Consensus 48 p~~LEqeIe~---~~~EIq~Le~enqrLa~e~~~LrqeLa 84 (503)
...|.+++.. ..++|..+..++..++.+...--..|.
T Consensus 31 ~~~l~~r~~~g~~~~~el~~f~keRa~iE~eYak~L~kLa 70 (312)
T 3abh_A 31 YKRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWA 70 (312)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444432 234455555566666665554434443
No 93
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=96.31 E-value=0.24 Score=41.41 Aligned_cols=42 Identities=14% Similarity=0.274 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQ 91 (503)
Q Consensus 50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~ 91 (503)
++|++|+...+.|-.|..+..++..-+..+-..+..-.+.|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~ri~~aig~~d~ri~~NtqaI~ 44 (114)
T 2xzr_A 3 QIEDKIEEILSKIYHIENEIARIKKLIGAIDGRVTRNTQSIE 44 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchHHHHHHHHhhhhHHHHhhHHHHH
Confidence 455666666665555555555555555555444444333333
No 94
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=96.28 E-value=0.068 Score=45.51 Aligned_cols=40 Identities=15% Similarity=0.197 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT 165 (503)
Q Consensus 126 e~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~ 165 (503)
..++.++++++.++.+|...+.++..++..+...+..+..
T Consensus 6 ~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 6 EELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445556666666777777777777777777777766654
No 95
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Probab=96.26 E-value=0.97 Score=44.23 Aligned_cols=11 Identities=27% Similarity=0.425 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 010712 215 MATEVEKLRAE 225 (503)
Q Consensus 215 m~rEIekLraE 225 (503)
+...++.+...
T Consensus 238 i~~~~~~~~~~ 248 (309)
T 2ch7_A 238 IAAAIEEQTAA 248 (309)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 96
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=96.26 E-value=0.62 Score=45.08 Aligned_cols=50 Identities=8% Similarity=0.056 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 010712 149 LIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHL 202 (503)
Q Consensus 149 Le~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~ 202 (503)
+...++.|..+|.+++...- ....|..|++||.+++.+....++.+..++
T Consensus 109 ~R~~R~~l~~~I~kLk~k~P----~s~kl~~LeqELvraEae~lvaEAqL~n~k 158 (234)
T 3plt_A 109 SRDRKEKITDEIAHLKYKDP----QSTKIPVLEQELVRAEAESLVAEAQLSNIT 158 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHCT----TCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCC----CCchHHHHHHHHHHHHHHhhHHHHHHHHhH
Confidence 33344444445544443211 234577888888888777666665555544
No 97
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=96.23 E-value=0.13 Score=43.24 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 56 ASQHVEMQKLATENQRLAATHGTLRQELAAAQHE 89 (503)
Q Consensus 56 e~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~E 89 (503)
..+..+++.|..+..+|..++..|..+-+.+..+
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~e 40 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAEN 40 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4444444444444444444444443333333333
No 98
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=96.20 E-value=0.0016 Score=71.26 Aligned_cols=39 Identities=13% Similarity=0.058 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 010712 197 FYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRR 235 (503)
Q Consensus 197 ~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~~ 235 (503)
.+..+.++.+.-+++-..++.++...+..+++.+.+|..
T Consensus 420 ~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l~~ 458 (575)
T 2i1j_A 420 EVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLA 458 (575)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444445555555555555555555543
No 99
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=96.20 E-value=1.6 Score=45.97 Aligned_cols=37 Identities=5% Similarity=0.109 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 126 EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR 162 (503)
Q Consensus 126 e~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqr 162 (503)
+.|++.|...+.|+.++...++.+.+++..+..+++.
T Consensus 352 ~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~ 388 (602)
T 1cii_A 352 DKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKH 388 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444433
No 100
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=96.18 E-value=0.17 Score=43.66 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010712 63 QKLATENQRLAATHGTLRQELA 84 (503)
Q Consensus 63 q~Le~enqrLa~e~~~LrqeLa 84 (503)
+.|...+.+|..+++.++.++.
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~ 27 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLE 27 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 101
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=96.15 E-value=0.52 Score=53.10 Aligned_cols=13 Identities=8% Similarity=0.278 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHhc
Q 010712 217 TEVEKLRAELMNA 229 (503)
Q Consensus 217 rEIekLraELekl 229 (503)
++++.+..+|+..
T Consensus 645 ~~~~~~~~el~~~ 657 (863)
T 1sjj_A 645 NHLRQYEKSIVNY 657 (863)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 3344444444443
No 102
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=96.12 E-value=0.42 Score=43.23 Aligned_cols=9 Identities=11% Similarity=0.065 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 010712 65 LATENQRLA 73 (503)
Q Consensus 65 Le~enqrLa 73 (503)
|..++..+.
T Consensus 34 Lk~e~e~l~ 42 (155)
T 2oto_A 34 LKARLENAM 42 (155)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 103
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=96.11 E-value=0.98 Score=42.81 Aligned_cols=30 Identities=7% Similarity=0.155 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 52 EQKIASQHVEMQKLATENQRLAATHGTLRQ 81 (503)
Q Consensus 52 EqeIe~~~~EIq~Le~enqrLa~e~~~Lrq 81 (503)
+.+++.+...+..++....+|..++..+.+
T Consensus 36 D~~fe~~~~~f~~~e~~~~~l~k~~~~y~~ 65 (244)
T 1uru_A 36 DEIFDDHLNNFNRQQASANRLQKEFNNYIR 65 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555554444433
No 104
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=96.07 E-value=0.14 Score=53.74 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhH
Q 010712 169 QIPALLSELESLRQEYHHCRGTY 191 (503)
Q Consensus 169 qi~~l~~EIe~L~qELq~lR~el 191 (503)
+|..|+.-|+.++.+|++|+..|
T Consensus 133 ~IrvLq~~l~~q~skIQRLE~dI 155 (491)
T 1m1j_A 133 RIKALQNSIQEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555443
No 105
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=96.07 E-value=0.087 Score=47.94 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010712 71 RLAATHGTLRQELAAAQHELQI 92 (503)
Q Consensus 71 rLa~e~~~LrqeLa~lq~EL~~ 92 (503)
.-+..-..++++|+.+=-++..
T Consensus 36 ~sassDa~vrq~Ia~LP~eVsd 57 (152)
T 4fla_A 36 NAASGDATVRQKIASLPQEVQD 57 (152)
T ss_dssp HHHHHHHHHHHHHHTSCGGGTC
T ss_pred ccccchHHHHHHHHcCCccccC
Confidence 3344445556666655444443
No 106
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=96.06 E-value=0.037 Score=57.98 Aligned_cols=49 Identities=12% Similarity=0.202 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712 176 ELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (503)
Q Consensus 176 EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~ 231 (503)
.+.++..|+.+++..+. ....+++.|+..+.++...|+.|+..|.+++.
T Consensus 85 ~skkml~~~~~~e~~~~-------~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 85 KSKKIIEEIIRYENTIL-------AHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHTHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhc-------chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34444445544444333 33344444444455555555555555555544
No 107
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=96.03 E-value=1.2 Score=43.35 Aligned_cols=18 Identities=11% Similarity=0.113 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010712 60 VEMQKLATENQRLAATHG 77 (503)
Q Consensus 60 ~EIq~Le~enqrLa~e~~ 77 (503)
++|..+..++..|+.+..
T Consensus 24 ~el~~f~keRa~iE~eYa 41 (301)
T 2efk_A 24 DRYVKFVKERTEVEQAYA 41 (301)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444555554443
No 108
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Probab=96.03 E-value=0.31 Score=46.02 Aligned_cols=162 Identities=9% Similarity=0.007 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHH
Q 010712 68 ENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVK-LEFQKSKTEAQNLVVAR 146 (503)
Q Consensus 68 enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk-~ELeqLraELqqL~~er 146 (503)
..+.+...|..++.+|......+..+...-..+... ....+.+++..+......+..+. .....|. ++.+.....
T Consensus 54 ~v~~ll~kh~~~e~ei~~~~~~v~~~~~~~~~~~~~---~~~~i~~~~~~l~~~~~~L~~~~~~R~~~Le-~l~~F~~~~ 129 (224)
T 2iak_A 54 SVESHLENHKNVHRAIEEFESSLKEAKISEIQMTAP---LKLSYTDKLHRLESQYAKLLNTSRNQERHLD-TLHNFVTRA 129 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHGGGCCTT---HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 344555566666666666555555544332222211 11223333344433333322111 1112222 455555555
Q ss_pred HHHHHHHHHHHHHHH--HHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 010712 147 EELIAKVHQLTQDLQ--RAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLE----SLQVMEKNYITMATEVE 220 (503)
Q Consensus 147 qeLe~qiq~L~~ELq--rlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~e----qlqemEk~L~sm~rEIe 220 (503)
.++...+.+.+..+. ..-.++..+..+.+.-+.++.+|...+..++.+......+.+ ....++..+..|....+
T Consensus 130 ~~~~~Wi~eke~~~~s~d~g~~l~~v~~L~~kh~~l~~el~~~~~~v~~v~~~g~~L~~~~h~~~~~I~~~~~~l~~~W~ 209 (224)
T 2iak_A 130 TNELIWLNEKEESEVAYDWSERNSSVARKKSYHAELMRELEQKEESIKAVQEIAEQLLLENHPARLTIEAYRAAMQTQWS 209 (224)
T ss_dssp HHHHHHHHHHHHHHCCC---------------CSSHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 555566555544431 111122233333333344444444444444444333333332 12344555666666666
Q ss_pred HHHHHHHhccccc
Q 010712 221 KLRAELMNAPNVD 233 (503)
Q Consensus 221 kLraELekle~el 233 (503)
.|...++..+..|
T Consensus 210 ~L~~l~~~R~~~L 222 (224)
T 2iak_A 210 WILQLCQCVEQHI 222 (224)
T ss_dssp HHHHHHC------
T ss_pred HHHHHHHHHHHHh
Confidence 6666665544443
No 109
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=95.99 E-value=0.14 Score=46.31 Aligned_cols=57 Identities=12% Similarity=0.146 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccccc
Q 010712 177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITM-------ATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 177 Ie~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm-------~rEIekLraELekle~el 233 (503)
|..+..+|.++....+.....+.++..++..+..+|.+| ...-++...+|..|...|
T Consensus 82 l~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L~~kL 145 (147)
T 2b9c_A 82 LVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARLKKLV 145 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444555555555555555555554 333444555555554443
No 110
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=95.96 E-value=0.06 Score=43.64 Aligned_cols=56 Identities=20% Similarity=0.278 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010712 113 EKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ 168 (503)
Q Consensus 113 eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elq 168 (503)
+....|++||+..+.+..||..++..+..+..++++.+.+.++|..+|.+++.++.
T Consensus 14 eLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~e 69 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERME 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778888888888888888888888887777777777777666665554433
No 111
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=95.94 E-value=0.5 Score=40.69 Aligned_cols=14 Identities=14% Similarity=0.292 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 010712 107 QMRNLTEKIAKMEA 120 (503)
Q Consensus 107 el~eL~eki~kLEa 120 (503)
..++|..+...|..
T Consensus 4 ~~rdL~~~~~~L~~ 17 (111)
T 2v66_B 4 RNRDLQADNQRLKY 17 (111)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 44455554444444
No 112
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=95.93 E-value=1.4 Score=43.00 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010712 57 SQHVEMQKLATENQRLAA 74 (503)
Q Consensus 57 ~~~~EIq~Le~enqrLa~ 74 (503)
.+..++..+......+..
T Consensus 80 ~~~~~~e~~a~~h~~~a~ 97 (305)
T 2efl_A 80 SNLNEMNDYAGQHEVISE 97 (305)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 113
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=95.90 E-value=0.58 Score=38.51 Aligned_cols=50 Identities=18% Similarity=0.121 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 226 (503)
Q Consensus 177 Ie~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraEL 226 (503)
|.+++..|+..-.-|+.++-...++..++..+|+...-++-.+.....+-
T Consensus 48 i~el~akidd~Lk~l~~EklAkldLE~RLsKtEKDkAiLELkLaE~~Dek 97 (101)
T 1d7m_A 48 LRELEAKLDETLKNLELEKLARMELEARLAKTEKDRAILELKLAEAIDEK 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh
Confidence 33344444444444445555555666666666665555555454444443
No 114
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=95.89 E-value=0.18 Score=52.91 Aligned_cols=58 Identities=9% Similarity=0.104 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 010712 141 NLVVAREELIAKVHQLTQDLQRAHTDVQQ-IPALLSELESLRQEYHHCRGTYEYEKKFY 198 (503)
Q Consensus 141 qL~~erqeLe~qiq~L~~ELqrlk~elqq-i~~l~~EIe~L~qELq~lR~ele~ekk~~ 198 (503)
+-.+++.+.++.+.++..+|++....|++ |......|..|+.-|++++.+|+.++..+
T Consensus 97 ~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI 155 (491)
T 1m1j_A 97 PGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555555555443333321 22222444445555544444444444333
No 115
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=95.87 E-value=0.42 Score=43.13 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH 164 (503)
Q Consensus 127 ~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk 164 (503)
.|..+|..++.-.+.......++..++..+..+|.+..
T Consensus 56 ~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLerae 93 (147)
T 2b9c_A 56 IQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 93 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444555555555555554433
No 116
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=95.86 E-value=0.1 Score=43.85 Aligned_cols=15 Identities=0% Similarity=-0.208 Sum_probs=5.3
Q ss_pred hhHHHHHHHHHHHHH
Q 010712 189 GTYEYEKKFYNDHLE 203 (503)
Q Consensus 189 ~ele~ekk~~~el~e 203 (503)
.+++.+.+.+..+.+
T Consensus 79 ~~i~~le~~~~~~~~ 93 (107)
T 1fxk_A 79 LREKTIERQEERVMK 93 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 117
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=95.85 E-value=1.4 Score=42.43 Aligned_cols=13 Identities=15% Similarity=0.199 Sum_probs=5.8
Q ss_pred HHHHHHHHHHhcc
Q 010712 218 EVEKLRAELMNAP 230 (503)
Q Consensus 218 EIekLraELekle 230 (503)
-++.++..|+.+.
T Consensus 236 ~~~~~~~~~~~id 248 (276)
T 2v0o_A 236 VHEEFINNMANTT 248 (276)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCC
Confidence 3444444444443
No 118
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=95.84 E-value=0.59 Score=51.02 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=31.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010712 46 PPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG 98 (503)
Q Consensus 46 p~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~ 98 (503)
..-..++++++.+...++.++.+++.|+...+. ..-.-+++..++.++.
T Consensus 12 ~~~~eI~~~v~~l~~~~q~~e~~~k~Le~~Qe~----F~~~y~~~~~~~~~~~ 60 (585)
T 1y1u_A 12 QKHLQINQRFEELRLITQDTENELKKLQQTQEY----FIIQYQESLRIQAQFA 60 (585)
T ss_dssp CSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHTTTTTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhhHHHHhhHhHHh
Confidence 344678888998888888888888777654433 3333344444444443
No 119
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=95.84 E-value=1.8 Score=43.69 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 010712 138 EAQNLVVAREELIAKV 153 (503)
Q Consensus 138 ELqqL~~erqeLe~qi 153 (503)
|+.+|..+-.+...+|
T Consensus 189 EVRkLAe~t~~at~~I 204 (341)
T 3zx6_A 189 EVRNLAQRSAQAAREI 204 (341)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444443333333333
No 120
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=95.84 E-value=1.1 Score=44.24 Aligned_cols=7 Identities=29% Similarity=0.302 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 010712 204 SLQVMEK 210 (503)
Q Consensus 204 qlqemEk 210 (503)
.+++++.
T Consensus 239 ~~Q~lee 245 (312)
T 3abh_A 239 QCQQFEE 245 (312)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 121
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.81 E-value=0.066 Score=43.63 Aligned_cols=40 Identities=30% Similarity=0.375 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQH 88 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~ 88 (503)
..||.+|....+.|.-|..++..|+.+...|.++.+.++.
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555444444444444444444444333
No 122
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=95.80 E-value=0.069 Score=55.96 Aligned_cols=29 Identities=17% Similarity=0.115 Sum_probs=11.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 010712 120 AELKTAEPVKLEFQKSKTEAQNLVVAREE 148 (503)
Q Consensus 120 aEL~~le~Lk~ELeqLraELqqL~~erqe 148 (503)
.++..|+.+..||+.+..+++.+...+++
T Consensus 38 ~~l~~LE~~l~elsn~ts~v~~Lvk~iq~ 66 (409)
T 1m1j_C 38 GELLEIEGLLQQATNSTGSIEYLIQHIKT 66 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444433333
No 123
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=95.79 E-value=0.26 Score=49.82 Aligned_cols=37 Identities=14% Similarity=0.107 Sum_probs=18.2
Q ss_pred hHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 48 PEVMEQKIAS---QHVEMQKLATENQRLAATHGTLRQELA 84 (503)
Q Consensus 48 p~~LEqeIe~---~~~EIq~Le~enqrLa~e~~~LrqeLa 84 (503)
...|.+++.. ..++|..+..++..++.+...--..|.
T Consensus 31 ~~~L~~r~~~g~~~~~el~~f~keRa~IE~eYak~L~kLa 70 (350)
T 3aco_A 31 YKRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWA 70 (350)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444432 234455555566666665554434444
No 124
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=95.77 E-value=0.38 Score=51.31 Aligned_cols=8 Identities=25% Similarity=0.372 Sum_probs=3.0
Q ss_pred HHHHHhhh
Q 010712 89 ELQILHGQ 96 (503)
Q Consensus 89 EL~~L~~q 96 (503)
+++.++.+
T Consensus 208 ~l~~l~~q 215 (517)
T 4ad8_A 208 QIDLLAFQ 215 (517)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 125
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=95.76 E-value=1.5 Score=42.18 Aligned_cols=19 Identities=11% Similarity=0.209 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010712 60 VEMQKLATENQRLAATHGT 78 (503)
Q Consensus 60 ~EIq~Le~enqrLa~e~~~ 78 (503)
++|..+..++..++.+...
T Consensus 35 ~el~~f~~eRa~iE~eYak 53 (276)
T 2v0o_A 35 KELADFVRERATIEEAYSR 53 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555443
No 126
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.15 Score=46.08 Aligned_cols=22 Identities=18% Similarity=-0.097 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHH
Q 010712 174 LSELESLRQEYHHCRGTYEYEK 195 (503)
Q Consensus 174 ~~EIe~L~qELq~lR~ele~ek 195 (503)
+.|+..|+-++..++..+..++
T Consensus 102 ~DEl~aLqlq~n~lE~kl~kLq 123 (152)
T 3a7p_A 102 NAALISGTIENNVLQQKLSDLK 123 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333333
No 127
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=95.71 E-value=2.3 Score=43.80 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQ 81 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~Lrq 81 (503)
+..+|++|+.++..|.+|.....++......+..
T Consensus 46 l~~~E~~~~~l~~~l~kl~k~~~~~~~~~~~~~~ 79 (407)
T 4h8s_A 46 LSVFEEDAGTLTDYTNQLLQAMQRVYGAQNEMCL 79 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666655555554444433
No 128
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=95.69 E-value=2.1 Score=45.45 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 010712 77 GTLRQELAAAQHELQ 91 (503)
Q Consensus 77 ~~LrqeLa~lq~EL~ 91 (503)
+.++.+++.++.||.
T Consensus 317 ~~Aer~~e~a~ael~ 331 (551)
T 2b5u_A 317 EAAERNYERARAELN 331 (551)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 129
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.60 E-value=0.28 Score=43.83 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=14.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 183 EYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEV 219 (503)
Q Consensus 183 ELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEI 219 (503)
++..++.+++.+++.+.++++++.++++++..++.++
T Consensus 97 el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 97 ELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333344444444444433
No 130
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=95.59 E-value=0.067 Score=47.02 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHhhHH
Q 010712 178 ESLRQEYHHCRGTYE 192 (503)
Q Consensus 178 e~L~qELq~lR~ele 192 (503)
+-+...++.++..++
T Consensus 91 ~~l~~r~~~l~~~~~ 105 (133)
T 1fxk_C 91 ESIKSQKNELESTLQ 105 (133)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 131
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=95.57 E-value=1.4 Score=40.41 Aligned_cols=23 Identities=9% Similarity=0.212 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010712 204 SLQVMEKNYITMATEVEKLRAEL 226 (503)
Q Consensus 204 qlqemEk~L~sm~rEIekLraEL 226 (503)
.+..+...-..+...+.+-+..|
T Consensus 186 ~~~~l~~~w~~l~~~~~~R~~~L 208 (213)
T 1cun_A 186 KMKGLKGKVSDLEKAAAQRKAKL 208 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 132
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=95.54 E-value=2.9 Score=43.94 Aligned_cols=24 Identities=8% Similarity=-0.025 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 139 AQNLVVAREELIAKVHQLTQDLQR 162 (503)
Q Consensus 139 LqqL~~erqeLe~qiq~L~~ELqr 162 (503)
+...+++...++..|+.+...+..
T Consensus 358 lddArNEItsaeSaInslqaqvSa 381 (602)
T 1cii_A 358 LLDARNKITSAESAVNSARNNLSA 381 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 133
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=95.50 E-value=0.37 Score=43.19 Aligned_cols=37 Identities=14% Similarity=0.003 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHH
Q 010712 76 HGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLT 112 (503)
Q Consensus 76 ~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~ 112 (503)
+..|+..|+..+..+..-+..-+++..+...-+.+-+
T Consensus 22 l~qL~nrla~~~am~~sqqq~~eqlS~eFqtal~eAq 58 (158)
T 3tul_A 22 LSQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQ 58 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC--CCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445445554444444433333334444443333333
No 134
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=95.50 E-value=1.7 Score=41.57 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 52 EQKIASQHVEMQKLATENQRLAATHGTL 79 (503)
Q Consensus 52 EqeIe~~~~EIq~Le~enqrLa~e~~~L 79 (503)
+.+++.+...+..++....+|..+...+
T Consensus 51 D~~Fe~~~~~f~~~e~~~~~l~k~~k~y 78 (251)
T 2fic_A 51 DEQFEQCVQNFNKQLTEGTRLQKDLRTY 78 (251)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333
No 135
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=95.49 E-value=0.053 Score=44.04 Aligned_cols=61 Identities=18% Similarity=0.258 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHH
Q 010712 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNL 111 (503)
Q Consensus 51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL 111 (503)
|+.+-+.+..+++.++.+|+.|+.++..|+++|+..+.+-.+++.++..+...++.+|-+|
T Consensus 4 l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL 64 (79)
T 3cvf_A 4 MAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFEL 64 (79)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4555666777888888899999998888888888888777777666655444444444333
No 136
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=95.49 E-value=0.95 Score=42.21 Aligned_cols=16 Identities=13% Similarity=0.210 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 010712 173 LLSELESLRQEYHHCR 188 (503)
Q Consensus 173 l~~EIe~L~qELq~lR 188 (503)
+..+.+.++.++....
T Consensus 157 ll~~h~~f~~~l~~~~ 172 (218)
T 3fb2_A 157 LIKKHEDFDKAINVQE 172 (218)
T ss_dssp -----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhH
Confidence 3333333444443333
No 137
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=95.49 E-value=0.082 Score=47.85 Aligned_cols=28 Identities=11% Similarity=-0.053 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 010712 177 LESLRQEYHHCRGTYEYEKKFYNDHLES 204 (503)
Q Consensus 177 Ie~L~qELq~lR~ele~ekk~~~el~eq 204 (503)
++.++.|+..++.++..++.++..++++
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~kl~kLq~E 125 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQKLSDLKKE 125 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455544444444444444443333
No 138
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=95.48 E-value=0.81 Score=50.11 Aligned_cols=17 Identities=12% Similarity=0.218 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHhcccc
Q 010712 216 ATEVEKLRAELMNAPNV 232 (503)
Q Consensus 216 ~rEIekLraELekle~e 232 (503)
+.+.+.|+.|+..|+++
T Consensus 566 ~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 566 QKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44455555555555443
No 139
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=95.47 E-value=0.041 Score=54.41 Aligned_cols=29 Identities=7% Similarity=0.104 Sum_probs=12.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 45 MPPPEVMEQKIASQHVEMQKLATENQRLA 73 (503)
Q Consensus 45 ~p~p~~LEqeIe~~~~EIq~Le~enqrLa 73 (503)
-+.+..+-+.+......|..+...+.+|.
T Consensus 40 ~~~~~~F~~~~~~I~~~I~~i~~~l~~L~ 68 (279)
T 2xhe_B 40 EPFMADFFNRVKRIRDNIEDIEQAIEQVA 68 (279)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 140
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=95.47 E-value=0.75 Score=42.43 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010712 71 RLAATHGTLRQELAAAQHELQIL 93 (503)
Q Consensus 71 rLa~e~~~LrqeLa~lq~EL~~L 93 (503)
.+...|..++.+|...+..+..+
T Consensus 37 ~ll~~h~~~~~ei~~~~~~~~~~ 59 (214)
T 1s35_A 37 QLLQQHAGIKDEIDGHQDSYQRV 59 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHH
Confidence 33344444444444444333333
No 141
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=95.46 E-value=1.5 Score=47.93 Aligned_cols=20 Identities=20% Similarity=0.405 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010712 208 MEKNYITMATEVEKLRAELM 227 (503)
Q Consensus 208 mEk~L~sm~rEIekLraELe 227 (503)
.+++...|.+||+.|+.+..
T Consensus 565 ~~~~~~~~~~ei~~l~~~~~ 584 (592)
T 1f5n_A 565 FQKESRIMKNEIQDLQTKMR 584 (592)
T ss_dssp CHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 44566678888888888743
No 142
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=95.46 E-value=0.055 Score=48.51 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010712 128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ 168 (503)
Q Consensus 128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elq 168 (503)
++.+|+..+..+..+...+..+..++..|+.+++++..+.+
T Consensus 71 l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQ 111 (146)
T 2xnx_M 71 ITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQ 111 (146)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44444444444444455555555555555555555544433
No 143
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=95.46 E-value=2 Score=41.55 Aligned_cols=25 Identities=12% Similarity=0.235 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 52 EQKIASQHVEMQKLATENQRLAATH 76 (503)
Q Consensus 52 EqeIe~~~~EIq~Le~enqrLa~e~ 76 (503)
+++++......+.++....+|..++
T Consensus 37 D~~F~~~e~~F~~le~~~~kL~k~~ 61 (243)
T 4a3a_A 37 DEQFEEYVQNFKRQEAEGTRLQREL 61 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 144
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=95.38 E-value=2.2 Score=43.01 Aligned_cols=10 Identities=20% Similarity=0.222 Sum_probs=4.8
Q ss_pred HHHHHHhccc
Q 010712 222 LRAELMNAPN 231 (503)
Q Consensus 222 LraELekle~ 231 (503)
|+..|+.+..
T Consensus 277 l~~~i~~id~ 286 (350)
T 3aco_A 277 LEQSIRAADA 286 (350)
T ss_dssp HHHHHHTCCH
T ss_pred HHHHHHhCCH
Confidence 5555555443
No 145
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=95.33 E-value=0.27 Score=49.52 Aligned_cols=29 Identities=14% Similarity=0.077 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhhhhc
Q 010712 70 QRLAATHGTLRQELA-AAQHELQILHGQIG 98 (503)
Q Consensus 70 qrLa~e~~~LrqeLa-~lq~EL~~L~~qL~ 98 (503)
.+|..++..|..++. .+..-+..++.+|.
T Consensus 62 s~l~kel~~l~~~~~~el~~y~~~l~~qL~ 91 (307)
T 2l7b_A 62 SQVTQELRALMDETMKELKAYKSELEEQLT 91 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455554444433322 23333344555543
No 146
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=95.30 E-value=2.2 Score=41.03 Aligned_cols=30 Identities=17% Similarity=0.135 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGT 78 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~ 78 (503)
..+++++..++..+.+|..+.......+..
T Consensus 36 e~~e~rF~~le~~~~kL~k~~k~y~~ai~~ 65 (237)
T 4avm_A 36 EQSASNFYQQQAEGHKLYKDLKNFLSAVKV 65 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554444444433
No 147
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=95.29 E-value=0.11 Score=43.94 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR 162 (503)
Q Consensus 130 ~ELeqLraELqqL~~erqeLe~qiq~L~~ELqr 162 (503)
.++..++.+|+.|..++..|..+++.|+.+|.+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666666655544
No 148
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=95.28 E-value=2.4 Score=41.54 Aligned_cols=46 Identities=15% Similarity=0.162 Sum_probs=33.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712 186 HCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (503)
Q Consensus 186 ~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~ 231 (503)
.+|..+-++++.+--+...+...-+.-.+|..|+..|+..|..+..
T Consensus 190 ~~r~AL~EERrRycflv~~l~pv~~~e~~~~~e~~~l~~~l~~~~~ 235 (253)
T 2d1l_A 190 AVRKALIEERGRFCTFISMLRPVIEEEISMLGEITHLQTISEDLKS 235 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4555666677777777777776666666777788888888877655
No 149
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=95.27 E-value=0.2 Score=40.93 Aligned_cols=14 Identities=14% Similarity=0.439 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 010712 107 QMRNLTEKIAKMEA 120 (503)
Q Consensus 107 el~eL~eki~kLEa 120 (503)
+++.++.+|..+++
T Consensus 27 ~~~~~q~~i~~lE~ 40 (84)
T 1gk4_A 27 EAANYQDTIGRLQD 40 (84)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 150
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=95.15 E-value=2.9 Score=41.65 Aligned_cols=15 Identities=0% Similarity=0.062 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 010712 68 ENQRLAATHGTLRQE 82 (503)
Q Consensus 68 enqrLa~e~~~Lrqe 82 (503)
++..+..+...++.+
T Consensus 38 el~~f~keRa~iE~e 52 (337)
T 2x3v_A 38 DLMSCVQERAKIEKA 52 (337)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 151
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=95.05 E-value=0.14 Score=40.90 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHH
Q 010712 57 SQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNL 111 (503)
Q Consensus 57 ~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL 111 (503)
.+..+++.++.+|+.|+.++..|+++|+..+.+-..++.++..+...++.+|-+|
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL 58 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFEL 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4566788888889999988888888888888777777666655544444444333
No 152
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=95.05 E-value=0.068 Score=46.90 Aligned_cols=58 Identities=19% Similarity=0.156 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 171 PALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (503)
Q Consensus 171 ~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELek 228 (503)
..+...|++|..++..+..++..++........-...+++.+.....|+++.+++|++
T Consensus 64 eeL~~ki~eL~~kvA~le~e~~~~e~~~~~~~~~~e~le~~la~KkAEleKtqa~Ld~ 121 (125)
T 2pms_C 64 EELSDKIDELDAEIAKLEDQLKAAEENNNVEDYFKEGLEKTIAAKKAELEKTEADLKK 121 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445444444444444332211000011233344444444455555555544
No 153
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=95.02 E-value=0.056 Score=51.93 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010712 103 ERELQMRNLTEKIAKMEAELKT 124 (503)
Q Consensus 103 e~E~el~eL~eki~kLEaEL~~ 124 (503)
++-.+++++...|..+...+.+
T Consensus 44 ef~~~ve~i~~~i~~i~~~v~e 65 (279)
T 3c98_B 44 EFFEQVEEIRGFIDKIAENVEE 65 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443333
No 154
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=95.00 E-value=0.51 Score=43.62 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712 54 KIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI 97 (503)
Q Consensus 54 eIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL 97 (503)
.|+..-..++.+..+......+.+.|-++...+.++|+..+..|
T Consensus 11 ~ve~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~Ai 54 (170)
T 3l4q_C 11 SVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAI 54 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444333
No 155
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=94.98 E-value=1.7 Score=40.07 Aligned_cols=109 Identities=11% Similarity=0.079 Sum_probs=52.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hh--hhhHHHHHHHHHHHHHHHHHHhhH
Q 010712 125 AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT-----------DV--QQIPALLSELESLRQEYHHCRGTY 191 (503)
Q Consensus 125 le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~-----------el--qqi~~l~~EIe~L~qELq~lR~el 191 (503)
.+.+-.+......|++-.+..+......+...+.++.-... +- .++..+..-.+.|+.-|..++...
T Consensus 33 yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~~qer~~~~~~~~f~~e~~~~E~~~l~~N~e~LksRL~~l~~sk 112 (170)
T 3l4q_C 33 YDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGNEKEMQRILLNSERLKSRIAEIHESR 112 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTGGGSSSSSCCCSSSTTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555532111 00 012223333344444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712 192 EYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 192 e~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el 233 (503)
+.+...+........+++.++.++.-+|..|+..-+..-..|
T Consensus 113 ~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL 154 (170)
T 3l4q_C 113 TKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWL 154 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 444444444455555666677777777766666655544333
No 156
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=94.91 E-value=0.49 Score=51.43 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 50 VMEQKIASQHVEMQKLATENQRLAA 74 (503)
Q Consensus 50 ~LEqeIe~~~~EIq~Le~enqrLa~ 74 (503)
.++++++.+...++.++.+++.|+.
T Consensus 6 ~i~~~~~~l~~~~q~~e~~~k~Le~ 30 (575)
T 1bf5_A 6 ELDSKVRNVKDKVMCIEHEIKSLED 30 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666655554
No 157
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=94.89 E-value=1.2 Score=44.07 Aligned_cols=32 Identities=13% Similarity=0.056 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010712 199 NDHLESLQVMEKNYITMATEVEKLRAELMNAP 230 (503)
Q Consensus 199 ~el~eqlqemEk~L~sm~rEIekLraELekle 230 (503)
..+.++.+.+++.|......|+.|......+-
T Consensus 153 ~~LLkkh~~le~~l~~~~~~i~~L~~~a~~l~ 184 (283)
T 3pe0_A 153 EDLLQDAQDEKEQLNEYKGHLSGLAKRAKAVV 184 (283)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445556666777777777777777766653
No 158
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=94.88 E-value=0.7 Score=47.75 Aligned_cols=44 Identities=16% Similarity=0.238 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010712 52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHG 95 (503)
Q Consensus 52 EqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~ 95 (503)
-.++...+.+.+....+..+|.++...+.++|+..++-++...+
T Consensus 125 ~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~e~~~k~~a~~af~~ 168 (373)
T 3hhm_B 125 GKKLHEYNTQFQEKSREYDRLYEEYTRTSQEIQMKRTAIEAFNE 168 (373)
T ss_dssp GC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 33444445555555555555666555555555554444444333
No 159
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=94.88 E-value=1.4 Score=38.73 Aligned_cols=43 Identities=14% Similarity=0.127 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 171 PALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYI 213 (503)
Q Consensus 171 ~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~ 213 (503)
..|...|...+.++..++..++..+....+...+++.+++-++
T Consensus 77 ~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~L~e 119 (150)
T 3ajw_A 77 QTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQD 119 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556666666666655555555555555554443
No 160
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=94.87 E-value=0.27 Score=51.37 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712 198 YNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 198 ~~el~eqlqemEk~L~sm~rEIekLraELekle~el 233 (503)
+.....++.+|+..+.+....|.+|+..|..++...
T Consensus 100 ~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~ 135 (411)
T 3ghg_C 100 ILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 135 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444455555555566666666666555443
No 161
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=94.87 E-value=0.31 Score=48.00 Aligned_cols=20 Identities=10% Similarity=0.207 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010712 53 QKIASQHVEMQKLATENQRL 72 (503)
Q Consensus 53 qeIe~~~~EIq~Le~enqrL 72 (503)
++++.....|..+.....+|
T Consensus 35 ~~v~~I~~~I~~I~~~v~~l 54 (267)
T 1dn1_B 35 EQVEEIRGFIDKIAENVEEV 54 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333333
No 162
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=94.85 E-value=0.068 Score=46.86 Aligned_cols=90 Identities=11% Similarity=0.191 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 010712 130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI-PALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVM 208 (503)
Q Consensus 130 ~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi-~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqem 208 (503)
.||++.+..|......++.|+.+...+..++..+..++..+ ..+..+++.|+-+.+.++.+|+-++....+.+..+..+
T Consensus 9 ~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~~~eEKrkLAqL 88 (130)
T 3cl3_D 9 GELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQL 88 (130)
T ss_dssp ------------------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443333333221 11233344444444444444444444444434333333
Q ss_pred HHHHHHHHHHH
Q 010712 209 EKNYITMATEV 219 (503)
Q Consensus 209 Ek~L~sm~rEI 219 (503)
......+..|.
T Consensus 89 Q~AY~~LfqeY 99 (130)
T 3cl3_D 89 QVAYHQLFQEY 99 (130)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 163
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=94.83 E-value=0.48 Score=39.08 Aligned_cols=37 Identities=14% Similarity=0.074 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH 164 (503)
Q Consensus 128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk 164 (503)
+..++..++..+.+....+.+|+.+...|..+...|.
T Consensus 19 ~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~ 55 (89)
T 3bas_A 19 QLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLF 55 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555555544444433
No 164
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=94.82 E-value=2.7 Score=44.03 Aligned_cols=58 Identities=7% Similarity=0.041 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHH
Q 010712 65 LATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK 123 (503)
Q Consensus 65 Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~ 123 (503)
+..++..|+.+++.+-+.|..-=.....+.... ....+.+.-++.|+....+|..-+.
T Consensus 195 ll~el~~le~elA~~L~SLT~HyDqC~~l~~~~-~s~~e~~elleVv~~Da~EL~~V~~ 252 (413)
T 4hpq_C 195 FTNEADQLEQELADFLKSFTDHFDKCSALSSRS-VSPEDAQNLFEIVERDDKDLAAINS 252 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS-CCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CChHhHHHHHHHHHcchhhHHHHHH
Confidence 344444455444444333333322333332211 1222344444444444444444333
No 165
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=94.82 E-value=0.16 Score=55.44 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAA 74 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~ 74 (503)
..+|++++.+..+++.++.+++.|+.
T Consensus 16 ~ei~~~v~~lr~~~q~~e~~ik~Le~ 41 (596)
T 1bg1_A 16 QMLEQHLQDVRKRVQDLEQKMKVVEN 41 (596)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666655555543
No 166
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=94.79 E-value=4.4 Score=41.89 Aligned_cols=63 Identities=11% Similarity=-0.021 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 010712 173 LLSELESLRQEYHHCRGTYEYEKKFYNDHL---------------ESLQVMEKNYITMATEVEKLRAELMNAPNVDRR 235 (503)
Q Consensus 173 l~~EIe~L~qELq~lR~ele~ekk~~~el~---------------eqlqemEk~L~sm~rEIekLraELekle~el~~ 235 (503)
++.+|.++++++...+.+++.+++.+.... ..++++...++.+.-.-.+|.++.+.++..+..
T Consensus 314 ~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~q~~~~~~~~~~ 391 (406)
T 4dyl_A 314 VTDELAVATEMVFRRQEMVTQLQQELRNEEENTHPRERVQLLGKRQVLQEALQGLQVALCSQAKLQAQQELLQTKLEH 391 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555555555443321 123344444445555556666666666665643
No 167
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=94.79 E-value=0.43 Score=44.98 Aligned_cols=6 Identities=17% Similarity=0.241 Sum_probs=2.3
Q ss_pred HHHHHH
Q 010712 62 MQKLAT 67 (503)
Q Consensus 62 Iq~Le~ 67 (503)
++.|..
T Consensus 43 L~~LL~ 48 (192)
T 2p22_C 43 IIDLIQ 48 (192)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 333333
No 168
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=94.75 E-value=0.94 Score=39.36 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010712 49 EVMEQKIASQHVEMQKLA 66 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le 66 (503)
+.++.++..++.+.+.|.
T Consensus 5 ~~V~s~l~~LEaeyq~L~ 22 (119)
T 2avr_X 5 ASLVGELQALDAEYQNLA 22 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555444
No 169
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=94.75 E-value=3.2 Score=40.06 Aligned_cols=57 Identities=9% Similarity=-0.026 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 169 QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (503)
Q Consensus 169 qi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELek 228 (503)
+..++...|..+...++.+....+.++... --+..++.+....+......|+.++..
T Consensus 166 ~~e~ie~dL~~~e~~i~~l~~~a~~L~~~~---y~~a~~i~~r~~~l~~~w~~L~~~~~~ 222 (235)
T 2odv_A 166 RAGEVERDLDKADSMIRLLFNDVQTLKDGR---HPQGEQMYRRVYRLHKRLVAIRTEYNL 222 (235)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---CTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555444444444333332111 112344444555556666666665544
No 170
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=94.73 E-value=4.6 Score=41.79 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010712 75 THGTLRQELAAAQHELQIL 93 (503)
Q Consensus 75 e~~~LrqeLa~lq~EL~~L 93 (503)
.|..++.+|......+..+
T Consensus 173 kh~~~~~~l~~~~~~v~~l 191 (476)
T 1hci_A 173 KHEAFESDLAAHQDRVEQI 191 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHH
Confidence 3344444444444433333
No 171
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=94.73 E-value=0.22 Score=41.62 Aligned_cols=34 Identities=15% Similarity=0.289 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRA 163 (503)
Q Consensus 130 ~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrl 163 (503)
.+|..++.+|..+..++..|+.+++.|..++.++
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~ 89 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRL 89 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433
No 172
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=94.72 E-value=3.2 Score=41.40 Aligned_cols=15 Identities=33% Similarity=0.297 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHh
Q 010712 175 SELESLRQEYHHCRG 189 (503)
Q Consensus 175 ~EIe~L~qELq~lR~ 189 (503)
+.|+.|+.|++.+..
T Consensus 224 ~rle~L~~ere~~~e 238 (302)
T 3ibp_A 224 SRIESLHAEREVLSE 238 (302)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 346666666555543
No 173
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=94.66 E-value=0.68 Score=37.73 Aligned_cols=50 Identities=16% Similarity=0.235 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (503)
Q Consensus 172 ~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELek 228 (503)
.+...|..+..++.++|.+++ ....+.+++-+-...+..||..-+.-|+-
T Consensus 30 ~~q~~i~~lE~eL~~~r~e~~-------~q~~EYq~LlnvK~~Ld~EIatYRkLLEG 79 (84)
T 1gk4_A 30 NYQDTIGRLQDEIQNMKEEMA-------RHLREYQDLLNVKMALDIEIATYRKLLEG 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence 344445555555555555543 33444455555666777888887777764
No 174
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=94.63 E-value=1.6 Score=40.98 Aligned_cols=8 Identities=25% Similarity=0.276 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 010712 180 LRQEYHHC 187 (503)
Q Consensus 180 L~qELq~l 187 (503)
...|.+.+
T Consensus 140 ~eeeS~~l 147 (192)
T 2p22_C 140 LDEESSQL 147 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 175
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=94.53 E-value=0.5 Score=49.42 Aligned_cols=50 Identities=10% Similarity=0.088 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 178 ESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 227 (503)
Q Consensus 178 e~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELe 227 (503)
.++..|+.+++..+......+..|+..+......|..|+..|..|.....
T Consensus 87 kkml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~~ 136 (411)
T 3ghg_C 87 RKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQ 136 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445555555555555555555555555566666666666666665543
No 176
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=94.50 E-value=3.5 Score=39.40 Aligned_cols=7 Identities=29% Similarity=0.354 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 010712 139 AQNLVVA 145 (503)
Q Consensus 139 LqqL~~e 145 (503)
+.+|-.+
T Consensus 110 VRkLA~~ 116 (227)
T 1qu7_A 110 VRNLAQR 116 (227)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 177
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=94.49 E-value=0.23 Score=40.25 Aligned_cols=10 Identities=10% Similarity=0.136 Sum_probs=3.7
Q ss_pred HHHHHHHHHh
Q 010712 219 VEKLRAELMN 228 (503)
Q Consensus 219 IekLraELek 228 (503)
+......|+.
T Consensus 64 l~~a~~kLee 73 (81)
T 1ic2_A 64 LKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 178
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=94.42 E-value=3.5 Score=39.13 Aligned_cols=15 Identities=0% Similarity=0.193 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 010712 106 LQMRNLTEKIAKMEA 120 (503)
Q Consensus 106 ~el~eL~eki~kLEa 120 (503)
.++.+|..+...|..
T Consensus 94 ~r~~~l~~~W~~L~~ 108 (250)
T 1quu_A 94 DRCQKICDQWDRLGT 108 (250)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 179
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=94.39 E-value=3.5 Score=38.92 Aligned_cols=33 Identities=9% Similarity=0.025 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLR 80 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~Lr 80 (503)
-..+++++..+...+.+|..+...+...+..+.
T Consensus 39 fe~~~~~f~~~e~~~~~l~k~~~~y~~~~~~~~ 71 (244)
T 1uru_A 39 FDDHLNNFNRQQASANRLQKEFNNYIRCVRAAQ 71 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366788888888888888888877776665553
No 180
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=94.39 E-value=0.57 Score=49.76 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010712 54 KIASQHVEMQKLATENQRLAA 74 (503)
Q Consensus 54 eIe~~~~EIq~Le~enqrLa~ 74 (503)
+|...+.|+.++...|+.+.+
T Consensus 10 ~la~yq~elarvqkana~aka 30 (497)
T 3iox_A 10 KLTAYQTELARVQKANADAKA 30 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433333
No 181
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=94.32 E-value=0.85 Score=47.12 Aligned_cols=32 Identities=9% Similarity=0.161 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712 198 YNDHLESLQVMEKNYITMATEVEKLRAELMNA 229 (503)
Q Consensus 198 ~~el~eqlqemEk~L~sm~rEIekLraELekl 229 (503)
+....+...+++++|.++.-++..|+..-++.
T Consensus 228 ~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~~ 259 (373)
T 3hhm_B 228 LKKQAAEYREIDKRMNSIKPDLIQLRKTRDQY 259 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence 33334444556666666666666666554443
No 182
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=94.31 E-value=6 Score=41.35 Aligned_cols=10 Identities=30% Similarity=0.421 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 010712 74 ATHGTLRQEL 83 (503)
Q Consensus 74 ~e~~~LrqeL 83 (503)
.++..|+..+
T Consensus 168 ~~L~~L~~~~ 177 (413)
T 4hpq_C 168 SRMKGLRDEF 177 (413)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 3445555544
No 183
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=94.31 E-value=0.38 Score=46.68 Aligned_cols=6 Identities=0% Similarity=-0.385 Sum_probs=2.1
Q ss_pred HHHHHH
Q 010712 54 KIASQH 59 (503)
Q Consensus 54 eIe~~~ 59 (503)
.+....
T Consensus 14 ~~~~Y~ 19 (243)
T 2a01_A 14 LATVYV 19 (243)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 184
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=94.30 E-value=2.7 Score=45.72 Aligned_cols=23 Identities=9% Similarity=0.097 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHH
Q 010712 171 PALLSELESLRQEYHHCRGTYEY 193 (503)
Q Consensus 171 ~~l~~EIe~L~qELq~lR~ele~ 193 (503)
+.++.-.+.|-.-+-++|+.|+.
T Consensus 122 d~lQ~w~e~lae~l~q~rqql~~ 144 (575)
T 1bf5_A 122 DQLQNWFTIVAESLQQVRQQLKK 144 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555544443
No 185
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=94.28 E-value=0.3 Score=39.09 Aligned_cols=14 Identities=14% Similarity=-0.009 Sum_probs=3.1
Q ss_pred HHHHHHHHHHHHHH
Q 010712 198 YNDHLESLQVMEKN 211 (503)
Q Consensus 198 ~~el~eqlqemEk~ 211 (503)
...+..+++++|++
T Consensus 60 ~~r~~~ri~elEeE 73 (77)
T 2w83_C 60 KLKLEEKNRELEEE 73 (77)
T ss_dssp HHHHHHHC------
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444444443
No 186
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=94.23 E-value=0.32 Score=39.32 Aligned_cols=59 Identities=15% Similarity=0.116 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712 175 SELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 175 ~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el 233 (503)
..+...+.||+.+++.-+.+++-...+..-+..|+.+...+.++|+.|+...+.|...+
T Consensus 18 E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l 76 (78)
T 3iv1_A 18 EEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSAL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555556666666655556655666666666666677777777777777766665543
No 187
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=94.21 E-value=1.2 Score=38.89 Aligned_cols=39 Identities=23% Similarity=0.157 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712 191 YEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229 (503)
Q Consensus 191 le~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekl 229 (503)
++.++++++.+.+.+..+++.+..+...+..+..+|.++
T Consensus 90 ~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 90 MESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555555555555555544443
No 188
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=94.17 E-value=8.1 Score=42.92 Aligned_cols=15 Identities=13% Similarity=0.408 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 010712 107 QMRNLTEKIAKMEAE 121 (503)
Q Consensus 107 el~eL~eki~kLEaE 121 (503)
+|+.+.+++..|+.+
T Consensus 557 ~L~~~l~~l~~l~~~ 571 (704)
T 2xs1_A 557 VLKSLLSNLDEVKKE 571 (704)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 189
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=94.15 E-value=0.2 Score=42.43 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Q 010712 208 MEKNYITMATEVEKLRAELMNAP 230 (503)
Q Consensus 208 mEk~L~sm~rEIekLraELekle 230 (503)
.++.+..|..|+++|+..|.+++
T Consensus 73 ~~~~~e~Lq~E~erLr~~v~~lE 95 (100)
T 1go4_E 73 LREDHSQLQAECERLRGLLRAME 95 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556666666666666554
No 190
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=94.09 E-value=0.79 Score=37.77 Aligned_cols=45 Identities=13% Similarity=0.150 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQIL 93 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L 93 (503)
...+.++.....++..|...+.+.......|......+.++...|
T Consensus 10 ~~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L 54 (89)
T 3bas_A 10 ARQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDL 54 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555665555555555555555544444444444444444443
No 191
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=94.04 E-value=1.1 Score=39.04 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 010712 173 LLSELESLRQEYH 185 (503)
Q Consensus 173 l~~EIe~L~qELq 185 (503)
+..+|++...+|.
T Consensus 49 m~~~i~ek~~~i~ 61 (119)
T 2avr_X 49 VYNELSQRAQRLQ 61 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333444333333
No 192
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=94.02 E-value=1.4 Score=40.43 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010712 141 NLVVAREELIAKVHQLTQDLQR 162 (503)
Q Consensus 141 qL~~erqeLe~qiq~L~~ELqr 162 (503)
.+...+.++..+++.+..+|..
T Consensus 91 ~~~e~l~~a~~~l~d~~~~L~~ 112 (175)
T 4abx_A 91 QLQNELRAALESVQAIAGELRD 112 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444433
No 193
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=94.01 E-value=2.9 Score=36.59 Aligned_cols=49 Identities=8% Similarity=-0.003 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010712 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIG 98 (503)
Q Consensus 50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~ 98 (503)
.|+.-|+....+......++.+....+.....+|..+..........+.
T Consensus 9 ~L~~ll~l~~~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~~ 57 (150)
T 3ajw_A 9 ALETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLN 57 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666666666666666655555443
No 194
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=93.95 E-value=0.17 Score=37.77 Aligned_cols=43 Identities=28% Similarity=0.353 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILH 94 (503)
Q Consensus 52 EqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~ 94 (503)
++++..+..++..|..+|.+|.+.+...+++|..++.+|+.|.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7888888999999999999999999999999999999888763
No 195
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=93.94 E-value=0.43 Score=50.41 Aligned_cols=29 Identities=14% Similarity=0.281 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010712 202 LESLQVMEKNYITMATEVEKLRAELMNAP 230 (503)
Q Consensus 202 ~eqlqemEk~L~sm~rEIekLraELekle 230 (503)
...|+.|...++.+.++|++|+..|..++
T Consensus 162 ~~~i~~l~~~~~~~~~~i~~l~~~~~~~~ 190 (461)
T 3ghg_B 162 PTNLRVLRSILENLRSKIQKLESDVSAQM 190 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455555555555666666666655443
No 196
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=93.92 E-value=0.21 Score=39.69 Aligned_cols=34 Identities=15% Similarity=0.055 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712 200 DHLESLQVMEKNYITMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 200 el~eqlqemEk~L~sm~rEIekLraELekle~el 233 (503)
...+.++++++.|.....+|.+|+.+|+|++..+
T Consensus 37 ~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSVl 70 (72)
T 3nmd_A 37 QRDALIDELELELDQKDELIQMLQNELDKYRSVI 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3344566777777778888888888888887644
No 197
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=93.92 E-value=0.38 Score=39.45 Aligned_cols=49 Identities=16% Similarity=0.176 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (503)
Q Consensus 173 l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELek 228 (503)
+...|..+..++.++|.++ .....+.+++-+-...+..||..-+.-|+-
T Consensus 33 ~q~~i~~lE~el~~~r~e~-------~~ql~EYq~LlnvK~~Le~EIatYRkLLEG 81 (86)
T 1x8y_A 33 SRRLLAEKEREMAEMRARM-------QQQLDEYQELLDIKLALDMEIHAYRKLLEG 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence 3334444445555544443 333444455555666777777777777664
No 198
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens}
Probab=93.90 E-value=1.4 Score=40.22 Aligned_cols=20 Identities=10% Similarity=0.210 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010712 74 ATHGTLRQELAAAQHELQIL 93 (503)
Q Consensus 74 ~e~~~LrqeLa~lq~EL~~L 93 (503)
..|..++.+|...+..+..+
T Consensus 44 ~~H~~~~~ei~~~~~~~~~l 63 (185)
T 3lbx_B 44 KYHQGINAEIETRSKNFSAC 63 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHH
Confidence 34444444444444333333
No 199
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=93.87 E-value=2.5 Score=39.22 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 010712 170 IPALLSELESLRQEYHHCRG 189 (503)
Q Consensus 170 i~~l~~EIe~L~qELq~lR~ 189 (503)
...+..+|..++..++.+..
T Consensus 149 h~~~e~dL~~~~~~v~~l~~ 168 (218)
T 3edu_A 149 HTAFERELHLLGVQVQQFQD 168 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 200
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=93.78 E-value=3.5 Score=43.73 Aligned_cols=13 Identities=15% Similarity=0.166 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 010712 49 EVMEQKIASQHVE 61 (503)
Q Consensus 49 ~~LEqeIe~~~~E 61 (503)
..+..+|..+++|
T Consensus 93 ~~~~~Kl~eLE~e 105 (526)
T 3iyk_A 93 RGIQAKLKELEDE 105 (526)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 201
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=93.75 E-value=0.63 Score=49.97 Aligned_cols=7 Identities=14% Similarity=0.458 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 010712 220 EKLRAEL 226 (503)
Q Consensus 220 ekLraEL 226 (503)
.+++++|
T Consensus 140 ~~~~~~l 146 (501)
T 1wle_A 140 AQLEEQF 146 (501)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 202
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=93.74 E-value=1 Score=47.62 Aligned_cols=18 Identities=6% Similarity=0.119 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010712 207 VMEKNYITMATEVEKLRA 224 (503)
Q Consensus 207 emEk~L~sm~rEIekLra 224 (503)
.+..+++.|+..|..++.
T Consensus 174 ~~~~~i~~l~~~~~~~~~ 191 (461)
T 3ghg_B 174 NLRSKIQKLESDVSAQME 191 (461)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 333334444444444433
No 203
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis}
Probab=93.66 E-value=3.6 Score=36.48 Aligned_cols=32 Identities=19% Similarity=0.141 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 133 QKSKTEAQNLVVAREELIAKVHQLTQDLQRAH 164 (503)
Q Consensus 133 eqLraELqqL~~erqeLe~qiq~L~~ELqrlk 164 (503)
+.++.++..|..+...+...|..|..++...+
T Consensus 57 ~~L~~dI~dLd~~v~l~~RdIgsL~ddVa~Nq 88 (157)
T 2qih_A 57 QLHDKKITNLGILHSMVARAVGNNTQGVATNK 88 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhhcchhhHHHhhH
Confidence 33334444444433344444444444443333
No 204
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=93.66 E-value=0.6 Score=40.93 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 010712 174 LSELESLRQEYHH 186 (503)
Q Consensus 174 ~~EIe~L~qELq~ 186 (503)
+.|++..+.+++.
T Consensus 109 kAEleKtqa~Ld~ 121 (125)
T 2pms_C 109 KAELEKTEADLKK 121 (125)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 205
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=93.64 E-value=4.3 Score=37.78 Aligned_cols=22 Identities=9% Similarity=0.196 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010712 62 MQKLATENQRLAATHGTLRQEL 83 (503)
Q Consensus 62 Iq~Le~enqrLa~e~~~LrqeL 83 (503)
++.|..+.+.|..++......+
T Consensus 40 ve~llkkH~~le~ei~~~~~~v 61 (210)
T 3pdy_A 40 VEAQLGSHRGLHQSIEEFRAKI 61 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433333
No 206
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=93.56 E-value=1.3 Score=43.16 Aligned_cols=10 Identities=30% Similarity=0.418 Sum_probs=4.1
Q ss_pred HHHHHHHHhc
Q 010712 220 EKLRAELMNA 229 (503)
Q Consensus 220 ekLraELekl 229 (503)
+.++..|+++
T Consensus 253 ~~~~~~i~~i 262 (290)
T 3i2w_A 253 EEFSHTINNA 262 (290)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhc
Confidence 3344444443
No 207
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=93.48 E-value=4 Score=38.70 Aligned_cols=13 Identities=8% Similarity=0.281 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 010712 127 PVKLEFQKSKTEA 139 (503)
Q Consensus 127 ~Lk~ELeqLraEL 139 (503)
.|.+++++++..|
T Consensus 84 ~l~kd~ee~r~~l 96 (216)
T 2lem_A 84 EMNKDLEEVKQKV 96 (216)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHhccHHHHHHhh
Confidence 3444555555543
No 208
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=93.40 E-value=7.6 Score=39.46 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQI 92 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~ 92 (503)
+..+|++++.++..|.+|....+++.....++..-.....+.|..
T Consensus 23 l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~ 67 (385)
T 2q13_A 23 LGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKE 67 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777777766666655555444443333333333333
No 209
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=93.39 E-value=4 Score=40.97 Aligned_cols=17 Identities=6% Similarity=0.124 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhcccc
Q 010712 216 ATEVEKLRAELMNAPNV 232 (503)
Q Consensus 216 ~rEIekLraELekle~e 232 (503)
...++.|+..|+-+-..
T Consensus 263 ~~~~eeLr~~l~P~~e~ 279 (307)
T 2l7b_A 263 EAAQARLKSRFEPLAED 279 (307)
T ss_dssp HHHHHHHHHHHTTCSCH
T ss_pred HhHHHHHHHHhhhHHHH
Confidence 34445555555444333
No 210
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=93.29 E-value=1.3 Score=46.99 Aligned_cols=44 Identities=23% Similarity=0.154 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 81 QELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKT 124 (503)
Q Consensus 81 qeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~ 124 (503)
.+|+..+.||.++++.=+.++++.|..+.+++++-..+++|.+.
T Consensus 9 ~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNea 52 (497)
T 3iox_A 9 AKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTA 52 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34555555555555554445555555555555555555554443
No 211
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=93.24 E-value=0.47 Score=50.74 Aligned_cols=7 Identities=14% Similarity=0.202 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 010712 220 EKLRAEL 226 (503)
Q Consensus 220 ekLraEL 226 (503)
.+++.+|
T Consensus 95 ~~~~~~~ 101 (485)
T 3qne_A 95 AEADKNL 101 (485)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 212
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=93.24 E-value=1.6 Score=39.05 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRA 163 (503)
Q Consensus 130 ~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrl 163 (503)
.+...-=.|...|.+++..+..++.+|..+|.++
T Consensus 52 ~~F~~dy~EYk~Lhaev~~v~~~F~~Ld~~L~~l 85 (140)
T 1xaw_A 52 RNFDTGLQEYKSLQSVLDEINKELSRLDKELDDY 85 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3333333444444444455555555555555443
No 213
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=93.12 E-value=3.2 Score=37.22 Aligned_cols=52 Identities=12% Similarity=0.123 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-------HHHHHHHHHHHHHHHHHh
Q 010712 138 EAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIP-------ALLSELESLRQEYHHCRG 189 (503)
Q Consensus 138 ELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~-------~l~~EIe~L~qELq~lR~ 189 (503)
.+++...........++.|+.+|++++.++.++. .++.+++.++.|+..+++
T Consensus 63 ~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~ 121 (158)
T 3tul_A 63 LYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKE 121 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444455555555555555555542 334444444444444333
No 214
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}
Probab=93.04 E-value=2.3 Score=47.23 Aligned_cols=23 Identities=9% Similarity=0.097 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHH
Q 010712 171 PALLSELESLRQEYHHCRGTYEY 193 (503)
Q Consensus 171 ~~l~~EIe~L~qELq~lR~ele~ 193 (503)
+.+..-.+.|-.-+-++|+.|+.
T Consensus 257 d~lQ~w~e~lae~l~q~rqql~~ 279 (683)
T 1yvl_A 257 DQLQNWFTIVAESLQQVRQQLKK 279 (683)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555544443
No 215
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=93.02 E-value=0.26 Score=46.10 Aligned_cols=49 Identities=24% Similarity=0.327 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI 97 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL 97 (503)
..++++++..+..|+.|..+|..|..+++...+++..++.+|+.++.++
T Consensus 9 ~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 9 NSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5678888888888888888888888777777777777776666665555
No 216
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=93.00 E-value=7.8 Score=38.41 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHhhhh
Q 010712 81 QELAAAQHELQILHGQI 97 (503)
Q Consensus 81 qeLa~lq~EL~~L~~qL 97 (503)
+.|..+..++++.++++
T Consensus 101 ~~L~~~~~e~ek~RK~~ 117 (279)
T 3qwe_A 101 QPLAAKRTEIEKWRKEF 117 (279)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555554444
No 217
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=93.00 E-value=1 Score=37.49 Aligned_cols=8 Identities=0% Similarity=-0.005 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 010712 109 RNLTEKIA 116 (503)
Q Consensus 109 ~eL~eki~ 116 (503)
.+|..=|.
T Consensus 12 ~el~~WL~ 19 (118)
T 3uul_A 12 EEVLTWLL 19 (118)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 218
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=92.99 E-value=7.7 Score=39.50 Aligned_cols=27 Identities=15% Similarity=0.036 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 48 PEVMEQKIASQHVEMQKLATENQRLAA 74 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le~enqrLa~ 74 (503)
+..++++++....-|..|.....+|..
T Consensus 163 ~~~~~~~~~~~~~~~~~l~~~~~~l~~ 189 (366)
T 3dyt_A 163 LVEIEQKCEAVGKFTKAMDDGVKELLT 189 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777666555555555544443
No 219
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=92.97 E-value=0.041 Score=45.92 Aligned_cols=61 Identities=21% Similarity=0.236 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 102 SERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQR 162 (503)
Q Consensus 102 ae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqr 162 (503)
+.++..+.+|++.+..++.++..+.-|+++++-.+.+...-++.|..+..+++.|..+|..
T Consensus 34 ~~KQ~~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~aERaaREk~~~EKe~L~~ql~~ 94 (96)
T 3fx0_A 34 VAKQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQAREKLAEKKELLQEQLEQ 94 (96)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTSCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3456678888888999998888888899999888888888888887777777666666544
No 220
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=92.96 E-value=7.1 Score=37.89 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 60 VEMQKLATENQRLAATHGTLRQELA 84 (503)
Q Consensus 60 ~EIq~Le~enqrLa~e~~~LrqeLa 84 (503)
++|..+..++..++.+...--..|.
T Consensus 25 ~el~~f~keRa~iE~~Yak~L~kL~ 49 (290)
T 3i2w_A 25 NDLQQLIQERADIEKGYAKSLRTWS 49 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666665544333443
No 221
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=92.94 E-value=14 Score=41.08 Aligned_cols=23 Identities=17% Similarity=0.275 Sum_probs=12.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q 010712 6 RIPPPHLRRPPPGPGMMHPDPFV 28 (503)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~ 28 (503)
+||+...=-++++-.|+-+.||-
T Consensus 328 ~VP~~~~L~~i~~~~lvk~~~~~ 350 (704)
T 2xs1_A 328 RVPDLKDLDPIGKATLVKSTPVN 350 (704)
T ss_dssp CCCCGGGSCCCCCCCCCCCCCCC
T ss_pred CCCCccccCCccCccccccCCCC
Confidence 45654222334455577776653
No 222
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=92.88 E-value=3.1 Score=45.39 Aligned_cols=32 Identities=13% Similarity=0.107 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQE 82 (503)
Q Consensus 51 LEqeIe~~~~EIq~Le~enqrLa~e~~~Lrqe 82 (503)
++++...+...++.|....+.++.++..|++.
T Consensus 11 ~~~k~~ei~~~v~~lr~~~q~~e~~ik~Le~~ 42 (596)
T 1bg1_A 11 VTEKQQMLEQHLQDVRKRVQDLEQKMKVVENL 42 (596)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666667776667777666666433
No 223
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=92.75 E-value=2.6 Score=46.91 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010712 58 QHVEMQKLATENQRLAATHGTLR 80 (503)
Q Consensus 58 ~~~EIq~Le~enqrLa~e~~~Lr 80 (503)
....|+.++.++..|+.+++.++
T Consensus 15 i~~~i~~~~~~r~~l~~~~~~~~ 37 (706)
T 3fhn_A 15 INDRIKQVQNERNELASKLQNLK 37 (706)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555554
No 224
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=92.69 E-value=1.8 Score=35.79 Aligned_cols=16 Identities=6% Similarity=0.266 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 010712 128 VKLEFQKSKTEAQNLV 143 (503)
Q Consensus 128 Lk~ELeqLraELqqL~ 143 (503)
+..+|...+..+..+.
T Consensus 48 l~~ei~~~~~~v~~~~ 63 (119)
T 3uun_A 48 YMMDLTAHQGRVGNIL 63 (119)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHH
Confidence 3334433333333333
No 225
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=92.68 E-value=0.27 Score=49.54 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 010712 208 MEKNYITMATEVEKLRAELMN 228 (503)
Q Consensus 208 mEk~L~sm~rEIekLraELek 228 (503)
++.++..++.+++.++..|+.
T Consensus 134 ~~~~l~~~~~~l~~a~~~l~~ 154 (369)
T 4dk0_A 134 VQENIKQAEIEVNTAETNLGY 154 (369)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 333344444444444444443
No 226
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=92.63 E-value=0.42 Score=40.05 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712 174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229 (503)
Q Consensus 174 ~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekl 229 (503)
...|..|..++..++.+++ ....+.+++-.-...+..||..-+.-|+--
T Consensus 43 q~~i~~lE~eL~~~r~e~~-------~ql~EYq~LlnvKl~Le~EIatYrkLLEGE 91 (95)
T 3mov_A 43 RRMLTDKEREMAEIRDQMQ-------QQLNDYEQLLDVKLALDMEISAYRKLLEGE 91 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3344444445544444433 333444455555556777777777766543
No 227
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=92.60 E-value=6.1 Score=36.20 Aligned_cols=9 Identities=0% Similarity=0.283 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 010712 212 YITMATEVE 220 (503)
Q Consensus 212 L~sm~rEIe 220 (503)
+..+++-|.
T Consensus 171 I~~IE~sI~ 179 (196)
T 1fio_A 171 LLKLEKSMA 179 (196)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 228
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=92.56 E-value=6.2 Score=36.16 Aligned_cols=6 Identities=17% Similarity=0.601 Sum_probs=2.1
Q ss_pred HHHHHH
Q 010712 79 LRQELA 84 (503)
Q Consensus 79 LrqeLa 84 (503)
++.+|.
T Consensus 48 le~~i~ 53 (216)
T 1u5p_A 48 LEADIS 53 (216)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 229
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=92.53 E-value=0.41 Score=43.00 Aligned_cols=29 Identities=17% Similarity=0.044 Sum_probs=13.9
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 44 MMPPPEVMEQKIASQHVEMQKLATENQRL 72 (503)
Q Consensus 44 ~~p~p~~LEqeIe~~~~EIq~Le~enqrL 72 (503)
|.+.+..|.+.+..+..+++.|....+.|
T Consensus 7 ~~~~l~ql~~~~qql~~~~~~l~~~~~~L 35 (151)
T 2zdi_C 7 NNKELEKLAYEYQVLQAQAQILAQNLELL 35 (151)
T ss_dssp STTHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555444444444444
No 230
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=92.47 E-value=6.6 Score=36.29 Aligned_cols=56 Identities=14% Similarity=0.057 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010712 175 SELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 230 (503)
Q Consensus 175 ~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle 230 (503)
.++=++..|-..++-.|-.+.+.+..-.-.+...-++...+.+|-=-+++.+.|+.
T Consensus 115 ~Qll~l~Aed~AieDaIy~L~~al~~g~I~ld~ylK~vR~LaReQF~~ral~~Ki~ 170 (174)
T 2p22_A 115 NQLYNLVAQDYALTDTIECLSRMLHRGTIPLDTFVKQGRELARQQFLVRWHIQRIT 170 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433333222333444444455555544555555543
No 231
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=92.42 E-value=1.3 Score=35.84 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAH 164 (503)
Q Consensus 128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk 164 (503)
++.....+..+|+......++|..+++.|+.++..++
T Consensus 36 vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 36 IRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444443
No 232
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=92.40 E-value=8 Score=41.06 Aligned_cols=13 Identities=23% Similarity=0.294 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 010712 51 MEQKIASQHVEMQ 63 (503)
Q Consensus 51 LEqeIe~~~~EIq 63 (503)
-|+.+.....||.
T Consensus 91 gE~~~~~Kl~eLE 103 (526)
T 3iyk_A 91 GERGIQAKLKELE 103 (526)
T ss_pred hHHHHHHHHHHHH
Confidence 5555544444443
No 233
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=92.37 E-value=0.67 Score=37.10 Aligned_cols=34 Identities=18% Similarity=0.100 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 010712 172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESL 205 (503)
Q Consensus 172 ~l~~EIe~L~qELq~lR~ele~ekk~~~el~eql 205 (503)
++..|.+.|+.|+..+++....++..+.++.+++
T Consensus 41 ELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 41 ELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433
No 234
>2bsg_A Fibritin; viral protein, attachment protein, bacteriophage assembly, chaperone, coiled coil, structural protein; 15.00A {Bacteriophage T4}
Probab=92.29 E-value=0.75 Score=48.74 Aligned_cols=8 Identities=50% Similarity=0.750 Sum_probs=4.7
Q ss_pred CCCCCCCC
Q 010712 24 PDPFVSGM 31 (503)
Q Consensus 24 ~~~~~~~~ 31 (503)
.=||.-|.
T Consensus 8 ~LPfVDGv 15 (487)
T 2bsg_A 8 DLPFVDGP 15 (487)
T ss_pred cCCCCCCC
Confidence 34677763
No 235
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=92.27 E-value=0.69 Score=40.88 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 010712 105 ELQMRNLTEKIAK 117 (503)
Q Consensus 105 E~el~eL~eki~k 117 (503)
+..|.+|.+-|..
T Consensus 80 e~dLeDLe~sI~i 92 (130)
T 4dnd_A 80 EWDLEDLEETIGI 92 (130)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
No 236
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=92.23 E-value=2.1 Score=35.46 Aligned_cols=15 Identities=7% Similarity=0.262 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 010712 128 VKLEFQKSKTEAQNL 142 (503)
Q Consensus 128 Lk~ELeqLraELqqL 142 (503)
+..+|...+..+..+
T Consensus 48 l~~ei~~~~~~v~~v 62 (118)
T 3uul_A 48 FMMELSAHQSSVGSV 62 (118)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333443333333333
No 237
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=92.20 E-value=0.79 Score=42.50 Aligned_cols=17 Identities=6% Similarity=-0.007 Sum_probs=7.0
Q ss_pred ChHHHHHHHHHHHHHHH
Q 010712 47 PPEVMEQKIASQHVEMQ 63 (503)
Q Consensus 47 ~p~~LEqeIe~~~~EIq 63 (503)
+.+.+-..+-.....+.
T Consensus 8 ~~e~v~~~~w~Y~~~l~ 24 (185)
T 3r2p_A 8 PWDRVKDLATVYVDVLK 24 (185)
T ss_dssp TTHHHHHHHHHHTHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 238
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=92.12 E-value=1.2 Score=36.12 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 203 ESLQVMEKNYITMATEVEKLRAEL 226 (503)
Q Consensus 203 eqlqemEk~L~sm~rEIekLraEL 226 (503)
+++..+...|..-..||+.|..+|
T Consensus 54 ~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 54 AEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444444444444444443
No 239
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=91.99 E-value=2.2 Score=34.44 Aligned_cols=29 Identities=24% Similarity=0.340 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 128 VKLEFQKSKTEAQNLVVAREELIAKVHQL 156 (503)
Q Consensus 128 Lk~ELeqLraELqqL~~erqeLe~qiq~L 156 (503)
++.++.+.++||+.|+...++|..=.+.|
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL 44 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQKL 44 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHH
Confidence 44444455555555554444444433333
No 240
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=91.94 E-value=1.5 Score=34.70 Aligned_cols=19 Identities=11% Similarity=0.069 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHhhHH
Q 010712 174 LSELESLRQEYHHCRGTYE 192 (503)
Q Consensus 174 ~~EIe~L~qELq~lR~ele 192 (503)
+.||.+|+..++.|+.+|+
T Consensus 55 k~Ei~elrr~iq~L~~el~ 73 (77)
T 3trt_A 55 KQESTEYRRQVQSLTMEVD 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 241
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=91.79 E-value=0.41 Score=51.20 Aligned_cols=24 Identities=0% Similarity=-0.132 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 201 HLESLQVMEKNYITMATEVEKLRA 224 (503)
Q Consensus 201 l~eqlqemEk~L~sm~rEIekLra 224 (503)
+.++++++++++..++.++..+-.
T Consensus 83 l~~~i~~le~~~~~~~~~~~~~l~ 106 (485)
T 3qne_A 83 LSNEKKEIIEKEAEADKNLRSKIN 106 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555554433
No 242
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=91.66 E-value=3.4 Score=42.47 Aligned_cols=13 Identities=23% Similarity=0.480 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 010712 175 SELESLRQEYHHC 187 (503)
Q Consensus 175 ~EIe~L~qELq~l 187 (503)
.||..++.+++.+
T Consensus 101 ~e~~~l~~~l~~l 113 (365)
T 1gqe_A 101 AELDALEEKLAQL 113 (365)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 243
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=91.63 E-value=1.5 Score=36.95 Aligned_cols=76 Identities=17% Similarity=0.193 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010712 52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLE 131 (503)
Q Consensus 52 EqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~E 131 (503)
|++...+..+|..|..++++...+.+.|..-+....+ .-++... ...+.+|.++..+|+.|+.++.+++.+..|
T Consensus 14 eqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~-----nP~~GD~-~s~~~~L~e~~~kid~L~~el~K~q~~L~e 87 (98)
T 2ke4_A 14 EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEK-----TPQMGDP-ASLEPQIAETLSNIERLKLEVQKYEAWLAE 87 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-----CGGGCCG-GGSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777776666666655332222221 1112111 122556667777777777766666666555
Q ss_pred HH
Q 010712 132 FQ 133 (503)
Q Consensus 132 Le 133 (503)
++
T Consensus 88 ~e 89 (98)
T 2ke4_A 88 AE 89 (98)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 244
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=91.55 E-value=2 Score=36.12 Aligned_cols=26 Identities=4% Similarity=0.184 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 198 YNDHLESLQVMEKNYITMATEVEKLR 223 (503)
Q Consensus 198 ~~el~eqlqemEk~L~sm~rEIekLr 223 (503)
.+.+..+..++..+++.+.+...+.+
T Consensus 66 keRL~~dF~~l~~~fQ~~qr~y~ek~ 91 (97)
T 1hs7_A 66 NGKLSADFKNLKTKYQSLQQSYNQRK 91 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555554444433
No 245
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=91.48 E-value=20 Score=39.68 Aligned_cols=6 Identities=0% Similarity=-0.086 Sum_probs=2.2
Q ss_pred HHHHHH
Q 010712 49 EVMEQK 54 (503)
Q Consensus 49 ~~LEqe 54 (503)
..|++.
T Consensus 313 ~~L~~~ 318 (695)
T 2j69_A 313 PKFMDS 318 (695)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 246
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=91.48 E-value=14 Score=37.96 Aligned_cols=28 Identities=11% Similarity=0.151 Sum_probs=17.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 47 PPEVMEQKIASQHVEMQKLATENQRLAA 74 (503)
Q Consensus 47 ~p~~LEqeIe~~~~EIq~Le~enqrLa~ 74 (503)
.+..++++++....-|..|.....+|..
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 209 (386)
T 4akv_A 182 DLQDVEDRVDTFKAFSKKMDDSVLQLST 209 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777666666666655555544
No 247
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=91.48 E-value=1.2 Score=36.04 Aligned_cols=58 Identities=19% Similarity=0.064 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 010712 177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDR 234 (503)
Q Consensus 177 Ie~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~ 234 (503)
.+.|-+|+..||-.++.+......-+..++....++..+.+.++.-.++|+.+..++.
T Consensus 21 ~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 21 AEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 3445555555555554444444555556677777777777777777777777766653
No 248
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=91.45 E-value=1.1 Score=47.99 Aligned_cols=22 Identities=5% Similarity=-0.041 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010712 201 HLESLQVMEKNYITMATEVEKL 222 (503)
Q Consensus 201 l~eqlqemEk~L~sm~rEIekL 222 (503)
++++++++++++..++.++..+
T Consensus 128 l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 128 IRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 249
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix, PSI, protein structure INI midwest center for structural genomics; 1.60A {Staphylococcus aureus subsp} SCOP: a.24.27.1
Probab=91.44 E-value=8.5 Score=36.28 Aligned_cols=64 Identities=14% Similarity=0.250 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 010712 76 HGTLRQELAAAQHELQILHGQIGG-----MKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEA 139 (503)
Q Consensus 76 ~~~LrqeLa~lq~EL~~L~~qL~~-----lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraEL 139 (503)
+......|..+..+-+.|=.+|.. +....+.-+..+.++...|+.|...++..+.++..++.-+
T Consensus 35 ~~~~qkkL~~LEkk~q~LY~qI~~~~~~~v~~~adqa~~nv~eRek~l~kEk~si~~s~kef~~~k~~i 103 (199)
T 2ap3_A 35 IKTVGKKIAELDEKKKKLTEDVNSKDTAVRGKAVKDLIKNADDRLKEFEKEEDAIKKSEQDFKKAKSHV 103 (199)
T ss_dssp HHHHHHHHHHHHHHHHTTTTGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444431 1112233333344444445555555555555544444433
No 250
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=91.44 E-value=6.8 Score=42.71 Aligned_cols=49 Identities=6% Similarity=-0.010 Sum_probs=23.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhccccc
Q 010712 185 HHCRGTYEYEKKFYNDHLESLQVMEKNYIT------MATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 185 q~lR~ele~ekk~~~el~eqlqemEk~L~s------m~rEIekLraELekle~el 233 (503)
+.+..-++.+-+.+-.+.++++.+++-... +...+..|.+.+.++-+.|
T Consensus 146 D~lQ~w~e~lae~l~q~rqql~~l~~l~~~~~~~~~~~~~l~~l~~~~~~ll~~L 200 (585)
T 1y1u_A 146 DVLQSWCEKLAEIIWQNRQQIRRAEHLCQQLPIPGPVEEMLAEVNATITDIISAL 200 (585)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccHHHHHHHHHHHHHHH
Confidence 444444555555555555555555442222 2344455555555544443
No 251
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=91.40 E-value=0.49 Score=37.63 Aligned_cols=25 Identities=12% Similarity=0.149 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 198 YNDHLESLQVMEKNYITMATEVEKL 222 (503)
Q Consensus 198 ~~el~eqlqemEk~L~sm~rEIekL 222 (503)
+.++.+++++.+..+..+..++.|+
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333334444444444444443
No 252
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=91.34 E-value=0.37 Score=48.09 Aligned_cols=20 Identities=20% Similarity=0.213 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHhccccc
Q 010712 214 TMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 214 sm~rEIekLraELekle~el 233 (503)
.++.+++.++++|+.++..+
T Consensus 132 ~~~a~l~~a~a~l~~a~~~l 151 (341)
T 3fpp_A 132 TIDAQIKRNQASLDTAKTNL 151 (341)
T ss_dssp HHHHHHHHTHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33444455555555555444
No 253
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=91.31 E-value=1.6 Score=39.30 Aligned_cols=15 Identities=7% Similarity=-0.004 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 010712 141 NLVVAREELIAKVHQ 155 (503)
Q Consensus 141 qL~~erqeLe~qiq~ 155 (503)
+......++...|.+
T Consensus 60 ~F~~d~~el~~Wi~e 74 (161)
T 3lbx_A 60 VFKRDADDLGKWIME 74 (161)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444443
No 254
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=91.31 E-value=3.4 Score=33.14 Aligned_cols=30 Identities=13% Similarity=0.111 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 135 SKTEAQNLVVAREELIAKVHQLTQDLQRAH 164 (503)
Q Consensus 135 LraELqqL~~erqeLe~qiq~L~~ELqrlk 164 (503)
|+.-..++.....+|+..++.|...|..|.
T Consensus 14 l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~ 43 (99)
T 3zbh_A 14 LRGVARQYNVESSNVTELIARLDQMSHTLQ 43 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444443
No 255
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=91.19 E-value=2.6 Score=35.90 Aligned_cols=53 Identities=17% Similarity=0.191 Sum_probs=29.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 010712 124 TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE 176 (503)
Q Consensus 124 ~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~E 176 (503)
.+..+.+||.+.+.++.+|..++.+|...++.|+.+-+..-..+..|+.+-++
T Consensus 5 s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe 57 (106)
T 4e61_A 5 SLVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHT 57 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666666666666666655554444444444433333
No 256
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=91.15 E-value=1.1 Score=41.67 Aligned_cols=6 Identities=17% Similarity=0.030 Sum_probs=2.3
Q ss_pred cccccC
Q 010712 232 VDRRAD 237 (503)
Q Consensus 232 el~~~~ 237 (503)
+++..|
T Consensus 139 em~KeG 144 (175)
T 3lay_A 139 AMAQAG 144 (175)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 343333
No 257
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=91.05 E-value=0.92 Score=48.04 Aligned_cols=27 Identities=4% Similarity=0.122 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 199 NDHLESLQVMEKNYITMATEVEKLRAE 225 (503)
Q Consensus 199 ~el~eqlqemEk~L~sm~rEIekLraE 225 (503)
.++.++++++++++..++.++..+-..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (455)
T 2dq0_A 79 REIVKRIGELENEVEELKKKIDYYLWR 105 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455555555555555444333
No 258
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=91.04 E-value=12 Score=36.23 Aligned_cols=195 Identities=11% Similarity=0.084 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHH
Q 010712 33 PPMPGAFPPFDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLT 112 (503)
Q Consensus 33 p~~~~~~~p~~~~p~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~ 112 (503)
||-... .|..++++|..-+-.++.++..|...+.....+.+ +-|..+.......+..+.....+....++...
T Consensus 23 pps~~~-~~~~~~s~P~kk~~SleEIqkKLeAAEERRks~Ea------~~lk~laekrEhe~evlqKa~Een~~F~k~ae 95 (240)
T 4f61_I 23 PPSFDG-VPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEA------ELLKHLAEKREHEREVIQRAIEENNNWIKMAK 95 (240)
T ss_dssp CCSSCS-SCCCC------CCCCHHHHHHHHHHHHHHHHHHHH------HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH-HHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHH--HHHHHHHHHHH
Q 010712 113 EKI-AKMEAELKTAEPVKLE-FQKSKTEAQNLVVAREELIAKVHQLTQDL-QRAHTDVQQIPALLSE--LESLRQEYHHC 187 (503)
Q Consensus 113 eki-~kLEaEL~~le~Lk~E-LeqLraELqqL~~erqeLe~qiq~L~~EL-qrlk~elqqi~~l~~E--Ie~L~qELq~l 187 (503)
+++ .+|+......+..... ++.|+.....+...+..+...-.....++ ..++..+....+-+.. .+-|+.-.+..
T Consensus 96 EkL~~KME~~kEnReA~laal~erLkek~~~aeeVRr~~~~~~~~~~k~~~eei~~KLeaAeErRk~qea~~Lk~Laekr 175 (240)
T 4f61_I 96 EKLAQKMESNKENREAHFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLAQKMESNKENRKYQEAELLKHLAEKR 175 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcccccc
Q 010712 188 RGTYEYEKKFYNDHLESLQVMEKNYI-TMATEVEKLRAELMNAPNVDR 234 (503)
Q Consensus 188 R~ele~ekk~~~el~eqlqemEk~L~-sm~rEIekLraELekle~el~ 234 (503)
..+.+-+++.+.+...-.+.+++.+. .|+...+.-.+-+..+..+|.
T Consensus 176 EHe~eVlqka~e~n~~f~k~~eekl~~KmE~~kEnRea~~~a~~ErL~ 223 (240)
T 4f61_I 176 EHEREVIQRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQ 223 (240)
T ss_dssp HHHHHHTTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
No 259
>2bsg_A Fibritin; viral protein, attachment protein, bacteriophage assembly, chaperone, coiled coil, structural protein; 15.00A {Bacteriophage T4}
Probab=90.94 E-value=0.43 Score=50.58 Aligned_cols=32 Identities=9% Similarity=0.070 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQ 81 (503)
Q Consensus 50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~Lrq 81 (503)
.+.+.+..++..+..+...+..+...+..+++
T Consensus 51 ~VQ~NV~~Ld~N~~~~~~~~ne~~~~Vn~I~~ 82 (487)
T 2bsg_A 51 SVLRNVEVLDKNIGILKTSLETANSDIKTIQG 82 (487)
T ss_pred hhhhhHHHHhhhHHHHHhhHHHHHHHHHHHHH
Confidence 34444555555444444444444444444433
No 260
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=90.89 E-value=4.2 Score=41.79 Aligned_cols=12 Identities=8% Similarity=0.360 Sum_probs=4.7
Q ss_pred HHHHHHHHhhhh
Q 010712 86 AQHELQILHGQI 97 (503)
Q Consensus 86 lq~EL~~L~~qL 97 (503)
+..++..|...+
T Consensus 30 ~~~r~~el~~~~ 41 (365)
T 1gqe_A 30 KKERLEEVNAEL 41 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 333344443333
No 261
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=90.87 E-value=16 Score=37.58 Aligned_cols=11 Identities=9% Similarity=-0.094 Sum_probs=4.1
Q ss_pred ChHHHHHHHHH
Q 010712 47 PPEVMEQKIAS 57 (503)
Q Consensus 47 ~p~~LEqeIe~ 57 (503)
.+...=+.|..
T Consensus 100 ~i~~~w~~L~~ 110 (476)
T 1hci_A 100 DIAGAWQRLEQ 110 (476)
T ss_dssp SHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 262
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=90.83 E-value=1.5 Score=39.27 Aligned_cols=12 Identities=42% Similarity=0.249 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 010712 138 EAQNLVVAREEL 149 (503)
Q Consensus 138 ELqqL~~erqeL 149 (503)
+++.+...++.|
T Consensus 24 ~~~~l~~~~~~L 35 (151)
T 2zdi_C 24 QAQILAQNLELL 35 (151)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 263
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A {Helicobacter pylori} PDB: 4g0h_A
Probab=90.82 E-value=20 Score=38.54 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=20.3
Q ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 49 EVMEQKIAS-------QHVEMQKLATENQRLAATHGTLRQELAAA 86 (503)
Q Consensus 49 ~~LEqeIe~-------~~~EIq~Le~enqrLa~e~~~LrqeLa~l 86 (503)
..||.++-. ...-|..++..+..|......+..-.+.+
T Consensus 559 ~~ledk~~akgls~qe~nklikdfl~snkelvgk~~nfnkavaea 603 (876)
T 4dvy_P 559 RNLENKLTAKGLSLQEANKLIKDFLSSNKELAGKALNFNKAVAEA 603 (876)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHhcCCCHHHHHHHHHHHHhccHHHHHHHhhHHHHHHHh
Confidence 777777543 23334445555566655555555444443
No 264
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=90.81 E-value=0.31 Score=49.12 Aligned_cols=32 Identities=9% Similarity=0.068 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 010712 203 ESLQVMEKNYITMATEVEKLRAELMNAPNVDR 234 (503)
Q Consensus 203 eqlqemEk~L~sm~rEIekLraELekle~el~ 234 (503)
.++...+.++..++.+++.++.+|+.++..+.
T Consensus 122 ~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~ 153 (369)
T 4dk0_A 122 ATLNNAKAEMDVVQENIKQAEIEVNTAETNLG 153 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445556777888888888888888777664
No 265
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=90.74 E-value=2.1 Score=33.98 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 137 TEAQNLVVAREELIAKVHQLTQDLQ 161 (503)
Q Consensus 137 aELqqL~~erqeLe~qiq~L~~ELq 161 (503)
..|+.+...-++|+.+|+.|+.+|+
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~Le 31 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRLE 31 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 266
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=90.72 E-value=5.7 Score=32.06 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 136 KTEAQNLVVAREELIAKVHQLTQDLQRAHT 165 (503)
Q Consensus 136 raELqqL~~erqeLe~qiq~L~~ELqrlk~ 165 (503)
+.-..++.....+|+..+..|...|..|..
T Consensus 14 ~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~ 43 (98)
T 3gwk_C 14 RSSAQKYTAGSQQVTEVLNLLTQEQAVIDE 43 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333333444444444444444444444443
No 267
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=90.62 E-value=3 Score=41.71 Aligned_cols=25 Identities=12% Similarity=0.097 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 60 VEMQKLATENQRLAATHGTLRQELA 84 (503)
Q Consensus 60 ~EIq~Le~enqrLa~e~~~LrqeLa 84 (503)
++|..+..++..++.+...--..|.
T Consensus 37 ~el~~f~keRa~iE~~Yak~L~kLa 61 (320)
T 3m3w_A 37 GDLVSCFQERARIEKAYAQQLADWA 61 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555566555544333333
No 268
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=90.53 E-value=0.25 Score=49.31 Aligned_cols=25 Identities=4% Similarity=0.093 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 010712 206 QVMEKNYITMATEVEKLRAELMNAP 230 (503)
Q Consensus 206 qemEk~L~sm~rEIekLraELekle 230 (503)
+.++.++..++.+++.++..|+.+.
T Consensus 131 ~~~~a~l~~a~a~l~~a~~~l~~~~ 155 (341)
T 3fpp_A 131 GTIDAQIKRNQASLDTAKTNLDYTR 155 (341)
T ss_dssp HHHHHHHHHTHHHHTTTTTTTTSSE
T ss_pred HHHHHHHHHHHHHHHHHHHhhhCCE
Confidence 3344444555555666666666543
No 269
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=90.48 E-value=13 Score=35.64 Aligned_cols=35 Identities=6% Similarity=0.142 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAA 85 (503)
Q Consensus 51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~ 85 (503)
.+.+++.+....+.++....+|..++....+-+..
T Consensus 31 ~D~~Fe~~e~rF~~le~~~~kL~k~~k~y~~ai~~ 65 (237)
T 4avm_A 31 KDERFEQSASNFYQQQAEGHKLYKDLKNFLSAVKV 65 (237)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666677777777776666665554443
No 270
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=90.48 E-value=1.4 Score=36.14 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 010712 108 MRNLTEKIAKMEAEL 122 (503)
Q Consensus 108 l~eL~eki~kLEaEL 122 (503)
+..|..++..++.+|
T Consensus 58 ~~~l~~~l~~~e~eL 72 (89)
T 2lw1_A 58 TQKVLADMAAAEQEL 72 (89)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 271
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=90.46 E-value=0.96 Score=36.47 Aligned_cols=54 Identities=11% Similarity=0.124 Sum_probs=39.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 010712 47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGM 100 (503)
Q Consensus 47 ~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~l 100 (503)
....||++|+.++.+|..++..+..|...+....++|+.++.++..|..++..+
T Consensus 8 ~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 8 RDQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446788888888888888887777777777777777777777777777666543
No 272
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0
Probab=90.42 E-value=3.2 Score=36.63 Aligned_cols=17 Identities=24% Similarity=0.110 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010712 139 AQNLVVAREELIAKVHQ 155 (503)
Q Consensus 139 LqqL~~erqeLe~qiq~ 155 (503)
+++......++...|.+
T Consensus 48 l~~F~~d~~el~~Wi~e 64 (149)
T 3f31_A 48 FQFFQRDAEELEKWIQE 64 (149)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444444
No 273
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=90.34 E-value=0.86 Score=34.07 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHH
Q 010712 108 MRNLTEKIAKMEAELKT------AEPVKLEFQKSKTEAQNL 142 (503)
Q Consensus 108 l~eL~eki~kLEaEL~~------le~Lk~ELeqLraELqqL 142 (503)
++.|.++++.|++.+.. ++.|+...++++..++.|
T Consensus 4 vkaleekvkaleekvkalggggrieelkkkweelkkkieel 44 (67)
T 1lq7_A 4 VKALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEEL 44 (67)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHh
Confidence 34455566666655543 456666666666555443
No 274
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=90.24 E-value=4.4 Score=47.04 Aligned_cols=14 Identities=7% Similarity=-0.069 Sum_probs=7.2
Q ss_pred ChHHHHHHHHHHHH
Q 010712 47 PPEVMEQKIASQHV 60 (503)
Q Consensus 47 ~p~~LEqeIe~~~~ 60 (503)
....||+.......
T Consensus 750 ~l~~LE~~R~~~l~ 763 (1010)
T 1g8x_A 750 QLARIEEAREQRLG 763 (1010)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHH
Confidence 34566665554443
No 275
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=90.24 E-value=3.1 Score=34.64 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHHHHHHH
Q 010712 170 IPALLSELESLRQEYHH 186 (503)
Q Consensus 170 i~~l~~EIe~L~qELq~ 186 (503)
+.++..||..|.++|++
T Consensus 69 v~elqgEI~~Lnq~Lqd 85 (99)
T 3ni0_A 69 IKELENEVTKLNQELEN 85 (99)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 276
>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor, chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A
Probab=90.14 E-value=12 Score=35.03 Aligned_cols=19 Identities=16% Similarity=0.071 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 010712 78 TLRQELAAAQHELQILHGQ 96 (503)
Q Consensus 78 ~LrqeLa~lq~EL~~L~~q 96 (503)
.+.+.|..+...|..+...
T Consensus 53 ~~~~~l~~~~~~l~~~~~~ 71 (258)
T 2yfa_A 53 NTLAKLDAFSKQQAYLATT 71 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 277
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=90.07 E-value=6.3 Score=33.54 Aligned_cols=17 Identities=18% Similarity=0.343 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010712 107 QMRNLTEKIAKMEAELK 123 (503)
Q Consensus 107 el~eL~eki~kLEaEL~ 123 (503)
+++++...|..++..+.
T Consensus 13 ~v~~I~~~i~~i~~~v~ 29 (127)
T 1ez3_A 13 QVEEIRGFIDKIAENVE 29 (127)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444433333
No 278
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=89.91 E-value=0.59 Score=48.76 Aligned_cols=55 Identities=15% Similarity=0.083 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712 179 SLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 179 ~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el 233 (503)
.++.|+..++++++.++..+.+++.+++++.+.+...+.+..+|..+|.+++..+
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNI 61 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 3333333333333334444444444444445555555555555555555554433
No 279
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=89.91 E-value=1.2 Score=46.63 Aligned_cols=18 Identities=11% Similarity=0.100 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 010712 211 NYITMATEVEKLRAELMN 228 (503)
Q Consensus 211 ~L~sm~rEIekLraELek 228 (503)
++..++.++.+++.+|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 79 EAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444443
No 280
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=89.79 E-value=2.4 Score=31.87 Aligned_cols=18 Identities=22% Similarity=0.218 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010712 208 MEKNYITMATEVEKLRAE 225 (503)
Q Consensus 208 mEk~L~sm~rEIekLraE 225 (503)
+.+.+..+..+|.+++.+
T Consensus 38 ~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 38 IFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333334444444333
No 281
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=89.78 E-value=1.3 Score=46.47 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 201 HLESLQVMEKNYITMATEVEKLRA 224 (503)
Q Consensus 201 l~eqlqemEk~L~sm~rEIekLra 224 (503)
+.++++++++++..++.++..+-.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~ 99 (421)
T 1ses_A 76 LGEEAKRLEEALREKEARLEALLL 99 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555544444333
No 282
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=89.68 E-value=1.3 Score=37.09 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Q 010712 111 LTEKIAKMEAELKTAEPVKLEFQKS 135 (503)
Q Consensus 111 L~eki~kLEaEL~~le~Lk~ELeqL 135 (503)
|+++|+.|+.++..++.+..+...|
T Consensus 52 L~~EI~~L~~eI~~LE~iqs~aK~L 76 (96)
T 1t3j_A 52 LEEEIARLSKEIDQLEKMQNNSKLL 76 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3333334444433333333333333
No 283
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=89.62 E-value=2.3 Score=35.83 Aligned_cols=15 Identities=20% Similarity=0.534 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 010712 149 LIAKVHQLTQDLQRA 163 (503)
Q Consensus 149 Le~qiq~L~~ELqrl 163 (503)
+..++..-+.+|+++
T Consensus 83 ~~~klr~Yk~dL~~l 97 (102)
T 2qyw_A 83 MMSKLRNYRKDLAKL 97 (102)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 284
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=89.56 E-value=1.5 Score=46.94 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 010712 206 QVMEKNYITMATEVEKLRAELMN 228 (503)
Q Consensus 206 qemEk~L~sm~rEIekLraELek 228 (503)
+++.+++..++.++.+++++|..
T Consensus 114 ~~l~~~i~~le~~~~~~~~~~~~ 136 (484)
T 3lss_A 114 KDLSDQVAGLAKEAQQLEEERDK 136 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 285
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=89.54 E-value=1.3 Score=35.16 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHH
Q 010712 131 EFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYE 192 (503)
Q Consensus 131 ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele 192 (503)
++++++++|++|+....++...+-.|.++ |=.+.++|.++-++.=+.-+++..++++++
T Consensus 4 di~eLkkevkKL~~~A~q~kmdLHDLaEd---LP~~w~~i~~vA~~tyda~~~l~~ak~~L~ 62 (71)
T 2js5_A 4 GAEELKAKLKKLNAQATALKMDLHDLAED---LPTGWNRIMEVAEKTYEAYRQLDEFRKSTA 62 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTTSGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHhcc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777766666655 333445555555554444455555444443
No 286
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=89.53 E-value=1.3 Score=37.19 Aligned_cols=41 Identities=15% Similarity=0.247 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 010712 101 KSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQN 141 (503)
Q Consensus 101 kae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqq 141 (503)
..+++.+|++|..+|..||.-......|+.+..-|..||..
T Consensus 49 ~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~ 89 (96)
T 1t3j_A 49 QKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELEN 89 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33444455555555555555544455555555444444443
No 287
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=89.50 E-value=0.92 Score=36.83 Aligned_cols=62 Identities=13% Similarity=0.156 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHH
Q 010712 130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYE 194 (503)
Q Consensus 130 ~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~e 194 (503)
.++++|+++|++|+....++...+..|.++| =.+.++|.++-++.=+.-+++..++++++.+
T Consensus 15 ~di~eLkkevkKL~~~A~q~kmdLHDLaEdL---P~~w~~i~~vA~~tyda~~~l~~ak~~L~~~ 76 (81)
T 3csx_A 15 EAVADLKKKVRKLNSKAGQMKMDLHDLAEGL---PTDYENLVETAEKTYEIFRELDQLKKKLNIW 76 (81)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHT---TTTGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777777777777776663 3344555555555555555555555554433
No 288
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=89.15 E-value=2.7 Score=32.90 Aligned_cols=56 Identities=13% Similarity=0.167 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 172 ALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 227 (503)
Q Consensus 172 ~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELe 227 (503)
+|...+.+.+.||++|..-+..++.++..-.+--+.|+.+....+..+..|..++.
T Consensus 7 eL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~~ 62 (74)
T 2q6q_A 7 ELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKLS 62 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcc
Confidence 34444445555555555555555555555555555666666666666655555443
No 289
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=89.15 E-value=2.1 Score=36.25 Aligned_cols=26 Identities=27% Similarity=0.203 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 63 QKLATENQRLAATHGTLRQELAAAQH 88 (503)
Q Consensus 63 q~Le~enqrLa~e~~~LrqeLa~lq~ 88 (503)
++|+.+....+.++...+++|..++.
T Consensus 38 eeLQ~Ei~~~E~QL~iArQKLkdAe~ 63 (107)
T 2k48_A 38 QELQENITAHEQQLVTARQKLKDAEK 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444443
No 290
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=89.03 E-value=1.6 Score=35.59 Aligned_cols=19 Identities=42% Similarity=0.692 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 010712 79 LRQELAAAQHELQILHGQI 97 (503)
Q Consensus 79 LrqeLa~lq~EL~~L~~qL 97 (503)
|..+|+.++.||..|+-.+
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqi 43 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQI 43 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHH
Confidence 3344444444444444433
No 291
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=88.99 E-value=19 Score=35.69 Aligned_cols=17 Identities=6% Similarity=0.040 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010712 68 ENQRLAATHGTLRQELA 84 (503)
Q Consensus 68 enqrLa~e~~~LrqeLa 84 (503)
++..+..+...++.+.+
T Consensus 38 el~~f~keRa~iE~~Ya 54 (320)
T 3m3w_A 38 DLVSCFQERARIEKAYA 54 (320)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444445544433
No 292
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=88.95 E-value=6.5 Score=37.43 Aligned_cols=35 Identities=17% Similarity=0.175 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 53 QKIASQHVEMQKLATENQRLAATHGTLRQELAAAQ 87 (503)
Q Consensus 53 qeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq 87 (503)
+-+.-+...+..+..++..|..+.+.|.++...+.
T Consensus 125 elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~ 159 (213)
T 1ik9_A 125 ELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQ 159 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555444444444333
No 293
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=88.81 E-value=1.1 Score=46.63 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 170 IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAE 225 (503)
Q Consensus 170 i~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraE 225 (503)
|.+++.+|..|++++..++.+++.++..+.++.+++.+.+.....|..+|++|+-.
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgn 60 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGN 60 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 44455556666666666666666666666666666666666666666667666643
No 294
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=88.77 E-value=0.35 Score=47.22 Aligned_cols=38 Identities=8% Similarity=-0.018 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712 194 EKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (503)
Q Consensus 194 ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~ 231 (503)
+++.+..+.++...+.+.+..+.+||.+|++||++|..
T Consensus 59 L~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 59 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33344444444455555666667777777777777643
No 295
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=88.76 E-value=2.1 Score=34.11 Aligned_cols=53 Identities=11% Similarity=0.077 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010712 180 LRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNV 232 (503)
Q Consensus 180 L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~e 232 (503)
++..|..++.++...+........+.+++-+-...++.||...+.-|+--+.+
T Consensus 10 ~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLEGEe~R 62 (74)
T 2xv5_A 10 SRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEEER 62 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 33333333333333333344444555566666667788888888777654443
No 296
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=88.75 E-value=1.5 Score=32.64 Aligned_cols=45 Identities=11% Similarity=0.136 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712 53 QKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI 97 (503)
Q Consensus 53 qeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL 97 (503)
.+|+.+..+|+.|-.+...|..++..|+.++..++.|..+...+|
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345556666666666666666666666666666666655555554
No 297
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=88.69 E-value=9.1 Score=31.51 Aligned_cols=15 Identities=40% Similarity=0.676 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 010712 102 SERELQMRNLTEKIA 116 (503)
Q Consensus 102 ae~E~el~eL~eki~ 116 (503)
++.++.+++|+.+|+
T Consensus 42 ~~R~~~i~el~akid 56 (101)
T 1d7m_A 42 AEREKRLRELEAKLD 56 (101)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444555554443
No 298
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=88.38 E-value=1 Score=32.10 Aligned_cols=39 Identities=15% Similarity=0.138 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712 195 KKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 195 kk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el 233 (503)
++++..+++..-.+|..-+.+++-|..|+.|++.+++++
T Consensus 9 rkkiarlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 9 RKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444445555555555555544
No 299
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=88.35 E-value=2.9 Score=42.16 Aligned_cols=36 Identities=17% Similarity=0.080 Sum_probs=24.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 47 PPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQE 82 (503)
Q Consensus 47 ~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~Lrqe 82 (503)
....+++.+..+..++..|..+..+|..++..|++.
T Consensus 93 ~~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 93 SLEEAEAVLRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 356667677777777777776666666666666555
No 300
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=88.35 E-value=5 Score=36.65 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010712 107 QMRNLTEKIAKMEAELKT 124 (503)
Q Consensus 107 el~eL~eki~kLEaEL~~ 124 (503)
++.++...|..++..+..
T Consensus 44 ~v~~I~~~i~~i~~~v~~ 61 (180)
T 1s94_A 44 QVEEIRAMIDKISDNVDA 61 (180)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444443333
No 301
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=88.25 E-value=6.2 Score=34.22 Aligned_cols=13 Identities=23% Similarity=0.434 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q 010712 108 MRNLTEKIAKMEA 120 (503)
Q Consensus 108 l~eL~eki~kLEa 120 (503)
++++..++-.++.
T Consensus 23 ~~~~~~~~~~~~~ 35 (125)
T 4g2k_A 23 IEEILSKIYHIEN 35 (125)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhH
Confidence 3333333333333
No 302
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=88.13 E-value=1.7 Score=31.04 Aligned_cols=40 Identities=18% Similarity=0.327 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712 58 QHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI 97 (503)
Q Consensus 58 ~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL 97 (503)
+..+|.+|..++-+|+.+-+.|+.-|+.++.+|.+|+.++
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555566665555544
No 303
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A {Helicobacter pylori} PDB: 4g0h_A
Probab=88.12 E-value=23 Score=38.08 Aligned_cols=15 Identities=13% Similarity=0.127 Sum_probs=9.0
Q ss_pred HHHHHHHHhcccccc
Q 010712 220 EKLRAELMNAPNVDR 234 (503)
Q Consensus 220 ekLraELekle~el~ 234 (503)
++|...|++|...+.
T Consensus 783 QELtqKVdNLNQAVs 797 (876)
T 4dvy_P 783 QKVTDKVDNLNQAVS 797 (876)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 355566677766653
No 304
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=88.10 E-value=8.4 Score=32.04 Aligned_cols=6 Identities=33% Similarity=0.528 Sum_probs=2.1
Q ss_pred HHHHHH
Q 010712 151 AKVHQL 156 (503)
Q Consensus 151 ~qiq~L 156 (503)
.+|..|
T Consensus 74 gEI~~L 79 (99)
T 3ni0_A 74 NEVTKL 79 (99)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 305
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=88.10 E-value=3.6 Score=34.27 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHH-HHHhhh
Q 010712 147 EELIAKVHQLTQDLQR-AHTDVQ 168 (503)
Q Consensus 147 qeLe~qiq~L~~ELqr-lk~elq 168 (503)
..+..++..-+.+|.+ ++.+++
T Consensus 68 ~~~~~klr~Yk~dl~~~lk~~lk 90 (97)
T 3onj_A 68 ATYKAKLREWKKTIQSDIKRPLQ 90 (97)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444 443333
No 306
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=87.94 E-value=2.9 Score=44.66 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 198 YNDHLESLQVMEKNYITMATEVEKLRAEL 226 (503)
Q Consensus 198 ~~el~eqlqemEk~L~sm~rEIekLraEL 226 (503)
...++++++++++++..++.++..+-..|
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~l~~i 141 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKLMLNV 141 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455555666666666666555444433
No 307
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=87.90 E-value=0.98 Score=35.73 Aligned_cols=11 Identities=36% Similarity=0.688 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 010712 111 LTEKIAKMEAE 121 (503)
Q Consensus 111 L~eki~kLEaE 121 (503)
|...+..|..|
T Consensus 55 Lr~~i~~L~~E 65 (70)
T 1gd2_E 55 LRQKVRQLEEE 65 (70)
T ss_dssp HTTHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33334444443
No 308
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=87.86 E-value=0.5 Score=46.13 Aligned_cols=18 Identities=6% Similarity=0.340 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010712 107 QMRNLTEKIAKMEAELKT 124 (503)
Q Consensus 107 el~eL~eki~kLEaEL~~ 124 (503)
.++++..++.+|++|+++
T Consensus 76 ~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 76 TLKEARQQLLALREEVDR 93 (251)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 309
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=87.41 E-value=0.52 Score=49.46 Aligned_cols=12 Identities=33% Similarity=0.598 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 010712 215 MATEVEKLRAEL 226 (503)
Q Consensus 215 m~rEIekLraEL 226 (503)
++.++.+++++|
T Consensus 87 ~~~~~~~~~~~~ 98 (425)
T 2dq3_A 87 LEEELRKVEEEL 98 (425)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 310
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=87.26 E-value=26 Score=35.06 Aligned_cols=28 Identities=0% Similarity=-0.143 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 010712 177 LESLRQEYHHCRGTYEYEKKFYNDHLES 204 (503)
Q Consensus 177 Ie~L~qELq~lR~ele~ekk~~~el~eq 204 (503)
|..++.+++.++.+++..++.+..+.+.
T Consensus 228 l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 228 AARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555554444444433
No 311
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae}
Probab=87.25 E-value=25 Score=34.89 Aligned_cols=13 Identities=8% Similarity=0.391 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHh
Q 010712 216 ATEVEKLRAELMN 228 (503)
Q Consensus 216 ~rEIekLraELek 228 (503)
++||+....++..
T Consensus 257 e~eI~~Fa~~~~~ 269 (287)
T 3g9g_A 257 QSEIDRFAKDASQ 269 (287)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 5566665555543
No 312
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=87.25 E-value=6.9 Score=32.53 Aligned_cols=15 Identities=7% Similarity=0.089 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 010712 51 MEQKIASQHVEMQKL 65 (503)
Q Consensus 51 LEqeIe~~~~EIq~L 65 (503)
+.+++......++.|
T Consensus 11 V~~D~~~ql~~l~~~ 25 (95)
T 2c5k_T 11 VVKDTKEQLNRINNY 25 (95)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 313
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=87.23 E-value=4.5 Score=31.83 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Q 010712 208 MEKNYITMATEVEKLRAELMNAP 230 (503)
Q Consensus 208 mEk~L~sm~rEIekLraELekle 230 (503)
+-.++.++.-|-.-|+..|.+++
T Consensus 51 LNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 51 LNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---
T ss_pred hhHHHHHhHHHHHHHHHHHHHHh
Confidence 33444444444444444444443
No 314
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=87.21 E-value=44 Score=37.77 Aligned_cols=12 Identities=17% Similarity=0.169 Sum_probs=5.1
Q ss_pred HHHHHHHHHHhc
Q 010712 218 EVEKLRAELMNA 229 (503)
Q Consensus 218 EIekLraELekl 229 (503)
|.+|.++-++.+
T Consensus 791 e~~kf~~~v~ai 802 (861)
T 2zuo_A 791 EAKKFKEMTEAL 802 (861)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhh
Confidence 344444444433
No 315
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=87.11 E-value=3.1 Score=32.75 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=13.8
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 44 MMPPPEVMEQKIASQHVEMQKLATENQRLAA 74 (503)
Q Consensus 44 ~~p~p~~LEqeIe~~~~EIq~Le~enqrLa~ 74 (503)
+..+-..+++.|..+..++...+.+..+|.+
T Consensus 9 ~~~~~~~~~~~l~~Lr~eL~~Ke~eI~~L~e 39 (75)
T 3a7o_A 9 IVSHDDALLNTLAILQKELKSKEQEIRRLKE 39 (75)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444444444443
No 316
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=86.85 E-value=5.9 Score=42.04 Aligned_cols=23 Identities=4% Similarity=0.043 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHH
Q 010712 176 ELESLRQEYHHCRGTYEYEKKFY 198 (503)
Q Consensus 176 EIe~L~qELq~lR~ele~ekk~~ 198 (503)
|+++++.|+++|+.+++++++.+
T Consensus 417 e~~kl~~E~~~l~~~i~~l~~iL 439 (470)
T 3ilw_A 417 ERQRIIDDLAKIEAEIADLEDIL 439 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555555555544444433
No 317
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=86.80 E-value=11 Score=38.27 Aligned_cols=146 Identities=15% Similarity=0.117 Sum_probs=0.0
Q ss_pred HhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--
Q 010712 93 LHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI-- 170 (503)
Q Consensus 93 L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi-- 170 (503)
+..-+..+-...-..++.+.++++.+|.++-.-.. .....++..++.++..+...+..+..-|.++.......
T Consensus 182 l~~lld~ivd~y~~~l~~l~~~id~lE~~v~~~~~-----~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~ 256 (363)
T 2iub_A 182 LYSLIDALVDDYFVLLEKIDDEIDVLEEEVLERPE-----KETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVPPLIE 256 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCCCCCC
Q 010712 171 PALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRADGSYGGATGN 246 (503)
Q Consensus 171 ~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~~~~~~y~~~~~~ 246 (503)
++.+..+.++..++.++...++..+..+..+.+....+..+. ..++.|.=.-+.-+=--+.=-.|-||||+.+
T Consensus 257 ~~~~~~lrDv~d~~~~~~e~~~~~re~l~~l~d~~~s~is~~---~N~imk~LTiit~IflP~T~IaGiyGMNf~~ 329 (363)
T 2iub_A 257 KETVPYFRDVYDHTIQIADTVETFRDIVSGLLDVYLSSVSNK---TNEVMKVLTIIATIFMPLTFIAGIYGMNFEY 329 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTSCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
No 318
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=86.67 E-value=4 Score=34.26 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHH
Q 010712 103 ERELQMRNLTEKIAKMEAELKTA-----EPVKLEFQKSKTEAQNLV 143 (503)
Q Consensus 103 e~E~el~eL~eki~kLEaEL~~l-----e~Lk~ELeqLraELqqL~ 143 (503)
+.+..+.+..+-|..|+-|++.+ ..+...|...+.+|.+++
T Consensus 42 ~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk 87 (102)
T 1vcs_A 42 NVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLE 87 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555432 233344444444444433
No 319
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=86.65 E-value=2.6 Score=48.98 Aligned_cols=50 Identities=18% Similarity=0.160 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHHHHHHh
Q 010712 140 QNLVVAREELIAKVHQLTQDLQR--AHTDVQQIPALLSELESLRQEYHHCRG 189 (503)
Q Consensus 140 qqL~~erqeLe~qiq~L~~ELqr--lk~elqqi~~l~~EIe~L~qELq~lR~ 189 (503)
++...+..+++.++++.+..|.. ...++..++.+.++.++++.+|...+.
T Consensus 889 qkF~rka~~~e~Wl~ek~~~l~s~d~g~dL~~Vqal~KKhea~e~dl~a~e~ 940 (1010)
T 1g8x_A 889 QKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEG 940 (1010)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHSSCCSCCSTTTTGGGTTSHHHHTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555554444421 111233344444444444444444333
No 320
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=86.57 E-value=23 Score=33.93 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHhccccc
Q 010712 214 TMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 214 sm~rEIekLraELekle~el 233 (503)
.+.+.+.+|..+...|....
T Consensus 201 ~i~~r~~~l~~~w~~L~~~~ 220 (235)
T 2odv_A 201 QMYRRVYRLHKRLVAIRTEY 220 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555666666665555443
No 321
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=86.52 E-value=9.8 Score=34.05 Aligned_cols=14 Identities=7% Similarity=0.349 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 010712 149 LIAKVHQLTQDLQR 162 (503)
Q Consensus 149 Le~qiq~L~~ELqr 162 (503)
|..+++.++.+++.
T Consensus 45 li~eF~~~Q~~~~~ 58 (151)
T 2pih_A 45 IVNQIKALQKQAVN 58 (151)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444444433
No 322
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=86.50 E-value=1.5 Score=45.92 Aligned_cols=55 Identities=16% Similarity=0.167 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712 179 SLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 179 ~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el 233 (503)
.|+.|+.++++.++.+++.+.++..+++++++++...+.+..+|..+|..++..+
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnI 61 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNI 61 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 3444444444444444444444444445555555555555556666665555444
No 323
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=86.48 E-value=3.2 Score=31.50 Aligned_cols=58 Identities=29% Similarity=0.420 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHH--------HhHHHHHHHHHHHHHHH
Q 010712 76 HGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKT--------AEPVKLEFQKSKTEAQN 141 (503)
Q Consensus 76 ~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~--------le~Lk~ELeqLraELqq 141 (503)
+.++++.|+.++.+|+.|--.-. ++...+..|...+.|+.. ++.|++|...++.||+.
T Consensus 4 waefkqrlaaiktrlqalggsea--------elaafekeiaafeselqaykgkgnpevealrkeaaairdelqa 69 (73)
T 2a3d_A 4 WAEFKQRLAAIKTRLQALGGSEA--------ELAAFEKEIAAFESELQAYKGKGNPEVEALRKEAAAIRDELQA 69 (73)
T ss_dssp HHHHHHHHHHHHHHHHHCSSGGG--------THHHHHHHHHHHHHHHHHSSSCCSSTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHH
Confidence 45677888888888777644321 344455566677777763 45676666666666653
No 324
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=86.47 E-value=20 Score=37.51 Aligned_cols=134 Identities=9% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 70 QRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREEL 149 (503)
Q Consensus 70 qrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeL 149 (503)
.++..+...+ ...+.....|.+++.-+.....-+...|..+...+..|-. .=.-...-+.+..+.+.|......+
T Consensus 9 ~q~r~~~s~~-~~~~~~~~~l~~le~~~~~~~~gl~~~l~~ff~alq~la~----~P~~~~~R~~vl~~a~~La~~~n~~ 83 (463)
T 2d4y_A 9 NQLRGAQNQS-SGLTTRYEQMSKIDNLLADKSSSLSGSLQSFFTSLQTLVS----NAEDPAARQALIGKAEGLVNQFKTT 83 (463)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHH----TTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-HHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHH
Q 010712 150 IAKVHQLTQDL-QRAHTDVQQIPALLSELESLRQEYHHCR-----GTYEYEKKFYNDHLESLQVM 208 (503)
Q Consensus 150 e~qiq~L~~EL-qrlk~elqqi~~l~~EIe~L~qELq~lR-----~ele~ekk~~~el~eqlqem 208 (503)
..+++.++.++ .+++..+.+|..+.++|.+|.++|.+.+ ..-..+..+.+.+..+|.++
T Consensus 84 ~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~~~~~~~~g~~~ndLlDqRD~ll~eLS~~ 148 (463)
T 2d4y_A 84 DQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRMTGVGAGASPNDLLDQRDQLVSELNKI 148 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHhHHHHHHHHHHHHhh
No 325
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=86.38 E-value=11 Score=30.02 Aligned_cols=20 Identities=10% Similarity=0.076 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010712 144 VAREELIAKVHQLTQDLQRA 163 (503)
Q Consensus 144 ~erqeLe~qiq~L~~ELqrl 163 (503)
.....+....++|+..|.+|
T Consensus 16 ~~A~~~~~~~~~i~~~l~~L 35 (99)
T 3zbh_A 16 GVARQYNVESSNVTELIARL 35 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 326
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=86.36 E-value=7.9 Score=36.82 Aligned_cols=23 Identities=13% Similarity=0.079 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010712 71 RLAATHGTLRQELAAAQHELQIL 93 (503)
Q Consensus 71 rLa~e~~~LrqeLa~lq~EL~~L 93 (503)
.+..+...|..+...++.++..+
T Consensus 136 ~~~~~~~~L~~e~~~l~~~~~~l 158 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLRDWNDV 158 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334433333333333333
No 327
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=86.17 E-value=2.2 Score=34.79 Aligned_cols=28 Identities=11% Similarity=0.146 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010712 71 RLAATHGTLRQELAAAQHELQILHGQIG 98 (503)
Q Consensus 71 rLa~e~~~LrqeLa~lq~EL~~L~~qL~ 98 (503)
.|..+++.|+.+++.++-.++.+..+|.
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ 51 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLN 51 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3444444555555555555555544443
No 328
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=86.10 E-value=3.3 Score=29.17 Aligned_cols=42 Identities=24% Similarity=0.261 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712 56 ASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI 97 (503)
Q Consensus 56 e~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL 97 (503)
.+++.|+..|+.++..|....--.+.-|+-++.+|..|++.|
T Consensus 6 aqlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 6 AQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555554433333333444445554444433
No 329
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=86.06 E-value=14 Score=30.89 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010712 208 MEKNYITMATEVEKLRAE 225 (503)
Q Consensus 208 mEk~L~sm~rEIekLraE 225 (503)
+..++.....+|++|+.+
T Consensus 83 ~~~klr~Yk~dL~~lk~e 100 (102)
T 2qyw_A 83 MMSKLRNYRKDLAKLHRE 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 333444444444444444
No 330
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=86.03 E-value=27 Score=34.17 Aligned_cols=31 Identities=6% Similarity=0.133 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 010712 204 SLQVMEKNYITMATEVEKLRAELMNAPNVDR 234 (503)
Q Consensus 204 qlqemEk~L~sm~rEIekLraELekle~el~ 234 (503)
..+.|-++.+.++++|......|..|..+..
T Consensus 151 s~~~LLkkh~~le~~l~~~~~~i~~L~~~a~ 181 (283)
T 3pe0_A 151 RLEDLLQDAQDEKEQLNEYKGHLSGLAKRAK 181 (283)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666777777777777777766544
No 331
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=85.96 E-value=18 Score=31.95 Aligned_cols=14 Identities=7% Similarity=0.067 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHhcc
Q 010712 217 TEVEKLRAELMNAP 230 (503)
Q Consensus 217 rEIekLraELekle 230 (503)
.-+...+.-|.-+.
T Consensus 117 ~~l~~~~~~L~~L~ 130 (154)
T 3opc_A 117 VNLRHTQESLDALR 130 (154)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444555554
No 332
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=85.87 E-value=16 Score=31.24 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 131 EFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTD 166 (503)
Q Consensus 131 ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~e 166 (503)
+|..+|.+|..+..++.+|-.++-.+..++.+++.+
T Consensus 13 ~L~~lR~~ID~ID~~il~LL~~R~~~~~~I~~~K~~ 48 (114)
T 3rmi_A 13 ELAYLRQSIDNFDITLIHILAERFRCTQAIGRLKAR 48 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555543
No 333
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=85.58 E-value=2.6 Score=31.31 Aligned_cols=32 Identities=9% Similarity=0.041 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712 198 YNDHLESLQVMEKNYITMATEVEKLRAELMNA 229 (503)
Q Consensus 198 ~~el~eqlqemEk~L~sm~rEIekLraELekl 229 (503)
+..+.++...|.+.|.....+|++|+++|+++
T Consensus 18 l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 18 IDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444445555555555666666666654
No 334
>2etd_A LEMA protein; bromodomain-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.28A {Thermotoga maritima} SCOP: a.29.9.1
Probab=85.56 E-value=22 Score=32.58 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHH
Q 010712 177 LESLRQEYHHCRGTYEYEKKFY 198 (503)
Q Consensus 177 Ie~L~qELq~lR~ele~ekk~~ 198 (503)
+..|+.||..++..|...+..+
T Consensus 105 f~~Lq~eL~~~EnrIa~ARr~Y 126 (171)
T 2etd_A 105 FRQLMDELAGTENRIAVARRDY 126 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333
No 335
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A {Helicobacter pylori}
Probab=85.53 E-value=37 Score=35.20 Aligned_cols=13 Identities=46% Similarity=0.608 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 010712 148 ELIAKVHQLTQDL 160 (503)
Q Consensus 148 eLe~qiq~L~~EL 160 (503)
++..+|+.|.+-+
T Consensus 479 kV~aKIDNLNQaa 491 (569)
T 4dvz_A 479 EWISKVENLNAAL 491 (569)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHH
Confidence 3444444444433
No 336
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=85.42 E-value=2 Score=34.64 Aligned_cols=43 Identities=9% Similarity=0.039 Sum_probs=18.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 182 QEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRA 224 (503)
Q Consensus 182 qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLra 224 (503)
..|.+|+..+.+....++++.+.+....+.+..|.+.+..|..
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~ 56 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 56 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443344334433333333
No 337
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=85.42 E-value=3.9 Score=45.38 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHH
Q 010712 176 ELESLRQEYHHCRGTYEYEKKFY 198 (503)
Q Consensus 176 EIe~L~qELq~lR~ele~ekk~~ 198 (503)
|++++++|+++++.+++++++.+
T Consensus 638 e~~kl~~E~~~l~~~i~~l~~iL 660 (692)
T 2xcs_B 638 ERDKIEAEYNELLNYISELETIL 660 (692)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555444444333
No 338
>2wps_A Trimeric autotransporter adhesin fragment; membrane protein, ION coordination, hydrophobic core, TAA, stutter, stammer, coiled coil; 2.60A {Salmonella enterica subsp} PDB: 2wpr_A
Probab=85.42 E-value=9.7 Score=32.02 Aligned_cols=80 Identities=18% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHhhhhccchHHHHHHHHHH
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATHGTLRQ-----------------ELAAAQHELQILHGQIGGMKSERELQMRNL 111 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~~~Lrq-----------------eLa~lq~EL~~L~~qL~~lkae~E~el~eL 111 (503)
.++|.+|+....+|-.++.+..+|.+.-...-. .++.....+..|...+..+..+.|.++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~sQLktTnDdvA~NTTdIaTnT~NIa~nT~NIATNTTNItNLtdsV~~L~dDAed~~~~~ 81 (107)
T 2wps_A 2 KQIEDKIEEILSKIYHIENEIARIKKLIEKVDQNTADITTNTNSINQNTTDIATNTTNINNLSDSITTLMKQIEDKIEEI 81 (107)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhccchhhccchhhhccccchhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhHH
Q 010712 112 TEKIAKMEAELKTAEPV 128 (503)
Q Consensus 112 ~eki~kLEaEL~~le~L 128 (503)
..++-.++.|+.++.+|
T Consensus 82 ~~~~~~~~~~~~~~~~~ 98 (107)
T 2wps_A 82 LSKIYHIENEIARIKKL 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
No 339
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=85.41 E-value=9.1 Score=36.50 Aligned_cols=10 Identities=30% Similarity=0.839 Sum_probs=0.0
Q ss_pred CCCCCCCCCCC
Q 010712 19 PGMMHPDPFVS 29 (503)
Q Consensus 19 ~~~~~~~~~~~ 29 (503)
.||| ||.|-.
T Consensus 14 ~~~i-pe~wf~ 23 (214)
T 2cly_A 14 FGLI-PEEFFQ 23 (214)
T ss_dssp -----------
T ss_pred cccC-hHHHHH
Confidence 3444 555544
No 340
>2p01_A Alpha-2-macroglobulin receptor-associated protein; RAP, cell adhesion; NMR {Homo sapiens} PDB: 2p03_A
Probab=85.39 E-value=11 Score=37.96 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712 204 SLQVMEKNYITMATEVEKLRAELMNA 229 (503)
Q Consensus 204 qlqemEk~L~sm~rEIekLraELekl 229 (503)
..+.|++.+..+.+.|++|...|+..
T Consensus 289 k~~~leek~Kk~~rKV~Kl~~~Le~r 314 (323)
T 2p01_A 289 KHALLEGRTKELGYTVKKHLQDLSGR 314 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888877764
No 341
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=85.33 E-value=15 Score=30.45 Aligned_cols=24 Identities=4% Similarity=0.131 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhc
Q 010712 206 QVMEKNYITMATEVEK-LRAELMNA 229 (503)
Q Consensus 206 qemEk~L~sm~rEIek-LraELekl 229 (503)
..+..++....++|.+ |+.+|.++
T Consensus 68 ~~~~~klr~Yk~dl~~~lk~~lk~l 92 (97)
T 3onj_A 68 ATYKAKLREWKKTIQSDIKRPLQSL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555 55555554
No 342
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=85.24 E-value=6.2 Score=35.61 Aligned_cols=11 Identities=9% Similarity=0.299 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 010712 176 ELESLRQEYHH 186 (503)
Q Consensus 176 EIe~L~qELq~ 186 (503)
+|+.++..++.
T Consensus 74 qi~~iq~q~~~ 84 (150)
T 4dci_A 74 QVANIQQQVAG 84 (150)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444333
No 343
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=85.22 E-value=24 Score=32.87 Aligned_cols=35 Identities=11% Similarity=0.182 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ 161 (503)
Q Consensus 127 ~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELq 161 (503)
.|...|..++.-|.....++..|..++..|..+++
T Consensus 84 sLs~RLaRvenaL~~~~~Er~sL~~K~~~L~~Q~E 118 (190)
T 3thf_A 84 SLSERLAQTESSLETRQQERGALESKRDLLYEQME 118 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHccChhHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555555555555554443
No 344
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=85.21 E-value=16 Score=38.60 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 010712 107 QMRNLTEKIAKMEAE 121 (503)
Q Consensus 107 el~eL~eki~kLEaE 121 (503)
.+.+|...+..++.+
T Consensus 300 ~~~~L~~~l~~v~~~ 314 (483)
T 2j1d_G 300 EISTLRSGLKAVETE 314 (483)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 345
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=85.09 E-value=34 Score=34.52 Aligned_cols=37 Identities=3% Similarity=-0.033 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAA 86 (503)
Q Consensus 50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~l 86 (503)
.+-..|...+.++..|+..+.+|......+..-+..+
T Consensus 18 ~FR~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~ 54 (385)
T 2q13_A 18 QTRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNEL 54 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888888888888877777766665544443
No 346
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=85.03 E-value=11 Score=31.47 Aligned_cols=18 Identities=0% Similarity=0.008 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHhhHH
Q 010712 175 SELESLRQEYHHCRGTYE 192 (503)
Q Consensus 175 ~EIe~L~qELq~lR~ele 192 (503)
.+|.++..+|+.|+.++.
T Consensus 62 ~~L~e~~~kid~L~~el~ 79 (98)
T 2ke4_A 62 PQIAETLSNIERLKLEVQ 79 (98)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 347
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=85.00 E-value=28 Score=33.39 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=16.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 45 MPPPEVMEQKIASQHVEMQKLATENQR 71 (503)
Q Consensus 45 ~p~p~~LEqeIe~~~~EIq~Le~enqr 71 (503)
.+.-..||++++..+..+.+|......
T Consensus 30 ~~d~~~lE~r~d~~k~~~~kl~k~~~~ 56 (256)
T 1zww_A 30 DDDFKEMERKVDVTSRAVMEIMTKTIE 56 (256)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566677776666666666655543
No 348
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=84.53 E-value=28 Score=32.95 Aligned_cols=28 Identities=4% Similarity=0.156 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 139 AQNLVVAREELIAKVHQLTQDLQRAHTD 166 (503)
Q Consensus 139 LqqL~~erqeLe~qiq~L~~ELqrlk~e 166 (503)
+..+..++.+++..+..|..+|.+.+..
T Consensus 146 ~l~~lvelA~le~~~~~L~~eIkkT~RR 173 (217)
T 3aon_A 146 LLPKLLKLAEVEKTCQLMAEEIEKTRRR 173 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3344445556666666666666554443
No 349
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=84.33 E-value=17 Score=32.35 Aligned_cols=25 Identities=12% Similarity=0.119 Sum_probs=10.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Q 010712 121 ELKTAEPVKLEFQKSKTEAQNLVVA 145 (503)
Q Consensus 121 EL~~le~Lk~ELeqLraELqqL~~e 145 (503)
+..+...|.++|+.+...+.+|..+
T Consensus 57 dy~EYk~Lhaev~~v~~~F~~Ld~~ 81 (140)
T 1xaw_A 57 GLQEYKSLQSVLDEINKELSRLDKE 81 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444333
No 350
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=84.31 E-value=4.1 Score=40.85 Aligned_cols=57 Identities=9% Similarity=0.141 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712 175 SELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (503)
Q Consensus 175 ~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~ 231 (503)
.||..+....+.++..+..+......+.++|.-....+-.+++++..++-++-++++
T Consensus 90 ~e~~~~~~n~e~l~~rl~aL~~~~~~~~~eLsf~kgd~~~ier~ln~~~pdw~~l~k 146 (302)
T 2y3a_B 90 KEMQRILLNSERLKSRIAEIHESRTKLEQDLRAQASDNREIDKRMNSLKPDLMQLRK 146 (302)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHhhhhcchhhhhhhhhHHHhHHhhhccCChHHHHHhh
Confidence 345545444444444444444333444444444444444556666666666655544
No 351
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=84.21 E-value=4.8 Score=34.46 Aligned_cols=13 Identities=15% Similarity=0.335 Sum_probs=6.0
Q ss_pred ChHHHHHHHHHHH
Q 010712 47 PPEVMEQKIASQH 59 (503)
Q Consensus 47 ~p~~LEqeIe~~~ 59 (503)
.++.|+.+|...+
T Consensus 23 ~ieeLq~Ei~~~E 35 (113)
T 4fi5_A 23 TMEELQREINAHE 35 (113)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 4444444444444
No 352
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=84.01 E-value=19 Score=36.00 Aligned_cols=10 Identities=30% Similarity=0.408 Sum_probs=8.1
Q ss_pred CCCCCCCCCC
Q 010712 237 DGSYGGATGN 246 (503)
Q Consensus 237 ~~~y~~~~~~ 246 (503)
.|-||||+.+
T Consensus 296 aGiyGMNf~~ 305 (339)
T 4ev6_A 296 TGIYGMNFSY 305 (339)
T ss_dssp HHHTTCCCSC
T ss_pred HhhccCcCCC
Confidence 5899999864
No 353
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=83.96 E-value=3.2 Score=44.50 Aligned_cols=45 Identities=9% Similarity=0.174 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 176 ELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 227 (503)
Q Consensus 176 EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELe 227 (503)
++++|.+|+++++.+++.+++. +.+-+....-+..|++.++.+..
T Consensus 455 e~~kl~~E~~~l~~ei~~l~~i-------L~~~~~~~~~i~~el~~i~~~yg 499 (514)
T 2inr_A 455 DIVALEGEHKELEALIKQLRHI-------LDNHDALLNVIKEELNEIKKKFK 499 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------hCCHHHHHHHHHHHHHHHHHHcC
Confidence 3444444444444444433333 33333333344555555555543
No 354
>2p01_A Alpha-2-macroglobulin receptor-associated protein; RAP, cell adhesion; NMR {Homo sapiens} PDB: 2p03_A
Probab=83.94 E-value=38 Score=34.03 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHH------------HHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712 174 LSELESLRQEYHHCRGTYEYEKKFYNDHL---ESLQ------------VMEKNYITMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 174 ~~EIe~L~qELq~lR~ele~ekk~~~el~---eqlq------------emEk~L~sm~rEIekLraELekle~el 233 (503)
..|++.++.||.+.+..|+.++=.-+++. +.++ ........|+..++++...|+++...|
T Consensus 237 ~~ELeSlK~EL~HfE~rL~KlrH~~~El~l~~~k~k~~e~~g~~~~~~~~~~k~~~leek~Kk~~rKV~Kl~~~L 311 (323)
T 2p01_A 237 DKELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKELGYTVKKHLQDL 311 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888777776665543333333 1111 113346789999999999999987765
No 355
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=83.85 E-value=3.8 Score=30.18 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHH
Q 010712 173 LLSELESLRQEYHHCRGTYEY 193 (503)
Q Consensus 173 l~~EIe~L~qELq~lR~ele~ 193 (503)
+..+++.|+.|-.+||+|++.
T Consensus 8 L~~QVe~Lk~ENshLrrEL~d 28 (54)
T 1deb_A 8 LLKQVEALKMENSNLRQELED 28 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHh
Confidence 444555555555555555443
No 356
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=83.85 E-value=5.4 Score=38.25 Aligned_cols=15 Identities=27% Similarity=0.284 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHhc
Q 010712 215 MATEVEKLRAELMNA 229 (503)
Q Consensus 215 m~rEIekLraELekl 229 (503)
.+.+++.++..|+++
T Consensus 117 a~a~l~~a~~~l~~~ 131 (277)
T 2f1m_A 117 AKAAVETARINLAYT 131 (277)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhcC
Confidence 334445555555554
No 357
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A {Helicobacter pylori}
Probab=83.73 E-value=44 Score=34.63 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=19.4
Q ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 49 EVMEQKIAS-------QHVEMQKLATENQRLAATHGTLRQELAAA 86 (503)
Q Consensus 49 ~~LEqeIe~-------~~~EIq~Le~enqrLa~e~~~LrqeLa~l 86 (503)
..||.++-. ...-|..++..+..|......+..-.+.+
T Consensus 299 ~~l~dk~~akgls~~e~nklikdfl~snkelv~k~~nfnkavaea 343 (569)
T 4dvz_A 299 RNLENKLTAKGLSLQEANKLIKDFLSSNKELAGKALNFNKAVAEA 343 (569)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHhcCCCHHHHHHHHHHHHhccHHHHHHHhhHHHHHHHh
Confidence 777776543 23334444555555555555554444433
No 358
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=83.66 E-value=1.4 Score=36.57 Aligned_cols=13 Identities=23% Similarity=0.406 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHh
Q 010712 216 ATEVEKLRAELMN 228 (503)
Q Consensus 216 ~rEIekLraELek 228 (503)
+.||..|+.+|+.
T Consensus 74 EeEI~rLr~eLe~ 86 (92)
T 3vp9_A 74 EEEIKHLKLGLEQ 86 (92)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555554
No 359
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=83.59 E-value=5.3 Score=31.98 Aligned_cols=24 Identities=8% Similarity=0.052 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 140 QNLVVAREELIAKVHQLTQDLQRA 163 (503)
Q Consensus 140 qqL~~erqeLe~qiq~L~~ELqrl 163 (503)
..+.....+|+..++.|...+..|
T Consensus 15 ~~~~~~~~~i~~~l~~l~~~v~~l 38 (94)
T 3fav_B 15 SAIQGNVTSIHSLLDEGKQSLTKL 38 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444433
No 360
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=83.58 E-value=5.3 Score=32.18 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712 174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (503)
Q Consensus 174 ~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~ 231 (503)
..+|..+.+.+..|..-+..+-..+.+.-+.+..++.++......+++-..+|.++.+
T Consensus 20 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~ 77 (83)
T 1sfc_B 20 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444455555555666667777777777777777777766544
No 361
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.55 E-value=12 Score=32.51 Aligned_cols=27 Identities=7% Similarity=0.065 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 48 PEVMEQKIASQHVEMQKLATENQRLAA 74 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le~enqrLa~ 74 (503)
...|-+.|....-.|......++++..
T Consensus 12 f~~l~~~is~~I~~In~~vs~l~r~v~ 38 (130)
T 2dnx_A 12 FSSIIQTCSGNIQRISQATAQIKNLMS 38 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555544444444444433
No 362
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=83.51 E-value=13 Score=29.47 Aligned_cols=24 Identities=0% Similarity=0.014 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 010712 207 VMEKNYITMATEVEKLRAELMNAP 230 (503)
Q Consensus 207 emEk~L~sm~rEIekLraELekle 230 (503)
.+.+.|..+...|.+.....+..+
T Consensus 64 ~~~~~L~~i~~~L~~~a~~y~~~d 87 (97)
T 2vs0_A 64 KFAQLLEEIKQQLNSTADAVQEQD 87 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444433
No 363
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=83.47 E-value=32 Score=32.87 Aligned_cols=50 Identities=2% Similarity=-0.032 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 010712 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGG 99 (503)
Q Consensus 50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~ 99 (503)
..-..|...+.+|..++..+.+|......+-..+.........+...|..
T Consensus 18 ~FR~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~ 67 (265)
T 2q12_A 18 QTRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKE 67 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777777777776666655555544444444444443
No 364
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=83.42 E-value=3.8 Score=41.98 Aligned_cols=10 Identities=40% Similarity=0.581 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 010712 111 LTEKIAKMEA 120 (503)
Q Consensus 111 L~eki~kLEa 120 (503)
|.+++..|+.
T Consensus 8 ~~~r~~el~~ 17 (354)
T 3d5a_X 8 LEEEYRELEA 17 (354)
T ss_dssp HTHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 365
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=83.25 E-value=11 Score=32.35 Aligned_cols=65 Identities=14% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 156 LTQDLQRAHTDVQQIPALLSE-LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 226 (503)
Q Consensus 156 L~~ELqrlk~elqqi~~l~~E-Ie~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraEL 226 (503)
|..||++++.+..++...-.+ +..|+.| ++++++.++++++. .+++++.+.....++++.+...|
T Consensus 37 L~~ELeRLr~~~d~~~K~HE~kklqLkse---~e~E~ae~k~KYD~---~lqe~ese~~~kkK~le~~~~kV 102 (115)
T 3vem_A 37 FLHELEKLRRESENSKKTFEEKKSILKAE---LERKMAEVQAEFRR---KFHEVEAEHNTRTTKIEKDKNLV 102 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
No 366
>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation, vacuolar type, hydrolase, ATP synthesis, ATP-binding, hydrogen ION transport; HET: ADP; 4.51A {Thermus thermophilus} PDB: 3a5d_G 3j0j_G*
Probab=83.20 E-value=8.8 Score=36.64 Aligned_cols=17 Identities=12% Similarity=0.253 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhhHHH
Q 010712 177 LESLRQEYHHCRGTYEY 193 (503)
Q Consensus 177 Ie~L~qELq~lR~ele~ 193 (503)
|..++..+.-++..|++
T Consensus 169 IP~le~tikyI~~~LdE 185 (223)
T 3a5c_G 169 IPGIRAQIRFIQQVLEQ 185 (223)
T ss_dssp HHHHTHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHhH
Confidence 44444444444444443
No 367
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=83.05 E-value=4 Score=45.48 Aligned_cols=45 Identities=11% Similarity=-0.012 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 176 ELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELM 227 (503)
Q Consensus 176 EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELe 227 (503)
|++++++|+++|+.+++++++.+.. -++.+.-+.+|+.+++.+..
T Consensus 403 e~~kl~~E~~eL~~~i~~l~~iL~~-------~~~l~~~i~~EL~~i~~kyg 447 (716)
T 1zvu_A 403 EEMKIRGEQSELEKERDQLQGILAS-------ERKMNNLLKKELQADAQAYG 447 (716)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-------HHHHHHHHHHHHHHHHHHhC
Confidence 4555555555555555544444433 33334444555555555543
No 368
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=83.01 E-value=4.9 Score=41.18 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhhhhc
Q 010712 82 ELAAAQHELQILHGQIG 98 (503)
Q Consensus 82 eLa~lq~EL~~L~~qL~ 98 (503)
.|+.+..++..|...+.
T Consensus 4 ~l~~~~~r~~el~~~~~ 20 (354)
T 3d5a_X 4 KLDRLEEEYRELEALLS 20 (354)
T ss_dssp HHHHHTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33444444444444443
No 369
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=82.90 E-value=5.6 Score=30.28 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 190 TYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (503)
Q Consensus 190 ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELek 228 (503)
.+...+.++..+.+-...+.++|..|.++|.+|..|-..
T Consensus 21 ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~ 59 (63)
T 2w6a_A 21 ALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQ 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhh
Confidence 333333334444444444444555555555555555433
No 370
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=82.85 E-value=1 Score=28.39 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 62 MQKLATENQRLAATHGTLRQELAA 85 (503)
Q Consensus 62 Iq~Le~enqrLa~e~~~LrqeLa~ 85 (503)
|++|..+|.+|..++..|+-++++
T Consensus 2 irrlkqknarlkqeiaaleyeiaa 25 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAA 25 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHH
Confidence 445555565555555555444443
No 371
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=82.62 E-value=4.6 Score=36.43 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 128 VKLEFQKSKTEAQNLVVAREELIAKVHQL 156 (503)
Q Consensus 128 Lk~ELeqLraELqqL~~erqeLe~qiq~L 156 (503)
|..|+..+..++++...+...+..+++.+
T Consensus 97 Le~E~~~~~~el~~~v~eae~ll~~v~~~ 125 (151)
T 1yke_B 97 LQKKLVEVEDEKIEAIKKKEKLLRHVDSL 125 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444433
No 372
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=82.61 E-value=37 Score=32.94 Aligned_cols=168 Identities=12% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 010712 63 QKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNL 142 (503)
Q Consensus 63 q~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL 142 (503)
..|-.-+.++...+..++.+|...-+.+. ..-|..++...+...+.+....+..+.|.+. ...+|+....++.++
T Consensus 73 ~elG~~L~~i~~~~r~ie~~l~~~~~~~~--~~li~pL~~kie~d~K~v~~~~K~~~~e~k~---~~~~l~K~~~e~~kl 147 (253)
T 2ykt_A 73 KELGDVLFQMAEVHRQIQNQLEEMLKSFH--NELLTQLEQKVELDSRYLSAALKKYQTEQRS---KGDALDKCQAELKKL 147 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---hHhHHHHHHHHHHHH
Q ss_pred HHHH----------HHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 010712 143 VVAR----------EELIAKVHQLTQDLQRAHTDVQQI--PALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEK 210 (503)
Q Consensus 143 ~~er----------qeLe~qiq~L~~ELqrlk~elqqi--~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk 210 (503)
+.+. ..+...++.+......++.-+.+. ..+..|-...--=++.+..-++.+-.........+++...
T Consensus 148 ~KK~k~gk~~~~~~~~~~~~~e~v~~~~~~le~~~~~~lr~aL~EERrRycflv~~~~~v~~~~~~~h~~~~~~L~~~l~ 227 (253)
T 2ykt_A 148 RKKSQGSKNPQKYSDKELQYIDAISNKQGELENYVSDGYKTALTEERRRFCFLVEKQCAVAKNSAAYHSKGKELLAQKLP 227 (253)
T ss_dssp HHC------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q ss_pred HHHHHHHHHHHHHHHHHhccccccc
Q 010712 211 NYITMATEVEKLRAELMNAPNVDRR 235 (503)
Q Consensus 211 ~L~sm~rEIekLraELekle~el~~ 235 (503)
.+..+..+-.+|=..++.+...+++
T Consensus 228 ~w~~l~~~~~~lP~~se~lI~~~~~ 252 (253)
T 2ykt_A 228 LWQQACADPSKIPERAVQLMQQVAS 252 (253)
T ss_dssp HHHHTTCCCC---------------
T ss_pred HHHHHhcChhcCChHHHHHHHHhhc
No 373
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=82.49 E-value=3.7 Score=37.53 Aligned_cols=24 Identities=8% Similarity=0.093 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHhhhhccchH
Q 010712 79 LRQELAAAQHELQILHGQIGGMKS 102 (503)
Q Consensus 79 LrqeLa~lq~EL~~L~~qL~~lka 102 (503)
|.+.++.+...+..++..|.=+..
T Consensus 64 l~~~ld~l~~~~~~l~~~L~P~t~ 87 (165)
T 1gs9_A 64 MDETMKELKAYKSELEEQLTPVAE 87 (165)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCS
T ss_pred HHHHHHHHHHHHHHHHHhccchHH
Confidence 555666667777777777655443
No 374
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=82.39 E-value=3.3 Score=34.41 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 010712 172 ALLSELESLRQEYHHCRGTYEYEKKFY 198 (503)
Q Consensus 172 ~l~~EIe~L~qELq~lR~ele~ekk~~ 198 (503)
.++.+++.|..||+.+..+|...+..+
T Consensus 53 KL~Rk~DKl~~ele~l~~~l~~~k~~F 79 (93)
T 3sjb_C 53 KNNRKLDSLDKEINNLKDEIQSENKAF 79 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333
No 375
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=82.35 E-value=4.9 Score=30.09 Aligned_cols=31 Identities=19% Similarity=0.134 Sum_probs=11.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 010712 182 QEYHHCRGTYEYEKKFYNDHLESLQVMEKNY 212 (503)
Q Consensus 182 qELq~lR~ele~ekk~~~el~eqlqemEk~L 212 (503)
.|++.|+++.+.+++.+++.....++||+.+
T Consensus 17 DqV~eL~qe~k~m~k~lEeEqkARk~LE~~v 47 (56)
T 2w6b_A 17 DEVQELRQDNKKMKKSLEEEQRARKDLEKLV 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333433333334444433
No 376
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=82.33 E-value=30 Score=31.69 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 139 AQNLVVAREELIAKVHQLTQDLQR 162 (503)
Q Consensus 139 LqqL~~erqeLe~qiq~L~~ELqr 162 (503)
+.......+.++.++..++.+|..
T Consensus 119 y~~Ads~~~~lekKvn~aq~kLs~ 142 (201)
T 3u0c_A 119 LKNADSKIKDLENKINQIQTRLSE 142 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhc
Confidence 333334444444444444444443
No 377
>1r8i_A TRAC; VIRB5, helical bundle, structural protein; 3.00A {Escherichia coli} SCOP: a.8.7.1
Probab=82.28 E-value=1.5 Score=41.61 Aligned_cols=25 Identities=12% Similarity=0.246 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 010712 71 RLAATHGTLRQELAAAQHELQILHG 95 (503)
Q Consensus 71 rLa~e~~~LrqeLa~lq~EL~~L~~ 95 (503)
++..+++.++++|+.+++.+..+..
T Consensus 19 q~~~Ql~~~k~Ql~q~k~qy~sltG 43 (213)
T 1r8i_A 19 QMAQQLEQLKSQLETQKNMYESMAK 43 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4444444455555555555444443
No 378
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=82.10 E-value=13 Score=28.57 Aligned_cols=50 Identities=14% Similarity=0.102 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712 180 LRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229 (503)
Q Consensus 180 L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekl 229 (503)
+.+.+..|..-+..+-....+.-+.+..++.++......+++-..+|.++
T Consensus 17 Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 66 (68)
T 1n7s_B 17 LENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444445555566666666666666666666554
No 379
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=81.87 E-value=35 Score=32.15 Aligned_cols=24 Identities=13% Similarity=0.048 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc
Q 010712 75 THGTLRQELAAAQHELQILHGQIG 98 (503)
Q Consensus 75 e~~~LrqeLa~lq~EL~~L~~qL~ 98 (503)
+...+.+++..++++-..+..+|.
T Consensus 57 ~~~~~~~~I~~lE~~aD~i~~~i~ 80 (227)
T 3l39_A 57 ERADYYKQIKDMEREGDRLTHLIF 80 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555543
No 380
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=81.76 E-value=5.2 Score=30.31 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010712 173 LLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 230 (503)
Q Consensus 173 l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle 230 (503)
+...|..+..++.+++.+++ ....+.+++-+-...+..||..-+.-|+--+
T Consensus 5 ~q~~i~~le~el~~~r~e~~-------~q~~eYq~LlniK~~Le~EIatYRkLLEgEe 55 (59)
T 1gk6_A 5 LEDKVEELLSKNYHLENEVA-------RLKKLVGDLLNVKMALDIEIATYRKLLEGEE 55 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHccCc
Confidence 34445555555555555543 3334445555566677888888887776543
No 381
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=81.52 E-value=18 Score=28.57 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010712 144 VAREELIAKVHQLTQDLQR 162 (503)
Q Consensus 144 ~erqeLe~qiq~L~~ELqr 162 (503)
....+|+..+..|...|..
T Consensus 23 ~~~~~i~~~l~~L~~~~~~ 41 (93)
T 4ioe_A 23 NAAGEAQSQINRLEGDINS 41 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333444333333
No 382
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=81.49 E-value=9 Score=43.03 Aligned_cols=39 Identities=10% Similarity=-0.096 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 190 TYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (503)
Q Consensus 190 ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELek 228 (503)
|++.+++++.+++.-+...+....-+..|+.+++.+..+
T Consensus 704 E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~~~~~yg~ 742 (767)
T 2xkj_E 704 EQDELSAKAAIIREQLENPESLKNLIISELKEDAKKFGD 742 (767)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC
Confidence 333333334444443343333444455555655555543
No 383
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=81.45 E-value=10 Score=33.39 Aligned_cols=7 Identities=14% Similarity=0.368 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 010712 87 QHELQIL 93 (503)
Q Consensus 87 q~EL~~L 93 (503)
.++|+.|
T Consensus 70 ~kqIe~L 76 (132)
T 1ykh_B 70 TRQINKL 76 (132)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 384
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=81.44 E-value=12 Score=33.71 Aligned_cols=14 Identities=29% Similarity=0.582 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 010712 109 RNLTEKIAKMEAEL 122 (503)
Q Consensus 109 ~eL~eki~kLEaEL 122 (503)
++|.+++..++.|+
T Consensus 32 ~~l~~~i~q~d~el 45 (150)
T 4dci_A 32 REISNGIANADQQL 45 (150)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 385
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=81.44 E-value=32 Score=31.47 Aligned_cols=43 Identities=9% Similarity=0.175 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010712 128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI 170 (503)
Q Consensus 128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi 170 (503)
+..|.+.+-..+++...........++.++.++..++.++.++
T Consensus 101 aL~eAQ~AtD~y~~Ainny~~Ads~~~~lekKvn~aq~kLs~L 143 (201)
T 3u0c_A 101 LLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTRLSEL 143 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3334444444555555555666666666666666666666554
No 386
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=81.39 E-value=12 Score=28.83 Aligned_cols=39 Identities=18% Similarity=0.219 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712 191 YEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNA 229 (503)
Q Consensus 191 le~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekl 229 (503)
+..+-....+.-+.+..++.++......+++-..+|.++
T Consensus 26 F~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 64 (69)
T 3b5n_B 26 FNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKA 64 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444455555556666666666655555554
No 387
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=81.39 E-value=39 Score=32.37 Aligned_cols=19 Identities=11% Similarity=0.323 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhhHHHHH
Q 010712 177 LESLRQEYHHCRGTYEYEK 195 (503)
Q Consensus 177 Ie~L~qELq~lR~ele~ek 195 (503)
|..++.|++.++.+++.+.
T Consensus 167 l~kae~el~~Ak~~Ye~lN 185 (243)
T 4a3a_A 167 ISKAEEEFQKAQKVFEEFN 185 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 388
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=81.30 E-value=23 Score=29.73 Aligned_cols=23 Identities=9% Similarity=0.127 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010712 205 LQVMEKNYITMATEVEKLRAELM 227 (503)
Q Consensus 205 lqemEk~L~sm~rEIekLraELe 227 (503)
+++.+.-++.....|.+++.-.+
T Consensus 76 IKa~kvL~~rns~DI~~ire~fq 98 (101)
T 4aj5_1 76 IKATKVLMEKNSMDIMKIREYFQ 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Confidence 33333334444555555555443
No 389
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=81.29 E-value=18 Score=40.84 Aligned_cols=12 Identities=0% Similarity=0.149 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHh
Q 010712 217 TEVEKLRAELMN 228 (503)
Q Consensus 217 rEIekLraELek 228 (503)
..++.+...|..
T Consensus 565 ~a~~~l~~~i~~ 576 (854)
T 1qvr_A 565 EAIRAVADAIRR 576 (854)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 390
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=81.27 E-value=23 Score=31.39 Aligned_cols=100 Identities=17% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH------Hhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--------
Q 010712 74 ATHGTLRQELAAAQHELQI------LHGQIGG-MKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTE-------- 138 (503)
Q Consensus 74 ~e~~~LrqeLa~lq~EL~~------L~~qL~~-lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraE-------- 138 (503)
++++.|+..|..+..+|+. --..|.. ++--.+.+++-+..+....+.++......-..|...+.-
T Consensus 6 ~Ele~lr~aL~~AE~eLe~~~~~w~~p~~Lq~wLq~T~E~E~q~~~~kk~~Aekql~~Ake~~eKlkKKrsSv~gs~~~a 85 (136)
T 3ter_A 6 TEMENLRVQLEEAERRLEANSNGSQAPLALQPLLRRTCENEMAFLEKQRQDCFKEMKEAIEMVDRLQKKQGSVLSSLKLA 85 (136)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHhHHHHHHHHHccccHHHHHHHHHHHHHHHHHhhhchheeeeee
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 010712 139 ------AQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPAL 173 (503)
Q Consensus 139 ------LqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l 173 (503)
++++...+.++...+.+++.++..-....++|+.+
T Consensus 86 Hs~~sslD~vD~~Il~Ak~aL~evt~~l~Er~~RW~qIE~L 126 (136)
T 3ter_A 86 TGAASTSDQVDSKIFALKSRMEKIHTLTRETQERWLQIESL 126 (136)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 391
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=81.00 E-value=6.6 Score=34.11 Aligned_cols=10 Identities=20% Similarity=-0.050 Sum_probs=4.2
Q ss_pred HHhccccccc
Q 010712 226 LMNAPNVDRR 235 (503)
Q Consensus 226 Lekle~el~~ 235 (503)
+.+.....|.
T Consensus 55 ~~~~~~~~W~ 64 (125)
T 1joc_A 55 HTQALNRKWA 64 (125)
T ss_dssp HHHHHHCCCC
T ss_pred ccccCCCccc
Confidence 3333334564
No 392
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=80.96 E-value=26 Score=33.22 Aligned_cols=11 Identities=0% Similarity=-0.028 Sum_probs=4.5
Q ss_pred HHHHHHhhhhc
Q 010712 88 HELQILHGQIG 98 (503)
Q Consensus 88 ~EL~~L~~qL~ 98 (503)
.+|-..+.+|.
T Consensus 46 ~~ipdA~~rL~ 56 (214)
T 1kmi_Z 46 EAIPDARDRLY 56 (214)
T ss_dssp TTHHHHHHHTT
T ss_pred HHhhHHHHHHH
Confidence 33444444443
No 393
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=80.85 E-value=1.4 Score=28.69 Aligned_cols=28 Identities=32% Similarity=0.453 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccchH
Q 010712 75 THGTLRQELAAAQHELQILHGQIGGMKS 102 (503)
Q Consensus 75 e~~~LrqeLa~lq~EL~~L~~qL~~lka 102 (503)
++..|++++++++.||..|+-+|..++.
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 394
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=80.67 E-value=28 Score=31.66 Aligned_cols=13 Identities=23% Similarity=0.143 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 010712 171 PALLSELESLRQE 183 (503)
Q Consensus 171 ~~l~~EIe~L~qE 183 (503)
++++..+.-.-.+
T Consensus 131 EelR~kl~P~~ee 143 (165)
T 1gs9_A 131 EELRVRLASHLRK 143 (165)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444333333
No 395
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=80.42 E-value=3.7 Score=28.06 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 54 KIASQHVEMQKLATENQRLAATHGTLRQELA 84 (503)
Q Consensus 54 eIe~~~~EIq~Le~enqrLa~e~~~LrqeLa 84 (503)
++.++++++..|..++..|+.++..|+.-|.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 3455566666666666666666666654443
No 396
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=80.37 E-value=17 Score=34.02 Aligned_cols=150 Identities=11% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 010712 86 AQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK-TAEPVKLEFQKSKTEAQNLVVAR---EELIAKVHQLTQDLQ 161 (503)
Q Consensus 86 lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~-~le~Lk~ELeqLraELqqL~~er---qeLe~qiq~L~~ELq 161 (503)
...+|..++.++..+....+..+....+-+...+.++. ++.....+++.++.++...-..+ ++....--.....+-
T Consensus 5 ~~~~L~~l~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~V~~~d~~iD~l~~~I~~~~~~lla~~qp~a~dlr~i~~~l 84 (235)
T 1sum_B 5 LNEKVEEFKKGVLKAGWFIEKMFRNSISSLVERNESLAREVIADEEVVDQMEVEIQEKAMEVLGLFSPIGKPLLTVTAGI 84 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHH-----HHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 010712 162 RAHTDVQQIPALLSELESLRQEYHH-----CRGTYEYEKKFYNDHLES-LQVMEKNYITMATEVEKLRAELMNAPNVDRR 235 (503)
Q Consensus 162 rlk~elqqi~~l~~EIe~L~qELq~-----lR~ele~ekk~~~el~eq-lqemEk~L~sm~rEIekLraELekle~el~~ 235 (503)
++..++++|.+.-..|.++-..+.. ...++...-+...+..+. +..+.+.-..+..++.++..+++++..++++
T Consensus 85 ~i~~dlERIgD~a~~Ia~~~~~~~~~~~~~~~~~l~~m~~~v~~~l~~a~~a~~~~d~~~A~~v~~~d~~iD~l~~~l~~ 164 (235)
T 1sum_B 85 RVAELIENIADKCHDIAKNVLELMEEPPLKPLEDIPAMANQTSEMLKFALRMFADVNVEKSFEVCRMDSKVDDLYEKVRE 164 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCCCSCCSHHHHHHHHHHHHHHHHHHHHHSCCHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
No 397
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=80.30 E-value=17 Score=34.33 Aligned_cols=70 Identities=13% Similarity=0.195 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHH
Q 010712 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAE 121 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaE 121 (503)
...-|.+|++++.+|..-+....+-...+..++-.|...+.+|..|+.++ ..++.++...+.+|..|+.+
T Consensus 79 L~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v----~~ld~~vt~~et~Isal~~D 148 (242)
T 3c9i_A 79 LADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNV----SALDGRVTTAENNISALQAD 148 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred eecchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhh----hhhcccccccccchhhhhhh
No 398
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=80.29 E-value=13 Score=29.24 Aligned_cols=46 Identities=13% Similarity=0.065 Sum_probs=24.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712 186 HCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (503)
Q Consensus 186 ~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~ 231 (503)
.|..-+..+-....+.-+.+..++.++......+++-..+|.++.+
T Consensus 21 eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (77)
T 1jth_B 21 ELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 66 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444555556666666666666666666665543
No 399
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=80.26 E-value=14 Score=28.31 Aligned_cols=54 Identities=11% Similarity=0.190 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010712 177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 230 (503)
Q Consensus 177 Ie~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle 230 (503)
|..+.+.+..|..-+..+-....+.-+.+..++.++......+++-..+|.++.
T Consensus 11 i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 64 (65)
T 1gl2_B 11 IRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAA 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444444444444444444555556666667777777777777777766653
No 400
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=80.25 E-value=13 Score=34.98 Aligned_cols=155 Identities=10% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH-HHhhhhccchHHHHHHHHHHHHHHHHHH
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAAT--------HGTLRQELAAAQHELQ-ILHGQIGGMKSERELQMRNLTEKIAKME 119 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e--------~~~LrqeLa~lq~EL~-~L~~qL~~lkae~E~el~eL~eki~kLE 119 (503)
...++-++.+.. ..|..++..+..+ +..|+++|.-...++. .+....+.++..+...+.++..++.-+-
T Consensus 23 ~~a~~~v~~l~~--sel~qqL~~~l~e~~~~l~~~~~~l~~~l~p~~~e~~~~l~~~~~~lr~~l~kd~ee~r~~l~py~ 100 (216)
T 2lem_A 23 DSGRDYVSQFES--SSLGQQLNLNLLENWDTLGSTVSQLQERLGPLTRDFWDNLEKETDWVRQEMNKDLEEVKQKVQPYL 100 (216)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHTTTTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHhh--hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhccHHHHHHhhhHHH
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHhhhh-----hHHHHHHHHHHHH
Q 010712 120 AELKTAEPVKLEFQKSKTEAQNLVVAREELIA------------KVHQLTQDLQRAHTDVQQ-----IPALLSELESLRQ 182 (503)
Q Consensus 120 aEL~~le~Lk~ELeqLraELqqL~~erqeLe~------------qiq~L~~ELqrlk~elqq-----i~~l~~EIe~L~q 182 (503)
.++.. .+...++.++..|.-...++.+-.. -.++|...|.....+++. +.+++.+|+.--.
T Consensus 101 ~el~~--~~~~~~e~lr~~L~Py~~el~~~~~~~~e~Lr~~L~p~~e~lr~kl~~~~e~lk~~l~P~~ee~~~kl~~~le 178 (216)
T 2lem_A 101 DEFQK--KWKEDVELYRQKASPQGAELQESARQKLQELQGRLSPVAEEFRDRMRTHVDSLRTQLAPHSEQMRESLAQRLA 178 (216)
T ss_dssp CHHHH--HHHHHHHHHHHHTSCHHHHHHHHHHCSCCSSCCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHH
Q ss_pred HHH----------HHHhhHHHHHHHHHHHHHHHHH
Q 010712 183 EYH----------HCRGTYEYEKKFYNDHLESLQV 207 (503)
Q Consensus 183 ELq----------~lR~ele~ekk~~~el~eqlqe 207 (503)
+|. ++...++.++..+.-..+.+++
T Consensus 179 eL~~~p~~~e~~~ki~~~~e~Lr~~l~P~~edlk~ 213 (216)
T 2lem_A 179 ELKSNPTLNEYHSSAKSHLKSLGEKARPALEDLRH 213 (216)
T ss_dssp HHHHCCCCCCCCCCSSSHHHHHHHTSCTTTHHHHH
T ss_pred HHhCCcchHHHHHHHHHHHHHHHHHhhhhHHHHHh
No 401
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=80.22 E-value=2.9 Score=48.52 Aligned_cols=148 Identities=10% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 010712 54 KIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQ 133 (503)
Q Consensus 54 eIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELe 133 (503)
.+..+...-..|+...++....+...-..++.+++..++...........++.....|.. ...-..+..++.+.++.+
T Consensus 844 ~~~~L~~~W~~L~~ae~er~~~L~~el~RlerL~~la~kf~~ka~~~e~Wl~eke~~l~s--~d~g~dl~~vqallkKhe 921 (995)
T 2ycu_A 844 TPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGS--NETGDSITAVQAKLKNLE 921 (995)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGGCCCCCCCHHHHHHHHHHH--HTHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cccccCHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhh-hHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 010712 134 KSKTEAQNLVVARE-ELIAKVHQLTQDLQRAHTDVQQ-IPAL-LSELESLRQEYHHCRGTYEYEKKFYNDHLE 203 (503)
Q Consensus 134 qLraELqqL~~erq-eLe~qiq~L~~ELqrlk~elqq-i~~l-~~EIe~L~qELq~lR~ele~ekk~~~el~e 203 (503)
.+.++|........ +|....++|.++-.....++.+ ...+ ..+++.|+.-+++-++.|+...+..+.+.+
T Consensus 922 a~e~dl~a~e~ri~~~l~~~a~~L~~~~y~~~~~I~~R~~~l~~~~W~~L~~~a~~Rr~~L~~~~~~~q~~~~ 994 (995)
T 2ycu_A 922 AFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIED 994 (995)
T ss_dssp HHHHHHHHTTTCSCSSHHHHHHHHTTTHHHHHHHHHHHHTHHHHHHHHHHHSSSCCCC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 402
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=80.19 E-value=52 Score=34.31 Aligned_cols=113 Identities=9% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHH
Q 010712 118 MEAELKTAEPVKLEFQKSKTEAQNLVVAREE----LIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEY 193 (503)
Q Consensus 118 LEaEL~~le~Lk~ELeqLraELqqL~~erqe----Le~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ 193 (503)
|..+++.-.......+.....|.++.....+ |...++.+-.-++.+...=.....-..-|+..+.=.+++....+.
T Consensus 7 l~~q~r~~~s~~~~~~~~~~~l~~le~~~~~~~~gl~~~l~~ff~alq~la~~P~~~~~R~~vl~~a~~La~~~n~~~~~ 86 (463)
T 2d4y_A 7 ITNQLRGAQNQSSGLTTRYEQMSKIDNLLADKSSSLSGSLQSFFTSLQTLVSNAEDPAARQALIGKAEGLVNQFKTTDQY 86 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010712 194 EKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAP 230 (503)
Q Consensus 194 ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle 230 (503)
++.....+..+++..-+++..+.++|.+|..+|.+.+
T Consensus 87 L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~~~~ 123 (463)
T 2d4y_A 87 LRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRMT 123 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 403
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=80.09 E-value=31 Score=32.78 Aligned_cols=89 Identities=13% Similarity=0.152 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHH----
Q 010712 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK---- 123 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~---- 123 (503)
+..|+.+|+.+..++..|..+..|+.++++.+++....-..++...-.+- -+++|..-++.|+.-+.
T Consensus 61 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~---------~~~~LLpVlDnlerAl~~~~~ 131 (213)
T 4ani_A 61 LAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQS---------LASDLLPVLDNFERALKIETD 131 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH---------HHHHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHhHHHHHHHHHHHhccc
Q ss_pred --HHhHHHHHHHHHHHHHHHHHHH
Q 010712 124 --TAEPVKLEFQKSKTEAQNLVVA 145 (503)
Q Consensus 124 --~le~Lk~ELeqLraELqqL~~e 145 (503)
.+..|..=++.+..+|.++...
T Consensus 132 ~~~~~~l~eGvemi~k~l~~~L~k 155 (213)
T 4ani_A 132 NEQAKSILQGMEMVYRSLVDALKK 155 (213)
T ss_dssp CSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHH
No 404
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=80.07 E-value=18 Score=40.78 Aligned_cols=171 Identities=12% Similarity=0.084 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Q 010712 45 MPPPEVMEQKIASQHVEM---------QKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKI 115 (503)
Q Consensus 45 ~p~p~~LEqeIe~~~~EI---------q~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki 115 (503)
+|....+.+-|..+.... ........++......-+.-...+..-+......+.-.....-.++.+|..++
T Consensus 331 ~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~~~~~~~p~~l~~~~~~~ 410 (854)
T 1qvr_A 331 EPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALESAPEEIDALERKK 410 (854)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHhhccCCchhHHHHHHHH
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHH
Q 010712 116 AKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEK 195 (503)
Q Consensus 116 ~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ek 195 (503)
..++.++..+..-+.. .-...+.++..+...+..+++.+...-+..+..++++..++.+++.++.+++..... ....
T Consensus 411 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 487 (854)
T 1qvr_A 411 LQLEIEREALKKEKDP--DSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQ-YDLN 487 (854)
T ss_dssp HHHHHHHHHHSSCSSH--HHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-TCHH
T ss_pred HHHHHHHHHHHhcccc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhc-ccHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010712 196 KFYNDHLESLQVMEKNYITMATE 218 (503)
Q Consensus 196 k~~~el~eqlqemEk~L~sm~rE 218 (503)
+..+-....+.++++++..++..
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~ 510 (854)
T 1qvr_A 488 RAAELRYGELPKLEAEVEALSEK 510 (854)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHhh
No 405
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=79.98 E-value=0.86 Score=28.68 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 61 EMQKLATENQRLAATHGTLRQELAAAQH 88 (503)
Q Consensus 61 EIq~Le~enqrLa~e~~~LrqeLa~lq~ 88 (503)
||..|+-+|..|+..+..|+++++.+++
T Consensus 1 eidalefendaleqkiaalkqkiaslkq 28 (28)
T 3ra3_A 1 EIDALEFENDALEQKIAALKQKIASLKQ 28 (28)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcchHHhccHHHHHHHHHHHHHHHHhcC
No 406
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=79.96 E-value=2.7 Score=28.72 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 53 QKIASQHVEMQKLATENQRLAATHGTLRQELAAAQ 87 (503)
Q Consensus 53 qeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq 87 (503)
+++.++++++..|..++..|+.++..|+..|....
T Consensus 1 eRMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~~e 35 (36)
T 1kd8_A 1 XEVKQLEAEVEEIESEVWHLENEVARLEKENAECE 35 (36)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcccc
No 407
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=79.86 E-value=42 Score=31.82 Aligned_cols=170 Identities=11% Similarity=0.079 Sum_probs=0.0
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------HHHHHHHHHH--
Q 010712 43 DMMPPPEVMEQKIASQHVEMQKLATENQRLAA------------------------------------THGTLRQELA-- 84 (503)
Q Consensus 43 ~~~p~p~~LEqeIe~~~~EIq~Le~enqrLa~------------------------------------e~~~LrqeLa-- 84 (503)
++......||++++....-+.+|......... .+...-++|.
T Consensus 12 el~~d~~~lE~r~d~~~~~~~~l~k~~~~yl~pn~~~r~~~~~~~~i~k~~~~~k~~~~~~~~~~L~~~m~~~~~~l~~d 91 (240)
T 2z0v_A 12 KLDDEFLDMERKIDVTNKVVAEILSKTTEYLQPNPAYRAKLGMLNTVSKIRGQVKTTGYPQTEGLLGDCMLKYGKELGED 91 (240)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHTCCCCCCSSCCCCCCSSCCHHHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHhhcCCC
Q ss_pred ----HHHHHHHHHhhhhccchHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Q 010712 85 ----AAQHELQILHGQIGGMKSERELQMRN--LTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVA-----REELIAKV 153 (503)
Q Consensus 85 ----~lq~EL~~L~~qL~~lkae~E~el~e--L~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~e-----rqeLe~qi 153 (503)
.+=..+.....+|...+.+.+..++. |.--..-++.++..+...++.++..+.+++.++.. ..+|+...
T Consensus 92 s~~g~aL~~~g~a~~~ia~~~~~~~~~v~~~~l~pL~~~l~~d~k~i~~~rKkle~~rLd~D~ak~k~~k~~eeEl~~A~ 171 (240)
T 2z0v_A 92 STFGNALIEVGESMKLMAEVKDSLDINVKQTFIDPLQLLQDKDLKEIGHHLKKLEGRRLDYDYKKKRVGKIPDEEVRQAV 171 (240)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTTTSSCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 154 HQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYIT 214 (503)
Q Consensus 154 q~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~s 214 (503)
+++....+.+...+..+.+. +++-+..=..=++..+++.++..+.+..-...+...+..
T Consensus 172 ~~fe~~~e~~~~~m~~~~~~--~~e~l~~l~~~v~aQl~y~~~~~e~L~~l~~~l~~~~~~ 230 (240)
T 2z0v_A 172 EKFEESKELAERSMFNFLEN--DVEQVSQLAVFIEAALDYHRQSTEILQELQSKLQMRISA 230 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHS--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 408
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=79.67 E-value=37 Score=32.23 Aligned_cols=88 Identities=10% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHh------hHHHHH
Q 010712 124 TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQ--IPALLSELESLRQEYHHCRG------TYEYEK 195 (503)
Q Consensus 124 ~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqq--i~~l~~EIe~L~qELq~lR~------ele~ek 195 (503)
.++.|..+|..++.++.++......+.++++.++....+-+.++.+ +..+..+|-.+-..|+++.. .++.+.
T Consensus 60 e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~~~~~~~~~~~l~ 139 (213)
T 4ani_A 60 ELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERALKIETDNEQAKSIL 139 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCCSCCSTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccccHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q 010712 196 KFYNDHLESLQVMEKN 211 (503)
Q Consensus 196 k~~~el~eqlqemEk~ 211 (503)
+.+.-+.+++..+-++
T Consensus 140 eGvemi~k~l~~~L~k 155 (213)
T 4ani_A 140 QGMEMVYRSLVDALKK 155 (213)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
No 409
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=79.53 E-value=9.6 Score=31.00 Aligned_cols=84 Identities=7% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 010712 132 FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI---------PALLSELESLRQEYHHCRGTYEYEKKFYNDHL 202 (503)
Q Consensus 132 LeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi---------~~l~~EIe~L~qELq~lR~ele~ekk~~~el~ 202 (503)
+.+++-+...+.....++.....+|...|..++..++.| ........++.....++...|+.+...+....
T Consensus 2 M~~i~v~~~~l~~~A~~~~~~~~~l~~~l~~l~~~~~~L~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~~i~~~l~~~a 81 (101)
T 3fav_A 2 MAEMKTDAATLAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEISTNIRQAG 81 (101)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q 010712 203 ESLQVMEKNYITM 215 (503)
Q Consensus 203 eqlqemEk~L~sm 215 (503)
..+.+.+.....+
T Consensus 82 ~~y~~~d~~~a~~ 94 (101)
T 3fav_A 82 VQYSRADEEQQQA 94 (101)
T ss_dssp HHHC---------
T ss_pred HHHHHHHHHHHHH
No 410
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=79.53 E-value=13 Score=31.16 Aligned_cols=57 Identities=18% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 010712 119 EAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLS 175 (503)
Q Consensus 119 EaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~ 175 (503)
.+-+.+.-.|.+.++.+..+-..++........+|.+|..+|.+|+.+.+.+..-..
T Consensus 33 qELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 33 QELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH
No 411
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=79.51 E-value=12 Score=27.90 Aligned_cols=49 Identities=16% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 171 PALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEV 219 (503)
Q Consensus 171 ~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEI 219 (503)
..+..-+=+|+.|++.|+++.+.+++.+++.....++||+.+-.+-+..
T Consensus 6 KSlVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k~~ 54 (56)
T 2w6b_A 6 KSLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNM 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 412
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=79.47 E-value=10 Score=30.86 Aligned_cols=57 Identities=11% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712 175 SELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (503)
Q Consensus 175 ~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~ 231 (503)
...+..+.+.=--+.+.+.++++...+.+++....++|..++.+|++++..|.+|++
T Consensus 23 gKrEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 23 GKREQAEEERYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 413
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=79.42 E-value=29 Score=30.93 Aligned_cols=100 Identities=21% Similarity=0.236 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH--------HHHhhhhccchH
Q 010712 32 RPPMPGAFPPFDMMPPPEVMEQKIASQHVEMQKLATEN-QRLAATHGTLRQELAAAQHEL--------QILHGQIGGMKS 102 (503)
Q Consensus 32 ~p~~~~~~~p~~~~p~p~~LEqeIe~~~~EIq~Le~en-qrLa~e~~~LrqeLa~lq~EL--------~~L~~qL~~lka 102 (503)
.|| .-+.+|-.--+....++.+|+.....-+.++.+. ..|++..+..++-|.....+. +.|...++..+.
T Consensus 30 ~~~-~~~s~P~~k~~SleEIqkKLeAAEERRks~Ea~~lk~laekrehe~EvlqKa~Een~~F~k~aeEkL~~KME~~kE 108 (143)
T 3ryc_E 30 VPE-FNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKE 108 (143)
T ss_dssp SCC-------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHhHHHHHH
Q 010712 103 ERELQMRNLTEKIA---KMEAELKTAEPVKLEF 132 (503)
Q Consensus 103 e~E~el~eL~eki~---kLEaEL~~le~Lk~EL 132 (503)
..+..+..|.+++. +.-.++++...++.++
T Consensus 109 nReA~laal~erLkek~kha~eVrr~Ke~~~~~ 141 (143)
T 3ryc_E 109 NREAHLAAMLERLQEKDKHAEEVRKNKELKEEA 141 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
No 414
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=79.33 E-value=18 Score=31.06 Aligned_cols=71 Identities=17% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 010712 58 QHVEMQKLATENQRLAATHGTLRQELA-AAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPV 128 (503)
Q Consensus 58 ~~~EIq~Le~enqrLa~e~~~LrqeLa-~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~L 128 (503)
+..|+.+|..+...+...|+..+.+|. ++++|++.++...+.+..+.+.+.......++.+...+-..+.|
T Consensus 37 L~~ELeRLr~~~d~~~K~HE~kklqLkse~e~E~ae~k~KYD~~lqe~ese~~~kkK~le~~~~kV~mNk~L 108 (115)
T 3vem_A 37 FLHELEKLRRESENSKKTFEEKKSILKAELERKMAEVQAEFRRKFHEVEAEHNTRTTKIEKDKNLVIMNKLL 108 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 415
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=79.28 E-value=57 Score=32.99 Aligned_cols=179 Identities=10% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAAT-HGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEP 127 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e-~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~ 127 (503)
+.+..-|..++..+..|.....++... ...++.+...+-..+..|-..+.-...+....+.....++......+..+..
T Consensus 171 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~L~~al~~l~~~~~~i~~l~~ 250 (366)
T 3dyt_A 171 EAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVA 250 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 010712 128 VKLE-----FQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHL 202 (503)
Q Consensus 128 Lk~E-----LeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~ 202 (503)
...+ +.+.-.+...+.....++-...........+....+.+......++++++++.+.+-..+..+-..+. .
T Consensus 251 ~qa~~d~~~l~E~L~~Y~~~l~avKd~l~~r~~aL~k~~e~~kl~~~~K~~~~~~~~~~~r~e~is~~~~~El~rF~--~ 328 (366)
T 3dyt_A 251 EQPKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKITLQDKQNMVKRVSIMSYALQAEMNHFH--S 328 (366)
T ss_dssp HSGGGTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH--H
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHHHHHHH--H
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010712 203 ESLQVMEKNYITMATEVEKLRAELMNA 229 (503)
Q Consensus 203 eqlqemEk~L~sm~rEIekLraELekl 229 (503)
+...++.+.|+.+...-.+...++.++
T Consensus 329 ~r~~Dfk~~l~~yl~~qi~~~k~~~~~ 355 (366)
T 3dyt_A 329 NRIYDYNSVIRLYLEQQVQFYETIAEK 355 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 416
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=79.23 E-value=27 Score=29.17 Aligned_cols=84 Identities=13% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 010712 131 EFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ----QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQ 206 (503)
Q Consensus 131 ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elq----qi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlq 206 (503)
+|..++.+|..+..++.+|-.++-.+..++.+++.+.. .-...+.-|+.+.......--.-+..+..+..+.+...
T Consensus 6 ~L~~lR~~ID~iD~~L~~LL~~R~~~~~~v~~~K~~~~~~i~dp~RE~~vl~~~~~~a~~~~l~~~~i~~if~~ii~~s~ 85 (109)
T 1ecm_A 6 PLLALREKISALDEKLLALLAERRELAVEVGKAKLLSHRPVRDIDRERDLLERLITLGKAHHLDAHYITRLFQLIIEDSV 85 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhHhCCCCHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q 010712 207 VMEKNYIT 214 (503)
Q Consensus 207 emEk~L~s 214 (503)
.++..+..
T Consensus 86 ~~q~~~~~ 93 (109)
T 1ecm_A 86 LTQQALLQ 93 (109)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
No 417
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=79.23 E-value=5.1 Score=41.27 Aligned_cols=90 Identities=9% Similarity=0.045 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------HHHHHHHHH
Q 010712 81 QELAAAQHELQILHGQIGG-MKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVV------AREELIAKV 153 (503)
Q Consensus 81 qeLa~lq~EL~~L~~qL~~-lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~------erqeLe~qi 153 (503)
.+|+.+..++..|...+.+ .-.+...+.+.|..+...|+..+..++.++..++.+..-++-+.. .+..++.++
T Consensus 17 ~~l~~~~~r~~el~~~l~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~~e~D~e~~~~a~~e~ 96 (371)
T 1zbt_A 17 DQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANSRETVAVYREYKQVVQNIADAQEMIKDASGDPELEEMAKEEL 96 (371)
T ss_dssp HHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCcchhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhhh
Q 010712 154 HQLTQDLQRAHTDVQQI 170 (503)
Q Consensus 154 q~L~~ELqrlk~elqqi 170 (503)
..|+.+|..+..+++.+
T Consensus 97 ~~l~~~l~~le~~l~~l 113 (371)
T 1zbt_A 97 KNSKVAKEEYEEKLRFL 113 (371)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh
No 418
>2wps_A Trimeric autotransporter adhesin fragment; membrane protein, ION coordination, hydrophobic core, TAA, stutter, stammer, coiled coil; 2.60A {Salmonella enterica subsp} PDB: 2wpr_A
Probab=79.22 E-value=27 Score=29.32 Aligned_cols=95 Identities=11% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHH
Q 010712 104 RELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI-PALLSELESLRQ 182 (503)
Q Consensus 104 ~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi-~~l~~EIe~L~q 182 (503)
.+.+++++..+|-.++.|+.++......+..--.++......+......+..-...+..|...+..+ .+....++++-.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~sQLktTnDdvA~NTTdIaTnT~NIa~nT~NIATNTTNItNLtdsV~~L~dDAed~~~~~~~ 83 (107)
T 2wps_A 4 IEDKIEEILSKIYHIENEIARIKKLIEKVDQNTADITTNTNSINQNTTDIATNTTNINNLSDSITTLMKQIEDKIEEILS 83 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhccchhhccchhhhccccchhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhHHHHHHHH
Q 010712 183 EYHHCRGTYEYEKKFY 198 (503)
Q Consensus 183 ELq~lR~ele~ekk~~ 198 (503)
.+=.++.++..++|.+
T Consensus 84 ~~~~~~~~~~~~~~~~ 99 (107)
T 2wps_A 84 KIYHIENEIARIKKLI 99 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
No 419
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=79.18 E-value=2 Score=38.57 Aligned_cols=45 Identities=11% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 010712 155 QLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYN 199 (503)
Q Consensus 155 ~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~ 199 (503)
.|..+++.|+++++.+..|..+|+.|+.+|++++..+...++...
T Consensus 3 ~l~~~~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~ 47 (182)
T 3kqg_A 3 TLNAQIPELKSDLEKASALNTKIRALQGSLENMSKLLKRQNDILQ 47 (182)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 420
>3tkl_B LIDA protein, substrate of the DOT/ICM system; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Legionella pneumophila}
Probab=79.04 E-value=42 Score=31.90 Aligned_cols=171 Identities=14% Similarity=0.122 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHH----HHHHHHHHHHHHHHHHH
Q 010712 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSEREL----QMRNLTEKIAKMEAELK 123 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~----el~eL~eki~kLEaEL~ 123 (503)
++.+-.+.++...+.|.-...++.|.+.++.|+++-..+......-++.|+.+....+. ...+|.++|..+.++-+
T Consensus 16 ~q~~~~~ye~ai~~~qen~~k~e~L~~rl~kLE~qq~~lt~KY~~Ye~sL~eF~~~sd~yeal~~e~ine~i~~~~~~se 95 (267)
T 3tkl_B 16 IQKMLDEYEQAIKRAQENIKKGEELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMKAFSKDSE 95 (267)
T ss_dssp -----------------------------------------------------------CCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcCHHHHHHHHHHHHhhhH
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------------------------------
Q 010712 124 TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTD------------------------------------- 166 (503)
Q Consensus 124 ~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~e------------------------------------- 166 (503)
.+..+-.....-..+..+|..+-..+..++..|+.-+.-.+.+
T Consensus 96 ~~T~imEs~p~DeeEa~kLlhKh~~~~~KlaNLQdl~dvh~geKsFfNakG~pVtSlKDAhfvinkDQkIvk~~GkfYLL 175 (267)
T 3tkl_B 96 KLTQLMEKHKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPVSSLKDAHLAINKDQEVVEHKGQFYLL 175 (267)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEECTTSCBCSSGGGCSEEEETTEEEEEETTEEEEE
T ss_pred HHHHHHhcCcccHHHHHHHHHHhcccchhhhhHHHHHHHHhhhhhhhccCCCCCcccccceeeeccchhhhhcCCEEEEe
Q ss_pred ----hhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 167 ----VQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEV 219 (503)
Q Consensus 167 ----lqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEI 219 (503)
...+.....+.+..++.....+.+|...+-..-..+-.+ +|+++++.+..-|
T Consensus 176 qkgQw~sikn~pe~keKA~~dy~~akhdL~tVk~~~~~~~~~~-~~~~~~~~~~~~~ 231 (267)
T 3tkl_B 176 QKGQWDAIKNDPAALEKAQKDYSQSKHDLATIKMEALIHKLSL-EMEKQLETINDLI 231 (267)
T ss_dssp ETTCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred cccchhhccCCHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHhH-HHHHHHHHHHHHH
No 421
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=78.90 E-value=4.9 Score=41.93 Aligned_cols=55 Identities=22% Similarity=0.114 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 169 QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLR 223 (503)
Q Consensus 169 qi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLr 223 (503)
+...|..|+.++++++++++++++..+..+.++.+++.+.+.....|..+|+.|+
T Consensus 4 ~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 4 MHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 422
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=78.88 E-value=25 Score=29.63 Aligned_cols=88 Identities=13% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 010712 131 EFQKSKTEAQNLVVARE--------ELIAKVHQLTQDLQRAHTDVQ----QIPALLSELESLRQEYHHCRGTYEYEKKFY 198 (503)
Q Consensus 131 ELeqLraELqqL~~erq--------eLe~qiq~L~~ELqrlk~elq----qi~~l~~EIe~L~qELq~lR~ele~ekk~~ 198 (503)
+|.+++.++..+..++. +|-+++-.+..++.+++.+.. .-...+.-|+.+.......--.-+..++-+
T Consensus 4 ~L~~lR~~ID~ID~~il~~~~~~~~~Ll~eR~~l~~~Va~~K~~~g~pi~dp~RE~~vl~~~~~~~~~~~l~~~~i~~if 83 (104)
T 2gtv_X 4 KLAEIRKKIDEIDNKILKARWPWAEKLIAERNSLAKDVAEIKNQLGIPINDPEREKYIYDRIRKLCKEHNVDENIGIKIF 83 (104)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSSSCCCCHHHHHHHHHHHHHHHHHHTSCSCCHHHHHHHHHHHHHHHHHHTSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHCCCCCcChHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010712 199 NDHLESLQVMEKNYITMATE 218 (503)
Q Consensus 199 ~el~eqlqemEk~L~sm~rE 218 (503)
..+.+....++..+..-..+
T Consensus 84 ~~ii~~s~~~Q~~~l~~~~~ 103 (104)
T 2gtv_X 84 QRLIEHNKALQKQYLEETLE 103 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcC
No 423
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=78.83 E-value=93 Score=35.22 Aligned_cols=152 Identities=13% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 010712 60 VEMQKLATENQRLAATHGTLRQE---LAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSK 136 (503)
Q Consensus 60 ~EIq~Le~enqrLa~e~~~Lrqe---La~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLr 136 (503)
.+.+..+.+--+|+-++..-.++ -..+...-+..+.+|+..+-.-+.+.+....++-+|+++...+++--+...+.+
T Consensus 648 qrtrd~LqkSVqlAiEItT~sqEa~Ar~~A~~~eQea~g~Lerqki~d~a~aE~~r~~Llel~a~s~aves~g~a~AeA~ 727 (861)
T 2zuo_A 648 QRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAE 727 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhcchhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 010712 137 TEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNY 212 (503)
Q Consensus 137 aELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L 212 (503)
+..+..+.+-+. ..+..+|+.+..++..+.+-....+..-.+|.-.-...+-++++.++..+...++.+.|-+.|
T Consensus 728 a~aea~~Ie~ea-~v~~a~l~a~a~~i~~~ael~~~~~~~~~el~~~~~~~ele~~k~~~la~ie~~kf~~~v~ai 802 (861)
T 2zuo_A 728 SRAEAARIEGEG-SVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEAL 802 (861)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhHH-HHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
No 424
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=78.80 E-value=14 Score=30.90 Aligned_cols=62 Identities=15% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 010712 140 QNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES 204 (503)
Q Consensus 140 qqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eq 204 (503)
++|..+.-+|+..+..++.+-.+++...... -..|.+|..|+++|+.+-+.+....+-..++
T Consensus 33 qELIqEYl~LE~~~s~le~e~~rlr~~~~~~---~~~v~eLe~everL~~ENq~L~~e~~~~~~~ 94 (104)
T 3s9g_A 33 QELIKEYLELEKSLSRMEDENNRLRLESKRL---DARVRELELELDRLRAENLQLLTENELHRQQ 94 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---hhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
No 425
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=78.75 E-value=24 Score=33.48 Aligned_cols=152 Identities=10% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 010712 56 ASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKS 135 (503)
Q Consensus 56 e~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqL 135 (503)
..+..+|-.|...++....++. +-..|.....+|-..+.+|..+....|..-..+.+.++........++..-.+|...
T Consensus 15 ~~~~~~iG~ltR~Lh~sl~~l~-~d~~l~~a~~~ipdA~~rL~~Vv~~TE~AA~~iLd~vE~~~~~~~~l~~~~~~l~~~ 93 (214)
T 1kmi_Z 15 GDIIARIGSLTRMLRDSLRELG-LDQAIAEAAEAIPDARDRLYYVVQMTAQAAERALNSVEASQPHQDQMEKSAKALTQR 93 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-HHHHHHHTTTTHHHHHHHTTTHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcC-CChHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 136 KTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITM 215 (503)
Q Consensus 136 raELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm 215 (503)
=..+..-.....+...-+.....-|..+.....++.....+|-..+. .+.|--.. +..+..-++++|++|..|
T Consensus 94 w~~l~~~~~~~~~~~~l~~~~~~~l~~v~~~~~~~~~~l~eIm~Aqd-FQDLTGQ~------I~KVi~lv~~vE~~L~~l 166 (214)
T 1kmi_Z 94 WDDWFADPIDLADARELVTDTRQFLADVPAHTSFTNAQLLKIMMAQD-FQDLTGQV------IKRMMDVIQEIERQLLMV 166 (214)
T ss_dssp HHHHTTSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH------HHHHHHHHHHHHHTTTTT
T ss_pred HHHHHcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHH------HHHHHHHHHHHHHHHHHH
No 426
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=78.68 E-value=13 Score=27.37 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010712 118 MEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV 167 (503)
Q Consensus 118 LEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~el 167 (503)
.++-++.++.|+.|-..|+.||+.-...+..|+.+...++.-+..++..+
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~~i 54 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQGSI 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcccC
No 427
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=78.60 E-value=2.3 Score=41.44 Aligned_cols=84 Identities=7% Similarity=-0.042 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 147 EELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 226 (503)
Q Consensus 147 qeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraEL 226 (503)
..+...+..|..=+.-.+..+....++..+.+++..+++.+..+++.++.++++++.++.+.+.++.-..+-+.+|...|
T Consensus 120 ~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~qly~~v 199 (250)
T 2ve7_C 120 KRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQV 199 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q ss_pred Hhcc
Q 010712 227 MNAP 230 (503)
Q Consensus 227 ekle 230 (503)
.+++
T Consensus 200 t~i~ 203 (250)
T 2ve7_C 200 SKIE 203 (250)
T ss_dssp HCCE
T ss_pred hhce
No 428
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=78.60 E-value=3.9 Score=30.49 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDL 160 (503)
Q Consensus 130 ~ELeqLraELqqL~~erqeLe~qiq~L~~EL 160 (503)
.+++.|+.|+..|+.+..+|..++++|..+|
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 429
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=78.33 E-value=3.7 Score=30.60 Aligned_cols=33 Identities=15% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712 137 TEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQ 169 (503)
Q Consensus 137 aELqqL~~erqeLe~qiq~L~~ELqrlk~elqq 169 (503)
.+++.|+.+..+|..++..|+.+++.+++++.+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 430
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=78.22 E-value=22 Score=31.50 Aligned_cols=106 Identities=14% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---------------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712 105 ELQMRNLTEKIAKMEAELKT---------------AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQ 169 (503)
Q Consensus 105 E~el~eL~eki~kLEaEL~~---------------le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqq 169 (503)
..+++.|...+.+.+.+|+. ..+-+.|++.....-+....++++.....+.|+.+-..+-.-+.-
T Consensus 5 ~~Ele~lr~aL~~AE~eLe~~~~~w~~p~~Lq~wLq~T~E~E~q~~~~kk~~Aekql~~Ake~~eKlkKKrsSv~gs~~~ 84 (136)
T 3ter_A 5 HTEMENLRVQLEEAERRLEANSNGSQAPLALQPLLRRTCENEMAFLEKQRQDCFKEMKEAIEMVDRLQKKQGSVLSSLKL 84 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHC-----CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHhHHHHHHHHHccccHHHHHHHHHHHHHHHHHhhhchheeeee
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 010712 170 IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEK 210 (503)
Q Consensus 170 i~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk 210 (503)
+......|+++...|-.++..+........+....=+.+|.
T Consensus 85 aHs~~sslD~vD~~Il~Ak~aL~evt~~l~Er~~RW~qIE~ 125 (136)
T 3ter_A 85 ATGAASTSDQVDSKIFALKSRMEKIHTLTRETQERWLQIES 125 (136)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 431
>1qoy_A Hemolysin E; toxin, membrane pore former, cytolysin, pores; 2.0A {Escherichia coli} SCOP: h.4.4.1 PDB: 2wcd_A
Probab=78.21 E-value=59 Score=32.57 Aligned_cols=142 Identities=8% Similarity=-0.004 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhccchHHHHHHH--HHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHH----H
Q 010712 80 RQELAAAQHELQILHGQIGGMKSERELQM--RNLTEKIAKMEAELKTAE-PVKLEFQKSKTEAQNLVVAREELIA----K 152 (503)
Q Consensus 80 rqeLa~lq~EL~~L~~qL~~lkae~E~el--~eL~eki~kLEaEL~~le-~Lk~ELeqLraELqqL~~erqeLe~----q 152 (503)
.++++.++.-|..|...+.....++++++ .+|++-|+.++.-+-... +.+..|.++|......+-.-++... +
T Consensus 22 ~~~~e~vk~al~Sls~iv~kY~~elD~kvkf~~LQ~aId~ID~~MlgY~G~AK~~LD~lRslns~A~ltY~~cv~~VfEW 101 (318)
T 1qoy_A 22 DKTVEVVKNAIETADGALDLYNKYLDQVIPWQTFDETIKELSRFKQEYSQAASVLVGDIKTLLMDSQDKYFEATQTVYEW 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHSCHHHHHHHHHHTTTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhhcCCcHHHHhhHHHHHhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 153 VHQLTQDLQRAHTDVQQ--IPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEK 221 (503)
Q Consensus 153 iq~L~~ELqrlk~elqq--i~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIek 221 (503)
.-.+.+-|+-.-.-+.. ......+.+-+-.-+...-..++...+.++.+.+-..+..+.+.+|.++|..
T Consensus 102 CvsinsTl~~~ip~i~~~~~~lS~~dkdilW~iia~al~~L~Ka~~SLe~L~~v~~~~~~Lf~~ml~dv~~ 172 (318)
T 1qoy_A 102 CGVATQLLAAYILLFDEYNEKKASAQKDILIKVLDDGITKLNEAQKSLLVSSQSFNNASGKLLALDSQLTN 172 (318)
T ss_dssp HHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 432
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=78.20 E-value=55 Score=32.27 Aligned_cols=171 Identities=11% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHhhhhccchHHHHHHHHHH
Q 010712 53 QKIASQHVEMQKLATENQRLAATHGTLRQELA---------------------AAQHELQILHGQIGGMKSERELQMRNL 111 (503)
Q Consensus 53 qeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa---------------------~lq~EL~~L~~qL~~lkae~E~el~eL 111 (503)
..-.....|+-....+...|+.++..--.+|. .++++++--........-....-++.|
T Consensus 24 K~s~~~~Ke~~~flkKRa~lE~E~Ak~L~KLa~~~~~~~~~~~~~pl~~i~~~~le~d~~~~~~~~~~~~lq~~~~~~~L 103 (279)
T 3qwe_A 24 KTWSRYAKELLAWTEKRASYELEFAKSTMKIAEAGKVSIQQQSHMPLQYIYTLFLEHDLSLGTLAMETVAQQKRDYYQPL 103 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH------HHHHHHHHHHHH
Q 010712 112 TEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPAL------LSELESLRQEYH 185 (503)
Q Consensus 112 ~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l------~~EIe~L~qELq 185 (503)
.+....++. ....++.+....+++++++...+.........+-+++++++..-.+.... .+.++..++.=+
T Consensus 104 ~~~~~e~ek---~RK~~Ke~w~r~eKk~~dae~~l~KAK~~Y~~r~ee~ekak~~~~~~e~~q~~~~~~K~lek~r~~EE 180 (279)
T 3qwe_A 104 AAKRTEIEK---WRKEFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAPQASPGPSKQQERRRRSRE 180 (279)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC-------------HHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhHHHhhHH
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 186 HCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAEL 226 (503)
Q Consensus 186 ~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraEL 226 (503)
++...++.....+.......+....+|+....+|.+--.+|
T Consensus 181 ea~~K~eeAd~~Y~~~V~~a~~~r~eL~~tk~~~v~~Lr~L 221 (279)
T 3qwe_A 181 EAQAKAQEAEALYQACVREANARQQDLEIAKQRIVSHVRKL 221 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
No 433
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=78.17 E-value=42 Score=30.83 Aligned_cols=153 Identities=10% Similarity=-0.019 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 010712 83 LAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK-TAEPVKLEFQKSKTEAQNLVVAREELIA---KVHQLTQ 158 (503)
Q Consensus 83 La~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~-~le~Lk~ELeqLraELqqL~~erqeLe~---qiq~L~~ 158 (503)
......+|..++.++..+.......+....+-+...+.++. ++.....+++.+..++.+....+-.+.. .--....
T Consensus 6 ~~~~~~~l~~~~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~v~~~d~~iD~l~~~i~~~~~~~l~~~~~~~~d~~~~~ 85 (227)
T 1t72_A 6 GMKLFKELEETKEQVIKMAKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLLEVDIERRCIRMIALYQPEAGDLRMIM 85 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010712 159 DLQRAHTDVQQIPALLSELESLRQEYHHC------RGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNV 232 (503)
Q Consensus 159 ELqrlk~elqqi~~l~~EIe~L~qELq~l------R~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~e 232 (503)
.+-.+-.++++|.+.-..|.++-..+... +.-.+-......-+..-+..+.+.-..+..++.++..+++++..+
T Consensus 86 ~~l~i~~~lERIgD~a~nIa~~~~~~~~~~~~~~~~el~~m~~~v~~ml~~a~~a~~~~d~~~a~~v~~~d~~iD~l~~~ 165 (227)
T 1t72_A 86 GIYKIVSDLERMGDEAENIAERAILLAEEPPLKPYVNINFMSEIVKEMVNDSVISFIQQDTLLAKKVIEKDDTVDELYHQ 165 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Q ss_pred ccc
Q 010712 233 DRR 235 (503)
Q Consensus 233 l~~ 235 (503)
++.
T Consensus 166 i~~ 168 (227)
T 1t72_A 166 LER 168 (227)
T ss_dssp HHH
T ss_pred HHH
No 434
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=78.13 E-value=2.1 Score=50.41 Aligned_cols=183 Identities=9% Similarity=0.060 Sum_probs=0.0
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Q 010712 39 FPPFDMMPPPEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKM 118 (503)
Q Consensus 39 ~~p~~~~p~p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kL 118 (503)
|.+-..+|.-..+++-|+.... -+++-=.+|....+..|+.+|..++.++.-|+.-|+....-....+.+|.+.|.+.
T Consensus 978 ~d~~g~i~k~~~l~eiL~~f~~--~R~e~~~rRk~~~l~~l~~~l~k~~~r~~fi~~vi~~~L~i~~~~~devI~~Lr~~ 1055 (1177)
T 4gfh_A 978 FDPHGKIKKYNSVNEILSEFYY--VRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENL 1055 (1177)
T ss_dssp ECTTSCEEECSSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSSSCHHHHHHHHHHT
T ss_pred EcCCCCccCcCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCeEEEecCCHHHHHHHHHHC
Q ss_pred H------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH---------HHHHHHHHHH
Q 010712 119 E------AELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPAL---------LSELESLRQE 183 (503)
Q Consensus 119 E------aEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l---------~~EIe~L~qE 183 (503)
. ..+.....+..++.....+.........+.....+..............+...| ..|+++|.+|
T Consensus 1056 ~~~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qydyIL~MrL~~LT~ee~ekL~~E 1135 (1177)
T 4gfh_A 1056 GFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRIWSLTKERYQKLLKQ 1135 (1177)
T ss_dssp TCCEECSSSCEECCC------------------------------------CTTTCBTHHHHSSBGGGGSHHHHHHHHHH
T ss_pred CCcccchhhhhhcccchhhhhhhhhhhccccccccccccccchhhhhhcccccccchhhHHhcChHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 184 YHHCRGTYEYEKKF--YNDHLESLQVMEKNYITMATEVEKLR 223 (503)
Q Consensus 184 Lq~lR~ele~ekk~--~~el~eqlqemEk~L~sm~rEIekLr 223 (503)
++++..+|+.+++. .+-+.++|.+++++++...++-.+.|
T Consensus 1136 ~~e~~~ei~~L~~~s~~~lw~~DLd~~~~~~~~~~~~~~e~R 1177 (1177)
T 4gfh_A 1136 KQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEAR 1177 (1177)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhhhcC
No 435
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=78.12 E-value=53 Score=31.96 Aligned_cols=163 Identities=10% Similarity=0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 70 QRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREEL 149 (503)
Q Consensus 70 qrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeL 149 (503)
..+..+...|..-...+-+.++...-.++++...-..-.+.|..-+.....=++.+..+-.-....+.--.+|-..+.++
T Consensus 6 ~~~~~~~~~~~~~~~~ii~~mk~~~P~~e~lv~~g~ky~~al~~~~~a~~af~Da~qKvad~A~~s~g~s~elG~~L~~i 85 (253)
T 2d1l_A 6 AVIEKECSALGGLFQTIISDMKGSYPVWEDFINKAGKLQSQLRTTVVAAAAFLDAFQKVADMATNTRGGTREIGSALTRM 85 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCcchHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHH---------
Q 010712 150 IAKVHQLTQDLQRAHTDVQQ--IPALLSELESLRQEYHHCRGTYEYE-KKFYNDHLESLQVMEKNYITMAT--------- 217 (503)
Q Consensus 150 e~qiq~L~~ELqrlk~elqq--i~~l~~EIe~L~qELq~lR~ele~e-kk~~~el~eqlqemEk~L~sm~r--------- 217 (503)
......|+.++....+.+-. |..|+..|+...+.+..+++.++.. ++...++++...++.+--.+..+
T Consensus 86 ~~~hr~ie~~l~~~~k~~~~eli~pLe~k~e~d~k~~~~~~K~~~~~~k~~r~elkk~~~~~~k~qkK~rk~~~~gk~~~ 165 (253)
T 2d1l_A 86 CMRHRSIEAKLRQFSSALIDCLINPLQEQMEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTLKLQKKAKKVDAQGRGDI 165 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGTTTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccccccCCCcc
Q ss_pred ---------HHHHHHHHHHhcccc
Q 010712 218 ---------EVEKLRAELMNAPNV 232 (503)
Q Consensus 218 ---------EIekLraELekle~e 232 (503)
+|.....+|++.++.
T Consensus 166 ~~~l~~a~q~v~~~~~~le~~~~~ 189 (253)
T 2d1l_A 166 QPQLDSALQDVNDKYLLLEETEKQ 189 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
No 436
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=78.10 E-value=18 Score=31.49 Aligned_cols=92 Identities=11% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHH
Q 010712 105 ELQMRNLTEKIAKMEAELKTAE-PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE-LESLRQ 182 (503)
Q Consensus 105 E~el~eL~eki~kLEaEL~~le-~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~E-Ie~L~q 182 (503)
+..+..|.....+.+++|.-++ .|+-|+...--+- .....=..|..++..++++...|..+++.|..-++| |+.++.
T Consensus 4 e~avdkLe~mFqKA~sDLdyiq~RLe~Ef~~~~Pd~-A~e~NPv~Ll~~LsaIk~ry~~L~~q~~~iaaeQke~~d~ir~ 82 (123)
T 4aj5_K 4 EAEVDKLELMFQKAESDLDYIQYRLEYEIKTNHPDS-ASEKNPVTLLKELSVIKSRYQTLYARFKPVAVEQKESKSRICA 82 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhCCcc-ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhHHHHHHH
Q 010712 183 EYHHCRGTYEYEKKF 197 (503)
Q Consensus 183 ELq~lR~ele~ekk~ 197 (503)
-|...+.-++.+++.
T Consensus 83 tL~~tm~miQ~LQ~~ 97 (123)
T 4aj5_K 83 TVKKTMNMIQKLQKQ 97 (123)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
No 437
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=78.00 E-value=34 Score=32.54 Aligned_cols=111 Identities=10% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 010712 112 TEKIAKMEAELK-TAEPVKLEFQKSKTEAQNLVVAREELIAK-----VHQLTQDLQRAHTDVQQIPALLSELESLRQEYH 185 (503)
Q Consensus 112 ~eki~kLEaEL~-~le~Lk~ELeqLraELqqL~~erqeLe~q-----iq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq 185 (503)
++++.+.+..|+ ....|..++..++.+-+++..++.....+ ...|-.+|-+.+....++-.++..|+.+.-.++
T Consensus 9 ~e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlq 88 (218)
T 3frt_A 9 KELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMK 88 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhh------HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 010712 186 HCRGT------YEYEKKFYNDHLESL--QVMEKNYITMATEVEKL 222 (503)
Q Consensus 186 ~lR~e------le~ekk~~~el~eql--qemEk~L~sm~rEIekL 222 (503)
.+... +...-+........+ ..+..-+..+++|..++
T Consensus 89 t~~s~~~v~~sM~~st~~M~~~n~~m~l~~i~~tM~efekE~~k~ 133 (218)
T 3frt_A 89 NQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKA 133 (218)
T ss_dssp HHHHCC----CCCCCHHHHHHHHHSTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
No 438
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=77.93 E-value=6.9 Score=42.14 Aligned_cols=120 Identities=15% Similarity=0.195 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--------HHHHHHHHhh-hhccchHH
Q 010712 34 PMPGAFPPFDMMPPPEVMEQKIASQHVEMQKLAT-ENQRLAATHGTLRQELAA--------AQHELQILHG-QIGGMKSE 103 (503)
Q Consensus 34 ~~~~~~~p~~~~p~p~~LEqeIe~~~~EIq~Le~-enqrLa~e~~~LrqeLa~--------lq~EL~~L~~-qL~~lkae 103 (503)
| +||-.-.+-.-....||++|...+.+|+.+.. .......+++.|++.+.. ++.+++.|+. ...+++..
T Consensus 8 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 86 (526)
T 2de0_X 8 P-EGPIDQGPAIGRVRVLEEQLVKAKEQIENYKKQTRNGLGKDHEILRRRIENGAKELWFFLQSELKKLKNLEGNELQRH 86 (526)
T ss_dssp ---------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred C-CCccccCccchhHhhHHHHHhhhhhhhhHHhcccCCCCChHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCchHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 104 RELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVH 154 (503)
Q Consensus 104 ~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq 154 (503)
++.-++.+.+....|..++..+..+.-..+--..++..|...++.-...+|
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~l~~~~g~~~~r~~~~~~lt~~vq~~i~~~Q 137 (526)
T 2de0_X 87 ADEFLLDLGHHERSIMTDLYYLSQTDGAGDWREKEAKDLTELVQRRITYLQ 137 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhc
No 439
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=77.74 E-value=4.6 Score=26.29 Aligned_cols=30 Identities=27% Similarity=0.279 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 010712 169 QIPALLSELESLRQEYHHCRGTYEYEKKFY 198 (503)
Q Consensus 169 qi~~l~~EIe~L~qELq~lR~ele~ekk~~ 198 (503)
+|..+++||..|++|+..++-++..++..+
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkqgy 32 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQGY 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccc
No 440
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=77.61 E-value=17 Score=30.92 Aligned_cols=77 Identities=12% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 150 IAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (503)
Q Consensus 150 e~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELek 228 (503)
..++..|..||.-....+.++.=+..|+....+.+.....-=+ ..-+....+..+.|++.+..+...|++|..+|+.
T Consensus 23 ~~ELeSlK~EL~HfE~rl~K~rH~~~el~l~~~k~~~~~~~g~--~e~~s~~~ek~~~le~k~Kk~~~kV~Kl~~dl~~ 99 (109)
T 2fcw_A 23 DKELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGD--GERVSRSREKHALLEGRTKELGYTVKKHLQDLSG 99 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc--hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 441
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=77.34 E-value=20 Score=33.43 Aligned_cols=134 Identities=14% Similarity=0.209 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 20 GMMHPDPFVSGMRPPMPGAFPPFDMMPPPEVME-----------------QKIASQHVEMQKLATENQRLAATHGTLRQE 82 (503)
Q Consensus 20 ~~~~~~~~~~~~~p~~~~~~~p~~~~p~p~~LE-----------------qeIe~~~~EIq~Le~enqrLa~e~~~Lrqe 82 (503)
|||.-||=.+. .-+|+|...-|-...++ +.|...+.=|+.+..+-++-.+.+..+..+
T Consensus 3 gii~~dp~~~~-----~~~~~~p~~~~~~~if~deekSa~L~eLirs~~PeDL~~AN~LiK~m~~~d~~r~e~~~k~~~e 77 (186)
T 1oxz_A 3 GIVKSDPKLPD-----DTTFPLPPPRPKNVIFEDEEKSKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNA 77 (186)
T ss_dssp ---------------------------------CTTHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCCCCCC-----CCCCCCCCCCcccccCCcHHHHHHHHHHhcCCChhhHHHHHHHHHHHhccchhhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhhccchHH------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 83 LAAAQHELQILHGQIGGMKSE------RELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQL 156 (503)
Q Consensus 83 La~lq~EL~~L~~qL~~lkae------~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L 156 (503)
|+.++..+.-|.+-|...... ...-+.+|...+.+++..+.++-.-..+=+++-.++-++...++.+-.+.+.+
T Consensus 78 Le~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e~~ddee~L~elL~~ND~Ln~vl~kY~~~ 157 (186)
T 1oxz_A 78 IEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQL 157 (186)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhHHHHHHHHHHHHH
Q ss_pred HH
Q 010712 157 TQ 158 (503)
Q Consensus 157 ~~ 158 (503)
..
T Consensus 158 ~~ 159 (186)
T 1oxz_A 158 VR 159 (186)
T ss_dssp HH
T ss_pred hc
No 442
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0
Probab=77.33 E-value=36 Score=29.63 Aligned_cols=124 Identities=8% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Q 010712 82 ELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTE--------AQNLVVAREELIAKV 153 (503)
Q Consensus 82 eLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraE--------LqqL~~erqeLe~qi 153 (503)
.|......|...-..|.....+...+|.+.. ++..+..++.++..+-.+...+-.+ ++.+..+.+.++.++
T Consensus 16 ~I~~r~~~l~~r~~~L~~~a~~R~~~Le~s~-~l~~F~~d~~el~~Wi~ek~~~~~~~~~~d~~~v~~~l~kH~afe~El 94 (149)
T 3f31_A 16 DIQERRQQVLDRYHRFKELSTLRRQKLEDSY-RFQFFQRDAEELEKWIQEKLQIASDENYKDPTNLQGKLQKHQAFEAEV 94 (149)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTSCSSCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCcccCCHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 010712 154 HQLTQDLQRAHTDVQQIPALLSE-LESLRQEYHHCRGTYEYEKKFYNDHLESLQ 206 (503)
Q Consensus 154 q~L~~ELqrlk~elqqi~~l~~E-Ie~L~qELq~lR~ele~ekk~~~el~eqlq 206 (503)
......+..+...-+++...... .+.++..++.++..-+.+..+..+-...|.
T Consensus 95 ~a~~~~l~~v~~~g~~Li~~~~~~~~~I~~rl~~l~~~W~~L~~~~~~r~~~L~ 148 (149)
T 3f31_A 95 QANSGAIVKLDETGNLMISEGHFASETIRTRLMELHRQWELLLEKMREKGIKLL 148 (149)
T ss_dssp HHTTHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 443
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=77.19 E-value=31 Score=28.77 Aligned_cols=83 Identities=16% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010712 104 RELQMRNLTEKIAKMEAELKT-------------AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQI 170 (503)
Q Consensus 104 ~E~el~eL~eki~kLEaEL~~-------------le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi 170 (503)
.+.-++.|...+.-+.+-++. ++.|=..|..+...|-+...+..+.....+.|+.+|..++.-.+-|
T Consensus 2 ~~ef~~~l~~sv~if~NRmksn~~RGrsi~nDssVQsLF~~lt~MH~~Ll~~i~~~ee~R~~yE~LQDkL~qi~eAR~AL 81 (98)
T 3f1i_H 2 HEQFLKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGMHPQLLELLNQLDERRLYYEGLQDKLAQIRDARGAL 81 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH-HHHHHHHHHH
Q 010712 171 PALLSE-LESLRQEYHH 186 (503)
Q Consensus 171 ~~l~~E-Ie~L~qELq~ 186 (503)
.+++.| -++|+++.++
T Consensus 82 daLR~eH~~Klrr~aee 98 (98)
T 3f1i_H 82 SALREEHREKLRRAAEE 98 (98)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhcC
No 444
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=77.01 E-value=10 Score=27.74 Aligned_cols=42 Identities=17% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 187 CRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (503)
Q Consensus 187 lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELek 228 (503)
.+..+..++..+..+..++++++..-..+++||+.|++-|..
T Consensus 2 aeq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 2 SERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
No 445
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=77.00 E-value=12 Score=30.77 Aligned_cols=88 Identities=7% Similarity=-0.000 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hh--hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 010712 128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTD--VQ--QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLE 203 (503)
Q Consensus 128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~e--lq--qi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~e 203 (503)
++.+...++.-..++.....+|+..++.|+..|..|... .+ --........++....++++..|..+...+.....
T Consensus 9 i~v~~~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~~~l~~a~~ 88 (103)
T 4i0x_B 9 FSFDLDHIEQVTSRARGFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQMEEAARTAHG 88 (103)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 010712 204 SLQVMEKNYITM 215 (503)
Q Consensus 204 qlqemEk~L~sm 215 (503)
.+.+.+.....+
T Consensus 89 ~y~~~e~~~a~~ 100 (103)
T 4i0x_B 89 AYSEAQEANLRM 100 (103)
T ss_dssp CC----------
T ss_pred HHHHHHHHHHhh
No 446
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=76.95 E-value=7.5 Score=29.13 Aligned_cols=43 Identities=16% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 186 HCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMN 228 (503)
Q Consensus 186 ~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELek 228 (503)
+.+..+..+|.....+..+++.++..-..+++||+.|.+-|..
T Consensus 8 Rse~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 8 RSERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 447
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=76.92 E-value=11 Score=32.15 Aligned_cols=81 Identities=15% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHH---HhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 90 LQI---LHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTD 166 (503)
Q Consensus 90 L~~---L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~e 166 (503)
|+. .+......+.+.+...+-|.+.+.-|.-+--..+.|+.-..+|...|.+|..++-+|+.++..-.-+|..|...
T Consensus 6 l~~~~~~e~~~~k~q~ereeKkkiLaER~kpL~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~r 85 (106)
T 1j1d_B 6 IQKQAQTERKSGKRQTEREKKKKILAERRKVLAIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNR 85 (106)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHhcccHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHH
Q ss_pred hhhh
Q 010712 167 VQQI 170 (503)
Q Consensus 167 lqqi 170 (503)
+..+
T Consensus 86 V~dl 89 (106)
T 1j1d_B 86 INDN 89 (106)
T ss_dssp HHTC
T ss_pred HHHh
No 448
>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation, vacuolar type, hydrolase, ATP synthesis, ATP-binding, hydrogen ION transport; HET: ADP; 4.51A {Thermus thermophilus} PDB: 3a5d_G 3j0j_G*
Probab=76.79 E-value=49 Score=31.41 Aligned_cols=175 Identities=10% Similarity=-0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHH-HHHHHHHHHHHHHHHHhHH
Q 010712 50 VMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMR-NLTEKIAKMEAELKTAEPV 128 (503)
Q Consensus 50 ~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~-eL~eki~kLEaEL~~le~L 128 (503)
.+..+|.....=..-|..+...|..++..+..++..++.++..+-..............- .....+...-.....+..-
T Consensus 13 ~lK~rL~~a~rG~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~~~~~~~~~~~v~~~ 92 (223)
T 3a5c_G 13 QRRGQLRLAQKGVDLLKKKRDALVAEFFGLVREAMEARKALDQAAKEAYAALLLAQAFDGPEVVAGAALGVPPLEGVEAE 92 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------------------------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHhcCCCCeEEEEE
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-H
Q 010712 129 KLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQ-V 207 (503)
Q Consensus 129 k~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlq-e 207 (503)
..-|.-++-=.-+.. ......--+-.--..++.+.....++-.+.-++.+++..+..|..+|+.-++..+.++.-+- .
T Consensus 93 ~~nImGV~vP~~~~~-~~~~~~ygl~~t~~~ld~a~~~~~~~l~~lvelA~le~~~~~L~~eIkkT~RRVNALE~viIP~ 171 (223)
T 3a5c_G 93 VENVWGSKVPRLKAT-FPDGALLSPVGTPAYTLEASRAFRRYAEALIRVANTETRLKKIGEEIKKTTRRVNALEQVVIPG 171 (223)
T ss_dssp ----------------------------------------CHHHHHHTHHHHHHHHHHHTHHHHHHTHHHHHHHHHHHHH
T ss_pred EEEEEEEEeceEEec-cCCCCCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhccc
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010712 208 MEKNYITMATEVEKLRAE 225 (503)
Q Consensus 208 mEk~L~sm~rEIekLraE 225 (503)
+++.+.-...+|+.+++|
T Consensus 172 le~tikyI~~~LdE~ERe 189 (223)
T 3a5c_G 172 IRAQIRFIQQVLEQRERE 189 (223)
T ss_dssp HTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHH
No 449
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=76.78 E-value=22 Score=32.50 Aligned_cols=150 Identities=7% Similarity=-0.004 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 010712 86 AQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK-TAEPVKLEFQKSKTEAQNLVVAR---EELIAKVHQLTQDLQ 161 (503)
Q Consensus 86 lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~-~le~Lk~ELeqLraELqqL~~er---qeLe~qiq~L~~ELq 161 (503)
...+|..++.++..+....+..+....+-+...+.++. ++.....+++.++.++...-... ++....--.....+-
T Consensus 5 ~~~~l~~l~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~v~~~d~~iD~l~~~I~~~~~~lla~~~p~a~dlr~i~~~l 84 (216)
T 2i0m_A 5 FDLELHELEQSFLGLGQLVLETASKALLALASKDKEMAELIINKDHAINQGQSAIELTCARLLALQQPQVSDLRFVISIM 84 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHH-----H-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 010712 162 RAHTDVQQIPALLSELESLRQEYHH-----C-RGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRR 235 (503)
Q Consensus 162 rlk~elqqi~~l~~EIe~L~qELq~-----l-R~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~~ 235 (503)
++..++++|.+.-..|.++-..+.. . ..-.+-.+....-+..-+..+.+.-..+..++.++..+++++..++++
T Consensus 85 ~i~~dlERIgD~a~~Ia~~~~~~~~~~~~~~~~~l~~m~~~v~~~l~~a~~a~~~~d~~~a~~v~~~d~~iD~l~~~~~~ 164 (216)
T 2i0m_A 85 SSCSDLERMGDHMAGIAKAVLQLKENQLAPDEEQLHQMGKLSLSMLADLLVAFPLHQASKAISIAQKDEQIDQYYYALSK 164 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCSSCCC--CHHHHHHHHHHHHHHHHHHHHGGGTCHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
No 450
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=76.70 E-value=18 Score=27.54 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLR 223 (503)
Q Consensus 174 ~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLr 223 (503)
.+|.-+++.-|...+..++.+-|....+.+++.-|.+.+++|..|-..|+
T Consensus 12 ~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 12 LQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
No 451
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=76.67 E-value=20 Score=32.17 Aligned_cols=93 Identities=17% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 49 EVMEQKIASQHVEMQKL--ATENQRLAATHGT-LRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTA 125 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~L--e~enqrLa~e~~~-LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~l 125 (503)
..+++++.....++..+ +.+..++..++.. +...|..+.-.++.+...+.....+....+..+.+.+..+-..++.+
T Consensus 6 ~~l~~~l~~~~~~l~~~~~~~er~~la~~l~~~l~~~L~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~r~~ 85 (218)
T 3ehh_A 6 ERLEEKLEDANERIAELVKLEERQRMARDLVDTLGQKLSLMGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRKI 85 (218)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hH------HHHHHHHHHHHHHH
Q 010712 126 EP------VKLEFQKSKTEAQN 141 (503)
Q Consensus 126 e~------Lk~ELeqLraELqq 141 (503)
-. +...+..+...++.
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~ 107 (218)
T 3ehh_A 86 VSSMKGIRLKDELINIKQILEA 107 (218)
T ss_dssp HTTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHcCCcCHHHHHHHHHHHHHh
No 452
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=76.65 E-value=10 Score=26.71 Aligned_cols=45 Identities=18% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 177 LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEK 221 (503)
Q Consensus 177 Ie~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIek 221 (503)
+..|..|+..++.+-+.++++.--.+..+.-+++++..+.+.|+.
T Consensus 5 vaqlenevaslenenetlkkknlhkkdliaylekeianlrkkiee 49 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIEE 49 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhcC
No 453
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=76.65 E-value=20 Score=38.38 Aligned_cols=115 Identities=9% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHH-------
Q 010712 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK------- 123 (503)
Q Consensus 51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~------- 123 (503)
++-+++....+.+.++.+.++-..-++.|..-+..+...|+.++..-. .+...+.-++...-.....++-+.
T Consensus 374 ~~~R~~v~~rR~~~~L~k~~~r~hilegl~~a~~~id~vI~iIr~s~~-~~~a~~~L~~~f~lse~qa~~IL~m~L~rLT 452 (514)
T 2inr_A 374 LNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKN-KRDAKENLIEVYEFTEEQAEAIVMLQLYRLT 452 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCCS-HHHHHHHHHTTSSCCHHHHHHHHTCCGGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHhcCCCHHHHHHHHhchHHHHh
Q ss_pred --HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 124 --TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTD 166 (503)
Q Consensus 124 --~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~e 166 (503)
+.++|++|++++++++..++..+..-....+-+.+||..++.+
T Consensus 453 ~~e~~kl~~E~~~l~~ei~~l~~iL~~~~~~~~~i~~el~~i~~~ 497 (514)
T 2inr_A 453 NTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKK 497 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
No 454
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=76.61 E-value=19 Score=39.77 Aligned_cols=140 Identities=12% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH--hHHH
Q 010712 52 EQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTA--EPVK 129 (503)
Q Consensus 52 EqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~l--e~Lk 129 (503)
+++|+....+...+..+- +...+..+.+.+|+..-.+++..-.. .-...-.+.+.+.|.+.+.++++-|..- +..+
T Consensus 526 ~~ei~~~~~~~~~~~~~D-~~~~~~~~~~n~le~~i~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~~~wl~~~~~~~~~ 603 (675)
T 3d2f_A 526 AKKLNELIEKENEMLAQD-KLVAETEDRKNTLEEYIYTLRGKLEE-EYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIK 603 (675)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTT-TTGGGSCHHHHHHHHHHHHHHHHHTTTGGGGCCH
T ss_pred HHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCCHHHHHHHHHHHHHHHHHHhcCCchhhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHH
Q 010712 130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEY 193 (503)
Q Consensus 130 ~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ 193 (503)
.+++...++|+++...+..-..+....-..+..++..++....+..++.+.++.-.....+.+.
T Consensus 604 ~~~~~~~~~l~~~~~~i~~r~~e~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (675)
T 3d2f_A 604 AKYIAKYEELASLGNIIRGRYLAKEEEKKQAIRSKQEASQMAAMAEKLAAQRKAEAEKKEEKKD 667 (675)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccC
No 455
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=76.53 E-value=15 Score=30.54 Aligned_cols=73 Identities=15% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 010712 138 EAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE--LESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEK 210 (503)
Q Consensus 138 ELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~E--Ie~L~qELq~lR~ele~ekk~~~el~eqlqemEk 210 (503)
+|++|+.++...+.++....+.|.......+.=++.... +..-+.++..++..|..+++.+.+....-+.+.+
T Consensus 6 ~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~~~k~~~k 80 (96)
T 2ic9_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIAAQKLASK 80 (96)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
No 456
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=76.50 E-value=1.3 Score=38.97 Aligned_cols=104 Identities=11% Similarity=0.118 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 010712 125 AEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLES 204 (503)
Q Consensus 125 le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eq 204 (503)
++.+-.+....+.-..+|..+...+..+++.+..+|+.+..+++ ..--..+...++.||+.+..+++............
T Consensus 11 ~~~i~~~~~~~k~a~~~l~~~~~~~~~el~~~~~el~~~~~~lq-~~ls~~~~~~~~~el~~~~~~~q~~~~~~~~~l~~ 89 (143)
T 1u2m_A 11 MGSLFQQVAQKTGVSNTLENEFKGRASELQRMETDLQAKMKKLQ-SMKAGSDRTKLEKDVMAQRQTFAQKAQAFEQDRAR 89 (143)
T ss_dssp HHHHHHHHHHHHTTTTTTC----------------------------------------------------------CHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712 205 LQVMEKNYITMATEVEKLRAELMNAPN 231 (503)
Q Consensus 205 lqemEk~L~sm~rEIekLraELekle~ 231 (503)
.+ .+.+..+..+|.+.-.+|.+.++
T Consensus 90 ~~--~~~~~~i~~~i~~ai~~vak~~g 114 (143)
T 1u2m_A 90 RS--NEERGKLVTRIQTAVKSVANSQD 114 (143)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHCC
No 457
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=76.47 E-value=12 Score=36.17 Aligned_cols=73 Identities=11% Similarity=0.215 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchH---HHHHHHHHHHHHHHHHHH
Q 010712 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKS---ERELQMRNLTEKIAKMEA 120 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lka---e~E~el~eL~eki~kLEa 120 (503)
+..|....+....++..|..+..-+..++.++-.+|+.++.--+.+-..|+.++. .++.++..+++++.-+++
T Consensus 151 l~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qE 226 (242)
T 3uux_B 151 PSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEE 226 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
No 458
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=76.46 E-value=21 Score=29.02 Aligned_cols=60 Identities=8% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 010712 128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHC 187 (503)
Q Consensus 128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~l 187 (503)
++.=.++-+.-|.....+-.+|...+..+..+|..++.+++++..+-....-|-.-|++|
T Consensus 22 Wk~lAE~Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la~~i~~L 81 (83)
T 1wlq_A 22 WKEVAEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIERL 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 459
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=76.46 E-value=7.8 Score=29.29 Aligned_cols=42 Identities=21% Similarity=0.356 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712 56 ASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI 97 (503)
Q Consensus 56 e~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL 97 (503)
......+..|+.+...|..+...|+.++..++.++..|+..|
T Consensus 18 ~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 18 QKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 460
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=76.36 E-value=70 Score=32.47 Aligned_cols=186 Identities=11% Similarity=0.136 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHhhhhcc----
Q 010712 48 PEVMEQKIASQHVEMQKLATENQRLAATHGTLRQEL------------------------AAAQHELQILHGQIGG---- 99 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeL------------------------a~lq~EL~~L~~qL~~---- 99 (503)
+..+++.|..+.+.+..+......+......+-+.| ..+-+++......+..
T Consensus 53 ~~~l~~~l~kl~k~~~~~~~~~~~~~~a~~~f~~~l~~~~~~~~~~~~~d~~~~~~l~~f~~~~~ei~~~~~~L~~~~~~ 132 (407)
T 4h8s_A 53 AGTLTDYTNQLLQAMQRVYGAQNEMCLATQQLSKQLLAYEKQNFALGKGDEEVISTLHYFSKVVDELNLLHTELAKQLAD 132 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -----chHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 100 -----MKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQK----------SKTEAQNLVVAREELIAKVHQLTQDLQRAH 164 (503)
Q Consensus 100 -----lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeq----------LraELqqL~~erqeLe~qiq~L~~ELqrlk 164 (503)
+..-.+..|+.+++..+.++...++.+.+...... ....-.++...+.......-.+...|+.++
T Consensus 133 ~i~~pL~~f~k~di~~~ke~kK~Fek~~~~Yd~~l~Ky~~~~k~k~~~~~~~e~~~~l~~~Rk~f~~asldyv~~l~~lq 212 (407)
T 4h8s_A 133 TMVLPIIQFREKDLTEVSTLKDLFGLASNEHDLSMAKYSRLPKKKENEKVKTEVGKEVAAARRKQHLSSLQYYCALNALQ 212 (407)
T ss_dssp HTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hhhhh--hHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712 165 TDVQQ--IPALLSELESLRQEYHHCRGTY-EYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 165 ~elqq--i~~l~~EIe~L~qELq~lR~el-e~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el 233 (503)
..... +..+..-+.....-....-..+ +.++.-+..+...++.+..+++...+++..+.+++.......
T Consensus 213 ~rk~~e~le~l~~~~~a~~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (407)
T 4h8s_A 213 YRKQMAMMEPMIGFAHGQINFFKKGAEMFSKRMDSFLSSVADMVQSIQVELEAEAEKMRVSQQELLSVDESV 284 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
No 461
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=76.34 E-value=13 Score=28.56 Aligned_cols=63 Identities=16% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 010712 174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRA 236 (503)
Q Consensus 174 ~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~~~ 236 (503)
..+|.+-.+++.++++.+..+...+.++...+.+-...+...+..++.....+++...+|+.|
T Consensus 4 l~~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 66 (68)
T 1n7s_B 4 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 462
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=76.24 E-value=6.9 Score=29.22 Aligned_cols=61 Identities=20% Similarity=0.284 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhc
Q 010712 169 QIPALLSELESLRQEYHHCRG--TYEYEKKFYNDHLESLQVMEK--NYITMATEVEKLRAELMNA 229 (503)
Q Consensus 169 qi~~l~~EIe~L~qELq~lR~--ele~ekk~~~el~eqlqemEk--~L~sm~rEIekLraELekl 229 (503)
++.++...+..|...+..+-- .|+.++++-+++++.+.++-- ++...+.|+.+|+.|+.++
T Consensus 3 rvkaleekvkaleekvkalggggrieelkkkweelkkkieelggggevkkveeevkkleeeikkl 67 (67)
T 1lq7_A 3 RVKALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIKKL 67 (67)
T ss_dssp SHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhcC
No 463
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=76.17 E-value=5.2 Score=38.36 Aligned_cols=74 Identities=11% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 140 QNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYI 213 (503)
Q Consensus 140 qqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~ 213 (503)
..+..++.+++.++..++.+++..+.++++...|.++=-.-+.++++++.+++..+..+...+.+++.++.++.
T Consensus 56 ~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l~ 129 (277)
T 2f1m_A 56 ATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINLA 129 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 464
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=76.01 E-value=9.6 Score=30.60 Aligned_cols=74 Identities=15% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 010712 163 AHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRA 236 (503)
Q Consensus 163 lk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~~~ 236 (503)
+..+.+.......+|.+-.+++.+++..+..+...+.++-..+.+-...+...+..++.....+++...+|+.|
T Consensus 2 i~~~~~~~~~~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA 75 (83)
T 1sfc_B 2 IIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 75 (83)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 465
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=75.85 E-value=5.2 Score=28.40 Aligned_cols=34 Identities=15% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 010712 178 ESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKN 211 (503)
Q Consensus 178 e~L~qELq~lR~ele~ekk~~~el~eqlqemEk~ 211 (503)
++|-+.++++.++|+..++++.++.++++++++.
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 466
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=75.82 E-value=14 Score=28.57 Aligned_cols=63 Identities=17% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 010712 174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRA 236 (503)
Q Consensus 174 ~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~~~ 236 (503)
..+|.+-..++.++++.+..+...+.++...+.+-.+.+...+..++.....+++...+|+.|
T Consensus 2 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 64 (69)
T 3b5n_B 2 LAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKA 64 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 467
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=75.56 E-value=1.9 Score=42.14 Aligned_cols=83 Identities=11% Similarity=0.022 Sum_probs=0.0
Q ss_pred HHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010712 88 HELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDV 167 (503)
Q Consensus 88 ~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~el 167 (503)
+++.++-..|-....=+|.++..+.+.+.+.++.+.+++.+..|++.++++|++++.++.+.+.++......+.+|-..+
T Consensus 120 ~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~qly~~v 199 (250)
T 2ve7_C 120 KRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQV 199 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q ss_pred hhh
Q 010712 168 QQI 170 (503)
Q Consensus 168 qqi 170 (503)
.+|
T Consensus 200 t~i 202 (250)
T 2ve7_C 200 SKI 202 (250)
T ss_dssp HCC
T ss_pred hhc
No 468
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=75.37 E-value=14 Score=29.20 Aligned_cols=63 Identities=16% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 010712 174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRA 236 (503)
Q Consensus 174 ~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~~~ 236 (503)
..+|++-.+++.+++..+..+...+.++...+.+..+.++..+..++.....+++...+|..|
T Consensus 2 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 64 (77)
T 1jth_B 2 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 64 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 469
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=75.35 E-value=4.1 Score=31.94 Aligned_cols=42 Identities=21% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 010712 192 EYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 192 e~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el 233 (503)
+++.+.+..-.+.+.+||..|.....||..|+.+|.|+...+
T Consensus 14 e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 14 EDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 470
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=75.31 E-value=19 Score=31.51 Aligned_cols=62 Identities=13% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh-----------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 010712 147 EELIAKVHQLTQDLQRAHTDVQQI-----------PALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVM 208 (503)
Q Consensus 147 qeLe~qiq~L~~ELqrlk~elqqi-----------~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqem 208 (503)
..+...+.+|..+|-...+++..+ ++..+.|.+|+.|++.+..+++...++.+.+.++++++
T Consensus 53 ~~f~~~~~ela~dli~k~kqIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 125 (132)
T 1ykh_B 53 EEFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSM 125 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 471
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=75.27 E-value=23 Score=39.52 Aligned_cols=102 Identities=18% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------HHHH------HHHHHHHhhHHHH
Q 010712 131 EFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSEL----------ESLR------QEYHHCRGTYEYE 194 (503)
Q Consensus 131 ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EI----------e~L~------qELq~lR~ele~e 194 (503)
+|-++...++++..+|.+|..+++.++........+..+.+.+.++| +.|+ +=+.+++..++..
T Consensus 11 dl~~i~~~i~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~l~~~yg~l~il~~l~~~~~~~ 90 (706)
T 3fhn_A 11 DLLNINDRIKQVQNERNELASKLQNLKQSLASNDTEVALSEVIAQDIIEVGASVEGLEQLRAKYGDLQILNKLEKVAVQQ 90 (706)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHSCSSHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccccHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhccccc
Q 010712 195 KKFYNDHLESLQVMEKNYITM---------ATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 195 kk~~~el~eqlqemEk~L~sm---------~rEIekLraELekle~el 233 (503)
++....+. ++++++.++..+ -.+|+.+..+|..+..++
T Consensus 91 ~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 137 (706)
T 3fhn_A 91 TQMQAGVD-KLDSFERQLDELAEQPPDQFTLDDVKALHSKLTSVFATV 137 (706)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHH-HHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhc
No 472
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=74.99 E-value=32 Score=29.59 Aligned_cols=105 Identities=9% Similarity=0.014 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 010712 129 KLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVM 208 (503)
Q Consensus 129 k~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqem 208 (503)
...|.-.-.-++.|..+..-.+.+++.-...|++++.+-...-.++++.+.|+.-..-+-.-...+...+.+|.+.+.+.
T Consensus 7 lrqLkIktg~vkRL~KE~~~Y~kE~~~q~~kiekmk~e~~dey~iKkq~evL~Et~~mipd~~~RL~~a~~~L~~~l~~~ 86 (116)
T 3mxz_A 7 IRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRMMIPDCHKRLESALADLKSTLAEL 86 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccc
Q 010712 209 EKNYITMATEVEKLRAELMNAPNVD 233 (503)
Q Consensus 209 Ek~L~sm~rEIekLraELekle~el 233 (503)
+..-..-..++...+.-|+..+..+
T Consensus 87 ~~~~~~~~ee~~~Ak~~l~~ae~~~ 111 (116)
T 3mxz_A 87 EETDEKEGPEIEDAKKTVADVEKQF 111 (116)
T ss_dssp HTC-CCCCHHHHHHHHHHHHHHTC-
T ss_pred cccCCCChHHHHHHHHHHHHHHHhc
No 473
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=74.84 E-value=0.21 Score=41.62 Aligned_cols=89 Identities=8% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 010712 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQ 206 (503)
Q Consensus 127 ~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlq 206 (503)
++..+...-..++..|...+...+..+.....+|++++.++.+.......|.-|+++++--+.+++.++...+.+-.+..
T Consensus 7 ~~~~~~~~~~~ei~~L~~~L~~AEeaL~~KQ~~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~aERaaREk~~~EKe 86 (96)
T 3fx0_A 7 SVVGSERKRGMQLEDLKQQLQQAEEALVAKQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQAREKLAEKKE 86 (96)
T ss_dssp -------------------CCSSTTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTS
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q ss_pred HHHHHHHHH
Q 010712 207 VMEKNYITM 215 (503)
Q Consensus 207 emEk~L~sm 215 (503)
.+...+..+
T Consensus 87 ~L~~ql~~l 95 (96)
T 3fx0_A 87 LLQEQLEQL 95 (96)
T ss_dssp CC-------
T ss_pred HHHHHHHhh
No 474
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=74.82 E-value=31 Score=29.90 Aligned_cols=87 Identities=6% Similarity=0.011 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH---------
Q 010712 55 IASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTA--------- 125 (503)
Q Consensus 55 Ie~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~l--------- 125 (503)
+.+++++|..+..++=.++.++..++.-+-.+...+.++...-......+..++..+..-+-.=...+.-+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~L~~~l~~~aN~T~~aL~~L~~q~Tslr~~~LQNRraLD~Lla~qGG~C~ 95 (125)
T 4g2k_A 16 MKQIEDKIEEILSKIYHIENEIARIKKLIGNLVSRLRRLANQTAKSLELLLRVTTEERTFSLINRHAIDFLLTRWGGTCK 95 (125)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH
Q ss_pred --------------hHHHHHHHHHHHHHHH
Q 010712 126 --------------EPVKLEFQKSKTEAQN 141 (503)
Q Consensus 126 --------------e~Lk~ELeqLraELqq 141 (503)
..++..|++++.++++
T Consensus 96 ~l~e~CCfyind~g~~I~d~Iqkikkd~qK 125 (125)
T 4g2k_A 96 VLGPDCSIGIEDLSRNISEQIDQIKKDEQK 125 (125)
T ss_dssp HHCGGGGCCCCCCHHHHHHHHHHHHHHTTC
T ss_pred HhcccceeeccccchHHHHHHHHHHHHhcC
No 475
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=74.78 E-value=38 Score=32.18 Aligned_cols=118 Identities=5% Similarity=0.012 Sum_probs=0.0
Q ss_pred HHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhh
Q 010712 91 QILHGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRA--HTDVQ 168 (503)
Q Consensus 91 ~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrl--k~elq 168 (503)
...++.+..+.+.++..++.|++.|+..+.+.. +......|-++++|.-.|..+...++....--.+-..+| ..+.+
T Consensus 84 ~~~~~i~~~ln~~r~~~i~~lk~~Ie~~k~~q~-~~~~~~~Lf~~~kEn~al~lEa~yre~~~~v~~EvK~rLDy~v~~e 162 (214)
T 2cly_A 84 KLNEQKIAQLEEVKQASIKQIQDAIDMEKSQQA-LVQKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLDYHISVQ 162 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 010712 169 QIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEK 210 (503)
Q Consensus 169 qi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk 210 (503)
.......+-.-+..=++++.++| .-+...+.+.+-+.+++.
T Consensus 163 ~~~r~~eQ~~mv~wV~~~V~k~i-t~~~ek~~L~~cIadlk~ 203 (214)
T 2cly_A 163 NMMRQKEQEHMINWVEKRVVQSI-SAQQEKETIAKCIADLKL 203 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHH
No 476
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=74.76 E-value=28 Score=29.14 Aligned_cols=81 Identities=10% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhccchH----HHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 87 QHELQILHGQIGGMKS----ERELQMRNLTEKIAKMEAELK----TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQ 158 (503)
Q Consensus 87 q~EL~~L~~qL~~lka----e~E~el~eL~eki~kLEaEL~----~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ 158 (503)
..+|...+..|.+... +..-+++.-++++...+.-|. .......|-.++-..|-..+.....-...++.|.+
T Consensus 6 ~eql~~te~Ai~~A~~aga~~~apEl~~A~dKl~~A~~Am~~~~y~~Ar~lAEqAe~DArLAeAka~~~Ka~~~~~el~~ 85 (98)
T 4fm3_A 6 LEQMRLTEQALEQAKAVGATDDVAELKLAQDKYAAAQIAMTAESYKKARLLAEQAELDARLAESKVLTQKSKDQLGELDK 85 (98)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhh
Q 010712 159 DLQRAHTDV 167 (503)
Q Consensus 159 ELqrlk~el 167 (503)
.|+.|++++
T Consensus 86 ~I~~LrqEl 94 (98)
T 4fm3_A 86 SLKRLRKQL 94 (98)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
No 477
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=74.72 E-value=31 Score=30.71 Aligned_cols=106 Identities=10% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 010712 50 VMEQKIASQHVEMQKLAT--ENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQ-MRNLTEKIAKMEAELKTAE 126 (503)
Q Consensus 50 ~LEqeIe~~~~EIq~Le~--enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~e-l~eL~eki~kLEaEL~~le 126 (503)
.+.+....+.+.|..... +.+++.+.+..- .++..+-.++..++.++...+..-+.. .+++.+++.++..++.
T Consensus 8 ~I~d~A~eL~~aI~eseeyk~yk~A~~~i~~D-~eaq~li~eF~~~Q~~~~~~q~~Gk~~~~~e~~~el~~l~~~l~--- 83 (151)
T 2pih_A 8 DIVQQARNLAKMISETEEVDFFKRAEAQINEN-DKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQEELE--- 83 (151)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHH---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDL 160 (503)
Q Consensus 127 ~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~EL 160 (503)
....|.+++..-+++...++++...|..-..+.
T Consensus 84 -~np~V~~y~~Ae~~l~~LL~~I~~iI~~~I~~~ 116 (151)
T 2pih_A 84 -EIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNE 116 (151)
T ss_dssp -HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
No 478
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=74.68 E-value=19 Score=27.94 Aligned_cols=58 Identities=14% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010712 174 LSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPN 231 (503)
Q Consensus 174 ~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~ 231 (503)
..+|..|.+.+..|..-+..+-..+.+.-+.+..++.++......+++-..+|.++.+
T Consensus 5 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~ 62 (71)
T 2nps_B 5 ETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAY 62 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 479
>1t98_A KICB protein, chromosome partition protein MUKF; winged helix, helix-turn helix, domain swapped, condensin; 2.90A {Escherichia coli} SCOP: a.4.5.65 a.47.6.1
Probab=74.64 E-value=63 Score=31.33 Aligned_cols=138 Identities=11% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHH
Q 010712 57 SQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKTA--EPVKLEFQK 134 (503)
Q Consensus 57 ~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~l--e~Lk~ELeq 134 (503)
.+.-.+.-+..++++..+.-++-..+-.--++-..-|+-.+.++-..++...+.+.++....++++..+ +.+..-|..
T Consensus 124 rLSiqls~va~El~~a~~aA~e~g~e~~Wr~nV~apLkySVaeifd~IDl~QR~mDeQQ~~Vk~~IA~LL~qDW~~AI~~ 203 (287)
T 1t98_A 124 RLSMQLSIVAGELKRAADAAEEGGDEFHWHRNVYAPLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISS 203 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHTHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHhhhchheeeeHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHH
Q 010712 135 SKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYE 194 (503)
Q Consensus 135 LraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~e 194 (503)
++.-|.+....+.+|+..++..-.+|+..-.++|.+..-..+++-+.+-+..+...++..
T Consensus 204 CE~LL~eTs~tLRELqDtL~aagd~lqa~Ll~IQ~~~~~~~~l~~vd~l~~~Lq~klDRI 263 (287)
T 1t98_A 204 CELLLSETSGTLRELQDTLEAAGDKLQANLLRIQDATMTHDDLHFVDRLVFDLQSKLDRI 263 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHH
No 480
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=74.47 E-value=20 Score=30.95 Aligned_cols=57 Identities=21% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 106 LQMRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHT 165 (503)
Q Consensus 106 ~el~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~ 165 (503)
.+.+.|.++..+.+.|++. |+.++.+++..|+......+++..+.+.|..++.+...
T Consensus 4 ~e~~~~~~~~~~~e~e~~~---l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~~~~~~~ 60 (125)
T 1joc_A 4 DERRALLERCLKGEGEIEK---LQTKVLELQRKLDNTTAAVQELGRENQSLQIKHTQALN 60 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCC
No 481
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=74.45 E-value=35 Score=35.88 Aligned_cols=151 Identities=9% Similarity=0.144 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhccch---HHHHHHHHHHHHHHHHHHH
Q 010712 48 PEVMEQKIASQHVEMQKLATENQRLAA----THGTLRQELAAAQHELQILHGQIGGMK---SERELQMRNLTEKIAKMEA 120 (503)
Q Consensus 48 p~~LEqeIe~~~~EIq~Le~enqrLa~----e~~~LrqeLa~lq~EL~~L~~qL~~lk---ae~E~el~eL~eki~kLEa 120 (503)
..-|.+.+.....++..+..++..+.. .++.|..++..+...|..++..+.... ...+.-+..+..-+...+.
T Consensus 251 Lh~l~~~v~~~~p~l~~f~~eL~~v~~Aakvs~~~l~~dl~~L~~~l~~v~~~l~~~~~~~~~~d~f~~~m~~Fl~~A~~ 330 (457)
T 3obv_E 251 LHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQE 330 (457)
T ss_dssp HHHHHHHHHHHCGGGGGHHHHCTTHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccccCChhhhhhHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHH
Q 010712 121 ELKTAEPVKLEFQKSKTEAQNL------VVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYE 194 (503)
Q Consensus 121 EL~~le~Lk~ELeqLraELqqL------~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~e 194 (503)
++..++.+..++...-.++-.- .....++=..+........+...|.++-.+...++...+.+-++.+++..+.
T Consensus 331 ~~~~L~~~~~~~~~~~~~l~~yFgedp~~~~~~eFF~~~~~F~~~fkkA~~eN~~r~e~eek~~r~~~a~e~~~~~~~e~ 410 (457)
T 3obv_E 331 QYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKERLEK 410 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 010712 195 KKFY 198 (503)
Q Consensus 195 kk~~ 198 (503)
++..
T Consensus 411 ~~~~ 414 (457)
T 3obv_E 411 QQKR 414 (457)
T ss_dssp HHHH
T ss_pred HHHH
No 482
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=74.42 E-value=32 Score=27.71 Aligned_cols=63 Identities=19% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 010712 141 NLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQVM 208 (503)
Q Consensus 141 qL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlqem 208 (503)
+|++++++.+.-|+.|++||+....+-. -.+|....+.|.+++.+|..+...+.-+-++-.-+
T Consensus 26 ~lrq~I~DKQ~~i~~Lt~eLq~A~~eaN-----paeIA~~~~~L~qAraDL~~l~r~~av~g~E~RRI 88 (90)
T 4b6x_A 26 ALRQEIEDKQLMVNNLTDELQDAIDEAN-----PAEIANTSQQLRHARADLADLQRRFAVLRNEDRRI 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccC-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
No 483
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=74.34 E-value=6.1 Score=28.66 Aligned_cols=45 Identities=11% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHH
Q 010712 78 TLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAEL 122 (503)
Q Consensus 78 ~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL 122 (503)
++++.+..++..++.|+..++.+.++.+.-...|+.+|.+||..+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~v 46 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQV 46 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 484
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=74.34 E-value=8.1 Score=32.10 Aligned_cols=56 Identities=7% Similarity=-0.015 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 106 LQMRNLTEKIAKMEAELKTA---------EPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQ 161 (503)
Q Consensus 106 ~el~eL~eki~kLEaEL~~l---------e~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELq 161 (503)
.+.+.|..++.+|..|+..+ .+|+..++.+..||+++...+......++.+...|+
T Consensus 23 ~~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~k~~F~~~~~~~~ 87 (93)
T 3sjb_C 23 KKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQAHLHKLE 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 485
>2iaz_A Hypothetical protein SP1372; structural genomics, PSI-2, protei structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: a.281.1.2
Probab=74.24 E-value=37 Score=28.26 Aligned_cols=99 Identities=13% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHH
Q 010712 108 MRNLTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIA--KVHQLTQDLQRAHTDVQQIPALLSEL-ESLRQEY 184 (503)
Q Consensus 108 l~eL~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~--qiq~L~~ELqrlk~elqqi~~l~~EI-e~L~qEL 184 (503)
+..+.++...|...|.. ..+++.++.....+.. +++.|..+..+++.+++.....-.++ +....++
T Consensus 2 m~~I~d~A~eL~~~I~~-----------s~ey~~~~~a~~~i~~d~ea~~l~~~f~~~q~~~~~~q~~G~~~~~e~~~~~ 70 (113)
T 2iaz_A 2 MSNIYDSANELSRGLRG-----------LPEYKAVKAAKDAIAADAEASKIFTDYLAFQEEIQKLAQTGQMPDASFQAKM 70 (113)
T ss_dssp HHHHHHHHHHHHHHHHT-----------SHHHHHHHHHHHHHHHCHHHHHHHHHHHHHGGGTTTTCC----CCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHc-----------CHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 185 HHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKL 222 (503)
Q Consensus 185 q~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekL 222 (503)
+.+..++. ...+...+.+.+..+..|-.+|.+.
T Consensus 71 ~~l~~~i~-----~~p~v~~y~~Ae~~l~~ll~~I~~~ 103 (113)
T 2iaz_A 71 EGFGKQIQ-----GNSLLSEFFTKQQQLAIYLSDIEKI 103 (113)
T ss_dssp HHHHHHHH-----TCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-----CCHHHHHHHHHHHHHHHHHHHHHHH
No 486
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=74.11 E-value=82 Score=32.18 Aligned_cols=171 Identities=13% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhh-------hhccchHHHHHHHHHHHHHHHHHHH
Q 010712 49 EVMEQKIASQHVEMQKLATENQRLAATH-GTLRQELAAAQHELQILHG-------QIGGMKSERELQMRNLTEKIAKMEA 120 (503)
Q Consensus 49 ~~LEqeIe~~~~EIq~Le~enqrLa~e~-~~LrqeLa~lq~EL~~L~~-------qL~~lkae~E~el~eL~eki~kLEa 120 (503)
+.+..-|..+...+..|.....++...+ ..++.++..+-..+..|-. .-.......=..+.+..+++.++.+
T Consensus 191 ~~~~~~~~~l~~~~~~l~~~~~~~~~r~~~~~~~e~~~l~~~l~~l~~~~~~~~~~~~~~Ls~aL~~l~~~~e~i~~l~~ 270 (386)
T 4akv_A 191 DTFKAFSKKMDDSVLQLSTVASELVRKHVGGFRKEFQKLGSAFQAISHSFQMDPPFCSEALNSAISHTGRTYEAIGEMFA 270 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSSGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H-----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH----HHHHHHHHHHHHhhH
Q 010712 121 E-----LKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSE----LESLRQEYHHCRGTY 191 (503)
Q Consensus 121 E-----L~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~E----Ie~L~qELq~lR~el 191 (503)
+ ...+.....+...+-.-++.+-..+.....++.+.+.-+.+.+.+.+++.++..+ ...+++|+.+.+.+.
T Consensus 271 ~Qa~~d~~~L~E~L~~Y~~ll~s~Kdll~~R~~aL~k~~ea~kl~~~~K~~~~~~~e~~~r~e~IS~~~~~El~rF~~~R 350 (386)
T 4akv_A 271 EQPKNDLFQMLDTLSLYQGLLSNFPDIIHLQKGAFAKVKESQRMSDEGRMVQDEADGIRRRCRVVGFALQAEMNHFHQRR 350 (386)
T ss_dssp HGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 192 -EYEKKFYNDHLESLQVMEKNYITMATEV 219 (503)
Q Consensus 192 -e~ekk~~~el~eqlqemEk~L~sm~rEI 219 (503)
...++.+.+..+..-+..+++..+=+..
T Consensus 351 v~Dfk~~l~eyle~qi~~~~~~~~~le~~ 379 (386)
T 4akv_A 351 ELDFKHMMQNYLRQQILFYQRVGQQLEKT 379 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>3euh_A Protein KICB, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} PDB: 3rpu_A
Probab=74.01 E-value=87 Score=32.46 Aligned_cols=179 Identities=11% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHH---------Hh
Q 010712 56 ASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELKT---------AE 126 (503)
Q Consensus 56 e~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~~---------le 126 (503)
..+.-.+..+..++++.....++-..+-.-.++-..-|+-.++.+-.-++...+-|.++...+++++.+ +.
T Consensus 123 l~LS~qls~va~EL~~a~~Aaee~~~e~~W~~~V~~~LkySVaeifd~Idl~QR~mDeQQ~~vk~eIA~LL~~dW~~AI~ 202 (440)
T 3euh_A 123 LRLSMQLSIVAGELKRAADAAEEGGDEFHWHRNVYAPLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAIS 202 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHTTHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCcHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 010712 127 PVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGTYEYEKKFYNDHLESLQ 206 (503)
Q Consensus 127 ~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~ele~ekk~~~el~eqlq 206 (503)
..+.=|.+.-..|.+|+..+...-.+++.....|+........+.-+.+-+..|+..|+++.+==+.....-..-...+.
T Consensus 203 ~Ce~LL~Ets~tLRELqdtL~aagD~lq~qLl~IQ~~~~~~~~l~~vd~l~~~Lq~kLDRI~sWGqqsidlWigYdrhVH 282 (440)
T 3euh_A 203 SCELLLSETSGTLRELQDTLEAAGDKLQANLLRIQDATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIGYDRHVH 282 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHhcccccc
Q 010712 207 VMEKNYITMATEV---EKLRAELMNAPNVDR 234 (503)
Q Consensus 207 emEk~L~sm~rEI---ekLraELekle~el~ 234 (503)
+.-...+.|.++- +.|+..|+..-...|
T Consensus 283 kfIRtaIdmDkNR~fsQRLR~SI~~y~~~pW 313 (440)
T 3euh_A 283 KFIRTAIDMDKNRVFAQRLRQSVQTYFDEPW 313 (440)
T ss_dssp HHHHHTTTTCTTCCHHHHHHHHHHTGGGSCE
T ss_pred HHHHHHHhcCcchhHHHHHHHHHHHhcCCCh
No 488
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=73.85 E-value=9.9 Score=29.01 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010712 56 ASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQI 97 (503)
Q Consensus 56 e~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL 97 (503)
......+..|+.+...|..+...|+.+|..++.++..|...|
T Consensus 19 ~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 19 NRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=73.72 E-value=5.5 Score=26.89 Aligned_cols=31 Identities=13% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 53 QKIASQHVEMQKLATENQRLAATHGTLRQEL 83 (503)
Q Consensus 53 qeIe~~~~EIq~Le~enqrLa~e~~~LrqeL 83 (503)
+++.++++++..|..++..|+.++..|+.-|
T Consensus 1 eRMnQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 1 XRMXQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
No 490
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=73.62 E-value=20 Score=29.62 Aligned_cols=72 Identities=6% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 010712 115 IAKMEAELKTAEPVKLEF---------QKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYH 185 (503)
Q Consensus 115 i~kLEaEL~~le~Lk~EL---------eqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq 185 (503)
.....+.+..+..+..+. ++++.-++.|...+.+|...|..++.. +...|..-+.-+..++.+|+
T Consensus 12 ~~D~~~ql~~l~~~~~~~~~~~~~~~~~El~~~l~el~e~l~DL~~SI~i~e~~------~~~EI~~Rk~~v~~l~~~i~ 85 (95)
T 2c5k_T 12 VKDTKEQLNRINNYITRHNTAGDDDQEEEIQDILKDVEETIVDLDRSIIVMKRD------ENEDVSGREAQVKNIKQQLD 85 (95)
T ss_dssp HHHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS------TTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhHH
Q 010712 186 HCRGTYE 192 (503)
Q Consensus 186 ~lR~ele 192 (503)
.++.++.
T Consensus 86 ~lk~~~~ 92 (95)
T 2c5k_T 86 ALKLRFD 92 (95)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
No 491
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=73.55 E-value=21 Score=39.72 Aligned_cols=112 Identities=11% Similarity=0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHH-------
Q 010712 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEKIAKMEAELK------- 123 (503)
Q Consensus 51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~eki~kLEaEL~------- 123 (503)
++-+++....+.+.++.+.++-..-++.|..-+..+..-|+.++..-.. ++..+..+.-.-...++-|.
T Consensus 325 ~~~R~~v~~rR~~~~L~k~~~r~hiLegl~ia~~~iDeVI~iIR~s~~~----k~~L~~~f~lse~QA~aIL~mrL~rLt 400 (716)
T 1zvu_A 325 LVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEP----KPALMSRFGLTETQAEAILELKLRHLA 400 (716)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSH----HHHHHHSTTCCTTHHHHHHTCCGGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhcCch----HHHHHHhcCCCHHHHHHHHhhHHHHhh
Q ss_pred --HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010712 124 --TAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTD 166 (503)
Q Consensus 124 --~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~e 166 (503)
+.+++++|+++|++++..++..+.+-....+.+.+||..++.+
T Consensus 401 ~le~~kl~~E~~eL~~~i~~l~~iL~~~~~l~~~i~~EL~~i~~k 445 (716)
T 1zvu_A 401 KLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQA 445 (716)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
No 492
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=73.54 E-value=20 Score=28.30 Aligned_cols=76 Identities=20% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHHHHhhhhccchHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 88 HELQILHGQIGGMKSERELQMRNLTEKIAKMEA--ELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRA 163 (503)
Q Consensus 88 ~EL~~L~~qL~~lkae~E~el~eL~eki~kLEa--EL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrl 163 (503)
.+|+.+-.++.....+++..+..|...+..|.. +=...+......++++..+.++...+.++...+..+-..++..
T Consensus 12 e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~A~~~~~~ 89 (93)
T 4ioe_A 12 EELERIAGNFKNAAGEAQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIPILEGISTDLKRIADKFRNT 89 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 493
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=73.50 E-value=59 Score=30.28 Aligned_cols=167 Identities=8% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH------HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 010712 69 NQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTEK------IAKMEAELKTAEPVKLEFQKSKTEAQNL 142 (503)
Q Consensus 69 nqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~ek------i~kLEaEL~~le~Lk~ELeqLraELqqL 142 (503)
.++..+-+..|+..|..++.+-+.|..++ +..+..-.++..+... .++...=+..++.+-.=|-.+-..|..+
T Consensus 14 ~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~-~~N~~lG~~vea~V~~~c~P~E~eKy~~FigDLekVv~LLLsLs~RLaRv 92 (190)
T 3thf_A 14 KQKMDELIKHLNQKIVSLKREQQTISEEC-SANDRLGQDLFAKLAEKVRPSEASKFRTHVDAVGNITSLLLSLSERLAQT 92 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 143 VVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHCRGT--YEYEKKFYNDHLESLQVMEKNYITMATEVE 220 (503)
Q Consensus 143 ~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~lR~e--le~ekk~~~el~eqlqemEk~L~sm~rEIe 220 (503)
...+.....+.+.|.+....+..+.+...+++.-|+.-...+..+-.. -+..-..+....+--..+--+...+...|.
T Consensus 93 enaL~~~~~Er~sL~~K~~~L~~Q~EDAkeLKe~ldRRe~~V~~iL~~~L~~eql~DY~~fv~mKa~Ll~eqReLddkIk 172 (190)
T 3thf_A 93 ESSLETRQQERGALESKRDLLYEQMEEAQRLKSDIERRGVSIAGLLAKNLSADMCADYDYFINMKAKLIADARDLAVRIK 172 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q ss_pred HHHHHHHhcccccccc
Q 010712 221 KLRAELMNAPNVDRRA 236 (503)
Q Consensus 221 kLraELekle~el~~~ 236 (503)
=.+.+|..+...+..+
T Consensus 173 lgeEQL~~L~~sL~q~ 188 (190)
T 3thf_A 173 GSEEQLSSLSDALVQS 188 (190)
T ss_dssp HHHHHHHHHTTC----
T ss_pred hhHHHHHHHHHhhccc
No 494
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=73.45 E-value=27 Score=28.13 Aligned_cols=60 Identities=8% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 010712 128 VKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPALLSELESLRQEYHHC 187 (503)
Q Consensus 128 Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~l~~EIe~L~qELq~l 187 (503)
++.=.++-+.-|.....+..+|-.+|..+..+|..++.+...+..+..+...|-.-|+++
T Consensus 18 Wk~lAE~RR~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~laevl~~l 77 (79)
T 2zxx_A 18 WKEVAEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIERL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 495
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=73.19 E-value=13 Score=28.90 Aligned_cols=52 Identities=10% Similarity=-0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 010712 148 ELIAKVHQLTQDLQRAHTDVQQI--PALLSELESLRQEYHHCRGTYEYEKKFYN 199 (503)
Q Consensus 148 eLe~qiq~L~~ELqrlk~elqqi--~~l~~EIe~L~qELq~lR~ele~ekk~~~ 199 (503)
....+...|..|+.+++.++..+ .+--+....|++.++++..+|+.+++.+.
T Consensus 3 k~~~~~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~ 56 (65)
T 3sja_C 3 ELSKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQ 56 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 496
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=73.04 E-value=27 Score=28.57 Aligned_cols=62 Identities=21% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 010712 111 LTEKIAKMEAELKTAEPVKLEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQQIPA 172 (503)
Q Consensus 111 L~eki~kLEaEL~~le~Lk~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elqqi~~ 172 (503)
.......=++--+..+.-+....++..++..|..+-..|..+|+.|+.++..|+.-+.++..
T Consensus 17 ~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 17 KIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
No 497
>3n27_A Fusion glycoprotein F0, linker, fusion glycoprote; fusion protein, chimera protein, fusion inhibitor, antivirus viral protein; HET: CIT; 1.80A {Hendravirus}
Probab=72.88 E-value=20 Score=28.83 Aligned_cols=63 Identities=13% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------hhHHHHHHHHHHHHHHHHHHhhHH
Q 010712 130 LEFQKSKTEAQNLVVAREELIAKVHQLTQDLQRAHTDVQ---------QIPALLSELESLRQEYHHCRGTYE 192 (503)
Q Consensus 130 ~ELeqLraELqqL~~erqeLe~qiq~L~~ELqrlk~elq---------qi~~l~~EIe~L~qELq~lR~ele 192 (503)
..|..|+.-++.....+.+|..-.+.+..-|+.++..+. ++...+..+++-+.+|.+.++.|.
T Consensus 6 ~~I~~LK~SIq~TN~AV~eL~~a~~~t~iAIqaIQd~IN~~~~~dis~~l~~a~~~l~~sk~~~~~~~~~~~ 77 (80)
T 3n27_A 6 DNINKLKSSIESTNEAVVKLQETAEKTVYVLTALQDYSGGSGGIDISIELNKAKSDLEESKEWIRRSNQKLD 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhhHhHHHhhHHHHHHHHHHHHHHhh
No 498
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=72.83 E-value=12 Score=28.66 Aligned_cols=62 Identities=11% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 010712 175 SELESLRQEYHHCRGTYEYEKKFYNDHLESLQVMEKNYITMATEVEKLRAELMNAPNVDRRA 236 (503)
Q Consensus 175 ~EIe~L~qELq~lR~ele~ekk~~~el~eqlqemEk~L~sm~rEIekLraELekle~el~~~ 236 (503)
..|.+-..++.++++.+..+...+.++-..+.+-...+...+..++.....+++...+|+.|
T Consensus 2 ~~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA 63 (65)
T 1gl2_B 2 SHMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRA 63 (65)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=72.82 E-value=28 Score=27.47 Aligned_cols=63 Identities=14% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHH
Q 010712 51 MEQKIASQHVEMQKLATENQRLAATHGTLRQELAAAQHELQILHGQIGGMKSERELQMRNLTE 113 (503)
Q Consensus 51 LEqeIe~~~~EIq~Le~enqrLa~e~~~LrqeLa~lq~EL~~L~~qL~~lkae~E~el~eL~e 113 (503)
+...|..+..|...|..++..+.+++..++++-.........++..|...+--+.+-+..|.+
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L~~E~~LK~QAVNKLAE 64 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQLLTERTLKTQAVNKLAE 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=72.62 E-value=24 Score=27.83 Aligned_cols=63 Identities=16% Similarity=0.147 Sum_probs=0.0
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010712 94 HGQIGGMKSERELQMRNLTEKIAKMEAELKTAEPVKLEFQ----KSKTEAQNLVVAREELIAKVHQLTQ 158 (503)
Q Consensus 94 ~~qL~~lkae~E~el~eL~eki~kLEaEL~~le~Lk~ELe----qLraELqqL~~erqeLe~qiq~L~~ 158 (503)
...|......+..+..+|..++.++++++..+. ..|+. .++..|..-+...++..+++.+++.
T Consensus 1 ~~~L~k~i~~l~~E~eel~~klk~~~ee~~~~~--eee~~~~~~~lek~L~~E~~LK~QAVNKLAEIMN 67 (71)
T 1s1c_X 1 GSMLTKDIEILRRENEELTEKMKKAEEEYKLEK--EEEISNLKAAFEKNINTERTLKTQAVNKLAEIMN 67 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Done!