Query 010721
Match_columns 503
No_of_seqs 457 out of 2716
Neff 11.1
Searched_HMMs 13730
Date Mon Mar 25 12:52:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010721.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010721hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 100.0 1.8E-37 1.3E-41 301.6 12.8 387 85-481 23-433 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 100.0 6.9E-29 5E-33 237.6 24.2 388 86-489 6-410 (417)
3 d1pv7a_ f.38.1.2 (A:) Lactose 99.5 2.1E-15 1.5E-19 142.7 6.4 142 122-264 257-399 (417)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 99.4 6.6E-13 4.8E-17 126.9 13.5 171 90-263 252-429 (447)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 13.2 74 0.0054 14.7 2.2 8 262-269 21-28 (30)
6 d2iuba2 f.17.3.1 (A:286-349) M 12.6 78 0.0057 18.5 2.8 6 475-480 56-61 (64)
7 d1u7ga_ f.44.1.1 (A:) Ammonium 11.3 4E+02 0.029 22.1 12.2 50 185-234 283-332 (383)
8 d3proc1 d.52.1.1 (C:6-85) Alph 10.5 1.9E+02 0.014 17.9 5.3 42 109-152 3-44 (80)
9 d1q90n_ f.23.27.1 (N:) PetN su 5.7 1.8E+02 0.013 13.6 3.4 22 125-146 7-28 (31)
10 d2yvxa3 f.57.1.1 (A:276-448) M 4.5 2.1E+02 0.015 20.7 2.4 29 139-167 128-156 (173)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=1.8e-37 Score=301.58 Aligned_cols=387 Identities=14% Similarity=0.067 Sum_probs=264.9
Q ss_pred hHHHHHHHHHHHHhhhhhhcccchhhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHH
Q 010721 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (503)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 164 (503)
+|..+..++++.+..+++...++.+.|.++ |+|+ +..+.|++.+++.+++.++++++|+++||+|||+++.++.++.
T Consensus 23 ~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~--s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~ 99 (447)
T d1pw4a_ 23 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGF--SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 99 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTT--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 466677777888888888888888888776 5788 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh----hhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhccCCCCC
Q 010721 165 ILGAIISAQA----HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP 240 (503)
Q Consensus 165 ~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~~~ 240 (503)
+++.++++++ ++++.++++|++.|++.+...+...+++.|++|+++|++++++++.+..+|.++++.+++.+....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 179 (447)
T d1pw4a_ 100 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 179 (447)
T ss_dssp HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred HHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh
Confidence 9999998876 477889999999999999999999999999999999999999999999999999999888766554
Q ss_pred chhHHHHHhhHHHHHHHHHHhcc-ccCChHHHHhcCC----hHHH---HHH-----------HHHHcCCcchHHHHHHHH
Q 010721 241 HWWRTMLYIASLPGFILALGMQF-TVESPRWLCKGGM----LNDA---KAV-----------IANLWGESEINKAIEEFQ 301 (503)
Q Consensus 241 ~~wr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~---~~~-----------~~~~~~~~~~~~~~~~~~ 301 (503)
++||+.|++.+++.++..++.++ .+++|+....... .+.. .+. .+...+.+........
T Consensus 180 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 257 (447)
T d1pw4a_ 180 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIA-- 257 (447)
T ss_dssp CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHH--
T ss_pred hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHH--
Confidence 44999999988877776555544 5555432211100 0000 000 0011111110000000
Q ss_pred HHHHhcCCCCcccchhhhccCccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHh
Q 010721 302 LVIKKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGAT 381 (503)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 381 (503)
.............+...+........ ....+.......+..+++.++.|++.||+++++..........+.........
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (447)
T d1pw4a_ 258 NVFVYLLRYGILDWSPTYLKEVKHFA-LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW 336 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTBSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhhhcchhhhhhhcccccccc-cchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHH
Confidence 00000000000111111111111111 12255667788889999999999999999987655544444333333333222
Q ss_pred cCCCCcchhhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHHHHHHHH-HHHHHHHHHHHHHHcCCcch
Q 010721 382 SLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVC-NFLVGLFFLDLVETFGVAPV 460 (503)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g-~~~~~~~~g~l~~~~g~~~~ 460 (503)
... ..+........+..+....+..+....+..|.+|++.||++.|+.+.+.+++ ..++|.+.|.+.|..|+...
T Consensus 337 ~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~ 412 (447)
T d1pw4a_ 337 MNP----AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGG 412 (447)
T ss_dssp SCC----TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHH
T ss_pred hcc----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence 111 1122222222222222233345666788899999999999999999988875 56688999999999999988
Q ss_pred hHhHHHHHHHHHHHHHhhccC
Q 010721 461 YAGFGGVSLLSALFAYYFIVE 481 (503)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~ 481 (503)
|.+.+++++++.++.+.+.++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~ 433 (447)
T d1pw4a_ 413 FMVMIGGSILAVILLIVVMIG 433 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 888888777777666555443
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.96 E-value=6.9e-29 Score=237.56 Aligned_cols=388 Identities=11% Similarity=-0.024 Sum_probs=252.4
Q ss_pred HHHHHHHHHHHHhhhhhhcccchhhHh-HHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHH
Q 010721 86 FPHVLIASMSNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (503)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 164 (503)
.+..+.+.+..++..+..+...+.+|. +.+++|+ |..++|++.+++.+++.++++++|+++||+|||++++++..+.
T Consensus 6 n~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~--s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~ 83 (417)
T d1pv7a_ 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHI--SKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGM 83 (417)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 344667777778888888888888886 5677899 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHH----HHHHHHHHhhhhhhchhhhhhhhhcCCC--CCccchhhHHHHHHHHHHHHHHHhhccCCC
Q 010721 165 ILGAIISAQAHSLDEM----LWGRFLVGLGIGVNTVLVPIYISEVAPT--KYRGSLGTLCQVGTCLGIITSLFLGIPAED 238 (503)
Q Consensus 165 ~~~~~~~~~~~~~~~l----~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~ig~~~~~~l~~ 238 (503)
.++.++..+..+.... ++.+++.+.+.+...........+..++ +++....+........|..+++.+++.+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 163 (417)
T d1pv7a_ 84 LVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT 163 (417)
T ss_dssp HHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc
Confidence 9999888887666554 4455555555555555544444444332 335667778888889999999999988776
Q ss_pred CCchhHHHHHh-hHHHHHHHHHHhccccCChHHH-----HhcCChHHHHHHHHHHcCCcchHHHHHHHH-HHHHhcCCCC
Q 010721 239 DPHWWRTMLYI-ASLPGFILALGMQFTVESPRWL-----CKGGMLNDAKAVIANLWGESEINKAIEEFQ-LVIKKDGSDL 311 (503)
Q Consensus 239 ~~~~wr~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 311 (503)
.. |+..+.. .....+...+..+..++++... .++.+.....+...+............... ........
T Consensus 164 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 239 (417)
T d1pv7a_ 164 IN--NQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVF-- 239 (417)
T ss_dssp HC--HHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHH--
T ss_pred cc--ccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhcccccccccccccccccccchhhhhHHHHHHHHhh--
Confidence 54 4444444 4444455555556666554311 111111111111112222211111111000 00000000
Q ss_pred cccchhhhccC--ccccchhhhHHHHHHHHHHHHHHHHHhHHHhhcccCCchHHHhhHHHHHHHHHHHHHHhcCCCCcch
Q 010721 312 DSQWSELLEEP--HSRVAFIGDGALASLLVGVTNFAGALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDF 389 (503)
Q Consensus 312 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (503)
.......... ..................++..++..+.+++.||.++|+.+..+..+..++.+.+.+.
T Consensus 240 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--------- 309 (417)
T d1pv7a_ 240 -DQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA--------- 309 (417)
T ss_dssp -HHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred -hccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc---------
Confidence 0000000000 0001111124455667778888999999999999999999998888887777766542
Q ss_pred hhHHHHHHHHHHHHHHhcCccccccccccccCCcccchhhHHHHH-HHHHHHHHHHHHHHHHHHHHcCCcchhHhHHHHH
Q 010721 390 SHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSF-SVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVS 468 (503)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 468 (503)
.+........++.+.......+...+++.|.+|++.|+++.|+.. ....+|..++|.+.|++.|..|++..|++.++++
T Consensus 310 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~ 389 (417)
T d1pv7a_ 310 TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVA 389 (417)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
Confidence 122222222222222222334667788999999999999999865 5567999999999999999999999999999888
Q ss_pred HHHHHHHHhhccCCCCCCHHH
Q 010721 469 LLSALFAYYFIVETKGRSLEE 489 (503)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~ 489 (503)
++..++..+.+++++..+..+
T Consensus 390 ~~~~~~~~~~l~~~~~~~~~r 410 (417)
T d1pv7a_ 390 LGFTLISVFTLSGPGPLSLLR 410 (417)
T ss_dssp HHHHHHHHHHSCCSSCTTHHH
T ss_pred HHHHHHHHHhhcCCCccchhH
Confidence 888887777777666655543
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.54 E-value=2.1e-15 Score=142.73 Aligned_cols=142 Identities=14% Similarity=0.062 Sum_probs=128.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhchhhhhh
Q 010721 122 NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIY 201 (503)
Q Consensus 122 ~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 201 (503)
+....+...+...++..++.++.+++.||+|+|+++.++.++.+++.++..+.++.+.+++..++.|++.+...+...++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 336 (417)
T d1pv7a_ 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 55667888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCccchhhHH-HHHHHHHHHHHHHhhccCCCCCchhHHHHHhhHHHHHHHHHHhccc
Q 010721 202 ISEVAPTKYRGSLGTLC-QVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFT 264 (503)
Q Consensus 202 i~~~~~~~~r~~~~~~~-~~~~~~G~~ig~~~~~~l~~~~~~wr~~~~~~~~~~~~~~~~~~~~ 264 (503)
+.|.+|+++|+++.++. +....+|..++|.+++++.+..+ |+..|++.+++.++..++.+++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~ 399 (417)
T d1pv7a_ 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999975 56788999999999999998888 9999999888887776555543
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.41 E-value=6.6e-13 Score=126.93 Aligned_cols=171 Identities=12% Similarity=0.036 Sum_probs=126.2
Q ss_pred HHHHHHHHhhhhhhcccchhhH-hHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHhHHHHHHH
Q 010721 90 LIASMSNFLFGYHIGVMNGPIV-SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (503)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 168 (503)
+.+.+..++............+ .+.+.++. +..+.++..+.+.++..++.++.|++.||++||+......+...+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 329 (447)
T d1pw4a_ 252 WYIAIANVFVYLLRYGILDWSPTYLKEVKHF--ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT 329 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBTTBSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhcchhhhhhhccccccc--ccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHH
Confidence 3333333433333333333344 44556677 88899999999999999999999999999998765544433333322
Q ss_pred HHHH-----hhhhHHHHHHHHHHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHH-HHHHHHHhhccCCCCCch
Q 010721 169 IISA-----QAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCL-GIITSLFLGIPAEDDPHW 242 (503)
Q Consensus 169 ~~~~-----~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~ig~~~~~~l~~~~~~ 242 (503)
+... ...+.+..+++-++.|++.+...+....++.|.+|+++|+.+.|+.+....+ |.+++|++.+++.+..+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g- 408 (447)
T d1pw4a_ 330 IATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG- 408 (447)
T ss_dssp HHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 2222 1357788888889999999988999999999999999999999998877666 67788999999988888
Q ss_pred hHHHHHhhHHHHHHHHHHhcc
Q 010721 243 WRTMLYIASLPGFILALGMQF 263 (503)
Q Consensus 243 wr~~~~~~~~~~~~~~~~~~~ 263 (503)
|+..|++.++..++..++..+
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~ 429 (447)
T d1pw4a_ 409 WDGGFMVMIGGSILAVILLIV 429 (447)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 999998877777666555544
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=13.19 E-value=74 Score=14.69 Aligned_cols=8 Identities=50% Similarity=0.717 Sum_probs=4.2
Q ss_pred ccccCChH
Q 010721 262 QFTVESPR 269 (503)
Q Consensus 262 ~~~~~~~~ 269 (503)
.|+.|+|+
T Consensus 21 iffreppr 28 (30)
T d2axtt1 21 IFFREPPR 28 (30)
T ss_dssp HHTSCCCC
T ss_pred HHhcCCCC
Confidence 34566553
No 6
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=12.56 E-value=78 Score=18.51 Aligned_cols=6 Identities=0% Similarity=0.085 Sum_probs=2.3
Q ss_pred HHhhcc
Q 010721 475 AYYFIV 480 (503)
Q Consensus 475 ~~~~~~ 480 (503)
.+.+.+
T Consensus 56 ~~~~f~ 61 (64)
T d2iuba2 56 MVVYFK 61 (64)
T ss_dssp HHTTTT
T ss_pred HHHHHh
Confidence 333333
No 7
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=11.31 E-value=4e+02 Score=22.12 Aligned_cols=50 Identities=10% Similarity=0.118 Sum_probs=34.3
Q ss_pred HHHHhhhhhhchhhhhhhhhcCCCCCccchhhHHHHHHHHHHHHHHHhhc
Q 010721 185 FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGI 234 (503)
Q Consensus 185 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~ 234 (503)
++.|+..+........++.+..+-++---+.+++..+..+|.+..++++.
T Consensus 283 ~~iG~i~g~i~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~l~~glfa~ 332 (383)
T d1u7ga_ 283 LIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAA 332 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCCGGGHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHhhccHHHHHHHHHHHhhcccccccceEeehhhhHHHHHHHHHHhcC
Confidence 44455555555555556655555555566888899999999888888764
No 8
>d3proc1 d.52.1.1 (C:6-85) Alpha-lytic protease prodomain {Lysobacter enzymogenes [TaxId: 69]}
Probab=10.55 E-value=1.9e+02 Score=17.87 Aligned_cols=42 Identities=7% Similarity=0.052 Sum_probs=27.7
Q ss_pred hhHhHHHhhCCCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 010721 109 PIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLG 152 (503)
Q Consensus 109 ~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G 152 (503)
++..|+.|+|+ ++.|..--...-.-..-+-.-+-.-+.|+||
T Consensus 3 l~~AmqRDLgL--t~~qa~~RLa~E~~A~~~~~~lr~~lg~~fa 44 (80)
T d3proc1 3 LKFAMQRDLGI--FPTQLPQYLQTEKLARTQAAAIEREFGAQFA 44 (80)
T ss_dssp HHHHHHHHHCC--CGGGHHHHHHHHHHHHHHHHHHHHHHGGGEE
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 35678999999 7777665555555555555555566666654
No 9
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.72 E-value=1.8e+02 Score=13.59 Aligned_cols=22 Identities=9% Similarity=0.049 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 010721 125 LEGLVVSIFIAGAFVGSISSGS 146 (503)
Q Consensus 125 ~~g~~~s~~~~~~~i~~~~~g~ 146 (503)
+++|...+..+.+.+...++|+
T Consensus 7 ~~awaa~~atfsfslslvvwgr 28 (31)
T d1q90n_ 7 QIGWAATCVMFSFSLSLVVWGR 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EhHHHHHHHhheeeEEEEEEec
Confidence 3455555555555555555553
No 10
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=4.46 E-value=2.1e+02 Score=20.74 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=17.4
Q ss_pred HHHHhhhhhhhhhcchHHHHHHhHHHHHH
Q 010721 139 VGSISSGSLADKLGCRRTFQIDTIPLILG 167 (503)
Q Consensus 139 i~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 167 (503)
+.....-.+.+|+|.-+....+-++..+.
T Consensus 128 ~~G~~lPlll~klg~DPA~aS~P~itti~ 156 (173)
T d2yvxa3 128 LVGAMLPFLLRRLGVDPALVSNPLVATLS 156 (173)
T ss_dssp HHHHHHHHHHHHTSCCGGGSCSTTHHHHH
T ss_pred HHHHHHHHHHHHhCCChhhhhhhHHHHHH
Confidence 33344455778888877776655554443
Done!