Query 010721
Match_columns 503
No_of_seqs 457 out of 2716
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 12:51:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010721.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010721hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 8.5E-44 2.9E-48 353.3 34.2 410 86-501 11-485 (491)
2 3o7q_A L-fucose-proton symport 100.0 3.7E-36 1.3E-40 293.9 30.8 371 85-472 24-426 (438)
3 1pw4_A Glycerol-3-phosphate tr 100.0 7.5E-37 2.6E-41 300.0 14.9 381 85-478 26-433 (451)
4 4aps_A DI-OR tripeptide H+ sym 100.0 1.4E-32 4.6E-37 272.7 20.8 392 89-485 15-478 (491)
5 2gfp_A EMRD, multidrug resista 100.0 5.9E-32 2E-36 258.4 13.6 357 89-463 2-361 (375)
6 2xut_A Proton/peptide symporte 100.0 3.4E-28 1.2E-32 243.1 19.0 169 92-263 17-197 (524)
7 2cfq_A Lactose permease; trans 99.9 6E-29 2E-33 240.5 5.9 382 90-486 10-407 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.6 1.2E-14 4.2E-19 141.8 12.0 174 89-265 254-434 (451)
9 3o7q_A L-fucose-proton symport 99.4 6.9E-13 2.4E-17 128.8 8.8 168 92-264 263-432 (438)
10 4aps_A DI-OR tripeptide H+ sym 99.4 2.7E-12 9.4E-17 126.6 12.9 163 97-263 293-470 (491)
11 2cfq_A Lactose permease; trans 99.4 4.7E-13 1.6E-17 129.0 6.9 145 123-268 258-404 (417)
12 4gc0_A D-xylose-proton symport 99.3 7.6E-12 2.6E-16 123.4 9.6 169 97-268 287-467 (491)
13 2gfp_A EMRD, multidrug resista 99.1 1.9E-11 6.6E-16 116.0 1.0 157 89-251 201-363 (375)
14 2xut_A Proton/peptide symporte 99.0 2.2E-09 7.4E-14 106.8 13.3 137 332-476 56-196 (524)
15 2g9p_A Antimicrobial peptide l 57.6 5.1 0.00017 19.1 1.3 14 143-156 2-15 (26)
16 4dve_A Biotin transporter BIOY 26.0 1.6E+02 0.0054 24.0 6.2 25 130-154 99-123 (198)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=8.5e-44 Score=353.29 Aligned_cols=410 Identities=26% Similarity=0.455 Sum_probs=315.8
Q ss_pred HHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCC------CchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHH
Q 010721 86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEG------NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQI 159 (503)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~ 159 (503)
+...++.+++.++.++|.+.++..+|.+.++++.+. ++.+.|++.+++.+|.++|++++|+++||+|||+++++
T Consensus 11 ~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~ 90 (491)
T 4gc0_A 11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKI 90 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 444556678889999999999999999999885421 24567899999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHH------------------hhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHH
Q 010721 160 DTIPLILGAIISA------------------QAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVG 221 (503)
Q Consensus 160 ~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 221 (503)
+.+++.+++++++ +++|+++++++|+++|++.|...+....+++|+.|+++|++..++.+.+
T Consensus 91 ~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~ 170 (491)
T 4gc0_A 91 AAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFA 170 (491)
T ss_dssp HHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhh
Confidence 9999999999999 4789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCC-------CchhHHHHHhhHHHHHHHHHHhccccCChHHHHhcCChHHHHHHHHHHcCCcchH
Q 010721 222 TCLGIITSLFLGIPAEDD-------PHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEIN 294 (503)
Q Consensus 222 ~~~G~~ig~~~~~~l~~~-------~~~wr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (503)
..+|.++++.++..+... ..+||+.+.+..+..++..+..+++||+|+++..+++.+++.+.+++...+....
T Consensus 171 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~ 250 (491)
T 4gc0_A 171 IIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLAT 250 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhH
Confidence 999999998887654322 1239999999999999999999999999999999999998888777655443322
Q ss_pred HHHHHHHHHHHhcCCCCcccchhhhccCccccch----------------------------hhhHHHHHHHHHHHHHHH
Q 010721 295 KAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAF----------------------------IGDGALASLLVGVTNFAG 346 (503)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~ 346 (503)
................ ......+..+...... ...........++..+++
T Consensus 251 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (491)
T 4gc0_A 251 QAVQEIKHSLDHGRKT--GGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTF 328 (491)
T ss_dssp HHHHHHHHHHHHHHHH--TTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhh--hhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHH
Confidence 2221111111100000 0000000000000000 000334556677888899
Q ss_pred HHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcccc
Q 010721 347 ALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTR 426 (503)
Q Consensus 347 ~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (503)
.++.+++.||+|||+.++.+.....++.+.+....... ......+....++..++..+..++.+.+.+|.+|++.|
T Consensus 329 ~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R 404 (491)
T 4gc0_A 329 TVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ----APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIR 404 (491)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTH
T ss_pred HHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc----cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHH
Confidence 99999999999999999998888888777766544322 23344455556666677777888888999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH------HcCCcchhHhHHHHHHHHHHHHHhhccCCCCCCHHHHHHHhccCCCC
Q 010721 427 GKIMGFSFSVHWVCNFLVGLFFLDLVE------TFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEEIEMSLNANSTP 500 (503)
Q Consensus 427 ~~~~g~~~~~~~~g~~~~~~~~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (503)
+++.|+.+.++++++++++.+.+.+.+ ..+....|++++++++++.++.++++||||+|+++|+|+.+|+++++
T Consensus 405 ~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~~ 484 (491)
T 4gc0_A 405 GKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKK 484 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCcc
Confidence 999999999999999999988776643 34566788899999999999999999999999999999988766544
Q ss_pred C
Q 010721 501 G 501 (503)
Q Consensus 501 ~ 501 (503)
+
T Consensus 485 ~ 485 (491)
T 4gc0_A 485 T 485 (491)
T ss_dssp -
T ss_pred c
Confidence 4
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=3.7e-36 Score=293.88 Aligned_cols=371 Identities=14% Similarity=0.059 Sum_probs=274.4
Q ss_pred hHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHH
Q 010721 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (503)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 164 (503)
++..+..+++..+..+++.....+.+|.+.+++|+ +..+.|++.+++.+++.++++++|+++||+|||++++++.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTL--TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence 45556777888888999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHH---HhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCC-CCC
Q 010721 165 ILGAIIS---AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE-DDP 240 (503)
Q Consensus 165 ~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~-~~~ 240 (503)
+++.+++ +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++++++.+. +..
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 181 (438)
T 3o7q_A 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181 (438)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999 888999999999999999999999999999999999999999999999999999999999999988 555
Q ss_pred ch------------------------hHHHHHhhHHHHHHHHHHhcc--ccCChHHHHhcCChHHHHHHHHHHcCCcchH
Q 010721 241 HW------------------------WRTMLYIASLPGFILALGMQF--TVESPRWLCKGGMLNDAKAVIANLWGESEIN 294 (503)
Q Consensus 241 ~~------------------------wr~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (503)
+. ||+.|++.+++.++..+..++ .||+++...+++++.+..+..++..+++...
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (438)
T 3o7q_A 182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWR 261 (438)
T ss_dssp CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTTSHHHHHHHHTTCSHHH
T ss_pred ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccchhhhHHHHHhChHHH
Confidence 44 999998877766665544433 4665442212222333334445554444433
Q ss_pred HHHHHHHHHHHhcCCCCcccchhhh-ccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHH
Q 010721 295 KAIEEFQLVIKKDGSDLDSQWSELL-EEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAIS 373 (503)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 373 (503)
............. .....+...+ ........ ....+.......++.+++.++.+++.||+++|+.+..+.++..++
T Consensus 262 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~ 338 (438)
T 3o7q_A 262 WAVLAQFCYVGAQ--TACWSYLIRYAVEEIPGMT-AGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMAL 338 (438)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHSTTCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHhhhccCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 2222111111000 0001122222 11111111 123556677788999999999999999999999998888877777
Q ss_pred HHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010721 374 MLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE 453 (503)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 453 (503)
.+++.+. ......+.. .+.+.+.....+....+..|.+|++ ++.+.++.. ...+|+.++|.+.|.+.+
T Consensus 339 ~~~~~~~---------~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~ 406 (438)
T 3o7q_A 339 CLISAFA---------GGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSD 406 (438)
T ss_dssp HHHHHHC---------CHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHc---------CCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHH
Confidence 6665542 112222222 2333333344577778888989876 888888877 677999999999999999
Q ss_pred HcC-CcchhHhHHHHHHHHH
Q 010721 454 TFG-VAPVYAGFGGVSLLSA 472 (503)
Q Consensus 454 ~~g-~~~~~~~~~~~~~~~~ 472 (503)
..| +...|.+.+++.++..
T Consensus 407 ~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 407 AAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHTSSGGGGHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHHHHHHHH
Confidence 999 8888876655444433
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=7.5e-37 Score=300.00 Aligned_cols=381 Identities=14% Similarity=0.089 Sum_probs=275.0
Q ss_pred hHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHH
Q 010721 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (503)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 164 (503)
++..+..++++.+..+++...+.+.+|.+.+++ . +..+.|++.+++.++..++++++|+++||+|||++++++.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-F--SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-T--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c--cHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence 456678888888999999999999999999999 8 8889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh----hhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCC
Q 010721 165 ILGAIISAQ----AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP 240 (503)
Q Consensus 165 ~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~ 240 (503)
+++.+++++ +++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|++++++.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 182 (451)
T 1pw4_A 103 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 182 (451)
T ss_dssp HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999998866543
Q ss_pred chhHHHHHhhHHHHHHHHHH-hccccCChHHHHhcCChH---H--H--------HH----H-HHHHcCCcchHHHHHHHH
Q 010721 241 HWWRTMLYIASLPGFILALG-MQFTVESPRWLCKGGMLN---D--A--------KA----V-IANLWGESEINKAIEEFQ 301 (503)
Q Consensus 241 ~~wr~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~--~--------~~----~-~~~~~~~~~~~~~~~~~~ 301 (503)
++||+.|++.+++.++..++ .+++||+|+....+..++ + . +. . .++..+++.........
T Consensus 183 g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 261 (451)
T 1pw4_A 183 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIAN- 261 (451)
T ss_dssp CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHH-
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHH-
Confidence 33999999988887766544 455787765421111000 0 0 00 0 01111111111100000
Q ss_pred HHHHhcCCCCcccchhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhccc--CCchHHHhhHHHHH-HHHHHHH
Q 010721 302 LVIKKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKE--GRQKLLIGSYLGMA-ISMLLVV 378 (503)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~~-~~~~~~~ 378 (503)
............+...+......... ...+.......++.+++.++.+++.||+ ++|+.+..+..+.. ++.+++.
T Consensus 262 -~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (451)
T 1pw4_A 262 -VFVYLLRYGILDWSPTYLKEVKHFAL-DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW 339 (451)
T ss_dssp -HHHHHHHHHHHHHHHHHBTTBSCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 00000000001122222211111111 1255677888899999999999999999 99988877766555 4433332
Q ss_pred HHhcCCCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHH-HHHHHHHHHHHHHHHcCC
Q 010721 379 GATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWV-CNFLVGLFFLDLVETFGV 457 (503)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g~ 457 (503)
+. + ...........+..+....+..+....+..|.+|++.|+++.|+.+.+.++ |..++|.+.|.+.+..|+
T Consensus 340 ~~---~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~ 412 (451)
T 1pw4_A 340 MN---P----AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW 412 (451)
T ss_dssp SC---C----TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred Hh---c----ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 21 0 011222222222222222333455668889999999999999999999999 999999999999999999
Q ss_pred cchhHhHHHHHHHHHHHHHhh
Q 010721 458 APVYAGFGGVSLLSALFAYYF 478 (503)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~ 478 (503)
...|++.+++.+++.++.++.
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 413 DGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 989988888887777665544
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=1.4e-32 Score=272.67 Aligned_cols=392 Identities=14% Similarity=0.099 Sum_probs=248.9
Q ss_pred HHHHHHHHHhhhhhhcccchhh-HhHHHh-----hCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhh-hcchHHHHHHh
Q 010721 89 VLIASMSNFLFGYHIGVMNGPI-VSIAKE-----LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK-LGCRRTFQIDT 161 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~~-----~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~ 161 (503)
++.+++..+...+......+.+ +.+.++ +|. +..+.+++.+++.++..++++++|+++|| +|||+++.++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~ 92 (491)
T 4aps_A 15 LSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHI--TRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGG 92 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 3344445555555444443334 444444 888 99999999999999999999999999999 89999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCC--ccchhhHHHHHHHHHHHHHHHhhccCCCC
Q 010721 162 IPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKY--RGSLGTLCQVGTCLGIITSLFLGIPAEDD 239 (503)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~ig~~~~~~l~~~ 239 (503)
++.+++.+++++++|++.++++|+++|++.+...+...+++.|++|+++ |+.++++++.+.++|.+++|.+++.+.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 172 (491)
T 4aps_A 93 VLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA 172 (491)
T ss_dssp HHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999988 77788889999999999999999999887
Q ss_pred CchhHHHHHhhHHHHHHHHHHhccc-cCChH----HHHhcCChHHHHHHHHH----------------HcCCcchHHH--
Q 010721 240 PHWWRTMLYIASLPGFILALGMQFT-VESPR----WLCKGGMLNDAKAVIAN----------------LWGESEINKA-- 296 (503)
Q Consensus 240 ~~~wr~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~-- 296 (503)
.+ ||+.|++.++..++..+..++. ++..+ ....+.+.++.++..+. ..+.......
T Consensus 173 ~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 251 (491)
T 4aps_A 173 AG-YHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYIN 251 (491)
T ss_dssp SC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHH
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchh
Confidence 77 9999999877776665544432 22110 00011111222221111 0000000000
Q ss_pred ----------------------------------HHHH-HHHHHhcCCCCcccchhhhccCccccchhhhHHHHHHHHHH
Q 010721 297 ----------------------------------IEEF-QLVIKKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGV 341 (503)
Q Consensus 297 ----------------------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (503)
.... ..............+...+......... ...+.......+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 330 (491)
T 4aps_A 252 LLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSW-FPVSWFQSLNPL 330 (491)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSS-SCSGGGTTHHHH
T ss_pred hhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCc-cCHHHHhccchH
Confidence 0000 0000000000000000000000000000 012334556677
Q ss_pred HHHHHHHhHHHhhcccCCchHHH-----hhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCcccccccc
Q 010721 342 TNFAGALCASYLMDKEGRQKLLI-----GSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLV 416 (503)
Q Consensus 342 ~~~~~~~~~g~l~d~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (503)
..+++.++.+++.||++||+... .+..+.+++.+++.............+........++.+.......+....+
T Consensus 331 ~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 410 (491)
T 4aps_A 331 FIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSV 410 (491)
T ss_dssp HHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 78888999999999999986544 5555666665555443211100001122222222222222233335667889
Q ss_pred ccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHHhhccCCCCC
Q 010721 417 IPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGR 485 (503)
Q Consensus 417 ~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (503)
+.|.+|++.|+++.|+.+...++|..++|.+.+.+.+ .++...|.+.++++++..++.++..++.+++
T Consensus 411 ~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 411 TTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887765 4667788888888877777666665555443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.97 E-value=5.9e-32 Score=258.36 Aligned_cols=357 Identities=13% Similarity=0.047 Sum_probs=248.6
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 168 (503)
++++++..++..++...+.+.+|.+.+++|. +..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 79 (375)
T 2gfp_A 2 LLMLVLLVAVGQMAQTIYIPAIADMARDLNV--REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLAT 79 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS--TTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhhHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 3566777888889999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHH
Q 010721 169 IISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLY 248 (503)
Q Consensus 169 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~ 248 (503)
++.+++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++++.+..+ ||+.|+
T Consensus 80 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~ 158 (375)
T 2gfp_A 80 LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-WRACYL 158 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-HHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988767 999999
Q ss_pred hhHHHHHHHHH-HhccccCChHHHHhcCChHH-HHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccchhhhccCcccc
Q 010721 249 IASLPGFILAL-GMQFTVESPRWLCKGGMLND-AKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRV 326 (503)
Q Consensus 249 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (503)
+.+++.++..+ ..+++||+++...++++..+ .++..+ ++.......... ...........+...+.......
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~ 232 (375)
T 2gfp_A 159 FLLVLCAGVTFSMARWMPETRPVDAPRTRLLTSYKTLFG----NSGFNCYLLMLI--GGLAGIAAFEACSGVLMGAVLGL 232 (375)
T ss_dssp HHHHHHHHHHCCCCCSSCCCSTTTCCCCCTTTCSTHHHH----HHHHHHHHHHHH--HHHHHHHHHHHHCSCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcccCCCCcccccHHHHHHHHhc----CcchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhCC
Confidence 98888877766 44557877653211111100 001111 000000000000 00000000001111110000000
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHH-HHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHH
Q 010721 327 AFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLG-MAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTF 405 (503)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (503)
.....+.......++.+++.++.+++.||.+++ ...+... ..++..++..... ...+.+.......+.+..
T Consensus 233 -~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~g~~ 304 (375)
T 2gfp_A 233 -SSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWF-----GVMNVWTLLVPAALFFFG 304 (375)
T ss_dssp -HHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh-----ccccHHHHHHHHHHHHHH
Confidence 111245667777888899999999999998872 2222222 2222221111100 001122222222222222
Q ss_pred hcCccccccccccccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHh
Q 010721 406 AIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAG 463 (503)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 463 (503)
.....+....+..|..| ++|+++.|+.+...++|..++|.+.|.+.+..++...+.+
T Consensus 305 ~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 305 AGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 22335667788889998 7899999999999999999999999999887776655544
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=3.4e-28 Score=243.06 Aligned_cols=169 Identities=15% Similarity=0.106 Sum_probs=144.9
Q ss_pred HHHHHHhhhhhhcccchhhH-hHHHhhC------CCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhh-cchHHHHHHhHH
Q 010721 92 ASMSNFLFGYHIGVMNGPIV-SIAKELG------FEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-GCRRTFQIDTIP 163 (503)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~-~i~~~~~------~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~ 163 (503)
+.+..++..+......+.++ .+.+++| . +..+.+++.+++.++..++++++|+++||+ |||+++.++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~ 94 (524)
T 2xut_A 17 IIASEACERFSFYGMRNILTPFLMTALLLSIPEEL--RGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLI 94 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSST--TTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 33444444444444444444 5677888 7 888999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHhhh-hHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhH---HHHHHHHHHHHHHHhhccCCCC
Q 010721 164 LILGAIISAQAH-SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTL---CQVGTCLGIITSLFLGIPAEDD 239 (503)
Q Consensus 164 ~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~ig~~~~~~l~~~ 239 (503)
.+++.+++++++ +++.++++|++.|++.+...+...+++.|++|+++|+++.+. ++.+.++|.+++|.+++.+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 174 (524)
T 2xut_A 95 YCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN 174 (524)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999 999999999999999999999999999999999999877666 8999999999999999998877
Q ss_pred CchhHHHHHhhHHHHHHHHHHhcc
Q 010721 240 PHWWRTMLYIASLPGFILALGMQF 263 (503)
Q Consensus 240 ~~~wr~~~~~~~~~~~~~~~~~~~ 263 (503)
.+ ||+.|++.+++.++..+..++
T Consensus 175 ~g-~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 175 FG-AAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp SC-HHHHHHHHHHHHHHHHHHHHS
T ss_pred cc-HHHHHHHHHHHHHHHHHHHHH
Confidence 77 999999988877766555443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.95 E-value=6e-29 Score=240.55 Aligned_cols=382 Identities=12% Similarity=-0.001 Sum_probs=231.0
Q ss_pred HHHHHHHHhhhhhhcccchhhHhH-HHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHH
Q 010721 90 LIASMSNFLFGYHIGVMNGPIVSI-AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (503)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 168 (503)
+.+....++..+......+.+|.+ ++++|+ +..+.|++.+.+.+++.++++++|+++||+|||++++++..+.+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~ 87 (417)
T 2cfq_A 10 WMFGLFFFFYFFIMGAYFPFFPIWLHDINHI--SKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMF 87 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHTTTCC--CTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 334444455555555666777764 556888 88899999999999999999999999999999999999887765532
Q ss_pred ---HHHHhhhhH-HHHHHHHHHHHhhhhhhchhhhhhhhhcCCC--CCccchhhHHHHHHHHHHHHHHHhhccCCCCCch
Q 010721 169 ---IISAQAHSL-DEMLWGRFLVGLGIGVNTVLVPIYISEVAPT--KYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW 242 (503)
Q Consensus 169 ---~~~~~~~~~-~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~ 242 (503)
....+++.. ..++..+++.|++.+...+.....+.++.++ ++++...+....+..+|..++|.+++++.+ .+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~- 165 (417)
T 2cfq_A 88 APFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-IN- 165 (417)
T ss_dssp HHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hc-
Confidence 212233222 1244567777776666555555555555543 346777788877888899999999888765 34
Q ss_pred hHHHHHhhHHHHHHHHHHhccccCCh-HHHH-hc----CChHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcccch
Q 010721 243 WRTMLYIASLPGFILALGMQFTVESP-RWLC-KG----GMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWS 316 (503)
Q Consensus 243 wr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (503)
||+.|++.++..++..+..++.+|++ +... ++ ++++...+..++..+++................ .....+.
T Consensus 166 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 243 (417)
T 2cfq_A 166 NQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTY--DVFDQQF 243 (417)
T ss_dssp SHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHcCcccccccccccccccccccccHHHHHHHhcCCchhhHHHHHHHHHHHH--HHHHHHH
Confidence 99999987777665555555554433 1100 00 000000111122222222111111000000000 0000011
Q ss_pred hhhccCcccc--chhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHH
Q 010721 317 ELLEEPHSRV--AFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLS 394 (503)
Q Consensus 317 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (503)
..+....+.. ......+....+..++.+++.++.++++||++||+.+..+..+.+++.+++.+. . +.+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~---~-----~~~~~ 315 (417)
T 2cfq_A 244 ANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA---T-----SALEV 315 (417)
T ss_dssp HHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC---C-----SHHHH
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh---c-----cHHHH
Confidence 1110000100 001112455666677888899999999999999998887777666654444221 0 11122
Q ss_pred HHHHHHHHHHHhcCccccccccccccCCcccchhhHHHH-HHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHH
Q 010721 395 ILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFS-FSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSAL 473 (503)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 473 (503)
.....+...+. ....+....+..|.+|++.|+++.++. +....+|++++|.+.|.+.+..|+...|.+.+++++++.+
T Consensus 316 ~~~~~l~~~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~ 394 (417)
T 2cfq_A 316 VILKTLHMFEV-PFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTL 394 (417)
T ss_dssp HHHTTHHHHHH-HHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 22111112111 112233467889999999999999994 7888899999999999999988888888888888887777
Q ss_pred HHHhhccCCCCCC
Q 010721 474 FAYYFIVETKGRS 486 (503)
Q Consensus 474 ~~~~~~~~~~~~~ 486 (503)
+.+...+|+++.+
T Consensus 395 ~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 395 ISVFTLSGPGPLS 407 (417)
T ss_dssp HHTTSSCCSCTTC
T ss_pred HHHhhhcCCCchH
Confidence 6666566655443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.56 E-value=1.2e-14 Score=141.81 Aligned_cols=174 Identities=14% Similarity=0.100 Sum_probs=145.7
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhHHHh-hCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhh--cchHHHHHHhHHHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSIAKE-LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL--GCRRTFQIDTIPLI 165 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~l~~~~~~~~ 165 (503)
++.+.+..++..+........+|.+.++ +|. +..+.+++.+.+.++..++.++.|++.||+ |||+.+.++.++..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 254 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHF--ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 4444555555555555566667777666 788 889999999999999999999999999999 99999988877776
Q ss_pred -HHHHHHHhh--hhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHH-HHHHHHHhhccCCCCCc
Q 010721 166 -LGAIISAQA--HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCL-GIITSLFLGIPAEDDPH 241 (503)
Q Consensus 166 -~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~ig~~~~~~l~~~~~ 241 (503)
++.++..+. .+.+.+.++.++.|++.+...+....++.|.+|+++|++++++.+....+ |..++|.+.+.+.+..+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 411 (451)
T 1pw4_A 332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG 411 (451)
T ss_dssp HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 666666665 37888888899999999999999999999999999999999999999999 99999999999988888
Q ss_pred hhHHHHHhhHHHHHHHHHHhcccc
Q 010721 242 WWRTMLYIASLPGFILALGMQFTV 265 (503)
Q Consensus 242 ~wr~~~~~~~~~~~~~~~~~~~~~ 265 (503)
|+..|++.+++.++..+..++.+
T Consensus 412 -~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 412 -WDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888877766665543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.38 E-value=6.9e-13 Score=128.85 Aligned_cols=168 Identities=11% Similarity=-0.018 Sum_probs=131.3
Q ss_pred HHHHHHhhhhhhcccchhhHhH-HHh-hCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHH
Q 010721 92 ASMSNFLFGYHIGVMNGPIVSI-AKE-LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAI 169 (503)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i-~~~-~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 169 (503)
..+..++...........+|.+ .++ +|. +..+.++..+.+.++..++.++.|+++||+|||+++.++.++.+++.+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~ 340 (438)
T 3o7q_A 263 AVLAQFCYVGAQTACWSYLIRYAVEEIPGM--TAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCL 340 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 3333344444444444555555 544 488 899999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHh
Q 010721 170 ISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYI 249 (503)
Q Consensus 170 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~ 249 (503)
+..+.++.+.++.. ++.|++.+...+...++..|.+|++ ++.+.++.. ...+|..++|.+.+.+.+..++++..|++
T Consensus 341 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 417 (438)
T 3o7q_A 341 ISAFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELI 417 (438)
T ss_dssp HHHHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHH
T ss_pred HHHHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 98888887765554 8899999999999999999999876 888888776 56699999999999988765447788877
Q ss_pred hHHHHHHHHHHhccc
Q 010721 250 ASLPGFILALGMQFT 264 (503)
Q Consensus 250 ~~~~~~~~~~~~~~~ 264 (503)
.++..++..+..++.
T Consensus 418 ~~~~~~~~~~~~~~~ 432 (438)
T 3o7q_A 418 PALCFAVIFIFARFR 432 (438)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHH
Confidence 665555544444443
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.37 E-value=2.7e-12 Score=126.62 Aligned_cols=163 Identities=12% Similarity=-0.021 Sum_probs=125.7
Q ss_pred HhhhhhhcccchhhHhHHHh-hCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHH-----HHhHHHHHHHHH
Q 010721 97 FLFGYHIGVMNGPIVSIAKE-LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQ-----IDTIPLILGAII 170 (503)
Q Consensus 97 ~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~-----~~~~~~~~~~~~ 170 (503)
+............++.+.++ ++. +....+++.+...++..++.++.|++.||+|||+... ++.++.+++.++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~ 370 (491)
T 4aps_A 293 VLFWAIEEQGSVVLATFAAERVDS--SWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLL 370 (491)
T ss_dssp HHHHHHHGGGGTHHHHHHHHSCCC--SSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhccHHHHHHHHHHhcc--CccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHH
Confidence 33333334444455555444 555 5466788889999999999999999999999987655 777777777777
Q ss_pred HHhhh---------hHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCc
Q 010721 171 SAQAH---------SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH 241 (503)
Q Consensus 171 ~~~~~---------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~ 241 (503)
..+.. +.+.++++-++.|++.+...+....++.|.+|+++|+.+.++.+....+|..+++.+.+.+.+..
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~- 449 (491)
T 4aps_A 371 MAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKS- 449 (491)
T ss_dssp THHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSS-
T ss_pred HHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-
Confidence 66643 77778888999999999999999999999999999999999999999999999999999887643
Q ss_pred hhHHHHHhhHHHHHHHHHHhcc
Q 010721 242 WWRTMLYIASLPGFILALGMQF 263 (503)
Q Consensus 242 ~wr~~~~~~~~~~~~~~~~~~~ 263 (503)
+.+.|++.+++.++..+..++
T Consensus 450 -~~~~~~~~~~~~~~~~~~~~~ 470 (491)
T 4aps_A 450 -EVAYFSYFGLGSVVLGIVLVF 470 (491)
T ss_dssp -TTHHHHHTHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHH
Confidence 666777777776666555444
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.37 E-value=4.7e-13 Score=128.99 Aligned_cols=145 Identities=12% Similarity=0.016 Sum_probs=122.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhhh
Q 010721 123 PILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYI 202 (503)
Q Consensus 123 ~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 202 (503)
....++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.|++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888889999999999999999999999999988888888888888888888888888888877777788899
Q ss_pred hhcCCCCCccchhhH-HHHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHHHhcc-ccCCh
Q 010721 203 SEVAPTKYRGSLGTL-CQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF-TVESP 268 (503)
Q Consensus 203 ~~~~~~~~r~~~~~~-~~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~~~~~-~~~~~ 268 (503)
.|.+|++.|+.+.++ ++.+..+|.+++|.+++++.+..+ ++..|.+.+++.++..+..++ .+|.+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999999999999998 488889999999999998887666 889998888887777655444 55543
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.28 E-value=7.6e-12 Score=123.43 Aligned_cols=169 Identities=17% Similarity=0.103 Sum_probs=119.6
Q ss_pred HhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhh--
Q 010721 97 FLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA-- 174 (503)
Q Consensus 97 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-- 174 (503)
+........+....+.+.++.+. +............+...++.++.+++.||+|||+.++.+.....++.+..+..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~ 364 (491)
T 4gc0_A 287 FQQFVGINVVLYYAPEVFKTLGA--STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY 364 (491)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSSC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHhcchHHHHhcCC--CccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh
Confidence 33333444445556778888877 66667777778888899999999999999999999999988888877766543
Q ss_pred ---hhHHHHHHH-HHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCc-----hhHH
Q 010721 175 ---HSLDEMLWG-RFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH-----WWRT 245 (503)
Q Consensus 175 ---~~~~~l~~~-r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~-----~wr~ 245 (503)
++...++.. -+..+++. ...+....+.+|.+|.+.|++++++......+|.++++.+...+.+... ++.+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~ 443 (491)
T 4gc0_A 365 TQAPGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGF 443 (491)
T ss_dssp TTCCHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCH
T ss_pred cccchHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 122222222 22223332 3456777899999999999999999999999999888877665543210 1556
Q ss_pred HHHhhHHHHHHHHHHh-ccccCCh
Q 010721 246 MLYIASLPGFILALGM-QFTVESP 268 (503)
Q Consensus 246 ~~~~~~~~~~~~~~~~-~~~~~~~ 268 (503)
.|++.++++++..+.. +++||+.
T Consensus 444 ~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 444 SYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHHHHHHHHheecCCC
Confidence 7777777777765544 5689974
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.07 E-value=1.9e-11 Score=115.97 Aligned_cols=157 Identities=16% Similarity=0.061 Sum_probs=117.6
Q ss_pred HHHHHHHHHhhhhhhcccchhhHhHHHh-hCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHH-HHH
Q 010721 89 VLIASMSNFLFGYHIGVMNGPIVSIAKE-LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP-LIL 166 (503)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~-~~~ 166 (503)
++...+..++............|.+.++ +|. ++.+.+++.+...++..++.++.+++.||+|++. ..+..+ ..+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~ 276 (375)
T 2gfp_A 201 FNCYLLMLIGGLAGIAAFEACSGVLMGAVLGL--SSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLA 276 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHH--HHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 4444455555555555555566665544 888 8889999999999999999999999999999833 233322 222
Q ss_pred HHH--HHHh--hhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCCch
Q 010721 167 GAI--ISAQ--AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW 242 (503)
Q Consensus 167 ~~~--~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~~~ 242 (503)
+.. .... .++.+.+++.-++.|++.+...+....++.|.+| ++|+++.++.+....+|..+++.+.+.+.+..+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~- 354 (375)
T 2gfp_A 277 GLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ- 354 (375)
T ss_dssp SSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH-
T ss_pred HHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc-
Confidence 222 2222 2477778888999999999999999999999998 789999999999999999999999888766544
Q ss_pred hHHHHHhhH
Q 010721 243 WRTMLYIAS 251 (503)
Q Consensus 243 wr~~~~~~~ 251 (503)
|+..+++.+
T Consensus 355 ~~~~~~~~~ 363 (375)
T 2gfp_A 355 GSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHH
T ss_pred ccHHHHHHH
Confidence 777666543
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.01 E-value=2.2e-09 Score=106.75 Aligned_cols=137 Identities=12% Similarity=0.109 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhccc-CCchHHHhhHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhcCcc
Q 010721 332 GALASLLVGVTNFAGALCASYLMDKE-GRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAG 410 (503)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (503)
.+...+...++..++.++.|+++||+ |||+.+..+.++..++.+++.+.. .+...+....++.+.......
T Consensus 56 ~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~g~~~~~~~ 127 (524)
T 2xut_A 56 AKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE--------HSVQGFYTGLFLIALGSGGIK 127 (524)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS--------SCHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc--------ccHHHHHHHHHHHHHhccccc
Confidence 44667788889999999999999999 999999999888888877776521 022223333333333333445
Q ss_pred ccccccccccCCcccchhhHHH---HHHHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHHHHHHHHHH
Q 010721 411 PVTGLVIPELSSNRTRGKIMGF---SFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAY 476 (503)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 476 (503)
+...+++.|.+|+++|+++.++ .+...++|..++|.+.+.+.+..||+..|.+.+++.++..++..
T Consensus 128 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 128 PLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 7778889999999999876666 88889999999999999999988999999888777666555443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=57.57 E-value=5.1 Score=19.13 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=11.3
Q ss_pred hhhhhhhhhcchHH
Q 010721 143 SSGSLADKLGCRRT 156 (503)
Q Consensus 143 ~~g~l~dr~Grr~~ 156 (503)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999864
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=25.99 E-value=1.6e+02 Score=24.02 Aligned_cols=25 Identities=12% Similarity=0.030 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcch
Q 010721 130 VSIFIAGAFVGSISSGSLADKLGCR 154 (503)
Q Consensus 130 ~s~~~~~~~i~~~~~g~l~dr~Grr 154 (503)
+.=|.+|+.++..+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 4467888889999999999997644
Done!