Query 010720
Match_columns 503
No_of_seqs 233 out of 1515
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 03:48:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010720.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010720hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14655 mraY phospho-N-acetyl 100.0 5.8E-68 1.3E-72 538.7 26.9 291 181-498 2-299 (304)
2 PRK14654 mraY phospho-N-acetyl 100.0 6.1E-64 1.3E-68 509.4 31.5 294 181-497 3-296 (302)
3 TIGR00445 mraY phospho-N-acety 100.0 3.6E-59 7.7E-64 478.3 30.9 298 189-497 3-316 (321)
4 PRK00108 mraY phospho-N-acetyl 100.0 2E-58 4.4E-63 476.7 34.8 314 174-498 9-340 (344)
5 COG0472 Rfe UDP-N-acetylmuramy 100.0 2.4E-56 5.3E-61 456.9 30.0 295 179-499 8-313 (319)
6 cd06852 GT_MraY Phospho-N-acet 100.0 7E-52 1.5E-56 417.2 30.3 276 212-497 2-279 (280)
7 TIGR02380 ECA_wecA undecapreny 100.0 1.3E-50 2.9E-55 418.7 32.0 287 181-497 5-307 (346)
8 PRK15119 undecaprenyl-phosphat 100.0 1.4E-49 3E-54 413.6 32.0 288 180-497 10-311 (365)
9 cd06854 GT_WbpL_WbcO_like The 100.0 6.9E-49 1.5E-53 390.0 23.9 238 212-480 6-253 (253)
10 cd06853 GT_WecA_like This subf 100.0 3.4E-46 7.3E-51 369.7 24.4 236 214-475 1-249 (249)
11 cd06855 GT_GPT_euk UDP-GlcNAc: 100.0 1.1E-42 2.4E-47 351.1 26.3 254 193-467 3-279 (283)
12 cd06856 GT_GPT_archaea UDP-Glc 100.0 7.6E-42 1.6E-46 344.6 28.5 261 216-495 8-280 (280)
13 cd06851 GT_GPT_like This famil 100.0 1.2E-40 2.6E-45 325.9 23.2 207 214-438 6-222 (223)
14 cd06912 GT_MraY_like This subf 100.0 3.1E-39 6.8E-44 309.6 20.4 188 213-416 3-192 (193)
15 cd06499 GT_MraY-like Glycosylt 100.0 2.1E-38 4.6E-43 302.1 19.9 184 220-417 1-185 (185)
16 PF00953 Glycos_transf_4: Glyc 100.0 3.7E-32 8.1E-37 252.9 17.2 154 251-421 4-159 (159)
17 KOG2788 Glycosyltransferase [C 99.8 2.6E-18 5.6E-23 174.2 10.6 181 251-445 104-303 (418)
18 PF10555 MraY_sig1: Phospho-N- 96.4 0.00074 1.6E-08 38.1 -0.0 12 218-229 1-12 (13)
19 PHA00458 single-stranded DNA-b 71.7 2.7 5.7E-05 42.0 2.2 33 55-87 167-204 (233)
20 PF06809 NPDC1: Neural prolife 60.7 4.9 0.00011 42.1 1.7 86 17-108 221-317 (341)
21 COG4589 Predicted CDP-diglycer 35.4 2.4E+02 0.0053 29.2 9.0 18 252-269 241-258 (303)
22 PRK12287 tqsA pheromone autoin 32.5 2.2E+02 0.0047 29.8 8.7 54 133-201 1-54 (344)
23 PF02225 PA: PA domain; Inter 29.3 39 0.00085 28.0 2.1 47 76-123 53-99 (101)
24 PRK10452 multidrug efflux syst 24.2 5.3E+02 0.011 23.4 8.5 41 325-365 3-43 (120)
25 PF06072 Herpes_US9: Alphaherp 24.0 2.3E+02 0.0049 23.0 5.3 9 114-122 6-14 (60)
26 PF15259 GTSE1_N: G-2 and S-ph 23.5 46 0.001 31.2 1.5 20 87-106 19-38 (141)
27 PF13465 zf-H2C2_2: Zinc-finge 23.3 26 0.00056 23.0 -0.1 12 6-17 1-12 (26)
28 PF06942 GlpM: GlpM protein; 22.2 5.9E+02 0.013 23.0 8.9 46 118-163 33-80 (107)
No 1
>PRK14655 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional
Probab=100.00 E-value=5.8e-68 Score=538.72 Aligned_cols=291 Identities=29% Similarity=0.391 Sum_probs=247.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCCCCCCCcccccchhHHHHHHHHHH---HhccchhhHHHHHHHHHH
Q 010720 181 FISAVLVSCAGYICVPLLKSLKIRQIIRKEGPARHSRKGRTPTMGGLFFVPIGIAVTIA---TVGFSSLQVSGASAATLA 257 (503)
Q Consensus 181 ~ls~lis~~l~~l~Ip~L~~l~~~~~ir~d~p~r~~hk~~tPtmGGI~ii~~~li~~~l---~~~~~~~~i~~ll~~tl~ 257 (503)
+.+++++.++++.++++++|.+..|.+|+|+|++|.||++||||||+++++..++...+ +....+.+.+.++.+++.
T Consensus 2 ~~s~~ls~~~~p~~i~~l~~~~~~q~ir~dgP~~~~~k~~tPtmGGi~ii~~~li~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (304)
T PRK14655 2 VVAALLSWFLVGLFIRYSKARGWGQPVRQDGPQTHLAKEGTPTAGGVAFVLALALVFFPLYAFGHAGGERELLIMLAALA 81 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcccccCcccccCCCCCCCcChHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHH
Confidence 35778899999999999999999999999999999999999999999998643333332 212222233445566778
Q ss_pred HHHHHHHhhhhhhhhcC----CCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCCccceeeecccccccchhhhHHHHHHH
Q 010720 258 IALIGLIDDVICLVKNH----SSGLSAWSRLILEVAVGTWFSFWLDATSIPSPYGMKMLVPLPAPLGLLFLGKFYLLLTS 333 (503)
Q Consensus 258 ~~lIG~lDD~~~l~~k~----~~GLs~~~KLllQi~aall~~l~~~~~~i~~~~~~~~~ip~~~~~g~i~lg~l~~~lti 333 (503)
++++|++||+.|+.+|+ |+|++++.|+++|++++..+..+.... .....+|+ ..+++++++++
T Consensus 82 ~~~iG~~DD~~kl~~~~~~~~~~gL~~~~Kl~~Q~l~a~~~~~~~~~~------~~~~~~~~-------~~~~~~~~~~~ 148 (304)
T PRK14655 82 MGVVGGIDDFLKIRSRMRGHGKKELLAREKFPLQFLVALVFAGFAAPL------ASHELLPS-------LGPVFDVLLIA 148 (304)
T ss_pred HHHHHHHhhhhhhhccccccccCCCCHHHHHHHHHHHHHHHHHHHhcc------cccccccc-------hhhHHHHHHHH
Confidence 99999999999999887 899999999999999987765332110 10111221 24578899999
Q ss_pred HHHHHHhhhhhcccCCCchhhHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhhcCccCCccccCchhHHHHHHHH
Q 010720 334 FTFVSMGNGVNLTDGLDGLAGGTAALAFIGMSIAVLPICSELSIFGASMAGACVGFLLHNRYRASVFMGDTGSLALGGAL 413 (503)
Q Consensus 334 ~~iv~~sNAvNl~DGlDGLA~G~siI~~~~L~i~~~~~~~~l~i~~~alaGAllGFL~fN~~PAKIFMGDtGSl~LG~~L 413 (503)
+++++++||+|+|||+||||+|++++++.+++. +..++++++|||+|||+||+||||||||||||+++|+++
T Consensus 149 ~~iv~~~NAvNl~DGLDGLa~g~~~i~~~~l~~--------~~~~~~~l~Ga~lGFL~fN~~PAkIFMGDtGSl~LG~~l 220 (304)
T PRK14655 149 LVMVGSVNAFNFTDGLDGLLAGVAMIVLLPLLA--------VSPVSALLVAVLLGFLWFNAHPARVFMGDMGSHAIGAVA 220 (304)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhcCcccEEeeccchHHHHHHH
Confidence 999999999999999999999999999887753 345788999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhheeeecCCCCCCCCCCChhhHHHhhcCCChhHHHHHHHHHHHHHHH
Q 010720 414 ASMAACTGMFFPLFVSSGIFVVEASSVIMQVLYFKITKHLLGGGRRLFRMAPFHHHLELCGLKEPMIVAGAYVISSVLAL 493 (503)
Q Consensus 414 A~iaI~~~~~~~llil~gifiie~lsvIiQV~~fK~~rR~~g~GkriF~~~pLHH~l~~~G~se~~iV~~~~~i~~llal 493 (503)
|.+++..+.|+.+++++++|++|++||++||.|||.+ |||+|+|+|+|||+|++||+|.|+|.+||+++.++++
T Consensus 221 a~~ai~~~~~~~l~i~g~ifv~e~lSviiQv~~fk~~------gkrif~maPiHhHfe~~Gw~e~~iv~~fwii~~~~~~ 294 (304)
T PRK14655 221 AGAYILYADVWLLPIAAIIPVVAVLSVVIQVASFRLR------GKRVFRMSPIQHHFELSGWPETHVTLRFWVVTAIATA 294 (304)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhheeEEEEEEEEc------CeeeccCCchHHHHHhcCCCcceehhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999974 6899999999999999999999999999999999999
Q ss_pred HHHHH
Q 010720 494 FAGYV 498 (503)
Q Consensus 494 l~i~~ 498 (503)
+++|+
T Consensus 295 ~~~~~ 299 (304)
T PRK14655 295 AVWWL 299 (304)
T ss_pred HHHHH
Confidence 99876
No 2
>PRK14654 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional
Probab=100.00 E-value=6.1e-64 Score=509.37 Aligned_cols=294 Identities=33% Similarity=0.449 Sum_probs=243.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCCCCCCCcccccchhHHHHHHHHHHHhccchhhHHHHHHHHHHHHH
Q 010720 181 FISAVLVSCAGYICVPLLKSLKIRQIIRKEGPARHSRKGRTPTMGGLFFVPIGIAVTIATVGFSSLQVSGASAATLAIAL 260 (503)
Q Consensus 181 ~ls~lis~~l~~l~Ip~L~~l~~~~~ir~d~p~r~~hk~~tPtmGGI~ii~~~li~~~l~~~~~~~~i~~ll~~tl~~~l 260 (503)
.++++++.++++.++|+++|.+..|.+|+++|++|.+|++||+|||+++++++++.+.+. .+....+.+++.+++
T Consensus 3 ~~sf~~s~~~~p~~i~~~~k~~~~~~ir~~g~~~H~~k~~tP~mGGi~i~~~~~~~~~~~-----~~~~~~l~~~~~~~~ 77 (302)
T PRK14654 3 AANFLLNLFLYPILIKLFRRRRIGQYIRKEGPDLHGYKEGTPTMGGILFVLTGFLFGMIS-----KTNTMVLLGMFLFFL 77 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCcccccccccccCCCCCcCCcHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999998888899999999999986444332221 111233456678899
Q ss_pred HHHHhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCCccceeeecccccccchhhhHHHHHHHHHHHHHh
Q 010720 261 IGLIDDVICLVKNHSSGLSAWSRLILEVAVGTWFSFWLDATSIPSPYGMKMLVPLPAPLGLLFLGKFYLLLTSFTFVSMG 340 (503)
Q Consensus 261 IG~lDD~~~l~~k~~~GLs~~~KLllQi~aall~~l~~~~~~i~~~~~~~~~ip~~~~~g~i~lg~l~~~lti~~iv~~s 340 (503)
+|++||+.|+.+|+++|++++.|+++|+++++++..+... .. .+|+.. ..+++++++++++++++++++
T Consensus 78 iG~lDD~~~l~~~~~~gL~~~~Kl~~q~~~a~~~~~~~~~-~~--------~~~~~~--~~~~lg~~~~~~~~~~iv~~~ 146 (302)
T PRK14654 78 IGFLDDFLSVARKDSTGLKTYQKALLQTLAAFIMLLLIRP-ET--------NVDFFG--FTIEMGKWYYLFALLVIVGSS 146 (302)
T ss_pred HHHHhccHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHhh-cc--------cccccc--ccccccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999876433211 11 122211 123566788899999999999
Q ss_pred hhhhcccCCCchhhHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhhcCccCCccccCchhHHHHHHHHHHHHHhh
Q 010720 341 NGVNLTDGLDGLAGGTAALAFIGMSIAVLPICSELSIFGASMAGACVGFLLHNRYRASVFMGDTGSLALGGALASMAACT 420 (503)
Q Consensus 341 NAvNl~DGlDGLA~G~siI~~~~L~i~~~~~~~~l~i~~~alaGAllGFL~fN~~PAKIFMGDtGSl~LG~~LA~iaI~~ 420 (503)
||+|++||+||||+|++++....+.. +..++.+....+++++|||+|||+||+||||||||||||+++|+++|++++..
T Consensus 147 NavNl~DGlDGLa~g~~~~~~~~~~~-~~~~~~~~~~~~~~l~gallGFL~~N~~PAkIFMGDtGSl~LG~~la~~~i~~ 225 (302)
T PRK14654 147 NAMNLTDGLDGLAGWIYVSGSIPYWF-FLKERGVSEDILLILGAGVLAFLVFNSKPAKIFMGDTGSITLGGVLGTVSVLT 225 (302)
T ss_pred HHhHHhhccchHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHHhhcCChhheeccchhhHHHHHHHHHHHHHH
Confidence 99999999999999987755433322 22234444556889999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhheeeecCCCCCCCCCCChhhHHHhhcCCChhHHHHHHHHHHHHHHHHHHH
Q 010720 421 GMFFPLFVSSGIFVVEASSVIMQVLYFKITKHLLGGGRRLFRMAPFHHHLELCGLKEPMIVAGAYVISSVLALFAGY 497 (503)
Q Consensus 421 ~~~~~llil~gifiie~lsvIiQV~~fK~~rR~~g~GkriF~~~pLHH~l~~~G~se~~iV~~~~~i~~llall~i~ 497 (503)
+.|+.+++++++|+.|+++|++||.+||.+ |||+|+|+|+|||+|++||+|+|+|.++|+++.+++++++.
T Consensus 226 ~~~~~~~i~~~~~v~e~lsviiQv~~~~~~------~rrif~~~p~Hhh~e~~Gw~e~~iv~~f~~i~~~~~~~~~~ 296 (302)
T PRK14654 226 KTEFYLVLFFLIPVIETLSVILQVGSFKIF------KRRIFRMSPLHHHFELIGWSEEKIVAVFTVFNLISSLVVLE 296 (302)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CceeeecCccHHHHHHcCCCcceehHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999975 58899999999999999999999999999999999998864
No 3
>TIGR00445 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase. Involved in peptidoglycan biosynthesis, the enzyme catalyzes the first of the lipid cycle reactions. Also known as Muramoyl-Pentapeptide Transferase (murX).
Probab=100.00 E-value=3.6e-59 Score=478.28 Aligned_cols=298 Identities=41% Similarity=0.596 Sum_probs=241.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcCCCCCCCCCCCcccccchhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHhhhh
Q 010720 189 CAGYICVPLLKSLKIRQIIRKEGPARHSRKGRTPTMGGLFFVPIGIAVTIATVGFSSLQVSGASAATLAIALIGLIDDVI 268 (503)
Q Consensus 189 ~l~~l~Ip~L~~l~~~~~ir~d~p~r~~hk~~tPtmGGI~ii~~~li~~~l~~~~~~~~i~~ll~~tl~~~lIG~lDD~~ 268 (503)
++++.++++++|.+..+.+|+|+++||.||++||++||+++++..++...++....+.+.+.++.+++.++++|++||+.
T Consensus 3 ~~~p~~i~~~~r~~~~~~~~~~~~~~h~~~~~tP~~GGiai~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~~DD~~ 82 (321)
T TIGR00445 3 LLGPKVIPMLKKLKAGQVIRSDGPKSHLKKKGTPTMGGIMIVFAIIVSTVLWAQLGNPYVLLVLFVLLGYGFIGFVDDYR 82 (321)
T ss_pred EeHHHHHHHHHHhCCCCCcccccchhccCCCCCCCcChHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhHH
Confidence 46889999999999988888888999999999999999998864333222222222333444455566678999999999
Q ss_pred hhhhcCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCCccceeeecccccccchhhhHHHHHHHHHHHHHhhhhhcccC
Q 010720 269 CLVKNHSSGLSAWSRLILEVAVGTWFSFWLDATSIPSPYGMKMLVPLPAPLGLLFLGKFYLLLTSFTFVSMGNGVNLTDG 348 (503)
Q Consensus 269 ~l~~k~~~GLs~~~KLllQi~aall~~l~~~~~~i~~~~~~~~~ip~~~~~g~i~lg~l~~~lti~~iv~~sNAvNl~DG 348 (503)
|.++|+++|++++.|+++|+++++++..+....... .....|+.. ...+++++++++++++++++++||+|++||
T Consensus 83 ~~~~~~~~gl~~~~rl~~q~~~a~~~~~~~~~~~~~----~~~~~p~~~-~~~~~lg~~~~~~~~~~iv~~~Na~N~~DG 157 (321)
T TIGR00445 83 KIKRKSNKGLTAKQKLFGQIIIALIFCTWLYYYGPD----TFIYIPFIK-DFMFDLGLFYILLAYFVLVGTSNAVNLTDG 157 (321)
T ss_pred HHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCC----ceEeccccc-cccccccHHHHHHHHHHHHHHhhhhhhhcc
Confidence 999999999999999999999998765332111100 001122211 112456788899999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHhc-ccC---------------hHHHHHHHHHHHHHHHHhhcCccCCccccCchhHHHHHHH
Q 010720 349 LDGLAGGTAALAFIGMSIAVL-PIC---------------SELSIFGASMAGACVGFLLHNRYRASVFMGDTGSLALGGA 412 (503)
Q Consensus 349 lDGLA~G~siI~~~~L~i~~~-~~~---------------~~l~i~~~alaGAllGFL~fN~~PAKIFMGDtGSl~LG~~ 412 (503)
+||||+|++++++.++++... .++ .+...++++++|||+|||+||+|||||||||+||+++|++
T Consensus 158 lDGLa~g~~~i~~~~l~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~l~ga~lgFL~fN~~pAkIFMGD~GS~~LG~~ 237 (321)
T TIGR00445 158 LDGLAIGPSAIAFGALAILAWATGNANFAKYLHIPYLKDSGELVIFCTALVGASLGFLWFNAYPAKVFMGDTGSLALGGA 237 (321)
T ss_pred cchHhHHHHHHHHHHHHHHHHHccchhHhhhhcccccCcchHHHHHHHHHHHHHHHHHHhhCChhheeccchHHHHHHHH
Confidence 999999999999988876542 222 2557788999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhheeeecCCCCCCCCCCChhhHHHhhcCCChhHHHHHHHHHHHHHH
Q 010720 413 LASMAACTGMFFPLFVSSGIFVVEASSVIMQVLYFKITKHLLGGGRRLFRMAPFHHHLELCGLKEPMIVAGAYVISSVLA 492 (503)
Q Consensus 413 LA~iaI~~~~~~~llil~gifiie~lsvIiQV~~fK~~rR~~g~GkriF~~~pLHH~l~~~G~se~~iV~~~~~i~~lla 492 (503)
+|++++..+.++..++++++|++|++++++|+.+.+. +||++|+++|+|||+++.||+|+|++.++|.++++++
T Consensus 238 la~~~i~~~~~~~~l~~~~~~i~D~~~vi~~v~~r~~------~g~~~f~~~~~Hh~l~~~G~s~~~v~~~~~~i~~~~~ 311 (321)
T TIGR00445 238 LGAVAILTKNEILLVIMGGVFVIETLSVILQVGSYKT------TKKRIFKMAPIHHHFELKGWSEPRVVVRFWIISLLLA 311 (321)
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCCCCCCchHHHHHHcCCChhHHHHHHHHHHHHHH
Confidence 9999999888888888899999999999999874443 4799999999999999999999999999999999999
Q ss_pred HHHHH
Q 010720 493 LFAGY 497 (503)
Q Consensus 493 ll~i~ 497 (503)
+++++
T Consensus 312 ~~~~~ 316 (321)
T TIGR00445 312 LVALA 316 (321)
T ss_pred HHHHH
Confidence 98876
No 4
>PRK00108 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional
Probab=100.00 E-value=2e-58 Score=476.67 Aligned_cols=314 Identities=39% Similarity=0.610 Sum_probs=250.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCCCCCCCcccccchhHHHHHHHHHHH-hccchhhHHHHH
Q 010720 174 FYLTRPFFISAVLVSCAGYICVPLLKSLKIRQIIRKEGPARHSRKGRTPTMGGLFFVPIGIAVTIAT-VGFSSLQVSGAS 252 (503)
Q Consensus 174 ~~~~~~~~ls~lis~~l~~l~Ip~L~~l~~~~~ir~d~p~r~~hk~~tPtmGGI~ii~~~li~~~l~-~~~~~~~i~~ll 252 (503)
+++..+++++++++.++++.++++.+|.+..+..++++|+.|.||++||++||++++. ++.++..+ ....+.+.+.++
T Consensus 9 ~~~~~~~~~af~is~~~~p~~i~~~~~~~~~~~~~~~~p~~h~h~~~tP~~GGi~i~~-~~~~~~~~~~~~~~~~~~~~l 87 (344)
T PRK00108 9 FRALLALLTALLISLILGPRFIRFLRKLKFGQPIREDGPQSHLKKAGTPTMGGILILL-AIVISTLLWADLSNPYVWLVL 87 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccccCCCCCCCcccHHHHH-HHHHHHHHHHhccchHHHHHH
Confidence 5677888889999999999999999888765555567776667899999999999875 34333332 222233444445
Q ss_pred HHHHHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCCccceeeecccccccchhh-hHHHHH
Q 010720 253 AATLAIALIGLIDDVICLVKNHSSGLSAWSRLILEVAVGTWFSFWLDATSIPSPYGMKMLVPLPAPLGLLFLG-KFYLLL 331 (503)
Q Consensus 253 ~~tl~~~lIG~lDD~~~l~~k~~~GLs~~~KLllQi~aall~~l~~~~~~i~~~~~~~~~ip~~~~~g~i~lg-~l~~~l 331 (503)
.+++.++++|++||+.|+++|+++|++++.|+++|+++++++..+.....+.. .....|+.. ...++++ ++++++
T Consensus 88 ~~~~~~~~vG~~DD~~~~~~~~~~~l~~~~kl~~q~~aa~~~~~~~~~~g~~~---~~~~~p~~~-~~~i~lg~~~~~~~ 163 (344)
T PRK00108 88 LVTLGFGLIGFLDDYLKVVKKNNLGLSARQKLLLQILIALIFALLLYLLGSTS---TSLTIPFFK-DLSLDLGVILYIPF 163 (344)
T ss_pred HHHHHHHHHHhHHhhHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhcccCC---ceEEecCcc-ccccccchHHHHHH
Confidence 55666789999999999999999999999999999999987655421000100 001122211 1123556 678999
Q ss_pred HHHHHHHHhhhhhcccCCCchhhHHHHHHHHHHHHHhc-cc---------------ChHHHHHHHHHHHHHHHHhhcCcc
Q 010720 332 TSFTFVSMGNGVNLTDGLDGLAGGTAALAFIGMSIAVL-PI---------------CSELSIFGASMAGACVGFLLHNRY 395 (503)
Q Consensus 332 ti~~iv~~sNAvNl~DGlDGLA~G~siI~~~~L~i~~~-~~---------------~~~l~i~~~alaGAllGFL~fN~~ 395 (503)
+++++++++||+|++||+||||+|++++++.++++... .+ +.+...++++++|||+|||+||+|
T Consensus 164 t~~~iv~~~Na~N~iDGiDGLa~g~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gallGFL~~N~~ 243 (344)
T PRK00108 164 AYFVIVGTSNAVNLTDGLDGLAIGPSVIVFAALGIIAYLQGNAVFANYLHIPYIPGAGELAIFCAALVGACLGFLWFNAY 243 (344)
T ss_pred HHHHHHHHhhhhhhccCchhHHHHHHHHHHHHHHHHHHHcCchhhhhhhcccccCCchHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999988876532 22 336778899999999999999999
Q ss_pred CCccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhheeeecCCCCCCCCCCChhhHHHhhcCC
Q 010720 396 RASVFMGDTGSLALGGALASMAACTGMFFPLFVSSGIFVVEASSVIMQVLYFKITKHLLGGGRRLFRMAPFHHHLELCGL 475 (503)
Q Consensus 396 PAKIFMGDtGSl~LG~~LA~iaI~~~~~~~llil~gifiie~lsvIiQV~~fK~~rR~~g~GkriF~~~pLHH~l~~~G~ 475 (503)
||||||||+||+++|+++|++++..+.++..++++++|++|++++++|+.++|. +||++|+++|+|||+++.||
T Consensus 244 pAkIFMGD~GS~~LG~~la~~~i~~~~~~~~~~~~~~~l~d~~~~~l~~~~~R~------~g~~~f~~~hlHH~l~~~G~ 317 (344)
T PRK00108 244 PAQVFMGDTGSLALGGALAAIAVLLRQELLLLIIGGVFVIETLSVILQVGSFKL------TGKRIFRMAPIHHHFELKGW 317 (344)
T ss_pred cceEEeechHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCCCCCCCHHHHHHHcCC
Confidence 999999999999999999999998877777778889999999999999877665 26899999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH
Q 010720 476 KEPMIVAGAYVISSVLALFAGYV 498 (503)
Q Consensus 476 se~~iV~~~~~i~~llall~i~~ 498 (503)
+|+|+|.++|.++.+++++++.+
T Consensus 318 s~~~vv~~~~~i~~~~~~~~~~~ 340 (344)
T PRK00108 318 SETKVVVRFWIITLILALIGLAT 340 (344)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888653
No 5
>COG0472 Rfe UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.4e-56 Score=456.94 Aligned_cols=295 Identities=36% Similarity=0.514 Sum_probs=232.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCCCCCCCcccccchhHHHHHHHHHHHhcc-chhhHHHHHHHHHH
Q 010720 179 PFFISAVLVSCAGYICVPLLKSLKIRQIIRKEGPARHSRKGRTPTMGGLFFVPIGIAVTIATVGF-SSLQVSGASAATLA 257 (503)
Q Consensus 179 ~~~ls~lis~~l~~l~Ip~L~~l~~~~~ir~d~p~r~~hk~~tPtmGGI~ii~~~li~~~l~~~~-~~~~i~~ll~~tl~ 257 (503)
.+++++++|+++++.+++++++.+..| +++|+| |.||++||||||++++...++..++.... .+.+.+..+.++..
T Consensus 8 ~~i~a~~~s~~~~p~~~~~~~~~~~~~-~~~~~~--k~H~~~tP~mGGl~I~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 84 (319)
T COG0472 8 ALIISFVISLILTPILIKFLRKLGLGD-IPEDGP--KSHKKGTPTMGGLAILLSILLASLLAANLLTNPYVWLVLLGLLG 84 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccc-CCCccc--cccCCCCCCcchHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 778899999999999999999998877 555654 55677999999999986433333333332 44455667778888
Q ss_pred HHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHHHH-HHHHhh--cCCCCCCCccceeeecccccccchhh-hHHHHHHH
Q 010720 258 IALIGLIDDVICLVKNHSSGLSAWSRLILEVAVGTW-FSFWLD--ATSIPSPYGMKMLVPLPAPLGLLFLG-KFYLLLTS 333 (503)
Q Consensus 258 ~~lIG~lDD~~~l~~k~~~GLs~~~KLllQi~aall-~~l~~~--~~~i~~~~~~~~~ip~~~~~g~i~lg-~l~~~lti 333 (503)
++++|++||+.| +++|.|.+.|...++. +..... ......|+ ..|+ ....+ ++++++++
T Consensus 85 ~~~iG~lDD~~~--------l~~~~r~l~~~~~a~~~~~~~~~~~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~ 147 (319)
T COG0472 85 FGLIGFLDDRLK--------LSPKIRGLIQKLKALLLIIALGELPIKFLDIPL----GIPF-----FKLPGPLLFILFAV 147 (319)
T ss_pred HHHHHHHHhHHH--------hhHHhhhHHHHHHHHHHHHHHHHHHHHhccCcc----cccH-----HHHHHHHHHHHHHH
Confidence 999999999996 5666666666666552 111111 01111110 1111 11233 78899999
Q ss_pred HHHHHHhhhhhcccCCCchhhHHHHHHHHHHHHHh-cccChHHHHHHHHHHHHHHHHhhcCccCCccccCchhHHHHHHH
Q 010720 334 FTFVSMGNGVNLTDGLDGLAGGTAALAFIGMSIAV-LPICSELSIFGASMAGACVGFLLHNRYRASVFMGDTGSLALGGA 412 (503)
Q Consensus 334 ~~iv~~sNAvNl~DGlDGLA~G~siI~~~~L~i~~-~~~~~~l~i~~~alaGAllGFL~fN~~PAKIFMGDtGSl~LG~~ 412 (503)
+++++.+||+|++||+||||+|.+++++.++++.. ..++.+.+++|++++|||+||||||+||||||||||||+++|++
T Consensus 148 ~~ivg~sNAvNl~DGlDGLa~g~~~i~~~~~~~i~~~~~~~~~~~~~~al~ga~LGFL~~N~~PAkIFmGDtGSl~LG~~ 227 (319)
T COG0472 148 FAIVGASNAVNLTDGLDGLAAGLSAIALLALALIALLQGLGELALICAALAGACLGFLWFNFYPAKIFMGDTGSLALGAA 227 (319)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcCChhhhcCCchhhHHHHHH
Confidence 99999999999999999999999999999998754 34568899999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhHHHHHHHH--HHHHHHHHHHHHHHhhheeeecCCCCCCCCCCChhhHHHhhcC---CChhHHHHHHHHH
Q 010720 413 LASMAACTGMFFPLFVSSG--IFVVEASSVIMQVLYFKITKHLLGGGRRLFRMAPFHHHLELCG---LKEPMIVAGAYVI 487 (503)
Q Consensus 413 LA~iaI~~~~~~~llil~g--ifiie~lsvIiQV~~fK~~rR~~g~GkriF~~~pLHH~l~~~G---~se~~iV~~~~~i 487 (503)
+|+++++.+.|.++.++.+ +|++|++++++|+.++|. +++ +.+ ++.|+|||+++.| |+|+|+|.++|++
T Consensus 228 la~iail~~~~~~l~~~~~~~v~v~et~~vil~r~~~~~-~~~----~~~-~~~~~HH~~~~~g~~~~~e~~vv~~~w~i 301 (319)
T COG0472 228 LAAIALLLKQEILLAIIGPLGVPVIETLSVILRRLSFKL-KPI----RLP-DMAHLHHHLELKGLSEWSERQVVLRFWLI 301 (319)
T ss_pred HHHHHHHHhCchhhhhhhhhhHHHHHHHHHHHHHHHhcc-CCC----CCc-CCCCchHHHHHcCCccCccceehHHHHHH
Confidence 9999999999888767777 999999999999887765 221 112 7889999999999 9999999999999
Q ss_pred HHHHHHHHHHHH
Q 010720 488 SSVLALFAGYVG 499 (503)
Q Consensus 488 ~~llall~i~~g 499 (503)
+++++++++...
T Consensus 302 ~~i~~~i~l~~~ 313 (319)
T COG0472 302 SLILALIALLLL 313 (319)
T ss_pred HHHHHHHHHHHH
Confidence 999999988763
No 6
>cd06852 GT_MraY Phospho-N-acetylmuramoyl-pentapeptide-transferase (mraY) is an enzyme responsible for the formation of the first lipid intermediate in the synthesis of bacterial cell wall peptidoglycan. It catalyzes the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. It is an integral membrane protein with possibly ten transmembrane domains.
Probab=100.00 E-value=7e-52 Score=417.23 Aligned_cols=276 Identities=41% Similarity=0.642 Sum_probs=219.6
Q ss_pred CCCCCCCCCCcccccchhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHH
Q 010720 212 PARHSRKGRTPTMGGLFFVPIGIAVTIATVGFSSLQVSGASAATLAIALIGLIDDVICLVKNHSSGLSAWSRLILEVAVG 291 (503)
Q Consensus 212 p~r~~hk~~tPtmGGI~ii~~~li~~~l~~~~~~~~i~~ll~~tl~~~lIG~lDD~~~l~~k~~~GLs~~~KLllQi~aa 291 (503)
+.+|.||++||++||+++++..++...++....+.+...++.+.+.++++|++||+.++++|+++|++++.|+++|++++
T Consensus 2 ~~~~~h~~~~P~~GGiai~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vG~~DD~~~l~~~~~~~l~~~~rL~~q~~~a 81 (280)
T cd06852 2 PKSHLKKAGTPTMGGILFILAILISTLLWADLDSPEVLLLLLLTLGFGLIGFLDDYLKVVKKRNLGLSARQKLLLQFLIA 81 (280)
T ss_pred CcccCCCCCCCCccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhHHHhhHHHhccCCCCCCHHHHHHHHHHHH
Confidence 45788999999999999885433322333222233344444555667899999999999999999999999999999998
Q ss_pred HHHHHHhhcCCCCCCCccceeeecccccccchhhhHHHHHHHHHHHHHhhhhhcccCCCchhhHHHHHHHHHHHHHhc-c
Q 010720 292 TWFSFWLDATSIPSPYGMKMLVPLPAPLGLLFLGKFYLLLTSFTFVSMGNGVNLTDGLDGLAGGTAALAFIGMSIAVL-P 370 (503)
Q Consensus 292 ll~~l~~~~~~i~~~~~~~~~ip~~~~~g~i~lg~l~~~lti~~iv~~sNAvNl~DGlDGLA~G~siI~~~~L~i~~~-~ 370 (503)
.++..+......... . ...|++ ..+..++++++++++++++++++||+|++||+||+|+|++++++.++++... .
T Consensus 82 ~~~~~~~~~~~~~~~-~--~~~~~~-~~~~~~l~~~~~~l~v~~iv~~~Na~N~~DGiDGLa~g~~~i~~~~l~~~~~~~ 157 (280)
T cd06852 82 IVFALLLYYFNGSGT-L--ITLPFF-KNGLIDLGILYIPFAIFVIVGSSNAVNLTDGLDGLAAGVSIIVALALAIIAYLA 157 (280)
T ss_pred HHHHHHHHHhccccc-c--eecccc-ccccccchHHHHHHHHHHHHHHhhHhhhccCchhHHHHHHHHHHHHHHHHHHHh
Confidence 877655421111000 0 001111 1234567888999999999999999999999999999999999988876543 3
Q ss_pred cChH-HHHHHHHHHHHHHHHhhcCccCCccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhe
Q 010720 371 ICSE-LSIFGASMAGACVGFLLHNRYRASVFMGDTGSLALGGALASMAACTGMFFPLFVSSGIFVVEASSVIMQVLYFKI 449 (503)
Q Consensus 371 ~~~~-l~i~~~alaGAllGFL~fN~~PAKIFMGDtGSl~LG~~LA~iaI~~~~~~~llil~gifiie~lsvIiQV~~fK~ 449 (503)
++.+ ...++++++||++|||+||+||||+||||+||+++|+++|++++..+.++..+++.++|++|++.+++|+.+.|.
T Consensus 158 ~~~~~~~~~~~~l~ga~lgFL~~N~~pAkIFmGD~GS~~lG~~la~~~i~~~~~~~~~i~~~~~l~d~~~~~~~~~~~r~ 237 (280)
T cd06852 158 GNAVFLAVFCAALVGACLGFLWFNAYPAKVFMGDTGSLALGGALAALAILTKQELLLLIIGGVFVIEALSVILQVGSFKL 237 (280)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHhcCcceEEeechHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556 777888999999999999999999999999999999999999998877777778888999999999997653333
Q ss_pred eeecCCCCCCCCCCChhhHHHhhcCCChhHHHHHHHHHHHHHHHHHHH
Q 010720 450 TKHLLGGGRRLFRMAPFHHHLELCGLKEPMIVAGAYVISSVLALFAGY 497 (503)
Q Consensus 450 ~rR~~g~GkriF~~~pLHH~l~~~G~se~~iV~~~~~i~~llall~i~ 497 (503)
+ ||++|+++|+||++++.|++|+|++..+|.+++++++++++
T Consensus 238 ----~--g~~~f~~~h~hh~l~~~g~s~~~v~~~~~~i~~~~~~~~~~ 279 (280)
T cd06852 238 ----T--GKRIFKMAPLHHHFELKGWSETKVVVRFWIISLILALIGLL 279 (280)
T ss_pred ----c--CCCCCCCCCHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHh
Confidence 2 68899999999999999999999999999999999988765
No 7
>TIGR02380 ECA_wecA undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. Members of this family are the WecA enzyme of enterobacterial common antigen biosynthesis, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. This family represents one narrow clade, and closely related sequences outside this clade may represent enzymes that catalyze the same specific reaction, but in the context of different pathways. A His-rich motif in a cytosolic loop of this integral membrane protein, shown critical to enzymatic activity for WecA (see ref ) is variously present or absent in the clade that includes Bacillus subtilis TagO teichoic acid biosynthesis enzyme, which may catalyze the same reaction as WecA.
Probab=100.00 E-value=1.3e-50 Score=418.71 Aligned_cols=287 Identities=20% Similarity=0.255 Sum_probs=214.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCCCCCCCcccccchhHHHHHHHHHHHhccchhhHHHHHHHHHHHHH
Q 010720 181 FISAVLVSCAGYICVPLLKSLKIRQIIRKEGPARHSRKGRTPTMGGLFFVPIGIAVTIATVGFSSLQVSGASAATLAIAL 260 (503)
Q Consensus 181 ~ls~lis~~l~~l~Ip~L~~l~~~~~ir~d~p~r~~hk~~tPtmGGI~ii~~~li~~~l~~~~~~~~i~~ll~~tl~~~l 260 (503)
+++++++.+ .+|.+++...+...-|.+++||.|+++||++||++++.. +.++.........+...++.+...+++
T Consensus 5 ~~~~~~s~~----~~~~~~~~a~r~~lvD~P~~Rk~H~~~~P~~GGiai~~~-~~~~~~~~~~~~~~~~~~l~~~~li~~ 79 (346)
T TIGR02380 5 IVIFLSSFA----FLFLMRKVAKIVGLVDKPNARKRHQGFIPLVGGISIFLT-LCIYLFLHPALIPHYSLYLFCATILVV 79 (346)
T ss_pred HHHHHHHHH----HHHHHHHHHHHcCCCcCCCCCCCCCCCcCCcCcHHHHHH-HHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 344444444 455555554443343444579999999999999998753 443333322122223333444456679
Q ss_pred HHHHhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCCccceeeecccccccchhhhHHHHHHHHHHHHHh
Q 010720 261 IGLIDDVICLVKNHSSGLSAWSRLILEVAVGTWFSFWLDATSIPSPYGMKMLVPLPAPLGLLFLGKFYLLLTSFTFVSMG 340 (503)
Q Consensus 261 IG~lDD~~~l~~k~~~GLs~~~KLllQi~aall~~l~~~~~~i~~~~~~~~~ip~~~~~g~i~lg~l~~~lti~~iv~~s 340 (503)
+|++||++ ++|++.|+++|++++.++..+.+ ..+.. .+ .++ ..+.+++++++++++++++++++
T Consensus 80 iG~~DD~~--------~Ls~~~rl~~q~~aa~~~~~~~~-~~i~~-~~----~~~--~~~~l~l~~~~~~~t~~~iv~~~ 143 (346)
T TIGR02380 80 IGIIDDRF--------DISVKIRLAIQAAVSIVMIQFGN-IYLHS-LG----NIF--GPKELTLGLFGYIITIFAVIGAI 143 (346)
T ss_pred HHHHhhcc--------CCCHHHHHHHHHHHHHHHHHHcc-cchhh-cc----ccc--ccccccchHHHHHHHHHHHHHHH
Confidence 99999998 79999999999999977654432 11111 00 011 11234567888999999999999
Q ss_pred hhhhcccCCCchhhHHHHHHHHHHHHHhc-ccChHHHHHHHHHHHHHHHHhhcCcc-----CCccccCchhHHHHHHHHH
Q 010720 341 NGVNLTDGLDGLAGGTAALAFIGMSIAVL-PICSELSIFGASMAGACVGFLLHNRY-----RASVFMGDTGSLALGGALA 414 (503)
Q Consensus 341 NAvNl~DGlDGLA~G~siI~~~~L~i~~~-~~~~~l~i~~~alaGAllGFL~fN~~-----PAKIFMGDtGSl~LG~~LA 414 (503)
||+||+||+||||+|++++++.++++... .++.+...++++++|+++|||+||+| ||||||||+||+++|+++|
T Consensus 144 Na~N~iDGiDGLa~g~~~i~~~~l~~~~~~~~~~~~~~~~~~l~ga~lgFL~~N~~~~~~~pAkIFMGD~GS~~LGf~la 223 (346)
T TIGR02380 144 NAFNMIDGIDGLLGGLSCVSFAALGYLFWLDGQVELAYWCFALIVAILPYLMLNLGIPLGRKFKVFMGDAGSTFIGFTVI 223 (346)
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEeccchhhHHHHHHHH
Confidence 99999999999999999999988877543 45567777888999999999999996 8999999999999999999
Q ss_pred HHHHhhhh----h----HHHHHHHHHHHHHHHHHHHHHHhhheeeecCCCCCCCCCCC--hhhHHHhhcCCChhHHHHHH
Q 010720 415 SMAACTGM----F----FPLFVSSGIFVVEASSVIMQVLYFKITKHLLGGGRRLFRMA--PFHHHLELCGLKEPMIVAGA 484 (503)
Q Consensus 415 ~iaI~~~~----~----~~llil~gifiie~lsvIiQV~~fK~~rR~~g~GkriF~~~--pLHH~l~~~G~se~~iV~~~ 484 (503)
+.++.... . +..+++.++|++|++.+++ ||.. +||++|++| |+||++++.|++|+|++..+
T Consensus 224 ~~~i~~~~~~~~~~~~~~~~l~~l~~Pl~D~~~~i~--------rR~~-~g~~~f~adr~Hlhh~L~~~G~s~~~~~~~~ 294 (346)
T TIGR02380 224 WLLLLATQGESSPSMRPVTALWLIALPLMDMAAIML--------RRIR-KGDSPFKPDRQHLHHILQRLGLTSRQSLFVI 294 (346)
T ss_pred HHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHH--------HHHH-CCCCCCCCCCccHHHHHHHcCCCHHHHHHHH
Confidence 99887522 1 1223567789999999998 4544 689999986 89999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 010720 485 YVISSVLALFAGY 497 (503)
Q Consensus 485 ~~i~~llall~i~ 497 (503)
|.++++++++++.
T Consensus 295 ~~~~~~~~~~~~~ 307 (346)
T TIGR02380 295 CGFAALFAAIGIW 307 (346)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988888765
No 8
>PRK15119 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase; Provisional
Probab=100.00 E-value=1.4e-49 Score=413.65 Aligned_cols=288 Identities=22% Similarity=0.290 Sum_probs=213.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCCCCCCCcccccchhHHHHHHHHHHHhccchhhHHHHHHHHHHHH
Q 010720 180 FFISAVLVSCAGYICVPLLKSLKIRQIIRKEGPARHSRKGRTPTMGGLFFVPIGIAVTIATVGFSSLQVSGASAATLAIA 259 (503)
Q Consensus 180 ~~ls~lis~~l~~l~Ip~L~~l~~~~~ir~d~p~r~~hk~~tPtmGGI~ii~~~li~~~l~~~~~~~~i~~ll~~tl~~~ 259 (503)
+++++++|+++ +|.+++...+....|.+++||.|+++||++||++++. ++.++..+......+...++.+...+.
T Consensus 10 ~~~~~~~s~~l----~~~~~~~a~r~gl~D~P~~Rk~H~~~~P~~GGiai~~-~~~~~~~~~~~~~~~~~~~l~~~~ll~ 84 (365)
T PRK15119 10 LISIFLFSTLF----LFFARKVAKKIGLVDKPNYRKRHQGLIPLVGGISVYA-GICFTFGITDYYIPHASLYLACAGVLV 84 (365)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHCCCCCCCCCCcCCCCCCCCcCcHHHHH-HHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 34455555444 5555555544434344447899999999999999875 344444332211222233333334566
Q ss_pred HHHHHhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCCccceeeecccccccchhhhHHHHHHHHHHHHH
Q 010720 260 LIGLIDDVICLVKNHSSGLSAWSRLILEVAVGTWFSFWLDATSIPSPYGMKMLVPLPAPLGLLFLGKFYLLLTSFTFVSM 339 (503)
Q Consensus 260 lIG~lDD~~~l~~k~~~GLs~~~KLllQi~aall~~l~~~~~~i~~~~~~~~~ip~~~~~g~i~lg~l~~~lti~~iv~~ 339 (503)
++|++||++ +++++.|+++|++++.++..+.+. .+... + .++ ....+.++++++++++++++++
T Consensus 85 ~iG~~DD~~--------~l~~~~RL~~Q~~aa~~l~~~~g~-~i~~~-~----~~~--~~~~i~~~~~~~~~tv~~iv~~ 148 (365)
T PRK15119 85 FVGALDDRF--------DISVKIRATIQAAVGIVMMVFAGL-YLSSL-G----YIF--GPWEMVLGPFGYFLTLFAVWAA 148 (365)
T ss_pred HHHhHhccc--------CCCHHHHHHHHHHHHHHHHHHhCc-chhcc-c----ccc--ccccccchHHHHHHHHHHHHHH
Confidence 899999998 799999999999998776544321 11110 0 011 0112345678889999999999
Q ss_pred hhhhhcccCCCchhhHHHHHHHHHHHHHh-cccChHHHHHHHHHHHHHHHHhhcCc----cCCccccCchhHHHHHHHHH
Q 010720 340 GNGVNLTDGLDGLAGGTAALAFIGMSIAV-LPICSELSIFGASMAGACVGFLLHNR----YRASVFMGDTGSLALGGALA 414 (503)
Q Consensus 340 sNAvNl~DGlDGLA~G~siI~~~~L~i~~-~~~~~~l~i~~~alaGAllGFL~fN~----~PAKIFMGDtGSl~LG~~LA 414 (503)
+||+||+||+||||+|++++++.++++.. ..++.+...++++++|+++|||+||+ |||||||||+||+++|+.+|
T Consensus 149 iNA~N~iDGiDGLa~g~~~i~~~~l~~~~~~~~~~~~~~~~~~l~ga~lgFL~fN~~~~~~pAkIFMGD~GS~~LGf~la 228 (365)
T PRK15119 149 INAFNMVDGIDGLLGGLSCVSFAAMGIILWFDGQTSLALWCFAMIAAILPYILLNLGILGRRYKVFMGDAGSTLIGFTVI 228 (365)
T ss_pred HhHHHhhcccchHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEeccchhHHHHHHHHH
Confidence 99999999999999999999999888764 34556677788899999999999999 58999999999999999999
Q ss_pred HHHHhhhh-------hHHHHHHHHHHHHHHHHHHHHHHhhheeeecCCCCCCCCCCC--hhhHHHhhcCCChhHHHHHHH
Q 010720 415 SMAACTGM-------FFPLFVSSGIFVVEASSVIMQVLYFKITKHLLGGGRRLFRMA--PFHHHLELCGLKEPMIVAGAY 485 (503)
Q Consensus 415 ~iaI~~~~-------~~~llil~gifiie~lsvIiQV~~fK~~rR~~g~GkriF~~~--pLHH~l~~~G~se~~iV~~~~ 485 (503)
++++.... .+..+++.++|++|++.+++ ||.. +||+||++| |+||++.+.|++|+|++..+|
T Consensus 229 ~~~i~~~~~~~~~~~~~~~l~~l~~Pl~D~~~~~~--------rR~~-~g~~~f~adr~Hlhh~L~~~G~s~~~~~~~i~ 299 (365)
T PRK15119 229 WILLETTQGKTHPISPVTALWIIAIPLMDMVAIMY--------RRLR-KGMSPFSPDRQHIHHLIMRAGFTSRQAFVLIT 299 (365)
T ss_pred HHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHH--------HHHh-CCCCCCCCCCCcHHHHHHHcCCCHHHHHHHHH
Confidence 99886521 11234567789999999998 5655 689999986 999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 010720 486 VISSVLALFAGY 497 (503)
Q Consensus 486 ~i~~llall~i~ 497 (503)
.++++++++++.
T Consensus 300 ~~~~~~~~~~~~ 311 (365)
T PRK15119 300 LAAALLASIGVL 311 (365)
T ss_pred HHHHHHHHHHHH
Confidence 999988887754
No 9
>cd06854 GT_WbpL_WbcO_like The members of this subfamily catalyze the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate (Und-P) molecule and N-acetylhexosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylhexosamine precursor. The WbcO/WbpL substrate specificity has not yet been determined, but the structure of their biosynthetic end products implies that UDP-N-acetyl-D-fucosamine (UDP-FucNAc) and/or UDPN-acetyl-D-quinosamine (UDP-QuiNAc) are used. The subgroup of bacterial UDP-HexNAc:polyprenol-P HexNAc-1-P transferases includes the WbcO protein from Yersinia enterocolitica and the WbpL protein from Pseudomonas aeruginosa. These transferases initiate LPS O-antigen biosynthesis. Similar to other GlcNAc/MurNAc-1-P transferase family members, WbpL is a highly hydrophobic protein possessing 11 predicted transmembrane segments.
Probab=100.00 E-value=6.9e-49 Score=390.04 Aligned_cols=238 Identities=26% Similarity=0.366 Sum_probs=188.4
Q ss_pred CCCCCCCCCCcccccchhHHHHHHHHHHHhcc---chhhHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHH
Q 010720 212 PARHSRKGRTPTMGGLFFVPIGIAVTIATVGF---SSLQVSGASAATLAIALIGLIDDVICLVKNHSSGLSAWSRLILEV 288 (503)
Q Consensus 212 p~r~~hk~~tPtmGGI~ii~~~li~~~l~~~~---~~~~i~~ll~~tl~~~lIG~lDD~~~l~~k~~~GLs~~~KLllQi 288 (503)
++||.||++||++||+++++..++...++... .+.+...++.+.+.++++|++||+. +++++.|+++|+
T Consensus 6 ~~Rk~H~~~~P~~GGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~DD~~--------~l~~~~kl~~q~ 77 (253)
T cd06854 6 NERSSHTKPTPRGGGIAFVLAFLLALLLAAAAGPLNDLSYLLLLIGLLLLAAVGFIDDLR--------SLSPKIRLLVQL 77 (253)
T ss_pred CCCCCCCCCcCCcChHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHhhcc--------CCCHHHHHHHHH
Confidence 47999999999999999886433322222211 1223444556667788999999998 799999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCccceeeecccccccchhhhHHHHHHHHHHHHHhhhhhcccCCCchhhHHHHHHHHHHHHHh
Q 010720 289 AVGTWFSFWLDATSIPSPYGMKMLVPLPAPLGLLFLGKFYLLLTSFTFVSMGNGVNLTDGLDGLAGGTAALAFIGMSIAV 368 (503)
Q Consensus 289 ~aall~~l~~~~~~i~~~~~~~~~ip~~~~~g~i~lg~l~~~lti~~iv~~sNAvNl~DGlDGLA~G~siI~~~~L~i~~ 368 (503)
++++++....... . ... ...+.++++++++++++++.+||+|++||+||||+|++++++.++++..
T Consensus 78 ~~a~~~~~~~~~~--~-------~~~-----~~~~~~~~~~~~~~~~iv~~~Na~Nl~DGldGLa~g~~~i~~~~l~~~~ 143 (253)
T cd06854 78 LAAALALYALGPL--T-------SLL-----LNFLPPWLIALLLLLAIVWIINLYNFMDGIDGLAGGEALVVFLALALLG 143 (253)
T ss_pred HHHHHHHHHhhhH--h-------hhc-----chhhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 9887654332110 0 000 0124567889999999999999999999999999999999999888754
Q ss_pred c-ccChHHHHHHHHHHHHHHHHhhcCccCCccccCchhHHHHHHHHHHHHHhhhh---h-HHHHHHHHHHHHHHHHHHHH
Q 010720 369 L-PICSELSIFGASMAGACVGFLLHNRYRASVFMGDTGSLALGGALASMAACTGM---F-FPLFVSSGIFVVEASSVIMQ 443 (503)
Q Consensus 369 ~-~~~~~l~i~~~alaGAllGFL~fN~~PAKIFMGDtGSl~LG~~LA~iaI~~~~---~-~~llil~gifiie~lsvIiQ 443 (503)
. .++.+...++++++|+|+|||+||+||||+||||+||+++|+++|++++.... + +..++++++|++|++++++|
T Consensus 144 ~~~~~~~~~~~~~~l~ga~lgFL~~N~~pAkiFmGD~GS~~lG~~la~~~i~~~~~~~~~~~~l~~~~~p~~D~~~~i~~ 223 (253)
T cd06854 144 YLAGEPALALLALALAGALLGFLPFNWPPAKIFMGDVGSTFLGFLLAALLLLLALSGQSPWAWLLLLSPFLVDATVTLLR 223 (253)
T ss_pred HHccchHHHHHHHHHHHHHHHHHHhhCChhhcccccccHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3 35567778899999999999999999999999999999999999999998653 2 55667888999999999984
Q ss_pred HHhhheeeecCCCCCCCCCCC--hhhHHHhhcCCChhHH
Q 010720 444 VLYFKITKHLLGGGRRLFRMA--PFHHHLELCGLKEPMI 480 (503)
Q Consensus 444 V~~fK~~rR~~g~GkriF~~~--pLHH~l~~~G~se~~i 480 (503)
|.+ +||++|++| |+||++.+.|++|+|+
T Consensus 224 --------R~~-~g~~~~~~dr~Hlhh~l~~~g~s~~~v 253 (253)
T cd06854 224 --------RLL-RGENIFQAHRKHLYQRLARAGKSHRKV 253 (253)
T ss_pred --------HHH-cCCCCCCCchhhHHHHHHHcCCCCCCC
Confidence 333 689999996 8999999999999874
No 10
>cd06853 GT_WecA_like This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate molecule and N-acetylglucosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylglucosamine precursor. WecA participates in the biosynthesis of O antigen LPS in many enteric bacteria and is also involved in the biosynthesis of enterobacterial common antigen. A conserved short sequence motif and a conserved arginine at a cytosolic loop of this integral membrane protein were shown to be critical in recognition of substrate UDP-N-acetylglucosamine.
Probab=100.00 E-value=3.4e-46 Score=369.70 Aligned_cols=236 Identities=32% Similarity=0.419 Sum_probs=183.3
Q ss_pred CCCCCCCCcccccchhHHHHHHHHHHHhcc---chhhHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHH
Q 010720 214 RHSRKGRTPTMGGLFFVPIGIAVTIATVGF---SSLQVSGASAATLAIALIGLIDDVICLVKNHSSGLSAWSRLILEVAV 290 (503)
Q Consensus 214 r~~hk~~tPtmGGI~ii~~~li~~~l~~~~---~~~~i~~ll~~tl~~~lIG~lDD~~~l~~k~~~GLs~~~KLllQi~a 290 (503)
||.|+++||++||+++++..++...++... .+.+...++.+...++++|++||+. +++++.|+++|+++
T Consensus 1 Rk~H~~~~P~~GGi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~DD~~--------~l~~~~kl~~q~~~ 72 (249)
T cd06853 1 RKVHKGPIPRLGGLAIFLGFLLALLLALLFPFFLLPELLGLLAGATIIVLLGLLDDLF--------DLSPKVKLLGQILA 72 (249)
T ss_pred CCCCCCCCCCcCcHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHheehHHhcc--------CCCHHHHHHHHHHH
Confidence 678999999999999886433322222221 2233444556666788999999997 89999999999999
Q ss_pred HHHHHHHhhcCCCCCCCccceeeecccccccchhhhHHHHHHHHHHHHHhhhhhcccCCCchhhHHHHHHHHHHHHHh-c
Q 010720 291 GTWFSFWLDATSIPSPYGMKMLVPLPAPLGLLFLGKFYLLLTSFTFVSMGNGVNLTDGLDGLAGGTAALAFIGMSIAV-L 369 (503)
Q Consensus 291 all~~l~~~~~~i~~~~~~~~~ip~~~~~g~i~lg~l~~~lti~~iv~~sNAvNl~DGlDGLA~G~siI~~~~L~i~~-~ 369 (503)
++++..+... .. ....|........++++++++++++++.+||+|++||+|||++|++++++.++++.. .
T Consensus 73 a~~~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~Na~N~~DGidGLa~~~~~i~~~~l~~~~~~ 143 (249)
T cd06853 73 ALIVVFGGGV--IL-------SLLGPFGGGIILLGWLSIPLTVLWIVGIINAINLIDGLDGLAGGVALIASLALAILALL 143 (249)
T ss_pred HHHHHHhcCe--ee-------ecccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 8876543211 10 011111112345678889999999999999999999999999999999988877653 3
Q ss_pred ccChHHHHHHHHHHHHHHHHhhcCccCCccccCchhHHHHHHHHHHHHHhhhhh-------HHHHHHHHHHHHHHHHHHH
Q 010720 370 PICSELSIFGASMAGACVGFLLHNRYRASVFMGDTGSLALGGALASMAACTGMF-------FPLFVSSGIFVVEASSVIM 442 (503)
Q Consensus 370 ~~~~~l~i~~~alaGAllGFL~fN~~PAKIFMGDtGSl~LG~~LA~iaI~~~~~-------~~llil~gifiie~lsvIi 442 (503)
.++.+...++++++|+++|||+||+||||+||||+||+++|+++|++++....+ +..+++.++|++|++++++
T Consensus 144 ~~~~~~~~~~~~l~~a~lgFl~~N~~pakiFmGD~GS~~lG~~la~~~l~~~~~~~~~~~~~~~~~~~~~p~~D~~~~i~ 223 (249)
T cd06853 144 NGQVLVALLALALAGALLGFLPYNFHPARIFMGDAGSLFLGFLLAVLSILGTQKSSTAISPVVPLLILAVPLFDTLFVII 223 (249)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhCCcccEEeeCchHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 456677888899999999999999999999999999999999999999987543 3445778899999999999
Q ss_pred HHHhhheeeecCCCCCCCCCCC--hhhHHHhhcCC
Q 010720 443 QVLYFKITKHLLGGGRRLFRMA--PFHHHLELCGL 475 (503)
Q Consensus 443 QV~~fK~~rR~~g~GkriF~~~--pLHH~l~~~G~ 475 (503)
| |.. +||++|++| |+||++++.|+
T Consensus 224 r--------R~~-~g~~~f~~dr~Hlh~~l~~~g~ 249 (249)
T cd06853 224 R--------RLL-RGRSPFQADRDHLHHRLLRLGL 249 (249)
T ss_pred H--------HHH-cCCCCCCCCchhHHHHHHHccC
Confidence 5 333 589999964 99999998874
No 11
>cd06855 GT_GPT_euk UDP-GlcNAc:dolichol-P GlcNAc-1-P transferase (GPT) catalyzes the transfer of GlcNAc-1-P from UDP-GlcNAc to dolichol-P to form GlcNAc-P-P-dolichol. The reaction is the first step in the assembly of dolichol-linked oligosaccharide intermediates and is essential for eukaryotic N-glycosylation. GPT activity has been identified in all eukaryotic cells examined to date. A series of six conserved motifs designated A through F, ranging in length from 5 to 13 amino acid residues, has been identified in this family. They have been determined to be important for stable expression, substrate binding, or catalytic activities.
Probab=100.00 E-value=1.1e-42 Score=351.09 Aligned_cols=254 Identities=18% Similarity=0.160 Sum_probs=183.2
Q ss_pred HHHHHHHHhhhhhhhhhcCCCCCCCCCCCcccccchhHHHHHHHHHHHh-ccc---------hhhHHHHHHHHHHHHHHH
Q 010720 193 ICVPLLKSLKIRQIIRKEGPARHSRKGRTPTMGGLFFVPIGIAVTIATV-GFS---------SLQVSGASAATLAIALIG 262 (503)
Q Consensus 193 l~Ip~L~~l~~~~~ir~d~p~r~~hk~~tPtmGGI~ii~~~li~~~l~~-~~~---------~~~i~~ll~~tl~~~lIG 262 (503)
.++++.++.+.. ..| .+|.||++||++||++++.. +.++..+. ... ..+...++.+++.++++|
T Consensus 3 ~~i~~~~~~~l~---~~d--~~k~~~~~vP~~GGlai~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG 76 (283)
T cd06855 3 KFGPLFIKAGLY---GID--LNKNGEEKIPESAGLVPGIV-FLIVLFLFIPFPFLKDFPHDKLVEYLSALLSICCMTFLG 76 (283)
T ss_pred hHHHHHHHCCCc---ccC--CCCCCCCCCCCcCcHHHHHH-HHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 345555544332 223 45778899999999998753 33333221 110 123344556667788999
Q ss_pred HHhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCCccceeeecc-cccccchhhhHHHHHHHHHHHHHhh
Q 010720 263 LIDDVICLVKNHSSGLSAWSRLILEVAVGTWFSFWLDATSIPSPYGMKMLVPLP-APLGLLFLGKFYLLLTSFTFVSMGN 341 (503)
Q Consensus 263 ~lDD~~~l~~k~~~GLs~~~KLllQi~aall~~l~~~~~~i~~~~~~~~~ip~~-~~~g~i~lg~l~~~lti~~iv~~sN 341 (503)
++||+. +++++.|+++|+++++++.++.... ... ....+|++ .....+++++++++++++++++++|
T Consensus 77 ~lDD~~--------~l~~~~Kl~~q~~aa~~~~~~~~~~-~~~---~~~~~p~~~~~~~~i~l~~l~~~lt~~~iv~~~N 144 (283)
T cd06855 77 FADDVL--------DLRWRHKLILPTFASLPLLMVYYGN-TGI---TLPIVPLRPLLGTLIDLGILYYVYMILLAVFCTN 144 (283)
T ss_pred Hhhchh--------ccCchHHHHHHHHHHHHHHHHHhcc-ccc---ceeecchhhcccccccccHHHHHHHHHHHHHHhh
Confidence 999998 6899999999999998755332211 100 00112211 0011246778999999999999999
Q ss_pred hhhcccCCCchhhHHHHHHHHHHHHHhc------------ccChHHHHHHHHHHHHHHHHhhcCccCCccccCchhHHHH
Q 010720 342 GVNLTDGLDGLAGGTAALAFIGMSIAVL------------PICSELSIFGASMAGACVGFLLHNRYRASVFMGDTGSLAL 409 (503)
Q Consensus 342 AvNl~DGlDGLA~G~siI~~~~L~i~~~------------~~~~~l~i~~~alaGAllGFL~fN~~PAKIFMGDtGSl~L 409 (503)
|+|++||+||||+|++++++.++++... .++.+...++++++|+|+|||+||+|||||||||+||+++
T Consensus 145 a~N~~DGlDGLa~g~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ga~lGFL~~N~~PAkIFMGD~GSl~L 224 (283)
T cd06855 145 SINIYAGINGLEVGQSLVIALSILLYNLLELNGSSGSMTLDAHLFSLYLLLPFIAVSLALLYYNWYPSKVFVGDTFTYFA 224 (283)
T ss_pred hhhhhcccchhHHHHHHHHHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHhcCCCccceeeechHHHHH
Confidence 9999999999999999999988876432 1345677889999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhheeeecCCCCCCCCCCChhh
Q 010720 410 GGALASMAACTGMFFPLFVSSGIFVVEASSVIMQVLYFKITKHLLGGGRRLFRMAPFH 467 (503)
Q Consensus 410 G~~LA~iaI~~~~~~~llil~gifiie~lsvIiQV~~fK~~rR~~g~GkriF~~~pLH 467 (503)
|+++|++++..+++...++...|.+++....+-| .++..||.+ +||.+|+++.-|
T Consensus 225 G~~la~~~i~~~~~~~~~~~~~p~~~~~~l~~P~--~~~~~~r~~-~~~~~~~~d~~h 279 (283)
T cd06855 225 GMVFAVVGILGHFSKTLLLFFIPQIINFLYSLPQ--LFGIVPCPR-HRLPKFNPKTGL 279 (283)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhH--hheeeeccc-cCCCCCCCCcCC
Confidence 9999999999988877766666777776665544 345556655 688999998655
No 12
>cd06856 GT_GPT_archaea UDP-GlcNAc:dolichol-P GlcNAc-1-P transferase (GPT)-like proteins in archaea. Eukaryotic GPT catalyzes the transfer of GlcNAc-1-P from UDP-GlcNAc to dolichol-P to form GlcNAc-P-P-dolichol. The reaction is the first step in the assembly of dolichol-linked oligosaccharide intermediates and is essential for eukaryotic N-linked glycosylation. Evidence for the existence of the N-glycosylation pathway in archaea has emerged and genes responsible for the pathway have been identified. A glycosyl transferase gene Mv1751 in M. voltae encodes for the enzyme that carries out the first step in the pathway, the attachment of GlcNAc to a dolichol lipid carrier in the membrane. A lethal mutation in the alg7 (GPT) gene in Saccharomyces cerevisiae was successfully complemented with Mv1751, the archaea gene, indicating that eukaryotic and archaeal enzymes may use the same substrates and are evolutionarily closer than the bacterial enzyme, which uses a different substrate.
Probab=100.00 E-value=7.6e-42 Score=344.56 Aligned_cols=261 Identities=23% Similarity=0.339 Sum_probs=193.1
Q ss_pred CCCCCCcccccchhHHHHHHHHHHHhcc-chhhHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHHHHH
Q 010720 216 SRKGRTPTMGGLFFVPIGIAVTIATVGF-SSLQVSGASAATLAIALIGLIDDVICLVKNHSSGLSAWSRLILEVAVGTWF 294 (503)
Q Consensus 216 ~hk~~tPtmGGI~ii~~~li~~~l~~~~-~~~~i~~ll~~tl~~~lIG~lDD~~~l~~k~~~GLs~~~KLllQi~aall~ 294 (503)
.+|++||++||++++...++...++... ...+...++.+++.++++|++||+. ++++|.|+++|+++++++
T Consensus 8 ~~~~~vP~~GGi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lG~~DD~~--------~l~~~~Kl~~~~~aa~~l 79 (280)
T cd06856 8 PGKPEVPEMGGIAVLLGFSLGLLFLSALTHSVEALALLITSLLAGLIGLLDDIL--------GLSQSEKVLLTALPAIPL 79 (280)
T ss_pred cCCCCCCCcchHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhhhccc--------cCCHHHHHHHHHHHHHHH
Confidence 3466999999999875333222222111 1223444556677788999999998 799999999999999887
Q ss_pred HHHhhcCCCCCCCccceeeecccccccchhhhHHHHHHHHHHHHHhhhhhcccCCCchhhHHHHHHHHHHHHHh-cccCh
Q 010720 295 SFWLDATSIPSPYGMKMLVPLPAPLGLLFLGKFYLLLTSFTFVSMGNGVNLTDGLDGLAGGTAALAFIGMSIAV-LPICS 373 (503)
Q Consensus 295 ~l~~~~~~i~~~~~~~~~ip~~~~~g~i~lg~l~~~lti~~iv~~sNAvNl~DGlDGLA~G~siI~~~~L~i~~-~~~~~ 373 (503)
..+.... +.+.+|. .+....++++++++++++++.+||+|++||+|||++|++++++.++++.. ..++.
T Consensus 80 ~~~~~~~---------~~~~~p~-~~~~~~~~~~~~~~~l~iv~~~Na~N~~DGinGL~~g~~~i~~~~l~~~~~~~~~~ 149 (280)
T cd06856 80 LVLKAGN---------PLTSLPI-GGRVLGILYYLLIVPLGITGASNAFNMLAGFNGLEAGMGIIILLALAIILLINGDY 149 (280)
T ss_pred HHHHHhc---------ceeecCc-cchhhhhHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHcCCH
Confidence 6543211 0112221 11112235677889999999999999999999999999999999887654 34556
Q ss_pred HHHHHHHHHHHHHHHHhhcCccCCccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhee--e
Q 010720 374 ELSIFGASMAGACVGFLLHNRYRASVFMGDTGSLALGGALASMAACTGMFFPLFVSSGIFVVEASSVIMQVLYFKIT--K 451 (503)
Q Consensus 374 ~l~i~~~alaGAllGFL~fN~~PAKIFMGDtGSl~LG~~LA~iaI~~~~~~~llil~gifiie~lsvIiQV~~fK~~--r 451 (503)
+...++++++|+++|||+||+|||||||||+||+++|+.+|++++..+.++.+++++.|+++|.+..+.|..-.+-. |
T Consensus 150 ~~~~l~~~l~~a~lgFL~~N~~PAkiF~GD~GS~~lG~~la~~~i~~~~~~~~~il~~P~~id~~l~l~~~~~~~~~~~~ 229 (280)
T cd06856 150 DALIIALILVAALLAFLLYNKYPAKVFPGDVGTLPIGALIGTIAVLGGLEIILLILLLPYVIDFLLKLRSKGGGKEHREK 229 (280)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCccceeccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC
Confidence 77778889999999999999999999999999999999999999999999999999999999999999876433211 0
Q ss_pred --ecCCCCCCCCC---CChhhH--HH-hhcCCChhHHHHHHHHHHHHHHHHH
Q 010720 452 --HLLGGGRRLFR---MAPFHH--HL-ELCGLKEPMIVAGAYVISSVLALFA 495 (503)
Q Consensus 452 --R~~g~GkriF~---~~pLHH--~l-~~~G~se~~iV~~~~~i~~llall~ 495 (503)
+.+.+|+ +.. ...++| .+ .++.++|+|+|...|.+++++++++
T Consensus 230 ~~~~~~~g~-l~~~~~~~~~~~~~~l~~~g~~~E~~l~~~l~~i~~~~~~~~ 280 (280)
T cd06856 230 PTKVLEDGT-LYPPPDKSSLLTLRLLLRKGPMTEKEVVLVLWALEALLGILA 280 (280)
T ss_pred CCeECCCCc-EecCCCcCchhHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC
Confidence 0111232 111 123444 33 3578999999999999999998763
No 13
>cd06851 GT_GPT_like This family includes eukaryotic UDP-GlcNAc:dolichol-P GlcNAc-1-P transferase (GPT) and archaeal GPT-like glycosyltransferases. Eukaryotic GPT catalyzes the transfer of GlcNAc-1-P from UDP-GlcNAc to dolichol-P to form GlcNAc-P-P-dolichol. The reaction is the first step in the assembly of dolichol-linked oligosaccharide intermediates and is essential for eukaryotic N-linked glycosylation. GPT activity has been identified in all eukaryotic cells examined to date. Evidence for the existence of the N-glycosylation pathway in archaea has emerged and genes responsible for the pathway have been identified. A glycosyl transferase gene Mv1751 in M. voltae encodes for the enzyme that carries out the first step in the pathway, the attachment of GlcNAc to a dolichol lipid carrier in the membrane. A lethal mutation in the alg7 (GPT) gene in Saccharomyces cerevisiae was successfully complemented with Mv1751, the archaeal gene, indicating eukaryotic and archaeal enzymes may use the
Probab=100.00 E-value=1.2e-40 Score=325.88 Aligned_cols=207 Identities=21% Similarity=0.280 Sum_probs=161.1
Q ss_pred CCCCCCCCcccccchhHHHHHHHHHHH-hcc-----c---hhhHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHH
Q 010720 214 RHSRKGRTPTMGGLFFVPIGIAVTIAT-VGF-----S---SLQVSGASAATLAIALIGLIDDVICLVKNHSSGLSAWSRL 284 (503)
Q Consensus 214 r~~hk~~tPtmGGI~ii~~~li~~~l~-~~~-----~---~~~i~~ll~~tl~~~lIG~lDD~~~l~~k~~~GLs~~~KL 284 (503)
+|++|++|||+||++++.. +.++..+ ... . ..+.+.++.+++.++++|++||+. ++++|.|+
T Consensus 6 ~k~~~~~tP~~GGi~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~lDD~~--------~l~~~~Kl 76 (223)
T cd06851 6 NKKGNVMIPEPGGISILIG-FVASEITLIFFPFLSFPHFPISEILAALITSVLGFSVGIIDDRL--------TMGGWFKP 76 (223)
T ss_pred CCCCCCCCCCcchHHHHHH-HHHHHHHHHHccccccccchHHHHHHHHHHHHHHHHHHHHHhcc--------cCCHHHHH
Confidence 3567889999999998864 3333332 111 1 122334455566788999999998 79999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCccceeeecccccccchhhhHHHHHHHHHHHHHhhhhhcccCCCchhhHHHHHHHHHH
Q 010720 285 ILEVAVGTWFSFWLDATSIPSPYGMKMLVPLPAPLGLLFLGKFYLLLTSFTFVSMGNGVNLTDGLDGLAGGTAALAFIGM 364 (503)
Q Consensus 285 llQi~aall~~l~~~~~~i~~~~~~~~~ip~~~~~g~i~lg~l~~~lti~~iv~~sNAvNl~DGlDGLA~G~siI~~~~L 364 (503)
++|+++++++..+.... .. ...|+. .+.+++++++++++++++++++||+|++||+||||+|++++++.++
T Consensus 77 ~~q~~~a~~~~~~~~~~--~~-----~~~~~~--~~~~~~~~~~~~~~~~~iv~~~Na~N~~DGiDGLa~g~~~i~~~~l 147 (223)
T cd06851 77 VALAFAAAPILLLGAYD--SN-----LDFPLF--GGSVKIPSLYLVLVVFMIVITGNAFNSIAGLNGVEAGFTTIISFAL 147 (223)
T ss_pred HHHHHHHHHHHHHHHhc--cc-----eeeccc--ccchhhhHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHH
Confidence 99999887665432111 00 112221 1234667889999999999999999999999999999999999988
Q ss_pred HHHh-cccChHHHHHHHHHHHHHHHHhhcCccCCccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 010720 365 SIAV-LPICSELSIFGASMAGACVGFLLHNRYRASVFMGDTGSLALGGALASMAACTGMFFPLFVSSGIFVVEAS 438 (503)
Q Consensus 365 ~i~~-~~~~~~l~i~~~alaGAllGFL~fN~~PAKIFMGDtGSl~LG~~LA~iaI~~~~~~~llil~gifiie~l 438 (503)
++.. ..++.+...++++++||++|||+||+|||||||||+||+++|+++|++++..+.++..+++..|.++|..
T Consensus 148 ~~~~~~~~~~~~~~~~~~l~gallgFL~~N~~PAkIFMGD~GS~~lG~~la~~~i~~~~~~~~~~~~~P~~i~f~ 222 (223)
T cd06851 148 AISLLVQQNYEIGIACLCLAFASLAFLYYNKYPSRIFPGDTGAYMFGATYAVVAILGEVEKIAAVAFIPAIINFF 222 (223)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHHHHHhhcChhheeccchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 7654 3456778888999999999999999999999999999999999999999999988888888888888863
No 14
>cd06912 GT_MraY_like This subfamily is composed of uncharacterized bacterial glycosyltransferases in the MraY-like family. This family contains both eukaryotic and prokaryotic UDP-D-N-acetylhexosamine:polyprenol phosphate D-N-acetylhexosamine-1-phosphate transferases, which catalyze the transfer of a D-N-acetylhexosamine 1-phosphate to a membrane-bound polyprenol phosphate. This is the initiation step of protein N-glycosylation in eukaryotes and peptidoglycan biosynthesis in bacteria. The three bacterial members MraY, WecA, and WbpL/WbcO, utilize undecaprenol phosphate as the acceptor substrate, but use different UDP-sugar donor substrates. MraY-type transferases are highly specific for UDP-N-acetylmuramate-pentapeptide, whereas WecA proteins are selective for UDP-N-acetylglucosamine (UDP-GlcNAc). The WbcO/WbpL substrate specificity has not yet been determined, but the structure of their biosynthetic end products implies that UDP-N-acetyl-D-fucosamine (UDP-FucNAc) and/or UDPN-acetyl-D-
Probab=100.00 E-value=3.1e-39 Score=309.58 Aligned_cols=188 Identities=26% Similarity=0.346 Sum_probs=144.8
Q ss_pred CCCCCCCCCcccccchhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCc-hHHHHHHHHHHH
Q 010720 213 ARHSRKGRTPTMGGLFFVPIGIAVTIATVGFSSLQVSGASAATLAIALIGLIDDVICLVKNHSSGLS-AWSRLILEVAVG 291 (503)
Q Consensus 213 ~r~~hk~~tPtmGGI~ii~~~li~~~l~~~~~~~~i~~ll~~tl~~~lIG~lDD~~~l~~k~~~GLs-~~~KLllQi~aa 291 (503)
+||.||++||++||+++++..++...++......+...++.++..++++|++||++ +++ +|.|+++|++++
T Consensus 3 ~rk~H~~~~P~~GGi~i~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~iG~~DD~~--------~l~~~~~kl~~q~~~a 74 (193)
T cd06912 3 IQKFHTRPTPRIGGVAIFLGLLAGLLLLSLLSGSLLLLLLLAALPAFLAGLLEDIT--------KRVSPRIRLLATFLSA 74 (193)
T ss_pred CCCCCCCCCCCccHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhhh--------hcccHHHHHHHHHHHH
Confidence 68999999999999998864333333322222233344555667788999999998 578 999999999999
Q ss_pred HHHHHHhhcCCCCCCCccceeeecccccccchhhhHHHHHHHHHHHHHhhhhhcccCCCchhhHHHHHHHHHHHHHh-cc
Q 010720 292 TWFSFWLDATSIPSPYGMKMLVPLPAPLGLLFLGKFYLLLTSFTFVSMGNGVNLTDGLDGLAGGTAALAFIGMSIAV-LP 370 (503)
Q Consensus 292 ll~~l~~~~~~i~~~~~~~~~ip~~~~~g~i~lg~l~~~lti~~iv~~sNAvNl~DGlDGLA~G~siI~~~~L~i~~-~~ 370 (503)
+++..+... .... ...|+ ....+++++++++++++++++.+||+|++||+|||++|++++++.++++.. ..
T Consensus 75 ~~~~~~~~~-~~~~-----~~~~~--~~~~~~~~~~~~~~~~~~iv~~~Na~N~~DGidGLa~g~~~i~~~~l~~~~~~~ 146 (193)
T cd06912 75 LLAVWLLGA-SITR-----LDLPG--LDLLLSFPPFAIIFTIFAVAGVANAFNIIDGFNGLASGVAIISLLSLALVAFQV 146 (193)
T ss_pred HHHHHHhcC-ccce-----eeccc--cccchhhhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHc
Confidence 876544321 1110 01121 111235578889999999999999999999999999999999999888754 34
Q ss_pred cChHHHHHHHHHHHHHHHHhhcCccCCccccCchhHHHHHHHHHHH
Q 010720 371 ICSELSIFGASMAGACVGFLLHNRYRASVFMGDTGSLALGGALASM 416 (503)
Q Consensus 371 ~~~~l~i~~~alaGAllGFL~fN~~PAKIFMGDtGSl~LG~~LA~i 416 (503)
++.+...++++++|+++|||+||+|||||||||+||+++|+++|++
T Consensus 147 g~~~~~~~~~~l~gallgFL~~N~~pAkiFmGD~GS~~lG~~la~l 192 (193)
T cd06912 147 GDTDLAFLALLLAGALLGFLIFNFPFGKIFLGDGGAYLLGFLLAWL 192 (193)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCChhheeccchhhHHHHHHHHHh
Confidence 5667778899999999999999999999999999999999999875
No 15
>cd06499 GT_MraY-like Glycosyltransferase 4 (GT4) includes both eukaryotic and prokaryotic UDP-D-N-acetylhexosamine:polyprenol phosphate D-N-acetylhexosamine-1-phosphate transferases. They catalyze the transfer of a D-N-acetylhexosamine 1-phosphate to a membrane-bound polyprenol phosphate, which is the initiation step of protein N-glycosylation in eukaryotes and peptidoglycan biosynthesis in bacteria. One member, D-N-acetylhexosamine 1-phosphate transferase (GPT) is a eukaryotic enzyme, which is specific for UDP-GlcNAc as donor substrate and dolichol-phosphate as the membrane bound acceptor. The bacterial members MraY, WecA, and WbpL/WbcO utilize undecaprenol phosphate as the acceptor substrate, but use different UDP-sugar donor substrates. MraY-type transferases are highly specific for UDP-N-acetylmuramate-pentapeptide, whereas WecA proteins are selective for UDP-N-acetylglucosamine (UDP-GlcNAc). The WbcO/WbpL substrate specificity has not yet been determined, but the structure of thei
Probab=100.00 E-value=2.1e-38 Score=302.07 Aligned_cols=184 Identities=34% Similarity=0.497 Sum_probs=141.4
Q ss_pred CCcccccchhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHhh
Q 010720 220 RTPTMGGLFFVPIGIAVTIATVGFSSLQVSGASAATLAIALIGLIDDVICLVKNHSSGLSAWSRLILEVAVGTWFSFWLD 299 (503)
Q Consensus 220 ~tPtmGGI~ii~~~li~~~l~~~~~~~~i~~ll~~tl~~~lIG~lDD~~~l~~k~~~GLs~~~KLllQi~aall~~l~~~ 299 (503)
+|||+||++++...++...++....+.+...++.+...++++|++||+++++| |+++|.|+++|+++++++.....
T Consensus 1 ~tP~~GGi~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~~DD~~~l~~----gl~~~~kl~~q~~~a~~~~~~~~ 76 (185)
T cd06499 1 PTPTMGGLAILLGFLLGVLLYIPHSNTLILLALLSGLVAGIVGFIDDLLGLKV----ELSEREKLLLQILAALFLLLIGG 76 (185)
T ss_pred CCCCcccHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHhc----CCCHHHHHHHHHHHHHHHHHHHH
Confidence 69999999987533332222222233344445566677889999999998744 99999999999999877654332
Q ss_pred cCCCCCCCccceeeecccccccchhhhHHHHHHHHHHHHHhhhhhcccCCCchhhHHHHHHHHHHHHHh-cccChHHHHH
Q 010720 300 ATSIPSPYGMKMLVPLPAPLGLLFLGKFYLLLTSFTFVSMGNGVNLTDGLDGLAGGTAALAFIGMSIAV-LPICSELSIF 378 (503)
Q Consensus 300 ~~~i~~~~~~~~~ip~~~~~g~i~lg~l~~~lti~~iv~~sNAvNl~DGlDGLA~G~siI~~~~L~i~~-~~~~~~l~i~ 378 (503)
.. .. ...|+ ...+++++++++++++++++.+||+|++||+||||+|++++++.++++.. ..++.+...+
T Consensus 77 ~~--~~-----~~~~~---~~~~~l~~~~~~~~~~~iv~~~Na~N~~DGlDGLa~g~~~i~~~~l~~~~~~~~~~~~~~~ 146 (185)
T cd06499 77 GH--TT-----VTTPL---GFVLDLGIFYIPFAIIAIVGATNAVNLIDGMDGLAAGISVIASIACALFALLSGQTTSALL 146 (185)
T ss_pred Hh--ce-----eecCc---cchhhhhHHHHHHHHHHHHHHhhHhHHhhccchHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 11 00 01111 12346778899999999999999999999999999999999998887653 3456677788
Q ss_pred HHHHHHHHHHHhhcCccCCccccCchhHHHHHHHHHHHH
Q 010720 379 GASMAGACVGFLLHNRYRASVFMGDTGSLALGGALASMA 417 (503)
Q Consensus 379 ~~alaGAllGFL~fN~~PAKIFMGDtGSl~LG~~LA~ia 417 (503)
+++++|+|+|||+||+||||+||||+||+++|+.+|+++
T Consensus 147 ~~~l~ga~lgFL~~N~~pAkiFmGD~GS~~lG~~la~~a 185 (185)
T cd06499 147 FIILAGACLGFLYFNFYPAKIFMGDTGSYFLGAAYAAVA 185 (185)
T ss_pred HHHHHHHHHHHHHHhCCccceecccHHHHHHHHHHHHhC
Confidence 899999999999999999999999999999999999763
No 16
>PF00953 Glycos_transf_4: Glycosyl transferase family 4; InterPro: IPR000715 This entry represents a family of UDP-GlcNAc/MurNAc: polyisoprenol-P GlcNAc/MurNAc-1-P transferases. Members of the family include eukaryotic N-acetylglucosamine-1-phosphate transferases, which catalyse the conversion of UDP-N-acteyl-D-glucosamine and dolichyl phosphate to UMP and N-acetyl-D-glucosaminyl-diphosphodolichol in the glycosylation pathway; and bacterial phospho-N-acetylmuramoyl-pentapeptide-transferases, which catalyse the first step of the lipid cycle reactions in the biosynthesis of cell wall peptidoglycan.; GO: 0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity, 0016021 integral to membrane
Probab=100.00 E-value=3.7e-32 Score=252.87 Aligned_cols=154 Identities=37% Similarity=0.532 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCCccceeeecccccccchhh-hHHH
Q 010720 251 ASAATLAIALIGLIDDVICLVKNHSSGLSAWSRLILEVAVGTWFSFWLDATSIPSPYGMKMLVPLPAPLGLLFLG-KFYL 329 (503)
Q Consensus 251 ll~~tl~~~lIG~lDD~~~l~~k~~~GLs~~~KLllQi~aall~~l~~~~~~i~~~~~~~~~ip~~~~~g~i~lg-~l~~ 329 (503)
++.++..++++|++||++ +++++.|+.+|++++.++....... . .+++|...+..+++ ++++
T Consensus 4 ~l~~~~~~~~iG~~DD~~--------~l~~~~rl~~q~~~a~~~~~~~~~~--~-------~~~~~~~~~~~~l~~~~~~ 66 (159)
T PF00953_consen 4 LLLALLLIGLIGLLDDLK--------GLSPRLRLLLQLLAALLLVFLGGGL--T-------SLGIPFGGGIINLGPWLAI 66 (159)
T ss_pred HHHHHHHHHHHHHHHHhc--------CCcHHHHHHHHHHHHHHHHHHHHHh--c-------ccccccCcchHHHHHHHHH
Confidence 455667788999999997 8999999999999998877544211 0 12222222455666 6788
Q ss_pred HHHHHHHHHHhhhhhcccCCCchhhHHHHHHHHHHHHHh-cccChHHHHHHHHHHHHHHHHhhcCccCCccccCchhHHH
Q 010720 330 LLTSFTFVSMGNGVNLTDGLDGLAGGTAALAFIGMSIAV-LPICSELSIFGASMAGACVGFLLHNRYRASVFMGDTGSLA 408 (503)
Q Consensus 330 ~lti~~iv~~sNAvNl~DGlDGLA~G~siI~~~~L~i~~-~~~~~~l~i~~~alaGAllGFL~fN~~PAKIFMGDtGSl~ 408 (503)
+++++++++.+||+|++||+||+++|++++++..+++.. ..++.+...++.+++++|+||++||+||||+||||+||++
T Consensus 67 ~l~~~~i~~~~Na~N~~DG~dGla~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~a~lgfl~~N~~pakiFmGD~GS~~ 146 (159)
T PF00953_consen 67 ILTVLWIVGFINAFNFMDGIDGLAAGVSIIALLALAVIAYLQGNYELAILCLALAGALLGFLIFNFPPAKIFMGDSGSLF 146 (159)
T ss_pred HHHHHHHHHHHhHHHhhccCcchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHCCCCEEEeccHhHHH
Confidence 999999999999999999999999999999999888754 4566788888899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 010720 409 LGGALASMAACTG 421 (503)
Q Consensus 409 LG~~LA~iaI~~~ 421 (503)
+|+++|++++..|
T Consensus 147 lG~~la~~~i~~~ 159 (159)
T PF00953_consen 147 LGFLLAVLAILGH 159 (159)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999988653
No 17
>KOG2788 consensus Glycosyltransferase [Carbohydrate transport and metabolism]
Probab=99.75 E-value=2.6e-18 Score=174.25 Aligned_cols=181 Identities=21% Similarity=0.265 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCCccceeeecccc----c--ccchh
Q 010720 251 ASAATLAIALIGLIDDVICLVKNHSSGLSAWSRLILEVAVGTWFSFWLDATSIPSPYGMKMLVPLPAP----L--GLLFL 324 (503)
Q Consensus 251 ll~~tl~~~lIG~lDD~~~l~~k~~~GLs~~~KLllQi~aall~~l~~~~~~i~~~~~~~~~ip~~~~----~--g~i~l 324 (503)
.+.+...+.++|+.||.. ++++|.|+++..++++++.+.+... ++ .|++-.|++ . ..+++
T Consensus 104 allsi~~~ilLGfaDD~l--------dlrWRhKl~lPt~AtlPLLmVYyv~-----~g-~TtV~iP~~~r~~l~~~~~nl 169 (418)
T KOG2788|consen 104 ALLSICSMILLGFADDVL--------DLRWRHKLLLPTIATLPLLMVYYVS-----FG-VTTVVIPKPLRNILGLTSLNL 169 (418)
T ss_pred HHHHHhHHHHhcccchhc--------cchhhhheeccchhhCceEEEEEEc-----CC-ceEEEecHHHHhhhccceecc
Confidence 345555677999999999 7999999999999998876322111 11 133444432 1 24568
Q ss_pred hhHHHHHHHHHHHHHhhhhhcccCCCchhhHHHHHHHHHHHHH---hc--ccCh--------HHHHHHHHHHHHHHHHhh
Q 010720 325 GKFYLLLTSFTFVSMGNGVNLTDGLDGLAGGTAALAFIGMSIA---VL--PICS--------ELSIFGASMAGACVGFLL 391 (503)
Q Consensus 325 g~l~~~lti~~iv~~sNAvNl~DGlDGLA~G~siI~~~~L~i~---~~--~~~~--------~l~i~~~alaGAllGFL~ 391 (503)
|.+|++......++.+|++|+..|+||+..|+++++.....+. .+ +.++ .-..+...+.+..+|.+.
T Consensus 170 g~lYy~yM~~lavFCtNsINIlAGiNGlEvGQslvia~~i~l~~l~~~~~~~~~~~~~~~h~fSlyl~~p~~~~sl~ll~ 249 (418)
T KOG2788|consen 170 GFLYYVYMGLLAVFCTNSINILAGINGLEVGQSLVIAASILLNNLVYLWRSVDPEATRFAHAFSLYLTIPLLATSLALLK 249 (418)
T ss_pred cchHHhhhceeeeeccCchhhhcccchheeccchhhhHHHHhhhHHHHhcccCccccchhhhHHHHHHhHHHHHHHHHHH
Confidence 8999999999999999999999999999999999887765531 11 1111 123566789999999999
Q ss_pred cCccCCccccCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010720 392 HNRYRASVFMGDTGSLALGGALASMAACTGMFFPLFVSSGIFVVEASSVIMQVL 445 (503)
Q Consensus 392 fN~~PAKIFMGDtGSl~LG~~LA~iaI~~~~~~~llil~gifiie~lsvIiQV~ 445 (503)
|||||+|||.|||-.|+-|..+|+++|+++..-.+++...|-+++.+..+-|..
T Consensus 250 ~n~yPsrVFVGDTfcyfaGMt~AVVgILGHFSKTllLFFiPQI~NFlyS~PQLf 303 (418)
T KOG2788|consen 250 YNWYPSRVFVGDTFCYFAGMTFAVVGILGHFSKTLLLFFIPQILNFLYSLPQLF 303 (418)
T ss_pred hccCCceEEeccceeeeccchhhhhHHhhhhHHHHHHHHHHHHHHHHHhhHHHc
Confidence 999999999999999999999999999998766666778899999999999963
No 18
>PF10555 MraY_sig1: Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ; InterPro: IPR018480 Phospho-N-acetylmuramoyl-pentapeptide-transferase (2.7.8.13 from EC) (MraY) is a bacterial enzyme responsible for the formation of the first lipid intermediate of the cell wall peptidoglycan synthesis []. It catalyses the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. MraY is an integral membrane protein with probably ten transmembrane domains. It belongs to family 4 of glycosyl transferases. Homologues of MraY have been found in archaebacteria Methanobacterium thermoautotrophicum and in Arabidopsis thaliana (Mouse-ear cress). This entry represents two conserved sites found in these proteins. The first site is located at the end of the first cytoplasmic loop and the beginning of the second transmembrane domain. The second site is located in the third cytoplasmic loop.
Probab=96.44 E-value=0.00074 Score=38.14 Aligned_cols=12 Identities=67% Similarity=1.182 Sum_probs=10.5
Q ss_pred CCCCcccccchh
Q 010720 218 KGRTPTMGGLFF 229 (503)
Q Consensus 218 k~~tPtmGGI~i 229 (503)
|++||+|||++|
T Consensus 1 K~gTPTMGGi~~ 12 (13)
T PF10555_consen 1 KSGTPTMGGIVF 12 (13)
T ss_pred CCCCccceeEEE
Confidence 679999999976
No 19
>PHA00458 single-stranded DNA-binding protein
Probab=71.68 E-value=2.7 Score=41.99 Aligned_cols=33 Identities=30% Similarity=0.599 Sum_probs=27.7
Q ss_pred ccceeeccccc-----ccccCCCCCCCCCCCceeeeec
Q 010720 55 HGYQLQYTAVQ-----DFDIASFDNWSDDEGTVGYMVS 87 (503)
Q Consensus 55 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 87 (503)
.|++||-..|| +|+=..-|||+|++---||-.+
T Consensus 167 asVkLqL~sv~vieL~ef~ggg~d~~~d~~~e~gy~a~ 204 (233)
T PHA00458 167 ASVKLQLESVMLVELAEFGGGGEDDWADEDEEDGYVAS 204 (233)
T ss_pred ceeEEEeeeEEEEEEEEecCCCcccccCccccCCeecc
Confidence 37999999999 8877888999988666688777
No 20
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=60.69 E-value=4.9 Score=42.13 Aligned_cols=86 Identities=17% Similarity=0.309 Sum_probs=43.8
Q ss_pred ccccccccceEEeeccc-cccCCCCCCcccCCCCCcccccc----ceeecccccccccCCCCCCCCCCCceeeeecCCCC
Q 010720 17 HFRARRSSSLIVAKTSC-RFRSGSLSPELNGSKSNVSRTHG----YQLQYTAVQDFDIASFDNWSDDEGTVGYMVSSSEG 91 (503)
Q Consensus 17 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (503)
.||.+|-.. ..+|+.- -+-.|.-+|.-|.++.|..|+.= |..||.-=| +-+.+++.++.... --.+||+
T Consensus 221 W~Rlqr~~r-laqk~DY~a~~~gp~~p~~~~~s~GD~kLAqSAQMYHYQHQKQQ---MiamEk~~~~~~~~--~~~~sde 294 (341)
T PF06809_consen 221 WYRLQREIR-LAQKVDYPATAYGPGGPAKDKSSPGDRKLAQSAQMYHYQHQKQQ---MIAMEKHKEEPKEL--DSDSSDE 294 (341)
T ss_pred EEEeccccc-ccccccccccccCCCCcCCCCCCcchHHHHHHHHHHHHHHHHHH---HHhhcccCCCCCcc--ccccccc
Confidence 345544444 2334322 12344556666666666433322 333443333 23334444332221 2348999
Q ss_pred CCCCCce-e-----eeccccCCC
Q 010720 92 EESDGEI-V-----LNSISDTDL 108 (503)
Q Consensus 92 ~~~~~~~-~-----~~~~~~~~~ 108 (503)
|++|||| | |.|+-|||.
T Consensus 295 eneeGDfTVYECPGLAPTGeMEV 317 (341)
T PF06809_consen 295 ENEEGDFTVYECPGLAPTGEMEV 317 (341)
T ss_pred cccCCCeeEEeCCCCCCCCceee
Confidence 9999999 4 567777764
No 21
>COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]
Probab=35.40 E-value=2.4e+02 Score=29.22 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 010720 252 SAATLAIALIGLIDDVIC 269 (503)
Q Consensus 252 l~~tl~~~lIG~lDD~~~ 269 (503)
+...+.+++.||.-|+.-
T Consensus 241 ~~~~~~I~l~GF~Gdlvm 258 (303)
T COG4589 241 LLAGLLIGLSGFCGDLVM 258 (303)
T ss_pred HHHHHHHHHHHhhhHHHH
Confidence 344567789999999863
No 22
>PRK12287 tqsA pheromone autoinducer 2 transporter; Reviewed
Probab=32.52 E-value=2.2e+02 Score=29.84 Aligned_cols=54 Identities=17% Similarity=0.326 Sum_probs=29.4
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHHhhhhhhhccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010720 133 RRRHRIKLGLFINLGLITFLTVLLLFVDWCAWKIVRLPLAPFYLTRPFFISAVLVSCAGYICVPLLKSL 201 (503)
Q Consensus 133 ~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lis~~l~~l~Ip~L~~l 201 (503)
|+|+++.++..-.+.+...+..+++.+.+.. ...+|++++++++. .+-|..+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~il~P~~~A~~ia~----ll~P~v~~L 54 (344)
T PRK12287 1 MAKPIITLNGLKIVIMLGMLVIILCGIRFAA-----------DIIVPFILALFIAV----VLNPLVQHM 54 (344)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH----HHHHHHHHH
Confidence 4666666654444444445555555554433 25667766666654 444555544
No 23
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=29.35 E-value=39 Score=28.03 Aligned_cols=47 Identities=23% Similarity=0.357 Sum_probs=33.1
Q ss_pred CCCCCceeeeecCCCCCCCCCceeeeccccCCCCcccccccchhhHHH
Q 010720 76 SDDEGTVGYMVSSSEGEESDGEIVLNSISDTDLPSVFVSNNDALTLTA 123 (503)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (503)
+.+-|+.|..+++ +.+..+......+-.+.++|++.++.+|+-.+.+
T Consensus 53 a~~~GA~gvIi~~-~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~~ 99 (101)
T PF02225_consen 53 AQKAGAKGVIIYN-PPPNNGSMIDSEDPDPIDIPVVFISYEDGEALLA 99 (101)
T ss_dssp HHHTTESEEEEE--TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHHH
T ss_pred HHHcCCEEEEEEe-CCccccCcccccCCCCcEEEEEEeCHHHHhhhhc
Confidence 3456788888888 5555555556666678999999999999877654
No 24
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=24.17 E-value=5.3e+02 Score=23.37 Aligned_cols=41 Identities=20% Similarity=0.092 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHhhhhhcccCCCchhhHHHHHHHHHHH
Q 010720 325 GKFYLLLTSFTFVSMGNGVNLTDGLDGLAGGTAALAFIGMS 365 (503)
Q Consensus 325 g~l~~~lti~~iv~~sNAvNl~DGlDGLA~G~siI~~~~L~ 365 (503)
+|++..++++.=+.-+.+.+..||.++.......+++.+++
T Consensus 3 ~wl~L~~Ai~~Ev~~t~~LK~s~g~~~~~~~~~~i~~~~~s 43 (120)
T PRK10452 3 YWILLALAIATEITGTLSMKWASVSEGNGGFILMLVMISLS 43 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Confidence 46777777777778888999999999886654444444333
No 25
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=23.97 E-value=2.3e+02 Score=23.01 Aligned_cols=9 Identities=33% Similarity=0.291 Sum_probs=3.7
Q ss_pred cccchhhHH
Q 010720 114 SNNDALTLT 122 (503)
Q Consensus 114 ~~~~~~~~~ 122 (503)
|.||..+.-
T Consensus 6 SDnETA~~F 14 (60)
T PF06072_consen 6 SDNETATEF 14 (60)
T ss_pred cccccHHHH
Confidence 344443333
No 26
>PF15259 GTSE1_N: G-2 and S-phase expressed 1
Probab=23.53 E-value=46 Score=31.23 Aligned_cols=20 Identities=35% Similarity=0.542 Sum_probs=15.8
Q ss_pred cCCCCCCCCCceeeeccccC
Q 010720 87 SSSEGEESDGEIVLNSISDT 106 (503)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~ 106 (503)
+||++||.|+|++..||---
T Consensus 19 sss~e~eeddeVf~gPv~hk 38 (141)
T PF15259_consen 19 SSSNEEEEDDEVFFGPVGHK 38 (141)
T ss_pred cccCCcccCcceeecCCCcc
Confidence 36777789999999998643
No 27
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=23.29 E-value=26 Score=23.04 Aligned_cols=12 Identities=33% Similarity=0.789 Sum_probs=10.0
Q ss_pred hhhhcccccccc
Q 010720 6 SFQRHSQSHLGH 17 (503)
Q Consensus 6 ~~~~~~~~~~~~ 17 (503)
++++|++.|.|-
T Consensus 1 ~l~~H~~~H~~~ 12 (26)
T PF13465_consen 1 NLRRHMRTHTGE 12 (26)
T ss_dssp HHHHHHHHHSSS
T ss_pred CHHHHhhhcCCC
Confidence 578999999874
No 28
>PF06942 GlpM: GlpM protein; InterPro: IPR009707 This family consists of several bacterial GlpM membrane proteins. GlpM is a hydrophobic protein containing 109 amino acids. It is thought that GlpM may play a role in alginate biosynthesis in Pseudomonas aeruginosa [].
Probab=22.16 E-value=5.9e+02 Score=22.99 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=37.2
Q ss_pred hhhHHHHHHHHhhhhhh--hhhhhchhhHHHHHHHHHHHHHHHHhhhh
Q 010720 118 ALTLTAHRLAMIGRARR--RHRIKLGLFINLGLITFLTVLLLFVDWCA 163 (503)
Q Consensus 118 ~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~l~~~l~~~~~~~~~~~ 163 (503)
..++.||.+..-+|+.- |.-+.-|.+...-=.+||..+||+.+++.
T Consensus 33 TFALIahyiVg~er~~~~lr~T~lFgi~siipy~~yL~svy~~~~~~~ 80 (107)
T PF06942_consen 33 TFALIAHYIVGSERGMEALRTTALFGIWSIIPYAAYLLSVYYFSDRMR 80 (107)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 35789999999998665 44456788888888999999999998855
Done!