Query 010715
Match_columns 503
No_of_seqs 182 out of 1629
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 12:44:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010715.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010715hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 55.1 15 0.0011 33.6 8.4 37 66-104 46-82 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 20.1 2.7E+02 0.019 24.3 13.6 38 67-104 271-308 (447)
3 d1pv7a_ f.38.1.2 (A:) Lactose 7.4 2.2E+02 0.016 24.1 5.2 41 69-109 31-75 (417)
4 d2eiaa2 a.73.1.1 (A:17-147) EI 5.3 1.6E+02 0.012 23.2 2.4 17 47-63 113-129 (131)
5 d2axtz1 f.17.5.1 (Z:1-62) Phot 4.9 4.2E+02 0.03 17.9 4.1 35 414-448 15-51 (62)
6 d1uk5a_ a.7.7.1 (A:) BAG-famil 4.4 2.1E+02 0.015 21.7 2.5 25 5-29 3-27 (111)
7 d1pv7a_ f.38.1.2 (A:) Lactose 3.9 7.6E+02 0.055 20.1 6.6 15 169-183 335-349 (417)
8 d2pxrc1 a.73.1.1 (C:1-145) HIV 3.4 1.9E+02 0.014 23.2 1.4 15 47-61 130-144 (145)
9 d2e74e1 f.23.24.1 (E:1-32) Pet 3.2 4.4E+02 0.032 14.8 2.5 15 234-248 12-26 (32)
10 d3cx5c1 f.32.1.1 (C:262-385) M 3.2 6.3E+02 0.046 18.9 4.6 42 394-436 17-58 (124)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=55.13 E-value=15 Score=33.61 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=29.1
Q ss_pred HHHHHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 010715 66 VLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLF 104 (503)
Q Consensus 66 i~~P~ila~a~gl~~~~~~~li~a~l~~sGI~Tllq~~~ 104 (503)
++.|.+ .+ .|++++|...+.+...+..+++.++-+.+
T Consensus 46 ~~~p~~-~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~l 82 (447)
T d1pw4a_ 46 LAMPYL-VE-QGFSRGDLGFALSGISIAYGFSKFIMGSV 82 (447)
T ss_dssp HHHHHT-TS-STTCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344644 33 79999999999999999999999888763
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=20.13 E-value=2.7e+02 Score=24.32 Aligned_cols=38 Identities=11% Similarity=-0.090 Sum_probs=28.1
Q ss_pred HHHHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 010715 67 LISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLF 104 (503)
Q Consensus 67 ~~P~ila~a~gl~~~~~~~li~a~l~~sGI~Tllq~~~ 104 (503)
..|..+.+..+.+.++.........+...+++++..++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 308 (447)
T d1pw4a_ 271 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM 308 (447)
T ss_dssp HHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhh
Confidence 34666666678888887777777777777788877764
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=7.37 E-value=2.2e+02 Score=24.06 Aligned_cols=41 Identities=22% Similarity=0.151 Sum_probs=31.4
Q ss_pred HHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHH----hcCCcc
Q 010715 69 SSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTL----FGTRLP 109 (503)
Q Consensus 69 P~ila~a~gl~~~~~~~li~a~l~~sGI~Tllq~~----~G~rlP 109 (503)
|..+.+..|+++.|...+.+...+...++..+-+. +|.|..
T Consensus 31 ~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~ 75 (417)
T d1pv7a_ 31 PIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKY 75 (417)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH
Confidence 44566778999999888888888888888888775 565543
No 4
>d2eiaa2 a.73.1.1 (A:17-147) EIAV capsid protein p26 {Equine infectious anemia virus [TaxId: 11665]}
Probab=5.26 E-value=1.6e+02 Score=23.19 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010715 47 WPQALLLAFQHYIVMLG 63 (503)
Q Consensus 47 ~~~~illGlQh~l~m~~ 63 (503)
.++-+++|||++.-|..
T Consensus 113 yrrWiIlgL~k~vkmy~ 129 (131)
T d2eiaa2 113 YRQWIIEAMSEGIKVMI 129 (131)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 45779999999988864
No 5
>d2axtz1 f.17.5.1 (Z:1-62) Photosystem II reaction center protein Z, PsbZ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.93 E-value=4.2e+02 Score=17.89 Aligned_cols=35 Identities=17% Similarity=0.419 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHH--hhcCCCCccchhhHHHHHHHHhh
Q 010715 414 LGIVAAVGITFI--QFANNNSMRNIYILGLSLFLGIS 448 (503)
Q Consensus 414 f~~i~~~Gi~~l--~~~~~~~~Rn~~Ivg~sl~~Gl~ 448 (503)
++++.+.|+-.. .-.+|++++|..-.|.++.+|+-
T Consensus 15 ~SF~lVVgVPV~~ASP~gW~~sK~lvfsG~~~W~~LV 51 (62)
T d2axtz1 15 LSFVMVIGVPVAYASPQDWDRSKQLIFLGSGLWIALV 51 (62)
T ss_dssp HHHHHHHHHHHHHHCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHheeceEEEECCCcccccCceEEEchhHHHHHH
Confidence 444455555444 45789888888889999988875
No 6
>d1uk5a_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.40 E-value=2.1e+02 Score=21.72 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=13.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC
Q 010715 5 AGHHPPPPPQAAPPSLGLSRGPIWT 29 (503)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (503)
.+..+.|+++++|++...++.+.+|
T Consensus 3 s~s~~~p~~~~~p~~~~~~~p~~~P 27 (111)
T d1uk5a_ 3 SGSSGAPAEPAAPKSGEAETPPKHP 27 (111)
T ss_dssp CCCCCCCCCCCCCCCCSSSSCCCCH
T ss_pred CCCCCCCCCCCCCCCcCcCCCCCCc
Confidence 3445566666666666655544444
No 7
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=3.89 E-value=7.6e+02 Score=20.11 Aligned_cols=15 Identities=7% Similarity=0.016 Sum_probs=9.5
Q ss_pred HhhhhhcCCceehHH
Q 010715 169 GNLARFFSPIVIVPF 183 (503)
Q Consensus 169 ~~l~~~fpp~V~G~~ 183 (503)
..+.+.+|+...|..
T Consensus 335 ~~~~~~~~~~~~~~~ 349 (417)
T d1pv7a_ 335 KYITSQFEVRFSATI 349 (417)
T ss_dssp HHHHHHSCGGGHHHH
T ss_pred HHHHHHCCHhHHHHH
Confidence 556677777665543
No 8
>d2pxrc1 a.73.1.1 (C:1-145) HIV-1 capsid protein {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=3.43 E-value=1.9e+02 Score=23.18 Aligned_cols=15 Identities=13% Similarity=0.434 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHH
Q 010715 47 WPQALLLAFQHYIVM 61 (503)
Q Consensus 47 ~~~~illGlQh~l~m 61 (503)
.++-+++|||-..=|
T Consensus 130 ykrWiilgl~k~Vkm 144 (145)
T d2pxrc1 130 YKRWIILGLNKIVRM 144 (145)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc
Confidence 357799999976544
No 9
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.20 E-value=4.4e+02 Score=14.82 Aligned_cols=15 Identities=47% Similarity=0.556 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHH
Q 010715 234 FALLFCIGVVWAFAA 248 (503)
Q Consensus 234 ~avLigivvG~i~a~ 248 (503)
.+...|+.+|.+++.
T Consensus 12 ialffgiavgiifai 26 (32)
T d2e74e1 12 IALFFGIAVGIIFAI 26 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhheeeE
Confidence 456677777777653
No 10
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.19 E-value=6.3e+02 Score=18.92 Aligned_cols=42 Identities=17% Similarity=0.217 Sum_probs=24.8
Q ss_pred HHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhhcCCCCccch
Q 010715 394 FGAFFASIPLPIFAAIYCVLLGIVAAVGITFIQFANNNSMRNI 436 (503)
Q Consensus 394 ~~alla~IP~~Vlgg~livlf~~i~~~Gi~~l~~~~~~~~Rn~ 436 (503)
+-+++.+||+-..| ++....+.+...-+-.+++.+..+.|.+
T Consensus 17 ~YaiLRsiP~k~~G-vl~~~~si~il~~lP~l~~s~~~s~~~r 58 (124)
T d3cx5c1 17 FYAILRSIPDKLLG-VITMFAAILVLLVLPFTDRSVVRGNTFK 58 (124)
T ss_dssp HHHHHHTSSSHHHH-HHHHHHHHHGGGGHHHHCCCSSSSSTTC
T ss_pred HHHHHhcCCcchhh-hHHHHHHHHHHHHHHHHhhhhhhhcchh
Confidence 45789999998654 5444444444444555555555544544
Done!