Query 010719
Match_columns 503
No_of_seqs 29 out of 31
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 12:49:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010719.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010719hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na7_A HP0958; flagellar bioge 95.9 1 3.5E-05 42.6 19.6 147 319-480 65-217 (256)
2 2dfs_A Myosin-5A; myosin-V, in 93.9 1 3.4E-05 51.2 15.9 81 366-446 976-1056(1080)
3 3na7_A HP0958; flagellar bioge 92.1 8.1 0.00028 36.5 17.0 64 359-422 110-173 (256)
4 2eqb_B RAB guanine nucleotide 91.5 0.83 2.9E-05 39.3 8.5 54 357-410 9-74 (97)
5 3oja_B Anopheles plasmodium-re 83.2 14 0.00049 37.4 13.0 24 225-248 453-476 (597)
6 3vkg_A Dynein heavy chain, cyt 82.3 25 0.00084 44.8 16.8 69 306-378 1933-2005(3245)
7 2v71_A Nuclear distribution pr 82.2 34 0.0012 32.3 16.4 43 351-393 40-82 (189)
8 2bnx_A Diaphanous protein homo 80.3 6.6 0.00022 39.4 9.2 56 140-197 92-149 (386)
9 3vkg_A Dynein heavy chain, cyt 78.9 1.2E+02 0.0042 38.9 21.2 64 349-412 2038-2101(3245)
10 1ic2_A Tropomyosin alpha chain 78.2 5.9 0.0002 31.9 6.7 40 357-396 38-77 (81)
11 1i84_S Smooth muscle myosin he 76.3 3.3 0.00011 47.0 6.3 26 130-155 685-715 (1184)
12 2p22_A Suppressor protein STP2 73.3 17 0.0006 33.8 9.3 129 300-442 5-137 (174)
13 3cve_A Homer protein homolog 1 71.9 20 0.00069 29.3 8.2 48 373-420 13-60 (72)
14 2efl_A Formin-binding protein 71.8 61 0.0021 29.8 17.3 54 433-486 193-246 (305)
15 3u1c_A Tropomyosin alpha-1 cha 71.3 40 0.0014 28.3 10.3 37 357-393 41-77 (101)
16 3etv_A Protein transport prote 71.1 16 0.00055 37.5 9.2 61 357-427 13-73 (355)
17 3cvf_A Homer-3, homer protein 70.4 12 0.0004 31.2 6.6 49 372-420 18-66 (79)
18 1i84_S Smooth muscle myosin he 69.1 13 0.00046 42.1 9.0 18 184-201 658-675 (1184)
19 2ocy_A RAB guanine nucleotide 68.7 16 0.00053 33.6 7.8 49 361-409 45-105 (154)
20 3ghg_C Fibrinogen gamma chain; 67.1 25 0.00086 36.6 9.8 98 307-422 38-135 (411)
21 2k48_A Nucleoprotein; viral pr 66.0 20 0.00067 31.5 7.4 58 369-426 37-102 (107)
22 2e7s_A RAB guanine nucleotide 64.4 7.7 0.00026 35.0 4.8 10 400-409 84-93 (135)
23 3oja_B Anopheles plasmodium-re 63.8 35 0.0012 34.5 10.1 55 365-419 528-582 (597)
24 3ghg_A Fibrinogen alpha chain; 63.4 42 0.0015 36.3 10.8 112 285-427 50-163 (562)
25 2dfs_A Myosin-5A; myosin-V, in 62.3 31 0.0011 39.3 10.3 48 351-402 951-998 (1080)
26 4fi5_A Nucleoprotein; structur 59.8 32 0.0011 30.5 7.7 57 369-425 24-88 (113)
27 1jnm_A Proto-oncogene C-JUN; B 59.4 14 0.00049 28.3 4.9 50 325-377 1-53 (62)
28 2ic9_A Nucleocapsid protein; h 58.4 36 0.0012 29.4 7.6 59 369-427 7-73 (96)
29 2ic6_A Nucleocapsid protein; h 57.5 39 0.0013 28.2 7.4 57 369-425 7-71 (78)
30 1gk4_A Vimentin; intermediate 57.1 60 0.0021 26.3 8.5 26 360-385 1-26 (84)
31 2wuj_A Septum site-determining 57.0 7.9 0.00027 29.7 3.1 43 341-383 15-57 (57)
32 3u59_A Tropomyosin beta chain; 56.7 84 0.0029 26.0 11.1 41 358-398 42-82 (101)
33 1l8d_A DNA double-strand break 51.2 99 0.0034 25.2 11.5 38 405-442 63-100 (112)
34 1ci6_A Transcription factor AT 48.5 36 0.0012 26.4 5.6 44 335-378 9-55 (63)
35 1m1j_B Fibrinogen beta chain; 48.4 1.8E+02 0.006 30.7 12.4 59 308-391 101-159 (464)
36 4etp_A Kinesin-like protein KA 48.1 48 0.0017 33.6 8.0 50 357-409 7-56 (403)
37 3q8t_A Beclin-1; autophagy, AT 47.8 67 0.0023 26.9 7.6 32 351-382 16-47 (96)
38 1x8y_A Lamin A/C; structural p 47.5 50 0.0017 27.0 6.6 24 360-383 3-26 (86)
39 1t2k_D Cyclic-AMP-dependent tr 46.3 41 0.0014 25.6 5.6 45 337-381 10-57 (61)
40 4dci_A Uncharacterized protein 44.6 1.3E+02 0.0045 27.4 9.5 61 353-413 29-102 (150)
41 2efr_A General control protein 44.3 1.9E+02 0.0064 26.4 18.3 130 346-491 18-153 (155)
42 2f31_A Diaphanous protein homo 42.7 26 0.0009 32.3 4.7 55 140-196 88-144 (233)
43 1zym_A Enzyme I; phosphotransf 41.1 97 0.0033 29.7 8.5 36 417-452 88-125 (258)
44 1t3j_A Mitofusin 1; coiled coi 40.1 1E+02 0.0035 26.5 7.5 34 348-381 42-75 (96)
45 3oja_A Leucine-rich immune mol 39.7 1.8E+02 0.0063 28.8 10.6 47 351-397 433-479 (487)
46 2js5_A Uncharacterized protein 39.6 29 0.00098 28.5 3.9 28 369-396 5-32 (71)
47 3mq9_A Bone marrow stromal ant 38.8 57 0.0019 32.4 6.7 37 356-392 432-468 (471)
48 2yy0_A C-MYC-binding protein; 38.3 35 0.0012 26.1 4.0 33 351-384 18-50 (53)
49 3q8t_A Beclin-1; autophagy, AT 37.7 1.2E+02 0.004 25.4 7.5 47 356-402 7-53 (96)
50 2nsz_A Programmed cell death p 36.1 1.2E+02 0.0042 25.8 7.6 85 139-229 37-121 (129)
51 2lw1_A ABC transporter ATP-bin 35.9 88 0.003 25.3 6.3 25 361-385 23-47 (89)
52 3tnu_A Keratin, type I cytoske 35.3 2.2E+02 0.0074 24.5 10.3 27 356-382 48-74 (131)
53 3csx_A Putative uncharacterize 34.6 27 0.00093 29.2 3.1 28 369-396 17-44 (81)
54 3pik_A Cation efflux system pr 32.8 3.1E+02 0.011 25.9 10.5 84 352-438 350-433 (446)
55 3d5k_A OPRM, outer membrane pr 32.7 3.5E+02 0.012 26.1 11.2 88 350-440 357-444 (474)
56 1dh3_A Transcription factor CR 32.5 77 0.0026 24.1 5.1 47 327-380 3-49 (55)
57 2ion_A PDCD4, programmed cell 31.7 1.4E+02 0.0047 26.4 7.4 84 139-228 39-122 (152)
58 3hnw_A Uncharacterized protein 30.8 2.8E+02 0.0096 24.5 9.3 36 361-396 76-111 (138)
59 2b5u_A Colicin E3; high resolu 30.0 5.2E+02 0.018 28.0 12.5 97 350-464 329-449 (551)
60 2lw1_A ABC transporter ATP-bin 30.0 1.4E+02 0.0048 24.1 6.6 40 357-396 26-71 (89)
61 2wt7_A Proto-oncogene protein 29.6 1.7E+02 0.0057 22.5 6.6 43 337-379 11-56 (63)
62 1zme_C Proline utilization tra 29.3 34 0.0011 25.5 2.6 22 362-383 46-67 (70)
63 3tnu_B Keratin, type II cytosk 28.4 2.8E+02 0.0095 23.7 10.2 27 356-382 46-72 (129)
64 3tnu_A Keratin, type I cytoske 27.4 2.9E+02 0.01 23.6 8.6 23 358-380 36-58 (131)
65 1wix_A HOOK homolog 1, RSGI RU 26.9 1E+02 0.0036 27.7 5.8 45 156-200 102-160 (164)
66 1gd2_E Transcription factor PA 26.8 55 0.0019 26.4 3.5 28 327-357 10-37 (70)
67 3fpp_A Macrolide-specific effl 26.7 2.6E+02 0.0088 26.2 8.7 27 368-394 70-96 (341)
68 2ocy_A RAB guanine nucleotide 26.7 3.7E+02 0.013 24.6 12.7 51 366-416 78-129 (154)
69 2e7s_A RAB guanine nucleotide 26.6 2.5E+02 0.0085 25.3 8.1 51 366-416 66-117 (135)
70 3aco_A Pacsin2, protein kinase 26.1 4.4E+02 0.015 25.2 21.6 119 356-484 139-263 (350)
71 3qne_A Seryl-tRNA synthetase, 26.0 1.3E+02 0.0045 31.7 7.2 34 357-390 75-108 (485)
72 4ani_A Protein GRPE; chaperone 25.9 3.9E+02 0.013 25.4 9.8 66 357-424 63-128 (213)
73 2pms_C Pneumococcal surface pr 25.7 1.6E+02 0.0053 26.4 6.6 29 353-381 6-34 (125)
74 2yin_A DOCK2, dedicator of cyt 25.5 80 0.0027 32.3 5.4 65 128-200 348-428 (436)
75 3viq_B Mating-type switching p 25.2 54 0.0018 27.6 3.3 27 357-383 5-31 (85)
76 2zqm_A Prefoldin beta subunit 25.0 1.2E+02 0.0042 24.6 5.5 28 358-385 82-109 (117)
77 2wt7_B Transcription factor MA 24.5 1.4E+02 0.0048 25.2 5.8 48 338-389 37-84 (90)
78 3m0d_C TNF receptor-associated 24.5 2.5E+02 0.0085 21.8 7.8 25 396-423 41-65 (65)
79 3haj_A Human pacsin2 F-BAR; pa 24.1 5.8E+02 0.02 25.9 22.9 120 356-485 132-257 (486)
80 2z5i_A TM, general control pro 24.0 1.4E+02 0.0047 22.7 5.1 20 361-380 13-32 (52)
81 2v71_A Nuclear distribution pr 22.9 4.8E+02 0.016 24.5 15.8 97 371-490 46-146 (189)
82 3tnu_B Keratin, type II cytosk 22.8 3.6E+02 0.012 23.0 10.1 24 359-382 35-58 (129)
83 3mq7_A Bone marrow stromal ant 22.8 2.4E+02 0.008 25.3 7.1 29 366-394 70-98 (121)
84 1fxk_A Prefoldin; archaeal pro 22.2 1.1E+02 0.0038 24.5 4.6 37 349-385 68-104 (107)
85 3eg5_B Protein diaphanous homo 22.1 1.1E+02 0.0039 30.5 5.6 56 140-197 154-211 (383)
86 2zqm_A Prefoldin beta subunit 22.1 2.3E+02 0.0077 23.0 6.6 43 349-391 66-108 (117)
87 3ghg_A Fibrinogen alpha chain; 21.9 8E+02 0.027 26.7 14.2 128 351-485 55-195 (562)
88 1gax_A Valrs, valyl-tRNA synth 21.1 1.2E+02 0.004 33.8 6.0 49 357-405 797-849 (862)
89 3u06_A Protein claret segregat 21.0 1.8E+02 0.0062 29.7 6.9 43 357-399 7-49 (412)
90 3mov_A Lamin-B1; LMNB1, B-type 20.8 2.5E+02 0.0084 23.5 6.6 62 362-426 14-85 (95)
91 2eqb_B RAB guanine nucleotide 20.7 4E+02 0.014 22.8 10.6 49 366-414 46-95 (97)
92 2j69_A Bacterial dynamin-like 20.4 8E+02 0.027 26.2 15.5 41 358-398 350-390 (695)
93 3mtu_E Head morphogenesis prot 20.0 39 0.0013 28.1 1.5 17 54-70 37-53 (77)
No 1
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.86 E-value=1 Score=42.59 Aligned_cols=147 Identities=6% Similarity=0.065 Sum_probs=84.5
Q ss_pred hhhchHHHhHhhhhhhhhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHH
Q 010719 319 LSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEERE 398 (503)
Q Consensus 319 LanS~skAEkrI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERd 398 (503)
+-+-+.+...||-..+.|.- -|+...|..++.+ ||..++++...||.++..+...+......+..+.++.+
T Consensus 65 ~e~~i~~~~~ri~~~~~~l~-----~v~~~kE~~aL~k----Eie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~ 135 (256)
T 3na7_A 65 NEQTLQDTNAKIASIQKKMS-----EIKSERELRSLNI----EEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEML 135 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HCSSSSHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----ccCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555544442 2445556655554 66677777777777777777777766666666666666
Q ss_pred HHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhHHHHHHHhhHhhHHHhhhHHHHHHhhhhH------HHhhhHhHHHHHH
Q 010719 399 QFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSE------ELVKHEDYFVNLA 472 (503)
Q Consensus 399 qFdEAnnqIv~hLk~KedELsksi~sc~vEA~vv~tWinFLedtW~lq~~~~e~kekq~~d------eler~~~~f~~l~ 472 (503)
...+.-......+.....++.+.+.....+...+.. -++. .|=..|..++... ++ +=.+|+.||+.|-
T Consensus 136 ~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~---~i~~--~lL~~Yerir~~~-~g~avv~v~~~~C~GC~~~lp 209 (256)
T 3na7_A 136 ELEKLALELESLVENEVKNIKETQQIIFKKKEDLVE---KTEP--KIYSFYERIRRWA-KNTSIVTIKKQACGGCFIRLN 209 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TSCH--HHHHHHHHHHHHH-GGGSEEECBTTBCTTTCCBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCH--HHHHHHHHHHHhC-CCceEEEeeCCccCCCCeeeC
Confidence 555555555555555555555555544444433322 2222 3345788887643 21 1248999999887
Q ss_pred HHHHHHHH
Q 010719 473 ISLLSAYK 480 (503)
Q Consensus 473 ~~~ls~~k 480 (503)
-+.++.-+
T Consensus 210 pq~~~~i~ 217 (256)
T 3na7_A 210 DKIYTEVL 217 (256)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766544
No 2
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.94 E-value=1 Score=51.21 Aligned_cols=81 Identities=14% Similarity=0.140 Sum_probs=64.9
Q ss_pred HHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhHHHHHHHhhHhhHHH
Q 010719 366 VKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVL 445 (503)
Q Consensus 366 ekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~vv~tWinFLedtW~l 445 (503)
++++.+++++++.+...+......+..+..|....++.+.+..+.|+.|...|.+....-+-..+-+..+|--.+..|..
T Consensus 976 ~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~~~~~ 1055 (1080)
T 2dfs_A 976 EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITE 1055 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555566666667777778888888899999999999999999999999999999888888888888888777764
Q ss_pred h
Q 010719 446 Q 446 (503)
Q Consensus 446 q 446 (503)
.
T Consensus 1056 ~ 1056 (1080)
T 2dfs_A 1056 T 1056 (1080)
T ss_dssp H
T ss_pred H
Confidence 3
No 3
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=92.12 E-value=8.1 Score=36.49 Aligned_cols=64 Identities=9% Similarity=0.087 Sum_probs=36.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHH
Q 010719 359 GAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSI 422 (503)
Q Consensus 359 ~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi 422 (503)
-.+|.++..+.++++++++.+...+....+.+...+.+++.--..-+.=+..|..+-++|...|
T Consensus 110 E~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i 173 (256)
T 3na7_A 110 NREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKT 173 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455556666666666666666666666666666655555444444444555555555555543
No 4
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=91.49 E-value=0.83 Score=39.31 Aligned_cols=54 Identities=22% Similarity=0.417 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH------------HHHhhHHHHHH
Q 010719 357 EIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQ------------FDEANDQIVEH 410 (503)
Q Consensus 357 el~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdq------------FdEAnnqIv~h 410 (503)
.+..+|..|+.++...+++++++...|...+++...+..++.+ |+|||+-+..+
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a 74 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADA 74 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667888888888888888888888888888888888877765 88998877665
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.22 E-value=14 Score=37.41 Aligned_cols=24 Identities=13% Similarity=0.325 Sum_probs=14.5
Q ss_pred CcchhhhhhhhHHHHHHHHHhHHh
Q 010719 225 KMNSDIERIDAEASDLKKRLEGMK 248 (503)
Q Consensus 225 K~nAdiariD~Ea~~L~~kl~~~~ 248 (503)
++.+++..++.++..|+.+++...
T Consensus 453 ~l~~e~~~~~~~i~~l~~~~~~~~ 476 (597)
T 3oja_B 453 QLEAEVNELRAEVQQLTNEQIQQE 476 (597)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666665544
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=82.33 E-value=25 Score=44.82 Aligned_cols=69 Identities=17% Similarity=0.237 Sum_probs=39.8
Q ss_pred HHHhhH----HHHHHHHhhhchHHHhHhhhhhhhhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 010719 306 AQKVDK----LKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKK 378 (503)
Q Consensus 306 a~kvdk----LkvlsEsLanS~skAEkrI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkk 378 (503)
++.|++ |.++-.-|.....+||+.+..--.++++|-. |..++.+.|+++..+-.+.++++++-|++|++
T Consensus 1933 ~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~----~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~ 2005 (3245)
T 3vkg_A 1933 EAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEI----KQKDARELQVQLDVRNKEIAVQKVKAYADLEK 2005 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345554 4445556777788888877766666666543 22355556666665555566666655544444
No 7
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=82.24 E-value=34 Score=32.26 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=30.3
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHh
Q 010719 351 SSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNA 393 (503)
Q Consensus 351 v~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~ 393 (503)
-.+.|.|+-.||..++|+-.+|...+.++..-+.....++...
T Consensus 40 SrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~ 82 (189)
T 2v71_A 40 SRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQ 82 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888888887777777777776666666555443
No 8
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=80.25 E-value=6.6 Score=39.38 Aligned_cols=56 Identities=7% Similarity=0.234 Sum_probs=41.8
Q ss_pred hhhhhhhhhhhhHHHHHHhccCCChhHHHHHHHHHH-hhhcCcHH-HHHHHHHhHHHHHH
Q 010719 140 FRDVFLQSQALEAITVSMILEAPNEEEISLLLEMFG-LCLTGGKE-VHHAITSSIQDLAT 197 (503)
Q Consensus 140 FrdVFL~SqALE~I~lSmileaP~eeEvsLLlEiFg-lcL~GGke-Vh~aivssiqdLA~ 197 (503)
+..|+-+.+++-.|+.| +.+|+..=..+.+|+++ +|+.+|.+ +|..+++++...+.
T Consensus 92 l~~vl~~~~~i~~l~~s--L~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~ 149 (386)
T 2bnx_A 92 IKTMLETEEGILLLVRA--MDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 149 (386)
T ss_dssp HHHHHHSSSHHHHHHHT--CCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHH--hCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence 44566666777666665 57888888888999876 89986533 79999999987643
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=78.92 E-value=1.2e+02 Score=38.87 Aligned_cols=64 Identities=16% Similarity=0.294 Sum_probs=51.5
Q ss_pred ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhh
Q 010719 349 NESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLK 412 (503)
Q Consensus 349 ~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk 412 (503)
.++.+.-.++.++.+.+-++++.|+++...++.+|..|..=+...-.|+.-..+...++-..++
T Consensus 2038 ~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~ 2101 (3245)
T 3vkg_A 2038 TALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMS 2101 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHH
Confidence 4455555567777788888899999999999999999999999999999999888777644443
No 10
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=78.21 E-value=5.9 Score=31.92 Aligned_cols=40 Identities=33% Similarity=0.365 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHH
Q 010719 357 EIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEE 396 (503)
Q Consensus 357 el~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEE 396 (503)
....||..|.++.-.||.+|-+++..|..|...|..++..
T Consensus 38 ~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~ 77 (81)
T 1ic2_A 38 QLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKK 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999988776543
No 11
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=76.32 E-value=3.3 Score=46.97 Aligned_cols=26 Identities=12% Similarity=0.125 Sum_probs=13.0
Q ss_pred ecCCCCCCcchhhhhh-----hhhhhhHHHH
Q 010719 130 DADFGGEPLNFRDVFL-----QSQALEAITV 155 (503)
Q Consensus 130 D~d~gGePmnFrdVFL-----~SqALE~I~l 155 (503)
=|.....|..|-.... |++-||+|-+
T Consensus 685 kPN~~k~p~~fd~~~V~~QLr~~GvlE~iri 715 (1184)
T 1i84_S 685 IPNHEKRAGKLDAHLVLEQLRCNGVLEGIRI 715 (1184)
T ss_dssp CCCSSCCSSCCCHHHHHHHHHHTTHHHHHHH
T ss_pred CCCCcCCCCcccHHHHHHHHhhcCchHHHHh
Confidence 3444555666644443 3335666644
No 12
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=73.29 E-value=17 Score=33.78 Aligned_cols=129 Identities=15% Similarity=0.178 Sum_probs=80.9
Q ss_pred CChhhHHHHhhHHHHHHHHhhhchHHHhH-hhhhhhhhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 010719 300 DSPEVHAQKVDKLKVLSESLSNSSVKAEK-RISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKK 378 (503)
Q Consensus 300 dspe~ha~kvdkLkvlsEsLanS~skAEk-rI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkk 378 (503)
=||..|-+.+++|+-+-..|..-...-.+ .|..+-.+.+.++.=| ..+++.....+..++..|++++..|+.++..
T Consensus 5 ~~~~~~~~~l~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~---~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~ 81 (174)
T 2p22_A 5 ISPTNHHEMLQNLQTVVNELYREDVDYVADKILTRQTVMQESIARF---HEIIAIDKNHLRAVEQAIEQTMHSLNAQIDV 81 (174)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999998866666554443222 3444555555665533 3456666777888888888888888887776
Q ss_pred HhHHHHHHHHHHHHhHHHHHHHHHhhH---HHHHHhhhchhHHHHHHhhhhhhhhHHHHHHHhhHhh
Q 010719 379 VNLSLAAAQARLRNAQEEREQFDEAND---QIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDS 442 (503)
Q Consensus 379 Vn~sL~aA~aRl~~~rEERdqFdEAnn---qIv~hLk~KedELsksi~sc~vEA~vv~tWinFLedt 442 (503)
+..... + =.+|...|+ --++.+-.-.+.+.+.+=.|-+|=..+.-+|.+|..-
T Consensus 82 l~~~~~-------k----~~e~~~~~~~~~~diD~~v~~~~~l~~Qll~l~Aed~AieDaIy~L~~a 137 (174)
T 2p22_A 82 LTANRA-------K----VQQFSSTSHVDDEDVNSIAVAKTDGLNQLYNLVAQDYALTDTIECLSRM 137 (174)
T ss_dssp HHHHHH-------H----HHHHTTSSCCCSSCGGGTEECSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-------H----HHHHHhcCCCCCCChhhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665211 1 123332221 0123333334556788888999999999999998765
No 13
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=71.88 E-value=20 Score=29.31 Aligned_cols=48 Identities=27% Similarity=0.326 Sum_probs=35.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHH
Q 010719 373 EAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLK 420 (503)
Q Consensus 373 EAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsk 420 (503)
|.+=..++-.+.....++...+.+|+++...-.+++.-|-.|-+||.-
T Consensus 13 E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~e 60 (72)
T 3cve_A 13 EIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTE 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 333333334444555667788899999999999999999999999864
No 14
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=71.84 E-value=61 Score=29.76 Aligned_cols=54 Identities=7% Similarity=-0.007 Sum_probs=35.1
Q ss_pred HHHHHhhHhhHHHhhhHHHHHHhhhhHHHhhhHhHHHHHHHHHHHHHHHhhchh
Q 010719 433 STWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPS 486 (503)
Q Consensus 433 ~tWinFLedtW~lq~~~~e~kekq~~deler~~~~f~~l~~~~ls~~ke~l~~~ 486 (503)
+.+...|..+=..|..|-+..-.++.+.|+.+...++..++..|..|.......
T Consensus 193 ~~Y~~~v~~~n~~~~~~~~~~~~~~~~~lQ~le~~r~~~lk~~l~~~~~~~~~~ 246 (305)
T 2efl_A 193 ADYSSILQKFNHEQHEYYHTHIPNIFQKIQEMEERRIVRMGESMKTYAEVDRQV 246 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555666655655555666667778777777777777777777776654433
No 15
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=71.34 E-value=40 Score=28.26 Aligned_cols=37 Identities=24% Similarity=0.185 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHh
Q 010719 357 EIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNA 393 (503)
Q Consensus 357 el~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~ 393 (503)
.+..||..|.++...||.+|-+++..|..|...|..+
T Consensus 41 ~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ 77 (101)
T 3u1c_A 41 QLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888888888888888887777655
No 16
>3etv_A Protein transport protein TIP20,linker,protein transport protein DSL1; TIP20P-DSL1P complex, endoplasmic reticulum, ER-golgi transport; 1.94A {Saccharomyces cerevisiae} PDB: 3etu_A
Probab=71.07 E-value=16 Score=37.50 Aligned_cols=61 Identities=18% Similarity=0.261 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhh
Q 010719 357 EIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRV 427 (503)
Q Consensus 357 el~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~v 427 (503)
++...|.+.++|||+|--+|+.++... |.+|-----++-++|++ |..++.+|++.+...+.
T Consensus 13 ~id~~I~~i~~eRd~La~~lq~~~~~~--~~~~~~~~~~~~~d~e~--------llkre~~Lt~EL~~l~~ 73 (355)
T 3etv_A 13 NINDRIKQVQNERNELASKLQNLKQSL--ASNDTGGGSGGGSDSSD--------LLQREAILANELNILDN 73 (355)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHC-------------------------------CTTHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccc--ccccccCCCcchhhHHH--------HHHHHHHHHHHHHHHHh
Confidence 467889999999999999999988776 33333333344455554 88899999999977654
No 17
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=70.38 E-value=12 Score=31.15 Aligned_cols=49 Identities=24% Similarity=0.246 Sum_probs=36.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHH
Q 010719 372 LEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLK 420 (503)
Q Consensus 372 LEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsk 420 (503)
+|.+=..++-.+.....++...+++|+++...-.++..-|-.|-+||+-
T Consensus 18 ~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~e 66 (79)
T 3cvf_A 18 LETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSE 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3333333444455556667788899999999999999999999999864
No 18
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=69.14 E-value=13 Score=42.13 Aligned_cols=18 Identities=17% Similarity=0.277 Sum_probs=11.4
Q ss_pred HHHHHHHhHHHHHHHhcc
Q 010719 184 VHHAITSSIQDLATAISK 201 (503)
Q Consensus 184 Vh~aivssiqdLA~afs~ 201 (503)
|-..+-.|+.+|-+...+
T Consensus 658 v~~~f~~~l~~L~~~l~~ 675 (1184)
T 1i84_S 658 VGQLYKEQLTKLMTTLRN 675 (1184)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 555666677776666554
No 19
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=68.71 E-value=16 Score=33.60 Aligned_cols=49 Identities=24% Similarity=0.441 Sum_probs=25.7
Q ss_pred HHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH------------HHHhhHHHHH
Q 010719 361 EISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQ------------FDEANDQIVE 409 (503)
Q Consensus 361 EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdq------------FdEAnnqIv~ 409 (503)
++..|+.++...+++++++...|+..+++...+..++.+ |+|||+-+..
T Consensus 45 ~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ 105 (154)
T 2ocy_A 45 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVAD 105 (154)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555555544444444433 7777776654
No 20
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=67.09 E-value=25 Score=36.56 Aligned_cols=98 Identities=11% Similarity=0.115 Sum_probs=63.3
Q ss_pred HHhhHHHHHHHHhhhchHHHhHhhhhhhhhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHH
Q 010719 307 QKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAA 386 (503)
Q Consensus 307 ~kvdkLkvlsEsLanS~skAEkrI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA 386 (503)
.-|+.|+..-+.++|+|+.|+..|..-..--..+++-+-...+-+.+.=|....|+..+|......+.++..+...++..
T Consensus 38 ~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~ 117 (411)
T 3ghg_C 38 KDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSN 117 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 35778999999999999999999876544333333333333344555556677888888777766666666555544333
Q ss_pred HHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHH
Q 010719 387 QARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSI 422 (503)
Q Consensus 387 ~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi 422 (503)
++-|..|+.+...|....
T Consensus 118 ------------------~~~i~~L~~~v~~l~~~~ 135 (411)
T 3ghg_C 118 ------------------NQKIVNLKEKVAQLEAQC 135 (411)
T ss_dssp ------------------HHHHHHHHHHHHHHHTTS
T ss_pred ------------------HHHHHHHHHHHHHHHHHh
Confidence 344566666666665543
No 21
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=65.98 E-value=20 Score=31.49 Aligned_cols=58 Identities=24% Similarity=0.314 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH-HHh-------hHHHHHHhhhchhHHHHHHhhhh
Q 010719 369 RDHLEAELKKVNLSLAAAQARLRNAQEEREQF-DEA-------NDQIVEHLKTKEDELLKSIAACR 426 (503)
Q Consensus 369 rdeLEAeLkkVn~sL~aA~aRl~~~rEERdqF-dEA-------nnqIv~hLk~KedELsksi~sc~ 426 (503)
..+|++|++..+.+|..|+-+|+.+.+-=++= |+- -...|.+|+.|-.||-+-++.--
T Consensus 37 ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 37 LQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788899999999999999998877532221 233 34568899999999999887543
No 22
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=64.37 E-value=7.7 Score=35.04 Aligned_cols=10 Identities=50% Similarity=0.933 Sum_probs=6.1
Q ss_pred HHHhhHHHHH
Q 010719 400 FDEANDQIVE 409 (503)
Q Consensus 400 FdEAnnqIv~ 409 (503)
|+|||+-+..
T Consensus 84 FeEAN~MVa~ 93 (135)
T 2e7s_A 84 FDEANNLVAD 93 (135)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665544
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=63.82 E-value=35 Score=34.53 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=20.5
Q ss_pred HHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHH
Q 010719 365 LVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELL 419 (503)
Q Consensus 365 LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELs 419 (503)
++++.+++.+++++++.+...-..++...++...+.-+-++.+..-+|..++++.
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 528 RRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333333333333333333333333333333333333333334444444444443
No 24
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=63.39 E-value=42 Score=36.29 Aligned_cols=112 Identities=18% Similarity=0.226 Sum_probs=76.2
Q ss_pred hhhhhhhh-hhhccCCCChhhHHHHhhHHHHHHHHhhhchHHHhHhhhhhhhhhHHhhhhhhhccccchHHHHHHHHHHH
Q 010719 285 RLEGLLLK-KKLLSYGDSPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEIS 363 (503)
Q Consensus 285 ~lE~lllk-kk~~~~Gdspe~ha~kvdkLkvlsEsLanS~skAEkrI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~ 363 (503)
+|-++|+| .+.+. ..|++||..-+.+..+..+++.-+ .++-+.|.=|....++. .....||+
T Consensus 50 rLQglLdkqErDlt---------krINELKnqLEdlsKnsKdseqy~----k~~~E~Lr~rq~q~~dN----dNtynE~S 112 (562)
T 3ghg_A 50 RMKGLIDEVNQDFT---------NRINKLKNSLFEYQKNNKDSHSLT----TNIMEILRGDFSSANNR----DNTYNRVS 112 (562)
T ss_dssp HHHHHHHHHHHHHH---------HHHHHHHHHHTHHHHHHHHHHHHH----HHHHHTTSSHHHHHHHH----HHHHHHTT
T ss_pred chhhhHHhhcCcHH---------HHHHHHHHHHHHHHhhchhHHHHH----HHHHHHHHHHHHhhhcc----chhHHHHH
Confidence 56677776 44444 689999999999999999999876 44555555444444422 23667777
Q ss_pred -HHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhh
Q 010719 364 -ELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRV 427 (503)
Q Consensus 364 -~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~v 427 (503)
+|+++...|+.++.-+-..|.+-+..|.+.+ .-+|.=|-+.+--|++|+-
T Consensus 113 ~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~--------------~kIQRLEvDIdiqirsCKg 163 (562)
T 3ghg_A 113 EDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQL--------------VDMKRLEVDIDIKIRSCRG 163 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhccc
Confidence 8888888888877665555555555555443 3345557778888899984
No 25
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=62.32 E-value=31 Score=39.33 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=26.2
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHH
Q 010719 351 SSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDE 402 (503)
Q Consensus 351 v~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdE 402 (503)
+...++.+..|++.|+++.++|+...+..+ ++.++.++.++|=+..++
T Consensus 951 ~~~~~~~~~~e~~~L~~~l~~le~~~~e~~----~~~~~v~~L~~e~~~l~~ 998 (1080)
T 2dfs_A 951 MNNLEITYSTETEKLRSDVERLRMSEEEAK----NATNRVLSLQEEIAKLRK 998 (1080)
T ss_dssp CHHHHHHHHHHHHHHHHTHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777766544433 333444444444443333
No 26
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=59.78 E-value=32 Score=30.46 Aligned_cols=57 Identities=25% Similarity=0.377 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH-HHHh-------hHHHHHHhhhchhHHHHHHhhh
Q 010719 369 RDHLEAELKKVNLSLAAAQARLRNAQEEREQ-FDEA-------NDQIVEHLKTKEDELLKSIAAC 425 (503)
Q Consensus 369 rdeLEAeLkkVn~sL~aA~aRl~~~rEERdq-FdEA-------nnqIv~hLk~KedELsksi~sc 425 (503)
..+|++|+...+.+|..|+-+|+.+.+-=++ =|+- -...|.+|+.|-.||-+.++.-
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~ 88 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADR 88 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999887653221 1233 3456889999999999988764
No 27
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=59.35 E-value=14 Score=28.33 Aligned_cols=50 Identities=26% Similarity=0.288 Sum_probs=29.7
Q ss_pred HHhHhhhhhhhhhHHhhhhhhhccccchHHHHH---HHHHHHHHHHhHHHHHHHHH
Q 010719 325 KAEKRISDHRSQKEEALKVRVVKANESSEKEKE---IGAEISELVKQRDHLEAELK 377 (503)
Q Consensus 325 kAEkrI~d~R~QKEeAl~fRv~K~~Ev~~~Eke---l~~EI~~LekqrdeLEAeLk 377 (503)
|.|.|..-| ++-|..+|-+|-..+..+|.+ |..|-..|..+...|+.|+.
T Consensus 1 K~errr~rN---r~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 1 KAERKRMRN---RIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp CHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555554 467899999998888777753 23344444444444444443
No 28
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=58.35 E-value=36 Score=29.37 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH-HH-------hhHHHHHHhhhchhHHHHHHhhhhh
Q 010719 369 RDHLEAELKKVNLSLAAAQARLRNAQEEREQF-DE-------ANDQIVEHLKTKEDELLKSIAACRV 427 (503)
Q Consensus 369 rdeLEAeLkkVn~sL~aA~aRl~~~rEERdqF-dE-------AnnqIv~hLk~KedELsksi~sc~v 427 (503)
..+|+.|++..+.+|..|+-+|+.+.+-=++= |+ +-...|.+|+.|-.||-+.++.--.
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35788999999999999999998877532221 23 3345788999999999998876433
No 29
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=57.51 E-value=39 Score=28.16 Aligned_cols=57 Identities=23% Similarity=0.308 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH-HHHhh-------HHHHHHhhhchhHHHHHHhhh
Q 010719 369 RDHLEAELKKVNLSLAAAQARLRNAQEEREQ-FDEAN-------DQIVEHLKTKEDELLKSIAAC 425 (503)
Q Consensus 369 rdeLEAeLkkVn~sL~aA~aRl~~~rEERdq-FdEAn-------nqIv~hLk~KedELsksi~sc 425 (503)
..+|+.+++..+.+|..|+-+|+.+.+-=++ =|+-| ...|.+|+.|-.||-+-++.-
T Consensus 7 l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~ 71 (78)
T 2ic6_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADL 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999887653221 13333 456889999999999888754
No 30
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=57.12 E-value=60 Score=26.26 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=18.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHHHH
Q 010719 360 AEISELVKQRDHLEAELKKVNLSLAA 385 (503)
Q Consensus 360 ~EI~~LekqrdeLEAeLkkVn~sL~a 385 (503)
+||+.|..+++.||+.|..++.....
T Consensus 1 ~el~~l~~~~~sLE~~l~e~e~~~~~ 26 (84)
T 1gk4_A 1 CEVDALKGTNESLERQMREMEENFAV 26 (84)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788888888888887777665443
No 31
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=56.97 E-value=7.9 Score=29.66 Aligned_cols=43 Identities=14% Similarity=0.268 Sum_probs=35.8
Q ss_pred hhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHH
Q 010719 341 LKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSL 383 (503)
Q Consensus 341 l~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL 383 (503)
..||+-...||.+---+|..++..|.++..+|+.+++..+.+|
T Consensus 15 ~~~rGY~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 15 KSFRGYDEDEVNEFLAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp EETTEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4688999999999999999999999999999999999887653
No 32
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=56.71 E-value=84 Score=26.04 Aligned_cols=41 Identities=27% Similarity=0.313 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHH
Q 010719 358 IGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEERE 398 (503)
Q Consensus 358 l~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERd 398 (503)
+..||..|.++.-.|+.++-+++..|..+...|..+..-+.
T Consensus 42 ~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~ 82 (101)
T 3u59_A 42 LEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKAT 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56688888888888888888888888888877766644443
No 33
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=51.17 E-value=99 Score=25.22 Aligned_cols=38 Identities=5% Similarity=0.067 Sum_probs=22.3
Q ss_pred HHHHHHhhhchhHHHHHHhhhhhhhhHHHHHHHhhHhh
Q 010719 405 DQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDS 442 (503)
Q Consensus 405 nqIv~hLk~KedELsksi~sc~vEA~vv~tWinFLedt 442 (503)
..++.....+-.++...|..-+.+...+.+.+..|+..
T Consensus 63 ~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~ 100 (112)
T 1l8d_A 63 EELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDME 100 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666555443
No 34
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=48.47 E-value=36 Score=26.44 Aligned_cols=44 Identities=23% Similarity=0.254 Sum_probs=26.4
Q ss_pred hhhHHhhhhhhhccccchHHHH---HHHHHHHHHHHhHHHHHHHHHH
Q 010719 335 SQKEEALKVRVVKANESSEKEK---EIGAEISELVKQRDHLEAELKK 378 (503)
Q Consensus 335 ~QKEeAl~fRv~K~~Ev~~~Ek---el~~EI~~LekqrdeLEAeLkk 378 (503)
+-+.-|..||.+|-.+...+|. +|..+...|+.+.+.|+.|+..
T Consensus 9 rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~ 55 (63)
T 1ci6_A 9 QNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQY 55 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999887766654 3344444444444444444433
No 35
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=48.42 E-value=1.8e+02 Score=30.75 Aligned_cols=59 Identities=17% Similarity=0.184 Sum_probs=35.3
Q ss_pred HhhHHHHHHHHhhhchHHHhHhhhhhhhhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHH
Q 010719 308 KVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQ 387 (503)
Q Consensus 308 kvdkLkvlsEsLanS~skAEkrI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~ 387 (503)
.++-|+-.-++|+|+++.+...| +.|...+...++|+-+++..+++.+..|..-.
T Consensus 101 ~LqeLe~~l~~lsn~Ts~~~~~i-------------------------~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~ 155 (464)
T 1m1j_B 101 VLRDLKDRVAKFSDTSTTMYQYV-------------------------NMIDNKLVKTQKQRKDNDIILSEYNTEMELHY 155 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHH-------------------------HHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 45667776777777766555443 35556666666666666666666666555544
Q ss_pred HHHH
Q 010719 388 ARLR 391 (503)
Q Consensus 388 aRl~ 391 (503)
+.++
T Consensus 156 ~~i~ 159 (464)
T 1m1j_B 156 NYIK 159 (464)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 36
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=48.15 E-value=48 Score=33.62 Aligned_cols=50 Identities=16% Similarity=0.311 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHH
Q 010719 357 EIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVE 409 (503)
Q Consensus 357 el~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~ 409 (503)
++..||..|+.++.+|+.++++.+..+.....++.....+|.+. +|+|.+
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l---~n~~~e 56 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTL---HNELQE 56 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 56778888888888888888888888888888888777777665 555554
No 37
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=47.78 E-value=67 Score=26.85 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=21.0
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHHHhHH
Q 010719 351 SSEKEKEIGAEISELVKQRDHLEAELKKVNLS 382 (503)
Q Consensus 351 v~~~Ekel~~EI~~LekqrdeLEAeLkkVn~s 382 (503)
+..-|.++..|+..|++.++.|.++|+.+...
T Consensus 16 l~~eE~~L~~eL~~lEke~~~l~~el~~le~E 47 (96)
T 3q8t_A 16 LALEEERLIQELEDVEKNRKVVAENLEKVQAE 47 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45556667777777777777777766665543
No 38
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=47.52 E-value=50 Score=26.97 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=8.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHH
Q 010719 360 AEISELVKQRDHLEAELKKVNLSL 383 (503)
Q Consensus 360 ~EI~~LekqrdeLEAeLkkVn~sL 383 (503)
+||..|..|+..||+.|..++...
T Consensus 3 ~eie~L~~q~~~Le~~l~e~E~~~ 26 (86)
T 1x8y_A 3 CQLSQLQCQLAAKEAKLRDLEDSL 26 (86)
T ss_dssp ---------CTTHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666665555443
No 39
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=46.33 E-value=41 Score=25.57 Aligned_cols=45 Identities=16% Similarity=0.151 Sum_probs=30.5
Q ss_pred hHHhhhhhhhccccchHHHHH---HHHHHHHHHHhHHHHHHHHHHHhH
Q 010719 337 KEEALKVRVVKANESSEKEKE---IGAEISELVKQRDHLEAELKKVNL 381 (503)
Q Consensus 337 KEeAl~fRv~K~~Ev~~~Eke---l~~EI~~LekqrdeLEAeLkkVn~ 381 (503)
+.-|..+|.+|-..+..+|.+ +..|...|..+...|+.|+..+..
T Consensus 10 r~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 10 RAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999998877777654 455666666666666666655443
No 40
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=44.62 E-value=1.3e+02 Score=27.37 Aligned_cols=61 Identities=21% Similarity=0.274 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHH---------HH----HHHHHhHHHHHHHHHhhHHHHHHhhh
Q 010719 353 EKEKEIGAEISELVKQRDHLEAELKKVNLSLAA---------AQ----ARLRNAQEEREQFDEANDQIVEHLKT 413 (503)
Q Consensus 353 ~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~a---------A~----aRl~~~rEERdqFdEAnnqIv~hLk~ 413 (503)
.+.+++.+-|..++.+..+||-|++++-..... +. .-......||..+.|.-+++.+.|+.
T Consensus 29 ~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~q 102 (150)
T 4dci_A 29 EAEREISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQ 102 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777788888888888888776433322 11 11245677999999999999988763
No 41
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=44.28 E-value=1.9e+02 Score=26.41 Aligned_cols=130 Identities=24% Similarity=0.269 Sum_probs=79.5
Q ss_pred hccccchHHHHHHHHHHH---HHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhch---hHHH
Q 010719 346 VKANESSEKEKEIGAEIS---ELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKE---DELL 419 (503)
Q Consensus 346 ~K~~Ev~~~Ekel~~EI~---~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~Ke---dELs 419 (503)
+|..||+.+|.+|..-.. ..+.+.-+||.+|+-|...|.+-.++-..+.+--+.|++--...-..||.-+ +.-.
T Consensus 18 ~KyeEvaR~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AE 97 (155)
T 2efr_A 18 HLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAE 97 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666653322 3345667899999999999988888877777777888877666655555322 2333
Q ss_pred HHHhhhhhhhhHHHHHHHhhHhhHHHhhhHHHHHHhhhhHHHhhhHhHHHHHHHHHHHHHHHhhchhhHHHH
Q 010719 420 KSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPSISRIG 491 (503)
Q Consensus 420 ksi~sc~vEA~vv~tWinFLedtW~lq~~~~e~kekq~~deler~~~~f~~l~~~~ls~~ke~l~~~i~~i~ 491 (503)
|++. .+..=|.=|||.+.- ...|-+.+.+||+. -|..|....-..| .|..-|.|++
T Consensus 98 Rsv~-------kLEk~id~lEd~L~~----~Kek~~~i~~eLd~---tl~el~~~~~~~~--~~~~~~~~~~ 153 (155)
T 2efr_A 98 RSVT-------KLEKSIDDLEDELYA----QKLKYKAISEEMKQ---LEDKVEELLSKNY--HLENEVARLK 153 (155)
T ss_dssp HHHH-------HHHHHHHHHHHHHHH----HHHHHHHHHHHHHH---HHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHH-------HHHHHHHHHHHHHHH----HHHHHHHHHHHHHH---HHHHHHhcccchH--HHHHHHHHhh
Confidence 3333 445557778888764 36677788899984 3444433222222 3444555554
No 42
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=42.71 E-value=26 Score=32.31 Aligned_cols=55 Identities=7% Similarity=0.212 Sum_probs=43.2
Q ss_pred hhhhhhhhhhhhHHHHHHhccCCChhHHHHHHHHHH-hhhcCcHHH-HHHHHHhHHHHH
Q 010719 140 FRDVFLQSQALEAITVSMILEAPNEEEISLLLEMFG-LCLTGGKEV-HHAITSSIQDLA 196 (503)
Q Consensus 140 FrdVFL~SqALE~I~lSmileaP~eeEvsLLlEiFg-lcL~GGkeV-h~aivssiqdLA 196 (503)
+..|+-+.+++..|+.| +.+|+..-+.+.+|+++ +|+.+|.+- |..+++++....
T Consensus 88 ~~~vl~~~~~i~~l~~~--L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~ 144 (233)
T 2f31_A 88 IKTMLETEEGILLLVRA--MDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERA 144 (233)
T ss_dssp HHHHHTSSSHHHHHHTT--CCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHH--hCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Confidence 45566667777666666 57889999999999987 899876555 999999998764
No 43
>1zym_A Enzyme I; phosphotransferase; 2.50A {Escherichia coli} SCOP: a.60.10.1 c.8.1.2 PDB: 1eza_A 1ezb_A 1ezc_A 1ezd_A 2eza_A 2ezb_A 2ezc_A 3ezb_A 3eze_A 3eza_A
Probab=41.10 E-value=97 Score=29.66 Aligned_cols=36 Identities=8% Similarity=-0.034 Sum_probs=20.3
Q ss_pred HHHHHHhh--hhhhhhHHHHHHHhhHhhHHHhhhHHHH
Q 010719 417 ELLKSIAA--CRVESDVLSTWINFLEDSWVLQCSQMEL 452 (503)
Q Consensus 417 ELsksi~s--c~vEA~vv~tWinFLedtW~lq~~~~e~ 452 (503)
+....|.. |++|..+-.+--.|.+--+.+...|...
T Consensus 88 ~v~~~I~~~~~~Ae~A~~~~~~~~~~~f~~~~d~Ylre 125 (258)
T 1zym_A 88 EIIALIKDKHMTADAAAHEVIEGQASALEELDDEYLKE 125 (258)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHTTTSSSCCHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCCCHHHHh
Confidence 34555553 6677666666556655555555555443
No 44
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=40.12 E-value=1e+02 Score=26.45 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=27.5
Q ss_pred cccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhH
Q 010719 348 ANESSEKEKEIGAEISELVKQRDHLEAELKKVNL 381 (503)
Q Consensus 348 ~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~ 381 (503)
-+.|.++..++..||.+|+++.+.||.-..+...
T Consensus 42 c~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~ 75 (96)
T 1t3j_A 42 CQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKL 75 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4678899999999999999999998875544433
No 45
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=39.74 E-value=1.8e+02 Score=28.83 Aligned_cols=47 Identities=17% Similarity=0.166 Sum_probs=38.9
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 010719 351 SSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEER 397 (503)
Q Consensus 351 v~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEER 397 (503)
+...++....||..|.++++.|+.++-++...+..|.++++++..-.
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVRE 479 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHH
Confidence 45556777888999999999999999999999999999998886543
No 46
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=39.62 E-value=29 Score=28.46 Aligned_cols=28 Identities=32% Similarity=0.466 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHH
Q 010719 369 RDHLEAELKKVNLSLAAAQARLRNAQEE 396 (503)
Q Consensus 369 rdeLEAeLkkVn~sL~aA~aRl~~~rEE 396 (503)
.++|.+++||+|+...++.+.|++.-|+
T Consensus 5 i~eLkkevkKL~~~A~q~kmdLHDLaEd 32 (71)
T 2js5_A 5 AEELKAKLKKLNAQATALKMDLHDLAED 32 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhcc
Confidence 4689999999999999999999998875
No 47
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=38.77 E-value=57 Score=32.37 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHH
Q 010719 356 KEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRN 392 (503)
Q Consensus 356 kel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~ 392 (503)
.-|-.+.+.-+|+..|||+|.++.|.+|..++|..+.
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 432 ASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555678888888888888888777776554
No 48
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=38.28 E-value=35 Score=26.09 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=22.2
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHH
Q 010719 351 SSEKEKEIGAEISELVKQRDHLEAELKKVNLSLA 384 (503)
Q Consensus 351 v~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~ 384 (503)
.+.+|+ |..|.++|..+.++|.++++....+|+
T Consensus 18 ~~d~ea-Lk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 18 NPEIEL-LRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344443 677777777777777777777776654
No 49
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=37.68 E-value=1.2e+02 Score=25.35 Aligned_cols=47 Identities=26% Similarity=0.408 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHH
Q 010719 356 KEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDE 402 (503)
Q Consensus 356 kel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdE 402 (503)
..+..|+..|...-..|..+|+.+...=.....-+...+.|-.++|.
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~ 53 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQ 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 45677788888888888888888777655555555555555555443
No 50
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=36.14 E-value=1.2e+02 Score=25.77 Aligned_cols=85 Identities=12% Similarity=0.214 Sum_probs=48.3
Q ss_pred chhhhhhhhhhhhHHHHHHhccCCChhHHHHHHHHHHhhhcCcHHHHHHHHHhHHHHHHHhccchhhhccChHHHHHHHH
Q 010719 139 NFRDVFLQSQALEAITVSMILEAPNEEEISLLLEMFGLCLTGGKEVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQ 218 (503)
Q Consensus 139 nFrdVFL~SqALE~I~lSmileaP~eeEvsLLlEiFglcL~GGkeVh~aivssiqdLA~afs~y~DEvLvkReELlq~aq 218 (503)
.|++.|.+ ..++|.+|..++.++.++..++.-++.+|-==.+.+..+++.+........=.|+--.+-|-+|..
T Consensus 37 ~f~~e~V~------~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v~~~l~Dl~lDiP~a~~~l~~~v~ 110 (129)
T 2nsz_A 37 HFHHELVY------EAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVE 110 (129)
T ss_dssp GGHHHHHH------HHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHH
T ss_pred ccHHHHHH------HHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHhhChHhhcCccchHHHHHHHHH
Confidence 67777766 455677798887787888888876665542222233333333222222222234555667777877
Q ss_pred HhhhccCcchh
Q 010719 219 TAITGLKMNSD 229 (503)
Q Consensus 219 ~AisGLK~nAd 229 (503)
.||..-=++..
T Consensus 111 ~ai~~g~l~~~ 121 (129)
T 2nsz_A 111 ECFQAGIISKQ 121 (129)
T ss_dssp HHHHTTCSCHH
T ss_pred HHHHCCCCCHH
Confidence 77765544443
No 51
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=35.87 E-value=88 Score=25.31 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=14.7
Q ss_pred HHHHHHHhHHHHHHHHHHHhHHHHH
Q 010719 361 EISELVKQRDHLEAELKKVNLSLAA 385 (503)
Q Consensus 361 EI~~LekqrdeLEAeLkkVn~sL~a 385 (503)
|+..|+.+.+.||++++.++..|+.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4555666666666666666655543
No 52
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=35.25 E-value=2.2e+02 Score=24.50 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhHH
Q 010719 356 KEIGAEISELVKQRDHLEAELKKVNLS 382 (503)
Q Consensus 356 kel~~EI~~LekqrdeLEAeLkkVn~s 382 (503)
-.|..||+.|..+++.||+.|..++..
T Consensus 48 q~L~~el~~l~~~~~sLE~~l~e~e~~ 74 (131)
T 3tnu_A 48 QNLEIELQSQLSMKASLENSLEETKGR 74 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 355667777777777777777666554
No 53
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=34.56 E-value=27 Score=29.24 Aligned_cols=28 Identities=18% Similarity=0.270 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHH
Q 010719 369 RDHLEAELKKVNLSLAAAQARLRNAQEE 396 (503)
Q Consensus 369 rdeLEAeLkkVn~sL~aA~aRl~~~rEE 396 (503)
.++|.+++||+|+...++.+.||+.-|+
T Consensus 17 i~eLkkevkKL~~~A~q~kmdLHDLaEd 44 (81)
T 3csx_A 17 VADLKKKVRKLNSKAGQMKMDLHDLAEG 44 (81)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4678999999999999999999998886
No 54
>3pik_A Cation efflux system protein CUSC; beta-barrel, lipoprotein, outer membrane; HET: UNL; 2.30A {Escherichia coli}
Probab=32.76 E-value=3.1e+02 Score=25.92 Aligned_cols=84 Identities=14% Similarity=0.162 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhH
Q 010719 352 SEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDV 431 (503)
Q Consensus 352 ~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~v 431 (503)
...+..+..|+...-.+......+++-....+..|...+. -.+.+|+.+..-+++-|.++.+-+.....--.+..+.
T Consensus 350 ~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~y~~G~~s~~dll~a~~~l~~a~~~~~~a~~~~ 426 (446)
T 3pik_A 350 EQKIQNAFKEVADALALRQSLNDQISAQQRYLASLQITLQ---RARALYQHGAVSYLEVLDAERSLFATRQTLLDLNYAR 426 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHTTSSCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555444444444444444444444433333 3345566666666666666666555555555555555
Q ss_pred HHHHHHh
Q 010719 432 LSTWINF 438 (503)
Q Consensus 432 v~tWinF 438 (503)
..++++.
T Consensus 427 ~~a~~~L 433 (446)
T 3pik_A 427 QVNEISL 433 (446)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 55
>3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel, antibiotic RES lipoprotein, palmitate, transmemb transport; 2.40A {Pseudomonas aeruginosa} PDB: 1wp1_A
Probab=32.66 E-value=3.5e+02 Score=26.13 Aligned_cols=88 Identities=9% Similarity=0.111 Sum_probs=58.6
Q ss_pred cchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhh
Q 010719 350 ESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVES 429 (503)
Q Consensus 350 Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA 429 (503)
+....+..+..|+...-.+......+++-....+..|...+. -.+.+|+.+..-+++-|.++.+-+...+.--.+..
T Consensus 357 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~y~~G~~~~~dvl~a~~~l~~a~~~~~~a~~ 433 (474)
T 3d5k_A 357 QYEKAIQTAFQEVADGLAARGTFTEQLQAQRDLVKASDEYYQ---LADKRYRTGVDNYLTLLDAQRSLFTAQQQLITDRL 433 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666655555555544443 34567888888888888888888887777777777
Q ss_pred hHHHHHHHhhH
Q 010719 430 DVLSTWINFLE 440 (503)
Q Consensus 430 ~vv~tWinFLe 440 (503)
+...+++++.-
T Consensus 434 ~~~~a~~~L~~ 444 (474)
T 3d5k_A 434 NQLTSEVNLYK 444 (474)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776543
No 56
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=32.53 E-value=77 Score=24.08 Aligned_cols=47 Identities=30% Similarity=0.321 Sum_probs=29.9
Q ss_pred hHhhhhhhhhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 010719 327 EKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVN 380 (503)
Q Consensus 327 EkrI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn 380 (503)
.+|++.|| +.|...|.+|-.-+.++|.. +..|+++-..|..++..+.
T Consensus 3 ~rR~~~NR---esA~rSR~RKk~~~~~LE~~----v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 3 EVRLMKNR---EAARESRRKKKEYVKSLENR----VAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhH---HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 35666665 67889999998666666654 3445555555555555443
No 57
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=31.74 E-value=1.4e+02 Score=26.40 Aligned_cols=84 Identities=12% Similarity=0.213 Sum_probs=47.8
Q ss_pred chhhhhhhhhhhhHHHHHHhccCCChhHHHHHHHHHHhhhcCcHHHHHHHHHhHHHHHHHhccchhhhccChHHHHHHHH
Q 010719 139 NFRDVFLQSQALEAITVSMILEAPNEEEISLLLEMFGLCLTGGKEVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQ 218 (503)
Q Consensus 139 nFrdVFL~SqALE~I~lSmileaP~eeEvsLLlEiFglcL~GGkeVh~aivssiqdLA~afs~y~DEvLvkReELlq~aq 218 (503)
.|++.|.+ ..++|.||..++.++.++..+|--|+.+|-==.+.+...+..+........=.|+--.+=|-+|..
T Consensus 39 ~f~~e~V~------~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~vl~~ldDl~lDiP~A~~~la~~v~ 112 (152)
T 2ion_A 39 HFHHELVY------EAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVE 112 (152)
T ss_dssp GGHHHHHH------HHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHH
T ss_pred cchHHHHH------HHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHhChHhccCccchHHHHHHHHH
Confidence 67777776 456677898888888888888876665542222222222222222222222234555667777877
Q ss_pred HhhhccCcch
Q 010719 219 TAITGLKMNS 228 (503)
Q Consensus 219 ~AisGLK~nA 228 (503)
.||..-=++.
T Consensus 113 ~ai~~g~l~~ 122 (152)
T 2ion_A 113 ECFQAGIISK 122 (152)
T ss_dssp HHHHTTCSCH
T ss_pred HHHHCCCCCH
Confidence 7766544443
No 58
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=30.84 E-value=2.8e+02 Score=24.49 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=17.9
Q ss_pred HHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHH
Q 010719 361 EISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEE 396 (503)
Q Consensus 361 EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEE 396 (503)
++..|+.+.++++.|+..+.-.|..++.++..++.+
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e 111 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKE 111 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555554444433
No 59
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=30.03 E-value=5.2e+02 Score=28.03 Aligned_cols=97 Identities=19% Similarity=0.179 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH-Hhh--------------------H
Q 010719 350 ESSEKEKEIGAEISELV---KQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFD-EAN--------------------D 405 (503)
Q Consensus 350 Ev~~~Ekel~~EI~~Le---kqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFd-EAn--------------------n 405 (503)
|++++||.+..--+.+. +-.+.+..+|.-.|.+|+.|.+ ++++|. -+. +
T Consensus 329 el~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~-------~~~~f~~~n~~p~~~Gh~~w~~~~~~~~~~~ 401 (551)
T 2b5u_A 329 ELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIA-------EIKQFNRFAHDPMAGGHRMWQMAGLKAQRAQ 401 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHGGGTTCTTSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHH-------hhhhhhhhccChhhccchhhhhccchhhhhh
Q ss_pred HHHHHhhhchhHHHHHHhhhhhhhhHHHHHHHhhHhhHHHhhhHHHHHHhhhhHHHhhh
Q 010719 406 QIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKH 464 (503)
Q Consensus 406 qIv~hLk~KedELsksi~sc~vEA~vv~tWinFLedtW~lq~~~~e~kekq~~deler~ 464 (503)
.=+..+++.-|.+.+++..-+++-+.+-- -..-.|.|+|....-|+..
T Consensus 402 ~dv~~~~a~~d~~~~~~s~~~~~ls~~me-----------~Rkq~e~k~k~ae~kl~~e 449 (551)
T 2b5u_A 402 TDVNNKQAAFDAAAKEKSDADAALSSAME-----------SRKKKEDKKRSAENNLNDE 449 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhHHHHHHHHhhcccchhhhhhhhhh-----------cccchhhhhhhhhhccchh
No 60
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=29.95 E-value=1.4e+02 Score=24.06 Aligned_cols=40 Identities=13% Similarity=0.225 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHh------HHHHHHHHHHHHhHHH
Q 010719 357 EIGAEISELVKQRDHLEAELKKVN------LSLAAAQARLRNAQEE 396 (503)
Q Consensus 357 el~~EI~~LekqrdeLEAeLkkVn------~sL~aA~aRl~~~rEE 396 (503)
.|-.+|..||.+..+|+++|..-. ..++....++..+..+
T Consensus 26 ~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~e 71 (89)
T 2lw1_A 26 QLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQE 71 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHH
Confidence 466789999999999999998633 2344444444444433
No 61
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=29.55 E-value=1.7e+02 Score=22.47 Aligned_cols=43 Identities=26% Similarity=0.190 Sum_probs=23.8
Q ss_pred hHHhhhhhhhccccchHHHHHH---HHHHHHHHHhHHHHHHHHHHH
Q 010719 337 KEEALKVRVVKANESSEKEKEI---GAEISELVKQRDHLEAELKKV 379 (503)
Q Consensus 337 KEeAl~fRv~K~~Ev~~~Ekel---~~EI~~LekqrdeLEAeLkkV 379 (503)
++-|..-|-+|-..+..+|.++ ..|-..|..+.+.|..|+..+
T Consensus 11 R~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 11 KMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888877666655432 334444444444444444433
No 62
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=29.33 E-value=34 Score=25.48 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=16.1
Q ss_pred HHHHHHhHHHHHHHHHHHhHHH
Q 010719 362 ISELVKQRDHLEAELKKVNLSL 383 (503)
Q Consensus 362 I~~LekqrdeLEAeLkkVn~sL 383 (503)
|..|+.+.+.||.+|..+...|
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788888888777776654
No 63
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=28.38 E-value=2.8e+02 Score=23.67 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhHH
Q 010719 356 KEIGAEISELVKQRDHLEAELKKVNLS 382 (503)
Q Consensus 356 kel~~EI~~LekqrdeLEAeLkkVn~s 382 (503)
-.|..||+.|..++..||+.|..++..
T Consensus 46 q~L~~el~~l~~~~~~LE~~l~e~e~~ 72 (129)
T 3tnu_B 46 QRLRAEIDNVKKQCANLQNAIADAEQR 72 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 346677788888888888777766543
No 64
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=27.44 E-value=2.9e+02 Score=23.64 Aligned_cols=23 Identities=39% Similarity=0.371 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHh
Q 010719 358 IGAEISELVKQRDHLEAELKKVN 380 (503)
Q Consensus 358 l~~EI~~LekqrdeLEAeLkkVn 380 (503)
...||.+|..+...|++||..+.
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~ 58 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQL 58 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777777665443
No 65
>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1
Probab=26.91 E-value=1e+02 Score=27.68 Aligned_cols=45 Identities=27% Similarity=0.474 Sum_probs=32.3
Q ss_pred HHhccCCChhHHHHHHHH-HHhhhcC-cHH------------HHHHHHHhHHHHHHHhc
Q 010719 156 SMILEAPNEEEISLLLEM-FGLCLTG-GKE------------VHHAITSSIQDLATAIS 200 (503)
Q Consensus 156 SmileaP~eeEvsLLlEi-FglcL~G-Gke------------Vh~aivssiqdLA~afs 200 (503)
..|-+-|+.+|...|+.+ +|.+..| .|+ +-..||..||++...+.
T Consensus 102 ~~Ia~~~d~~el~kLl~LiLg~AV~c~~ke~~I~~I~~L~~~~Q~~im~~Iqev~~~~~ 160 (164)
T 1wix_A 102 NQITECADPVELGRLLQLILGCAVNCEKKQEHIKNIMTLEESVQHVVMTAIQELMSKSG 160 (164)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHHHHHHcccC
Confidence 346677899999777776 6766666 333 45788899998887764
No 66
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=26.79 E-value=55 Score=26.36 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=16.7
Q ss_pred hHhhhhhhhhhHHhhhhhhhccccchHHHHH
Q 010719 327 EKRISDHRSQKEEALKVRVVKANESSEKEKE 357 (503)
Q Consensus 327 EkrI~d~R~QKEeAl~fRv~K~~Ev~~~Eke 357 (503)
++|-.-||. -.-.||.+|..-+..+|..
T Consensus 10 ~kR~~qNR~---AQRafReRK~~~i~~LE~~ 37 (70)
T 1gd2_E 10 SKRKAQNRA---AQRAFRKRKEDHLKALETQ 37 (70)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 455444442 2346999998776665554
No 67
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=26.71 E-value=2.6e+02 Score=26.17 Aligned_cols=27 Identities=30% Similarity=0.319 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHhH
Q 010719 368 QRDHLEAELKKVNLSLAAAQARLRNAQ 394 (503)
Q Consensus 368 qrdeLEAeLkkVn~sL~aA~aRl~~~r 394 (503)
+.++++++|......+..|.+++..++
T Consensus 70 ~~~~~~a~l~~~~a~l~~a~~~~~~a~ 96 (341)
T 3fpp_A 70 QIKEVEATLMELRAQRQQAEAELKLAR 96 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444433
No 68
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=26.69 E-value=3.7e+02 Score=24.57 Aligned_cols=51 Identities=24% Similarity=0.413 Sum_probs=37.4
Q ss_pred HHhHHHHHHHHHHHhHHH-HHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchh
Q 010719 366 VKQRDHLEAELKKVNLSL-AAAQARLRNAQEEREQFDEANDQIVEHLKTKED 416 (503)
Q Consensus 366 ekqrdeLEAeLkkVn~sL-~aA~aRl~~~rEERdqFdEAnnqIv~hLk~Ked 416 (503)
|+++..++.||-.+.++| ..|+--..++|-+|..++.=|.+....|+-++.
T Consensus 78 E~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~ 129 (154)
T 2ocy_A 78 EEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDT 129 (154)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666777777666665 567777788899999999888877777666543
No 69
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=26.64 E-value=2.5e+02 Score=25.33 Aligned_cols=51 Identities=24% Similarity=0.369 Sum_probs=38.9
Q ss_pred HHhHHHHHHHHHHHhHHH-HHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchh
Q 010719 366 VKQRDHLEAELKKVNLSL-AAAQARLRNAQEEREQFDEANDQIVEHLKTKED 416 (503)
Q Consensus 366 ekqrdeLEAeLkkVn~sL-~aA~aRl~~~rEERdqFdEAnnqIv~hLk~Ked 416 (503)
|+++..++.||-.+.++| ..|+--..++|-+|..++.=|.+....|+-++.
T Consensus 66 E~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ 117 (135)
T 2e7s_A 66 EEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDM 117 (135)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666777777766666 567888888999999999988888887776653
No 70
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=26.07 E-value=4.4e+02 Score=25.19 Aligned_cols=119 Identities=16% Similarity=0.116 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhh------HHHHHHhhhchhHHHHHHhhhhhhh
Q 010719 356 KEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEAN------DQIVEHLKTKEDELLKSIAACRVES 429 (503)
Q Consensus 356 kel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAn------nqIv~hLk~KedELsksi~sc~vEA 429 (503)
|++..++..+.+.+.....+|.|.....-.+-.....++ .+|..+. ..=+..++.|.+.+......++.+=
T Consensus 139 K~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~c~e~e~a~---~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~Y 215 (350)
T 3aco_A 139 KEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAI---SREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKY 215 (350)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHTTTTHHHHHHHHHHHH---HHHTTSSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhccCccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677778888888888888888877666555544443333 3443332 1233445555555444444443331
Q ss_pred hHHHHHHHhhHhhHHHhhhHHHHHHhhhhHHHhhhHhHHHHHHHHHHHHHHHhhc
Q 010719 430 DVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKELG 484 (503)
Q Consensus 430 ~vv~tWinFLedtW~lq~~~~e~kekq~~deler~~~~f~~l~~~~ls~~ke~l~ 484 (503)
. .-++=+.. .+..|.+ .=..+.+.++.++-.-+...+..|-.|...|+
T Consensus 216 ~---~~v~~~n~---~~~~~~~-~~~~~~~~~Q~lee~Rl~~lk~~l~~~~~~l~ 263 (350)
T 3aco_A 216 E---KSLKELDQ---GTPQYME-NMEQVFEQCQQFEEKRLRFFREVLLEVQKHLD 263 (350)
T ss_dssp H---HHHHHHHT---THHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred H---HHHHHHHH---HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 11222222 2333432 24556666666665555556565555555554
No 71
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=25.97 E-value=1.3e+02 Score=31.66 Aligned_cols=34 Identities=12% Similarity=0.208 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHH
Q 010719 357 EIGAEISELVKQRDHLEAELKKVNLSLAAAQARL 390 (503)
Q Consensus 357 el~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl 390 (503)
++.+|...|..+..+||++++.++..+...-.++
T Consensus 75 ~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~i 108 (485)
T 3qne_A 75 DLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQV 108 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4566666666666666666666666655444443
No 72
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=25.88 E-value=3.9e+02 Score=25.39 Aligned_cols=66 Identities=15% Similarity=0.173 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhh
Q 010719 357 EIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAA 424 (503)
Q Consensus 357 el~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~s 424 (503)
.+..+|..|+++.++|.+++.+..+-..--+-| ..+|--+...-|...++..|=-=.|.|.+.+.+
T Consensus 63 ~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR--~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~~ 128 (213)
T 4ani_A 63 AAKAQIAELEAKLSEMEHRYLRLYADFENFRRR--TRQEMEAAEKYRAQSLASDLLPVLDNFERALKI 128 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 455667777777777777776666555443333 333444455556777777776778888888764
No 73
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=25.67 E-value=1.6e+02 Score=26.39 Aligned_cols=29 Identities=38% Similarity=0.441 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhH
Q 010719 353 EKEKEIGAEISELVKQRDHLEAELKKVNL 381 (503)
Q Consensus 353 ~~Ekel~~EI~~LekqrdeLEAeLkkVn~ 381 (503)
..+.++...|++|+++..+|+-.|+-..-
T Consensus 6 ~~~~~l~~KvAElekkv~~lek~lk~~~e 34 (125)
T 2pms_C 6 AEEVAPQAKIAELENQVHRLEQELKEIDE 34 (125)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhcch
Confidence 34668899999999999999988876543
No 74
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=25.55 E-value=80 Score=32.32 Aligned_cols=65 Identities=14% Similarity=0.398 Sum_probs=42.1
Q ss_pred eeecCCCCCCcchhhhhhhhhhhhHHHHHHhccCC-ChhHHHHHHHHHHh---hhcCc------------HHHHHHHHHh
Q 010719 128 YYDADFGGEPLNFRDVFLQSQALEAITVSMILEAP-NEEEISLLLEMFGL---CLTGG------------KEVHHAITSS 191 (503)
Q Consensus 128 f~D~d~gGePmnFrdVFL~SqALE~I~lSmileaP-~eeEvsLLlEiFgl---cL~GG------------keVh~aivss 191 (503)
-+|+.+.|+|+.++++||... ++-.-| +.+.+..|-++|-- +|.-| ++.|+.+.+.
T Consensus 348 ~V~~~VngG~~~y~~~Fl~~~--------~~~~~p~~~~~v~~Lk~~~~~~~~~l~~~L~lh~~li~~~~~~~h~~L~~~ 419 (436)
T 2yin_A 348 IVDPAVMGGFAKYEKAFFTEE--------YVRDHPEDQDKLTHLKDLIAWQIPFLGAGIKIHEKRVSDNLRPFHDRMEEC 419 (436)
T ss_dssp HHCCSSSCCTHHHHHHHCSHH--------HHHHCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHH
T ss_pred cccccccccHHHHHHHhcCch--------hhhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 388899999999999999643 333456 45668888777652 22223 3456666666
Q ss_pred HHHHHHHhc
Q 010719 192 IQDLATAIS 200 (503)
Q Consensus 192 iqdLA~afs 200 (503)
.+.+-....
T Consensus 420 f~~l~~~le 428 (436)
T 2yin_A 420 FKNLKMKVE 428 (436)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665555443
No 75
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=25.19 E-value=54 Score=27.60 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHH
Q 010719 357 EIGAEISELVKQRDHLEAELKKVNLSL 383 (503)
Q Consensus 357 el~~EI~~LekqrdeLEAeLkkVn~sL 383 (503)
.|.++|+.|+.|+++|++++......|
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466677777777777777776654443
No 76
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=24.98 E-value=1.2e+02 Score=24.58 Aligned_cols=28 Identities=18% Similarity=0.414 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhHHHHH
Q 010719 358 IGAEISELVKQRDHLEAELKKVNLSLAA 385 (503)
Q Consensus 358 l~~EI~~LekqrdeLEAeLkkVn~sL~a 385 (503)
+..+|..|+++.+.++.++++....|.+
T Consensus 82 ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 82 LEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555443
No 77
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=24.50 E-value=1.4e+02 Score=25.21 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=33.0
Q ss_pred HHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHH
Q 010719 338 EEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQAR 389 (503)
Q Consensus 338 EeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aR 389 (503)
-=|++-|.+|-.+...+|. |...|..+++.|..|+.++...+.+-..+
T Consensus 37 gyAq~CR~Kr~~q~~~LE~----e~~~L~~e~~~L~~e~~~~~~e~d~~k~k 84 (90)
T 2wt7_B 37 GYAQSCRYKRVQQKHHLEN----EKTQLIQQVEQLKQEVSRLARERDAYKVK 84 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999988877775 55566666777777776666555444443
No 78
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=24.48 E-value=2.5e+02 Score=21.77 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=18.0
Q ss_pred HHHHHHHhhHHHHHHhhhchhHHHHHHh
Q 010719 396 EREQFDEANDQIVEHLKTKEDELLKSIA 423 (503)
Q Consensus 396 ERdqFdEAnnqIv~hLk~KedELsksi~ 423 (503)
.+..|| -.+|++|+.|..+|...++
T Consensus 41 rq~~~d---~~~Ie~Le~kv~~l~~~l~ 65 (65)
T 3m0d_C 41 HQSQLD---RERILSLEQRVVELQQTLA 65 (65)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHTC-
T ss_pred HHhhhH---HHHHHHHHHHHHHHHhhhC
Confidence 344454 7789999999998887653
No 79
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=24.09 E-value=5.8e+02 Score=25.89 Aligned_cols=120 Identities=15% Similarity=0.068 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhh------HHHHHHhhhchhHHHHHHhhhhhhh
Q 010719 356 KEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEAN------DQIVEHLKTKEDELLKSIAACRVES 429 (503)
Q Consensus 356 kel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAn------nqIv~hLk~KedELsksi~sc~vEA 429 (503)
|++..++..+++++.....+|.|.......+......+ +.++..|. ..=++.++.|.+........++.
T Consensus 132 K~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke~e~a---~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~~~a~~-- 206 (486)
T 3haj_A 132 KEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLA---ISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKE-- 206 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 66777888888888888888877776665554332222 33344432 12244445554444433333322
Q ss_pred hHHHHHHHhhHhhHHHhhhHHHHHHhhhhHHHhhhHhHHHHHHHHHHHHHHHhhch
Q 010719 430 DVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGP 485 (503)
Q Consensus 430 ~vv~tWinFLedtW~lq~~~~e~kekq~~deler~~~~f~~l~~~~ls~~ke~l~~ 485 (503)
.....|.++=..+..|. ..-.++.+.++..+..-+...+..|-.|...+..
T Consensus 207 ----~Y~~~v~~~n~~~~~y~-~~~~~~~~~lQ~lEeeRi~~lK~~L~~y~~~l~~ 257 (486)
T 3haj_A 207 ----KYEKSLKELDQGTPQYM-ENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDL 257 (486)
T ss_dssp ----HHHHHHHHHHTTSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 23333333333344444 4455666666666666666666666666666543
No 80
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=23.97 E-value=1.4e+02 Score=22.69 Aligned_cols=20 Identities=40% Similarity=0.449 Sum_probs=15.2
Q ss_pred HHHHHHHhHHHHHHHHHHHh
Q 010719 361 EISELVKQRDHLEAELKKVN 380 (503)
Q Consensus 361 EI~~LekqrdeLEAeLkkVn 380 (503)
-+..|+|..|.||++|..-.
T Consensus 13 sV~KLek~ID~LEdeL~~eK 32 (52)
T 2z5i_A 13 EVARLKKLVDDLEDELYAQK 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhH
Confidence 35679999999999886443
No 81
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=22.92 E-value=4.8e+02 Score=24.52 Aligned_cols=97 Identities=20% Similarity=0.255 Sum_probs=48.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhHHHHHHH----HHhhHHHHHHhhhchhHHHHHHhhhhhhhhHHHHHHHhhHhhHHHh
Q 010719 371 HLEAELKKVNLSLAAAQARLRNAQEEREQF----DEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVLQ 446 (503)
Q Consensus 371 eLEAeLkkVn~sL~aA~aRl~~~rEERdqF----dEAnnqIv~hLk~KedELsksi~sc~vEA~vv~tWinFLedtW~lq 446 (503)
+||++|...+..+.....++...+.|.+.. +..+++.- +...-|-+.|...+.+-..+..-|-
T Consensus 46 ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~----~~~~~Lq~el~~l~~~~~~l~~~ir--------- 112 (189)
T 2v71_A 46 ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSY----KQVSVLEDDLSQTRAIKEQLHKYVR--------- 112 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 566666666666666666666666665543 44433322 2223333333333333333333332
Q ss_pred hhHHHHHHhhhhHHHhhhHhHHHHHHHHHHHHHHHhhchhhHHH
Q 010719 447 CSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPSISRI 490 (503)
Q Consensus 447 ~~~~e~kekq~~deler~~~~f~~l~~~~ls~~ke~l~~~i~~i 490 (503)
+=.|.||+|||-.-. +..-|..+...|...|+|+
T Consensus 113 ------eLEq~NDdlEr~~R~----~~~SleD~e~kln~aiEr~ 146 (189)
T 2v71_A 113 ------ELEQANDDLERAKRA----TIMSLEDFEQRLNQAIERN 146 (189)
T ss_dssp ------HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHhhHHHHHHHH----HHhhHHHHHHHHHHHHHHH
Confidence 224778888887654 3334444444455555543
No 82
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.78 E-value=3.6e+02 Score=22.99 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=15.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhHH
Q 010719 359 GAEISELVKQRDHLEAELKKVNLS 382 (503)
Q Consensus 359 ~~EI~~LekqrdeLEAeLkkVn~s 382 (503)
..||.+|..+...|+++|.-+...
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~ 58 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQ 58 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 456777777777777766544333
No 83
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=22.76 E-value=2.4e+02 Score=25.25 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=20.0
Q ss_pred HHhHHHHHHHHHHHhHHHHHHHHHHHHhH
Q 010719 366 VKQRDHLEAELKKVNLSLAAAQARLRNAQ 394 (503)
Q Consensus 366 ekqrdeLEAeLkkVn~sL~aA~aRl~~~r 394 (503)
+++..+|+.|++.+|.+|-.|.+.+...|
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr 98 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLR 98 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777766655444
No 84
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=22.18 E-value=1.1e+02 Score=24.54 Aligned_cols=37 Identities=14% Similarity=0.280 Sum_probs=0.0
Q ss_pred ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHH
Q 010719 349 NESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAA 385 (503)
Q Consensus 349 ~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~a 385 (503)
..+...-+.+..+|..|+++.+.++.++++....|.+
T Consensus 68 ~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 68 EELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 85
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=22.13 E-value=1.1e+02 Score=30.49 Aligned_cols=56 Identities=7% Similarity=0.234 Sum_probs=44.2
Q ss_pred hhhhhhhhhhhhHHHHHHhccCCChhHHHHHHHHHH-hhhcCcHH-HHHHHHHhHHHHHH
Q 010719 140 FRDVFLQSQALEAITVSMILEAPNEEEISLLLEMFG-LCLTGGKE-VHHAITSSIQDLAT 197 (503)
Q Consensus 140 FrdVFL~SqALE~I~lSmileaP~eeEvsLLlEiFg-lcL~GGke-Vh~aivssiqdLA~ 197 (503)
+..|+-+.+.+..|+.+ +.+|+..-+.+.+|+++ +|+..+.+ =|..+++++...+.
T Consensus 154 ~~~vl~~~~~i~~l~~~--L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~ 211 (383)
T 3eg5_B 154 IKTMLETEEGILLLVRA--MDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 211 (383)
T ss_dssp HHHHHTCSSHHHHHHHT--CCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHH--hCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHH
Confidence 55677777888877777 67889999999999998 79887634 38999998877665
No 86
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=22.11 E-value=2.3e+02 Score=22.96 Aligned_cols=43 Identities=23% Similarity=0.288 Sum_probs=28.6
Q ss_pred ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHH
Q 010719 349 NESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLR 391 (503)
Q Consensus 349 ~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~ 391 (503)
..+..+...|...+..+++..+.|+.+++.+...++.....|.
T Consensus 66 ~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 66 TTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777777777777777777776666555543
No 87
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=21.93 E-value=8e+02 Score=26.75 Aligned_cols=128 Identities=14% Similarity=0.124 Sum_probs=79.5
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhh
Q 010719 351 SSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESD 430 (503)
Q Consensus 351 v~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~ 430 (503)
+...|+.|..-|.+|..+.+++..-=+.++.-.+.-.--|+.......+.|...|||- +||.+.|..-+.+-+
T Consensus 55 LdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S-------~ELRRrIqyLKekVd 127 (562)
T 3ghg_A 55 IDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVS-------EDLRSRIEVLKRKVI 127 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTT-------HHHHHHHHHHHHHHH
T ss_pred HHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHH-------HHHHHHHHHHHHHHH
Confidence 4567888888888888888888555555555555444445555555556666666664 355555555555555
Q ss_pred HHHHHHHhhHhhHHHhhhHHHHHHhhhhHHHhhhH-------------hHHHHHHHHHHHHHHHhhch
Q 010719 431 VLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHE-------------DYFVNLAISLLSAYKKELGP 485 (503)
Q Consensus 431 vv~tWinFLedtW~lq~~~~e~kekq~~deler~~-------------~~f~~l~~~~ls~~ke~l~~ 485 (503)
..-+=|.=|+..=.=|.+-++.=|..+.--|+-|. ..+.++=++|...--.-|-|
T Consensus 128 nQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~a~dL~p 195 (562)
T 3ghg_A 128 EKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIAKDLLP 195 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHhhcccCC
Confidence 55466666666655566555555666666666663 35677777776666666655
No 88
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=21.09 E-value=1.2e+02 Score=33.83 Aligned_cols=49 Identities=16% Similarity=0.131 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHHHH----HHHHHHHhHHHHHHHHHhhH
Q 010719 357 EIGAEISELVKQRDHLEAELKKVNLSLAA----AQARLRNAQEEREQFDEAND 405 (503)
Q Consensus 357 el~~EI~~LekqrdeLEAeLkkVn~sL~a----A~aRl~~~rEERdqFdEAnn 405 (503)
.+.+|+..|+|+...++.++++++.+|+. +.|--....+||+...++..
T Consensus 797 d~~~~~~rl~k~~~~~~~~~~~~~~~l~~~~f~~~ap~~~~~~~~~~~~~~~~ 849 (862)
T 1gax_A 797 DVEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLE 849 (862)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSSSCTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhCCHHHHHHHHHHHHHHHH
Confidence 46788999999999999999998888765 22222334445554444433
No 89
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.98 E-value=1.8e+02 Score=29.69 Aligned_cols=43 Identities=16% Similarity=0.257 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Q 010719 357 EIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQ 399 (503)
Q Consensus 357 el~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdq 399 (503)
+|..|+.+|..++.+|+.+.++....+.....++....-+|.+
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~ 49 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKE 49 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666554444443
No 90
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=20.82 E-value=2.5e+02 Score=23.50 Aligned_cols=62 Identities=15% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhH----------HHHHHhhhh
Q 010719 362 ISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDE----------LLKSIAACR 426 (503)
Q Consensus 362 I~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedE----------Lsksi~sc~ 426 (503)
|+.|+++++.||.+|..++...+. .+.+.+..-...+..-.++..-+..+-.| |...|+.|+
T Consensus 14 ~~~Lq~~~~~LE~~l~e~E~~~~~---e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYr 85 (95)
T 3mov_A 14 YFQGQKESRACLERIQELEDLLAK---EKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYR 85 (95)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 91
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.67 E-value=4e+02 Score=22.82 Aligned_cols=49 Identities=24% Similarity=0.411 Sum_probs=35.6
Q ss_pred HHhHHHHHHHHHHHhHHH-HHHHHHHHHhHHHHHHHHHhhHHHHHHhhhc
Q 010719 366 VKQRDHLEAELKKVNLSL-AAAQARLRNAQEEREQFDEANDQIVEHLKTK 414 (503)
Q Consensus 366 ekqrdeLEAeLkkVn~sL-~aA~aRl~~~rEERdqFdEAnnqIv~hLk~K 414 (503)
|+++..++.||-.+.++| ..|+--..+++-+|..++.=|.+...-|+-|
T Consensus 46 E~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d~ 95 (97)
T 2eqb_B 46 EEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREK 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455555555666555555 5677778888999999999998888877654
No 92
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=20.37 E-value=8e+02 Score=26.18 Aligned_cols=41 Identities=15% Similarity=0.145 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHH
Q 010719 358 IGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEERE 398 (503)
Q Consensus 358 l~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERd 398 (503)
+...+..|++..++++++|.+++..+..........+++=+
T Consensus 350 i~~~l~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~ 390 (695)
T 2j69_A 350 VARRIPLLEQDVNELKKRIDSVEPEFNKLTGIRDEFQKEII 390 (695)
T ss_dssp HHHHHHHHTSCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666777777777766666665555555444433
No 93
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=20.03 E-value=39 Score=28.11 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=15.1
Q ss_pred cchhcHHHHHHHHHHHh
Q 010719 54 RSFKSVNQTIRRLEEAA 70 (503)
Q Consensus 54 rn~kS~~~tvkRLEeaa 70 (503)
-||-||..|+++||+-.
T Consensus 37 ~~~~~~EKTIDDLEDkL 53 (77)
T 3mtu_E 37 VNYGSFVSEYNDLEEKV 53 (77)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 48999999999999865
Done!