Query 010719
Match_columns 503
No_of_seqs 29 out of 31
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 12:49:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010719.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010719hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qvra2 c.37.1.20 (A:149-535) 83.4 6.7 0.00048 37.2 13.0 80 356-435 285-385 (387)
2 d1zyma1 a.60.10.1 (A:22-144) E 69.0 9.8 0.00071 30.3 8.2 65 394-460 16-80 (123)
3 d1ivsa1 a.2.7.3 (A:797-862) Va 62.0 9.8 0.00072 27.5 6.3 27 358-384 2-28 (66)
4 d1wp1a_ f.5.1.1 (A:) Outer mem 44.7 70 0.0051 28.5 10.5 86 351-439 358-443 (456)
5 d1ek9a_ f.5.1.1 (A:) Integral 43.0 98 0.0071 26.6 11.3 88 348-438 313-400 (428)
6 d3bi1a1 a.48.2.1 (A:594-750) G 37.1 15 0.0011 29.9 4.2 87 25-145 4-99 (157)
7 d2efla1 a.238.1.4 (A:1-288) Fo 32.0 1.3E+02 0.0093 24.7 24.5 32 356-387 114-145 (288)
8 d1st6a3 a.24.9.1 (A:253-371) V 29.8 49 0.0036 27.1 6.2 38 280-317 70-113 (119)
9 d1de4c1 a.48.2.1 (C:609-756) T 24.2 53 0.0039 27.1 5.5 36 58-94 40-75 (148)
10 d1ivsa1 a.2.7.3 (A:797-862) Va 22.1 95 0.0069 21.9 5.9 49 226-279 2-50 (66)
11 d1fxkc_ a.2.5.1 (C:) Prefoldin 22.0 62 0.0045 25.1 5.3 21 228-248 1-21 (133)
No 1
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=83.36 E-value=6.7 Score=37.24 Aligned_cols=80 Identities=24% Similarity=0.349 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhHHHHHH---HHHHHHhHHHH------HHHHHhhH---HHHHHhhhchhHHHHHHh
Q 010719 356 KEIGAEISELVKQRDHLEAELKKVNLSLAAA---QARLRNAQEER------EQFDEAND---QIVEHLKTKEDELLKSIA 423 (503)
Q Consensus 356 kel~~EI~~LekqrdeLEAeLkkVn~sL~aA---~aRl~~~rEER------dqFdEAnn---qIv~hLk~KedELsksi~ 423 (503)
+++..||..|+.+.+.|+++.+.....+..- ...+.+++-+- ..|+.|.. ..+-.|+.+.+.+.+...
T Consensus 285 ~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~~Le~lr~~le~A~r~gd~e~AaeL~y~~ip~le~el~~l~~~~~ 364 (387)
T d1qvra2 285 KAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLR 364 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHSS
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhchHHHHHHHHHHHHHHhc
Confidence 5666777777777777777666655544332 22333322221 12333332 234556666555554432
Q ss_pred ---------hhhhhhhHHHHH
Q 010719 424 ---------ACRVESDVLSTW 435 (503)
Q Consensus 424 ---------sc~vEA~vv~tW 435 (503)
+-...|.||+.|
T Consensus 365 ~~~lvr~~VteedIA~VVSrW 385 (387)
T d1qvra2 365 GARFVRLEVTEEDIAEIVSRW 385 (387)
T ss_dssp SCSSCCSEECHHHHHHHHHTT
T ss_pred CCCCCcCccCHHHHHHHHHhh
Confidence 225578888887
No 2
>d1zyma1 a.60.10.1 (A:22-144) Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain {Escherichia coli [TaxId: 562]}
Probab=69.04 E-value=9.8 Score=30.25 Aligned_cols=65 Identities=18% Similarity=0.237 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhHHHHHHHhhHhhHHHhhhHHHHHHhhhhHH
Q 010719 394 QEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEE 460 (503)
Q Consensus 394 rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~vv~tWinFLedtW~lq~~~~e~kekq~~de 460 (503)
.+|-..|..|-......|+.-.+.+..... ..++.++.+-+-+|+|....+.-...+++...|-|
T Consensus 16 ~~E~~rl~~A~~~~~~~L~~l~~~~~~~~~--~e~a~If~ah~~iL~D~~l~~~v~~~I~~~~~~Ae 80 (123)
T d1zyma1 16 DQEVERFLSGRAKASAQLETIKTKAGETFG--EEKEAIFEGHIMLLEDEELEQEIIALIKDKHMTAD 80 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHcCchHHHHHHHHHHccCcchH
Confidence 344555555555555555544444443333 35688999999999999999988888888877666
No 3
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=62.01 E-value=9.8 Score=27.50 Aligned_cols=27 Identities=19% Similarity=0.042 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhHHHH
Q 010719 358 IGAEISELVKQRDHLEAELKKVNLSLA 384 (503)
Q Consensus 358 l~~EI~~LekqrdeLEAeLkkVn~sL~ 384 (503)
+..|+..|+|..+.++.++.+++..|+
T Consensus 2 ~~~E~~RL~K~l~kl~~~i~~~~~kL~ 28 (66)
T d1ivsa1 2 VEEWRRRQEKRLKELLALAERSQRKLA 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 568999999999999999999888876
No 4
>d1wp1a_ f.5.1.1 (A:) Outer membrane protein OprM {Pseudomonas aeruginosa [TaxId: 287]}
Probab=44.72 E-value=70 Score=28.49 Aligned_cols=86 Identities=10% Similarity=0.106 Sum_probs=60.3
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhh
Q 010719 351 SSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESD 430 (503)
Q Consensus 351 v~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~ 430 (503)
.......+..++...-.+......++.-....+..|...+ +-.+.+|+.+..-+++-|.++.+-+...+.--.+..+
T Consensus 358 ~~~~~~~i~~~v~~~~~~~~~~~~~l~~~~~~~~~a~~~~---~~~~~~y~~G~~s~~dll~a~~~l~~a~~~~~~a~~~ 434 (456)
T d1wp1a_ 358 YEKAIQTAFQEVADGLAARGTFTEQLQAQRDLVKASDEYY---QLADKRYRTGVDNYLTLLDAQRSLFTAQQQLITDRLN 434 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH---HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666666666666666555443 4455688888888999888888888888888888888
Q ss_pred HHHHHHHhh
Q 010719 431 VLSTWINFL 439 (503)
Q Consensus 431 vv~tWinFL 439 (503)
...+|++..
T Consensus 435 ~~~a~~~L~ 443 (456)
T d1wp1a_ 435 QLTSEVNLY 443 (456)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777653
No 5
>d1ek9a_ f.5.1.1 (A:) Integral outer membrane protein TolC, efflux pump component {Escherichia coli [TaxId: 562]}
Probab=42.99 E-value=98 Score=26.57 Aligned_cols=88 Identities=8% Similarity=0.106 Sum_probs=58.0
Q ss_pred cccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhh
Q 010719 348 ANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRV 427 (503)
Q Consensus 348 ~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~v 427 (503)
..+.......+..++..+..+...+..+++-....+..|... ....+.+|+.+..-+++-|.+..+-+...+.--++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~---~~~~~~~y~~G~~s~~dll~a~~~~~~a~~~~~~a 389 (428)
T d1ek9a_ 313 SEQLESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSS---LDAMEAGYSVGTRTIVDVLDATTTLYNAKQELANA 389 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777777777777666666655543 34455678888888887777766666665555555
Q ss_pred hhhHHHHHHHh
Q 010719 428 ESDVLSTWINF 438 (503)
Q Consensus 428 EA~vv~tWinF 438 (503)
..+...+++++
T Consensus 390 ~~~~~~a~~~L 400 (428)
T d1ek9a_ 390 RYNYLINQLNI 400 (428)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 6
>d3bi1a1 a.48.2.1 (A:594-750) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.05 E-value=15 Score=29.89 Aligned_cols=87 Identities=17% Similarity=0.217 Sum_probs=0.0
Q ss_pred hhhhhhHHHHhhchhhhhhhhhhhhcccccc--hhcHHHHHHHHHHHhhhcCchhH------HHHHHHHHHHHHHHhhhh
Q 010719 25 VKNYADNVVHQAGQAVAEGAKILQDRIGVRS--FKSVNQTIRRLEEAALSCRGPER------VMLLRRWLTVLKEVEKLY 96 (503)
Q Consensus 25 V~~yadsVv~~aGqAVa~GAkil~dRi~~rn--~kS~~~tvkRLEeaavscrG~ER------vqlLRRWL~aLkeie~~s 96 (503)
+.+||+.+-.+ -+.+-.-++=..+.+...| +..+..++.+++.+|..+.-... ...+|+|=..|..+||
T Consensus 4 ~~~Ya~~L~~~-~~~l~~~~~~~~~~l~~~~~~~~~L~~a~~~f~~aa~~~~~~~~~~~~~~~~~~r~~N~~L~~~Er-- 80 (157)
T d3bi1a1 4 CRDYAVVLRKY-ADKIYSISMKHPQEMKTYSVSFDSLFSAVKNFTEIASKFSERLQDFDKSNPIVLRMMNDQLMFLER-- 80 (157)
T ss_dssp HHHHHHHHHHH-HHHHHHHHTTCHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH--
Q ss_pred cCCCcccchhhhhcccccccccCCCCCceeEeeecC-CCCCCcchhhhhh
Q 010719 97 GLLSEDKEKLQEQLDAFDEAKDGPRKPSLVLYYDAD-FGGEPLNFRDVFL 145 (503)
Q Consensus 97 ~~~~~~~~~~~~q~~~s~e~~~~p~~~~~vlf~D~d-~gGePmnFrdVFL 145 (503)
.|.|++ .+|.| -||+|+.
T Consensus 81 ------------------------------~Fl~~~GlpgR~-~~kHvi~ 99 (157)
T d3bi1a1 81 ------------------------------AFIDPLGLPDRP-FYRHVIY 99 (157)
T ss_dssp ------------------------------TTBCTTCBTTBT-TCCBSSE
T ss_pred ------------------------------HhcCccCCCCCC-ccceeee
No 7
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.98 E-value=1.3e+02 Score=24.67 Aligned_cols=32 Identities=6% Similarity=-0.094 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHH
Q 010719 356 KEIGAEISELVKQRDHLEAELKKVNLSLAAAQ 387 (503)
Q Consensus 356 kel~~EI~~LekqrdeLEAeLkkVn~sL~aA~ 387 (503)
|.+..+...+++.......+|.+.......+.
T Consensus 114 K~~~~~~~k~~k~~~~~~~~l~k~k~~Y~~~~ 145 (288)
T d2efla1 114 KSNFHDGRKAQQHIETCWKQLESSKRRFERDC 145 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555554444444444444444333
No 8
>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=29.85 E-value=49 Score=27.14 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=24.6
Q ss_pred HHHHhhhhhhhhhh---hhccCCCChhhH---HHHhhHHHHHHH
Q 010719 280 IRVCTRLEGLLLKK---KLLSYGDSPEVH---AQKVDKLKVLSE 317 (503)
Q Consensus 280 iRlcS~lE~lllkk---k~~~~Gdspe~h---a~kvdkLkvlsE 317 (503)
+++|..++.+.-.= ..-.-|+||+.+ .|--+||+.|.-
T Consensus 70 l~~c~ei~~lt~qLadLr~~G~G~sPeA~~lA~qi~~kL~~L~~ 113 (119)
T d1st6a3 70 LGTCKTLGQMTDQLADLRARGQGATPMAMQKAQQVSQGLDLLTA 113 (119)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88998888776442 223568999987 233456666443
No 9
>d1de4c1 a.48.2.1 (C:609-756) Transferrin receptor ectodomain, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.21 E-value=53 Score=27.11 Aligned_cols=36 Identities=11% Similarity=0.126 Sum_probs=21.7
Q ss_pred cHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHhh
Q 010719 58 SVNQTIRRLEEAALSCRGPERVMLLRRWLTVLKEVEK 94 (503)
Q Consensus 58 S~~~tvkRLEeaavscrG~ERvqlLRRWL~aLkeie~ 94 (503)
.|..+++++++..-+..... +..+|+|=..|..+|+
T Consensus 40 ~f~~AA~~f~~~~~~~~~~~-~~~~R~~N~~l~~~Er 75 (148)
T d1de4c1 40 DFFRATSRLTTDFGNAEKTD-RFVMKKLNDRVMRVEY 75 (148)
T ss_dssp HHHHHHHHHHHHHHTSCTTC-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCC-HHHHHHHHHHHHHHHH
Confidence 45555555555544444333 3456788888888888
No 10
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=22.06 E-value=95 Score=21.91 Aligned_cols=49 Identities=18% Similarity=0.119 Sum_probs=33.5
Q ss_pred cchhhhhhhhHHHHHHHHHhHHhhhccCCchhhhhhhhhhhHHHHHHHHHHHHH
Q 010719 226 MNSDIERIDAEASDLKKRLEGMKALQNSSNEDLEQASEKTTKATIEALKEALAQ 279 (503)
Q Consensus 226 ~nAdiariD~Ea~~L~~kl~~~~~~~~~s~~~~~~~~e~t~~a~~ea~k~al~q 279 (503)
+.+.+.||+-+...+.+.++... ...+..+|-.++++. +++.-++-+++
T Consensus 2 ~~~E~~RL~K~l~kl~~~i~~~~-~kL~N~~F~~kAP~~----Vv~~~k~kl~~ 50 (66)
T d1ivsa1 2 VEEWRRRQEKRLKELLALAERSQ-RKLASPGFREKAPKE----VVEAEEARLKE 50 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHTSTTHHHHSCTT----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHCChHHHHhCCHH----HHHHHHHHHHH
Confidence 45678888888888888888887 566667777766644 44544444443
No 11
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=22.04 E-value=62 Score=25.13 Aligned_cols=21 Identities=14% Similarity=0.211 Sum_probs=13.0
Q ss_pred hhhhhhhhHHHHHHHHHhHHh
Q 010719 228 SDIERIDAEASDLKKRLEGMK 248 (503)
Q Consensus 228 AdiariD~Ea~~L~~kl~~~~ 248 (503)
|++..|-.....|++.++...
T Consensus 1 a~L~eL~~~~~~l~~~l~~l~ 21 (133)
T d1fxkc_ 1 AALAEIVAQLNIYQSQVELIQ 21 (133)
T ss_dssp CTHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666665
Done!