Query 010720
Match_columns 503
No_of_seqs 233 out of 1515
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 12:50:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010720.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010720hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lx0_A Membrane fusion protein 21.4 82 0.0028 20.8 2.9 29 135-163 2-30 (32)
2 1kf6_D Fumarate reductase 13 k 16.1 1.1E+02 0.0039 26.6 3.6 34 464-497 81-114 (119)
3 1znf_A 31ST zinc finger from X 16.0 41 0.0014 19.0 0.6 13 4-16 14-26 (27)
4 2ab3_A ZNF29; zinc finger prot 14.9 45 0.0015 19.1 0.5 13 4-16 17-29 (29)
5 2l42_A DNA-binding protein RAP 14.8 96 0.0033 26.5 2.7 33 78-113 42-74 (106)
6 1sp2_A SP1F2; zinc finger, tra 14.5 40 0.0014 20.0 0.2 12 5-16 18-29 (31)
7 1rik_A E6APC1 peptide; E6-bind 14.2 45 0.0015 19.2 0.4 12 5-16 16-27 (29)
8 2kvf_A Zinc finger and BTB dom 13.9 43 0.0015 19.2 0.2 12 5-16 17-28 (28)
9 2m0d_A Zinc finger and BTB dom 12.9 45 0.0016 19.1 0.1 12 5-16 17-28 (30)
10 2lvr_A Zinc finger and BTB dom 16.3 46 0.0016 19.2 0.0 12 5-16 17-28 (30)
No 1
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=21.41 E-value=82 Score=20.84 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=14.8
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHHhhhh
Q 010720 135 RHRIKLGLFINLGLITFLTVLLLFVDWCA 163 (503)
Q Consensus 135 ~~~~~~g~~~~~~l~~~l~~~~~~~~~~~ 163 (503)
||.|-.=..-...|..||..-+++|.|++
T Consensus 2 khtiweviaglvalltflafgfwlfkylq 30 (32)
T 2lx0_A 2 KHTIWEVIAGLVALLTFLAFGFWLFKYLQ 30 (32)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44443333334455556666666666654
No 2
>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_D* 1l0v_D* 2b76_D* 3cir_D* 3p4p_D* 3p4q_D* 3p4r_D* 3p4s_D*
Probab=16.09 E-value=1.1e+02 Score=26.63 Aligned_cols=34 Identities=15% Similarity=0.152 Sum_probs=26.3
Q ss_pred ChhhHHHhhcCCChhHHHHHHHHHHHHHHHHHHH
Q 010720 464 APFHHHLELCGLKEPMIVAGAYVISSVLALFAGY 497 (503)
Q Consensus 464 ~pLHH~l~~~G~se~~iV~~~~~i~~llall~i~ 497 (503)
|++||-+.+.+.+...--..+|..+.+..++++.
T Consensus 81 HRihh~lHDlkih~~~~~~~~Yg~A~l~sv~~~~ 114 (119)
T 1kf6_D 81 HRMHHAMHDLKIHVPAGKWVFYGLAAILTVVTLI 114 (119)
T ss_dssp HHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhheeecCcchhhHHHHHHHHHHHHHH
Confidence 3579999888887776667889988887777643
No 3
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=16.04 E-value=41 Score=19.04 Aligned_cols=13 Identities=31% Similarity=0.473 Sum_probs=9.9
Q ss_pred cchhhhccccccc
Q 010720 4 CSSFQRHSQSHLG 16 (503)
Q Consensus 4 ~~~~~~~~~~~~~ 16 (503)
-+++++|.+.|-|
T Consensus 14 ~~~l~~H~~~h~~ 26 (27)
T 1znf_A 14 KSALSRHQRVHKN 26 (27)
T ss_dssp HHHHHHHGGGTCC
T ss_pred HHHHHHHHHHcCC
Confidence 3578899998864
No 4
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=14.90 E-value=45 Score=19.11 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=9.7
Q ss_pred cchhhhccccccc
Q 010720 4 CSSFQRHSQSHLG 16 (503)
Q Consensus 4 ~~~~~~~~~~~~~ 16 (503)
-+++++|.+.|-|
T Consensus 17 ~~~l~~H~~~H~~ 29 (29)
T 2ab3_A 17 RRKLNRHKKIHTG 29 (29)
T ss_dssp HHHHHHHHGGGTC
T ss_pred HHHHHHHHHHhCC
Confidence 3578899988854
No 5
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=14.76 E-value=96 Score=26.52 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=24.2
Q ss_pred CCCceeeeecCCCCCCCCCceeeeccccCCCCcccc
Q 010720 78 DEGTVGYMVSSSEGEESDGEIVLNSISDTDLPSVFV 113 (503)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (503)
|.|+.-+.++ .|.+++.||..|.-|.+||+++-
T Consensus 42 nGG~Vl~~lP---~~s~~~~yVVSpyN~t~LpTVtp 74 (106)
T 2l42_A 42 NGGEVLDSKP---RESKENVFIVSPYNHTNLPTVTP 74 (106)
T ss_dssp TTSCCCEECC---CCCSSCCCCBCTTCCCSSSBCCT
T ss_pred cCcEEhhhCc---ccccCCeEEEeCCCCCCCccccH
Confidence 4455544555 33466999999999999999873
No 6
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=14.47 E-value=40 Score=20.05 Aligned_cols=12 Identities=42% Similarity=0.847 Sum_probs=9.8
Q ss_pred chhhhccccccc
Q 010720 5 SSFQRHSQSHLG 16 (503)
Q Consensus 5 ~~~~~~~~~~~~ 16 (503)
+++++|.+.|-|
T Consensus 18 ~~L~~H~~~H~~ 29 (31)
T 1sp2_A 18 DELQRHKRTHTG 29 (31)
T ss_dssp HHHHHHHTTTSC
T ss_pred hHHHHHHHHhcC
Confidence 578999998865
No 7
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=14.19 E-value=45 Score=19.16 Aligned_cols=12 Identities=17% Similarity=0.119 Sum_probs=9.7
Q ss_pred chhhhccccccc
Q 010720 5 SSFQRHSQSHLG 16 (503)
Q Consensus 5 ~~~~~~~~~~~~ 16 (503)
+++++|.+.|.|
T Consensus 16 ~~l~~H~~~H~~ 27 (29)
T 1rik_A 16 DHLTLHILLHEN 27 (29)
T ss_dssp HHHHHHHTGGGS
T ss_pred HHHHHHHHHhcC
Confidence 578899998865
No 8
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=13.85 E-value=43 Score=19.21 Aligned_cols=12 Identities=25% Similarity=0.529 Sum_probs=9.2
Q ss_pred chhhhccccccc
Q 010720 5 SSFQRHSQSHLG 16 (503)
Q Consensus 5 ~~~~~~~~~~~~ 16 (503)
+++++|.+.|-|
T Consensus 17 ~~l~~H~~~h~~ 28 (28)
T 2kvf_A 17 HQMETHYRVHTG 28 (28)
T ss_dssp HHHHHHHTTSCC
T ss_pred HHHHHHHHhcCC
Confidence 578889888854
No 9
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=12.92 E-value=45 Score=19.10 Aligned_cols=12 Identities=33% Similarity=0.337 Sum_probs=9.5
Q ss_pred chhhhccccccc
Q 010720 5 SSFQRHSQSHLG 16 (503)
Q Consensus 5 ~~~~~~~~~~~~ 16 (503)
+++++|.+.|-|
T Consensus 17 ~~l~~H~~~h~~ 28 (30)
T 2m0d_A 17 TSKMRHLETHDT 28 (30)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHhcc
Confidence 578899988865
No 10
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=16.29 E-value=46 Score=19.24 Aligned_cols=12 Identities=42% Similarity=0.747 Sum_probs=9.0
Q ss_pred chhhhccccccc
Q 010720 5 SSFQRHSQSHLG 16 (503)
Q Consensus 5 ~~~~~~~~~~~~ 16 (503)
+++++|.+.|.|
T Consensus 17 ~~l~~H~~~h~~ 28 (30)
T 2lvr_A 17 GALQRHVRIHTG 28 (30)
Confidence 467888888764
Done!