BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010717
(503 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 396 QYADAIKWLSWAVILLEKSGDMAT--MMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT 453
QY + WL L EK + ++ A CY ++ EY KAV C K L D
Sbjct: 290 QYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349
Query: 454 NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK 500
N L +R M +++ D VL+++P N+ AR I K
Sbjct: 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 396 QYADAIKWLSWAVILLEKSGDMAT--MMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT 453
QY + WL L EK + ++ A CY ++ EY KAV C K L D
Sbjct: 290 QYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349
Query: 454 NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK 500
N L +R M +++ D VL+++P N+ AR I K
Sbjct: 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQK 396
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADC 444
KNKG + K G Y A++ + AV ++ + A + S RA+C ++ E+++A+ DC
Sbjct: 17 KNKGNEYFKKGDYPTAMRHYNEAV---KRDPENAILY---SNRAACLTKLMEFQRALDDC 70
Query: 445 SKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTI 495
+ D + +++A +M ++ L++DPSN AR +
Sbjct: 71 DTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADC 444
KNKG + + G Y A+K + A+ K ++ S RA+CY ++ E++ A+ DC
Sbjct: 20 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDA------KLYSNRAACYTKLLEFQLALKDC 73
Query: 445 SKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHR 497
+ ++ + T + ++A E+M+ Y + + L +D S + A R
Sbjct: 74 EECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQR 126
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADC 444
+ +G + K G Y A+ + A+ L D A + RA+C+ ++ +Y KA +
Sbjct: 32 RKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHR---NRAACHLKLEDYDKAETEA 88
Query: 445 SKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT 499
SK +E+D +V L +R+ E + + DL+ + ++P N++ + + ++
Sbjct: 89 SKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 387 KGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLS--TRASCYKEVGEYKKAVADC 444
+G Q QY + WL + + A + + S A C+ ++ + A+ C
Sbjct: 160 EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESC 219
Query: 445 SKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTI 495
+K LE D N L +R + ++ ++L D + VL++ P+N+ A++ +
Sbjct: 220 NKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQL 270
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 396 QYADAIKWLSWAVILLEKSGDMATMMEVLS--TRASCYKEVGEYKKAVADCSKVLEQDDT 453
QY + WL + + A + + S A C+ ++ + A+ C+K LE D
Sbjct: 169 QYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228
Query: 454 NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTI 495
N L +R + ++ ++L D + VL++ P+N+ A++ +
Sbjct: 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQL 270
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADC 444
K+KG + +Y DAIK+ +WA+ L E S ++CY VG+ KK V
Sbjct: 10 KDKGNQFFRNKKYDDAIKYYNWALELKEDPV-------FYSNLSACYVSVGDLKKVVEMS 62
Query: 445 SKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTV 481
+K LE VL++RA E + K+ DL +
Sbjct: 63 TKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVL 99
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 10/112 (8%)
Query: 397 YADAIKWLSWAVILLEKSGDMATM------MEVLSTRASCYKEVGEYKKAVADCSKVLEQ 450
Y DA+ L +IL EK G+ + + + + + CY +G+ +A S+VL++
Sbjct: 34 YRDALTRLD-TLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92
Query: 451 DDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502
++TN L +RA + K EDL+ +L+ P+ A S + R K+V
Sbjct: 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA---AASVVAREMKIV 141
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Query: 385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADC 444
KN G K G Y AI++ A LE + A+ L + Y + G+Y+KA+
Sbjct: 13 KNLGNAYYKQGDYQKAIEYYQKA---LELDPNNASAWYNL---GNAYYKQGDYQKAIEYY 66
Query: 445 SKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTI 495
K LE D N +R Y Y+ ED + L++DP+N A+ +
Sbjct: 67 QKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNL 117
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 30/73 (41%)
Query: 416 DMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGA 475
D E + Y + G+Y+KA+ K LE D N S Y Y+
Sbjct: 4 DPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAI 63
Query: 476 EDLRTVLKIDPSN 488
E + L++DP+N
Sbjct: 64 EYYQKALELDPNN 76
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 35.0 bits (79), Expect = 0.093, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 31/69 (44%)
Query: 427 RASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDP 486
RA+ Y ++G Y AV DC + + D + L S+ K+ + L++DP
Sbjct: 52 RAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDP 111
Query: 487 SNRIARSTI 495
N +S +
Sbjct: 112 DNETYKSNL 120
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 422 EVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTV 481
E+ RA C+ + GE +KA++D + + N + + LY + ++L ++R
Sbjct: 178 ELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237
Query: 482 LKIDPSNRIARS---TIHRLTKMVD 503
LK+D ++ + + +L K+++
Sbjct: 238 LKLDQDHKRCFAHYKQVKKLNKLIE 262
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 394 AGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT 453
AGQ ADA+ AV GD + RA+ + +G+ K A+ D +KV++
Sbjct: 39 AGQLADALSQFHAAV-----DGDPDNYI-AYYRRATVFLAMGKSKAALPDLTKVIQLKMD 92
Query: 454 NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488
+ +QR L K +D + VLK +PS
Sbjct: 93 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE 127
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 407 AVILLEKSGDMATM-MEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLY 465
A+ L+K ++ E+ RA C+ + GE +KA++D + + N + + LY
Sbjct: 162 AIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLY 221
Query: 466 ESMEKYKLGAEDLRTVLKIDPSNRIARSTIH-----RLTKMVD 503
+ ++L ++R LK+D ++ R H +L K+++
Sbjct: 222 YQLGDHELSLSEVRECLKLDQDHK--RCFAHYKQVKKLNKLIE 262
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 394 AGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT 453
AGQ ADA+ AV GD + RA+ + G+ K A+ D +KV++
Sbjct: 39 AGQLADALSQFHAAV-----DGDPDNYI-AYYRRATVFLAXGKSKAALPDLTKVIQLKXD 92
Query: 454 NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488
+ +QR L K +D + VLK +PS
Sbjct: 93 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE 127
>pdb|2J3H|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Apo Form
pdb|2J3H|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Apo Form
pdb|2J3I|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Binary Complex
pdb|2J3I|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Binary Complex
pdb|2J3J|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex I
pdb|2J3J|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex I
pdb|2J3K|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex Ii
pdb|2J3K|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex Ii
Length = 345
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 4 NYNNKSKVSTPGMLNNFNFDLGVGSNKPASLIDQRNRXXXXXXXXXXXXXXXXQP--KPA 61
N N +++ GM++ +N + G + +++I +RNR P
Sbjct: 244 NMNMHGRIAVCGMISQYNLENQEGVHNLSNIIYKRNRIQGFVVSDFYDKYSKFLEFVLPH 303
Query: 62 WQPSKPSWTHQPAQTGIESAPVSMVGDIHGK 92
+ K ++ A G+E AP ++VG HGK
Sbjct: 304 IREGKITYVEDVAD-GLEKAPEALVGLFHGK 333
>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide
pdb|4AIF|B Chain B, Aip Tpr Domain In Complex With Human Hsp90 Peptide
Length = 144
Score = 32.7 bits (73), Expect = 0.42, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 392 QKAGQYADAIKWLSWAVILLEKSGDM------ATMMEVLSTRASCYKEVGEYKKAVADCS 445
+ A +Y DAI L + + E+ G + +L C V EY + + CS
Sbjct: 26 EAAAKYYDAIACLK-NLQMKEQPGSPEWIQLDQQITPLLLNYCQCKLVVEEYYEVLDHCS 84
Query: 446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPS 487
+L + D NV +R + ++ + D VL++DP+
Sbjct: 85 SILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDPA 126
>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide
pdb|4APO|B Chain B, Aip Tpr Domain In Complex With Human Tomm20 Peptide
Length = 165
Score = 32.7 bits (73), Expect = 0.46, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 392 QKAGQYADAIKWLSWAVILLEKSGDM------ATMMEVLSTRASCYKEVGEYKKAVADCS 445
+ A +Y DAI L + + E+ G + +L C V EY + + CS
Sbjct: 32 EAAAKYYDAIACLK-NLQMKEQPGSPEWIQLDQQITPLLLNYCQCKLVVEEYYEVLDHCS 90
Query: 446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPS 487
+L + D NV +R + ++ + D VL++DP+
Sbjct: 91 SILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDPA 132
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 8/105 (7%)
Query: 385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDM-ATMMEVLSTRASCYKEVGEYKKAVAD 443
++KG+ + KAG+Y S AV+LLE+ D A ++V Y + G +
Sbjct: 12 RDKGISHAKAGRY-------SQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTEL 64
Query: 444 CSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488
+ L NV V L Y ++KY L L V + +P N
Sbjct: 65 LERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN 109
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 8/105 (7%)
Query: 385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDM-ATMMEVLSTRASCYKEVGEYKKAVAD 443
++KG+ + KAG+Y S AV+LLE+ D A ++V Y + G +
Sbjct: 12 RDKGISHAKAGRY-------SQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTEL 64
Query: 444 CSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488
+ L NV V L Y ++KY L L V + +P N
Sbjct: 65 LERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN 109
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 8/105 (7%)
Query: 385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDM-ATMMEVLSTRASCYKEVGEYKKAVAD 443
++KG+ + KAG+Y S AV+LLE+ D A ++V Y + G +
Sbjct: 12 EDKGISHAKAGRY-------SQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTEL 64
Query: 444 CSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488
+ L NV V L Y ++KY L L V + +P N
Sbjct: 65 LERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN 109
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 8/105 (7%)
Query: 385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDM-ATMMEVLSTRASCYKEVGEYKKAVAD 443
++KG+ + KAG+Y S AV++LE+ D A +EV Y + G +
Sbjct: 12 RDKGISHAKAGRY-------SEAVVMLEQVYDADAFDVEVALHLGIAYVKTGAVDRGTEL 64
Query: 444 CSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488
+ + N+ V L Y ++KY L L V + +P N
Sbjct: 65 LERSIADAPDNIKVATVLGLTYVQVQKYDLAVPLLVKVAEANPVN 109
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 32.0 bits (71), Expect = 0.75, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 425 STRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDL 478
S RA+ ++ + +A+ADC+K +E+D V +++A ++++Y E L
Sbjct: 42 SNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL 95
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 422 EVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTV 481
E+ RA C+ + GE +KA++D + N + + LY + ++L ++R
Sbjct: 155 ELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVREC 214
Query: 482 LKIDPSNRIARSTIH-----RLTKMVD 503
LK+D ++ R H +L K+++
Sbjct: 215 LKLDQDHK--RCFAHYKQVKKLNKLIE 239
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 30/66 (45%)
Query: 425 STRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKI 484
+ RA CY ++ + ++A+ADC + LE D +V ME Y +L+ +
Sbjct: 47 TNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106
Query: 485 DPSNRI 490
R+
Sbjct: 107 AKEQRL 112
>pdb|3I0P|A Chain A, Crystal Structure Of Malate Dehydrogenase From Entamoeba
Histolytica
Length = 365
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 412 EKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDD 452
EKSG + ++ C++++ E+KK V D ++ L D
Sbjct: 275 EKSGKFSLGHFFIAINVECFRDLNEFKKNVGDINRTLRNTD 315
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 391 NQKAGQYADAIKWL----SWA-VILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445
N+ +Y +A+ + W ILL+K ++ + A+CY + +Y KA+ S
Sbjct: 55 NEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL--NLATCYNKNKDYPKAIDHAS 112
Query: 446 KVLEQDDTNVSVLVQ 460
KVL+ D NV L +
Sbjct: 113 KVLKIDKNNVKALYK 127
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 30/66 (45%)
Query: 425 STRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKI 484
+ RA CY ++ + ++A+ADC + LE D +V ME Y +L+ +
Sbjct: 42 TNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 101
Query: 485 DPSNRI 490
R+
Sbjct: 102 AKEQRL 107
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 425 STRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDL 478
S RA+ ++ + +A+ADC+K +E+D V +++A ++++Y E L
Sbjct: 177 SNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL 230
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 396 QYADAIKWLSWAVILLEKS--GDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT 453
+Y DA L+ A+ + EK+ D + L+ A Y + G+YK+A C + LE +
Sbjct: 84 KYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 143
Query: 454 --------------NVSVLVQRALLYESMEKY 471
N+++L Q YE +E Y
Sbjct: 144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYY 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.127 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,354,579
Number of Sequences: 62578
Number of extensions: 363526
Number of successful extensions: 744
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 702
Number of HSP's gapped (non-prelim): 42
length of query: 503
length of database: 14,973,337
effective HSP length: 103
effective length of query: 400
effective length of database: 8,527,803
effective search space: 3411121200
effective search space used: 3411121200
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (25.0 bits)