Query 010720
Match_columns 503
No_of_seqs 233 out of 1515
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 12:50:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010720.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010720hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kf6d_ f.21.2.2 (D:) Fumarate 18.2 42 0.003 27.3 3.4 35 464-498 81-115 (119)
2 d2adra1 g.37.1.1 (A:102-130) A 15.2 17 0.0012 22.4 0.1 13 5-17 16-28 (29)
3 d1sp1a_ g.37.1.1 (A:) Transcri 14.3 20 0.0014 22.1 0.3 12 5-16 16-27 (29)
4 d2glia3 g.37.1.1 (A:168-197) F 13.9 18 0.0013 22.5 -0.0 12 5-16 18-29 (30)
5 d1a1ia1 g.37.1.1 (A:103-131) Z 11.9 20 0.0014 22.2 -0.3 12 5-16 18-29 (29)
6 d1a1ia2 g.37.1.1 (A:132-159) Z 11.4 20 0.0015 21.9 -0.4 12 5-16 17-28 (28)
7 d1sp2a_ g.37.1.1 (A:) Transcri 11.0 28 0.002 21.6 0.2 12 5-16 18-29 (31)
8 d1p7aa_ g.37.1.1 (A:) Kruppel- 10.6 32 0.0023 22.0 0.4 12 5-16 25-36 (37)
9 d2dlka2 g.37.1.1 (A:38-73) Zin 10.3 23 0.0017 22.8 -0.4 13 5-17 17-29 (36)
10 d1x6ea1 g.37.1.1 (A:8-40) Zinc 8.3 42 0.003 21.1 0.3 13 4-16 20-32 (33)
No 1
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=18.23 E-value=42 Score=27.30 Aligned_cols=35 Identities=14% Similarity=0.116 Sum_probs=26.9
Q ss_pred ChhhHHHhhcCCChhHHHHHHHHHHHHHHHHHHHH
Q 010720 464 APFHHHLELCGLKEPMIVAGAYVISSVLALFAGYV 498 (503)
Q Consensus 464 ~pLHH~l~~~G~se~~iV~~~~~i~~llall~i~~ 498 (503)
|++||-+.+.+.+-+.--..+|..+.+.++++++.
T Consensus 81 HRihHglHDlkih~p~g~~~fYg~A~l~sv~~~~~ 115 (119)
T d1kf6d_ 81 HRMHHAMHDLKIHVPAGKWVFYGLAAILTVVTLIG 115 (119)
T ss_dssp HHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHH
Confidence 35799999888876655667899998888877543
No 2
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=15.24 E-value=17 Score=22.38 Aligned_cols=13 Identities=31% Similarity=0.552 Sum_probs=10.6
Q ss_pred chhhhcccccccc
Q 010720 5 SSFQRHSQSHLGH 17 (503)
Q Consensus 5 ~~~~~~~~~~~~~ 17 (503)
+.++||+++|-|.
T Consensus 16 ~~L~~H~r~HTgE 28 (29)
T d2adra1 16 EHLKRHYRSHTNE 28 (29)
T ss_dssp HHHHHHHHTTTSS
T ss_pred hHcccccCcccCC
Confidence 5689999999873
No 3
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.34 E-value=20 Score=22.08 Aligned_cols=12 Identities=17% Similarity=0.479 Sum_probs=10.4
Q ss_pred chhhhccccccc
Q 010720 5 SSFQRHSQSHLG 16 (503)
Q Consensus 5 ~~~~~~~~~~~~ 16 (503)
|.+++|+++|-|
T Consensus 16 s~L~~H~r~Htg 27 (29)
T d1sp1a_ 16 DHLSKHIKTHQN 27 (29)
T ss_dssp HHHHHHHHGGGC
T ss_pred HHhhhhcCccCC
Confidence 678999999977
No 4
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.87 E-value=18 Score=22.54 Aligned_cols=12 Identities=33% Similarity=0.648 Sum_probs=10.2
Q ss_pred chhhhccccccc
Q 010720 5 SSFQRHSQSHLG 16 (503)
Q Consensus 5 ~~~~~~~~~~~~ 16 (503)
+.+++|.+.|-|
T Consensus 18 ~~L~~H~r~HtG 29 (30)
T d2glia3 18 ENLKTHLRSHTG 29 (30)
T ss_dssp HHHHHHHHHTTT
T ss_pred hHhhhhcCcCcC
Confidence 568999999977
No 5
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.89 E-value=20 Score=22.17 Aligned_cols=12 Identities=33% Similarity=0.653 Sum_probs=9.8
Q ss_pred chhhhccccccc
Q 010720 5 SSFQRHSQSHLG 16 (503)
Q Consensus 5 ~~~~~~~~~~~~ 16 (503)
+.+++|++.|-|
T Consensus 18 ~~L~~H~r~HtG 29 (29)
T d1a1ia1 18 ADLTRHIRIHTG 29 (29)
T ss_dssp HHHHHHTHHHHT
T ss_pred hHhhhhcCccCC
Confidence 568999999876
No 6
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.38 E-value=20 Score=21.93 Aligned_cols=12 Identities=25% Similarity=0.573 Sum_probs=9.9
Q ss_pred chhhhccccccc
Q 010720 5 SSFQRHSQSHLG 16 (503)
Q Consensus 5 ~~~~~~~~~~~~ 16 (503)
+.+++|++.|-|
T Consensus 17 ~~L~~H~r~HTG 28 (28)
T d1a1ia2 17 DHLTTHIRTHTG 28 (28)
T ss_dssp HHHHHHHHHHHC
T ss_pred ccccccCCCccC
Confidence 578999999976
No 7
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.01 E-value=28 Score=21.65 Aligned_cols=12 Identities=42% Similarity=0.847 Sum_probs=10.2
Q ss_pred chhhhccccccc
Q 010720 5 SSFQRHSQSHLG 16 (503)
Q Consensus 5 ~~~~~~~~~~~~ 16 (503)
+.+++|++.|-|
T Consensus 18 ~~L~~H~r~Htg 29 (31)
T d1sp2a_ 18 DELQRHKRTHTG 29 (31)
T ss_dssp HHHHHHHTTTSC
T ss_pred hHhhhhcCcccc
Confidence 568999999976
No 8
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.65 E-value=32 Score=21.99 Aligned_cols=12 Identities=17% Similarity=0.318 Sum_probs=10.3
Q ss_pred chhhhccccccc
Q 010720 5 SSFQRHSQSHLG 16 (503)
Q Consensus 5 ~~~~~~~~~~~~ 16 (503)
+++++|++.|++
T Consensus 25 ~~L~~H~r~H~~ 36 (37)
T d1p7aa_ 25 DHLALHRKRHML 36 (37)
T ss_dssp HHHHHHHGGGTC
T ss_pred HHHHHHHhcCcC
Confidence 678999999985
No 9
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.25 E-value=23 Score=22.76 Aligned_cols=13 Identities=15% Similarity=0.296 Sum_probs=10.5
Q ss_pred chhhhcccccccc
Q 010720 5 SSFQRHSQSHLGH 17 (503)
Q Consensus 5 ~~~~~~~~~~~~~ 17 (503)
+.++||+++|-|-
T Consensus 17 ~~L~~H~r~Htge 29 (36)
T d2dlka2 17 KHLKEHMKLHSDT 29 (36)
T ss_dssp HHHHHHHHHHHTS
T ss_pred hHhccccCeeCCC
Confidence 4689999999873
No 10
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.35 E-value=42 Score=21.11 Aligned_cols=13 Identities=31% Similarity=0.526 Sum_probs=11.0
Q ss_pred cchhhhccccccc
Q 010720 4 CSSFQRHSQSHLG 16 (503)
Q Consensus 4 ~~~~~~~~~~~~~ 16 (503)
-+++++|++.|-|
T Consensus 20 ~~~L~~H~r~Htg 32 (33)
T d1x6ea1 20 SSILVQHQRVHTG 32 (33)
T ss_dssp HHHHHHHHHGGGC
T ss_pred hHHhHhhccccCC
Confidence 4689999999976
Done!