Query 010719
Match_columns 503
No_of_seqs 29 out of 31
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 03:47:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010719.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010719hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12128 DUF3584: Protein of u 95.7 4.6 9.9E-05 47.8 25.6 40 406-445 771-810 (1201)
2 KOG0996 Structural maintenance 93.1 11 0.00025 45.4 20.6 81 170-250 747-849 (1293)
3 COG3883 Uncharacterized protei 92.7 9.2 0.0002 39.2 17.2 154 226-401 50-217 (265)
4 PRK09039 hypothetical protein; 91.9 7.4 0.00016 40.3 15.7 60 359-421 136-195 (343)
5 PRK11637 AmiB activator; Provi 91.9 6.1 0.00013 41.3 15.2 17 409-425 117-133 (428)
6 TIGR02169 SMC_prok_A chromosom 91.4 30 0.00065 39.3 28.0 6 177-182 654-659 (1164)
7 PRK02224 chromosome segregatio 91.2 30 0.00066 39.0 30.5 13 300-312 468-480 (880)
8 COG1196 Smc Chromosome segrega 89.9 49 0.0011 39.4 25.4 65 181-248 251-315 (1163)
9 TIGR02169 SMC_prok_A chromosom 89.5 43 0.00094 38.1 27.1 20 229-248 675-694 (1164)
10 COG1196 Smc Chromosome segrega 89.3 55 0.0012 39.0 25.7 85 357-441 825-912 (1163)
11 KOG1853 LIS1-interacting prote 87.9 12 0.00025 39.0 13.1 106 353-491 45-150 (333)
12 TIGR00606 rad50 rad50. This fa 87.2 77 0.0017 38.2 26.9 91 360-451 836-927 (1311)
13 KOG0250 DNA repair protein RAD 87.0 80 0.0017 38.2 26.7 121 357-481 369-490 (1074)
14 KOG1029 Endocytic adaptor prot 87.0 74 0.0016 37.8 19.9 123 310-443 451-579 (1118)
15 PHA02562 46 endonuclease subun 86.0 51 0.0011 34.9 19.2 19 162-180 35-53 (562)
16 PF11932 DUF3450: Protein of u 85.1 20 0.00044 35.0 12.8 74 349-422 45-118 (251)
17 COG0419 SbcC ATPase involved i 84.5 85 0.0018 36.3 24.6 72 353-424 593-672 (908)
18 KOG1655 Protein involved in va 81.4 35 0.00077 34.3 12.7 155 218-439 18-184 (218)
19 PF10211 Ax_dynein_light: Axon 80.7 18 0.00039 34.7 10.3 148 231-412 31-187 (189)
20 PHA02562 46 endonuclease subun 80.2 86 0.0019 33.3 28.4 21 159-179 145-165 (562)
21 PRK10884 SH3 domain-containing 80.2 26 0.00057 34.3 11.4 79 357-442 90-168 (206)
22 PRK04863 mukB cell division pr 78.9 1.8E+02 0.004 36.4 26.9 71 165-240 192-284 (1486)
23 PF09726 Macoilin: Transmembra 78.2 1.1E+02 0.0025 35.1 17.1 34 364-397 542-575 (697)
24 PF14362 DUF4407: Domain of un 78.0 43 0.00092 33.4 12.3 49 328-378 112-160 (301)
25 PF15188 CCDC-167: Coiled-coil 77.7 16 0.00035 31.9 8.1 76 358-438 3-78 (85)
26 TIGR03185 DNA_S_dndD DNA sulfu 77.3 1.3E+02 0.0027 33.6 19.6 124 349-472 205-336 (650)
27 KOG0994 Extracellular matrix g 76.2 1.5E+02 0.0032 36.9 17.6 66 159-224 1504-1589(1758)
28 TIGR02168 SMC_prok_B chromosom 75.5 1.5E+02 0.0033 33.6 30.9 8 483-490 1012-1019(1179)
29 TIGR00606 rad50 rad50. This fa 74.9 2E+02 0.0044 34.8 30.4 24 225-248 789-812 (1311)
30 PF12128 DUF3584: Protein of u 74.9 2E+02 0.0043 34.7 30.5 183 309-498 731-926 (1201)
31 KOG0980 Actin-binding protein 74.8 2E+02 0.0043 34.6 22.0 58 222-281 375-437 (980)
32 PRK11281 hypothetical protein; 74.7 2.1E+02 0.0045 34.9 20.2 131 308-440 74-212 (1113)
33 PF04111 APG6: Autophagy prote 74.7 19 0.00041 37.1 9.1 34 351-384 55-88 (314)
34 PF03962 Mnd1: Mnd1 family; I 74.5 80 0.0017 30.4 12.8 66 310-380 65-130 (188)
35 PF10146 zf-C4H2: Zinc finger- 74.4 29 0.00063 34.7 10.0 68 354-421 33-103 (230)
36 PF10458 Val_tRNA-synt_C: Valy 73.6 6.1 0.00013 31.7 4.3 51 357-407 1-55 (66)
37 PF07106 TBPIP: Tat binding pr 73.4 24 0.00052 32.5 8.7 30 416-445 112-141 (169)
38 PRK04863 mukB cell division pr 73.3 2.5E+02 0.0055 35.2 21.7 63 163-232 149-215 (1486)
39 KOG0963 Transcription factor/C 73.2 1.8E+02 0.0039 33.5 20.7 115 268-386 145-275 (629)
40 PF10168 Nup88: Nuclear pore c 73.1 1.3E+02 0.0027 34.8 15.8 38 414-451 633-670 (717)
41 PF06428 Sec2p: GDP/GTP exchan 72.9 18 0.0004 32.1 7.4 51 362-412 10-61 (100)
42 TIGR01843 type_I_hlyD type I s 72.3 1E+02 0.0022 31.0 13.5 29 361-389 204-232 (423)
43 PRK03918 chromosome segregatio 72.1 1.8E+02 0.0038 32.9 21.7 70 373-442 618-695 (880)
44 smart00338 BRLZ basic region l 71.9 14 0.0003 29.3 5.9 46 337-382 14-62 (65)
45 TIGR02680 conserved hypothetic 71.8 2.5E+02 0.0054 34.5 23.2 22 227-248 755-776 (1353)
46 PF11559 ADIP: Afadin- and alp 71.5 57 0.0012 29.5 10.5 72 351-440 57-128 (151)
47 COG4942 Membrane-bound metallo 70.9 1.7E+02 0.0037 32.2 16.7 92 306-398 160-255 (420)
48 KOG0161 Myosin class II heavy 70.8 1.6E+02 0.0036 37.8 17.1 78 346-423 1041-1118(1930)
49 PF06008 Laminin_I: Laminin Do 70.1 1.2E+02 0.0025 30.0 20.8 61 178-248 12-72 (264)
50 PF03962 Mnd1: Mnd1 family; I 70.1 95 0.0021 29.9 12.1 22 455-476 145-166 (188)
51 PRK03918 chromosome segregatio 70.0 2E+02 0.0042 32.5 21.7 47 357-403 197-243 (880)
52 cd07624 BAR_SNX7_30 The Bin/Am 69.2 1.1E+02 0.0024 29.3 18.6 156 307-484 18-192 (200)
53 PF09726 Macoilin: Transmembra 69.1 83 0.0018 36.2 13.3 87 351-441 490-601 (697)
54 COG1579 Zn-ribbon protein, pos 68.5 1.4E+02 0.0031 30.3 17.6 35 447-481 178-217 (239)
55 PF09177 Syntaxin-6_N: Syntaxi 67.7 55 0.0012 27.9 9.0 88 316-412 7-97 (97)
56 PF08317 Spc7: Spc7 kinetochor 67.0 1.6E+02 0.0034 30.3 14.6 53 153-219 59-111 (325)
57 PF12718 Tropomyosin_1: Tropom 66.8 1.1E+02 0.0024 28.4 11.6 86 356-441 31-122 (143)
58 PRK00106 hypothetical protein; 66.5 2.3E+02 0.0049 31.9 15.7 18 363-380 79-96 (535)
59 PF10455 BAR_2: Bin/amphiphysi 65.8 71 0.0015 33.2 11.0 76 373-486 180-256 (289)
60 PRK12704 phosphodiesterase; Pr 65.4 1.7E+02 0.0037 32.4 14.4 11 456-466 162-172 (520)
61 PRK09039 hypothetical protein; 64.5 1.9E+02 0.0041 30.3 15.1 86 337-423 65-154 (343)
62 PF04111 APG6: Autophagy prote 64.4 1.2E+02 0.0025 31.4 12.3 55 347-401 37-91 (314)
63 PF09744 Jnk-SapK_ap_N: JNK_SA 64.3 1.3E+02 0.0028 28.7 11.5 78 339-416 68-149 (158)
64 PF11068 YlqD: YlqD protein; 64.3 67 0.0015 29.7 9.5 61 353-413 20-85 (131)
65 PF10168 Nup88: Nuclear pore c 63.1 2.1E+02 0.0046 33.1 15.0 74 316-390 588-669 (717)
66 TIGR01069 mutS2 MutS2 family p 62.5 52 0.0011 37.9 10.2 66 355-420 510-575 (771)
67 PF05546 She9_MDM33: She9 / Md 62.4 1.8E+02 0.0039 29.3 13.5 113 359-493 31-153 (207)
68 PF05911 DUF869: Plant protein 61.6 3.3E+02 0.0071 32.1 19.3 163 216-445 11-173 (769)
69 PF09304 Cortex-I_coil: Cortex 61.5 50 0.0011 30.1 7.9 49 359-425 29-77 (107)
70 PRK10884 SH3 domain-containing 60.6 1.2E+02 0.0025 29.9 11.0 8 327-334 99-106 (206)
71 TIGR01000 bacteriocin_acc bact 60.6 1.3E+02 0.0029 31.8 12.2 6 229-234 112-117 (457)
72 PF07798 DUF1640: Protein of u 60.4 1.5E+02 0.0033 27.9 13.5 69 360-428 73-153 (177)
73 TIGR03185 DNA_S_dndD DNA sulfu 60.0 2.9E+02 0.0062 30.9 24.7 76 308-383 210-285 (650)
74 KOG0018 Structural maintenance 59.8 3.1E+02 0.0067 33.7 15.8 74 319-392 400-476 (1141)
75 TIGR03752 conj_TIGR03752 integ 59.4 53 0.0012 36.4 9.2 88 298-391 53-140 (472)
76 PRK10929 putative mechanosensi 58.7 4.2E+02 0.0092 32.5 21.4 159 239-440 27-193 (1109)
77 PRK02224 chromosome segregatio 58.3 3.3E+02 0.0071 31.0 31.5 20 157-176 142-161 (880)
78 PRK00409 recombination and DNA 58.2 90 0.0019 36.1 11.1 46 365-410 525-570 (782)
79 PF01025 GrpE: GrpE; InterPro 57.5 28 0.0006 31.5 5.8 34 355-388 13-46 (165)
80 PRK11637 AmiB activator; Provi 56.5 2.7E+02 0.0058 29.4 24.4 45 353-397 184-228 (428)
81 PRK14143 heat shock protein Gr 56.0 1.3E+02 0.0028 30.4 10.7 81 357-437 64-149 (238)
82 PRK14151 heat shock protein Gr 55.0 1.9E+02 0.0041 27.9 11.1 84 355-440 22-105 (176)
83 PRK00409 recombination and DNA 55.0 80 0.0017 36.5 10.1 65 350-424 531-595 (782)
84 KOG0161 Myosin class II heavy 54.7 6.1E+02 0.013 33.1 27.2 108 356-465 932-1043(1930)
85 TIGR02680 conserved hypothetic 54.3 5.1E+02 0.011 32.0 21.6 44 355-398 923-966 (1353)
86 PRK14127 cell division protein 53.8 22 0.00048 32.1 4.4 60 337-396 14-73 (109)
87 PF12455 Dynactin: Dynein asso 53.8 63 0.0014 32.7 8.1 70 400-477 120-204 (274)
88 TIGR01005 eps_transp_fam exopo 53.2 3.8E+02 0.0082 30.2 15.5 22 360-381 288-309 (754)
89 PRK14154 heat shock protein Gr 53.1 2E+02 0.0044 28.7 11.3 70 357-428 56-125 (208)
90 PF04156 IncA: IncA protein; 53.0 1.9E+02 0.0041 26.7 14.3 29 357-385 92-120 (191)
91 PF13600 DUF4140: N-terminal d 52.7 31 0.00068 29.2 5.0 34 359-392 69-102 (104)
92 TIGR02231 conserved hypothetic 52.5 1.4E+02 0.003 32.3 10.9 36 358-393 69-104 (525)
93 COG1579 Zn-ribbon protein, pos 51.2 2.9E+02 0.0062 28.2 13.2 31 361-391 118-148 (239)
94 PRK12704 phosphodiesterase; Pr 50.9 2.1E+02 0.0045 31.7 12.1 23 453-475 178-200 (520)
95 TIGR03319 YmdA_YtgF conserved 50.7 2.2E+02 0.0047 31.6 12.1 20 454-473 173-192 (514)
96 COG2433 Uncharacterized conser 50.3 1.6E+02 0.0034 34.0 11.1 88 353-448 429-516 (652)
97 cd07605 I-BAR_IMD Inverse (I)- 49.8 1.3E+02 0.0028 30.1 9.4 29 173-201 65-93 (223)
98 PF07106 TBPIP: Tat binding pr 49.6 95 0.0021 28.6 8.0 32 357-388 83-114 (169)
99 KOG3759 Uncharacterized RUN do 49.6 34 0.00073 38.2 5.8 70 363-442 177-249 (621)
100 PF10473 CENP-F_leu_zip: Leuci 49.5 1.7E+02 0.0037 27.6 9.6 51 372-426 57-107 (140)
101 PF12889 DUF3829: Protein of u 49.1 1E+02 0.0022 29.6 8.4 75 178-252 109-209 (276)
102 cd07637 BAR_ACAP3 The Bin/Amph 48.6 2.5E+02 0.0055 27.5 11.1 88 360-461 2-92 (200)
103 PF07926 TPR_MLP1_2: TPR/MLP1/ 48.5 2.1E+02 0.0045 25.8 15.7 110 356-472 6-118 (132)
104 KOG0977 Nuclear envelope prote 48.5 1.1E+02 0.0023 34.6 9.5 71 360-441 99-169 (546)
105 PF09730 BicD: Microtubule-ass 48.2 5.2E+02 0.011 30.4 17.1 128 351-480 255-412 (717)
106 PF04012 PspA_IM30: PspA/IM30 47.8 2.5E+02 0.0055 26.7 14.2 83 319-401 56-139 (221)
107 COG4942 Membrane-bound metallo 46.8 80 0.0017 34.6 8.0 53 350-402 63-116 (420)
108 COG4026 Uncharacterized protei 46.4 1.2E+02 0.0026 31.4 8.7 67 355-421 137-206 (290)
109 PF00170 bZIP_1: bZIP transcri 45.9 83 0.0018 24.8 6.1 52 325-379 5-59 (64)
110 PF11932 DUF3450: Protein of u 45.6 1.3E+02 0.0029 29.5 8.7 34 355-388 37-70 (251)
111 TIGR01069 mutS2 MutS2 family p 45.2 1.9E+02 0.0041 33.5 11.1 18 406-423 572-589 (771)
112 PF05082 Rop-like: Rop-like; 45.0 33 0.00072 28.8 3.8 28 369-396 4-31 (66)
113 PRK09465 tolC outer membrane c 44.8 2.7E+02 0.0059 28.3 11.1 84 351-437 333-416 (446)
114 TIGR03752 conj_TIGR03752 integ 44.7 1.1E+02 0.0024 34.0 8.8 33 351-383 107-139 (472)
115 PF11471 Sugarporin_N: Maltopo 42.9 44 0.00095 27.3 4.2 28 365-392 30-57 (60)
116 PF07926 TPR_MLP1_2: TPR/MLP1/ 42.7 2.5E+02 0.0055 25.2 13.2 83 311-394 11-93 (132)
117 PF12325 TMF_TATA_bd: TATA ele 41.9 2.6E+02 0.0056 25.7 9.3 24 359-382 36-59 (120)
118 PF10191 COG7: Golgi complex c 41.5 6.3E+02 0.014 29.4 20.5 220 214-487 55-295 (766)
119 smart00787 Spc7 Spc7 kinetocho 41.2 4.4E+02 0.0096 27.5 16.6 39 170-215 64-102 (312)
120 PF12325 TMF_TATA_bd: TATA ele 40.9 2.2E+02 0.0048 26.0 8.8 43 358-400 21-63 (120)
121 PRK14162 heat shock protein Gr 40.5 2.5E+02 0.0055 27.6 9.7 67 358-426 44-110 (194)
122 PF04912 Dynamitin: Dynamitin 40.4 4.6E+02 0.01 27.5 19.2 54 230-285 96-149 (388)
123 PF05278 PEARLI-4: Arabidopsis 40.2 1.2E+02 0.0027 31.4 7.9 55 359-417 206-260 (269)
124 PF15456 Uds1: Up-regulated Du 40.1 2.2E+02 0.0047 26.2 8.6 100 339-456 12-111 (124)
125 KOG0239 Kinesin (KAR3 subfamil 40.0 6.5E+02 0.014 29.2 15.5 78 354-439 169-246 (670)
126 PRK11281 hypothetical protein; 39.8 8.1E+02 0.017 30.2 22.2 34 403-436 217-250 (1113)
127 PF00038 Filament: Intermediat 39.8 3.9E+02 0.0084 26.5 15.8 128 313-440 7-137 (312)
128 PF05103 DivIVA: DivIVA protei 39.5 18 0.0004 31.2 1.7 58 337-394 9-66 (131)
129 PF05667 DUF812: Protein of un 39.3 6.3E+02 0.014 28.8 24.0 90 347-454 448-537 (594)
130 PF05266 DUF724: Protein of un 39.0 3.8E+02 0.0082 26.2 10.9 23 406-428 159-181 (190)
131 PRK03947 prefoldin subunit alp 38.4 2.9E+02 0.0063 24.7 11.3 92 304-395 10-136 (140)
132 PF04156 IncA: IncA protein; 37.1 3.4E+02 0.0074 25.1 15.1 70 356-429 77-146 (191)
133 PRK06569 F0F1 ATP synthase sub 36.6 3.9E+02 0.0085 25.6 12.1 66 356-424 44-110 (155)
134 TIGR01843 type_I_hlyD type I s 36.4 4.6E+02 0.01 26.4 17.1 37 359-395 143-179 (423)
135 KOG0288 WD40 repeat protein Ti 36.3 99 0.0021 34.2 6.7 67 363-433 2-68 (459)
136 PF06920 Ded_cyto: Dedicator o 35.1 21 0.00046 33.4 1.4 54 129-191 100-156 (178)
137 PRK06800 fliH flagellar assemb 35.0 4.1E+02 0.0089 27.0 10.2 82 353-441 31-113 (228)
138 PRK11578 macrolide transporter 34.7 2.6E+02 0.0056 28.6 9.2 28 360-387 99-126 (370)
139 PRK14158 heat shock protein Gr 34.5 4.6E+02 0.01 25.9 11.7 69 356-426 43-111 (194)
140 KOG0977 Nuclear envelope prote 34.1 7.6E+02 0.017 28.2 15.0 30 311-340 96-125 (546)
141 PF07426 Dynactin_p22: Dynacti 34.1 1.2E+02 0.0026 29.2 6.2 46 359-404 4-60 (174)
142 PF06657 Cep57_MT_bd: Centroso 33.9 1.8E+02 0.004 24.6 6.7 62 350-420 14-75 (79)
143 PF13805 Pil1: Eisosome compon 33.5 4E+02 0.0086 27.8 10.2 136 302-468 116-262 (271)
144 PF08657 DASH_Spc34: DASH comp 33.5 1.6E+02 0.0035 30.1 7.4 58 281-345 161-218 (259)
145 cd00890 Prefoldin Prefoldin is 32.4 1.6E+02 0.0035 25.2 6.3 36 355-390 89-124 (129)
146 TIGR02231 conserved hypothetic 32.3 2.9E+02 0.0063 29.9 9.5 46 350-395 128-173 (525)
147 PHA03093 EEV glycoprotein; Pro 32.2 21 0.00047 35.1 1.0 14 430-443 138-152 (185)
148 PF13747 DUF4164: Domain of un 32.1 3.4E+02 0.0073 23.5 9.0 48 328-379 11-58 (89)
149 PF08614 ATG16: Autophagy prot 32.0 1.8E+02 0.0039 27.6 7.1 43 356-398 133-175 (194)
150 PF10123 Mu-like_Pro: Mu-like 31.7 3.3E+02 0.0071 28.0 9.3 52 351-402 211-264 (326)
151 PRK10361 DNA recombination pro 31.7 7.8E+02 0.017 27.6 15.3 12 482-493 141-152 (475)
152 PF03961 DUF342: Protein of un 31.6 2.3E+02 0.0049 30.2 8.5 70 352-421 325-408 (451)
153 PRK14145 heat shock protein Gr 31.3 4.9E+02 0.011 25.8 10.0 67 356-424 48-114 (196)
154 PRK10132 hypothetical protein; 31.3 3.2E+02 0.0068 24.7 8.1 17 378-394 49-65 (108)
155 PRK01156 chromosome segregatio 31.0 8.7E+02 0.019 28.0 16.3 178 307-500 305-495 (895)
156 PRK12705 hypothetical protein; 30.8 8.1E+02 0.018 27.6 12.8 109 321-429 52-170 (508)
157 KOG4302 Microtubule-associated 30.8 7.3E+02 0.016 29.0 12.6 108 304-411 51-190 (660)
158 COG1730 GIM5 Predicted prefold 30.5 1.4E+02 0.003 28.3 5.9 50 337-386 92-141 (145)
159 PF05276 SH3BP5: SH3 domain-bi 30.3 6E+02 0.013 25.9 12.4 56 369-428 151-206 (239)
160 PF06637 PV-1: PV-1 protein (P 30.1 5.7E+02 0.012 28.4 11.0 32 406-437 360-391 (442)
161 PF12777 MT: Microtubule-bindi 29.6 2.4E+02 0.0053 29.1 8.1 61 348-408 244-304 (344)
162 PF13747 DUF4164: Domain of un 28.9 3.8E+02 0.0083 23.2 8.3 45 349-393 35-79 (89)
163 PF08311 Mad3_BUB1_I: Mad3/BUB 28.9 37 0.0008 30.3 1.9 56 414-471 4-59 (126)
164 PF14197 Cep57_CLD_2: Centroso 28.9 3.4E+02 0.0075 22.6 8.4 63 365-427 3-68 (69)
165 PF01920 Prefoldin_2: Prefoldi 28.9 1.6E+02 0.0036 24.3 5.6 38 352-389 61-98 (106)
166 smart00787 Spc7 Spc7 kinetocho 28.8 6.9E+02 0.015 26.1 11.6 31 359-389 217-247 (312)
167 PRK14155 heat shock protein Gr 28.7 6E+02 0.013 25.3 10.4 71 355-427 15-85 (208)
168 PF01920 Prefoldin_2: Prefoldi 28.5 2.2E+02 0.0048 23.5 6.3 32 354-385 70-101 (106)
169 PF02403 Seryl_tRNA_N: Seryl-t 28.0 2.4E+02 0.0053 24.0 6.6 14 365-378 79-92 (108)
170 PF12777 MT: Microtubule-bindi 27.9 4E+02 0.0087 27.6 9.3 78 313-394 25-102 (344)
171 PF15070 GOLGA2L5: Putative go 27.6 9.9E+02 0.021 27.5 19.2 54 323-378 52-105 (617)
172 PF02996 Prefoldin: Prefoldin 27.5 1E+02 0.0023 26.2 4.3 42 338-379 76-117 (120)
173 COG0525 ValS Valyl-tRNA synthe 26.9 1E+02 0.0022 36.7 5.3 51 356-406 810-864 (877)
174 PF05529 Bap31: B-cell recepto 26.9 2.6E+02 0.0057 26.2 7.2 19 176-194 22-40 (192)
175 PF08614 ATG16: Autophagy prot 26.8 5.6E+02 0.012 24.4 9.5 19 326-344 72-90 (194)
176 KOG4643 Uncharacterized coiled 26.7 1.3E+03 0.029 28.7 27.9 16 192-207 224-239 (1195)
177 PF05384 DegS: Sensor protein 26.5 4.6E+02 0.01 25.2 8.7 71 356-426 37-118 (159)
178 TIGR02449 conserved hypothetic 26.2 4E+02 0.0086 22.4 7.3 46 361-406 1-46 (65)
179 TIGR02492 flgK_ends flagellar 26.1 1.3E+02 0.0029 30.6 5.5 40 349-388 148-187 (322)
180 TIGR01005 eps_transp_fam exopo 25.8 1E+03 0.022 27.0 15.0 17 406-422 288-304 (754)
181 PF02181 FH2: Formin Homology 25.4 2.3E+02 0.0051 28.8 7.0 77 349-429 263-339 (370)
182 KOG0250 DNA repair protein RAD 25.3 1.4E+03 0.03 28.4 19.8 70 357-426 738-807 (1074)
183 PF11180 DUF2968: Protein of u 25.3 6.2E+02 0.014 25.4 9.6 54 343-396 75-134 (192)
184 PF02388 FemAB: FemAB family; 24.8 3.1E+02 0.0068 29.0 8.0 30 351-380 240-269 (406)
185 PF15186 TEX13: Testis-express 24.8 1.9E+02 0.0042 28.0 5.8 104 293-400 20-143 (152)
186 PF05524 PEP-utilisers_N: PEP- 24.7 4.6E+02 0.01 22.7 8.8 66 392-460 32-97 (123)
187 PF07889 DUF1664: Protein of u 24.7 5.5E+02 0.012 23.9 8.6 65 351-419 59-123 (126)
188 TIGR01147 V_ATP_synt_G vacuola 24.6 2.2E+02 0.0049 25.9 6.0 55 307-368 28-87 (113)
189 KOG4460 Nuclear pore complex, 24.3 2.6E+02 0.0057 32.3 7.6 65 411-483 593-664 (741)
190 PRK00106 hypothetical protein; 24.2 1E+03 0.022 27.0 12.1 19 455-473 195-213 (535)
191 PF04977 DivIC: Septum formati 24.1 2.3E+02 0.005 22.3 5.4 28 352-379 23-50 (80)
192 PRK10203 hypothetical protein; 24.1 4.6E+02 0.01 24.3 8.0 71 341-411 45-119 (122)
193 KOG0244 Kinesin-like protein [ 24.1 6.6E+02 0.014 30.5 11.0 93 357-456 513-609 (913)
194 PF13863 DUF4200: Domain of un 24.0 4.7E+02 0.01 22.6 13.7 61 334-394 6-66 (126)
195 KOG0995 Centromere-associated 23.9 1.2E+03 0.025 27.1 22.6 42 423-464 488-529 (581)
196 PF13514 AAA_27: AAA domain 23.8 1.3E+03 0.029 27.7 25.6 85 409-497 899-992 (1111)
197 PRK09343 prefoldin subunit bet 23.6 2E+02 0.0043 25.9 5.5 30 360-389 85-114 (121)
198 COG5509 Uncharacterized small 23.5 1.5E+02 0.0033 25.0 4.3 33 357-389 29-61 (65)
199 PTZ00419 valyl-tRNA synthetase 23.5 1.2E+02 0.0026 35.8 5.1 46 357-402 926-975 (995)
200 PF03670 UPF0184: Uncharacteri 23.4 3.3E+02 0.0072 24.0 6.5 43 360-402 26-72 (83)
201 PF02403 Seryl_tRNA_N: Seryl-t 23.3 4.7E+02 0.01 22.3 7.9 46 330-383 7-52 (108)
202 PF12329 TMF_DNA_bd: TATA elem 23.3 2.4E+02 0.0052 23.6 5.5 36 356-391 36-71 (74)
203 KOG0709 CREB/ATF family transc 23.2 1.8E+02 0.0038 32.5 5.9 62 324-385 243-318 (472)
204 KOG4360 Uncharacterized coiled 23.1 3.8E+02 0.0082 30.7 8.5 114 306-427 222-364 (596)
205 PF10473 CENP-F_leu_zip: Leuci 23.1 6.5E+02 0.014 23.8 16.4 132 347-497 4-135 (140)
206 PRK11115 transcriptional regul 23.1 6.4E+02 0.014 23.8 13.1 25 456-480 94-118 (236)
207 PF00261 Tropomyosin: Tropomyo 23.0 7.3E+02 0.016 24.4 18.2 123 319-441 83-211 (237)
208 COG3937 Uncharacterized conser 23.0 75 0.0016 29.1 2.7 22 357-378 87-108 (108)
209 PF01442 Apolipoprotein: Apoli 22.8 5.2E+02 0.011 22.6 19.7 26 458-483 150-175 (202)
210 PF13514 AAA_27: AAA domain 22.6 1.4E+03 0.03 27.5 26.9 59 410-474 937-995 (1111)
211 PF11559 ADIP: Afadin- and alp 22.5 5.8E+02 0.013 23.0 10.1 56 332-391 49-104 (151)
212 PRK13729 conjugal transfer pil 22.4 2.7E+02 0.0058 31.2 7.2 12 367-378 97-108 (475)
213 PF04871 Uso1_p115_C: Uso1 / p 22.3 6.2E+02 0.014 23.4 13.6 57 355-411 10-67 (136)
214 PF10226 DUF2216: Uncharacteri 22.3 8.2E+02 0.018 24.7 11.4 55 432-494 74-128 (195)
215 PF05164 ZapA: Cell division p 22.3 4E+02 0.0086 21.5 6.6 50 405-454 24-73 (89)
216 PF06637 PV-1: PV-1 protein (P 22.1 6.5E+02 0.014 28.0 9.7 84 306-389 277-378 (442)
217 COG3883 Uncharacterized protei 22.0 5.4E+02 0.012 26.8 8.8 140 323-469 33-179 (265)
218 PF13600 DUF4140: N-terminal d 22.0 1.7E+02 0.0036 24.8 4.5 34 351-384 68-101 (104)
219 PF06428 Sec2p: GDP/GTP exchan 21.8 4.4E+02 0.0096 23.5 7.2 52 366-426 7-64 (100)
220 PF06698 DUF1192: Protein of u 21.8 2.4E+02 0.0051 23.3 5.1 33 362-394 23-55 (59)
221 PRK10636 putative ABC transpor 21.7 3.4E+02 0.0074 30.3 8.0 30 356-385 559-588 (638)
222 PRK11377 dihydroxyacetone kina 21.7 6.1E+02 0.013 28.0 9.7 14 125-140 65-78 (473)
223 PRK13455 F0F1 ATP synthase sub 21.7 5.5E+02 0.012 24.1 8.3 58 365-422 56-113 (184)
224 TIGR00998 8a0101 efflux pump m 21.6 3.9E+02 0.0085 26.4 7.6 25 371-395 105-129 (334)
225 COG5185 HEC1 Protein involved 21.6 2.9E+02 0.0063 31.4 7.2 73 359-442 343-415 (622)
226 PRK15347 two component system 21.5 1.2E+03 0.025 26.2 13.1 56 345-400 346-401 (921)
227 PRK05729 valS valyl-tRNA synth 21.4 1.4E+02 0.003 34.6 5.1 29 357-385 808-836 (874)
228 cd00686 Terpene_cyclase_cis_tr 21.3 49 0.0011 35.5 1.4 29 467-495 219-249 (357)
229 PF04799 Fzo_mitofusin: fzo-li 21.2 4.3E+02 0.0093 26.0 7.5 32 348-379 115-146 (171)
230 PF13166 AAA_13: AAA domain 21.2 1.1E+03 0.025 26.0 19.7 41 360-400 424-464 (712)
231 cd07610 FCH_F-BAR The Extended 21.2 6.2E+02 0.014 22.9 20.3 62 436-498 129-190 (191)
232 cd03407 Band_7_4 A subgroup of 21.2 3.9E+02 0.0084 26.3 7.4 24 71-94 216-239 (262)
233 CHL00019 atpF ATP synthase CF0 21.2 6.9E+02 0.015 23.5 8.8 34 357-390 59-92 (184)
234 TIGR00293 prefoldin, archaeal 21.2 2.8E+02 0.0062 24.1 5.9 40 351-390 84-123 (126)
235 PF14661 HAUS6_N: HAUS augmin- 21.1 6.3E+02 0.014 25.1 8.8 101 315-422 142-247 (247)
236 PF03836 RasGAP_C: RasGAP C-te 20.8 33 0.00071 31.3 0.0 86 329-416 8-93 (142)
237 TIGR03017 EpsF chain length de 20.6 9.7E+02 0.021 24.9 13.6 135 328-481 215-367 (444)
238 TIGR03319 YmdA_YtgF conserved 20.5 1.2E+03 0.026 26.0 13.8 7 483-489 188-194 (514)
239 PF05400 FliT: Flagellar prote 20.4 4.3E+02 0.0093 20.7 7.3 70 360-434 11-83 (84)
240 PRK14164 heat shock protein Gr 20.4 8.9E+02 0.019 24.4 10.1 63 360-424 77-139 (218)
241 PF14265 DUF4355: Domain of un 20.3 5.3E+02 0.012 22.5 7.4 35 347-382 37-71 (125)
242 PRK14150 heat shock protein Gr 20.3 8.2E+02 0.018 23.9 10.0 46 391-436 74-119 (193)
243 PF09236 AHSP: Alpha-haemoglob 20.3 3.1E+02 0.0068 24.5 5.8 50 429-481 34-83 (89)
244 KOG3119 Basic region leucine z 20.3 2.3E+02 0.005 28.8 5.8 49 327-385 206-254 (269)
245 COG1340 Uncharacterized archae 20.2 1.1E+03 0.023 25.2 16.8 126 298-436 105-237 (294)
246 PF11126 Phage_DsbA: Transcrip 20.1 75 0.0016 27.2 1.9 36 369-410 27-62 (69)
247 PRK14158 heat shock protein Gr 20.1 2E+02 0.0043 28.4 5.1 60 336-395 10-75 (194)
248 PF11853 DUF3373: Protein of u 20.1 98 0.0021 34.5 3.4 22 361-382 32-53 (489)
249 COG1340 Uncharacterized archae 20.0 7.6E+02 0.016 26.2 9.5 28 373-400 75-102 (294)
No 1
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.67 E-value=4.6 Score=47.83 Aligned_cols=40 Identities=15% Similarity=0.352 Sum_probs=38.1
Q ss_pred HHHHHhhhchhHHHHHHhhhhhhhhHHHHHHHhhHhhHHH
Q 010719 406 QIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVL 445 (503)
Q Consensus 406 qIv~hLk~KedELsksi~sc~vEA~vv~tWinFLedtW~l 445 (503)
..|..|+.+...|.+.|..|+....-|.-|=.|+...|.-
T Consensus 771 ~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~ 810 (1201)
T PF12128_consen 771 ERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDK 810 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3999999999999999999999999999999999999975
No 2
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.07 E-value=11 Score=45.35 Aligned_cols=81 Identities=27% Similarity=0.431 Sum_probs=46.4
Q ss_pred HHHHHHhhhcCcHHH-----HHHH-H-----HhHHHHHHHhccchhhhccChHHHHHH------HHHhhhcc-----Ccc
Q 010719 170 LLEMFGLCLTGGKEV-----HHAI-T-----SSIQDLATAISKYQDEVLVKREELLQF------AQTAITGL-----KMN 227 (503)
Q Consensus 170 LlEiFglcL~GGkeV-----h~ai-v-----ssiqdLA~afs~y~DEvLvkReELlq~------aq~AisGL-----K~n 227 (503)
|+|.-|.--+||+.| .+.+ | .+++.+..+++.-.|..=+.++++.+. ....|--| +.-
T Consensus 747 lIe~SGtmtGGG~~v~~g~mg~~~~~t~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~ 826 (1293)
T KOG0996|consen 747 LIEKSGTMTGGGKKVKGGRMGTSIRVTGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLT 826 (1293)
T ss_pred eecccccccCCCCcCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHH
Confidence 345555555566665 3334 2 377888888888777544444444221 12222222 456
Q ss_pred hhhhhhhhHHHHHHHHHhHHhhh
Q 010719 228 SDIERIDAEASDLKKRLEGMKAL 250 (503)
Q Consensus 228 AdiariD~Ea~~L~~kl~~~~~~ 250 (503)
+++-|++.+...|.+.|-+..+.
T Consensus 827 ~~~k~~~~~~~~l~~~i~~~E~~ 849 (1293)
T KOG0996|consen 827 ASVKRLAELIEYLESQIAELEAA 849 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777766643
No 3
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.73 E-value=9.2 Score=39.21 Aligned_cols=154 Identities=19% Similarity=0.337 Sum_probs=91.3
Q ss_pred cchhhhhhhhHHHHHHHHHhHHhhhccCCchhhhhhhhhhhHHHHHHHHHHHHH------HHHHh-----hh---hhhhh
Q 010719 226 MNSDIERIDAEASDLKKRLEGMKALQNSSNEDLEQASEKTTKATIEALKEALAQ------IRVCT-----RL---EGLLL 291 (503)
Q Consensus 226 ~nAdiariD~Ea~~L~~kl~~~~~~~~~s~~~~~~~~e~t~~a~~ea~k~al~q------iRlcS-----~l---E~lll 291 (503)
+-.+|.+||+.+.++++|++..+.--.++...-.+-. .=|+.+++-+.+ =|+.+ .- =+.+|
T Consensus 50 ~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~-----~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil 124 (265)
T COG3883 50 IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQ-----KEIAELKENIVERQELLKKRARAMQVNGTATSYIDVIL 124 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 5678899999999999888887732211111111111 013333322221 11111 00 01223
Q ss_pred hhhhccCCCChhhHHHHhhHHHHHHHHhhhchHHHhHhhhhhhhhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHH
Q 010719 292 KKKLLSYGDSPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDH 371 (503)
Q Consensus 292 kkk~~~~Gdspe~ha~kvdkLkvlsEsLanS~skAEkrI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~Lekqrde 371 (503)
..|+++ ..++++-++ +.+.++++-|+++--..+..|+- |..-+...-..|.+=+.+||.+.+.
T Consensus 125 ~SkSfs---------D~IsRvtAi-----~~iv~aDk~ile~qk~dk~~Le~---kq~~l~~~~e~l~al~~e~e~~~~~ 187 (265)
T COG3883 125 NSKSFS---------DLISRVTAI-----SVIVDADKKILEQQKEDKKSLEE---KQAALEDKLETLVALQNELETQLNS 187 (265)
T ss_pred ccCcHH---------HHHHHHHHH-----HHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333 566776663 45789999999986666555542 3333444445566667778888888
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 010719 372 LEAELKKVNLSLAAAQARLRNAQEEREQFD 401 (503)
Q Consensus 372 LEAeLkkVn~sL~aA~aRl~~~rEERdqFd 401 (503)
|+.+....|..+.++.++...+.+|...-.
T Consensus 188 L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 188 LNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 888888888888888888888888876554
No 4
>PRK09039 hypothetical protein; Validated
Probab=91.90 E-value=7.4 Score=40.34 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=44.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHH
Q 010719 359 GAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKS 421 (503)
Q Consensus 359 ~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsks 421 (503)
-.+|..|..|.+.|++||..++..|.++..+. ++-+.++++--..|-.+|..|..||.+-
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~---~~~~~~i~~L~~~L~~a~~~~~~~l~~~ 195 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALEAALDASEKRD---RESQAKIADLGRRLNVALAQRVQELNRY 195 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34577888888888888888888888888887 5556666666666777776677777654
No 5
>PRK11637 AmiB activator; Provisional
Probab=91.87 E-value=6.1 Score=41.30 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=7.6
Q ss_pred HHhhhchhHHHHHHhhh
Q 010719 409 EHLKTKEDELLKSIAAC 425 (503)
Q Consensus 409 ~hLk~KedELsksi~sc 425 (503)
..|....+.|.+.+++.
T Consensus 117 ~~l~~~~~~l~~rlra~ 133 (428)
T PRK11637 117 QQQAAQERLLAAQLDAA 133 (428)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444454444443
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=91.39 E-value=30 Score=39.29 Aligned_cols=6 Identities=50% Similarity=1.060 Sum_probs=3.3
Q ss_pred hhcCcH
Q 010719 177 CLTGGK 182 (503)
Q Consensus 177 cL~GGk 182 (503)
+++||.
T Consensus 654 ~~tgG~ 659 (1164)
T TIGR02169 654 AMTGGS 659 (1164)
T ss_pred CccCCC
Confidence 446664
No 7
>PRK02224 chromosome segregation protein; Provisional
Probab=91.18 E-value=30 Score=38.97 Aligned_cols=13 Identities=23% Similarity=0.483 Sum_probs=6.3
Q ss_pred CChhhHHHHhhHH
Q 010719 300 DSPEVHAQKVDKL 312 (503)
Q Consensus 300 dspe~ha~kvdkL 312 (503)
+.+.-|..+++++
T Consensus 468 ~~~~~~~~~~~~~ 480 (880)
T PRK02224 468 ETIEEDRERVEEL 480 (880)
T ss_pred hhHHHHHHHHHHH
Confidence 3444455555554
No 8
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=89.94 E-value=49 Score=39.35 Aligned_cols=65 Identities=28% Similarity=0.405 Sum_probs=36.5
Q ss_pred cHHHHHHHHHhHHHHHHHhccchhhhccChHHHHHHHHHhhhccCcchhhhhhhhHHHHHHHHHhHHh
Q 010719 181 GKEVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAEASDLKKRLEGMK 248 (503)
Q Consensus 181 GkeVh~aivssiqdLA~afs~y~DEvLvkReELlq~aq~AisGLK~nAdiariD~Ea~~L~~kl~~~~ 248 (503)
..+-+..+...++...+....+..++--.++++..+ |.....++. .+..++.++..++.+++...
T Consensus 251 ~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~-~~~~~~~~~--~~~~le~~~~~~~~~~~~~~ 315 (1163)
T COG1196 251 LEEELEELQEELEEAEKEIEELKSELEELREELEEL-QEELLELKE--EIEELEGEISLLRERLEELE 315 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555544445555555 555554443 66666666666666666554
No 9
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=89.47 E-value=43 Score=38.06 Aligned_cols=20 Identities=20% Similarity=0.552 Sum_probs=9.3
Q ss_pred hhhhhhhHHHHHHHHHhHHh
Q 010719 229 DIERIDAEASDLKKRLEGMK 248 (503)
Q Consensus 229 diariD~Ea~~L~~kl~~~~ 248 (503)
++..+-.+...|+.+++++.
T Consensus 675 ~l~~l~~~l~~l~~~l~~l~ 694 (1164)
T TIGR02169 675 ELQRLRERLEGLKRELSSLQ 694 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555554444
No 10
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=89.27 E-value=55 Score=38.97 Aligned_cols=85 Identities=22% Similarity=0.358 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHH---HHhhhchhHHHHHHhhhhhhhhHHH
Q 010719 357 EIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIV---EHLKTKEDELLKSIAACRVESDVLS 433 (503)
Q Consensus 357 el~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv---~hLk~KedELsksi~sc~vEA~vv~ 433 (503)
.+..||..++.+.++++.++.-+...+.....++.+..++.......-..+- ..++.+..+|.+.+.....+..-.+
T Consensus 825 ~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~ 904 (1163)
T COG1196 825 RLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELK 904 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666666666666666555554444433333332 2334444555555555555555444
Q ss_pred HHHHhhHh
Q 010719 434 TWINFLED 441 (503)
Q Consensus 434 tWinFLed 441 (503)
.=|..+..
T Consensus 905 ~~~~~~~~ 912 (1163)
T COG1196 905 EEIEKLRE 912 (1163)
T ss_pred HHHHHHHH
Confidence 44444433
No 11
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=87.93 E-value=12 Score=39.00 Aligned_cols=106 Identities=22% Similarity=0.339 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhHH
Q 010719 353 EKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVL 432 (503)
Q Consensus 353 ~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~vv 432 (503)
+.|+++-+++..|++|--.|+++-.++- --.-|+| +.||--..|.-.....-+|+|+..++-|.- +
T Consensus 45 E~EaelesqL~q~etrnrdl~t~nqrl~----~E~e~~K------ek~e~q~~q~y~q~s~Leddlsqt~aikeq----l 110 (333)
T KOG1853|consen 45 EIEAELESQLDQLETRNRDLETRNQRLT----TEQERNK------EKQEDQRVQFYQQESQLEDDLSQTHAIKEQ----L 110 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 4566666666666666555555433322 2223333 233333333333333447888888777742 2
Q ss_pred HHHHHhhHhhHHHhhhHHHHHHhhhhHHHhhhHhHHHHHHHHHHHHHHHhhchhhHHHH
Q 010719 433 STWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPSISRIG 491 (503)
Q Consensus 433 ~tWinFLedtW~lq~~~~e~kekq~~deler~~~~f~~l~~~~ls~~ke~l~~~i~~i~ 491 (503)
..+|. +=.|.||.|||..-. +++.|+.|-..|...|+|+-
T Consensus 111 ~kyiR---------------eLEQaNDdLErakRa----ti~sleDfeqrLnqAIErnA 150 (333)
T KOG1853|consen 111 RKYIR---------------ELEQANDDLERAKRA----TIYSLEDFEQRLNQAIERNA 150 (333)
T ss_pred HHHHH---------------HHHHhccHHHHhhhh----hhhhHHHHHHHHHHHHHHHH
Confidence 33333 235899999998753 67888999999999998874
No 12
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.15 E-value=77 Score=38.22 Aligned_cols=91 Identities=12% Similarity=0.039 Sum_probs=69.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhHHHHHHHhh
Q 010719 360 AEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFL 439 (503)
Q Consensus 360 ~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~vv~tWinFL 439 (503)
.++..|.+..+.+..+..+.+..++..+.+..+.+.++.+..++-. ....|+...++|...+..|..+-.-+..=|.=|
T Consensus 836 ~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~-~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~ 914 (1311)
T TIGR00606 836 HELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQ-RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPL 914 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3444444445555888888999999999999999999999999555 888899999999999998888777776666666
Q ss_pred HhhH-HHhhhHHH
Q 010719 440 EDSW-VLQCSQME 451 (503)
Q Consensus 440 edtW-~lq~~~~e 451 (503)
...| .+|+.|.+
T Consensus 915 ~~~~~~~~~~~~~ 927 (1311)
T TIGR00606 915 ETFLEKDQQEKEE 927 (1311)
T ss_pred hHHHHHHHHHHHH
Confidence 5555 35555543
No 13
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=86.96 E-value=80 Score=38.18 Aligned_cols=121 Identities=15% Similarity=0.193 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHhHHHHHHHH-HHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhHHHHH
Q 010719 357 EIGAEISELVKQRDHLEAEL-KKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTW 435 (503)
Q Consensus 357 el~~EI~~LekqrdeLEAeL-kkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~vv~tW 435 (503)
++..++..|+||...+++++ +.++..+....-.+.....|...|++ ++..|..+.+++-.-+..-.-|..-+..=
T Consensus 369 ~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~----~~~~L~~e~~~~~~~~~~~~ee~~~i~~~ 444 (1074)
T KOG0250|consen 369 KLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEE----QINSLREELNEVKEKAKEEEEEKEHIEGE 444 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45677888888888899998 88999999999999999999999998 77889999999999999999999999888
Q ss_pred HHhhHhhHHHhhhHHHHHHhhhhHHHhhhHhHHHHHHHHHHHHHHH
Q 010719 436 INFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKK 481 (503)
Q Consensus 436 inFLedtW~lq~~~~e~kekq~~deler~~~~f~~l~~~~ls~~ke 481 (503)
|.-|.-+=.-++...+-=.+--+|-+-.+++++..|..-+=..|-.
T Consensus 445 i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG~~m~~lL~~I~r~~~~ 490 (1074)
T KOG0250|consen 445 ILQLRKKIENISEELKDLKKTKTDKVSAFGPNMPQLLRAIERRKRR 490 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHhc
Confidence 8888765554444433333444566778888888776554444433
No 14
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.96 E-value=74 Score=37.77 Aligned_cols=123 Identities=24% Similarity=0.319 Sum_probs=80.2
Q ss_pred hHHHHHHHHhhhchHHHhHhhhhhhhhhHHhhhhhhhccccchHHH---HHHHHHHHHHHHhHHHHHHHHHHHhHHHHHH
Q 010719 310 DKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKE---KEIGAEISELVKQRDHLEAELKKVNLSLAAA 386 (503)
Q Consensus 310 dkLkvlsEsLanS~skAEkrI~d~R~QKEeAl~fRv~K~~Ev~~~E---kel~~EI~~LekqrdeLEAeLkkVn~sL~aA 386 (503)
+|++.|++-| -|.+.+|.-.+.--++--+||..--.|+.++- ||+..-+..|--.+.+|.++||.+.....-.
T Consensus 451 ~k~qqls~kl----~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~ 526 (1118)
T KOG1029|consen 451 FKLQQLSGKL----QDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKET 526 (1118)
T ss_pred HHHHHHhhhh----hhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCc
Confidence 3555543332 34555555555555666677766666655432 3333334444556778888888877666554
Q ss_pred HHH---HHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhHHHHHHHhhHhhH
Q 010719 387 QAR---LRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSW 443 (503)
Q Consensus 387 ~aR---l~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~vv~tWinFLedtW 443 (503)
.+| |+.+++.| ..|+.|||-+.|+|++.+.+-..|-++.++=..=|..+-
T Consensus 527 ~~~~s~L~aa~~~k-------e~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~ 579 (1118)
T KOG1029|consen 527 TQRKSELEAARRKK-------ELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDV 579 (1118)
T ss_pred chHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 443 34444444 468999999999999999999999999998887775543
No 15
>PHA02562 46 endonuclease subunit; Provisional
Probab=85.96 E-value=51 Score=34.95 Aligned_cols=19 Identities=32% Similarity=0.385 Sum_probs=9.6
Q ss_pred CChhHHHHHHHHHHhhhcC
Q 010719 162 PNEEEISLLLEMFGLCLTG 180 (503)
Q Consensus 162 P~eeEvsLLlEiFglcL~G 180 (503)
||-.=-|-|++....||+|
T Consensus 35 ~NG~GKStll~aI~~~l~G 53 (562)
T PHA02562 35 KNGAGKSTMLEALTFALFG 53 (562)
T ss_pred CCCCCHHHHHHHHHHHHcC
Confidence 4444445555555555554
No 16
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=85.08 E-value=20 Score=34.99 Aligned_cols=74 Identities=20% Similarity=0.338 Sum_probs=60.2
Q ss_pred ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHH
Q 010719 349 NESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSI 422 (503)
Q Consensus 349 ~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi 422 (503)
++...--.++..||..|.++.+.|+.+.++++..+++....+....+.-++.++...+|.-.+..-.++|..-|
T Consensus 45 d~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v 118 (251)
T PF11932_consen 45 DQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFV 118 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444456788899999999999999999999999999999999888888888888888888877777776544
No 17
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=84.52 E-value=85 Score=36.29 Aligned_cols=72 Identities=26% Similarity=0.361 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH-----hHHHHHHHHHHHHhHHHHH---HHHHhhHHHHHHhhhchhHHHHHHhh
Q 010719 353 EKEKEIGAEISELVKQRDHLEAELKKV-----NLSLAAAQARLRNAQEERE---QFDEANDQIVEHLKTKEDELLKSIAA 424 (503)
Q Consensus 353 ~~Ekel~~EI~~LekqrdeLEAeLkkV-----n~sL~aA~aRl~~~rEERd---qFdEAnnqIv~hLk~KedELsksi~s 424 (503)
..++++..-...++.+...++..+... ...+..+..++.+..+..+ .|++.--+-+.+++.+...+...+..
T Consensus 593 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 672 (908)
T COG0419 593 ERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRR 672 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444 3333333333333333333 33333333344444444444444443
No 18
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.39 E-value=35 Score=34.25 Aligned_cols=155 Identities=25% Similarity=0.383 Sum_probs=112.3
Q ss_pred HHhhhccC-----cchhhhhhhhHHHHHHHHHhHHhhhccCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 010719 218 QTAITGLK-----MNSDIERIDAEASDLKKRLEGMKALQNSSNEDLEQASEKTTKATIEALKEALAQIRVCTRLEGLLLK 292 (503)
Q Consensus 218 q~AisGLK-----~nAdiariD~Ea~~L~~kl~~~~~~~~~s~~~~~~~~e~t~~a~~ea~k~al~qiRlcS~lE~lllk 292 (503)
|+||.++. +.--|.+||+|.+.++.+|..++.-
T Consensus 18 ~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~g------------------------------------------ 55 (218)
T KOG1655|consen 18 QDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPG------------------------------------------ 55 (218)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCC------------------------------------------
Confidence 55666663 2334788999999999988888521
Q ss_pred hhhccCCCChhhHHHHhhHHHHHHHHhhhchHHHhHhhhhhhhhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHH
Q 010719 293 KKLLSYGDSPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHL 372 (503)
Q Consensus 293 kk~~~~Gdspe~ha~kvdkLkvlsEsLanS~skAEkrI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeL 372 (503)
|.-.+-|..-|+||- -|++.|+-++--.-++|--.-++=..+.-|.-.+=+..|.--..++
T Consensus 56 ---------paq~~~KqrAlrVLk----------QKK~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~m 116 (218)
T KOG1655|consen 56 ---------PAQNALKQRALRVLK----------QKKMYENQKDSLDQQSFNMEQANFTAESLKDTQATVAAMKDTNKEM 116 (218)
T ss_pred ---------cchhHHHHHHHHHHH----------HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111223444556642 3678888778888889999888888899999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhh-------hchhHHHHHHhhhhhhhhHHHHHHHhh
Q 010719 373 EAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLK-------TKEDELLKSIAACRVESDVLSTWINFL 439 (503)
Q Consensus 373 EAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk-------~KedELsksi~sc~vEA~vv~tWinFL 439 (503)
..+-|+|||. .+.+.+-|=.-.=+.++.|-+.|- .-|+||......-..|++...+==++|
T Consensus 117 K~~ykkvnId------~IedlQDem~Dlmd~a~EiQE~Lgr~y~~peide~dL~aELdaL~~E~d~~~~~~~~~ 184 (218)
T KOG1655|consen 117 KKQYKKVNID------KIEDLQDEMEDLMDQADEIQEVLGRNYNTPDIDEADLDAELDALGQELDMLEEDENYL 184 (218)
T ss_pred HHHHccCCHH------HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHHHHhHhhccccccccc
Confidence 9999999996 566676666555566677777775 457888888887777777655444443
No 19
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=80.70 E-value=18 Score=34.68 Aligned_cols=148 Identities=20% Similarity=0.276 Sum_probs=73.3
Q ss_pred hhhhhHHHHHHHHHhHHhhhccCCchhhhhhhhhhhHHH-HHHHHHHHHHHHHHhhhhhhhhhhhhccCCCChhhHHHHh
Q 010719 231 ERIDAEASDLKKRLEGMKALQNSSNEDLEQASEKTTKAT-IEALKEALAQIRVCTRLEGLLLKKKLLSYGDSPEVHAQKV 309 (503)
Q Consensus 231 ariD~Ea~~L~~kl~~~~~~~~~s~~~~~~~~e~t~~a~-~ea~k~al~qiRlcS~lE~lllkkk~~~~Gdspe~ha~kv 309 (503)
.|.| ...|++.||.+-.-+.....+ - -+.-..+ ...|.|-+-||=+.-.=-|+||-+=-=. ...-+
T Consensus 31 tR~d--Vi~L~e~Ld~~L~~~~ar~~g---I-cpvr~~ly~~~F~ELIRQVTi~C~ERGlLL~rvrde-------~~~~l 97 (189)
T PF10211_consen 31 TRQD--VIQLQEWLDKMLQQRQARETG---I-CPVREELYSQCFDELIRQVTIDCPERGLLLLRVRDE-------YRMTL 97 (189)
T ss_pred CHHH--HHHHHHHHHHHHHHhcCCccc---c-cHHHHHHHHHHHHHHHHHHHhCcHHHhHHHHHHHHH-------HHHHH
Confidence 4555 457777777665322111100 0 0111123 5589999999988433344444410000 01112
Q ss_pred hHHHHHHHHhhhchHHHhHhhhhhhhhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHH
Q 010719 310 DKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQAR 389 (503)
Q Consensus 310 dkLkvlsEsLanS~skAEkrI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aR 389 (503)
++. ..+-+.+..|=++|.-+....-.++..+|..|++.+.+|+.++..+.........+
T Consensus 98 ~~y---------------------~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~ 156 (189)
T PF10211_consen 98 DAY---------------------QTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKR 156 (189)
T ss_pred HHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 23333344454444444433345667777777777777777777776666665544
Q ss_pred HHH--------hHHHHHHHHHhhHHHHHHhh
Q 010719 390 LRN--------AQEEREQFDEANDQIVEHLK 412 (503)
Q Consensus 390 l~~--------~rEERdqFdEAnnqIv~hLk 412 (503)
... ..+|=+.+-..|.|+-+.|+
T Consensus 157 ~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 157 EEELRQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 433 33344444444444444443
No 20
>PHA02562 46 endonuclease subunit; Provisional
Probab=80.20 E-value=86 Score=33.30 Aligned_cols=21 Identities=5% Similarity=0.240 Sum_probs=14.6
Q ss_pred ccCCChhHHHHHHHHHHhhhc
Q 010719 159 LEAPNEEEISLLLEMFGLCLT 179 (503)
Q Consensus 159 leaP~eeEvsLLlEiFglcL~ 179 (503)
+.++..+=...|-++||+-..
T Consensus 145 ~~~~~~er~~il~~l~~~~~~ 165 (562)
T PHA02562 145 MQLSAPARRKLVEDLLDISVL 165 (562)
T ss_pred hcCChHhHHHHHHHHhCCHHH
Confidence 445566778888889985543
No 21
>PRK10884 SH3 domain-containing protein; Provisional
Probab=80.17 E-value=26 Score=34.34 Aligned_cols=79 Identities=13% Similarity=0.260 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhHHHHHH
Q 010719 357 EIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWI 436 (503)
Q Consensus 357 el~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~vv~tWi 436 (503)
.+..-+..|++|.++|+++|...+.+.++-.+.+.+.- +.+++.+..|+.+-++|...+..-+.|.+.+.+=.
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~-------~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKV-------AQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777777776666554333333322 23555666688888899888888777777666655
Q ss_pred HhhHhh
Q 010719 437 NFLEDS 442 (503)
Q Consensus 437 nFLedt 442 (503)
.-+.++
T Consensus 163 ~~~~~~ 168 (206)
T PRK10884 163 DDKQRT 168 (206)
T ss_pred HHHHHH
Confidence 544443
No 22
>PRK04863 mukB cell division protein MukB; Provisional
Probab=78.93 E-value=1.8e+02 Score=36.35 Aligned_cols=71 Identities=17% Similarity=0.263 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHhhhcCcHHH------------HHH-HHHhHHHHHHHhccchh---hhccCh------HHHHHHHHHhhh
Q 010719 165 EEISLLLEMFGLCLTGGKEV------------HHA-ITSSIQDLATAISKYQD---EVLVKR------EELLQFAQTAIT 222 (503)
Q Consensus 165 eEvsLLlEiFglcL~GGkeV------------h~a-ivssiqdLA~afs~y~D---EvLvkR------eELlq~aq~Ais 222 (503)
++.+-+-.||+-.+.|+-.. |+- |=..|+++=.++..|.= ++=+.+ ..|+..+|+-++
T Consensus 192 ~dR~kF~kLf~taiy~~i~~~i~~fl~~yll~e~~~v~~~i~~m~~~l~~~r~t~~~~~~tq~drdlFk~lI~~~~~~~a 271 (1486)
T PRK04863 192 SDRSKFYRLIEASLYGGISSAITRSLRDYLLPENSGVRKAFQDMEAALRENRMTLEAIRVTQSDRDLFKHLITESTNYVA 271 (1486)
T ss_pred chHHHHHHHHHHHHHhhHHHhHHHHHHHHcCCCChhhhHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHhhhhhhhhH
Confidence 67777899999999987652 343 33347777777777653 333444 344455555543
Q ss_pred ccCcchhhhhhhhHHHHH
Q 010719 223 GLKMNSDIERIDAEASDL 240 (503)
Q Consensus 223 GLK~nAdiariD~Ea~~L 240 (503)
||.+|--.|--.+
T Consensus 272 -----ad~~r~~eERR~l 284 (1486)
T PRK04863 272 -----ADYMRHANERRVH 284 (1486)
T ss_pred -----HHHhhCHHHHHHH
Confidence 5555544443333
No 23
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=78.18 E-value=1.1e+02 Score=35.09 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=27.9
Q ss_pred HHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 010719 364 ELVKQRDHLEAELKKVNLSLAAAQARLRNAQEER 397 (503)
Q Consensus 364 ~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEER 397 (503)
.+..++.+||.|++++...|....-+...+..|.
T Consensus 542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 542 SCRQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777888999999999988888888777777776
No 24
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=77.97 E-value=43 Score=33.39 Aligned_cols=49 Identities=24% Similarity=0.455 Sum_probs=22.7
Q ss_pred HhhhhhhhhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 010719 328 KRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKK 378 (503)
Q Consensus 328 krI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkk 378 (503)
+++.+.+.++.++..--+.. +.....+++..+|..|+.+.+++++++.+
T Consensus 112 ~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~l~~~~~~~~~~~~~ 160 (301)
T PF14362_consen 112 QKLDEIRQEKQDAIQAQVQA--SFDAQIARLDAEIAALQAEIDQLEKEIDR 160 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443333322222 34444455555555555555555555544
No 25
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=77.69 E-value=16 Score=31.87 Aligned_cols=76 Identities=22% Similarity=0.251 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhHHHHHHH
Q 010719 358 IGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWIN 437 (503)
Q Consensus 358 l~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~vv~tWin 437 (503)
|..||+++|....+....|..||.+|... ....|.|...++=.+.|-.+|..-|.+|..=.. -|-=.-.+...|=
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL~~~----eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk-ENrK~~~ls~~l~ 77 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRLRRR----ELSPEARRSLEKELNELKEKLENNEKELKLLRK-ENRKSMLLSVALF 77 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHccc----CCChHHHHHHHHHHHHHHHHhhccHHHHHHHHH-hhhhhHHHHHHHH
Confidence 67899999999999999999999988654 467789999999999999999999999975443 3444445555544
Q ss_pred h
Q 010719 438 F 438 (503)
Q Consensus 438 F 438 (503)
|
T Consensus 78 ~ 78 (85)
T PF15188_consen 78 F 78 (85)
T ss_pred H
Confidence 4
No 26
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=77.34 E-value=1.3e+02 Score=33.63 Aligned_cols=124 Identities=16% Similarity=0.142 Sum_probs=65.5
Q ss_pred ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhh
Q 010719 349 NESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVE 428 (503)
Q Consensus 349 ~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vE 428 (503)
++...-..++..+|..++.+.++++.+++.+...+..+..++..++++..+-...--+-+..|+.+.+++.+.....+.+
T Consensus 205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~ 284 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQ 284 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556677777777777777877888888888888877777666544422222222335555555555555444333
Q ss_pred hhHH---HHHHHhhHhhHH-----HhhhHHHHHHhhhhHHHhhhHhHHHHHH
Q 010719 429 SDVL---STWINFLEDSWV-----LQCSQMELKEKQVSEELVKHEDYFVNLA 472 (503)
Q Consensus 429 A~vv---~tWinFLedtW~-----lq~~~~e~kekq~~deler~~~~f~~l~ 472 (503)
..-+ ..|.-|+-.++. ++.-..-.+.+.+.+.|+....|+....
T Consensus 285 l~~l~~~~~p~~l~~~ll~~~~~q~~~e~~~~~~~~~~~~l~~~~~~i~~~~ 336 (650)
T TIGR03185 285 LRELAADPLPLLLIPNLLDSTKAQLQKEEQSQQNQLTQEELEERDKELLESL 336 (650)
T ss_pred HHHHhcccCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 122333443332 1111111133346666666666666543
No 27
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=76.21 E-value=1.5e+02 Score=36.86 Aligned_cols=66 Identities=26% Similarity=0.222 Sum_probs=31.9
Q ss_pred ccCC-ChhHHHHHHHHHHhhhcCcHHH---------HHHHHHhHHHHHHHhccchhhhccChHHH----------HHHHH
Q 010719 159 LEAP-NEEEISLLLEMFGLCLTGGKEV---------HHAITSSIQDLATAISKYQDEVLVKREEL----------LQFAQ 218 (503)
Q Consensus 159 leaP-~eeEvsLLlEiFglcL~GGkeV---------h~aivssiqdLA~afs~y~DEvLvkReEL----------lq~aq 218 (503)
||-| .++++.-|.+-..--+.-=+.| .-+++..+|.-|..-+++-+-|..+=|+. ...||
T Consensus 1504 l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~ 1583 (1758)
T KOG0994|consen 1504 LELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQ 1583 (1758)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556 6677666554333222221222 23444555555665666555544443322 23366
Q ss_pred Hhhhcc
Q 010719 219 TAITGL 224 (503)
Q Consensus 219 ~AisGL 224 (503)
+||.|.
T Consensus 1584 ~ai~~a 1589 (1758)
T KOG0994|consen 1584 DAIQGA 1589 (1758)
T ss_pred HHHHhh
Confidence 666664
No 28
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=75.51 E-value=1.5e+02 Score=33.63 Aligned_cols=8 Identities=13% Similarity=0.177 Sum_probs=3.0
Q ss_pred hchhhHHH
Q 010719 483 LGPSISRI 490 (503)
Q Consensus 483 l~~~i~~i 490 (503)
|...|..|
T Consensus 1012 L~~~i~~i 1019 (1179)
T TIGR02168 1012 LTEAKETL 1019 (1179)
T ss_pred HHHHHHHH
Confidence 33333333
No 29
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=74.94 E-value=2e+02 Score=34.85 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=15.7
Q ss_pred CcchhhhhhhhHHHHHHHHHhHHh
Q 010719 225 KMNSDIERIDAEASDLKKRLEGMK 248 (503)
Q Consensus 225 K~nAdiariD~Ea~~L~~kl~~~~ 248 (503)
+.-..|.|+..++..++++|+...
T Consensus 789 ~~v~~i~r~~~ei~~l~~qie~l~ 812 (1311)
T TIGR00606 789 TDVTIMERFQMELKDVERKIAQQA 812 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666777777777777665
No 30
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=74.88 E-value=2e+02 Score=34.71 Aligned_cols=183 Identities=16% Similarity=0.211 Sum_probs=107.4
Q ss_pred hhHHHHHHHHhhhchHHHhHhhhhhhhhhHHhhhhhhhccccchHHHHHH---HHHHHHHHHhHHHHHH---HHHHHhH-
Q 010719 309 VDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEI---GAEISELVKQRDHLEA---ELKKVNL- 381 (503)
Q Consensus 309 vdkLkvlsEsLanS~skAEkrI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel---~~EI~~LekqrdeLEA---eLkkVn~- 381 (503)
=.++..+...+.+-.+.++.++.+...|....|+=++.=.+.+...++++ ..+|...+..+..+.. =++..=.
T Consensus 731 d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~ 810 (1201)
T PF12128_consen 731 DEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDK 810 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 34556666667777777777777777777777776666655555444332 2333333333332211 1111111
Q ss_pred ------HHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhHHHHHHHhhHhhHHHhhhHHHHHHh
Q 010719 382 ------SLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEK 455 (503)
Q Consensus 382 ------sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~vv~tWinFLedtW~lq~~~~e~kek 455 (503)
.-.....++...+.++.+|++.-+.....++.+-.++.+.+...+....-+..-++-|.+.|.-= .+....
T Consensus 811 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l~~~~~~l---~~~~~~ 887 (1201)
T PF12128_consen 811 VDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLRRLRDLLEKL---AELSEP 887 (1201)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhcCCC
Confidence 23455667788888888999999999999999999999999998888888888888777766421 333444
Q ss_pred hhhHHHhhhHhHHHHHHHHHHHHHHHhhchhhHHHHHHHHhhh
Q 010719 456 QVSEELVKHEDYFVNLAISLLSAYKKELGPSISRIGKFVENLK 498 (503)
Q Consensus 456 q~~deler~~~~f~~l~~~~ls~~ke~l~~~i~~i~~~v~nl~ 498 (503)
...++.+. .++-....+..++..+......|+++|+.++
T Consensus 888 ~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~~f~ 926 (1201)
T PF12128_consen 888 PNAEDAEG----SVDERLRDLEDLLQRRKRLREELKKAVERFK 926 (1201)
T ss_pred CCchhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444442 2222223333333344444444555544443
No 31
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=74.80 E-value=2e+02 Score=34.62 Aligned_cols=58 Identities=22% Similarity=0.279 Sum_probs=36.5
Q ss_pred hccCcchhhhhhhhHHHHHHHHHhHHhhhccCCchhhhhhhhhhhHH-----HHHHHHHHHHHHH
Q 010719 222 TGLKMNSDIERIDAEASDLKKRLEGMKALQNSSNEDLEQASEKTTKA-----TIEALKEALAQIR 281 (503)
Q Consensus 222 sGLK~nAdiariD~Ea~~L~~kl~~~~~~~~~s~~~~~~~~e~t~~a-----~~ea~k~al~qiR 281 (503)
---++-++=+|.|.| .|+.++.+..+.+.+-.+-+.+.++..-.+ -.+.+|+...+.|
T Consensus 375 ~e~q~~~qe~~~e~e--qLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~ 437 (980)
T KOG0980|consen 375 QEQQREAQENREEQE--QLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELR 437 (980)
T ss_pred HHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333566777777777 899999999888876666554433321111 2566777766543
No 32
>PRK11281 hypothetical protein; Provisional
Probab=74.67 E-value=2.1e+02 Score=34.87 Aligned_cols=131 Identities=16% Similarity=0.209 Sum_probs=63.7
Q ss_pred HhhHHHHHHHHhhhchHHHhHhhhhhhhhhHHhhhhhh---hccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHH
Q 010719 308 KVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRV---VKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLA 384 (503)
Q Consensus 308 kvdkLkvlsEsLanS~skAEkrI~d~R~QKEeAl~fRv---~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~ 384 (503)
+.++-+.=++.|......|.+++.+...+.+ +++-.. .+...-.....++...+..++.+..+.+++|...|+.|.
T Consensus 74 qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le-~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi 152 (1113)
T PRK11281 74 KIDRQKEETEQLKQQLAQAPAKLRQAQAELE-ALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLV 152 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555666666666666666555 333110 001111122234555555666666666666666666666
Q ss_pred HHHHHHHHhHHH----HHHHHHhhHHHHHHhhhchhHHHH-HHhhhhhhhhHHHHHHHhhH
Q 010719 385 AAQARLRNAQEE----REQFDEANDQIVEHLKTKEDELLK-SIAACRVESDVLSTWINFLE 440 (503)
Q Consensus 385 aA~aRl~~~rEE----RdqFdEAnnqIv~hLk~KedELsk-si~sc~vEA~vv~tWinFLe 440 (503)
.++.|...++.. +.+=.|.++++-.---..+. |+. ......+|...+++=+.|+.
T Consensus 153 ~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~-l~~~~~~~l~ae~~~l~~~~~~~~ 212 (1113)
T PRK11281 153 SLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKA-LRPSQRVLLQAEQALLNAQNDLQR 212 (1113)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 655544433322 44555555543221111222 332 24555666666666555544
No 33
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=74.66 E-value=19 Score=37.06 Aligned_cols=34 Identities=32% Similarity=0.522 Sum_probs=21.4
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHH
Q 010719 351 SSEKEKEIGAEISELVKQRDHLEAELKKVNLSLA 384 (503)
Q Consensus 351 v~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~ 384 (503)
+..-|+++..|+..||+++++|++|++.+...+.
T Consensus 55 le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~ 88 (314)
T PF04111_consen 55 LEQEEEELLQELEELEKEREELDQELEELEEELE 88 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666667777777777666666555433
No 34
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=74.55 E-value=80 Score=30.39 Aligned_cols=66 Identities=35% Similarity=0.385 Sum_probs=44.6
Q ss_pred hHHHHHHHHhhhchHHHhHhhhhhhhhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 010719 310 DKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVN 380 (503)
Q Consensus 310 dkLkvlsEsLanS~skAEkrI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn 380 (503)
.+++.-.+.|.....+.+.+|.+...+.+++..-| +-+.--.++..++..|+++..+|.++|++..
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r-----~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~ 130 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGR-----EESEEREELLEELEELKKELKELKKELEKYS 130 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555677777788888888877777774433 2234444577788888888888888887443
No 35
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=74.36 E-value=29 Score=34.68 Aligned_cols=68 Identities=26% Similarity=0.365 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHH---HhhhchhHHHHH
Q 010719 354 KEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVE---HLKTKEDELLKS 421 (503)
Q Consensus 354 ~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~---hLk~KedELsks 421 (503)
.-.|+..|+..|...|.....+|..+|.-+|.-..=++.++.||++..+.-++... -||...|++-++
T Consensus 33 ~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 33 CLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677889999999999999999999999999999999999999999888776544 455555665554
No 36
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=73.64 E-value=6.1 Score=31.74 Aligned_cols=51 Identities=27% Similarity=0.502 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHHHH----HHHHHHHhHHHHHHHHHhhHHH
Q 010719 357 EIGAEISELVKQRDHLEAELKKVNLSLAA----AQARLRNAQEEREQFDEANDQI 407 (503)
Q Consensus 357 el~~EI~~LekqrdeLEAeLkkVn~sL~a----A~aRl~~~rEERdqFdEAnnqI 407 (503)
++.+||..|+|+.+.++.++.+++..|+. +.|--.....+|+.+.+...+|
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~ 55 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEEL 55 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999988874 4444455566666666655543
No 37
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=73.39 E-value=24 Score=32.51 Aligned_cols=30 Identities=20% Similarity=0.137 Sum_probs=17.4
Q ss_pred hHHHHHHhhhhhhhhHHHHHHHhhHhhHHH
Q 010719 416 DELLKSIAACRVESDVLSTWINFLEDSWVL 445 (503)
Q Consensus 416 dELsksi~sc~vEA~vv~tWinFLedtW~l 445 (503)
+||...|.....|-..+..=+..|.+.|..
T Consensus 112 ~el~~~i~~l~~e~~~l~~kL~~l~~~~~~ 141 (169)
T PF07106_consen 112 EELREEIEELEEEIEELEEKLEKLRSGSKP 141 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 345555555555555566666666666655
No 38
>PRK04863 mukB cell division protein MukB; Provisional
Probab=73.29 E-value=2.5e+02 Score=35.20 Aligned_cols=63 Identities=13% Similarity=0.221 Sum_probs=34.1
Q ss_pred ChhHHHH-HHHHHHhhh---cCcHHHHHHHHHhHHHHHHHhccchhhhccChHHHHHHHHHhhhccCcchhhhh
Q 010719 163 NEEEISL-LLEMFGLCL---TGGKEVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIER 232 (503)
Q Consensus 163 ~eeEvsL-LlEiFglcL---~GGkeVh~aivssiqdLA~afs~y~DEvLvkReELlq~aq~AisGLK~nAdiar 232 (503)
+..|+.- +-+++|+.. +...+.|..++.- -...+.+.+ . -.|+.+.+.-.++|.| +|+.+|-+
T Consensus 149 ti~Elk~~i~e~~Gl~~~qF~ri~~Y~~~Ll~q-G~f~~~L~a-~----~dR~kF~kLf~taiy~-~i~~~i~~ 215 (1486)
T PRK04863 149 TLNELKDKAAALEGVQFKQFNSITDYHSLMFDL-GIIPRRLRS-S----SDRSKFYRLIEASLYG-GISSAITR 215 (1486)
T ss_pred CHHHHHHHHHHhcCCceeeeccHHHHHHHHHHC-CCchhhhhc-c----chHHHHHHHHHHHHHh-hHHHhHHH
Confidence 5556655 346667554 4455556655532 223333333 1 2467787888888775 45555544
No 39
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=73.25 E-value=1.8e+02 Score=33.49 Aligned_cols=115 Identities=23% Similarity=0.168 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHH--HHHHhhhhhhhhhhhhccCCCChhhHHHHhhHHHHHHHHhhhchHHHhH-------hhhhhhhhhH
Q 010719 268 ATIEALKEALAQ--IRVCTRLEGLLLKKKLLSYGDSPEVHAQKVDKLKVLSESLSNSSVKAEK-------RISDHRSQKE 338 (503)
Q Consensus 268 a~~ea~k~al~q--iRlcS~lE~lllkkk~~~~Gdspe~ha~kvdkLkvlsEsLanS~skAEk-------rI~d~R~QKE 338 (503)
..+..+++-+++ .++|-..+..+.-+..-. | .-.+++.-.|+.--..++.-...+|+ -|.++..|..
T Consensus 145 ~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~-~---q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~ 220 (629)
T KOG0963|consen 145 VTVRNLKERLRKLEQLLEIFIENAANETEEKL-E---QEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELF 220 (629)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 467778888877 788888874443322211 1 11122333333333333333333443 3444444444
Q ss_pred Hhhhh----hhhccccchHHHHHHH---HHHHHHHHhHHHHHHHHHHHhHHHHHH
Q 010719 339 EALKV----RVVKANESSEKEKEIG---AEISELVKQRDHLEAELKKVNLSLAAA 386 (503)
Q Consensus 339 eAl~f----Rv~K~~Ev~~~Ekel~---~EI~~LekqrdeLEAeLkkVn~sL~aA 386 (503)
+.-+. =..|..||+-+=.+|. .=|-.||++...|.-||+++|.+...+
T Consensus 221 ~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~ 275 (629)
T KOG0963|consen 221 DLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLA 275 (629)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 44333 3357777777766664 357789999999999999999997776
No 40
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=73.08 E-value=1.3e+02 Score=34.83 Aligned_cols=38 Identities=24% Similarity=0.206 Sum_probs=26.0
Q ss_pred chhHHHHHHhhhhhhhhHHHHHHHhhHhhHHHhhhHHH
Q 010719 414 KEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQME 451 (503)
Q Consensus 414 KedELsksi~sc~vEA~vv~tWinFLedtW~lq~~~~e 451 (503)
-|.+..+.+..++.+-..++.+|.=+..+|.-|....+
T Consensus 633 AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 633 AEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555566666666666777778878888877766555
No 41
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=72.89 E-value=18 Score=32.07 Aligned_cols=51 Identities=29% Similarity=0.506 Sum_probs=42.6
Q ss_pred HHHHHHhHHHHHHHHHHHhHHH-HHHHHHHHHhHHHHHHHHHhhHHHHHHhh
Q 010719 362 ISELVKQRDHLEAELKKVNLSL-AAAQARLRNAQEEREQFDEANDQIVEHLK 412 (503)
Q Consensus 362 I~~LekqrdeLEAeLkkVn~sL-~aA~aRl~~~rEERdqFdEAnnqIv~hLk 412 (503)
-..+++.++.++.||..+..+| ..|+--...++-+|..++.-+.+....|+
T Consensus 10 r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~ 61 (100)
T PF06428_consen 10 REEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLK 61 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458899999999999999999 88888889999999999888877555444
No 42
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=72.28 E-value=1e+02 Score=30.98 Aligned_cols=29 Identities=28% Similarity=0.268 Sum_probs=11.9
Q ss_pred HHHHHHHhHHHHHHHHHHHhHHHHHHHHH
Q 010719 361 EISELVKQRDHLEAELKKVNLSLAAAQAR 389 (503)
Q Consensus 361 EI~~LekqrdeLEAeLkkVn~sL~aA~aR 389 (503)
++..++.+...++++|......++.+...
T Consensus 204 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 232 (423)
T TIGR01843 204 ERAEAQGELGRLEAELEVLKRQIDELQLE 232 (423)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433333
No 43
>PRK03918 chromosome segregation protein; Provisional
Probab=72.15 E-value=1.8e+02 Score=32.89 Aligned_cols=70 Identities=24% Similarity=0.317 Sum_probs=41.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHH--------HHHhhhchhHHHHHHhhhhhhhhHHHHHHHhhHhh
Q 010719 373 EAELKKVNLSLAAAQARLRNAQEEREQFDEANDQI--------VEHLKTKEDELLKSIAACRVESDVLSTWINFLEDS 442 (503)
Q Consensus 373 EAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqI--------v~hLk~KedELsksi~sc~vEA~vv~tWinFLedt 442 (503)
.++++.++..+......+...+++-++-.+..+.+ +..+..+-+++.+.+.+++.+-+.+...|+.|+..
T Consensus 618 ~~~l~~~~~~l~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~ 695 (880)
T PRK03918 618 EKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKT 695 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443333333333 35566677777888888888888888888887664
No 44
>smart00338 BRLZ basic region leucin zipper.
Probab=71.89 E-value=14 Score=29.25 Aligned_cols=46 Identities=33% Similarity=0.385 Sum_probs=31.7
Q ss_pred hHHhhhhhhhccccchHHHHH---HHHHHHHHHHhHHHHHHHHHHHhHH
Q 010719 337 KEEALKVRVVKANESSEKEKE---IGAEISELVKQRDHLEAELKKVNLS 382 (503)
Q Consensus 337 KEeAl~fRv~K~~Ev~~~Eke---l~~EI~~LekqrdeLEAeLkkVn~s 382 (503)
++-|..+|.+|-..+..+|.+ |..|.+.|..+.+.|+.++..+...
T Consensus 14 R~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 14 REAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999988887764 3456666666666666665555433
No 45
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=71.80 E-value=2.5e+02 Score=34.52 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=13.4
Q ss_pred chhhhhhhhHHHHHHHHHhHHh
Q 010719 227 NSDIERIDAEASDLKKRLEGMK 248 (503)
Q Consensus 227 nAdiariD~Ea~~L~~kl~~~~ 248 (503)
-+.|..+|+++..|...+....
T Consensus 755 ~~~i~~l~~~l~~l~~r~~~L~ 776 (1353)
T TIGR02680 755 DDELAELARELRALGARQRALA 776 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666655554
No 46
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=71.52 E-value=57 Score=29.46 Aligned_cols=72 Identities=19% Similarity=0.272 Sum_probs=51.3
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhh
Q 010719 351 SSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESD 430 (503)
Q Consensus 351 v~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~ 430 (503)
++..-+.+..++..|......|+.++......++.+..+...++. +...+...+..++-|..
T Consensus 57 l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~------------------~~~~~~~~~k~~kee~~ 118 (151)
T PF11559_consen 57 LSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQK------------------QLKSLEAKLKQEKEELQ 118 (151)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHH
Confidence 455667777888888888888888888888888877777665443 34455566666666667
Q ss_pred HHHHHHHhhH
Q 010719 431 VLSTWINFLE 440 (503)
Q Consensus 431 vv~tWinFLe 440 (503)
-+++|+....
T Consensus 119 klk~~~~~~~ 128 (151)
T PF11559_consen 119 KLKNQLQQRK 128 (151)
T ss_pred HHHHHHHHHH
Confidence 7777776544
No 47
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=70.89 E-value=1.7e+02 Score=32.17 Aligned_cols=92 Identities=20% Similarity=0.264 Sum_probs=54.6
Q ss_pred HHHhhHHHHHHHHhhhchHHHhHhhhhhh----hhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhH
Q 010719 306 AQKVDKLKVLSESLSNSSVKAEKRISDHR----SQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNL 381 (503)
Q Consensus 306 a~kvdkLkvlsEsLanS~skAEkrI~d~R----~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~ 381 (503)
.+.+|.|+.-...|+......++--.+++ .|+++--+. ..+-.|--.+++.+-+++++.+++..+|-+.=..+..
T Consensus 160 ~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl-~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~ 238 (420)
T COG4942 160 AERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKL-AQLLEERKKTLAQLNSELSADQKKLEELRANESRLKN 238 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 56677777766666665555554444443 222221111 1233455677888889999999998888766555555
Q ss_pred HHHHHHHHHHHhHHHHH
Q 010719 382 SLAAAQARLRNAQEERE 398 (503)
Q Consensus 382 sL~aA~aRl~~~rEERd 398 (503)
.+..+.+....+||.|+
T Consensus 239 ~Ias~e~~aA~~re~~a 255 (420)
T COG4942 239 EIASAEAAAAKAREAAA 255 (420)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555544445555554
No 48
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=70.83 E-value=1.6e+02 Score=37.79 Aligned_cols=78 Identities=27% Similarity=0.358 Sum_probs=64.2
Q ss_pred hccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHh
Q 010719 346 VKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIA 423 (503)
Q Consensus 346 ~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~ 423 (503)
++-..+.+-.+.....|..+..++.+|..+|++....|.....++.+-..+..||..-..+.-.+++--.++|....+
T Consensus 1041 k~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~ 1118 (1930)
T KOG0161|consen 1041 KAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERA 1118 (1930)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455555578888999999999999999999999999999999999999999998888877777766666655443
No 49
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=70.14 E-value=1.2e+02 Score=29.99 Aligned_cols=61 Identities=20% Similarity=0.372 Sum_probs=39.1
Q ss_pred hcCcHHHHHHHHHhHHHHHHHhccchhhhccChHHHHHHHHHhhhccCcchhhhhhhhHHHHHHHHHhHHh
Q 010719 178 LTGGKEVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAEASDLKKRLEGMK 248 (503)
Q Consensus 178 L~GGkeVh~aivssiqdLA~afs~y~DEvLvkReELlq~aq~AisGLK~nAdiariD~Ea~~L~~kl~~~~ 248 (503)
+||.-.....|.++|.|++.-+.+|.--+-. ..-.++..... +..|+.++..|+++.....
T Consensus 12 ~t~~~~~~~~l~~~~e~~~~~L~~~~~~~~~-~~~~~~~~e~~---------l~~L~~d~~~L~~k~~~~~ 72 (264)
T PF06008_consen 12 LTGAWPAPYKLLSSIEDLTNQLRSYRSKLNP-QKQQLDPLEKE---------LESLEQDVENLQEKATKVS 72 (264)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 5666666678889999999999998875322 22233333333 4445666667777776655
No 50
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=70.07 E-value=95 Score=29.90 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=13.1
Q ss_pred hhhhHHHhhhHhHHHHHHHHHH
Q 010719 455 KQVSEELVKHEDYFVNLAISLL 476 (503)
Q Consensus 455 kq~~deler~~~~f~~l~~~~l 476 (503)
+...+...|.+|+.-.|..++-
T Consensus 145 ~~~~~~anrwTDNI~~l~~~~~ 166 (188)
T PF03962_consen 145 KIAKEAANRWTDNIFSLKSYLK 166 (188)
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 4456677777777555444443
No 51
>PRK03918 chromosome segregation protein; Provisional
Probab=70.04 E-value=2e+02 Score=32.55 Aligned_cols=47 Identities=19% Similarity=0.394 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHh
Q 010719 357 EIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEA 403 (503)
Q Consensus 357 el~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEA 403 (503)
++..+++.+.++..+++.++..+...+..+...+...++.+..+++.
T Consensus 197 ~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~~~~l 243 (880)
T PRK03918 197 EKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEEL 243 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666666666666666655555555555555555544
No 52
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=69.17 E-value=1.1e+02 Score=29.27 Aligned_cols=156 Identities=18% Similarity=0.228 Sum_probs=99.9
Q ss_pred HHhhHHHHHHHHhhhchHHHhHhhhhhhhhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHH--
Q 010719 307 QKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLA-- 384 (503)
Q Consensus 307 ~kvdkLkvlsEsLanS~skAEkrI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~-- 384 (503)
+.-+..-.|.+.| +...|.=.|+..++.--...+.-=..=-+.++..|.+|..-++.+-.-.+.+.+.+......+.
T Consensus 18 e~~eyi~~L~~~l-~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~~E~~L~~~L~~~~~~~~~~~~~~~~l~~~~~~~ 96 (200)
T cd07624 18 KMNEYLTLFGEKL-GTIERISQRIHKERIEYFDELKEYSPIFQLWSASETELAPLLEGVSSAVERCTAALEVLLSDHEFV 96 (200)
T ss_pred HHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555 4455566677777766655555444445567777777877777776555555555544444333
Q ss_pred ---------HHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhHHHHHHHhhHhhHHHhhhHHHHHHh
Q 010719 385 ---------AAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEK 455 (503)
Q Consensus 385 ---------aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~vv~tWinFLedtW~lq~~~~e~kek 455 (503)
.-..-++.+=-.|+|+--.-..-.+.|..|..+|.+.|.+|.-+...++.
T Consensus 97 f~e~Lkey~~y~~svk~~l~~R~~~q~~~e~~~e~L~~k~~~l~~ev~~a~~~~e~~~~--------------------- 155 (200)
T cd07624 97 FLPPLREYLLYSDAVKDVLKRRDQFQIEYELSVEELNKKRLELLKEVEKLQDKLECANA--------------------- 155 (200)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 23345667777888888888888888888888887777776655554433
Q ss_pred hhhHHHhh--------hHhHHHHHHHHHHHHHHHhhc
Q 010719 456 QVSEELVK--------HEDYFVNLAISLLSAYKKELG 484 (503)
Q Consensus 456 q~~deler--------~~~~f~~l~~~~ls~~ke~l~ 484 (503)
.++.|++| ..+-|.+++..++..|++.+.
T Consensus 156 ~~~~E~~rF~~~K~~d~k~~l~~~a~~qi~~~~~~~~ 192 (200)
T cd07624 156 DLKADLERWKQNKRQDLKKILLDMAEKQIQYYEQCLA 192 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344444 356799999999999988643
No 53
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=69.14 E-value=83 Score=36.17 Aligned_cols=87 Identities=20% Similarity=0.322 Sum_probs=51.8
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHH---------------HhHHHHHHHHHhhHHHHHHhhhch
Q 010719 351 SSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLR---------------NAQEEREQFDEANDQIVEHLKTKE 415 (503)
Q Consensus 351 v~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~---------------~~rEERdqFdEAnnqIv~hLk~Ke 415 (503)
+..+||-|. +..++|..||+||......-..+..... ..|.-|.|.|.=-.+...-||.||
T Consensus 490 l~~LEkrL~----eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~ke 565 (697)
T PF09726_consen 490 LQQLEKRLA----EERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKE 565 (697)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555433 3456777777777766543332222222 135566777777777888888888
Q ss_pred hHHHHHHh------hh----hhhhhHHHHHHHhhHh
Q 010719 416 DELLKSIA------AC----RVESDVLSTWINFLED 441 (503)
Q Consensus 416 dELsksi~------sc----~vEA~vv~tWinFLed 441 (503)
|.+..-.. .+ ..|..++-.|++.+-|
T Consensus 566 e~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqd 601 (697)
T PF09726_consen 566 EQIRELESELQELRKYEKESEKDTEVLMSALSAMQD 601 (697)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 76543222 22 3478888888888765
No 54
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=68.48 E-value=1.4e+02 Score=30.35 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=24.6
Q ss_pred hhHHHHHHhh-----hhHHHhhhHhHHHHHHHHHHHHHHH
Q 010719 447 CSQMELKEKQ-----VSEELVKHEDYFVNLAISLLSAYKK 481 (503)
Q Consensus 447 ~~~~e~kekq-----~~deler~~~~f~~l~~~~ls~~ke 481 (503)
+.|..+.-.. +-=+=.+|+.||+.|-..+++.-.+
T Consensus 178 ~~yeri~~~~kg~gvvpl~g~~C~GC~m~l~~~~~~~V~~ 217 (239)
T COG1579 178 SEYERIRKNKKGVGVVPLEGRVCGGCHMKLPSQTLSKVRK 217 (239)
T ss_pred HHHHHHHhcCCCceEEeecCCcccCCeeeecHHHHHHHhc
Confidence 5677666555 2223368999999999998876555
No 55
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=67.71 E-value=55 Score=27.87 Aligned_cols=88 Identities=14% Similarity=0.220 Sum_probs=60.0
Q ss_pred HHHhhhchHHHhHhhhhhhhhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhH-
Q 010719 316 SESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQ- 394 (503)
Q Consensus 316 sEsLanS~skAEkrI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~r- 394 (503)
.+-..++..+++..+...+.....+- +..|....-++|...|..++.+.++|+.-..-|... ..|.....
T Consensus 7 ~~ev~~sl~~l~~~~~~~~~~~~~~~-----~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~n----p~kF~l~~~ 77 (97)
T PF09177_consen 7 KDEVQSSLDRLESLYRRWQRLRSDTS-----SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKN----PSKFNLSEE 77 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----HHHHT-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCC-----CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ccccCCCHH
Confidence 34455666677777766665555444 677889999999999999999999999888877655 33433333
Q ss_pred --HHHHHHHHhhHHHHHHhh
Q 010719 395 --EEREQFDEANDQIVEHLK 412 (503)
Q Consensus 395 --EERdqFdEAnnqIv~hLk 412 (503)
..|.+|=.+..+-|.++|
T Consensus 78 Ei~~Rr~fv~~~~~~i~~~k 97 (97)
T PF09177_consen 78 EISRRRQFVSAIRNQIKQMK 97 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 356677666666555543
No 56
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=67.05 E-value=1.6e+02 Score=30.29 Aligned_cols=53 Identities=15% Similarity=0.227 Sum_probs=34.7
Q ss_pred HHHHHhccCCChhHHHHHHHHHHhhhcCcHHHHHHHHHhHHHHHHHhccchhhhccChHHHHHHHHH
Q 010719 153 ITVSMILEAPNEEEISLLLEMFGLCLTGGKEVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQT 219 (503)
Q Consensus 153 I~lSmileaP~eeEvsLLlEiFglcL~GGkeVh~aivssiqdLA~afs~y~DEvLvkReELlq~aq~ 219 (503)
.+..+....| ++|++.-+| +-+-+.|.+-=..|..+..++....+.|.+--.+
T Consensus 59 ~~~A~~~~~P-------~Lely~~~c-------~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~ 111 (325)
T PF08317_consen 59 YVVAGYCTVP-------MLELYQFSC-------RELKKYISEGRQIFEEIEEETYESNPPLFREYYT 111 (325)
T ss_pred HHHHhccCCh-------HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHc
Confidence 3444555666 466776544 3455666677777888888888888888854333
No 57
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=66.77 E-value=1.1e+02 Score=28.36 Aligned_cols=86 Identities=23% Similarity=0.380 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHH------HHHhhhchhHHHHHHhhhhhhh
Q 010719 356 KEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQI------VEHLKTKEDELLKSIAACRVES 429 (503)
Q Consensus 356 kel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqI------v~hLk~KedELsksi~sc~vEA 429 (503)
...-.||..|.++...||.+|.+++..|..+...+.....-.-..+-.+.-| ++....+..+....++.-.+-|
T Consensus 31 ~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~a 110 (143)
T PF12718_consen 31 EQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKA 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456788999999999999999999999888888877755444444222111 1111222233333444555667
Q ss_pred hHHHHHHHhhHh
Q 010719 430 DVLSTWINFLED 441 (503)
Q Consensus 430 ~vv~tWinFLed 441 (503)
+-+...+.+||.
T Consensus 111 e~~eRkv~~le~ 122 (143)
T PF12718_consen 111 EHFERKVKALEQ 122 (143)
T ss_pred HHHHHHHHHHHh
Confidence 777777777764
No 58
>PRK00106 hypothetical protein; Provisional
Probab=66.53 E-value=2.3e+02 Score=31.93 Aligned_cols=18 Identities=33% Similarity=0.434 Sum_probs=9.4
Q ss_pred HHHHHhHHHHHHHHHHHh
Q 010719 363 SELVKQRDHLEAELKKVN 380 (503)
Q Consensus 363 ~~LekqrdeLEAeLkkVn 380 (503)
.+++.++.+++.+++.=+
T Consensus 79 eEi~~~R~ElEkel~eEr 96 (535)
T PRK00106 79 EEARKYREEIEQEFKSER 96 (535)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555666655544333
No 59
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=65.77 E-value=71 Score=33.19 Aligned_cols=76 Identities=29% Similarity=0.365 Sum_probs=51.2
Q ss_pred HHHHH-HHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhHHHHHHHhhHhhHHHhhhHHH
Q 010719 373 EAELK-KVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQME 451 (503)
Q Consensus 373 EAeLk-kVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~vv~tWinFLedtW~lq~~~~e 451 (503)
-+.|. .+|..+..|+.-.++.+.-|-+||-+...+ +.+ -..
T Consensus 180 n~~l~~~Ln~~~~~a~k~RkkV~~sRL~~D~~R~~~----k~~----------------------------------~~p 221 (289)
T PF10455_consen 180 NKKLQTTLNTDFKKANKARKKVENSRLQFDAARANL----KNK----------------------------------AKP 221 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccc----------------------------------CCc
Confidence 33443 356666666666667777777777654332 221 123
Q ss_pred HHHhhhhHHHhhhHhHHHHHHHHHHHHHHHhhchh
Q 010719 452 LKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPS 486 (503)
Q Consensus 452 ~kekq~~deler~~~~f~~l~~~~ls~~ke~l~~~ 486 (503)
.|+.+...+||..+|-||.-+..-+...++.|+++
T Consensus 222 ekee~~r~~lE~aEDeFv~aTeeAv~~Mk~vl~~~ 256 (289)
T PF10455_consen 222 EKEEQLRVELEQAEDEFVSATEEAVEVMKEVLDNS 256 (289)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 44457788899999999999999888888888875
No 60
>PRK12704 phosphodiesterase; Provisional
Probab=65.43 E-value=1.7e+02 Score=32.39 Aligned_cols=11 Identities=27% Similarity=0.299 Sum_probs=4.5
Q ss_pred hhhHHHhhhHh
Q 010719 456 QVSEELVKHED 466 (503)
Q Consensus 456 q~~deler~~~ 466 (503)
++.+|+.+...
T Consensus 162 ~~~~~~~~~~~ 172 (520)
T PRK12704 162 KVEEEARHEAA 172 (520)
T ss_pred HHHHHHHHHHH
Confidence 34444444333
No 61
>PRK09039 hypothetical protein; Validated
Probab=64.52 E-value=1.9e+02 Score=30.29 Aligned_cols=86 Identities=21% Similarity=0.234 Sum_probs=46.1
Q ss_pred hHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHH----HHhHHHHHHHHHhhHHHHHHhh
Q 010719 337 KEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARL----RNAQEEREQFDEANDQIVEHLK 412 (503)
Q Consensus 337 KEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl----~~~rEERdqFdEAnnqIv~hLk 412 (503)
.=+.|.++-.+...+...-.+|.+++..++++|++|+..++......+.+.+|+ ....+++..+.|++-+| ..|+
T Consensus 65 L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V-~~L~ 143 (343)
T PRK09039 65 LADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQV-ELLN 143 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHH
Confidence 445555666666666666666666666777777777776664433233333333 23455666777766554 2333
Q ss_pred hchhHHHHHHh
Q 010719 413 TKEDELLKSIA 423 (503)
Q Consensus 413 ~KedELsksi~ 423 (503)
.+.+.|-+.++
T Consensus 144 ~qI~aLr~Qla 154 (343)
T PRK09039 144 QQIAALRRQLA 154 (343)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 62
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=64.41 E-value=1.2e+02 Score=31.41 Aligned_cols=55 Identities=24% Similarity=0.391 Sum_probs=34.6
Q ss_pred ccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 010719 347 KANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFD 401 (503)
Q Consensus 347 K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFd 401 (503)
+......-.+++..|+..|+++..+|.+||+++...-......+...++|..+.+
T Consensus 37 ~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 37 EESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp -----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556667778888888888888888888877776666666666555555443
No 63
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=64.30 E-value=1.3e+02 Score=28.74 Aligned_cols=78 Identities=19% Similarity=0.271 Sum_probs=52.1
Q ss_pred HhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH----HHHhhHHHHHHhhhc
Q 010719 339 EALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQ----FDEANDQIVEHLKTK 414 (503)
Q Consensus 339 eAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdq----FdEAnnqIv~hLk~K 414 (503)
.--..|-....++-+.|-..-.|...|..|.+.|+++-+++..++...........|.-.+ |...+..-..-+++.
T Consensus 68 ~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~ 147 (158)
T PF09744_consen 68 REKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKL 147 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334566667788888999999999999999999999999997776655544433332222 444444444444443
Q ss_pred hh
Q 010719 415 ED 416 (503)
Q Consensus 415 ed 416 (503)
.+
T Consensus 148 ~e 149 (158)
T PF09744_consen 148 KE 149 (158)
T ss_pred HH
Confidence 33
No 64
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=64.28 E-value=67 Score=29.75 Aligned_cols=61 Identities=18% Similarity=0.291 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHH----HHHHHH-HHhHHHHHHHHHhhHHHHHHhhh
Q 010719 353 EKEKEIGAEISELVKQRDHLEAELKKVNLSLA----AAQARL-RNAQEEREQFDEANDQIVEHLKT 413 (503)
Q Consensus 353 ~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~----aA~aRl-~~~rEERdqFdEAnnqIv~hLk~ 413 (503)
.+.+++..-|..++.+-.+|+-|+|++-.... .....+ .....||..+.|.-+++.+.|+.
T Consensus 20 ~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~q 85 (131)
T PF11068_consen 20 ELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQ 85 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888999999888887765 333333 56788999999999999988763
No 65
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=63.15 E-value=2.1e+02 Score=33.08 Aligned_cols=74 Identities=27% Similarity=0.344 Sum_probs=49.7
Q ss_pred HHHhhhchHHHhHhhhhhhhhhHHhhhhhhh--------ccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHH
Q 010719 316 SESLSNSSVKAEKRISDHRSQKEEALKVRVV--------KANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQ 387 (503)
Q Consensus 316 sEsLanS~skAEkrI~d~R~QKEeAl~fRv~--------K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~ 387 (503)
-++|...+.+-..||-+. ..|.+.|.-|+. +.-.++.+|++...|+..+..+...|.+.+++++.+++.-.
T Consensus 588 ~~~l~~~ae~LaeR~e~a-~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~ 666 (717)
T PF10168_consen 588 RKSLRESAEKLAERYEEA-KDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQ 666 (717)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334433333333444333 334444544443 23469999999999999999999999999999999988754
Q ss_pred HHH
Q 010719 388 ARL 390 (503)
Q Consensus 388 aRl 390 (503)
..+
T Consensus 667 ~~i 669 (717)
T PF10168_consen 667 RQI 669 (717)
T ss_pred HHH
Confidence 433
No 66
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=62.53 E-value=52 Score=37.88 Aligned_cols=66 Identities=21% Similarity=0.266 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHH
Q 010719 355 EKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLK 420 (503)
Q Consensus 355 Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsk 420 (503)
+.++..-|..|+.++.++|.+...+...+..+.......++++++|++.-..++..++.+..++-+
T Consensus 510 ~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~ 575 (771)
T TIGR01069 510 KEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALK 575 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555556666666666666666666666666666666666666666666666665555444433
No 67
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=62.38 E-value=1.8e+02 Score=29.31 Aligned_cols=113 Identities=26% Similarity=0.353 Sum_probs=72.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhc----hhHHHHHHhhhhhhhhHHHH
Q 010719 359 GAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTK----EDELLKSIAACRVESDVLST 434 (503)
Q Consensus 359 ~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~K----edELsksi~sc~vEA~vv~t 434 (503)
-.+|..|.++..++|.+|+..-..+..|......+-..|.+= .-++-+-|+-| -.||.+=-.=|+-|..
T Consensus 31 Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~s---QrEvn~LLqRK~sWs~~DleRFT~Lyr~dH~---- 103 (207)
T PF05546_consen 31 YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSS---QREVNELLQRKHSWSPADLERFTELYRNDHE---- 103 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcccCCChHHHHHHHHHHHhhhh----
Confidence 357888888888888888887777777777766666666542 22344455553 3356555555554432
Q ss_pred HHHhhHhhHHHhhhHHHHHHhhhhHHHhhh----HhHHHHHHHHHHHHHHHhh--chhhHHHHHH
Q 010719 435 WINFLEDSWVLQCSQMELKEKQVSEELVKH----EDYFVNLAISLLSAYKKEL--GPSISRIGKF 493 (503)
Q Consensus 435 WinFLedtW~lq~~~~e~kekq~~deler~----~~~f~~l~~~~ls~~ke~l--~~~i~~i~~~ 493 (503)
++..+.+...+|+.+ ...|.+|....|..|-||- +.-|-|.-||
T Consensus 104 ---------------~e~~e~~ak~~l~~aE~~~e~~~~~L~~~Il~RYHEEQiWSDKIRr~STw 153 (207)
T PF05546_consen 104 ---------------NEQAEEEAKEALEEAEEKVEEAFDDLMRAILTRYHEEQIWSDKIRRASTW 153 (207)
T ss_pred ---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 345555555555544 3579999999999999874 4445555554
No 68
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=61.60 E-value=3.3e+02 Score=32.10 Aligned_cols=163 Identities=24% Similarity=0.295 Sum_probs=107.8
Q ss_pred HHHHhhhccCcchhhhhhhhHHHHHHHHHhHHhhhccCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 010719 216 FAQTAITGLKMNSDIERIDAEASDLKKRLEGMKALQNSSNEDLEQASEKTTKATIEALKEALAQIRVCTRLEGLLLKKKL 295 (503)
Q Consensus 216 ~aq~AisGLK~nAdiariD~Ea~~L~~kl~~~~~~~~~s~~~~~~~~e~t~~a~~ea~k~al~qiRlcS~lE~lllkkk~ 295 (503)
.|+-||+|.- .-++|+..|++.|+....... .-.+..+ -+=.|||+.|-|+|.-..
T Consensus 11 vaeeav~gwe------kae~e~~~lk~~l~~~~~~~~---~~e~r~~-----hld~aLkec~~qlr~~re---------- 66 (769)
T PF05911_consen 11 VAEEAVSGWE------KAEAEAASLKQQLEAATQQKL---ALEDRVS-----HLDGALKECMRQLRQVRE---------- 66 (769)
T ss_pred HHHHHHhhHH------HHHHHHHHHHHHHHHHHHHhH---HHHHHhh-----hhhHHHHHHHHHHHHhhH----------
Confidence 4889999984 347899999999998763222 1111112 245689999998886432
Q ss_pred ccCCCChhhHHHHhhHHHHHHHHhhhchHHHhHhhhhhhhhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHH
Q 010719 296 LSYGDSPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAE 375 (503)
Q Consensus 296 ~~~Gdspe~ha~kvdkLkvlsEsLanS~skAEkrI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAe 375 (503)
.-|+||-|.- +.|+.|....-.++-..|.++.++.+.+.+|
T Consensus 67 -----------------------------e~eq~i~~~~----------~~~s~e~e~~~~~le~~l~e~~~~l~~~~~e 107 (769)
T PF05911_consen 67 -----------------------------EQEQKIHEAV----------AKKSKEWEKIKSELEAKLAELSKRLAESAAE 107 (769)
T ss_pred -----------------------------HHHHHHHHHH----------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2244444432 2455666666667778888888888888888
Q ss_pred HHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhHHHHHHHhhHhhHHH
Q 010719 376 LKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVL 445 (503)
Q Consensus 376 LkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~vv~tWinFLedtW~l 445 (503)
-..+..+|.+=..-+....|++.+-| +-+..|+.+-+-+.|.+++-+.|.-|+..=+.+--.-+.+
T Consensus 108 ~~~l~~~l~~~~~~i~~l~~~~~~~e----~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~ 173 (769)
T PF05911_consen 108 NSALSKALQEKEKLIAELSEEKSQAE----AEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREY 173 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777666666666677666543 4456778888888888888888888877655544333333
No 69
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=61.49 E-value=50 Score=30.14 Aligned_cols=49 Identities=24% Similarity=0.326 Sum_probs=29.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhh
Q 010719 359 GAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAAC 425 (503)
Q Consensus 359 ~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc 425 (503)
...+.+|.+|||+|++.+..++.+.++..- =+.-|+.|.+|+-+.+.+.
T Consensus 29 K~S~~eL~kqkd~L~~~l~~L~~q~~s~~q------------------r~~eLqaki~ea~~~le~e 77 (107)
T PF09304_consen 29 KTSQGELAKQKDQLRNALQSLQAQNASRNQ------------------RIAELQAKIDEARRNLEDE 77 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHhHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHH
Confidence 355677777888777776666555443332 3445566666666555543
No 70
>PRK10884 SH3 domain-containing protein; Provisional
Probab=60.57 E-value=1.2e+02 Score=29.94 Aligned_cols=8 Identities=13% Similarity=0.293 Sum_probs=2.8
Q ss_pred hHhhhhhh
Q 010719 327 EKRISDHR 334 (503)
Q Consensus 327 EkrI~d~R 334 (503)
|+.+.+.+
T Consensus 99 e~el~~l~ 106 (206)
T PRK10884 99 ENQVKTLT 106 (206)
T ss_pred HHHHHHHH
Confidence 33333333
No 71
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=60.55 E-value=1.3e+02 Score=31.80 Aligned_cols=6 Identities=17% Similarity=0.407 Sum_probs=2.2
Q ss_pred hhhhhh
Q 010719 229 DIERID 234 (503)
Q Consensus 229 diariD 234 (503)
.++||.
T Consensus 112 ~~~rL~ 117 (457)
T TIGR01000 112 QKKSLD 117 (457)
T ss_pred HHHHHH
Confidence 333333
No 72
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=60.40 E-value=1.5e+02 Score=27.85 Aligned_cols=69 Identities=20% Similarity=0.339 Sum_probs=34.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHH------------hHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhh
Q 010719 360 AEISELVKQRDHLEAELKKVNLSLAAAQARLRN------------AQEEREQFDEANDQIVEHLKTKEDELLKSIAACRV 427 (503)
Q Consensus 360 ~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~------------~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~v 427 (503)
.+++.|..+.+.|..++.+++.+|+.--.+++. .|++-..-+--..++-..+.++...|-..|.+-+.
T Consensus 73 ~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~ 152 (177)
T PF07798_consen 73 SEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLKW 152 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555666666655555554443333 33443333333333334445555556666665444
Q ss_pred h
Q 010719 428 E 428 (503)
Q Consensus 428 E 428 (503)
+
T Consensus 153 ~ 153 (177)
T PF07798_consen 153 D 153 (177)
T ss_pred H
Confidence 3
No 73
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=59.96 E-value=2.9e+02 Score=30.91 Aligned_cols=76 Identities=18% Similarity=0.166 Sum_probs=32.9
Q ss_pred HhhHHHHHHHHhhhchHHHhHhhhhhhhhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHH
Q 010719 308 KVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSL 383 (503)
Q Consensus 308 kvdkLkvlsEsLanS~skAEkrI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL 383 (503)
.++.|..--..+.......+..+.....+.+++..=+..-..+....=..+..|...|+++++++++++++.+.++
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l 285 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQL 285 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444445555555555554322111111111112344444555555555555555544444
No 74
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=59.83 E-value=3.1e+02 Score=33.66 Aligned_cols=74 Identities=20% Similarity=0.165 Sum_probs=45.8
Q ss_pred hhhchHHHhHhhhhhhhhhHHhhhhhh---hccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHH
Q 010719 319 LSNSSVKAEKRISDHRSQKEEALKVRV---VKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRN 392 (503)
Q Consensus 319 LanS~skAEkrI~d~R~QKEeAl~fRv---~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~ 392 (503)
+.+-..+-|.||..-+.+-++.-.+|. .+.++.+....|+..+++.|+-..-.++.+-+..|..|..-...+..
T Consensus 400 ~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~d 476 (1141)
T KOG0018|consen 400 ELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLD 476 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Confidence 444556677777777766666666654 57777777777777777777766655555555555544444433333
No 75
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=59.42 E-value=53 Score=36.36 Aligned_cols=88 Identities=23% Similarity=0.345 Sum_probs=49.2
Q ss_pred CCCChhhHHHHhhHHHHHHHHhhhchHHHhHhhhhhhhhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHH
Q 010719 298 YGDSPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELK 377 (503)
Q Consensus 298 ~Gdspe~ha~kvdkLkvlsEsLanS~skAEkrI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLk 377 (503)
-||.|. |+|+-|.-.+-.--.+-+..+.+|+.+|+|=-..|-+-.+-=......|.+|=.++++++++|..++.
T Consensus 53 egDTP~------DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~ 126 (472)
T TIGR03752 53 EGDTPA------DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQ 126 (472)
T ss_pred CCCCcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 367775 44444444444444445555566666665555444444444455556666666666666666666666
Q ss_pred HHhHHHHHHHHHHH
Q 010719 378 KVNLSLAAAQARLR 391 (503)
Q Consensus 378 kVn~sL~aA~aRl~ 391 (503)
+....|.+-..||.
T Consensus 127 ~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 127 QLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666555555553
No 76
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=58.71 E-value=4.2e+02 Score=32.47 Aligned_cols=159 Identities=19% Similarity=0.189 Sum_probs=79.4
Q ss_pred HHHHHHhHHhhhccCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCCChhhHHHHhhHHHHHHHH
Q 010719 239 DLKKRLEGMKALQNSSNEDLEQASEKTTKATIEALKEALAQIRVCTRLEGLLLKKKLLSYGDSPEVHAQKVDKLKVLSES 318 (503)
Q Consensus 239 ~L~~kl~~~~~~~~~s~~~~~~~~e~t~~a~~ea~k~al~qiRlcS~lE~lllkkk~~~~Gdspe~ha~kvdkLkvlsEs 318 (503)
+++++|++.+.. . . ++.+++++.+.+++.-+ .+.++.+.-++.
T Consensus 27 ~iq~~l~~~~~~-~--~--------~~~k~~~~~l~~tl~~l--------------------------~~~~~~~~~~~~ 69 (1109)
T PRK10929 27 QITQELEQAKAA-K--T--------PAQAEIVEALQSALNWL--------------------------EERKGSLERAKQ 69 (1109)
T ss_pred HHHHHHHHhhcC-C--C--------hhhHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHH
Confidence 788888886532 1 1 11224677777776622 366666667777
Q ss_pred hhhchHHHhHhhhhhhhhhHHhhhhhhh---ccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHh--
Q 010719 319 LSNSSVKAEKRISDHRSQKEEALKVRVV---KANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNA-- 393 (503)
Q Consensus 319 LanS~skAEkrI~d~R~QKEeAl~fRv~---K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~-- 393 (503)
+......|.+.+.+.+.|.+. ++-... +.-...+.|. .+..-..+..++..+|...|..++.+..++...
T Consensus 70 ~~~~i~~ap~~~~~~~~~l~~-~~~~~~~~~~~~s~~~Leq----~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq 144 (1109)
T PRK10929 70 YQQVIDNFPKLSAELRQQLNN-ERDEPRSVPPNMSTDALEQ----EILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQ 144 (1109)
T ss_pred HHHHHHHhHHHHHHHHHHHHh-hhcccccccccCCHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchh
Confidence 777888888888877777652 321111 1111233333 333333344455555555555554444444222
Q ss_pred --HHHHHHHHHhhHHHHHHhhhchhHHHH-HHhhhhhhhhHHHHHHHhhH
Q 010719 394 --QEEREQFDEANDQIVEHLKTKEDELLK-SIAACRVESDVLSTWINFLE 440 (503)
Q Consensus 394 --rEERdqFdEAnnqIv~hLk~KedELsk-si~sc~vEA~vv~tWinFLe 440 (503)
.|-|.+-.|.+++. ...+...+.|+. ....-.+|....+.=+++++
T Consensus 145 ~~~~~~~~l~~i~~~L-~~~~~~~~~l~~a~~~~lqae~~~l~~~~~~l~ 193 (1109)
T PRK10929 145 QQTEARRQLNEIERRL-QTLGTPNTPLAQAQLTALQAESAALKALVDELE 193 (1109)
T ss_pred hHHHHHHHHHHHHHHH-hCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333322 111111122222 23445666666666666665
No 77
>PRK02224 chromosome segregation protein; Provisional
Probab=58.34 E-value=3.3e+02 Score=31.04 Aligned_cols=20 Identities=10% Similarity=0.346 Sum_probs=12.1
Q ss_pred HhccCCChhHHHHHHHHHHh
Q 010719 157 MILEAPNEEEISLLLEMFGL 176 (503)
Q Consensus 157 mileaP~eeEvsLLlEiFgl 176 (503)
.++..+..+=..++=++||+
T Consensus 142 ~~l~~~p~~R~~ii~~l~~l 161 (880)
T PRK02224 142 KLINATPSDRQDMIDDLLQL 161 (880)
T ss_pred HHHcCCHHHHHHHHHHHhCC
Confidence 34455555556667777776
No 78
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=58.15 E-value=90 Score=36.07 Aligned_cols=46 Identities=22% Similarity=0.359 Sum_probs=16.9
Q ss_pred HHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHH
Q 010719 365 LVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEH 410 (503)
Q Consensus 365 LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~h 410 (503)
|+.++.++|.+...+...+..+.......++++++|++.-..++..
T Consensus 525 l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~ 570 (782)
T PRK00409 525 LEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEE 570 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333344443333333333
No 79
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=57.46 E-value=28 Score=31.54 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHH
Q 010719 355 EKEIGAEISELVKQRDHLEAELKKVNLSLAAAQA 388 (503)
Q Consensus 355 Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~a 388 (503)
..++..+|..|+++.++|..++.+....+...+.
T Consensus 13 ~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~ 46 (165)
T PF01025_consen 13 IEELEEELEELEKEIEELKERLLRLQAEFENYRK 46 (165)
T ss_dssp HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555666666665555555544443333
No 80
>PRK11637 AmiB activator; Provisional
Probab=56.48 E-value=2.7e+02 Score=29.44 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 010719 353 EKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEER 397 (503)
Q Consensus 353 ~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEER 397 (503)
...+++..+..+|+.++.+++.+.++++........-+.....++
T Consensus 184 ~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~ 228 (428)
T PRK11637 184 AQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSL 228 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444333333333333
No 81
>PRK14143 heat shock protein GrpE; Provisional
Probab=56.04 E-value=1.3e+02 Score=30.39 Aligned_cols=81 Identities=14% Similarity=0.189 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHH-----hHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhH
Q 010719 357 EIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRN-----AQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDV 431 (503)
Q Consensus 357 el~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~-----~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~v 431 (503)
+...++..|+.+.++|+++++....++..+.|-+.| .+|--+..+-|...++..|=-=.|.|.+.+.....+..-
T Consensus 64 ~~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~~~~~ 143 (238)
T PRK14143 64 DNAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERARQQLKPEGEE 143 (238)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccccchh
Confidence 334444444444455555555544444444444333 333344556677777777777788898888766544333
Q ss_pred HHHHHH
Q 010719 432 LSTWIN 437 (503)
Q Consensus 432 v~tWin 437 (503)
..++..
T Consensus 144 ~~~l~~ 149 (238)
T PRK14143 144 AQALHR 149 (238)
T ss_pred HHHHHH
Confidence 333333
No 82
>PRK14151 heat shock protein GrpE; Provisional
Probab=54.96 E-value=1.9e+02 Score=27.95 Aligned_cols=84 Identities=14% Similarity=0.185 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhHHHH
Q 010719 355 EKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLST 434 (503)
Q Consensus 355 Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~vv~t 434 (503)
..++.++|..|+++.++|...+.+..+-..-.+-| ..+|--+..+-|...++..|=-=.|.|.+.+.+...+.+.++.
T Consensus 22 ~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR--~~kE~e~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~~~~~~~ 99 (176)
T PRK14151 22 GDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRR--AEQDVEKAHKFALEKFAGDLLPVVDSLERGLELSSADDEAIKP 99 (176)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhHHH
Confidence 34566778888888888888777666655554433 3344445566677788888888889999988766555555555
Q ss_pred HHHhhH
Q 010719 435 WINFLE 440 (503)
Q Consensus 435 WinFLe 440 (503)
++.=++
T Consensus 100 ~~~Gv~ 105 (176)
T PRK14151 100 MREGVE 105 (176)
T ss_pred HHHHHH
Confidence 554443
No 83
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=54.95 E-value=80 Score=36.45 Aligned_cols=65 Identities=23% Similarity=0.314 Sum_probs=30.2
Q ss_pred cchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhh
Q 010719 350 ESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAA 424 (503)
Q Consensus 350 Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~s 424 (503)
++.+...++..+..++++.+.+|+.++++++..-... +.+..+--++++...+.+.+++-+.+..
T Consensus 531 ~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~----------~~~~~~~a~~~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 531 ELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKL----------LEEAEKEAQQAIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443322111 1122233446666666666666666653
No 84
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=54.69 E-value=6.1e+02 Score=33.09 Aligned_cols=108 Identities=28% Similarity=0.372 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHH---hhhchhHHHHHHhhhhhhhhHH
Q 010719 356 KEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEH---LKTKEDELLKSIAACRVESDVL 432 (503)
Q Consensus 356 kel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~h---Lk~KedELsksi~sc~vEA~vv 432 (503)
+++..|+..|.++.+++|..+.|+....+.+..+++++++|=.++||.++-..-. |..+-.+|.--+..-.-++.-+
T Consensus 932 ~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l 1011 (1930)
T KOG0161|consen 932 RKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSL 1011 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455899999999999999999999999999999999999988888877655432 3333333444444444444444
Q ss_pred HHHHHhhHhhH-HHhhhHHHHHHhhhhHHHhhhH
Q 010719 433 STWINFLEDSW-VLQCSQMELKEKQVSEELVKHE 465 (503)
Q Consensus 433 ~tWinFLedtW-~lq~~~~e~kekq~~deler~~ 465 (503)
+.=.+=||-+= .++..+ .++++.+.|+|+..
T Consensus 1012 ~k~~~kle~~l~~le~~l--e~e~~~r~e~Ek~~ 1043 (1930)
T KOG0161|consen 1012 NKAKAKLEQQLDDLEVTL--EREKRIRMELEKAK 1043 (1930)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 44444443321 233333 34566677777443
No 85
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=54.28 E-value=5.1e+02 Score=32.04 Aligned_cols=44 Identities=27% Similarity=0.258 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHH
Q 010719 355 EKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEERE 398 (503)
Q Consensus 355 Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERd 398 (503)
..+|.++|+.+..+.+++..++...+..+.++..++..+.+.+.
T Consensus 923 ~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~~ 966 (1353)
T TIGR02680 923 VDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKRA 966 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555553
No 86
>PRK14127 cell division protein GpsB; Provisional
Probab=53.78 E-value=22 Score=32.11 Aligned_cols=60 Identities=12% Similarity=0.142 Sum_probs=53.2
Q ss_pred hHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHH
Q 010719 337 KEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEE 396 (503)
Q Consensus 337 KEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEE 396 (503)
|+=--+||+=...||.+---+|..++..|.+...+|+.++..++.+|.....|+...++.
T Consensus 14 KeF~~~~RGYd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~ 73 (109)
T PRK14127 14 KEFKTSMRGYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGASS 73 (109)
T ss_pred CccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 333456899999999999999999999999999999999999999999999998876554
No 87
>PF12455 Dynactin: Dynein associated protein ; InterPro: IPR022157 This domain family is found in eukaryotes, and is approximately 280 amino acids in length. The family is found in association with PF01302 from PFAM. There is a single completely conserved residue E that may be functionally important. Dynactin has been associated with Dynein, a kinesin protein which is involved in organelle transport, mitotic spindle assembly and chromosome segregation. Dynactin anchors Dynein to specific subcellular structures.
Probab=53.77 E-value=63 Score=32.68 Aligned_cols=70 Identities=26% Similarity=0.407 Sum_probs=50.1
Q ss_pred HHHhhHHHHHHhhhchhHHHHHHhhhhhhhh---------------HHHHHHHhhHhhHHHhhhHHHHHHhhhhHHHhhh
Q 010719 400 FDEANDQIVEHLKTKEDELLKSIAACRVESD---------------VLSTWINFLEDSWVLQCSQMELKEKQVSEELVKH 464 (503)
Q Consensus 400 FdEAnnqIv~hLk~KedELsksi~sc~vEA~---------------vv~tWinFLedtW~lq~~~~e~kekq~~deler~ 464 (503)
|--.--..+.+|..=-+-+...+..|.+|.- +|+.||+-|. -.+++|+.--++|+|+
T Consensus 120 ~~~~~~~~L~~l~~~~~rf~~~l~~Cs~E~f~k~g~~~~Em~~~Er~lD~~IdlLk--------~d~LdE~~~~~~L~r~ 191 (274)
T PF12455_consen 120 FACRLIYKLSWLQALCHRFESALSRCSVEQFLKMGGLYPEMEPVERALDSWIDLLK--------KDQLDENTCADELERS 191 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hccccccccHHHHHHH
Confidence 3333444566666667777777777777742 3555666554 4899999999999999
Q ss_pred HhHHHHHHHHHHH
Q 010719 465 EDYFVNLAISLLS 477 (503)
Q Consensus 465 ~~~f~~l~~~~ls 477 (503)
..||-.|.--|+.
T Consensus 192 i~~~~~l~~~~~~ 204 (274)
T PF12455_consen 192 IAYFSHLAEVHLP 204 (274)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999887754
No 88
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=53.16 E-value=3.8e+02 Score=30.23 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=12.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHhH
Q 010719 360 AEISELVKQRDHLEAELKKVNL 381 (503)
Q Consensus 360 ~EI~~LekqrdeLEAeLkkVn~ 381 (503)
.-|+.|..|..+++.+++.+..
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~ 309 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLST 309 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666655554444
No 89
>PRK14154 heat shock protein GrpE; Provisional
Probab=53.08 E-value=2e+02 Score=28.69 Aligned_cols=70 Identities=11% Similarity=0.273 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhh
Q 010719 357 EIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVE 428 (503)
Q Consensus 357 el~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vE 428 (503)
.+..+|..|+++.++|...+.+..+-..-.+.| ..+|--+..+-|...++..|=-=.|.|.+.+..+..+
T Consensus 56 ~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR--~~kE~e~~~~~a~e~~~~~LLpVlDnLeRAL~~~~~~ 125 (208)
T PRK14154 56 KLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKR--IEREKADIIKFGSKQLITDLLPVADSLIHGLESPASE 125 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccc
Confidence 356678888999998888887776665554444 4445555667788778777777789999988765433
No 90
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=53.04 E-value=1.9e+02 Score=26.74 Aligned_cols=29 Identities=28% Similarity=0.472 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHHHH
Q 010719 357 EIGAEISELVKQRDHLEAELKKVNLSLAA 385 (503)
Q Consensus 357 el~~EI~~LekqrdeLEAeLkkVn~sL~a 385 (503)
++..|++.++.+..+++.++...+.....
T Consensus 92 ~l~~el~~l~~~~~~~~~~l~~~~~~~~~ 120 (191)
T PF04156_consen 92 QLQEELDQLQERIQELESELEKLKEDLQE 120 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443333
No 91
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=52.68 E-value=31 Score=29.18 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=26.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHH
Q 010719 359 GAEISELVKQRDHLEAELKKVNLSLAAAQARLRN 392 (503)
Q Consensus 359 ~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~ 392 (503)
..++..|+.+.++|++++..++..++.+.++++-
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~ 102 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEAQIAF 102 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3477788888888888888888888887777653
No 92
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=52.47 E-value=1.4e+02 Score=32.25 Aligned_cols=36 Identities=31% Similarity=0.213 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHh
Q 010719 358 IGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNA 393 (503)
Q Consensus 358 l~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~ 393 (503)
...+|.+|++|.++|++++++++..++++.++++-.
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l 104 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKALAKFL 104 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455889999999999999999999888888887544
No 93
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=51.19 E-value=2.9e+02 Score=28.24 Aligned_cols=31 Identities=39% Similarity=0.578 Sum_probs=14.7
Q ss_pred HHHHHHHhHHHHHHHHHHHhHHHHHHHHHHH
Q 010719 361 EISELVKQRDHLEAELKKVNLSLAAAQARLR 391 (503)
Q Consensus 361 EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~ 391 (503)
++.+|+++...|..++.+....++++..++.
T Consensus 118 ~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e 148 (239)
T COG1579 118 EIEKLEKEIEDLKERLERLEKNLAEAEARLE 148 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444443
No 94
>PRK12704 phosphodiesterase; Provisional
Probab=50.95 E-value=2.1e+02 Score=31.74 Aligned_cols=23 Identities=26% Similarity=0.213 Sum_probs=11.5
Q ss_pred HHhhhhHHHhhhHhHHHHHHHHH
Q 010719 453 KEKQVSEELVKHEDYFVNLAISL 475 (503)
Q Consensus 453 kekq~~deler~~~~f~~l~~~~ 475 (503)
.+++++.+-++...+-+-.+++-
T Consensus 178 ~~~~~~~~a~~~a~~i~~~a~qr 200 (520)
T PRK12704 178 IEEEAKEEADKKAKEILAQAIQR 200 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555444443
No 95
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=50.74 E-value=2.2e+02 Score=31.61 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=8.1
Q ss_pred HhhhhHHHhhhHhHHHHHHH
Q 010719 454 EKQVSEELVKHEDYFVNLAI 473 (503)
Q Consensus 454 ekq~~deler~~~~f~~l~~ 473 (503)
+++++.+-++....-+-.++
T Consensus 173 ~~~~~~~a~~~a~~i~~~ai 192 (514)
T TIGR03319 173 EEEAKEEADKKAKEILATAI 192 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444433333333
No 96
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=50.34 E-value=1.6e+02 Score=34.04 Aligned_cols=88 Identities=19% Similarity=0.221 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhHH
Q 010719 353 EKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVL 432 (503)
Q Consensus 353 ~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~vv 432 (503)
..=+.+..|++.|+...++|.+++-++...|..+..+.+ ++.--+-=+.++....+.|.+.+..-+-+.+-+
T Consensus 429 ~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~--------~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L 500 (652)
T COG2433 429 ETVERLEEENSELKRELEELKREIEKLESELERFRREVR--------DKVRKDREIRARDRRIERLEKELEEKKKRVEEL 500 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567888888888888888888888888887776654 333334445666667777888888888888888
Q ss_pred HHHHHhhHhhHHHhhh
Q 010719 433 STWINFLEDSWVLQCS 448 (503)
Q Consensus 433 ~tWinFLedtW~lq~~ 448 (503)
+.=++.|.+-|.|-.|
T Consensus 501 ~~~l~~l~k~~~lE~s 516 (652)
T COG2433 501 ERKLAELRKMRKLELS 516 (652)
T ss_pred HHHHHHHHHHHhhhhc
Confidence 8889999988887665
No 97
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=49.77 E-value=1.3e+02 Score=30.08 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=22.6
Q ss_pred HHHhhhcCcHHHHHHHHHhHHHHHHHhcc
Q 010719 173 MFGLCLTGGKEVHHAITSSIQDLATAISK 201 (503)
Q Consensus 173 iFglcL~GGkeVh~aivssiqdLA~afs~ 201 (503)
-+|-||+.=.++|..|-+++....++|-.
T Consensus 65 ~lG~~L~~i~~~~r~ie~~l~~~~~~~~~ 93 (223)
T cd07605 65 ELGEALKQIVDTHKSIEASLEQVAKAFHG 93 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777778899998888888777743
No 98
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=49.55 E-value=95 Score=28.63 Aligned_cols=32 Identities=31% Similarity=0.403 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHH
Q 010719 357 EIGAEISELVKQRDHLEAELKKVNLSLAAAQA 388 (503)
Q Consensus 357 el~~EI~~LekqrdeLEAeLkkVn~sL~aA~a 388 (503)
+|..|+..|.+....|+++|+.++..++....
T Consensus 83 ~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el 114 (169)
T PF07106_consen 83 ELREELAELKKEVKSLEAELASLSSEPTNEEL 114 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 34445555555555555555555555544443
No 99
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=49.55 E-value=34 Score=38.24 Aligned_cols=70 Identities=36% Similarity=0.454 Sum_probs=45.0
Q ss_pred HHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchh---HHHHHHhhhhhhhhHHHHHHHhh
Q 010719 363 SELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKED---ELLKSIAACRVESDVLSTWINFL 439 (503)
Q Consensus 363 ~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~Ked---ELsksi~sc~vEA~vv~tWinFL 439 (503)
.-|||||.=|-.=-+|+|-.|+ ----++.|=|-|-|.|..|+|--+|.||. .|.--| .=+..+||||
T Consensus 177 viLekQk~ilDeLr~Kl~lnl~---i~~lsteelr~qVD~A~~q~VnP~k~KeQLV~QLkTQI-------tDLErFInFl 246 (621)
T KOG3759|consen 177 VILEKQKAILDELREKLELNLD---IDKLSTEELRRQVDDALKQLVNPFKEKEQLVDQLKTQI-------TDLERFINFL 246 (621)
T ss_pred HHHHHHHHHHHHHHHHhhccCC---cccccHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 3477887665555566666665 22336888999999999888766666652 232233 2345678888
Q ss_pred Hhh
Q 010719 440 EDS 442 (503)
Q Consensus 440 edt 442 (503)
-|.
T Consensus 247 Q~e 249 (621)
T KOG3759|consen 247 QDE 249 (621)
T ss_pred HHh
Confidence 653
No 100
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=49.53 E-value=1.7e+02 Score=27.56 Aligned_cols=51 Identities=24% Similarity=0.285 Sum_probs=37.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhh
Q 010719 372 LEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACR 426 (503)
Q Consensus 372 LEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~ 426 (503)
|++++-.+...++.-..-|.+.+.|++- -++.+...|.|.+||..+..+|.
T Consensus 57 L~~el~~lt~el~~L~~EL~~l~sEk~~----L~k~lq~~q~kv~eLE~~~~~~~ 107 (140)
T PF10473_consen 57 LEEELEELTSELNQLELELDTLRSEKEN----LDKELQKKQEKVSELESLNSSLE 107 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHH
Confidence 5555555666666666667788888854 46788888999999999888775
No 101
>PF12889 DUF3829: Protein of unknown function (DUF3829); InterPro: IPR024291 This is a small family of proteins from several bacterial species, whose function is not known. It may, however, be related to the GvpL_GvpF family of proteins (PF06386 from PFAM).; PDB: 3RH3_B 3IEE_A.
Probab=49.07 E-value=1e+02 Score=29.63 Aligned_cols=75 Identities=21% Similarity=0.331 Sum_probs=45.7
Q ss_pred hcCcHHHHHHHHHhHHHHHHHhccchhh-------hccC---------------hHHHHHHHHHhhhcc----Ccchhhh
Q 010719 178 LTGGKEVHHAITSSIQDLATAISKYQDE-------VLVK---------------REELLQFAQTAITGL----KMNSDIE 231 (503)
Q Consensus 178 L~GGkeVh~aivssiqdLA~afs~y~DE-------vLvk---------------ReELlq~aq~AisGL----K~nAdia 231 (503)
+.+|+++|..++..++....++..|... ..-+ ..+++.-++..+..+ ..+.|+.
T Consensus 109 ~ak~kelh~~l~~~~~~~~~a~~~~~~~l~~~~~~~~~~~l~~lk~~g~~~~y~~~~~~~~a~~i~~~l~~~~~~~~d~~ 188 (276)
T PF12889_consen 109 FAKAKELHAKLLAAYEEFKAAYDAFDAALEKINDERRKEQLEALKKEGKMIIYYMLKLMIDAEQIIDELQSDDNQKFDMA 188 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------TTTTTHHHHHHHHHHHHHHHHHHHHHT-TTS--HHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHH
Confidence 3479999999999999977777666554 2211 134555577776666 3446777
Q ss_pred hhhhHHHHHHHHHhHHhhhcc
Q 010719 232 RIDAEASDLKKRLEGMKALQN 252 (503)
Q Consensus 232 riD~Ea~~L~~kl~~~~~~~~ 252 (503)
.++..+.++.+-+...+....
T Consensus 189 ~~~~~l~~~~~~~~~~~~~~~ 209 (276)
T PF12889_consen 189 ALDAALAELEKLLKDLKKLTK 209 (276)
T ss_dssp HHH--HHHHHHHHHHHHTS--
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 777666666666666664333
No 102
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=48.62 E-value=2.5e+02 Score=27.45 Aligned_cols=88 Identities=15% Similarity=0.219 Sum_probs=47.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhh---hHHHHHH
Q 010719 360 AEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVES---DVLSTWI 436 (503)
Q Consensus 360 ~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA---~vv~tWi 436 (503)
+.|..+|.-.++||++|.|++....+...-=++-----..|--+-+....+ |.-.. +.++...
T Consensus 2 ~~~~~~E~~~~~le~~l~kl~K~~~~~~d~g~~~~~a~~~F~~~l~d~~~~--------------~~gd~~i~~~L~kF~ 67 (200)
T cd07637 2 ATIDEVETDVVEIEAKLDKLVKLCSGMIEAGKAYATTNKLFVSGIRDLSQQ--------------CKKDEMISECLDKFG 67 (200)
T ss_pred chHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------cCCchHHHHHHHHHH
Confidence 457888889999999999987765543321111111122232222222222 22222 2346777
Q ss_pred HhhHhhHHHhhhHHHHHHhhhhHHH
Q 010719 437 NFLEDSWVLQCSQMELKEKQVSEEL 461 (503)
Q Consensus 437 nFLedtW~lq~~~~e~kekq~~del 461 (503)
..|.+.|..+.....+=+.-+.+-|
T Consensus 68 ~~l~ei~~~~~~l~~q~e~~l~~pL 92 (200)
T cd07637 68 DSLQEMVNYHMILFDQAQRSVRQQL 92 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888777666654444444443
No 103
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=48.49 E-value=2.1e+02 Score=25.80 Aligned_cols=110 Identities=22% Similarity=0.304 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHH--HH-HHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhHH
Q 010719 356 KEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEE--RE-QFDEANDQIVEHLKTKEDELLKSIAACRVESDVL 432 (503)
Q Consensus 356 kel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEE--Rd-qFdEAnnqIv~hLk~KedELsksi~sc~vEA~vv 432 (503)
..+.+||..+..+.+..+.++..+...+..-+.....++.- |. +=...--+.+..|+..-.++...|..-+.+++..
T Consensus 6 ~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a 85 (132)
T PF07926_consen 6 SSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESA 85 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778888888888888777777776666665555542 22 2233446778888999999999999999999999
Q ss_pred HHHHHhhHhhHHHhhhHHHHHHhhhhHHHhhhHhHHHHHH
Q 010719 433 STWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLA 472 (503)
Q Consensus 433 ~tWinFLedtW~lq~~~~e~kekq~~deler~~~~f~~l~ 472 (503)
+.=+.=.+..|.-|- +....|+..+...+-.|-
T Consensus 86 ~~~l~~~e~sw~~qk-------~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 86 KAELEESEASWEEQK-------EQLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 999999999997663 344455555444444443
No 104
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=48.47 E-value=1.1e+02 Score=34.65 Aligned_cols=71 Identities=28% Similarity=0.401 Sum_probs=44.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhHHHHHHHhh
Q 010719 360 AEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFL 439 (503)
Q Consensus 360 ~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~vv~tWinFL 439 (503)
.-|..-.+.+.+++.+++++.-.++.+..++..+..+|..+.+=.. +.-..+..-.+|-..++.||+.|
T Consensus 99 ~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~-----------~~~~~l~~leAe~~~~krr~~~l 167 (546)
T KOG0977|consen 99 KLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLD-----------DYLSRLSELEAEINTLKRRIKAL 167 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHH-----------HHhhhhhhhhhHHHHHHHHHHHH
Confidence 3455556677777777777777788888888888777777766433 33334444444445555555555
Q ss_pred Hh
Q 010719 440 ED 441 (503)
Q Consensus 440 ed 441 (503)
||
T Consensus 168 e~ 169 (546)
T KOG0977|consen 168 ED 169 (546)
T ss_pred HH
Confidence 54
No 105
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=48.25 E-value=5.2e+02 Score=30.37 Aligned_cols=128 Identities=25% Similarity=0.237 Sum_probs=94.9
Q ss_pred chHHHHHH-HHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchh-----HH----H-
Q 010719 351 SSEKEKEI-GAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKED-----EL----L- 419 (503)
Q Consensus 351 v~~~Ekel-~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~Ked-----EL----s- 419 (503)
|+-+=-|| ..||+.|++|.-+.|.|=.-+...|-.++.-|..++.+=..|.+-.+....||++--. |. .
T Consensus 255 v~DLfSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~ 334 (717)
T PF09730_consen 255 VSDLFSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDS 334 (717)
T ss_pred cchhhhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 44455555 5799999999999999999999999999999999999999999988888777765433 00 0
Q ss_pred -------------------HHHhhhhhhhhHHHHHHHhhHhhHHHhhhHHHHHHhhhhHHHhhhHhHHHHHHHHHHHHHH
Q 010719 420 -------------------KSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYK 480 (503)
Q Consensus 420 -------------------ksi~sc~vEA~vv~tWinFLedtW~lq~~~~e~kekq~~deler~~~~f~~l~~~~ls~~k 480 (503)
-.|=.|+-. .+|.--+..-.+-|.|-..|.+.++ +..++..++.+.+-+|...+.+.=+
T Consensus 335 ~~~~~s~~d~~~ye~Di~~~eiLe~Ky~-vav~Ev~~Lk~ELk~Lk~k~~~~~~-~~~~ek~~~~~e~q~L~ekl~~lek 412 (717)
T PF09730_consen 335 EKERDSHEDGDYYEVDINGLEILECKYK-VAVSEVIQLKAELKALKSKYNELEE-RYKQEKDRLESEVQNLKEKLMSLEK 412 (717)
T ss_pred ccccccccccchhhhccccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012234444 3444455557788999999988887 6667888888888888777766533
No 106
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=47.77 E-value=2.5e+02 Score=26.66 Aligned_cols=83 Identities=25% Similarity=0.337 Sum_probs=53.7
Q ss_pred hhhchHHHhHhhhhhhhhhHHhhhh-hhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 010719 319 LSNSSVKAEKRISDHRSQKEEALKV-RVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEER 397 (503)
Q Consensus 319 LanS~skAEkrI~d~R~QKEeAl~f-Rv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEER 397 (503)
|..-...+++.|.+.-.|=+.||.- |..-..+.-.--..+..++..|+.+.+.+..+..++..++.....++..++.+|
T Consensus 56 le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~ 135 (221)
T PF04012_consen 56 LERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKR 135 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555566543 333334444444666777788888888888888888888888888888877777
Q ss_pred HHHH
Q 010719 398 EQFD 401 (503)
Q Consensus 398 dqFd 401 (503)
+.+-
T Consensus 136 ~~l~ 139 (221)
T PF04012_consen 136 EELK 139 (221)
T ss_pred HHHH
Confidence 6653
No 107
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=46.84 E-value=80 Score=34.55 Aligned_cols=53 Identities=26% Similarity=0.278 Sum_probs=41.1
Q ss_pred cchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHH-HHHHH
Q 010719 350 ESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEER-EQFDE 402 (503)
Q Consensus 350 Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEER-dqFdE 402 (503)
.+..--|++..||..++.|+-+.++.|++++..+.....++...+.++ .||+-
T Consensus 63 kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~ 116 (420)
T COG4942 63 KLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRR 116 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344455677789999999999999999999999999998888876554 55543
No 108
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=46.37 E-value=1.2e+02 Score=31.39 Aligned_cols=67 Identities=27% Similarity=0.407 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHH---HHHhhhchhHHHHH
Q 010719 355 EKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQI---VEHLKTKEDELLKS 421 (503)
Q Consensus 355 Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqI---v~hLk~KedELsks 421 (503)
-.++..-++++.+.+.+|..+|......+++-+-|++..+-|..|.+|--.-. +..|+++-|||.--
T Consensus 137 ~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 137 YEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 33444456667777777777777777778888888888888877777654432 34566666666543
No 109
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=45.93 E-value=83 Score=24.84 Aligned_cols=52 Identities=31% Similarity=0.398 Sum_probs=31.8
Q ss_pred HHhHhhhhhhhhhHHhhhhhhhccccchHHHHHH---HHHHHHHHHhHHHHHHHHHHH
Q 010719 325 KAEKRISDHRSQKEEALKVRVVKANESSEKEKEI---GAEISELVKQRDHLEAELKKV 379 (503)
Q Consensus 325 kAEkrI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel---~~EI~~LekqrdeLEAeLkkV 379 (503)
+-++|..-|| +-|-.||.+|-..+..+|..+ ..|...|.++.+.|..++..+
T Consensus 5 k~~~rr~rNR---~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 5 KRERRRERNR---EAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp CHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554 578899999999888877643 344444555444444444433
No 110
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=45.64 E-value=1.3e+02 Score=29.46 Aligned_cols=34 Identities=12% Similarity=0.241 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHH
Q 010719 355 EKEIGAEISELVKQRDHLEAELKKVNLSLAAAQA 388 (503)
Q Consensus 355 Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~a 388 (503)
++.....|+.+..++.+|.+++..++..+.....
T Consensus 37 ~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~ 70 (251)
T PF11932_consen 37 AQQSQKRIDQWDDEKQELLAEYRQLEREIENLEV 70 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555554444433
No 111
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=45.22 E-value=1.9e+02 Score=33.53 Aligned_cols=18 Identities=11% Similarity=0.436 Sum_probs=7.8
Q ss_pred HHHHHhhhchhHHHHHHh
Q 010719 406 QIVEHLKTKEDELLKSIA 423 (503)
Q Consensus 406 qIv~hLk~KedELsksi~ 423 (503)
+++...+.+.+++-+.+.
T Consensus 572 ~~~~~a~~~~~~~i~~lk 589 (771)
T TIGR01069 572 EALKALKKEVESIIRELK 589 (771)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 112
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=44.99 E-value=33 Score=28.85 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHH
Q 010719 369 RDHLEAELKKVNLSLAAAQARLRNAQEE 396 (503)
Q Consensus 369 rdeLEAeLkkVn~sL~aA~aRl~~~rEE 396 (503)
.++|+.++||.|+...++.+.||+.-|+
T Consensus 4 ~~eLk~evkKL~~~A~~~kmdLHDLaEd 31 (66)
T PF05082_consen 4 IEELKKEVKKLNRKATQAKMDLHDLAED 31 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4689999999999999999999998886
No 113
>PRK09465 tolC outer membrane channel protein; Reviewed
Probab=44.78 E-value=2.7e+02 Score=28.31 Aligned_cols=84 Identities=10% Similarity=0.120 Sum_probs=57.6
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhh
Q 010719 351 SSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESD 430 (503)
Q Consensus 351 v~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~ 430 (503)
+......+..++...-.+...+..+++-....+..|...++.+ +.+|..+..-+++.|.++.+-+.....--.+..+
T Consensus 333 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~y~~G~~~~~dvl~a~~~l~~a~~~~~~a~~~ 409 (446)
T PRK09465 333 LESAHRSVVQTVRSSFNNINASISSINAYEQAVVSAQSSLDAT---EAGYEVGTRTIVDVLDATTTLYDAKQQLSNARYN 409 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666566666666666666666555555544 6788888889999998888877777777777777
Q ss_pred HHHHHHH
Q 010719 431 VLSTWIN 437 (503)
Q Consensus 431 vv~tWin 437 (503)
...+++.
T Consensus 410 ~~~a~~~ 416 (446)
T PRK09465 410 YLINQLN 416 (446)
T ss_pred HHHHHHH
Confidence 7777644
No 114
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=44.72 E-value=1.1e+02 Score=33.96 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=17.0
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHH
Q 010719 351 SSEKEKEIGAEISELVKQRDHLEAELKKVNLSL 383 (503)
Q Consensus 351 v~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL 383 (503)
|+....++..|+..|..++.+|...|..+..+|
T Consensus 107 v~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 107 VQSETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555554444
No 115
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=42.95 E-value=44 Score=27.29 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=19.9
Q ss_pred HHHhHHHHHHHHHHHhHHHHHHHHHHHH
Q 010719 365 LVKQRDHLEAELKKVNLSLAAAQARLRN 392 (503)
Q Consensus 365 LekqrdeLEAeLkkVn~sL~aA~aRl~~ 392 (503)
+|.|...||.+|...+..+.+|..|++.
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~~ 57 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAKQ 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777777777766654
No 116
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=42.68 E-value=2.5e+02 Score=25.21 Aligned_cols=83 Identities=19% Similarity=0.216 Sum_probs=48.8
Q ss_pred HHHHHHHHhhhchHHHhHhhhhhhhhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHH
Q 010719 311 KLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARL 390 (503)
Q Consensus 311 kLkvlsEsLanS~skAEkrI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl 390 (503)
+++.+-+.......+......|...|..-+-.....=.+||..- .+...+|..|.++..++..++..+...+.+|...|
T Consensus 11 e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~H-a~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l 89 (132)
T PF07926_consen 11 ELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKH-AEDIKELQQLREELQELQQEINELKAEAESAKAEL 89 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555666666665554444434444322 23356777777777777777777777777777777
Q ss_pred HHhH
Q 010719 391 RNAQ 394 (503)
Q Consensus 391 ~~~r 394 (503)
...+
T Consensus 90 ~~~e 93 (132)
T PF07926_consen 90 EESE 93 (132)
T ss_pred HHHH
Confidence 5443
No 117
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=41.87 E-value=2.6e+02 Score=25.65 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=14.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhHH
Q 010719 359 GAEISELVKQRDHLEAELKKVNLS 382 (503)
Q Consensus 359 ~~EI~~LekqrdeLEAeLkkVn~s 382 (503)
..|+..|+++||+|.+|+-+.-..
T Consensus 36 ~~el~~l~~~r~~l~~Eiv~l~~~ 59 (120)
T PF12325_consen 36 QEELARLEAERDELREEIVKLMEE 59 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666554333
No 118
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=41.52 E-value=6.3e+02 Score=29.40 Aligned_cols=220 Identities=23% Similarity=0.302 Sum_probs=119.2
Q ss_pred HHHHHHhhhcc-CcchhhhhhhhHHHHHHHHHhHHhhhccCCchhhhhhhhh-----hhH----HHHHHHHHHHHHHHHH
Q 010719 214 LQFAQTAITGL-KMNSDIERIDAEASDLKKRLEGMKALQNSSNEDLEQASEK-----TTK----ATIEALKEALAQIRVC 283 (503)
Q Consensus 214 lq~aq~AisGL-K~nAdiariD~Ea~~L~~kl~~~~~~~~~s~~~~~~~~e~-----t~~----a~~ea~k~al~qiRlc 283 (503)
=+..+.++..+ ++.-|+.++=.|+..|+.++..+...-.....+...+=.. +.+ +..++++||=.=-.|+
T Consensus 55 e~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~~w~~l~ 134 (766)
T PF10191_consen 55 EETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEADNWSTLS 134 (766)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33445555555 8888999999999999999988873221111100000000 000 1233445554447777
Q ss_pred hhhhhhhhhhhhccCCCChhhHHHHhhHHHHHHHHhhhchHHHhHhhhhhhhhhHHhhhhhhhccccchHHHHHHHHHHH
Q 010719 284 TRLEGLLLKKKLLSYGDSPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEIS 363 (503)
Q Consensus 284 S~lE~lllkkk~~~~Gdspe~ha~kvdkLkvlsEsLanS~skAEkrI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~ 363 (503)
+.++.++- .||-+. .-+||.-+..||.-=.--.|- +.|++.-++++
T Consensus 135 ~~v~~~~~------~~d~~~----~a~~l~~m~~sL~~l~~~pd~---~~r~~~le~l~--------------------- 180 (766)
T PF10191_consen 135 AEVDDLFE------SGDIAK----IADRLAEMQRSLAVLQDVPDY---EERRQQLEALK--------------------- 180 (766)
T ss_pred HHHHHHHh------cCCHHH----HHHHHHHHHHHHHHHcCCCch---hHHHHHHHHHH---------------------
Confidence 77777553 355442 344555544454422111111 12333333443
Q ss_pred HHHHhHHHHHHHHHHHhHHHHHHHHHH--HHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhHHHHHHHhhHh
Q 010719 364 ELVKQRDHLEAELKKVNLSLAAAQARL--RNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLED 441 (503)
Q Consensus 364 ~LekqrdeLEAeLkkVn~sL~aA~aRl--~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~vv~tWinFLed 441 (503)
+.||+.+. .+|-+|-.+. ..++.=++-|. .+ -.+++|.+--..|+. +.++..|=.|...
T Consensus 181 ------nrLEa~vs---p~Lv~al~~~~~~~~~~~~~if~--------~i-~R~~~l~~~Y~~~r~-~~l~~~W~~~~~~ 241 (766)
T PF10191_consen 181 ------NRLEALVS---PQLVQALNSRDVDAAKEYVKIFS--------SI-GREPQLEQYYCKCRK-APLQRLWQEYCQS 241 (766)
T ss_pred ------HHHHHHhh---HHHHHHHHhcCHHHHHHHHHHHH--------Hc-CCHHHHHHHHHHHHH-HHHHHHHHHHhhh
Confidence 34454433 3333333221 12222222222 22 467888888888888 5789999999877
Q ss_pred h------HHHhhhHHHHHHhhhhHHHhhhHhHHHHHHH---HHHHHHHHhhchhh
Q 010719 442 S------WVLQCSQMELKEKQVSEELVKHEDYFVNLAI---SLLSAYKKELGPSI 487 (503)
Q Consensus 442 t------W~lq~~~~e~kekq~~deler~~~~f~~l~~---~~ls~~ke~l~~~i 487 (503)
. -.|++.|.+.-. -.+.|+.-|..-|=+-.. .+|..--.-|.|+|
T Consensus 242 ~~~~~~~~~L~~fyd~ll~-~l~~E~~w~~~vF~~~~~~~~~ll~~~L~~L~PS~ 295 (766)
T PF10191_consen 242 DQSQSFAEWLPSFYDELLS-LLHQELKWCSQVFPDESPVLPKLLAETLSALQPSF 295 (766)
T ss_pred ccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCccH
Confidence 6 235888888764 478899999888876333 44444344455555
No 119
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=41.16 E-value=4.4e+02 Score=27.53 Aligned_cols=39 Identities=23% Similarity=0.474 Sum_probs=25.2
Q ss_pred HHHHHHhhhcCcHHHHHHHHHhHHHHHHHhccchhhhccChHHHHH
Q 010719 170 LLEMFGLCLTGGKEVHHAITSSIQDLATAISKYQDEVLVKREELLQ 215 (503)
Q Consensus 170 LlEiFglcL~GGkeVh~aivssiqdLA~afs~y~DEvLvkReELlq 215 (503)
++|++--|| +|+.+-|-.+ =..|..+..++.+.-+.|.+
T Consensus 64 ~LElY~~sC---~EL~~~I~eg----r~~~~~~E~et~~~nPpLF~ 102 (312)
T smart00787 64 LLELYQFSC---KELKKYISEG----RDLFKEIEEETLINNPPLFK 102 (312)
T ss_pred HHHHHHHHH---HHHHHHHHHH----HHHHHHHHHHHhhcCcHHHH
Confidence 678888766 4555554444 44778888888866655654
No 120
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=40.92 E-value=2.2e+02 Score=26.04 Aligned_cols=43 Identities=16% Similarity=0.291 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH
Q 010719 358 IGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQF 400 (503)
Q Consensus 358 l~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqF 400 (503)
+.+.|..+|-.+..|..+++++...=..++.-+-...++-+..
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444
No 121
>PRK14162 heat shock protein GrpE; Provisional
Probab=40.49 E-value=2.5e+02 Score=27.64 Aligned_cols=67 Identities=18% Similarity=0.263 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhh
Q 010719 358 IGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACR 426 (503)
Q Consensus 358 l~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~ 426 (503)
+..+|..|+++.++|...+.+..+-.--.+ .+..+|--+..+-|...++..|=-=.|.|.+.+..+.
T Consensus 44 l~~~l~~l~~e~~elkd~~lR~~AEfeN~r--kR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~ 110 (194)
T PRK14162 44 LEKEIADLKAKNKDLEDKYLRSQAEIQNMQ--NRYAKERAQLIKYESQSLAKDVLPAMDNLERALAVKA 110 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccc
Confidence 444555555555555555544444333322 2233344445566777777777777888998887653
No 122
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=40.37 E-value=4.6e+02 Score=27.54 Aligned_cols=54 Identities=26% Similarity=0.361 Sum_probs=30.8
Q ss_pred hhhhhhHHHHHHHHHhHHhhhccCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 010719 230 IERIDAEASDLKKRLEGMKALQNSSNEDLEQASEKTTKATIEALKEALAQIRVCTR 285 (503)
Q Consensus 230 iariD~Ea~~L~~kl~~~~~~~~~s~~~~~~~~e~t~~a~~ea~k~al~qiRlcS~ 285 (503)
+.||=.|+.+|++++..+......+. ..+.+......-++.+++.|..+++-..
T Consensus 96 l~RL~~Ev~EL~eEl~~~~~~~~~~~--~e~~~~~~l~~~~~~L~~~L~~l~l~~~ 149 (388)
T PF04912_consen 96 LQRLRREVEELKEELEKRKADSKESD--EEKISPEELAQQLEELSKQLDSLKLEEL 149 (388)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccc--cccCChhhHHHHHHHHHHHHHHhhcccc
Confidence 67888888888888877764333221 1111111112346777777777755443
No 123
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=40.19 E-value=1.2e+02 Score=31.40 Aligned_cols=55 Identities=20% Similarity=0.378 Sum_probs=40.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhH
Q 010719 359 GAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDE 417 (503)
Q Consensus 359 ~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedE 417 (503)
..|+..++...++.|++++.+...+++..+||..+..+|..-. ..+..++.|++-
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~----k~~~~~~sKV~k 260 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLS----KTIKSIKSKVEK 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 3455555666677788999999999999999999999887543 445555666553
No 124
>PF15456 Uds1: Up-regulated During Septation
Probab=40.08 E-value=2.2e+02 Score=26.21 Aligned_cols=100 Identities=17% Similarity=0.237 Sum_probs=69.1
Q ss_pred HhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHH
Q 010719 339 EALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDEL 418 (503)
Q Consensus 339 eAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedEL 418 (503)
|+..|-+=...||.+. .-|+..|..|.+-+..-|+ +.+++-.|..++...----. -..+....+++..+.+|
T Consensus 12 ds~~feiLs~eEVe~L----KkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~---~~~~~~~~~~~~~eeel 83 (124)
T PF15456_consen 12 DSKEFEILSFEEVEEL----KKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSS---RRARFSRESSLKAEEEL 83 (124)
T ss_pred HHHcCcccCHHHHHHH----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCc---cccCCCcchHHHHHHHH
Confidence 5667777777777654 4577889999999999988 88888777766655410000 00455667788889999
Q ss_pred HHHHhhhhhhhhHHHHHHHhhHhhHHHhhhHHHHHHhh
Q 010719 419 LKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQ 456 (503)
Q Consensus 419 sksi~sc~vEA~vv~tWinFLedtW~lq~~~~e~kekq 456 (503)
..+-++|. .|++ +-|.+..-..+...+-
T Consensus 84 ~~~~rk~e-------e~~~---eL~~le~R~~~~~~rL 111 (124)
T PF15456_consen 84 AESDRKCE-------ELAQ---ELWKLENRLAEVRQRL 111 (124)
T ss_pred HHHHhhHH-------HHHH---HHHHHHHHHHHHHHHH
Confidence 99999985 3443 5677777777666553
No 125
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=40.02 E-value=6.5e+02 Score=29.16 Aligned_cols=78 Identities=22% Similarity=0.188 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhHHH
Q 010719 354 KEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLS 433 (503)
Q Consensus 354 ~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~vv~ 433 (503)
.+.....+...++.....+..+|..|-.+...+...++.++++|+-|.+-.. -..++.+-+..+.-.-...+
T Consensus 169 ~~~~~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~--------~~~~~~~~~~~l~~~~~~~~ 240 (670)
T KOG0239|consen 169 LLDLALKESLKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLG--------NYADLRRNIKPLEGLESTIK 240 (670)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--------hhhhHHHhhhhhhhhhhHHH
Confidence 5666677777788888888888888888888888888899999998887655 34455566666667777777
Q ss_pred HHHHhh
Q 010719 434 TWINFL 439 (503)
Q Consensus 434 tWinFL 439 (503)
.||+-|
T Consensus 241 ~~i~~l 246 (670)
T KOG0239|consen 241 KKIQAL 246 (670)
T ss_pred HHHHHH
Confidence 775544
No 126
>PRK11281 hypothetical protein; Provisional
Probab=39.80 E-value=8.1e+02 Score=30.18 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=15.9
Q ss_pred hhHHHHHHhhhchhHHHHHHhhhhhhhhHHHHHH
Q 010719 403 ANDQIVEHLKTKEDELLKSIAACRVESDVLSTWI 436 (503)
Q Consensus 403 AnnqIv~hLk~KedELsksi~sc~vEA~vv~tWi 436 (503)
+|++-.+-++.+-|.+.+.|..-..+-..+.+=|
T Consensus 217 ~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~i 250 (1113)
T PRK11281 217 GNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAI 250 (1113)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555544444333333333
No 127
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=39.77 E-value=3.9e+02 Score=26.49 Aligned_cols=128 Identities=20% Similarity=0.220 Sum_probs=59.1
Q ss_pred HHHHHHhhhchHHHhHhhhhhhhhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHH
Q 010719 313 KVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRN 392 (503)
Q Consensus 313 kvlsEsLanS~skAEkrI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~ 392 (503)
..|=.-|++=+.+.=..-.+|+.=..+--.++.++..+++..-.-...||..|.++.|++-.+-.++...+..+...+..
T Consensus 7 ~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~ 86 (312)
T PF00038_consen 7 QSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELED 86 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHH
Confidence 33444455555555444445544444555566666777766666666666666666666665555555555544444444
Q ss_pred hHHHHHHHHHhhHH---HHHHhhhchhHHHHHHhhhhhhhhHHHHHHHhhH
Q 010719 393 AQEEREQFDEANDQ---IVEHLKTKEDELLKSIAACRVESDVLSTWINFLE 440 (503)
Q Consensus 393 ~rEERdqFdEAnnq---Iv~hLk~KedELsksi~sc~vEA~vv~tWinFLe 440 (503)
.+..-+..-..... =+..|+.-.|+..........+...+..=|+||.
T Consensus 87 ~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 87 LRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 33222222111111 1334444455555555555555555555566654
No 128
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=39.54 E-value=18 Score=31.22 Aligned_cols=58 Identities=19% Similarity=0.272 Sum_probs=39.3
Q ss_pred hHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhH
Q 010719 337 KEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQ 394 (503)
Q Consensus 337 KEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~r 394 (503)
|+=...||+=...||..--..|..++..|.++.++|..++..++..|.....+-...+
T Consensus 9 ~~F~~~~rGYd~~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~ 66 (131)
T PF05103_consen 9 KEFKKSMRGYDPDEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQ 66 (131)
T ss_dssp ----EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------------
T ss_pred CccCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 3334567888889999999999999999999999999999999999888765544433
No 129
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=39.28 E-value=6.3e+02 Score=28.82 Aligned_cols=90 Identities=24% Similarity=0.276 Sum_probs=60.1
Q ss_pred ccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhh
Q 010719 347 KANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACR 426 (503)
Q Consensus 347 K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~ 426 (503)
+-.++...-+++..||..-+....+|..++++.+-..+ |..|-.=--.||--++.+.+|+.|-+..-
T Consensus 448 ~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~------------Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DT- 514 (594)
T PF05667_consen 448 EIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVN------------RSAYTRRILEIVKNIRKQKEEIEKILSDT- 514 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHH-
Confidence 33455566667777777777777777777777665543 66666666788999999999988866533
Q ss_pred hhhhHHHHHHHhhHhhHHHhhhHHHHHH
Q 010719 427 VESDVLSTWINFLEDSWVLQCSQMELKE 454 (503)
Q Consensus 427 vEA~vv~tWinFLedtW~lq~~~~e~ke 454 (503)
-.|..=||-|.+ +|..+|+...|
T Consensus 515 ---r~lQkeiN~l~g--kL~RtF~v~dE 537 (594)
T PF05667_consen 515 ---RELQKEINSLTG--KLDRTFTVTDE 537 (594)
T ss_pred ---HHHHHHHHHHHH--HHHhHHHHHHH
Confidence 346666777666 35566655444
No 130
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=38.98 E-value=3.8e+02 Score=26.16 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=12.4
Q ss_pred HHHHHhhhchhHHHHHHhhhhhh
Q 010719 406 QIVEHLKTKEDELLKSIAACRVE 428 (503)
Q Consensus 406 qIv~hLk~KedELsksi~sc~vE 428 (503)
.-|..||+..+.+..++..++-+
T Consensus 159 ~ei~~lks~~~~l~~~~~~~e~~ 181 (190)
T PF05266_consen 159 KEISRLKSEAEALKEEIENAELE 181 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555443
No 131
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=38.38 E-value=2.9e+02 Score=24.65 Aligned_cols=92 Identities=20% Similarity=0.232 Sum_probs=60.7
Q ss_pred hHHHHhhHHHHHHHHhhhchHHHhHhhhhhhhhhHHhhhhhhhc---------c--------------------------
Q 010719 304 VHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVK---------A-------------------------- 348 (503)
Q Consensus 304 ~ha~kvdkLkvlsEsLanS~skAEkrI~d~R~QKEeAl~fRv~K---------~-------------------------- 348 (503)
...+...+|+..-+.|..+....+..|.+++.=++.--.+...+ +
T Consensus 10 ~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~g~~vE 89 (140)
T PRK03947 10 ELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGAGYSAE 89 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCCCEEEE
Confidence 34456777888888888888888888888876663322222111 1
Q ss_pred ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 010719 349 NESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQE 395 (503)
Q Consensus 349 ~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rE 395 (503)
-.+.++.+.+..-|..|+++.+.|+.+|.+++..++.-...+.....
T Consensus 90 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 90 KDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 04566677777777777777777777777777777666666555443
No 132
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=37.08 E-value=3.4e+02 Score=25.08 Aligned_cols=70 Identities=21% Similarity=0.363 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhh
Q 010719 356 KEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVES 429 (503)
Q Consensus 356 kel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA 429 (503)
-.+..|+++++.+..+|+.||......+..-...+...++....-. .-....+.+.+.+...+....-|.
T Consensus 77 ~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~l~~l~~~~~~~~~e~ 146 (191)
T PF04156_consen 77 PRLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR----ELLKSVEERLDSLDESIKELEKEI 146 (191)
T ss_pred hhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566688888888888888888888877777777766655544433 233333444444444444433333
No 133
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=36.59 E-value=3.9e+02 Score=25.61 Aligned_cols=66 Identities=17% Similarity=0.171 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHH-HHHHHHhhHHHHHHhhhchhHHHHHHhh
Q 010719 356 KEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEE-REQFDEANDQIVEHLKTKEDELLKSIAA 424 (503)
Q Consensus 356 kel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEE-RdqFdEAnnqIv~hLk~KedELsksi~s 424 (503)
..+...|..-++.+.+.++-.+..+..|..|+.+....+.| |+. +.......-+.=+.+|-.++.+
T Consensus 44 ~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~---~~a~~~~~~~~~ea~L~~~~~~ 110 (155)
T PRK06569 44 TNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDS---LESEFLIKKKNLEQDLKNSINQ 110 (155)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888888888899999999999998888887 643 3333344444445555555443
No 134
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=36.43 E-value=4.6e+02 Score=26.41 Aligned_cols=37 Identities=30% Similarity=0.363 Sum_probs=16.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 010719 359 GAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQE 395 (503)
Q Consensus 359 ~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rE 395 (503)
.+++..++.+.+.++++++..+.++..+..++..+++
T Consensus 143 ~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~ 179 (423)
T TIGR01843 143 RAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISE 179 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444433
No 135
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=36.31 E-value=99 Score=34.16 Aligned_cols=67 Identities=21% Similarity=0.220 Sum_probs=51.5
Q ss_pred HHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhHHH
Q 010719 363 SELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLS 433 (503)
Q Consensus 363 ~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~vv~ 433 (503)
+.|..|+-++++.|.+.|..|++-..+-....+++..-..+...|..|++.+|-||.+ -+.|.+.++
T Consensus 2 ~~~~s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~----Lq~e~~~l~ 68 (459)
T KOG0288|consen 2 APLYSQKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNR----LQEENTQLN 68 (459)
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 3566788888888888888888888888888888888888888888888888877643 344444443
No 136
>PF06920 Ded_cyto: Dedicator of cytokinesis; InterPro: IPR010703 This family represents a conserved region of approximately 200 residues within a number of eukaryotic dedicator of cytokinesis (DOCK) proteins. These proteins are potential guanine nucleotide exchange factors that activate some small GTPases, such as Rac, by exchanging bound GDP for free GTP []. DOCK proteins are required during several cellular processes, such as cell motility and phagocytosis. For instance, DOCK2 is specifically expressed in haemopoietic cells, and plays a critical role in lymphocyte migration [].; GO: 0005085 guanyl-nucleotide exchange factor activity, 0005525 GTP binding, 0051020 GTPase binding; PDB: 2WMO_A 2WM9_A 2WMN_A 3VHL_A 3B13_A 2YIN_B.
Probab=35.05 E-value=21 Score=33.36 Aligned_cols=54 Identities=26% Similarity=0.401 Sum_probs=30.9
Q ss_pred eecCCCCCCcchhhhhhhhhhhhHHHHHHhccCCChhHHHHHHHH---HHhhhcCcHHHHHHHHHh
Q 010719 129 YDADFGGEPLNFRDVFLQSQALEAITVSMILEAPNEEEISLLLEM---FGLCLTGGKEVHHAITSS 191 (503)
Q Consensus 129 ~D~d~gGePmnFrdVFL~SqALE~I~lSmileaP~eeEvsLLlEi---FglcL~GGkeVh~aivss 191 (503)
+|+.+.|+|+.+.++||...-+ .+-+.+-+..|-++ |--||.=|-.+|..+++.
T Consensus 100 v~a~VngG~~~y~~~Fl~~~~~---------~~~~~~~~~~L~~~~~~~~~~~~~~L~~h~~~~~~ 156 (178)
T PF06920_consen 100 VDAAVNGGPSKYAEAFLSPEYL---------HPEDKELVEKLKEAFIDQLIVLERALELHKKLCSP 156 (178)
T ss_dssp HS-SSS-TTHHHHHHHSSCHHC---------SHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--G
T ss_pred ccccccCchHHHHHHHcCcccc---------CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCh
Confidence 6777899999999999987665 22244444434333 334444555666666654
No 137
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=34.96 E-value=4.1e+02 Score=26.99 Aligned_cols=82 Identities=26% Similarity=0.394 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhh-hH
Q 010719 353 EKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVES-DV 431 (503)
Q Consensus 353 ~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA-~v 431 (503)
+.|-++..+..+|..+-.+|+-++.++... -.....||.||-.-..||-.|.+..+.+.........-|- .+
T Consensus 31 e~e~~~~~d~~~L~~~Q~~L~~e~~~l~~e-------qQ~l~~er~~l~~er~~~~~~~~e~~~~~e~~r~~fekekqq~ 103 (228)
T PRK06800 31 EVEEEIQKDHEELLAQQKSLHKELNQLRQE-------QQKLERERQQLLADREQFQEHVQQQMKEIEAARQQFQKEQQET 103 (228)
T ss_pred hhcchhhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666555443 4455577777777777777777777777766655555553 46
Q ss_pred HHHHHHhhHh
Q 010719 432 LSTWINFLED 441 (503)
Q Consensus 432 v~tWinFLed 441 (503)
.-+|-.||=|
T Consensus 104 ~~~~t~~Lwd 113 (228)
T PRK06800 104 AYEWTELLWD 113 (228)
T ss_pred HHHHHHHHHH
Confidence 7799999955
No 138
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=34.69 E-value=2.6e+02 Score=28.56 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=11.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHHHHHH
Q 010719 360 AEISELVKQRDHLEAELKKVNLSLAAAQ 387 (503)
Q Consensus 360 ~EI~~LekqrdeLEAeLkkVn~sL~aA~ 387 (503)
+++..++.+..++++++......+..|+
T Consensus 99 ~~~~~~~a~l~~~~~~l~~a~~~l~~a~ 126 (370)
T PRK11578 99 NQIKEVEATLMELRAQRQQAEAELKLAR 126 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333
No 139
>PRK14158 heat shock protein GrpE; Provisional
Probab=34.50 E-value=4.6e+02 Score=25.86 Aligned_cols=69 Identities=12% Similarity=0.194 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhh
Q 010719 356 KEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACR 426 (503)
Q Consensus 356 kel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~ 426 (503)
..+..+|..|+++.++|..++.+..+-.--.+-|.. +|--+...-|...++..|=-=.|.|.+.+....
T Consensus 43 ~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~--kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~ 111 (194)
T PRK14158 43 KELEEALAAKEAEAAANWDKYLRERADLENYRKRVQ--KEKEELLKYGNESLILEILPAVDNMERALDHAD 111 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHhHHHHHHhccC
Confidence 345556666666666666666655555544443333 333344455777777777777888988887644
No 140
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=34.08 E-value=7.6e+02 Score=28.23 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=14.5
Q ss_pred HHHHHHHHhhhchHHHhHhhhhhhhhhHHh
Q 010719 311 KLKVLSESLSNSSVKAEKRISDHRSQKEEA 340 (503)
Q Consensus 311 kLkvlsEsLanS~skAEkrI~d~R~QKEeA 340 (503)
+++.+.+.-+..-+++|.-|.-.+-+-.++
T Consensus 96 ~ar~~l~e~~~~ra~~e~ei~kl~~e~~el 125 (546)
T KOG0977|consen 96 TARKLLDETARERAKLEIEITKLREELKEL 125 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 333444444455555555555444444443
No 141
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=34.08 E-value=1.2e+02 Score=29.20 Aligned_cols=46 Identities=30% Similarity=0.325 Sum_probs=36.6
Q ss_pred HHHHHHHHHhHHHHHHHH-----------HHHhHHHHHHHHHHHHhHHHHHHHHHhh
Q 010719 359 GAEISELVKQRDHLEAEL-----------KKVNLSLAAAQARLRNAQEEREQFDEAN 404 (503)
Q Consensus 359 ~~EI~~LekqrdeLEAeL-----------kkVn~sL~aA~aRl~~~rEERdqFdEAn 404 (503)
.++|+.||+|.++||..+ .+|-.+|..++..|.++...|+.+.+.-
T Consensus 4 ~~~l~~Le~Ri~~LE~~v~G~~~~~~~~~~~v~~~L~~~~~~L~~~~s~re~i~~l~ 60 (174)
T PF07426_consen 4 MSALDILEKRIEELERRVYGENGSKEGQPEKVIDSLLSVQSALNSAASKRERIKELF 60 (174)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCccccCCchHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 467899999999999998 2344678888888988888888877543
No 142
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=33.87 E-value=1.8e+02 Score=24.64 Aligned_cols=62 Identities=23% Similarity=0.429 Sum_probs=45.9
Q ss_pred cchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHH
Q 010719 350 ESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLK 420 (503)
Q Consensus 350 Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsk 420 (503)
.++.+-+++..|+..|..+-.+|.+++++.+.+.+ +..|.....--..++..|-.|-|.+.+
T Consensus 14 ~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~---------~~~R~~L~~~l~~lv~~mE~K~dQI~~ 75 (79)
T PF06657_consen 14 ALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLG---------RRKRRDLEQELEELVKRMEAKADQIYK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC---------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999999999999999999988753 344555555556666666666665543
No 143
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=33.50 E-value=4e+02 Score=27.82 Aligned_cols=136 Identities=18% Similarity=0.255 Sum_probs=71.2
Q ss_pred hhhHHHHhhHHHHHHHHhhhchHHHhHhhhhhhhhhHHhhhhhhhccccchHHHHHHHHHHHHHH------HhHHHHHHH
Q 010719 302 PEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELV------KQRDHLEAE 375 (503)
Q Consensus 302 pe~ha~kvdkLkvlsEsLanS~skAEkrI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~Le------kqrdeLEAe 375 (503)
-..+++.+|.-+. --.++-+.|..+...|..|.. |..+|..|. .+...||.|
T Consensus 116 e~~~a~~~d~yR~----~LK~IR~~E~sl~p~R~~r~~------------------l~d~I~kLk~k~P~s~kl~~LeqE 173 (271)
T PF13805_consen 116 EDQYADRLDQYRI----HLKSIRNREESLQPSRDRRRK------------------LQDEIAKLKYKDPQSPKLVVLEQE 173 (271)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHH-TTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHhHH------------------HHHHHHHHHhcCCCChHHHHHHHH
Confidence 3344555555544 344566667776666655542 223333333 245678888
Q ss_pred HHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhHHHHHHHhhHhhHHH----hhhHH-
Q 010719 376 LKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVL----QCSQM- 450 (503)
Q Consensus 376 LkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~vv~tWinFLedtW~l----q~~~~- 450 (503)
|.+.+.....|.|.|.|.+ |..|-||-+--..+|..--+-+ .-|+ .-=+.-++.|+||=+. ...|.
T Consensus 174 LvraEae~lvaEAqL~n~k--R~~lKEa~~~~f~Al~E~aEK~-~Ila------~~gk~Ll~lldd~pv~PG~~r~~Y~g 244 (271)
T PF13805_consen 174 LVRAEAENLVAEAQLSNIK--RQKLKEAYSLKFDALIERAEKQ-AILA------EYGKRLLELLDDTPVVPGDTRPPYDG 244 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-HHHH------HHHHHHHTTS------TTS-------
T ss_pred HHHHHHHhhHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHH-HHHH------HHHHHHHHhccCCCCCCCCCCCCCCC
Confidence 8888888888888888876 5567777665555543211110 0011 1113457788888753 23444
Q ss_pred HHHHhhhhHHHhhhHhHH
Q 010719 451 ELKEKQVSEELVKHEDYF 468 (503)
Q Consensus 451 e~kekq~~deler~~~~f 468 (503)
..+.+|+-.+.++|-..|
T Consensus 245 ~~~t~qIl~dAe~~L~~w 262 (271)
T PF13805_consen 245 YEQTRQILNDAERALRSW 262 (271)
T ss_dssp HHHHHHHHHHHHHHHHT-
T ss_pred hhHHHHHHHHHHHHHHhC
Confidence 366788888888876544
No 144
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=33.49 E-value=1.6e+02 Score=30.08 Aligned_cols=58 Identities=21% Similarity=0.163 Sum_probs=39.4
Q ss_pred HHHhhhhhhhhhhhhccCCCChhhHHHHhhHHHHHHHHhhhchHHHhHhhhhhhhhhHHhhhhhh
Q 010719 281 RVCTRLEGLLLKKKLLSYGDSPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRV 345 (503)
Q Consensus 281 RlcS~lE~lllkkk~~~~Gdspe~ha~kvdkLkvlsEsLanS~skAEkrI~d~R~QKEeAl~fRv 345 (503)
-||.-+|.|+-+- +.|+ .-+|+..|+-==..|.+++..-|++|.+...|.+.=-...-
T Consensus 161 vLL~~ae~L~~vY------P~~g-a~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~ 218 (259)
T PF08657_consen 161 VLLRGAEKLCNVY------PLPG-AREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSS 218 (259)
T ss_pred HHHHHHHHHHHhC------CChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 4555555555441 2232 34677777777788999999999999999888875444333
No 145
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=32.43 E-value=1.6e+02 Score=25.20 Aligned_cols=36 Identities=25% Similarity=0.311 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHH
Q 010719 355 EKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARL 390 (503)
Q Consensus 355 Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl 390 (503)
++-+..-|..|+++.+.|+.++++++..++.-...+
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 89 IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555666666655555555544443
No 146
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=32.27 E-value=2.9e+02 Score=29.89 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=32.4
Q ss_pred cchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 010719 350 ESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQE 395 (503)
Q Consensus 350 Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rE 395 (503)
++.+.-.-+..++.+|..++.+|+.++++++..|..++.+|..+.-
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4555556667777777777778888777777777777766655543
No 147
>PHA03093 EEV glycoprotein; Provisional
Probab=32.24 E-value=21 Score=35.08 Aligned_cols=14 Identities=43% Similarity=1.500 Sum_probs=7.9
Q ss_pred hHHHHHH-HhhHhhH
Q 010719 430 DVLSTWI-NFLEDSW 443 (503)
Q Consensus 430 ~vv~tWi-nFLedtW 443 (503)
+++++|+ .||||||
T Consensus 138 ~l~~~WL~dYLegTW 152 (185)
T PHA03093 138 NLMTTWLSDYLEDTW 152 (185)
T ss_pred chHHHHHHHHhhccc
Confidence 4555665 3566666
No 148
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=32.07 E-value=3.4e+02 Score=23.52 Aligned_cols=48 Identities=25% Similarity=0.385 Sum_probs=22.8
Q ss_pred HhhhhhhhhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 010719 328 KRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKV 379 (503)
Q Consensus 328 krI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkV 379 (503)
+||...-...|.++.-|..+.+.. -++..||+.|...+..|..+|.+.
T Consensus 11 ~rL~~aid~LE~~v~~r~~~~~~~----~~~e~ei~~l~~dr~rLa~eLD~~ 58 (89)
T PF13747_consen 11 TRLEAAIDRLEKAVDRRLERDRKR----DELEEEIQRLDADRSRLAQELDQA 58 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHhhHHHHHHHHHhH
Confidence 333333334444444444444433 334445555555555555555443
No 149
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=32.02 E-value=1.8e+02 Score=27.64 Aligned_cols=43 Identities=30% Similarity=0.485 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHH
Q 010719 356 KEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEERE 398 (503)
Q Consensus 356 kel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERd 398 (503)
+.+..||.++.+-.+.|-+|+--+|+.++.+..++..+++|-+
T Consensus 133 ~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~ 175 (194)
T PF08614_consen 133 KDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENR 175 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888888888888889999988888888888754
No 150
>PF10123 Mu-like_Pro: Mu-like prophage I protein; InterPro: IPR012106 This entry is represented by the Bacteriophage Mu, Gp32. The characteristics of the protein distribution suggest prophage matches.
Probab=31.71 E-value=3.3e+02 Score=27.99 Aligned_cols=52 Identities=17% Similarity=0.086 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHH--HHhHHHHHHHHHHHHhHHHHHHHHH
Q 010719 351 SSEKEKEIGAEISELVKQRDHLEAELK--KVNLSLAAAQARLRNAQEEREQFDE 402 (503)
Q Consensus 351 v~~~Ekel~~EI~~LekqrdeLEAeLk--kVn~sL~aA~aRl~~~rEERdqFdE 402 (503)
.........+++..|..|..+|++++. ++..-+++|-..=+.+--.|+.+..
T Consensus 211 ~d~a~~~~~~~~~al~~qlaaL~~~~~~~~~e~lV~~Ai~~Gki~Pa~r~~~~~ 264 (326)
T PF10123_consen 211 PDPAKFVPVATVNALQAQLAALKAQLAEAEAEALVDAAIKDGKITPAQRDWARA 264 (326)
T ss_pred ccHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 334444445667777777777777766 4567777777666667666766544
No 151
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=31.68 E-value=7.8e+02 Score=27.60 Aligned_cols=12 Identities=25% Similarity=0.423 Sum_probs=6.3
Q ss_pred hhchhhHHHHHH
Q 010719 482 ELGPSISRIGKF 493 (503)
Q Consensus 482 ~l~~~i~~i~~~ 493 (503)
.|.|.=++|..|
T Consensus 141 ll~Pl~e~l~~f 152 (475)
T PRK10361 141 LLSPLREQLDGF 152 (475)
T ss_pred HHhhHHHHHHHH
Confidence 355555555555
No 152
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=31.58 E-value=2.3e+02 Score=30.25 Aligned_cols=70 Identities=24% Similarity=0.426 Sum_probs=39.1
Q ss_pred hHHH-HHHHHHHHHHHHhHHHHHHHHHHHhHHHHH-------------HHHHHHHhHHHHHHHHHhhHHHHHHhhhchhH
Q 010719 352 SEKE-KEIGAEISELVKQRDHLEAELKKVNLSLAA-------------AQARLRNAQEEREQFDEANDQIVEHLKTKEDE 417 (503)
Q Consensus 352 ~~~E-kel~~EI~~LekqrdeLEAeLkkVn~sL~a-------------A~aRl~~~rEERdqFdEAnnqIv~hLk~KedE 417 (503)
-+.. .++..++..|..+..++..+|.+++..|.. ....++.+.+.+.+..+.-+++-..|+.-.++
T Consensus 325 vg~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~ 404 (451)
T PF03961_consen 325 VGVDRPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEE 404 (451)
T ss_pred EecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555 667777777777777777666666665432 23445555555555555555555444444444
Q ss_pred HHHH
Q 010719 418 LLKS 421 (503)
Q Consensus 418 Lsks 421 (503)
|.+.
T Consensus 405 l~~~ 408 (451)
T PF03961_consen 405 LERS 408 (451)
T ss_pred HHhh
Confidence 4333
No 153
>PRK14145 heat shock protein GrpE; Provisional
Probab=31.28 E-value=4.9e+02 Score=25.83 Aligned_cols=67 Identities=13% Similarity=0.238 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhh
Q 010719 356 KEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAA 424 (503)
Q Consensus 356 kel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~s 424 (503)
..+..++..|+++.++|.+.+.+..+-.-- .|.+..+|--+..+-|...++..|=-=-|.|.+.+..
T Consensus 48 ~~l~~~l~~le~e~~el~d~~lR~~AEfeN--~rkR~~kE~e~~~~~a~e~~~~~LLpV~DnLerAl~~ 114 (196)
T PRK14145 48 EELKQKLQQKEVEAQEYLDIAQRLKAEFEN--YRKRTEKEKSEMVEYGKEQVILELLPVMDNFERALAS 114 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhc
Confidence 345555666666666666655554444333 3444455666667778888888777778999988865
No 154
>PRK10132 hypothetical protein; Provisional
Probab=31.27 E-value=3.2e+02 Score=24.66 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=8.0
Q ss_pred HHhHHHHHHHHHHHHhH
Q 010719 378 KVNLSLAAAQARLRNAQ 394 (503)
Q Consensus 378 kVn~sL~aA~aRl~~~r 394 (503)
+++..|..|+.++..+.
T Consensus 49 r~~~~L~~ar~~l~~~~ 65 (108)
T PRK10132 49 KAQALLKETRARMHGRT 65 (108)
T ss_pred HHHHHHHHHHHHHhhhH
Confidence 34444555555555433
No 155
>PRK01156 chromosome segregation protein; Provisional
Probab=30.98 E-value=8.7e+02 Score=27.97 Aligned_cols=178 Identities=11% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHhhhchHHHhHhhhhhhhhhHHhhhhhhhccccchHHHHHHH------HHHHHHHHhHHHHHHHHHHHh
Q 010719 307 QKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIG------AEISELVKQRDHLEAELKKVN 380 (503)
Q Consensus 307 ~kvdkLkvlsEsLanS~skAEkrI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~------~EI~~LekqrdeLEAeLkkVn 380 (503)
..+.+++---+.|..-..+.|..+.+.-.-++..-.+ -.+..+.....+.+. .++..|.++...++.++.+++
T Consensus 305 ~~l~~l~~~l~~l~~~l~~~e~~~~~~e~~~~~~~e~-~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~ 383 (895)
T PRK01156 305 NDIENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDY-IKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYS 383 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhHHHHHHHhhHhhHHHhhhHHHHHHhhhhHH
Q 010719 381 LSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEE 460 (503)
Q Consensus 381 ~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~vv~tWinFLedtW~lq~~~~e~kekq~~de 460 (503)
..+......+.+.-..-+.|-..-+.-+.-++.+.++|.+.|...+.+-.-++.=|+=| +.+.++
T Consensus 384 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el---------------~~~~~~ 448 (895)
T PRK01156 384 KNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDEL---------------SRNMEM 448 (895)
T ss_pred hhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHh
Q ss_pred HhhhHhHHH-------HHHHHHHHHHHHhhchhhHHHHHHHHhhhcc
Q 010719 461 LVKHEDYFV-------NLAISLLSAYKKELGPSISRIGKFVENLKNL 500 (503)
Q Consensus 461 ler~~~~f~-------~l~~~~ls~~ke~l~~~i~~i~~~v~nl~~l 500 (503)
|..|+-|=+ .+..+++..|.+++.-.-.+|+..=.+++.+
T Consensus 449 l~~~~~Cp~c~~~~~~e~~~e~i~~~~~~i~~l~~~i~~l~~~~~~l 495 (895)
T PRK01156 449 LNGQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDI 495 (895)
T ss_pred hccCCCCCCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 156
>PRK12705 hypothetical protein; Provisional
Probab=30.82 E-value=8.1e+02 Score=27.55 Aligned_cols=109 Identities=14% Similarity=0.186 Sum_probs=0.0
Q ss_pred hchHHHhHhhhhhhhhhHHhhhhhhhcc----ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHH
Q 010719 321 NSSVKAEKRISDHRSQKEEALKVRVVKA----NESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEE 396 (503)
Q Consensus 321 nS~skAEkrI~d~R~QKEeAl~fRv~K~----~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEE 396 (503)
.....|...+...|.+.|.-++-|-.+. +-+.+.|..+......|+++.++|+.+-++++........+......+
T Consensus 52 ~~~~~~~~~~~~~~~~~e~e~~~~~~~~~~~e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 131 (508)
T PRK12705 52 AALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNE 131 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH-----HHhhHHHHHHhhhch-hHHHHHHhhhhhhh
Q 010719 397 REQF-----DEANDQIVEHLKTKE-DELLKSIAACRVES 429 (503)
Q Consensus 397 RdqF-----dEAnnqIv~hLk~Ke-dELsksi~sc~vEA 429 (503)
=..- +||..+++..++.+- .|..+-|.....|+
T Consensus 132 Le~ia~lt~~eak~~l~~~~~~~~~~e~~~~i~~~e~~~ 170 (508)
T PRK12705 132 LYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEEA 170 (508)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 157
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=30.77 E-value=7.3e+02 Score=28.97 Aligned_cols=108 Identities=19% Similarity=0.175 Sum_probs=81.7
Q ss_pred hHHHHhhHHHHHHHHhhhchHHHhHhhhhhhhhhHHhhhhhh---hccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 010719 304 VHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRV---VKANESSEKEKEIGAEISELVKQRDHLEAELKKVN 380 (503)
Q Consensus 304 ~ha~kvdkLkvlsEsLanS~skAEkrI~d~R~QKEeAl~fRv---~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn 380 (503)
++..|||.....-.-|-++++.+|+.+.+-.++.-+...+=. ..+.-+-+-+..|..-+.+|.+|+++=.+|++.|-
T Consensus 51 ~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~ 130 (660)
T KOG4302|consen 51 IYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELY 130 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344788888888888999999999999999888888776666 56667777888888889999999998888887743
Q ss_pred -----------------------------HHHHHHHHHHHHhHHHHHHHHHhhHHHHHHh
Q 010719 381 -----------------------------LSLAAAQARLRNAQEEREQFDEANDQIVEHL 411 (503)
Q Consensus 381 -----------------------------~sL~aA~aRl~~~rEERdqFdEAnnqIv~hL 411 (503)
.+|+.=+.+|..+++|+..==+-++.++..+
T Consensus 131 ~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I 190 (660)
T KOG4302|consen 131 HQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEI 190 (660)
T ss_pred HHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777888888877765444444444433
No 158
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=30.52 E-value=1.4e+02 Score=28.31 Aligned_cols=50 Identities=22% Similarity=0.327 Sum_probs=39.1
Q ss_pred hHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHH
Q 010719 337 KEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAA 386 (503)
Q Consensus 337 KEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA 386 (503)
.++|..|=-+|-+++....+.+..+|..|..+..++++++.++-...+++
T Consensus 92 ~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~~ 141 (145)
T COG1730 92 ADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAAA 141 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667776777778888888888999999999999998888876665544
No 159
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=30.31 E-value=6e+02 Score=25.87 Aligned_cols=56 Identities=21% Similarity=0.284 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhh
Q 010719 369 RDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVE 428 (503)
Q Consensus 369 rdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vE 428 (503)
-.+.+..+.++..++.-+..+-+--=|.+.+| ++++...|.++++|.+.|..|+..
T Consensus 151 ~~~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~----~~~l~~~k~~v~~Le~~v~~aK~~ 206 (239)
T PF05276_consen 151 YNEAEQRVQQLEKKLKRAIKKSRPYFELKAKF----NQQLEEQKEKVEELEAKVKQAKSR 206 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555677776 467777899999999999999865
No 160
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=30.10 E-value=5.7e+02 Score=28.40 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=17.7
Q ss_pred HHHHHhhhchhHHHHHHhhhhhhhhHHHHHHH
Q 010719 406 QIVEHLKTKEDELLKSIAACRVESDVLSTWIN 437 (503)
Q Consensus 406 qIv~hLk~KedELsksi~sc~vEA~vv~tWin 437 (503)
....-|..|..||..-+..-.+-.+.+.|||.
T Consensus 360 ~L~keLeekkreleql~~q~~v~~saLdtCik 391 (442)
T PF06637_consen 360 SLAKELEEKKRELEQLKMQLAVKTSALDTCIK 391 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 33444445555555555555555666666664
No 161
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=29.57 E-value=2.4e+02 Score=29.11 Aligned_cols=61 Identities=23% Similarity=0.334 Sum_probs=48.9
Q ss_pred cccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHH
Q 010719 348 ANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIV 408 (503)
Q Consensus 348 ~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv 408 (503)
..++...-.++..+.....+++..|+.+.+.+..+|..|..=+.....|+..+.+-..++-
T Consensus 244 l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~ 304 (344)
T PF12777_consen 244 LAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELE 304 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHH
Confidence 3455566667778888888889999999999999999999988899999988887655543
No 162
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=28.94 E-value=3.8e+02 Score=23.18 Aligned_cols=45 Identities=24% Similarity=0.323 Sum_probs=25.0
Q ss_pred ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHh
Q 010719 349 NESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNA 393 (503)
Q Consensus 349 ~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~ 393 (503)
+++.+-=..|.+.-+.|..+.|..++++.+++.--.....||..+
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333355566666666666666666666655555555555443
No 163
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=28.94 E-value=37 Score=30.34 Aligned_cols=56 Identities=18% Similarity=0.324 Sum_probs=43.3
Q ss_pred chhHHHHHHhhhhhhhhHHHHHHHhhHhhHHHhhhHHHHHHhhhhHHHhhhHhHHHHH
Q 010719 414 KEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNL 471 (503)
Q Consensus 414 KedELsksi~sc~vEA~vv~tWinFLedtW~lq~~~~e~kekq~~deler~~~~f~~l 471 (503)
+..+....|.++..-.|-+..|++|+ .|..|+.-..-+...+..=||||...|.+.
T Consensus 4 ~r~~~e~~i~~~~~~dDPL~~w~~yI--~w~~~~~p~~~~~~~L~~lLer~~~~f~~~ 59 (126)
T PF08311_consen 4 QRQEFEEQIRSYEEGDDPLDPWLRYI--KWIEENYPSGGKQSGLLELLERCIRKFKDD 59 (126)
T ss_dssp HHHHHHHHHHCCGGSS-CHHHHHHHH--HHHHHHCTTCCCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHccCCCCChHHHHHHH--HHHHHHCCCCCchhHHHHHHHHHHHHHhhh
Confidence 34455667788887788999999999 588888776567778888999999998664
No 164
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=28.87 E-value=3.4e+02 Score=22.62 Aligned_cols=63 Identities=16% Similarity=0.207 Sum_probs=36.4
Q ss_pred HHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHH---HHHHhhhchhHHHHHHhhhhh
Q 010719 365 LVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQ---IVEHLKTKEDELLKSIAACRV 427 (503)
Q Consensus 365 LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnq---Iv~hLk~KedELsksi~sc~v 427 (503)
|+..+..|...|..+..++..-..-.+..+-|||-|.-.-.- =+..||.+.+.|.+.+..|..
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333444444445555555555556667777788777532221 134577777878777776653
No 165
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=28.85 E-value=1.6e+02 Score=24.27 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHH
Q 010719 352 SEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQAR 389 (503)
Q Consensus 352 ~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aR 389 (503)
..+...|...+..+++..+.|+.+++.+...+......
T Consensus 61 ~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 61 EEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555554444444433
No 166
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=28.80 E-value=6.9e+02 Score=26.12 Aligned_cols=31 Identities=26% Similarity=0.304 Sum_probs=14.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhHHHHHHHHH
Q 010719 359 GAEISELVKQRDHLEAELKKVNLSLAAAQAR 389 (503)
Q Consensus 359 ~~EI~~LekqrdeLEAeLkkVn~sL~aA~aR 389 (503)
..||....+...+++.||..++..+++...+
T Consensus 217 ~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~ 247 (312)
T smart00787 217 LQEIMIKVKKLEELEEELQELESKIEDLTNK 247 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555544444443333
No 167
>PRK14155 heat shock protein GrpE; Provisional
Probab=28.69 E-value=6e+02 Score=25.33 Aligned_cols=71 Identities=17% Similarity=0.158 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhh
Q 010719 355 EKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRV 427 (503)
Q Consensus 355 Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~v 427 (503)
+.++..+|..|+++.++|..++.+..+-..-.+-|.. +|--+...-|...++..|=-=.|.|.+.+.....
T Consensus 15 ~~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~--kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~ 85 (208)
T PRK14155 15 ADDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAE--REMNDARAYAIQKFARDLLGAADNLGRATAASPK 85 (208)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhHHhhHHHHHhcccc
Confidence 3567778888888888888888777766655444433 3333455667777887777778999998877653
No 168
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=28.50 E-value=2.2e+02 Score=23.52 Aligned_cols=32 Identities=31% Similarity=0.378 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHH
Q 010719 354 KEKEIGAEISELVKQRDHLEAELKKVNLSLAA 385 (503)
Q Consensus 354 ~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~a 385 (503)
--+.+..+|..|+++...++.++++....|.+
T Consensus 70 ~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 70 RIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777777777776666643
No 169
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=27.96 E-value=2.4e+02 Score=23.97 Aligned_cols=14 Identities=36% Similarity=0.510 Sum_probs=5.0
Q ss_pred HHHhHHHHHHHHHH
Q 010719 365 LVKQRDHLEAELKK 378 (503)
Q Consensus 365 LekqrdeLEAeLkk 378 (503)
+-++..+||++++.
T Consensus 79 lk~~i~~le~~~~~ 92 (108)
T PF02403_consen 79 LKEEIKELEEQLKE 92 (108)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 170
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=27.85 E-value=4e+02 Score=27.56 Aligned_cols=78 Identities=23% Similarity=0.299 Sum_probs=51.6
Q ss_pred HHHHHHhhhchHHHhHhhhhhhhhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHH
Q 010719 313 KVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRN 392 (503)
Q Consensus 313 kvlsEsLanS~skAEkrI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~ 392 (503)
...---|......+|+.+-..-.++++|-.-| ..+..-|+.+..+-.+...++++-+.+|.++...|.+|..-+.+
T Consensus 25 ~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~----~~~~~ee~~~~~~~~ei~~~~~~a~~~L~~a~P~L~~A~~al~~ 100 (344)
T PF12777_consen 25 EEKQPELEEKQKEAEELLEEIEKEQEEAEKKK----AIVEEEEEEAEKQAKEIEEIKEEAEEELAEAEPALEEAQEALKS 100 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444566666667765554444444443322 23455666777777778888999999999999999999887776
Q ss_pred hH
Q 010719 393 AQ 394 (503)
Q Consensus 393 ~r 394 (503)
..
T Consensus 101 l~ 102 (344)
T PF12777_consen 101 LD 102 (344)
T ss_dssp S-
T ss_pred CC
Confidence 54
No 171
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=27.55 E-value=9.9e+02 Score=27.48 Aligned_cols=54 Identities=26% Similarity=0.314 Sum_probs=35.1
Q ss_pred hHHHhHhhhhhhhhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 010719 323 SVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKK 378 (503)
Q Consensus 323 ~skAEkrI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkk 378 (503)
...=|..|.+-+.|-.+... ..=....++.|..+.+|+..|.+.++.|+.+|..
T Consensus 52 V~eLE~sL~eLk~q~~~~~~--~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqa 105 (617)
T PF15070_consen 52 VQELERSLSELKNQMAEPPP--PEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQA 105 (617)
T ss_pred HHHHHHHHHHHHHhhcccCC--ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333331 1112457788999999999999999999988865
No 172
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=27.54 E-value=1e+02 Score=26.25 Aligned_cols=42 Identities=29% Similarity=0.416 Sum_probs=19.8
Q ss_pred HHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 010719 338 EEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKV 379 (503)
Q Consensus 338 EeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkV 379 (503)
++|..|=.+|-+.++..-+.+..++..+..+...+++.+.++
T Consensus 76 ~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 76 EEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555444444444444444444444444444444444433
No 173
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.91 E-value=1e+02 Score=36.65 Aligned_cols=51 Identities=25% Similarity=0.419 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhHHHH----HHHHHHHHhHHHHHHHHHhhHH
Q 010719 356 KEIGAEISELVKQRDHLEAELKKVNLSLA----AAQARLRNAQEEREQFDEANDQ 406 (503)
Q Consensus 356 kel~~EI~~LekqrdeLEAeLkkVn~sL~----aA~aRl~~~rEERdqFdEAnnq 406 (503)
-.+..|+..|+|+.+.|+.|+++++.+|+ -+.|--....+||+...+...+
T Consensus 810 id~~~e~~rl~k~~~k~~~e~~~~~~kl~ne~f~~kAp~~vv~~e~~~~~~~~~~ 864 (877)
T COG0525 810 IDLAAELARLEKELEKLEKEIDRIEKKLSNEGFVAKAPEEVVEKEKEKLAEYQVK 864 (877)
T ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHhhcchhhhhcCCHHHHHHHHHHHHhHHHH
Confidence 46779999999999999999999999998 5566666777777766555443
No 174
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=26.88 E-value=2.6e+02 Score=26.25 Aligned_cols=19 Identities=16% Similarity=0.158 Sum_probs=12.8
Q ss_pred hhhcCcHHHHHHHHHhHHH
Q 010719 176 LCLTGGKEVHHAITSSIQD 194 (503)
Q Consensus 176 lcL~GGkeVh~aivssiqd 194 (503)
+||.....+.+.|+.++..
T Consensus 22 L~lPlp~~~R~~i~~~~~~ 40 (192)
T PF05529_consen 22 LVLPLPSPIRRKIFKFLDK 40 (192)
T ss_pred HHHhCCcHHHHHHHHHHHH
Confidence 5666666677777776654
No 175
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=26.82 E-value=5.6e+02 Score=24.36 Aligned_cols=19 Identities=11% Similarity=0.303 Sum_probs=0.0
Q ss_pred HhHhhhhhhhhhHHhhhhh
Q 010719 326 AEKRISDHRSQKEEALKVR 344 (503)
Q Consensus 326 AEkrI~d~R~QKEeAl~fR 344 (503)
-+..+...|...-++.+.|
T Consensus 72 le~~~~~l~~ELael~r~~ 90 (194)
T PF08614_consen 72 LEQKLAKLQEELAELYRSK 90 (194)
T ss_dssp -------------------
T ss_pred ccccccccccccccccccc
Confidence 3455555555554544444
No 176
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=26.66 E-value=1.3e+03 Score=28.69 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=11.8
Q ss_pred HHHHHHHhccchhhhc
Q 010719 192 IQDLATAISKYQDEVL 207 (503)
Q Consensus 192 iqdLA~afs~y~DEvL 207 (503)
.++.|..|+.|-||+=
T Consensus 224 ~l~ea~ra~~yrdeld 239 (1195)
T KOG4643|consen 224 FLDEAHRADRYRDELD 239 (1195)
T ss_pred HHHHHHhhhhhhhHHH
Confidence 3457888888888844
No 177
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=26.47 E-value=4.6e+02 Score=25.18 Aligned_cols=71 Identities=24% Similarity=0.434 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhH--HHHHHHHHhhHHHHH---------HhhhchhHHHHHHhh
Q 010719 356 KEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQ--EEREQFDEANDQIVE---------HLKTKEDELLKSIAA 424 (503)
Q Consensus 356 kel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~r--EERdqFdEAnnqIv~---------hLk~KedELsksi~s 424 (503)
.+|..+|...=.+.|.|+-.-++.-..|......+.+-. +-|+.+++|++--+. .|..+-|+|.+++..
T Consensus 37 ~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~ 116 (159)
T PF05384_consen 37 EEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRN 116 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777888888888888888888888777776544 458999999985543 466777778877766
Q ss_pred hh
Q 010719 425 CR 426 (503)
Q Consensus 425 c~ 426 (503)
..
T Consensus 117 l~ 118 (159)
T PF05384_consen 117 LE 118 (159)
T ss_pred HH
Confidence 53
No 178
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=26.16 E-value=4e+02 Score=22.42 Aligned_cols=46 Identities=30% Similarity=0.360 Sum_probs=30.5
Q ss_pred HHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHH
Q 010719 361 EISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQ 406 (503)
Q Consensus 361 EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnq 406 (503)
|+..|+.+.++|-..-.++..-=..-+.+....+.||+++-+=|.+
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~ 46 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQ 46 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888776544444444344456777888999988776654
No 179
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=26.13 E-value=1.3e+02 Score=30.65 Aligned_cols=40 Identities=28% Similarity=0.356 Sum_probs=33.3
Q ss_pred ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHH
Q 010719 349 NESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQA 388 (503)
Q Consensus 349 ~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~a 388 (503)
+.+...+..+..+|...-.+.+.|-.+++++|.++..+.+
T Consensus 148 ~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~lN~~I~~~~~ 187 (322)
T TIGR02492 148 NELQDLRKGINAEIKSAVTEINSLLKQIASLNKEIQQVEA 187 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456677788888888888999999999999999988765
No 180
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=25.85 E-value=1e+03 Score=26.99 Aligned_cols=17 Identities=24% Similarity=0.595 Sum_probs=9.0
Q ss_pred HHHHHhhhchhHHHHHH
Q 010719 406 QIVEHLKTKEDELLKSI 422 (503)
Q Consensus 406 qIv~hLk~KedELsksi 422 (503)
.++..|+.+..++.+.+
T Consensus 288 ~~i~~L~~~l~~l~~~~ 304 (754)
T TIGR01005 288 DLIQRLRERQAELRATI 304 (754)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555554443
No 181
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=25.43 E-value=2.3e+02 Score=28.79 Aligned_cols=77 Identities=27% Similarity=0.337 Sum_probs=46.5
Q ss_pred ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhh
Q 010719 349 NESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVE 428 (503)
Q Consensus 349 ~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vE 428 (503)
+++..+++.-...+..+.....+|+..++++...+..... ..+..+.|-+.-...+.....+.++|......++..
T Consensus 263 ~eL~~v~~a~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~----~~~~~~~f~~~~~~f~~~~~~~~~~l~~~~~~~~~~ 338 (370)
T PF02181_consen 263 DELSSVEKASKVSLDELEQDIKELEKGLEKIKKELEAIEK----DEEDDDKFKEKMKEFLEEAETKLDELQELYEELEEA 338 (370)
T ss_dssp HHTTTHHHCCTS-HHHHHHHHHHHHHHHHHHHHHHHHCCT----TSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccc----cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444433345555555555666666655555544333 445677788888888888888888888777776544
Q ss_pred h
Q 010719 429 S 429 (503)
Q Consensus 429 A 429 (503)
.
T Consensus 339 ~ 339 (370)
T PF02181_consen 339 F 339 (370)
T ss_dssp H
T ss_pred H
Confidence 3
No 182
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=25.30 E-value=1.4e+03 Score=28.42 Aligned_cols=70 Identities=20% Similarity=0.180 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhh
Q 010719 357 EIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACR 426 (503)
Q Consensus 357 el~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~ 426 (503)
++..||...+++.++.++.+-+....+-.+..+....++.-+.--++-.+.+..|..-.+||......-+
T Consensus 738 ~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~ 807 (1074)
T KOG0250|consen 738 DLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLR 807 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4667888888888888888888888888887776666666666667778888888888888875554433
No 183
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=25.29 E-value=6.2e+02 Score=25.36 Aligned_cols=54 Identities=24% Similarity=0.351 Sum_probs=42.0
Q ss_pred hhhhccccchHHHHH------HHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHH
Q 010719 343 VRVVKANESSEKEKE------IGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEE 396 (503)
Q Consensus 343 fRv~K~~Ev~~~Eke------l~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEE 396 (503)
.||-|+.....+|.- =+..++.-|.+|-.||||-+.....++...+|+...+-.
T Consensus 75 WRViKt~d~~~AE~~Y~~F~~Qt~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaD 134 (192)
T PF11180_consen 75 WRVIKTQDEARAEAIYRDFAQQTARLADVEIRRAQLEAQKAQLERLIAESEARANRLQAD 134 (192)
T ss_pred eEeeecCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888888888863 356788888888888888888888888887777655443
No 184
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=24.83 E-value=3.1e+02 Score=29.00 Aligned_cols=30 Identities=23% Similarity=0.333 Sum_probs=21.4
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 010719 351 SSEKEKEIGAEISELVKQRDHLEAELKKVN 380 (503)
Q Consensus 351 v~~~Ekel~~EI~~LekqrdeLEAeLkkVn 380 (503)
..+..+.+..+|..|+++.++|++.|.+-.
T Consensus 240 ~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~ 269 (406)
T PF02388_consen 240 GKEYLESLQEKLEKLEKEIEKLEEKLEKNP 269 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 456667777788888888888888766554
No 185
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=24.80 E-value=1.9e+02 Score=27.97 Aligned_cols=104 Identities=28% Similarity=0.347 Sum_probs=62.4
Q ss_pred hhhccCCCChhhHH--------HHhhHHHHHHHHhhhchHHHhHh--------hhhh---hhhhHHhhhhhhhccccchH
Q 010719 293 KKLLSYGDSPEVHA--------QKVDKLKVLSESLSNSSVKAEKR--------ISDH---RSQKEEALKVRVVKANESSE 353 (503)
Q Consensus 293 kk~~~~Gdspe~ha--------~kvdkLkvlsEsLanS~skAEkr--------I~d~---R~QKEeAl~fRv~K~~Ev~~ 353 (503)
.+-+.||-+|+.+- +-=|||+++- .++.-.-+.. -+-. .+|. +=+..||.+..+-.+
T Consensus 20 ee~~~n~~GpeFYl~~~S~sW~eVEdkLraIl---~d~~Vp~~~K~ACaWsaLALgVR~A~RQ~-q~q~~rV~~Lqd~~~ 95 (152)
T PF15186_consen 20 EEMLRNGGGPEFYLENRSLSWEEVEDKLRAIL---EDSQVPREAKRACAWSALALGVRFAARQR-QLQARRVQWLQDQAE 95 (152)
T ss_pred HHHHhcCCCchHHHHhccCCHHHHHHHHHHHH---hCccCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34467888999773 3457888753 3322211111 0111 1222 224456666555333
Q ss_pred H-HHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH
Q 010719 354 K-EKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQF 400 (503)
Q Consensus 354 ~-Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqF 400 (503)
. +-.--+=.+.|.+-+++-|-|-|++-.+|-.+++.|..+..|||..
T Consensus 96 ~hksa~~aLas~L~~Lr~q~e~e~keaa~qL~~~~a~L~~v~~ERD~L 143 (152)
T PF15186_consen 96 EHKSAAWALASELKRLREQREMERKEAAFQLQLTQAALQEVQKERDLL 143 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2222334456666777778888999999999999999999999864
No 186
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=24.73 E-value=4.6e+02 Score=22.69 Aligned_cols=66 Identities=17% Similarity=0.291 Sum_probs=41.0
Q ss_pred HhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhHHHHHHHhhHhhHHHhhhHHHHHHhhhhHH
Q 010719 392 NAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEE 460 (503)
Q Consensus 392 ~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~vv~tWinFLedtW~lq~~~~e~kekq~~de 460 (503)
+...|...|+.|-......|+.-.+.+..... ..+++++.+-+-+|+|.=..+.-+..+.+.. |-|
T Consensus 32 ~~~~E~~rl~~Al~~~~~eL~~l~~~~~~~~~--~~~a~If~ah~~~L~D~~l~~~v~~~I~~~~-~Ae 97 (123)
T PF05524_consen 32 DIEAEIERLEQALEKAREELEQLAERAESKLG--EEEAAIFEAHLMMLEDPELIDEVEELIREGK-NAE 97 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH--SSCTHHHHHHHHHHT-HHHHHHHHHHHHHH---HH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHhcCHhHHHHHHHHHhccC-CHH
Confidence 45556666666666666555444444333332 4567899999999999888777777776665 543
No 187
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=24.65 E-value=5.5e+02 Score=23.89 Aligned_cols=65 Identities=18% Similarity=0.269 Sum_probs=44.3
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHH
Q 010719 351 SSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELL 419 (503)
Q Consensus 351 v~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELs 419 (503)
++.+=|+|..-|+.|..+.|+..+--+.+...++..+.-+.+.+.+=+.+ ++++.-|..|.+++.
T Consensus 59 l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v----~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 59 LSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSV----QQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 34555677777888888888887777777777777777777776665554 345555666655543
No 188
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=24.62 E-value=2.2e+02 Score=25.94 Aligned_cols=55 Identities=25% Similarity=0.328 Sum_probs=37.6
Q ss_pred HHhhHHHHHHHHhhhchHHHhHhhhhhhhhhHHhhhhhh-----hccccchHHHHHHHHHHHHHHHh
Q 010719 307 QKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRV-----VKANESSEKEKEIGAEISELVKQ 368 (503)
Q Consensus 307 ~kvdkLkvlsEsLanS~skAEkrI~d~R~QKEeAl~fRv-----~K~~Ev~~~Ekel~~EI~~Lekq 368 (503)
.|..+||- +=..|++-|-+.|.|||+-++--. ........++++...+|..+.+.
T Consensus 28 ~r~~RLKq-------AK~EA~~EI~~yr~~kE~ef~~~ea~~~g~~~~~~~~l~~et~~ki~~ik~~ 87 (113)
T TIGR01147 28 RKTKRLKQ-------AKEEAQKEVEKYKQQREKEFKEFEAKHLGGNGAAEEKAEAETQAKIREIKKA 87 (113)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 46777776 556789999999999998776433 33344555666666666666543
No 189
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.33 E-value=2.6e+02 Score=32.30 Aligned_cols=65 Identities=32% Similarity=0.404 Sum_probs=46.3
Q ss_pred hhhchhHHHHHHhhhhhhhhHHHHHHHhhHhhHHHhhhHHHHHHhhhhHHHhhhHhHHHHHHHHHH-------HHHHHhh
Q 010719 411 LKTKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLL-------SAYKKEL 483 (503)
Q Consensus 411 Lk~KedELsksi~sc~vEA~vv~tWinFLedtW~lq~~~~e~kekq~~deler~~~~f~~l~~~~l-------s~~ke~l 483 (503)
|+-|-++--..|+.|+-|-.-|..-..||++. |.|.+|+| +.|++|..-.+.+...+| -.||+||
T Consensus 593 l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R------~eea~e~q--e~L~~~~~~L~~~~~~~lp~l~~AErdFk~El 664 (741)
T KOG4460|consen 593 LCDQKKKQLQDLSYCREERKSLREMAERLADR------YEEAKEKQ--EDLMNRMKKLLHSFHSELPVLSDAERDFKKEL 664 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhH--HHHHHHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 44445555567788888888888888999885 78888887 678888777766655443 2466665
No 190
>PRK00106 hypothetical protein; Provisional
Probab=24.21 E-value=1e+03 Score=26.97 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=7.8
Q ss_pred hhhhHHHhhhHhHHHHHHH
Q 010719 455 KQVSEELVKHEDYFVNLAI 473 (503)
Q Consensus 455 kq~~deler~~~~f~~l~~ 473 (503)
.++..+-++....-+-.++
T Consensus 195 ~~a~~~a~~~a~~ii~~ai 213 (535)
T PRK00106 195 REVKDRSDKMAKDLLAQAM 213 (535)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333
No 191
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=24.13 E-value=2.3e+02 Score=22.29 Aligned_cols=28 Identities=29% Similarity=0.537 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 010719 352 SEKEKEIGAEISELVKQRDHLEAELKKV 379 (503)
Q Consensus 352 ~~~Ekel~~EI~~LekqrdeLEAeLkkV 379 (503)
..--.++..+|..|.++.++|+.+++++
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344566777777888888888888777
No 192
>PRK10203 hypothetical protein; Provisional
Probab=24.11 E-value=4.6e+02 Score=24.32 Aligned_cols=71 Identities=17% Similarity=0.241 Sum_probs=50.9
Q ss_pred hhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHH---HHHHhHHHHHHHHHHHHhHHHHHHHH-HhhHHHHHHh
Q 010719 341 LKVRVVKANESSEKEKEIGAEISELVKQRDHLEAE---LKKVNLSLAAAQARLRNAQEEREQFD-EANDQIVEHL 411 (503)
Q Consensus 341 l~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAe---LkkVn~sL~aA~aRl~~~rEERdqFd-EAnnqIv~hL 411 (503)
..||+-|.+-+---|-++..||..|..-.+.++++ -.++...|+.-.+|+..+.+.|+-|. +=-++|...|
T Consensus 45 ~~~rilknag~lP~el~LrKE~~~l~~~l~~~~d~~~~~~~~~k~L~~l~lr~~~~~~~~~~~~~~Y~~ki~~kl 119 (122)
T PRK10203 45 AGYRLLKNAGCLPPELEQRREAIQLLDLLKGIREDDPQYQEVSRRLSLLELKLRQAGLSTDFLRGDYADKLLNKI 119 (122)
T ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 34666677767777888888888888877777642 23678888889999999998888774 3444554444
No 193
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=24.07 E-value=6.6e+02 Score=30.46 Aligned_cols=93 Identities=29% Similarity=0.204 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhH---HH
Q 010719 357 EIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDV---LS 433 (503)
Q Consensus 357 el~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~v---v~ 433 (503)
.+..|++.|++.++.|..||.+++. + .+.+ .|||-|=.-.--.-+.-|+.|-.+-.+-|....++.++ +.
T Consensus 513 ~le~e~~~le~E~~~l~~el~~~~~-~---~~kl---~eer~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~ 585 (913)
T KOG0244|consen 513 TLEAEKSPLESERSRLRNELNVFNR-L---AAKL---GEERVQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLL 585 (913)
T ss_pred hHHHHhcccccccHHHHHHHHhhhH-H---HHHh---hhHHHHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHH
Confidence 4567888999999999999999998 2 2233 44444444444456677777777777777776666655 45
Q ss_pred HHHHhhHh-hHHHhhhHHHHHHhh
Q 010719 434 TWINFLED-SWVLQCSQMELKEKQ 456 (503)
Q Consensus 434 tWinFLed-tW~lq~~~~e~kekq 456 (503)
+||--++. +=.|++-..+-.+|.
T Consensus 586 ~ei~~~k~~kv~l~~~~~~d~ekf 609 (913)
T KOG0244|consen 586 QEIHIAKGQKVQLLRVMKEDAEKF 609 (913)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHH
Confidence 77777664 334666555555543
No 194
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=24.04 E-value=4.7e+02 Score=22.58 Aligned_cols=61 Identities=20% Similarity=0.206 Sum_probs=36.5
Q ss_pred hhhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhH
Q 010719 334 RSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQ 394 (503)
Q Consensus 334 R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~r 394 (503)
|++-.....-=..|-.+....+..+..+=..|.++...|+..+-+.+.-|....++...+.
T Consensus 6 kre~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~ 66 (126)
T PF13863_consen 6 KREMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAE 66 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3333333333345666666666777777777777777777777776666665555554443
No 195
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=23.95 E-value=1.2e+03 Score=27.10 Aligned_cols=42 Identities=21% Similarity=0.131 Sum_probs=26.4
Q ss_pred hhhhhhhhHHHHHHHhhHhhHHHhhhHHHHHHhhhhHHHhhh
Q 010719 423 AACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKH 464 (503)
Q Consensus 423 ~sc~vEA~vv~tWinFLedtW~lq~~~~e~kekq~~deler~ 464 (503)
..|+.|+.-+..=++=|.-+=.-+-+-.+...+.++.||++.
T Consensus 488 ~k~~~E~e~le~~l~~l~l~~~~~m~~a~~~v~s~e~el~~~ 529 (581)
T KOG0995|consen 488 KKCRKEIEKLEEELLNLKLVLNTSMKEAEELVKSIELELDRM 529 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666555555555666667777777777664
No 196
>PF13514 AAA_27: AAA domain
Probab=23.79 E-value=1.3e+03 Score=27.66 Aligned_cols=85 Identities=22% Similarity=0.363 Sum_probs=37.5
Q ss_pred HHhhhchhHHHHHHhhhhhhhhHHHHHHHhhHhhHHHhhhHHHH--HHhhhhHHHhhhHhHH--HHHHHH----HHHHHH
Q 010719 409 EHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMEL--KEKQVSEELVKHEDYF--VNLAIS----LLSAYK 480 (503)
Q Consensus 409 ~hLk~KedELsksi~sc~vEA~vv~tWinFLedtW~lq~~~~e~--kekq~~deler~~~~f--~~l~~~----~ls~~k 480 (503)
..|+.+.++|...+..+..+-.-++.=|.-|++. ..|.+. +-.....+|++....+ +.++.+ .+..|.
T Consensus 899 ~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~----~~~a~l~~e~e~~~a~l~~~~~~~~~~~la~~lL~~a~~~~r 974 (1111)
T PF13514_consen 899 EELEEELEELEEELEELQEERAELEQELEALEGD----DDAAELEQEREEAEAELEELAEEWAALRLAAELLEEAIERYR 974 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444445555442 222221 2222333343333322 233333 344455
Q ss_pred Hh-hchhhHHHHHHHHhh
Q 010719 481 KE-LGPSISRIGKFVENL 497 (503)
Q Consensus 481 e~-l~~~i~~i~~~v~nl 497 (503)
+. ..|.+.+...|..-|
T Consensus 975 ~~~~p~vl~~As~~f~~L 992 (1111)
T PF13514_consen 975 EERQPPVLARASEYFSRL 992 (1111)
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 44 566677776666544
No 197
>PRK09343 prefoldin subunit beta; Provisional
Probab=23.61 E-value=2e+02 Score=25.88 Aligned_cols=30 Identities=20% Similarity=0.291 Sum_probs=25.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHHHHHHHH
Q 010719 360 AEISELVKQRDHLEAELKKVNLSLAAAQAR 389 (503)
Q Consensus 360 ~EI~~LekqrdeLEAeLkkVn~sL~aA~aR 389 (503)
.+|..|+++.+.|+.++++...+|..+...
T Consensus 85 ~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 85 LRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999998888776543
No 198
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=23.53 E-value=1.5e+02 Score=25.04 Aligned_cols=33 Identities=36% Similarity=0.372 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHH
Q 010719 357 EIGAEISELVKQRDHLEAELKKVNLSLAAAQAR 389 (503)
Q Consensus 357 el~~EI~~LekqrdeLEAeLkkVn~sL~aA~aR 389 (503)
||..-|.-|+....-|+|||+|-..+-.+|.+=
T Consensus 29 El~eRIalLq~EIeRlkAe~~kK~~srsAAeaL 61 (65)
T COG5509 29 ELEERIALLQAEIERLKAELAKKKASRSAAEAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHH
Confidence 455567777777778888888888777777653
No 199
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=23.47 E-value=1.2e+02 Score=35.79 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHHHHH----HHHHHHhHHHHHHHHH
Q 010719 357 EIGAEISELVKQRDHLEAELKKVNLSLAAA----QARLRNAQEEREQFDE 402 (503)
Q Consensus 357 el~~EI~~LekqrdeLEAeLkkVn~sL~aA----~aRl~~~rEERdqFdE 402 (503)
.+.+|+..|+|+.+.|+.|+++++..|+.. .|--.....||....+
T Consensus 926 d~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~ 975 (995)
T PTZ00419 926 DLKKELAKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDE 975 (995)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHH
Confidence 367899999999999999999998888642 2333444444544443
No 200
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=23.36 E-value=3.3e+02 Score=23.99 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=22.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHH----hHHHHHHHHH
Q 010719 360 AEISELVKQRDHLEAELKKVNLSLAAAQARLRN----AQEEREQFDE 402 (503)
Q Consensus 360 ~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~----~rEERdqFdE 402 (503)
+|+..+..+.|.|..-|-.++.+-..-+++|+. .|+.|.+|.+
T Consensus 26 ~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~ 72 (83)
T PF03670_consen 26 EEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQE 72 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555554444444443 3555666544
No 201
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=23.29 E-value=4.7e+02 Score=22.26 Aligned_cols=46 Identities=30% Similarity=0.360 Sum_probs=20.0
Q ss_pred hhhhhhhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHH
Q 010719 330 ISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSL 383 (503)
Q Consensus 330 I~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL 383 (503)
|.+|.---.+++.-|. .-.....+|-.|..++-+|..++..++..-
T Consensus 7 ir~n~e~v~~~l~~R~--------~~~~~vd~i~~ld~~~r~l~~~~e~lr~~r 52 (108)
T PF02403_consen 7 IRENPEEVRENLKKRG--------GDEEDVDEIIELDQERRELQQELEELRAER 52 (108)
T ss_dssp HHHHHHHHHHHHHHTT--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHcC--------CCHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555554 112234444444444444444444433333
No 202
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=23.27 E-value=2.4e+02 Score=23.59 Aligned_cols=36 Identities=33% Similarity=0.503 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHH
Q 010719 356 KEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLR 391 (503)
Q Consensus 356 kel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~ 391 (503)
|-|.+.+.+++++.++|-..+.++...+.....|++
T Consensus 36 KKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 36 KKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444555555555555555555555444444443
No 203
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=23.18 E-value=1.8e+02 Score=32.55 Aligned_cols=62 Identities=34% Similarity=0.348 Sum_probs=42.5
Q ss_pred HHHhHhhhhh-h---hhhHHhhhhhhhccccchHHHHHHH---HHHHHHHHhHHH-------HHHHHHHHhHHHHH
Q 010719 324 VKAEKRISDH-R---SQKEEALKVRVVKANESSEKEKEIG---AEISELVKQRDH-------LEAELKKVNLSLAA 385 (503)
Q Consensus 324 skAEkrI~d~-R---~QKEeAl~fRv~K~~Ev~~~Ekel~---~EI~~Lekqrde-------LEAeLkkVn~sL~a 385 (503)
+|||.||+-. | +-|+.|+-=|-+|-.-+.+.|.-|. +|=++|.++..+ |-+||+|..+.+.+
T Consensus 243 TKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q 318 (472)
T KOG0709|consen 243 TKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVIQ 318 (472)
T ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHhh
Confidence 6788877765 3 3578888889888888888887553 355555555555 45677777666543
No 204
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=23.13 E-value=3.8e+02 Score=30.71 Aligned_cols=114 Identities=24% Similarity=0.244 Sum_probs=84.4
Q ss_pred HHHhhHHHHHHH---HhhhchHHHhHhhhhhhhhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHH
Q 010719 306 AQKVDKLKVLSE---SLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLS 382 (503)
Q Consensus 306 a~kvdkLkvlsE---sLanS~skAEkrI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~s 382 (503)
.+|++-|-+.-| .|-|-..++.+.|..+|-+||+ ++--..+....-.++.+|..+|+-+-.|+++.|.....-
T Consensus 222 ~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekee----l~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeE 297 (596)
T KOG4360|consen 222 QSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEE----LDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEE 297 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666655 4667788999999999999997 566678888899999999999999999998877765554
Q ss_pred HHHH--------------------------HHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhh
Q 010719 383 LAAA--------------------------QARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRV 427 (503)
Q Consensus 383 L~aA--------------------------~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~v 427 (503)
|+-+ .-.+.-|-++--|.||+.. .+.+++|+=-+.|=+|--
T Consensus 298 Lk~lrs~~~p~~~s~~~~~~~~~fp~~~~aae~i~lt~r~~~qldee~s----~~~t~~~~eq~~I~e~ve 364 (596)
T KOG4360|consen 298 LKCLRSCDAPKLISQEALSHGHHFPQLSLAAEKIELTMRKNLQLDEEAS----QLDTLEDEEQKRIFETVE 364 (596)
T ss_pred HHhhccCCCcchhHHHHHHhhhhCChhhHHHHHHHHhhhhhhccccccc----cCCccchHHHHHHHHHHH
Confidence 4433 2234445556667777654 467888888888877743
No 205
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=23.12 E-value=6.5e+02 Score=23.81 Aligned_cols=132 Identities=21% Similarity=0.156 Sum_probs=94.2
Q ss_pred ccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhh
Q 010719 347 KANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACR 426 (503)
Q Consensus 347 K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~ 426 (503)
|--.|...-|++..+-+-|+.+..-||++|..+...+..+..-.-|.+. -+..|+.+...++.....-.
T Consensus 4 K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~-----------eie~L~~el~~lt~el~~L~ 72 (140)
T PF10473_consen 4 KFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKA-----------EIETLEEELEELTSELNQLE 72 (140)
T ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 4456778889999999999999999999999999888877776666554 47789999999999888888
Q ss_pred hhhhHHHHHHHhhHhhHHHhhhHHHHHHhhhhHHHhhhHhHHHHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 010719 427 VESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPSISRIGKFVENL 497 (503)
Q Consensus 427 vEA~vv~tWinFLedtW~lq~~~~e~kekq~~deler~~~~f~~l~~~~ls~~ke~l~~~i~~i~~~v~nl 497 (503)
.|-+.+..=-.-|.- + =++.+.--.|||.+...|.+++.-.=....+....+=..+..+-..|
T Consensus 73 ~EL~~l~sEk~~L~k----~----lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~~ve~L~~ql 135 (140)
T PF10473_consen 73 LELDTLRSEKENLDK----E----LQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEESKSAVEMLQKQL 135 (140)
T ss_pred HHHHHHHHHHHHHHH----H----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877643322211 1 12333345789999999999988776665555544444444333333
No 206
>PRK11115 transcriptional regulator PhoU; Provisional
Probab=23.06 E-value=6.4e+02 Score=23.78 Aligned_cols=25 Identities=16% Similarity=0.208 Sum_probs=19.7
Q ss_pred hhhHHHhhhHhHHHHHHHHHHHHHH
Q 010719 456 QVSEELVKHEDYFVNLAISLLSAYK 480 (503)
Q Consensus 456 q~~deler~~~~f~~l~~~~ls~~k 480 (503)
.+..+|||.+||-.+++.+....++
T Consensus 94 ~i~~~lERIgD~~~nia~~~~~~~~ 118 (236)
T PRK11115 94 KTIADLERIGDVADKIARTALEKFS 118 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4578999999999999976665444
No 207
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=22.99 E-value=7.3e+02 Score=24.35 Aligned_cols=123 Identities=23% Similarity=0.256 Sum_probs=62.0
Q ss_pred hhhchHHHhHhhhhhhhhhHHhh---hhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 010719 319 LSNSSVKAEKRISDHRSQKEEAL---KVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQE 395 (503)
Q Consensus 319 LanS~skAEkrI~d~R~QKEeAl---~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rE 395 (503)
|-|.....+-||.+.-.|..+|- .=...|-.|+...-.-+-.++...+.+-+.+|..++.++..|......++....
T Consensus 83 lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~ 162 (237)
T PF00261_consen 83 LENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEA 162 (237)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhh
Confidence 33333444444444433333332 223456667777777777777777777777777777777777666666665443
Q ss_pred HHHHHHHhhH---HHHHHhhhchhHHHHHHhhhhhhhhHHHHHHHhhHh
Q 010719 396 EREQFDEAND---QIVEHLKTKEDELLKSIAACRVESDVLSTWINFLED 441 (503)
Q Consensus 396 ERdqFdEAnn---qIv~hLk~KedELsksi~sc~vEA~vv~tWinFLed 441 (503)
--.++.+-.+ .=|.+|..+..+...+...-......+..=|.-|++
T Consensus 163 ~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~ 211 (237)
T PF00261_consen 163 SEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLED 211 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322111 123444444444443333333333334444444444
No 208
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=22.97 E-value=75 Score=29.14 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q 010719 357 EIGAEISELVKQRDHLEAELKK 378 (503)
Q Consensus 357 el~~EI~~LekqrdeLEAeLkk 378 (503)
++..+|..|+.|...||++|++
T Consensus 87 ~l~~rvd~Lerqv~~Lenk~kr 108 (108)
T COG3937 87 ELTERVDALERQVADLENKLKR 108 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 5778899999999999998874
No 209
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=22.76 E-value=5.2e+02 Score=22.61 Aligned_cols=26 Identities=8% Similarity=0.035 Sum_probs=10.0
Q ss_pred hHHHhhhHhHHHHHHHHHHHHHHHhh
Q 010719 458 SEELVKHEDYFVNLAISLLSAYKKEL 483 (503)
Q Consensus 458 ~deler~~~~f~~l~~~~ls~~ke~l 483 (503)
.+.+....+.+-+.+......++..|
T Consensus 150 ~~~i~~~~~~l~~~l~~~~~~l~~~l 175 (202)
T PF01442_consen 150 EAKISERLEELRESLEEKAEELKETL 175 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 210
>PF13514 AAA_27: AAA domain
Probab=22.58 E-value=1.4e+03 Score=27.48 Aligned_cols=59 Identities=15% Similarity=0.268 Sum_probs=31.4
Q ss_pred HhhhchhHHHHHHhhhhhhhhHHHHHHHhhHhhHHHhhhHHHHHHhhhhHHHhhhHhHHHHHHHH
Q 010719 410 HLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAIS 474 (503)
Q Consensus 410 hLk~KedELsksi~sc~vEA~vv~tWinFLedtW~lq~~~~e~kekq~~deler~~~~f~~l~~~ 474 (503)
.+..+..++...|... +..|+..--..-.|+......++.....=|.+...||-.|+..
T Consensus 937 ~l~~e~e~~~a~l~~~------~~~~~~~~la~~lL~~a~~~~r~~~~p~vl~~As~~f~~LT~G 995 (1111)
T PF13514_consen 937 ELEQEREEAEAELEEL------AEEWAALRLAAELLEEAIERYREERQPPVLARASEYFSRLTGG 995 (1111)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCC
Confidence 3444444444444433 2334333333333444445555555555577888999988864
No 211
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=22.49 E-value=5.8e+02 Score=23.05 Aligned_cols=56 Identities=18% Similarity=0.167 Sum_probs=25.1
Q ss_pred hhhhhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHH
Q 010719 332 DHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLR 391 (503)
Q Consensus 332 d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~ 391 (503)
.+..+.|+...-.-++..+.... ...+..|+.+.++++.++.-+....+++...++
T Consensus 49 r~~~~~e~l~~~~~~l~~d~~~l----~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~ 104 (151)
T PF11559_consen 49 RDMEQREDLSDKLRRLRSDIERL----QNDVERLKEQLEELERELASAEEKERQLQKQLK 104 (151)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433333344444333 334455555555555555554444444444443
No 212
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=22.42 E-value=2.7e+02 Score=31.16 Aligned_cols=12 Identities=33% Similarity=0.440 Sum_probs=5.0
Q ss_pred HhHHHHHHHHHH
Q 010719 367 KQRDHLEAELKK 378 (503)
Q Consensus 367 kqrdeLEAeLkk 378 (503)
+++.++++.|++
T Consensus 97 aq~~dle~KIke 108 (475)
T PRK13729 97 KQRGDDQRRIEK 108 (475)
T ss_pred hhhhhHHHHHHH
Confidence 444444444443
No 213
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=22.35 E-value=6.2e+02 Score=23.37 Aligned_cols=57 Identities=30% Similarity=0.337 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhH-HHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHh
Q 010719 355 EKEIGAEISELVKQR-DHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHL 411 (503)
Q Consensus 355 Ekel~~EI~~Lekqr-deLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hL 411 (503)
.+.+.+.|..++.+. .++.+.|...+..+.+....|+..+....+..++....+..|
T Consensus 10 ~~~~~a~~~e~e~~~~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l 67 (136)
T PF04871_consen 10 EKQLAAKILELETKLKSQAESSLEQENKRLEAEEKELKEAEQAAEAELEELASEVKEL 67 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667776655 666777777777777775555554444443333333333333
No 214
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=22.33 E-value=8.2e+02 Score=24.70 Aligned_cols=55 Identities=16% Similarity=0.298 Sum_probs=47.0
Q ss_pred HHHHHHhhHhhHHHhhhHHHHHHhhhhHHHhhhHhHHHHHHHHHHHHHHHhhchhhHHHHHHH
Q 010719 432 LSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPSISRIGKFV 494 (503)
Q Consensus 432 v~tWinFLedtW~lq~~~~e~kekq~~deler~~~~f~~l~~~~ls~~ke~l~~~i~~i~~~v 494 (503)
+.--..||+| .-+|-|++..|-.|.+-|=..++.+=++.|...|...=.+....+
T Consensus 74 LRdLCCFLDd--------dRqKgrklarEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~ 128 (195)
T PF10226_consen 74 LRDLCCFLDD--------DRQKGRKLAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELI 128 (195)
T ss_pred HHHHHcccch--------hHHHhHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455689999 678999999999999999999999999999999988766665555
No 215
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=22.32 E-value=4e+02 Score=21.51 Aligned_cols=50 Identities=20% Similarity=0.185 Sum_probs=34.7
Q ss_pred HHHHHHhhhchhHHHHHHhhhhhhhhHHHHHHHhhHhhHHHhhhHHHHHH
Q 010719 405 DQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKE 454 (503)
Q Consensus 405 nqIv~hLk~KedELsksi~sc~vEA~vv~tWinFLedtW~lq~~~~e~ke 454 (503)
.++...+..+..++.+....-..+--.+=+++|+.++--.+|..+.+..+
T Consensus 24 ~~~a~~i~~~i~~~~~~~~~~~~~~~~vlaaLnla~e~~~~~~~~~~~~~ 73 (89)
T PF05164_consen 24 RKAAELINEKINEIKKKYPKLSPERLAVLAALNLADELLKLKRELDELEE 73 (89)
T ss_dssp HHHHHHHHHHHHHHCTTCCTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555556666665555556666788999999998888887776665
No 216
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=22.13 E-value=6.5e+02 Score=27.98 Aligned_cols=84 Identities=25% Similarity=0.271 Sum_probs=53.7
Q ss_pred HHHhhHHHHHHHHhhhchHHHhHhhhhhhhhhHHhhhh-hh------hccccchHHHHHH-----------HHHHHHHHH
Q 010719 306 AQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKV-RV------VKANESSEKEKEI-----------GAEISELVK 367 (503)
Q Consensus 306 a~kvdkLkvlsEsLanS~skAEkrI~d~R~QKEeAl~f-Rv------~K~~Ev~~~Ekel-----------~~EI~~Lek 367 (503)
.-+-.|.-+|+.+|-..+.-.=+--.|-++||+++-.- |. +=..|..+-|.-+ ..|=..|.|
T Consensus 277 ~~m~tKveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrk 356 (442)
T PF06637_consen 277 KIMTTKVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRK 356 (442)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566888888888888777777777889999887543 21 1112222222222 235567888
Q ss_pred hHHHHHHHHHHHhHHHHHHHHH
Q 010719 368 QRDHLEAELKKVNLSLAAAQAR 389 (503)
Q Consensus 368 qrdeLEAeLkkVn~sL~aA~aR 389 (503)
.||-|+.||..-...+.+....
T Consensus 357 erd~L~keLeekkreleql~~q 378 (442)
T PF06637_consen 357 ERDSLAKELEEKKRELEQLKMQ 378 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887776666554443
No 217
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.03 E-value=5.4e+02 Score=26.84 Aligned_cols=140 Identities=21% Similarity=0.187 Sum_probs=65.9
Q ss_pred hHHHhHhhhhhhhhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHH-----H
Q 010719 323 SVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEE-----R 397 (503)
Q Consensus 323 ~skAEkrI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEE-----R 397 (503)
..+.|.-|.+.-..+-++.+==...-+.+ -++..+|..++++.|++.+++|+.+..+.....|+..-.+- |
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi----~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raR 108 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQI----EEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRAR 108 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666655544444443211111111 13445566666666666666666666666666555432221 2
Q ss_pred HHHHHhhHH--HHHHhhhchhHHHHHHhhhhhhhhHHHHHHHhhHhhHHHhhhHHHHHHhhhhHHHhhhHhHHH
Q 010719 398 EQFDEANDQ--IVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFV 469 (503)
Q Consensus 398 dqFdEAnnq--Iv~hLk~KedELsksi~sc~vEA~vv~tWinFLedtW~lq~~~~e~kekq~~deler~~~~f~ 469 (503)
.-.--+..+ |=.-|.+| -++--|.+-.+=+.||..=-+-|++-=.=|-. -+.|+..++|+++...-.-.
T Consensus 109 Amq~nG~~t~Yidvil~Sk--SfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~-Le~kq~~l~~~~e~l~al~~ 179 (265)
T COG3883 109 AMQVNGTATSYIDVILNSK--SFSDLISRVTAISVIVDADKKILEQQKEDKKS-LEEKQAALEDKLETLVALQN 179 (265)
T ss_pred HHHHcCChhHHHHHHHccC--cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 222222211 22223322 34445555555555665555556553322222 23344556777766544433
No 218
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=21.99 E-value=1.7e+02 Score=24.78 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=27.8
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHH
Q 010719 351 SSEKEKEIGAEISELVKQRDHLEAELKKVNLSLA 384 (503)
Q Consensus 351 v~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~ 384 (503)
.+..-+++.++|..|+.++..+.++++-++..+.
T Consensus 68 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 68 DSPELKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888999999999999999888887664
No 219
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=21.76 E-value=4.4e+02 Score=23.54 Aligned_cols=52 Identities=25% Similarity=0.399 Sum_probs=26.5
Q ss_pred HHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHh------hhchhHHHHHHhhhh
Q 010719 366 VKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHL------KTKEDELLKSIAACR 426 (503)
Q Consensus 366 ekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hL------k~KedELsksi~sc~ 426 (503)
..++.++|.+..+++.-|-.=.+.| |+|||+=+-..- +.|.+.|.+.+..+.
T Consensus 7 ~~~r~~ae~~~~~ie~ElEeLTasL---------FeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~ 64 (100)
T PF06428_consen 7 RERREEAEQEKEQIESELEELTASL---------FEEANKMVADARRERAALEEKNEQLEKQLKEKE 64 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666555544443 666665543332 244444444444443
No 220
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=21.76 E-value=2.4e+02 Score=23.33 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhH
Q 010719 362 ISELVKQRDHLEAELKKVNLSLAAAQARLRNAQ 394 (503)
Q Consensus 362 I~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~r 394 (503)
+.+|+.+...|++|..++...+....+-..-+.
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~a~r~AAe 55 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKSASRAAAE 55 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 221
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=21.74 E-value=3.4e+02 Score=30.31 Aligned_cols=30 Identities=27% Similarity=0.409 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhHHHHH
Q 010719 356 KEIGAEISELVKQRDHLEAELKKVNLSLAA 385 (503)
Q Consensus 356 kel~~EI~~LekqrdeLEAeLkkVn~sL~a 385 (503)
+.+..||..||++.++||++++.++..|+.
T Consensus 559 ~~~~~~~~~~e~~i~~le~~~~~l~~~l~~ 588 (638)
T PRK10636 559 QPLRKEIARLEKEMEKLNAQLAQAEEKLGD 588 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334445555666666666666666555543
No 222
>PRK11377 dihydroxyacetone kinase subunit M; Provisional
Probab=21.71 E-value=6.1e+02 Score=28.01 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=10.1
Q ss_pred eeEeeecCCCCCCcch
Q 010719 125 LVLYYDADFGGEPLNF 140 (503)
Q Consensus 125 ~vlf~D~d~gGePmnF 140 (503)
.+.||| .|...||=
T Consensus 65 v~v~~D--lGSa~~~~ 78 (473)
T PRK11377 65 VLVMMD--MGSALLSA 78 (473)
T ss_pred EEEEEe--cchHHhHH
Confidence 566888 77777764
No 223
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=21.66 E-value=5.5e+02 Score=24.07 Aligned_cols=58 Identities=21% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHH
Q 010719 365 LVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSI 422 (503)
Q Consensus 365 LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi 422 (503)
|++|++.....|...+.....|..++...++...+...-..+|+..-+.+-+.....+
T Consensus 56 L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~ 113 (184)
T PRK13455 56 LDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQAAAEQA 113 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 224
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=21.62 E-value=3.9e+02 Score=26.40 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=10.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhHH
Q 010719 371 HLEAELKKVNLSLAAAQARLRNAQE 395 (503)
Q Consensus 371 eLEAeLkkVn~sL~aA~aRl~~~rE 395 (503)
.++++++..+..+..|.+++..++.
T Consensus 105 ~~~~~i~~~~~~~~~a~~~l~~a~~ 129 (334)
T TIGR00998 105 QLQAKVESLKIKLEQAREKLLQAEL 129 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3334444444444444444444333
No 225
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=21.57 E-value=2.9e+02 Score=31.44 Aligned_cols=73 Identities=25% Similarity=0.419 Sum_probs=47.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhHHHHHHHh
Q 010719 359 GAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINF 438 (503)
Q Consensus 359 ~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~vv~tWinF 438 (503)
..||..|..++|+|.+|+.|--++..+ ....--||.+.+-- ++..+.|-|+|.++|.+-+-||-.. +.=
T Consensus 343 Eeei~~L~~~~d~L~~q~~kq~Is~e~----fe~mn~Ere~L~re----L~~i~~~~~~L~k~V~~~~leaq~~---~~s 411 (622)
T COG5185 343 EEEIKALQSNIDELHKQLRKQGISTEQ----FELMNQEREKLTRE----LDKINIQSDKLTKSVKSRKLEAQGI---FKS 411 (622)
T ss_pred HHHHHHHHhhHHHHHHHHHhcCCCHHH----HHHHHHHHHHHHHH----HHHhcchHHHHHHHHHhHHHHHHHH---HHH
Confidence 357888888888888888876666432 23334455554432 4556778888888888888777432 344
Q ss_pred hHhh
Q 010719 439 LEDS 442 (503)
Q Consensus 439 Ledt 442 (503)
||+|
T Consensus 412 lek~ 415 (622)
T COG5185 412 LEKT 415 (622)
T ss_pred HHHH
Confidence 5554
No 226
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=21.45 E-value=1.2e+03 Score=26.21 Aligned_cols=56 Identities=21% Similarity=0.264 Sum_probs=38.4
Q ss_pred hhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH
Q 010719 345 VVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQF 400 (503)
Q Consensus 345 v~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqF 400 (503)
+...+|+...-+.+-.=+..|....++|+.++++....+..+......+.+.+.+|
T Consensus 346 ~~~~dEi~~L~~~~n~m~~~l~~~~~~l~~~~~e~~~~l~~~~~~~~~~~~~~~~~ 401 (921)
T PRK15347 346 ENRLDELGSIAKAYNQLLDTLNEQYDTLENKVAERTQALAEAKQRAEQANKRKSEH 401 (921)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457777777777777777777777888777777777766666665555555544
No 227
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=21.42 E-value=1.4e+02 Score=34.64 Aligned_cols=29 Identities=31% Similarity=0.518 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHHHH
Q 010719 357 EIGAEISELVKQRDHLEAELKKVNLSLAA 385 (503)
Q Consensus 357 el~~EI~~LekqrdeLEAeLkkVn~sL~a 385 (503)
.+.+|+..|+|+.+.|+.+++++...|+.
T Consensus 808 d~~~e~~rL~K~l~kl~~ei~~~~~kL~n 836 (874)
T PRK05729 808 DVEAELARLEKELAKLEKEIERVEKKLSN 836 (874)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 36678888888888888888888777764
No 228
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1. This CD includes the terpenoid cyclase, trichodiene synthase, which catalyzes the cyclization of farnesyl diphosphate (FPP) to trichodiene using a cis-trans pathway, and is the first committed step in the biosynthesis of trichothecene toxins and antibiotics. As with other enzymes with the 'terpenoid synthase fold', this enzyme has two conserved metal binding motifs that coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function as homodimers and are found in several genera of fungi.
Probab=21.34 E-value=49 Score=35.49 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHhhchh--hHHHHHHHH
Q 010719 467 YFVNLAISLLSAYKKELGPS--ISRIGKFVE 495 (503)
Q Consensus 467 ~f~~l~~~~ls~~ke~l~~~--i~~i~~~v~ 495 (503)
.|++.++-+||.|||++.|. ++-|..|+.
T Consensus 219 ~~i~~~NDILSFYKEe~~~~E~~n~V~Nya~ 249 (357)
T cd00686 219 NWMVWVNDLMSFYKEFDDERDQISLVKNYVV 249 (357)
T ss_pred HHHHhhhhhhheehhhcccccccchHHHhhh
Confidence 48888999999999999654 776666654
No 229
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=21.24 E-value=4.3e+02 Score=25.95 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=26.1
Q ss_pred cccchHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 010719 348 ANESSEKEKEIGAEISELVKQRDHLEAELKKV 379 (503)
Q Consensus 348 ~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkV 379 (503)
.+.|.+.++++..||.+|+++.+.||.-..+.
T Consensus 115 ~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~ 146 (171)
T PF04799_consen 115 CQQVDQTKNELEDEIKQLEKEIQRLEEIQSKS 146 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999998887654443
No 230
>PF13166 AAA_13: AAA domain
Probab=21.22 E-value=1.1e+03 Score=26.01 Aligned_cols=41 Identities=24% Similarity=0.429 Sum_probs=21.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH
Q 010719 360 AEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQF 400 (503)
Q Consensus 360 ~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqF 400 (503)
.+|..+++....+..++...+..+++..+.+.++..-.+.|
T Consensus 424 ~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~i 464 (712)
T PF13166_consen 424 KEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRI 464 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34555555555555555555555555555555544444444
No 231
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=21.20 E-value=6.2e+02 Score=22.92 Aligned_cols=62 Identities=15% Similarity=0.017 Sum_probs=44.7
Q ss_pred HHhhHhhHHHhhhHHHHHHhhhhHHHhhhHhHHHHHHHHHHHHHHHhhchhhHHHHHHHHhhh
Q 010719 436 INFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPSISRIGKFVENLK 498 (503)
Q Consensus 436 inFLedtW~lq~~~~e~kekq~~deler~~~~f~~l~~~~ls~~ke~l~~~i~~i~~~v~nl~ 498 (503)
...++.+=..|..|.+... ..+.-++.+.-..+.....++..|...++..+..|..+.++..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~-~~~~~~q~~~e~r~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~ 190 (191)
T cd07610 129 REQVEKLNPAQSEYEEEKL-NKIQAEQEREEERLEILKDNLKNYINAIKEIPQKIQQELEQSI 190 (191)
T ss_pred HHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhccc
Confidence 3344444456777776433 3344577777888889999999999999999988888877653
No 232
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=21.20 E-value=3.9e+02 Score=26.32 Aligned_cols=24 Identities=13% Similarity=0.415 Sum_probs=19.5
Q ss_pred hhcCchhHHHHHHHHHHHHHHHhh
Q 010719 71 LSCRGPERVMLLRRWLTVLKEVEK 94 (503)
Q Consensus 71 vscrG~ERvqlLRRWL~aLkeie~ 94 (503)
.+-.+.-|..+.|.|+.+|+++-+
T Consensus 216 ~~~~~~~~~~~~~~y~e~~~~~~~ 239 (262)
T cd03407 216 MTAKDVMDLLLVNQYFDTLKAYGR 239 (262)
T ss_pred ccccchHHHHHHHHHHHHHHHHHh
Confidence 445666788899999999999865
No 233
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=21.17 E-value=6.9e+02 Score=23.50 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHH
Q 010719 357 EIGAEISELVKQRDHLEAELKKVNLSLAAAQARL 390 (503)
Q Consensus 357 el~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl 390 (503)
.+...+..-++.+.+.+..++..+..|..|+...
T Consensus 59 ~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea 92 (184)
T CHL00019 59 TILNTIRNSEERREEAIEKLEKARARLRQAELEA 92 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555554443
No 234
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=21.15 E-value=2.8e+02 Score=24.15 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=25.8
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHH
Q 010719 351 SSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARL 390 (503)
Q Consensus 351 v~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl 390 (503)
+.++.+-+..-|..|+++.+.|+..+++++..++.-..++
T Consensus 84 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l 123 (126)
T TIGR00293 84 AEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEA 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666667777777777777777766666655544
No 235
>PF14661 HAUS6_N: HAUS augmin-like complex subunit 6 N-terminus
Probab=21.06 E-value=6.3e+02 Score=25.06 Aligned_cols=101 Identities=19% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHhhhchHHHh-----HhhhhhhhhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHH
Q 010719 315 LSESLSNSSVKAE-----KRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQAR 389 (503)
Q Consensus 315 lsEsLanS~skAE-----krI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aR 389 (503)
+.-..++.....+ ++|..+|..--..+.=++..-+.....-..|..++.+|..+...++++++.+...-+.....
T Consensus 142 ~~~~~~~~~~~~~~~~~~a~~~~~r~~~~~~~~~~~~~~~~~~~~aq~L~~k~r~l~~~~~~~~~~~~~~~~~~~~~~~~ 221 (247)
T PF14661_consen 142 LRLAEAFRLKPQDLHELLARILAHRNSFLQILQEKDAARQKYQEFAQLLRKKYRELSAECAELQAQLKKLQKSDASNRQL 221 (247)
T ss_pred hhhhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHH
Q ss_pred HHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHH
Q 010719 390 LRNAQEEREQFDEANDQIVEHLKTKEDELLKSI 422 (503)
Q Consensus 390 l~~~rEERdqFdEAnnqIv~hLk~KedELsksi 422 (503)
....+...-.- +.+...|.+++=.+|
T Consensus 222 ~~~~~~~w~~~-------~~~~~~kvr~~W~~~ 247 (247)
T PF14661_consen 222 WEQVRNNWSGS-------LQEKIQKVRELWMKV 247 (247)
T ss_pred HHHHHHhhchh-------hHHHHHHHHHHHhcC
No 236
>PF03836 RasGAP_C: RasGAP C-terminus; InterPro: IPR000593 Ras GTPase-activating protein (rasGAP) is a major contributor to the down-regulation of ras by facilitating GTP hydrolysis of activated ras. In addition, GAP participates in the down-stream effector system of the ras signalling pathway. Abnormal signal transduction involving activated ras genes plays a major role in the development of a variety of tumours. Depending on the precise genetic alteration, its location within the gene and the effects it exerts on protein function, rasGAP can theoretically function as either an oncogene or as a tumour suppressor gene [].; GO: 0005099 Ras GTPase activator activity, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 3ISU_A 3IEZ_A 4EZA_B 1X0H_A.
Probab=20.78 E-value=33 Score=31.25 Aligned_cols=86 Identities=17% Similarity=0.280 Sum_probs=0.0
Q ss_pred hhhhhhhhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHH
Q 010719 329 RISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIV 408 (503)
Q Consensus 329 rI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv 408 (503)
+|+++-.+.|.+= .+...|--..+-.+|..+|......|..-..||+.+...++.-...-.-.++.-+++++--++++
T Consensus 8 ~~l~~l~~LE~~G--~v~~~n~yQ~lln~IA~dI~~~~~~r~~r~~El~~l~~tl~~L~~k~~~l~~ql~~Y~~Yi~~~l 85 (142)
T PF03836_consen 8 KILENLKELESLG--IVSRSNNYQDLLNDIAKDIRNKRRYREQRKQELEKLRQTLKNLNEKNKFLEEQLDSYNEYIKNCL 85 (142)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHCC--CCCCcccHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444332 35666888889999999999999999999999999999999999998999999999999999988
Q ss_pred HHhhhchh
Q 010719 409 EHLKTKED 416 (503)
Q Consensus 409 ~hLk~Ked 416 (503)
..+..+-.
T Consensus 86 ~~~~~~~~ 93 (142)
T PF03836_consen 86 SNLQSKKK 93 (142)
T ss_dssp --------
T ss_pred HHhccCCC
Confidence 88887644
No 237
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=20.55 E-value=9.7e+02 Score=24.90 Aligned_cols=135 Identities=13% Similarity=0.119 Sum_probs=0.0
Q ss_pred HhhhhhhhhhHHhhhhhhhccccchHHHH--------------HHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHh
Q 010719 328 KRISDHRSQKEEALKVRVVKANESSEKEK--------------EIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNA 393 (503)
Q Consensus 328 krI~d~R~QKEeAl~fRv~K~~Ev~~~Ek--------------el~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~ 393 (503)
.++.+...|+..+..-+........+.+. .+..++..++.++.+|.....--+..+-++.+++.++
T Consensus 215 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l 294 (444)
T TIGR03017 215 ARLNELSAQLVAAQAQVMDASSKEGGSSGKDALPEVIANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSL 294 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhhcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Q ss_pred HHHHHH----HHHhhHHHHHHhhhchhHHHHHHhhhhhhhhHHHHHHHhhHhhHHHhhhHHHHHHhhhhHHHhhhHhHHH
Q 010719 394 QEEREQ----FDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFV 469 (503)
Q Consensus 394 rEERdq----FdEAnnqIv~hLk~KedELsksi~sc~vEA~vv~tWinFLedtW~lq~~~~e~kekq~~deler~~~~f~ 469 (503)
+..-++ .-.....-...++.++.+|.+.+...+.+..-+..= ...-.+|+|-.+.--
T Consensus 295 ~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~-------------------~~~~~~L~r~~~~~~ 355 (444)
T TIGR03017 295 KSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKVLELNRQ-------------------RDEMSVLQRDVENAQ 355 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 010719 470 NLAISLLSAYKK 481 (503)
Q Consensus 470 ~l~~~~ls~~ke 481 (503)
++-..+|+.+++
T Consensus 356 ~~y~~ll~r~~e 367 (444)
T TIGR03017 356 RAYDAAMQRYTQ 367 (444)
T ss_pred HHHHHHHHHHHH
No 238
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=20.51 E-value=1.2e+03 Score=25.98 Aligned_cols=7 Identities=43% Similarity=0.695 Sum_probs=2.7
Q ss_pred hchhhHH
Q 010719 483 LGPSISR 489 (503)
Q Consensus 483 l~~~i~~ 489 (503)
|...|.|
T Consensus 188 ~~~aiqr 194 (514)
T TIGR03319 188 LATAIQR 194 (514)
T ss_pred HHHHHHh
Confidence 3333433
No 239
>PF05400 FliT: Flagellar protein FliT; InterPro: IPR008622 This entry represents the bacterial flagellar FliT family of dual-function proteins. Together with FlgN, FliT has been proposed to act as a substrate-specific export chaperone, facilitating the incorporation of the enterobacterial hook-associated axial proteins (HAPs) FlgK/FlgL and FliD into the growing flagellum []. FliT has also been shown to act as a transcriptional regulator in Salmonella typhimurium [].; GO: 0019861 flagellum; PDB: 3A7M_A 3H3M_B 3NKZ_C 2G42_A 2FZT_B.
Probab=20.38 E-value=4.3e+02 Score=20.72 Aligned_cols=70 Identities=24% Similarity=0.319 Sum_probs=45.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH---HhhHHHHHHhhhchhHHHHHHhhhhhhhhHHHH
Q 010719 360 AEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFD---EANDQIVEHLKTKEDELLKSIAACRVESDVLST 434 (503)
Q Consensus 360 ~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFd---EAnnqIv~hLk~KedELsksi~sc~vEA~vv~t 434 (503)
.++..|..+|+.|-.+|.. ..+...-....+.++... +=+.+|...++..-++|.+.+...+.--.+.++
T Consensus 11 e~l~~l~~~R~~ll~~l~~-----~~~~~~~~~~~~~~~~l~~Il~~d~~i~~ll~~~~~~l~~~l~~~~~~~~~~~a 83 (84)
T PF05400_consen 11 EELEELLDERQELLERLFE-----EQAALSPPEQEELRELLRRILELDQEIRALLQARRDELKQELRQLRKGRKANNA 83 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----CHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh-----ccccCChhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7888999999999888877 011111122233333333 345578888899999999888887765555443
No 240
>PRK14164 heat shock protein GrpE; Provisional
Probab=20.37 E-value=8.9e+02 Score=24.41 Aligned_cols=63 Identities=19% Similarity=0.197 Sum_probs=45.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhh
Q 010719 360 AEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAA 424 (503)
Q Consensus 360 ~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~s 424 (503)
.++..|+++.++|...+.++.+-..-.+.| ..+|--+..+-|...++..|=-=.|.|.+.+..
T Consensus 77 ~~~~~le~el~el~d~llR~~AE~eN~RkR--~~rE~e~~~~~a~~~~~~~LLpVlDnLerAl~~ 139 (218)
T PRK14164 77 GEASTVEAQLAERTEDLQRVTAEYANYRRR--TERERQAIIETAKAGVATDLLPILDDLDLAEQH 139 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhc
Confidence 678888899999988887776665555444 344444566667777777777778888888764
No 241
>PF14265 DUF4355: Domain of unknown function (DUF4355)
Probab=20.34 E-value=5.3e+02 Score=22.54 Aligned_cols=35 Identities=40% Similarity=0.483 Sum_probs=23.6
Q ss_pred ccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHH
Q 010719 347 KANESSEKEKEIGAEISELVKQRDHLEAELKKVNLS 382 (503)
Q Consensus 347 K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~s 382 (503)
|...++..|+ -..|+..++++.++|++++.+-+..
T Consensus 37 ~~~k~~~~ek-~~~e~~~~~~el~~~~~e~~~~e~~ 71 (125)
T PF14265_consen 37 KLAKMSAEEK-AQEELEELEKELEELEAELARRELR 71 (125)
T ss_pred HHHhcchhhH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555554 3378888888888888888765544
No 242
>PRK14150 heat shock protein GrpE; Provisional
Probab=20.28 E-value=8.2e+02 Score=23.93 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=27.7
Q ss_pred HHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhHHHHHH
Q 010719 391 RNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWI 436 (503)
Q Consensus 391 ~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~vv~tWi 436 (503)
+..+|--+..+-|...++..|=-=.|.|.+.+.+...+...++.++
T Consensus 74 R~~kE~~~~~~~a~~~~~~~lL~v~DnlerAl~~~~~~~~~~~~~~ 119 (193)
T PRK14150 74 RAEQDVEKAHKFALEKFANELLPVIDNLERALQAADKENEALKALI 119 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhcccccchhHHHHH
Confidence 3334444555667777777777778888888765544444444433
No 243
>PF09236 AHSP: Alpha-haemoglobin stabilising protein; InterPro: IPR015317 Alpha-haemoglobin stabilising protein (AHSP) acts a molecular chaperone for free alpha-haemoglobin, preventing the harmful aggregation of alpha-haemoglobin during normal erythroid cell development: it specifically protects free alpha-haemoglobin from precipitation. AHSP adopts a helical secondary structure consisting of an elongated antiparallel three alpha-helix bundle []. ; GO: 0030492 hemoglobin binding, 0006457 protein folding, 0020027 hemoglobin metabolic process, 0030097 hemopoiesis, 0050821 protein stabilization; PDB: 1Y01_A 1XZY_A 3OVU_A 1W0A_A 3IA3_C 1Z8U_A 1W0B_A 1W09_A.
Probab=20.28 E-value=3.1e+02 Score=24.52 Aligned_cols=50 Identities=22% Similarity=0.415 Sum_probs=30.8
Q ss_pred hhHHHHHHHhhHhhHHHhhhHHHHHHhhhhHHHhhhHhHHHHHHHHHHHHHHH
Q 010719 429 SDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKK 481 (503)
Q Consensus 429 A~vv~tWinFLedtW~lq~~~~e~kekq~~deler~~~~f~~l~~~~ls~~ke 481 (503)
-.||+-|+||-=.-+.-|-+=+++-.+.+-.||.. -+--|+...|..|.-
T Consensus 34 vtvV~DwvnfYINYy~~~~~GeqqeqdrAlqel~q---eL~tla~pFL~Kyr~ 83 (89)
T PF09236_consen 34 VTVVNDWVNFYINYYKKQMTGEQQEQDRALQELQQ---ELNTLANPFLAKYRA 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHTT--SSHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 47899999998877777766555555555555544 344455555555543
No 244
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=20.28 E-value=2.3e+02 Score=28.76 Aligned_cols=49 Identities=27% Similarity=0.347 Sum_probs=34.1
Q ss_pred hHhhhhhhhhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHH
Q 010719 327 EKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAA 385 (503)
Q Consensus 327 EkrI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~a 385 (503)
=+|-.+.|.|++ +|+...=.+|..|-..|..++++|..||.++...+..
T Consensus 206 ~~kSR~~~k~~~----------~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 206 VRKSRDKRKQKE----------DEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred HHHhhhhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666 4444445677778888889999999988887665543
No 245
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=20.15 E-value=1.1e+03 Score=25.16 Aligned_cols=126 Identities=25% Similarity=0.286 Sum_probs=78.0
Q ss_pred CCCChhhHHHHhhHHHHHHHHhhhchHH---HhHhhhhhhhhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHH
Q 010719 298 YGDSPEVHAQKVDKLKVLSESLSNSSVK---AEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEA 374 (503)
Q Consensus 298 ~Gdspe~ha~kvdkLkvlsEsLanS~sk---AEkrI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEA 374 (503)
.|-++..--..+++|--.-++..=+..+ --++|.+-|-+++++ .|..+.+..=+++.+||.++-+...++--
T Consensus 105 ~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~-----~k~~e~~~~~~el~aei~~lk~~~~e~~e 179 (294)
T COG1340 105 GGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDA-----KKALEENEKLKELKAEIDELKKKAREIHE 179 (294)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666656666665544433333222 234566656666554 57788888899999999999999999888
Q ss_pred HHHHHhHHHHHHHHHHHHhH----HHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhHHHHHH
Q 010719 375 ELKKVNLSLAAAQARLRNAQ----EEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWI 436 (503)
Q Consensus 375 eLkkVn~sL~aA~aRl~~~r----EERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~vv~tWi 436 (503)
+++++......-+-.+..+= |=|+.=|+.+..|+. +++.|.+|..|..-+..=|
T Consensus 180 ki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve--------~~~~~~e~~ee~~~~~~el 237 (294)
T COG1340 180 KIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVE--------LSKKIDELHEEFRNLQNEL 237 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHhHHHHHHHHHHHHHH
Confidence 88887776665555544433 344555777777764 3444444444444444333
No 246
>PF11126 Phage_DsbA: Transcriptional regulator DsbA; InterPro: IPR020313 DsbA is a double stranded binding protein found in bacteriophage T4 which is involved in transcriptional regulation. DsbA, along with other viral proteins, interacts with the host RNA polymerase core enzyme enabling initiation of transcription. DsbA acts as an enhancer protein of late genes in vitro. The protein consists of mainly alpha helices [].
Probab=20.10 E-value=75 Score=27.16 Aligned_cols=36 Identities=33% Similarity=0.512 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHH
Q 010719 369 RDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEH 410 (503)
Q Consensus 369 rdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~h 410 (503)
++||-=.=|.-|.-++-=+ .-+|+||++.|+.++..
T Consensus 27 K~ElGv~gk~Fnkl~~lyH------k~~Re~fE~e~ee~~el 62 (69)
T PF11126_consen 27 KDELGVDGKMFNKLLKLYH------KQEREEFEAENEEVVEL 62 (69)
T ss_pred HHHcCCCHHHHHHHHHHHH------HhhHHHHHHHHHHHHHH
Confidence 4566666677776665433 35799999999999864
No 247
>PRK14158 heat shock protein GrpE; Provisional
Probab=20.10 E-value=2e+02 Score=28.36 Aligned_cols=60 Identities=27% Similarity=0.210 Sum_probs=42.8
Q ss_pred hhHHhhhhhhhccccchHH------HHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 010719 336 QKEEALKVRVVKANESSEK------EKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQE 395 (503)
Q Consensus 336 QKEeAl~fRv~K~~Ev~~~------Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rE 395 (503)
|--+||+-...|.-+.-+. .-+...++..|+.+.++|+++++....++--+.|-..|.|.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~Rk 75 (194)
T PRK14158 10 QIAEALKAKAAKEAEAAQGKPEAAQPVAAADRIKELEEALAAKEAEAAANWDKYLRERADLENYRK 75 (194)
T ss_pred hhHHHHHHhhcccccccCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666665443222 23456688999999999999999998888888887777653
No 248
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=20.07 E-value=98 Score=34.49 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=12.2
Q ss_pred HHHHHHHhHHHHHHHHHHHhHH
Q 010719 361 EISELVKQRDHLEAELKKVNLS 382 (503)
Q Consensus 361 EI~~LekqrdeLEAeLkkVn~s 382 (503)
+|++|+||.++|++|++..+..
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~ 53 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDR 53 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccc
Confidence 5556666666666665544333
No 249
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=20.04 E-value=7.6e+02 Score=26.18 Aligned_cols=28 Identities=21% Similarity=0.439 Sum_probs=11.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHhHHHHHHH
Q 010719 373 EAELKKVNLSLAAAQARLRNAQEEREQF 400 (503)
Q Consensus 373 EAeLkkVn~sL~aA~aRl~~~rEERdqF 400 (503)
.+....+|..+..-..-....++.++-|
T Consensus 75 K~kR~ein~kl~eL~~~~~~l~e~~~~~ 102 (294)
T COG1340 75 KEKRDEINAKLQELRKEYRELKEKRNEF 102 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3333344444444333344444444444
Done!