BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010719
         (503 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A7RNG8|CCD22_NEMVE Coiled-coil domain-containing protein 22 homolog OS=Nematostella
           vectensis GN=v1g180167 PE=3 SV=1
          Length = 644

 Score = 33.1 bits (74), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 17/184 (9%)

Query: 188 ITSSIQDLATAISKYQDEVLVKREELLQFAQ-----TAITGLKMNSDIERIDAEASDLKK 242
           I SS  D  + I          R E LQFAQ      A+ GL   S   ++D E    KK
Sbjct: 285 IVSSFSDRVSTIESQTQGSRFTRTEKLQFAQDEQKAAAMAGLS-ESGPPKMDTEEELQKK 343

Query: 243 RLEGMKALQN-----SSNEDLEQASEKTTKATIEALKEALAQIRV--CTRLEGLLLKKKL 295
           R + ++ALQN     +S+ D +++  KT  A ++   E +   +V      E   +KK+ 
Sbjct: 344 REQELEALQNKLKDLASSVDEKKSEIKTMNAGLQQTNEQVTATKVQNSEHEESYKVKKRT 403

Query: 296 LSYGDSPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQ-KEEALKVRVVKANESSEK 354
           +      E     + KL+ + +S S   V   ++   HR+   +E  +++V+ AN+ SE 
Sbjct: 404 VDLLPDAE---NNIAKLQGVVDSSSQRLVNLAQQWETHRTALIDEYRELKVINANKVSET 460

Query: 355 EKEI 358
           +K++
Sbjct: 461 QKKL 464


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.128    0.340 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166,574,868
Number of Sequences: 539616
Number of extensions: 6621418
Number of successful extensions: 34827
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 1750
Number of HSP's that attempted gapping in prelim test: 30188
Number of HSP's gapped (non-prelim): 4918
length of query: 503
length of database: 191,569,459
effective HSP length: 122
effective length of query: 381
effective length of database: 125,736,307
effective search space: 47905532967
effective search space used: 47905532967
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)