Query 010715
Match_columns 503
No_of_seqs 182 out of 1629
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 03:44:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010715.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010715hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1292 Xanthine/uracil transp 100.0 6.5E-92 1.4E-96 722.7 35.0 452 37-494 1-461 (510)
2 COG2233 UraA Xanthine/uracil p 100.0 4.6E-76 9.9E-81 613.7 35.7 409 36-499 4-435 (451)
3 PRK11412 putative uracil/xanth 100.0 4.5E-72 9.8E-77 590.5 41.2 403 48-500 8-430 (433)
4 TIGR03616 RutG pyrimidine util 100.0 6.3E-67 1.4E-71 553.9 41.6 401 35-500 17-428 (429)
5 PRK10720 uracil transporter; P 100.0 2.3E-65 5E-70 542.1 39.6 390 36-500 2-408 (428)
6 TIGR00801 ncs2 uracil-xanthine 100.0 8.3E-65 1.8E-69 536.9 39.3 392 44-496 1-415 (415)
7 TIGR03173 pbuX xanthine permea 100.0 7.7E-63 1.7E-67 521.1 37.1 388 54-498 1-406 (406)
8 PF00860 Xan_ur_permease: Perm 100.0 7.4E-63 1.6E-67 518.5 26.9 372 48-453 1-387 (389)
9 COG2252 Xanthine/uracil/vitami 100.0 2.9E-28 6.2E-33 253.5 30.1 349 33-434 4-375 (436)
10 TIGR00843 benE benzoate transp 99.9 2.2E-22 4.7E-27 209.0 32.7 317 49-421 22-349 (395)
11 COG0659 SUL1 Sulfate permease 99.9 2.5E-20 5.5E-25 203.1 31.0 317 47-425 21-371 (554)
12 PF03594 BenE: Benzoate membra 99.8 1E-18 2.2E-23 179.0 30.1 317 49-418 6-330 (378)
13 TIGR00815 sulP high affinity s 99.8 1.8E-17 4E-22 182.4 31.4 317 47-412 14-368 (563)
14 PRK11660 putative transporter; 99.8 2.3E-17 5E-22 181.8 31.6 320 47-412 29-388 (568)
15 COG3135 BenE Uncharacterized p 99.8 3.2E-17 6.9E-22 164.5 25.4 312 49-418 21-345 (402)
16 PF00916 Sulfate_transp: Sulfa 99.5 1.6E-13 3.4E-18 138.0 9.6 243 162-428 1-273 (280)
17 KOG0236 Sulfate/bicarbonate/ox 99.4 1.4E-11 3.1E-16 137.6 22.1 311 64-412 91-436 (665)
18 TIGR00834 ae anion exchange pr 98.2 0.00096 2.1E-08 76.6 29.5 318 84-427 400-798 (900)
19 KOG1172 Na+-independent Cl/HCO 98.1 0.0014 2.9E-08 74.0 27.3 340 56-426 364-773 (876)
20 PF11840 DUF3360: Protein of u 97.6 0.011 2.5E-07 60.9 21.2 358 36-442 54-430 (492)
21 PF00955 HCO3_cotransp: HCO3- 95.3 0.018 3.9E-07 62.9 4.4 181 228-427 277-479 (510)
22 COG0659 SUL1 Sulfate permease 81.9 11 0.00023 42.1 10.9 121 298-430 24-155 (554)
23 PLN00028 nitrate transmembrane 80.4 46 0.001 35.9 15.1 97 14-110 1-104 (476)
24 TIGR00843 benE benzoate transp 77.9 36 0.00079 36.3 12.7 141 72-248 246-393 (395)
25 TIGR00815 sulP high affinity s 77.7 22 0.00047 39.7 11.7 119 298-427 17-151 (563)
26 PRK11660 putative transporter; 74.9 33 0.00072 38.3 12.2 118 297-425 31-155 (568)
27 PF13792 Sulfate_tra_GLY: Sulf 67.6 18 0.0004 29.8 6.1 59 47-118 16-76 (84)
28 PF03594 BenE: Benzoate membra 61.7 31 0.00067 36.5 7.9 115 293-411 2-127 (378)
29 KOG2675 Adenylate cyclase-asso 52.5 12 0.00026 39.9 3.0 21 3-23 230-250 (480)
30 TIGR00881 2A0104 phosphoglycer 37.7 1E+02 0.0022 30.7 7.2 38 67-104 238-275 (379)
31 PF05977 MFS_3: Transmembrane 37.4 6.1E+02 0.013 28.1 15.7 129 42-184 215-345 (524)
32 TIGR00801 ncs2 uracil-xanthine 37.4 5.4E+02 0.012 27.5 13.1 78 85-184 269-346 (415)
33 PF00860 Xan_ur_permease: Perm 31.0 4.6E+02 0.01 27.6 11.0 95 72-189 255-350 (389)
34 PRK11663 regulatory protein Uh 30.8 1.8E+02 0.0039 30.6 8.0 41 67-107 265-305 (434)
35 KOG1924 RhoA GTPase effector D 29.4 42 0.00091 38.6 2.8 9 35-43 616-624 (1102)
36 PRK09705 cynX putative cyanate 25.0 3.3E+02 0.0072 28.2 8.6 59 47-107 208-266 (393)
37 PRK11375 allantoin permease; P 22.9 9.8E+02 0.021 26.1 12.0 25 76-103 55-79 (484)
38 PRK03699 putative transporter; 21.9 4E+02 0.0087 27.4 8.5 39 66-104 226-264 (394)
39 TIGR00893 2A0114 d-galactonate 21.7 1.9E+02 0.0042 28.7 5.9 37 67-103 237-273 (399)
40 TIGR00886 2A0108 nitrite extru 21.5 2.5E+02 0.0055 28.1 6.8 23 66-88 246-268 (366)
41 TIGR00899 2A0120 sugar efflux 21.4 4E+02 0.0087 26.7 8.3 20 68-87 222-241 (375)
42 TIGR00710 efflux_Bcr_CflA drug 21.1 2.9E+02 0.0063 27.8 7.2 55 47-102 209-263 (385)
43 PRK11412 putative uracil/xanth 20.0 8.9E+02 0.019 26.2 10.7 78 85-184 275-352 (433)
No 1
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.5e-92 Score=722.66 Aligned_cols=452 Identities=54% Similarity=0.986 Sum_probs=431.3
Q ss_pred cceeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchh-HHHHHHHHHHHHHHHHHHHHhcCCcceeeccc
Q 010715 37 LQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDK-GRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPS 115 (503)
Q Consensus 37 ~~y~v~~~pp~~~~illGlQh~l~m~~~~i~~P~ila~a~gl~~~~~-~~li~a~l~~sGI~Tllq~~~G~rlPiv~Gps 115 (503)
+.|++||.|||...+++|+||++.|+++++++|.+++++++.+++|+ +++||+.|+++||.|++|++||.|||++||+|
T Consensus 1 l~y~i~d~P~w~~~i~lgfQhyl~~lg~~v~iP~~lv~~m~~g~~~~~~~lIsT~~f~sGI~TllQt~fG~RLp~v~G~S 80 (510)
T KOG1292|consen 1 LHYCINDNPPWPEIILLGFQHYLVCLGTTVLIPFLLVPLMCGGDEEKAVQLISTIFFVSGITTLLQTTFGTRLPLVQGPS 80 (510)
T ss_pred CccCCCCCCCchHHHHhccchHHHHhhhhhhhhhhhcccccCChHHHHHHHHHHHhhhccHHHHHHHHhhcccccccccc
Confidence 36999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhcCCCCCCCcch----hhhccHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhcCCceehHHHHHHHHHh
Q 010715 116 AAFTLPVLSIINDYNDGSFTSEHD----RFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGL 191 (503)
Q Consensus 116 fa~v~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~Ga~liaGlv~illg~~g~~~~l~~~fpp~V~G~~i~lIGlsL 191 (503)
|+|+++..++.+...++|..++++ +|++.+|+++|++++++.+|+++|++|+++++.|++.|+++.+++.++|+++
T Consensus 81 fafl~p~~~i~~~~~~~~~~~~~~~~~~~~~~~mr~iqGAlivas~vqiilG~sGl~g~l~rfi~Plti~P~v~lvgl~l 160 (510)
T KOG1292|consen 81 FAFLPPALAIISLPRFTCITTPHETDTERFQHRMREIQGALIVASLVQIILGFSGLWGNLLRFIGPLTIVPLVALVGLGL 160 (510)
T ss_pred eehhhHHHHHHhccccCCCCCcccchhHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHhhcCChhhhhHHHHHhhhh
Confidence 999999999998878877655544 8999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccchhhHHHHHHHHHHHHHH--hhhcc--ccchhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCCCccccccc
Q 010715 192 FMRGFPLLGNCVEIGLPMLVLLVICQQY--LKRLH--PKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSC 267 (503)
Q Consensus 192 ~~~g~~~~~~~~~v~l~~l~l~v~~~~~--~~~~~--~~~~~~~r~~avLigivvG~i~a~~lg~~g~~~~~~~~~~~~~ 267 (503)
+..+++.++.||+++++.+++++++++| .++.. ..+++.++++++++++.++|++|.+++.+|.|+.++.+++.+|
T Consensus 161 ~~~~~~~~~~~weI~l~~~llli~fsqy~~~~~~~~~~~~~~if~~f~vll~i~ivW~~~~iLT~tgay~~~~~~t~~~~ 240 (510)
T KOG1292|consen 161 FQDGFPKLGKHWEISLPEILLLILFSQYASLPKKGFGSRRIQIFSRFPVLLAIAIVWLYCFILTITGAYPYKPTTTQSSC 240 (510)
T ss_pred HHhhhhhhhhheeecHHHHHHHHHHHHhhhcccccccccccchHhhccHHHHHHHHHHHHHHHHhccccCCCccccCCcc
Confidence 9999999999999999999999999999 53332 2357789999999999999999999999999999999999999
Q ss_pred ccCccCcCCCCCcccccccccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHhhhCCCCCCcccccchhhhhhhHHHH
Q 010715 268 RTDRSYLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLV 347 (503)
Q Consensus 268 ~~d~~~~i~~ap~~~~P~~~~~g~P~f~~~~il~~l~~~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~i~adGl~sil 347 (503)
|+|.+..++++||+.+|+|+|||.|+||.+..+.|+...+++++||+|+|.+++|.+.+++++++.+|||+.+||+++++
T Consensus 241 RTD~~~vi~~apWi~vPyP~QwG~P~f~~~~~f~m~aa~~va~iES~G~y~a~ar~~~a~ppP~~~inRgi~~eGig~lL 320 (510)
T KOG1292|consen 241 RTDRNGVISSAPWIRVPYPFQWGPPTFSAGLVFAMMAASLVAMIESTGDYIACARLSSATPPPPSVLNRGIGWEGIGSLL 320 (510)
T ss_pred cccHhhhhccCCceeecCCCccCCCcccHHHHHHHHHHHHHHHHHhcchHHHHHHHhcCCCCChhhhhhhhhhhhHHHHH
Confidence 99998889999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred hhhhCCCccccccccccchhcccCCCcchHHHHHHHHHHHHHHhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhh
Q 010715 348 EGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMIFFSIFGKFGAFFASIPLPIFAAIYCVLLGIVAAVGITFIQF 427 (503)
Q Consensus 348 agl~G~~~~tt~~~~n~G~i~~Tg~~SR~~~~~ag~~Lillg~~pk~~alla~IP~~Vlgg~livlf~~i~~~Gi~~l~~ 427 (503)
+|++|+..++|.++||+|+++.||++|||+++++|++|+++|++.||+|++++||.|++||++|++|+++...|++++|+
T Consensus 321 ~gl~G~gtG~Tt~~ENigll~vTKVgSRrvvQ~aa~fmI~~~i~gKFgA~fAsIP~piv~~l~c~~~~mv~avgLSnLQf 400 (510)
T KOG1292|consen 321 AGLFGTGTGSTTSVENIGLLGVTKVGSRRVVQIAAGFMIFFGIFGKFGAFFASIPDPIVGGLLCILFGMVGAVGLSNLQF 400 (510)
T ss_pred HHhhCCCccceeeccceeeEeeeeeeeeeehhhhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhhhhhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccchhhHHHHHHHHhhhhHHhhhcccCCCCCCccccchhhHHHHHHHhhhhHHHHHHHHHHh
Q 010715 428 ANNNSMRNIYILGLSLFLGISIPQYFASKTTEDGHGPVRTGGGWVSCSEKKLYFLFSFFIFGCIVCY 494 (503)
Q Consensus 428 ~~~~~~Rn~~Ivg~sl~~Gl~~P~~~~~~~~~~~~~~~~~~~~~~~~i~~vl~~~~~~~~~~~~~~~ 494 (503)
+|+|+.||++|+|+|+++|+++|+||+++| +|++|+.+|+|+++++++++ .+++++.+.+-
T Consensus 401 ~dlns~RNl~IlG~Sif~gLsip~yF~~~~-----~~v~Tg~~~~d~ilnvll~~-~m~Vggi~A~~ 461 (510)
T KOG1292|consen 401 VDLNSSRNLFILGFSIFLGLSIPQYFEQYP-----GPVHTGNGWFDDILNVLLSS-RMLVGGILAFI 461 (510)
T ss_pred eccccccchhhhhHHHHHhccHHHHHHhCC-----CccccCcHHHHHHHHHHhhH-HHHHHHHHhhh
Confidence 999999999999999999999999999985 48999999999999999999 68777776653
No 2
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.6e-76 Score=613.71 Aligned_cols=409 Identities=29% Similarity=0.486 Sum_probs=375.2
Q ss_pred ccceeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHH----hcCCccee
Q 010715 36 QLQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTL----FGTRLPTV 111 (503)
Q Consensus 36 ~~~y~v~~~pp~~~~illGlQh~l~m~~~~i~~P~ila~a~gl~~~~~~~li~a~l~~sGI~Tllq~~----~G~rlPiv 111 (503)
+.....||++|+.+++++|+||+++|+++++++|++++.+.++++||+.+++|+++++||++|++|++ +|+|+|++
T Consensus 4 ~~~~~~~~~~~~~~~~~lglQH~lamfg~~V~VPlivg~a~~l~~~~~~~Lis~~l~~~GiaTllq~~~~~~~g~~lP~~ 83 (451)
T COG2233 4 LIYVLVDERLPLGKLLLLGLQHLLAMFGATVLVPLLVGLALGLSAEDTAYLISADLLASGIGTLLQLLGTGPGGSGLPSY 83 (451)
T ss_pred cccCcccccCChHHHHHHHHHHHHHHHhcchHhhHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCCCee
Confidence 34456788889999999999999999999999999999999999999999999999999999999997 67799999
Q ss_pred eccchhhHHHHHHHHhhcCCCCCCCcchhhhccHHHHHHHHHHHHHHHHHHHHhhhHH-hhhhhcCCceehHHHHHHHHH
Q 010715 112 MGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWG-NLARFFSPIVIVPFVCVVGLG 190 (503)
Q Consensus 112 ~Gpsfa~v~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ga~liaGlv~illg~~g~~~-~l~~~fpp~V~G~~i~lIGls 190 (503)
+|+||+|+.++.++..+++ ++++.++|+++.+|+++++++.. ++ |++|+|||+|+|+++++||++
T Consensus 84 lG~sFafi~p~i~~~~~~g------------~~~~~~~G~ii~ag~~~~li~~~--~~~~l~rlfPPvVtG~Vi~~IGls 149 (451)
T COG2233 84 LGSSFAFVAPMIAIGGTTG------------DGIAALLGGIIAAGLVYFLISPI--VKIRLARLFPPVVTGPVVLVIGLS 149 (451)
T ss_pred EechHHHHHHHHHHHhccC------------CchHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCCCceEEeEeeeehhh
Confidence 9999999999999876543 35899999999999999999874 56 999999999999999999999
Q ss_pred hhhhhcccccc--------------chhhHHHHHHHHHHHHHHhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhcCC
Q 010715 191 LFMRGFPLLGN--------------CVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAY 256 (503)
Q Consensus 191 L~~~g~~~~~~--------------~~~v~l~~l~l~v~~~~~~~~~~~~~~~~~r~~avLigivvG~i~a~~lg~~g~~ 256 (503)
|.+.+++++++ ++.+++.++++++++++|.|+ ++|+.++|+|+++||++++.+|.
T Consensus 150 L~~vai~~~~G~~~~~~~~~~~~~~~l~la~~tl~~il~~~~f~~g-------~~~~i~ILiGlv~G~~la~~~G~---- 218 (451)
T COG2233 150 LAPVAINMAGGGPGAAGNPDFGSLENLGLALVTLLIILLINRFGKG-------FLRRIPILIGLVVGYLLALFMGM---- 218 (451)
T ss_pred hHHHHHHHhhCCCCCCCCcccCchhHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHHhCC----
Confidence 99998876541 356788899999999998865 69999999999999999999863
Q ss_pred CCCCcccccccccCccCcCCCCCcccccccccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHhhhCCCCCCcccccc
Q 010715 257 NNVPEQTKLSCRTDRSYLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSR 336 (503)
Q Consensus 257 ~~~~~~~~~~~~~d~~~~i~~ap~~~~P~~~~~g~P~f~~~~il~~l~~~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r 336 (503)
+|++. +.++|||++|++++||. +||+.++++++++++++++|++||+.|++++++++.+++++++|
T Consensus 219 ------------vdf~~-v~~a~w~~~P~~~~fg~-~F~~~ail~m~~v~iV~~~E~~G~i~A~~~itg~~~~~~~~l~r 284 (451)
T COG2233 219 ------------VDFSG-VAEAPWFALPTPFYFGM-AFDWGAILTMLPVAIVTIVEHTGDITATGEITGRDLDGKPRLRR 284 (451)
T ss_pred ------------cCccc-cccCceeeCCcccCCCe-eecHHHHHHHHHHHHHHHHHHhhhhhhHHhHhCCcCccCccccc
Confidence 57776 89999999999999999 99999999999999999999999999999999988777799999
Q ss_pred hhhhhhhHHHHhhhhCCCccccccccccchhcccCCCcchHHHHHHHHHHHHHHhhhHHHHhhhCCcchhhHHHHHHHHH
Q 010715 337 SIGLQGIGMLVEGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMIFFSIFGKFGAFFASIPLPIFAAIYCVLLGI 416 (503)
Q Consensus 337 ~i~adGl~silagl~G~~~~tt~~~~n~G~i~~Tg~~SR~~~~~ag~~Lillg~~pk~~alla~IP~~Vlgg~livlf~~ 416 (503)
++++||++++++|+||++|.|||+ ||+|+++.||++||+++.+++++++++|++||+++++++||.||+||+.+++||+
T Consensus 285 g~~aDGlat~iag~fg~~p~Ttfa-qNiGvv~lT~v~Sr~V~~~aavili~lgl~pk~~al~~sIP~pVlGGa~ivmFG~ 363 (451)
T COG2233 285 GLLADGLATLIAGLFGGFPNTTFA-QNIGVVALTGVYSRYVIAGAAVILILLGLFPKFGALIQSIPSPVLGGAMLVLFGM 363 (451)
T ss_pred ceeeccHHHHHHHhcCCCCCCchh-hceeeeeeccCChhHHHHHHHHHHHHHHhhHHHHHHHHhCChhhhhHHHHHHHHH
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcc-chhhHHHHHHHHhh---hhHHhhhcccCCCCCCccccchhhHHHHHHHhhhhHHHHHHHHH
Q 010715 417 VAAVGITFIQFANNNSMR-NIYILGLSLFLGIS---IPQYFASKTTEDGHGPVRTGGGWVSCSEKKLYFLFSFFIFGCIV 492 (503)
Q Consensus 417 i~~~Gi~~l~~~~~~~~R-n~~Ivg~sl~~Gl~---~P~~~~~~~~~~~~~~~~~~~~~~~~i~~vl~~~~~~~~~~~~~ 492 (503)
++.+|+|++.+.|+|++| |++|++.|+.+|++ .|++++++|+ .+-.+..|-...+...+|+
T Consensus 364 Ia~sGir~l~~~~~~~~~~Nl~IvAvsl~~Gig~~~~p~~~~~~p~---------------~~~~l~~sGia~g~i~AIv 428 (451)
T COG2233 364 IAASGIRILIRNKVDRSRRNLLIVAVSLGLGIGVGAVPEVFLQLPA---------------WLRPLLSSGIALGTLTAIV 428 (451)
T ss_pred HHHHHHHHHHhcccccCccceeeehHHHHhCcchhcCchhhhhCcH---------------HHHHHHhccHHHHHHHHHH
Confidence 999999999999998746 99999999999999 4999999764 2344556666778899999
Q ss_pred Hhhhccc
Q 010715 493 CYFVLQQ 499 (503)
Q Consensus 493 ~~~~~~~ 499 (503)
+|+++|+
T Consensus 429 LNlll~~ 435 (451)
T COG2233 429 LNLLLPG 435 (451)
T ss_pred HHHhccc
Confidence 9999985
No 3
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=100.00 E-value=4.5e-72 Score=590.54 Aligned_cols=403 Identities=21% Similarity=0.284 Sum_probs=350.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCcceeeccchhhHHHHHHHHh
Q 010715 48 PQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIIN 127 (503)
Q Consensus 48 ~~~illGlQh~l~m~~~~i~~P~ila~a~gl~~~~~~~li~a~l~~sGI~Tllq~~~G~rlPiv~Gpsfa~v~~~~~i~~ 127 (503)
.+++++|+||+++|+++++++|+++++++|+|++|+.+++|+++++|||+|++|+.+|+|||++||+||+|+++++++..
T Consensus 8 ~~~~~lglQhvl~m~~~~i~vPliva~a~gl~~~~~~~li~~~l~~sGIaTllQ~~~G~rlPiv~G~Sf~~~~~~~~i~~ 87 (433)
T PRK11412 8 RESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITL 87 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCchHHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999998863
Q ss_pred hcCCCCCCCcchhhhccHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhcCCceehHHHHHHHHHhhhhhcccccc------
Q 010715 128 DYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLLGN------ 201 (503)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~Ga~liaGlv~illg~~g~~~~l~~~fpp~V~G~~i~lIGlsL~~~g~~~~~~------ 201 (503)
.... .+ . .....+++.+|+++++|++++++|++++++|++|+|||+|+|+++++||++|++.+++++.+
T Consensus 88 ~~~~-~g-~---~~~~~~g~l~g~~i~~g~~~~~lg~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~~a~~~~~G~~~~~~ 162 (433)
T PRK11412 88 GEAS-RG-T---PINDIATSLAVGIALSGVVTILIGFSGLGHRLARLFTPMVMVVFMLLLGAQLTTIFFKGMLGLPFGIA 162 (433)
T ss_pred cccc-cC-c---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhHhHHHHHHhhHHHHHHHhcCCCccCc
Confidence 2110 00 0 01123455566799999999999999999999999999999999999999999998875421
Q ss_pred ---------chhhHHHHHHHHHHHHHHhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccccCcc
Q 010715 202 ---------CVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTDRS 272 (503)
Q Consensus 202 ---------~~~v~l~~l~l~v~~~~~~~~~~~~~~~~~r~~avLigivvG~i~a~~lg~~g~~~~~~~~~~~~~~~d~~ 272 (503)
++.+++.++.+++.++++.| +++|++++|+|+++||+++.+.. + .|++
T Consensus 163 ~~~~~~~~~~~~~a~~~l~~il~~~~~~~-------g~~~~~svLiGiv~G~v~a~~~~--g--------------~d~~ 219 (433)
T PRK11412 163 DPNGKIQLPPFGLSVAVMCLVLAMIIFLP-------QRIARYSLLVGTIVGWILWAFCF--P--------------SSHS 219 (433)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHHHh--C--------------CCcc
Confidence 12355566666666666654 47999999999999999865432 2 1444
Q ss_pred CcCCCCCcccccccccccccc-cchhHHHHHHHHHHhhhhhhhHHHHHHHhhhCCCCCCcccccchhhhhhhHHHHhhhh
Q 010715 273 YLLSSAPWIKVPYPFQWGTPI-FRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIF 351 (503)
Q Consensus 273 ~~i~~ap~~~~P~~~~~g~P~-f~~~~il~~l~~~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~i~adGl~silagl~ 351 (503)
. +.+++|. +++||.|+ ||++++++++.++++.++|++||+.|++|..+++.+++++++|++++||++|+++|+|
T Consensus 220 ~-v~~a~w~----~~pfG~P~~F~~~~il~~~~~~lv~~~e~iG~~~a~~~~~~~~~~~~~~l~rgi~~dGi~s~laglf 294 (433)
T PRK11412 220 L-SGELHWQ----WFPLGSGGALEPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPL 294 (433)
T ss_pred h-hccCCce----eecCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchhhccHHHHHHHhc
Confidence 3 5788884 34589995 9999999999999999999999999999999876555789999999999999999999
Q ss_pred CCCccccccccccchhcccCCCcchHHHHHHHHHHHHHHhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhhcCCC
Q 010715 352 GSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMIFFSIFGKFGAFFASIPLPIFAAIYCVLLGIVAAVGITFIQFANNN 431 (503)
Q Consensus 352 G~~~~tt~~~~n~G~i~~Tg~~SR~~~~~ag~~Lillg~~pk~~alla~IP~~Vlgg~livlf~~i~~~Gi~~l~~~~~~ 431 (503)
|+.|.++|+ ||+|+++.||++||++..++|++++++|++||+++++++||.||+||+++++|++++.+|+|+++++|+|
T Consensus 295 g~~p~tt~s-qNvGvi~~TgV~SR~v~~~aa~ilillgl~PK~~alia~IP~pVlGg~~~~~Fg~I~~~Gi~~l~~~~~~ 373 (433)
T PRK11412 295 AVIPFSPFV-SSIGLLTQTGDYRRRSFIYGSVMCLLVALIPALTRLFCSIPLPVSSAVMLVSYLPLLGSALVFSQQITFT 373 (433)
T ss_pred CCCCCCchh-hhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999998 9999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CccchhhHHHHHHHHhhh---h-HHhhhcccCCCCCCccccchhhHHHHHHHhhhhHHHHHHHHHHhhhcccc
Q 010715 432 SMRNIYILGLSLFLGISI---P-QYFASKTTEDGHGPVRTGGGWVSCSEKKLYFLFSFFIFGCIVCYFVLQQS 500 (503)
Q Consensus 432 ~~Rn~~Ivg~sl~~Gl~~---P-~~~~~~~~~~~~~~~~~~~~~~~~i~~vl~~~~~~~~~~~~~~~~~~~~~ 500 (503)
+||++|+|+|+.+|++. | ++++++|+ .+..++.|...++...++++|+++|+|
T Consensus 374 -~rn~~ivg~sl~~Glg~~~~p~~~~~~~P~---------------~~~~~l~sgi~~g~l~AilLn~~~~~~ 430 (433)
T PRK11412 374 -ARNIYRLALPLFVGIFLMALPPVYLQDLPL---------------TLRPLLSNGLLVGILLAVLMENLIPWE 430 (433)
T ss_pred -cccchhhHHHHHHHhhHHhCCHHHHHHChH---------------HHHHHHcCcHHHHHHHHHHHHhhcCcc
Confidence 68999999999999995 6 69998863 233445577788899999999999975
No 4
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=100.00 E-value=6.3e-67 Score=553.89 Aligned_cols=401 Identities=23% Similarity=0.367 Sum_probs=345.3
Q ss_pred cccceeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHHH-HhcCCcceeec
Q 010715 35 QQLQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQT-LFGTRLPTVMG 113 (503)
Q Consensus 35 ~~~~y~v~~~pp~~~~illGlQh~l~m~~~~i~~P~ila~a~gl~~~~~~~li~a~l~~sGI~Tllq~-~~G~rlPiv~G 113 (503)
++..|++|||||+++++++|+||+++|+++++++|+++ |+|++ +++++||++|++|+ .+|+|+|++||
T Consensus 17 ~~~~~~~d~~~p~~~~~~~GlQh~lam~~~~v~~Plil----gl~~~-------~tl~~sGi~TllQ~~~~G~rlP~v~G 85 (429)
T TIGR03616 17 EHHPVAPDERLPAAQTIVMGLQHAVAMFGATVLMPLLM----GFDPN-------LTILMSGIGTLLFFLITGGRVPSYLG 85 (429)
T ss_pred cCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCHh-------HHHHHHHHHHHHHHHHhCCCceeEEc
Confidence 44779999999999999999999999999999999996 68775 57999999999997 58999999999
Q ss_pred cchhhHHHHHHHHhhcCCCCCCCcchhhhccHHHHHHHHHHHHHHHHHHHHhhhH---HhhhhhcCCceehHHHHHHHHH
Q 010715 114 PSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAW---GNLARFFSPIVIVPFVCVVGLG 190 (503)
Q Consensus 114 psfa~v~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ga~liaGlv~illg~~g~~---~~l~~~fpp~V~G~~i~lIGls 190 (503)
+||+|++++.++... .+ .+. .+++++++|+++++|++++++++++.+ ++++|+|||+|+|+++++||++
T Consensus 86 ~sf~f~~~~~~~~~~-~~--~~~-----~~~~~~a~ga~iv~G~i~~llg~~~~~~~~~~l~r~fpPvV~G~vv~lIGls 157 (429)
T TIGR03616 86 SSAAFVGAVIAATGY-NG--QGT-----NPNIALALGGIIACGLVYAAIGLVVMRTGTRWIERLMPPVVTGAVVMAIGLN 157 (429)
T ss_pred CcHHHHHHHHHHHhh-cc--cCC-----cchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999988765421 11 000 136899999999999999999998654 8899999999999999999999
Q ss_pred hhhhhcccccc----chhhHHHHHHHHHHHHHHhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCCCcccccc
Q 010715 191 LFMRGFPLLGN----CVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLS 266 (503)
Q Consensus 191 L~~~g~~~~~~----~~~v~l~~l~l~v~~~~~~~~~~~~~~~~~r~~avLigivvG~i~a~~lg~~g~~~~~~~~~~~~ 266 (503)
+++.++++.+. +| .++.+++.+++++++.|+ ++|++++|+|+++||++|+.++.. +.. .
T Consensus 158 L~~vg~~~~~~~~~~~~-~al~tl~~i~l~~l~~~~-------~l~~~avLiGivvG~iva~~l~~~--~g~-------~ 220 (429)
T TIGR03616 158 LAPIAVKSVSASGFDSW-MAVLTILCIGAVAVFTRG-------MLQRLLILVGLIAAYLAYFILTNV--FGL-------G 220 (429)
T ss_pred HHHHHHHhccccccccH-HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhh--cCC-------C
Confidence 99999987542 33 566777766667776654 689999999999999999886421 110 1
Q ss_pred cccCccCcCCCCCcccccccccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHhhhCCCCCCcccccchhhhhhhHHH
Q 010715 267 CRTDRSYLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGML 346 (503)
Q Consensus 267 ~~~d~~~~i~~ap~~~~P~~~~~g~P~f~~~~il~~l~~~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~i~adGl~si 346 (503)
+++|++. +.+++|+++| +|+.|+||++.++.+++.++++++|++||+.++++.++++. +++++|++++||++|+
T Consensus 221 ~~vd~s~-v~~a~~~~lP---~~~~p~f~~~~il~~~~~~lv~~~esiG~~~a~~~~~~~~~--~~~i~r~l~adGl~t~ 294 (429)
T TIGR03616 221 KAVDFSP-ISQAAWFGLP---NFHTPVFNANAMLLIAPVALILVAENLGHFKAVAGMTGRNL--DPYMGRAFVGDGLATM 294 (429)
T ss_pred ccccCcc-cccCccccCC---cCCCceEcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCC--CchhccchhhhhHHHH
Confidence 2357764 7789999999 57889999999999999999999999999999999987553 3469999999999999
Q ss_pred HhhhhCCCccccccccccchhcccCCCcchHHHHHHHHHHHHHHhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHH-
Q 010715 347 VEGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMIFFSIFGKFGAFFASIPLPIFAAIYCVLLGIVAAVGITFI- 425 (503)
Q Consensus 347 lagl~G~~~~tt~~~~n~G~i~~Tg~~SR~~~~~ag~~Lillg~~pk~~alla~IP~~Vlgg~livlf~~i~~~Gi~~l- 425 (503)
++|++|+.|.++|+ ||+|+++.||++||++...+++++++++++||+++++++||.||+||+++++|+++..+|+|++
T Consensus 295 ~agl~g~~p~tt~~-en~g~i~~T~v~SR~v~~~a~~~lillgl~Pk~~al~~~IP~pVlgG~~i~~fg~i~~~Gi~~l~ 373 (429)
T TIGR03616 295 LSGSVGGTGVTTYA-ENIGVMAVTKVYSTLVFVAAAVFAILLGFSPKFGALIHTIPVAVLGGASIVVFGLIAVAGARIWV 373 (429)
T ss_pred HHHhcCCCCCccee-eeeeeeeecCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988 9999999999999999999999999999999999999999999999999999999999999988
Q ss_pred -hhcCCCCccchhhHHHHHHHHhhh-hHHhhhcccCCCCCCccccchhhHHHHHHHhhhhHHHHHHHHHHhhhcccc
Q 010715 426 -QFANNNSMRNIYILGLSLFLGISI-PQYFASKTTEDGHGPVRTGGGWVSCSEKKLYFLFSFFIFGCIVCYFVLQQS 500 (503)
Q Consensus 426 -~~~~~~~~Rn~~Ivg~sl~~Gl~~-P~~~~~~~~~~~~~~~~~~~~~~~~i~~vl~~~~~~~~~~~~~~~~~~~~~ 500 (503)
++.|+|++||.+|+|+|+.+|++. +. ++ -.++.|....+...++++|+++|++
T Consensus 374 ~~~~d~~~~rn~~ivg~sl~~g~g~~~~-------------------~~---~~~~~s~i~~~~~~ai~Ln~~l~~~ 428 (429)
T TIGR03616 374 QNKVDLTQNGNLIMVAVTLVLGAGDFAL-------------------TI---GAFTLGGIGTATFGAIVLNALLNRD 428 (429)
T ss_pred hccCCcCccceeehhHHHHHHHhHHHHH-------------------HH---HHHhhCcHHHHHHHHHHHHHhcCCC
Confidence 678998888999999999999985 22 11 2344577778889999999999975
No 5
>PRK10720 uracil transporter; Provisional
Probab=100.00 E-value=2.3e-65 Score=542.09 Aligned_cols=390 Identities=24% Similarity=0.380 Sum_probs=342.8
Q ss_pred ccceeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhc-CCcceeecc
Q 010715 36 QLQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFG-TRLPTVMGP 114 (503)
Q Consensus 36 ~~~y~v~~~pp~~~~illGlQh~l~m~~~~i~~P~ila~a~gl~~~~~~~li~a~l~~sGI~Tllq~~~G-~rlPiv~Gp 114 (503)
+..|++|||||+.+++++|+||+++|+++++++|+++ |+|++ .++++||++|++|++++ .|+|++||+
T Consensus 2 ~~~~~~~~~~p~~~~~~lglQhvl~m~~~~i~~Pli~----gl~~~-------~~l~~sGi~TliQ~~~~g~rlP~~~G~ 70 (428)
T PRK10720 2 RRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPILF----HINPA-------TVLLFNGIGTLLYLFICKGKIPAYLGS 70 (428)
T ss_pred CcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCHH-------HHHHHHHHHHHHHHHhccCccceEEeC
Confidence 4679999999999999999999999999999999986 78874 37899999999999864 699999999
Q ss_pred chhhHHHHHHHHhhcCCCCCCCcchhhhccHHHHHHHHHHHHHHHHHHHHhh--h-HHhhhhhcCCceehHHHHHHHHHh
Q 010715 115 SAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSG--A-WGNLARFFSPIVIVPFVCVVGLGL 191 (503)
Q Consensus 115 sfa~v~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ga~liaGlv~illg~~g--~-~~~l~~~fpp~V~G~~i~lIGlsL 191 (503)
||+|++++.++.. ++|++++|+++++|+++++++++. + ++|++|+|||.|+|+++++||+++
T Consensus 71 sfa~i~~~~~~~~---------------~~~~~~lgav~v~Glv~ills~~~~~~g~~~l~~~fPp~v~G~~i~lIGl~L 135 (428)
T PRK10720 71 SFAFISPVLLLLP---------------LGYEVALGGFIMCGVLFCLVALIVKKAGTGWLDVLFPPAAMGAIVAVIGLEL 135 (428)
T ss_pred cHHHHHHHHHHHH---------------ccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHh
Confidence 9999999887652 259999999999999999999972 1 578999999999999999999999
Q ss_pred hhhhccccc-----------cchhhHHHHHHHHHHHHHHhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 010715 192 FMRGFPLLG-----------NCVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVP 260 (503)
Q Consensus 192 ~~~g~~~~~-----------~~~~v~l~~l~l~v~~~~~~~~~~~~~~~~~r~~avLigivvG~i~a~~lg~~g~~~~~~ 260 (503)
.+.++.+.+ .++.+++.+++++++++++.|+ ++|++++++|+++||++++.++.
T Consensus 136 ~~~~~~~~g~~~~~~~~~~~~~~~lalv~l~iil~~~~~~kg-------~~~~~~iLigIvvG~ila~~lG~-------- 200 (428)
T PRK10720 136 AGVAAGMAGLLPAEGQTPDSKTIIISMVTLAVTVLGSVLFRG-------FLAIIPILIGVLVGYALSFAMGM-------- 200 (428)
T ss_pred HHHHHhhccccCCCCcccchHHHHHHHHHHHHHHHHHHHhcc-------HHHHhHHHHHHHHHHHHHHHhcC--------
Confidence 999876543 1356777787777777666654 58899999999999999998863
Q ss_pred cccccccccCccCcCCCCCcccccccccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHhhhCCCCCCcccccchhhh
Q 010715 261 EQTKLSCRTDRSYLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGL 340 (503)
Q Consensus 261 ~~~~~~~~~d~~~~i~~ap~~~~P~~~~~g~P~f~~~~il~~l~~~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~i~a 340 (503)
.|++. +.+++|+++|. |+.|+||+..++.++..+++.++|++||+.++++..+++..++++.||++.+
T Consensus 201 --------~d~~~-v~~a~~~~lP~---~~~P~fd~~~il~l~~~~lv~~~EsiG~~~a~~~~~~~~~~~~~~~~r~l~a 268 (428)
T PRK10720 201 --------VDTTP-IIEAHWFALPT---FYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFA 268 (428)
T ss_pred --------CCHHH-hhcCccccCCC---CCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchHhh
Confidence 24443 67789999994 6778999999999999999999999999999999987654446789999999
Q ss_pred hhhHHHHhhhhCCCccccccccccchhcccCCCcchHHHHHHHHHHHHHHhhhHHHHhhhCCcchhhHHHHHHHHHHHHH
Q 010715 341 QGIGMLVEGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMIFFSIFGKFGAFFASIPLPIFAAIYCVLLGIVAAV 420 (503)
Q Consensus 341 dGl~silagl~G~~~~tt~~~~n~G~i~~Tg~~SR~~~~~ag~~Lillg~~pk~~alla~IP~~Vlgg~livlf~~i~~~ 420 (503)
||++|+++|+||++|.++|+ ||+|+++.||++||+++.++++++++++++||+++++++||.||+||+.+++|+++..+
T Consensus 269 dGlatii~glfG~~p~tty~-en~g~ia~T~v~sr~v~~~a~~~li~lg~~pk~~a~ia~iP~pVlgg~~i~~fg~i~~~ 347 (428)
T PRK10720 269 NGLSTVISGFFGSTPNTTYG-ENIGVMAITRVYSTWVIGGAAIIAILLSCVGKLAAAIQAIPLPVMGGVSLLLYGVIGAS 347 (428)
T ss_pred hhHHHHHHHhcCCCCccccc-cccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH--hhcCCCCccchhhHHHHHHHHhhhhHHhhhcccCCCCCCccccchhhHHHHHHHhhhhHHHHHHHHHHhhhcc
Q 010715 421 GITFI--QFANNNSMRNIYILGLSLFLGISIPQYFASKTTEDGHGPVRTGGGWVSCSEKKLYFLFSFFIFGCIVCYFVLQ 498 (503)
Q Consensus 421 Gi~~l--~~~~~~~~Rn~~Ivg~sl~~Gl~~P~~~~~~~~~~~~~~~~~~~~~~~~i~~vl~~~~~~~~~~~~~~~~~~~ 498 (503)
|+|.+ ++.|++++||.+|+|+|+.+|++...+ ++..++.+.-..++..++++|+++|
T Consensus 348 Gi~~l~~~~~~~~~~~n~~i~~~~l~~g~~~~~~---------------------~~~~~~~~gi~~g~~~ai~Lnlll~ 406 (428)
T PRK10720 348 GIRVLIESKVDYNKAQNLILTSVILIIGVSGAKV---------------------NIGAAELKGMALATIVGIGLSLIFK 406 (428)
T ss_pred HHHHHHHccCCCCcccchhHHHHHHHHHHHHHHH---------------------HHHHHhcCcHHHHHHHHHHHHHHhc
Confidence 99999 788998889999999999999985432 1334555666788899999999999
Q ss_pred cc
Q 010715 499 QS 500 (503)
Q Consensus 499 ~~ 500 (503)
.+
T Consensus 407 ~~ 408 (428)
T PRK10720 407 LI 408 (428)
T ss_pred cc
Confidence 64
No 6
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=100.00 E-value=8.3e-65 Score=536.92 Aligned_cols=392 Identities=28% Similarity=0.464 Sum_probs=351.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhcC---CcceeeccchhhHH
Q 010715 44 NPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGT---RLPTVMGPSAAFTL 120 (503)
Q Consensus 44 ~pp~~~~illGlQh~l~m~~~~i~~P~ila~a~gl~~~~~~~li~a~l~~sGI~Tllq~~~G~---rlPiv~Gpsfa~v~ 120 (503)
|||+++++++|+||+++|+++++++|++++++. +|++|+.+++|++++++|++|++|+++++ |+|.++|++|+|++
T Consensus 1 ~~~~~~~~~lglQh~l~~~~~~i~~p~iv~~~~-l~~~~~~~li~at~~~sgi~Tllq~~~~~~~~~lp~~~G~sfa~i~ 79 (415)
T TIGR00801 1 RPPFLQTLVLGLQHLLAMFGGTVLVPLLVGLAP-LSAEQTQYLVSISLLTSGIGTLLQLFRTGGQIGLPSYLGSSFAFVS 79 (415)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhcCceeeeeeecCcHHHHH
Confidence 689999999999999999999999999999999 99999999999999999999999997643 37999999999999
Q ss_pred HHHHHHhhcCCCCCCCcchhhhccHHHHHHHHHHHHHHHHHHHHh--h-hHHhhhhhcCCceehHHHHHHHHHhhhhhcc
Q 010715 121 PVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYS--G-AWGNLARFFSPIVIVPFVCVVGLGLFMRGFP 197 (503)
Q Consensus 121 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ga~liaGlv~illg~~--g-~~~~l~~~fpp~V~G~~i~lIGlsL~~~g~~ 197 (503)
+...+..+ +++++++|+++++|+++++++++ + .++|++|+|||.|+|.++++||+++.+.+++
T Consensus 80 ~~~~~~~~--------------~~~~~~~g~~i~~gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g~iv~~IGl~L~~i~l~ 145 (415)
T TIGR00801 80 PMIAIGSG--------------LGIPAIMGALIATGLVYTLLSLLIKKLGPRWLMKLFPPVVTGPVVMLIGLSLIPVAVK 145 (415)
T ss_pred HHHHHHhc--------------cCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchhHHHhHHHHHHHHHHHHHH
Confidence 88776532 36899999999999999999985 3 3578899999999999999999999999887
Q ss_pred ccc--------------cchhhHHHHHHHHHHHHHHhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCCCccc
Q 010715 198 LLG--------------NCVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQT 263 (503)
Q Consensus 198 ~~~--------------~~~~v~l~~l~l~v~~~~~~~~~~~~~~~~~r~~avLigivvG~i~a~~lg~~g~~~~~~~~~ 263 (503)
+++ .++.+++.+++++++++++.|+ ++|++++++++++||++++.++.
T Consensus 146 ~~~g~~~~~~~~~~~~~~~~~vg~~~l~~~vl~~~~~~g-------~~~~~aiLigiv~g~i~a~~lg~----------- 207 (415)
T TIGR00801 146 MAAGGEAAMSSATYGSLENLGVAFVVLALIILLNRFGKG-------FLKSISILIGILVGYILALFMGI----------- 207 (415)
T ss_pred HhccCCCcccccccCchhhHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHcCC-----------
Confidence 653 1245777788777777777654 68899999999999999998853
Q ss_pred ccccccCccCcCCCCCcccccccccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHhhhCCCCCCcccccchhhhhhh
Q 010715 264 KLSCRTDRSYLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGI 343 (503)
Q Consensus 264 ~~~~~~d~~~~i~~ap~~~~P~~~~~g~P~f~~~~il~~l~~~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~i~adGl 343 (503)
+|+++ +.++||+++|.+++|| |+||+..+.+++++++++++|++|++.++++.+++++++++++||++.+||+
T Consensus 208 -----~~~~~-v~~~~~~~lP~~~~~g-~~f~~~~~~~~~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~~~r~l~adGl 280 (415)
T TIGR00801 208 -----VDFSP-VIDAPWFSLPTPFTFG-PSFEWPAILTMLPVAIVSLVESIGDITATADVSGRDLSGDPRLHRGVLADGL 280 (415)
T ss_pred -----ccchh-hccCcccccCCccCCC-ceecHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCCCCCccccchHHHhhH
Confidence 35543 6778999999988888 6999999999999999999999999999999998765547889999999999
Q ss_pred HHHHhhhhCCCccccccccccchhcccCCCcchHHHHHHHHHHHHHHhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHH
Q 010715 344 GMLVEGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMIFFSIFGKFGAFFASIPLPIFAAIYCVLLGIVAAVGIT 423 (503)
Q Consensus 344 ~silagl~G~~~~tt~~~~n~G~i~~Tg~~SR~~~~~ag~~Lillg~~pk~~alla~IP~~Vlgg~livlf~~i~~~Gi~ 423 (503)
+|+++|++|++|.++|+ ||+|+++.||++||++.+++++++++++++||++++++.||.||+||+++++|+++..+|+|
T Consensus 281 ~~i~aglfG~~p~t~~s-en~g~~~~T~~~sr~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l~~~~~i~~~gi~ 359 (415)
T TIGR00801 281 ATLLAGLFGGFPNTTFA-QNIGVIALTRVASRWVIVGAAVILIALGFFPKIAALITSIPSPVLGGASIVMFGMIAASGIR 359 (415)
T ss_pred HHHHHHhcCCCCCcchh-hhheeeeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCccchhhHHHHHHHHhhh---hHHhhhcccCCCCCCccccchhhHHHHHHHhhhhHHHHHHHHHHhhh
Q 010715 424 FIQFANNNSMRNIYILGLSLFLGISI---PQYFASKTTEDGHGPVRTGGGWVSCSEKKLYFLFSFFIFGCIVCYFV 496 (503)
Q Consensus 424 ~l~~~~~~~~Rn~~Ivg~sl~~Gl~~---P~~~~~~~~~~~~~~~~~~~~~~~~i~~vl~~~~~~~~~~~~~~~~~ 496 (503)
.+++.|+|++||++|+|+|+.+|+++ |++++++| ++.|...++...++++|++
T Consensus 360 ~l~~~~~~~~r~~~i~~~s~~~g~~~~~~p~~~~~~p--------------------~~~~g~~~g~~~ai~Ln~~ 415 (415)
T TIGR00801 360 ILIRNKLDNRRNRNIIAASVGLGLGVTGVPDIFGNFP--------------------LLLSGIALAGIVAILLNLI 415 (415)
T ss_pred HHHhCccCcccceehHHHHHHHHHHHhccHHHHhhCc--------------------hhcccHHHHHHHHHHHhcC
Confidence 99999998789999999999999996 99987763 5567777888888888874
No 7
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=100.00 E-value=7.7e-63 Score=521.14 Aligned_cols=388 Identities=29% Similarity=0.478 Sum_probs=347.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHHH----HhcCCcceeeccchhhHHHHHHHHhhc
Q 010715 54 AFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQT----LFGTRLPTVMGPSAAFTLPVLSIINDY 129 (503)
Q Consensus 54 GlQh~l~m~~~~i~~P~ila~a~gl~~~~~~~li~a~l~~sGI~Tllq~----~~G~rlPiv~Gpsfa~v~~~~~i~~~~ 129 (503)
|+||+++|+++++++|+++++++|+|++|+.++++++++++|++|++|+ .+|+|+|+++|||+++++++.....+
T Consensus 1 ~~Qh~l~~~~~~i~~p~i~~~a~gl~~~~~~~~i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~~~~~~~~- 79 (406)
T TIGR03173 1 GLQHVLAMYAGAVAVPLIVGGALGLSAEQTAYLISADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGPMIAIGAG- 79 (406)
T ss_pred CccchHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHHHHHHhhh-
Confidence 6899999999999999999999999999999999999999999999998 47999999999999999987766432
Q ss_pred CCCCCCCcchhhhccHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhcCCceehHHHHHHHHHhhhhhccccc---------
Q 010715 130 NDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLLG--------- 200 (503)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~Ga~liaGlv~illg~~g~~~~l~~~fpp~V~G~~i~lIGlsL~~~g~~~~~--------- 200 (503)
++|++++|+++++|++++++| ++++|++|+|||.|+|.++++||+++.+.+++++.
T Consensus 80 -------------~~~~~~~ga~~v~Gii~illg--~~~~~l~~~iPp~v~G~~i~~IGl~l~~~~~~~~~g~~~~~~~~ 144 (406)
T TIGR03173 80 -------------GGLGAIFGAVIVAGLFVILLA--PFFSKLVRFFPPVVTGTVITLIGLSLMPVAINWAAGGAGAPDFG 144 (406)
T ss_pred -------------hhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHhccCCCccccc
Confidence 479999999999999999999 47899999999999999999999999988876542
Q ss_pred --cchhhHHHHHHHHHHHHHHhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccccCccCcCCCC
Q 010715 201 --NCVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTDRSYLLSSA 278 (503)
Q Consensus 201 --~~~~v~l~~l~l~v~~~~~~~~~~~~~~~~~r~~avLigivvG~i~a~~lg~~g~~~~~~~~~~~~~~~d~~~~i~~a 278 (503)
.++.+++.++++++++.++.| +++|++++++++++||++++.++. .|++. +.++
T Consensus 145 ~~~~~~l~l~~l~~~il~~~~~~-------~~~~~~aiLi~ivvg~iva~~~g~----------------~~~~~-i~~~ 200 (406)
T TIGR03173 145 SPQNLGLALLTLVIILLLNRFGK-------GFLRSIAVLLGLVVGTIVAAALGM----------------VDFSG-VAEA 200 (406)
T ss_pred chHHHHHHHHHHHHHHHHHHHhh-------hHHHHhHHHHHHHHHHHHHHHhcC----------------CCchh-hccC
Confidence 134577777776666665554 468899999999999999998863 24433 5678
Q ss_pred CcccccccccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHhhhCCCCCCcccccchhhhhhhHHHHhhhhCCCcccc
Q 010715 279 PWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTT 358 (503)
Q Consensus 279 p~~~~P~~~~~g~P~f~~~~il~~l~~~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~i~adGl~silagl~G~~~~tt 358 (503)
||+++|.+++|++|+||+..+.+++.+++++++|++|++.++++..+++. +++++||++.+||++|+++|++|+.|.|+
T Consensus 201 ~~~~~P~~~~~~~P~f~~~~~~~~~~~~lv~~~esig~~~a~~~~~g~~~-~~~~~~~~l~~~Gi~~i~aglfG~~p~t~ 279 (406)
T TIGR03173 201 PWFALPTPFHFGAPTFDLVAILTMIIVYLVSMVETTGDFLALGEITGRPI-TEKDLAGGLRADGLGSALGGLFNTFPYTS 279 (406)
T ss_pred CeeeCCCCCcCCCCeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CchhccchHHhccHHHHHHHHhCCCCCcc
Confidence 99999998889999999999999999999999999999999999987543 45789999999999999999999999998
Q ss_pred ccccccchhcccCCCcchHHHHHHHHHHHHHHhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhhcCCCCccchhh
Q 010715 359 ASVENVGLLGLTHIGSRRVVQISTAFMIFFSIFGKFGAFFASIPLPIFAAIYCVLLGIVAAVGITFIQFANNNSMRNIYI 438 (503)
Q Consensus 359 ~~~~n~G~i~~Tg~~SR~~~~~ag~~Lillg~~pk~~alla~IP~~Vlgg~livlf~~i~~~Gi~~l~~~~~~~~Rn~~I 438 (503)
|+ ||+|+++.||++||++.+++++++++++++||++++++.||.||+||+++++|+++..+|+|.+++.|+|+|||++|
T Consensus 280 ~~-~~~~~~~~tg~~sr~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l~~~~~i~~~g~~~l~~~~~~~~rn~~i 358 (406)
T TIGR03173 280 FS-QNVGLVQLTGVKSRYVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGLVMFGMVAASGIRILSKVDFDRRRNLLI 358 (406)
T ss_pred hh-hhHHHHHHhCCCchHhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhCcccCcceehh
Confidence 87 99999999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred HHHHHHHHhh---hhHHhhhcccCCCCCCccccchhhHHHHHHHhhhhHHHHHHHHHHhhhcc
Q 010715 439 LGLSLFLGIS---IPQYFASKTTEDGHGPVRTGGGWVSCSEKKLYFLFSFFIFGCIVCYFVLQ 498 (503)
Q Consensus 439 vg~sl~~Gl~---~P~~~~~~~~~~~~~~~~~~~~~~~~i~~vl~~~~~~~~~~~~~~~~~~~ 498 (503)
+|+++.+|++ .|++++++|+ .+..++.|...++...++++|++||
T Consensus 359 ~g~~~~~g~~~~~~p~~~~~~p~---------------~~~~~~~~~~~~g~~~ai~l~~~~p 406 (406)
T TIGR03173 359 VAVSLGLGLGPTVVPEFFSQLPA---------------WAQTLFSSGIAVGAISAILLNLLFN 406 (406)
T ss_pred hHHHHHHHHHHHhhHHHHHHChH---------------HHHHHHhCcHHHHHHHHHHHHhhcC
Confidence 9999999997 5999998863 3344566888899999999999998
No 8
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=100.00 E-value=7.4e-63 Score=518.51 Aligned_cols=372 Identities=33% Similarity=0.542 Sum_probs=282.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHH-hcCCcceeeccchhhHHHHHHHH
Q 010715 48 PQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTL-FGTRLPTVMGPSAAFTLPVLSII 126 (503)
Q Consensus 48 ~~~illGlQh~l~m~~~~i~~P~ila~a~gl~~~~~~~li~a~l~~sGI~Tllq~~-~G~rlPiv~Gpsfa~v~~~~~i~ 126 (503)
+|++++|+||+++|++.++++|.++++++|+ +++++++++++++++|++|++|++ +|+|+|+++|+|+.++.......
T Consensus 1 ~~~i~~glQ~~l~m~~~~iv~P~il~~~~g~-~~~~~~li~at~l~sgi~Tllq~~~~g~~lpl~~G~s~~~~~~~~~~~ 79 (389)
T PF00860_consen 1 GKEILLGLQHFLAMFYIIIVVPLILAAAFGL-DADTAALISATFLVSGIATLLQGLPAGHRLPLVPGPSFAFIFAFMIVI 79 (389)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTTTS------------HHHHHHHHHHHHHHHHHHTTT-----EEE-GGGHHHHHGGG
T ss_pred CccHHHHHHHHHHHHHHHHHhHHHHhhcccc-cchhhHHHHHHHHHHHHHHHHHHhcCCCceecccccchhhhhhhhccc
Confidence 4899999999999999999999999999899 777889999999999999999999 89999999999999998332221
Q ss_pred hhcCCCCCCCcchhhhccHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhcCCceehHHHHHHHHHhhhhhccccccch---
Q 010715 127 NDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLLGNCV--- 203 (503)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~Ga~liaGlv~illg~~g~~~~l~~~fpp~V~G~~i~lIGlsL~~~g~~~~~~~~--- 203 (503)
.. .+++.+++++++|+++++|++++++++++.++|++|+|||.|.|.++++||+++.+.++++++.++
T Consensus 80 g~---------~~~~~~~~~~~~g~~~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~~IGl~L~~~~~~~~~~~~~~~ 150 (389)
T PF00860_consen 80 GM---------AESGGYGLQAALGAVLISGILFILLGLTGLRKRLRRLFPPVVKGAVVLLIGLSLAPIGLKNAGGIWGNP 150 (389)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHTT-SH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS---B
T ss_pred cc---------ccchhhchhhhhhHHHHHHHHHHHHHHhchHHHHHHHhChhheEeeEeeehhhhhhhHhhccccccccc
Confidence 11 023457899999999999999999999999999999999999999999999999999987765332
Q ss_pred -----------hhHHHHHHHHHHHHHHhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccccCcc
Q 010715 204 -----------EIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTDRS 272 (503)
Q Consensus 204 -----------~v~l~~l~l~v~~~~~~~~~~~~~~~~~r~~avLigivvG~i~a~~lg~~g~~~~~~~~~~~~~~~d~~ 272 (503)
..+..++...+.++.+. ++++|++++++|+++||++++.++.. |++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ailigi~~g~i~~~~~g~~----------------~~~ 207 (389)
T PF00860_consen 151 DGLLVGDGKNLGLAVLTLLFILLLSLFL-------KGFLRKGAILIGIIAGWIVAAILGVV----------------DFS 207 (389)
T ss_dssp TT-B---HHHHHHHHHHHHHHHHHHHSS-------STTTTTHHHHHHHHHHHHHHHHHHHT----------------TSS
T ss_pred cccccccccccccccccchhhhhhhhhh-------hhhcccccchhhhhhhhhhhhccccc----------------ccC
Confidence 23344444444444443 45688999999999999999999843 444
Q ss_pred CcCCCCCcccccccccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHhhhCCCCCCcccccchhhhhhhHHHHhhhhC
Q 010715 273 YLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFG 352 (503)
Q Consensus 273 ~~i~~ap~~~~P~~~~~g~P~f~~~~il~~l~~~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~i~adGl~silagl~G 352 (503)
+.+.++||+++|++++|++|+||+..+++++..++++++|++||+.+++|.++++++++++++|++.+||++++++|++|
T Consensus 208 ~~~~~~~~~~~p~~~~~g~p~f~~~~i~~~~~~~lv~~~es~G~~~a~~~~~~~~~~~~~~~~r~l~~dg~~~~l~gl~G 287 (389)
T PF00860_consen 208 PSVSSAPWFSLPSPFPFGWPSFDPGAILTFLIFALVAMFESIGTIVAVARIAGKDDPRPPRIRRGLLADGLGTILAGLFG 287 (389)
T ss_dssp H-HHHS-SS--------------HHHHHHHTHHHHHHHHHHHHHHHHHHHHHTS-TCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccccccccHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCCccchhhcccceeeeeeeeechhhc
Confidence 22678999999999999999999999999999999999999999999999999877768999999999999999999999
Q ss_pred CCccccccccccchhcccCCCcchHHHHHHHHHHHHHHhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhhcCCCC
Q 010715 353 SVVGTTASVENVGLLGLTHIGSRRVVQISTAFMIFFSIFGKFGAFFASIPLPIFAAIYCVLLGIVAAVGITFIQFANNNS 432 (503)
Q Consensus 353 ~~~~tt~~~~n~G~i~~Tg~~SR~~~~~ag~~Lillg~~pk~~alla~IP~~Vlgg~livlf~~i~~~Gi~~l~~~~~~~ 432 (503)
+.|.|+|+ ||+|.++.||++|||++..+++++++++++||++++++.||.||+||++++++|.++++|+|++++.|+||
T Consensus 288 ~~~~t~~~-en~g~i~~t~v~Sr~~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~~lv~~g~i~~~gi~~i~~~~~~~ 366 (389)
T PF00860_consen 288 TSPTTTYS-ENAGGIAATGVASRRVGLTAGVILILFGLSPKFAPLFASIPSPVIGGPLLVLFGMIMMSGIRNIDWVDLDS 366 (389)
T ss_dssp ---EEE-H-HHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHTTS-S
T ss_pred CCCCcccc-ccchhhhhhccccceeeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhHhheecccCc
Confidence 99999998 99999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccchhhHHHHHHHHhhhhHHh
Q 010715 433 MRNIYILGLSLFLGISIPQYF 453 (503)
Q Consensus 433 ~Rn~~Ivg~sl~~Gl~~P~~~ 453 (503)
+||.+++++++.+|++++.+.
T Consensus 367 ~r~~~iv~~~l~~g~~i~~~p 387 (389)
T PF00860_consen 367 ARNAFIVGLSLPLGLSIAFGP 387 (389)
T ss_dssp HHHHHHHHHHHHHHHH-----
T ss_pred cccHHHHHHhHHHHHHHhccC
Confidence 999999999999999987653
No 9
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=99.97 E-value=2.9e-28 Score=253.52 Aligned_cols=349 Identities=14% Similarity=0.166 Sum_probs=258.3
Q ss_pred cccccceeccCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCccee
Q 010715 33 QLQQLQYCIHSNPP-WPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTV 111 (503)
Q Consensus 33 ~~~~~~y~v~~~pp-~~~~illGlQh~l~m~~~~i~~P~ila~a~gl~~~~~~~li~a~l~~sGI~Tllq~~~G~rlPiv 111 (503)
+.-|+.|+++|+.. .++|+++|++++++|.|.+.++|.+++++ |+| ...+..++++.++++|+++.++ +|+|+.
T Consensus 4 ~~~~~~F~l~~~~t~vrtEiiAGlTTFltM~YIl~VnP~IL~~a-g~~---~~av~~AT~l~a~~gs~~mgl~-An~P~a 78 (436)
T COG2252 4 GDLDRFFKLKEHGTTVRTEVIAGLTTFLTMAYIVFVNPQILGAA-GMP---VGAVFVATCLAAAIGSIAMGLY-ANLPIA 78 (436)
T ss_pred hHHHHHhCccccCchHHHHHHHHHHHHHHHHHhheecHHHHHhc-CCC---chhHHHHHHHHHHHHHHHHHHH-HcCchh
Confidence 44578899999987 89999999999999999999999999986 777 4788899999999999999999 799999
Q ss_pred eccchhhHHH-HHHHHhhcCCCCCCCcchhhhccHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhcCCceehHHHHHHHHH
Q 010715 112 MGPSAAFTLP-VLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLG 190 (503)
Q Consensus 112 ~Gpsfa~v~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ga~liaGlv~illg~~g~~~~l~~~fpp~V~G~~i~lIGls 190 (503)
++|....-.. ..++...++ .+||+++|+++++|+++++++++|+|+|++|.+|....-.+...||+.
T Consensus 79 lapgmglnAfFaftvv~~~g------------i~wq~AL~aVF~sGiif~ils~t~iR~~ii~~IP~~lk~ai~aGIGlF 146 (436)
T COG2252 79 LAPGMGLNAFFAFTVVLGMG------------LSWQVALGAVFLSGIIFLLLSLTGIREWIINAIPRSLKLAIGAGIGLF 146 (436)
T ss_pred hcchhhHHHHHHHHHHHhcC------------CcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 9998321110 122233333 369999999999999999999999999999999975433333344443
Q ss_pred hhhhhccccc----------------c-chhhHHHHHHHHHHHHHHhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhh
Q 010715 191 LFMRGFPLLG----------------N-CVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAA 253 (503)
Q Consensus 191 L~~~g~~~~~----------------~-~~~v~l~~l~l~v~~~~~~~~~~~~~~~~~r~~avLigivvG~i~a~~lg~~ 253 (503)
+...++++.+ + ...+++..+++++.+ +.|++ ..+++++++..++++++++..
T Consensus 147 ia~IgL~~~Givv~~~~tlv~LG~~~~p~vll~i~G~~l~~~L--~~~~i---------~Gaili~i~~~t~~g~~~g~~ 215 (436)
T COG2252 147 IALIGLKNAGIVVANPATLVALGDFTSPGVLLAILGLLLIIVL--VSRKI---------KGAILIGILVTTILGIILGID 215 (436)
T ss_pred HHHHHHhhCCeEEecCcceEEeecCCCchHHHHHHHHHHHHHH--HHhhc---------cHhhhHHHHHHHHHHHHhccc
Confidence 3333333221 1 234566666666555 55554 689999999999999988643
Q ss_pred cCCCCCCcccccccccCccCcCCCCCcccccccccccccc--cchhHHHHHHHHHHhhhhhhhHHHHHHHhhhCCCCC--
Q 010715 254 GAYNNVPEQTKLSCRTDRSYLLSSAPWIKVPYPFQWGTPI--FRASHVFGMIGAALVTSAESTGTFIAASRFAGATAP-- 329 (503)
Q Consensus 254 g~~~~~~~~~~~~~~~d~~~~i~~ap~~~~P~~~~~g~P~--f~~~~il~~l~~~lv~~~esiG~~~a~~~~~~~~~~-- 329 (503)
. .+ .+....-|.. .|...+.+... ..++.+...+...+++.+|++|++.++++.++..++
T Consensus 216 ~--~~-------------~~~~~~~p~~-~~~~~~~d~~~~~~~~~~~~~if~f~~~~~FD~~GTl~gv~~~ag~~~~~g 279 (436)
T COG2252 216 V--HF-------------GGLVGAPPSL-SPIFGQLDLSGNLSLAAFAPVIFTFFFVDLFDTLGTLIGVASKAGLLDKNG 279 (436)
T ss_pred c--cc-------------cccccCCCCc-cchhhHhhhccchhhHHHHHHHHHHHHHHHhcchHHHHHHHHhcCCcCCCC
Confidence 1 00 0001111100 01111222111 123444566889999999999999999999885432
Q ss_pred CcccccchhhhhhhHHHHhhhhCCCccccccccccchhcccCCCcchHHHHHHHHHHHHHHhhhHHHHhhhCCcchhhHH
Q 010715 330 PAHVLSRSIGLQGIGMLVEGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMIFFSIFGKFGAFFASIPLPIFAAI 409 (503)
Q Consensus 330 ~~~~~~r~i~adGl~silagl~G~~~~tt~~~~n~G~i~~Tg~~SR~~~~~ag~~Lillg~~pk~~alla~IP~~Vlgg~ 409 (503)
+.++.+|.+.+|++++++++++|+.+.++|. |+...++..|++.-.....+.++++.+.+.| +...+|..+.+++
T Consensus 280 ~~~~~~~al~~D~v~t~~ga~~GtS~~t~yI-ESaaGva~GgrTGltavv~g~lFl~~lf~~P----l~~~vP~~Atapa 354 (436)
T COG2252 280 KMPRIGKALLADSVATVVGALFGTSTVTAYI-ESAAGVAAGGRTGLTAVVTGLLFLLSLFFSP----LAALVPGYATAPA 354 (436)
T ss_pred CccccchHHHHhHHHHHHHHhcCCcchhhhh-hcccccccccccccHHHHHHHHHHHHHHHHH----HHHhCcHhhhhHH
Confidence 3468999999999999999999999999998 9999999999999999999999998877767 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCcc
Q 010715 410 YCVLLGIVAAVGITFIQFANNNSMR 434 (503)
Q Consensus 410 livlf~~i~~~Gi~~l~~~~~~~~R 434 (503)
+++ .|..+.++ +++.||+|..
T Consensus 355 Li~-vG~lM~~~---v~~id~~d~~ 375 (436)
T COG2252 355 LII-VGALMLSS---VKQIDWSDFT 375 (436)
T ss_pred HHH-HHHHHHhh---hccCCchhhh
Confidence 987 35555444 4666666544
No 10
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=99.92 E-value=2.2e-22 Score=209.01 Aligned_cols=317 Identities=19% Similarity=0.235 Sum_probs=231.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCcceeeccchhhHHHHHHHHhh
Q 010715 49 QALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIIND 128 (503)
Q Consensus 49 ~~illGlQh~l~m~~~~i~~P~ila~a~gl~~~~~~~li~a~l~~sGI~Tllq~~~G~rlPiv~Gpsfa~v~~~~~i~~~ 128 (503)
..+..|+-.+++-+.+.+++-+--+++.|+|++|.+.++++.++.+|++|++|+++ +|+|+++++|. .-...+... .
T Consensus 22 s~~~aG~va~lvg~~~~~~iv~~a~~~~g~s~aq~~swl~a~~~~~Gl~ti~lS~~-~r~Pi~~awSt-PGaAll~~~-~ 98 (395)
T TIGR00843 22 PTLIAGFLAVLIGYAGPAAIFFQAAIKAGASTAMIIGWITAIGIAAAVSGIFLSIR-FKTPVLTAWSA-PGAALLVTG-F 98 (395)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCeeeecCc-hHHHHHHHh-c
Confidence 46788999999988888777666667799999999999999999999999999988 79999999992 222222221 1
Q ss_pred cCCCCCCCcchhhhccHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhcCCceehHHHHHHHHHhhhhhccccccchhhHHH
Q 010715 129 YNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLLGNCVEIGLP 208 (503)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~Ga~liaGlv~illg~~g~~~~l~~~fpp~V~G~~i~lIGlsL~~~g~~~~~~~~~v~l~ 208 (503)
.+ .++.++.|+.+++|++.+++|++|+++|++|++|+.+...++..+.+......+....+.+.++..
T Consensus 99 ~~------------~~~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amLAGIlL~f~l~~~~a~~~~pll~~~ 166 (395)
T TIGR00843 99 PG------------ISLNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAMLAGILFQFGLGAFAALDGLFLICFS 166 (395)
T ss_pred CC------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 11 469999999999999999999999999999999999999888777666544444444444444432
Q ss_pred HHHHHHHHHHHhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccccCccCcCCCCCccccccccc
Q 010715 209 MLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTDRSYLLSSAPWIKVPYPFQ 288 (503)
Q Consensus 209 ~l~l~v~~~~~~~~~~~~~~~~~r~~avLigivvG~i~a~~lg~~g~~~~~~~~~~~~~~~d~~~~i~~ap~~~~P~~~~ 288 (503)
.++..+ .. +|+.+++++++++++|.++++..+.. |..+ .+. . +.-| .
T Consensus 167 mll~~l----~~-------~r~~Pr~avl~aLlvG~iva~~~G~~----------------~~~~-~~~-~-l~~p---~ 213 (395)
T TIGR00843 167 MLLCWL----AS-------KAFAPRYAMIAALICGIAFSFALGDM----------------NPTD-LDF-K-IALP---Q 213 (395)
T ss_pred HHHHHH----HH-------HHhcchHHHHHHHHHHHHHHHHhcCC----------------Cccc-ccc-c-cccc---e
Confidence 222221 22 23567899999999999999877532 1111 110 0 2223 5
Q ss_pred ccccccchhHHHHH-HHHHHhhhhhhhHHHHHHHhhhCCCCCCcccccchhhhhhhHHHHhhhhCCCc------cccccc
Q 010715 289 WGTPIFRASHVFGM-IGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVV------GTTASV 361 (503)
Q Consensus 289 ~g~P~f~~~~il~~-l~~~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~i~adGl~silagl~G~~~------~tt~~~ 361 (503)
|.+|+||+...+.. ++.+++++....-.-.++.|.++++.+ .|+-+.++|++|+++++||+.+ .++-.
T Consensus 214 ~~~P~fs~~a~~~l~lPl~~vtm~~qnlpgiavl~aaGy~~p----~~~~~~~tGl~sll~ApfGg~~~nlaaitaAic- 288 (395)
T TIGR00843 214 FIAPDFSFAHSLNLALPLFLVSLAGQFAPGIAALKAAGYNAP----AKPIIAAAGLAALFAAFAGGISIGIAAITAAIC- 288 (395)
T ss_pred eeCCCCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHcCCCCC----chHHHHHHHHHHHHHhccCCchhhhhHHhHHHh-
Confidence 67789988877654 678888887776666778888876533 5899999999999999999997 22111
Q ss_pred cccchhcccCCCcch--HHHHHHHHHHHHHHh-hhHHHHhhhCCcchhhHH-HHHHHHHHHHHH
Q 010715 362 ENVGLLGLTHIGSRR--VVQISTAFMIFFSIF-GKFGAFFASIPLPIFAAI-YCVLLGIVAAVG 421 (503)
Q Consensus 362 ~n~G~i~~Tg~~SR~--~~~~ag~~Lillg~~-pk~~alla~IP~~Vlgg~-livlf~~i~~~G 421 (503)
.|- ..-+..+|| +.+.+|++.+++|++ +.+..+++.+|.+.+..+ -+-+++.+..+=
T Consensus 289 --~G~-~ah~d~~rR~~a~i~~Gv~yll~glfag~i~~l~~~~P~~li~~laGlAll~~~~~~l 349 (395)
T TIGR00843 289 --MGK-DAHEDKDKRWIAAAAAGIFYLLAGLFAGAITALFAALPKELIAALAGLALLGAIAGNI 349 (395)
T ss_pred --cCc-ccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Confidence 111 112324444 478999999999999 889999999999998876 344666665433
No 11
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=99.88 E-value=2.5e-20 Score=203.15 Aligned_cols=317 Identities=20% Similarity=0.274 Sum_probs=232.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCcceeeccchhhHHHHHH
Q 010715 47 WPQALLLAFQHYIVMLGTTVLISSTLVP--LMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLS 124 (503)
Q Consensus 47 ~~~~illGlQh~l~m~~~~i~~P~ila~--a~gl~~~~~~~li~a~l~~sGI~Tllq~~~G~rlPiv~Gpsfa~v~~~~~ 124 (503)
++..+++|+.-.. +.+|.-++. +.|.|+ .+.++++-++.++-++||.+-=.+.||..++...+..
T Consensus 21 l~~Dl~AGltva~------valP~ama~a~~aGv~p-------~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~ 87 (554)
T COG0659 21 LRGDLLAGLTVAA------VALPLAMAFAIAAGVPP-------EAGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAA 87 (554)
T ss_pred hHHHHHHHHHHHH------HHhHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHcCCccceeccchhhHHHHHH
Confidence 5678999998654 445665554 389998 5999999999999999976656788998877776666
Q ss_pred HHhhcCCCCCCCcchhhhccHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhcCCceehHHHHHHHHHhhhhhcccc-----
Q 010715 125 IINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLL----- 199 (503)
Q Consensus 125 i~~~~~~~~~~~~~~~~~~~~~~~~Ga~liaGlv~illg~~g~~~~l~~~fpp~V~G~~i~lIGlsL~~~g~~~~----- 199 (503)
+..+.. +++++.+.-+.+++|++|+++|++|+ +++.|++|+.|+-.++..||+.++..+++..
T Consensus 88 ~i~~~~-----------~~g~~~~~~~tllaGv~~i~~G~lRL-G~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~ 155 (554)
T COG0659 88 VIASLV-----------ETGLALAFLATLLAGVFQILLGLLRL-GRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLAS 155 (554)
T ss_pred HHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 654211 15789999999999999999999998 9999999977777788889988776654321
Q ss_pred -cc----------------ch---hhHHHHHHHHHHHHHHhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCC
Q 010715 200 -GN----------------CV---EIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNV 259 (503)
Q Consensus 200 -~~----------------~~---~v~l~~l~l~v~~~~~~~~~~~~~~~~~r~~avLigivvG~i~a~~lg~~g~~~~~ 259 (503)
.+ +| .++..++.+++. .+++ ..|.++.++++++++.+++.+.... .
T Consensus 156 ~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~l~il~~----~~~~------~~~~P~~liaiv~~t~i~~~~~~~~---~- 221 (554)
T COG0659 156 KVSGFWAKVSALFTVLLTINLATLLLGLLTLAILLF----LPRL------TPRIPSPLIALVLGTLIVWIFPLDS---L- 221 (554)
T ss_pred cccchHHHHHHHHHhcccccHHHHHHHHHHHHHHHH----ccch------hhhCCcHHHHHHHHHHHHHHhcCCc---h-
Confidence 10 11 223333333332 2322 1346778999999999998885421 0
Q ss_pred CcccccccccC--ccCcCCCCCcccccccccccccccch----hHHHHHHHHHHhhhhhhhHHHHHHHhhhCCCCCCccc
Q 010715 260 PEQTKLSCRTD--RSYLLSSAPWIKVPYPFQWGTPIFRA----SHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHV 333 (503)
Q Consensus 260 ~~~~~~~~~~d--~~~~i~~ap~~~~P~~~~~g~P~f~~----~~il~~l~~~lv~~~esiG~~~a~~~~~~~~~~~~~~ 333 (503)
+.+ ..+.-+..| +|+.|.+++ ..+...+.++++.++|++.+..+.++..++ +++
T Consensus 222 --------~~G~i~~~lp~~~~--------~~~~P~~~~~~~~~l~~~al~la~lg~iesllta~~~~~~~~~----~~d 281 (554)
T COG0659 222 --------RYGEIPGSLPSGLP--------HFRLPNVSLSLLLALLPYALALALLGLLESLLTAVSFDGMTGT----KHD 281 (554)
T ss_pred --------hcccCcccCCcCCC--------cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCC
Confidence 111 111111233 344455544 344556789999999999999999888764 477
Q ss_pred ccchhhhhhhHHHHhhhhCCCccccccccccchhcccCCCcchHHHHHHHHHHHHHHhhhHHHHhhhCCcchhhHHHHH-
Q 010715 334 LSRSIGLQGIGMLVEGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMIFFSIFGKFGAFFASIPLPIFAAIYCV- 412 (503)
Q Consensus 334 ~~r~i~adGl~silagl~G~~~~tt~~~~n~G~i~~Tg~~SR~~~~~ag~~Lillg~~pk~~alla~IP~~Vlgg~liv- 412 (503)
.||++.++|++|+.+|+||++|.|... .+......+|.+||.+.++++++++++-++ ++.++..||.+++++++++
T Consensus 282 ~nrELiaqGiaNi~sglfgg~p~~g~~-srS~~nv~sGarT~lsgi~~a~~lll~l~~--~~~~~~~IP~a~Laavli~v 358 (554)
T COG0659 282 SNRELIAQGIANIASGLFGGIPATGSI-SRSAINIKSGARTRLSGIIHAALLLLLLLF--LAPLVSYIPLAALAAVLILV 358 (554)
T ss_pred CCHHHHHhhHHHHHHHHhCCccccchh-HHHHHHHHhCCcChHHHHHHHHHHHHHHHH--HHHHHHhCcHHHHHHHHHHH
Confidence 899999999999999999999999998 666666778999999999999988776554 6889999999999999875
Q ss_pred HHHHHHHHHHHHH
Q 010715 413 LLGIVAAVGITFI 425 (503)
Q Consensus 413 lf~~i~~~Gi~~l 425 (503)
.+.++....++.+
T Consensus 359 ~~~l~~~~~~~~~ 371 (554)
T COG0659 359 GWGLLDWSLLKPL 371 (554)
T ss_pred HHHhccHHHHHHH
Confidence 5555555555553
No 12
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=99.85 E-value=1e-18 Score=178.96 Aligned_cols=317 Identities=22% Similarity=0.273 Sum_probs=230.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCcceeeccchhhHHHHHHHHhh
Q 010715 49 QALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIIND 128 (503)
Q Consensus 49 ~~illGlQh~l~m~~~~i~~P~ila~a~gl~~~~~~~li~a~l~~sGI~Tllq~~~G~rlPiv~Gpsfa~v~~~~~i~~~ 128 (503)
.++..|+--+++-+.+.+.+-+-.+++.|++++|...++.+..+..|+.++.-++. +|.|++.+.|..-.....+. .
T Consensus 6 s~~~aG~va~lvg~tg~~aiv~qaa~a~g~s~~q~~SWl~al~~~~Gl~~i~lSl~-yR~Pi~~AWStPGaAlL~~~--~ 82 (378)
T PF03594_consen 6 SAVSAGFVAVLVGYTGPVAIVLQAAQAAGASPAQIASWLFALYLGMGLTSILLSLR-YRMPIVTAWSTPGAALLATS--L 82 (378)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCchhhcchHHHHHHHHh--c
Confidence 56788888888888887777666677799999999999999999999999999988 89999887774332222221 1
Q ss_pred cCCCCCCCcchhhhccHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhcCCceehHHHHHHHHHhhhhhccccccchhhHHH
Q 010715 129 YNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLLGNCVEIGLP 208 (503)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~Ga~liaGlv~illg~~g~~~~l~~~fpp~V~G~~i~lIGlsL~~~g~~~~~~~~~v~l~ 208 (503)
.+ .+++++.|+.+++|++.++.|.+|+++|+.|.+|+.+..-++..+-+..--..++...+++.+...
T Consensus 83 ~~------------~~~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLAGvLl~f~l~~f~a~~~~P~l~~~ 150 (378)
T PF03594_consen 83 PG------------YSFAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLAGVLLPFGLAAFTALQADPLLVGP 150 (378)
T ss_pred cC------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 12 479999999999999999999999999999999987766666554444433344444455555555
Q ss_pred HHHHHHHHHHHhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccccCccCcCCCCCccccccccc
Q 010715 209 MLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTDRSYLLSSAPWIKVPYPFQ 288 (503)
Q Consensus 209 ~l~l~v~~~~~~~~~~~~~~~~~r~~avLigivvG~i~a~~lg~~g~~~~~~~~~~~~~~~d~~~~i~~ap~~~~P~~~~ 288 (503)
.++..++..+ +.++++++..+++|.+++...+.. +... .+ ..++.| .
T Consensus 151 ml~~~l~~~r-----------~~pr~av~~al~~g~~~a~~~g~~----------------~~~~----~~-~~~~~p-~ 197 (378)
T PF03594_consen 151 MLAVFLLARR-----------FSPRYAVLAALVAGVAVAALTGQL----------------HPSA----LQ-LSLAHP-V 197 (378)
T ss_pred HHHHHHHHHH-----------HcchhHHHHHHHHHHHHHHhcCCC----------------Cccc----cc-ccccee-E
Confidence 5544443322 355789999999999988765432 1111 11 133333 6
Q ss_pred ccccccchhHHHHH-HHHHHhhhhhhhHHHHHHHhhhCCCCCCcccccchhhhhhhHHHHhhhhCCCccccccccccchh
Q 010715 289 WGTPIFRASHVFGM-IGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTTASVENVGLL 367 (503)
Q Consensus 289 ~g~P~f~~~~il~~-l~~~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~i~adGl~silagl~G~~~~tt~~~~n~G~i 367 (503)
|-.|+||++.++.+ ++.+++++......-.++-|..+.+ ...|+-+...|++|++.+.||+.+.+-.. -.+.+-
T Consensus 198 ~~~P~Fs~~a~v~lalPL~ivtmasQnlpG~aVL~a~GY~----~p~~~~~~~tGl~s~l~ApfGg~~~nlAa-itaAIc 272 (378)
T PF03594_consen 198 FTTPEFSWSALVSLALPLFIVTMASQNLPGIAVLRAAGYQ----PPVNPLITVTGLASLLAAPFGGHAVNLAA-ITAAIC 272 (378)
T ss_pred EECCcccHHHHHHHHHHHHHHHHHhcchHHHHHHHHcCCC----CCchHHHHHHHHHHHHHhhhchhhhHHHH-HHHHHH
Confidence 77899999998876 6899999988887778887877653 45789999999999999999998643221 222211
Q ss_pred cc---cCCCcc-h-HHHHHHHHHHHHHHh-hhHHHHhhhCCcchhhHH-HHHHHHHHH
Q 010715 368 GL---THIGSR-R-VVQISTAFMIFFSIF-GKFGAFFASIPLPIFAAI-YCVLLGIVA 418 (503)
Q Consensus 368 ~~---Tg~~SR-~-~~~~ag~~Lillg~~-pk~~alla~IP~~Vlgg~-livlf~~i~ 418 (503)
.- .+..+| | +..++|++.+++|++ +.+.+++...|.+.+..+ -+-+++.+.
T Consensus 273 ~g~eah~dp~rRy~Aav~~Gv~yll~Gl~a~~~v~l~~~lP~~li~~lAGLALlg~l~ 330 (378)
T PF03594_consen 273 AGPEAHPDPSRRYIAAVAAGVFYLLFGLFAAALVALFAALPPALIAALAGLALLGTLG 330 (378)
T ss_pred cCCccCCCcccchHHHHHHhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 11 122334 4 479999999999999 568899999999988776 334555554
No 13
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=99.81 E-value=1.8e-17 Score=182.38 Aligned_cols=317 Identities=20% Similarity=0.223 Sum_probs=216.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCcceeeccchhhHHHHHH
Q 010715 47 WPQALLLAFQHYIVMLGTTVLISSTLVPL--MGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLS 124 (503)
Q Consensus 47 ~~~~illGlQh~l~m~~~~i~~P~ila~a--~gl~~~~~~~li~a~l~~sGI~Tllq~~~G~rlPiv~Gpsfa~v~~~~~ 124 (503)
+...++.|+.-.+ +.+|.-++.+ +|+++ ...++.+.+..++.++||+.--++.||..+......+
T Consensus 14 l~~Di~aGltv~~------~~iP~~~ayA~laglpp-------~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~ 80 (563)
T TIGR00815 14 FKGDLMAGLTVGI------LLIPQAMAYAILAGLSP-------IYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGS 80 (563)
T ss_pred hhhHHHHHHHHHH------HHHHHHHHHHHHcCCCc-------hhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHH
Confidence 5678999998654 4456666554 79998 5789999999999999998777888998655544444
Q ss_pred HHhhcCCCCCCCcchhhhccHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhcCCceehHHHHHHHHHhhhhhcccc-----
Q 010715 125 IINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLL----- 199 (503)
Q Consensus 125 i~~~~~~~~~~~~~~~~~~~~~~~~Ga~liaGlv~illg~~g~~~~l~~~fpp~V~G~~i~lIGlsL~~~g~~~~----- 199 (503)
+..+++..+. ++ .+..+.+....+++|++|+++|++|+ +++.+++|..|+..++..+|+.++..+++.+
T Consensus 81 ~v~~~~~~~~--~~---~~~~~~a~~l~~l~Gi~~~~~g~lrl-G~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~G~~~ 154 (563)
T TIGR00815 81 VIARVGLQYL--FD---CDAIRLAFTLTLLAGIFQVILGLLRL-GFLIEFLSHAVISGFMTGAAITIGLSQLKGLLGISI 154 (563)
T ss_pred HHHHhcCCCC--cc---cHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4444432111 10 13456667888999999999999998 9999999987777788888887764433211
Q ss_pred ---c---------------c----chh---hHHHHHHHHHHHHHHhhhcccc-chhh-hhhhHHHHHHHHHHHHHHHHHh
Q 010715 200 ---G---------------N----CVE---IGLPMLVLLVICQQYLKRLHPK-AHFI-VERFALLFCIGVVWAFAAILTA 252 (503)
Q Consensus 200 ---~---------------~----~~~---v~l~~l~l~v~~~~~~~~~~~~-~~~~-~r~~avLigivvG~i~a~~lg~ 252 (503)
. + +|. +++.+++++. ..|++.++ ++++ ...+..++.+++++++++.+..
T Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~l~----~~~~~~~~~~~~~~~~~p~~li~vi~~~~~~~~~~~ 230 (563)
T TIGR00815 155 FNTRTDTLGVVISTWAGLPNTHNWNWCTLVIGLVLLLFLL----YTKKLGKRNKKLLFAPAVAPLLVVILATLAVTIGLH 230 (563)
T ss_pred CCCCCChHHHHHHHHHHhhhccccchHHHHHHHHHHHHHH----HHHHhhhhccchhcccccHHHHHHHHHHHHHHHHcc
Confidence 0 0 222 2222222222 22333111 1111 1235678888888887665521
Q ss_pred hcCCCCCCcccccccccCccCcCCCCCcccccccccccccccchhH----HHHHHHHHHhhhhhhhHHHHHHHhhhCCCC
Q 010715 253 AGAYNNVPEQTKLSCRTDRSYLLSSAPWIKVPYPFQWGTPIFRASH----VFGMIGAALVTSAESTGTFIAASRFAGATA 328 (503)
Q Consensus 253 ~g~~~~~~~~~~~~~~~d~~~~i~~ap~~~~P~~~~~g~P~f~~~~----il~~l~~~lv~~~esiG~~~a~~~~~~~~~ 328 (503)
. .. ... .+.+-|- .+| .+++|.+|+.. +...+.+++++++|++....+.++..++
T Consensus 231 ~----~~--------~~~---~~g~ip~-g~p---~~~~~~~~~~~~~~l~~~a~~ia~v~~~e~l~~a~~~~~~~~~-- 289 (563)
T TIGR00815 231 K----KQ--------GVS---ILGHIPS-GLS---FFPPITLDWELLPTLAPDAIAIAIVGLIESIAIARSFARMTGY-- 289 (563)
T ss_pred C----CC--------CeE---EEeecCC-CCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--
Confidence 1 00 011 1111110 122 23445555443 3445789999999999999988877653
Q ss_pred CCcccccchhhhhhhHHHHhhhhCCCccccccccccchhcccCCCcchHHHHHHHHHHHHHHhhhHHHHhhhCCcchhhH
Q 010715 329 PPAHVLSRSIGLQGIGMLVEGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMIFFSIFGKFGAFFASIPLPIFAA 408 (503)
Q Consensus 329 ~~~~~~~r~i~adGl~silagl~G~~~~tt~~~~n~G~i~~Tg~~SR~~~~~ag~~Lillg~~pk~~alla~IP~~Vlgg 408 (503)
+.+.||++.++|++|+++|+||++|.+.+. ....+...+|.++|.+.+++++++++..++ ++.++..+|.+++++
T Consensus 290 --~~d~n~El~a~G~~N~~~~~fg~~p~~~s~-srs~~~~~~G~~t~~a~i~~~~~~l~~~l~--~~~~l~~iP~~~la~ 364 (563)
T TIGR00815 290 --KIDANQELVAQGIANIVGSFFSCYPATGSL-SRTAVNAKAGCRTQLSGVVTAIVVLLVLLV--LTPLFYYIPQAALAA 364 (563)
T ss_pred --CCCCcHHHHHhhHHHHHHHHhCccCCCCcc-hHHHHHHhcCCcchHHHHHHHHHHHHHHHH--HHHHHHhChHHHHHH
Confidence 356899999999999999999999999887 567777789999999999999888776555 567999999999999
Q ss_pred HHHH
Q 010715 409 IYCV 412 (503)
Q Consensus 409 ~liv 412 (503)
++++
T Consensus 365 ili~ 368 (563)
T TIGR00815 365 IIIS 368 (563)
T ss_pred HHHH
Confidence 9886
No 14
>PRK11660 putative transporter; Provisional
Probab=99.81 E-value=2.3e-17 Score=181.77 Aligned_cols=320 Identities=18% Similarity=0.239 Sum_probs=205.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCcceeeccchhhHHHHHH
Q 010715 47 WPQALLLAFQHYIVMLGTTVLISSTLVPL--MGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLS 124 (503)
Q Consensus 47 ~~~~illGlQh~l~m~~~~i~~P~ila~a--~gl~~~~~~~li~a~l~~sGI~Tllq~~~G~rlPiv~Gpsfa~v~~~~~ 124 (503)
+...+++|+.-.+. .+|.-++.+ .|+++ +..++.+-+++++.+++|+.--++.||..+.......
T Consensus 29 l~~D~iAGltv~~~------~iPq~mayA~lag~pp-------~~GLysa~~~~~vyal~Gss~~~~~Gp~a~~~~~~~~ 95 (568)
T PRK11660 29 FTRDLIAGITVGII------AIPLAMALAIASGVPP-------QYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYP 95 (568)
T ss_pred hhHHHHHHHHHHHH------HHHHHHHHHHHcCCCh-------HHHHHHHHHHHHHHHHhcCCCCcccChhHHHHHHHHH
Confidence 67889999987654 455555544 78887 4689999999999999987777889998765443333
Q ss_pred HHhhcCCCCCCCcchhhhccHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhcCCceehHHHHHHHHHhhhhhcccc-----
Q 010715 125 IINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLL----- 199 (503)
Q Consensus 125 i~~~~~~~~~~~~~~~~~~~~~~~~Ga~liaGlv~illg~~g~~~~l~~~fpp~V~G~~i~lIGlsL~~~g~~~~----- 199 (503)
+..+ .+++.+..+.+++|++|+++|++|+ +++.|++|.-|+..++..+|+.+...+++..
T Consensus 96 ~~~~--------------~~~~~~~~~~~l~Gii~~l~gllrl-G~l~~fip~pVi~Gf~~g~al~I~~~Ql~~~lG~~~ 160 (568)
T PRK11660 96 VSQQ--------------FGLAGLLVATLMSGIILILMGLARL-GRLIEYIPLSVTLGFTSGIGIVIATLQIKDFFGLQM 160 (568)
T ss_pred HHHH--------------hhHHHHHHHHHHHHHHHHHHHHHhh-hHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3322 2356667779999999999999997 8999999977777777777776554433211
Q ss_pred ---cc----------------ch---hhHHHHHHHHHHHHHHhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhcCCC
Q 010715 200 ---GN----------------CV---EIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYN 257 (503)
Q Consensus 200 ---~~----------------~~---~v~l~~l~l~v~~~~~~~~~~~~~~~~~r~~avLigivvG~i~a~~lg~~g~~~ 257 (503)
.. +| .+++.++++++++ +++. .|.+.-++.+++++++++.++..+ ++
T Consensus 161 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~lll~~----~~~~------~~iP~~li~iiv~t~~~~~~~~~~-~~ 229 (568)
T PRK11660 161 AHVPEHYLEKVGALFQALPTINWGDALIGIVTLGVLILW----PRLK------IRLPGHLPALLAGTAVMGVLNLLG-GH 229 (568)
T ss_pred CCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH----Hhhc------ccCchHHHHHHHHHHHHHHHhccC-CC
Confidence 00 12 2334444444332 2221 124566888888888888775421 01
Q ss_pred CCCccccccccc-Ccc--CcCC-CCCcccccccc-cc-ccc-ccchhH----HHHHHHHHHhhhhhhhHHHHHHHhhhCC
Q 010715 258 NVPEQTKLSCRT-DRS--YLLS-SAPWIKVPYPF-QW-GTP-IFRASH----VFGMIGAALVTSAESTGTFIAASRFAGA 326 (503)
Q Consensus 258 ~~~~~~~~~~~~-d~~--~~i~-~ap~~~~P~~~-~~-g~P-~f~~~~----il~~l~~~lv~~~esiG~~~a~~~~~~~ 326 (503)
-+...+...... |-. ..+. ..|-+.+|+.. .+ +.+ .+++.. +...+.+.++..+|++-...+.++..++
T Consensus 230 v~~vg~~~~~~~~~g~~~~~ip~~~p~~~~p~~~~~~~~~~~~~~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~~~~~~ 309 (568)
T PRK11660 230 VATIGSRFHYVLADGSQGNGIPPLLPQFVLPWNLPGADGQPFTLSWDLIRALLPAAFSMAMLGAIESLLCAVVLDGMTGT 309 (568)
T ss_pred ceeecccccccccccccccCCCCCCCCCCCCccccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 000000000000 000 0000 01112222100 00 000 135443 3445678889999999777777766553
Q ss_pred CCCCcccccchhhhhhhHHHHhhhhCCCccccccccccchhcccCCCcchHHHHHHHHHHHHHHhhhHHHHhhhCCcchh
Q 010715 327 TAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMIFFSIFGKFGAFFASIPLPIF 406 (503)
Q Consensus 327 ~~~~~~~~~r~i~adGl~silagl~G~~~~tt~~~~n~G~i~~Tg~~SR~~~~~ag~~Lillg~~pk~~alla~IP~~Vl 406 (503)
+.+.||++.++|++|+++|++|++|.+++. ....+...+|.++|.+.+++++++++.-++ ++.++..||.+++
T Consensus 310 ----~~d~n~EL~a~G~aNi~~~~fgg~p~~~s~-srSa~n~~aGarT~la~iv~a~~~ll~ll~--l~~ll~~iP~~vL 382 (568)
T PRK11660 310 ----KHSANSELVGQGLGNIVAPFFGGITATAAI-ARSAANVRAGATSPISAVIHALLVLLALLV--LAPLLSYLPLSAM 382 (568)
T ss_pred ----CCCCcHHHHHHhHHHHHHHHhCcccccchH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHH--HHHHHHhCcHHHH
Confidence 357899999999999999999999999886 455666778999999988888766544222 4459999999999
Q ss_pred hHHHHH
Q 010715 407 AAIYCV 412 (503)
Q Consensus 407 gg~liv 412 (503)
++++++
T Consensus 383 a~ili~ 388 (568)
T PRK11660 383 AALLLM 388 (568)
T ss_pred HHHHHH
Confidence 999876
No 15
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.79 E-value=3.2e-17 Score=164.54 Aligned_cols=312 Identities=22% Similarity=0.286 Sum_probs=229.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCcceeeccchhhHHHHHHHHhh
Q 010715 49 QALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIIND 128 (503)
Q Consensus 49 ~~illGlQh~l~m~~~~i~~P~ila~a~gl~~~~~~~li~a~l~~sGI~Tllq~~~G~rlPiv~Gpsfa~v~~~~~i~~~ 128 (503)
.++..|++.+++-+++..++-+--+++.|.+++|++.++.+..+..|+.|+.-++. +|.|++.+.|.--... .+.+.
T Consensus 21 ~~l~ag~va~~vG~~~s~aii~~aa~a~gas~aq~aSwl~al~l~mGv~ti~Ls~~-yR~Pv~~aWSTPG~al--l~asl 97 (402)
T COG3135 21 QTLLAGFVAVLVGYASSLAIIIQAAQAAGASPAQIASWLTALGLAMGVSTLTLSLR-YRVPVLTAWSTPGAAL--LVASL 97 (402)
T ss_pred hhhhhhhHHheeccCccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhh-hccceeeeecCccHHH--HHhcc
Confidence 68899999999988888777666667799999999999999999999999999988 8999998777533321 11211
Q ss_pred cCCCCCCCcchhhhccHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhcCCceehHHHHHHHHHhhhhhccccccchhhHHH
Q 010715 129 YNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLLGNCVEIGLP 208 (503)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~Ga~liaGlv~illg~~g~~~~l~~~fpp~V~G~~i~lIGlsL~~~g~~~~~~~~~v~l~ 208 (503)
.+ .++.++.|+.+++|++.++.|.+|.+.|+.|.+||.+..-++..|=+..--.+++...++..+.+.
T Consensus 98 ~g------------~s~~eaVGAfiVt~~li~l~G~~~~l~rl~~~IP~sla~AmlAGILL~F~l~a~~a~~~~p~l~lp 165 (402)
T COG3135 98 GG------------LSFAEAVGAFIVTGALIILCGLTGPLTRLMRIIPPSLAAAMLAGILLRFGLKAFKALPTQPLLVLP 165 (402)
T ss_pred CC------------CCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhccCCChHHHHH
Confidence 22 479999999999999999999999999999999986655554433333333344445556655555
Q ss_pred HHHHHHHHHHHhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccccCccCcCCCCCccccccccc
Q 010715 209 MLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTDRSYLLSSAPWIKVPYPFQ 288 (503)
Q Consensus 209 ~l~l~v~~~~~~~~~~~~~~~~~r~~avLigivvG~i~a~~lg~~g~~~~~~~~~~~~~~~d~~~~i~~ap~~~~P~~~~ 288 (503)
.++..++..+ +-.+++|+..+++|..++.+.|... . ...++-.+.| .
T Consensus 166 mv~~~ll~r~-----------f~pr~aV~aalvvgv~va~~~G~~~----------------~---~~~~~~~~~p---~ 212 (402)
T COG3135 166 MVLAYLLARV-----------FAPRYAVIAALVVGVLVAALLGDLH----------------T---ALVALEISTP---T 212 (402)
T ss_pred HHHHHHHHHH-----------cCchHHHHHHHHHHHHHHHHhCccc----------------c---cccccccCcc---e
Confidence 5544443322 2348999999999999998886421 1 1122223444 6
Q ss_pred ccccccchhHHHHH-HHHHHhhhhhhhHHHHHHHhhhCCCCCCcccccchhhhhhhHHHHhhhhCCCccccccccccchh
Q 010715 289 WGTPIFRASHVFGM-IGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTTASVENVGLL 367 (503)
Q Consensus 289 ~g~P~f~~~~il~~-l~~~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~i~adGl~silagl~G~~~~tt~~~~n~G~i 367 (503)
|-.|+||+.+++.. ++.+++++......-.|+-|.+|.+ ...+--+...|+.+++++.||+.. -|.+.|
T Consensus 213 ~v~P~Fs~~A~l~lalPL~lvtmasQN~pGiAvLka~gY~----pp~~pl~~~TGl~sll~ApfG~~t------~nLaAI 282 (402)
T COG3135 213 WVTPEFSFAAMLSLALPLFLVTMASQNLPGIAVLKAAGYQ----PPPSPLIVATGLASLLSAPFGGHT------VNLAAI 282 (402)
T ss_pred eeCCcccHHHHHHHhHHHHHHHHHhccCccceeehhcCCC----CCCchHHHHhHHHHHHhcccccce------ecHHHH
Confidence 77899999998876 6899999988888777877777643 345778999999999999999985 344444
Q ss_pred cccCC--------Cc-ch-HHHHHHHHHHHHHHh-hhHHHHhhhCCcchhhHH-HHHHHHHHH
Q 010715 368 GLTHI--------GS-RR-VVQISTAFMIFFSIF-GKFGAFFASIPLPIFAAI-YCVLLGIVA 418 (503)
Q Consensus 368 ~~Tg~--------~S-R~-~~~~ag~~Lillg~~-pk~~alla~IP~~Vlgg~-livlf~~i~ 418 (503)
...-| .+ || +..++|.+-+++|+| +.+.+++...|.+.+..+ -+-+.+.+.
T Consensus 283 tAAic~gpdaHpD~~rry~Aa~~agi~ylv~GlF~~~~~~l~~alP~~li~~lAGLALlg~~~ 345 (402)
T COG3135 283 TAAICTGPDAHPDPARRYTAALVAGIFYLLAGLFGGALVGLMAALPASLIAALAGLALLGTLG 345 (402)
T ss_pred HHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH
Confidence 43322 22 33 578999999999999 569999999999987654 223444443
No 16
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.46 E-value=1.6e-13 Score=138.03 Aligned_cols=243 Identities=20% Similarity=0.227 Sum_probs=152.9
Q ss_pred HHHhhhHHhhhhhcCCceehHHHHHHHHHhhhhhccccc---------c----------------ch---hhHHHHHHHH
Q 010715 162 LGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLLG---------N----------------CV---EIGLPMLVLL 213 (503)
Q Consensus 162 lg~~g~~~~l~~~fpp~V~G~~i~lIGlsL~~~g~~~~~---------~----------------~~---~v~l~~l~l~ 213 (503)
+|++|+ +++.|++|.-|+..++..+|+.++..+++.+- + +| .++..++.++
T Consensus 1 lGllrl-G~l~~~ip~pVi~Gf~~g~ai~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 79 (280)
T PF00916_consen 1 LGLLRL-GFLVRFIPRPVISGFLAGIAILIIFSQLPNLLGIPVVPSHEGLFSFIRALFQLISTITNWPTLAIGLVALVFL 79 (280)
T ss_pred Cccccc-cHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhccchhhhhhhhHHHHHH
Confidence 366787 99999999888877888888877655443210 0 11 1122222222
Q ss_pred HHHHHHhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccccCc-cCcCCCCCccccccccccccc
Q 010715 214 VICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTDR-SYLLSSAPWIKVPYPFQWGTP 292 (503)
Q Consensus 214 v~~~~~~~~~~~~~~~~~r~~avLigivvG~i~a~~lg~~g~~~~~~~~~~~~~~~d~-~~~i~~ap~~~~P~~~~~g~P 292 (503)
. +.++.++. ++.+...+....++.+++++++++...... + .++. .+.-..-|.+.+|. .++.+.
T Consensus 80 ~-~~~~~~~~-~~~~~~~~~p~~li~vv~~~~~~~~~~~~~-~-----------~v~~~~~i~~~lp~~~~p~-~~~~~~ 144 (280)
T PF00916_consen 80 L-IIRLLPKR-LPSRFWPPIPAPLIVVVLGTLLSWLFLLDK-Y-----------GVAIVGEIPSGLPPPSLPS-FDISWS 144 (280)
T ss_pred h-hhhhhhhh-ccccccccccccceeeehhhhhhhhhhhcc-c-----------cccccccccccCccccCcc-cccccc
Confidence 2 22222210 011223345667888888888777663210 0 1121 11112234444442 111111
Q ss_pred ccchhHHHHHHHHHHhhhhhhhHHHHHHHhhhCCCCCCcccccchhhhhhhHHHHhhhhCCCccccccccccchhcccCC
Q 010715 293 IFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTTASVENVGLLGLTHI 372 (503)
Q Consensus 293 ~f~~~~il~~l~~~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~i~adGl~silagl~G~~~~tt~~~~n~G~i~~Tg~ 372 (503)
.+ ...+...+.+++++.+|++.+..+.++..++ +.+.||++.+.|++|+++|++|++|.+.+. .+..+....|.
T Consensus 145 ~~-~~~~~~a~~ia~v~~~~s~~~~~~~~~~~~~----~~d~n~El~a~G~aNi~s~~~gg~p~~~s~-srs~~~~~~Ga 218 (280)
T PF00916_consen 145 LI-LDLLPTALAIAIVGFIESLLIAKSIAKKTGY----RIDPNQELIALGLANIVSGLFGGMPGSGSF-SRSAVNYRAGA 218 (280)
T ss_pred cc-cccchhHHHHHHHHHHHHHHhhhhhcccccc----cCCcHHHHHHhhhccccchhhccccccccc-ccchHHHhcCc
Confidence 11 2234456789999999999888887765543 457899999999999999999999999887 66667777899
Q ss_pred CcchHHHHHHHHHHHHHHhhhHHHHhhhCCcchhhHHHHH-HHHHHHHHHHHHHhhc
Q 010715 373 GSRRVVQISTAFMIFFSIFGKFGAFFASIPLPIFAAIYCV-LLGIVAAVGITFIQFA 428 (503)
Q Consensus 373 ~SR~~~~~ag~~Lillg~~pk~~alla~IP~~Vlgg~liv-lf~~i~~~Gi~~l~~~ 428 (503)
+||.+.++++++++++-++ ++.++..+|.+++++++++ .+.++-...++.+.+.
T Consensus 219 ~t~~s~~~~~~~~l~~l~~--~~~~l~~iP~~~La~ili~~~~~l~~~~~~~~~~~~ 273 (280)
T PF00916_consen 219 RTRLSGLISALFVLLVLLF--LAPLLAYIPKAVLAAILIVVGISLIDWSSLRRLWRV 273 (280)
T ss_pred ceeehhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcC
Confidence 9999999888887665443 4569999999999999886 4455555555555443
No 17
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=99.42 E-value=1.4e-11 Score=137.60 Aligned_cols=311 Identities=18% Similarity=0.185 Sum_probs=200.3
Q ss_pred HHHHHHHHHhhh--cCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCcceeeccchhhHHHHHH-HHhhcCCCCCCCcchh
Q 010715 64 TTVLISSTLVPL--MGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLS-IINDYNDGSFTSEHDR 140 (503)
Q Consensus 64 ~~i~~P~ila~a--~gl~~~~~~~li~a~l~~sGI~Tllq~~~G~rlPiv~Gpsfa~v~~~~~-i~~~~~~~~~~~~~~~ 140 (503)
+++.+|.-++.+ +|+++ ...|+.+-++.++.++||+--++-.||-. .+..+.. +.++.-. ... +...
T Consensus 91 g~l~VPQ~iaYa~la~lpp-------iyGLYssf~~~~iY~~fGtsr~isiG~~a-v~sLmv~~~v~~~v~-~~~-~~~~ 160 (665)
T KOG0236|consen 91 GSLSVPQGLAYALLAGLPP-------IYGLYSSFFPPLIYAIFGTSRHVSIGPFA-VVSLMVGTVVSQVVL-SEA-PSND 160 (665)
T ss_pred eeeecchHHHHHHHcCCCh-------HHHHHHHHHHHHHheeccCCCcccccHHH-HHHHHHHHHHHHHHh-ccC-CCcC
Confidence 456778888776 78887 69999999999999999988888888743 2222222 1111000 000 0000
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhcCCceehHHHHHHHHHhhhhhc------ccccc-------------
Q 010715 141 FRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGF------PLLGN------------- 201 (503)
Q Consensus 141 ~~~~~~~~~Ga~liaGlv~illg~~g~~~~l~~~fpp~V~G~~i~lIGlsL~~~g~------~~~~~------------- 201 (503)
-...++.+.-..+++|++|+++|++|+ +.+.+++|..++..++...++.+...++ ++...
T Consensus 161 ~~~~i~va~~lt~l~Giiq~~mG~lrL-Gfl~~~lS~~~l~GFt~gaa~~I~~sQlk~llGi~~~~~~~~~~~~~~~~~~ 239 (665)
T KOG0236|consen 161 IATTIQVATTLTFLTGIIQLILGLLRL-GFLVRFLSEPALSGFTTGAALHIVTSQLKVLLGITSFPRHSGPGSIVFIVFD 239 (665)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHccHHHHhHhhhhhhhhhhHHhhHhhccccccCCCCCceeEEEeeHH
Confidence 125678888889999999999999998 9999999965444455555554443322 21110
Q ss_pred ----------chhhHHHHHHHHHHHHH-HhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccccC
Q 010715 202 ----------CVEIGLPMLVLLVICQQ-YLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTD 270 (503)
Q Consensus 202 ----------~~~v~l~~l~l~v~~~~-~~~~~~~~~~~~~r~~avLigivvG~i~a~~lg~~g~~~~~~~~~~~~~~~d 270 (503)
.+.+++..++++ .+.+ +.++.. ++-++.....-++.+++++++++.+.....+.. ..++
T Consensus 240 ~~~~~~~~~~~~~~~l~~l~~L-~~~k~~~~~~~-~k~~~v~~~~~li~vIi~T~~~~~~~~~~~~~~--------~~~~ 309 (665)
T KOG0236|consen 240 LLANLPKTLATLVLSLIFLVVL-LLTKELNPKFK-KKLFSVPIPFELIVVIIGTLISYIFRLEGRYGP--------IIVG 309 (665)
T ss_pred hhhcccccchhhhhHHHHHHHH-HHHHHhhhhhc-ccceeecccHHHHHHHHHHHHHHHhccccccCC--------eeec
Confidence 122333333333 2333 232221 111123455688899999999887754321100 0111
Q ss_pred ccCcCCCCCcccccccccccccccc--hhHHHHHHHHHHhhhhhhhHHHHHHHhhhCCCCCCcccccchhhhhhhHHHHh
Q 010715 271 RSYLLSSAPWIKVPYPFQWGTPIFR--ASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVE 348 (503)
Q Consensus 271 ~~~~i~~ap~~~~P~~~~~g~P~f~--~~~il~~l~~~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~i~adGl~sila 348 (503)
..-...|... .|.++ ...+...+.+.+++..|+++-..+.++.-+. .-+-||++.|-|++|+++
T Consensus 310 --~i~~g~~~~~--------lp~~~~~~~~~~~~~~i~iva~~~~iai~k~fa~~~~y----~vd~nqELiAlG~~Ni~s 375 (665)
T KOG0236|consen 310 --EIPRGFPPPS--------LPPLSLTPQVIPDAFAIAIVALLEHIAIGKSFASLHGY----KVDSNQELIALGISNILS 375 (665)
T ss_pred --cCCCCCCCCC--------CCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----eeCCChHHHHHHHHHHhh
Confidence 0011122222 23332 2335557889999999998777777665443 356789999999999999
Q ss_pred hhhCCCccccccccccchhcccCCCcchHHHHHHHHHHHHHHhhhHHHHhhhCCcchhhHHHHH
Q 010715 349 GIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMIFFSIFGKFGAFFASIPLPIFAAIYCV 412 (503)
Q Consensus 349 gl~G~~~~tt~~~~n~G~i~~Tg~~SR~~~~~ag~~Lillg~~pk~~alla~IP~~Vlgg~liv 412 (503)
++|++.|.+.+. .+..+-..+|+.++.+.+..++..++.=. .++.++..+|.++++++.+.
T Consensus 376 Sff~~~p~tgs~-sRSav~~~sG~~T~~s~i~~~~~vl~~l~--~l~p~f~~iP~~vLaaIIi~ 436 (665)
T KOG0236|consen 376 SFFGCYPTTGSF-SRSAVNIKSGGRTQVAGIVSAALVLLALL--FLGPLFYYIPKCVLAAIIIS 436 (665)
T ss_pred hhhceEcccchh-hHHHHHhhcCCcchHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHH
Confidence 999999999988 88888899999999997776665544322 46779999999999999876
No 18
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=98.25 E-value=0.00096 Score=76.65 Aligned_cols=318 Identities=16% Similarity=0.185 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccee-eccch---hhHHHHHHHHhhcCCCCCCCcchhhhccHHHHHHHHHHHHHHH
Q 010715 84 GRVIQSLLFMSGLNTLLQTLFGTRLPTV-MGPSA---AFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFIN 159 (503)
Q Consensus 84 ~~li~a~l~~sGI~Tllq~~~G~rlPiv-~Gpsf---a~v~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ga~liaGlv~ 159 (503)
.+=++=+++.++++.++.+++|.. |+. .|++. .|.-....++.+++. +.++...=..+.++++.
T Consensus 400 ~~gv~E~Llstai~Giifslf~GQ-PL~IlG~TGPilvF~~~ly~~c~~~~~-----------~yl~~~~WigiW~~~~~ 467 (900)
T TIGR00834 400 MMGVSELLISTAVQGVLFALLAAQ-PLLVVGFSGPLLVFEEAFFSFCESNGL-----------EYLVGRVWIGLWLVLLV 467 (900)
T ss_pred cchHHHHHHHHHHHHHHHhhhcCC-ceEEecCcccHHHHHHHHHHHHhhcCC-----------chHHHHHHHHHHHHHHH
Confidence 344677889999999999999655 554 45553 233223333333221 12222233457788888
Q ss_pred HHHHHhhhHHhhhhhcCCceehHHHHHHHHHhhhhhccccc---------------------------------------
Q 010715 160 IVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLLG--------------------------------------- 200 (503)
Q Consensus 160 illg~~g~~~~l~~~fpp~V~G~~i~lIGlsL~~~g~~~~~--------------------------------------- 200 (503)
++++.+.. ..+.|+++.-.-=.+-++|++.-+..++...-
T Consensus 468 ~lla~~~~-s~lvryiTRFTeEiFa~lIs~IFI~eai~~L~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (900)
T TIGR00834 468 LLLVATEG-SFLVRYISRFTQEIFSFLISLIFIYETFSKLIKIFQEHPLQVFYNTLFCVPPKPQGPSVSALLEKDCSKLG 546 (900)
T ss_pred HHHHHHhH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccccccccccccccccccc
Confidence 88888876 77888988765555555565544333321100
Q ss_pred ------cc---hhhHHHHHH---HHHHHHHHhhhccc------cchhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 010715 201 ------NC---VEIGLPMLV---LLVICQQYLKRLHP------KAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQ 262 (503)
Q Consensus 201 ------~~---~~v~l~~l~---l~v~~~~~~~~~~~------~~~~~~r~~avLigivvG~i~a~~lg~~g~~~~~~~~ 262 (503)
.| ...++..++ ..+.++.++|++.+ +.++++.-|++.+++++.+.+.+.++.. +.++-
T Consensus 547 ~~~~~~~c~~~~~~~llsliL~lgTf~~a~~L~~fk~s~yf~~~vR~~isDfgv~iaI~~~t~v~~~~~~v--~~~kl-- 622 (900)
T TIGR00834 547 GTLGGNNCRFQPNTALLSLVLMLGTFFLAMFLRKFKNSRYFPGKARRLIGDFGVPISILIMVLVDIFIGDT--YTQKL-- 622 (900)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHhCCCCcCCchhhhhhhhhhHHHHHHHHHHHHHHhccC--ccccc--
Confidence 01 122333322 23334555665522 2334455589999999988888765421 11110
Q ss_pred cccccccC-ccCcC-CCCCcccccccccccccccc-hhHHHHHHHHHHhhhhhhhHHHHHHHhhhCCCCCCcccccchhh
Q 010715 263 TKLSCRTD-RSYLL-SSAPWIKVPYPFQWGTPIFR-ASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIG 339 (503)
Q Consensus 263 ~~~~~~~d-~~~~i-~~ap~~~~P~~~~~g~P~f~-~~~il~~l~~~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~i~ 339 (503)
...+ +...- ..-.|+--|.......|.+. +.++++.+.+++.-++|+-=+..-+++- +.+-.+....+=-+.
T Consensus 623 ----~Vp~~f~pt~p~~R~W~i~p~~~~~~~p~w~~~~A~iPAlll~ILiFmD~nIts~iv~~~-e~kLkKgsgyH~Dll 697 (900)
T TIGR00834 623 ----SVPSGLKVTNPSARGWFIPPLGENRPFPWWMMFAAALPALLVFILIFMEQQITTLIVSKK-ERKLKKGSGFHLDLL 697 (900)
T ss_pred ----CCCCCcCCCCCCCCCeEEccccccccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcCc-cccCCCCcccchHHH
Confidence 0001 11100 11356532221000113222 5567777888888888876333323221 111112233555678
Q ss_pred hhhhHHHHhhhhCCCccccccccccc-hhc---------------ccCCCc-chHHHHHHHHHHHHHHhhhHHHHhhhCC
Q 010715 340 LQGIGMLVEGIFGSVVGTTASVENVG-LLG---------------LTHIGS-RRVVQISTAFMIFFSIFGKFGAFFASIP 402 (503)
Q Consensus 340 adGl~silagl~G~~~~tt~~~~n~G-~i~---------------~Tg~~S-R~~~~~ag~~Lillg~~pk~~alla~IP 402 (503)
.-|+-+.++|++|-...+....++.- +-+ ..++.. |......++ |+.++++ ...++..||
T Consensus 698 llg~~~~v~sllGLPw~~aatv~S~~Hv~sL~v~~~~~~~Ge~~~i~~V~EQRvT~ll~~l-Liglsv~--~~PvL~~IP 774 (900)
T TIGR00834 698 LVVGMGGVAALFGLPWLSAATVRSVTHANALTVMSKASAPGEKAQIQEVREQRVTGLLVAV-LVGLSIL--MEPILKRIP 774 (900)
T ss_pred HHHHHHHHHHhcCCCcccccCCcChhhHhHHeeeeeccCCCCCCccceeEeeehHHHHHHH-HHHHHHH--HHHHHhhcc
Confidence 88999999999987765554222221 111 123443 444555554 3333322 344899999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhh
Q 010715 403 LPIFAAIYCVLLGIVAAVGITFIQF 427 (503)
Q Consensus 403 ~~Vlgg~livlf~~i~~~Gi~~l~~ 427 (503)
.+|+.|+++|+ |.-...|.+...+
T Consensus 775 ~aVL~GvFlYM-Gv~SL~GnQ~~~R 798 (900)
T TIGR00834 775 LAVLFGIFLYM-GVTSLSGIQLFDR 798 (900)
T ss_pred HHHHHHHHHHH-HHhhcccCHHHHH
Confidence 99999999884 6666666666654
No 19
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=98.15 E-value=0.0014 Score=74.04 Aligned_cols=340 Identities=13% Similarity=0.171 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCcceeeccch---hhHHHHHHHHhhcCCC
Q 010715 56 QHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSA---AFTLPVLSIINDYNDG 132 (503)
Q Consensus 56 Qh~l~m~~~~i~~P~ila~a~gl~~~~~~~li~a~l~~sGI~Tllq~~~G~rlPiv~Gpsf---a~v~~~~~i~~~~~~~ 132 (503)
--.+.++.+++.+.+..++.++-.. +-..=++=+++.+.++.++.+++|..=..++|++- .|.-....++..++.
T Consensus 364 a~~lfiYfa~l~P~ItFG~ll~~~T-dg~~~v~E~L~stal~GiifslfggQPLlIlg~TgP~lVfe~~lf~f~~~~~~- 441 (876)
T KOG1172|consen 364 AATLFIYFACLLPAITFGGLLGEAT-DGLIGVVETLLSTALCGIIFSLFGGQPLLILGVTGPLLVFEKALFKFCKDNGL- 441 (876)
T ss_pred hHHHHHHHHhhhhHhhHHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHHHHhhCCC-
Confidence 4455556566655555554433222 33455677899999999999999766334556653 222233333433321
Q ss_pred CCCCcchhhhccHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhcCCceehHHHHHHHHHhhhhhcc-----------cc--
Q 010715 133 SFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFP-----------LL-- 199 (503)
Q Consensus 133 ~~~~~~~~~~~~~~~~~Ga~liaGlv~illg~~g~~~~l~~~fpp~V~G~~i~lIGlsL~~~g~~-----------~~-- 199 (503)
+.+....=..+.+.++.++++.+.. ..+.++|+...-=.+-++|.+..+..++. +.
T Consensus 442 ----------dyl~~r~wVglW~~~l~illaa~~a-s~lv~~~TRfteEiF~~LIs~iFi~eai~kl~~i~~~~~~~~~~ 510 (876)
T KOG1172|consen 442 ----------DYLAFRAWVGLWTAFLLILLAATNA-SSLVKYITRFTEEIFGLLISLIFIYEAIKKLIKIFKGLPIEFDS 510 (876)
T ss_pred ----------chhhHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccc
Confidence 2233333346778888888888876 78888888754433444444433333322 00
Q ss_pred ----------ccc-------------hhhHHHH---HHHHHHHHHHhhhccc--c----chhhhhhhHHHHHHHHHHHHH
Q 010715 200 ----------GNC-------------VEIGLPM---LVLLVICQQYLKRLHP--K----AHFIVERFALLFCIGVVWAFA 247 (503)
Q Consensus 200 ----------~~~-------------~~v~l~~---l~l~v~~~~~~~~~~~--~----~~~~~r~~avLigivvG~i~a 247 (503)
..| ...++.. .+..+.++.++|++.+ . .+.++.-|++.+++++-..+.
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~llslil~~gt~~~a~~lr~fr~s~yf~~~~R~~isDfgvpisIl~~s~i~ 590 (876)
T KOG1172|consen 511 KPNPGADWSGPECESVSGTLLGSSCRPDTALLSLILMFGTLFLALTLRKFKSSRYFPRKVRSLISDFGVPLSILVFSLID 590 (876)
T ss_pred cCCcccccccccccccCcccCCCcCCcchHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHhhhhHHHHHHHHHHH
Confidence 000 2223333 2334445666776632 2 233445589999999988888
Q ss_pred HHHHhhcCCCCCCcccccccccCccCcCCC-CCcccccc-cccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHhhhC
Q 010715 248 AILTAAGAYNNVPEQTKLSCRTDRSYLLSS-APWIKVPY-PFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAG 325 (503)
Q Consensus 248 ~~lg~~g~~~~~~~~~~~~~~~d~~~~i~~-ap~~~~P~-~~~~g~P~f~~~~il~~l~~~lv~~~esiG~~~a~~~~~~ 325 (503)
+..+.. ++.+- ..+..++..-.. ..|+-.|. +.+|. --..++++.+.+++.-++|+-= ++.+++
T Consensus 591 ~~~~~~--~~~kl-----~vp~~~~~t~~~~rgw~v~~~~~~P~~---~~~~A~ipalll~iLiFmDqqI----ts~iv~ 656 (876)
T KOG1172|consen 591 YFGGSV--ETPKL-----PVPSVFPPTWPFDRGWFVPPFGKNPWW---YVFAALIPALLLTILIFMDQQI----TAVIVN 656 (876)
T ss_pred hhcccc--CCCcc-----ccCcCCCCCCcccCCeeeCCCCCCCHH---HHHHHHHHHHHHHHHHHhcchH----HHHHhh
Confidence 776521 11110 001111110111 34554431 12211 1235666777777888887753 233443
Q ss_pred CCC---CCcccccchhhhhhhHHHHhhhhCCCccccccccccchhc----c------------cCCCcch-HHHHHHHHH
Q 010715 326 ATA---PPAHVLSRSIGLQGIGMLVEGIFGSVVGTTASVENVGLLG----L------------THIGSRR-VVQISTAFM 385 (503)
Q Consensus 326 ~~~---~~~~~~~r~i~adGl~silagl~G~~~~tt~~~~n~G~i~----~------------Tg~~SR~-~~~~ag~~L 385 (503)
+++ .+.....=.+..-|+-+.++|++|-...+....++.--+. . -++...| .....+++.
T Consensus 657 rke~kLKKgsgyH~DLlllgil~~icsllGLPw~~~a~p~S~~H~~SL~v~~~~~apge~~~i~~V~EQRvtgll~~llv 736 (876)
T KOG1172|consen 657 RKENKLKKGSGYHLDLLLLGILTLICSLLGLPWSNAATVQSPMHTKSLAVESETSAPGEQPQIVGVREQRVTGLLQFLLV 736 (876)
T ss_pred cccccCCCCcchhHHHHHHHHHHHHHHhcCCCccccccccCHHHHHHHHHhhcccCCCCccccccchhhhhHHHHHHHHH
Confidence 332 1223444578899999999999988776665444442111 1 1233333 344444433
Q ss_pred HHHHHhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHh
Q 010715 386 IFFSIFGKFGAFFASIPLPIFAAIYCVLLGIVAAVGITFIQ 426 (503)
Q Consensus 386 illg~~pk~~alla~IP~~Vlgg~livlf~~i~~~Gi~~l~ 426 (503)
. +. --...++..||.||+-|+.+|+ |.=...|.+..+
T Consensus 737 g-ls--~~~~pvL~~IP~~VL~GvFlYM-gv~SL~Gnqf~e 773 (876)
T KOG1172|consen 737 G-LS--VLLLPVLKLIPMPVLYGVFLYM-GVSSLPGNQFFE 773 (876)
T ss_pred H-HH--HHHHHHHhhccHHHHHHHHHHH-hhccCCccHHHH
Confidence 2 22 2345689999999999998874 444445555544
No 20
>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length.
Probab=97.62 E-value=0.011 Score=60.93 Aligned_cols=358 Identities=14% Similarity=0.155 Sum_probs=188.3
Q ss_pred ccceeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchh------HHHHHHHHHHHHHHHHHHHHhcCCcc
Q 010715 36 QLQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDK------GRVIQSLLFMSGLNTLLQTLFGTRLP 109 (503)
Q Consensus 36 ~~~y~v~~~pp~~~~illGlQh~l~m~~~~i~~P~ila~a~gl~~~~~------~~li~a~l~~sGI~Tllq~~~G~rlP 109 (503)
|-.|+.+|--|-. +|.---.+|+++.+ ...++.+|++++-. ..+|.+.+|+.-+++++.= .++++
T Consensus 54 D~rfE~ED~vPAl----AgtIGkivMvsAv~---aafA~~lgL~~~Fv~envR~EllI~a~lFvil~Sgfl~P--~anLA 124 (492)
T PF11840_consen 54 DYRFEWEDLVPAL----AGTIGKIVMVSAVA---AAFAAPLGLSPEFVIENVRYELLIAALLFVILFSGFLNP--RANLA 124 (492)
T ss_pred ccccchHHhhHHH----HhhhhHHHHHHHHH---HHHhhccCCChhHhhhhhhhhhhHHHHHHHHHHHhccCc--ccccc
Confidence 3345566654422 34444445555432 23444578876432 3455555565555555432 34454
Q ss_pred eeeccchhhHHHHHHHHhhcCCCCCCCcchhhhccHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhcCCceehHHHHHHHH
Q 010715 110 TVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGL 189 (503)
Q Consensus 110 iv~Gpsfa~v~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ga~liaGlv~illg~~g~~~~l~~~fpp~V~G~~i~lIGl 189 (503)
=-.||=-..+|.+. ..| +-+.++| ++-|++-+++++++--.|+.++=..-|.|..+.-+|+
T Consensus 125 GthgPmIpLIp~iv----aaG-------------gHPLalg--ilvg~fGlil~~~kggS~L~~LTs~gv~ggLllylG~ 185 (492)
T PF11840_consen 125 GTHGPMIPLIPLIV----AAG-------------GHPLALG--ILVGVFGLILSIFKGGSKLVNLTSHGVCGGLLLYLGF 185 (492)
T ss_pred CCCCCcchhhHHHH----HcC-------------CCcHHHH--HHHHHHHHHHHHhcchhHHHhhhcCccccceeeeehh
Confidence 44455333333221 111 1234444 4568899999999888899999888888877766666
Q ss_pred Hhhhhhcc---ccc---cchhhHHHHHHHHHHHHHHhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCCCccc
Q 010715 190 GLFMRGFP---LLG---NCVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQT 263 (503)
Q Consensus 190 sL~~~g~~---~~~---~~~~v~l~~l~l~v~~~~~~~~~~~~~~~~~r~~avLigivvG~i~a~~lg~~g~~~~~~~~~ 263 (503)
.=....++ .|+ +...+++..+...+++-.|+.++.| |..++-++-+++-++++.+|.. ++...+
T Consensus 186 ~G~~~qi~kl~~wa~~~~~~~i~fvvi~~tiv~Ya~L~k~~K------rWLaIPl~~~~a~~~a~~lGa~--f~f~t~-- 255 (492)
T PF11840_consen 186 VGLIGQIKKLFAWANGFDMGYIAFVVIIVTIVLYAYLAKIEK------RWLAIPLCSILAGVLAFALGAP--FEFTTE-- 255 (492)
T ss_pred hhHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhcc------chhhhhHHHHHHHHHHHHcCCC--ceeecC--
Confidence 32222111 122 2335666666666666666665432 3556667777777777777642 111100
Q ss_pred ccccccCccCcCCCCCcccccccccccccccc-hhHHHHHHHHHHh-hhhhhhHHHHHHHhhhCCCCCC--cccccchhh
Q 010715 264 KLSCRTDRSYLLSSAPWIKVPYPFQWGTPIFR-ASHVFGMIGAALV-TSAESTGTFIAASRFAGATAPP--AHVLSRSIG 339 (503)
Q Consensus 264 ~~~~~~d~~~~i~~ap~~~~P~~~~~g~P~f~-~~~il~~l~~~lv-~~~esiG~~~a~~~~~~~~~~~--~~~~~r~i~ 339 (503)
....+ ..-.-|..--+-++.|+|.++ .-+++|+.+.+.. =+-|.+|. +.-++.+-.+..+ .-+++....
T Consensus 256 -----pglp~-lnP~YWWge~tGw~LglP~~~hfiav~PFAiLAVaMWSpDflgh-rvFqelnypk~~~kvlMnvDDTm~ 328 (492)
T PF11840_consen 256 -----PGLPN-LNPMYWWGEETGWQLGLPTLEHFIAVLPFAILAVAMWSPDFLGH-RVFQELNYPKETKKVLMNVDDTMT 328 (492)
T ss_pred -----CCCCC-CCCcccccCCcccccCCCcHHHHHHhccHHHHHHHHhCchHHHH-HHHHHhcCchhhcceeecccchhH
Confidence 00000 111223333334567788643 3334444332222 23355553 3345554322111 236788899
Q ss_pred hhhhHHHHhhhhCCCccccccccccchh--cccCCCcchHHHHHHHHHHHHHHhhhHHHHhhhCCcchhhHHHHH-HHHH
Q 010715 340 LQGIGMLVEGIFGSVVGTTASVENVGLL--GLTHIGSRRVVQISTAFMIFFSIFGKFGAFFASIPLPIFAAIYCV-LLGI 416 (503)
Q Consensus 340 adGl~silagl~G~~~~tt~~~~n~G~i--~~Tg~~SR~~~~~ag~~Lillg~~pk~~alla~IP~~Vlgg~liv-lf~~ 416 (503)
...+=++.++.+|+...+++- . .=.+ +..|+-=+--.+..++++++.++.+-= .=..+=.||+--++++ +|=-
T Consensus 329 ~~siRQ~vGs~lGGgN~~SsW-g-TymIPaaIaKRPIpggAiLtg~~Ci~~av~GyP--Mdlavw~Pvl~vALlvGVflP 404 (492)
T PF11840_consen 329 MCSIRQIVGSILGGGNIASSW-G-TYMIPAAIAKRPIPGGAILTGLLCIVAAVWGYP--MDLAVWPPVLRVALLVGVFLP 404 (492)
T ss_pred HHHHHHHHhhcccCCcccccc-h-hhhhhHHHhcCCCCchHHHHHHHHHHHHHhcCc--chhhhcccHHHHHHHHHHHHH
Confidence 999999999999887544332 1 1111 122333333457777888877776410 1122235677766666 6767
Q ss_pred HHHHHHHHHhhcCCCCccchhhHHHH
Q 010715 417 VAAVGITFIQFANNNSMRNIYILGLS 442 (503)
Q Consensus 417 i~~~Gi~~l~~~~~~~~Rn~~Ivg~s 442 (503)
+.-+|+++.++-+-+++-.+.|.+.+
T Consensus 405 LleAGmqm~r~~k~sqsa~I~ifasa 430 (492)
T PF11840_consen 405 LLEAGMQMTRKGKTSQSAGICIFASA 430 (492)
T ss_pred HHHHHHHHHhcCCccceeeEEEeehh
Confidence 77899999876544433344444433
No 21
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=95.29 E-value=0.018 Score=62.89 Aligned_cols=181 Identities=13% Similarity=0.157 Sum_probs=1.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccccCccCcCC-CCCcccccccccccccccc-hhHHHHHHHH
Q 010715 228 HFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTDRSYLLS-SAPWIKVPYPFQWGTPIFR-ASHVFGMIGA 305 (503)
Q Consensus 228 ~~~~r~~avLigivvG~i~a~~lg~~g~~~~~~~~~~~~~~~d~~~~i~-~ap~~~~P~~~~~g~P~f~-~~~il~~l~~ 305 (503)
++++.-+++.|++++-+.+...++. . .++- ....++..... +.+|+--|. ...|.+. ..++++.+.+
T Consensus 277 R~~isDf~v~iaI~~~~~~~~~~~~-~--~~kL-----~vp~~f~pt~~~~r~W~v~p~---~~~p~w~~~aA~~palll 345 (510)
T PF00955_consen 277 REIISDFGVPIAILIMTLVDYLFGV-D--TPKL-----NVPSSFKPTSPGKRGWFVNPF---GSLPWWAIFAAIIPALLL 345 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhHHhhHHHHHHHHHHHHHHHhcc-c--cccc-----CCCCCCCCCCCCCCCeecCcc---cCCCHHHHHHHHHHHHHH
Confidence 3344558899999988887766541 1 0100 00001221111 145654342 1223232 3456666677
Q ss_pred HHhhhhhhhHHHHHHHhhhCCCC---CCcccccchhhhhhhHHHHhhhhCCCccccccccccc-hhc-------------
Q 010715 306 ALVTSAESTGTFIAASRFAGATA---PPAHVLSRSIGLQGIGMLVEGIFGSVVGTTASVENVG-LLG------------- 368 (503)
Q Consensus 306 ~lv~~~esiG~~~a~~~~~~~~~---~~~~~~~r~i~adGl~silagl~G~~~~tt~~~~n~G-~i~------------- 368 (503)
++.-.+|+-=+ +.++++++ ++....+=.+..-|+-+.++|++|-...++...++.- +-+
T Consensus 346 ~iL~F~DqnIt----s~ivn~~e~kLkKg~gyH~DL~llgi~~~v~sllGLPw~~aa~~~S~~Hv~sL~~~~~~~~pGe~ 421 (510)
T PF00955_consen 346 TILFFMDQNIT----SLIVNRPENKLKKGSGYHLDLFLLGIITLVCSLLGLPWMNAATPQSPMHVRSLAVESETSAPGEK 421 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhHh----HHHhCChhhccCCCCcccHHHHHHHHHHHHHHHcCCCCcccCccCCHHHhCcccEEeccccCCCC
Confidence 77777775422 22332221 1222344467888999999999987666554322221 111
Q ss_pred --ccCCCc-chHHHHHHHHHHHHHHhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhh
Q 010715 369 --LTHIGS-RRVVQISTAFMIFFSIFGKFGAFFASIPLPIFAAIYCVLLGIVAAVGITFIQF 427 (503)
Q Consensus 369 --~Tg~~S-R~~~~~ag~~Lillg~~pk~~alla~IP~~Vlgg~livlf~~i~~~Gi~~l~~ 427 (503)
..++.. |.......+ |+ |+..-+..++..||.||+.|+.+++ |.-...|.+..++
T Consensus 422 ~~i~~V~EqRvT~l~~~~-Li--gls~~l~pvL~~IP~~VL~GvFlym-G~~sL~gnq~~~R 479 (510)
T PF00955_consen 422 PKIVGVREQRVTGLLVHL-LI--GLSLFLLPVLKLIPMPVLYGVFLYM-GVTSLSGNQFFER 479 (510)
T ss_dssp -----------------------------------------------------------TTT
T ss_pred CeeCeEEEecccHHHHHH-HH--HHHHHHHHHHHHhhHHHHHHHHHhh-eeeeecCccHHHH
Confidence 113333 333444443 33 3343456689999999999999884 4444555555544
No 22
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=81.94 E-value=11 Score=42.13 Aligned_cols=121 Identities=12% Similarity=0.171 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhhhCCCCCCcccccchhhhhhhHHHHhhhhCCCccccccccccchhc--ccCCC--
Q 010715 298 HVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTTASVENVGLLG--LTHIG-- 373 (503)
Q Consensus 298 ~il~~l~~~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~i~adGl~silagl~G~~~~tt~~~~n~G~i~--~Tg~~-- 373 (503)
-++.-+.+.++..=|+++ -+..++-+ ...|+.+.=++.++.++||+.+...+. ...+... ..-++
T Consensus 24 Dl~AGltva~valP~ama----~a~~aGv~------p~~GLyas~i~~~v~alfGgs~~~i~G-Pt~a~~~v~a~~i~~~ 92 (554)
T COG0659 24 DLLAGLTVAAVALPLAMA----FAIAAGVP------PEAGLYASIVAGIIYALFGGSRGLISG-PTGAFAVVLAAVIASL 92 (554)
T ss_pred HHHHHHHHHHHHhHHHHH----HHHHcCCC------HHHHHHHHHHHHHHHHHHcCCccceec-cchhhHHHHHHHHHHH
Confidence 456667777777777775 34455533 247899999999999999999876544 3332211 11222
Q ss_pred -c------chHHHHHHHHHHHHHHhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhhcCC
Q 010715 374 -S------RRVVQISTAFMIFFSIFGKFGAFFASIPLPIFAAIYCVLLGIVAAVGITFIQFANN 430 (503)
Q Consensus 374 -S------R~~~~~ag~~Lillg~~pk~~alla~IP~~Vlgg~livlf~~i~~~Gi~~l~~~~~ 430 (503)
. -.....+|++.+++|++ |++.+...||.||+-|.+.=.--.|....+..+...+.
T Consensus 93 ~~~g~~~~~~~tllaGv~~i~~G~l-RLG~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~ 155 (554)
T COG0659 93 VETGLALAFLATLLAGVFQILLGLL-RLGRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLAS 155 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 1 12356788899999886 89999999999999998776555666666666654444
No 23
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=80.43 E-value=46 Score=35.86 Aligned_cols=97 Identities=15% Similarity=0.095 Sum_probs=48.2
Q ss_pred CCCCCCCCCCCCCCCCccccccccceeccCCCCHHHHHHHH-HHHHHHHHHHHHHHHH--HHhhhcCCCcchhHHHHHHH
Q 010715 14 QAAPPSLGLSRGPIWTPAEQLQQLQYCIHSNPPWPQALLLA-FQHYIVMLGTTVLISS--TLVPLMGGGHGDKGRVIQSL 90 (503)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~~pp~~~~illG-lQh~l~m~~~~i~~P~--ila~a~gl~~~~~~~li~a~ 90 (503)
|++.|.|.-|..+.+.+.+.+.+..++..-+.++.+.+..+ +..++..+......|. .+.+..|+++++...+.+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~ 80 (476)
T PLN00028 1 QPASPDPKYSKFALPVDSEHKATEFRLFSFARPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIAS 80 (476)
T ss_pred CCCCCCCCCcCCCCCcCcccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44555555555553334444444444444444433333333 2222222211112222 23445799888877766666
Q ss_pred HHHHHHHHHHHHH----hcCCcce
Q 010715 91 LFMSGLNTLLQTL----FGTRLPT 110 (503)
Q Consensus 91 l~~sGI~Tllq~~----~G~rlPi 110 (503)
++...++.++-.+ +|.|..+
T Consensus 81 ~~~~~~~~~~~G~l~dr~G~r~~~ 104 (476)
T PLN00028 81 VSGSIFSRLAMGPVCDLYGPRYGS 104 (476)
T ss_pred HHHHHHHHHHHHHHHHHhCChHHH
Confidence 6667777777764 6766433
No 24
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=77.89 E-value=36 Score=36.32 Aligned_cols=141 Identities=13% Similarity=0.083 Sum_probs=82.7
Q ss_pred HhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCcceeeccchhhHHHHHHHHhhcCCCCCCCcchhhhccHHHHHHH
Q 010715 72 LVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGS 151 (503)
Q Consensus 72 la~a~gl~~~~~~~li~a~l~~sGI~Tllq~~~G~rlPiv~Gpsfa~v~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ga 151 (503)
..++.|.+.. +...+...|++|++-+.|| +.++. .+-++ .+++... |.+++ .+.=.++
T Consensus 246 vl~aaGy~~p-----~~~~~~~tGl~sll~ApfG-g~~~n----laait--aAic~G~---------~ah~d-~~rR~~a 303 (395)
T TIGR00843 246 ALKAAGYNAP-----AKPIIAAAGLAALFAAFAG-GISIG----IAAIT--AAICMGK---------DAHED-KDKRWIA 303 (395)
T ss_pred HHHHcCCCCC-----chHHHHHHHHHHHHHhccC-Cchhh----hhHHh--HHHhcCc---------ccccC-cCccchH
Confidence 3444565543 4788899999999999997 33331 11122 2222111 11111 2333567
Q ss_pred HHHHHHHHHHHHHh-hhHHhhhhhcCCceehHHHHHHHHHhhhhh---ccc-cc--cchhhHHHHHHHHHHHHHHhhhcc
Q 010715 152 LIVSSFINIVLGYS-GAWGNLARFFSPIVIVPFVCVVGLGLFMRG---FPL-LG--NCVEIGLPMLVLLVICQQYLKRLH 224 (503)
Q Consensus 152 ~liaGlv~illg~~-g~~~~l~~~fpp~V~G~~i~lIGlsL~~~g---~~~-~~--~~~~v~l~~l~l~v~~~~~~~~~~ 224 (503)
.+.+|++++++|++ +..-.+...+|+..+.. +-|+.|...- +.+ +. ++-+=++.|+++. ..++
T Consensus 304 ~i~~Gv~yll~glfag~i~~l~~~~P~~li~~---laGlAll~~~~~~l~~a~~~~~~r~~a~~tflvt------aSg~- 373 (395)
T TIGR00843 304 AAAAGIFYLLAGLFAGAITALFAALPKELIAA---LAGLALLGAIAGNIKIALHEDQERDAALIAFLAT------ASGL- 373 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH---HHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH------HhcC-
Confidence 88999999999998 77788889999876553 3455554331 111 11 2333445554433 1222
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHH
Q 010715 225 PKAHFIVERFALLFCIGVVWAFAA 248 (503)
Q Consensus 225 ~~~~~~~r~~avLigivvG~i~a~ 248 (503)
.++...+-++|+++|.+...
T Consensus 374 ----~~~gigaafWgl~~G~~~~~ 393 (395)
T TIGR00843 374 ----HFLGIGSAFWGLCAGGLAYF 393 (395)
T ss_pred ----CcccccHHHHHHHHHHHHHH
Confidence 34567899999999977654
No 25
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=77.72 E-value=22 Score=39.69 Aligned_cols=119 Identities=7% Similarity=0.103 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhhhCCCCCCcccccchhhhhhhHHHHhhhhCCCccccccccccc-h-----hcccC
Q 010715 298 HVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTTASVENVG-L-----LGLTH 371 (503)
Q Consensus 298 ~il~~l~~~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~i~adGl~silagl~G~~~~tt~~~~n~G-~-----i~~Tg 371 (503)
-++.-+..+++.+-++++- +..++.+ ..-|+.+.-+..++.++||+.+.......+.- + +..-+
T Consensus 17 Di~aGltv~~~~iP~~~ay----A~laglp------p~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~~v~~~~ 86 (563)
T TIGR00815 17 DLMAGLTVGILLIPQAMAY----AILAGLS------PIYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGSVIARVG 86 (563)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHcCCC------chhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHHHHHHhc
Confidence 4556677777777777753 4455543 23579999999999999999987766522221 1 11111
Q ss_pred CCcc----------hHHHHHHHHHHHHHHhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhh
Q 010715 372 IGSR----------RVVQISTAFMIFFSIFGKFGAFFASIPLPIFAAIYCVLLGIVAAVGITFIQF 427 (503)
Q Consensus 372 ~~SR----------~~~~~ag~~Lillg~~pk~~alla~IP~~Vlgg~livlf~~i~~~Gi~~l~~ 427 (503)
.... .....+|++++++|++ |++.+...||.||+.|.+.-+--.+..+-++.+..
T Consensus 87 ~~~~~~~~~~~~a~~l~~l~Gi~~~~~g~l-rlG~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~G 151 (563)
T TIGR00815 87 LQYLFDCDAIRLAFTLTLLAGIFQVILGLL-RLGFLIEFLSHAVISGFMTGAAITIGLSQLKGLLG 151 (563)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1111 4567889999999976 79999999999999999887666677666666643
No 26
>PRK11660 putative transporter; Provisional
Probab=74.91 E-value=33 Score=38.32 Aligned_cols=118 Identities=11% Similarity=0.128 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHhhhhhhhHHHHHHHhhhCCCCCCcccccchhhhhhhHHHHhhhhCCCccccccccccchhccc------
Q 010715 297 SHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTTASVENVGLLGLT------ 370 (503)
Q Consensus 297 ~~il~~l~~~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~i~adGl~silagl~G~~~~tt~~~~n~G~i~~T------ 370 (503)
.-++.-+.+.++.+-++++ .+..++.++ .-|+.+.=+++++.++||+.+......++.-.....
T Consensus 31 ~D~iAGltv~~~~iPq~ma----yA~lag~pp------~~GLysa~~~~~vyal~Gss~~~~~Gp~a~~~~~~~~~~~~~ 100 (568)
T PRK11660 31 RDLIAGITVGIIAIPLAMA----LAIASGVPP------QYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPVSQQF 100 (568)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHcCCCh------HHHHHHHHHHHHHHHHhcCCCCcccChhHHHHHHHHHHHHHh
Confidence 4456667788888888775 345566442 237999999999999999998877653322111111
Q ss_pred CCC-cchHHHHHHHHHHHHHHhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHH
Q 010715 371 HIG-SRRVVQISTAFMIFFSIFGKFGAFFASIPLPIFAAIYCVLLGIVAAVGITFI 425 (503)
Q Consensus 371 g~~-SR~~~~~ag~~Lillg~~pk~~alla~IP~~Vlgg~livlf~~i~~~Gi~~l 425 (503)
+.. .-.....+|++.+++|++ |++.+...||.||+.|.+.-.--.+....++.+
T Consensus 101 ~~~~~~~~~~l~Gii~~l~gll-rlG~l~~fip~pVi~Gf~~g~al~I~~~Ql~~~ 155 (568)
T PRK11660 101 GLAGLLVATLMSGIILILMGLA-RLGRLIEYIPLSVTLGFTSGIGIVIATLQIKDF 155 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-hhhHHHhcCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 110 112356889999999987 699999999999999987754444555555444
No 27
>PF13792 Sulfate_tra_GLY: Sulfate transporter N-terminal domain with GLY motif
Probab=67.56 E-value=18 Score=29.84 Aligned_cols=59 Identities=24% Similarity=0.315 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCcceeeccchhh
Q 010715 47 WPQALLLAFQHYIVMLGTTVLISSTLVPL--MGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAF 118 (503)
Q Consensus 47 ~~~~illGlQh~l~m~~~~i~~P~ila~a--~gl~~~~~~~li~a~l~~sGI~Tllq~~~G~rlPiv~Gpsfa~ 118 (503)
++..++.|+.-.+. .+|.-++.+ +|+++ ...++.+.++.++.++||++--++.||+.+.
T Consensus 16 ~~~D~~aGltva~~------~iPq~~a~A~lAg~pp-------~~GLy~a~~~~liyalfG~s~~~~~Gp~a~~ 76 (84)
T PF13792_consen 16 LRGDLLAGLTVALV------AIPQGMAYALLAGVPP-------IYGLYAAIIPPLIYALFGSSRHMIVGPTAAM 76 (84)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHcCCCC-------CeeeHHHHHHHHHHhhccCCCccccChHHHH
Confidence 57889999987554 456655544 78987 5889999999999999998877888886543
No 28
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=61.75 E-value=31 Score=36.49 Aligned_cols=115 Identities=21% Similarity=0.210 Sum_probs=73.1
Q ss_pred ccchhHHHHHHHHHHhhhhhhhHHHHHHHhhhCCCCCCcccccchh----hhhhhHHHHhhhhCCCccccccccccchhc
Q 010715 293 IFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSI----GLQGIGMLVEGIFGSVVGTTASVENVGLLG 368 (503)
Q Consensus 293 ~f~~~~il~~l~~~lv~~~esiG~~~a~~~~~~~~~~~~~~~~r~i----~adGl~silagl~G~~~~tt~~~~n~G~i~ 368 (503)
+++++.+..-+...++....+..-+...++..+.. +++....+ .+.|+.++.-++.==.|..+.. ..-|..-
T Consensus 2 d~~~s~~~aG~va~lvg~tg~~aiv~qaa~a~g~s---~~q~~SWl~al~~~~Gl~~i~lSl~yR~Pi~~AW-StPGaAl 77 (378)
T PF03594_consen 2 DFSLSAVSAGFVAVLVGYTGPVAIVLQAAQAAGAS---PAQIASWLFALYLGMGLTSILLSLRYRMPIVTAW-STPGAAL 77 (378)
T ss_pred CCcHHHHHHHHHHHHhhccchHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhc-chHHHHH
Confidence 45566666667777777766666666666665543 33444443 4556667766665555655554 2223211
Q ss_pred ccCCCcc--h-----HHHHHHHHHHHHHHhhhHHHHhhhCCcchhhHHHH
Q 010715 369 LTHIGSR--R-----VVQISTAFMIFFSIFGKFGAFFASIPLPIFAAIYC 411 (503)
Q Consensus 369 ~Tg~~SR--~-----~~~~ag~~Lillg~~pk~~alla~IP~~Vlgg~li 411 (503)
+.....+ + +.+.++++++++|+.+-|..+...||.++..+++-
T Consensus 78 L~~~~~~~~~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLA 127 (378)
T PF03594_consen 78 LATSLPGYSFAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLA 127 (378)
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 1111111 1 46889999999999999999999999999888753
No 29
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=52.47 E-value=12 Score=39.87 Aligned_cols=21 Identities=43% Similarity=0.833 Sum_probs=12.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 010715 3 ETAGHHPPPPPQAAPPSLGLS 23 (503)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~ 23 (503)
.++|-.|||||+++||.+--.
T Consensus 230 ~s~~g~PPPPPP~PPp~~~~~ 250 (480)
T KOG2675|consen 230 ASAPGAPPPPPPAPPPAPFFA 250 (480)
T ss_pred ccCCCCCCCCCCCCCCccccc
Confidence 356666777776666665433
No 30
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=37.70 E-value=1e+02 Score=30.72 Aligned_cols=38 Identities=13% Similarity=-0.020 Sum_probs=23.1
Q ss_pred HHHHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 010715 67 LISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLF 104 (503)
Q Consensus 67 ~~P~ila~a~gl~~~~~~~li~a~l~~sGI~Tllq~~~ 104 (503)
..|..+.+..|.++++...+.....+...++.++..++
T Consensus 238 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 275 (379)
T TIGR00881 238 WSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWL 275 (379)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHH
Confidence 45666666678887766655555555555556555543
No 31
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=37.39 E-value=6.1e+02 Score=28.07 Aligned_cols=129 Identities=16% Similarity=0.123 Sum_probs=69.3
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCcce--eeccchhhH
Q 010715 42 HSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPT--VMGPSAAFT 119 (503)
Q Consensus 42 ~~~pp~~~~illGlQh~l~m~~~~i~~P~ila~a~gl~~~~~~~li~a~l~~sGI~Tllq~~~G~rlPi--v~Gpsfa~v 119 (503)
..+|..+..+..+.-..+...+.....|.+..+..|.++.....+.++.-+.+-+++++...+..|+.. ++.-+....
T Consensus 215 ~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~ 294 (524)
T PF05977_consen 215 RSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLF 294 (524)
T ss_pred hcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHH
Confidence 345555555555544444433334456887777788888777777777767777777777665444322 111111111
Q ss_pred HHHHHHHhhcCCCCCCCcchhhhccHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhcCCceehHHH
Q 010715 120 LPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFV 184 (503)
Q Consensus 120 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ga~liaGlv~illg~~g~~~~l~~~fpp~V~G~~i 184 (503)
....... +. ......+..+.++.|........ ..--.+++..|+.+.|=+.
T Consensus 295 a~~~~~l---al----------~~~~~~~~~~l~l~G~~~~~~~~-~~~t~~Q~~~P~~~~GRv~ 345 (524)
T PF05977_consen 295 ALALLLL---AL----------SPSFWLALIALFLAGAAWIIANS-SLNTLVQLSVPDWVRGRVF 345 (524)
T ss_pred HHHHHHH---hc----------chHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHhHHH
Confidence 1111111 10 01233445566677766655432 3335667888888877664
No 32
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=37.39 E-value=5.4e+02 Score=27.46 Aligned_cols=78 Identities=23% Similarity=0.296 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcceeeccchhhHHHHHHHHhhcCCCCCCCcchhhhccHHHHHHHHHHHHHHHHHHHH
Q 010715 85 RVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGY 164 (503)
Q Consensus 85 ~li~a~l~~sGI~Tllq~~~G~rlPiv~Gpsfa~v~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ga~liaGlv~illg~ 164 (503)
.-++..+++-|+++++-+++| ..|.- + |.. ...+....+. .=|. +...+|++.+++++
T Consensus 269 ~~~~r~l~adGl~~i~aglfG-~~p~t---~--~se-n~g~~~~T~~------------~sr~---~~~~~a~~~i~~~l 326 (415)
T TIGR00801 269 PRLHRGVLADGLATLLAGLFG-GFPNT---T--FAQ-NIGVIALTRV------------ASRW---VIVGAAVILIALGF 326 (415)
T ss_pred ccccchHHHhhHHHHHHHhcC-CCCCc---c--hhh-hheeeeecCC------------CchH---HHHHHHHHHHHHHH
Confidence 446789999999999999998 46651 1 111 0111111110 0111 46788888999999
Q ss_pred hhhHHhhhhhcCCceehHHH
Q 010715 165 SGAWGNLARFFSPIVIVPFV 184 (503)
Q Consensus 165 ~g~~~~l~~~fpp~V~G~~i 184 (503)
++.+..+.+.+|..|.|...
T Consensus 327 ~pk~~~l~~~iP~~vlgg~~ 346 (415)
T TIGR00801 327 FPKIAALITSIPSPVLGGAS 346 (415)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 87789999999977766544
No 33
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=31.05 E-value=4.6e+02 Score=27.60 Aligned_cols=95 Identities=24% Similarity=0.309 Sum_probs=54.5
Q ss_pred HhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCcceeeccchhhHHHHHHHHhhcCCCCCCCcchhhhccHHHHHHH
Q 010715 72 LVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGS 151 (503)
Q Consensus 72 la~a~gl~~~~~~~li~a~l~~sGI~Tllq~~~G~rlPiv~Gpsfa~v~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ga 151 (503)
+++..|.++++ ..-+..++.+-|++|++-+.+|. .|.. + |.--.- ..+..+. .+-+ .
T Consensus 255 ~~~~~~~~~~~-~~~~~r~l~~dg~~~~l~gl~G~-~~~t---~--~~en~g-~i~~t~v-----------~Sr~----~ 311 (389)
T PF00860_consen 255 VARIAGKDDPR-PPRIRRGLLADGLGTILAGLFGT-SPTT---T--YSENAG-GIAATGV-----------ASRR----V 311 (389)
T ss_dssp HHHHHTS-TCC-CCCHHHHHHHHHHHHHHHHHHT----EE---E---HHHHH-HHHHHTB-------------HH----H
T ss_pred HHHHhCCCCcc-chhhcccceeeeeeeeechhhcC-CCCc---c--ccccch-hhhhhcc-----------ccce----e
Confidence 34445655543 44578999999999999999986 5552 1 221111 1111110 0011 3
Q ss_pred HHHHHHHHHHHHHhhhHHhhhhhcCCce-ehHHHHHHHH
Q 010715 152 LIVSSFINIVLGYSGAWGNLARFFSPIV-IVPFVCVVGL 189 (503)
Q Consensus 152 ~liaGlv~illg~~g~~~~l~~~fpp~V-~G~~i~lIGl 189 (503)
.+.++++.+++++.+.+..+...+|..| .|..+.+.|.
T Consensus 312 ~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~~lv~~g~ 350 (389)
T PF00860_consen 312 GLTAGVILILFGLSPKFAPLFASIPSPVIGGPLLVLFGM 350 (389)
T ss_dssp HHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHhhHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 5677888888998888888999999766 5565555554
No 34
>PRK11663 regulatory protein UhpC; Provisional
Probab=30.78 E-value=1.8e+02 Score=30.63 Aligned_cols=41 Identities=5% Similarity=-0.055 Sum_probs=26.0
Q ss_pred HHHHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhcCC
Q 010715 67 LISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTR 107 (503)
Q Consensus 67 ~~P~ila~a~gl~~~~~~~li~a~l~~sGI~Tllq~~~G~r 107 (503)
..|..+.+..|+|.++.....+..-+...++.++..++..|
T Consensus 265 ~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr 305 (434)
T PRK11663 265 WGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDK 305 (434)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34666666678888766655555555566666766665444
No 35
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=29.39 E-value=42 Score=38.56 Aligned_cols=9 Identities=11% Similarity=-0.016 Sum_probs=4.3
Q ss_pred cccceeccC
Q 010715 35 QQLQYCIHS 43 (503)
Q Consensus 35 ~~~~y~v~~ 43 (503)
++..|+++-
T Consensus 616 pKK~~k~e~ 624 (1102)
T KOG1924|consen 616 PKKVYKPEV 624 (1102)
T ss_pred ccccCCCCC
Confidence 344555543
No 36
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=25.02 E-value=3.3e+02 Score=28.17 Aligned_cols=59 Identities=8% Similarity=0.204 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhcCC
Q 010715 47 WPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTR 107 (503)
Q Consensus 47 ~~~~illGlQh~l~m~~~~i~~P~ila~a~gl~~~~~~~li~a~l~~sGI~Tllq~~~G~r 107 (503)
|...+...+... .........|..+.+ .|.+.++...+.....++..+++++..+++.|
T Consensus 208 ~~l~~~~~~~~~-~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r 266 (393)
T PRK09705 208 WTLGVYFGLING-GYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARH 266 (393)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444444322 222233345666666 68888776666665555556666666555433
No 37
>PRK11375 allantoin permease; Provisional
Probab=22.88 E-value=9.8e+02 Score=26.10 Aligned_cols=25 Identities=8% Similarity=0.139 Sum_probs=12.8
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 010715 76 MGGGHGDKGRVIQSLLFMSGLNTLLQTL 103 (503)
Q Consensus 76 ~gl~~~~~~~li~a~l~~sGI~Tllq~~ 103 (503)
.|++- ...+-+.++...+.+++.++
T Consensus 55 ~GLs~---~~ai~ai~lG~~i~~~~~~l 79 (484)
T PRK11375 55 LGLST---FSIMLAIILSAFFIAAVMVL 79 (484)
T ss_pred ccchH---HHHHHHHHHHHHHHHHHHHH
Confidence 56665 33344555555555555543
No 38
>PRK03699 putative transporter; Provisional
Probab=21.91 E-value=4e+02 Score=27.42 Aligned_cols=39 Identities=8% Similarity=0.145 Sum_probs=26.2
Q ss_pred HHHHHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 010715 66 VLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLF 104 (503)
Q Consensus 66 i~~P~ila~a~gl~~~~~~~li~a~l~~sGI~Tllq~~~ 104 (503)
...|..+.+..|+|.++...+.+...+...++.++-.++
T Consensus 226 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l 264 (394)
T PRK03699 226 SWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFI 264 (394)
T ss_pred HHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 345777767689998777776666556666666665544
No 39
>TIGR00893 2A0114 d-galactonate transporter.
Probab=21.72 E-value=1.9e+02 Score=28.69 Aligned_cols=37 Identities=14% Similarity=0.001 Sum_probs=20.7
Q ss_pred HHHHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 010715 67 LISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTL 103 (503)
Q Consensus 67 ~~P~ila~a~gl~~~~~~~li~a~l~~sGI~Tllq~~ 103 (503)
..|..+.+..|.++.+...+.....+...++.++-.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 273 (399)
T TIGR00893 237 WFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGR 273 (399)
T ss_pred HHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3466666667877666555544444444455554443
No 40
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=21.51 E-value=2.5e+02 Score=28.08 Aligned_cols=23 Identities=9% Similarity=0.056 Sum_probs=13.6
Q ss_pred HHHHHHHhhhcCCCcchhHHHHH
Q 010715 66 VLISSTLVPLMGGGHGDKGRVIQ 88 (503)
Q Consensus 66 i~~P~ila~a~gl~~~~~~~li~ 88 (503)
...|..+.+..|.++++...+..
T Consensus 246 ~~~~~~~~~~~g~~~~~~~~~~~ 268 (366)
T TIGR00886 246 SIFAMFFKDQFGLSKVTAGAYAS 268 (366)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHH
Confidence 34566666667888765544433
No 41
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=21.42 E-value=4e+02 Score=26.65 Aligned_cols=20 Identities=10% Similarity=0.140 Sum_probs=12.1
Q ss_pred HHHHHhhhcCCCcchhHHHH
Q 010715 68 ISSTLVPLMGGGHGDKGRVI 87 (503)
Q Consensus 68 ~P~ila~a~gl~~~~~~~li 87 (503)
.|..+.+..|.++++...+.
T Consensus 222 ~~~~~~~~~g~~~~~~g~~~ 241 (375)
T TIGR00899 222 MPLLIIHELGLPDKLAGLMM 241 (375)
T ss_pred hHHHHHHHcCCCHHHHHHHH
Confidence 46666666788876554433
No 42
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=21.13 E-value=2.9e+02 Score=27.77 Aligned_cols=55 Identities=13% Similarity=0.083 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHHH
Q 010715 47 WPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQT 102 (503)
Q Consensus 47 ~~~~illGlQh~l~m~~~~i~~P~ila~a~gl~~~~~~~li~a~l~~sGI~Tllq~ 102 (503)
+...+..++.+.. ........|..+.+..|.++++...+.....+...++.++-.
T Consensus 209 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g 263 (385)
T TIGR00710 209 WGYALIYGASFGG-FFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNG 263 (385)
T ss_pred HHHHHHHHHHHHH-HHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444432 222233447666666788876655444443333333443333
No 43
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=20.01 E-value=8.9e+02 Score=26.21 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcceeeccchhhHHHHHHHHhhcCCCCCCCcchhhhccHHHHHHHHHHHHHHHHHHHH
Q 010715 85 RVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGY 164 (503)
Q Consensus 85 ~li~a~l~~sGI~Tllq~~~G~rlPiv~Gpsfa~v~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ga~liaGlv~illg~ 164 (503)
.-+..++.+-|++|++-+.+| ..|. .+|+-=...+ ...+.+ . |. .+..+|++.+++|+
T Consensus 275 ~~l~rgi~~dGi~s~laglfg-~~p~---tt~sqNvGvi---~~TgV~----------S--R~---v~~~aa~ilillgl 332 (433)
T PRK11412 275 TRYRRSFVATGFMTLITVPLA-VIPF---SPFVSSIGLL---TQTGDY----------R--RR---SFIYGSVMCLLVAL 332 (433)
T ss_pred cccccchhhccHHHHHHHhcC-CCCC---Cchhhhhhhh---hhcCCc----------h--hH---HHHHHHHHHHHHHH
Confidence 357889999999999999997 5554 2221111111 111110 1 11 25678889999999
Q ss_pred hhhHHhhhhhcCCceehHHH
Q 010715 165 SGAWGNLARFFSPIVIVPFV 184 (503)
Q Consensus 165 ~g~~~~l~~~fpp~V~G~~i 184 (503)
++.+..+...+|.-|.|.+.
T Consensus 333 ~PK~~alia~IP~pVlGg~~ 352 (433)
T PRK11412 333 IPALTRLFCSIPLPVSSAVM 352 (433)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 98889999999976666543
Done!