Query 010717
Match_columns 503
No_of_seqs 262 out of 1627
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 03:45:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010717.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010717hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0553 TPR repeat-containing 99.8 2.2E-18 4.8E-23 173.9 13.2 120 377-502 77-196 (304)
2 KOG0548 Molecular co-chaperone 99.6 1E-15 2.2E-20 163.6 13.5 116 380-501 357-472 (539)
3 KOG0543 FKBP-type peptidyl-pro 99.6 1.6E-15 3.4E-20 158.3 14.0 124 379-502 206-338 (397)
4 PRK15359 type III secretion sy 99.6 3E-14 6.5E-19 129.4 15.1 114 383-502 26-139 (144)
5 PLN03088 SGT1, suppressor of 99.6 3.6E-14 7.8E-19 146.8 16.4 115 382-502 3-117 (356)
6 KOG4234 TPR repeat-containing 99.6 1.5E-14 3.2E-19 140.4 12.2 123 379-502 93-215 (271)
7 TIGR02552 LcrH_SycD type III s 99.5 2.5E-13 5.3E-18 118.4 15.2 117 380-502 16-132 (135)
8 KOG0548 Molecular co-chaperone 99.4 3.8E-13 8.3E-18 144.1 10.9 113 381-499 2-114 (539)
9 PRK15363 pathogenicity island 99.4 3.4E-12 7.4E-17 119.5 15.1 116 380-501 34-149 (157)
10 KOG0547 Translocase of outer m 99.4 5.8E-13 1.3E-17 141.7 11.2 122 370-498 104-227 (606)
11 KOG4648 Uncharacterized conser 99.4 3.2E-13 7E-18 139.2 8.7 116 381-502 97-212 (536)
12 PRK10370 formate-dependent nit 99.4 8.7E-12 1.9E-16 119.4 15.2 113 380-498 72-187 (198)
13 TIGR02795 tol_pal_ybgF tol-pal 99.4 1.8E-11 3.9E-16 102.8 14.5 114 381-497 2-118 (119)
14 PRK11189 lipoprotein NlpI; Pro 99.4 2.4E-11 5.2E-16 122.3 17.5 108 377-490 60-167 (296)
15 KOG0551 Hsp90 co-chaperone CNS 99.4 3.8E-12 8.3E-17 130.7 11.5 128 364-493 60-191 (390)
16 KOG0550 Molecular chaperone (D 99.3 3.3E-12 7.2E-17 133.9 9.7 120 380-502 248-367 (486)
17 cd00189 TPR Tetratricopeptide 99.3 4.9E-11 1.1E-15 90.8 11.8 99 383-487 2-100 (100)
18 TIGR00990 3a0801s09 mitochondr 99.3 8.9E-11 1.9E-15 128.5 16.5 114 380-499 330-443 (615)
19 PRK02603 photosystem I assembl 99.2 2.3E-10 4.9E-15 105.9 15.7 112 375-489 29-154 (172)
20 TIGR00990 3a0801s09 mitochondr 99.2 1E-10 2.2E-15 128.1 15.1 115 380-500 364-478 (615)
21 PF13414 TPR_11: TPR repeat; P 99.2 4.2E-11 9.1E-16 94.0 8.0 66 421-486 3-69 (69)
22 KOG0376 Serine-threonine phosp 99.2 1.3E-11 2.8E-16 131.4 6.4 117 380-502 3-119 (476)
23 KOG4626 O-linked N-acetylgluco 99.2 7E-11 1.5E-15 128.8 11.8 114 380-499 353-466 (966)
24 KOG4626 O-linked N-acetylgluco 99.2 1E-10 2.3E-15 127.5 12.2 116 379-500 386-501 (966)
25 CHL00033 ycf3 photosystem I as 99.2 1.3E-09 2.7E-14 100.2 17.2 114 374-490 28-155 (168)
26 TIGR02521 type_IV_pilW type IV 99.2 9.8E-10 2.1E-14 99.5 16.1 113 382-498 100-212 (234)
27 TIGR02521 type_IV_pilW type IV 99.2 1.6E-09 3.5E-14 98.1 16.7 115 380-500 64-180 (234)
28 PRK11189 lipoprotein NlpI; Pro 99.2 9.3E-10 2E-14 110.8 16.1 116 380-501 97-283 (296)
29 PRK09782 bacteriophage N4 rece 99.1 6.6E-10 1.4E-14 129.0 15.7 114 381-500 609-722 (987)
30 PRK12370 invasion protein regu 99.1 9.3E-10 2E-14 119.8 15.8 114 380-499 337-451 (553)
31 PF13414 TPR_11: TPR repeat; P 99.1 3E-10 6.4E-15 89.2 8.8 67 380-452 2-69 (69)
32 TIGR03302 OM_YfiO outer membra 99.1 1.7E-09 3.7E-14 103.2 15.6 115 379-496 31-156 (235)
33 KOG0545 Aryl-hydrocarbon recep 99.1 6.4E-10 1.4E-14 111.1 12.9 122 379-500 176-310 (329)
34 PRK15179 Vi polysaccharide bio 99.1 1.6E-09 3.4E-14 121.8 15.8 115 380-500 85-199 (694)
35 PF12895 Apc3: Anaphase-promot 99.1 4.7E-10 1E-14 92.1 8.5 83 394-481 2-84 (84)
36 PRK12370 invasion protein regu 99.1 1.5E-09 3.3E-14 118.2 14.7 107 380-492 294-409 (553)
37 KOG1126 DNA-binding cell divis 99.1 1.9E-10 4E-15 126.0 6.6 113 380-498 420-532 (638)
38 KOG1125 TPR repeat-containing 99.1 2.3E-10 5.1E-15 123.8 7.1 114 368-487 417-530 (579)
39 PRK10803 tol-pal system protei 99.0 6.7E-09 1.5E-13 104.3 16.6 117 381-500 142-262 (263)
40 PRK10049 pgaA outer membrane p 99.0 2.1E-09 4.5E-14 121.4 13.9 144 347-500 17-161 (765)
41 KOG4642 Chaperone-dependent E3 99.0 6.9E-10 1.5E-14 110.3 8.6 116 380-501 9-129 (284)
42 KOG1126 DNA-binding cell divis 99.0 1E-09 2.3E-14 120.2 10.7 117 380-502 488-604 (638)
43 PRK15359 type III secretion sy 99.0 3.6E-09 7.8E-14 96.2 12.3 92 401-501 13-104 (144)
44 PRK10370 formate-dependent nit 99.0 5.5E-09 1.2E-13 100.2 13.9 101 394-500 52-155 (198)
45 PRK09782 bacteriophage N4 rece 99.0 8.2E-09 1.8E-13 120.0 17.0 109 386-501 581-689 (987)
46 KOG0624 dsRNA-activated protei 99.0 2.6E-09 5.7E-14 110.8 11.3 115 379-499 36-153 (504)
47 PRK15174 Vi polysaccharide exp 99.0 5.9E-09 1.3E-13 116.1 14.7 107 380-492 245-355 (656)
48 PRK11447 cellulose synthase su 99.0 4.7E-09 1E-13 123.4 14.5 119 380-498 302-428 (1157)
49 PF13432 TPR_16: Tetratricopep 99.0 2.2E-09 4.8E-14 83.6 7.9 64 426-489 2-65 (65)
50 PRK15331 chaperone protein Sic 99.0 7.8E-09 1.7E-13 97.7 12.9 112 379-497 35-146 (165)
51 PF13429 TPR_15: Tetratricopep 99.0 3.5E-09 7.6E-14 104.3 11.1 116 380-501 145-260 (280)
52 PRK15174 Vi polysaccharide exp 99.0 9.2E-09 2E-13 114.6 15.2 111 384-500 215-329 (656)
53 TIGR02917 PEP_TPR_lipo putativ 99.0 1.9E-08 4.1E-13 108.8 17.0 114 379-498 123-236 (899)
54 PF13512 TPR_18: Tetratricopep 98.9 1.3E-08 2.8E-13 94.2 13.1 116 379-497 8-141 (142)
55 COG3063 PilF Tfp pilus assembl 98.9 4.1E-09 9E-14 104.3 10.4 131 362-499 51-183 (250)
56 TIGR02552 LcrH_SycD type III s 98.9 1.1E-08 2.5E-13 89.1 11.6 94 402-501 4-97 (135)
57 PRK15179 Vi polysaccharide bio 98.9 1.3E-08 2.9E-13 114.5 14.5 104 380-489 119-222 (694)
58 COG3063 PilF Tfp pilus assembl 98.9 1.1E-08 2.4E-13 101.3 12.1 133 364-502 88-220 (250)
59 PRK10049 pgaA outer membrane p 98.9 3.7E-08 8E-13 111.4 17.1 113 380-498 358-470 (765)
60 TIGR02917 PEP_TPR_lipo putativ 98.9 3.4E-08 7.3E-13 106.8 16.0 114 380-500 769-882 (899)
61 PRK11447 cellulose synthase su 98.9 1.8E-08 3.9E-13 118.5 14.9 117 380-496 384-536 (1157)
62 TIGR03302 OM_YfiO outer membra 98.9 5.1E-08 1.1E-12 93.0 15.3 118 381-501 70-215 (235)
63 KOG1173 Anaphase-promoting com 98.9 1.5E-08 3.2E-13 110.0 12.7 119 381-499 414-533 (611)
64 PF13371 TPR_9: Tetratricopept 98.9 1.3E-08 2.8E-13 80.5 8.5 71 428-498 2-72 (73)
65 PF13525 YfiO: Outer membrane 98.9 8.2E-08 1.8E-12 91.9 15.7 120 380-502 4-140 (203)
66 PRK11788 tetratricopeptide rep 98.9 7.1E-08 1.5E-12 97.8 16.1 107 381-488 141-247 (389)
67 PRK11788 tetratricopeptide rep 98.8 6.5E-08 1.4E-12 98.1 15.5 111 382-498 108-223 (389)
68 KOG0547 Translocase of outer m 98.8 1.2E-08 2.7E-13 109.3 10.3 112 379-496 324-435 (606)
69 COG4235 Cytochrome c biogenesi 98.8 3.5E-08 7.6E-13 100.4 13.1 111 380-496 155-268 (287)
70 KOG1155 Anaphase-promoting com 98.8 4.9E-08 1.1E-12 104.3 14.5 117 380-502 363-479 (559)
71 COG5010 TadD Flp pilus assembl 98.8 8.2E-08 1.8E-12 96.2 14.7 114 380-499 99-212 (257)
72 PRK10866 outer membrane biogen 98.8 1.6E-07 3.4E-12 93.1 16.2 120 380-502 31-174 (243)
73 PLN02789 farnesyltranstransfer 98.8 1.6E-07 3.4E-12 97.0 15.4 113 380-498 70-185 (320)
74 PF14559 TPR_19: Tetratricopep 98.8 2.2E-08 4.7E-13 78.2 7.0 68 431-498 1-68 (68)
75 PF13432 TPR_16: Tetratricopep 98.8 2.6E-08 5.7E-13 77.5 7.4 65 385-455 1-65 (65)
76 PF13424 TPR_12: Tetratricopep 98.8 5.5E-08 1.2E-12 78.2 9.4 72 380-451 4-76 (78)
77 COG1729 Uncharacterized protei 98.7 2.7E-07 5.8E-12 93.1 14.9 116 382-500 142-260 (262)
78 PF09976 TPR_21: Tetratricopep 98.7 2.2E-07 4.7E-12 83.9 12.0 98 381-482 48-145 (145)
79 cd00189 TPR Tetratricopeptide 98.7 2E-07 4.4E-12 70.8 10.0 76 423-498 2-77 (100)
80 KOG1155 Anaphase-promoting com 98.7 1.4E-07 3E-12 100.9 12.1 115 382-502 331-445 (559)
81 PF12688 TPR_5: Tetratrico pep 98.7 4E-07 8.6E-12 81.9 13.1 99 382-483 2-103 (120)
82 KOG4555 TPR repeat-containing 98.7 3.5E-07 7.6E-12 84.6 13.0 101 380-486 42-146 (175)
83 PLN02789 farnesyltranstransfer 98.6 5.4E-07 1.2E-11 93.0 15.1 108 387-500 43-153 (320)
84 KOG2003 TPR repeat-containing 98.6 7.8E-08 1.7E-12 102.6 8.9 116 380-501 489-604 (840)
85 PLN03088 SGT1, suppressor of 98.6 1E-07 2.3E-12 99.0 9.0 97 366-470 23-119 (356)
86 CHL00033 ycf3 photosystem I as 98.6 2.2E-07 4.8E-12 85.4 10.1 109 388-500 6-117 (168)
87 PF13424 TPR_12: Tetratricopep 98.6 9.3E-08 2E-12 76.8 6.6 68 418-485 2-76 (78)
88 PF13371 TPR_9: Tetratricopept 98.6 2.3E-07 5.1E-12 73.3 8.5 70 388-463 2-71 (73)
89 PF06552 TOM20_plant: Plant sp 98.6 4.1E-07 8.8E-12 87.4 11.5 98 397-500 7-125 (186)
90 COG4783 Putative Zn-dependent 98.6 4.7E-07 1E-11 97.2 13.2 114 381-500 306-419 (484)
91 PRK14574 hmsH outer membrane p 98.6 7.4E-07 1.6E-11 102.3 15.1 110 380-495 33-142 (822)
92 COG4783 Putative Zn-dependent 98.6 9.8E-07 2.1E-11 94.8 14.8 121 376-502 335-455 (484)
93 PF14559 TPR_19: Tetratricopep 98.6 1.8E-07 3.8E-12 73.0 6.8 68 391-464 1-68 (68)
94 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 2.8E-07 6E-12 98.8 9.5 70 376-451 70-142 (453)
95 PRK15363 pathogenicity island 98.5 7.6E-07 1.6E-11 83.8 11.1 84 418-501 32-115 (157)
96 cd05804 StaR_like StaR_like; a 98.5 1E-06 2.3E-11 88.4 12.3 101 380-486 113-217 (355)
97 KOG1130 Predicted G-alpha GTPa 98.5 9.3E-08 2E-12 101.2 4.8 111 380-490 194-310 (639)
98 PRK02603 photosystem I assembl 98.5 2.7E-06 5.7E-11 78.8 13.9 83 417-499 31-116 (172)
99 cd05804 StaR_like StaR_like; a 98.5 2.2E-06 4.8E-11 86.1 14.3 108 381-488 43-181 (355)
100 PF13429 TPR_15: Tetratricopep 98.5 6E-07 1.3E-11 88.5 9.9 116 381-500 110-225 (280)
101 KOG2076 RNA polymerase III tra 98.5 2.7E-06 5.9E-11 96.4 15.9 115 380-500 138-252 (895)
102 KOG0553 TPR repeat-containing 98.5 5.7E-07 1.2E-11 91.9 9.6 99 366-472 102-200 (304)
103 PRK14574 hmsH outer membrane p 98.5 1.4E-06 2.9E-11 100.1 13.8 113 380-499 101-213 (822)
104 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 1.7E-06 3.8E-11 92.8 13.5 68 417-484 71-141 (453)
105 TIGR02795 tol_pal_ybgF tol-pal 98.5 2.1E-06 4.6E-11 71.9 11.3 78 422-499 3-86 (119)
106 PRK10153 DNA-binding transcrip 98.5 3.1E-06 6.6E-11 92.7 15.5 111 379-490 337-488 (517)
107 KOG0624 dsRNA-activated protei 98.5 2.5E-06 5.4E-11 89.1 13.8 104 383-492 157-260 (504)
108 KOG0550 Molecular chaperone (D 98.4 4.3E-07 9.4E-12 96.1 7.7 123 380-502 202-334 (486)
109 KOG4162 Predicted calmodulin-b 98.4 1.2E-06 2.7E-11 97.9 11.7 105 380-490 683-789 (799)
110 COG2956 Predicted N-acetylgluc 98.4 2E-06 4.3E-11 89.1 12.1 121 381-502 141-262 (389)
111 KOG2002 TPR-containing nuclear 98.4 2E-06 4.3E-11 98.2 13.1 118 380-500 269-387 (1018)
112 COG5010 TadD Flp pilus assembl 98.4 3.6E-06 7.8E-11 84.6 12.4 109 385-499 70-178 (257)
113 KOG1840 Kinesin light chain [C 98.4 4E-06 8.7E-11 91.6 13.7 111 375-485 277-397 (508)
114 KOG2076 RNA polymerase III tra 98.4 3.2E-06 6.9E-11 95.9 12.8 115 364-486 158-272 (895)
115 PF14938 SNAP: Soluble NSF att 98.4 7.9E-06 1.7E-10 82.0 14.4 110 379-488 112-229 (282)
116 KOG1308 Hsp70-interacting prot 98.3 2.7E-07 5.9E-12 95.7 3.5 102 380-487 113-214 (377)
117 COG4785 NlpI Lipoprotein NlpI, 98.3 2.3E-06 5.1E-11 84.9 9.4 112 373-490 57-168 (297)
118 KOG0543 FKBP-type peptidyl-pro 98.3 4.5E-06 9.8E-11 88.2 11.4 101 380-486 256-357 (397)
119 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 4.9E-06 1.1E-10 88.5 11.5 106 366-481 189-294 (395)
120 TIGR00540 hemY_coli hemY prote 98.3 2E-05 4.3E-10 82.9 15.9 94 385-484 122-216 (409)
121 KOG1840 Kinesin light chain [C 98.3 7.7E-06 1.7E-10 89.5 12.5 106 380-485 240-355 (508)
122 KOG3060 Uncharacterized conser 98.3 1.6E-05 3.5E-10 80.2 13.6 111 380-496 85-195 (289)
123 KOG1125 TPR repeat-containing 98.2 1.1E-05 2.3E-10 88.4 12.0 98 384-487 288-385 (579)
124 PRK10747 putative protoheme IX 98.2 4.1E-05 9E-10 80.4 16.1 97 388-490 125-222 (398)
125 TIGR00540 hemY_coli hemY prote 98.2 2.1E-05 4.6E-10 82.7 13.7 114 380-500 262-381 (409)
126 PRK14720 transcript cleavage f 98.2 1.7E-05 3.8E-10 91.6 13.9 62 422-484 117-178 (906)
127 PF14938 SNAP: Soluble NSF att 98.2 9.6E-06 2.1E-10 81.4 10.4 106 380-486 34-146 (282)
128 KOG2002 TPR-containing nuclear 98.2 1.4E-05 3.1E-10 91.4 12.6 118 379-501 305-426 (1018)
129 PF09976 TPR_21: Tetratricopep 98.2 9.9E-05 2.1E-09 66.6 15.4 115 380-498 10-127 (145)
130 KOG1173 Anaphase-promoting com 98.1 1.3E-05 2.9E-10 87.5 11.2 111 385-501 384-501 (611)
131 KOG2003 TPR repeat-containing 98.1 4.1E-06 9E-11 89.8 7.0 113 385-503 458-572 (840)
132 PRK10747 putative protoheme IX 98.1 4.7E-05 1E-09 80.0 14.6 116 379-501 82-199 (398)
133 KOG1129 TPR repeat-containing 98.1 1E-05 2.2E-10 84.2 9.1 113 380-498 255-367 (478)
134 KOG3060 Uncharacterized conser 98.1 3.8E-05 8.2E-10 77.6 12.4 113 380-498 119-234 (289)
135 KOG4162 Predicted calmodulin-b 98.1 4E-05 8.6E-10 86.2 13.8 116 381-502 650-767 (799)
136 KOG0546 HSP90 co-chaperone CPR 98.1 3.4E-06 7.4E-11 88.0 4.8 122 380-501 221-355 (372)
137 KOG1128 Uncharacterized conser 98.1 1.1E-05 2.3E-10 90.3 8.7 96 387-488 491-586 (777)
138 COG3118 Thioredoxin domain-con 98.1 6.4E-05 1.4E-09 77.2 13.7 144 349-502 106-285 (304)
139 KOG1129 TPR repeat-containing 98.1 2.5E-05 5.3E-10 81.4 10.7 99 386-491 228-326 (478)
140 PRK11906 transcriptional regul 98.1 5.4E-05 1.2E-09 81.6 13.7 109 383-497 257-380 (458)
141 KOG1174 Anaphase-promoting com 98.0 2.8E-05 6.1E-10 82.9 11.0 121 380-501 367-517 (564)
142 PF13525 YfiO: Outer membrane 98.0 0.00012 2.6E-09 70.2 14.3 118 380-500 41-186 (203)
143 KOG2796 Uncharacterized conser 98.0 3E-05 6.6E-10 78.9 10.4 115 378-492 209-323 (366)
144 KOG1156 N-terminal acetyltrans 98.0 3.1E-05 6.8E-10 85.7 11.2 114 382-501 8-121 (700)
145 PRK10866 outer membrane biogen 98.0 0.00019 4.1E-09 71.4 15.7 118 380-500 68-220 (243)
146 PRK14720 transcript cleavage f 98.0 6E-05 1.3E-09 87.2 13.5 112 382-500 117-268 (906)
147 COG2956 Predicted N-acetylgluc 98.0 0.00011 2.4E-09 76.5 13.8 106 377-488 176-282 (389)
148 KOG1174 Anaphase-promoting com 98.0 4E-05 8.7E-10 81.7 10.9 119 380-498 231-377 (564)
149 PRK11906 transcriptional regul 98.0 0.00011 2.4E-09 79.3 14.4 105 380-490 294-407 (458)
150 COG4105 ComL DNA uptake lipopr 98.0 0.0002 4.4E-09 72.2 15.0 118 380-500 33-164 (254)
151 PRK10803 tol-pal system protei 97.9 7E-05 1.5E-09 75.6 10.8 73 421-493 142-218 (263)
152 PF12968 DUF3856: Domain of Un 97.9 0.0002 4.4E-09 65.4 12.0 100 385-484 13-129 (144)
153 KOG1310 WD40 repeat protein [G 97.9 3.6E-05 7.9E-10 83.9 8.3 106 380-491 373-481 (758)
154 PF12895 Apc3: Anaphase-promot 97.9 2.2E-05 4.8E-10 64.4 5.2 67 434-501 2-70 (84)
155 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00024 5.1E-09 75.8 13.8 104 390-502 178-281 (395)
156 PF04733 Coatomer_E: Coatomer 97.8 0.00013 2.9E-09 74.4 11.0 110 380-497 130-243 (290)
157 COG4235 Cytochrome c biogenesi 97.8 0.00028 6.1E-09 72.3 12.9 82 417-498 152-236 (287)
158 PF00515 TPR_1: Tetratricopept 97.8 3.6E-05 7.7E-10 53.0 4.5 32 456-487 2-33 (34)
159 PF03704 BTAD: Bacterial trans 97.8 0.00056 1.2E-08 61.2 13.5 103 382-484 7-125 (146)
160 KOG3785 Uncharacterized conser 97.8 6.3E-05 1.4E-09 79.1 8.2 134 360-499 36-195 (557)
161 COG0457 NrfG FOG: TPR repeat [ 97.7 0.0013 2.9E-08 55.5 14.1 102 380-487 94-199 (291)
162 PF12688 TPR_5: Tetratrico pep 97.7 0.00038 8.1E-09 62.8 11.1 72 422-493 2-79 (120)
163 PF07719 TPR_2: Tetratricopept 97.7 7.5E-05 1.6E-09 50.8 5.2 33 456-488 2-34 (34)
164 PF04733 Coatomer_E: Coatomer 97.7 0.00016 3.4E-09 73.9 9.6 103 387-495 171-276 (290)
165 KOG4234 TPR repeat-containing 97.7 0.00022 4.8E-09 70.4 9.9 81 375-461 128-208 (271)
166 KOG1130 Predicted G-alpha GTPa 97.7 0.00016 3.4E-09 77.3 9.5 105 381-485 235-345 (639)
167 PF13428 TPR_14: Tetratricopep 97.7 8.1E-05 1.8E-09 54.8 5.3 40 457-496 3-42 (44)
168 PF00515 TPR_1: Tetratricopept 97.7 6.3E-05 1.4E-09 51.7 4.3 34 421-454 1-34 (34)
169 KOG1156 N-terminal acetyltrans 97.7 0.00034 7.5E-09 77.8 12.0 100 380-485 74-173 (700)
170 KOG1127 TPR repeat-containing 97.6 8.7E-05 1.9E-09 85.5 7.0 113 380-498 561-673 (1238)
171 PF15015 NYD-SP12_N: Spermatog 97.6 0.00031 6.7E-09 75.2 10.5 106 379-484 174-291 (569)
172 PF12569 NARP1: NMDA receptor- 97.6 0.00061 1.3E-08 75.0 13.1 97 381-483 194-290 (517)
173 PF13428 TPR_14: Tetratricopep 97.6 0.00016 3.5E-09 53.2 5.6 43 422-464 2-44 (44)
174 KOG0495 HAT repeat protein [RN 97.6 0.00048 1E-08 77.0 11.5 119 383-501 586-731 (913)
175 KOG1128 Uncharacterized conser 97.6 0.00018 3.9E-09 80.8 8.3 100 380-485 518-617 (777)
176 COG0457 NrfG FOG: TPR repeat [ 97.5 0.0029 6.3E-08 53.5 13.4 95 390-487 139-234 (291)
177 KOG2376 Signal recognition par 97.5 0.00096 2.1E-08 73.8 12.9 101 380-490 45-145 (652)
178 KOG4151 Myosin assembly protei 97.5 0.00021 4.5E-09 80.8 8.0 120 380-501 52-173 (748)
179 PF07719 TPR_2: Tetratricopept 97.5 0.00023 4.9E-09 48.4 5.0 34 421-454 1-34 (34)
180 PF12569 NARP1: NMDA receptor- 97.5 0.00074 1.6E-08 74.3 11.5 72 421-492 194-265 (517)
181 COG4700 Uncharacterized protei 97.5 0.0016 3.5E-08 63.9 12.3 104 380-488 88-193 (251)
182 PF13431 TPR_17: Tetratricopep 97.5 0.00013 2.9E-09 51.6 3.6 33 444-476 2-34 (34)
183 PRK10941 hypothetical protein; 97.4 0.0013 2.9E-08 66.9 11.7 82 420-501 180-261 (269)
184 PRK04841 transcriptional regul 97.4 0.0016 3.4E-08 74.2 13.5 105 382-486 492-604 (903)
185 PRK15331 chaperone protein Sic 97.4 0.00083 1.8E-08 64.0 9.4 84 417-500 33-116 (165)
186 KOG1941 Acetylcholine receptor 97.4 0.00042 9.2E-09 73.2 7.7 106 381-486 122-237 (518)
187 PF13512 TPR_18: Tetratricopep 97.4 0.001 2.2E-08 62.0 9.3 71 421-491 10-83 (142)
188 KOG2376 Signal recognition par 97.4 0.0023 4.9E-08 70.9 13.3 107 383-489 112-258 (652)
189 KOG0495 HAT repeat protein [RN 97.4 0.002 4.3E-08 72.2 12.8 113 383-501 653-765 (913)
190 PF09986 DUF2225: Uncharacteri 97.3 0.004 8.6E-08 61.3 13.2 109 390-498 86-210 (214)
191 COG2976 Uncharacterized protei 97.3 0.0035 7.6E-08 61.5 12.6 103 383-490 91-194 (207)
192 PF10300 DUF3808: Protein of u 97.3 0.0018 4E-08 70.2 11.6 104 380-486 266-378 (468)
193 PF14853 Fis1_TPR_C: Fis1 C-te 97.3 0.0011 2.3E-08 52.0 7.0 46 456-501 2-47 (53)
194 KOG3785 Uncharacterized conser 97.3 0.0014 2.9E-08 69.4 9.8 87 389-480 30-116 (557)
195 KOG4555 TPR repeat-containing 97.3 0.0015 3.2E-08 61.1 9.0 62 427-488 49-110 (175)
196 KOG1127 TPR repeat-containing 97.3 0.00084 1.8E-08 77.7 8.8 128 369-498 482-639 (1238)
197 KOG4648 Uncharacterized conser 97.2 0.00043 9.2E-09 72.8 5.8 65 424-488 100-164 (536)
198 KOG4814 Uncharacterized conser 97.2 0.0021 4.6E-08 71.7 11.0 104 382-485 355-458 (872)
199 PRK04841 transcriptional regul 97.2 0.0057 1.2E-07 69.7 14.5 106 381-486 531-643 (903)
200 COG4785 NlpI Lipoprotein NlpI, 97.2 0.002 4.3E-08 64.5 9.1 77 417-493 61-137 (297)
201 PRK10153 DNA-binding transcrip 97.1 0.0019 4E-08 71.2 9.4 73 381-460 420-492 (517)
202 COG1729 Uncharacterized protei 97.1 0.0039 8.5E-08 63.4 10.7 77 424-500 144-226 (262)
203 KOG4507 Uncharacterized conser 97.1 0.00096 2.1E-08 73.9 6.7 104 390-498 616-719 (886)
204 PF13181 TPR_8: Tetratricopept 97.1 0.00096 2.1E-08 45.6 4.3 31 456-486 2-32 (34)
205 PF13181 TPR_8: Tetratricopept 97.0 0.0011 2.4E-08 45.2 4.2 32 422-453 2-33 (34)
206 KOG4340 Uncharacterized conser 97.0 0.0013 2.8E-08 68.3 6.2 96 379-480 142-266 (459)
207 KOG2471 TPR repeat-containing 97.0 0.002 4.3E-08 70.3 7.8 123 379-502 238-382 (696)
208 PLN03081 pentatricopeptide (PP 96.9 0.006 1.3E-07 68.4 11.7 64 421-484 494-557 (697)
209 KOG4642 Chaperone-dependent E3 96.9 0.0013 2.8E-08 66.3 5.4 76 424-499 13-88 (284)
210 KOG3081 Vesicle coat complex C 96.9 0.011 2.3E-07 60.6 11.8 79 422-500 170-252 (299)
211 PF13431 TPR_17: Tetratricopep 96.9 0.00092 2E-08 47.3 2.9 34 403-442 1-34 (34)
212 KOG0551 Hsp90 co-chaperone CNS 96.8 0.0052 1.1E-07 64.5 8.8 75 418-492 78-156 (390)
213 PF13174 TPR_6: Tetratricopept 96.8 0.0025 5.3E-08 42.8 4.3 33 456-488 1-33 (33)
214 COG3071 HemY Uncharacterized e 96.7 0.044 9.5E-07 58.6 14.9 113 380-498 83-196 (400)
215 PLN03218 maturation of RBCL 1; 96.7 0.019 4E-07 68.4 13.6 62 422-483 685-747 (1060)
216 PF10602 RPN7: 26S proteasome 96.7 0.019 4E-07 54.8 11.1 104 379-485 34-143 (177)
217 PF14561 TPR_20: Tetratricopep 96.7 0.0073 1.6E-07 51.8 7.5 61 441-501 8-70 (90)
218 KOG1586 Protein required for f 96.6 0.029 6.2E-07 56.8 12.4 112 381-492 73-191 (288)
219 KOG1941 Acetylcholine receptor 96.6 0.01 2.2E-07 63.1 9.3 105 380-484 161-275 (518)
220 PF08631 SPO22: Meiosis protei 96.6 0.072 1.6E-06 53.7 15.1 110 377-486 31-152 (278)
221 PLN03218 maturation of RBCL 1; 96.6 0.025 5.4E-07 67.4 13.4 62 423-484 581-643 (1060)
222 smart00028 TPR Tetratricopepti 96.5 0.0037 8.1E-08 38.9 3.7 30 457-486 3-32 (34)
223 KOG4340 Uncharacterized conser 96.5 0.019 4.2E-07 59.9 10.7 86 391-482 20-105 (459)
224 PF05843 Suf: Suppressor of fo 96.5 0.015 3.3E-07 58.7 9.9 93 389-487 9-102 (280)
225 KOG3364 Membrane protein invol 96.5 0.035 7.7E-07 51.9 11.0 82 421-502 32-118 (149)
226 KOG1585 Protein required for f 96.4 0.078 1.7E-06 54.1 13.9 107 382-488 32-143 (308)
227 PF03704 BTAD: Bacterial trans 96.4 0.027 5.8E-07 50.4 9.7 64 380-449 61-124 (146)
228 KOG3824 Huntingtin interacting 96.4 0.011 2.3E-07 61.9 7.7 78 380-463 115-192 (472)
229 COG4105 ComL DNA uptake lipopr 96.3 0.024 5.1E-07 57.6 9.9 73 420-492 33-108 (254)
230 KOG1586 Protein required for f 96.3 0.066 1.4E-06 54.3 12.5 106 381-487 34-146 (288)
231 COG3071 HemY Uncharacterized e 96.3 0.072 1.6E-06 56.9 13.4 99 381-488 263-361 (400)
232 smart00028 TPR Tetratricopepti 96.3 0.0069 1.5E-07 37.7 3.8 32 422-453 2-33 (34)
233 PF14853 Fis1_TPR_C: Fis1 C-te 96.2 0.02 4.3E-07 44.9 6.9 44 422-465 2-45 (53)
234 PLN03077 Protein ECB2; Provisi 96.2 0.064 1.4E-06 61.7 14.0 107 383-495 591-697 (857)
235 PLN03081 pentatricopeptide (PP 96.2 0.016 3.4E-07 65.1 8.8 66 423-490 464-529 (697)
236 COG4976 Predicted methyltransf 96.2 0.0063 1.4E-07 61.3 4.8 58 431-488 5-62 (287)
237 PF12862 Apc5: Anaphase-promot 96.2 0.059 1.3E-06 45.9 10.1 62 390-451 7-71 (94)
238 PRK10941 hypothetical protein; 96.1 0.054 1.2E-06 55.3 11.4 82 380-467 180-261 (269)
239 PLN03077 Protein ECB2; Provisi 96.1 0.035 7.6E-07 63.8 11.0 104 380-489 553-658 (857)
240 PF13174 TPR_6: Tetratricopept 96.1 0.011 2.3E-07 39.6 4.1 32 423-454 2-33 (33)
241 KOG1585 Protein required for f 96.0 0.075 1.6E-06 54.2 11.7 105 381-485 110-220 (308)
242 PF04781 DUF627: Protein of un 96.0 0.054 1.2E-06 48.8 9.5 96 387-485 2-108 (111)
243 PF02259 FAT: FAT domain; Int 96.0 0.11 2.5E-06 52.1 12.7 108 380-487 183-341 (352)
244 PF13176 TPR_7: Tetratricopept 95.9 0.018 4E-07 40.7 5.0 28 384-411 2-29 (36)
245 PF04184 ST7: ST7 protein; In 95.9 0.12 2.7E-06 56.8 13.2 89 396-484 215-324 (539)
246 PF09613 HrpB1_HrpK: Bacterial 95.8 0.44 9.4E-06 45.5 15.2 115 379-501 8-122 (160)
247 PF04184 ST7: ST7 protein; In 95.8 0.084 1.8E-06 58.1 11.6 108 382-493 260-384 (539)
248 PF05843 Suf: Suppressor of fo 95.8 0.2 4.3E-06 50.7 13.6 110 380-495 34-147 (280)
249 KOG2053 Mitochondrial inherita 95.7 0.095 2.1E-06 60.7 11.9 103 383-492 45-147 (932)
250 PF06552 TOM20_plant: Plant sp 95.7 0.046 1E-06 53.1 8.2 63 437-499 7-79 (186)
251 KOG3081 Vesicle coat complex C 95.6 0.22 4.9E-06 51.2 13.3 91 396-492 188-279 (299)
252 PF02259 FAT: FAT domain; Int 95.6 0.27 5.9E-06 49.3 13.9 120 378-499 143-302 (352)
253 KOG3824 Huntingtin interacting 95.6 0.11 2.4E-06 54.6 11.1 75 423-497 118-192 (472)
254 PF13176 TPR_7: Tetratricopept 95.6 0.021 4.6E-07 40.3 4.2 25 458-482 2-26 (36)
255 KOG0376 Serine-threonine phosp 95.6 0.012 2.7E-07 63.9 4.4 88 381-474 38-127 (476)
256 PF14561 TPR_20: Tetratricopep 95.5 0.15 3.2E-06 43.7 10.0 49 400-454 7-55 (90)
257 PF10300 DUF3808: Protein of u 95.4 0.13 2.7E-06 56.1 11.5 88 394-487 246-337 (468)
258 KOG1070 rRNA processing protei 95.3 0.26 5.5E-06 59.7 13.9 78 421-498 1530-1609(1710)
259 COG0790 FOG: TPR repeat, SEL1 95.2 0.47 1E-05 47.1 13.8 108 380-496 108-230 (292)
260 COG2912 Uncharacterized conser 95.2 0.16 3.4E-06 52.1 10.4 81 420-500 180-260 (269)
261 KOG2471 TPR repeat-containing 95.1 0.027 5.8E-07 61.9 4.9 86 382-467 284-381 (696)
262 PF09613 HrpB1_HrpK: Bacterial 95.1 0.29 6.3E-06 46.7 11.3 82 421-502 10-91 (160)
263 KOG2053 Mitochondrial inherita 95.1 0.21 4.6E-06 58.0 12.1 91 391-487 19-109 (932)
264 COG4700 Uncharacterized protei 95.1 0.19 4.1E-06 49.8 10.2 99 380-483 123-221 (251)
265 KOG1550 Extracellular protein 95.0 0.26 5.7E-06 54.7 12.6 103 384-498 291-405 (552)
266 KOG1070 rRNA processing protei 94.8 0.33 7.2E-06 58.8 13.1 108 385-498 1534-1643(1710)
267 PF10345 Cohesin_load: Cohesin 94.8 0.53 1.1E-05 52.7 14.2 121 376-497 54-183 (608)
268 PF11817 Foie-gras_1: Foie gra 94.8 0.32 7E-06 48.4 11.3 87 396-482 153-245 (247)
269 KOG3364 Membrane protein invol 94.7 0.28 6E-06 46.1 9.9 85 380-468 31-118 (149)
270 PF13374 TPR_10: Tetratricopep 94.6 0.072 1.5E-06 37.1 4.6 29 422-450 3-31 (42)
271 PF04910 Tcf25: Transcriptiona 94.6 0.58 1.3E-05 49.6 13.2 74 380-453 39-135 (360)
272 KOG2396 HAT (Half-A-TPR) repea 94.6 0.35 7.6E-06 53.4 11.7 93 401-499 91-184 (568)
273 KOG3617 WD40 and TPR repeat-co 94.5 0.19 4E-06 58.3 9.8 104 381-484 858-996 (1416)
274 KOG0545 Aryl-hydrocarbon recep 94.5 0.24 5.2E-06 50.8 9.6 79 380-464 229-307 (329)
275 KOG2796 Uncharacterized conser 94.4 0.3 6.5E-06 50.6 10.2 110 384-498 180-295 (366)
276 PF09986 DUF2225: Uncharacteri 94.4 0.36 7.8E-06 47.6 10.4 87 376-462 113-207 (214)
277 KOG2610 Uncharacterized conser 94.3 0.23 5.1E-06 52.8 9.3 90 387-479 143-233 (491)
278 PF08631 SPO22: Meiosis protei 94.1 0.82 1.8E-05 46.2 12.8 102 391-492 3-124 (278)
279 KOG1550 Extracellular protein 94.0 0.59 1.3E-05 52.0 12.3 116 380-500 243-371 (552)
280 PF12862 Apc5: Anaphase-promot 93.9 0.25 5.4E-06 42.0 7.3 59 430-488 7-74 (94)
281 PF13374 TPR_10: Tetratricopep 93.8 0.15 3.3E-06 35.4 4.9 33 381-413 2-34 (42)
282 PF07079 DUF1347: Protein of u 93.8 1.6 3.5E-05 48.0 14.6 72 427-502 468-543 (549)
283 PF10602 RPN7: 26S proteasome 93.7 1.9 4.2E-05 41.1 13.7 70 417-486 32-104 (177)
284 COG3898 Uncharacterized membra 93.4 1.1 2.5E-05 48.5 12.6 98 389-487 196-295 (531)
285 PF10579 Rapsyn_N: Rapsyn N-te 93.2 0.6 1.3E-05 39.9 8.2 67 381-450 6-72 (80)
286 KOG4814 Uncharacterized conser 93.2 0.7 1.5E-05 52.5 11.1 75 422-496 355-435 (872)
287 COG4976 Predicted methyltransf 93.2 0.12 2.7E-06 52.3 4.9 60 390-455 4-63 (287)
288 PRK13184 pknD serine/threonine 93.0 0.42 9.1E-06 56.5 9.5 108 385-496 479-593 (932)
289 KOG1915 Cell cycle control pro 93.0 1.1 2.4E-05 49.6 12.0 103 381-489 73-175 (677)
290 COG3629 DnrI DNA-binding trans 92.9 2 4.4E-05 44.4 13.3 66 419-484 151-216 (280)
291 KOG1308 Hsp70-interacting prot 92.9 0.084 1.8E-06 55.8 3.3 68 380-453 147-214 (377)
292 PF13281 DUF4071: Domain of un 92.8 1.9 4E-05 46.3 13.3 113 389-501 107-229 (374)
293 COG0790 FOG: TPR repeat, SEL1 92.7 3.6 7.8E-05 40.9 14.5 94 384-488 151-270 (292)
294 TIGR02561 HrpB1_HrpK type III 92.7 1.1 2.3E-05 42.7 10.0 87 380-472 9-95 (153)
295 KOG1915 Cell cycle control pro 92.6 0.74 1.6E-05 50.9 10.0 97 381-484 404-500 (677)
296 KOG2300 Uncharacterized conser 92.5 2.3 5E-05 47.2 13.5 99 380-485 366-475 (629)
297 KOG2610 Uncharacterized conser 92.3 1.3 2.8E-05 47.3 11.0 108 388-501 110-221 (491)
298 KOG0686 COP9 signalosome, subu 92.1 0.83 1.8E-05 49.5 9.5 99 381-482 150-256 (466)
299 PF13281 DUF4071: Domain of un 91.9 1.5 3.3E-05 47.0 11.3 107 380-488 140-259 (374)
300 KOG2047 mRNA splicing factor [ 91.9 2.2 4.7E-05 48.8 12.7 112 379-492 385-514 (835)
301 PHA02537 M terminase endonucle 91.4 1.5 3.3E-05 44.1 10.0 109 391-502 93-224 (230)
302 COG3914 Spy Predicted O-linked 91.4 2.7 5.7E-05 47.5 12.7 106 387-498 73-185 (620)
303 KOG4507 Uncharacterized conser 91.2 0.47 1E-05 53.5 6.7 103 384-490 215-318 (886)
304 PF10516 SHNi-TPR: SHNi-TPR; 91.2 0.29 6.3E-06 36.0 3.5 30 422-451 2-31 (38)
305 KOG2581 26S proteasome regulat 91.0 2.8 6.2E-05 45.6 12.1 106 383-488 171-280 (493)
306 TIGR02561 HrpB1_HrpK type III 91.0 7.8 0.00017 36.9 13.7 79 423-501 12-90 (153)
307 KOG1839 Uncharacterized protei 90.2 0.82 1.8E-05 55.2 8.0 107 379-485 971-1087(1236)
308 PF11817 Foie-gras_1: Foie gra 90.2 2.1 4.5E-05 42.7 9.8 68 381-448 178-245 (247)
309 PF04910 Tcf25: Transcriptiona 90.2 4.1 8.9E-05 43.2 12.5 77 417-493 36-142 (360)
310 KOG2561 Adaptor protein NUB1, 89.9 1.8 3.8E-05 47.6 9.5 105 380-484 162-296 (568)
311 COG3898 Uncharacterized membra 89.9 4.2 9.1E-05 44.4 12.2 96 380-483 119-216 (531)
312 COG2976 Uncharacterized protei 89.9 5.6 0.00012 39.5 12.1 98 385-482 35-153 (207)
313 PF08424 NRDE-2: NRDE-2, neces 89.8 5.2 0.00011 41.5 12.7 78 417-494 15-104 (321)
314 COG2912 Uncharacterized conser 89.6 1.9 4.1E-05 44.4 9.0 78 383-466 183-260 (269)
315 PF10952 DUF2753: Protein of u 89.2 5.5 0.00012 37.1 10.8 109 383-498 3-125 (140)
316 PF12968 DUF3856: Domain of Un 88.9 3.8 8.3E-05 38.1 9.5 71 380-450 54-129 (144)
317 KOG2047 mRNA splicing factor [ 88.8 2.6 5.6E-05 48.2 10.0 107 379-486 423-542 (835)
318 cd02682 MIT_AAA_Arch MIT: doma 88.5 2.2 4.8E-05 36.0 7.2 34 380-413 5-38 (75)
319 COG5191 Uncharacterized conser 88.3 0.91 2E-05 48.0 5.8 82 418-499 104-186 (435)
320 PF10373 EST1_DNA_bind: Est1 D 88.1 3.9 8.4E-05 40.0 9.9 62 400-467 1-62 (278)
321 KOG0530 Protein farnesyltransf 87.7 5.3 0.00011 41.6 10.7 96 390-491 52-149 (318)
322 PF10373 EST1_DNA_bind: Est1 D 87.7 1.7 3.8E-05 42.4 7.2 62 440-501 1-62 (278)
323 KOG2041 WD40 repeat protein [G 87.5 2 4.3E-05 49.6 8.2 79 383-479 798-876 (1189)
324 TIGR03504 FimV_Cterm FimV C-te 87.4 2 4.3E-05 32.6 5.7 26 458-483 2-27 (44)
325 COG2909 MalT ATP-dependent tra 87.4 10 0.00022 44.8 13.9 107 381-487 415-529 (894)
326 KOG1463 26S proteasome regulat 87.3 1.9 4E-05 46.1 7.4 100 386-485 133-239 (411)
327 KOG2300 Uncharacterized conser 87.3 3.3 7.2E-05 46.1 9.5 95 392-486 286-398 (629)
328 KOG4014 Uncharacterized conser 87.0 3.3 7.1E-05 41.2 8.4 92 392-485 38-142 (248)
329 COG4455 ImpE Protein of avirul 86.7 3.8 8.2E-05 41.7 8.8 61 388-454 8-68 (273)
330 PF08626 TRAPPC9-Trs120: Trans 86.7 5.8 0.00013 48.3 12.2 108 380-487 241-437 (1185)
331 KOG2114 Vacuolar assembly/sort 86.6 3.8 8.2E-05 48.0 9.9 105 376-480 363-515 (933)
332 PF10516 SHNi-TPR: SHNi-TPR; 86.6 1 2.2E-05 33.1 3.7 30 456-485 2-31 (38)
333 COG5159 RPN6 26S proteasome re 86.4 4.7 0.0001 42.5 9.6 100 386-485 130-236 (421)
334 PF11207 DUF2989: Protein of u 86.4 2.2 4.7E-05 42.3 6.9 74 397-476 122-199 (203)
335 PF07079 DUF1347: Protein of u 86.2 4 8.7E-05 45.1 9.4 61 380-447 461-521 (549)
336 KOG3617 WD40 and TPR repeat-co 86.1 4.3 9.4E-05 47.8 9.9 79 404-483 842-940 (1416)
337 PF10345 Cohesin_load: Cohesin 86.1 15 0.00033 41.3 14.3 99 381-479 301-428 (608)
338 cd02681 MIT_calpain7_1 MIT: do 86.1 4 8.7E-05 34.4 7.4 33 380-412 5-37 (76)
339 PF09670 Cas_Cas02710: CRISPR- 86.1 10 0.00022 40.5 12.3 66 380-449 130-197 (379)
340 PF06957 COPI_C: Coatomer (COP 86.0 7.1 0.00015 42.7 11.2 111 383-493 206-338 (422)
341 PF07720 TPR_3: Tetratricopept 84.9 2.7 5.8E-05 30.5 5.1 32 456-487 2-35 (36)
342 COG4649 Uncharacterized protei 84.9 19 0.0004 35.8 12.3 99 383-483 96-195 (221)
343 PF12739 TRAPPC-Trs85: ER-Golg 84.8 10 0.00022 40.7 11.7 102 383-484 210-329 (414)
344 PF04781 DUF627: Protein of un 84.7 4.5 9.9E-05 36.6 7.5 64 427-490 2-79 (111)
345 TIGR02710 CRISPR-associated pr 84.2 12 0.00026 40.4 11.8 64 381-445 130-195 (380)
346 PF11846 DUF3366: Domain of un 83.2 5.4 0.00012 37.9 7.9 53 437-490 127-179 (193)
347 PF10255 Paf67: RNA polymerase 83.0 1.7 3.7E-05 47.0 5.0 59 425-483 126-192 (404)
348 PF10255 Paf67: RNA polymerase 82.6 3.9 8.5E-05 44.4 7.4 63 386-449 127-192 (404)
349 COG3947 Response regulator con 82.4 5 0.00011 42.3 7.8 62 421-482 279-340 (361)
350 PRK13184 pknD serine/threonine 82.3 8.1 0.00018 46.1 10.5 95 403-499 534-638 (932)
351 PF07721 TPR_4: Tetratricopept 82.3 1.6 3.4E-05 28.9 2.8 23 457-479 3-25 (26)
352 cd02683 MIT_1 MIT: domain cont 81.9 9.3 0.0002 32.0 7.9 33 380-412 5-37 (77)
353 PF11207 DUF2989: Protein of u 81.8 9.2 0.0002 38.0 9.1 69 431-501 117-190 (203)
354 KOG0292 Vesicle coat complex C 81.8 15 0.00034 43.5 12.0 116 381-496 991-1125(1202)
355 KOG1310 WD40 repeat protein [G 81.8 2.7 5.8E-05 47.2 5.9 66 436-501 389-457 (758)
356 KOG1463 26S proteasome regulat 81.5 10 0.00022 40.7 9.8 112 385-499 213-328 (411)
357 COG3118 Thioredoxin domain-con 81.4 23 0.00049 37.3 12.1 89 381-469 168-286 (304)
358 COG3914 Spy Predicted O-linked 81.1 12 0.00027 42.4 10.7 94 400-497 50-144 (620)
359 PF04212 MIT: MIT (microtubule 80.9 12 0.00025 30.1 7.9 33 380-412 4-36 (69)
360 COG4941 Predicted RNA polymera 80.4 8.2 0.00018 41.4 8.6 80 422-501 330-411 (415)
361 PF14863 Alkyl_sulf_dimr: Alky 80.1 6.6 0.00014 36.7 7.1 53 421-473 70-122 (141)
362 PF10579 Rapsyn_N: Rapsyn N-te 79.6 14 0.0003 31.7 8.3 63 422-484 7-72 (80)
363 PF04053 Coatomer_WDAD: Coatom 79.5 16 0.00034 40.1 10.8 19 463-481 410-428 (443)
364 KOG3783 Uncharacterized conser 79.2 15 0.00032 41.4 10.5 67 422-488 450-524 (546)
365 COG2909 MalT ATP-dependent tra 78.9 16 0.00035 43.2 11.1 90 380-470 457-552 (894)
366 KOG0546 HSP90 co-chaperone CPR 78.7 1.2 2.6E-05 47.5 2.0 84 381-470 275-358 (372)
367 KOG0687 26S proteasome regulat 78.5 25 0.00054 37.7 11.4 104 380-483 103-209 (393)
368 COG3629 DnrI DNA-binding trans 78.4 9.6 0.00021 39.5 8.3 65 380-450 152-216 (280)
369 PF10858 DUF2659: Protein of u 78.2 35 0.00075 33.6 11.4 96 387-486 99-202 (220)
370 PRK15180 Vi polysaccharide bio 78.2 3.3 7.1E-05 46.2 5.1 99 383-487 325-423 (831)
371 KOG3616 Selective LIM binding 78.0 14 0.0003 43.3 10.0 95 386-481 666-791 (1636)
372 PF08311 Mad3_BUB1_I: Mad3/BUB 77.7 30 0.00065 31.3 10.4 82 395-482 40-126 (126)
373 PRK15180 Vi polysaccharide bio 77.4 20 0.00042 40.4 10.6 99 387-491 295-393 (831)
374 cd02680 MIT_calpain7_2 MIT: do 77.4 10 0.00023 31.9 6.8 34 380-413 5-38 (75)
375 PF14863 Alkyl_sulf_dimr: Alky 76.6 7.8 0.00017 36.2 6.5 46 382-433 71-116 (141)
376 COG4455 ImpE Protein of avirul 76.3 59 0.0013 33.4 12.9 59 430-488 10-68 (273)
377 smart00745 MIT Microtubule Int 76.3 17 0.00036 29.6 7.7 34 380-413 7-40 (77)
378 PF07721 TPR_4: Tetratricopept 76.2 3.2 6.9E-05 27.4 2.8 23 423-445 3-25 (26)
379 cd02682 MIT_AAA_Arch MIT: doma 75.8 12 0.00026 31.6 6.8 34 437-470 29-62 (75)
380 PF07720 TPR_3: Tetratricopept 75.5 8 0.00017 28.0 4.9 28 425-452 5-34 (36)
381 cd02678 MIT_VPS4 MIT: domain c 75.5 17 0.00036 30.0 7.5 34 380-413 5-38 (75)
382 KOG1839 Uncharacterized protei 75.3 6.6 0.00014 47.8 6.9 106 379-485 930-1045(1236)
383 cd02656 MIT MIT: domain contai 75.1 20 0.00042 29.2 7.8 33 381-413 6-38 (75)
384 KOG1258 mRNA processing protei 75.1 70 0.0015 36.5 14.4 110 381-496 297-407 (577)
385 PF05053 Menin: Menin; InterP 74.7 37 0.00081 38.6 12.0 49 452-500 315-369 (618)
386 KOG2581 26S proteasome regulat 74.4 27 0.00059 38.4 10.6 72 380-453 208-279 (493)
387 KOG3807 Predicted membrane pro 74.0 48 0.001 35.9 12.1 27 460-486 280-306 (556)
388 KOG3783 Uncharacterized conser 73.9 32 0.00069 38.8 11.3 86 376-461 444-534 (546)
389 PF00244 14-3-3: 14-3-3 protei 73.7 14 0.0003 37.0 7.9 53 397-449 142-197 (236)
390 KOG2041 WD40 repeat protein [G 73.5 12 0.00026 43.6 8.0 69 417-497 792-860 (1189)
391 KOG4014 Uncharacterized conser 73.1 16 0.00035 36.5 7.8 95 380-484 104-233 (248)
392 PF04348 LppC: LppC putative l 73.0 1.1 2.5E-05 49.8 0.0 106 378-486 21-129 (536)
393 PF04053 Coatomer_WDAD: Coatom 72.7 12 0.00025 41.1 7.6 46 432-482 329-374 (443)
394 PF08424 NRDE-2: NRDE-2, neces 72.4 48 0.001 34.4 11.7 82 397-484 47-131 (321)
395 PF04190 DUF410: Protein of un 72.2 47 0.001 33.7 11.4 98 381-479 10-114 (260)
396 KOG4459 Membrane-associated pr 72.0 19 0.00041 39.8 8.9 117 381-502 31-180 (471)
397 KOG0985 Vesicle coat protein c 71.1 25 0.00054 42.7 10.0 103 382-499 1195-1323(1666)
398 KOG0529 Protein geranylgeranyl 70.4 70 0.0015 35.1 12.6 81 417-497 59-153 (421)
399 KOG0530 Protein farnesyltransf 69.3 16 0.00035 38.2 7.2 80 421-500 147-232 (318)
400 PRK12798 chemotaxis protein; R 69.2 70 0.0015 35.2 12.3 112 380-496 111-226 (421)
401 KOG2422 Uncharacterized conser 68.8 55 0.0012 37.5 11.7 104 395-498 252-386 (665)
402 PF13226 DUF4034: Domain of un 68.6 69 0.0015 33.3 11.7 114 387-501 6-145 (277)
403 KOG1497 COP9 signalosome, subu 68.6 42 0.00092 36.0 10.2 104 380-484 102-213 (399)
404 KOG2908 26S proteasome regulat 67.9 67 0.0015 34.6 11.6 94 392-485 86-187 (380)
405 PRK09687 putative lyase; Provi 66.2 63 0.0014 33.1 10.9 90 397-500 190-279 (280)
406 smart00745 MIT Microtubule Int 65.8 9.7 0.00021 31.0 4.1 22 428-449 15-36 (77)
407 KOG0529 Protein geranylgeranyl 65.6 73 0.0016 35.0 11.6 95 392-492 86-186 (421)
408 cd02677 MIT_SNX15 MIT: domain 65.0 70 0.0015 26.7 9.1 33 380-412 5-37 (75)
409 PF04190 DUF410: Protein of un 64.9 96 0.0021 31.4 11.8 84 401-484 70-170 (260)
410 COG5187 RPN7 26S proteasome re 64.6 48 0.001 35.3 9.6 87 398-484 92-184 (412)
411 COG5187 RPN7 26S proteasome re 64.3 73 0.0016 34.0 10.9 105 379-483 113-220 (412)
412 COG3014 Uncharacterized protei 64.1 37 0.00079 36.8 8.8 82 400-486 40-156 (449)
413 PF15015 NYD-SP12_N: Spermatog 62.3 30 0.00066 38.3 8.0 63 432-494 194-267 (569)
414 cd02684 MIT_2 MIT: domain cont 62.0 53 0.0011 27.3 7.8 33 380-412 5-37 (75)
415 KOG0890 Protein kinase of the 61.9 67 0.0015 42.0 11.8 104 377-488 1666-1788(2382)
416 PF10938 YfdX: YfdX protein; 61.5 95 0.0021 29.3 10.3 101 383-483 4-145 (155)
417 KOG3807 Predicted membrane pro 59.4 1.1E+02 0.0025 33.2 11.4 109 385-497 279-404 (556)
418 PRK15490 Vi polysaccharide bio 59.2 83 0.0018 36.0 11.0 66 417-487 38-103 (578)
419 COG4649 Uncharacterized protei 59.0 1E+02 0.0022 30.8 10.2 77 386-468 137-213 (221)
420 COG5091 SGT1 Suppressor of G2 59.0 9.2 0.0002 39.9 3.3 97 391-488 5-112 (368)
421 KOG2422 Uncharacterized conser 58.7 47 0.001 38.0 8.9 100 384-487 345-451 (665)
422 PF09797 NatB_MDM20: N-acetylt 58.7 44 0.00096 35.0 8.4 47 434-480 196-242 (365)
423 cd02683 MIT_1 MIT: domain cont 58.1 85 0.0018 26.3 8.4 58 397-468 3-60 (77)
424 PF11846 DUF3366: Domain of un 57.7 66 0.0014 30.5 8.7 57 392-452 119-175 (193)
425 KOG0985 Vesicle coat protein c 57.5 1.4E+02 0.0031 36.7 12.7 62 420-486 1103-1164(1666)
426 COG1747 Uncharacterized N-term 57.3 2E+02 0.0044 32.9 13.3 109 381-497 99-247 (711)
427 KOG1464 COP9 signalosome, subu 56.3 34 0.00075 36.1 6.9 102 386-487 150-263 (440)
428 KOG1258 mRNA processing protei 55.9 3.1E+02 0.0068 31.5 14.7 111 384-500 369-486 (577)
429 cd09240 BRO1_Alix Protein-inte 55.7 1.2E+02 0.0025 32.1 10.9 27 457-483 257-283 (346)
430 cd02656 MIT MIT: domain contai 55.2 20 0.00044 29.1 4.2 17 433-449 18-34 (75)
431 PF09205 DUF1955: Domain of un 54.7 81 0.0018 30.2 8.5 61 424-484 88-149 (161)
432 TIGR03504 FimV_Cterm FimV C-te 54.3 21 0.00045 27.1 3.8 26 425-450 3-28 (44)
433 smart00386 HAT HAT (Half-A-TPR 53.9 38 0.00082 21.7 4.7 25 470-494 2-26 (33)
434 PF04097 Nic96: Nup93/Nic96; 53.7 65 0.0014 36.7 9.3 104 380-490 413-539 (613)
435 KOG0687 26S proteasome regulat 52.9 1.1E+02 0.0023 33.1 9.9 81 398-478 81-167 (393)
436 COG3107 LppC Putative lipoprot 52.5 1.5E+02 0.0032 33.9 11.4 101 380-486 62-164 (604)
437 KOG4563 Cell cycle-regulated h 52.4 38 0.00082 36.7 6.6 65 379-443 39-105 (400)
438 KOG2168 Cullins [Cell cycle co 52.2 2.6E+02 0.0057 33.4 13.8 101 381-488 622-739 (835)
439 PF15469 Sec5: Exocyst complex 51.7 2.1E+02 0.0046 26.9 11.3 19 470-488 154-172 (182)
440 smart00777 Mad3_BUB1_I Mad3/BU 51.1 84 0.0018 28.9 7.9 74 401-480 46-124 (125)
441 PF04212 MIT: MIT (microtubule 51.0 20 0.00044 28.6 3.5 25 425-449 9-33 (69)
442 COG3947 Response regulator con 50.7 49 0.0011 35.2 7.0 57 385-447 283-339 (361)
443 COG5159 RPN6 26S proteasome re 50.6 85 0.0018 33.5 8.7 90 396-485 100-195 (421)
444 PF12921 ATP13: Mitochondrial 50.6 1.2E+02 0.0026 27.5 8.9 65 422-486 3-83 (126)
445 COG2178 Predicted RNA-binding 50.4 2.2E+02 0.0049 28.5 11.1 99 382-481 30-147 (204)
446 KOG1538 Uncharacterized conser 50.3 1.1E+02 0.0023 36.0 10.0 39 456-498 805-843 (1081)
447 KOG2758 Translation initiation 50.0 3.7E+02 0.008 29.3 13.3 68 379-449 127-195 (432)
448 smart00101 14_3_3 14-3-3 homol 49.8 63 0.0014 32.9 7.5 53 397-449 144-199 (244)
449 smart00386 HAT HAT (Half-A-TPR 49.8 46 0.00099 21.2 4.5 27 436-462 2-28 (33)
450 PF09477 Type_III_YscG: Bacter 49.1 2.1E+02 0.0046 26.3 9.9 87 384-481 9-95 (116)
451 PF07219 HemY_N: HemY protein 48.7 80 0.0017 27.6 7.2 50 421-470 59-108 (108)
452 KOG2582 COP9 signalosome, subu 48.6 49 0.0011 36.0 6.8 108 380-490 101-217 (422)
453 cd00280 TRFH Telomeric Repeat 48.6 2.9E+02 0.0063 27.6 14.9 115 381-498 13-153 (200)
454 PF07219 HemY_N: HemY protein 47.5 76 0.0016 27.8 6.9 32 379-410 57-88 (108)
455 PF08238 Sel1: Sel1 repeat; I 46.8 41 0.0009 23.0 4.2 29 456-484 2-37 (39)
456 PRK11619 lytic murein transgly 46.6 1.2E+02 0.0025 35.1 9.9 56 428-483 319-374 (644)
457 cd02679 MIT_spastin MIT: domai 46.4 40 0.00086 28.7 4.7 30 383-412 10-39 (79)
458 cd09239 BRO1_HD-PTP_like Prote 45.9 3.1E+02 0.0067 29.3 12.3 27 457-483 254-280 (361)
459 TIGR03362 VI_chp_7 type VI sec 45.8 61 0.0013 33.9 6.9 49 433-482 111-159 (301)
460 PF10607 CLTH: CTLH/CRA C-term 45.5 1.9E+02 0.004 25.9 9.3 58 390-448 10-67 (145)
461 KOG0276 Vesicle coat complex C 45.4 1.2E+02 0.0025 35.3 9.3 18 464-481 730-747 (794)
462 smart00671 SEL1 Sel1-like repe 44.9 36 0.00079 22.7 3.6 27 457-483 3-33 (36)
463 cd09243 BRO1_Brox_like Protein 44.9 2.5E+02 0.0055 30.0 11.5 27 457-483 250-276 (353)
464 COG3014 Uncharacterized protei 44.5 2.3E+02 0.0051 30.9 10.9 113 381-494 125-252 (449)
465 PF12854 PPR_1: PPR repeat 44.3 43 0.00092 23.4 3.9 26 421-446 7-32 (34)
466 PF01535 PPR: PPR repeat; Int 44.1 35 0.00076 21.8 3.3 24 425-448 4-27 (31)
467 PF13041 PPR_2: PPR repeat fam 43.5 97 0.0021 22.7 6.0 28 423-450 5-32 (50)
468 KOG1920 IkappaB kinase complex 43.4 61 0.0013 39.8 7.2 23 426-448 957-979 (1265)
469 TIGR00756 PPR pentatricopeptid 43.4 51 0.0011 21.2 4.1 26 424-449 3-28 (35)
470 cd08977 SusD starch binding ou 43.3 59 0.0013 33.6 6.4 53 397-449 141-209 (359)
471 PF03097 BRO1: BRO1-like domai 42.7 2.3E+02 0.0049 29.7 10.7 27 457-483 241-267 (377)
472 KOG1914 mRNA cleavage and poly 41.8 3.4E+02 0.0074 31.3 12.1 88 392-484 377-464 (656)
473 cd09241 BRO1_ScRim20-like Prot 41.8 2.6E+02 0.0056 29.6 11.0 27 457-483 239-265 (355)
474 TIGR01716 RGG_Cterm transcript 41.2 3.2E+02 0.007 25.9 10.8 65 420-484 127-197 (220)
475 cd02678 MIT_VPS4 MIT: domain c 40.1 1.8E+02 0.0039 23.8 7.6 13 398-410 4-16 (75)
476 KOG2396 HAT (Half-A-TPR) repea 39.6 1.5E+02 0.0031 33.7 8.8 73 381-459 105-178 (568)
477 KOG0739 AAA+-type ATPase [Post 39.5 1.2E+02 0.0026 32.6 7.9 43 437-479 33-76 (439)
478 PF15469 Sec5: Exocyst complex 38.9 3.4E+02 0.0074 25.6 11.2 48 401-452 70-117 (182)
479 KOG3616 Selective LIM binding 38.7 1.8E+02 0.0039 34.8 9.6 36 453-488 993-1028(1636)
480 KOG1464 COP9 signalosome, subu 38.6 1.4E+02 0.003 31.8 8.0 102 380-482 64-172 (440)
481 KOG2758 Translation initiation 37.9 2.3E+02 0.0049 30.8 9.6 68 417-484 125-196 (432)
482 KOG0508 Ankyrin repeat protein 37.9 4.8 0.0001 44.7 -2.6 196 288-485 135-367 (615)
483 KOG2034 Vacuolar sorting prote 37.6 29 0.00062 41.2 3.3 25 422-446 390-414 (911)
484 KOG4322 Anaphase-promoting com 37.5 2.2E+02 0.0048 31.8 9.7 104 380-483 272-381 (482)
485 PF12753 Nro1: Nuclear pore co 36.6 43 0.00094 36.5 4.2 46 437-484 334-391 (404)
486 PF07980 SusD: SusD family; I 36.2 60 0.0013 31.1 4.8 30 420-449 132-161 (266)
487 PF14689 SPOB_a: Sensor_kinase 36.2 1.7E+02 0.0038 23.3 6.7 29 421-449 23-51 (62)
488 PRK10316 hypothetical protein; 36.0 4.7E+02 0.01 26.4 12.1 98 385-483 58-197 (209)
489 PF12854 PPR_1: PPR repeat 36.0 73 0.0016 22.2 4.0 28 454-481 6-33 (34)
490 KOG0739 AAA+-type ATPase [Post 35.7 1.3E+02 0.0027 32.5 7.3 31 381-411 10-40 (439)
491 cd02680 MIT_calpain7_2 MIT: do 35.4 70 0.0015 27.0 4.5 18 433-450 18-35 (75)
492 KOG0890 Protein kinase of the 35.0 4.8E+02 0.01 34.9 13.2 67 417-485 1666-1732(2382)
493 COG4259 Uncharacterized protei 34.9 1.6E+02 0.0035 26.9 6.8 41 454-494 71-111 (121)
494 PF12805 FUSC-like: FUSC-like 34.5 2.2E+02 0.0048 28.9 8.8 31 471-501 241-276 (284)
495 PF02064 MAS20: MAS20 protein 34.3 96 0.0021 28.5 5.5 28 426-453 68-95 (121)
496 PF13812 PPR_3: Pentatricopept 34.2 95 0.0021 20.3 4.3 26 424-449 4-29 (34)
497 cd09247 BRO1_Alix_like_2 Prote 34.1 1.4E+02 0.0031 31.5 7.6 30 455-484 253-282 (346)
498 KOG2880 SMAD6 interacting prot 34.1 2.4E+02 0.0053 30.7 9.1 56 380-435 34-90 (424)
499 smart00299 CLH Clathrin heavy 33.9 2.4E+02 0.0053 24.8 8.1 80 392-479 18-106 (140)
500 PRK12798 chemotaxis protein; R 33.9 5.6E+02 0.012 28.5 12.0 94 388-485 155-287 (421)
No 1
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=2.2e-18 Score=173.87 Aligned_cols=120 Identities=26% Similarity=0.381 Sum_probs=114.5
Q ss_pred CcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 010717 377 AGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVS 456 (503)
Q Consensus 377 ~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~k 456 (503)
....++.++..|+.+++.++|.+|+..|++||+| +|.++..|+|||.+|.++|+|+.|+++|+.||.+||.+.+
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ysk 150 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSK 150 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHH
Confidence 4457889999999999999999999999999999 6677899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717 457 VLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502 (503)
Q Consensus 457 AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL 502 (503)
+|.|+|.+|+.+|+|++|++.|+++|+|||+|...+..|..+++.+
T Consensus 151 ay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 151 AYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999988765
No 2
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1e-15 Score=163.57 Aligned_cols=116 Identities=27% Similarity=0.446 Sum_probs=111.5
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
.+...+..|+++|+.+||.+|++.|++||+. +|+++.+|+|||.||++++++.+|+++|++||+++|.+.++|+
T Consensus 357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~ 430 (539)
T KOG0548|consen 357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKR------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYL 430 (539)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhc------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHH
Confidence 4777888999999999999999999999987 6788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM 501 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl 501 (503)
|.|.|+..+++|++|++.|++++++||.+.++...+++|.++
T Consensus 431 RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 431 RKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999875
No 3
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.6e-15 Score=158.28 Aligned_cols=124 Identities=31% Similarity=0.481 Sum_probs=111.9
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC---------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717 379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGD---------MATMMEVLSTRASCYKEVGEYKKAVADCSKVLE 449 (503)
Q Consensus 379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~d---------dpd~A~aysNrAlcylrLGdyeeALedaekALk 449 (503)
..+...+..|+.+|+.++|..|+..|++|+..+..... ......++.|++.||+++++|.+|++.|+++|.
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 35777889999999999999999999999988763211 123456799999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717 450 QDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502 (503)
Q Consensus 450 LdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL 502 (503)
++|++.+++||+|.||..+++|+.|+.+|+++++++|.|..++..|..|++.+
T Consensus 286 ~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 286 LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997754
No 4
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.59 E-value=3e-14 Score=129.36 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 010717 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRA 462 (503)
Q Consensus 383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA 462 (503)
.+..+|.+++..|+|++|+++|++++.+ +|.+..+|.++|.++.++|++++|+..|+++++++|+++.+++++|
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMA------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 3667899999999999999999999988 6778899999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717 463 LLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502 (503)
Q Consensus 463 ~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL 502 (503)
.+|..+|++++|++.|+++++++|++.+....+..++.++
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888888777665
No 5
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.58 E-value=3.6e-14 Score=146.85 Aligned_cols=115 Identities=18% Similarity=0.272 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 010717 382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQR 461 (503)
Q Consensus 382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrl 461 (503)
..++..|..++..++|++|+++|++||++ +|.+..+|.+||.||++++++++|+.+|+++|.++|.+..+|+++
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~l 76 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDL------DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRK 76 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 45788899999999999999999999998 567789999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717 462 ALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502 (503)
Q Consensus 462 A~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL 502 (503)
|.+|+.+|+|++|+++|+++++++|++..+...+..|...+
T Consensus 77 g~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 77 GTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987655
No 6
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.57 E-value=1.5e-14 Score=140.37 Aligned_cols=123 Identities=31% Similarity=0.418 Sum_probs=114.5
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717 379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVL 458 (503)
Q Consensus 379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAl 458 (503)
..+..++..|+.+|+.|+|.+|...|..||+++|... ......+|.|||.|+++++..+.|+.+|.++|+|.|.+.+|+
T Consensus 93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~-~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl 171 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS-TEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL 171 (271)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc-HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence 4577899999999999999999999999999988755 356788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717 459 VQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502 (503)
Q Consensus 459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL 502 (503)
.|+|.+|..+.+|++|+++|.+++.++|...+++..+++|..++
T Consensus 172 ~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i 215 (271)
T KOG4234|consen 172 ERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKI 215 (271)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHH
Confidence 99999999999999999999999999999999999999886554
No 7
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.53 E-value=2.5e-13 Score=118.44 Aligned_cols=117 Identities=14% Similarity=0.108 Sum_probs=108.8
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
....+..+|..+++.+++++|+++|++++++ .+.+..++.+++.|+++++++++|+.+++++++++|++...++
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 89 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAY------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYF 89 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 3567889999999999999999999999988 5567899999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL 502 (503)
.+|.+|..+|++++|+..|+++++++|++........++.+.+
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 132 (135)
T TIGR02552 90 HAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML 132 (135)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888877777665
No 8
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=3.8e-13 Score=144.07 Aligned_cols=113 Identities=21% Similarity=0.316 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ 460 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr 460 (503)
+..++.+|+.+|..|||+.|+.+|++||.| +|....+|+||+.||..+++|++|+++..+++++.|+|+++|.+
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l------~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r 75 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIML------SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSR 75 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHcc------CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHH
Confidence 456788999999999999999999999999 55678999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717 461 RALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT 499 (503)
Q Consensus 461 lA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq 499 (503)
+|.++..+|+|++|+..|.++|+++|.|......|.++.
T Consensus 76 ~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 76 KGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred hHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 999999999999999999999999999999988888765
No 9
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.43 E-value=3.4e-12 Score=119.46 Aligned_cols=116 Identities=12% Similarity=0.083 Sum_probs=104.3
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
..+.++.+|..++..|++++|++.|+.++.+ ++.....|.++|.|+..+|+|++|+..|.+++.++|+++.+++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 5778999999999999999999999999999 7788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM 501 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl 501 (503)
+.|.||+.+|+.++|++.|+.++.+--++++-.....+++.+
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~ 149 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKM 149 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHH
Confidence 999999999999999999999999985554444444444443
No 10
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=5.8e-13 Score=141.73 Aligned_cols=122 Identities=29% Similarity=0.395 Sum_probs=101.8
Q ss_pred hCCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717 370 EGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLE 449 (503)
Q Consensus 370 EaL~~~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALk 449 (503)
.++......+.+..++++|+.+|+.++|++||++|++||+++| +....|.||+.||..+|++++.+++|.++|+
T Consensus 104 ~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p------~epiFYsNraAcY~~lgd~~~Vied~TkALE 177 (606)
T KOG0547|consen 104 KAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCP------DEPIFYSNRAACYESLGDWEKVIEDCTKALE 177 (606)
T ss_pred hccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCC------CCchhhhhHHHHHHHHhhHHHHHHHHHHHhh
Confidence 3334444456899999999999999999999999999999944 4468999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHH
Q 010717 450 QDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDP--SNRIARSTIHRL 498 (503)
Q Consensus 450 LdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP--en~eAk~~La~L 498 (503)
++|++.++++||+.++..+|++++|+.++. ++-|.. +|..+...+.++
T Consensus 178 l~P~Y~KAl~RRA~A~E~lg~~~eal~D~t-v~ci~~~F~n~s~~~~~eR~ 227 (606)
T KOG0547|consen 178 LNPDYVKALLRRASAHEQLGKFDEALFDVT-VLCILEGFQNASIEPMAERV 227 (606)
T ss_pred cCcHHHHHHHHHHHHHHhhccHHHHHHhhh-HHHHhhhcccchhHHHHHHH
Confidence 999999999999999999999999999986 444433 344444444443
No 11
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.42 E-value=3.2e-13 Score=139.19 Aligned_cols=116 Identities=23% Similarity=0.326 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ 460 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr 460 (503)
...++.+|+.||++|+|++||++|.++|.+ +|..+..+.||+.+|+++++|..|..+|+.|+.|+..+.++|-|
T Consensus 97 ~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSR 170 (536)
T KOG4648|consen 97 ASEIKERGNTYFKQGKYEEAIDCYSTAIAV------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSR 170 (536)
T ss_pred hHHHHHhhhhhhhccchhHHHHHhhhhhcc------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHH
Confidence 345789999999999999999999999998 66778899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717 461 RALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502 (503)
Q Consensus 461 lA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL 502 (503)
++.+-..||..++|.++++.+|+|.|++.+.++.++++..++
T Consensus 171 R~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~ 212 (536)
T KOG4648|consen 171 RMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLR 212 (536)
T ss_pred HHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchH
Confidence 999999999999999999999999999999999888876543
No 12
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.38 E-value=8.7e-12 Score=119.43 Aligned_cols=113 Identities=16% Similarity=0.099 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHcCCCCHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCY-KEVGE--YKKAVADCSKVLEQDDTNVS 456 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcy-lrLGd--yeeALedaekALkLdPd~~k 456 (503)
..+.|..+|..|...+++++|++.|++|+++ .|++..++.++|.|+ ...|+ +++|++.++++++++|++..
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~ 145 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQL------RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVT 145 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChh
Confidence 5889999999999999999999999999999 667889999999985 67787 59999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717 457 VLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL 498 (503)
Q Consensus 457 AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L 498 (503)
+++.+|.+++.+|+|++|+.+|+++++++|.+..-...++.+
T Consensus 146 al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~i 187 (198)
T PRK10370 146 ALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVESI 187 (198)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 999999999999999999999999999999875544444444
No 13
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.37 E-value=1.8e-11 Score=102.75 Aligned_cols=114 Identities=18% Similarity=0.182 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHH
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN---VSV 457 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~---~kA 457 (503)
+..++.+|..+++.++|++|++.|.+++...+ +.+....++..++.++++.+++++|+..|++++.++|+. ..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 78 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYP---KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDA 78 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHH
Confidence 45788999999999999999999999997632 233446789999999999999999999999999998875 678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010717 458 LVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHR 497 (503)
Q Consensus 458 lyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~ 497 (503)
++.+|.+|..++++++|+..|+++++..|++..+...+.+
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 118 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQKR 118 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHhc
Confidence 9999999999999999999999999999999887776554
No 14
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.36 E-value=2.4e-11 Score=122.29 Aligned_cols=108 Identities=21% Similarity=0.220 Sum_probs=102.1
Q ss_pred CcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 010717 377 AGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVS 456 (503)
Q Consensus 377 ~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~k 456 (503)
+...+..++.+|.++...|++.+|+..|++|+++ +|+...+|.++|.++..+|++++|++.|+++++++|++..
T Consensus 60 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~ 133 (296)
T PRK11189 60 DEERAQLHYERGVLYDSLGLRALARNDFSQALAL------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY 133 (296)
T ss_pred cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 3446888999999999999999999999999998 6677899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 010717 457 VLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRI 490 (503)
Q Consensus 457 AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~e 490 (503)
+++++|.+|+..|++++|++.|+++++++|++..
T Consensus 134 a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 134 AYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999999999999863
No 15
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.8e-12 Score=130.67 Aligned_cols=128 Identities=20% Similarity=0.251 Sum_probs=111.0
Q ss_pred cccHHHhCCCCC----CCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHH
Q 010717 364 GTTTELEGLPPP----PAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKK 439 (503)
Q Consensus 364 aae~eLEaL~~~----~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyee 439 (503)
.....++.+... .+.+.|.-++..|+.||+.++|..|++.|++.|.. +.++....+.+|.|||.|.+.+|+|..
T Consensus 60 ~~~~~LqslK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--kc~D~dlnavLY~NRAAa~~~l~NyRs 137 (390)
T KOG0551|consen 60 PDNVCLQSLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--KCADPDLNAVLYTNRAAAQLYLGNYRS 137 (390)
T ss_pred ccHHHHHHhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--cCCCccHHHHHHhhHHHHHHHHHHHHH
Confidence 344455554433 34468889999999999999999999999999987 677666789999999999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 010717 440 AVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARS 493 (503)
Q Consensus 440 ALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~ 493 (503)
||.+|.+++.++|.+.+++||-|.|++.|+++++|+.++++.++++-+...+..
T Consensus 138 ~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~ 191 (390)
T KOG0551|consen 138 ALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAIE 191 (390)
T ss_pred HHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999988866555443
No 16
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=3.3e-12 Score=133.94 Aligned_cols=120 Identities=22% Similarity=0.333 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
....++..|+.+|+.|+|.+|.++|++||.++|.+ ....+.+|.||+.+..++|+..+||.+|+.+++||+..+++++
T Consensus 248 ~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n--~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall 325 (486)
T KOG0550|consen 248 KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN--KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALL 325 (486)
T ss_pred HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc--cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHH
Confidence 45567889999999999999999999999997764 3457899999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL 502 (503)
++|.||+.+++|++|+++|++++++.-. .++++.|++++..|
T Consensus 326 ~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aL 367 (486)
T KOG0550|consen 326 RRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLAL 367 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHH
Confidence 9999999999999999999999999877 77777777776543
No 17
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.29 E-value=4.9e-11 Score=90.84 Aligned_cols=99 Identities=28% Similarity=0.414 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 010717 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRA 462 (503)
Q Consensus 383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA 462 (503)
+++.+|..++..+++++|+++|++++++ .+....++..++.|+...+++++|++.+++++++.|....+++.++
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 75 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLG 75 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHH
Confidence 4778999999999999999999999987 3344578999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC
Q 010717 463 LLYESMEKYKLGAEDLRTVLKIDPS 487 (503)
Q Consensus 463 ~Ay~~LGdyeeAle~LqkALkLDPe 487 (503)
.++...+++++|++.++++++++|.
T Consensus 76 ~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 76 LAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999998874
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.26 E-value=8.9e-11 Score=128.48 Aligned_cols=114 Identities=20% Similarity=0.218 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
.+.++..+|..++..|++++|++.|++++++ +|.....|.+++.+++.++++++|+.+|+++++++|+++.+++
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 403 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIEL------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYY 403 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 5667788888888888999999988888887 4556678888888888888888888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT 499 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq 499 (503)
.+|.+|+.+|++++|+++|+++++++|++..+...+..+.
T Consensus 404 ~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 404 HRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence 8888888888888888888888888888877666655543
No 19
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.25 E-value=2.3e-10 Score=105.87 Aligned_cols=112 Identities=22% Similarity=0.277 Sum_probs=99.3
Q ss_pred CCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 010717 375 PPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN 454 (503)
Q Consensus 375 ~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~ 454 (503)
......+..++.+|..+...+++++|+++|++++++.+. .+....++.++|.|+.++|++++|++.+++++.++|.+
T Consensus 29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED---PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ 105 (172)
T ss_pred ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 344457888999999999999999999999999987432 22346789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCH
Q 010717 455 VSVLVQRALLYESMEK--------------YKLGAEDLRTVLKIDPSNR 489 (503)
Q Consensus 455 ~kAlyrlA~Ay~~LGd--------------yeeAle~LqkALkLDPen~ 489 (503)
..+++.+|.+|..+++ +++|+++++++++++|++-
T Consensus 106 ~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 106 PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 9999999999999988 7889999999999999883
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.24 E-value=1e-10 Score=128.09 Aligned_cols=115 Identities=16% Similarity=0.041 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
....+..+|.+++..++|++|++.|++++++ +|.+..+|+++|.+++.+|++++|+.+|+++++++|++..+++
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~ 437 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKL------NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHI 437 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHH
Confidence 4678889999999999999999999999988 5566789999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK 500 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk 500 (503)
.+|.+|..+|++++|+..|+++++++|++..+...+..+..
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~ 478 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLL 478 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 99999999999999999999999999999887777766543
No 21
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.22 E-value=4.2e-11 Score=93.99 Aligned_cols=66 Identities=27% Similarity=0.454 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 010717 421 MEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESME-KYKLGAEDLRTVLKIDP 486 (503)
Q Consensus 421 A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LG-dyeeAle~LqkALkLDP 486 (503)
+.+|.++|.+++++++|++|+.+|+++|+++|+++.+++++|.+|+.++ ++++|+++|+++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 5678888888888888888888888888888888888888888888888 68888888888888887
No 22
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.21 E-value=1.3e-11 Score=131.43 Aligned_cols=117 Identities=24% Similarity=0.278 Sum_probs=111.0
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
.+..++.+++.+++.++|+.|+.+|.+||++ ++..+.++.+|+..+++.++|..|+.|+.++|+++|...++||
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~l------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~ 76 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIEL------DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYV 76 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhc------CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheee
Confidence 3567888999999999999999999999999 6777899999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL 502 (503)
++|.+++.++++.+|+..|++...+.|+++.+++.+.+|+.+.
T Consensus 77 rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~v 119 (476)
T KOG0376|consen 77 RRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIV 119 (476)
T ss_pred eccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999997653
No 23
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.21 E-value=7e-11 Score=128.78 Aligned_cols=114 Identities=18% Similarity=0.219 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
.++++.++|+++...+.+++|+.+|.+|+++ .|+.+.+++|++.+|.++|++++|+..|+++|+++|..++++.
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v------~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~ 426 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEV------FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALS 426 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhh------ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHH
Confidence 4566666666666666666666666666666 3455566666666666666666666666666666666666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT 499 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq 499 (503)
++|..|..+|+...|+.+|.++++++|...+++..|..+.
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~ 466 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIY 466 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHh
Confidence 6666666666666666666666666665555555555443
No 24
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.19 E-value=1e-10 Score=127.48 Aligned_cols=116 Identities=22% Similarity=0.246 Sum_probs=73.4
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717 379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVL 458 (503)
Q Consensus 379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAl 458 (503)
.-++++.++|.+|-++|++++|+.+|++||.+ +|..+.+|.|+|..|.++|+...|+++|.+||.++|..++++
T Consensus 386 ~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAh 459 (966)
T KOG4626|consen 386 EFAAAHNNLASIYKQQGNLDDAIMCYKEALRI------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAH 459 (966)
T ss_pred hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHH
Confidence 34445556666666666666666666666666 455666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717 459 VQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK 500 (503)
Q Consensus 459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk 500 (503)
-++|.+|...|+..+|+..|+++|+|+|+.+++.-.+..+.+
T Consensus 460 sNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 460 SNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred hhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence 666666666666666666666666666666666555554433
No 25
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.18 E-value=1.3e-09 Score=100.22 Aligned_cols=114 Identities=19% Similarity=0.159 Sum_probs=97.0
Q ss_pred CCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 010717 374 PPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT 453 (503)
Q Consensus 374 ~~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd 453 (503)
....+..+..+..+|..+...++|++|+.+|++|+.+.+. ......+|.++|.++..+|++++|++.|++++.++|.
T Consensus 28 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~---~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~ 104 (168)
T CHL00033 28 TTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID---PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF 104 (168)
T ss_pred CCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc---chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 4445557888999999999999999999999999988432 2335679999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHHhCCCCHH
Q 010717 454 NVSVLVQRALLYE-------SMEKYK-------LGAEDLRTVLKIDPSNRI 490 (503)
Q Consensus 454 ~~kAlyrlA~Ay~-------~LGdye-------eAle~LqkALkLDPen~e 490 (503)
....++.++.+|. .+|+++ +|++.|++++.++|++..
T Consensus 105 ~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~ 155 (168)
T CHL00033 105 LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI 155 (168)
T ss_pred cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence 9999999999998 777766 677777788899997643
No 26
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.18 E-value=9.8e-10 Score=99.51 Aligned_cols=113 Identities=19% Similarity=0.146 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 010717 382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQR 461 (503)
Q Consensus 382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrl 461 (503)
..+..+|..++..+++++|+++|+++++.. ..+.....+.+++.|+.+.|++++|++.++++++++|++..+++.+
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 175 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDP----LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLEL 175 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcc----ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHH
Confidence 344445555555555555555555555321 1123345566677777777777777777777777777777777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717 462 ALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL 498 (503)
Q Consensus 462 A~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L 498 (503)
+.++..++++++|++.+++++++.|.+......+..+
T Consensus 176 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 212 (234)
T TIGR02521 176 AELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRI 212 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 7777777777777777777777766665554444443
No 27
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.16 E-value=1.6e-09 Score=98.06 Aligned_cols=115 Identities=17% Similarity=0.168 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD--DTNVSV 457 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd--Pd~~kA 457 (503)
....+..+|..++..+++++|+++|++++++ .+....++.+++.+++..|++++|++.+++++... +.....
T Consensus 64 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 137 (234)
T TIGR02521 64 DYLAYLALALYYQQLGELEKAEDSFRRALTL------NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARS 137 (234)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHH
Confidence 4667778888888888888888888888877 33455688888888888888888888888888753 455678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717 458 LVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK 500 (503)
Q Consensus 458 lyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk 500 (503)
++.+|.+|..++++++|++.|+++++++|++..+...+..+..
T Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 180 (234)
T TIGR02521 138 LENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYY 180 (234)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHH
Confidence 8888999999999999999999999998888777776666543
No 28
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.15 E-value=9.3e-10 Score=110.81 Aligned_cols=116 Identities=17% Similarity=0.118 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNV---- 455 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~---- 455 (503)
.+.++..+|..+...++|++|++.|++|+++ +|....+|.++|.+++..|++++|+++|+++++++|+++
T Consensus 97 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~ 170 (296)
T PRK11189 97 MADAYNYLGIYLTQAGNFDAAYEAFDSVLEL------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL 170 (296)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 5789999999999999999999999999999 667788999999999999999999999998887766532
Q ss_pred ------------------------------------------------------------------HHHHHHHHHHHHcC
Q 010717 456 ------------------------------------------------------------------SVLVQRALLYESME 469 (503)
Q Consensus 456 ------------------------------------------------------------------kAlyrlA~Ay~~LG 469 (503)
++|+++|.+|..+|
T Consensus 171 ~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g 250 (296)
T PRK11189 171 WLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLG 250 (296)
T ss_pred HHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCC
Confidence 24666788899999
Q ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHhh
Q 010717 470 KYKLGAEDLRTVLKIDP-SNRIARSTIHRLTKM 501 (503)
Q Consensus 470 dyeeAle~LqkALkLDP-en~eAk~~La~Lqkl 501 (503)
++++|+.+|+++++++| +..+.+..+.++.++
T Consensus 251 ~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 251 DLDEAAALFKLALANNVYNFVEHRYALLELALL 283 (296)
T ss_pred CHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 99999999999999996 777877777776654
No 29
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.13 E-value=6.6e-10 Score=128.99 Aligned_cols=114 Identities=9% Similarity=0.018 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ 460 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr 460 (503)
...+..+|.++.+.|++++|+++|++++++ +|+...++.++|.++..+|++++|++.|+++++++|+++.++++
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l------~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~n 682 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALEL------EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQ 682 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 567888999999999999999999999988 66778899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717 461 RALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK 500 (503)
Q Consensus 461 lA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk 500 (503)
+|.+|..+|++++|+++|+++++++|++..+.....++.+
T Consensus 683 LA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~ 722 (987)
T PRK09782 683 LAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQ 722 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHH
Confidence 9999999999999999999999999998777766665543
No 30
>PRK12370 invasion protein regulator; Provisional
Probab=99.13 E-value=9.3e-10 Score=119.84 Aligned_cols=114 Identities=12% Similarity=-0.001 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
.+.++..+|.++...+++++|++.|++|+++ +|..+.+|+.+|.+++.+|++++|++.++++++++|.++.+++
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~ 410 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLL------SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGI 410 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHH
Confidence 4778889999999999999999999999999 6677889999999999999999999999999999999988888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLKID-PSNRIARSTIHRLT 499 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALkLD-Pen~eAk~~La~Lq 499 (503)
.++.+++.++++++|++.++++++.. |+++.+...+..+.
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l 451 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFL 451 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHH
Confidence 88888888999999999999999885 77777766666554
No 31
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.12 E-value=3e-10 Score=89.15 Aligned_cols=67 Identities=27% Similarity=0.382 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCC
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVG-EYKKAVADCSKVLEQDD 452 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLG-dyeeALedaekALkLdP 452 (503)
.+..+..+|.+++..++|++|+++|++||++ +|.+..+|+++|.||.+++ ++++|+++++++|+++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4788999999999999999999999999999 6788999999999999999 79999999999999997
No 32
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.12 E-value=1.7e-09 Score=103.16 Aligned_cols=115 Identities=14% Similarity=0.175 Sum_probs=100.9
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH--
Q 010717 379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVS-- 456 (503)
Q Consensus 379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~k-- 456 (503)
..+..++.+|..++..++|++|++.|++++.+.+ +.+....+++.+|.+|++++++++|+..|+++++++|++..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYP---FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3678899999999999999999999999998733 23445578999999999999999999999999999998765
Q ss_pred -HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010717 457 -VLVQRALLYESM--------EKYKLGAEDLRTVLKIDPSNRIARSTIH 496 (503)
Q Consensus 457 -AlyrlA~Ay~~L--------GdyeeAle~LqkALkLDPen~eAk~~La 496 (503)
+++.+|.++..+ +++++|++.|+++++.+|++..+...+.
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~ 156 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK 156 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence 799999999987 8899999999999999999976655544
No 33
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=6.4e-10 Score=111.05 Aligned_cols=122 Identities=22% Similarity=0.303 Sum_probs=103.1
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh-----cCCC-------hhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010717 379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEK-----SGDM-------ATMMEVLSTRASCYKEVGEYKKAVADCSK 446 (503)
Q Consensus 379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk-----~~dd-------pd~A~aysNrAlcylrLGdyeeALedaek 446 (503)
+....+...|+.+|+.++|.+|+..|..||..+.+ .+.+ .....++.|++.|++..++|-++++.|..
T Consensus 176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 34567889999999999999999999999865543 1212 23456799999999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHh
Q 010717 447 VLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNR-IARSTIHRLTK 500 (503)
Q Consensus 447 ALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~-eAk~~La~Lqk 500 (503)
+|..+|.+.+|||++|.++...=+.++|.++|+++|+++|.-. .+.++|+.++.
T Consensus 256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~ 310 (329)
T KOG0545|consen 256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLEN 310 (329)
T ss_pred HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999763 44555555543
No 34
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.09 E-value=1.6e-09 Score=121.81 Aligned_cols=115 Identities=6% Similarity=-0.051 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
.+++++.+|.+....|+|++|+.+|+.++++ .|+...++.+++.++.+++++++|+..+++++..+|++..+++
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 4788999999999999999999999999999 7788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK 500 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk 500 (503)
.+|.++..+|+|++|++.|+++++.+|++.++...+..+.+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~ 199 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLT 199 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999998888877776654
No 35
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.08 E-value=4.7e-10 Score=92.09 Aligned_cols=83 Identities=25% Similarity=0.321 Sum_probs=72.8
Q ss_pred hCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Q 010717 394 AGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKL 473 (503)
Q Consensus 394 qGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyee 473 (503)
+++|++|+.+|+++++..+. ++ +...+..+|.||+++|+|++|++.+++ +++++.+...++.+|.||..+++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~---~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT---NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG---TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCC---Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHH
Confidence 68999999999999998553 12 566788899999999999999999999 88889889999999999999999999
Q ss_pred HHHHHHHH
Q 010717 474 GAEDLRTV 481 (503)
Q Consensus 474 Ale~LqkA 481 (503)
|++.|+++
T Consensus 77 Ai~~l~~~ 84 (84)
T PF12895_consen 77 AIKALEKA 84 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99999875
No 36
>PRK12370 invasion protein regulator; Provisional
Probab=99.07 E-value=1.5e-09 Score=118.20 Aligned_cols=107 Identities=11% Similarity=-0.062 Sum_probs=96.1
Q ss_pred hHHHHHHHHHHHHH---------hCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 010717 380 TGAAAKNKGVDNQK---------AGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ 450 (503)
Q Consensus 380 ~A~alk~lGn~~fk---------qGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL 450 (503)
.+..+..+|.++.. .+++++|++.+++|+++ +|.+..+|..+|.++..+|++++|++.|++++++
T Consensus 294 ~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l 367 (553)
T PRK12370 294 SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL 367 (553)
T ss_pred cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 46677777776653 34589999999999999 6778899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 010717 451 DDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIAR 492 (503)
Q Consensus 451 dPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk 492 (503)
+|+++.+++.+|.+|..+|++++|++.|+++++++|.+..+.
T Consensus 368 ~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~ 409 (553)
T PRK12370 368 SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAG 409 (553)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhH
Confidence 999999999999999999999999999999999999986553
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.05 E-value=1.9e-10 Score=125.98 Aligned_cols=113 Identities=19% Similarity=0.170 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
..+.|..+|++|--++|++.||++|++||.+ +|.++.+|..+|.-+....+||+|..+|++||.++|++-.|||
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQl------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwY 493 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQL------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWY 493 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhcc------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHH
Confidence 6778999999999999999999999999988 4555666666666666666666666666666666666666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL 498 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L 498 (503)
-+|.+|++.++++.|.-.|++|++++|.+..+.-.+..+
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~ 532 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRI 532 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHH
Confidence 666666666666666666666666666665554444433
No 38
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=2.3e-10 Score=123.79 Aligned_cols=114 Identities=14% Similarity=0.168 Sum_probs=103.6
Q ss_pred HHhCCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010717 368 ELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKV 447 (503)
Q Consensus 368 eLEaL~~~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekA 447 (503)
.+++....+....+++..-+|..|+-.++|+.|+++|+.||.. .|.+..+|+.+|..+..-.+.++||+.|++|
T Consensus 417 fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rA 490 (579)
T KOG1125|consen 417 FLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV------KPNDYLLWNRLGATLANGNRSEEAISAYNRA 490 (579)
T ss_pred HHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc------CCchHHHHHHhhHHhcCCcccHHHHHHHHHH
Confidence 3444444444446788889999999999999999999999987 7888999999999999999999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 010717 448 LEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPS 487 (503)
Q Consensus 448 LkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPe 487 (503)
|+|.|..++++|++|.+|+.+|.|+||+.+|.+||.+.+.
T Consensus 491 LqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 491 LQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999886
No 39
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.04 E-value=6.7e-09 Score=104.34 Aligned_cols=117 Identities=13% Similarity=0.056 Sum_probs=101.0
Q ss_pred HHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HH
Q 010717 381 GAAAKNKGVDN-QKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN---VS 456 (503)
Q Consensus 381 A~alk~lGn~~-fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~---~k 456 (503)
....+..+..+ ++.++|++|++.|++.++..|+ .+....+++.+|.+|+.+++|++|+..|+++++..|++ ..
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~---s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD---STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 34566777765 6789999999999999987443 44446789999999999999999999999999998874 77
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717 457 VLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK 500 (503)
Q Consensus 457 AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk 500 (503)
+++.+|.+|..++++++|++.|+++++..|+...+.....+|..
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL~~ 262 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRLNA 262 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHHhc
Confidence 99999999999999999999999999999999988887777643
No 40
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.03 E-value=2.1e-09 Score=121.40 Aligned_cols=144 Identities=12% Similarity=0.128 Sum_probs=118.2
Q ss_pred cccccc-ccccCCCCCCCcccHHHhCCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010717 347 EVDDWG-YSDFGGGTDDGGTTTELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLS 425 (503)
Q Consensus 347 ev~DW~-Vd~f~ag~d~eaae~eLEaL~~~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~ays 425 (503)
.+.||. |-.+. +...++.....+.....+. .+..+..+|..+.+.+++++|+++|++++++ +|....++.
T Consensus 17 ~~~d~~~ia~~~-g~~~~A~~~~~~~~~~~~~--~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~ 87 (765)
T PRK10049 17 QIADWLQIALWA-GQDAEVITVYNRYRVHMQL--PARGYAAVAVAYRNLKQWQNSLTLWQKALSL------EPQNDDYQR 87 (765)
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHH
Confidence 488994 44444 3233333333333222232 4667899999999999999999999999998 566678899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717 426 TRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK 500 (503)
Q Consensus 426 NrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk 500 (503)
.++.++++.+++++|+..++++++++|++.. ++.+|.+|...+++++|+..|+++++++|++.++...+..+..
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR 161 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 9999999999999999999999999999999998877766543
No 41
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=6.9e-10 Score=110.28 Aligned_cols=116 Identities=17% Similarity=0.209 Sum_probs=102.5
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
.+..++..|+.+|..++|..||..|.+||.+ .|.-+..|.|+++||+++.+++.+.++|.++++++|+.++++|
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~ 82 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICI------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHY 82 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhc------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHH
Confidence 5677899999999999999999999999998 5667789999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHhh
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLKIDPS-----NRIARSTIHRLTKM 501 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALkLDPe-----n~eAk~~La~Lqkl 501 (503)
-+|.+++..+.|++|+..|++++.+.-+ -..+..+|..++++
T Consensus 83 flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~ 129 (284)
T KOG4642|consen 83 FLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKK 129 (284)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhC
Confidence 9999999999999999999999766422 24556666665543
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.02 E-value=1e-09 Score=120.21 Aligned_cols=117 Identities=16% Similarity=0.096 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
+..+|+-+|.+|+++++|+.|.-.|++|+++ .|....+.+.++..+.++|+.++||..+++|+.++|.++-..|
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcC------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence 4667777888888888888888888888877 5566677777788888888888888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL 502 (503)
.++.+|+.+++|++|+..|+++.++.|++..+...+.++.+.+
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~ 604 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRL 604 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888777777777766543
No 43
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.01 E-value=3.6e-09 Score=96.19 Aligned_cols=92 Identities=15% Similarity=0.086 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010717 401 IKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRT 480 (503)
Q Consensus 401 Ik~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~Lqk 480 (503)
..+|++|+++ +|. .+.+++.++.++|++++|+.+|++++.++|.+..+++.+|.++..+|++++|++.|++
T Consensus 13 ~~~~~~al~~------~p~---~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~ 83 (144)
T PRK15359 13 EDILKQLLSV------DPE---TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGH 83 (144)
T ss_pred HHHHHHHHHc------CHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4678899988 343 2667899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHhh
Q 010717 481 VLKIDPSNRIARSTIHRLTKM 501 (503)
Q Consensus 481 ALkLDPen~eAk~~La~Lqkl 501 (503)
+++++|++..+...+..+...
T Consensus 84 Al~l~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 84 ALMLDASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHhcCCCCcHHHHHHHHHHHH
Confidence 999999999998888876554
No 44
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.01 E-value=5.5e-09 Score=100.19 Aligned_cols=101 Identities=12% Similarity=0.040 Sum_probs=91.5
Q ss_pred hCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHcCC--
Q 010717 394 AGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLY-ESMEK-- 470 (503)
Q Consensus 394 qGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay-~~LGd-- 470 (503)
.++.++++..|+++++. +|.+.+.|..+|.+|+.++++++|+..|+++++++|++..+++.+|.++ ...++
T Consensus 52 ~~~~~~~i~~l~~~L~~------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~ 125 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHM 125 (198)
T ss_pred chhHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCC
Confidence 56778899999999988 6778999999999999999999999999999999999999999999986 67787
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717 471 YKLGAEDLRTVLKIDPSNRIARSTIHRLTK 500 (503)
Q Consensus 471 yeeAle~LqkALkLDPen~eAk~~La~Lqk 500 (503)
+++|++.|+++++++|++..+...+..+..
T Consensus 126 ~~~A~~~l~~al~~dP~~~~al~~LA~~~~ 155 (198)
T PRK10370 126 TPQTREMIDKALALDANEVTALMLLASDAF 155 (198)
T ss_pred cHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence 599999999999999999998888776543
No 45
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.99 E-value=8.2e-09 Score=120.01 Aligned_cols=109 Identities=16% Similarity=0.091 Sum_probs=95.8
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 010717 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLY 465 (503)
Q Consensus 386 ~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay 465 (503)
.++..+++.|++++|+..|++|+++ +|+ ..+|.+++.++.++|++++|++.|+++++++|+++.+++++|.+|
T Consensus 581 ~La~~l~~~Gr~~eAl~~~~~AL~l------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL 653 (987)
T PRK09782 581 WLHAQRYIPGQPELALNDLTRSLNI------APS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYAL 653 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHh------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3444445558888888888888887 454 688999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717 466 ESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM 501 (503)
Q Consensus 466 ~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl 501 (503)
..+|++++|++.|+++++++|++.++...+..+...
T Consensus 654 ~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 654 WDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR 689 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998888777554
No 46
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.99 E-value=2.6e-09 Score=110.77 Aligned_cols=115 Identities=24% Similarity=0.274 Sum_probs=104.6
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717 379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVL 458 (503)
Q Consensus 379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAl 458 (503)
..++.++.+|..++.+++|.+|+..|..|+++ +|....+++.|+.+|+.+|+-..|+.++.++|++.|+..-|.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~AR 109 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEG------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAAR 109 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHH
Confidence 45778899999999999999999999999998 678889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHH
Q 010717 459 VQRALLYESMEKYKLGAEDLRTVLKIDPSN---RIARSTIHRLT 499 (503)
Q Consensus 459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen---~eAk~~La~Lq 499 (503)
..+|.+++++|++++|..+|+.+|+.+|.+ .+++..|..++
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~ 153 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQ 153 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHH
Confidence 999999999999999999999999999954 45555554443
No 47
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.98 E-value=5.9e-09 Score=116.11 Aligned_cols=107 Identities=12% Similarity=0.134 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 010717 380 TGAAAKNKGVDNQKAGQYAD----AIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNV 455 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~e----AIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~ 455 (503)
....+..+|..++..|++++ |++.|++++++ +|....++.+++.+++++|++++|+..++++++++|++.
T Consensus 245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l------~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~ 318 (656)
T PRK15174 245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF------NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLP 318 (656)
T ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 35566667777777777764 67777777766 445566777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 010717 456 SVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIAR 492 (503)
Q Consensus 456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk 492 (503)
.+++.++.+|..+|++++|++.|+++++++|++....
T Consensus 319 ~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~ 355 (656)
T PRK15174 319 YVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWN 355 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence 7777777777777777777777777777777665433
No 48
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.97 E-value=4.7e-09 Score=123.37 Aligned_cols=119 Identities=16% Similarity=0.148 Sum_probs=101.4
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChh--------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMAT--------MMEVLSTRASCYKEVGEYKKAVADCSKVLEQD 451 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd--------~A~aysNrAlcylrLGdyeeALedaekALkLd 451 (503)
...++..+|.++++.+++++|+++|++++++.+....... ...++..++.++++.|++++|++.|+++++++
T Consensus 302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~ 381 (1157)
T PRK11447 302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD 381 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4778999999999999999999999999988553321100 11233466889999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717 452 DTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL 498 (503)
Q Consensus 452 Pd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L 498 (503)
|++..+++.+|.+|..+|++++|+++|+++++++|++..+...+..+
T Consensus 382 P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l 428 (1157)
T PRK11447 382 NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANL 428 (1157)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999998877666554
No 49
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.97 E-value=2.2e-09 Score=83.57 Aligned_cols=64 Identities=22% Similarity=0.318 Sum_probs=56.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 010717 426 TRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNR 489 (503)
Q Consensus 426 NrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~ 489 (503)
.+|..+++.|+|++|++.|+++++.+|++..+++.+|.++..+|++++|++.|+++++++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5788899999999999999999999999999999999999999999999999999999999874
No 50
>PRK15331 chaperone protein SicA; Provisional
Probab=98.97 E-value=7.8e-09 Score=97.71 Aligned_cols=112 Identities=9% Similarity=-0.019 Sum_probs=100.3
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717 379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVL 458 (503)
Q Consensus 379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAl 458 (503)
...+.++..|..+|.+|+|++|..+|+-...+ ++.+.+.+..+|.|+..+++|++|+..|..|..++++++...
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~ 108 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV 108 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence 36778899999999999999999999998887 556678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010717 459 VQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHR 497 (503)
Q Consensus 459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~ 497 (503)
|+.|.||+.+++.++|+.+|+.++. .|++.+++.....
T Consensus 109 f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~ 146 (165)
T PRK15331 109 FFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALV 146 (165)
T ss_pred chHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHH
Confidence 9999999999999999999999998 5777665544333
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.97 E-value=3.5e-09 Score=104.31 Aligned_cols=116 Identities=15% Similarity=0.127 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
....+...|.++.+.|++++|+++|++|+++ .|++..++..++.+++..|+++++.+.++...+..|.++..+.
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~ 218 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALEL------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWD 218 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHH
Confidence 5677888999999999999999999999998 5566788888888999999999988888888888788888889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM 501 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl 501 (503)
.+|.+|..+|++++|+.+|+++++.+|+++.+...+..+...
T Consensus 219 ~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~ 260 (280)
T PF13429_consen 219 ALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQ 260 (280)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-
T ss_pred HHHHHhcccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999988887654
No 52
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.96 E-value=9.2e-09 Score=114.60 Aligned_cols=111 Identities=16% Similarity=0.094 Sum_probs=101.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCCHHHHH
Q 010717 384 AKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKK----AVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 384 lk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyee----ALedaekALkLdPd~~kAly 459 (503)
+..++..+...+++++|++.|.+++++ .|.+..++.++|.+|+++|++++ |+..|+++++++|++..+++
T Consensus 215 ~~~l~~~l~~~g~~~eA~~~~~~al~~------~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~ 288 (656)
T PRK15174 215 AGLAVDTLCAVGKYQEAIQTGESALAR------GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVT 288 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 345678889999999999999999987 56678899999999999999986 89999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK 500 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk 500 (503)
.+|.+|..+|++++|+..|+++++++|++..+...+..+..
T Consensus 289 ~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~ 329 (656)
T PRK15174 289 LYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALR 329 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999988887776654
No 53
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.95 E-value=1.9e-08 Score=108.76 Aligned_cols=114 Identities=18% Similarity=0.147 Sum_probs=99.0
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717 379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVL 458 (503)
Q Consensus 379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAl 458 (503)
..+..+..+|..++..+++++|++.|++++++ +|....++..++.+++..+++++|++.++++++.+|.+..++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 196 (899)
T TIGR02917 123 GAAELLALRGLAYLGLGQLELAQKSYEQALAI------DPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDAL 196 (899)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHH
Confidence 45677888999999999999999999999987 445567888899999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717 459 VQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL 498 (503)
Q Consensus 459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L 498 (503)
+.++.++..+|++++|++.|+++++++|.+..+...+..+
T Consensus 197 ~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 236 (899)
T TIGR02917 197 LLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATI 236 (899)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999887766555544
No 54
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.94 E-value=1.3e-08 Score=94.17 Aligned_cols=116 Identities=17% Similarity=0.212 Sum_probs=101.4
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH--
Q 010717 379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVS-- 456 (503)
Q Consensus 379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~k-- 456 (503)
..+..++..|...++.++|.+|++.|+......| -.+.-..+...++.+|++.++|++|+..+++-|+|+|.+++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP---~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd 84 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYP---FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD 84 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC---CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc
Confidence 3577899999999999999999999998876533 34555678889999999999999999999999999998854
Q ss_pred -HHHHHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010717 457 -VLVQRALLYESMEK---------------YKLGAEDLRTVLKIDPSNRIARSTIHR 497 (503)
Q Consensus 457 -AlyrlA~Ay~~LGd---------------yeeAle~LqkALkLDPen~eAk~~La~ 497 (503)
++|.+|.+++.+.+ ..+|+..|+++++..|++..+.....+
T Consensus 85 Ya~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~~R 141 (142)
T PF13512_consen 85 YAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADARKR 141 (142)
T ss_pred HHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHHHhc
Confidence 89999999999987 999999999999999999877665543
No 55
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.94 E-value=4.1e-09 Score=104.27 Aligned_cols=131 Identities=18% Similarity=0.106 Sum_probs=102.5
Q ss_pred CCcccHHHhCCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHH
Q 010717 362 DGGTTTELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAV 441 (503)
Q Consensus 362 ~eaae~eLEaL~~~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeAL 441 (503)
...++..+|.....++. ...++..++..|.+.|+.+.|-+.|++|+.+ +|...++++|.|.-++.+|+|++|.
T Consensus 51 ~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl------~p~~GdVLNNYG~FLC~qg~~~eA~ 123 (250)
T COG3063 51 YAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSL------APNNGDVLNNYGAFLCAQGRPEEAM 123 (250)
T ss_pred HHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhc------CCCccchhhhhhHHHHhCCChHHHH
Confidence 33444445443333332 5777888888888999999999999999888 5556678888888888888999999
Q ss_pred HHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717 442 ADCSKVLEQ--DDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT 499 (503)
Q Consensus 442 edaekALkL--dPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq 499 (503)
+.|++|+.. .+.....+-++|.|.++.|+.+.|.+.|+++|+++|+++.....+.++.
T Consensus 124 q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~ 183 (250)
T COG3063 124 QQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLH 183 (250)
T ss_pred HHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHH
Confidence 999888864 2455778889999999999999999999999999999887777776654
No 56
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.93 E-value=1.1e-08 Score=89.07 Aligned_cols=94 Identities=14% Similarity=0.073 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010717 402 KWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTV 481 (503)
Q Consensus 402 k~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkA 481 (503)
+.|++++++ +|....++..++.+++..+++++|++.+++++.++|.+..+++++|.+|..++++++|++.|+++
T Consensus 4 ~~~~~~l~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 77 (135)
T TIGR02552 4 ATLKDLLGL------DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALA 77 (135)
T ss_pred hhHHHHHcC------ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788877 55667889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHhh
Q 010717 482 LKIDPSNRIARSTIHRLTKM 501 (503)
Q Consensus 482 LkLDPen~eAk~~La~Lqkl 501 (503)
++++|++......+..+...
T Consensus 78 ~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 78 AALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HhcCCCChHHHHHHHHHHHH
Confidence 99999999888887776543
No 57
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.91 E-value=1.3e-08 Score=114.45 Aligned_cols=104 Identities=11% Similarity=-0.057 Sum_probs=98.6
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
...++.+++.++.+++++++|+..+++++.. +|+.+.+++.+|.|+.++|+|++|++.|+++++.+|+..++++
T Consensus 119 ~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~ 192 (694)
T PRK15179 119 SSEAFILMLRGVKRQQGIEAGRAEIELYFSG------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYV 192 (694)
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHhhc------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHH
Confidence 6888999999999999999999999999988 7788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLKIDPSNR 489 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~ 489 (503)
.+|.+|+.+|+.++|...|++++++.-.-.
T Consensus 193 ~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 193 GWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 999999999999999999999999865543
No 58
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.91 E-value=1.1e-08 Score=101.30 Aligned_cols=133 Identities=17% Similarity=0.132 Sum_probs=116.6
Q ss_pred cccHHHhCCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Q 010717 364 GTTTELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVAD 443 (503)
Q Consensus 364 aae~eLEaL~~~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALed 443 (503)
+.+....++...+. ..+++.+.|-.++.+|+|++|..+|++|++. +.-+..+..|.|++.|.++.|+++.|.++
T Consensus 88 A~e~YrkAlsl~p~--~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~----P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~ 161 (250)
T COG3063 88 ADESYRKALSLAPN--NGDVLNNYGAFLCAQGRPEEAMQQFERALAD----PAYGEPSDTLENLGLCALKAGQFDQAEEY 161 (250)
T ss_pred HHHHHHHHHhcCCC--ccchhhhhhHHHHhCCChHHHHHHHHHHHhC----CCCCCcchhhhhhHHHHhhcCCchhHHHH
Confidence 33444455555554 5889999999999999999999999999954 45566788999999999999999999999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717 444 CSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502 (503)
Q Consensus 444 aekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL 502 (503)
++++|+++|+.+.+...++..++..++|..|...+++....-+...+......++.+.+
T Consensus 162 l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~ 220 (250)
T COG3063 162 LKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRL 220 (250)
T ss_pred HHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999888888888888887765
No 59
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.89 E-value=3.7e-08 Score=111.41 Aligned_cols=113 Identities=10% Similarity=-0.044 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
....+..++..+...+++++|++.|++++++ .|....++..++.++...|++++|++.++++++++|++..+++
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~------~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~ 431 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYN------APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEV 431 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHH
Confidence 3556778999999999999999999999988 5666889999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL 498 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L 498 (503)
.+|.+++.++++++|++.++++++++|+++.++..-+..
T Consensus 432 ~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 432 EQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999876655443
No 60
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.89 E-value=3.4e-08 Score=106.84 Aligned_cols=114 Identities=18% Similarity=0.092 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
....+..+|..+.+.|++++|+++|++++++ .|.+..++.+++.++.+.++ .+|+..+++++++.|+++..+.
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~ 841 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKK------APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILD 841 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHH
Confidence 3566777888888888888888888888876 45567788888888888888 7788888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK 500 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk 500 (503)
.+|.+|..+|++++|++.|+++++++|.+.++...+..+..
T Consensus 842 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 882 (899)
T TIGR02917 842 TLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALL 882 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 88999999999999999999999999988888777666543
No 61
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.88 E-value=1.8e-08 Score=118.51 Aligned_cols=117 Identities=14% Similarity=0.085 Sum_probs=96.4
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCh------------------------------------hhHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMA------------------------------------TMMEV 423 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddp------------------------------------d~A~a 423 (503)
...++..+|.+++.+|++++|+++|++++++.+...... .....
T Consensus 384 ~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~ 463 (1157)
T PRK11447 384 DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDR 463 (1157)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhH
Confidence 466788899999999999999999999998744221000 00112
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010717 424 LSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIH 496 (503)
Q Consensus 424 ysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La 496 (503)
+..++.++...|++++|++.|+++++++|+++.+++.+|.+|..+|++++|++.|+++++++|++.++...+.
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~a 536 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYG 536 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3446777788999999999999999999999999999999999999999999999999999999987765443
No 62
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.88 E-value=5.1e-08 Score=93.05 Aligned_cols=118 Identities=14% Similarity=0.077 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCC
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEV--------GEYKKAVADCSKVLEQDD 452 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrL--------GdyeeALedaekALkLdP 452 (503)
..+++.+|..+++.+++++|++.|++++++.|+ .+....+++.++.|++++ +++++|++.++++++.+|
T Consensus 70 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 146 (235)
T TIGR03302 70 EQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN---HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP 146 (235)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC
Confidence 457889999999999999999999999988543 334456788999999987 889999999999999999
Q ss_pred CCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHhh
Q 010717 453 TNVSVL-----------------VQRALLYESMEKYKLGAEDLRTVLKIDPSN---RIARSTIHRLTKM 501 (503)
Q Consensus 453 d~~kAl-----------------yrlA~Ay~~LGdyeeAle~LqkALkLDPen---~eAk~~La~Lqkl 501 (503)
++..++ +.+|.+|+..|++++|+..|+++++..|++ .++...+.++...
T Consensus 147 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~ 215 (235)
T TIGR03302 147 NSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLK 215 (235)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHH
Confidence 986432 467889999999999999999999998875 4566666665543
No 63
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.5e-08 Score=110.03 Aligned_cols=119 Identities=14% Similarity=0.233 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDM-ATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~dd-pd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
.-.++.+|.++|..+.|.+|+.+|+++++.++...++ ..-..++.|+|.++.++++|++||.+++++|.+.|.++..|-
T Consensus 414 plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~a 493 (611)
T KOG1173|consen 414 PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHA 493 (611)
T ss_pred chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHH
Confidence 5578889999999999999999999999776654322 224567899999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT 499 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq 499 (503)
-+|.+|..+|+++.|++.|.++|.++|++..+...|..+.
T Consensus 494 sig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 494 SIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 9999999999999999999999999999988877777554
No 64
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.86 E-value=1.3e-08 Score=80.52 Aligned_cols=71 Identities=25% Similarity=0.369 Sum_probs=63.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717 428 ASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL 498 (503)
Q Consensus 428 AlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L 498 (503)
..+|++.+++++|++.++++++++|+++.+++.+|.+|..+|++++|+++|++++++.|++..+......+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 46788999999999999999999999999999999999999999999999999999999988877766554
No 65
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.85 E-value=8.2e-08 Score=91.92 Aligned_cols=120 Identities=18% Similarity=0.239 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN---VS 456 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~---~k 456 (503)
.+..++..|..++..|+|.+|++.|++.+...|. .+....+...++.++++.++|++|+..+++.++..|++ ..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~---s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~ 80 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN---SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADY 80 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhh
Confidence 5778999999999999999999999999987554 45667888999999999999999999999999999886 45
Q ss_pred HHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHhhh
Q 010717 457 VLVQRALLYESME-----------KYKLGAEDLRTVLKIDPSNR---IARSTIHRLTKMV 502 (503)
Q Consensus 457 AlyrlA~Ay~~LG-----------dyeeAle~LqkALkLDPen~---eAk~~La~LqklL 502 (503)
++|.+|.+++.+. ...+|+..|++.++..|+.. +++..+..|.+.+
T Consensus 81 A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l 140 (203)
T PF13525_consen 81 ALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL 140 (203)
T ss_dssp HHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH
Confidence 8999999987653 34589999999999999984 5555566665543
No 66
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.85 E-value=7.1e-08 Score=97.81 Aligned_cols=107 Identities=20% Similarity=0.065 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ 460 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr 460 (503)
...+..++..+.+.+++++|++.|+++++..+... ......++..++.++++.+++++|++.|+++++++|+...+++.
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 219 (389)
T PRK11788 141 EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSL-RVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASIL 219 (389)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHH
Confidence 34455555555555555555555555555422110 01122334455555555555555555555555555555555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717 461 RALLYESMEKYKLGAEDLRTVLKIDPSN 488 (503)
Q Consensus 461 lA~Ay~~LGdyeeAle~LqkALkLDPen 488 (503)
++.+|..+|++++|++.|+++++++|.+
T Consensus 220 la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 220 LGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 5555555555555555555555555543
No 67
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.84 E-value=6.5e-08 Score=98.07 Aligned_cols=111 Identities=17% Similarity=0.109 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-----H
Q 010717 382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNV-----S 456 (503)
Q Consensus 382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~-----k 456 (503)
..+..+|..+++.|++++|+++|++++++ .+....++..++.++.+.|++++|++.++++++..|... .
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 181 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDE------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAH 181 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcC------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 34555666666666666666666666654 233455666666666667777777777766666665432 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717 457 VLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL 498 (503)
Q Consensus 457 AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L 498 (503)
.++.++.++...+++++|++.|+++++++|++..+...+.++
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 223 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDL 223 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHH
Confidence 344566666677777777777777777777666555555544
No 68
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=1.2e-08 Score=109.33 Aligned_cols=112 Identities=20% Similarity=0.221 Sum_probs=98.7
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717 379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVL 458 (503)
Q Consensus 379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAl 458 (503)
..+.++...|..+|-.|++..|.+.+.++|+++ +....+|..|+.+|+.+.+-++-.++|++|..+||+++.+|
T Consensus 324 ~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~------~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvY 397 (606)
T KOG0547|consen 324 YMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD------PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVY 397 (606)
T ss_pred HHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC------cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchh
Confidence 347788888999999999999999999999994 44456688999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010717 459 VQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIH 496 (503)
Q Consensus 459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La 496 (503)
|.||++++.+++|++|+++|++++.|+|++......+.
T Consensus 398 yHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~ 435 (606)
T KOG0547|consen 398 YHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLC 435 (606)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHH
Confidence 99999999999999999999999999999876655443
No 69
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=3.5e-08 Score=100.42 Aligned_cols=111 Identities=22% Similarity=0.128 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGE---YKKAVADCSKVLEQDDTNVS 456 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGd---yeeALedaekALkLdPd~~k 456 (503)
+++-|..+|.+|+..+++..|+..|.+|+++ .++..+++..++.+++...+ -.++...+++++++||.++.
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ir 228 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIR 228 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHH
Confidence 5888999999999999999999999999999 55667888888888877544 58899999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010717 457 VLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIH 496 (503)
Q Consensus 457 AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La 496 (503)
+++.+|..++..++|++|+..|+..|++.|.+..-...+.
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 9999999999999999999999999999998754433333
No 70
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=4.9e-08 Score=104.25 Aligned_cols=117 Identities=14% Similarity=0.057 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
...+|..+|.+|+..++...|++.|+.|+++ .|.+..+|+.+|..|.-++-..=|+-+|++|+++.|.+...|.
T Consensus 363 ~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~ 436 (559)
T KOG1155|consen 363 YLSAWTLMGHEYVEMKNTHAAIESYRRAVDI------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWV 436 (559)
T ss_pred hhHHHHHhhHHHHHhcccHHHHHHHHHHHhc------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHH
Confidence 5678888999999999999999999999998 5677889999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL 502 (503)
.+|.||.++.+.++|+.+|.+++.....+..+...|+.+.+.+
T Consensus 437 aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l 479 (559)
T KOG1155|consen 437 ALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEEL 479 (559)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 9999999999999999999999998887777777777766543
No 71
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.82 E-value=8.2e-08 Score=96.18 Aligned_cols=114 Identities=13% Similarity=0.136 Sum_probs=105.3
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
....+..+|...++.|+|.+|+..+.+|..+ .|.+.++|..+|.||.++|++++|...|.+++++.|..+.++-
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~n 172 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARL------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIAN 172 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHhcc------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhh
Confidence 4556777999999999999999999999988 6778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT 499 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq 499 (503)
++|..|+..||+++|...++++...-+.+..+...|..+.
T Consensus 173 Nlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~ 212 (257)
T COG5010 173 NLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVV 212 (257)
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 9999999999999999999999988888888887777653
No 72
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.80 E-value=1.6e-07 Score=93.10 Aligned_cols=120 Identities=14% Similarity=0.093 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN---VS 456 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~---~k 456 (503)
.+..++..|..++..|+|++|++.|++++...| ..+....+...++.+|+++++|++|+..+++.++++|++ ..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP---~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYP---FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence 466788999999999999999999999998744 345556677899999999999999999999999999877 45
Q ss_pred HHHHHHHHHHHcCC------------------HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHhhh
Q 010717 457 VLVQRALLYESMEK------------------YKLGAEDLRTVLKIDPSNR---IARSTIHRLTKMV 502 (503)
Q Consensus 457 AlyrlA~Ay~~LGd------------------yeeAle~LqkALkLDPen~---eAk~~La~LqklL 502 (503)
++|.+|.+++.+++ ..+|++.|++.++..|+.. +++..|..|+..+
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~l 174 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRL 174 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH
Confidence 89999999766541 3578999999999999984 4555555555443
No 73
>PLN02789 farnesyltranstransferase
Probab=98.77 E-value=1.6e-07 Score=96.96 Aligned_cols=113 Identities=12% Similarity=0.059 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCCCHH
Q 010717 380 TGAAAKNKGVDNQKAG-QYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEY--KKAVADCSKVLEQDDTNVS 456 (503)
Q Consensus 380 ~A~alk~lGn~~fkqG-DY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdy--eeALedaekALkLdPd~~k 456 (503)
...++..++.++.+.+ ++++|+++++++++. +|....+|..|+.++.++++. ++++++++++|+++|++..
T Consensus 70 ~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~------npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~ 143 (320)
T PLN02789 70 NYTVWHFRRLCLEALDADLEEELDFAEDVAED------NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYH 143 (320)
T ss_pred hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH------CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHH
Confidence 5778888999999988 689999999999988 566788999999999999874 7889999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717 457 VLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL 498 (503)
Q Consensus 457 AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L 498 (503)
+|+.++.++..+++|++|++++.++|++||.|..+......+
T Consensus 144 AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~v 185 (320)
T PLN02789 144 AWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFV 185 (320)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHH
Confidence 999999999999999999999999999999997765555443
No 74
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.76 E-value=2.2e-08 Score=78.16 Aligned_cols=68 Identities=24% Similarity=0.321 Sum_probs=57.5
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717 431 YKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL 498 (503)
Q Consensus 431 ylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L 498 (503)
+++.|+|++|++.|++++..+|++..+++.++.||+..|++++|.+.|+++++.+|++..+...+.+|
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 35788899999999999999999999999999999999999999999999999999888777776654
No 75
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.76 E-value=2.6e-08 Score=77.51 Aligned_cols=65 Identities=22% Similarity=0.170 Sum_probs=58.9
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 010717 385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNV 455 (503)
Q Consensus 385 k~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~ 455 (503)
+.+|..+++.|+|++|++.|+++++. .|....++..+|.|++++|++++|++.|+++++++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQ------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCC------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35799999999999999999999977 677899999999999999999999999999999999874
No 76
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.76 E-value=5.5e-08 Score=78.18 Aligned_cols=72 Identities=25% Similarity=0.395 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDM-ATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD 451 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~dd-pd~A~aysNrAlcylrLGdyeeALedaekALkLd 451 (503)
.+.++.++|.+++..++|++|+++|++|+++....+++ +..+.++.++|.||..+|++++|++++++|+++.
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 56788899999999999999999999999885555543 3458889999999999999999999999998763
No 77
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.72 E-value=2.7e-07 Score=93.07 Aligned_cols=116 Identities=16% Similarity=0.143 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHH
Q 010717 382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN---VSVL 458 (503)
Q Consensus 382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~---~kAl 458 (503)
..+++.+..+++.|||.+|...|.+-|.. .++......+++-||.|++.+|+|++|...|..+++-.|++ ++++
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~---YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKK---YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 34899999999999999999999988865 44456667888889999999999999999999999988765 6789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717 459 VQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK 500 (503)
Q Consensus 459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk 500 (503)
+.+|.|+..+++.++||..|+++++..|+...++.....+++
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~~~ 260 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVALKA 260 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHhc
Confidence 999999999999999999999999999999888877776654
No 78
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.69 E-value=2.2e-07 Score=83.88 Aligned_cols=98 Identities=16% Similarity=0.112 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ 460 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr 460 (503)
..+.+.++..++..|+|++|++.|+++++.. ++......+...++.|++.+++|++|+..+++ +.-.+-.+.++..
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~ 123 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANA---PDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAEL 123 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHH
Confidence 4567779999999999999999999999752 33344566788899999999999999999977 3333445668888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 010717 461 RALLYESMEKYKLGAEDLRTVL 482 (503)
Q Consensus 461 lA~Ay~~LGdyeeAle~LqkAL 482 (503)
+|.+|...|++++|+..|+++|
T Consensus 124 ~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 124 LGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999999999999999875
No 79
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.68 E-value=2e-07 Score=70.75 Aligned_cols=76 Identities=28% Similarity=0.387 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717 423 VLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL 498 (503)
Q Consensus 423 aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L 498 (503)
++.+++.+++..+++++|+..+++++++.|.+..+++.++.+|...+++++|++.|++++++.|.+..+...+..+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 77 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Confidence 5788999999999999999999999999999999999999999999999999999999999999987666555544
No 80
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.4e-07 Score=100.90 Aligned_cols=115 Identities=10% Similarity=0.091 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 010717 382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQR 461 (503)
Q Consensus 382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrl 461 (503)
+...-+|+-|-.+++.+.|+.+|++|++| +|....+|..+|.-|+++++-..|++.|++|++++|.+-++||-+
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkL------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGL 404 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKL------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGL 404 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhc------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhh
Confidence 34455677788889999999999999999 667889999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717 462 ALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502 (503)
Q Consensus 462 A~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL 502 (503)
|++|.-++-..=|+-+|++++++-|.+..+...|.+|...+
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl 445 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKL 445 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998765
No 81
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.67 E-value=4e-07 Score=81.87 Aligned_cols=99 Identities=23% Similarity=0.142 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHH
Q 010717 382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT---NVSVL 458 (503)
Q Consensus 382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd---~~kAl 458 (503)
.+++..+..+-..|+.++|+.+|++|++.. ...+....++..++.++..+|++++|+..+++++...|+ +..+.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g---L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~ 78 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAG---LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALR 78 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHH
Confidence 367889999999999999999999999852 224556789999999999999999999999999999888 78888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717 459 VQRALLYESMEKYKLGAEDLRTVLK 483 (503)
Q Consensus 459 yrlA~Ay~~LGdyeeAle~LqkALk 483 (503)
+.++.++..+|++++|++.+..++.
T Consensus 79 ~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 79 VFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999999988875
No 82
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.67 E-value=3.5e-07 Score=84.62 Aligned_cols=101 Identities=21% Similarity=0.310 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNV---- 455 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~---- 455 (503)
....+-.+|..+...++.+.|++.|.++|.++ |..+.+|+||+..+..+++.++|+.++++++++.-...
T Consensus 42 ~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtac 115 (175)
T KOG4555|consen 42 ASRELELKAIALAEAGDLDGALELFGQALCLA------PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTAC 115 (175)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhc------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHH
Confidence 34456677888999999999999999999994 45679999999999999999999999999999974433
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717 456 SVLVQRALLYESMEKYKLGAEDLRTVLKIDP 486 (503)
Q Consensus 456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP 486 (503)
.+++.+|.+|..+|+-++|..+|+.+-++-.
T Consensus 116 qa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 116 QAFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 4788899999999999999999999887754
No 83
>PLN02789 farnesyltranstransferase
Probab=98.65 E-value=5.4e-07 Score=93.03 Aligned_cols=108 Identities=17% Similarity=0.146 Sum_probs=94.8
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 010717 387 KGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVG-EYKKAVADCSKVLEQDDTNVSVLVQRALLY 465 (503)
Q Consensus 387 lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLG-dyeeALedaekALkLdPd~~kAlyrlA~Ay 465 (503)
+-.++.+.+++++|++.+.++|++ .|...++|..|+.|+..++ ++++++..++++++.+|++..+|+.++.++
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~l------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l 116 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRL------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHH
Confidence 334466788999999999999999 6788999999999999998 689999999999999999999999999999
Q ss_pred HHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717 466 ESMEKY--KLGAEDLRTVLKIDPSNRIARSTIHRLTK 500 (503)
Q Consensus 466 ~~LGdy--eeAle~LqkALkLDPen~eAk~~La~Lqk 500 (503)
..+++. +++++.++++|+++|+|-.+......+..
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~ 153 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLR 153 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 999874 78899999999999999777665554443
No 84
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.64 E-value=7.8e-08 Score=102.61 Aligned_cols=116 Identities=24% Similarity=0.165 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
.+.++.++|++.|..|||+.|.+.|++||.- +....++++|+++.+..+|++++|+.+|-+.-.+--+++++++
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~n------dasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~ 562 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEALNN------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLV 562 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHHcC------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3456677888899999999999999999954 5667889999999999999999999999888777778999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM 501 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl 501 (503)
.++.+|..+.+..+|+++|..+..+-|.++.+...|.++..+
T Consensus 563 qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydq 604 (840)
T KOG2003|consen 563 QIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQ 604 (840)
T ss_pred HHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999988764
No 85
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.62 E-value=1e-07 Score=99.03 Aligned_cols=97 Identities=13% Similarity=0.125 Sum_probs=83.7
Q ss_pred cHHHhCCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010717 366 TTELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445 (503)
Q Consensus 366 e~eLEaL~~~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedae 445 (503)
....+++...+. .+.++..+|.++++.++|++|+..|++||++ +|....+|+++|.+|+.+|+|++|+.+|+
T Consensus 23 ~~~~~Al~~~P~--~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l------~P~~~~a~~~lg~~~~~lg~~~eA~~~~~ 94 (356)
T PLN03088 23 DLYTQAIDLDPN--NAELYADRAQANIKLGNFTEAVADANKAIEL------DPSLAKAYLRKGTACMKLEEYQTAKAALE 94 (356)
T ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 333344444444 4778999999999999999999999999999 56778999999999999999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCC
Q 010717 446 KVLEQDDTNVSVLVQRALLYESMEK 470 (503)
Q Consensus 446 kALkLdPd~~kAlyrlA~Ay~~LGd 470 (503)
++++++|++..+++.++.|...+.+
T Consensus 95 ~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 95 KGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999888777744
No 86
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.62 E-value=2.2e-07 Score=85.38 Aligned_cols=109 Identities=13% Similarity=0.038 Sum_probs=88.0
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHH
Q 010717 388 GVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN---VSVLVQRALL 464 (503)
Q Consensus 388 Gn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~---~kAlyrlA~A 464 (503)
.+.+|..++|..+...+...+.. ......+.+|++++.++..++++++|+..|++++.+.++. ..+++++|.+
T Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~ 81 (168)
T CHL00033 6 RNDNFIDKTFTIVADILLRILPT----TSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLI 81 (168)
T ss_pred ccccccccccccchhhhhHhccC----CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHH
Confidence 34556667777777777555432 1133467889999999999999999999999999997663 4589999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717 465 YESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK 500 (503)
Q Consensus 465 y~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk 500 (503)
|..++++++|++.|+++++++|........+..+..
T Consensus 82 ~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 82 HTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 999999999999999999999998887766665544
No 87
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.61 E-value=9.3e-08 Score=76.83 Aligned_cols=68 Identities=22% Similarity=0.332 Sum_probs=59.0
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 010717 418 ATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD----D---TNVSVLVQRALLYESMEKYKLGAEDLRTVLKID 485 (503)
Q Consensus 418 pd~A~aysNrAlcylrLGdyeeALedaekALkLd----P---d~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLD 485 (503)
|+.+.+|.++|.+|.++|+|++|+.+|++++++. + ..+.+++++|.+|..+|++++|++.|++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4567899999999999999999999999999762 1 235689999999999999999999999999873
No 88
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.60 E-value=2.3e-07 Score=73.28 Aligned_cols=70 Identities=24% Similarity=0.326 Sum_probs=63.6
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 010717 388 GVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRAL 463 (503)
Q Consensus 388 Gn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~ 463 (503)
..+|++.++|++|++++++++++ +|.+..+|..+|.|++++|++++|++++++++++.|+...+...++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL------DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 46789999999999999999999 66778999999999999999999999999999999999887766554
No 89
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.59 E-value=4.1e-07 Score=87.39 Aligned_cols=98 Identities=16% Similarity=0.198 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 010717 397 YADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGE----------YKKAVADCSKVLEQDDTNVSVLVQRALLYE 466 (503)
Q Consensus 397 Y~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGd----------yeeALedaekALkLdPd~~kAlyrlA~Ay~ 466 (503)
|+.|.+.|+.++.. +|.+++.+++.|.+++++-+ +++|++=+++||.|+|+..++++++|.+|.
T Consensus 7 FE~ark~aea~y~~------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~t 80 (186)
T PF06552_consen 7 FEHARKKAEAAYAK------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYT 80 (186)
T ss_dssp HHHHHHHHHHHHHH-------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 67788888888877 67789999999999888743 567888889999999999999999999998
Q ss_pred HcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717 467 SMEK-----------YKLGAEDLRTVLKIDPSNRIARSTIHRLTK 500 (503)
Q Consensus 467 ~LGd-----------yeeAle~LqkALkLDPen~eAk~~La~Lqk 500 (503)
.++. |++|.++|+++++++|+|...++.|....+
T Consensus 81 s~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 81 SLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK 125 (186)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 8765 899999999999999999998888876654
No 90
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.59 E-value=4.7e-07 Score=97.19 Aligned_cols=114 Identities=19% Similarity=0.112 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ 460 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr 460 (503)
..+.+-.+..++..+++++|++.+...+.. .|++..++..++.++++.++.++|++.+++++.++|...-..++
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~ 379 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA------QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLN 379 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHH
Confidence 344455555555555555555555554433 33344455555555555555555555555555555555555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717 461 RALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK 500 (503)
Q Consensus 461 lA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk 500 (503)
+|.+|+..|++++|+..+++.+.-+|+++.....|.+.+.
T Consensus 380 ~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~ 419 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYA 419 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Confidence 5555555555555555555555555555555555555443
No 91
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.58 E-value=7.4e-07 Score=102.26 Aligned_cols=110 Identities=13% Similarity=0.076 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
.++..+..+.+.+++|+|.+|++.|+++++..| ........+..++...|++++|+.+|++|+.-.+.+...+.
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P------~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ll 106 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGP------LQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLA 106 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCc------cchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHH
Confidence 466788888889999999999999999887733 33212225666666667777777777777733334444444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTI 495 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~L 495 (503)
.+|.+|..+|+|++|++.|+++++++|++.++...+
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gL 142 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGM 142 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 446667777777777777777777777766655544
No 92
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=9.8e-07 Score=94.78 Aligned_cols=121 Identities=14% Similarity=-0.024 Sum_probs=109.6
Q ss_pred CCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 010717 376 PAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNV 455 (503)
Q Consensus 376 ~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~ 455 (503)
.....+..+-..+.++++.+++++|++.|++++.+ +|....+..++|..|++.|++.+|+..++..+..+|+++
T Consensus 335 ~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l------~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp 408 (484)
T COG4783 335 AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL------DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDP 408 (484)
T ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Confidence 34455666677899999999999999999999999 566678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717 456 SVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502 (503)
Q Consensus 456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL 502 (503)
..|..++.+|..+|+..+|.+.+-+.+.+.-.-.++...+.+++++.
T Consensus 409 ~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 409 NGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred hHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999998888888888777654
No 93
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.57 E-value=1.8e-07 Score=72.99 Aligned_cols=68 Identities=28% Similarity=0.295 Sum_probs=60.3
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 010717 391 NQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALL 464 (503)
Q Consensus 391 ~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~A 464 (503)
+++.|+|++|+++|+++++. .|.+..++..++.||++.|++++|++.+++++..+|+++..+..++.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 46889999999999999998 667789999999999999999999999999999999988777766653
No 94
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.53 E-value=2.8e-07 Score=98.81 Aligned_cols=70 Identities=23% Similarity=0.132 Sum_probs=63.4
Q ss_pred CCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 010717 376 PAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMM---EVLSTRASCYKEVGEYKKAVADCSKVLEQD 451 (503)
Q Consensus 376 ~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A---~aysNrAlcylrLGdyeeALedaekALkLd 451 (503)
.....+..+.++|.+|++.++|++|+..|++||++ +|++. .+|+|+|.||..+|++++|++++++||++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 45689999999999999999999999999999999 45555 459999999999999999999999999983
No 95
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.53 E-value=7.6e-07 Score=83.80 Aligned_cols=84 Identities=11% Similarity=-0.038 Sum_probs=78.0
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010717 418 ATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHR 497 (503)
Q Consensus 418 pd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~ 497 (503)
++..+.++.+|..++..|++++|++.|+.+..+||.+...||.+|.|+..+|+|++|++.|.+++.++|++++....+..
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 45567778899999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHhh
Q 010717 498 LTKM 501 (503)
Q Consensus 498 Lqkl 501 (503)
|.-+
T Consensus 112 c~L~ 115 (157)
T PRK15363 112 CYLA 115 (157)
T ss_pred HHHH
Confidence 7644
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.51 E-value=1e-06 Score=88.44 Aligned_cols=101 Identities=17% Similarity=0.058 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNV---- 455 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~---- 455 (503)
....+..+|.++...|++++|++.|++++++ .|.+..++..++.+++++|++++|++.+++++.+.|...
T Consensus 113 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~------~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~ 186 (355)
T cd05804 113 YWYLLGMLAFGLEEAGQYDRAEEAARRALEL------NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRG 186 (355)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhH
Confidence 4556677899999999999999999999998 455678899999999999999999999999999986432
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717 456 SVLVQRALLYESMEKYKLGAEDLRTVLKIDP 486 (503)
Q Consensus 456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP 486 (503)
..++.++.+|..+|++++|++.|++++...|
T Consensus 187 ~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 187 HNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 3566899999999999999999999987776
No 97
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.50 E-value=9.3e-08 Score=101.22 Aligned_cols=111 Identities=16% Similarity=0.167 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CC
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD------DT 453 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd------Pd 453 (503)
...++-++|+.||..|+|++||..-++-|++.++.++....-.++.|++.||+-+|+++.|+++|++.+.|. ..
T Consensus 194 qGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~v 273 (639)
T KOG1130|consen 194 QGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTV 273 (639)
T ss_pred hcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhH
Confidence 456788899999999999999999999999999888888888999999999999999999999999876553 23
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 010717 454 NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRI 490 (503)
Q Consensus 454 ~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~e 490 (503)
.++.+|.+|..|..+++|++|++++++-|+|..+-..
T Consensus 274 EAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~D 310 (639)
T KOG1130|consen 274 EAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELED 310 (639)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999988654433
No 98
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.50 E-value=2.7e-06 Score=78.81 Aligned_cols=83 Identities=18% Similarity=0.236 Sum_probs=73.6
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 010717 417 MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN---VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARS 493 (503)
Q Consensus 417 dpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~---~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~ 493 (503)
.+..+.+++++|.++...+++++|+.+|++++++.++. ..+++.+|.+|..+|++++|++.|+++++++|.+.....
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 45677889999999999999999999999999987653 468999999999999999999999999999999987766
Q ss_pred HHHHHH
Q 010717 494 TIHRLT 499 (503)
Q Consensus 494 ~La~Lq 499 (503)
.+..+.
T Consensus 111 ~lg~~~ 116 (172)
T PRK02603 111 NIAVIY 116 (172)
T ss_pred HHHHHH
Confidence 666554
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.49 E-value=2.2e-06 Score=86.09 Aligned_cols=108 Identities=16% Similarity=0.141 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc-------------------------------CCChhhHHHHHHHHH
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKS-------------------------------GDMATMMEVLSTRAS 429 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~-------------------------------~ddpd~A~aysNrAl 429 (503)
.+.....+..++..+++++|++.++++++..|.+ +..+....++..++.
T Consensus 43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~ 122 (355)
T cd05804 43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAF 122 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHH
Confidence 4456677888888899999988888887654321 112334455667889
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717 430 CYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488 (503)
Q Consensus 430 cylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen 488 (503)
++..+|++++|++.++++++++|++..+++.++.+|+..|++++|++.|++++++.|.+
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~ 181 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS 181 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC
Confidence 99999999999999999999999999999999999999999999999999999998754
No 100
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.49 E-value=6e-07 Score=88.54 Aligned_cols=116 Identities=21% Similarity=0.171 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ 460 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr 460 (503)
...+......+...++++++.+.++++.... ..+.+..+|..+|.|+.+.|+.++|+++++++++++|++..++..
T Consensus 110 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~ 185 (280)
T PF13429_consen 110 PRYLLSALQLYYRLGDYDEAEELLEKLEELP----AAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNA 185 (280)
T ss_dssp --------H-HHHTT-HHHHHHHHHHHHH-T-------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred cchhhHHHHHHHHHhHHHHHHHHHHHHHhcc----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 4455566777889999999999999987541 124567889999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717 461 RALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK 500 (503)
Q Consensus 461 lA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk 500 (503)
++.++..+|+++++.+.+....+..|.++.+...+..+..
T Consensus 186 l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~ 225 (280)
T PF13429_consen 186 LAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYL 225 (280)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhc
Confidence 9999999999999988888888887777666666655543
No 101
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.48 E-value=2.7e-06 Score=96.42 Aligned_cols=115 Identities=13% Similarity=0.022 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
.++.+..+++.+|.+|++++|++++.++|++ +|....+|+-+|.||.++|+.++|+...-.|--++|.+...|.
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~ 211 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQ------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWK 211 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHH
Confidence 4677888999999999999999999999988 5566788888999998888888888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK 500 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk 500 (503)
+++.....++.+++|+-+|.+|++++|.+.+.......+.+
T Consensus 212 ~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~ 252 (895)
T KOG2076|consen 212 RLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQ 252 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 88888888888888888888888888888665555544443
No 102
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.48 E-value=5.7e-07 Score=91.91 Aligned_cols=99 Identities=21% Similarity=0.254 Sum_probs=85.8
Q ss_pred cHHHhCCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010717 366 TTELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445 (503)
Q Consensus 366 e~eLEaL~~~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedae 445 (503)
...-+++...+. .+..|.+++.+|.+.|.|+.|++-++.||.+ +|.+..+|..++++|+.+|+|++|++.|+
T Consensus 102 ~kY~~AI~l~P~--nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i------Dp~yskay~RLG~A~~~~gk~~~A~~ayk 173 (304)
T KOG0553|consen 102 DKYTEAIELDPT--NAVYYCNRAAAYSKLGEYEDAVKDCESALSI------DPHYSKAYGRLGLAYLALGKYEEAIEAYK 173 (304)
T ss_pred HHHHHHHhcCCC--cchHHHHHHHHHHHhcchHHHHHHHHHHHhc------ChHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence 334445544554 4778889999999999999999999999999 78899999999999999999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 010717 446 KVLEQDDTNVSVLVQRALLYESMEKYK 472 (503)
Q Consensus 446 kALkLdPd~~kAlyrlA~Ay~~LGdye 472 (503)
++|+|+|+|....-+|..+-..+.+-+
T Consensus 174 KaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 174 KALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred hhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999988888887777776655
No 103
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.48 E-value=1.4e-06 Score=100.14 Aligned_cols=113 Identities=8% Similarity=0.088 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
....+..+|..+...|+|++|+++|++++++ +|.+..++..++.++.+.+++++|++.++++++++|..... .
T Consensus 101 ~~~~llalA~ly~~~gdyd~Aiely~kaL~~------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l 173 (822)
T PRK14574 101 SSRGLASAARAYRNEKRWDQALALWQSSLKK------DPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-M 173 (822)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-H
Confidence 4556666677888888888888888888887 45556777777888888888888888888888888874433 4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT 499 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq 499 (503)
.++.++..++++.+|++.|+++++++|++.++...+..+.
T Consensus 174 ~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l 213 (822)
T PRK14574 174 TLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEIL 213 (822)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4455555567776788888888888888887766655443
No 104
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.47 E-value=1.7e-06 Score=92.79 Aligned_cols=68 Identities=22% Similarity=0.110 Sum_probs=65.6
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717 417 MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSV---LVQRALLYESMEKYKLGAEDLRTVLKI 484 (503)
Q Consensus 417 dpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kA---lyrlA~Ay~~LGdyeeAle~LqkALkL 484 (503)
+|.++.+|+|+|.+|+++|+|++|+..|+++|+++|++.++ ||++|.||..+|++++|+++|++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 68889999999999999999999999999999999999865 999999999999999999999999998
No 105
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.47 E-value=2.1e-06 Score=71.95 Aligned_cols=78 Identities=18% Similarity=0.124 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 010717 422 EVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN---VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN---RIARSTI 495 (503)
Q Consensus 422 ~aysNrAlcylrLGdyeeALedaekALkLdPd~---~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen---~eAk~~L 495 (503)
.+++.++.++++.+++++|++.|++++..+|++ ..+++.+|.+++..+++++|+..|+++++++|++ ..+...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 578889999999999999999999999999876 6799999999999999999999999999999986 4455555
Q ss_pred HHHH
Q 010717 496 HRLT 499 (503)
Q Consensus 496 a~Lq 499 (503)
..+.
T Consensus 83 ~~~~ 86 (119)
T TIGR02795 83 GMSL 86 (119)
T ss_pred HHHH
Confidence 4443
No 106
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.46 E-value=3.1e-06 Score=92.70 Aligned_cols=111 Identities=13% Similarity=0.091 Sum_probs=87.4
Q ss_pred chHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHhcC--------------------------------------CC
Q 010717 379 VTGAAAKNKGVDNQKAGQ---YADAIKWLSWAVILLEKSG--------------------------------------DM 417 (503)
Q Consensus 379 ~~A~alk~lGn~~fkqGD---Y~eAIk~YeKALeL~pk~~--------------------------------------dd 417 (503)
..+-.++..|..++.+.+ +..|+.+|++|++++|... .+
T Consensus 337 ~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~ 416 (517)
T PRK10153 337 GAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPEL 416 (517)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccC
Confidence 356667788888877655 7889999999998865311 01
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 010717 418 ATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRI 490 (503)
Q Consensus 418 pd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~e 490 (503)
+....+|.-++..++..|++++|+..++++++++| +..+|+.+|.+|...|++++|++.|+++++++|.++.
T Consensus 417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 12234566677777788999999999999999999 4789999999999999999999999999999998764
No 107
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.46 E-value=2.5e-06 Score=89.08 Aligned_cols=104 Identities=19% Similarity=0.272 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 010717 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRA 462 (503)
Q Consensus 383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA 462 (503)
.+..+...++..||+..||++.++.|++ .+=++.+|..|+.||...++..+||.+++++-+|.-++.+.+|.+.
T Consensus 157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis 230 (504)
T KOG0624|consen 157 VLVQQLKSASGSGDCQNAIEMITHLLEI------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKIS 230 (504)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhc------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHH
Confidence 3455666778899999999999999999 6678999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 010717 463 LLYESMEKYKLGAEDLRTVLKIDPSNRIAR 492 (503)
Q Consensus 463 ~Ay~~LGdyeeAle~LqkALkLDPen~eAk 492 (503)
.+|+..|+.++++...++.|+++|+++...
T Consensus 231 ~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf 260 (504)
T KOG0624|consen 231 QLLYTVGDAENSLKEIRECLKLDPDHKLCF 260 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHccCcchhhHH
Confidence 999999999999999999999999996553
No 108
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=4.3e-07 Score=96.14 Aligned_cols=123 Identities=22% Similarity=0.182 Sum_probs=105.8
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGD------MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT 453 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~d------dpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd 453 (503)
.+.+++..|.+++-..+.+.|+..|+++|.++|...+ .+...+.+-++|.-.++.|+|.+|.+.|.++|.++|.
T Consensus 202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~ 281 (486)
T KOG0550|consen 202 NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS 281 (486)
T ss_pred hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc
Confidence 5778999999999999999999999999999764322 3455677888999999999999999999999999998
Q ss_pred C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717 454 N----VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502 (503)
Q Consensus 454 ~----~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL 502 (503)
+ ++.|+++|.++..+|+.++|+.++..+++||+....+.....+|...+
T Consensus 282 n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 282 NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLAL 334 (486)
T ss_pred ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 6 567999999999999999999999999999998766666655555443
No 109
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.43 E-value=1.2e-06 Score=97.90 Aligned_cols=105 Identities=19% Similarity=0.177 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHcCCCCHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVA--DCSKVLEQDDTNVSV 457 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALe--daekALkLdPd~~kA 457 (503)
.+..|+..|..+..++++.+|.+.|..|+.+ +|+...+...+|.|+++.|+-.-|.. .+..++++||.+.++
T Consensus 683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~ea 756 (799)
T KOG4162|consen 683 SASVYYLRGLLLEVKGQLEEAKEAFLVALAL------DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEA 756 (799)
T ss_pred hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHH
Confidence 5778999999999999999999999999999 67788899999999999999877777 999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 010717 458 LVQRALLYESMEKYKLGAEDLRTVLKIDPSNRI 490 (503)
Q Consensus 458 lyrlA~Ay~~LGdyeeAle~LqkALkLDPen~e 490 (503)
||.+|.++..+|+.++|.++|+.+++|++.++.
T Consensus 757 W~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 757 WYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999999999999999988754
No 110
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.43 E-value=2e-06 Score=89.12 Aligned_cols=121 Identities=15% Similarity=0.058 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ 460 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr 460 (503)
..++..+-.+|-+.++|++||+.-++.+++.++ ...-..+..|+.++..++...+.++|+..+.+|++.+|+.+.+-+.
T Consensus 141 ~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q-~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~ 219 (389)
T COG2956 141 EGALQQLLNIYQATREWEKAIDVAERLVKLGGQ-TYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASII 219 (389)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc-cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhh
Confidence 345566677777777777777777776665322 1234578889999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHhhh
Q 010717 461 RALLYESMEKYKLGAEDLRTVLKIDPSN-RIARSTIHRLTKMV 502 (503)
Q Consensus 461 lA~Ay~~LGdyeeAle~LqkALkLDPen-~eAk~~La~LqklL 502 (503)
+|.+++..|+|++|++.|+.+++.||+. .++...|.+|...+
T Consensus 220 lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l 262 (389)
T COG2956 220 LGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQL 262 (389)
T ss_pred hhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999987 57777777776654
No 111
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.42 E-value=2e-06 Score=98.17 Aligned_cols=118 Identities=18% Similarity=0.131 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN-VSVL 458 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~-~kAl 458 (503)
.+.++..+++-+|-.++|..+.+++..|+... ......++.++.+|.+|..+|+|++|..+|.++++.++++ .-++
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t---~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~ 345 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNT---ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPL 345 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccc
Confidence 57788999999999999999999999999763 2245677889999999999999999999999999999988 8899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717 459 VQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK 500 (503)
Q Consensus 459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk 500 (503)
+.+|+.|+..++++.|+.+|+++++..|++.+....|..+..
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya 387 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYA 387 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHH
Confidence 999999999999999999999999999999999988887754
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.38 E-value=3.6e-06 Score=84.58 Aligned_cols=109 Identities=12% Similarity=0.119 Sum_probs=97.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 010717 385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALL 464 (503)
Q Consensus 385 k~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~A 464 (503)
......++..|+-+.++.+..+++.. .+.+.+++..++...++.|+|.+|+..++++..++|++.++|..+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaa 143 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAA 143 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHH
Confidence 67788888999988888888886654 455667777799999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717 465 YESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT 499 (503)
Q Consensus 465 y~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq 499 (503)
|..+|++++|...|.+++++.|.++.+...|.-..
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~ 178 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELAPNEPSIANNLGMSL 178 (257)
T ss_pred HHHccChhHHHHHHHHHHHhccCCchhhhhHHHHH
Confidence 99999999999999999999999998888776553
No 113
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.37 E-value=4e-06 Score=91.63 Aligned_cols=111 Identities=24% Similarity=0.258 Sum_probs=96.7
Q ss_pred CCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Q 010717 375 PPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKS--GDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD- 451 (503)
Q Consensus 375 ~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~--~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd- 451 (503)
......+..+.+++..|+++|+|++|..+|++|+++..+. ...+.-+..+.+++.++..++++++|+.++++++++.
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 3444578889999999999999999999999999998762 2356678889999999999999999999999999874
Q ss_pred ----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 010717 452 ----D---TNVSVLVQRALLYESMEKYKLGAEDLRTVLKID 485 (503)
Q Consensus 452 ----P---d~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLD 485 (503)
+ .-++.+.++|.+|+.+|+|++|.+.|++++++.
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 2 336688899999999999999999999999986
No 114
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.36 E-value=3.2e-06 Score=95.90 Aligned_cols=115 Identities=19% Similarity=0.262 Sum_probs=101.9
Q ss_pred cccHHHhCCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Q 010717 364 GTTTELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVAD 443 (503)
Q Consensus 364 aae~eLEaL~~~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALed 443 (503)
+.+...|.++..+. ...+|+.+|.+|..+||...|+.....|-.+ +|.+...|..++....++|++++|.-+
T Consensus 158 A~~i~~EvIkqdp~--~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL------~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 158 AEEILMEVIKQDPR--NPIAYYTLGEIYEQRGDIEKALNFWLLAAHL------NPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HHHHHHHHHHhCcc--chhhHHHHHHHHHHcccHHHHHHHHHHHHhc------CCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 33344455555554 4778999999999999999999999998888 445568999999999999999999999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717 444 CSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDP 486 (503)
Q Consensus 444 aekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP 486 (503)
|.+||+++|.+.+..++++.+|.++|++.+|++.|++++++.|
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999999
No 115
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.36 E-value=7.9e-06 Score=81.99 Aligned_cols=110 Identities=22% Similarity=0.277 Sum_probs=89.2
Q ss_pred chHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----
Q 010717 379 VTGAAAKNKGVDNQKA-GQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT---- 453 (503)
Q Consensus 379 ~~A~alk~lGn~~fkq-GDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd---- 453 (503)
.-+.++..+|.+|... +++++|+++|++|+++....+.......++.+++.++.++++|++|++.|++++...-+
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~ 191 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL 191 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence 3466788899999888 99999999999999998877766667788899999999999999999999999875421
Q ss_pred --CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717 454 --NV-SVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488 (503)
Q Consensus 454 --~~-kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen 488 (503)
.. +.++..+.|++.++|+..|.+.|++...++|..
T Consensus 192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 13 245677889999999999999999999999843
No 116
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.34 E-value=2.7e-07 Score=95.75 Aligned_cols=102 Identities=19% Similarity=0.272 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
.+...+..+..++..|++++||+.|..||++ .|..+.+|.+|+.+++++++..+|+.+|..+|+++|+..+-|-
T Consensus 113 qa~e~k~~A~eAln~G~~~~ai~~~t~ai~l------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~yk 186 (377)
T KOG1308|consen 113 QANDKKVQASEALNDGEFDTAIELFTSAIEL------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYK 186 (377)
T ss_pred HHHHHHHHHHHHhcCcchhhhhccccccccc------CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccc
Confidence 4556777888999999999999999999998 6788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLKIDPS 487 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALkLDPe 487 (503)
-++.+...++++++|..+|+.+++++-+
T Consensus 187 frg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 187 FRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred hhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999753
No 117
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.33 E-value=2.3e-06 Score=84.88 Aligned_cols=112 Identities=22% Similarity=0.215 Sum_probs=104.1
Q ss_pred CCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 010717 373 PPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDD 452 (503)
Q Consensus 373 ~~~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdP 452 (503)
+....++++..++..|..|-..|-+..|.--|.+++.+ .|..+.+++-+|..+...|+|+.|.+.++..+++||
T Consensus 57 ~~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp 130 (297)
T COG4785 57 RALTDEERAQLLFERGVLYDSLGLRALARNDFSQALAI------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 130 (297)
T ss_pred ccCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCC
Confidence 34456678999999999999999999999999999999 677889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 010717 453 TNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRI 490 (503)
Q Consensus 453 d~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~e 490 (503)
.+--++.++|.+++.-|+|+.|.++|.+-.+-||.++-
T Consensus 131 ~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 131 TYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred cchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence 99999999999999999999999999999999998864
No 118
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=4.5e-06 Score=88.19 Aligned_cols=101 Identities=19% Similarity=0.169 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
...++.+++.++.+.++|.+|+++++++|++ ++.+..+++.+|.|++.+++|+.|+.+|+++++++|.+-.+..
T Consensus 256 k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~ 329 (397)
T KOG0543|consen 256 KLACHLNLAACYLKLKEYKEAIESCNKVLEL------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARA 329 (397)
T ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 4557889999999999999999999999999 6677899999999999999999999999999999999988888
Q ss_pred HHHHHHHHcCCHHHH-HHHHHHHHHhCC
Q 010717 460 QRALLYESMEKYKLG-AEDLRTVLKIDP 486 (503)
Q Consensus 460 rlA~Ay~~LGdyeeA-le~LqkALkLDP 486 (503)
.+..+.....++.+. .+.|.+++..-.
T Consensus 330 el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 330 ELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 888888877776665 777888887654
No 119
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.28 E-value=4.9e-06 Score=88.46 Aligned_cols=106 Identities=18% Similarity=0.095 Sum_probs=90.5
Q ss_pred cHHHhCCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010717 366 TTELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCS 445 (503)
Q Consensus 366 e~eLEaL~~~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedae 445 (503)
...++.+....++ ....++.++...++..+|++++.++|+. .|.++.++...+..+++.++++.|++.++
T Consensus 189 i~lle~L~~~~pe----v~~~LA~v~l~~~~E~~AI~ll~~aL~~------~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk 258 (395)
T PF09295_consen 189 IELLEKLRERDPE----VAVLLARVYLLMNEEVEAIRLLNEALKE------NPQDSELLNLQAEFLLSKKKYELALEIAK 258 (395)
T ss_pred HHHHHHHHhcCCc----HHHHHHHHHHhcCcHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3445555544443 4556888888899999999999999966 45568999999999999999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010717 446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTV 481 (503)
Q Consensus 446 kALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkA 481 (503)
+++.+.|...+.|+.++.+|..+|+|++|+..+..+
T Consensus 259 ~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 259 KAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999999999999999999888744
No 120
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.28 E-value=2e-05 Score=82.87 Aligned_cols=94 Identities=19% Similarity=0.096 Sum_probs=44.8
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 010717 385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATM-MEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRAL 463 (503)
Q Consensus 385 k~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~-A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~ 463 (503)
...+..+..+|++++|.++|.++++..+ +. ..+...++.+++..+++++|++.+++.++..|+++.+++.++.
T Consensus 122 llaA~aa~~~g~~~~A~~~l~~a~~~~p------~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~ 195 (409)
T TIGR00540 122 IKAAEAAQQRGDEARANQHLEEAAELAG------NDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEE 195 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC------cCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3344444555555555555555443311 11 1122223455555555555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHh
Q 010717 464 LYESMEKYKLGAEDLRTVLKI 484 (503)
Q Consensus 464 Ay~~LGdyeeAle~LqkALkL 484 (503)
+|...+++++|++.+++.++.
T Consensus 196 ~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 196 AYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHHhhHHHHHHHHHHHHHc
Confidence 555555555555555555544
No 121
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.26 E-value=7.7e-06 Score=89.46 Aligned_cols=106 Identities=22% Similarity=0.299 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKS--GDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD------ 451 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~--~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd------ 451 (503)
.+..+..+|..|...++|.+|+.+|++|+.+.+.. .+.+.-+.++.|+|..|.+.|+|++|..+|++|++|.
T Consensus 240 va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~ 319 (508)
T KOG1840|consen 240 VASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGA 319 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhcc
Confidence 45566679999999999999999999999987642 3467888999999999999999999999999999874
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 010717 452 --DTNVSVLVQRALLYESMEKYKLGAEDLRTVLKID 485 (503)
Q Consensus 452 --Pd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLD 485 (503)
++-...+..++.++..++++++|+..|++++++.
T Consensus 320 ~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 320 SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 3335577788999999999999999999999975
No 122
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=1.6e-05 Score=80.24 Aligned_cols=111 Identities=18% Similarity=0.176 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
.....+..|..+...+.|++|+++|+..|+- +|.+..+|-..-.+...+|+--+||+.+..-++..+.+.++|.
T Consensus 85 S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d------dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~ 158 (289)
T KOG3060|consen 85 SKRVGKLKAMLLEATGNYKEAIEYYESLLED------DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWH 158 (289)
T ss_pred ChhHHHHHHHHHHHhhchhhHHHHHHHHhcc------CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHH
Confidence 3456777888999999999999999887743 3333333333333333444444444444444444444444444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIH 496 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La 496 (503)
.++.+|..+++|++|+-||++++-+.|-+......+.
T Consensus 159 eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rla 195 (289)
T KOG3060|consen 159 ELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLA 195 (289)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 4444444444444444444444444444444333333
No 123
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.20 E-value=1.1e-05 Score=88.35 Aligned_cols=98 Identities=19% Similarity=0.172 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 010717 384 AKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRAL 463 (503)
Q Consensus 384 lk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~ 463 (503)
-+.+|..+++.|+..+|+-+|+.|+.. +|.++++|..||.++.+.++-..||..+++|++|+|++.+++..||.
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkq------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAV 361 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQ------DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAV 361 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhh------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 467899999999999999999999987 78899999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC
Q 010717 464 LYESMEKYKLGAEDLRTVLKIDPS 487 (503)
Q Consensus 464 Ay~~LGdyeeAle~LqkALkLDPe 487 (503)
.|...+.-.+|+++|.+-|+..|.
T Consensus 362 SytNeg~q~~Al~~L~~Wi~~~p~ 385 (579)
T KOG1125|consen 362 SYTNEGLQNQALKMLDKWIRNKPK 385 (579)
T ss_pred HHhhhhhHHHHHHHHHHHHHhCcc
Confidence 999999999999999999888763
No 124
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.20 E-value=4.1e-05 Score=80.42 Aligned_cols=97 Identities=21% Similarity=0.106 Sum_probs=60.1
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 010717 388 GVDNQKAGQYADAIKWLSWAVILLEKSGDMATM-MEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYE 466 (503)
Q Consensus 388 Gn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~-A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~ 466 (503)
+..+.++|++++|.++|.+|.+.. ++. .......+.+++..|++++|++.+++.++++|+++.++..++.+|.
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~~------~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~ 198 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAELA------DNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYI 198 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC------CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 444466677777777777666541 121 1122233666667777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH
Q 010717 467 SMEKYKLGAEDLRTVLKIDPSNRI 490 (503)
Q Consensus 467 ~LGdyeeAle~LqkALkLDPen~e 490 (503)
..|++++|++.+.+..+....+.+
T Consensus 199 ~~gdw~~a~~~l~~l~k~~~~~~~ 222 (398)
T PRK10747 199 RTGAWSSLLDILPSMAKAHVGDEE 222 (398)
T ss_pred HHHhHHHHHHHHHHHHHcCCCCHH
Confidence 777777777666666666555433
No 125
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.19 E-value=2.1e-05 Score=82.69 Aligned_cols=114 Identities=8% Similarity=-0.119 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEV--LSTRASCYKEVGEYKKAVADCSKVLEQDDTNV-- 455 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~a--ysNrAlcylrLGdyeeALedaekALkLdPd~~-- 455 (503)
....+..++..+...|++++|++.++++++..+ +.... ..-+....+..++.+++++.++++++.+|+++
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p------d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~ 335 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG------DDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKC 335 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC------CcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhH
Confidence 567888899999999999999999999998733 22221 12233444556889999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHh
Q 010717 456 SVLVQRALLYESMEKYKLGAEDLR--TVLKIDPSNRIARSTIHRLTK 500 (503)
Q Consensus 456 kAlyrlA~Ay~~LGdyeeAle~Lq--kALkLDPen~eAk~~La~Lqk 500 (503)
..+..+|.+++.+++|++|.++|+ .+++++|++.... .+.++..
T Consensus 336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~ 381 (409)
T TIGR00540 336 CINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFD 381 (409)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHH
Confidence 788899999999999999999999 5888888776644 6666544
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.18 E-value=1.7e-05 Score=91.57 Aligned_cols=62 Identities=21% Similarity=0.229 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717 422 EVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKI 484 (503)
Q Consensus 422 ~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkL 484 (503)
.++..+|.||-++|++++|++.|+++|+++|+++.++.++|-.|... +.++|++.+.+|++.
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555 555555555555554
No 127
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.18 E-value=9.6e-06 Score=81.36 Aligned_cols=106 Identities=19% Similarity=0.177 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--C----
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDD--T---- 453 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdP--d---- 453 (503)
-+..+...|+.|...++|++|.+.|.+|.++..+..+...-+..|.+.+.||.+. ++++|++.+++|+.+.- .
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~ 112 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQ 112 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHH
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHH
Confidence 3556667788899999999999999999998877666666778888888888666 99999999999998731 1
Q ss_pred CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC
Q 010717 454 NVSVLVQRALLYESM-EKYKLGAEDLRTVLKIDP 486 (503)
Q Consensus 454 ~~kAlyrlA~Ay~~L-GdyeeAle~LqkALkLDP 486 (503)
-.+++.++|.+|... +++++|+++|++++++..
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~ 146 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYE 146 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 256888999999998 999999999999999854
No 128
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.17 E-value=1.4e-05 Score=91.37 Aligned_cols=118 Identities=18% Similarity=0.187 Sum_probs=105.6
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717 379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVL 458 (503)
Q Consensus 379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAl 458 (503)
..++.++.+|..|.++|+|++|.++|.+++...+ ....-.++.+|..|++.++++.|+..++++++..|++.+.+
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~-----d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm 379 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN-----DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM 379 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC-----CCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence 3577899999999999999999999999997622 12356788999999999999999999999999999999999
Q ss_pred HHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717 459 VQRALLYESME----KYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM 501 (503)
Q Consensus 459 yrlA~Ay~~LG----dyeeAle~LqkALkLDPen~eAk~~La~Lqkl 501 (503)
..+|.+|...+ ..++|...+.++++..|.+.++...+.++.++
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ 426 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence 99999999886 67899999999999999999999988888654
No 129
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.15 E-value=9.9e-05 Score=66.64 Aligned_cols=115 Identities=15% Similarity=0.072 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN---VS 456 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~---~k 456 (503)
.+...+......+..+++..+.+.+++.++- .++.+.-..++..++.+++..|++++|++.|++++...++. ..
T Consensus 10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~---~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~ 86 (145)
T PF09976_consen 10 QASALYEQALQALQAGDPAKAEAAAEQLAKD---YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPL 86 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHH
Confidence 3556667777777899999998888887764 34444556778889999999999999999999999987654 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717 457 VLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL 498 (503)
Q Consensus 457 AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L 498 (503)
+.++++.+++.+++|++|+..|+.+ .-.+-...+...+..+
T Consensus 87 a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi 127 (145)
T PF09976_consen 87 ARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDI 127 (145)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHH
Confidence 8999999999999999999999763 2222233444444444
No 130
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.3e-05 Score=87.51 Aligned_cols=111 Identities=17% Similarity=0.180 Sum_probs=96.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCHHH
Q 010717 385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ-------DDTNVSV 457 (503)
Q Consensus 385 k~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL-------dPd~~kA 457 (503)
.-+|..|.+.+.++.|.++|.+|+.+ .|.+.-++..+|.+.+..++|.+|+.++++++.. -+.|...
T Consensus 384 LYlgmey~~t~n~kLAe~Ff~~A~ai------~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~ 457 (611)
T KOG1173|consen 384 LYLGMEYMRTNNLKLAEKFFKQALAI------APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPT 457 (611)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhc------CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHH
Confidence 34788888899999999999999988 4456679999999999999999999999999832 1357778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717 458 LVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM 501 (503)
Q Consensus 458 lyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl 501 (503)
+.++|.+|+++++|++|+.+|+++|.+.|.+..+...+.-+.-+
T Consensus 458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~l 501 (611)
T KOG1173|consen 458 LNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHL 501 (611)
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999988887766544
No 131
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.13 E-value=4.1e-06 Score=89.76 Aligned_cols=113 Identities=15% Similarity=0.129 Sum_probs=92.8
Q ss_pred HHHHHHHHH--hCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 010717 385 KNKGVDNQK--AGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRA 462 (503)
Q Consensus 385 k~lGn~~fk--qGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA 462 (503)
.++...+|. -+++.+|..+-..|+.+ +...+.++.|.+.+.+..|++++|++.|+++|..+....+++|++|
T Consensus 458 ~nl~~l~flqggk~~~~aqqyad~aln~------dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnig 531 (840)
T KOG2003|consen 458 NNLCALRFLQGGKDFADAQQYADIALNI------DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIG 531 (840)
T ss_pred hhhHHHHHHhcccchhHHHHHHHHHhcc------cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence 344444444 23566666666666655 3445677888888889999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhhC
Q 010717 463 LLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMVD 503 (503)
Q Consensus 463 ~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklLd 503 (503)
..+..+++.++|+++|.+...+--++.++...+..+.++++
T Consensus 532 lt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~le 572 (840)
T KOG2003|consen 532 LTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLE 572 (840)
T ss_pred ccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 99999999999999999999998899999998888877653
No 132
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.12 E-value=4.7e-05 Score=79.99 Aligned_cols=116 Identities=11% Similarity=0.091 Sum_probs=93.9
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCCHH-
Q 010717 379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTR-ASCYKEVGEYKKAVADCSKVLEQDDTNVS- 456 (503)
Q Consensus 379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNr-AlcylrLGdyeeALedaekALkLdPd~~k- 456 (503)
.++..+...|..++..|||++|.+...++.+. .+. ..+++.+ +.+..+.|++++|.++++++.+.+|+...
T Consensus 82 ~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~----~~~---p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~ 154 (398)
T PRK10747 82 RRARKQTEQALLKLAEGDYQQVEKLMTRNADH----AEQ---PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLP 154 (398)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----ccc---hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHH
Confidence 35667788999999999999999887776543 111 2344444 66669999999999999999999998754
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717 457 VLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM 501 (503)
Q Consensus 457 AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl 501 (503)
.....+.++...+++++|++.++++++++|+++.+...+.+++..
T Consensus 155 ~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~ 199 (398)
T PRK10747 155 VEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR 199 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 444569999999999999999999999999999988888776543
No 133
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.11 E-value=1e-05 Score=84.22 Aligned_cols=113 Identities=13% Similarity=0.006 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
.++.+..+..+|.+..+...|+..|.+.++. -|.+.+.+..++.++..++++++|+++|+.+++++|.++++.-
T Consensus 255 ~~dTfllLskvY~ridQP~~AL~~~~~gld~------fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiA 328 (478)
T KOG1129|consen 255 HPDTFLLLSKVYQRIDQPERALLVIGEGLDS------FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIA 328 (478)
T ss_pred chhHHHHHHHHHHHhccHHHHHHHHhhhhhc------CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeee
Confidence 3566677777777777777777777777765 3556777777788888888888888888888887777777766
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL 498 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L 498 (503)
.+|.-|+.-++.|-|+.+|+++|++.-.+++....+.-|
T Consensus 329 cia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLC 367 (478)
T KOG1129|consen 329 CIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLC 367 (478)
T ss_pred eeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHH
Confidence 666667767777777777777777666666666555544
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=3.8e-05 Score=77.59 Aligned_cols=113 Identities=20% Similarity=0.107 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
....++.+-.+...+|+-.+||+.+.+-++.+ +.+.++|..++.+|+..++|++|.-++++++.+.|.++-.+-
T Consensus 119 ~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F------~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~ 192 (289)
T KOG3060|consen 119 DTVIRKRKLAILKAQGKNLEAIKELNEYLDKF------MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQ 192 (289)
T ss_pred hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh------cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHH
Confidence 45566777677788899999999998888874 356799999999999999999999999999999999999999
Q ss_pred HHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717 460 QRALLYESME---KYKLGAEDLRTVLKIDPSNRIARSTIHRL 498 (503)
Q Consensus 460 rlA~Ay~~LG---dyeeAle~LqkALkLDPen~eAk~~La~L 498 (503)
++|.+++-+| +++-|.++|.++|++.|.+..+...+--+
T Consensus 193 rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 193 RLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 9999998876 57779999999999999775555444333
No 135
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.09 E-value=4e-05 Score=86.21 Aligned_cols=116 Identities=18% Similarity=0.073 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ 460 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr 460 (503)
-..+...+..+.+.+.-++|.-++.+|-.+ ++..+..|+.+|.++...|+.++|.+.|..++.++|+++.....
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~------~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~A 723 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKI------DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTA 723 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhc------chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHH
Confidence 345666788888888889999999999887 56788999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717 461 RALLYESMEKYKLGAE--DLRTVLKIDPSNRIARSTIHRLTKMV 502 (503)
Q Consensus 461 lA~Ay~~LGdyeeAle--~LqkALkLDPen~eAk~~La~LqklL 502 (503)
+|.+|...|+-..|.. .+..++++||.+.++...+.++.+.+
T Consensus 724 la~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~ 767 (799)
T KOG4162|consen 724 LAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKL 767 (799)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 9999999999888888 99999999999999999999887764
No 136
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=3.4e-06 Score=87.96 Aligned_cols=122 Identities=16% Similarity=0.203 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-------------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGD-------------MATMMEVLSTRASCYKEVGEYKKAVADCSK 446 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~d-------------dpd~A~aysNrAlcylrLGdyeeALedaek 446 (503)
.....+..++..++.++|.+|+..|.+++........ ......++.|++.|-++++.+..|+..+..
T Consensus 221 ~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~ 300 (372)
T KOG0546|consen 221 REEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNE 300 (372)
T ss_pred hhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccc
Confidence 3455677899999999999999999999987551110 122345678899999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717 447 VLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM 501 (503)
Q Consensus 447 ALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl 501 (503)
+++.++...++||+++.+++.+.++++|+++++.+....|++.++...+....+.
T Consensus 301 ~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~ 355 (372)
T KOG0546|consen 301 ALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK 355 (372)
T ss_pred ccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence 9999999999999999999999999999999999999999999998888776554
No 137
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.07 E-value=1.1e-05 Score=90.32 Aligned_cols=96 Identities=13% Similarity=0.098 Sum_probs=86.8
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 010717 387 KGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYE 466 (503)
Q Consensus 387 lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~ 466 (503)
+|.-.+.+++|.+|.+.++..+++ .+.....|++++.|++++++++.|+++|..|+.++|++..+|.+++.+|+
T Consensus 491 ~~~~~~~~~~fs~~~~hle~sl~~------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi 564 (777)
T KOG1128|consen 491 LALLILSNKDFSEADKHLERSLEI------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI 564 (777)
T ss_pred hccccccchhHHHHHHHHHHHhhc------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence 344445568999999999999988 67788999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC
Q 010717 467 SMEKYKLGAEDLRTVLKIDPSN 488 (503)
Q Consensus 467 ~LGdyeeAle~LqkALkLDPen 488 (503)
.+++..+|...++++++-+-++
T Consensus 565 ~~~~k~ra~~~l~EAlKcn~~~ 586 (777)
T KOG1128|consen 565 RLKKKKRAFRKLKEALKCNYQH 586 (777)
T ss_pred HHhhhHHHHHHHHHHhhcCCCC
Confidence 9999999999999999987544
No 138
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=6.4e-05 Score=77.15 Aligned_cols=144 Identities=19% Similarity=0.187 Sum_probs=109.3
Q ss_pred ccccccccCCCCCCCcccHHHhCCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 010717 349 DDWGYSDFGGGTDDGGTTTELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRA 428 (503)
Q Consensus 349 ~DW~Vd~f~ag~d~eaae~eLEaL~~~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrA 428 (503)
+.--|++|.+...++.....++.+... ..+.....+..+...+++.+|...|..++.+. +....+...++
T Consensus 106 dGqpVdgF~G~qPesqlr~~ld~~~~~----~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~------~~~~~~~~~la 175 (304)
T COG3118 106 DGQPVDGFQGAQPESQLRQFLDKVLPA----EEEEALAEAKELIEAEDFGEAAPLLKQALQAA------PENSEAKLLLA 175 (304)
T ss_pred CCcCccccCCCCcHHHHHHHHHHhcCh----HHHHHHHHhhhhhhccchhhHHHHHHHHHHhC------cccchHHHHHH
Confidence 344677777665444455555554444 23345667888999999999999999999883 44467888899
Q ss_pred HHHHHcCCHHHHHHHHHH----------------------------------HHHcCCCCHHHHHHHHHHHHHcCCHHHH
Q 010717 429 SCYKEVGEYKKAVADCSK----------------------------------VLEQDDTNVSVLVQRALLYESMEKYKLG 474 (503)
Q Consensus 429 lcylrLGdyeeALedaek----------------------------------ALkLdPd~~kAlyrlA~Ay~~LGdyeeA 474 (503)
.||+..|+.++|...+.. .+..+|++..+.+.+|..|...|++++|
T Consensus 176 ~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~A 255 (304)
T COG3118 176 ECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAA 255 (304)
T ss_pred HHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999887766642 1224699999999999999999999999
Q ss_pred HHHHHHHHHhCC--CCHHHHHHHHHHHhhh
Q 010717 475 AEDLRTVLKIDP--SNRIARSTIHRLTKMV 502 (503)
Q Consensus 475 le~LqkALkLDP--en~eAk~~La~LqklL 502 (503)
++.|...|+.|- ++.++++.|.++..+.
T Consensus 256 le~Ll~~l~~d~~~~d~~~Rk~lle~f~~~ 285 (304)
T COG3118 256 LEHLLALLRRDRGFEDGEARKTLLELFEAF 285 (304)
T ss_pred HHHHHHHHHhcccccCcHHHHHHHHHHHhc
Confidence 999999999865 4567777777766554
No 139
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.06 E-value=2.5e-05 Score=81.45 Aligned_cols=99 Identities=20% Similarity=0.188 Sum_probs=90.8
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 010717 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLY 465 (503)
Q Consensus 386 ~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay 465 (503)
.+|.+|++.|-+.+|.+.++.+|+..+ ..+.+..++.+|.+..+.+.|+..+.+.+...|.+...+...+.+|
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~-------~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFP-------HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCC-------chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHH
Confidence 479999999999999999999997622 3567777999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHH
Q 010717 466 ESMEKYKLGAEDLRTVLKIDPSNRIA 491 (503)
Q Consensus 466 ~~LGdyeeAle~LqkALkLDPen~eA 491 (503)
..++++++|++.|+++++++|.|.|+
T Consensus 301 eam~~~~~a~~lYk~vlk~~~~nvEa 326 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLHPINVEA 326 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcCCcccee
Confidence 99999999999999999999977654
No 140
>PRK11906 transcriptional regulator; Provisional
Probab=98.06 E-value=5.4e-05 Score=81.64 Aligned_cols=109 Identities=10% Similarity=-0.072 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHhC---CHHHHHHHHHHHH---HHHHhcCCChhhHHHHHHHHHHHHHc---------CCHHHHHHHHHHH
Q 010717 383 AAKNKGVDNQKAG---QYADAIKWLSWAV---ILLEKSGDMATMMEVLSTRASCYKEV---------GEYKKAVADCSKV 447 (503)
Q Consensus 383 alk~lGn~~fkqG---DY~eAIk~YeKAL---eL~pk~~ddpd~A~aysNrAlcylrL---------GdyeeALedaekA 447 (503)
.++..|...+.+. +.+.|+.+|.+|+ ++ +|.++.+|..++.|++.. .+..+|++.++++
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~l------dp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rA 330 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDI------QTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYV 330 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccC------CcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 4566666665444 4567888888888 66 677788888888887654 2356778888888
Q ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010717 448 LEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHR 497 (503)
Q Consensus 448 LkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~ 497 (503)
++++|.++.++..+|.++...++++.|+..|++++.++|+...+......
T Consensus 331 veld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~ 380 (458)
T PRK11906 331 SDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRAL 380 (458)
T ss_pred HhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHH
Confidence 88888888888888888888888888888888888888887776655554
No 141
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2.8e-05 Score=82.86 Aligned_cols=121 Identities=12% Similarity=0.058 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC------------------------------CChhhHHHHHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSG------------------------------DMATMMEVLSTRAS 429 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~------------------------------ddpd~A~aysNrAl 429 (503)
+.++|.-+-..|...+++.||...-.+++.+++... -.|.+..+-..++.
T Consensus 367 rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AE 446 (564)
T KOG1174|consen 367 RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAE 446 (564)
T ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHH
Confidence 345566666778888888888887777766554211 14566667778899
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717 430 CYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM 501 (503)
Q Consensus 430 cylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl 501 (503)
.+...|++++++..+++.|...++. ..+..+|.++....++++|+++|..+|++||++....+.++++++.
T Consensus 447 L~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~ 517 (564)
T KOG1174|consen 447 LCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKS 517 (564)
T ss_pred HHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhc
Confidence 9999999999999999999988755 4788899999999999999999999999999999999999999875
No 142
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.03 E-value=0.00012 Score=70.20 Aligned_cols=118 Identities=18% Similarity=0.158 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVG-----------EYKKAVADCSKVL 448 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLG-----------dyeeALedaekAL 448 (503)
...+.+.+|..+++.++|.+|+..|++.++..|+ .+....+++.+|.|++.+. ...+|+..++..+
T Consensus 41 a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~---~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li 117 (203)
T PF13525_consen 41 APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN---SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELI 117 (203)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT----TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999988665 4566788999999987653 2458999999999
Q ss_pred HcCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717 449 EQDDTNVS-----------------VLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK 500 (503)
Q Consensus 449 kLdPd~~k-----------------AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk 500 (503)
...|+... --+..|.-|+..++|..|+..|+.+++..|+...+...|..+.+
T Consensus 118 ~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~ 186 (203)
T PF13525_consen 118 KRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAE 186 (203)
T ss_dssp HH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 99998632 12335888999999999999999999999999877776666543
No 143
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=3e-05 Score=78.88 Aligned_cols=115 Identities=17% Similarity=0.134 Sum_probs=99.2
Q ss_pred cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 010717 378 GVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSV 457 (503)
Q Consensus 378 ~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kA 457 (503)
+........+|.+.++.||.+.|..+++..-+...+...-.....++-|.+.+|+-.++|.+|...+++|+..|+.++.+
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a 288 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA 288 (366)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence 34577788899999999999999999997665444433334556788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 010717 458 LVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIAR 492 (503)
Q Consensus 458 lyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk 492 (503)
-.++|.|++.+++..+|++.++.+++++|......
T Consensus 289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~e 323 (366)
T KOG2796|consen 289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHE 323 (366)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence 99999999999999999999999999999865444
No 144
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.02 E-value=3.1e-05 Score=85.74 Aligned_cols=114 Identities=18% Similarity=0.138 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 010717 382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQR 461 (503)
Q Consensus 382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrl 461 (503)
..++.....+|..++|...++..++.|+- .|...+.+...|+.+..+|+-++|...++.++..|+...-.|+.+
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k------~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~ 81 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKK------FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVL 81 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHh------CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHH
Confidence 35677788889999999999999888874 344567788889999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717 462 ALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM 501 (503)
Q Consensus 462 A~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl 501 (503)
|.+++.-++|++|+.+|+.||+++|+|.++...|.-+|.+
T Consensus 82 gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q 121 (700)
T KOG1156|consen 82 GLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ 121 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888877654
No 145
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.01 E-value=0.00019 Score=71.37 Aligned_cols=118 Identities=14% Similarity=0.082 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCC------------------HHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGE------------------YKKAV 441 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGd------------------yeeAL 441 (503)
...+.+.+|..+++.++|++|+..|++.+++.|+ .+....+++.+|.|++.+++ ..+|+
T Consensus 68 a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~---~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~ 144 (243)
T PRK10866 68 SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT---HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAF 144 (243)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC---CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHH
Confidence 3445688999999999999999999999998555 45667899999999766641 35789
Q ss_pred HHHHHHHHcCCCCHH---H--------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717 442 ADCSKVLEQDDTNVS---V--------------LVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK 500 (503)
Q Consensus 442 edaekALkLdPd~~k---A--------------lyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk 500 (503)
+.+++.++..|+..- + -+..|.-|++.++|..|+..|+.+++..|+.......|..+.+
T Consensus 145 ~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ 220 (243)
T PRK10866 145 RDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMEN 220 (243)
T ss_pred HHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 999999999998632 2 2234777999999999999999999999998777766665543
No 146
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.00 E-value=6e-05 Score=87.21 Aligned_cols=112 Identities=19% Similarity=0.206 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----------
Q 010717 382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ----------- 450 (503)
Q Consensus 382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL----------- 450 (503)
.+++.+|.+|-+.+++++|++.|+++|++ ++.++.++.++|..|... ++++|++++.+|++.
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~------D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~ 189 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKA------DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIE 189 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHH
Confidence 58899999999999999999999999999 678899999999999999 999999999999864
Q ss_pred ---------CCCCHHHHHH--------HH------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717 451 ---------DDTNVSVLVQ--------RA------------LLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK 500 (503)
Q Consensus 451 ---------dPd~~kAlyr--------lA------------~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk 500 (503)
+|++.+.+++ ++ .+|..+++|++++..|+.+|+++|.|..++..|.+|..
T Consensus 190 e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 190 EIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 2433333221 23 78888999999999999999999999999999988865
No 147
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.99 E-value=0.00011 Score=76.50 Aligned_cols=106 Identities=18% Similarity=0.101 Sum_probs=95.0
Q ss_pred CcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-H
Q 010717 377 AGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN-V 455 (503)
Q Consensus 377 ~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~-~ 455 (503)
...+++.+..++..+....+.+.|+.++.+|+.. ++..+.+-..+|.+++..|+|++|++.++.+++.+|+. .
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ 249 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQA------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLS 249 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh------CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHH
Confidence 3457888999999999999999999999999988 44556677778999999999999999999999999987 5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717 456 SVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488 (503)
Q Consensus 456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen 488 (503)
++.-.+-.||..+|+.++.+..+.++.+..++.
T Consensus 250 evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 250 EVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 688889999999999999999999999988754
No 148
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=4e-05 Score=81.73 Aligned_cols=119 Identities=13% Similarity=0.085 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCh----------------------------hhHHHHHHHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMA----------------------------TMMEVLSTRASCY 431 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddp----------------------------d~A~aysNrAlcy 431 (503)
....+..+|.+++..||+.+|+..|+++..+++..-... ..+.-|+--+...
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l 310 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLL 310 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhh
Confidence 467888999999999999999999999987654221100 1111223234455
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717 432 KEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL 498 (503)
Q Consensus 432 lrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L 498 (503)
+..++|+.|+.+.+|||..+|++.++++.+|.++..+++.++|+-.|+.+..|.|-+.++.+.|..+
T Consensus 311 ~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hs 377 (564)
T KOG1174|consen 311 YDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHS 377 (564)
T ss_pred hhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 7788999999999999999999999999999999999999999999999999999887777766554
No 149
>PRK11906 transcriptional regulator; Provisional
Probab=97.99 E-value=0.00011 Score=79.26 Aligned_cols=105 Identities=13% Similarity=0.018 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 010717 380 TGAAAKNKGVDNQKA---------GQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ 450 (503)
Q Consensus 380 ~A~alk~lGn~~fkq---------GDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL 450 (503)
.+.+|..++.+++.. .+-.+|++.-++|+++ ++.++.++..+|.++...++++.|+..+++|+.+
T Consensus 294 ~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L 367 (458)
T PRK11906 294 KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH 367 (458)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc
Confidence 455666666665543 3466788889999998 6778899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 010717 451 DDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRI 490 (503)
Q Consensus 451 dPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~e 490 (503)
+|+.+.++|.+|.++...|+.++|++.++++++++|-...
T Consensus 368 ~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 368 STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence 9999999999999999999999999999999999997643
No 150
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.97 E-value=0.0002 Score=72.18 Aligned_cols=118 Identities=19% Similarity=0.204 Sum_probs=96.1
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---H
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNV---S 456 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~---k 456 (503)
-+..|++.|...+..|+|.+|++.|++.... .+-.+....+...++.++++.++|++|+..+++-+++.|.++ -
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~---~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY 109 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSR---HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY 109 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH
Confidence 4678999999999999999999999998765 333455578888999999999999999999999999998775 4
Q ss_pred HHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHh
Q 010717 457 VLVQRALLYESMEK--------YKLGAEDLRTVLKIDPSNR---IARSTIHRLTK 500 (503)
Q Consensus 457 AlyrlA~Ay~~LGd--------yeeAle~LqkALkLDPen~---eAk~~La~Lqk 500 (503)
++|.+|.+++..-+ ..+|+..|++.++..|+.+ .++..+..+..
T Consensus 110 ~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d 164 (254)
T COG4105 110 AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLND 164 (254)
T ss_pred HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 78888999766432 5678999999999999884 44444444443
No 151
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.91 E-value=7e-05 Score=75.56 Aligned_cols=73 Identities=12% Similarity=0.010 Sum_probs=64.2
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 010717 421 MEVLSTRASCY-KEVGEYKKAVADCSKVLEQDDTN---VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARS 493 (503)
Q Consensus 421 A~aysNrAlcy-lrLGdyeeALedaekALkLdPd~---~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~ 493 (503)
...+++.+.++ ++.++|++|+..|++.++..|+. +.++|.+|.+|+.+++|++|+..|+++++.+|++.....
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 46677788876 66799999999999999999988 579999999999999999999999999999998744333
No 152
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.88 E-value=0.0002 Score=65.40 Aligned_cols=100 Identities=11% Similarity=0.143 Sum_probs=80.8
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------C
Q 010717 385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDM------ATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ-------D 451 (503)
Q Consensus 385 k~lGn~~fkqGDY~eAIk~YeKALeL~pk~~dd------pd~A~aysNrAlcylrLGdyeeALedaekALkL-------d 451 (503)
...|...+..+-|++|..-|.+|+++..+.+.. ..++-++.-++.++..+|+|+++|...+++|.. +
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~ 92 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH 92 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence 345677788999999999999999997765542 356778888999999999999999999999853 3
Q ss_pred C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717 452 D----TNVSVLVQRALLYESMEKYKLGAEDLRTVLKI 484 (503)
Q Consensus 452 P----d~~kAlyrlA~Ay~~LGdyeeAle~LqkALkL 484 (503)
. .|+.+.+.++.++..+|+.++|+..|+.+-++
T Consensus 93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 3 36788899999999999999999999988764
No 153
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.87 E-value=3.6e-05 Score=83.90 Aligned_cols=106 Identities=17% Similarity=0.156 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEV---GEYKKAVADCSKVLEQDDTNVS 456 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrL---GdyeeALedaekALkLdPd~~k 456 (503)
.++.++..|+..+-......||..|.+++.. .++...+|.||+.++++. ++.-.|+.+|..+|+++|...+
T Consensus 373 ~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~k 446 (758)
T KOG1310|consen 373 NIEKFKTEGNDGLYESIVSGAISHYSRAIQY------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQK 446 (758)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHHhhh------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHH
Confidence 5778888999999999999999999999976 567788999999999884 5678899999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 010717 457 VLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA 491 (503)
Q Consensus 457 AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eA 491 (503)
+||+++.++..++++.+|+++...+....|.+...
T Consensus 447 ah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~ 481 (758)
T KOG1310|consen 447 AHFRLARALNELTRYLEALSCHWALQMSFPTDVAR 481 (758)
T ss_pred HHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhh
Confidence 99999999999999999999998888888855443
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.87 E-value=2.2e-05 Score=64.36 Aligned_cols=67 Identities=34% Similarity=0.379 Sum_probs=58.2
Q ss_pred cCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717 434 VGEYKKAVADCSKVLEQDDT--NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM 501 (503)
Q Consensus 434 LGdyeeALedaekALkLdPd--~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl 501 (503)
.++|++|+..++++++.+|. +...++.+|.||+.+++|++|++.+++ +++++.+..+...+.++.-.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK 70 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999995 466788899999999999999999999 88999888888887776543
No 155
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.84 E-value=0.00024 Score=75.83 Aligned_cols=104 Identities=19% Similarity=0.155 Sum_probs=91.5
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 010717 390 DNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESME 469 (503)
Q Consensus 390 ~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LG 469 (503)
.+-..++|+.|+++|++..+. +| ++...++.+++..++..+|++.++++|+..|.+...+...+..|+..+
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~------~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRER------DP---EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhc------CC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 334567899999999997755 23 356668999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717 470 KYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502 (503)
Q Consensus 470 dyeeAle~LqkALkLDPen~eAk~~La~LqklL 502 (503)
+|+.|++..+++.++.|.+.+....|.++...+
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~ 281 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQL 281 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc
Confidence 999999999999999999999999998887654
No 156
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.82 E-value=0.00013 Score=74.38 Aligned_cols=110 Identities=15% Similarity=0.075 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH--cC--CHHHHHHHHHHHHHcCCCCH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKE--VG--EYKKAVADCSKVLEQDDTNV 455 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylr--LG--dyeeALedaekALkLdPd~~ 455 (503)
..++....-.++++.++++.|.+.++.+.++ . .+ .++.+++.+|+. .| ++.+|...|++.....+.++
T Consensus 130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~----~--eD--~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~ 201 (290)
T PF04733_consen 130 SLELLALAVQILLKMNRPDLAEKELKNMQQI----D--ED--SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTP 201 (290)
T ss_dssp CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC----S--CC--HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SH
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHHHHHhc----C--Cc--HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCH
Confidence 3455555566777777777777766665422 1 11 222333333322 22 34555555555444444445
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010717 456 SVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHR 497 (503)
Q Consensus 456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~ 497 (503)
..+..++.|++.+++|++|.+.++++++.+|.++++...+..
T Consensus 202 ~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv 243 (290)
T PF04733_consen 202 KLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIV 243 (290)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 555555555555555555555555555555555444444433
No 157
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00028 Score=72.33 Aligned_cols=82 Identities=20% Similarity=0.112 Sum_probs=75.1
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHH
Q 010717 417 MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESME---KYKLGAEDLRTVLKIDPSNRIARS 493 (503)
Q Consensus 417 dpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LG---dyeeAle~LqkALkLDPen~eAk~ 493 (503)
+|.+++-|..+|.+|+.++++..|+..|+++++|.|++++.+.-+|.+++... .-.++.+.|+++|++||.|..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 67889999999999999999999999999999999999999999999988764 467899999999999999999888
Q ss_pred HHHHH
Q 010717 494 TIHRL 498 (503)
Q Consensus 494 ~La~L 498 (503)
.|...
T Consensus 232 lLA~~ 236 (287)
T COG4235 232 LLAFA 236 (287)
T ss_pred HHHHH
Confidence 87654
No 158
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.80 E-value=3.6e-05 Score=52.97 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 010717 456 SVLVQRALLYESMEKYKLGAEDLRTVLKIDPS 487 (503)
Q Consensus 456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPe 487 (503)
++|+++|.+|..++++++|+++|+++|+++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45556666666666666666666666666554
No 159
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.80 E-value=0.00056 Score=61.22 Aligned_cols=103 Identities=17% Similarity=0.149 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc-----CC-----------ChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010717 382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKS-----GD-----------MATMMEVLSTRASCYKEVGEYKKAVADCS 445 (503)
Q Consensus 382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~-----~d-----------dpd~A~aysNrAlcylrLGdyeeALedae 445 (503)
..+...+......++...+++.|.+++.+..-. .. ......++..++.+++..+++++|+..++
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 344555777778889999999999999764311 10 12344566778888999999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717 446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKI 484 (503)
Q Consensus 446 kALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkL 484 (503)
+++.++|.+-.+|..+-.+|..+|++.+|++.|+++.+.
T Consensus 87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887543
No 160
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=6.3e-05 Score=79.12 Aligned_cols=134 Identities=14% Similarity=0.054 Sum_probs=87.0
Q ss_pred CCCCcccHHHhCCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHH
Q 010717 360 TDDGGTTTELEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKK 439 (503)
Q Consensus 360 ~d~eaae~eLEaL~~~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyee 439 (503)
+|-.++...++-......+++-+.-.-+|.++|..|||++|+..|+-+.+- +.-.++++.+++.|++-+|.|++
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~------~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK------DDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc------CCCCcccchhHHHHHHHHHHHHH
Confidence 344444444443333333333344445899999999999999999988753 23357889999999999999999
Q ss_pred HHHHHHHHHH--------------cC------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 010717 440 AVADCSKVLE--------------QD------------DTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARS 493 (503)
Q Consensus 440 ALedaekALk--------------Ld------------Pd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~ 493 (503)
|.+...+|-+ ++ -+..+-.+.+|.+++..-.|++|++.|.++|.-+|+...+-.
T Consensus 110 A~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNV 189 (557)
T KOG3785|consen 110 AKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNV 189 (557)
T ss_pred HHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHH
Confidence 9888766421 11 011223344566666666788888888888877776655544
Q ss_pred HHHHHH
Q 010717 494 TIHRLT 499 (503)
Q Consensus 494 ~La~Lq 499 (503)
.++-|.
T Consensus 190 y~ALCy 195 (557)
T KOG3785|consen 190 YMALCY 195 (557)
T ss_pred HHHHHH
Confidence 444443
No 161
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.74 E-value=0.0013 Score=55.55 Aligned_cols=102 Identities=26% Similarity=0.318 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHcCC---CCH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRAS-CYKEVGEYKKAVADCSKVLEQDD---TNV 455 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAl-cylrLGdyeeALedaekALkLdP---d~~ 455 (503)
....+...+..+...+++.+|++.+.+++...+. .......... ++...+++++|+..+++++.+++ ...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 167 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPD------PDLAEALLALGALYELGDYEEALELYEKALELDPELNELA 167 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCC------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchH
Confidence 3455666677777777777777777777754221 1122222333 67777777777777777777665 345
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 010717 456 SVLVQRALLYESMEKYKLGAEDLRTVLKIDPS 487 (503)
Q Consensus 456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPe 487 (503)
..++.++..+...+++++|+..+.+++++.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 168 EALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred HHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 55556666667777777777777777777776
No 162
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.73 E-value=0.00038 Score=62.76 Aligned_cols=72 Identities=19% Similarity=0.184 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHH
Q 010717 422 EVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN---VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPS---NRIARS 493 (503)
Q Consensus 422 ~aysNrAlcylrLGdyeeALedaekALkLdPd~---~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPe---n~eAk~ 493 (503)
.++++++.++-.+|+.++|+..|+++++..... ..+++.+|.+|..+|++++|+..|++++...|+ +..++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~ 79 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRV 79 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHH
Confidence 478899999999999999999999999975433 669999999999999999999999999999888 544443
No 163
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.72 E-value=7.5e-05 Score=50.78 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717 456 SVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488 (503)
Q Consensus 456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen 488 (503)
++++.+|.+|+.++++++|+++|+++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 566667777777777777777777777776654
No 164
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.71 E-value=0.00016 Score=73.85 Aligned_cols=103 Identities=17% Similarity=0.226 Sum_probs=81.2
Q ss_pred HHHHHHHhC--CHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 010717 387 KGVDNQKAG--QYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALL 464 (503)
Q Consensus 387 lGn~~fkqG--DY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~A 464 (503)
.+.+.+..| ++.+|...|++..+. .+....+++.++.|++.+|+|++|.+.+++++..+|.++.++.++..+
T Consensus 171 ~awv~l~~g~e~~~~A~y~f~El~~~------~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~ 244 (290)
T PF04733_consen 171 EAWVNLATGGEKYQDAFYIFEELSDK------FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVC 244 (290)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHCC------S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHH
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHhc------cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 344555555 599999999996432 233467888999999999999999999999999999999999999999
Q ss_pred HHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHH
Q 010717 465 YESMEKY-KLGAEDLRTVLKIDPSNRIARSTI 495 (503)
Q Consensus 465 y~~LGdy-eeAle~LqkALkLDPen~eAk~~L 495 (503)
...+|+. +.+.+.+.++.+.+|+++.+....
T Consensus 245 ~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~ 276 (290)
T PF04733_consen 245 SLHLGKPTEAAERYLSQLKQSNPNHPLVKDLA 276 (290)
T ss_dssp HHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHH
T ss_pred HHHhCCChhHHHHHHHHHHHhCCCChHHHHHH
Confidence 9999998 667778888888999997665443
No 165
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.70 E-value=0.00022 Score=70.42 Aligned_cols=81 Identities=23% Similarity=0.264 Sum_probs=70.5
Q ss_pred CCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 010717 375 PPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN 454 (503)
Q Consensus 375 ~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~ 454 (503)
...+.+..+|.+.|.++.+++.++.||+-+.+||+| .|.+..++..||.+|-++.+|++|+++|+++++++|..
T Consensus 128 ~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel------~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 128 TSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL------NPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred ccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc------CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 344557778889999999999999999999999999 66778899999999999999999999999999999987
Q ss_pred HHHHHHH
Q 010717 455 VSVLVQR 461 (503)
Q Consensus 455 ~kAlyrl 461 (503)
.++.-.+
T Consensus 202 ~ear~~i 208 (271)
T KOG4234|consen 202 REAREAI 208 (271)
T ss_pred HHHHHHH
Confidence 6554433
No 166
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.70 E-value=0.00016 Score=77.34 Aligned_cols=105 Identities=13% Similarity=0.070 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCC
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD------DTN 454 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd------Pd~ 454 (503)
-.++.++|+++.-.++|+.|+++|++++.|.-+.++....+..++.++..|.-+.++++||.+.++-|++. -..
T Consensus 235 RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe 314 (639)
T KOG1130|consen 235 RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGE 314 (639)
T ss_pred HHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44678899999999999999999999998877777777788889999999999999999999999877664 234
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 010717 455 VSVLVQRALLYESMEKYKLGAEDLRTVLKID 485 (503)
Q Consensus 455 ~kAlyrlA~Ay~~LGdyeeAle~LqkALkLD 485 (503)
..+|+.+|.+|..+++.++|+...+..+++.
T Consensus 315 ~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 315 LRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 7799999999999999999998888777653
No 167
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.70 E-value=8.1e-05 Score=54.76 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010717 457 VLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIH 496 (503)
Q Consensus 457 AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La 496 (503)
+++.+|.+|..+|++++|++.|+++++++|++.++...+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4445555555555555555555555555555555444443
No 168
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.68 E-value=6.3e-05 Score=51.71 Aligned_cols=34 Identities=26% Similarity=0.457 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 010717 421 MEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN 454 (503)
Q Consensus 421 A~aysNrAlcylrLGdyeeALedaekALkLdPd~ 454 (503)
+.+|+++|.||+.++++++|+.+|+++|+++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3578899999999999999999999999999863
No 169
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.67 E-value=0.00034 Score=77.77 Aligned_cols=100 Identities=15% Similarity=0.186 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
...+|..+|..+...++|.+||++|+.|+.+ ++++..+|..++....++++|+..+..-.+.++++|.....|+
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~ 147 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKI------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWI 147 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHH
Confidence 4568888999999999999999999999988 6677889999999999999999999999999999999988999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLKID 485 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALkLD 485 (503)
..+.++..+++|..|+..++...+..
T Consensus 148 ~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 148 GFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999988887776655
No 170
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.64 E-value=8.7e-05 Score=85.46 Aligned_cols=113 Identities=14% Similarity=0.061 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
....+..+|..|...+++.+|+..|+.|+.. +|.+..+|..++.+|.+.|+|.-|++.++++..++|.+.-+.|
T Consensus 561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~------dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~f 634 (1238)
T KOG1127|consen 561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRT------DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRF 634 (1238)
T ss_pred HHhhhhhccccccCccchhhHHHHHHHHhcC------CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHH
Confidence 3445666899999999999999999999988 6778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL 498 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L 498 (503)
..+.+...+|+|++|+..+...++......-.+..+.++
T Consensus 635 k~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~ 673 (1238)
T KOG1127|consen 635 KEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAES 673 (1238)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 999999999999999999999988766555555555444
No 171
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.63 E-value=0.00031 Score=75.22 Aligned_cols=106 Identities=14% Similarity=0.128 Sum_probs=87.2
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC-----CCh---h----hHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010717 379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSG-----DMA---T----MMEVLSTRASCYKEVGEYKKAVADCSK 446 (503)
Q Consensus 379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~-----ddp---d----~A~aysNrAlcylrLGdyeeALedaek 446 (503)
+..++....+..+|++++|..|+..|..||+++.+-. ..+ + ...+...+..||+++++.+-|+....+
T Consensus 174 kwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hr 253 (569)
T PF15015_consen 174 KWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHR 253 (569)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhh
Confidence 3455666778889999999999999999999987521 111 1 122456789999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717 447 VLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKI 484 (503)
Q Consensus 447 ALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkL 484 (503)
+|.++|.+..-|+++|.|+..|.+|.+|.+.+.-+.-+
T Consensus 254 sI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ym 291 (569)
T PF15015_consen 254 SINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYM 291 (569)
T ss_pred hhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998877665544
No 172
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.62 E-value=0.00061 Score=75.02 Aligned_cols=97 Identities=15% Similarity=0.135 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ 460 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr 460 (503)
.-+++.++..|-..|+|++|+++.++||+. .|...++|...|.+|.+.|++++|.+.++.|..+|..+--.--.
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK 267 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEH------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSK 267 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHH
Confidence 445677788888888888888888888877 56667888888888888888888888888888888777666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 010717 461 RALLYESMEKYKLGAEDLRTVLK 483 (503)
Q Consensus 461 lA~Ay~~LGdyeeAle~LqkALk 483 (503)
.+..+.+.+++++|++.+..-.+
T Consensus 268 ~aKy~LRa~~~e~A~~~~~~Ftr 290 (517)
T PF12569_consen 268 CAKYLLRAGRIEEAEKTASLFTR 290 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhcC
Confidence 67777788888888877754433
No 173
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.59 E-value=0.00016 Score=53.17 Aligned_cols=43 Identities=19% Similarity=0.171 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 010717 422 EVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALL 464 (503)
Q Consensus 422 ~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~A 464 (503)
.++..++.+|.++|++++|++.|+++++++|+++.+++.++.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 4788899999999999999999999999999999999998753
No 174
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.58 E-value=0.00048 Score=76.97 Aligned_cols=119 Identities=15% Similarity=0.022 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-------------Ch--------------hhHHHHHHHHHHHHHcC
Q 010717 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGD-------------MA--------------TMMEVLSTRASCYKEVG 435 (503)
Q Consensus 383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~d-------------dp--------------d~A~aysNrAlcylrLG 435 (503)
.+...+..+...||..+|..++.+|++..+...+ +. -...+|...+.....++
T Consensus 586 lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld 665 (913)
T KOG0495|consen 586 LWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLD 665 (913)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhh
Confidence 3444567777788888888877777765332110 11 12345666666677799
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717 436 EYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM 501 (503)
Q Consensus 436 dyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl 501 (503)
+.++|++.|++||+..|+..+.|+.+|+++..+++.+.|.+.|...+++-|...-....|.+|++.
T Consensus 666 ~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk 731 (913)
T KOG0495|consen 666 NVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK 731 (913)
T ss_pred hHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988887777777654
No 175
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.58 E-value=0.00018 Score=80.79 Aligned_cols=100 Identities=12% Similarity=0.116 Sum_probs=95.3
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
....|+..|.++.+.+++..|+++|..++.+ +|+.++.|+|++..|+++++-.+|...+++|++.+-.+.+.|.
T Consensus 518 q~~~wf~~G~~ALqlek~q~av~aF~rcvtL------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWE 591 (777)
T KOG1128|consen 518 QLGTWFGLGCAALQLEKEQAAVKAFHRCVTL------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWE 591 (777)
T ss_pred chhHHHhccHHHHHHhhhHHHHHHHHHHhhc------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeee
Confidence 5678999999999999999999999999998 7889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLKID 485 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALkLD 485 (503)
+.-.+....+++++|++.|.+.+.+.
T Consensus 592 Nymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 592 NYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred chhhhhhhcccHHHHHHHHHHHHHhh
Confidence 99999999999999999999998864
No 176
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.55 E-value=0.0029 Score=53.50 Aligned_cols=95 Identities=23% Similarity=0.377 Sum_probs=65.4
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHc
Q 010717 390 DNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT-NVSVLVQRALLYESM 468 (503)
Q Consensus 390 ~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd-~~kAlyrlA~Ay~~L 468 (503)
.++..+++++|+..|.+++.+.+. .......+..+...+...+++++|+..+.+++++.+. ....+..++.++...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPE---LNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC---ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 677777777777777777553110 0134455555556566777777777777777777777 577777777777777
Q ss_pred CCHHHHHHHHHHHHHhCCC
Q 010717 469 EKYKLGAEDLRTVLKIDPS 487 (503)
Q Consensus 469 GdyeeAle~LqkALkLDPe 487 (503)
+++++|+..+.+++.+.|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 216 GKYEEALEYYEKALELDPD 234 (291)
T ss_pred ccHHHHHHHHHHHHhhCcc
Confidence 7777777777777777776
No 177
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.00096 Score=73.76 Aligned_cols=101 Identities=18% Similarity=0.206 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
...+++-.-.++.+..+|++|++.-++-..+ .......+..+.|++++++.++|+..++ -+++.+.+.+.
T Consensus 45 d~~a~~cKvValIq~~ky~~ALk~ikk~~~~-------~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~ 114 (652)
T KOG2376|consen 45 DEDAIRCKVVALIQLDKYEDALKLIKKNGAL-------LVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLE 114 (652)
T ss_pred cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh-------hhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHH
Confidence 3556666666777888888888544332211 1122333789999999999999999998 56777788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRI 490 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~e 490 (503)
.+|++++.+++|++|+..|+..++-+-++.+
T Consensus 115 L~AQvlYrl~~ydealdiY~~L~kn~~dd~d 145 (652)
T KOG2376|consen 115 LRAQVLYRLERYDEALDIYQHLAKNNSDDQD 145 (652)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence 9999999999999999999999887665543
No 178
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.53 E-value=0.00021 Score=80.75 Aligned_cols=120 Identities=33% Similarity=0.499 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCCHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKE--VGEYKKAVADCSKVLEQDDTNVSV 457 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylr--LGdyeeALedaekALkLdPd~~kA 457 (503)
++..++..++..+..++|.+|...|..++.+.|+ +....+.++.+++.||+. +++|.+++.+|+.|+...|...++
T Consensus 52 ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~--~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~ 129 (748)
T KOG4151|consen 52 RALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPK--DHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKA 129 (748)
T ss_pred HHHHHHhhhhHHhhhhhhhccchhhhhhheeccc--cchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHH
Confidence 5667888999999999999999999999999774 356788899999999977 568999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717 458 LVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM 501 (503)
Q Consensus 458 lyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl 501 (503)
+++++.+|..+++++-|++.+.-...++|.++.+-..+.+++.+
T Consensus 130 Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~l 173 (748)
T KOG4151|consen 130 LLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGL 173 (748)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999997776655555544
No 179
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.50 E-value=0.00023 Score=48.37 Aligned_cols=34 Identities=29% Similarity=0.433 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 010717 421 MEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN 454 (503)
Q Consensus 421 A~aysNrAlcylrLGdyeeALedaekALkLdPd~ 454 (503)
+++|..+|.+++++|++++|+++|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3578888999999999999999999999988864
No 180
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.49 E-value=0.00074 Score=74.35 Aligned_cols=72 Identities=24% Similarity=0.324 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 010717 421 MEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIAR 492 (503)
Q Consensus 421 A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk 492 (503)
..+++.+|.+|..+|++++|++++++||++.|..++.|+.+|.+|.+.|++++|.++++++..+|..+.-+-
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiN 265 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYIN 265 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHH
Confidence 456688999999999999999999999999999999999999999999999999999999999999886543
No 181
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.47 E-value=0.0016 Score=63.89 Aligned_cols=104 Identities=14% Similarity=0.082 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT--NVSV 457 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd--~~kA 457 (503)
..+-.+.+++.+...|+|.||...|++++.= --.++..++..++...+.++++.+|...+++..+.+|. .+..
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG-----~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSG-----IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-----ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 3556778999999999999999999999852 13456788899999999999999999999999999874 4778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717 458 LVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488 (503)
Q Consensus 458 lyrlA~Ay~~LGdyeeAle~LqkALkLDPen 488 (503)
++.++.+|..+|++++|...|+.++.-.|+-
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~ 193 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPGP 193 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence 8899999999999999999999999998864
No 182
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.47 E-value=0.00013 Score=51.58 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=28.0
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010717 444 CSKVLEQDDTNVSVLVQRALLYESMEKYKLGAE 476 (503)
Q Consensus 444 aekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle 476 (503)
|+++|+++|+++.+|+++|.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678888888888888888888888888888863
No 183
>PRK10941 hypothetical protein; Provisional
Probab=97.43 E-value=0.0013 Score=66.87 Aligned_cols=82 Identities=16% Similarity=0.255 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717 420 MMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT 499 (503)
Q Consensus 420 ~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq 499 (503)
....+.|+=.+|++.+++++|+.+++.++.++|+++.-+.-+|.+|.+++.+..|+.+|+..++..|+++.+.....+++
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 34677888999999999999999999999999999999999999999999999999999999999999988776666665
Q ss_pred hh
Q 010717 500 KM 501 (503)
Q Consensus 500 kl 501 (503)
.+
T Consensus 260 ~l 261 (269)
T PRK10941 260 SI 261 (269)
T ss_pred HH
Confidence 44
No 184
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.42 E-value=0.0016 Score=74.19 Aligned_cols=105 Identities=14% Similarity=0.062 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------
Q 010717 382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT-------- 453 (503)
Q Consensus 382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd-------- 453 (503)
..+..+|..+...|++++|+.+|++++++....+.......++.+++.+++..|++++|++.+++++.+...
T Consensus 492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 571 (903)
T PRK04841 492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM 571 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence 345667777888888888888888888876654443444556778888888889999998888888876321
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717 454 NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDP 486 (503)
Q Consensus 454 ~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP 486 (503)
....+..+|.+++..|++++|.+.+++++.+..
T Consensus 572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 123455678888888888888888888877643
No 185
>PRK15331 chaperone protein SicA; Provisional
Probab=97.41 E-value=0.00083 Score=63.96 Aligned_cols=84 Identities=11% Similarity=-0.006 Sum_probs=73.8
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010717 417 MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIH 496 (503)
Q Consensus 417 dpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La 496 (503)
..+..+..+.+|.-++..|++++|...|+-...+++.+.+.++.+|.|+..+++|++|++.|-.+..++++++.......
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 34556677778999999999999999999999999999999999999999999999999999999999998876666666
Q ss_pred HHHh
Q 010717 497 RLTK 500 (503)
Q Consensus 497 ~Lqk 500 (503)
+|.-
T Consensus 113 qC~l 116 (165)
T PRK15331 113 QCQL 116 (165)
T ss_pred HHHH
Confidence 5543
No 186
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.39 E-value=0.00042 Score=73.22 Aligned_cols=106 Identities=15% Similarity=0.134 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCC-
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD-----DTN- 454 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd-----Pd~- 454 (503)
.+.+..+++.+.-.+.|+++++.|++|+.+.....|......++..++..+-++.|+++|+-+..+|.++- .+|
T Consensus 122 gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~ 201 (518)
T KOG1941|consen 122 GQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWS 201 (518)
T ss_pred chhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchh
Confidence 35666789999999999999999999999988777777778899999999999999999999999999873 122
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717 455 ----VSVLVQRALLYESMEKYKLGAEDLRTVLKIDP 486 (503)
Q Consensus 455 ----~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP 486 (503)
.-++|+++.+|..+|+.-+|.++++++.+|.-
T Consensus 202 ~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal 237 (518)
T KOG1941|consen 202 LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL 237 (518)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 23678899999999999999999999988753
No 187
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.38 E-value=0.001 Score=62.00 Aligned_cols=71 Identities=13% Similarity=0.162 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 010717 421 MEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN---VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIA 491 (503)
Q Consensus 421 A~aysNrAlcylrLGdyeeALedaekALkLdPd~---~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eA 491 (503)
...++..|...++.|+|++|++.++.+....|.. .++.+.++-+|+..++|++|+..+++-++|+|.++.+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 4667789999999999999999999999988754 6799999999999999999999999999999998654
No 188
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.0023 Score=70.90 Aligned_cols=107 Identities=17% Similarity=0.169 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH------------------------HHhcCC-ChhhHHHHHHHHHHHHHcCCH
Q 010717 383 AAKNKGVDNQKAGQYADAIKWLSWAVIL------------------------LEKSGD-MATMMEVLSTRASCYKEVGEY 437 (503)
Q Consensus 383 alk~lGn~~fkqGDY~eAIk~YeKALeL------------------------~pk~~d-dpd~A~aysNrAlcylrLGdy 437 (503)
.+...+.++|+.++|++|++.|+..++- .+..+. ..+..+.++|+|.+++..|+|
T Consensus 112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky 191 (652)
T KOG2376|consen 112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY 191 (652)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence 5667899999999999999999887521 111111 234678899999999999999
Q ss_pred HHHHHHHHHHHHcC-------C---CC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 010717 438 KKAVADCSKVLEQD-------D---TN-----VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNR 489 (503)
Q Consensus 438 eeALedaekALkLd-------P---d~-----~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~ 489 (503)
.+|++.+++++++. . +. ......++.+|..+|+-++|...|...++.+|.+.
T Consensus 192 ~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 192 NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence 99999999995542 1 11 12566789999999999999999999999998774
No 189
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.36 E-value=0.002 Score=72.21 Aligned_cols=113 Identities=10% Similarity=0.001 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 010717 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRA 462 (503)
Q Consensus 383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA 462 (503)
.++.-.+....+++.++|+++++++|+. -|++..+|..+|.++-++++.+.|.+.|...++..|..+..|+.++
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~------fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLa 726 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKS------FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLA 726 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHh------CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHH
Confidence 4444555556678888999999999887 5678899999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717 463 LLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM 501 (503)
Q Consensus 463 ~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl 501 (503)
.+-...++.-+|...|+++...+|++.....+..+++..
T Consensus 727 kleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR 765 (913)
T KOG0495|consen 727 KLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELR 765 (913)
T ss_pred HHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 999999999999999999999999998877776666543
No 190
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.32 E-value=0.004 Score=61.25 Aligned_cols=109 Identities=14% Similarity=0.159 Sum_probs=78.7
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHhcC-CChhhHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHcCC------CCH
Q 010717 390 DNQKAGQYADAIKWLSWAVILLEKSG-DMATMMEVLSTRASCYKEVGEYK-------KAVADCSKVLEQDD------TNV 455 (503)
Q Consensus 390 ~~fkqGDY~eAIk~YeKALeL~pk~~-ddpd~A~aysNrAlcylrLGdye-------eALedaekALkLdP------d~~ 455 (503)
.+-....+++|++.|..||....-.. +.-..+.++..+|.+|..+++.+ +|++.|+++++... +..
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 34456689999999999987655332 33356888899999999999954 45555555554432 226
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHH
Q 010717 456 SVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNR--IARSTIHRL 498 (503)
Q Consensus 456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~--eAk~~La~L 498 (503)
..+|.+|.+++.+|++++|+++|.+++..--... .+....+++
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~ 210 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQ 210 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 7899999999999999999999999998755444 444444443
No 191
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.32 E-value=0.0035 Score=61.45 Aligned_cols=103 Identities=15% Similarity=0.011 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-HHHHHH
Q 010717 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNV-SVLVQR 461 (503)
Q Consensus 383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~-kAlyrl 461 (503)
....++..++..+++++|+..+++++.. ..++.....+-.+++.+.+.++.+++|+..++..-. +.|. .....+
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elr 165 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELR 165 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHh
Confidence 3466789999999999999999999965 122334455667899999999999999998876543 3343 345667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 010717 462 ALLYESMEKYKLGAEDLRTVLKIDPSNRI 490 (503)
Q Consensus 462 A~Ay~~LGdyeeAle~LqkALkLDPen~e 490 (503)
|.+|...|+-++|+..|+++++.++....
T Consensus 166 GDill~kg~k~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 166 GDILLAKGDKQEARAAYEKALESDASPAA 194 (207)
T ss_pred hhHHHHcCchHHHHHHHHHHHHccCChHH
Confidence 99999999999999999999999855544
No 192
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.30 E-value=0.0018 Score=70.22 Aligned_cols=104 Identities=14% Similarity=0.058 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
.+--+...|..+..+++.++|++.|+++++..... .....-+++.++.|++.+.+|++|.+++.++++.. .|.++.|
T Consensus 266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~--~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y 342 (468)
T PF10300_consen 266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSEW--KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFY 342 (468)
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH--HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHH
Confidence 35557778999999999999999999998642222 23445678899999999999999999999999865 6877665
Q ss_pred H--HHHHHHHcCCH-------HHHHHHHHHHHHhCC
Q 010717 460 Q--RALLYESMEKY-------KLGAEDLRTVLKIDP 486 (503)
Q Consensus 460 r--lA~Ay~~LGdy-------eeAle~LqkALkLDP 486 (503)
. .|.||..+++. ++|.+.|+++-.+-.
T Consensus 343 ~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 343 AYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 5 58999999999 888888888766543
No 193
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.28 E-value=0.0011 Score=52.03 Aligned_cols=46 Identities=22% Similarity=0.241 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717 456 SVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM 501 (503)
Q Consensus 456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl 501 (503)
+.+|.+|.+++++++|++|+++++.+|+++|+|.++......+++.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~ 47 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDK 47 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 4578888889999999999999999999999988887777776654
No 194
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.0014 Score=69.42 Aligned_cols=87 Identities=20% Similarity=0.262 Sum_probs=71.6
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 010717 389 VDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESM 468 (503)
Q Consensus 389 n~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~L 468 (503)
..+....||..|+.+++-.+.+..+ +.+...+| ++.|++++|+|++|+..|+.+..-+..+.+...++|-|++.+
T Consensus 30 edfls~rDytGAislLefk~~~~~E---EE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyL 104 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDRE---EEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYL 104 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchh---hhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHH
Confidence 4567889999999999988866332 22334444 699999999999999999999887777899999999999999
Q ss_pred CCHHHHHHHHHH
Q 010717 469 EKYKLGAEDLRT 480 (503)
Q Consensus 469 GdyeeAle~Lqk 480 (503)
|.|.+|...-.+
T Consensus 105 g~Y~eA~~~~~k 116 (557)
T KOG3785|consen 105 GQYIEAKSIAEK 116 (557)
T ss_pred HHHHHHHHHHhh
Confidence 999999876554
No 195
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.27 E-value=0.0015 Score=61.06 Aligned_cols=62 Identities=18% Similarity=0.175 Sum_probs=57.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717 427 RASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488 (503)
Q Consensus 427 rAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen 488 (503)
-+..+.+-|+++.|++.|.++|.+.|..+.+|.+++++|...++.++|++++.++|++.-..
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ 110 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence 46677789999999999999999999999999999999999999999999999999996543
No 196
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.26 E-value=0.00084 Score=77.67 Aligned_cols=128 Identities=15% Similarity=0.131 Sum_probs=100.5
Q ss_pred HhCCCCCCCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-------------C-----------------h
Q 010717 369 LEGLPPPPAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGD-------------M-----------------A 418 (503)
Q Consensus 369 LEaL~~~~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~d-------------d-----------------p 418 (503)
+.+++..+. .+.++..+|..|...-|...|.++|.+|.+++...-. + .
T Consensus 482 i~alrld~~--~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~ 559 (1238)
T KOG1127|consen 482 IRALRLDVS--LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAF 559 (1238)
T ss_pred HHHHhcccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHH
Confidence 344433333 5778888999998888889999999999888542110 0 0
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717 419 TMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL 498 (503)
Q Consensus 419 d~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L 498 (503)
.....|..||..|++.+++.+|+.+++.+++.+|.+...|.-+|.+|...|+|.-|+..|.++..++|.+...+.....+
T Consensus 560 ~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ 639 (1238)
T KOG1127|consen 560 ACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVM 639 (1238)
T ss_pred HHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHH
Confidence 11223556888899999999999999999999999999999999999999999999999999999999986655444443
No 197
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.25 E-value=0.00043 Score=72.83 Aligned_cols=65 Identities=22% Similarity=0.342 Sum_probs=60.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717 424 LSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488 (503)
Q Consensus 424 ysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen 488 (503)
+-.+|.-|+++|.|++||.+|.+++.++|.++..+.++|.+|+.+++|..|..+|..++.||...
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y 164 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY 164 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence 45688999999999999999999999999999999999999999999999999999999998644
No 198
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.0021 Score=71.73 Aligned_cols=104 Identities=12% Similarity=0.103 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 010717 382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQR 461 (503)
Q Consensus 382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrl 461 (503)
..+.+.+...|+.++|..++++|...+..++.+..+.+++.+..+++.||+.+.++++|++++++|-+.+|..+-..+..
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 34667788899999999999999999998877666667788999999999999999999999999999999988777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Q 010717 462 ALLYESMEKYKLGAEDLRTVLKID 485 (503)
Q Consensus 462 A~Ay~~LGdyeeAle~LqkALkLD 485 (503)
-.+....+.-++|+.++.+.+.+.
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhhh
Confidence 777777888899999988777654
No 199
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.18 E-value=0.0057 Score=69.73 Aligned_cols=106 Identities=15% Similarity=-0.046 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDM--ATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT----- 453 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~dd--pd~A~aysNrAlcylrLGdyeeALedaekALkLdPd----- 453 (503)
+..+..++.+++..|++++|.+++++++++....... +....++..++.+++..|++++|++.+++++.+...
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 610 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ 610 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH
Confidence 3455677889999999999999999999987654321 223455678899999999999999999999886432
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717 454 NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDP 486 (503)
Q Consensus 454 ~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP 486 (503)
...++..++.++...|++++|.+.+++++.+..
T Consensus 611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 611 QLQCLAMLAKISLARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 245666789999999999999999999988744
No 200
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.15 E-value=0.002 Score=64.53 Aligned_cols=77 Identities=19% Similarity=0.228 Sum_probs=71.3
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 010717 417 MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARS 493 (503)
Q Consensus 417 dpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~ 493 (503)
+...+.+++.||..|-.+|-..-|.-|+.++|.+.|+.+.++..+|.-|...++|+.|.+.|..++++||...-+..
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~l 137 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHL 137 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999998765543
No 201
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.12 E-value=0.0019 Score=71.18 Aligned_cols=73 Identities=12% Similarity=0.028 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ 460 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr 460 (503)
+..+..+|..+...+++++|+..|++|+++ .+ .+.+|..+|.++...|++++|++.|++|+.++|.++..+..
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L------~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~~ 492 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDL------EM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYWI 492 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHHH
Confidence 567777888999999999999999999999 44 36899999999999999999999999999999998864443
No 202
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.09 E-value=0.0039 Score=63.38 Aligned_cols=77 Identities=14% Similarity=0.024 Sum_probs=68.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 010717 424 LSTRASCYKEVGEYKKAVADCSKVLEQDDTN---VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN---RIARSTIHR 497 (503)
Q Consensus 424 ysNrAlcylrLGdyeeALedaekALkLdPd~---~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen---~eAk~~La~ 497 (503)
+++.|.-+++.|+|.+|...|..-|+..|+. +.++|-||.+++.+|+|++|...|..+++-.|++ +++...|..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7889999999999999999999999999876 6799999999999999999999999999999987 455555555
Q ss_pred HHh
Q 010717 498 LTK 500 (503)
Q Consensus 498 Lqk 500 (503)
++.
T Consensus 224 ~~~ 226 (262)
T COG1729 224 SLG 226 (262)
T ss_pred HHH
Confidence 543
No 203
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.08 E-value=0.00096 Score=73.89 Aligned_cols=104 Identities=15% Similarity=0.076 Sum_probs=89.4
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 010717 390 DNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESME 469 (503)
Q Consensus 390 ~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LG 469 (503)
.+...|+-..|++++..|+.+.|. ....-+.+++.+.++-+-.-+|-..+.++|.+.-..+-.+|.+|.+|..++
T Consensus 616 ywr~~gn~~~a~~cl~~a~~~~p~-----~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~ 690 (886)
T KOG4507|consen 616 YWRAVGNSTFAIACLQRALNLAPL-----QQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALK 690 (886)
T ss_pred eeeecCCcHHHHHHHHHHhccChh-----hhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHh
Confidence 344578999999999999977332 123457789999999998899999999999999777889999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717 470 KYKLGAEDLRTVLKIDPSNRIARSTIHRL 498 (503)
Q Consensus 470 dyeeAle~LqkALkLDPen~eAk~~La~L 498 (503)
+.++|++.|+.+++++|++.+++..|..+
T Consensus 691 ~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 691 NISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred hhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 99999999999999999999998877654
No 204
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.07 E-value=0.00096 Score=45.56 Aligned_cols=31 Identities=19% Similarity=0.428 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717 456 SVLVQRALLYESMEKYKLGAEDLRTVLKIDP 486 (503)
Q Consensus 456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP 486 (503)
++|+.+|.+|..+|++++|+++|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3455555555555555555555555555555
No 205
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.00 E-value=0.0011 Score=45.23 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 010717 422 EVLSTRASCYKEVGEYKKAVADCSKVLEQDDT 453 (503)
Q Consensus 422 ~aysNrAlcylrLGdyeeALedaekALkLdPd 453 (503)
.+|..+|.+|..+|++++|++++++|++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57778888888888888888888888888774
No 206
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.0013 Score=68.29 Aligned_cols=96 Identities=19% Similarity=0.177 Sum_probs=79.0
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC
Q 010717 379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ----DDTN 454 (503)
Q Consensus 379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL----dPd~ 454 (503)
..++.+.+.|...|+.++|++|++.|+.|++. .....-+-+++++|+++.++|+.|+++..+.++. +|+.
T Consensus 142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqv------sGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPEl 215 (459)
T KOG4340|consen 142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQV------SGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPEL 215 (459)
T ss_pred CccchhccchheeeccccHHHHHHHHHHHHhh------cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCcc
Confidence 35778999999999999999999999999988 3334467788999999999999999999887753 2321
Q ss_pred -------------------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010717 455 -------------------------VSVLVQRALLYESMEKYKLGAEDLRT 480 (503)
Q Consensus 455 -------------------------~kAlyrlA~Ay~~LGdyeeAle~Lqk 480 (503)
.+++..++.+++..++++.|.+.+..
T Consensus 216 gIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD 266 (459)
T KOG4340|consen 216 GIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD 266 (459)
T ss_pred CccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc
Confidence 24566679999999999999988754
No 207
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.98 E-value=0.002 Score=70.30 Aligned_cols=123 Identities=15% Similarity=0.091 Sum_probs=97.4
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC----CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----
Q 010717 379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSG----DMATMMEVLSTRASCYKEVGEYKKAVADCSKVLE----- 449 (503)
Q Consensus 379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~----ddpd~A~aysNrAlcylrLGdyeeALedaekALk----- 449 (503)
..+..+..+.+.+|..|+|..|++.+...=.. ...+ .+-....+|+|+|.++++++.|.-+..+|.+||+
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~-~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~q 316 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIH-KEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQ 316 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccc-cccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHH
Confidence 35677888999999999999999987543211 1111 0112455678999999999999999999999995
Q ss_pred c----CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717 450 Q----DD---------TNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502 (503)
Q Consensus 450 L----dP---------d~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL 502 (503)
+ .| ..-+.+|+.|..|...|+.-+|.++|+++.+..-.++.+...|++|..+.
T Consensus 317 L~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 317 LRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 1 11 12458999999999999999999999999999999999999999987653
No 208
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.95 E-value=0.006 Score=68.41 Aligned_cols=64 Identities=11% Similarity=0.074 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717 421 MEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKI 484 (503)
Q Consensus 421 A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkL 484 (503)
..+|..+...+...|+++.|.+.++++++++|++...|..+..+|...|++++|.+.++++.+.
T Consensus 494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 3456666666667777777777777777788877777778888888888888888888776654
No 209
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.0013 Score=66.34 Aligned_cols=76 Identities=21% Similarity=0.206 Sum_probs=68.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717 424 LSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT 499 (503)
Q Consensus 424 ysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq 499 (503)
+-.-+.+|+.-++|..|+..|.++|.++|..+..+-+++.||+++++++.+.+.++++++++|+.+..+..+..+.
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL 88 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 3445778888899999999999999999999999999999999999999999999999999999888777776554
No 210
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.011 Score=60.63 Aligned_cols=79 Identities=14% Similarity=0.140 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010717 422 EVLSTRASCYKEV----GEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHR 497 (503)
Q Consensus 422 ~aysNrAlcylrL----GdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~ 497 (503)
..+..+|..|+.+ +++.+|.-.|+..-...+-.+..+..++.|++.+++|++|...++++|..++.+++....+..
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv 249 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIV 249 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 4455566666542 346666666666555445556667777888888888888888888888888888877766665
Q ss_pred HHh
Q 010717 498 LTK 500 (503)
Q Consensus 498 Lqk 500 (503)
+-.
T Consensus 250 ~a~ 252 (299)
T KOG3081|consen 250 LAL 252 (299)
T ss_pred HHH
Confidence 543
No 211
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.87 E-value=0.00092 Score=47.27 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHH
Q 010717 403 WLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVA 442 (503)
Q Consensus 403 ~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALe 442 (503)
+|++||++ +|.++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~------~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL------NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHH------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 48999999 77889999999999999999999974
No 212
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0052 Score=64.47 Aligned_cols=75 Identities=20% Similarity=0.252 Sum_probs=64.6
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 010717 418 ATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN----VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIAR 492 (503)
Q Consensus 418 pd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~----~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk 492 (503)
...+.-|-.-|.-|++.++|..|+..|.+.|+..-.+ +..|.++|.|.+.+|+|..|+.++.++++++|.+..+.
T Consensus 78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~ 156 (390)
T KOG0551|consen 78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAY 156 (390)
T ss_pred HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhh
Confidence 3466778888999999999999999999999875333 44677899999999999999999999999999986553
No 213
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.76 E-value=0.0025 Score=42.81 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717 456 SVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488 (503)
Q Consensus 456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen 488 (503)
+++|++|.+|..+|++++|++.|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 367777777777777777777777777777753
No 214
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.69 E-value=0.044 Score=58.56 Aligned_cols=113 Identities=18% Similarity=0.161 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT-NVSVL 458 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd-~~kAl 458 (503)
++..+...|...+-.|||.+|.+...++-+. .+....+|..-+.+.-++|+++.|-.++.++-++.++ ..-+.
T Consensus 83 ra~~~~~egl~~l~eG~~~qAEkl~~rnae~------~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ 156 (400)
T COG3071 83 RARKALNEGLLKLFEGDFQQAEKLLRRNAEH------GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVE 156 (400)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhhhc------CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHH
Confidence 3444555555555566666666655554433 1112233333444445555555555555555555322 23344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717 459 VQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL 498 (503)
Q Consensus 459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L 498 (503)
+.++.++...++|+.|.+.+.++++..|.++++.....++
T Consensus 157 ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~ 196 (400)
T COG3071 157 LTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRA 196 (400)
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHH
Confidence 4555555555555555555555555555555555544444
No 215
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.69 E-value=0.019 Score=68.42 Aligned_cols=62 Identities=13% Similarity=0.056 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717 422 EVLSTRASCYKEVGEYKKAVADCSKVLEQD-DTNVSVLVQRALLYESMEKYKLGAEDLRTVLK 483 (503)
Q Consensus 422 ~aysNrAlcylrLGdyeeALedaekALkLd-Pd~~kAlyrlA~Ay~~LGdyeeAle~LqkALk 483 (503)
..|..+..+|.+.|++++|++.|++..+.. ..+...|..+..+|...|++++|++.|+++.+
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345555555555555555555555544321 11334455555555555555555555555543
No 216
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.68 E-value=0.019 Score=54.79 Aligned_cols=104 Identities=14% Similarity=0.015 Sum_probs=83.1
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---C-
Q 010717 379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT---N- 454 (503)
Q Consensus 379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd---~- 454 (503)
.....+..+|+-|++.||+++|++.|.++.+.+- .......++.++..+.+..+++.....+++++..+-.. |
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~---~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~ 110 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCT---SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWE 110 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC---CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHH
Confidence 3556788999999999999999999999887632 23456788889999999999999999999998766422 2
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 010717 455 --VSVLVQRALLYESMEKYKLGAEDLRTVLKID 485 (503)
Q Consensus 455 --~kAlyrlA~Ay~~LGdyeeAle~LqkALkLD 485 (503)
.+.....|..++..++|.+|.+.|..++.-.
T Consensus 111 ~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 111 RRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 2234456888899999999999998776443
No 217
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.67 E-value=0.0073 Score=51.78 Aligned_cols=61 Identities=13% Similarity=0.171 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHhh
Q 010717 441 VADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN--RIARSTIHRLTKM 501 (503)
Q Consensus 441 LedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen--~eAk~~La~Lqkl 501 (503)
+..+++.++.+|++..+.|.+|.+|+..|++++|++.|.++++.+++. ..+++.+-.+.++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~ 70 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFEL 70 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHH
Confidence 445556666666666666666666666666666666666666665543 4445555444443
No 218
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=0.029 Score=56.83 Aligned_cols=112 Identities=16% Similarity=0.183 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCC------
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEV-GEYKKAVADCSKVLEQDDT------ 453 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrL-GdyeeALedaekALkLdPd------ 453 (503)
+...+..+..+|++.+..+|+.++++||++.-..+.-..-+..+..++.+|-.. .++++||.+|+++-+....
T Consensus 73 aat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss 152 (288)
T KOG1586|consen 73 AATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS 152 (288)
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh
Confidence 333444455556777999999999999998654433223344466788887654 8899999999998876422
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 010717 454 NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIAR 492 (503)
Q Consensus 454 ~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk 492 (503)
-.+.++..+..-..+++|.+|++.|+++.+-.-+|...+
T Consensus 153 ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLK 191 (288)
T KOG1586|consen 153 ANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLK 191 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 134555667777788999999999999887766664443
No 219
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.58 E-value=0.01 Score=63.11 Aligned_cols=105 Identities=14% Similarity=0.129 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC-C---ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSG-D---MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD---- 451 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~-d---dpd~A~aysNrAlcylrLGdyeeALedaekALkLd---- 451 (503)
+.+.+..+|..+-..+||++|+-+..+|+++..... + ......+++.++..+..+|++-+|.++|+++.++.
T Consensus 161 Elqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~G 240 (518)
T KOG1941|consen 161 ELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHG 240 (518)
T ss_pred eeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhC
Confidence 456788899999999999999999999999987654 2 23456678889999999999999999999998774
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717 452 --DTNVSVLVQRALLYESMEKYKLGAEDLRTVLKI 484 (503)
Q Consensus 452 --Pd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkL 484 (503)
+-....+..+|.+|..+++.|.|...|+.+...
T Consensus 241 dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 241 DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 334556677899999999999999999998765
No 220
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.57 E-value=0.072 Score=53.72 Aligned_cols=110 Identities=19% Similarity=0.172 Sum_probs=82.3
Q ss_pred CcchHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHh-c---CC----ChhhHHHHHHHHHHHHHcCCHHH---HHHHH
Q 010717 377 AGVTGAAAKNKGVDNQKAG-QYADAIKWLSWAVILLEK-S---GD----MATMMEVLSTRASCYKEVGEYKK---AVADC 444 (503)
Q Consensus 377 ~~~~A~alk~lGn~~fkqG-DY~eAIk~YeKALeL~pk-~---~d----dpd~A~aysNrAlcylrLGdyee---ALeda 444 (503)
....+..+++.|...++++ +|++|+.++++|+++++. . .. ......++..++.+|+..+.++. |+...
T Consensus 31 ~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l 110 (278)
T PF08631_consen 31 AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNAL 110 (278)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 3457888999999999999 999999999999999754 1 11 13456778889999999888654 33444
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717 445 SKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDP 486 (503)
Q Consensus 445 ekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP 486 (503)
+.+-...|+.+..++..=.++....+.+++.+.+++++.--.
T Consensus 111 ~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 111 RLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 444444577777775555555558889999999999888644
No 221
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.56 E-value=0.025 Score=67.42 Aligned_cols=62 Identities=8% Similarity=0.042 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717 423 VLSTRASCYKEVGEYKKAVADCSKVLEQD-DTNVSVLVQRALLYESMEKYKLGAEDLRTVLKI 484 (503)
Q Consensus 423 aysNrAlcylrLGdyeeALedaekALkLd-Pd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkL 484 (503)
.|..+..+|.+.|++++|++.|++..+.+ +.+...|..+..+|.+.|++++|++.|+++.+.
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 34444444555555555555555555443 223344444455555555555555555555443
No 222
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.53 E-value=0.0037 Score=38.94 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717 457 VLVQRALLYESMEKYKLGAEDLRTVLKIDP 486 (503)
Q Consensus 457 AlyrlA~Ay~~LGdyeeAle~LqkALkLDP 486 (503)
+++++|.+|+.++++++|+.+|+++++++|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 445555555555555555555555555544
No 223
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.019 Score=59.90 Aligned_cols=86 Identities=17% Similarity=0.078 Sum_probs=74.8
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 010717 391 NQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEK 470 (503)
Q Consensus 391 ~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGd 470 (503)
+.+..+|.+||+++.--.+. .|.....++.++.||++..+|+.|...|++.-.+.|...+..+..++.++..+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELER------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI 93 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhc------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc
Confidence 36788999999998877765 444567889999999999999999999999999999999988889999999999
Q ss_pred HHHHHHHHHHHH
Q 010717 471 YKLGAEDLRTVL 482 (503)
Q Consensus 471 yeeAle~LqkAL 482 (503)
+.+|++....++
T Consensus 94 ~ADALrV~~~~~ 105 (459)
T KOG4340|consen 94 YADALRVAFLLL 105 (459)
T ss_pred cHHHHHHHHHhc
Confidence 999998765443
No 224
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.51 E-value=0.015 Score=58.73 Aligned_cols=93 Identities=10% Similarity=-0.070 Sum_probs=41.2
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 010717 389 VDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKE-VGEYKKAVADCSKVLEQDDTNVSVLVQRALLYES 467 (503)
Q Consensus 389 n~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylr-LGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~ 467 (503)
+...+.+..+.|.+.|.+|++. ......+|...|...++ .++.+.|...|+.+++..|.+...++....-+..
T Consensus 9 ~~~~r~~g~~~aR~vF~~a~~~------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 9 RFMRRTEGIEAARKVFKRARKD------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhCChHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 3333444445555555555411 11223444444444334 2333335555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHHhCCC
Q 010717 468 MEKYKLGAEDLRTVLKIDPS 487 (503)
Q Consensus 468 LGdyeeAle~LqkALkLDPe 487 (503)
+++.+.|...|++++..-+.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~ 102 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPK 102 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSC
T ss_pred hCcHHHHHHHHHHHHHhcCc
Confidence 55555555555555544433
No 225
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.46 E-value=0.035 Score=51.89 Aligned_cols=82 Identities=12% Similarity=0.115 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHH-cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010717 421 MEVLSTRASCYKEVGE---YKKAVADCSKVLE-QDDT-NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTI 495 (503)
Q Consensus 421 A~aysNrAlcylrLGd---yeeALedaekALk-LdPd-~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~L 495 (503)
.+..++++.|+.+..+ ..+.+..++..++ -+|. ..+.+|.++..++++|+|++++.+++..|+.+|+|.++...-
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 4566778888877554 5667888888886 4443 456889999999999999999999999999999999998887
Q ss_pred HHHHhhh
Q 010717 496 HRLTKMV 502 (503)
Q Consensus 496 a~LqklL 502 (503)
..+++.+
T Consensus 112 ~~ied~i 118 (149)
T KOG3364|consen 112 ETIEDKI 118 (149)
T ss_pred HHHHHHH
Confidence 7776653
No 226
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.39 E-value=0.078 Score=54.12 Aligned_cols=107 Identities=14% Similarity=0.048 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCHH
Q 010717 382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD-----DTNVS 456 (503)
Q Consensus 382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd-----Pd~~k 456 (503)
..|...+..|...++|++|..++.+|++-.+.+..--+-+..|-..+....++..+.|++.+|+++..+. |+.+-
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA 111 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA 111 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 3344445555667788888888888887655544344556667777777788888888888888888773 55555
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717 457 VLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488 (503)
Q Consensus 457 AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen 488 (503)
.-+.++.-.....+.++|+..|++++.+-.++
T Consensus 112 maleKAak~lenv~Pd~AlqlYqralavve~~ 143 (308)
T KOG1585|consen 112 MALEKAAKALENVKPDDALQLYQRALAVVEED 143 (308)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence 55555555566668888888888888775544
No 227
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.39 E-value=0.027 Score=50.38 Aligned_cols=64 Identities=17% Similarity=0.111 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLE 449 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALk 449 (503)
...++..++..+...+++++|+.++++++.+ +|.+-.+|..+-.||...|++.+|++.|+++..
T Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 61 YLDALERLAEALLEAGDYEEALRLLQRALAL------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4567778888899999999999999999999 777889999999999999999999999998864
No 228
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.35 E-value=0.011 Score=61.93 Aligned_cols=78 Identities=22% Similarity=0.167 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
++......+....+.|+.+.|.++|+.|+.+ .|+..+++..+|...-.-++.-+|-++|-+||.++|.+.+|+.
T Consensus 115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlal------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 115 EAILALKAAGRSRKDGKLEKAMTLFEHALAL------APTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhc------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 3444445555566666666666666666666 4445556666666665556666666666666666666666666
Q ss_pred HHHH
Q 010717 460 QRAL 463 (503)
Q Consensus 460 rlA~ 463 (503)
+++.
T Consensus 189 nR~R 192 (472)
T KOG3824|consen 189 NRAR 192 (472)
T ss_pred hhhc
Confidence 6543
No 229
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.34 E-value=0.024 Score=57.56 Aligned_cols=73 Identities=14% Similarity=0.164 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 010717 420 MMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN---VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIAR 492 (503)
Q Consensus 420 ~A~aysNrAlcylrLGdyeeALedaekALkLdPd~---~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk 492 (503)
-+..|++-|...++.|++++|+..|+++...+|.. .++.+.++.++++.++|++|+..+++-+++.|.++.+.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d 108 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD 108 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence 45678889999999999999999999999998754 67999999999999999999999999999999986653
No 230
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.28 E-value=0.066 Score=54.32 Aligned_cols=106 Identities=18% Similarity=0.143 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN------ 454 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~------ 454 (503)
++.+...++.|-..+++..|=..|.+|.++.-+.+...+-+..|...+.||.+. +.++|+..++++|++.-+-
T Consensus 34 adl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~~a 112 (288)
T KOG1586|consen 34 AELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFTMA 112 (288)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHHHH
Confidence 555666788888899999999999999998777777777889999999998554 9999999999999986432
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC
Q 010717 455 VSVLVQRALLYESM-EKYKLGAEDLRTVLKIDPS 487 (503)
Q Consensus 455 ~kAlyrlA~Ay~~L-GdyeeAle~LqkALkLDPe 487 (503)
++.+..+|.+|..- .++++|+.+|+.+-+..-.
T Consensus 113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ 146 (288)
T KOG1586|consen 113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG 146 (288)
T ss_pred HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc
Confidence 34566789998765 9999999999998776543
No 231
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.26 E-value=0.072 Score=56.95 Aligned_cols=99 Identities=15% Similarity=0.064 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ 460 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr 460 (503)
.......+..+...+++++|.++.+++++.. -++ +++. +.-| ++.+++++=++.+++.++.+|+++..++.
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~----~D~---~L~~-~~~~-l~~~d~~~l~k~~e~~l~~h~~~p~L~~t 333 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQ----WDP---RLCR-LIPR-LRPGDPEPLIKAAEKWLKQHPEDPLLLST 333 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhc----cCh---hHHH-HHhh-cCCCCchHHHHHHHHHHHhCCCChhHHHH
Confidence 4455567778889999999999999998651 122 2222 2222 46788888888899999999998988888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717 461 RALLYESMEKYKLGAEDLRTVLKIDPSN 488 (503)
Q Consensus 461 lA~Ay~~LGdyeeAle~LqkALkLDPen 488 (503)
+|..|+..+.|.+|.++|+.+++..|..
T Consensus 334 LG~L~~k~~~w~kA~~~leaAl~~~~s~ 361 (400)
T COG3071 334 LGRLALKNKLWGKASEALEAALKLRPSA 361 (400)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcCCCh
Confidence 9999999999999999999988888754
No 232
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.25 E-value=0.0069 Score=37.68 Aligned_cols=32 Identities=31% Similarity=0.505 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 010717 422 EVLSTRASCYKEVGEYKKAVADCSKVLEQDDT 453 (503)
Q Consensus 422 ~aysNrAlcylrLGdyeeALedaekALkLdPd 453 (503)
.++.++|.|+..++++++|+..++++++++|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 46778889999999999999999999888775
No 233
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.23 E-value=0.02 Score=44.94 Aligned_cols=44 Identities=27% Similarity=0.329 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 010717 422 EVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLY 465 (503)
Q Consensus 422 ~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay 465 (503)
+.++.+|..++++|+|++|+++++.+|+++|++.++.-.+..+-
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 35677999999999999999999999999999988876655543
No 234
>PLN03077 Protein ECB2; Provisional
Probab=96.23 E-value=0.064 Score=61.68 Aligned_cols=107 Identities=8% Similarity=0.025 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 010717 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRA 462 (503)
Q Consensus 383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA 462 (503)
.+..+-..+.+.|++++|+++|++..+.. +-.| +...|..+..++.+.|++++|++.+++. .+.|+ ...|..+-
T Consensus 591 T~~~ll~a~~~~g~v~ea~~~f~~M~~~~---gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl 664 (857)
T PLN03077 591 TFISLLCACSRSGMVTQGLEYFHSMEEKY---SITP-NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALL 664 (857)
T ss_pred cHHHHHHHHhhcChHHHHHHHHHHHHHHh---CCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHH
Confidence 34444556777888888888887776331 1122 2356666777777777777777776653 13332 33333333
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010717 463 LLYESMEKYKLGAEDLRTVLKIDPSNRIARSTI 495 (503)
Q Consensus 463 ~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~L 495 (503)
.++...++.+.|....+++++++|++......|
T Consensus 665 ~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll 697 (857)
T PLN03077 665 NACRIHRHVELGELAAQHIFELDPNSVGYYILL 697 (857)
T ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCcchHHHH
Confidence 344455555555555555555555554443333
No 235
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.21 E-value=0.016 Score=65.10 Aligned_cols=66 Identities=11% Similarity=0.041 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 010717 423 VLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRI 490 (503)
Q Consensus 423 aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~e 490 (503)
.|..+..+|.+.|++++|++.+++.. ..| +...|..+..++...|+++.|...++++++++|++..
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~ 529 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLN 529 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCc
Confidence 34445555555555555555554321 122 3445556666677777777777777777777776543
No 236
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.17 E-value=0.0063 Score=61.29 Aligned_cols=58 Identities=19% Similarity=0.238 Sum_probs=40.3
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717 431 YKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488 (503)
Q Consensus 431 ylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen 488 (503)
..+.++.+.|.+.|.+++++.|+|...|+|+|....+.|+++.|.+.|++.|+++|++
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3455666677777777777777777777777777777777777777777777777665
No 237
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.16 E-value=0.059 Score=45.89 Aligned_cols=62 Identities=16% Similarity=0.273 Sum_probs=48.7
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHhcCCCh---hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 010717 390 DNQKAGQYADAIKWLSWAVILLEKSGDMA---TMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD 451 (503)
Q Consensus 390 ~~fkqGDY~eAIk~YeKALeL~pk~~ddp---d~A~aysNrAlcylrLGdyeeALedaekALkLd 451 (503)
...+.+||.+|++.+.+..+......... ....++.+++.++...|++++|++.+++++++.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 45788999999999999988866544333 345667788888888999999999998888775
No 238
>PRK10941 hypothetical protein; Provisional
Probab=96.14 E-value=0.054 Score=55.31 Aligned_cols=82 Identities=13% Similarity=-0.017 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
....+.++=..|.+.++|+.|+.+.+..+.+ .|++..-+-.||.+|.+++.+..|+.|++..++..|+.+.+..
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQF------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 3445667778899999999999999999999 5566778888999999999999999999999999999998877
Q ss_pred HHHHHHHH
Q 010717 460 QRALLYES 467 (503)
Q Consensus 460 rlA~Ay~~ 467 (503)
.+.++...
T Consensus 254 ik~ql~~l 261 (269)
T PRK10941 254 IRAQIHSI 261 (269)
T ss_pred HHHHHHHH
Confidence 76665443
No 239
>PLN03077 Protein ECB2; Provisional
Probab=96.08 E-value=0.035 Score=63.78 Aligned_cols=104 Identities=11% Similarity=0.005 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDD--TNVSV 457 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdP--d~~kA 457 (503)
....|..+...|.+.|+.++|+++|++.++. +-.|+..+ |..+-.++.+.|++++|++.++...+... -+.+.
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~----g~~Pd~~T-~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~ 627 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVES----GVNPDEVT-FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCccc-HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH
Confidence 4667888899999999999999999997753 22444444 44444567789999999999999884432 24578
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 010717 458 LVQRALLYESMEKYKLGAEDLRTVLKIDPSNR 489 (503)
Q Consensus 458 lyrlA~Ay~~LGdyeeAle~LqkALkLDPen~ 489 (503)
|..+..+|.+.|++++|.+.+++. .+.|+..
T Consensus 628 y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~~ 658 (857)
T PLN03077 628 YACVVDLLGRAGKLTEAYNFINKM-PITPDPA 658 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHC-CCCCCHH
Confidence 888999999999999999999875 3566543
No 240
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.06 E-value=0.011 Score=39.64 Aligned_cols=32 Identities=22% Similarity=0.527 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 010717 423 VLSTRASCYKEVGEYKKAVADCSKVLEQDDTN 454 (503)
Q Consensus 423 aysNrAlcylrLGdyeeALedaekALkLdPd~ 454 (503)
+++++|.|+.++|++++|++.++++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 57788888888888999999998888888763
No 241
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.04 E-value=0.075 Score=54.24 Aligned_cols=105 Identities=16% Similarity=0.186 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HcC--CCC
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVL----EQD--DTN 454 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekAL----kLd--Pd~ 454 (503)
+.....++-......+.++|+.+|++++.+.+.........+++...+.++.++++|++|-..+.+-. +.+ +..
T Consensus 110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~ 189 (308)
T KOG1585|consen 110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQ 189 (308)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccH
Confidence 44445555566667788889999999988877665555566778888888888988888877776533 222 333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 010717 455 VSVLVQRALLYESMEKYKLGAEDLRTVLKID 485 (503)
Q Consensus 455 ~kAlyrlA~Ay~~LGdyeeAle~LqkALkLD 485 (503)
-++++..-.+|....+|..|..++++.-++.
T Consensus 190 ~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 190 CKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 4555556666677779999999988866653
No 242
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.03 E-value=0.054 Score=48.75 Aligned_cols=96 Identities=14% Similarity=0.105 Sum_probs=75.2
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcCCCCH
Q 010717 387 KGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVG-----------EYKKAVADCSKVLEQDDTNV 455 (503)
Q Consensus 387 lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLG-----------dyeeALedaekALkLdPd~~ 455 (503)
++..++++|++-+|+++.++.+....+ +.....++..-|.+++++. -+-.+++.+.++..+.|..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~---~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A 78 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGE---DESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSA 78 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccC---CCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHH
Confidence 567899999999999999999876332 2222245555566654432 24568899999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 010717 456 SVLVQRALLYESMEKYKLGAEDLRTVLKID 485 (503)
Q Consensus 456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLD 485 (503)
..+|.+|.-+-....|++++...+++|.+.
T Consensus 79 ~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 79 HSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999998763
No 243
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.96 E-value=0.11 Score=52.06 Aligned_cols=108 Identities=12% Similarity=0.025 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHHhc---------------------------CCChhhHHHHHHHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVI-LLEKS---------------------------GDMATMMEVLSTRASCY 431 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALe-L~pk~---------------------------~ddpd~A~aysNrAlcy 431 (503)
........+..+..+|+..+|+..++..++ ..... ......+.++..+|...
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~ 262 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL 262 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 355677788999999999999999988887 22211 01234566677777777
Q ss_pred HHc------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHHhCCC
Q 010717 432 KEV------GEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKY-----------------KLGAEDLRTVLKIDPS 487 (503)
Q Consensus 432 lrL------GdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdy-----------------eeAle~LqkALkLDPe 487 (503)
..+ +.++++++.|+++++++|.+.++++..|..+..+=+. ..|++.|.+++.+.++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 777 8899999999999999999999999988887664221 3489999999999887
No 244
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.94 E-value=0.018 Score=40.68 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 010717 384 AKNKGVDNQKAGQYADAIKWLSWAVILL 411 (503)
Q Consensus 384 lk~lGn~~fkqGDY~eAIk~YeKALeL~ 411 (503)
+..+|.+|.+.|+|++|+++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 5567777777777777777777766553
No 245
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.86 E-value=0.12 Score=56.82 Aligned_cols=89 Identities=17% Similarity=0.117 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHHHHHHhcCC-------------------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C
Q 010717 396 QYADAIKWLSWAVILLEKSGD-------------------MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT--N 454 (503)
Q Consensus 396 DY~eAIk~YeKALeL~pk~~d-------------------dpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd--~ 454 (503)
-..+|.++|++|++..+..-. ..-...+...+|.|..++|+.+||++.++..++..|. +
T Consensus 215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~ 294 (539)
T PF04184_consen 215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN 294 (539)
T ss_pred CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch
Confidence 367888888888876553110 0012344567899999999999999999999998775 5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717 455 VSVLVQRALLYESMEKYKLGAEDLRTVLKI 484 (503)
Q Consensus 455 ~kAlyrlA~Ay~~LGdyeeAle~LqkALkL 484 (503)
...++++-.+|..+++|.++...+.+.-++
T Consensus 295 l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 295 LNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 679999999999999999998888776443
No 246
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.83 E-value=0.44 Score=45.51 Aligned_cols=115 Identities=14% Similarity=-0.018 Sum_probs=89.2
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 010717 379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVL 458 (503)
Q Consensus 379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAl 458 (503)
.....+.....+..+.++.+++...+.....+ .|...++-..-+.+++..+++.+|+..++.+..-.|..+.+-
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~k 81 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAK 81 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHH
Confidence 35667888888999999999999999887777 566778888889999999999999999999988889998888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717 459 VQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM 501 (503)
Q Consensus 459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl 501 (503)
-.++.||+.+++.+-= .+-++++... .++.+...++.+...
T Consensus 82 ALlA~CL~~~~D~~Wr-~~A~evle~~-~d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 82 ALLALCLYALGDPSWR-RYADEVLESG-ADPDARALVRALLAR 122 (160)
T ss_pred HHHHHHHHHcCChHHH-HHHHHHHhcC-CChHHHHHHHHHHHh
Confidence 8889999999985432 2223344443 356666666665543
No 247
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.80 E-value=0.084 Score=58.12 Aligned_cols=108 Identities=14% Similarity=0.088 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHH
Q 010717 382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ-DDTNVSVLVQ 460 (503)
Q Consensus 382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL-dPd~~kAlyr 460 (503)
.+-..++.++.+.|+.+|||+.|.+.++..+ ..+...++.|+..|++.+++|.++...+.+-=++ -|+.+..+|.
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p----~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YT 335 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFP----NLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYT 335 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCC----ccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHH
Confidence 3445689999999999999999999987633 2245679999999999999999998888775433 2667778887
Q ss_pred HHHHHHH-cCC---------------HHHHHHHHHHHHHhCCCCHHHHH
Q 010717 461 RALLYES-MEK---------------YKLGAEDLRTVLKIDPSNRIARS 493 (503)
Q Consensus 461 lA~Ay~~-LGd---------------yeeAle~LqkALkLDPen~eAk~ 493 (503)
.|....+ .++ -..|++.+++|++.+|--+....
T Consensus 336 aALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 336 AALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 7665433 122 23578999999999986654433
No 248
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.75 E-value=0.2 Score=50.73 Aligned_cols=110 Identities=5% Similarity=-0.095 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---
Q 010717 380 TGAAAKNKGVDNQK-AGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNV--- 455 (503)
Q Consensus 380 ~A~alk~lGn~~fk-qGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~--- 455 (503)
....|...|..-++ .++.+.|.+.|+.+++..+ .+..+|......++++++.+.|...|++|+..-+...
T Consensus 34 ~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~------~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~ 107 (280)
T PF05843_consen 34 TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP------SDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSK 107 (280)
T ss_dssp -THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT------T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCH
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHH
Confidence 35677778877666 6777779999999999854 4567788888899999999999999999998766544
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010717 456 SVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTI 495 (503)
Q Consensus 456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~L 495 (503)
..|-....--...|+++......+++.++.|++..+...+
T Consensus 108 ~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~ 147 (280)
T PF05843_consen 108 KIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFS 147 (280)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 3555667777778999999999999999999876655543
No 249
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.68 E-value=0.095 Score=60.74 Aligned_cols=103 Identities=18% Similarity=0.135 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 010717 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRA 462 (503)
Q Consensus 383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA 462 (503)
+....|..+++.|++++|.++++..-.+ .+++-..+.-+-.||.+++++++|+..|++++..+|. -+.++.+=
T Consensus 45 a~vLkaLsl~r~gk~~ea~~~Le~~~~~------~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lF 117 (932)
T KOG2053|consen 45 AKVLKALSLFRLGKGDEALKLLEALYGL------KGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLF 117 (932)
T ss_pred HHHHHHHHHHHhcCchhHHHHHhhhccC------CCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHH
Confidence 3444566666777777777444333222 2224455555667777777777777777777777776 66666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 010717 463 LLYESMEKYKLGAEDLRTVLKIDPSNRIAR 492 (503)
Q Consensus 463 ~Ay~~LGdyeeAle~LqkALkLDPen~eAk 492 (503)
.+|.+-+.|.+--..-.+..+..|+++-..
T Consensus 118 mayvR~~~yk~qQkaa~~LyK~~pk~~yyf 147 (932)
T KOG2053|consen 118 MAYVREKSYKKQQKAALQLYKNFPKRAYYF 147 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccchH
Confidence 666666666665555555555666665443
No 250
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.68 E-value=0.046 Score=53.11 Aligned_cols=63 Identities=11% Similarity=0.127 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717 437 YKKAVADCSKVLEQDDTNVSVLVQRALLYESMEK----------YKLGAEDLRTVLKIDPSNRIARSTIHRLT 499 (503)
Q Consensus 437 yeeALedaekALkLdPd~~kAlyrlA~Ay~~LGd----------yeeAle~LqkALkLDPen~eAk~~La~Lq 499 (503)
|+.|.+.++.....+|.+++++++-|.+|..|-+ +++|+.-|+++|+|+|+.-++...+..+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ 79 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAY 79 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 7899999999999999999999999999888743 67899999999999999988877776554
No 251
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.64 E-value=0.22 Score=51.24 Aligned_cols=91 Identities=16% Similarity=0.164 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 010717 396 QYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGA 475 (503)
Q Consensus 396 DY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAl 475 (503)
++.+|.-+|++.-+. .+....++...+.|++.+++|++|...++.+|.-++.+++.+.++-.+-..+|+-.++.
T Consensus 188 k~qdAfyifeE~s~k------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEK------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred hhhhHHHHHHHHhcc------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHH
Confidence 355555555544321 12234567778999999999999999999999999999999999988888888877766
Q ss_pred HHH-HHHHHhCCCCHHHH
Q 010717 476 EDL-RTVLKIDPSNRIAR 492 (503)
Q Consensus 476 e~L-qkALkLDPen~eAk 492 (503)
+.+ ......+|+++-++
T Consensus 262 ~r~l~QLk~~~p~h~~vk 279 (299)
T KOG3081|consen 262 ERNLSQLKLSHPEHPFVK 279 (299)
T ss_pred HHHHHHHHhcCCcchHHH
Confidence 554 45555688876553
No 252
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.61 E-value=0.27 Score=49.32 Aligned_cols=120 Identities=17% Similarity=0.104 Sum_probs=92.6
Q ss_pred cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--C-C--
Q 010717 378 GVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ--D-D-- 452 (503)
Q Consensus 378 ~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL--d-P-- 452 (503)
...+..+...+..+.+.|.+..|...+.++..+.... ......+....+..+...|+..+|+..++..++. . .
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~--~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~ 220 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSS--ESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNID 220 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcc--cCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccc
Confidence 3467788999999999999999999999988762211 1124567788899999999999999999888871 1 0
Q ss_pred -----------------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010717 453 -----------------------------TNVSVLVQRALLYESM------EKYKLGAEDLRTVLKIDPSNRIARSTIHR 497 (503)
Q Consensus 453 -----------------------------d~~kAlyrlA~Ay~~L------GdyeeAle~LqkALkLDPen~eAk~~La~ 497 (503)
...++++.+|.-...+ .++++++..|+++++++|....+...+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 221 SISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 0134677777777777 88999999999999999988776666555
Q ss_pred HH
Q 010717 498 LT 499 (503)
Q Consensus 498 Lq 499 (503)
..
T Consensus 301 ~~ 302 (352)
T PF02259_consen 301 FN 302 (352)
T ss_pred HH
Confidence 43
No 253
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.60 E-value=0.11 Score=54.61 Aligned_cols=75 Identities=20% Similarity=0.177 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010717 423 VLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHR 497 (503)
Q Consensus 423 aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~ 497 (503)
+-.+.+.-..+.|+.++|...++.|++++|++++++...|.......++-+|-.+|.++|.++|.|.++.....+
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 334455556789999999999999999999999999999999999999999999999999999999887655443
No 254
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.60 E-value=0.021 Score=40.34 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=12.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 010717 458 LVQRALLYESMEKYKLGAEDLRTVL 482 (503)
Q Consensus 458 lyrlA~Ay~~LGdyeeAle~LqkAL 482 (503)
|.++|.+|..+|+|++|+++|+++|
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555533
No 255
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=95.59 E-value=0.012 Score=63.90 Aligned_cols=88 Identities=20% Similarity=0.214 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ 460 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr 460 (503)
+..+-+++.++++.++|..|+.-+.+||++ +|....+|+.+|.+++.+++|.+|+.++++...+.|+.+++...
T Consensus 38 a~~~anRa~a~lK~e~~~~Al~Da~kaie~------dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~ 111 (476)
T KOG0376|consen 38 AIYFANRALAHLKVESFGGALHDALKAIEL------DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRK 111 (476)
T ss_pred eeeechhhhhheeechhhhHHHHHHhhhhc------CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHH
Confidence 334556678889999999999999999999 67888999999999999999999999999999999999988777
Q ss_pred HHHHHH--HcCCHHHH
Q 010717 461 RALLYE--SMEKYKLG 474 (503)
Q Consensus 461 lA~Ay~--~LGdyeeA 474 (503)
+..|-. .+.++++|
T Consensus 112 ~~Ec~~~vs~~~fe~a 127 (476)
T KOG0376|consen 112 IDECNKIVSEEKFEKA 127 (476)
T ss_pred HHHHHHHHHHHhhhhc
Confidence 766543 33344444
No 256
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.54 E-value=0.15 Score=43.74 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 010717 400 AIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN 454 (503)
Q Consensus 400 AIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~ 454 (503)
.++.++++++. +|.+..+.+.++.+++..|++++|++.+-.+++.++++
T Consensus 7 ~~~al~~~~a~------~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAA------NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHH------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHc------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 35567777776 67788999999999999999999999999999999887
No 257
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.43 E-value=0.13 Score=56.14 Aligned_cols=88 Identities=13% Similarity=0.031 Sum_probs=71.7
Q ss_pred hCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHcC
Q 010717 394 AGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVS----VLVQRALLYESME 469 (503)
Q Consensus 394 qGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~k----AlyrlA~Ay~~LG 469 (503)
..+.+.|.+.+.+.++. -|..+-.+...|.++...|+.++|++.+++|+.....+.+ .+|.++.+|+.+.
T Consensus 246 ~~~~~~a~~lL~~~~~~------yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~ 319 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR------YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQH 319 (468)
T ss_pred CCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHc
Confidence 34566677777777765 4556677889999999999999999999999965555544 6778899999999
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 010717 470 KYKLGAEDLRTVLKIDPS 487 (503)
Q Consensus 470 dyeeAle~LqkALkLDPe 487 (503)
+|++|.++|.+.++...=
T Consensus 320 ~w~~A~~~f~~L~~~s~W 337 (468)
T PF10300_consen 320 DWEEAAEYFLRLLKESKW 337 (468)
T ss_pred hHHHHHHHHHHHHhcccc
Confidence 999999999999987543
No 258
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.27 E-value=0.26 Score=59.74 Aligned_cols=78 Identities=17% Similarity=0.060 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 010717 421 MEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPS--NRIARSTIHRL 498 (503)
Q Consensus 421 A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPe--n~eAk~~La~L 498 (503)
..+|..|.-+|.+.+.+++|.+.+++.++...+..+.|...+..++...+-++|.+.+.+||+--|. +.++....++|
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 3456667778888888888888888888877777888888899888888888888899999988887 55555554444
No 259
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.20 E-value=0.47 Score=47.14 Aligned_cols=108 Identities=17% Similarity=0.053 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcC-------CHHHHHHHHHHHH
Q 010717 380 TGAAAKNKGVDNQK----AGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVG-------EYKKAVADCSKVL 448 (503)
Q Consensus 380 ~A~alk~lGn~~fk----qGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLG-------dyeeALedaekAL 448 (503)
.+...+.+|..+.. ..|+.+|+++|++|.++-. .+- ..+..+++.+|..-. +..+|+..|.++.
T Consensus 108 ~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~----~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa 182 (292)
T COG0790 108 LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGN----VEA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAA 182 (292)
T ss_pred cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCC----hhH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHH
Confidence 45567778888877 5599999999999997611 100 234677777776531 2347888888888
Q ss_pred HcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010717 449 EQDDTNVSVLVQRALLYES----MEKYKLGAEDLRTVLKIDPSNRIARSTIH 496 (503)
Q Consensus 449 kLdPd~~kAlyrlA~Ay~~----LGdyeeAle~LqkALkLDPen~eAk~~La 496 (503)
.+. +..+++++|.+|.. ..++++|+.+|+++-+... ......+.
T Consensus 183 ~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 183 ELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred Hhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 776 78899999988866 4589999999999998765 44444444
No 260
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.17 E-value=0.16 Score=52.14 Aligned_cols=81 Identities=17% Similarity=0.279 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717 420 MMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT 499 (503)
Q Consensus 420 ~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq 499 (503)
...+..++=..+.+.++.+.|+.+.++.+.++|+++.-+.-+|.+|..++.+.-|++++...++.-|+...+...-.++.
T Consensus 180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 180 LSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 45566777788899999999999999999999999999999999999999999999999999999999877765555544
Q ss_pred h
Q 010717 500 K 500 (503)
Q Consensus 500 k 500 (503)
+
T Consensus 260 ~ 260 (269)
T COG2912 260 E 260 (269)
T ss_pred H
Confidence 3
No 261
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.09 E-value=0.027 Score=61.88 Aligned_cols=86 Identities=17% Similarity=0.071 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHHhc--C---------CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717 382 AAAKNKGVDNQKAGQYADAIKWLSWAVI-LLEKS--G---------DMATMMEVLSTRASCYKEVGEYKKAVADCSKVLE 449 (503)
Q Consensus 382 ~alk~lGn~~fkqGDY~eAIk~YeKALe-L~pk~--~---------ddpd~A~aysNrAlcylrLGdyeeALedaekALk 449 (503)
..+.++|.++|+.+.|..++.+|.+|+. .+... + ......++++|.|..|+..|+.-.|.+.+.++..
T Consensus 284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH 363 (696)
T ss_pred eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence 3457899999999999999999999995 33321 1 0234678999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHH
Q 010717 450 QDDTNVSVLVQRALLYES 467 (503)
Q Consensus 450 LdPd~~kAlyrlA~Ay~~ 467 (503)
....++..|+|+|.|++.
T Consensus 364 vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 364 VFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHhcCcHHHHHHHHHHHH
Confidence 999999999999999865
No 262
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.09 E-value=0.29 Score=46.66 Aligned_cols=82 Identities=12% Similarity=-0.035 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717 421 MEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK 500 (503)
Q Consensus 421 A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk 500 (503)
...+..+..+-++.++.+++...+.....++|..+......|.+++..++|.+|+..|+++..-.|..+.++..+..|..
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 45667777788889999999999999999999999999999999999999999999999999999999999888888876
Q ss_pred hh
Q 010717 501 MV 502 (503)
Q Consensus 501 lL 502 (503)
.+
T Consensus 90 ~~ 91 (160)
T PF09613_consen 90 AL 91 (160)
T ss_pred Hc
Confidence 54
No 263
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.08 E-value=0.21 Score=58.03 Aligned_cols=91 Identities=13% Similarity=0.048 Sum_probs=77.4
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 010717 391 NQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEK 470 (503)
Q Consensus 391 ~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGd 470 (503)
....++|..|++...+.++. .|....+...-|..++++|++++|+..++..-.+.+++...+--+-.||..+++
T Consensus 19 ~ld~~qfkkal~~~~kllkk------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK------HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGK 92 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhh
Confidence 46788999999999999876 334445566668999999999999977777666777788888889999999999
Q ss_pred HHHHHHHHHHHHHhCCC
Q 010717 471 YKLGAEDLRTVLKIDPS 487 (503)
Q Consensus 471 yeeAle~LqkALkLDPe 487 (503)
+++|...|+++++.+|.
T Consensus 93 ~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 93 LDEAVHLYERANQKYPS 109 (932)
T ss_pred hhHHHHHHHHHHhhCCc
Confidence 99999999999999998
No 264
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.06 E-value=0.19 Score=49.76 Aligned_cols=99 Identities=10% Similarity=-0.028 Sum_probs=79.5
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
+...+..+++..|..+++.+|...+++..+.-+. ... ......++..|..+|++++|...++.++...| .+++..
T Consensus 123 d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa-~r~---pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~ 197 (251)
T COG4700 123 DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA-FRS---PDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARI 197 (251)
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc-cCC---CCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHH
Confidence 5677888999999999999999999999877321 112 23445568888999999999999999999987 466788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLK 483 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALk 483 (503)
+.+..+..+|+.++|.+.+..+.+
T Consensus 198 ~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 198 YYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHH
Confidence 889999999998888777665544
No 265
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.04 E-value=0.26 Score=54.71 Aligned_cols=103 Identities=17% Similarity=0.128 Sum_probs=80.6
Q ss_pred HHHHHHHHHHh----C-CHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCH
Q 010717 384 AKNKGVDNQKA----G-QYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVG---EYKKAVADCSKVLEQDDTNV 455 (503)
Q Consensus 384 lk~lGn~~fkq----G-DY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLG---dyeeALedaekALkLdPd~~ 455 (503)
...+|.+|++. . |++.|+++|.+|.++ ....+.+.++.|+..-. ++.+|.++|..|.+. .++
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~ 360 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL--------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHI 360 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHhc--------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CCh
Confidence 45677777774 3 789999999999977 23467788899997765 578999999999876 479
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717 456 SVLVQRALLYESM----EKYKLGAEDLRTVLKIDPSNRIARSTIHRL 498 (503)
Q Consensus 456 kAlyrlA~Ay~~L----GdyeeAle~LqkALkLDPen~eAk~~La~L 498 (503)
.++|+++.||..- .+.++|+.++.++-++. +..+...+..+
T Consensus 361 ~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~ 405 (552)
T KOG1550|consen 361 LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAF 405 (552)
T ss_pred HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHH
Confidence 9999999999763 57899999999999887 44444444443
No 266
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=94.80 E-value=0.33 Score=58.81 Aligned_cols=108 Identities=14% Similarity=-0.006 Sum_probs=87.1
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHH
Q 010717 385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT--NVSVLVQRA 462 (503)
Q Consensus 385 k~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd--~~kAlyrlA 462 (503)
..+..+|.+..++++|.++|++-++-.. ....+|..++..+++..+-++|...+++||+.-|. +.+..-..|
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG------QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFA 1607 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence 3445566666777778777777776532 23578999999999999999999999999999887 778888889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717 463 LLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL 498 (503)
Q Consensus 463 ~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L 498 (503)
+.-+..|+.+.+...|+..|.-+|........+.+.
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ 1643 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDM 1643 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHH
Confidence 999999999999999999999999876665554443
No 267
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.78 E-value=0.53 Score=52.73 Aligned_cols=121 Identities=12% Similarity=0.059 Sum_probs=87.0
Q ss_pred CCcchHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-
Q 010717 376 PAGVTGAAAKNKGVDNQ-KAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT- 453 (503)
Q Consensus 376 ~~~~~A~alk~lGn~~f-kqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd- 453 (503)
.+..++...+.+|.+++ ...++++|..++++++.+..+..-......+.+.++.++.+.+... |+..++++|+....
T Consensus 54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~ 132 (608)
T PF10345_consen 54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY 132 (608)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc
Confidence 34457888999999987 6789999999999999997663323334555666788888887777 99999999987644
Q ss_pred ---CHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Q 010717 454 ---NVSVLVQRA--LLYESMEKYKLGAEDLRTVLKID--PSNRIARSTIHR 497 (503)
Q Consensus 454 ---~~kAlyrlA--~Ay~~LGdyeeAle~LqkALkLD--Pen~eAk~~La~ 497 (503)
....++++- ..+...+++..|++.++++..+. ..+..+...+.-
T Consensus 133 ~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l 183 (608)
T PF10345_consen 133 GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASL 183 (608)
T ss_pred CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 233344443 23333479999999999999887 455555444433
No 268
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=94.77 E-value=0.32 Score=48.40 Aligned_cols=87 Identities=16% Similarity=0.032 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC----HHHHHHHHHHHHHcC
Q 010717 396 QYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD--DTN----VSVLVQRALLYESME 469 (503)
Q Consensus 396 DY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd--Pd~----~kAlyrlA~Ay~~LG 469 (503)
.-...|+++++|++...+.........+...+|.-|++.|+|++|++.++.+.... ..| ...+..+..|+..++
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 34456777888887776655444556677789999999999999999999997653 344 346777899999999
Q ss_pred CHHHHHHHHHHHH
Q 010717 470 KYKLGAEDLRTVL 482 (503)
Q Consensus 470 dyeeAle~LqkAL 482 (503)
+.++.+...-+++
T Consensus 233 ~~~~~l~~~leLl 245 (247)
T PF11817_consen 233 DVEDYLTTSLELL 245 (247)
T ss_pred CHHHHHHHHHHHh
Confidence 9999988877665
No 269
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.75 E-value=0.28 Score=46.06 Aligned_cols=85 Identities=15% Similarity=0.084 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 010717 380 TGAAAKNKGVDNQKAGQ---YADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVS 456 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGD---Y~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~k 456 (503)
..+..++++..+.+..+ ..+-|.+++..++- .. ....-++++-++..++++++|++++.+++.+|+.+|+|.+
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~~--~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS--AH--PERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh--cC--cccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 46677888888877654 56678888887751 11 2234456666999999999999999999999999999998
Q ss_pred HHHHHHHHHHHc
Q 010717 457 VLVQRALLYESM 468 (503)
Q Consensus 457 AlyrlA~Ay~~L 468 (503)
+.-.+-.+.-.+
T Consensus 107 a~~Lk~~ied~i 118 (149)
T KOG3364|consen 107 ALELKETIEDKI 118 (149)
T ss_pred HHHHHHHHHHHH
Confidence 876665554433
No 270
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.61 E-value=0.072 Score=37.14 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 010717 422 EVLSTRASCYKEVGEYKKAVADCSKVLEQ 450 (503)
Q Consensus 422 ~aysNrAlcylrLGdyeeALedaekALkL 450 (503)
.++.++|.+|..+|++++|+.++++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45666777777777777777777777655
No 271
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.56 E-value=0.58 Score=49.58 Aligned_cols=74 Identities=18% Similarity=0.175 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh-----c---------C---------CChhhHHHHHHHHHHHHHcCC
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEK-----S---------G---------DMATMMEVLSTRASCYKEVGE 436 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk-----~---------~---------ddpd~A~aysNrAlcylrLGd 436 (503)
+++.+..++.++..+||+..|.++.++||-..++ . + .......++......+.+.|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 5889999999999999999999999999855541 1 0 012233455566788889999
Q ss_pred HHHHHHHHHHHHHcCCC
Q 010717 437 YKKAVADCSKVLEQDDT 453 (503)
Q Consensus 437 yeeALedaekALkLdPd 453 (503)
+.-|+++|+-.+.+||.
T Consensus 119 ~rTAlE~~KlLlsLdp~ 135 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPD 135 (360)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999999999999987
No 272
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.56 E-value=0.35 Score=53.42 Aligned_cols=93 Identities=10% Similarity=0.047 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHH
Q 010717 401 IKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEK-YKLGAEDLR 479 (503)
Q Consensus 401 Ik~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGd-yeeAle~Lq 479 (503)
+.+|+.|+.. -+.+..+|.+......+.+.+.+--..|.++|.++|+++..|..-|.=.+..+. ++.|...|.
T Consensus 91 v~lyr~at~r------f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalfl 164 (568)
T KOG2396|consen 91 VFLYRRATNR------FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFL 164 (568)
T ss_pred HHHHHHHHHh------cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHH
Confidence 3567777654 234678999887777777779999999999999999999999999988888776 999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHH
Q 010717 480 TVLKIDPSNRIARSTIHRLT 499 (503)
Q Consensus 480 kALkLDPen~eAk~~La~Lq 499 (503)
++|+.+|+++.+....-+++
T Consensus 165 rgLR~npdsp~Lw~eyfrmE 184 (568)
T KOG2396|consen 165 RGLRFNPDSPKLWKEYFRME 184 (568)
T ss_pred HHhhcCCCChHHHHHHHHHH
Confidence 99999999988766655543
No 273
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.51 E-value=0.19 Score=58.34 Aligned_cols=104 Identities=13% Similarity=0.044 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH----H---HHHhcCC-------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAV----I---LLEKSGD-------MATMMEVLSTRASCYKEVGEYKKAVADCSK 446 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKAL----e---L~pk~~d-------dpd~A~aysNrAlcylrLGdyeeALedaek 446 (503)
-..|++.+..+..++|.+.|+++|+|+- + ++.+++. ...+..+|.=.|..+-..|+.+.||.+|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 3467888888899999999999998853 1 1111111 123346677778888899999999999987
Q ss_pred HHHc---------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717 447 VLEQ---------------------DDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKI 484 (503)
Q Consensus 447 ALkL---------------------dPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkL 484 (503)
|... ...+.-|+|.+|..|...|++.+|+..|.++..+
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 6532 2345669999999999999999999999886543
No 274
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.24 Score=50.77 Aligned_cols=79 Identities=23% Similarity=0.098 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
....+.+...+++..++|-++++.....|.. .+.+..+|+.||.++...=+.++|.+|+.++|+++|.-..+.-
T Consensus 229 ~tpLllNy~QC~L~~~e~yevleh~seiL~~------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 229 ITPLLLNYCQCLLKKEEYYEVLEHCSEILRH------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred hhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 3446778899999999999999999999987 6778999999999999999999999999999999997766655
Q ss_pred HHHHH
Q 010717 460 QRALL 464 (503)
Q Consensus 460 rlA~A 464 (503)
+.-.+
T Consensus 303 rElr~ 307 (329)
T KOG0545|consen 303 RELRL 307 (329)
T ss_pred HHHHH
Confidence 54333
No 275
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.44 E-value=0.3 Score=50.55 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HcCC--CCHHH
Q 010717 384 AKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVL----EQDD--TNVSV 457 (503)
Q Consensus 384 lk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekAL----kLdP--d~~kA 457 (503)
.+.+..++.-.++|.-.+..|.+.++.. .+.+..+...++.+.++.|+.+.|..+++.+- +++. ....+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~-----~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V 254 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYY-----PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMV 254 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhC-----CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHH
Confidence 4445666677889999999999999852 24556788999999999999999999999544 4443 23446
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717 458 LVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL 498 (503)
Q Consensus 458 lyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L 498 (503)
+.+.+.+|...++|.+|...|.+.+..||.+..+....+-|
T Consensus 255 ~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc 295 (366)
T KOG2796|consen 255 LMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC 295 (366)
T ss_pred HhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence 67778888888999999999999999999887665544433
No 276
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.36 E-value=0.36 Score=47.59 Aligned_cols=87 Identities=14% Similarity=0.108 Sum_probs=58.9
Q ss_pred CCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh-------cCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010717 376 PAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEK-------SGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVL 448 (503)
Q Consensus 376 ~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk-------~~ddpd~A~aysNrAlcylrLGdyeeALedaekAL 448 (503)
.....+..+..++-.|...++.++...++++|++...+ .....+...+++.+|.++.++|++++|++++.+++
T Consensus 113 ~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 113 KPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred CHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33356777788888888888855555555555544332 11133567888899999999999999999999999
Q ss_pred HcCCCCH-HHHHHHH
Q 010717 449 EQDDTNV-SVLVQRA 462 (503)
Q Consensus 449 kLdPd~~-kAlyrlA 462 (503)
...-... ..+..+|
T Consensus 193 ~~~~~s~~~~l~~~A 207 (214)
T PF09986_consen 193 GSKKASKEPKLKDMA 207 (214)
T ss_pred cCCCCCCcHHHHHHH
Confidence 7653332 2444444
No 277
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.28 E-value=0.23 Score=52.77 Aligned_cols=90 Identities=17% Similarity=0.110 Sum_probs=60.5
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHh-cCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 010717 387 KGVDNQKAGQYADAIKWLSWAVILLEK-SGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLY 465 (503)
Q Consensus 387 lGn~~fkqGDY~eAIk~YeKALeL~pk-~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay 465 (503)
-=..+|-.|+...-...+++.| ++ +.+.|-...+.--++.|+.+.|.|++|.+.+++++++++.+.=+...++.++
T Consensus 143 sh~a~fy~G~~~~~k~ai~kIi---p~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVl 219 (491)
T KOG2610|consen 143 SHDAHFYNGNQIGKKNAIEKII---PKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVL 219 (491)
T ss_pred hhhHHHhccchhhhhhHHHHhc---cccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHH
Confidence 3344555555555444444443 44 4455666677777889999999999999999999999887766666666666
Q ss_pred HHcCCHHHHHHHHH
Q 010717 466 ESMEKYKLGAEDLR 479 (503)
Q Consensus 466 ~~LGdyeeAle~Lq 479 (503)
.-.++++++++..+
T Consensus 220 em~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 220 EMNGRHKEGKEFMY 233 (491)
T ss_pred HhcchhhhHHHHHH
Confidence 66666666655544
No 278
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.15 E-value=0.82 Score=46.16 Aligned_cols=102 Identities=19% Similarity=0.101 Sum_probs=73.6
Q ss_pred HHHhCCHHHHHHHHHHHHHHHH-hcCC-ChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHc----CC---CC------
Q 010717 391 NQKAGQYADAIKWLSWAVILLE-KSGD-MATMMEVLSTRASCYKEVG-EYKKAVADCSKVLEQ----DD---TN------ 454 (503)
Q Consensus 391 ~fkqGDY~eAIk~YeKALeL~p-k~~d-dpd~A~aysNrAlcylrLG-dyeeALedaekALkL----dP---d~------ 454 (503)
+.+++|++.|..+|.|+-.+.. ..++ ....+.++++.|...+..+ ++++|+.++++++++ .. ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 4688999999999999987752 1111 2346778999999999999 999999999999887 21 11
Q ss_pred -HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHH
Q 010717 455 -VSVLVQRALLYESMEKYK---LGAEDLRTVLKIDPSNRIAR 492 (503)
Q Consensus 455 -~kAlyrlA~Ay~~LGdye---eAle~LqkALkLDPen~eAk 492 (503)
...+..++.+|...+.++ +|...++.+....|+.++..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 235666788998887754 45555555555567665554
No 279
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.95 E-value=0.59 Score=51.96 Aligned_cols=116 Identities=18% Similarity=0.143 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHH
Q 010717 380 TGAAAKNKGVDNQKA-----GQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVG-----EYKKAVADCSKVLE 449 (503)
Q Consensus 380 ~A~alk~lGn~~fkq-----GDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLG-----dyeeALedaekALk 449 (503)
...+...+|.+++.- +|.+.|+.+|+.|.+-..+.. ......+.+.+|.||++.. +++.|+.++.++-+
T Consensus 243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a-~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~ 321 (552)
T KOG1550|consen 243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA-TKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE 321 (552)
T ss_pred chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH-hhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence 355566677776654 689999999999987211100 0113446788999998843 78999999999998
Q ss_pred cCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717 450 QDDTNVSVLVQRALLYESME---KYKLGAEDLRTVLKIDPSNRIARSTIHRLTK 500 (503)
Q Consensus 450 LdPd~~kAlyrlA~Ay~~LG---dyeeAle~LqkALkLDPen~eAk~~La~Lqk 500 (503)
+. ++.++|++|.+|..-- ++.+|.++|..|.+. .+.++...+..|..
T Consensus 322 ~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~ 371 (552)
T KOG1550|consen 322 LG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYE 371 (552)
T ss_pred cC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHH
Confidence 85 7889999999998865 678999999998764 45666666666654
No 280
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.91 E-value=0.25 Score=42.03 Aligned_cols=59 Identities=15% Similarity=0.247 Sum_probs=48.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717 430 CYKEVGEYKKAVADCSKVLEQDDT---------NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488 (503)
Q Consensus 430 cylrLGdyeeALedaekALkLdPd---------~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen 488 (503)
-.++.++|.+|++.+.+.+..... ...+++++|.++...|++++|++.+++++++..+.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 346899999999999988866421 24578889999999999999999999999987543
No 281
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.82 E-value=0.15 Score=35.43 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEK 413 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk 413 (503)
+.++.++|..|...|+|++|++++++++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 567889999999999999999999999988543
No 282
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.78 E-value=1.6 Score=48.05 Aligned_cols=72 Identities=17% Similarity=0.161 Sum_probs=59.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHhhh
Q 010717 427 RASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPS----NRIARSTIHRLTKMV 502 (503)
Q Consensus 427 rAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPe----n~eAk~~La~LqklL 502 (503)
=|..++..|+|.++.-++.-..+++| .+.++..+|.|++..++|++|.++|.+ +-|+ +..+++++.-|++.+
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lCqKh~ 543 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQKALALCQKHL 543 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHHHHHHHHHhh
Confidence 35667889999999999999999999 999999999999999999999999874 3342 245567777776643
No 283
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.71 E-value=1.9 Score=41.10 Aligned_cols=70 Identities=9% Similarity=0.102 Sum_probs=59.4
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717 417 MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN---VSVLVQRALLYESMEKYKLGAEDLRTVLKIDP 486 (503)
Q Consensus 417 dpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~---~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP 486 (503)
+.....++..+|..|++.|++++|++.|.+++...-.. ...++++-.+.+..+++......+.++-.+-.
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~ 104 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE 104 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 45567889999999999999999999999988765322 56788889999999999999999999887643
No 284
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.43 E-value=1.1 Score=48.53 Aligned_cols=98 Identities=18% Similarity=0.126 Sum_probs=74.5
Q ss_pred HHHHHhCCHHHHHHHHHHHHHH--HHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 010717 389 VDNQKAGQYADAIKWLSWAVIL--LEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYE 466 (503)
Q Consensus 389 n~~fkqGDY~eAIk~YeKALeL--~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~ 466 (503)
...+..|||+.|+++.....+. +++..-+...+.++.-.+...+ .-+...|..+..++++|.|+...+-+.-+.+|+
T Consensus 196 e~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf 274 (531)
T COG3898 196 EARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAVVAARALF 274 (531)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHHHHHHH
Confidence 3456778999999888766543 2222223344555555554444 345889999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCC
Q 010717 467 SMEKYKLGAEDLRTVLKIDPS 487 (503)
Q Consensus 467 ~LGdyeeAle~LqkALkLDPe 487 (503)
..++..++-..++.+-+.+|.
T Consensus 275 ~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 275 RDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred hccchhhhhhHHHHHHhcCCC
Confidence 999999999999999999883
No 285
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.21 E-value=0.6 Score=39.90 Aligned_cols=67 Identities=19% Similarity=0.176 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ 450 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL 450 (503)
+......|..+|.+.+..+|+..++++++... +.++...++-.+..+|...|+|+++++++-+-+.+
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~---~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKIT---DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566788899999999999999999997633 35567788888899999999999999998776655
No 286
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.20 E-value=0.7 Score=52.51 Aligned_cols=75 Identities=11% Similarity=0.080 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010717 422 EVLSTRASCYKEVGEYKKAVADCSKVLEQDDT------NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTI 495 (503)
Q Consensus 422 ~aysNrAlcylrLGdyeeALedaekALkLdPd------~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~L 495 (503)
.++-|-|.-+++..+|..+++.|+..++.-+. .++....++.||..+.+.++|++++++|-+.||.++-.+..+
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 45667788889999999999999999976543 367888899999999999999999999999999987665554
Q ss_pred H
Q 010717 496 H 496 (503)
Q Consensus 496 a 496 (503)
-
T Consensus 435 ~ 435 (872)
T KOG4814|consen 435 L 435 (872)
T ss_pred H
Confidence 4
No 287
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.20 E-value=0.12 Score=52.27 Aligned_cols=60 Identities=20% Similarity=0.173 Sum_probs=54.0
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 010717 390 DNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNV 455 (503)
Q Consensus 390 ~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~ 455 (503)
...+.+|++.|.+.|.+|+++ .|....-|+.++....+.|+++.|.+.|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~l------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 456789999999999999999 456678999999999999999999999999999998763
No 288
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=92.99 E-value=0.42 Score=56.54 Aligned_cols=108 Identities=13% Similarity=0.059 Sum_probs=77.1
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHcCCCCHHH
Q 010717 385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEV----G---EYKKAVADCSKVLEQDDTNVSV 457 (503)
Q Consensus 385 k~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrL----G---dyeeALedaekALkLdPd~~kA 457 (503)
....+++...+.|++|+..|++..+-.| ....-.++.+..|...+++ + .+++|+..+++... -|.-+--
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 554 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFP---GRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLE 554 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCC---CcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchH
Confidence 3456778888999999999998876543 2223345666666666553 2 35566666654332 2445666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010717 458 LVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIH 496 (503)
Q Consensus 458 lyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La 496 (503)
|+-+|.+|..+++|+|-+++|.-|++..|.++++-....
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (932)
T PRK13184 555 YLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRD 593 (932)
T ss_pred HHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHH
Confidence 888899999999999999999999999999987754443
No 289
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.99 E-value=1.1 Score=49.59 Aligned_cols=103 Identities=6% Similarity=-0.075 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ 460 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr 460 (503)
...+...|.--..++++..|...|++||+. +.....+|...+.|-++.+....|.-.+++|+.+-|.--+.||.
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdv------d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK 146 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDV------DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK 146 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhc------ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH
Confidence 445666777777889999999999999987 45678999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 010717 461 RALLYESMEKYKLGAEDLRTVLKIDPSNR 489 (503)
Q Consensus 461 lA~Ay~~LGdyeeAle~LqkALkLDPen~ 489 (503)
.-.+-..+|+..-|...|++-+...|+..
T Consensus 147 Y~ymEE~LgNi~gaRqiferW~~w~P~eq 175 (677)
T KOG1915|consen 147 YIYMEEMLGNIAGARQIFERWMEWEPDEQ 175 (677)
T ss_pred HHHHHHHhcccHHHHHHHHHHHcCCCcHH
Confidence 99999999999999999999999999753
No 290
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.90 E-value=2 Score=44.37 Aligned_cols=66 Identities=12% Similarity=0.164 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717 419 TMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKI 484 (503)
Q Consensus 419 d~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkL 484 (503)
....++..++..+...++++.+++.+++.+.++|.+-++|+++=.+|+..|+...|+..|+++-++
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 457788899999999999999999999999999999999999999999999999999999988774
No 291
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.90 E-value=0.084 Score=55.82 Aligned_cols=68 Identities=13% Similarity=0.068 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT 453 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd 453 (503)
.+..+..++.++++.++...||.-|..|+++ +++.+.-|-.|+.++..+|+.++|..+++.+++++-+
T Consensus 147 ~a~l~~kr~sv~lkl~kp~~airD~d~A~ei------n~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 147 LAILYAKRASVFLKLKKPNAAIRDCDFAIEI------NPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred hhhhcccccceeeeccCCchhhhhhhhhhcc------CcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 5777888999999999999999999999999 5677778888999999999999999999999999743
No 292
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.81 E-value=1.9 Score=46.34 Aligned_cols=113 Identities=12% Similarity=0.058 Sum_probs=83.8
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhcCCCh--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCHHHHHHHH
Q 010717 389 VDNQKAGQYADAIKWLSWAVILLEKSGDMA--TMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ----DDTNVSVLVQRA 462 (503)
Q Consensus 389 n~~fkqGDY~eAIk~YeKALeL~pk~~ddp--d~A~aysNrAlcylrLGdyeeALedaekALkL----dPd~~kAlyrlA 462 (503)
++...+..|..|.+.+.+++..+.+.-+++ ....+..++=++|....+|+.-++..+..-.+ -++.....+.+|
T Consensus 107 dirkare~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~ya 186 (374)
T PF13281_consen 107 DIRKARERYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYA 186 (374)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHH
Confidence 344445566666666666666555433332 24556778888999999999999999988777 456677888899
Q ss_pred HHHHH---cCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHhh
Q 010717 463 LLYES---MEKYKLGAEDLRTV-LKIDPSNRIARSTIHRLTKM 501 (503)
Q Consensus 463 ~Ay~~---LGdyeeAle~LqkA-LkLDPen~eAk~~La~Lqkl 501 (503)
.++.. .|+.++|++.+..+ ......+.++.-.+.++.+-
T Consensus 187 fALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD 229 (374)
T PF13281_consen 187 FALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKD 229 (374)
T ss_pred HHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 99999 99999999999994 44556678888888877653
No 293
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=92.74 E-value=3.6 Score=40.86 Aligned_cols=94 Identities=18% Similarity=0.040 Sum_probs=72.6
Q ss_pred HHHHHHHHHHh-----C--CHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCC
Q 010717 384 AKNKGVDNQKA-----G--QYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKE----VGEYKKAVADCSKVLEQDD 452 (503)
Q Consensus 384 lk~lGn~~fkq-----G--DY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylr----LGdyeeALedaekALkLdP 452 (503)
.+.++..+..- - +...|+.+|.+|.++ ....+..+++.||.. ..++++|+.+|+++.+...
T Consensus 151 ~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~--------~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 151 MYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL--------GNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh--------cCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 55666665553 1 344789999998876 246788889988866 4579999999999999876
Q ss_pred CCHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHHhCCCC
Q 010717 453 TNVSVLVQRALLYESME---------------KYKLGAEDLRTVLKIDPSN 488 (503)
Q Consensus 453 d~~kAlyrlA~Ay~~LG---------------dyeeAle~LqkALkLDPen 488 (503)
..++++++ +++..+ +...|+..++++..+.+..
T Consensus 223 --~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 223 --GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred --HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 88999999 666555 8888999999988876654
No 294
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.73 E-value=1.1 Score=42.68 Aligned_cols=87 Identities=13% Similarity=-0.022 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAly 459 (503)
....+.....+.....+..++...+.....+ .|...++-..-+.+++..|++.+|+..++....-.+..+.+.-
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kA 82 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVL------RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKA 82 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHH
Confidence 4667778888888889999998888877777 4556677777888999999999999999998888888888888
Q ss_pred HHHHHHHHcCCHH
Q 010717 460 QRALLYESMEKYK 472 (503)
Q Consensus 460 rlA~Ay~~LGdye 472 (503)
.++.|++.++|.+
T Consensus 83 L~A~CL~al~Dp~ 95 (153)
T TIGR02561 83 LLALCLNAKGDAE 95 (153)
T ss_pred HHHHHHHhcCChH
Confidence 8899999998854
No 295
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.58 E-value=0.74 Score=50.91 Aligned_cols=97 Identities=13% Similarity=-0.008 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ 460 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr 460 (503)
+..+...+....++.+...|.+.+-.||-.+|+. .++-..-.+-+++++++.+...|++-|+..|.+-.+|..
T Consensus 404 aKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-------KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~k 476 (677)
T KOG1915|consen 404 AKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-------KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSK 476 (677)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-------hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHH
Confidence 3344444555555555555666665555544431 233333444566777777777777777777777777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 010717 461 RALLYESMEKYKLGAEDLRTVLKI 484 (503)
Q Consensus 461 lA~Ay~~LGdyeeAle~LqkALkL 484 (503)
.|..-..||+.+.|...|+-|+..
T Consensus 477 yaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcC
Confidence 777777777777777777666543
No 296
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.46 E-value=2.3 Score=47.24 Aligned_cols=99 Identities=19% Similarity=0.130 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCC----
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLE-QDDTN---- 454 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALk-LdPd~---- 454 (503)
.+..+..+|.....-+.|++|...|..|+++..+ ....+-+-.|+|..|++.++-+. +.++++ +.|.+
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~---~dl~a~~nlnlAi~YL~~~~~ed----~y~~ld~i~p~nt~s~ 438 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES---IDLQAFCNLNLAISYLRIGDAED----LYKALDLIGPLNTNSL 438 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH---HHHHHHHHHhHHHHHHHhccHHH----HHHHHHhcCCCCCCcc
Confidence 4556677888888889999999999999988543 22345566789999999877544 334443 34442
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 010717 455 ------VSVLVQRALLYESMEKYKLGAEDLRTVLKID 485 (503)
Q Consensus 455 ------~kAlyrlA~Ay~~LGdyeeAle~LqkALkLD 485 (503)
..++|..|.-.+..+++.||...+++.|++.
T Consensus 439 ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 439 SSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 3478888999999999999999999999987
No 297
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.30 E-value=1.3 Score=47.34 Aligned_cols=108 Identities=12% Similarity=-0.028 Sum_probs=77.0
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHH---HHHHHHH
Q 010717 388 GVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ-DDTNVS---VLVQRAL 463 (503)
Q Consensus 388 Gn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL-dPd~~k---AlyrlA~ 463 (503)
+.+.+.+|++.+|...+++.|+- -|.+..++..-=.+++.+|+.+.-+..+++++-. +++-+- ++=.++.
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF 183 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDD------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF 183 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHh------CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHh
Confidence 44455667777777777776654 3444445544556677788888888888888866 555533 3334688
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717 464 LYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM 501 (503)
Q Consensus 464 Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl 501 (503)
+++.+|-|++|.+.-+++++|++.+--+...+..+.++
T Consensus 184 gL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem 221 (491)
T KOG2610|consen 184 GLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEM 221 (491)
T ss_pred hHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHh
Confidence 89999999999999999999999987776666555443
No 298
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.12 E-value=0.83 Score=49.52 Aligned_cols=99 Identities=15% Similarity=0.111 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------C
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD--------D 452 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd--------P 452 (503)
-.++..+|.-|+..|+++.|++.|.++.+.+.. .......|.|+-.+-+.++++-.-+.+..+|...- .
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs---~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~ 226 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTS---AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQE 226 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc---hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHh
Confidence 456778999999999999999999998887654 34567788888899999999999999888887651 1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010717 453 TNVSVLVQRALLYESMEKYKLGAEDLRTVL 482 (503)
Q Consensus 453 d~~kAlyrlA~Ay~~LGdyeeAle~LqkAL 482 (503)
-.++.....|.++..+++|+.|..+|..+.
T Consensus 227 v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 227 VPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 134566777999999999999999987653
No 299
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.91 E-value=1.5 Score=46.96 Aligned_cols=107 Identities=19% Similarity=0.195 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH---cCCHHHHHHHHHHHH-HcCCCCH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKE---VGEYKKAVADCSKVL-EQDDTNV 455 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylr---LGdyeeALedaekAL-kLdPd~~ 455 (503)
..+...++=..|...++|+.=|++.+..-.+ +.. +-.....+...+|.++-+ .|+.++|+..+..++ ......+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~-p~~-~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~ 217 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEAL-PTC-DVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP 217 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc-Ccc-chhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh
Confidence 3445555555677777777777666554433 111 123345566778888888 999999999999955 4556788
Q ss_pred HHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCC
Q 010717 456 SVLVQRALLYESM---------EKYKLGAEDLRTVLKIDPSN 488 (503)
Q Consensus 456 kAlyrlA~Ay~~L---------GdyeeAle~LqkALkLDPen 488 (503)
+.+..+|.+|..+ ...++|+++|+++.+++|+.
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 9999999998653 24789999999999999743
No 300
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.90 E-value=2.2 Score=48.83 Aligned_cols=112 Identities=12% Similarity=0.056 Sum_probs=82.4
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----
Q 010717 379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT----- 453 (503)
Q Consensus 379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd----- 453 (503)
.-...+...|..|...++.++|...|++|++. ..+.-.+.+.+|++.|..-++..+++.|++..+.|...-..
T Consensus 385 s~~~Lw~~faklYe~~~~l~~aRvifeka~~V--~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~ 462 (835)
T KOG2047|consen 385 SPGTLWVEFAKLYENNGDLDDARVIFEKATKV--PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEY 462 (835)
T ss_pred ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC--CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhh
Confidence 34567888999999999999999999999876 33334567889999999999999999999998888754211
Q ss_pred -------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 010717 454 -------------NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIAR 492 (503)
Q Consensus 454 -------------~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk 492 (503)
..+.|-..+.....+|=++.....|.+++.|-=-.+++.
T Consensus 463 yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii 514 (835)
T KOG2047|consen 463 YDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQII 514 (835)
T ss_pred hcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHH
Confidence 123444456666667777777777888877755444443
No 301
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=91.40 E-value=1.5 Score=44.11 Aligned_cols=109 Identities=17% Similarity=0.172 Sum_probs=65.4
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHhcCCC------hhhHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHc----C-CCCHHHH
Q 010717 391 NQKAGQYADAIKWLSWAVILLEKSGDM------ATMMEVLSTRASCYKEVGEY-KKAVADCSKVLEQ----D-DTNVSVL 458 (503)
Q Consensus 391 ~fkqGDY~eAIk~YeKALeL~pk~~dd------pd~A~aysNrAlcylrLGdy-eeALedaekALkL----d-Pd~~kAl 458 (503)
++..|+|+.|+++...||+.....++. ...++-..+.+...+..|+- +-.+ .+....+ + |+.+.+.
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~--~~~~~~l~~~~dmpd~vrAK 170 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYF--LRVFLDLTTEWDMPDEVRAK 170 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHH--HHHHHHHHhcCCCChHHHHH
Confidence 356789999999999999874444331 12233344455555666652 2221 2222222 1 5556666
Q ss_pred HHHHHHHHH-----------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717 459 VQRALLYES-----------MEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502 (503)
Q Consensus 459 yrlA~Ay~~-----------LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL 502 (503)
+.+...+.. .++.++|+.+|+++++++|.- -++..+.+|++++
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~-GVK~~i~~l~~~l 224 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC-GVKKDIERLERRL 224 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHH
Confidence 655444433 357789999999999999864 3455555555543
No 302
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=91.39 E-value=2.7 Score=47.49 Aligned_cols=106 Identities=10% Similarity=-0.042 Sum_probs=83.5
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHcCCCCHHHHHHH----
Q 010717 387 KGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSK-VLEQDDTNVSVLVQR---- 461 (503)
Q Consensus 387 lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaek-ALkLdPd~~kAlyrl---- 461 (503)
+...+...++...|+-....++.. ++..+.++.+++......+....++..+.+ |..+.|++.+....+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 146 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSV------NPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFY 146 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhc------CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHH
Confidence 455556667777777777777766 667788999999988888877666655555 999999988766655
Q ss_pred --HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717 462 --ALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL 498 (503)
Q Consensus 462 --A~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L 498 (503)
+..+..+++-+++...+++++++.|++..+...+...
T Consensus 147 ~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 147 QLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 8899999999999999999999999997776665544
No 303
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=91.24 E-value=0.47 Score=53.50 Aligned_cols=103 Identities=15% Similarity=0.077 Sum_probs=85.7
Q ss_pred HHHHHHHH-HHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 010717 384 AKNKGVDN-QKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRA 462 (503)
Q Consensus 384 lk~lGn~~-fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA 462 (503)
+..++..| ..+|+..+|+.+|..|+.+.+. ...-.++..+|.++.+.|...+|--.+..|+.-.+....-+|.++
T Consensus 215 lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~----h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~ 290 (886)
T KOG4507|consen 215 LHNMASFYWRIKGEPYQAVECAMRALHFSSR----HNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLG 290 (886)
T ss_pred HHHHHHHHHHHcCChhhhhHHHHHHhhhCCc----ccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHH
Confidence 33444444 5689999999999999988543 223456777999999999999999889999988888888899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 010717 463 LLYESMEKYKLGAEDLRTVLKIDPSNRI 490 (503)
Q Consensus 463 ~Ay~~LGdyeeAle~LqkALkLDPen~e 490 (503)
.+|..+++|...+.+|..+++.+|....
T Consensus 291 ~i~aml~~~N~S~~~ydha~k~~p~f~q 318 (886)
T KOG4507|consen 291 NIYAMLGEYNHSVLCYDHALQARPGFEQ 318 (886)
T ss_pred HHHHHHhhhhhhhhhhhhhhccCcchhH
Confidence 9999999999999999999999996543
No 304
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.16 E-value=0.29 Score=36.00 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 010717 422 EVLSTRASCYKEVGEYKKAVADCSKVLEQD 451 (503)
Q Consensus 422 ~aysNrAlcylrLGdyeeALedaekALkLd 451 (503)
.+|..+|.+-+..++|++|+++|++||++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 356667777777777777777777777653
No 305
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.02 E-value=2.8 Score=45.63 Aligned_cols=106 Identities=14% Similarity=0.036 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCHHHH
Q 010717 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ----DDTNVSVL 458 (503)
Q Consensus 383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL----dPd~~kAl 458 (503)
.|+-+...+...++...-...+...+....--.+....+.+.+.+=.+|+.-+.|+.|-....+..-- +-+|+..+
T Consensus 171 ~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~ 250 (493)
T KOG2581|consen 171 LYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYL 250 (493)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHH
Confidence 34445555555666555444444444331111234456777777888999999999988887766511 12567788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717 459 VQRALLYESMEKYKLGAEDLRTVLKIDPSN 488 (503)
Q Consensus 459 yrlA~Ay~~LGdyeeAle~LqkALkLDPen 488 (503)
|.+|.+..-..+|..|.++|..+++..|.+
T Consensus 251 yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 251 YYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 899999999999999999999999999985
No 306
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.01 E-value=7.8 Score=36.93 Aligned_cols=79 Identities=11% Similarity=-0.045 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717 423 VLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM 501 (503)
Q Consensus 423 aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl 501 (503)
.+..+..+.+...+.+++...++...-+.|+........+.+++..++|.+|+..|+++..-.+..+..+..+..|...
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 3444455555677777777777777777777777777777777777777777777777776666666666666666544
No 307
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=90.24 E-value=0.82 Score=55.15 Aligned_cols=107 Identities=15% Similarity=0.112 Sum_probs=90.8
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----
Q 010717 379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKS--GDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD----- 451 (503)
Q Consensus 379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~--~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd----- 451 (503)
+.+.+|..++..+.+.+++++|+.+-.+|.-+.++. .+.+.....|.+++...+..++...|+..+.+++++.
T Consensus 971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~g 1050 (1236)
T KOG1839|consen 971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSG 1050 (1236)
T ss_pred hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccC
Confidence 368899999999999999999999999988665542 2356778889999999999999999999999998763
Q ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 010717 452 ---DTNVSVLVQRALLYESMEKYKLGAEDLRTVLKID 485 (503)
Q Consensus 452 ---Pd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLD 485 (503)
|.-+....++..++..+++++.|+++++.|+++.
T Consensus 1051 e~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1051 EDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred CCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4445566778889999999999999999999865
No 308
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=90.23 E-value=2.1 Score=42.72 Aligned_cols=68 Identities=21% Similarity=0.272 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVL 448 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekAL 448 (503)
......+|.+|++.|+|++|+++|+.+.....+.+=......++..+..|+.++++.++.+..+=+.+
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34456889999999999999999999976655433334566778889999999999999888775543
No 309
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=90.17 E-value=4.1 Score=43.24 Aligned_cols=77 Identities=14% Similarity=0.159 Sum_probs=63.0
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------c-----C------------CCC---HHHHHHHHHHHHH
Q 010717 417 MATMMEVLSTRASCYKEVGEYKKAVADCSKVLE---------Q-----D------------DTN---VSVLVQRALLYES 467 (503)
Q Consensus 417 dpd~A~aysNrAlcylrLGdyeeALedaekALk---------L-----d------------Pd~---~kAlyrlA~Ay~~ 467 (503)
.|.....+..++.++.++|+++.|.+.+++||= . + +++ -.++++....+..
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~ 115 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR 115 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence 567788899999999999999999999999872 1 1 112 2377888999999
Q ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHH
Q 010717 468 MEKYKLGAEDLRTVLKIDPS-NRIARS 493 (503)
Q Consensus 468 LGdyeeAle~LqkALkLDPe-n~eAk~ 493 (503)
.|-+.-|++.++-.+.+||. |+-...
T Consensus 116 RG~~rTAlE~~KlLlsLdp~~DP~g~l 142 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSLDPDEDPLGVL 142 (360)
T ss_pred cCcHHHHHHHHHHHHhcCCCCCcchhH
Confidence 99999999999999999998 654433
No 310
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.91 E-value=1.8 Score=47.55 Aligned_cols=105 Identities=11% Similarity=0.072 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-----ChhhHHHHHHHHHHHHHcCCH------HHHHHHHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGD-----MATMMEVLSTRASCYKEVGEY------KKAVADCSKVL 448 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~d-----dpd~A~aysNrAlcylrLGdy------eeALedaekAL 448 (503)
.+..++.+|..+++++.|.+|+.++-.|-+.+-.... -..++.+-..+..||+++++. +.-+..|++++
T Consensus 162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf 241 (568)
T KOG2561|consen 162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF 241 (568)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Confidence 3445788899999999999999998888766443211 112344455678899988763 23344445554
Q ss_pred HcC-------------CCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717 449 EQD-------------DTNV------SVLVQRALLYESMEKYKLGAEDLRTVLKI 484 (503)
Q Consensus 449 kLd-------------Pd~~------kAlyrlA~Ay~~LGdyeeAle~LqkALkL 484 (503)
... +..+ ..++..|.+.++.++-++|.++|+.+...
T Consensus 242 ~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 242 ERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred hhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 431 2222 23344599999999999999999987654
No 311
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=89.91 E-value=4.2 Score=44.35 Aligned_cols=96 Identities=10% Similarity=-0.036 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASC--YKEVGEYKKAVADCSKVLEQDDTNVSV 457 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlc--ylrLGdyeeALedaekALkLdPd~~kA 457 (503)
.+-.+...+...+-.|+|++|.+.|+..++- |. -..+-.||++ ..++|+++.|++|.+.+-.+.|.-.=+
T Consensus 119 epLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-------PE-tRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA 190 (531)
T COG3898 119 EPLIHLLEAQAALLEGDYEDARKKFEAMLDD-------PE-TRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWA 190 (531)
T ss_pred hHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-------hH-HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchH
Confidence 4556677889999999999999999887742 22 2233334433 357999999999999999999988777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717 458 LVQRALLYESMEKYKLGAEDLRTVLK 483 (503)
Q Consensus 458 lyrlA~Ay~~LGdyeeAle~LqkALk 483 (503)
....=...+..|+++.|++.++....
T Consensus 191 ~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 191 ARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 77777778889999999998875443
No 312
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.85 E-value=5.6 Score=39.52 Aligned_cols=98 Identities=16% Similarity=0.045 Sum_probs=67.9
Q ss_pred HHHHHHHHHhCCHH---HHHHHHHHHHHHHHhcCC---------------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010717 385 KNKGVDNQKAGQYA---DAIKWLSWAVILLEKSGD---------------MATMMEVLSTRASCYKEVGEYKKAVADCSK 446 (503)
Q Consensus 385 k~lGn~~fkqGDY~---eAIk~YeKALeL~pk~~d---------------dpd~A~aysNrAlcylrLGdyeeALedaek 446 (503)
...|-.|+...+-+ +|...|+++++....... ...-.-....++..+.+.+++++|+..++.
T Consensus 35 ~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~ 114 (207)
T COG2976 35 GLFGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQ 114 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 34556666665544 778888888876542111 111112234567788999999999999999
Q ss_pred HHHcCCC-CH--HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010717 447 VLEQDDT-NV--SVLVQRALLYESMEKYKLGAEDLRTVL 482 (503)
Q Consensus 447 ALkLdPd-~~--kAlyrlA~Ay~~LGdyeeAle~LqkAL 482 (503)
++..-.+ +. -+-.|++.++..++++++|+..+....
T Consensus 115 ~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~ 153 (207)
T COG2976 115 ALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK 153 (207)
T ss_pred HHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc
Confidence 9966433 33 366788999999999999999887543
No 313
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=89.84 E-value=5.2 Score=41.47 Aligned_cols=78 Identities=10% Similarity=-0.000 Sum_probs=53.8
Q ss_pred ChhhHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717 417 MATMMEVLSTRASCYKEVGE------------YKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKI 484 (503)
Q Consensus 417 dpd~A~aysNrAlcylrLGd------------yeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkL 484 (503)
.|.+..+|..+....-.+-. .+..+..|++||+.+|++.+.++.+=.+...+-+-++..+.+++++..
T Consensus 15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 55666666665544433322 456677788888888888877777777777777778888888888888
Q ss_pred CCCCHHHHHH
Q 010717 485 DPSNRIARST 494 (503)
Q Consensus 485 DPen~eAk~~ 494 (503)
+|.+..+-..
T Consensus 95 ~~~~~~LW~~ 104 (321)
T PF08424_consen 95 NPGSPELWRE 104 (321)
T ss_pred CCCChHHHHH
Confidence 8877655443
No 314
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=89.55 E-value=1.9 Score=44.42 Aligned_cols=78 Identities=21% Similarity=0.145 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 010717 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRA 462 (503)
Q Consensus 383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA 462 (503)
.+.++=..+...++++.|+..-++.+.+ .|.+..-+..+|.+|.+++.+.-|+++++..+++.|+.+.+-..+.
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l------~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~ 256 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDL------NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA 256 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhh------CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence 3445556788899999999999999998 4555667788999999999999999999999999999988776665
Q ss_pred HHHH
Q 010717 463 LLYE 466 (503)
Q Consensus 463 ~Ay~ 466 (503)
....
T Consensus 257 ~l~~ 260 (269)
T COG2912 257 QLLE 260 (269)
T ss_pred HHHH
Confidence 5543
No 315
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=89.20 E-value=5.5 Score=37.12 Aligned_cols=109 Identities=13% Similarity=0.038 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC--CC---hh----hHHHHHHHHHHHHHcCCHHHHHHHHHH----HHH
Q 010717 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSG--DM---AT----MMEVLSTRASCYKEVGEYKKAVADCSK----VLE 449 (503)
Q Consensus 383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~--dd---pd----~A~aysNrAlcylrLGdyeeALedaek----ALk 449 (503)
.+..+|+.+++.+++-.++-.|++|+.+.++.. .+ .+ ...-..|+|..|..+|+-+-.++|++. ++.
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 466789999999999999999999998877642 11 11 223367899999999999999999965 455
Q ss_pred cCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717 450 QDDTNVSVLVQRALL-YESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL 498 (503)
Q Consensus 450 LdPd~~kAlyrlA~A-y~~LGdyeeAle~LqkALkLDPen~eAk~~La~L 498 (503)
|-|..++.. ..+ ...+|--..|+-.| ++..|+ +++.+.+..+
T Consensus 83 LiPQCp~~~---C~afi~sLGCCk~ALl~F---~KRHPN-P~iA~~vq~i 125 (140)
T PF10952_consen 83 LIPQCPNTE---CEAFIDSLGCCKKALLDF---MKRHPN-PEIARLVQHI 125 (140)
T ss_pred hccCCCCcc---hHHHHHhhhccHHHHHHH---HHhCCC-HHHHHHHHhc
Confidence 656543321 222 22345555565555 466774 5555554443
No 316
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=88.93 E-value=3.8 Score=38.12 Aligned_cols=71 Identities=13% Similarity=0.191 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-Chh----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGD-MAT----MMEVLSTRASCYKEVGEYKKAVADCSKVLEQ 450 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~d-dpd----~A~aysNrAlcylrLGdyeeALedaekALkL 450 (503)
.+-++--+...+...|+|++++..-.+||.++.+-+. ..+ -..+.++++..+-.+|+.++|+..|+++-++
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4556777888899999999999999999988776433 112 2345678999999999999999999988654
No 317
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=88.80 E-value=2.6 Score=48.24 Aligned_cols=107 Identities=8% Similarity=0.113 Sum_probs=85.8
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC-------CCh------hhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010717 379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSG-------DMA------TMMEVLSTRASCYKEVGEYKKAVADCS 445 (503)
Q Consensus 379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~-------ddp------d~A~aysNrAlcylrLGdyeeALedae 445 (503)
+.+..|.+-|..-++..+++.|+++.+.|+.+ |+.+ ..| ....+|..++...-..|-++.....|+
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd 501 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 46888999999999999999999999999865 3221 111 234456777777777888888888999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717 446 KVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDP 486 (503)
Q Consensus 446 kALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP 486 (503)
+.|.|.-..++.-.+.|..|...+.++++.+.|++.+.|.+
T Consensus 502 riidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk 542 (835)
T KOG2047|consen 502 RIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFK 542 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC
Confidence 99999888889999999999999999999999999888864
No 318
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=88.52 E-value=2.2 Score=35.99 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEK 413 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk 413 (503)
.+..+...+..+-+.|+|.+|+.+|+++|+++-+
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q 38 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQ 38 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 4667778888999999999999999999987654
No 319
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=88.34 E-value=0.91 Score=48.02 Aligned_cols=82 Identities=11% Similarity=0.052 Sum_probs=70.9
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010717 418 ATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ-RALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIH 496 (503)
Q Consensus 418 pd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr-lA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La 496 (503)
+.+..+|...+....+.+-|.+.-..|.+|+..+|.+++.|.. .+.-|....+++.+...|+++|+++|+++.+..+.-
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 4567889988888888999999999999999999999998887 566788889999999999999999999987766655
Q ss_pred HHH
Q 010717 497 RLT 499 (503)
Q Consensus 497 ~Lq 499 (503)
+++
T Consensus 184 r~E 186 (435)
T COG5191 184 RME 186 (435)
T ss_pred HHH
Confidence 543
No 320
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=88.11 E-value=3.9 Score=39.99 Aligned_cols=62 Identities=19% Similarity=0.030 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 010717 400 AIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYES 467 (503)
Q Consensus 400 AIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~ 467 (503)
|+.+|.+|+.+.|. ....|+.+|.++...++.=+|+-+|-+++...--.+.+.-++...+..
T Consensus 1 A~~~Y~~A~~l~P~------~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPS------NGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TT------BSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCC------CCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67888999888554 447888888888888888888888888886654446677777666666
No 321
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.74 E-value=5.3 Score=41.57 Aligned_cols=96 Identities=18% Similarity=0.135 Sum_probs=81.5
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 010717 390 DNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVG-EYKKAVADCSKVLEQDDTNVSVLVQRALLYESM 468 (503)
Q Consensus 390 ~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLG-dyeeALedaekALkLdPd~~kAlyrlA~Ay~~L 468 (503)
++.+..+-..|+++-+.+|++ .|...++|.-|=.|+..++ ++.+-+++++.+++-+|++-++|..+-.+...+
T Consensus 52 I~~~~E~S~RAl~LT~d~i~l------NpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l 125 (318)
T KOG0530|consen 52 IIAKNEKSPRALQLTEDAIRL------NPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELL 125 (318)
T ss_pred HHhccccCHHHHHHHHHHHHh------CcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHh
Confidence 345566778899999999998 6677899988888877765 468889999999999999999999999999999
Q ss_pred CCHH-HHHHHHHHHHHhCCCCHHH
Q 010717 469 EKYK-LGAEDLRTVLKIDPSNRIA 491 (503)
Q Consensus 469 Gdye-eAle~LqkALkLDPen~eA 491 (503)
+++. .-++.++++|..|-+|--+
T Consensus 126 ~d~s~rELef~~~~l~~DaKNYHa 149 (318)
T KOG0530|consen 126 GDPSFRELEFTKLMLDDDAKNYHA 149 (318)
T ss_pred cCcccchHHHHHHHHhccccchhh
Confidence 9988 8899999999988877444
No 322
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=87.66 E-value=1.7 Score=42.40 Aligned_cols=62 Identities=16% Similarity=-0.018 Sum_probs=50.9
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717 440 AVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM 501 (503)
Q Consensus 440 ALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqkl 501 (503)
|+.+|++|+.+.|..-..|..+|.++...++.=+|+=+|.+++...-..+.+...|..+.+.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999998765567777777666543
No 323
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=87.51 E-value=2 Score=49.57 Aligned_cols=79 Identities=14% Similarity=0.157 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 010717 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRA 462 (503)
Q Consensus 383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA 462 (503)
++.++|..+.....|++|.++|.+.-.+ .+...|++++.+|++ ++.+...-|++.+.+-.+|
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~~~--------------e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a 859 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCGDT--------------ENQIECLYRLELFGE----LEVLARTLPEDSELLPVMA 859 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccch--------------HhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHH
Confidence 4444555555555555555555443321 234555555555554 2333333366655555566
Q ss_pred HHHHHcCCHHHHHHHHH
Q 010717 463 LLYESMEKYKLGAEDLR 479 (503)
Q Consensus 463 ~Ay~~LGdyeeAle~Lq 479 (503)
.++...|--++|+++|.
T Consensus 860 ~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 860 DMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHHHhhchHHHHHHHHH
Confidence 66655555555555543
No 324
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.40 E-value=2 Score=32.60 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=22.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717 458 LVQRALLYESMEKYKLGAEDLRTVLK 483 (503)
Q Consensus 458 lyrlA~Ay~~LGdyeeAle~LqkALk 483 (503)
.+.+|.+|+.+|+++.|.+.+++++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 46789999999999999999999984
No 325
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.36 E-value=10 Score=44.78 Aligned_cols=107 Identities=10% Similarity=-0.037 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc---CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKS---GDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN--- 454 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~---~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~--- 454 (503)
+......+-....+.+|.+|..+..++....+.. ......++.-..++.+.+..+++++|++.++.++..-|..
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 3445566777788899999999988887665431 1122345666778999999999999999999999876543
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 010717 455 --VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPS 487 (503)
Q Consensus 455 --~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPe 487 (503)
..++...+.+.+-.|++++|+...+.+.++.-.
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~ 529 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQ 529 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 346777899999999999999999998888443
No 326
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=87.35 E-value=1.9 Score=46.08 Aligned_cols=100 Identities=14% Similarity=0.116 Sum_probs=81.7
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCHHHHHH
Q 010717 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD-----DTNVSVLVQ 460 (503)
Q Consensus 386 ~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd-----Pd~~kAlyr 460 (503)
.+...|+..++|.+|+.+....+.-+.+..+.....+++..-+-.|+.+.+..+|...+..|.... |-..++-+-
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD 212 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD 212 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 356778999999999999999988878877778888899999999999999999999998887542 433444443
Q ss_pred H--HHHHHHcCCHHHHHHHHHHHHHhC
Q 010717 461 R--ALLYESMEKYKLGAEDLRTVLKID 485 (503)
Q Consensus 461 l--A~Ay~~LGdyeeAle~LqkALkLD 485 (503)
+ |..|..-++|+-|..+|.++++=.
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEgf 239 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEGF 239 (411)
T ss_pred HhccceeecccccchHHHHHHHHHccc
Confidence 3 788888899999999999998743
No 327
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.27 E-value=3.3 Score=46.09 Aligned_cols=95 Identities=19% Similarity=0.182 Sum_probs=72.3
Q ss_pred HHhCCHHHHHHHHHHHHHHHHhcCCCh--------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CC-------
Q 010717 392 QKAGQYADAIKWLSWAVILLEKSGDMA--------TMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD---DT------- 453 (503)
Q Consensus 392 fkqGDY~eAIk~YeKALeL~pk~~ddp--------d~A~aysNrAlcylrLGdyeeALedaekALkLd---Pd------- 453 (503)
+..|-|++|.++-+++|...++.+..+ ....++-++..|.+-.+++++|++.....+... |.
T Consensus 286 m~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~ 365 (629)
T KOG2300|consen 286 MPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAH 365 (629)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHh
Confidence 356778889998889988877655433 234457788999999999999999887766543 33
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717 454 NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDP 486 (503)
Q Consensus 454 ~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP 486 (503)
.+..++.+|.-....+.|+.|...|..++++--
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~ 398 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTE 398 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhh
Confidence 245667778777888889999999999998753
No 328
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=87.05 E-value=3.3 Score=41.20 Aligned_cols=92 Identities=14% Similarity=0.070 Sum_probs=66.3
Q ss_pred HHhCCHHHHHHH-HHHHHHHHHhcCCChhhHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 010717 392 QKAGQYADAIKW-LSWAVILLEKSGDMATMMEVLSTRASCYKE-----VGEYKKAVADCSKVLEQDDTNVSVLVQRALLY 465 (503)
Q Consensus 392 fkqGDY~eAIk~-YeKALeL~pk~~ddpd~A~aysNrAlcylr-----LGdyeeALedaekALkLdPd~~kAlyrlA~Ay 465 (503)
...++|.++|+. |++|.++..++-++...+..++.++..++. .+++.+|++.+..+.. -+.+.++.+++.++
T Consensus 38 ~lLgdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~ 115 (248)
T KOG4014|consen 38 QLLGDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLH 115 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhh
Confidence 344566666643 777777777666666677777778776654 3467888888888776 45788999999888
Q ss_pred HHcC-------CHHHHHHHHHHHHHhC
Q 010717 466 ESME-------KYKLGAEDLRTVLKID 485 (503)
Q Consensus 466 ~~LG-------dyeeAle~LqkALkLD 485 (503)
..-. +.++|+++++++-.+.
T Consensus 116 ~~g~~~r~~dpd~~Ka~~y~traCdl~ 142 (248)
T KOG4014|consen 116 WNGEKDRKADPDSEKAERYMTRACDLE 142 (248)
T ss_pred ccCcCCccCCCCcHHHHHHHHHhccCC
Confidence 6533 2778899998887765
No 329
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.72 E-value=3.8 Score=41.69 Aligned_cols=61 Identities=15% Similarity=-0.018 Sum_probs=34.5
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 010717 388 GVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN 454 (503)
Q Consensus 388 Gn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~ 454 (503)
..++.+.....+||...++-++. +|.++.....+=..|.-.|++++|+..++.|-.+.|+.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVka------kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKA------KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhc------CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 34556666666666665555544 33444444444455555666666666666666666654
No 330
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=86.66 E-value=5.8 Score=48.28 Aligned_cols=108 Identities=21% Similarity=0.155 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH--------------------------
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKE-------------------------- 433 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylr-------------------------- 433 (503)
..+..+.+|+.++..|+|.+|++.|.+|++++....|.-=.+.++-.++.|.+-
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~~ 320 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTSS 320 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccCc
Confidence 466788899999999999999999999999987665422223333333333211
Q ss_pred -------------------------------------cCCHHHHHHHHHHHHHcC----CC--CHHHHHHHHHHHHHcC-
Q 010717 434 -------------------------------------VGEYKKAVADCSKVLEQD----DT--NVSVLVQRALLYESME- 469 (503)
Q Consensus 434 -------------------------------------LGdyeeALedaekALkLd----Pd--~~kAlyrlA~Ay~~LG- 469 (503)
...+++|+.+|+++.... |. ..+++++.+..+..+.
T Consensus 321 ~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~ 400 (1185)
T PF08626_consen 321 SSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHL 400 (1185)
T ss_pred cCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhc
Confidence 123677888888776332 32 2467778888877777
Q ss_pred -------------------CHHHHHHHHHHHHHhCCC
Q 010717 470 -------------------KYKLGAEDLRTVLKIDPS 487 (503)
Q Consensus 470 -------------------dyeeAle~LqkALkLDPe 487 (503)
...++.+.+.+++.+...
T Consensus 401 ~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~ 437 (1185)
T PF08626_consen 401 SDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLK 437 (1185)
T ss_pred ccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhh
Confidence 778888888888876653
No 331
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.58 E-value=3.8 Score=47.97 Aligned_cols=105 Identities=16% Similarity=0.167 Sum_probs=62.9
Q ss_pred CCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH------hcCCChhh-----------------HHHHHHHHHHHH
Q 010717 376 PAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLE------KSGDMATM-----------------MEVLSTRASCYK 432 (503)
Q Consensus 376 ~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~p------k~~ddpd~-----------------A~aysNrAlcyl 432 (503)
+.+..+..++..|+.+|++|+|++|+.+|-++|..++ +..+.... ..-...+-.||.
T Consensus 363 d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYi 442 (933)
T KOG2114|consen 363 DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYI 442 (933)
T ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHH
Confidence 4445677888999999999999999999999884321 21111000 000122457888
Q ss_pred HcCCHHHHHHHHHH------------HHHcCC--CCHH-HHH----------HHHHHHHHcCCHHHHHHHHHH
Q 010717 433 EVGEYKKAVADCSK------------VLEQDD--TNVS-VLV----------QRALLYESMEKYKLGAEDLRT 480 (503)
Q Consensus 433 rLGdyeeALedaek------------ALkLdP--d~~k-Aly----------rlA~Ay~~LGdyeeAle~Lqk 480 (503)
++++.++-.++.++ ++++-. +... |+| .+=.++..+++|++|++++..
T Consensus 443 Klkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 443 KLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKHEWVLDILLEDLHNYEEALRYISS 515 (933)
T ss_pred HhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHHHhcCHHHHHHHHhc
Confidence 88887776555433 333211 1111 111 134456778899999988764
No 332
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=86.56 E-value=1 Score=33.12 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 010717 456 SVLVQRALLYESMEKYKLGAEDLRTVLKID 485 (503)
Q Consensus 456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLD 485 (503)
++|.++|.+-+..++|++|+++|+++|+|.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999873
No 333
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=86.45 E-value=4.7 Score=42.49 Aligned_cols=100 Identities=17% Similarity=0.139 Sum_probs=81.3
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHH
Q 010717 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ-----DDTNVSVLVQ 460 (503)
Q Consensus 386 ~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL-----dPd~~kAlyr 460 (503)
.+...+++.++|.+|+....-.+.-+.+..+.+...++|..-+.+|.+..+..++...+..|..+ .|...++.+.
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lD 209 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLD 209 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHH
Confidence 35667899999999999999888877887778888899999999999999999999888887754 3555555554
Q ss_pred H--HHHHHHcCCHHHHHHHHHHHHHhC
Q 010717 461 R--ALLYESMEKYKLGAEDLRTVLKID 485 (503)
Q Consensus 461 l--A~Ay~~LGdyeeAle~LqkALkLD 485 (503)
+ |..++.-.+|.-|..+|-++++-.
T Consensus 210 L~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 210 LLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred HhccceeeccccchhHHHHHHHHHhcc
Confidence 4 777888889999999988887643
No 334
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.40 E-value=2.2 Score=42.33 Aligned_cols=74 Identities=16% Similarity=0.170 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHcCCHH
Q 010717 397 YADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT----NVSVLVQRALLYESMEKYK 472 (503)
Q Consensus 397 Y~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd----~~kAlyrlA~Ay~~LGdye 472 (503)
=++|.+.|.++-. .+ .-..+++.+.+|..|. ..+.++|++.+.++|++... +++.+.-++.+|+.+++++
T Consensus 122 d~~A~~~fL~~E~----~~-~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 122 DQEALRRFLQLEG----TP-ELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred cHHHHHHHHHHcC----CC-CCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 3556666554431 11 2345778888877775 66788888888888887532 4778888888888888888
Q ss_pred HHHH
Q 010717 473 LGAE 476 (503)
Q Consensus 473 eAle 476 (503)
+|.-
T Consensus 196 ~AYi 199 (203)
T PF11207_consen 196 QAYI 199 (203)
T ss_pred hhhh
Confidence 8754
No 335
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=86.23 E-value=4 Score=45.09 Aligned_cols=61 Identities=16% Similarity=0.166 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKV 447 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekA 447 (503)
..+-....+.-+|.+|+|.+++-+-.+..++ .| ...+|-.+|.|++...+|++|..++...
T Consensus 461 eian~LaDAEyLysqgey~kc~~ys~WL~~i------aP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 461 EIANFLADAEYLYSQGEYHKCYLYSSWLTKI------AP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHh------CC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 3455566788889999999999999999988 34 4688999999999999999999998654
No 336
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=86.11 E-value=4.3 Score=47.75 Aligned_cols=79 Identities=14% Similarity=0.083 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHcCCCCHHHHHH----------HHH
Q 010717 404 LSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKV----------LEQDDTNVSVLVQ----------RAL 463 (503)
Q Consensus 404 YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekA----------LkLdPd~~kAlyr----------lA~ 463 (503)
+.+|+++.+. .+.-+.-..|++.+..+...++.+.||++|+|+ |+-+|...+-|.+ -|+
T Consensus 842 w~eA~eiAE~-~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgq 920 (1416)
T KOG3617|consen 842 WSEAFEIAET-KDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQ 920 (1416)
T ss_pred HHHHHHHHhh-ccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHH
Confidence 3445555432 223344567888999888999999999999874 3334544444443 377
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 010717 464 LYESMEKYKLGAEDLRTVLK 483 (503)
Q Consensus 464 Ay~~LGdyeeAle~LqkALk 483 (503)
.+...|+.+.|+..|..+-.
T Consensus 921 YlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 921 YLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHhcccchHHHHHHHHHhhh
Confidence 88888998888888877644
No 337
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.10 E-value=15 Score=41.32 Aligned_cols=99 Identities=16% Similarity=0.092 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC-C---C----------------hhhHHHHHHHHHHHHHcCCHHHH
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSG-D---M----------------ATMMEVLSTRASCYKEVGEYKKA 440 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~-d---d----------------pd~A~aysNrAlcylrLGdyeeA 440 (503)
+-++..-|..+...+..+.|.++++++++++.+.. . . .....++..++.|.+-++++.+|
T Consensus 301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a 380 (608)
T PF10345_consen 301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA 380 (608)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence 33455557888888888899999999999887643 0 0 01233455678888899999999
Q ss_pred HHHHHHHHHcC---C------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010717 441 VADCSKVLEQD---D------TNVSVLVQRALLYESMEKYKLGAEDLR 479 (503)
Q Consensus 441 LedaekALkLd---P------d~~kAlyrlA~Ay~~LGdyeeAle~Lq 479 (503)
....+.+.... | -.+..+|..|..+...|+.+.|+..|+
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 98888777653 2 236789999999999999999999998
No 338
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=86.10 E-value=4 Score=34.36 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLE 412 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~p 412 (503)
.+..+..++..+-+.|+|++|+.+|.+||+++-
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~ 37 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLI 37 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 466777889999999999999999999998754
No 339
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=86.05 E-value=10 Score=40.52 Aligned_cols=66 Identities=15% Similarity=0.086 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKE--VGEYKKAVADCSKVLE 449 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylr--LGdyeeALedaekALk 449 (503)
........+..+|...+|..|.++|...+..++ .... ...+..++.+|.. .-+|++|.+.+++++.
T Consensus 130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~---~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 130 FGDREWRRAKELFNRYDYGAAARILEELLRRLP---GREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---chhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 445567788999999999999999999886422 1122 5677777777765 4568999999987765
No 340
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=85.96 E-value=7.1 Score=42.65 Aligned_cols=111 Identities=19% Similarity=0.213 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--CCChhhHHHH--HHHHHHH-------HHcCCH-HHHHHHHHHHHHc
Q 010717 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKS--GDMATMMEVL--STRASCY-------KEVGEY-KKAVADCSKVLEQ 450 (503)
Q Consensus 383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~--~ddpd~A~ay--sNrAlcy-------lrLGdy-eeALedaekALkL 450 (503)
.....|..++..|+|.+|++.|+..|..++-. .......++. ..++.-| ++.++. +..+++.++.++|
T Consensus 206 ~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lEL 285 (422)
T PF06957_consen 206 ERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLEL 285 (422)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHH
Confidence 34557899999999999999999998776521 1111112221 1111111 222221 1222333333333
Q ss_pred ---------CCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 010717 451 ---------DDTNVSVLVQRALL-YESMEKYKLGAEDLRTVLKIDPSNRIARS 493 (503)
Q Consensus 451 ---------dPd~~kAlyrlA~A-y~~LGdyeeAle~LqkALkLDPen~eAk~ 493 (503)
.|.+...-++.|+- .+++++|.-|....++.|++.|....+++
T Consensus 286 AAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~q 338 (422)
T PF06957_consen 286 AAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQ 338 (422)
T ss_dssp HHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHH
Confidence 33333333444443 46689999999999999999998865443
No 341
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=84.93 E-value=2.7 Score=30.47 Aligned_cols=32 Identities=16% Similarity=0.054 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCC
Q 010717 456 SVLVQRALLYESMEKYKLGAED--LRTVLKIDPS 487 (503)
Q Consensus 456 kAlyrlA~Ay~~LGdyeeAle~--LqkALkLDPe 487 (503)
+.++.+|..+...|+|++|++. |+-+..++++
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3455566666666666666666 3355555554
No 342
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.91 E-value=19 Score=35.77 Aligned_cols=99 Identities=9% Similarity=-0.048 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCCHHHHHHH
Q 010717 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVL-EQDDTNVSVLVQR 461 (503)
Q Consensus 383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekAL-kLdPd~~kAlyrl 461 (503)
+....+.+...+|+-.+|+..|.++-.-.+ .+ ....-.+...-+.++...|-|++-....+..- .-+|--..+.-.+
T Consensus 96 A~mr~at~~a~kgdta~AV~aFdeia~dt~-~P-~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEAL 173 (221)
T COG4649 96 ARMRAATLLAQKGDTAAAVAAFDEIAADTS-IP-QIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREAL 173 (221)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHhccCC-Cc-chhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHH
Confidence 445567788889999999999988754311 11 12223344555677777888887666554322 1123334456667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 010717 462 ALLYESMEKYKLGAEDLRTVLK 483 (503)
Q Consensus 462 A~Ay~~LGdyeeAle~LqkALk 483 (503)
|.+-++.|++.+|..+|..+..
T Consensus 174 glAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 174 GLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hHHHHhccchHHHHHHHHHHHc
Confidence 8889999999999999998776
No 343
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=84.76 E-value=10 Score=40.75 Aligned_cols=102 Identities=12% Similarity=-0.076 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHH
Q 010717 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGE--------------YKKAVADCSKVL 448 (503)
Q Consensus 383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGd--------------yeeALedaekAL 448 (503)
.++.+|+.+|..+||+.|+..|+.+..-...+..--..+.++.-.+.|++..+. ++.|+..|.++-
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 467789999999999999999999886433222122344455566777776663 234444454431
Q ss_pred H----cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717 449 E----QDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKI 484 (503)
Q Consensus 449 k----LdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkL 484 (503)
. ....-.++.+..+.++..++.|.+|...+-++...
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 1 11123556667788888999999988887777765
No 344
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=84.66 E-value=4.5 Score=36.57 Aligned_cols=64 Identities=13% Similarity=0.172 Sum_probs=50.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHH
Q 010717 427 RASCYKEVGEYKKAVADCSKVLEQDDTNV---SVLVQRALLYESMEK-----------YKLGAEDLRTVLKIDPSNRI 490 (503)
Q Consensus 427 rAlcylrLGdyeeALedaekALkLdPd~~---kAlyrlA~Ay~~LGd-----------yeeAle~LqkALkLDPen~e 490 (503)
++.-+++.|++-+|++..+..+..+.+.. -.++..|.+++.+.. .-.++++|.++..+.|....
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~ 79 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAH 79 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHH
Confidence 56778899999999999999998887665 456667888877653 34488999999999987643
No 345
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=84.22 E-value=12 Score=40.41 Aligned_cols=64 Identities=17% Similarity=0.053 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcC--CHHHHHHHHH
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVG--EYKKAVADCS 445 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLG--dyeeALedae 445 (503)
......++..++.+.+|..|.+.|.+++..... +........+..++.||.... ++++|.+.++
T Consensus 130 ~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~-~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 130 GNTEQGYARRAINAFDYLFAHARLETLLRRLLS-AVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHhcccC-hhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 334445677899999999999999999865221 223456777888888887654 5789999888
No 346
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=83.16 E-value=5.4 Score=37.86 Aligned_cols=53 Identities=11% Similarity=0.146 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 010717 437 YKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRI 490 (503)
Q Consensus 437 yeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~e 490 (503)
.+..++..++.++..| ++..+.+++.++..+|+.++|.+..+++..+.|.+.-
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~~ 179 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPADEF 179 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHHH
Confidence 4455666677777777 6788999999999999999999999999999995433
No 347
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=82.97 E-value=1.7 Score=47.04 Aligned_cols=59 Identities=12% Similarity=0.140 Sum_probs=45.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH--------HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717 425 STRASCYKEVGEYKKAVADCSKVL--------EQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLK 483 (503)
Q Consensus 425 sNrAlcylrLGdyeeALedaekAL--------kLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALk 483 (503)
..+..++..+|||..|++.++..- +.-+.+...+|..|.+|+-++||.+|++.|..+|-
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778999999999876421 11244677899999999999999999999988764
No 348
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=82.58 E-value=3.9 Score=44.37 Aligned_cols=63 Identities=21% Similarity=0.115 Sum_probs=46.0
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHh---cCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717 386 NKGVDNQKAGQYADAIKWLSWAVILLEK---SGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLE 449 (503)
Q Consensus 386 ~lGn~~fkqGDY~eAIk~YeKALeL~pk---~~ddpd~A~aysNrAlcylrLGdyeeALedaekALk 449 (503)
-+-.++.-.|||..|++.++.. ++.++ ....+-...+++..|.||+.+++|.+|++.+..+|.
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677789999999987542 22111 111344567788899999999999999999999874
No 349
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.42 E-value=5 Score=42.27 Aligned_cols=62 Identities=15% Similarity=0.095 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010717 421 MEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVL 482 (503)
Q Consensus 421 A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkAL 482 (503)
..++..-+..|++.|.+.+|++.+++++.++|-+-..+..+-.+|..+||--.|+..|++.-
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34555668889999999999999999999999999999999999999999777777666543
No 350
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=82.33 E-value=8.1 Score=46.14 Aligned_cols=95 Identities=12% Similarity=0.023 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-------HHHHHHHHHHHcCCHHHHH
Q 010717 403 WLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVS-------VLVQRALLYESMEKYKLGA 475 (503)
Q Consensus 403 ~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~k-------AlyrlA~Ay~~LGdyeeAl 475 (503)
.|.+||.-..+....+.-.--|..-|++|.++++|+|-++.+..|++..|.++. ..||+-.+++.. -..|+
T Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 611 (932)
T PRK13184 534 DFTQALSEFSYLHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKH--RREAL 611 (932)
T ss_pred HHHHHHHHHHHhcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 344444433332223333345778899999999999999999999999988865 344554444443 35678
Q ss_pred HHHHHHHHhCCCCHHH---HHHHHHHH
Q 010717 476 EDLRTVLKIDPSNRIA---RSTIHRLT 499 (503)
Q Consensus 476 e~LqkALkLDPen~eA---k~~La~Lq 499 (503)
....-++.+.|+.... ++.+..++
T Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (932)
T PRK13184 612 VFMLLALWIAPEKISSREEEKFLEILY 638 (932)
T ss_pred HHHHHHHHhCcccccchHHHHHHHHHH
Confidence 8888899999986443 44444443
No 351
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.27 E-value=1.6 Score=28.85 Aligned_cols=23 Identities=13% Similarity=-0.091 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 010717 457 VLVQRALLYESMEKYKLGAEDLR 479 (503)
Q Consensus 457 AlyrlA~Ay~~LGdyeeAle~Lq 479 (503)
+++.+|.+|..+|++++|++.++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45555666666666666655543
No 352
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=81.90 E-value=9.3 Score=32.02 Aligned_cols=33 Identities=15% Similarity=0.286 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLE 412 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~p 412 (503)
.+..+...|..+-+.|+|.+|+.+|.++|+++-
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~ 37 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLM 37 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 455677788888999999999999999998754
No 353
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.80 E-value=9.2 Score=37.99 Aligned_cols=69 Identities=9% Similarity=0.095 Sum_probs=47.4
Q ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHhh
Q 010717 431 YKEVGEYKKAVADCSKVLEQD-DTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN----RIARSTIHRLTKM 501 (503)
Q Consensus 431 ylrLGdyeeALedaekALkLd-Pd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen----~eAk~~La~Lqkl 501 (503)
|.+.|+ ++|++.+-++-... -+.++..+.+|..|. ..+.++|+..|.++|.+...+ +++...|..+...
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK 190 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 344455 56666654433221 256888888888877 458899999999999997654 7777777766543
No 354
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.80 E-value=15 Score=43.55 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh----cCCChhhHHHHHHHHHHH------------HHcCCHHHH--HH
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEK----SGDMATMMEVLSTRASCY------------KEVGEYKKA--VA 442 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk----~~ddpd~A~aysNrAlcy------------lrLGdyeeA--Le 442 (503)
...-.++|..+...|++.+|+++|...|-.++- ...+...+.-+..++.-| +.....+++ +.
T Consensus 991 l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElA 1070 (1202)
T KOG0292|consen 991 LNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELA 1070 (1202)
T ss_pred HHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHH
Confidence 334456788899999999999999999865542 111222233333333222 112234444 22
Q ss_pred HHHHHHHcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010717 443 DCSKVLEQDDTNVS-VLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIH 496 (503)
Q Consensus 443 daekALkLdPd~~k-AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La 496 (503)
.|=.-.+|.|-+.. ++...-.+++++++|+.|....++.|++.|..+.++..-.
T Consensus 1071 aYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rk 1125 (1202)
T KOG0292|consen 1071 AYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARK 1125 (1202)
T ss_pred HHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 22222244454433 3333345688999999999999999999998766654443
No 355
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=81.79 E-value=2.7 Score=47.24 Aligned_cols=66 Identities=18% Similarity=0.188 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717 436 EYKKAVADCSKVLEQDDTNVSVLVQRALLYESM---EKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM 501 (503)
Q Consensus 436 dyeeALedaekALkLdPd~~kAlyrlA~Ay~~L---GdyeeAle~LqkALkLDPen~eAk~~La~Lqkl 501 (503)
+...|+.+|.+++..-|.....|.+++.+|++. ++.-.|+.++..+++++|-...++..|.++...
T Consensus 389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~e 457 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNE 457 (758)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHH
Confidence 456889999999999999999999999999886 466779999999999999887777777666544
No 356
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=81.54 E-value=10 Score=40.74 Aligned_cols=112 Identities=16% Similarity=0.221 Sum_probs=80.4
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHcCCCCHHHHHHHH
Q 010717 385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKK--AVADCSKVLEQDDTNVSVLVQRA 462 (503)
Q Consensus 385 k~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyee--ALedaekALkLdPd~~kAlyrlA 462 (503)
..-|..+...+||..|..||-+|.|-.....++..-...+--+-+|-..++..++ ++-..+.++++.-....++...+
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavA 292 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVA 292 (411)
T ss_pred HhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHH
Confidence 3446667777999999999999998654444333334444445667777777665 45556778888888899999999
Q ss_pred HHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717 463 LLYES--MEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT 499 (503)
Q Consensus 463 ~Ay~~--LGdyeeAle~LqkALkLDPen~eAk~~La~Lq 499 (503)
.++.. +++|++|+..|..-|.-|| .++..+..+.
T Consensus 293 eA~~nRSLkdF~~AL~~yk~eL~~D~---ivr~Hl~~Ly 328 (411)
T KOG1463|consen 293 EAFGNRSLKDFEKALADYKKELAEDP---IVRSHLQSLY 328 (411)
T ss_pred HHhcCCcHHHHHHHHHHhHHHHhcCh---HHHHHHHHHH
Confidence 88854 7899999999998887665 4454444443
No 357
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.40 E-value=23 Score=37.27 Aligned_cols=89 Identities=19% Similarity=0.075 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHH---------------HHHHHHh-------------cCCChhhHHHHHHHHHHHH
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSW---------------AVILLEK-------------SGDMATMMEVLSTRASCYK 432 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeK---------------ALeL~pk-------------~~ddpd~A~aysNrAlcyl 432 (503)
.++...++.+|...|++++|...|.. .|+++.+ ...+|++..+.+.++..|.
T Consensus 168 ~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~ 247 (304)
T COG3118 168 SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLH 247 (304)
T ss_pred chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 55677788899999998887776643 2444332 1236778889999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHcC
Q 010717 433 EVGEYKKAVADCSKVLEQDDTNV--SVLVQRALLYESME 469 (503)
Q Consensus 433 rLGdyeeALedaekALkLdPd~~--kAlyrlA~Ay~~LG 469 (503)
..|++++|++.+-..++.+..+- .+.-++-.++...|
T Consensus 248 ~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 248 LVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 99999999999988888775542 33333444444444
No 358
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=81.12 E-value=12 Score=42.39 Aligned_cols=94 Identities=14% Similarity=0.028 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010717 400 AIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLR 479 (503)
Q Consensus 400 AIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~Lq 479 (503)
|+..|..-+.+ .+..+...-.+. ++..+..+++...++...+.++..+|++..++.+++.++...+....++..+.
T Consensus 50 ~~~a~~~~~~~---~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~ 125 (620)
T COG3914 50 AIYALLLGIAI---NDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADIS 125 (620)
T ss_pred HHHHHHccCcc---CCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHH
Confidence 55555555543 122333333333 78888899999999999999999999999999999999999888777777666
Q ss_pred H-HHHhCCCCHHHHHHHHH
Q 010717 480 T-VLKIDPSNRIARSTIHR 497 (503)
Q Consensus 480 k-ALkLDPen~eAk~~La~ 497 (503)
+ ++++.|.+.++...+..
T Consensus 126 ~~a~~~~~~~~~~~~~~~~ 144 (620)
T COG3914 126 EIAEWLSPDNAEFLGHLIR 144 (620)
T ss_pred HHHHhcCcchHHHHhhHHH
Confidence 6 89999999888777633
No 359
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=80.87 E-value=12 Score=30.05 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLE 412 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~p 412 (503)
.+..+...|..+-..|+|.+|+++|.+|++++-
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~ 36 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLM 36 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 355677788888899999999999999998654
No 360
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=80.35 E-value=8.2 Score=41.39 Aligned_cols=80 Identities=14% Similarity=0.067 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717 422 EVLSTRASCYKEVGEYKKAVADCSKVLEQD--DTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT 499 (503)
Q Consensus 422 ~aysNrAlcylrLGdyeeALedaekALkLd--Pd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq 499 (503)
.+-.|++.+..+..-.+.++...+.....- ..+.-.+-.+|..+..+|+.++|.+.|++++.+.++..+....+.++.
T Consensus 330 vV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~~ 409 (415)
T COG4941 330 VVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRLD 409 (415)
T ss_pred eEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 355677777776666777777776655431 223345556899999999999999999999999999888877777665
Q ss_pred hh
Q 010717 500 KM 501 (503)
Q Consensus 500 kl 501 (503)
.+
T Consensus 410 ~l 411 (415)
T COG4941 410 RL 411 (415)
T ss_pred Hh
Confidence 44
No 361
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=80.08 E-value=6.6 Score=36.69 Aligned_cols=53 Identities=17% Similarity=0.105 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Q 010717 421 MEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKL 473 (503)
Q Consensus 421 A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyee 473 (503)
......++.-.+..|+|.-|++.++.++..+|++.++...++.+|..++.-.+
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 45666788888889999999999999999999998888888888888876444
No 362
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.65 E-value=14 Score=31.72 Aligned_cols=63 Identities=17% Similarity=0.024 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717 422 EVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVS---VLVQRALLYESMEKYKLGAEDLRTVLKI 484 (503)
Q Consensus 422 ~aysNrAlcylrLGdyeeALedaekALkLdPd~~k---AlyrlA~Ay~~LGdyeeAle~LqkALkL 484 (503)
.-....++-++...+.++|+...+++|+..++... ++=.+..+|+..|+|++.+++-..-+.+
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677778999999999999999998877654 3334588899999999999886655544
No 363
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=79.50 E-value=16 Score=40.11 Aligned_cols=19 Identities=5% Similarity=-0.204 Sum_probs=9.6
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 010717 463 LLYESMEKYKLGAEDLRTV 481 (503)
Q Consensus 463 ~Ay~~LGdyeeAle~LqkA 481 (503)
.+++.+|++++.++.|.+.
T Consensus 410 ~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 410 QAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHc
Confidence 3445556666666555443
No 364
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.20 E-value=15 Score=41.39 Aligned_cols=67 Identities=16% Similarity=0.070 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---C--CCC--HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC
Q 010717 422 EVLSTRASCYKEVGEYKKAVADCSKVLEQ---D--DTN--VSVLVQRALLYESMEK-YKLGAEDLRTVLKIDPSN 488 (503)
Q Consensus 422 ~aysNrAlcylrLGdyeeALedaekALkL---d--Pd~--~kAlyrlA~Ay~~LGd-yeeAle~LqkALkLDPen 488 (503)
--+..+|.|+..+|+-+.|...++.+++. . ..| +-|+|.+|..|..++. .++|.+++++|-.-.-+.
T Consensus 450 lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 450 LKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 34567899999999999999999988832 1 112 6799999999999999 999999999998876443
No 365
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=78.92 E-value=16 Score=43.22 Aligned_cols=90 Identities=14% Similarity=0.122 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----C-
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT----N- 454 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd----~- 454 (503)
.++..-..+.++..+++.++|+++.+.+++..+... .-....+++..+.+..-+|+|++|+.+.+.+.++... .
T Consensus 457 ~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~-~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l 535 (894)
T COG2909 457 LAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA-YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHL 535 (894)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc-chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHH
Confidence 445555678889999999999999999999876543 2345778899999999999999999999998887422 2
Q ss_pred -HHHHHHHHHHHHHcCC
Q 010717 455 -VSVLVQRALLYESMEK 470 (503)
Q Consensus 455 -~kAlyrlA~Ay~~LGd 470 (503)
.-+.+.++.++...|+
T Consensus 536 ~~~~~~~~s~il~~qGq 552 (894)
T COG2909 536 ALWSLLQQSEILEAQGQ 552 (894)
T ss_pred HHHHHHHHHHHHHHhhH
Confidence 2345566888888884
No 366
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=78.73 E-value=1.2 Score=47.45 Aligned_cols=84 Identities=13% Similarity=0.058 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQ 460 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyr 460 (503)
.....+.+.+.++.++|..|+..-..+++. +.....+|+.++..|+.+.++++|+++++.+....|++....-.
T Consensus 275 ~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~------~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~ 348 (372)
T KOG0546|consen 275 FSIRRNLAAVGLKVKGRGGARFRTNEALRD------ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEE 348 (372)
T ss_pred cccccchHHhcccccCCCcceecccccccc------ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHH
Confidence 345566778888899999999888888864 55667899999999999999999999999999999988765555
Q ss_pred HHHHHHHcCC
Q 010717 461 RALLYESMEK 470 (503)
Q Consensus 461 lA~Ay~~LGd 470 (503)
+..+-....+
T Consensus 349 ~~~~~~~~~~ 358 (372)
T KOG0546|consen 349 LENVRQKKKQ 358 (372)
T ss_pred HHHhhhHHHH
Confidence 5444444333
No 367
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=78.51 E-value=25 Score=37.70 Aligned_cols=104 Identities=13% Similarity=0.069 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVS--- 456 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~k--- 456 (503)
..+++..++.-|.+.+|-+.|+++|.+..+-.-..+..-+..-....+|..|....=..+-++-++..++..-+|-.
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNR 182 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNR 182 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhh
Confidence 45677888888888888888888877766543333333333333445676666655566666667777776666632
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717 457 VLVQRALLYESMEKYKLGAEDLRTVLK 483 (503)
Q Consensus 457 AlyrlA~Ay~~LGdyeeAle~LqkALk 483 (503)
.-...|.-.+...++++|...|.+.+.
T Consensus 183 lKvY~Gly~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 183 LKVYQGLYCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 333346666777788888887776654
No 368
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=78.40 E-value=9.6 Score=39.53 Aligned_cols=65 Identities=12% Similarity=0.005 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ 450 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL 450 (503)
...++..+...+...++++.+++.+++.+++ +|.+-.+|..+-..|++.|+..+|+..|++.-++
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIEL------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 5667888899999999999999999999988 5666789999999999999999999999987664
No 369
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=78.18 E-value=35 Score=33.62 Aligned_cols=96 Identities=10% Similarity=0.114 Sum_probs=72.5
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHH
Q 010717 387 KGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ--------DDTNVSVL 458 (503)
Q Consensus 387 lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL--------dPd~~kAl 458 (503)
+-..-.+.+.|.+|.+++.+.++.-+ ..+..+.|..++.|.+-..+-.--+++=++.++. .|-|..|-
T Consensus 99 qva~kis~~~~~eaK~LlnkIi~nk~----YSeistsYaRi~wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWatAt 174 (220)
T PF10858_consen 99 QVAIKISEKKYSEAKQLLNKIIENKE----YSEISTSYARINWCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWATAT 174 (220)
T ss_pred HHHHHHhhcchhHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHheecccccChhhHHHHHHHHhhccCCCCchHHHHH
Confidence 33444678999999999999997622 3457788999999998876644444444444432 27788888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717 459 VQRALLYESMEKYKLGAEDLRTVLKIDP 486 (503)
Q Consensus 459 yrlA~Ay~~LGdyeeAle~LqkALkLDP 486 (503)
...+.--...+...+|+..++.++.-.-
T Consensus 175 I~kaiwdik~nm~~~aeknL~~l~~Snn 202 (220)
T PF10858_consen 175 IIKAIWDIKNNMKNQAEKNLKNLLASNN 202 (220)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhhcc
Confidence 8889888999999999999998887654
No 370
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=78.17 E-value=3.3 Score=46.17 Aligned_cols=99 Identities=15% Similarity=0.200 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 010717 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRA 462 (503)
Q Consensus 383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA 462 (503)
.....+.+....|+|+.|+..+..+-.++-.. ..+...+-.....+++.++|+..++..|.-.-+.++.+...+
T Consensus 325 ~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~------~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa 398 (831)
T PRK15180 325 LIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT------DSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAA 398 (831)
T ss_pred hhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC------chHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeec
Confidence 34456677778888888888776665543221 112222334456788888888888877766666677666667
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC
Q 010717 463 LLYESMEKYKLGAEDLRTVLKIDPS 487 (503)
Q Consensus 463 ~Ay~~LGdyeeAle~LqkALkLDPe 487 (503)
..-..++-+++++..+++++.+.|+
T Consensus 399 ~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 399 GSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred ccHHHHhHHHHHHHHHHHHhccCCh
Confidence 7777888899999999999999875
No 371
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=78.04 E-value=14 Score=43.33 Aligned_cols=95 Identities=12% Similarity=0.143 Sum_probs=55.2
Q ss_pred HHHHHHHHhCCHHHHHHHHH------HHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHc---
Q 010717 386 NKGVDNQKAGQYADAIKWLS------WAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKV------LEQ--- 450 (503)
Q Consensus 386 ~lGn~~fkqGDY~eAIk~Ye------KALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekA------LkL--- 450 (503)
..|+.+.+..+++.|+++|+ +||+|..-.- ...-..+-...+.-+.+.|+++.|+..|-++ ++.
T Consensus 666 kagdlfeki~d~dkale~fkkgdaf~kaielarfaf-p~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~ 744 (1636)
T KOG3616|consen 666 KAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF-PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIG 744 (1636)
T ss_pred hhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC-cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhh
Confidence 34667777778888888765 4565532210 1112223334566666777788777766432 211
Q ss_pred CCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHH
Q 010717 451 DDTNVSVLVQ----------------RALLYESMEKYKLGAEDLRTV 481 (503)
Q Consensus 451 dPd~~kAlyr----------------lA~Ay~~LGdyeeAle~LqkA 481 (503)
...|.++.+. .+.-|..+++|+-|.+.|.++
T Consensus 745 akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred hhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc
Confidence 1345444332 366677888888888877653
No 372
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=77.67 E-value=30 Score=31.32 Aligned_cols=82 Identities=9% Similarity=0.047 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHHHHHHh---cCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcC
Q 010717 395 GQYADAIKWLSWAVILLEK---SGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ--DDTNVSVLVQRALLYESME 469 (503)
Q Consensus 395 GDY~eAIk~YeKALeL~pk---~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL--dPd~~kAlyrlA~Ay~~LG 469 (503)
+.-..-...+++++..+.. ..+++....+|...+.+. .++.+.|+..... .-..+..|..-|..+...+
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~------~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~ 113 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS------SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRG 113 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB------SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc------cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcC
Confidence 4445556677777776643 334555566666555433 2777778776654 4677888888899999999
Q ss_pred CHHHHHHHHHHHH
Q 010717 470 KYKLGAEDLRTVL 482 (503)
Q Consensus 470 dyeeAle~LqkAL 482 (503)
++++|.+.|++++
T Consensus 114 ~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 114 NFKKADEIYQLGI 126 (126)
T ss_dssp -HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhC
Confidence 9999999999875
No 373
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=77.39 E-value=20 Score=40.37 Aligned_cols=99 Identities=16% Similarity=0.113 Sum_probs=72.2
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 010717 387 KGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYE 466 (503)
Q Consensus 387 lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~ 466 (503)
--......||...|......++.- .+.+......++.+..++|+||.+++++.-+-.+--.-.++...+-..+.
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~------~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~ 368 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRN------QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLH 368 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHh------CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhh
Confidence 334557789999999888888865 23334455667899999999999999987666555555666666777788
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHH
Q 010717 467 SMEKYKLGAEDLRTVLKIDPSNRIA 491 (503)
Q Consensus 467 ~LGdyeeAle~LqkALkLDPen~eA 491 (503)
.++++++|+..-.-.|.-.=+++|+
T Consensus 369 ~l~r~~~a~s~a~~~l~~eie~~ei 393 (831)
T PRK15180 369 GLARWREALSTAEMMLSNEIEDEEV 393 (831)
T ss_pred chhhHHHHHHHHHHHhccccCChhh
Confidence 9999999988877666544444443
No 374
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=77.36 E-value=10 Score=31.91 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEK 413 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk 413 (503)
.+..+...|...-..|+|++|+.+|.+||+++-.
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 4556777788888899999999999999998654
No 375
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=76.57 E-value=7.8 Score=36.20 Aligned_cols=46 Identities=17% Similarity=0.146 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH
Q 010717 382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKE 433 (503)
Q Consensus 382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylr 433 (503)
+.+...+..++..|+|.-|+++...++.. +|++..+...++.++.+
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~a------dp~n~~ar~l~A~al~~ 116 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFA------DPDNEEARQLKADALEQ 116 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-------TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHH
Confidence 34445555555555555555555555554 33334444444444433
No 376
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=76.34 E-value=59 Score=33.37 Aligned_cols=59 Identities=8% Similarity=0.047 Sum_probs=41.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717 430 CYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488 (503)
Q Consensus 430 cylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen 488 (503)
-+++.+...+||..++.-++-.|.+......+=+.|+-.|+|++|...++-+-++.|+.
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 34566667777777777777777776666666677777777777777777777777765
No 377
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=76.29 E-value=17 Score=29.56 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEK 413 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk 413 (503)
.+..+...|..+-..|+|++|+.+|.+|++.+-.
T Consensus 7 ~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 7 KAKELISKALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3556677788888899999999999999987554
No 378
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=76.23 E-value=3.2 Score=27.35 Aligned_cols=23 Identities=13% Similarity=-0.064 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 010717 423 VLSTRASCYKEVGEYKKAVADCS 445 (503)
Q Consensus 423 aysNrAlcylrLGdyeeALedae 445 (503)
++.+++.++..+|++++|+..++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45667777777777777776664
No 379
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=75.81 E-value=12 Score=31.58 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 010717 437 YKKAVADCSKVLEQDDTNVSVLVQRALLYESMEK 470 (503)
Q Consensus 437 yeeALedaekALkLdPd~~kAlyrlA~Ay~~LGd 470 (503)
|.+|++.+.+++++.|+.......+..+...+.+
T Consensus 29 Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~R 62 (75)
T cd02682 29 YKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRR 62 (75)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 4556666666666778887766655555544433
No 380
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=75.55 E-value=8 Score=27.99 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=13.1
Q ss_pred HHHHHHHHHcCCHHHHHHH--HHHHHHcCC
Q 010717 425 STRASCYKEVGEYKKAVAD--CSKVLEQDD 452 (503)
Q Consensus 425 sNrAlcylrLGdyeeALed--aekALkLdP 452 (503)
..+|.++...|+|++|+.. ++-+..+++
T Consensus 5 y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 3345555555555555555 224444443
No 381
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=75.54 E-value=17 Score=29.96 Aligned_cols=34 Identities=18% Similarity=0.381 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEK 413 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk 413 (503)
.+..+...|...-..|+|++|+.+|.+|++++-.
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3556777888889999999999999999987543
No 382
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=75.25 E-value=6.6 Score=47.84 Aligned_cols=106 Identities=14% Similarity=0.131 Sum_probs=84.8
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----
Q 010717 379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEK--SGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD----- 451 (503)
Q Consensus 379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk--~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd----- 451 (503)
..+......|.....++.+.+|.+ ..+++.+..+ ....+..+..|..++.++.+++++++|+..++++.-+.
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g 1008 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLG 1008 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhcc
Confidence 356667788888899999999998 6666665442 11256778899999999999999999999998876442
Q ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 010717 452 ---DTNVSVLVQRALLYESMEKYKLGAEDLRTVLKID 485 (503)
Q Consensus 452 ---Pd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLD 485 (503)
|+....+-+++...+..++...|+..+.+++++.
T Consensus 1009 ~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~ 1045 (1236)
T KOG1839|consen 1009 KDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLK 1045 (1236)
T ss_pred CCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhh
Confidence 5567788899999999999999999999888763
No 383
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=75.10 E-value=20 Score=29.21 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEK 413 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk 413 (503)
+..+...|..+-..++|++|+.+|.+|++++-.
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 445666778888889999999999999987543
No 384
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=75.05 E-value=70 Score=36.49 Aligned_cols=110 Identities=11% Similarity=-0.045 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHH
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD-DTNVSVLV 459 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd-Pd~~kAly 459 (503)
...|......-.+.|++....-.|++++.-+ ....++|.+.+.-....|+.+-|-..+.++.++. +..+..++
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~c------A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L 370 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPC------ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHL 370 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHH------hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHH
Confidence 4455666666778899999999999998653 2456788888888878888888877777777665 66677777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIH 496 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La 496 (503)
..+..-...+++..|...|++...-.|...++.....
T Consensus 371 ~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~ 407 (577)
T KOG1258|consen 371 LEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKI 407 (577)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHH
Confidence 7888888889999999999999988888766644433
No 385
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=74.68 E-value=37 Score=38.62 Aligned_cols=49 Identities=6% Similarity=0.057 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHh
Q 010717 452 DTNVSVLVQRALLYESMEKYKLGAEDLRTVLKID------PSNRIARSTIHRLTK 500 (503)
Q Consensus 452 Pd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLD------Pen~eAk~~La~Lqk 500 (503)
-.+...|..+|..|++.++|.+|+..|-++-+.- .++.|+.+++.++..
T Consensus 315 n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEfleIAn 369 (618)
T PF05053_consen 315 NHHVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSREDEEIYKEFLEIAN 369 (618)
T ss_dssp T--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGGHHHHHHHHHHHH
T ss_pred CCccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccHHHHHHHHHHHHH
Confidence 3456788889999999999999999998876643 356777777766543
No 386
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=74.35 E-value=27 Score=38.41 Aligned_cols=72 Identities=13% Similarity=-0.006 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT 453 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd 453 (503)
.+.....+-..|...+.|+.|.++-.++.- |........+..++-+|.+..-+.+|..|.+++-+|+...|.
T Consensus 208 qavLiN~LLr~yL~n~lydqa~~lvsK~~~--pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 208 QAVLINLLLRNYLHNKLYDQADKLVSKSVY--PEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhcccC--ccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 444455556667777777777777666651 122222344666666777777777777777777777776664
No 387
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=73.97 E-value=48 Score=35.94 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=18.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLKIDP 486 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALkLDP 486 (503)
+++.|-+++|+..+|++.++...+-.|
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 457777777777777777777666555
No 388
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.92 E-value=32 Score=38.81 Aligned_cols=86 Identities=21% Similarity=0.078 Sum_probs=64.5
Q ss_pred CCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-hcCCChhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCC
Q 010717 376 PAGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLE-KSGDMATMMEVLSTRASCYKEVGE-YKKAVADCSKVLEQDDT 453 (503)
Q Consensus 376 ~~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~p-k~~ddpd~A~aysNrAlcylrLGd-yeeALedaekALkLdPd 453 (503)
+.++..-.+..+|.++...|+-..|.++|..+++-.. +..+....+.+++.||..|..++. ..+|.+++.+|.....+
T Consensus 444 d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 3344455567789999999999999999999985422 233344556789999999999999 99999999999988643
Q ss_pred C---HHHHHHH
Q 010717 454 N---VSVLVQR 461 (503)
Q Consensus 454 ~---~kAlyrl 461 (503)
+ .+.++++
T Consensus 524 Y~lenRLh~rI 534 (546)
T KOG3783|consen 524 YELENRLHMRI 534 (546)
T ss_pred cchhhHHHHHH
Confidence 3 3344444
No 389
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=73.75 E-value=14 Score=36.97 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 010717 397 YADAIKWLSWAVILLEK--SGDMATMMEVLSTRASCYKE-VGEYKKAVADCSKVLE 449 (503)
Q Consensus 397 Y~eAIk~YeKALeL~pk--~~ddpd~A~aysNrAlcylr-LGdyeeALedaekALk 449 (503)
.+.|.+.|++|+++..+ .+-+|....+..|.+..|+. +++.++|++.+++++.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 36788889999988877 34467777777888877765 8888999988888764
No 390
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=73.50 E-value=12 Score=43.61 Aligned_cols=69 Identities=9% Similarity=0.057 Sum_probs=44.1
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010717 417 MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIH 496 (503)
Q Consensus 417 dpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La 496 (503)
+.....++.++|..+..+.+.++|.++|.++-.+. ++..||+.+.+|++-. .....-|++-+....++
T Consensus 792 D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e--------~~~ecly~le~f~~LE----~la~~Lpe~s~llp~~a 859 (1189)
T KOG2041|consen 792 DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTE--------NQIECLYRLELFGELE----VLARTLPEDSELLPVMA 859 (1189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH--------hHHHHHHHHHhhhhHH----HHHHhcCcccchHHHHH
Confidence 44566788889999999999999999998876432 4456666666665432 22233355544444444
Q ss_pred H
Q 010717 497 R 497 (503)
Q Consensus 497 ~ 497 (503)
+
T Consensus 860 ~ 860 (1189)
T KOG2041|consen 860 D 860 (1189)
T ss_pred H
Confidence 3
No 391
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=73.08 E-value=16 Score=36.50 Aligned_cols=95 Identities=15% Similarity=0.068 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHHh-----C--CHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH-------------------
Q 010717 380 TGAAAKNKGVDNQKA-----G--QYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKE------------------- 433 (503)
Q Consensus 380 ~A~alk~lGn~~fkq-----G--DY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylr------------------- 433 (503)
..++....|..+... . +...|+++|++|.++ .+.+++++|+..|+.
T Consensus 104 ~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl--------~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~ 175 (248)
T KOG4014|consen 104 IPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL--------EDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRA 175 (248)
T ss_pred CHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC--------CCchHHHHHHHHHhccchhhcccCCCCCCCcchh
Confidence 445555666555432 2 367788888888866 234555555555543
Q ss_pred -----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHh
Q 010717 434 -----VGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESM----EKYKLGAEDLRTVLKI 484 (503)
Q Consensus 434 -----LGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~L----GdyeeAle~LqkALkL 484 (503)
+++.++|+++..+|.+++ ++.++-+....|..- ++.++|..+-.+++++
T Consensus 176 ~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 176 ELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred hhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 367788888888888886 567777777777653 3556666666655544
No 392
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=72.98 E-value=1.1 Score=49.83 Aligned_cols=106 Identities=13% Similarity=-0.011 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHcCC-CC
Q 010717 378 GVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKV--LEQDD-TN 454 (503)
Q Consensus 378 ~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekA--LkLdP-d~ 454 (503)
......+...+..++..+++..|...+.+.... . -............+.+.+..+++++|++.+... ..+.+ ..
T Consensus 21 ~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~--~-L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~ 97 (536)
T PF04348_consen 21 EQRAQLLLLAARALLQEGDWAQAQALLNQLDPQ--Q-LSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQ 97 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccc--c-CChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHH
Confidence 335566667788999999999999998876521 0 012234556677899999999999999999741 12222 22
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717 455 VSVLVQRALLYESMEKYKLGAEDLRTVLKIDP 486 (503)
Q Consensus 455 ~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP 486 (503)
...|..++.+|...+++-+|.+.+-++-.+-+
T Consensus 98 ~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~lL~ 129 (536)
T PF04348_consen 98 ARYHQLRAQAYEQQGDPLAAARERIALDPLLP 129 (536)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcC
Confidence 34455569999999999988887666555544
No 393
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=72.70 E-value=12 Score=41.13 Aligned_cols=46 Identities=11% Similarity=-0.023 Sum_probs=32.0
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010717 432 KEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVL 482 (503)
Q Consensus 432 lrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkAL 482 (503)
+++|+++.|++.++ .-++...|-++|.+.+..|+++-|.++|+++-
T Consensus 329 l~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 329 LQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 44444444444331 23467789999999999999999999998853
No 394
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=72.40 E-value=48 Score=34.42 Aligned_cols=82 Identities=9% Similarity=-0.049 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH---HcCCHHH
Q 010717 397 YADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYE---SMEKYKL 473 (503)
Q Consensus 397 Y~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~---~LGdyee 473 (503)
.+..+.+|++||+. .|....++..+-.+..+.-+-++..+-+++++..+|.....|...-.... ..-.+++
T Consensus 47 ~E~klsilerAL~~------np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~ 120 (321)
T PF08424_consen 47 AERKLSILERALKH------NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSD 120 (321)
T ss_pred HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHH
Confidence 45567789999987 45666777777777788889999999999999999998887665432222 2334666
Q ss_pred HHHHHHHHHHh
Q 010717 474 GAEDLRTVLKI 484 (503)
Q Consensus 474 Ale~LqkALkL 484 (503)
.+..|.++|+.
T Consensus 121 ~~~~y~~~l~~ 131 (321)
T PF08424_consen 121 VRDVYEKCLRA 131 (321)
T ss_pred HHHHHHHHHHH
Confidence 66666666553
No 395
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=72.25 E-value=47 Score=33.65 Aligned_cols=98 Identities=11% Similarity=-0.062 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHcC------CC
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYK-KAVADCSKVLEQD------DT 453 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdye-eALedaekALkLd------Pd 453 (503)
.+.++.=+..+++.+++.-|.++-...|+...+..... +.+...++..++.....-+ +-.+..++||+-- -.
T Consensus 10 idLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~-~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~G 88 (260)
T PF04190_consen 10 IDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPV-DEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFG 88 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT----SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT-
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCC
Confidence 44556667888888898888888777777766544322 3334456666666554322 3344444444322 24
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010717 454 NVSVLVQRALLYESMEKYKLGAEDLR 479 (503)
Q Consensus 454 ~~kAlyrlA~Ay~~LGdyeeAle~Lq 479 (503)
+++.|..+|..|.+.++|.+|..+|-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 67899999999999999999988874
No 396
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=72.00 E-value=19 Score=39.79 Aligned_cols=117 Identities=15% Similarity=0.228 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH--------------------HHcCCHHHH
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCY--------------------KEVGEYKKA 440 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcy--------------------lrLGdyeeA 440 (503)
...++..|...+...++.+++.++++||...-...+ .++. .+..|- ..-|.+-+-
T Consensus 31 ~~~ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~----~~~~-Cr~~C~g~~~~~e~~~~~~s~~~~~~a~fg~~le~ 105 (471)
T KOG4459|consen 31 HELAYSHGLESYEEENWPEAVRFLERALRLFRALRD----SEAF-CRTNCEGPAQLPEPEAGSASFGGLYLAIFGHLLER 105 (471)
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhh----hHHH-HHhhccCcccCCCchhcccccchhHHHHHHHHHHH
Confidence 456788999999999999999999999976332111 0111 122222 111222222
Q ss_pred HHHHHHHHHc---CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhhh
Q 010717 441 VADCSKVLEQ---DDTN----------VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTKMV 502 (503)
Q Consensus 441 LedaekALkL---dPd~----------~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~LqklL 502 (503)
...+++|..- ++.. -..|-.+-.+|++.+++.+|++.-...|--+|++..+++.+..-+.++
T Consensus 106 a~Cl~rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l 180 (471)
T KOG4459|consen 106 AACLRRCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTML 180 (471)
T ss_pred HHHHHHHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhcc
Confidence 2223333321 1211 135667789999999999999999999999999999999998777554
No 397
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.06 E-value=25 Score=42.67 Aligned_cols=103 Identities=19% Similarity=0.106 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH----
Q 010717 382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSV---- 457 (503)
Q Consensus 382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kA---- 457 (503)
..+...|+.+|..+.|+.|.-+|... .-|..++..+..+|+|..|+..+++|-... .|-++
T Consensus 1195 A~i~~vGdrcf~~~~y~aAkl~y~~v--------------SN~a~La~TLV~LgeyQ~AVD~aRKAns~k-tWK~VcfaC 1259 (1666)
T KOG0985|consen 1195 ANIQQVGDRCFEEKMYEAAKLLYSNV--------------SNFAKLASTLVYLGEYQGAVDAARKANSTK-TWKEVCFAC 1259 (1666)
T ss_pred hhHHHHhHHHhhhhhhHHHHHHHHHh--------------hhHHHHHHHHHHHHHHHHHHHHhhhccchh-HHHHHHHHH
Confidence 34667899999999999888887543 457778899999999999999988765432 12221
Q ss_pred ----------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010717 458 ----------------------LVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLT 499 (503)
Q Consensus 458 ----------------------lyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lq 499 (503)
+-.+-..|...|-+++-+..++.+|-|...+.-+..+|+.+.
T Consensus 1260 vd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLY 1323 (1666)
T KOG0985|consen 1260 VDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILY 1323 (1666)
T ss_pred hchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Confidence 222445567788888888888888888777766666665554
No 398
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=70.43 E-value=70 Score=35.12 Aligned_cols=81 Identities=14% Similarity=0.062 Sum_probs=58.5
Q ss_pred ChhhHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHH
Q 010717 417 MATMMEVLSTRASCYKEVG------------EYKKAVADCSKVLEQDDTNVSVLVQRALLYESME--KYKLGAEDLRTVL 482 (503)
Q Consensus 417 dpd~A~aysNrAlcylrLG------------dyeeALedaekALkLdPd~~kAlyrlA~Ay~~LG--dyeeAle~LqkAL 482 (503)
.|+...+|+-|=.|+.+.. -.++-+.+...||+.+|+.--+|+.+.-++.... ++..-++.++++|
T Consensus 59 npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L 138 (421)
T KOG0529|consen 59 NPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKAL 138 (421)
T ss_pred CchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 4556667665555543322 3455677778899999999999999999988765 4688899999999
Q ss_pred HhCCCCHHHHHHHHH
Q 010717 483 KIDPSNRIARSTIHR 497 (503)
Q Consensus 483 kLDPen~eAk~~La~ 497 (503)
++||.|-.+...-+.
T Consensus 139 ~~D~RNfh~W~YRRf 153 (421)
T KOG0529|consen 139 KQDPRNFHAWHYRRF 153 (421)
T ss_pred hcCcccccchHHHHH
Confidence 999988655444333
No 399
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=69.28 E-value=16 Score=38.15 Aligned_cols=80 Identities=19% Similarity=0.212 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-c-----CCHHHHHHHHHHHHHhCCCCHHHHHH
Q 010717 421 MEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYES-M-----EKYKLGAEDLRTVLKIDPSNRIARST 494 (503)
Q Consensus 421 A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~-L-----GdyeeAle~LqkALkLDPen~eAk~~ 494 (503)
..+|.-|--|....+.|++-+.++.+.|+.|-.+-.||..+=.+... . -..+.-+.+..+.+++.|.|..+...
T Consensus 147 YHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnY 226 (318)
T KOG0530|consen 147 YHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNY 226 (318)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHH
Confidence 34555555555555555555555555555554443343332111111 0 11223344444555555555555555
Q ss_pred HHHHHh
Q 010717 495 IHRLTK 500 (503)
Q Consensus 495 La~Lqk 500 (503)
|.-+++
T Consensus 227 L~G~l~ 232 (318)
T KOG0530|consen 227 LKGLLE 232 (318)
T ss_pred HHHHHH
Confidence 544433
No 400
>PRK12798 chemotaxis protein; Reviewed
Probab=69.21 E-value=70 Score=35.21 Aligned_cols=112 Identities=9% Similarity=-0.062 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCCH--H
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTR-ASCYKEVGEYKKAVADCSKVLEQDDTNV--S 456 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNr-AlcylrLGdyeeALedaekALkLdPd~~--k 456 (503)
..+.-...|...|-.|+-.+|.+.+...... . .+...-.|..+ .-..+...+..+|++.|+.+.-+.|... +
T Consensus 111 ~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~---~--l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEE 185 (421)
T PRK12798 111 NFDQRLADGALAYLSGRGREARKLLAGVAPE---Y--LPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEE 185 (421)
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHhhcCChh---h--cCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHH
Confidence 4555666788889999999999888665322 1 11122223322 2334457789999999999999999774 3
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010717 457 -VLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIH 496 (503)
Q Consensus 457 -AlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La 496 (503)
++.+.-.+....|+.+++..+-+.+++.....+.+-+...
T Consensus 186 AALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~ 226 (421)
T PRK12798 186 AALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQ 226 (421)
T ss_pred HHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHH
Confidence 4444456668889999999988888888877665544433
No 401
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.80 E-value=55 Score=37.50 Aligned_cols=104 Identities=16% Similarity=0.142 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHHHHHHhc------CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cC------------
Q 010717 395 GQYADAIKWLSWAVILLEKS------GDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLE-----QD------------ 451 (503)
Q Consensus 395 GDY~eAIk~YeKALeL~pk~------~ddpd~A~aysNrAlcylrLGdyeeALedaekALk-----Ld------------ 451 (503)
.-|++|...|..|++..+-. -..|.....+..++.++..+|+.+-|....++||= +.
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 34666666666666543211 11355666677778888788887777777666651 11
Q ss_pred ----CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Q 010717 452 ----DTNV---SVLVQRALLYESMEKYKLGAEDLRTVLKIDPS-NRIARSTIHRL 498 (503)
Q Consensus 452 ----Pd~~---kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPe-n~eAk~~La~L 498 (503)
|.+- .++|+.=.-+...|-+.-|.+++.-+|+++|. ++.....+..+
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~ 386 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDI 386 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHH
Confidence 2221 24444455566677788888888888888886 65554444433
No 402
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=68.61 E-value=69 Score=33.30 Aligned_cols=114 Identities=9% Similarity=0.007 Sum_probs=72.0
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHH----HHHHHHHHHHHcCCCCHHHHHHHH
Q 010717 387 KGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYK----KAVADCSKVLEQDDTNVSVLVQRA 462 (503)
Q Consensus 387 lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdye----eALedaekALkLdPd~~kAlyrlA 462 (503)
.-..+++.++|++-.++|.++...-.+...... ...+.....+.+.+.... +-++.++.-++..|+..-+++.+|
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~-~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g 84 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQ-RYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMG 84 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccc-hHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHH
Confidence 445678899999998998888754332111111 111111111122222211 356666777788999988888877
Q ss_pred HHHHHcC----------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 010717 463 LLYESME----------------------KYKLGAEDLRTVLKIDPSNRIARSTIHRLTKM 501 (503)
Q Consensus 463 ~Ay~~LG----------------------dyeeAle~LqkALkLDPen~eAk~~La~Lqkl 501 (503)
..+.... -.+.|..+|.+++.++|....+...+.++...
T Consensus 85 ~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~ 145 (277)
T PF13226_consen 85 MYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAY 145 (277)
T ss_pred HHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhh
Confidence 7665422 26778999999999999998887777766543
No 403
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.60 E-value=42 Score=36.00 Aligned_cols=104 Identities=15% Similarity=0.089 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILL--EKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ--DDTNV 455 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~--pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL--dPd~~ 455 (503)
-+.+...++.+|.+.++|..|...+.- |.+. ++.-+.......+..++..|++.++-.+|..+..++--+ +..+.
T Consensus 102 v~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne 180 (399)
T KOG1497|consen 102 VASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNE 180 (399)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCH
Confidence 344566789999999999999876632 2221 111122345567888999999999999999999886432 33443
Q ss_pred HHHHH----HHHHHHHcCCHHHHHHHHHHHHHh
Q 010717 456 SVLVQ----RALLYESMEKYKLGAEDLRTVLKI 484 (503)
Q Consensus 456 kAlyr----lA~Ay~~LGdyeeAle~LqkALkL 484 (503)
..... .|.++-..++|=+|...|.++.+.
T Consensus 181 ~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~ 213 (399)
T KOG1497|consen 181 QLQIEYKVCYARVLDYKRKFLEAAQRYYELSQR 213 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222 355566667777777777766554
No 404
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=67.92 E-value=67 Score=34.65 Aligned_cols=94 Identities=13% Similarity=0.149 Sum_probs=62.7
Q ss_pred HHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-C-----CCCHH-HHHHH-HH
Q 010717 392 QKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ-D-----DTNVS-VLVQR-AL 463 (503)
Q Consensus 392 fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL-d-----Pd~~k-Alyrl-A~ 463 (503)
....|.++|++++++.++.............+...++.|++..++.+++.+.+...-.. | |.+.. .+|.+ ..
T Consensus 86 ~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssq 165 (380)
T KOG2908|consen 86 EQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQ 165 (380)
T ss_pred HHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHH
Confidence 34568999999999999876554322233445678999999999999998877766541 1 22222 34445 44
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC
Q 010717 464 LYESMEKYKLGAEDLRTVLKID 485 (503)
Q Consensus 464 Ay~~LGdyeeAle~LqkALkLD 485 (503)
.|...+++.....+..+.|..-
T Consensus 166 Yyk~~~d~a~yYr~~L~YL~~~ 187 (380)
T KOG2908|consen 166 YYKKIGDFASYYRHALLYLGCS 187 (380)
T ss_pred HHHHHHhHHHHHHHHHHHhccc
Confidence 5555678877777766666543
No 405
>PRK09687 putative lyase; Provisional
Probab=66.21 E-value=63 Score=33.10 Aligned_cols=90 Identities=16% Similarity=0.004 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010717 397 YADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAE 476 (503)
Q Consensus 397 Y~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle 476 (503)
..+++..+.+++. + .+..+...-...+-+.++ .+|+..+-++++... ..+..+.++-.+|. ++|+.
T Consensus 190 ~~~~~~~L~~~L~----D----~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~----~~~~a~~ALg~ig~-~~a~p 255 (280)
T PRK09687 190 NPDIREAFVAMLQ----D----KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT----VGDLIIEAAGELGD-KTLLP 255 (280)
T ss_pred CHHHHHHHHHHhc----C----CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc----hHHHHHHHHHhcCC-HhHHH
Confidence 3455555555551 1 122344433444445555 678888888876432 45667788888888 47999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHh
Q 010717 477 DLRTVLKIDPSNRIARSTIHRLTK 500 (503)
Q Consensus 477 ~LqkALkLDPen~eAk~~La~Lqk 500 (503)
.++++++.+|+.....+.+..|++
T Consensus 256 ~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 256 VLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHHhhCCChhHHHHHHHHHhc
Confidence 999999988866666666655543
No 406
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=65.83 E-value=9.7 Score=30.98 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=13.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 010717 428 ASCYKEVGEYKKAVADCSKVLE 449 (503)
Q Consensus 428 AlcylrLGdyeeALedaekALk 449 (503)
|..+-+.|++++|+..|.++++
T Consensus 15 Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 15 ALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3344446677777777766654
No 407
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=65.55 E-value=73 Score=35.00 Aligned_cols=95 Identities=19% Similarity=0.196 Sum_probs=70.7
Q ss_pred HHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 010717 392 QKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGE--YKKAVADCSKVLEQDDTNVSVLVQRALLYESME 469 (503)
Q Consensus 392 fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGd--yeeALedaekALkLdPd~~kAlyrlA~Ay~~LG 469 (503)
.++.-+++-+++...+|+. .|....+|+.|..++.+... +..-++.|+++|++||.+-.+|..+-.+.....
T Consensus 86 ek~~~ld~eL~~~~~~L~~------npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~ 159 (421)
T KOG0529|consen 86 EKQALLDEELKYVESALKV------NPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAE 159 (421)
T ss_pred HHHHhhHHHHHHHHHHHHh------CchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHh
Confidence 3444566677777788877 56778899999999987765 588899999999999999887766654444433
Q ss_pred C----HHHHHHHHHHHHHhCCCCHHHH
Q 010717 470 K----YKLGAEDLRTVLKIDPSNRIAR 492 (503)
Q Consensus 470 d----yeeAle~LqkALkLDPen~eAk 492 (503)
. ..+-++...+++.-++.|--+.
T Consensus 160 ~~~~~~~~El~ftt~~I~~nfSNYsaW 186 (421)
T KOG0529|consen 160 RSRNLEKEELEFTTKLINDNFSNYSAW 186 (421)
T ss_pred cccccchhHHHHHHHHHhccchhhhHH
Confidence 2 5667888888888777765443
No 408
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=65.04 E-value=70 Score=26.75 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLE 412 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~p 412 (503)
.+..+..++...-+.++|++|+.+|.++|+++-
T Consensus 5 ~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~ 37 (75)
T cd02677 5 QAAELIRLALEKEEEGDYEAAFEFYRAGVDLLL 37 (75)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 355666777888888999999999999988654
No 409
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=64.86 E-value=96 Score=31.45 Aligned_cols=84 Identities=15% Similarity=0.085 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH------H----------HHcCCCCHHHHHHHHHH
Q 010717 401 IKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSK------V----------LEQDDTNVSVLVQRALL 464 (503)
Q Consensus 401 Ik~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaek------A----------LkLdPd~~kAlyrlA~A 464 (503)
.++.++||+........-.+..++..+|..|++.++|.+|..++-. + .+-.+.....++.++..
T Consensus 70 ~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL 149 (260)
T PF04190_consen 70 KKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVL 149 (260)
T ss_dssp HHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 3445555555422222334678899999999999999999888721 1 12235556666666554
Q ss_pred -HHHcCCHHHHHHHHHHHHHh
Q 010717 465 -YESMEKYKLGAEDLRTVLKI 484 (503)
Q Consensus 465 -y~~LGdyeeAle~LqkALkL 484 (503)
|..+++...|.+.+...++.
T Consensus 150 ~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 150 QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 66679999999888777766
No 410
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=64.62 E-value=48 Score=35.30 Aligned_cols=87 Identities=10% Similarity=0.107 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHH---HHHHHHHHHHHcCCH
Q 010717 398 ADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT---NVS---VLVQRALLYESMEKY 471 (503)
Q Consensus 398 ~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd---~~k---AlyrlA~Ay~~LGdy 471 (503)
++-|+-+.++|+-.+....+...++++-|+|..|.+.++.+.+.+++.+.++-+-. ... .-.++|.+|-.+.-.
T Consensus 92 eeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV 171 (412)
T COG5187 92 EEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVV 171 (412)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHH
Confidence 44455565555544433334567888999999999999999999998887754311 112 334556666666555
Q ss_pred HHHHHHHHHHHHh
Q 010717 472 KLGAEDLRTVLKI 484 (503)
Q Consensus 472 eeAle~LqkALkL 484 (503)
++-++.....++.
T Consensus 172 ~e~lE~~~~~iEk 184 (412)
T COG5187 172 EESLEVADDIIEK 184 (412)
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555543
No 411
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=64.32 E-value=73 Score=33.99 Aligned_cols=105 Identities=10% Similarity=0.074 Sum_probs=73.8
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH--
Q 010717 379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVS-- 456 (503)
Q Consensus 379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~k-- 456 (503)
...++++++|.-|.+..|.+.+.+++.+.++-.-..+...+-.-.-..+|.+|-.+.=.++-++.++-.++..-+|-.
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrN 192 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRN 192 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhh
Confidence 467899999999999999999999988877653333333332233345677776666678888888888888777743
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717 457 -VLVQRALLYESMEKYKLGAEDLRTVLK 483 (503)
Q Consensus 457 -AlyrlA~Ay~~LGdyeeAle~LqkALk 483 (503)
.-...|.-.+...++.+|...|...|.
T Consensus 193 RyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 193 RYKVYKGIFKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 222346666777788888887776664
No 412
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.10 E-value=37 Score=36.77 Aligned_cols=82 Identities=11% Similarity=0.020 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhcCCChhhHHHHH--HHHHHHHHcCCHHHHHHHHHHHH---HcC-----------------------
Q 010717 400 AIKWLSWAVILLEKSGDMATMMEVLS--TRASCYKEVGEYKKAVADCSKVL---EQD----------------------- 451 (503)
Q Consensus 400 AIk~YeKALeL~pk~~ddpd~A~ays--NrAlcylrLGdyeeALedaekAL---kLd----------------------- 451 (503)
+-+.|+++.+++++.. ..+|. +-|++++..++|.+....+..+- +.+
T Consensus 40 ~~~~y~Q~~q~~kk~~-----~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi 114 (449)
T COG3014 40 PKKAYEQSKQFTKKKK-----NALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNV 114 (449)
T ss_pred chhHHHHHHHhhhhhh-----HHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccch
Confidence 4456777777765432 13332 45777777778777665554332 211
Q ss_pred ----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717 452 ----DTN---VSVLVQRALLYESMEKYKLGAEDLRTVLKIDP 486 (503)
Q Consensus 452 ----Pd~---~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP 486 (503)
|.. .-.++.+|.-|+.+.|++.|+..|+++++...
T Consensus 115 ~~Y~g~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~ 156 (449)
T COG3014 115 RAYGGNIYEGVLINYYKALNYMLLNDSAKARVEFNRANERQR 156 (449)
T ss_pred hhcCchhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHHH
Confidence 111 12566778999999999999999999987654
No 413
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=62.25 E-value=30 Score=38.30 Aligned_cols=63 Identities=17% Similarity=0.204 Sum_probs=43.2
Q ss_pred HHcCCHHHHHHHHHHHHHcC-CCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 010717 432 KEVGEYKKAVADCSKVLEQD-DTNV----------SVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARST 494 (503)
Q Consensus 432 lrLGdyeeALedaekALkLd-Pd~~----------kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~ 494 (503)
...++|..|++.|.+...+. |..+ -..-.+..||..+++.+.|+....+.+-++|....-+..
T Consensus 194 ~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLr 267 (569)
T PF15015_consen 194 VAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLR 267 (569)
T ss_pred HHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHH
Confidence 33455566666666655443 1211 134467999999999999999999999999987544433
No 414
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=61.97 E-value=53 Score=27.35 Aligned_cols=33 Identities=18% Similarity=0.172 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLE 412 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~p 412 (503)
.+..+...|...-..++|++|+.+|.++|+++-
T Consensus 5 ~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~ 37 (75)
T cd02684 5 KAIALVVQAVKKDQRGDAAAALSLYCSALQYFV 37 (75)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 355667778888888999999999999988654
No 415
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=61.92 E-value=67 Score=42.00 Aligned_cols=104 Identities=16% Similarity=0.064 Sum_probs=79.3
Q ss_pred CcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC--
Q 010717 377 AGVTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD-DT-- 453 (503)
Q Consensus 377 ~~~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd-Pd-- 453 (503)
....+.+|.+.+.++.+.|+++.|..+.-+|.+. ....++..+|..+...|+-..|+..+++.+.++ |+
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~--------r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~ 1737 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKES--------RLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLH 1737 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc--------ccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccccc
Confidence 3457889999999999999999999999999876 246899999999999999999999999999664 22
Q ss_pred --------CH------HHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCC
Q 010717 454 --------NV------SVLVQRALLYESMEK--YKLGAEDLRTVLKIDPSN 488 (503)
Q Consensus 454 --------~~------kAlyrlA~Ay~~LGd--yeeAle~LqkALkLDPen 488 (503)
.. ++.+..+.-....++ -++-+..|+++.++.|+.
T Consensus 1738 ~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ew 1788 (2382)
T KOG0890|consen 1738 TPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEW 1788 (2382)
T ss_pred CCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccc
Confidence 11 233333333334444 344578889999999854
No 416
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=61.47 E-value=95 Score=29.29 Aligned_cols=101 Identities=17% Similarity=0.020 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh-------cC--------------------------CChhhHHHHHHHHH
Q 010717 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLEK-------SG--------------------------DMATMMEVLSTRAS 429 (503)
Q Consensus 383 alk~lGn~~fkqGDY~eAIk~YeKALeL~pk-------~~--------------------------ddpd~A~aysNrAl 429 (503)
.....+......|+.++|++.+.+|..++.. .. ............+.
T Consensus 4 ~~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~ 83 (155)
T PF10938_consen 4 RDIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTAN 83 (155)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHH
Confidence 3456778888899999999999999876641 00 01123445667788
Q ss_pred HHHHcCCHHHHHHHHHHHHH-cC------C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717 430 CYKEVGEYKKAVADCSKVLE-QD------D-TNVSVLVQRALLYESMEKYKLGAEDLRTVLK 483 (503)
Q Consensus 430 cylrLGdyeeALedaekALk-Ld------P-d~~kAlyrlA~Ay~~LGdyeeAle~LqkALk 483 (503)
-+++.|+..+|.+.++.+-. ++ | ........++..+...|+|++|...|..++.
T Consensus 84 ~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 84 ELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 89999999999988876431 11 2 2245677889999999999999999998874
No 417
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=59.38 E-value=1.1e+02 Score=33.20 Aligned_cols=109 Identities=14% Similarity=0.140 Sum_probs=61.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHH
Q 010717 385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ-DDTNVSVLVQRAL 463 (503)
Q Consensus 385 k~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL-dPd~~kAlyrlA~ 463 (503)
..++.++.+.|+..+|++.+....+-.+ --....++-|+-..++++.-|.+.-..+-+-=.+ .|..+..+|.-+.
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke~p----l~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaAL 354 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKEFP----LLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAAL 354 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhcc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHH
Confidence 4568888999999999999887664321 1123345667777777665444332222221122 1555555554322
Q ss_pred HHH-------------H--cCC-HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010717 464 LYE-------------S--MEK-YKLGAEDLRTVLKIDPSNRIARSTIHR 497 (503)
Q Consensus 464 Ay~-------------~--LGd-yeeAle~LqkALkLDPen~eAk~~La~ 497 (503)
.-. + +-. -..|++.+.++++.+|.-+....+++.
T Consensus 355 LK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE~ks 404 (556)
T KOG3807|consen 355 LKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEMKS 404 (556)
T ss_pred HHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHHHHh
Confidence 111 0 111 234888999999999876655544443
No 418
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=59.23 E-value=83 Score=36.01 Aligned_cols=66 Identities=17% Similarity=0.088 Sum_probs=53.7
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 010717 417 MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPS 487 (503)
Q Consensus 417 dpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPe 487 (503)
....+......+..|-..++.|+|-+.|++.+..+++ .++|..+.-++..|-..+|.+.++ ++.+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 103 (578)
T PRK15490 38 EALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK---KVSNG 103 (578)
T ss_pred cchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH---HhCcc
Confidence 3345566677888999999999999999999999988 788888899999888888888777 44444
No 419
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.00 E-value=1e+02 Score=30.75 Aligned_cols=77 Identities=13% Similarity=0.083 Sum_probs=56.6
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 010717 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLY 465 (503)
Q Consensus 386 ~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay 465 (503)
..+..+...+-|++-....+..- ....+....+...|++..++.|+|.+|.+.|++... |...++...+++++.
T Consensus 137 raa~lLvD~gsy~dV~srvepLa-----~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~m 210 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLA-----GDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIM 210 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhcc-----CCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHH
Confidence 34566677788877555444321 233567778888899999999999999999998776 666677777888777
Q ss_pred HHc
Q 010717 466 ESM 468 (503)
Q Consensus 466 ~~L 468 (503)
+.+
T Consensus 211 ldl 213 (221)
T COG4649 211 LDL 213 (221)
T ss_pred HHH
Confidence 654
No 420
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=58.97 E-value=9.2 Score=39.93 Aligned_cols=97 Identities=8% Similarity=-0.014 Sum_probs=60.7
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHhcC-----CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHH
Q 010717 391 NQKAGQYADAIKWLSWAVILLEKSG-----DMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN------VSVLV 459 (503)
Q Consensus 391 ~fkqGDY~eAIk~YeKALeL~pk~~-----ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~------~kAly 459 (503)
++..++...|+..|...+.--+++- ........|.....|+ ..-..+.|++.+++||.+...- --+.+
T Consensus 5 L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~-s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~ 83 (368)
T COG5091 5 LYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWH-SDATMENAKELLDKALMTAEGRGDRSKIGLVNF 83 (368)
T ss_pred hhcccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhh-cccChhhHHHHHHHHHHhhhccCCcceeeeehh
Confidence 4445555566666655543311110 0011123344444443 3345688999999999875322 22567
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717 460 QRALLYESMEKYKLGAEDLRTVLKIDPSN 488 (503)
Q Consensus 460 rlA~Ay~~LGdyeeAle~LqkALkLDPen 488 (503)
+++..|+.+++|+.|..+|.+|+++.-++
T Consensus 84 ~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d 112 (368)
T COG5091 84 RYFVHFFNIKDYELAQSYFKKAKNLYVDD 112 (368)
T ss_pred hhHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 88999999999999999999999986544
No 421
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.70 E-value=47 Score=38.02 Aligned_cols=100 Identities=14% Similarity=0.053 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHH
Q 010717 384 AKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD--DTNVSVLVQR 461 (503)
Q Consensus 384 lk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd--Pd~~kAlyrl 461 (503)
++..=.-+.++|-+..|.++++..+.+++.. +| ..+++.+=...++..+|+=-|+.++..-..+ -.++...|-+
T Consensus 345 l~r~m~~l~~RGC~rTA~E~cKlllsLdp~e--DP--l~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~ 420 (665)
T KOG2422|consen 345 LFRYMQSLAQRGCWRTALEWCKLLLSLDPSE--DP--LGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSL 420 (665)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCcC--Cc--hhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHH
Confidence 3334445567899999999999999885431 22 2344445455566777776666666553332 1234455666
Q ss_pred HHHHHHcCC-----HHHHHHHHHHHHHhCCC
Q 010717 462 ALLYESMEK-----YKLGAEDLRTVLKIDPS 487 (503)
Q Consensus 462 A~Ay~~LGd-----yeeAle~LqkALkLDPe 487 (503)
|.|+..+.+ .+.|+..+.+|+++.|.
T Consensus 421 AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 421 ALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 666655543 45699999999999883
No 422
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=58.68 E-value=44 Score=35.01 Aligned_cols=47 Identities=17% Similarity=0.142 Sum_probs=42.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010717 434 VGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRT 480 (503)
Q Consensus 434 LGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~Lqk 480 (503)
....-+|+..++.++..+|.+....+.+..+|..+|-...|.+.|.+
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 44467888899999999999999999999999999999999999864
No 423
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=58.12 E-value=85 Score=26.28 Aligned_cols=58 Identities=21% Similarity=0.071 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 010717 397 YADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESM 468 (503)
Q Consensus 397 Y~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~L 468 (503)
-..|+++..+|++.+.. --+.-|.. -|.+||+.+.++++..|+...--..+..+-..+
T Consensus 3 ~~~a~~l~~~Ave~D~~---------g~y~eAl~-----~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~ 60 (77)
T cd02683 3 ELAAKEVLKRAVELDQE---------GRFQEALV-----CYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYM 60 (77)
T ss_pred hHHHHHHHHHHHHHHHh---------ccHHHHHH-----HHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 35677777777766331 11111111 145666667777777776544333334443333
No 424
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=57.70 E-value=66 Score=30.47 Aligned_cols=57 Identities=14% Similarity=0.078 Sum_probs=42.9
Q ss_pred HHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 010717 392 QKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDD 452 (503)
Q Consensus 392 fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdP 452 (503)
....+-+....+.+.+.++....+ +..++.+++.++..+|+.++|.+..+++..+.|
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P----~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRP----DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344555555555555555544433 467899999999999999999999999999999
No 425
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.53 E-value=1.4e+02 Score=36.73 Aligned_cols=62 Identities=18% Similarity=0.004 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717 420 MMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDP 486 (503)
Q Consensus 420 ~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDP 486 (503)
...+|+.+|.+.++.+...+|++.|- ..+++..|...-.+....+.|++-+.+++-+-+.-.
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyi-----kadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYI-----KADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHH-----hcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence 35789999999999999999999983 346778888888888999999999999887766543
No 426
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=57.29 E-value=2e+02 Score=32.95 Aligned_cols=109 Identities=17% Similarity=0.042 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQ---------- 450 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkL---------- 450 (503)
..+++.++.+|... .-++-...+++.+++ +-++...--.++..| +..+..++..+|.+++..
T Consensus 99 kmal~el~q~y~en-~n~~l~~lWer~ve~------dfnDvv~~ReLa~~y-Ekik~sk~a~~f~Ka~yrfI~~~q~~~i 170 (711)
T COG1747 99 KMALLELLQCYKEN-GNEQLYSLWERLVEY------DFNDVVIGRELADKY-EKIKKSKAAEFFGKALYRFIPRRQNAAI 170 (711)
T ss_pred HHHHHHHHHHHHhc-CchhhHHHHHHHHHh------cchhHHHHHHHHHHH-HHhchhhHHHHHHHHHHHhcchhhhhhH
Confidence 34566666666555 444455555555555 222333334454444 336666677666666532
Q ss_pred ----------CCCCHHHH-------------------HHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010717 451 ----------DDTNVSVL-------------------VQRA-LLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHR 497 (503)
Q Consensus 451 ----------dPd~~kAl-------------------yrlA-~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~ 497 (503)
-+++.... +... .-|....+|++|++.+...|++|..+..+++.+.+
T Consensus 171 ~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~ 247 (711)
T COG1747 171 KEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIE 247 (711)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHH
Confidence 12222222 2222 22444678999999999999999999877776654
No 427
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.25 E-value=34 Score=36.11 Aligned_cols=102 Identities=14% Similarity=0.094 Sum_probs=72.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--H--
Q 010717 386 NKGVDNQKAGQYADAIKWLSWAVILLEKSGD------MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN--V-- 455 (503)
Q Consensus 386 ~lGn~~fkqGDY~eAIk~YeKALeL~pk~~d------dpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~--~-- 455 (503)
.+|..||.+++|..-.+.+.+...-+++... .....++|..--..|-.+++-++-...|+++|.+...- +
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 3677888888888877777776665544211 12345677777788888888888888999999775322 1
Q ss_pred HHHHHH--HHHHHHcCCHHHHHHHHHHHHHhCCC
Q 010717 456 SVLVQR--ALLYESMEKYKLGAEDLRTVLKIDPS 487 (503)
Q Consensus 456 kAlyrl--A~Ay~~LGdyeeAle~LqkALkLDPe 487 (503)
....|. |..++..|+|++|..+|-+|++-..+
T Consensus 230 mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDE 263 (440)
T KOG1464|consen 230 MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDE 263 (440)
T ss_pred HhHHHHcCCccccccchHHHHHhHHHHHHhcccc
Confidence 122222 77888999999999999999987543
No 428
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=55.92 E-value=3.1e+02 Score=31.49 Aligned_cols=111 Identities=16% Similarity=0.088 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHH
Q 010717 384 AKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDT------NVSV 457 (503)
Q Consensus 384 lk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd------~~kA 457 (503)
....+......+++..|...|+...+-. |....+-........++++.+.+....+......+. ..+.
T Consensus 369 ~L~~a~f~e~~~n~~~A~~~lq~i~~e~------pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l 442 (577)
T KOG1258|consen 369 HLLEARFEESNGNFDDAKVILQRIESEY------PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKL 442 (577)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhhC------CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHH
Confidence 3334445555677777777777766541 334444444555666777777666322111111111 1233
Q ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 010717 458 LVQRALL-YESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRLTK 500 (503)
Q Consensus 458 lyrlA~A-y~~LGdyeeAle~LqkALkLDPen~eAk~~La~Lqk 500 (503)
+...+.. +.-.++.++|...+.+++.++|.+......+.+++.
T Consensus 443 ~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 443 YVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFEL 486 (577)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHH
Confidence 3344433 333567888888899999999988777666666544
No 429
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=55.72 E-value=1.2e+02 Score=32.13 Aligned_cols=27 Identities=15% Similarity=0.238 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717 457 VLVQRALLYESMEKYKLGAEDLRTVLK 483 (503)
Q Consensus 457 AlyrlA~Ay~~LGdyeeAle~LqkALk 483 (503)
++|+.|..+...++|-+|+..|+.+++
T Consensus 257 A~y~~a~~~~e~~k~GeaIa~L~~A~~ 283 (346)
T cd09240 257 AEYHQSLVAKAQKKFGEEIARLQHALE 283 (346)
T ss_pred HHHHHHHHhhhhchHHHHHHHHHHHHH
Confidence 677788888888899999999888776
No 430
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=55.20 E-value=20 Score=29.13 Aligned_cols=17 Identities=29% Similarity=0.515 Sum_probs=10.7
Q ss_pred HcCCHHHHHHHHHHHHH
Q 010717 433 EVGEYKKAVADCSKVLE 449 (503)
Q Consensus 433 rLGdyeeALedaekALk 449 (503)
+.|+|++|+..|..+++
T Consensus 18 ~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 18 EDGNYEEALELYKEALD 34 (75)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 34667777766666654
No 431
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=54.74 E-value=81 Score=30.16 Aligned_cols=61 Identities=15% Similarity=0.078 Sum_probs=35.7
Q ss_pred HHHHHHHHHHcCCHHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717 424 LSTRASCYKEVGEYKKAVA-DCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKI 484 (503)
Q Consensus 424 ysNrAlcylrLGdyeeALe-daekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkL 484 (503)
|.++|+-++-...-++.++ .++...+...-+++.++.+|.+|.++|+..+|-+.+++|-+.
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3344443333333333333 333333344567899999999999999999999999988764
No 432
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=54.27 E-value=21 Score=27.08 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 010717 425 STRASCYKEVGEYKKAVADCSKVLEQ 450 (503)
Q Consensus 425 sNrAlcylrLGdyeeALedaekALkL 450 (503)
+++|..|+++|+++.|.+.+++++.-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 57899999999999999999999953
No 433
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=53.91 E-value=38 Score=21.66 Aligned_cols=25 Identities=8% Similarity=-0.076 Sum_probs=11.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHH
Q 010717 470 KYKLGAEDLRTVLKIDPSNRIARST 494 (503)
Q Consensus 470 dyeeAle~LqkALkLDPen~eAk~~ 494 (503)
++++|.+.|+++++..|.+..+...
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~ 26 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLK 26 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHH
Confidence 3444555555555555544444333
No 434
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=53.74 E-value=65 Score=36.67 Aligned_cols=104 Identities=12% Similarity=0.135 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHcC-
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGE-------YKKAVADCSKVLEQD- 451 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGd-------yeeALedaekALkLd- 451 (503)
.-......|..+..+|++.+|+.+|..|-++.. -...+...++.+...... -++-+...++.++..
T Consensus 413 ~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d~------vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~ 486 (613)
T PF04097_consen 413 LREIIEQAAREAEERGRFEDAILLYHLAEEYDK------VLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYK 486 (613)
T ss_dssp HHHHHHHHHHHHHHCT-HHHHHHHHHHTT-HHH------HHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhhHHH------HHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHH
Confidence 445566778999999999999999987765511 111222334444433333 122222222222221
Q ss_pred ----------CCCHH---HHHHH--HHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 010717 452 ----------DTNVS---VLVQR--ALLYESMEKYKLGAEDLRTVLKIDPSNRI 490 (503)
Q Consensus 452 ----------Pd~~k---Alyrl--A~Ay~~LGdyeeAle~LqkALkLDPen~e 490 (503)
+...+ .++.+ ..-++..|+|++|++.+++ |.+-|.+..
T Consensus 487 ~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~-L~liP~~~~ 539 (613)
T PF04097_consen 487 SNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEK-LDLIPLDPS 539 (613)
T ss_dssp TSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH-TT-S-S-HH
T ss_pred hCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCCHH
Confidence 11112 23333 4456788999999999875 457786644
No 435
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=52.90 E-value=1.1e+02 Score=33.12 Aligned_cols=81 Identities=19% Similarity=0.195 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----C--CCHHHHHHHHHHHHHcCCH
Q 010717 398 ADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD----D--TNVSVLVQRALLYESMEKY 471 (503)
Q Consensus 398 ~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd----P--d~~kAlyrlA~Ay~~LGdy 471 (503)
++-|+-++++++-.+++..+..-.+++.+.+..|.+.++-+.|++.+++..+-. - +-.-...++|..|....=.
T Consensus 81 eeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV 160 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLV 160 (393)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHH
Confidence 344555666665544443355667899999999999999999999998766532 1 1223455667777665443
Q ss_pred HHHHHHH
Q 010717 472 KLGAEDL 478 (503)
Q Consensus 472 eeAle~L 478 (503)
.+-++..
T Consensus 161 ~~~ieka 167 (393)
T KOG0687|consen 161 TESIEKA 167 (393)
T ss_pred HHHHHHH
Confidence 3333333
No 436
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=52.47 E-value=1.5e+02 Score=33.90 Aligned_cols=101 Identities=17% Similarity=0.011 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAV-ILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD-DTNVSV 457 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKAL-eL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd-Pd~~kA 457 (503)
...-....+.+++++++...|..++.+.- +| .+....+.-..++++.+..+++..|++.+.+...-+ +..-++
T Consensus 62 ~~~~~llAa~al~~e~k~~qA~~Ll~ql~~~L-----td~Q~~~~~LL~ael~la~~q~~~Al~~L~~~~~~~ls~~Qq~ 136 (604)
T COG3107 62 QNDWLLLAARALVEEGKTAQAQALLNQLPQEL-----TDAQRAEKSLLAAELALAQKQPAAALQQLAKLLPADLSQNQQA 136 (604)
T ss_pred hhhHHHHHHHHHHHcCChHHHHHHHHhccccC-----CHHHHHHHHHHHHHHHHhccChHHHHHHHhhcchhhcCHHHHH
Confidence 33444455788899999999999988764 33 123344445557888899999999999998876543 444566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 010717 458 LVQRALLYESMEKYKLGAEDLRTVLKIDP 486 (503)
Q Consensus 458 lyrlA~Ay~~LGdyeeAle~LqkALkLDP 486 (503)
.|.++.+-....+ ..+++..+.-+.++|
T Consensus 137 Ry~q~~a~a~ea~-~~~~~a~rari~~~~ 164 (604)
T COG3107 137 RYYQARADALEAR-GDSIDAARARIAQDP 164 (604)
T ss_pred HHHHHHHHHHhcc-cchHHHHHHHHHhhh
Confidence 6666555444333 234555555555555
No 437
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=52.38 E-value=38 Score=36.71 Aligned_cols=65 Identities=17% Similarity=0.028 Sum_probs=50.4
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHHHHcCCHHHHHHH
Q 010717 379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSG--DMATMMEVLSTRASCYKEVGEYKKAVAD 443 (503)
Q Consensus 379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~--ddpd~A~aysNrAlcylrLGdyeeALed 443 (503)
..+..+...|+.+++.++|..|+..|..|..++...- .......+++.+|..++++.+++.++-.
T Consensus 39 ~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~ 105 (400)
T KOG4563|consen 39 KTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLG 105 (400)
T ss_pred HHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566788899999999999999999999999876421 1234566777788888888887766543
No 438
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=52.17 E-value=2.6e+02 Score=33.41 Aligned_cols=101 Identities=12% Similarity=0.099 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHc---CCHHHHHHHH----HHHHHcCCC
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEV---GEYKKAVADC----SKVLEQDDT 453 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrL---GdyeeALeda----ekALkLdPd 453 (503)
-..+...|..+-..|+|++||.+|..|=+.+. -.-.+..+++.+.... +...+.+.++ ...+.-++.
T Consensus 622 ~~i~~~vA~~a~~~G~~~~sI~LY~lag~yd~------al~link~LS~~l~~~~~~~~n~erl~~La~~~~~~y~~~~~ 695 (835)
T KOG2168|consen 622 QKIILEVASEADEDGLFEDAILLYHLAGDYDK------ALELINKLLSQVLHSPTLGQSNKERLGDLALSMNDIYESNKG 695 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhH------HHHHHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHHHhccC
Confidence 34556678899999999999999987765521 1122333444443332 1112222222 222333333
Q ss_pred CHH-----HHH---H--HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717 454 NVS-----VLV---Q--RALLYESMEKYKLGAEDLRTVLKIDPSN 488 (503)
Q Consensus 454 ~~k-----Aly---r--lA~Ay~~LGdyeeAle~LqkALkLDPen 488 (503)
... .+. . ...=++..+++++|+..++ .|++-|.+
T Consensus 696 ~~~~~~~~t~~lLl~~~~~f~~y~~~~~e~aL~~le-~l~LiP~~ 739 (835)
T KOG2168|consen 696 DSAKVVVKTLSLLLDLVSFFDLYHNGEWEEALSILE-HLDLIPLD 739 (835)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHhccCCC
Confidence 322 122 2 2444677889999999887 44555544
No 439
>PF15469 Sec5: Exocyst complex component Sec5
Probab=51.74 E-value=2.1e+02 Score=26.93 Aligned_cols=19 Identities=11% Similarity=0.116 Sum_probs=11.6
Q ss_pred CHHHHHHHHHHHHHhCCCC
Q 010717 470 KYKLGAEDLRTVLKIDPSN 488 (503)
Q Consensus 470 dyeeAle~LqkALkLDPen 488 (503)
..++.++.+...++|+++.
T Consensus 154 s~~~~~~~i~~Ll~L~~~~ 172 (182)
T PF15469_consen 154 SQEEFLKLIRKLLELNVEE 172 (182)
T ss_pred CHHHHHHHHHHHHhCCCCC
Confidence 4556666666666666643
No 440
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=51.10 E-value=84 Score=28.89 Aligned_cols=74 Identities=12% Similarity=0.108 Sum_probs=48.0
Q ss_pred HHHHHHHHHHH---HhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHH
Q 010717 401 IKWLSWAVILL---EKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD--DTNVSVLVQRALLYESMEKYKLGA 475 (503)
Q Consensus 401 Ik~YeKALeL~---pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLd--Pd~~kAlyrlA~Ay~~LGdyeeAl 475 (503)
..++++++... ++..+++....+|...+.+. +++.+.|+...... -..+..|..-|..+...|++.+|.
T Consensus 46 ~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~ 119 (125)
T smart00777 46 LTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKAD 119 (125)
T ss_pred HHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 33444444432 34456777777877777653 33555666655544 344555666699999999999999
Q ss_pred HHHHH
Q 010717 476 EDLRT 480 (503)
Q Consensus 476 e~Lqk 480 (503)
+.|+.
T Consensus 120 ~iy~~ 124 (125)
T smart00777 120 EVYQL 124 (125)
T ss_pred HHHHc
Confidence 99874
No 441
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=51.00 E-value=20 Score=28.64 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=16.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717 425 STRASCYKEVGEYKKAVADCSKVLE 449 (503)
Q Consensus 425 sNrAlcylrLGdyeeALedaekALk 449 (503)
...|.-+-+.|+|++|+..|.+++.
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344445557778888777777664
No 442
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=50.68 E-value=49 Score=35.15 Aligned_cols=57 Identities=14% Similarity=0.085 Sum_probs=47.2
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010717 385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKV 447 (503)
Q Consensus 385 k~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekA 447 (503)
...+..|...+.+.+|+++.++++.+ +|.+.+.+..+-.++..+|+--.|++.|++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltl------dpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTL------DPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhc------ChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34467788899999999999999998 6677788888889999999977777777653
No 443
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=50.61 E-value=85 Score=33.52 Aligned_cols=90 Identities=16% Similarity=0.179 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HcC--CCCHHHHHHHHHHHHHcC
Q 010717 396 QYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVL----EQD--DTNVSVLVQRALLYESME 469 (503)
Q Consensus 396 DY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekAL----kLd--Pd~~kAlyrlA~Ay~~LG 469 (503)
.+++-++.++..|+...+....-...++-+.+...+++.+.|.+|+..+.-.+ ++| +.-...|+....+|....
T Consensus 100 sl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~ir 179 (421)
T COG5159 100 SLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIR 179 (421)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHH
Confidence 44555555555555433322222334455677888999999999999887665 233 455778889999999999
Q ss_pred CHHHHHHHHHHHHHhC
Q 010717 470 KYKLGAEDLRTVLKID 485 (503)
Q Consensus 470 dyeeAle~LqkALkLD 485 (503)
+..++...+..|-.+.
T Consensus 180 nv~KskaSLTaArt~A 195 (421)
T COG5159 180 NVSKSKASLTAARTLA 195 (421)
T ss_pred hhhhhhhHHHHHHHHh
Confidence 9999888887665543
No 444
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=50.60 E-value=1.2e+02 Score=27.54 Aligned_cols=65 Identities=11% Similarity=0.026 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 010717 422 EVLSTRASCYKEVGEYKKAVADCSKVLEQDDT----------------NVSVLVQRALLYESMEKYKLGAEDLRTVLKID 485 (503)
Q Consensus 422 ~aysNrAlcylrLGdyeeALedaekALkLdPd----------------~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLD 485 (503)
+++.++-.++.+.|+.+....++++.-.++.+ ..+.+.....+|...+++..|++.+....+..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 46667777788888888888888776555421 24577778888988999999999998888887
Q ss_pred C
Q 010717 486 P 486 (503)
Q Consensus 486 P 486 (503)
|
T Consensus 83 ~ 83 (126)
T PF12921_consen 83 P 83 (126)
T ss_pred C
Confidence 7
No 445
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=50.37 E-value=2.2e+02 Score=28.50 Aligned_cols=99 Identities=16% Similarity=0.074 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------
Q 010717 382 AAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDM-ATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTN------ 454 (503)
Q Consensus 382 ~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~dd-pd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~------ 454 (503)
..+...+..+..++++++|.+.+++|.++..+.... ..... ++.-+.|--.+.+|.+|...+.-.-.-+-..
T Consensus 30 ~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pe-l~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL~V 108 (204)
T COG2178 30 VRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPE-LYFAGFVTTALQEYVEATLLYSILKDGRLPSPEELGV 108 (204)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHcCC
Confidence 344556667788999999999999999876653211 11222 2334566666778888888776554332111
Q ss_pred HHHHHH------------HHHHHHHcCCHHHHHHHHHHH
Q 010717 455 VSVLVQ------------RALLYESMEKYKLGAEDLRTV 481 (503)
Q Consensus 455 ~kAlyr------------lA~Ay~~LGdyeeAle~LqkA 481 (503)
+...|. ...-....+++++|.+.+.-+
T Consensus 109 ~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~M 147 (204)
T COG2178 109 PPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFM 147 (204)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 112233 344456678888887765543
No 446
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=50.33 E-value=1.1e+02 Score=35.99 Aligned_cols=39 Identities=13% Similarity=0.214 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717 456 SVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL 498 (503)
Q Consensus 456 kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L 498 (503)
.+||..|+-+....+++||-++|.++=+ ..|+...|.++
T Consensus 805 dVy~pyaqwLAE~DrFeEAqkAfhkAGr----~~EA~~vLeQL 843 (1081)
T KOG1538|consen 805 DVYMPYAQWLAENDRFEEAQKAFHKAGR----QREAVQVLEQL 843 (1081)
T ss_pred cccchHHHHhhhhhhHHHHHHHHHHhcc----hHHHHHHHHHh
Confidence 4788889999999999999998887744 34555555444
No 447
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=50.04 E-value=3.7e+02 Score=29.29 Aligned_cols=68 Identities=15% Similarity=0.109 Sum_probs=47.3
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717 379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMA-TMMEVLSTRASCYKEVGEYKKAVADCSKVLE 449 (503)
Q Consensus 379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddp-d~A~aysNrAlcylrLGdyeeALedaekALk 449 (503)
++.+.++..+...|.-|+|..|..++-.-..+.+. . ++ ....+|-.+|.- ..+-+.+.|++++.+..+
T Consensus 127 e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~-~-d~n~lsalwGKlASE-IL~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 127 ERIETLYKYAKFQYECGNYSGASDYLYFYRALVSD-P-DRNYLSALWGKLASE-ILTQNWDGALEDLTRLRE 195 (432)
T ss_pred HHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCC-c-chhhHHHHHHHHHHH-HHHhhHHHHHHHHHHHHH
Confidence 46788899999999999999999987666555332 1 22 334455555543 345678889888877664
No 448
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=49.80 E-value=63 Score=32.90 Aligned_cols=53 Identities=8% Similarity=0.001 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 010717 397 YADAIKWLSWAVILLEK--SGDMATMMEVLSTRASCYKE-VGEYKKAVADCSKVLE 449 (503)
Q Consensus 397 Y~eAIk~YeKALeL~pk--~~ddpd~A~aysNrAlcylr-LGdyeeALedaekALk 449 (503)
-+.|.+.|++|+++..+ .+-+|....+..|.+..|++ +++.++|++.+++|+.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44788889999888553 23356666677777777766 5888888888877764
No 449
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=49.78 E-value=46 Score=21.25 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 010717 436 EYKKAVADCSKVLEQDDTNVSVLVQRA 462 (503)
Q Consensus 436 dyeeALedaekALkLdPd~~kAlyrlA 462 (503)
+.++|...|+++++..|.....|....
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 345555555555555555555554433
No 450
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=49.07 E-value=2.1e+02 Score=26.26 Aligned_cols=87 Identities=15% Similarity=0.003 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 010717 384 AKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRAL 463 (503)
Q Consensus 384 lk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~ 463 (503)
+..++....-....++|..++...-.. +.....+..-|...++..|+|++|+. +.+.-.++..---.+.
T Consensus 9 LAElAL~atG~HcH~EA~tIa~wL~~~------~~~~E~v~lIr~~sLmNrG~Yq~ALl-----~~~~~~~pdL~p~~AL 77 (116)
T PF09477_consen 9 LAELALMATGHHCHQEANTIADWLEQE------GEMEEVVALIRLSSLMNRGDYQEALL-----LPQCHCYPDLEPWAAL 77 (116)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHHHHT------TTTHHHHHHHHHHHHHHTT-HHHHHH-----HHTTS--GGGHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhC------CcHHHHHHHHHHHHHHhhHHHHHHHH-----hcccCCCccHHHHHHH
Confidence 344455555566788888888776543 11223444557788899999999933 2344445555555677
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 010717 464 LYESMEKYKLGAEDLRTV 481 (503)
Q Consensus 464 Ay~~LGdyeeAle~LqkA 481 (503)
|-.++|--+++...|.+.
T Consensus 78 ~a~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 78 CAWKLGLASALESRLTRL 95 (116)
T ss_dssp HHHHCT-HHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHH
Confidence 788888888888777643
No 451
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=48.70 E-value=80 Score=27.64 Aligned_cols=50 Identities=12% Similarity=0.057 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 010717 421 MEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEK 470 (503)
Q Consensus 421 A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGd 470 (503)
.......|.+.+..||+++|.+.+.++.+..+...-.|+.-+.+-..+||
T Consensus 59 a~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 59 AQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 34445567777777777777777777766655444455545555555543
No 452
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.64 E-value=49 Score=35.98 Aligned_cols=108 Identities=10% Similarity=0.087 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hc---CC---
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVL-EQ---DD--- 452 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekAL-kL---dP--- 452 (503)
....++.+++...+.++...-+....+|++.+.-.. ...-.++..+..|.++.++|.-++.+++--+ ++ +|
T Consensus 101 f~~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~--~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~ 178 (422)
T KOG2582|consen 101 FFPLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSN--GQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLD 178 (422)
T ss_pred HHHHHHHHHHHHHhcCCccccchHHHHHHHHhccCc--cchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCC
Confidence 344566777777777777777788888887544322 1334566667778888899887776654322 11 22
Q ss_pred -CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 010717 453 -TN-VSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRI 490 (503)
Q Consensus 453 -d~-~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~e 490 (503)
.. ...+|.-|.+|..+++++.|+.+|+.++.. |....
T Consensus 179 ~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~-Pa~~v 217 (422)
T KOG2582|consen 179 PKYFLLYLYYGGMICIGLKRFERALYLLEICVTT-PAMAV 217 (422)
T ss_pred HHHHHHHHHhcceeeeccccHHHHHHHHHHHHhc-chhHH
Confidence 22 234555688899999999999999988865 54433
No 453
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=48.62 E-value=2.9e+02 Score=27.61 Aligned_cols=115 Identities=15% Similarity=0.141 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-Ch-hhHHHHHHHHHHHHHcCC----------------HHHHHH
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGD-MA-TMMEVLSTRASCYKEVGE----------------YKKAVA 442 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~d-dp-d~A~aysNrAlcylrLGd----------------yeeALe 442 (503)
.+-|..-+..+|+.+++.+=.+.-.-+-.++..... .. ....++ ++.|+.+..+ ++-|+-
T Consensus 13 ~dfyf~~~c~aFR~~r~~dFr~~rdi~e~ll~~~~~~~a~~~k~l~--i~QfLsRI~eG~~LD~~Fd~~~~~TPLESAl~ 90 (200)
T cd00280 13 LDFYFHSACRAFREGRYEDFRRTRDIAEALLVGPLKLTATQLKTLR--IMQFLSRIAEGKNLDCQFENDEELTPLESALM 90 (200)
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHhccccccccchhHhH--HHHHHHHHHcCCCCCCccCCCCCcChHHHHHH
Confidence 345667788899999887755543333222222110 11 111112 2333333211 455666
Q ss_pred HHHHHHHcCCCC------HHHHH--HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010717 443 DCSKVLEQDDTN------VSVLV--QRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTIHRL 498 (503)
Q Consensus 443 daekALkLdPd~------~kAly--rlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~La~L 498 (503)
.++..-+-.+.. .+-++ ....+++..|++++|.+.|++... +|+....+..|..+
T Consensus 91 v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~I 153 (200)
T cd00280 91 VLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMI 153 (200)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHH
Confidence 665554433321 12222 236778999999999999999999 88887766666654
No 454
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=47.50 E-value=76 Score=27.79 Aligned_cols=32 Identities=25% Similarity=0.245 Sum_probs=28.0
Q ss_pred chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 010717 379 VTGAAAKNKGVDNQKAGQYADAIKWLSWAVIL 410 (503)
Q Consensus 379 ~~A~alk~lGn~~fkqGDY~eAIk~YeKALeL 410 (503)
+++......|...+..|||..|.+...++.+.
T Consensus 57 ~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 57 RKAQRALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 45677888999999999999999999999765
No 455
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=46.82 E-value=41 Score=22.95 Aligned_cols=29 Identities=7% Similarity=0.042 Sum_probs=15.9
Q ss_pred HHHHHHH--HHHHHcC-----CHHHHHHHHHHHHHh
Q 010717 456 SVLVQRA--LLYESME-----KYKLGAEDLRTVLKI 484 (503)
Q Consensus 456 kAlyrlA--~Ay~~LG-----dyeeAle~LqkALkL 484 (503)
++++.+| .+|..-. ++++|+++|+++-+.
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 4566666 4333332 356666666666543
No 456
>PRK11619 lytic murein transglycosylase; Provisional
Probab=46.64 E-value=1.2e+02 Score=35.10 Aligned_cols=56 Identities=11% Similarity=-0.009 Sum_probs=40.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717 428 ASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLK 483 (503)
Q Consensus 428 AlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALk 483 (503)
....++.++.+.+...+...-.......+.+|-+|.++..+|+.++|...|+++.+
T Consensus 319 ~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 319 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 34445677777666666554333334677899999999999999999999998754
No 457
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=46.40 E-value=40 Score=28.71 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 010717 383 AAKNKGVDNQKAGQYADAIKWLSWAVILLE 412 (503)
Q Consensus 383 alk~lGn~~fkqGDY~eAIk~YeKALeL~p 412 (503)
.+.++|..+-..|+.++|+.+|++++..+.
T Consensus 10 ~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~ 39 (79)
T cd02679 10 EEISKALRADEWGDKEQALAHYRKGLRELE 39 (79)
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHHHHHHHH
Confidence 344444444444555555555555554433
No 458
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=45.94 E-value=3.1e+02 Score=29.34 Aligned_cols=27 Identities=7% Similarity=-0.095 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717 457 VLVQRALLYESMEKYKLGAEDLRTVLK 483 (503)
Q Consensus 457 AlyrlA~Ay~~LGdyeeAle~LqkALk 483 (503)
++|+.|..+...++|.+++..|+.++.
T Consensus 254 A~y~~a~~~~~~~k~Ge~Ia~L~~A~~ 280 (361)
T cd09239 254 AHLHMGKQSEEQQKMGERVAYYQLAND 280 (361)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 566777777777888888888877766
No 459
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=45.81 E-value=61 Score=33.93 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=41.3
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010717 433 EVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVL 482 (503)
Q Consensus 433 rLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkAL 482 (503)
..+++.+.++.+++.+...|-|.+.+|..+.++..+| ++++.+.++..+
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el 159 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDEL 159 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHH
Confidence 5677899999999999999999999999999999999 566655554433
No 460
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=45.46 E-value=1.9e+02 Score=25.89 Aligned_cols=58 Identities=21% Similarity=0.187 Sum_probs=37.7
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010717 390 DNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVL 448 (503)
Q Consensus 390 ~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekAL 448 (503)
.+...|+.+.|+++.++-...+.+.. ......++...-.-.++.++..+|++++++-+
T Consensus 10 ~~I~~g~i~~Ai~w~~~~~~~l~~~~-~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l 67 (145)
T PF10607_consen 10 QAILNGDIDPAIEWLNENFPELLKRN-SSLEFELRCQQFIELLREGDIMEAIEYARKHL 67 (145)
T ss_pred HHHHcCCHHHHHHHHHHcCHHHHhcC-CchhHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 34589999999999887653322221 22233444444444566788999999999865
No 461
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.39 E-value=1.2e+02 Score=35.30 Aligned_cols=18 Identities=22% Similarity=0.087 Sum_probs=11.2
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 010717 464 LYESMEKYKLGAEDLRTV 481 (503)
Q Consensus 464 Ay~~LGdyeeAle~LqkA 481 (503)
+|..+|+++++++.|.+-
T Consensus 730 ~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 730 AYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHcCCHHHHHHHHHhc
Confidence 456666777666666544
No 462
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=44.90 E-value=36 Score=22.73 Aligned_cols=27 Identities=11% Similarity=0.094 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHHH
Q 010717 457 VLVQRALLYESM----EKYKLGAEDLRTVLK 483 (503)
Q Consensus 457 AlyrlA~Ay~~L----GdyeeAle~LqkALk 483 (503)
+++.+|.+|..- .++++|+.+|+++.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 455555555432 255666666665544
No 463
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=44.88 E-value=2.5e+02 Score=30.04 Aligned_cols=27 Identities=11% Similarity=-0.007 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717 457 VLVQRALLYESMEKYKLGAEDLRTVLK 483 (503)
Q Consensus 457 AlyrlA~Ay~~LGdyeeAle~LqkALk 483 (503)
+||+.|..+...+++-+|+..|+.+.+
T Consensus 250 A~y~~a~~l~e~~k~GeaIa~L~~A~~ 276 (353)
T cd09243 250 AYCYHGETLLAKDKCGEAIRSLQESEK 276 (353)
T ss_pred HHHHHHHHhHhcchHHHHHHHHHHHHH
Confidence 677788888888899999998887765
No 464
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.47 E-value=2.3e+02 Score=30.91 Aligned_cols=113 Identities=14% Similarity=-0.009 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH--cCCHHHHHHHHHHHH---------H
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKE--VGEYKKAVADCSKVL---------E 449 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylr--LGdyeeALedaekAL---------k 449 (503)
....+-+|.-|+...|++.|+--+.+|.+...+.. +-...++-.++..+-.. ..++++-+..-.+++ +
T Consensus 125 ~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~AK-e~~~~ei~ka~~e~ds~k~~~N~~~~~ae~s~~i~n~Y~ny~~~ 203 (449)
T COG3014 125 VLINYYKALNYMLLNDSAKARVEFNRANERQRRAK-EFYYEEVQKAIKEIDSSKHNINMERSRAEVSEILNNTYSNYLDK 203 (449)
T ss_pred HHHHHHHHhhHHHhcchhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 33445567778888888888777777765532211 00011111111111110 111222222222222 1
Q ss_pred c----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 010717 450 Q----DDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARST 494 (503)
Q Consensus 450 L----dPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~ 494 (503)
. +=.++.+-|+.+..+...+++.++...+.+++-+.|+...+.+.
T Consensus 204 yea~~~l~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~~~~~~q 252 (449)
T COG3014 204 YEAYQGLLNPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQSPFVAQ 252 (449)
T ss_pred HHhhcccchHHHHHHHHHhcccCccHhHHHHHHHHHhccCchhhHHHHH
Confidence 1 12356788889999999999999999999999998885544433
No 465
>PF12854 PPR_1: PPR repeat
Probab=44.29 E-value=43 Score=23.37 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010717 421 MEVLSTRASCYKEVGEYKKAVADCSK 446 (503)
Q Consensus 421 A~aysNrAlcylrLGdyeeALedaek 446 (503)
...|.-+-.+|.+.|+.++|++.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45566666777777777777776654
No 466
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=44.07 E-value=35 Score=21.85 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=11.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 010717 425 STRASCYKEVGEYKKAVADCSKVL 448 (503)
Q Consensus 425 sNrAlcylrLGdyeeALedaekAL 448 (503)
..+-.+|.+.+++++|++.+++.+
T Consensus 4 ~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 4 NSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHccchHHHHHHHHHHHh
Confidence 334444445555555555554443
No 467
>PF13041 PPR_2: PPR repeat family
Probab=43.51 E-value=97 Score=22.69 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 010717 423 VLSTRASCYKEVGEYKKAVADCSKVLEQ 450 (503)
Q Consensus 423 aysNrAlcylrLGdyeeALedaekALkL 450 (503)
.|.-+-.+|.+.|++++|++.+++.++.
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3444445555555555555555555543
No 468
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=43.42 E-value=61 Score=39.79 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=18.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 010717 426 TRASCYKEVGEYKKAVADCSKVL 448 (503)
Q Consensus 426 NrAlcylrLGdyeeALedaekAL 448 (503)
+-+..|.+.|+.++|++.|+.|.
T Consensus 957 ~Aal~Ye~~GklekAl~a~~~~~ 979 (1265)
T KOG1920|consen 957 EAALMYERCGKLEKALKAYKECG 979 (1265)
T ss_pred HHHHHHHHhccHHHHHHHHHHhc
Confidence 34777888899999999887654
No 469
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=43.36 E-value=51 Score=21.23 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=14.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717 424 LSTRASCYKEVGEYKKAVADCSKVLE 449 (503)
Q Consensus 424 ysNrAlcylrLGdyeeALedaekALk 449 (503)
|..+-.+|.+.+++++|++.+++..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444555666666666666655443
No 470
>cd08977 SusD starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.
Probab=43.35 E-value=59 Score=33.56 Aligned_cols=53 Identities=21% Similarity=0.255 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHhcC-----------CChhhHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHH
Q 010717 397 YADAIKWLSWAVILLEKSG-----------DMATMMEVLSTRASCYKEVG-----EYKKAVADCSKVLE 449 (503)
Q Consensus 397 Y~eAIk~YeKALeL~pk~~-----------ddpd~A~aysNrAlcylrLG-----dyeeALedaekALk 449 (503)
|+..++.+++|+++++... .......++..++.+|+.++ ++++|++.+++++.
T Consensus 141 y~~i~~dL~~A~~~L~~~~~~~~~~~~~~~~r~~k~aA~al~ar~~L~~~~~~~~~~~~A~~~~~~vi~ 209 (359)
T cd08977 141 YTQILADLDEAIALLPEASSAQDFYIYFGDGRAWKKAARALLARVYLYLANYTAADYAEALTAAEKSFK 209 (359)
T ss_pred HHHHHHHHHHHHHhccccccccccccccCcchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 4445555666666554321 13355667888899999999 89999999999986
No 471
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=42.74 E-value=2.3e+02 Score=29.70 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717 457 VLVQRALLYESMEKYKLGAEDLRTVLK 483 (503)
Q Consensus 457 AlyrlA~Ay~~LGdyeeAle~LqkALk 483 (503)
++|..|..+...++|.+|+..|+++.+
T Consensus 241 A~y~~A~~~~~~~~~G~aia~L~~A~~ 267 (377)
T PF03097_consen 241 AHYHQALAAEEAKKYGEAIARLRRAEE 267 (377)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 666777778888888888777776654
No 472
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=41.83 E-value=3.4e+02 Score=31.33 Aligned_cols=88 Identities=11% Similarity=-0.045 Sum_probs=54.6
Q ss_pred HHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Q 010717 392 QKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKY 471 (503)
Q Consensus 392 fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdy 471 (503)
.+..-...|...|.+|-+. +...+..-+.+.+- -|...++.+-|...++-.|+..++.+..-+....-|..+++-
T Consensus 377 rR~eGlkaaR~iF~kaR~~----~r~~hhVfVa~A~m-Ey~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd 451 (656)
T KOG1914|consen 377 RRAEGLKAARKIFKKARED----KRTRHHVFVAAALM-EYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDD 451 (656)
T ss_pred HHhhhHHHHHHHHHHHhhc----cCCcchhhHHHHHH-HHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcc
Confidence 3334455555566665543 11222222333222 234577788888888888888877777766777777777777
Q ss_pred HHHHHHHHHHHHh
Q 010717 472 KLGAEDLRTVLKI 484 (503)
Q Consensus 472 eeAle~LqkALkL 484 (503)
..|...|++++..
T Consensus 452 ~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 452 NNARALFERVLTS 464 (656)
T ss_pred hhHHHHHHHHHhc
Confidence 7788888877776
No 473
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=41.78 E-value=2.6e+02 Score=29.61 Aligned_cols=27 Identities=26% Similarity=0.219 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717 457 VLVQRALLYESMEKYKLGAEDLRTVLK 483 (503)
Q Consensus 457 AlyrlA~Ay~~LGdyeeAle~LqkALk 483 (503)
++|+.|..+...++|-+++..|+.++.
T Consensus 239 A~y~~a~~~~e~~k~Ge~Ia~L~~A~~ 265 (355)
T cd09241 239 AHYRMALVALEKSKYGEEVARLRVALA 265 (355)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 567777777777888888888887776
No 474
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=41.15 E-value=3.2e+02 Score=25.95 Aligned_cols=65 Identities=15% Similarity=0.152 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH------HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717 420 MMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSV------LVQRALLYESMEKYKLGAEDLRTVLKI 484 (503)
Q Consensus 420 ~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kA------lyrlA~Ay~~LGdyeeAle~LqkALkL 484 (503)
...++.|...++++.++++.|...+++.-.+.-..... .|..|.+.+..|+.+++.+..++++++
T Consensus 127 i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g~~~~~~~~i~~~i~~ 197 (220)
T TIGR01716 127 VIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEGQKESGEEKIEQAIEI 197 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Confidence 45677788878888889999999998876654211122 333455556667655555555554443
No 475
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=40.05 E-value=1.8e+02 Score=23.79 Aligned_cols=13 Identities=23% Similarity=0.146 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHH
Q 010717 398 ADAIKWLSWAVIL 410 (503)
Q Consensus 398 ~eAIk~YeKALeL 410 (503)
..|+.+..+|++.
T Consensus 4 ~~A~~l~~~Av~~ 16 (75)
T cd02678 4 QKAIELVKKAIEE 16 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 4566666666655
No 476
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=39.61 E-value=1.5e+02 Score=33.75 Aligned_cols=73 Identities=11% Similarity=-0.085 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHH
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGE-YKKAVADCSKVLEQDDTNVSVLV 459 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGd-yeeALedaekALkLdPd~~kAly 459 (503)
...|.....-.-+.+.|.+--+.|.+++.+ .|..+.+|.-.|.-.++.+. .+.|...+.++|+.+|+.++.++
T Consensus 105 ~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~------Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 105 VKLWLSYIAFCKKKKTYGEVKKIFAAMLAK------HPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHh------CCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence 344544444444555588888999999988 55667888877777777776 89999999999999999987654
No 477
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=39.47 E-value=1.2e+02 Score=32.64 Aligned_cols=43 Identities=19% Similarity=0.173 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHHcCCHHHHHHHHH
Q 010717 437 YKKAVADCSKVLEQDDTNVSVLV-QRALLYESMEKYKLGAEDLR 479 (503)
Q Consensus 437 yeeALedaekALkLdPd~~kAly-rlA~Ay~~LGdyeeAle~Lq 479 (503)
|..|++||..+|+...+..++.- -++.|+..|.+-++-.++|+
T Consensus 33 Y~~aleYF~~~lKYE~~~~kaKd~IraK~~EYLdRAEkLK~yL~ 76 (439)
T KOG0739|consen 33 YQNALEYFLHALKYEANNKKAKDSIRAKFTEYLDRAEKLKAYLK 76 (439)
T ss_pred HHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555443333322 23555555555444444443
No 478
>PF15469 Sec5: Exocyst complex component Sec5
Probab=38.91 E-value=3.4e+02 Score=25.57 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 010717 401 IKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDD 452 (503)
Q Consensus 401 Ik~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaekALkLdP 452 (503)
++.+..++.++.+. .....+-..+-.| ++.++|+.++.+|.++..+.-
T Consensus 70 ~~~l~~~l~~l~r~---~flF~LP~~L~~~-i~~~dy~~~i~dY~kak~l~~ 117 (182)
T PF15469_consen 70 ADKLRNALEFLQRN---RFLFNLPSNLREC-IKKGDYDQAINDYKKAKSLFE 117 (182)
T ss_pred HHHHHHHHHHHHHH---HHHHHhHHHHHHH-HHcCcHHHHHHHHHHHHHHHH
Confidence 33444555554432 1122233334334 578999999999999988753
No 479
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=38.73 E-value=1.8e+02 Score=34.76 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 010717 453 TNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSN 488 (503)
Q Consensus 453 d~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen 488 (503)
....++++++.-+...|++++|-..|-++++++.-|
T Consensus 993 k~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 993 KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred cCccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 456789999999999999999999999999998543
No 480
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.64 E-value=1.4e+02 Score=31.84 Aligned_cols=102 Identities=12% Similarity=0.011 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHH------HcCC
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKE-VGEYKKAVADCSKVL------EQDD 452 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylr-LGdyeeALedaekAL------kLdP 452 (503)
-..+++..-.++|+.++|++-++.|.+.+..+...--.. ..+-..|--.-|.. ..+.+---+.|+..| +.+.
T Consensus 64 GFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN-ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeR 142 (440)
T KOG1464|consen 64 GFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN-YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNER 142 (440)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcce
Confidence 345677888889999999999999999988765321000 11111111111111 111111112222222 2234
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010717 453 TNVSVLVQRALLYESMEKYKLGAEDLRTVL 482 (503)
Q Consensus 453 d~~kAlyrlA~Ay~~LGdyeeAle~LqkAL 482 (503)
-|.+.-..+|.+|+.+++|.+-...+++..
T Consensus 143 LWFKTNtKLgkl~fd~~e~~kl~KIlkqLh 172 (440)
T KOG1464|consen 143 LWFKTNTKLGKLYFDRGEYTKLQKILKQLH 172 (440)
T ss_pred eeeeccchHhhhheeHHHHHHHHHHHHHHH
Confidence 566677778889888888877655554433
No 481
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=37.93 E-value=2.3e+02 Score=30.78 Aligned_cols=68 Identities=18% Similarity=0.058 Sum_probs=55.6
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717 417 MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQD----DTNVSVLVQRALLYESMEKYKLGAEDLRTVLKI 484 (503)
Q Consensus 417 dpd~A~aysNrAlcylrLGdyeeALedaekALkLd----Pd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkL 484 (503)
.++..+.++..+...++.|+|..|-.++-.++.+- ++...+++-+=..-..+.+|+-|++++.+.-+.
T Consensus 125 ~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~ 196 (432)
T KOG2758|consen 125 TPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREY 196 (432)
T ss_pred CHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 56788889999999999999999988887776653 445677887777778888999999998887664
No 482
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=37.90 E-value=4.8 Score=44.65 Aligned_cols=196 Identities=13% Similarity=0.045 Sum_probs=102.2
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCCCCccCcccccc---------CCCCCCCCcccccc----cc
Q 010717 288 FMGSNMGDFGMPAMDHSTQNKPSSQSQSTGGDPLGMFFSSSSASAGVGATA---------SGGGQPFSEVDDWG----YS 354 (503)
Q Consensus 288 ~~~~~~~~~~~pa~~~~~~p~~~~AA~~~~rd~VE~LFp~Ts~~~ta~~~g---------gaGaq~fsev~DW~----Vd 354 (503)
+-++.|+||.|++ -||.-=-.+++.. +.+|.++.|+-..+-.-.-...| ++-.+..+..-.|+ ++
T Consensus 135 yLvE~gad~~Ian-rhGhTcLmIa~yk-Gh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d 212 (615)
T KOG0508|consen 135 YLVEHGADPEIAN-RHGHTCLMIACYK-GHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVD 212 (615)
T ss_pred HHHHcCCCCcccc-cCCCeeEEeeecc-CchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeeec
Confidence 4578999999999 8898888777654 57999999987655321100000 00111111122331 11
Q ss_pred ccCCCCC----CCcccHHHhCCC--CCCCcchHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhcCC--------Chh
Q 010717 355 DFGGGTD----DGGTTTELEGLP--PPPAGVTGAAAKNKGVDNQ-KAGQYADAIKWLSWAVILLEKSGD--------MAT 419 (503)
Q Consensus 355 ~f~ag~d----~eaae~eLEaL~--~~~~~~~A~alk~lGn~~f-kqGDY~eAIk~YeKALeL~pk~~d--------dpd 419 (503)
.++.... ...-...++.+. ......+.+++..+|..+. ++.|...|++++.++++.-....+ +|.
T Consensus 213 ~~GmtPL~~Aa~tG~~~iVe~L~~~~~sr~~riealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p~ 292 (615)
T KOG0508|consen 213 GHGMTPLLLAAVTGHTDIVERLLQCETSRESRIEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLEPV 292 (615)
T ss_pred CCCCchHHHHhhhcchHHHHHHhcCCcchhhHHHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCCch
Confidence 1111100 001111222222 2233446777888887774 455788899999999986433111 111
Q ss_pred hHHHH----HHHHHHHHHcCCHHHHHH--HHHHHHHcCCCCHHHHHH---HHHHHHHcCCHHHHHHHHHHHHHhC
Q 010717 420 MMEVL----STRASCYKEVGEYKKAVA--DCSKVLEQDDTNVSVLVQ---RALLYESMEKYKLGAEDLRTVLKID 485 (503)
Q Consensus 420 ~A~ay----sNrAlcylrLGdyeeALe--daekALkLdPd~~kAlyr---lA~Ay~~LGdyeeAle~LqkALkLD 485 (503)
.+.-| .++.....-..+.++-.- ..-+-.-+.|.++...|. ++.+|...++++..++.|..||.+.
T Consensus 293 ~ay~~~re~~~~~elE~lv~D~d~~RmqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mq 367 (615)
T KOG0508|consen 293 LAYGYGREVNNREELEELVEDPDEMRMQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQ 367 (615)
T ss_pred hhhhhhhhcCCHHHHHHHhcChHHHHHHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHH
Confidence 11111 111111112222221100 000111234666654443 5899999999999999999999864
No 483
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.63 E-value=29 Score=41.20 Aligned_cols=25 Identities=24% Similarity=0.213 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 010717 422 EVLSTRASCYKEVGEYKKAVADCSK 446 (503)
Q Consensus 422 ~aysNrAlcylrLGdyeeALedaek 446 (503)
.++...|..+++.++|..|.+.|-+
T Consensus 390 ~Vl~~qAdf~f~~k~y~~AA~~yA~ 414 (911)
T KOG2034|consen 390 TVLLKQADFLFQDKEYLRAAEIYAE 414 (911)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3444455555555555544444433
No 484
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=37.49 E-value=2.2e+02 Score=31.75 Aligned_cols=104 Identities=14% Similarity=-0.054 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHH----HHHHHcCCCCH
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADC----SKVLEQDDTNV 455 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALeda----ekALkLdPd~~ 455 (503)
..+.+...+.++..+++|.+|.+.+.+++..+.+-........++..++.++-+-+.--.++-.+ .++-+..-+..
T Consensus 272 svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~ldyl 351 (482)
T KOG4322|consen 272 SVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYSLDYL 351 (482)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhccchh
Confidence 34556667777777777777777777777665543334444555555555554444433333333 22323332333
Q ss_pred H--HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717 456 S--VLVQRALLYESMEKYKLGAEDLRTVLK 483 (503)
Q Consensus 456 k--AlyrlA~Ay~~LGdyeeAle~LqkALk 483 (503)
+ +-..++..+..+|-.++|+..+..++.
T Consensus 352 ~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h 381 (482)
T KOG4322|consen 352 EANENLDLALEHLALGSPKAALPLLHTAVH 381 (482)
T ss_pred hhhchHHHHHHHHHcCChHHHHHHHHhhhh
Confidence 3 344456667777777777777776654
No 485
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=36.60 E-value=43 Score=36.53 Aligned_cols=46 Identities=22% Similarity=0.192 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHh
Q 010717 437 YKKAVADCSKVLEQDDTNVSVLVQRALLYESMEK------------YKLGAEDLRTVLKI 484 (503)
Q Consensus 437 yeeALedaekALkLdPd~~kAlyrlA~Ay~~LGd------------yeeAle~LqkALkL 484 (503)
..+|++++++|.. .+.++.|+.+|.+++.+|+ |++|.+.+.+|-+.
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 4567777777765 4578889999999988875 67777777777654
No 486
>PF07980 SusD: SusD family; InterPro: IPR012944 This domain occurs in several hypothetical proteins. It also occurs in RagB, Q9ZA59 from SWISSPROT, a protein involved in signalling [] and SusD, Q8A1G2 from SWISSPROT, an outer membrane protein involved in nutrient binding [].; PDB: 3IHV_A 3LEW_A 3JQ1_A 3JQ0_A 3NQP_B 3SNX_A 3L22_A 3OTN_A 3IV0_A 3QNK_C ....
Probab=36.24 E-value=60 Score=31.15 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717 420 MMEVLSTRASCYKEVGEYKKAVADCSKVLE 449 (503)
Q Consensus 420 ~A~aysNrAlcylrLGdyeeALedaekALk 449 (503)
.+++|+.+|+|+.++++.++|+++++++.+
T Consensus 132 ~aEvyL~~AEA~~~~g~~~~A~~~lN~vR~ 161 (266)
T PF07980_consen 132 LAEVYLIYAEALARLGNTAEALEYLNQVRK 161 (266)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345555566666666666666666655543
No 487
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=36.19 E-value=1.7e+02 Score=23.27 Aligned_cols=29 Identities=10% Similarity=0.052 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717 421 MEVLSTRASCYKEVGEYKKAVADCSKVLE 449 (503)
Q Consensus 421 A~aysNrAlcylrLGdyeeALedaekALk 449 (503)
..-+...-.-|+++|++++|.+++++...
T Consensus 23 ~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 23 FLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33344445556778888888887776653
No 488
>PRK10316 hypothetical protein; Provisional
Probab=36.01 E-value=4.7e+02 Score=26.38 Aligned_cols=98 Identities=15% Similarity=-0.031 Sum_probs=68.6
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC----------------------------------hhhHHHHHHHHHH
Q 010717 385 KNKGVDNQKAGQYADAIKWLSWAVILLEKSGDM----------------------------------ATMMEVLSTRASC 430 (503)
Q Consensus 385 k~lGn~~fkqGDY~eAIk~YeKALeL~pk~~dd----------------------------------pd~A~aysNrAlc 430 (503)
..+++...-+|+.+.|.++..+|..++.+...+ |.. ..-..-+.-
T Consensus 58 I~~AR~Alf~G~~~~Ak~ll~~A~~~l~~a~~D~~~f~ka~~~~p~~~d~wlPVd~e~~l~ed~~~tp~K-~~Ava~AN~ 136 (209)
T PRK10316 58 VQVARLALFHGDPEKAKELTNQASALLSDDSTDWAKFAKPDKKAPVNGDQYIVINASVGISEDYVATPEK-EAAIKIANE 136 (209)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhccHHHHHhccccCCCCCCceEEeCCeEEecccccCChhH-HHHHHHHHH
Confidence 345677777889999999888887766543211 111 123346788
Q ss_pred HHHcCCHHHHHHHHHHH-------HHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717 431 YKEVGEYKKAVADCSKV-------LEQDDT-NVSVLVQRALLYESMEKYKLGAEDLRTVLK 483 (503)
Q Consensus 431 ylrLGdyeeALedaekA-------LkLdPd-~~kAlyrlA~Ay~~LGdyeeAle~LqkALk 483 (503)
.++.|+.++|++.++-+ +.+-|- ....-..++..++..++|.+|-..|.++..
T Consensus 137 ~Lk~Gd~~~A~e~LklAgvdv~~~~al~PL~qT~~~V~~A~~ll~~gkyyeA~~aLk~a~d 197 (209)
T PRK10316 137 KMAKGDKKGAMEELRLAGVGVMENQYLMPLKQTRNAVADAQKLLDKGKYYEANLALKGAED 197 (209)
T ss_pred HHHCCCHHHHHHHHHHcCcchhhHhHhcCchhhHHHHHHHHHHHhCCChhHHHHHHHhhcc
Confidence 89999999999888643 333442 345667789999999999999998887653
No 489
>PF12854 PPR_1: PPR repeat
Probab=35.97 E-value=73 Score=22.18 Aligned_cols=28 Identities=11% Similarity=-0.060 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010717 454 NVSVLVQRALLYESMEKYKLGAEDLRTV 481 (503)
Q Consensus 454 ~~kAlyrlA~Ay~~LGdyeeAle~LqkA 481 (503)
+...|-.+-..|.+.|+.++|++.|++.
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 4456777889999999999999999863
No 490
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=35.68 E-value=1.3e+02 Score=32.52 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 010717 381 GAAAKNKGVDNQKAGQYADAIKWLSWAVILL 411 (503)
Q Consensus 381 A~alk~lGn~~fkqGDY~eAIk~YeKALeL~ 411 (503)
+-.+...+...-+.++|++|+.+|+.|++++
T Consensus 10 aI~lv~kA~~eD~a~nY~eA~~lY~~aleYF 40 (439)
T KOG0739|consen 10 AIDLVKKAIDEDNAKNYEEALRLYQNALEYF 40 (439)
T ss_pred HHHHHHHHhhhcchhchHHHHHHHHHHHHHH
Confidence 3345555666667789999999999998764
No 491
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=35.44 E-value=70 Score=27.01 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=13.2
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 010717 433 EVGEYKKAVADCSKVLEQ 450 (503)
Q Consensus 433 rLGdyeeALedaekALkL 450 (503)
..|+|++|+..|.+++++
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 456778888888877765
No 492
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=35.05 E-value=4.8e+02 Score=34.86 Aligned_cols=67 Identities=15% Similarity=0.091 Sum_probs=60.8
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 010717 417 MATMMEVLSTRASCYKEVGEYKKAVADCSKVLEQDDTNVSVLVQRALLYESMEKYKLGAEDLRTVLKID 485 (503)
Q Consensus 417 dpd~A~aysNrAlcylrLGdyeeALedaekALkLdPd~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLD 485 (503)
.....++|...|.+....|+++.|-.++-+|.+.+ -++++..+|..+-..|+-..|+..+++.+.+.
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 45678899999999999999999999998888887 58899999999999999999999999999765
No 493
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.91 E-value=1.6e+02 Score=26.87 Aligned_cols=41 Identities=15% Similarity=0.137 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 010717 454 NVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARST 494 (503)
Q Consensus 454 ~~kAlyrlA~Ay~~LGdyeeAle~LqkALkLDPen~eAk~~ 494 (503)
.+-.|-.+|..|...|+-+.|++.|+.--.+.|+......-
T Consensus 71 pPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmDF 111 (121)
T COG4259 71 PPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMDF 111 (121)
T ss_pred CCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHHH
Confidence 45577778888888888888888888888888887554433
No 494
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=34.50 E-value=2.2e+02 Score=28.87 Aligned_cols=31 Identities=29% Similarity=0.335 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHhh
Q 010717 471 YKLGAEDLRTVLKI-----DPSNRIARSTIHRLTKM 501 (503)
Q Consensus 471 yeeAle~LqkALkL-----DPen~eAk~~La~Lqkl 501 (503)
.+.+++.+++.++. .|++.+....++.+.+.
T Consensus 241 l~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~ 276 (284)
T PF12805_consen 241 LKRALEALEESLEFLRQQDQPENREALLALRNLLDN 276 (284)
T ss_pred HHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence 34445555444433 56666666666555443
No 495
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=34.27 E-value=96 Score=28.45 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=14.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 010717 426 TRASCYKEVGEYKKAVADCSKVLEQDDT 453 (503)
Q Consensus 426 NrAlcylrLGdyeeALedaekALkLdPd 453 (503)
.+|..++..|++++|+.++-+||...|.
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 3455555555555555555555555543
No 496
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=34.21 E-value=95 Score=20.26 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=13.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010717 424 LSTRASCYKEVGEYKKAVADCSKVLE 449 (503)
Q Consensus 424 ysNrAlcylrLGdyeeALedaekALk 449 (503)
|..+-.++.+.|++++|++.+++..+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444555555555555555555443
No 497
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=34.14 E-value=1.4e+02 Score=31.50 Aligned_cols=30 Identities=13% Similarity=0.038 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 010717 455 VSVLVQRALLYESMEKYKLGAEDLRTVLKI 484 (503)
Q Consensus 455 ~kAlyrlA~Ay~~LGdyeeAle~LqkALkL 484 (503)
..++|+.|..+...+++-+|+.+|+.+++.
T Consensus 253 A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~ 282 (346)
T cd09247 253 ARSQLYLARRLKEAGHIGVAVGVLREALRN 282 (346)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 346777777777788888888888887763
No 498
>KOG2880 consensus SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain [Signal transduction mechanisms]
Probab=34.11 E-value=2.4e+02 Score=30.72 Aligned_cols=56 Identities=11% Similarity=0.058 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh-cCCChhhHHHHHHHHHHHHHcC
Q 010717 380 TGAAAKNKGVDNQKAGQYADAIKWLSWAVILLEK-SGDMATMMEVLSTRASCYKEVG 435 (503)
Q Consensus 380 ~A~alk~lGn~~fkqGDY~eAIk~YeKALeL~pk-~~ddpd~A~aysNrAlcylrLG 435 (503)
.......++++|...|+++.|.-+|.+-+.|+-+ .++.++...+-.+.=.++.++.
T Consensus 34 sg~ei~rmA~VY~~EgN~enafvLy~ry~tLfiEkipkHrDy~s~k~ek~d~~~klk 90 (424)
T KOG2880|consen 34 SGTEILRMANVYLEEGNVENAFVLYLRYITLFIEKIPKHRDYRSVKPEKEDIRKKLK 90 (424)
T ss_pred hhHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHhcccCcchhhhchhHHHHHHHHH
Confidence 3456677899999999999999999888776543 5555555544444444444444
No 499
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=33.92 E-value=2.4e+02 Score=24.80 Aligned_cols=80 Identities=15% Similarity=0.146 Sum_probs=41.5
Q ss_pred HHhCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH---------HHHcCCCCHHHHHHHH
Q 010717 392 QKAGQYADAIKWLSWAVILLEKSGDMATMMEVLSTRASCYKEVGEYKKAVADCSK---------VLEQDDTNVSVLVQRA 462 (503)
Q Consensus 392 fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~aysNrAlcylrLGdyeeALedaek---------ALkLdPd~~kAlyrlA 462 (503)
...+.....+.++++.+... .....++..+..+|.+. +..+.++.++. ++++.... +.+-...
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~------~~~~~~~~~li~ly~~~-~~~~ll~~l~~~~~~yd~~~~~~~c~~~-~l~~~~~ 89 (140)
T smart00299 18 EKRNLLEELIPYLESALKLN------SENPALQTKLIELYAKY-DPQKEIERLDNKSNHYDIEKVGKLCEKA-KLYEEAV 89 (140)
T ss_pred HhCCcHHHHHHHHHHHHccC------ccchhHHHHHHHHHHHH-CHHHHHHHHHhccccCCHHHHHHHHHHc-CcHHHHH
Confidence 34567788888888877541 23345666666666554 34555555552 22221110 0122234
Q ss_pred HHHHHcCCHHHHHHHHH
Q 010717 463 LLYESMEKYKLGAEDLR 479 (503)
Q Consensus 463 ~Ay~~LGdyeeAle~Lq 479 (503)
.+|...+++++|++.+-
T Consensus 90 ~l~~k~~~~~~Al~~~l 106 (140)
T smart00299 90 ELYKKDGNFKDAIVTLI 106 (140)
T ss_pred HHHHhhcCHHHHHHHHH
Confidence 45555666666666544
No 500
>PRK12798 chemotaxis protein; Reviewed
Probab=33.86 E-value=5.6e+02 Score=28.46 Aligned_cols=94 Identities=19% Similarity=0.060 Sum_probs=54.0
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhcCCChhhHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------------
Q 010717 388 GVDNQKAGQYADAIKWLSWAVILLEKSGDMATMME-VLSTRASCYKEVGEYKKAVADCSKVLEQDDTN------------ 454 (503)
Q Consensus 388 Gn~~fkqGDY~eAIk~YeKALeL~pk~~ddpd~A~-aysNrAlcylrLGdyeeALedaekALkLdPd~------------ 454 (503)
.-..+...|-.+|+++|.+|.-+.|-. ..-+ ++-.--.+..+.|+.++...+..+-+......
T Consensus 155 ~a~l~~~~dP~~Al~~lD~aRLlaPGT----LvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~ 230 (421)
T PRK12798 155 QGNLMVATDPATALKLLDQARLLAPGT----LVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVD 230 (421)
T ss_pred HHHHhcccCHHHHHHHHHHHHHhCCch----HHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence 344567889999999999997664411 1111 12212223356666666666555544332221
Q ss_pred --------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 010717 455 --------------------------VSVLVQRALLYESMEKYKLGAEDLRTVLKID 485 (503)
Q Consensus 455 --------------------------~kAlyrlA~Ay~~LGdyeeAle~LqkALkLD 485 (503)
...|++++..-.-.|+.+.|...-++++.|.
T Consensus 231 ~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 231 LVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred HHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 2345555666666677777777777777665
Done!