Query 010722
Match_columns 503
No_of_seqs 144 out of 189
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 12:53:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010722.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010722hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bu3_A ALR0975 protein; phytoc 100.0 3E-81 1E-85 613.6 18.3 216 2-221 31-253 (254)
2 3k8u_A Putative ABC transporte 98.0 2.3E-05 7.9E-10 69.3 10.0 125 46-200 7-131 (156)
3 3b79_A Toxin secretion ATP-bin 97.5 0.00039 1.3E-08 58.8 8.7 114 53-200 4-117 (129)
4 3zua_A CLD, alpha-hemolysin tr 97.4 0.0005 1.7E-08 59.8 8.4 116 50-200 8-123 (142)
5 3erv_A Putative C39-like pepti 97.0 0.0069 2.4E-07 58.9 12.8 148 38-200 30-213 (236)
6 1cv8_A Staphopain; cysteine pr 67.3 23 0.00079 33.3 8.8 114 45-173 13-131 (174)
7 1x9y_A Cysteine proteinase; ha 58.2 32 0.0011 35.6 8.7 111 45-169 198-313 (367)
8 1pxv_A Cysteine protease; hydr 56.6 24 0.00082 33.4 6.9 114 46-173 23-141 (183)
9 3cuq_A Vacuolar-sorting protei 38.3 30 0.001 33.7 4.5 90 62-158 45-147 (234)
10 2jml_A DNA binding domain/tran 31.5 25 0.00087 27.6 2.4 56 59-114 20-77 (81)
11 3gp4_A Transcriptional regulat 28.3 41 0.0014 29.6 3.4 37 77-113 35-71 (142)
12 3bdk_A D-mannonate dehydratase 27.8 2.3E+02 0.0079 28.9 9.4 94 77-173 22-161 (386)
13 2vz4_A Tipal, HTH-type transcr 27.2 28 0.00095 28.9 2.0 43 71-113 28-70 (108)
14 1q06_A Transcriptional regulat 26.2 31 0.001 30.0 2.2 37 77-113 33-69 (135)
15 1r8d_A Transcription activator 25.5 33 0.0011 28.5 2.1 46 68-113 25-71 (109)
16 1tz9_A Mannonate dehydratase; 24.4 1.8E+02 0.0062 28.4 7.6 48 104-151 57-117 (367)
17 3bij_A Uncharacterized protein 24.3 4.7E+02 0.016 25.0 10.8 48 106-153 35-84 (285)
18 3gpv_A Transcriptional regulat 21.8 39 0.0014 29.8 2.0 42 72-113 44-85 (148)
19 2zhg_A Redox-sensitive transcr 20.8 39 0.0013 30.1 1.8 42 71-113 38-79 (154)
20 1ukf_A Avirulence protein AVRP 20.4 1.3E+02 0.0044 28.6 5.3 83 108-202 79-166 (188)
No 1
>2bu3_A ALR0975 protein; phytochelatin synthase, PCS, acyl-enzyme intermedia nostoc, glutathione metabolism, cysteine protease, transfer; HET: 3GC; 1.4A {Anabaena SP} SCOP: d.3.1.14 PDB: 2btw_A* 2btw_B
Probab=100.00 E-value=3e-81 Score=613.60 Aligned_cols=216 Identities=37% Similarity=0.614 Sum_probs=193.0
Q ss_pred cccccccccCCCCCccccCChhhHHHHHHHHhcCCccccccccccccccCCCccccHHHHHHHHHhccCC-CCCCcCCcc
Q 010722 2 AMAGLYRRMLPSPPAIDFASSEGKQLFLEAIQGGTMEGFYRLISYFQTQSEPAYCGLASLSMVLNALAID-PGRKWKGPW 80 (503)
Q Consensus 2 ~~~sfyrR~LP~p~~I~fsS~EGk~Lf~eAl~~g~~e~ff~La~qF~TQ~npayCGvASlamVLNAL~iD-P~r~wkgpw 80 (503)
+|++||+|+||+ ++|+|+|+||++||.+| |+|++||+|++||+||+|++||||||++||||||++| |++.|||||
T Consensus 31 ~~~~~~~~~lp~-~~i~~~S~eG~~ll~~a---~~~~~ff~L~~qf~tQ~n~ayCGlASlaMVLNALgid~P~~~wk~pw 106 (254)
T 2bu3_A 31 HMKLEQTLTLSP-NLIGFNSNEGEKLLLTS---RSREDFFPLSMQFVTQVNQAYCGVASIIMVLNSLGINAPETAQYSPY 106 (254)
T ss_dssp ---------CCT-TCEETTSHHHHHHHHHC---SBCTTHHHHHHHCCCCSSTTCHHHHHHHHHHHHTTCCC--------C
T ss_pred hhhhccccCCCh-hhccccCHHHHHHHHhC---CCchhhhcccccccccCCCCchHHHHHHHHHHhhCCCCCCccccCce
Confidence 578999999995 89999999999999998 8999999999999999999999999999999999999 999999999
Q ss_pred ccc-ccchhc-----cccchHHHhhcCCCHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHhcCCCceEEEEeeccc
Q 010722 81 RWF-DESMLD-----CCEPLEKVKEKGISFGKLVCLAHCAGAKVEAFRTNQSTIDDFRKYIIRCSASEDCHVISSYHRGA 154 (503)
Q Consensus 81 rwf-~e~mLd-----cc~~le~V~~~GiTL~Ela~LA~c~G~~V~~~ra~~~sldeFR~~v~~~~ss~d~~vIVNy~R~~ 154 (503)
||| +|+||+ ||.+++.|+++||||+||+|||+|+|++|++|++++.++++||+.|++++++++++|||||+|++
T Consensus 107 r~~Tqe~mld~~~~~~~~~~~~v~~~GiTL~el~~La~c~G~~v~~y~a~~~sl~~fR~~v~~~~~~~~~~vvvny~R~~ 186 (254)
T 2bu3_A 107 RVFTQDNFFSNEKTKAVIAPEVVARQGMTLDELGRLIASYGVKVKVNHASDTNIEDFRKQVAENLKQDGNFVIVNYLRKE 186 (254)
T ss_dssp CCCCTTTTTC---CTTTSCHHHHHHHCCCHHHHHHHHHTTTCEEEEEEGGGSCHHHHHHHHHHHHTCTTEEEEEEEEGGG
T ss_pred eeechHhHhcccccccccChhhhccCCcCHHHHHHHHHhCCceEEEEECCcCcHHHHHHHHHHHhCCCCcEEEEEeEccc
Confidence 999 679998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccccccceeecCCCeEEEEecCCCCCCceeeehHHHHHhccccCCcCCceeeEEEEeCCCC
Q 010722 155 FKQTGTGHFSPIGGYHAGRDMALILDVARFKYPPHWVPLTLLWEAMDRVDDATGQRRGFVLVSRPHR 221 (503)
Q Consensus 155 LgQtG~GHFSPIGGYh~~tD~VLILDVARfKYPP~WVpl~~L~eAM~tiD~~SgksRG~ilIs~~~~ 221 (503)
|||+|+||||||||||+++|+||||||||||||||||++++||+||+++|++|||+||||+|++.++
T Consensus 187 l~q~G~GHfSPIggY~~~~D~vLIlDVar~kYpp~WV~~~~L~~Am~~~D~~s~~~RG~~li~~~~~ 253 (254)
T 2bu3_A 187 IGQERGGHISPLAAYNEQTDRFLIMDVSRYKYPPVWVKTTDLWKAMNTVDSVSQKTRGFVFVSKTQD 253 (254)
T ss_dssp GTCSSSEEEEEEEEEETTTTEEEECCSCTTTCCCEEEEHHHHHHHHSSEETTTTEECEEEEEEC---
T ss_pred cCCCCCCceeceeeEcCCCCeEEEEecCccCCCCEeeeHHHHHHHHhcccccCCCcceEEEEecccC
Confidence 9999999999999999999999999999999999999999999999999999999999999998763
No 2
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=98.03 E-value=2.3e-05 Score=69.35 Aligned_cols=125 Identities=14% Similarity=0.132 Sum_probs=88.7
Q ss_pred cccccCCCccccHHHHHHHHHhccCCCCCCcCCcccccccchhccccchHHHhhcCCCHHHHHHHHHHcCCeEEEEeCCC
Q 010722 46 YFQTQSEPAYCGLASLSMVLNALAIDPGRKWKGPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHCAGAKVEAFRTNQ 125 (503)
Q Consensus 46 qF~TQ~npayCGvASlamVLNAL~iDP~r~wkgpwrwf~e~mLdcc~~le~V~~~GiTL~Ela~LA~c~G~~V~~~ra~~ 125 (503)
-|..|.+..-||+|+++|+++-.|++-+.. .+.+.+ .+.+.|+|+.++...|+..|++++.++.+
T Consensus 7 p~~~Q~~~~dcglacLa~i~~~~g~~~s~~----------~L~~~~----~~~~~g~s~~~l~~~a~~~Gl~a~~~~~~- 71 (156)
T 3k8u_A 7 KLVPQIDTRDCGPAVLASVAKHYGSNYSIA----------YLRELS----KTNKQGTTALGIVEAAKKLGFETRSIKAD- 71 (156)
T ss_dssp CCCCCSSTTCHHHHHHHHHHHHTTCCCCHH----------HHHHHT----TCBTTBCCHHHHHHHHHHTTEEEEEEECC-
T ss_pred ceEECCCCCCHHHHHHHHHHHHhCCCCCHH----------HHHHHc----CCCCCCcCHHHHHHHHHHCCCeeEEEEee-
Confidence 456799999999999999999998653321 111111 12468999999999999999999998854
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEeecccccccCCccccccceeecCCCeEEEEecCCCCCCceeeehHHHHHhc
Q 010722 126 STIDDFRKYIIRCSASEDCHVISSYHRGAFKQTGTGHFSPIGGYHAGRDMALILDVARFKYPPHWVPLTLLWEAM 200 (503)
Q Consensus 126 ~sldeFR~~v~~~~ss~d~~vIVNy~R~~LgQtG~GHFSPIGGYh~~tD~VLILDVARfKYPP~WVpl~~L~eAM 200 (503)
++.|+ + ..-.-++|+...+. .|.|||--|.+++ .+.|+|.|++.- -.+.+++.++|-+.-
T Consensus 72 --~~~~~--l----~~~~lP~I~~~~~~----g~~~hfvVl~~~~--~~~v~I~DP~~g-~~~~~ls~~ef~~~w 131 (156)
T 3k8u_A 72 --MTLFD--Y----NDLTYPFIVHVIKG----KRLQHYYVVYGSQ--NNQLIIGDPDPS-VKVTRMSKERFQSEW 131 (156)
T ss_dssp --GGGGG--C----TTCCSCEEEEEEET----TEEEEEEEEEEEE--TTEEEEEECSTT-TEEEEEEHHHHHHHE
T ss_pred --hhhhh--H----hcCCCCEEEEEEec----CCCcEEEEEEEEc--CCEEEEEcCCCC-cceEEEcHHHHHhhC
Confidence 33221 1 12344777766432 1358999998887 578999999742 138999999976654
No 3
>3b79_A Toxin secretion ATP-binding protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.37A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.49 E-value=0.00039 Score=58.79 Aligned_cols=114 Identities=15% Similarity=0.081 Sum_probs=82.3
Q ss_pred CccccHHHHHHHHHhccCCCCCCcCCcccccccchhccccchHHHhhcCCCHHHHHHHHHHcCCeEEEEeCCCCCHHHHH
Q 010722 53 PAYCGLASLSMVLNALAIDPGRKWKGPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHCAGAKVEAFRTNQSTIDDFR 132 (503)
Q Consensus 53 payCGvASlamVLNAL~iDP~r~wkgpwrwf~e~mLdcc~~le~V~~~GiTL~Ela~LA~c~G~~V~~~ra~~~sldeFR 132 (503)
..-||+|+++|+++-.|++-+.. .+...+ .....|+|+.++...|+..|++++.++.+ ++++.
T Consensus 4 ~~dcgla~L~~i~~~~g~~~~~~----------~l~~~~----~~~~~g~s~~~l~~~a~~~Gl~~~~~~~~---~~~L~ 66 (129)
T 3b79_A 4 MKDPLLNSLIYVSRYYGLANSPE----------ALVNGL----PLSDGKLTPFLLPRAAERAGLVAKENRAE---LEKIS 66 (129)
T ss_dssp CCCHHHHHHHHHHHHTTCCCCHH----------HHHTTC----CCBTTBCCTTTHHHHHHHHTEEEEEEECC---GGGSC
T ss_pred cCCcHHHHHHHHHHHhCCCCCHH----------HHHhcC----CCcCCCCCHHHHHHHHHHCCCeEEEEECC---HHHCC
Confidence 45799999999999998764432 121211 12357999999999999999999998854 33332
Q ss_pred HHHHHHhcCCCceEEEEeecccccccCCccccccceeecCCCeEEEEecCCCCCCceeeehHHHHHhc
Q 010722 133 KYIIRCSASEDCHVISSYHRGAFKQTGTGHFSPIGGYHAGRDMALILDVARFKYPPHWVPLTLLWEAM 200 (503)
Q Consensus 133 ~~v~~~~ss~d~~vIVNy~R~~LgQtG~GHFSPIGGYh~~tD~VLILDVARfKYPP~WVpl~~L~eAM 200 (503)
+ . .-+.|+... .|||--|.+++.++..++|.|++. ...+.+++.++|-+.-
T Consensus 67 ~-----l---~lP~I~~~~--------~~h~vVl~~~~~~~~~~~i~dp~~-~~g~~~~~~~ef~~~w 117 (129)
T 3b79_A 67 S-----L---ILPAILVLK--------GGDSCVLNSINMETREAEVTTLES-GMVPISIPLEDLLEQY 117 (129)
T ss_dssp G-----G---GCSEEEEEG--------GGEEEEEEEEETTTTEEEEECTTT-TTSCEEEEHHHHHHHE
T ss_pred c-----C---CCCEEEEEc--------CCCEEEEEEEcCCCceEEEEccCC-CCCcEEeeHHHHHhhC
Confidence 1 1 135666553 369999999998766899999862 3468999999986644
No 4
>3zua_A CLD, alpha-hemolysin translocation ATP-binding protein; C39 peptidase-like domain, ABC transporter, haemolysin, HYDR heteronuclear; NMR {Escherichia coli}
Probab=97.39 E-value=0.0005 Score=59.82 Aligned_cols=116 Identities=14% Similarity=0.152 Sum_probs=81.5
Q ss_pred cCCCccccHHHHHHHHHhccCCCCCCcCCcccccccchhccccchHHHhhcCCCHHHHHHHHHHcCCeEEEEeCCCCCHH
Q 010722 50 QSEPAYCGLASLSMVLNALAIDPGRKWKGPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHCAGAKVEAFRTNQSTID 129 (503)
Q Consensus 50 Q~npayCGvASlamVLNAL~iDP~r~wkgpwrwf~e~mLdcc~~le~V~~~GiTL~Ela~LA~c~G~~V~~~ra~~~sld 129 (503)
|.+..-||+|+++|+++-.|++-+.. .+...+ .+.+.|+|+.++...|+..|++++.++. +++
T Consensus 8 ~~~~~dcglacLa~i~~~~g~~~s~~----------~L~~~~----~~~~~g~s~~~l~~aa~~~Gl~a~~~~~---~~~ 70 (142)
T 3zua_A 8 SCHKIDYGLYALEILAQYHNVSVNPE----------EIKHRF----DTDGTGLGLTSWLLAAKSLELKVKQVKK---TID 70 (142)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCCCCHH----------HHHHHT----CTTSSCCCHHHHHHHHHTTTEEEEEEEC---CHH
T ss_pred CCCCCCcHHHHHHHHHHHcCCCCCHH----------HHHHHc----CCCcCCcCHHHHHHHHHHCCCeeEEeec---CHH
Confidence 56667899999999999998653331 111111 1346899999999999999999999885 455
Q ss_pred HHHHHHHHHhcCCCceEEEEeecccccccCCccccccceeecCCCeEEEEecCCCCCCceeeehHHHHHhc
Q 010722 130 DFRKYIIRCSASEDCHVISSYHRGAFKQTGTGHFSPIGGYHAGRDMALILDVARFKYPPHWVPLTLLWEAM 200 (503)
Q Consensus 130 eFR~~v~~~~ss~d~~vIVNy~R~~LgQtG~GHFSPIGGYh~~tD~VLILDVARfKYPP~WVpl~~L~eAM 200 (503)
++.+ -.-..|+.. .++.||- |.+++.+.+.++|.|++.-+ +.+++.++|-+.-
T Consensus 71 ~L~~--------l~lP~Il~~-------~~g~~~V-v~~~~~~~~~~~I~dP~~g~--~~~~s~~ef~~~w 123 (142)
T 3zua_A 71 RLNF--------ISLPALVWR-------EDGRHFI-LTKVSKEANRYLIFDLEQRN--PRVLEQSEFEALY 123 (142)
T ss_dssp HHTT--------SSSSEEECC-------TTSCCEE-EEEEETTTTEEEEEETTTTE--EEEEEHHHHHHHC
T ss_pred HHhc--------CCCCEEEEE-------cCCCEEE-EEEEeCCCCEEEEEcCCCCC--cEEecHHHHHhhC
Confidence 4432 233566632 2334665 45688777899999997532 8999999986654
No 5
>3erv_A Putative C39-like peptidase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Bacillus anthracis}
Probab=97.01 E-value=0.0069 Score=58.88 Aligned_cols=148 Identities=20% Similarity=0.133 Sum_probs=90.7
Q ss_pred cccccccccccccCC--CccccHHHHHHHHHhccCCCCCC-----c-CCc----------ccccccchhccccchHHHhh
Q 010722 38 EGFYRLISYFQTQSE--PAYCGLASLSMVLNALAIDPGRK-----W-KGP----------WRWFDESMLDCCEPLEKVKE 99 (503)
Q Consensus 38 e~ff~La~qF~TQ~n--payCGvASlamVLNAL~iDP~r~-----w-kgp----------wrwf~e~mLdcc~~le~V~~ 99 (503)
+.+.-|.--|..|.. +.-|++||++|+|+..|++.... + +-| .+=|--++... .-..
T Consensus 30 ~~~~ll~Vp~~~Q~~~~~~gCe~tSlam~L~y~G~~~~~~~la~~l~~~p~~~~g~~gnP~~gFvG~p~~~-----~~~g 104 (236)
T 3erv_A 30 EKVILSNVPFIQQLPELDRGCEVTSLAMMLQYAGITVDKMKLANEIKKVDFMNDGVRGNPNEGFVGNIYTF-----SESG 104 (236)
T ss_dssp CCEECTTSCCCCCTTTCTTCHHHHHHHHHHHHTTCCCCHHHHHHHSCEECSEETTEECCTTTSEEBCSSCT-----TSCB
T ss_pred CceEEeCCCccccCCCCCCCCHHHHHHHHHHHcCcCCCHHHHHHHHhhCcccccCCCCCCccCccCCcccc-----CCCc
Confidence 344445555556654 68899999999999999874321 1 112 22222222110 0112
Q ss_pred cCCCHHHHHHHHHHcC-CeEEEEeCCCCCHHHHHHHHHHHhcCCCceEEEEeec--ccc------------cc---cCCc
Q 010722 100 KGISFGKLVCLAHCAG-AKVEAFRTNQSTIDDFRKYIIRCSASEDCHVISSYHR--GAF------------KQ---TGTG 161 (503)
Q Consensus 100 ~GiTL~Ela~LA~c~G-~~V~~~ra~~~sldeFR~~v~~~~ss~d~~vIVNy~R--~~L------------gQ---tG~G 161 (503)
.|+--..|..+|+..+ .. ++.-...+++++.+.|. .+..|||-... +.+ |. +..+
T Consensus 105 ~giy~~~i~~~a~~y~~~~--~~dltG~sl~~L~~~I~-----~G~PVIv~~t~~~~p~~~~~~~~W~~~~G~~~~~~~~ 177 (236)
T 3erv_A 105 YGVYHGPLFQLAKKYLPNK--AVDLTGKSIEELYKSVK-----AGQPVVIITNATFAPLDEDEFTTWETNNGDVSITYNE 177 (236)
T ss_dssp CCCCHHHHHHHHHHHCTTT--EEECTTSCHHHHHHHHH-----TTCCEEEEEETTSSCCCGGGCEEEEETTEEEEECTTE
T ss_pred ceeecHHHHHHHHHHhhcc--eeecCCCCHHHHHHHHH-----CCCeEEEEEeCCcccccccccceeecCCCceeeccCC
Confidence 4666678899998875 23 23334568888887774 45677773221 111 10 2467
Q ss_pred cccccceeecCCCeEEEEecCCCCCCceeeehHHHHHhc
Q 010722 162 HFSPIGGYHAGRDMALILDVARFKYPPHWVPLTLLWEAM 200 (503)
Q Consensus 162 HFSPIGGYh~~tD~VLILDVARfKYPP~WVpl~~L~eAM 200 (503)
||--|-|||. +.|.|.|++.- ...++++.+++-++-
T Consensus 178 H~VVl~GYd~--~~vyi~DP~~g-~~~~~vs~~eFe~~w 213 (236)
T 3erv_A 178 HCVVLIGYDQ--ESVYIRDPLKD-SLDVKVPREKFEQAW 213 (236)
T ss_dssp EEEEEEEECS--SEEEEECTTSC-CSCCEEEHHHHHHHH
T ss_pred eEEEEEEEeC--CEEEEECCCCC-CccEEEcHHHHHHHH
Confidence 9999999998 69999999863 245889977754443
No 6
>1cv8_A Staphopain; cysteine protease, thiol protease, papain family; HET: E64; 1.75A {Staphylococcus aureus} SCOP: d.3.1.1
Probab=67.31 E-value=23 Score=33.30 Aligned_cols=114 Identities=13% Similarity=0.190 Sum_probs=82.3
Q ss_pred ccccccCCCccccHHHHHHHHHhccCCCCCCcCCcccccccchhccc---cchHHHhhcCCCHHHHHHHHHHcCCeEEEE
Q 010722 45 SYFQTQSEPAYCGLASLSMVLNALAIDPGRKWKGPWRWFDESMLDCC---EPLEKVKEKGISFGKLVCLAHCAGAKVEAF 121 (503)
Q Consensus 45 ~qF~TQ~npayCGvASlamVLNAL~iDP~r~wkgpwrwf~e~mLdcc---~~le~V~~~GiTL~Ela~LA~c~G~~V~~~ 121 (503)
.-.+||-+...|.==+++.+||++.-- . ...-++|+..- .+.+.....|+|.+|+-..++..|..++ +
T Consensus 13 ~I~ETQg~~pWCa~Ya~aailN~~~~~---~-----~~~A~~imr~~yPn~S~~~l~~~~~t~~e~iky~~s~g~~~~-~ 83 (174)
T 1cv8_A 13 KIRETQGNNGWCAGYTMSALLNATYNT---N-----KYHAEAVMRFLHPNLQGQQFQFTGLTPREMIYFGQTQGRSPQ-L 83 (174)
T ss_dssp CCCCCCCSSSCHHHHHHHHHHHHHHTC---C-----CCCHHHHHHHHCSSCCHHHHHHCCCCHHHHHHHHHHTTCCCE-E
T ss_pred EEeeccCCCchHHHHHHHHHHHhhhcc---C-----cCCHHHHHHHHCCCCCHHHHhhcCCCHHHHHHHHHHcCCChh-h
Confidence 346799999999999999999999621 1 12234455422 2345677899999999999999987554 4
Q ss_pred eCCCCCHHHHHHHHHHHhcCCCceEEEEeeccccccc--CCccccccceeecCC
Q 010722 122 RTNQSTIDDFRKYIIRCSASEDCHVISSYHRGAFKQT--GTGHFSPIGGYHAGR 173 (503)
Q Consensus 122 ra~~~sldeFR~~v~~~~ss~d~~vIVNy~R~~LgQt--G~GHFSPIGGYh~~t 173 (503)
...-.|+++..+.+. +++.+.++=+|-. .++ -.||=--|.||-...
T Consensus 84 ~n~~ls~~eV~~~~~-----~nk~i~i~~~~ve-~~~~~~~gHAlav~Gy~~~~ 131 (174)
T 1cv8_A 84 LNRMTTYNEVDNLTK-----NNKGIAILGSRVE-SRNGMHAGHAMAVVGNAKLN 131 (174)
T ss_dssp ESSCCCHHHHHHHHH-----TTCCEEEEEEESS-CBTTBCCEEEEEEEEEEEET
T ss_pred hcCCCCHHHHHHHHh-----cCCceEEEccccc-CCCCCCCceeEEEEeeeeec
Confidence 455689999887764 5567777777763 344 478988888998754
No 7
>1x9y_A Cysteine proteinase; half-barrel, barrel-sandwich-hybrid, hydrolase; 2.50A {Staphylococcus aureus} SCOP: d.3.1.1 d.17.1.4
Probab=58.23 E-value=32 Score=35.64 Aligned_cols=111 Identities=9% Similarity=0.163 Sum_probs=80.3
Q ss_pred ccccccCCCccccHHHHHHHHHhccCCCCCCcCCcccccccchhccc---cchHHHhhcCCCHHHHHHHHHHcCCeEEEE
Q 010722 45 SYFQTQSEPAYCGLASLSMVLNALAIDPGRKWKGPWRWFDESMLDCC---EPLEKVKEKGISFGKLVCLAHCAGAKVEAF 121 (503)
Q Consensus 45 ~qF~TQ~npayCGvASlamVLNAL~iDP~r~wkgpwrwf~e~mLdcc---~~le~V~~~GiTL~Ela~LA~c~G~~V~~~ 121 (503)
.-.+||-+..+|.=-+++.+||++.-- . .+.-+.|+..- .+.+.....|++++|.-..++..|..++ +
T Consensus 198 ~I~ETQg~~pWCa~Ya~aailN~~~~t---~-----~~nA~~iMr~~yPN~S~~~l~~ts~~~~q~Iky~qsyG~~~~-~ 268 (367)
T 1x9y_A 198 KIREQQFDNSWCAGFSMAALLNATKNT---D-----TYNAHDIMRTLYPEVSEQDLPNCATFPNQMIEYGKSQGRDIH-Y 268 (367)
T ss_dssp CCCCCCSSSSCHHHHHHHHHHHHHTTC---S-----CCCHHHHHHHHCTTSCTTTGGGCCCCHHHHHHHHHHTTEEEE-E
T ss_pred EeeeccCCCchHHHHHHHHHHHhhhcc---C-----cCCHHHHHHHHCCCCChhHHhhcCCCHHHHHHHHHHhCcchh-h
Confidence 456799999999999999999999621 1 12234454322 2234566799999999999999998765 4
Q ss_pred eCCCCCHHHHHHHHHHHhcCCCceEEEEeeccccccc--CCcccccccee
Q 010722 122 RTNQSTIDDFRKYIIRCSASEDCHVISSYHRGAFKQT--GTGHFSPIGGY 169 (503)
Q Consensus 122 ra~~~sldeFR~~v~~~~ss~d~~vIVNy~R~~LgQt--G~GHFSPIGGY 169 (503)
.....++++..+.+. .++.++|.-++..=... -.||---|.||
T Consensus 269 ~n~~ls~deVk~~id-----~Nk~I~v~~~~v~~~~n~~~~gHAlavvGy 313 (367)
T 1x9y_A 269 QEGVPSYNQVDQLTK-----DNVGIMILAQSVSQNPNDPHLGHALAVVGN 313 (367)
T ss_dssp EESCCCHHHHHHHHH-----TTCCEEEEEEETTSCSSSCCCSEEEEEEEE
T ss_pred hcCCCCHHHHHHHHh-----cCCcEEEEccccccCCCCccCceeEEEEec
Confidence 555689999887775 45678888777422333 37898888899
No 8
>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP: d.3.1.1 PDB: 1y4h_A
Probab=56.60 E-value=24 Score=33.43 Aligned_cols=114 Identities=8% Similarity=0.088 Sum_probs=80.3
Q ss_pred cccccCCCccccHHHHHHHHHhccCCCCCCcCCcccccccchhccc---cchHHHhhcCCCHHHHHHHHHHcCCeEEEEe
Q 010722 46 YFQTQSEPAYCGLASLSMVLNALAIDPGRKWKGPWRWFDESMLDCC---EPLEKVKEKGISFGKLVCLAHCAGAKVEAFR 122 (503)
Q Consensus 46 qF~TQ~npayCGvASlamVLNAL~iDP~r~wkgpwrwf~e~mLdcc---~~le~V~~~GiTL~Ela~LA~c~G~~V~~~r 122 (503)
-.+||-....|.=-+++.+||+..-- + .+.-++|+..- .+.+.....|+|.+|.-..++..|...+. .
T Consensus 23 I~ETQg~~~WCa~Y~~aAilN~~~nt-~-------~~nA~~iMr~~yPN~s~~~l~~t~~~~~q~Iky~~s~G~~~~~-~ 93 (183)
T 1pxv_A 23 IREQQFDNSWAAGFSMAALLNATKNT-D-------TYNAHDIMRTLYPEVSEQDLPNCATFPNQMIEYGKSQGRDIHY-Q 93 (183)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHHTC-S-------CCCHHHHHHHHSTTSCTTTGGGCCBCHHHHHHHHHHTTCCCEE-E
T ss_pred eeeccCcCchHHHHHHHHHHHhhhcc-C-------cCCHHHHHHHHCCCCChhHHhhcCCCHHHHHHHHHHcCcChhH-h
Confidence 45799999999999999999999621 1 11223333221 12245677999999999999999987654 3
Q ss_pred CCCCCHHHHHHHHHHHhcCCCceEEEEeeccccccc--CCccccccceeecCC
Q 010722 123 TNQSTIDDFRKYIIRCSASEDCHVISSYHRGAFKQT--GTGHFSPIGGYHAGR 173 (503)
Q Consensus 123 a~~~sldeFR~~v~~~~ss~d~~vIVNy~R~~LgQt--G~GHFSPIGGYh~~t 173 (503)
....|+++..+.+. .++.+.+.=++..=.++ -.||---|.||-...
T Consensus 94 nr~ls~neV~~~i~-----~Nk~I~v~~~~v~e~~~~~~~gHA~av~Gya~~~ 141 (183)
T 1pxv_A 94 EGVPSYNQVDQLTK-----DNVGIMILAQSVSQNPNDPHLGHALAVVGNAKIN 141 (183)
T ss_dssp ESCCCHHHHHHHHH-----TTCCEEEEEECCCSSTTSCCCEEEEEEEEEEEET
T ss_pred cCCCCHHHHHHHHh-----cCCcEEEEccccccCCCCccCceeEEEEeeeecC
Confidence 44689999888875 45577777666433444 378988888887655
No 9
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=38.28 E-value=30 Score=33.74 Aligned_cols=90 Identities=19% Similarity=0.270 Sum_probs=57.7
Q ss_pred HHHHHhccCCCCCCcCCcc-------ccccc---chhccccchHHHhhc-C-CCHHHHHHHH-HHcCCeEEEEeCCCCCH
Q 010722 62 SMVLNALAIDPGRKWKGPW-------RWFDE---SMLDCCEPLEKVKEK-G-ISFGKLVCLA-HCAGAKVEAFRTNQSTI 128 (503)
Q Consensus 62 amVLNAL~iDP~r~wkgpw-------rwf~e---~mLdcc~~le~V~~~-G-iTL~Ela~LA-~c~G~~V~~~ra~~~sl 128 (503)
.-.+.++||||-..-||-| .||-| .+.+.|.. ...+. | |+|.++.|.. +..|... ...|-
T Consensus 45 ~~mc~siGVDPlas~kg~ws~~lG~gdfy~eLavqIvEvC~~--tr~~nGGli~L~el~~~~~r~Rg~~~-----~~IS~ 117 (234)
T 3cuq_A 45 QDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLA--LKHRNGGLITLEELHQQVLKGRGKFA-----QDVSQ 117 (234)
T ss_dssp HHHHHHHTCCTTSCTTSHHHHHHCHHHHHHHHHHHHHHHHHH--HHHHHSSEEEHHHHHHHHHHTTTTCC-----SSCCH
T ss_pred HHHHHHcCCCcccCCcchhhhhcCcchHHHHHHHHHHHHHHH--HHHhcCCeeEHHHHHHHHHHhcCCcc-----CccCH
Confidence 3457899999976667766 45555 45566653 22333 4 9999999988 4456421 46899
Q ss_pred HHHHHHHHHHhcCCCceEEEEeeccccccc
Q 010722 129 DDFRKYIIRCSASEDCHVISSYHRGAFKQT 158 (503)
Q Consensus 129 deFR~~v~~~~ss~d~~vIVNy~R~~LgQt 158 (503)
|+..+.++..-.=.+.+-|+.|..+.+-|.
T Consensus 118 dDi~rAik~L~~LG~g~~v~~~~g~~~VqS 147 (234)
T 3cuq_A 118 DDLIRAIKKLKALGTGFGIIPVGGTYLIQS 147 (234)
T ss_dssp HHHHHHHHHHGGGBTTCEEEEETTEEEEEC
T ss_pred HHHHHHHHHHHhcCCCeEEEEECCEEEEEe
Confidence 999999986532123377777764444444
No 10
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=31.49 E-value=25 Score=27.61 Aligned_cols=56 Identities=14% Similarity=0.257 Sum_probs=34.7
Q ss_pred HHHHHHHHhccC-CCCCCcCCcccccccchhccccchHHHh-hcCCCHHHHHHHHHHc
Q 010722 59 ASLSMVLNALAI-DPGRKWKGPWRWFDESMLDCCEPLEKVK-EKGISFGKLVCLAHCA 114 (503)
Q Consensus 59 ASlamVLNAL~i-DP~r~wkgpwrwf~e~mLdcc~~le~V~-~~GiTL~Ela~LA~c~ 114 (503)
.|+..--.-.++ .|.+.-.+.+|+|++.-+..-.-+...+ +.|++++|+..++...
T Consensus 20 ~tlR~ye~~~gl~~p~r~~~~g~R~Y~~~dl~~l~~I~~l~~~~G~sl~ei~~~l~~~ 77 (81)
T 2jml_A 20 ATLRAWERRYGFPRPLRSEGNNYRVYSREEVEAVRRVARLIQEEGLSVSEAIAQVKTE 77 (81)
T ss_dssp HHHHHHHHHTCCSCCBSSSCSSSCEECHHHHHHHHHHHHHHHHTSTHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcCCCCCCeeecCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHcc
Confidence 344443333233 4555532668999876555433345567 8999999999887654
No 11
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=28.33 E-value=41 Score=29.63 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=27.9
Q ss_pred CCcccccccchhccccchHHHhhcCCCHHHHHHHHHH
Q 010722 77 KGPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHC 113 (503)
Q Consensus 77 kgpwrwf~e~mLdcc~~le~V~~~GiTL~Ela~LA~c 113 (503)
.+.+|+|++.-+..-.-+...+..|++++++..++..
T Consensus 35 ~~g~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~~ 71 (142)
T 3gp4_A 35 ESGVRKFGAEDLRWILFTRQMRRAGLSIEALIDYLAL 71 (142)
T ss_dssp TTSCBCBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCeeeCHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5679999986665444445568899999999988764
No 12
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=27.79 E-value=2.3e+02 Score=28.92 Aligned_cols=94 Identities=20% Similarity=0.356 Sum_probs=50.3
Q ss_pred CCcccccccchhccccchHHHhhc-CCC-------------------HHHHHHHHHHcCCeEEEEeC-----C-------
Q 010722 77 KGPWRWFDESMLDCCEPLEKVKEK-GIS-------------------FGKLVCLAHCAGAKVEAFRT-----N------- 124 (503)
Q Consensus 77 kgpwrwf~e~mLdcc~~le~V~~~-GiT-------------------L~Ela~LA~c~G~~V~~~ra-----~------- 124 (503)
+--||||...- -+.++.+++. |.+ ..++..+++.+|+++.+... +
T Consensus 22 ~~~~rW~g~~d---~~~L~~i~q~~G~~gIe~~l~~~~~g~~w~~~~i~~lk~~l~~~GL~i~~i~s~~~~~~i~~~~~~ 98 (386)
T 3bdk_A 22 KMSFRWYGKKD---PVTLEEIKAIPGMQGIVTAVYDVPVGQAWPLENILELKKMVEEAGLEITVIESIPVHEDIKQGKPN 98 (386)
T ss_dssp CCCCBCCCTTC---SSCHHHHHTSTTCCEEEECCCSSCSSSCCCHHHHHHHHHHHHTTTCEEEEEECCCCCHHHHTTCTT
T ss_pred hcEEEecCCCC---HHHHHHHHhcCCCCEEEeCCcccCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccccccCcHH
Confidence 44589986421 2245556665 533 23455667788998876531 1
Q ss_pred -CCCHHHHHHHHHHHhcCCCceEEEEee------ccccc-ccCCcc----c--cccceeecCC
Q 010722 125 -QSTIDDFRKYIIRCSASEDCHVISSYH------RGAFK-QTGTGH----F--SPIGGYHAGR 173 (503)
Q Consensus 125 -~~sldeFR~~v~~~~ss~d~~vIVNy~------R~~Lg-QtG~GH----F--SPIGGYh~~t 173 (503)
+..++.|++.|..+..-.-..|..||. |..+. ...+|. | .++++||+..
T Consensus 99 r~~~ie~~k~~i~~aa~lGi~~v~~nf~p~~~w~rt~~~~~~~~G~~~~~f~~~~~~~~d~~~ 161 (386)
T 3bdk_A 99 RDALIENYKTSIRNVGAAGIPVVCYNFMPVFDWTRSDLHHPLPDGSTSLAFLKSDLAGVDPVA 161 (386)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEECCCSSCSCCCSEEEEECTTSCEEEEEEGGGGSSCCC--
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcCcccccccccccccccCCCccccccchhhhhcccchh
Confidence 124566777777654333335555765 54442 112332 3 5778887654
No 13
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=27.25 E-value=28 Score=28.93 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=29.2
Q ss_pred CCCCCcCCcccccccchhccccchHHHhhcCCCHHHHHHHHHH
Q 010722 71 DPGRKWKGPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHC 113 (503)
Q Consensus 71 DP~r~wkgpwrwf~e~mLdcc~~le~V~~~GiTL~Ela~LA~c 113 (503)
.|.+.-.+.+|+|+++-+..-.-+...++.|++++++..++..
T Consensus 28 ~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~~I~~~l~~ 70 (108)
T 2vz4_A 28 VPSERSHAGHRRYSDADLDRLQQILFYRELGFPLDEVAALLDD 70 (108)
T ss_dssp CCSEECSSCCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHTC
T ss_pred CCCccCCCCCeecCHHHHHHHHHHHHHHHCCCCHHHHHHHHhC
Confidence 3444235678999876554333334457899999999998864
No 14
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=26.21 E-value=31 Score=30.00 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=27.3
Q ss_pred CCcccccccchhccccchHHHhhcCCCHHHHHHHHHH
Q 010722 77 KGPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHC 113 (503)
Q Consensus 77 kgpwrwf~e~mLdcc~~le~V~~~GiTL~Ela~LA~c 113 (503)
.+.+|+|+++-+..-.-+...+..|++++|+..++..
T Consensus 33 ~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~eI~~~l~~ 69 (135)
T 1q06_A 33 ENGYRTYTQQHLNELTLLRQARQVGFNLEESGELVNL 69 (135)
T ss_dssp TTSCEECCHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 5679999986655333334567899999999988864
No 15
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=25.49 E-value=33 Score=28.49 Aligned_cols=46 Identities=13% Similarity=0.284 Sum_probs=30.1
Q ss_pred ccC-CCCCCcCCcccccccchhccccchHHHhhcCCCHHHHHHHHHH
Q 010722 68 LAI-DPGRKWKGPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHC 113 (503)
Q Consensus 68 L~i-DP~r~wkgpwrwf~e~mLdcc~~le~V~~~GiTL~Ela~LA~c 113 (503)
.|. .|.+.-.+.+|+|+++-+..-.-+...+..|++++++..++..
T Consensus 25 ~Gll~p~~~~~~g~R~Y~~~dl~~l~~I~~l~~~G~~l~~I~~~l~~ 71 (109)
T 1r8d_A 25 IELLNPSALTDAGYRLYSDADLERLQQILFFKEIGFRLDEIKEMLDH 71 (109)
T ss_dssp TTSSCCSEECTTCCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHC
T ss_pred CCCCCCCeECCCCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHhC
Confidence 344 3444235678999876554333334457889999999988864
No 16
>1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium; 2.90A {Enterococcus faecalis} SCOP: c.1.15.6
Probab=24.40 E-value=1.8e+02 Score=28.41 Aligned_cols=48 Identities=15% Similarity=0.129 Sum_probs=28.1
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCC-------------CHHHHHHHHHHHhcCCCceEEEEee
Q 010722 104 FGKLVCLAHCAGAKVEAFRTNQS-------------TIDDFRKYIIRCSASEDCHVISSYH 151 (503)
Q Consensus 104 L~Ela~LA~c~G~~V~~~ra~~~-------------sldeFR~~v~~~~ss~d~~vIVNy~ 151 (503)
+.++..+++.+|+++..+..... .++.+++.+..+..-.-..|++||.
T Consensus 57 ~~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~r~~~i~~~~~~i~~a~~lG~~~v~~n~~ 117 (367)
T 1tz9_A 57 IQALKQSVEQEGLALLGIESVAIHDAIKAGTDQRDHYIDNYRQTLRNLGKCGISLVCYSFK 117 (367)
T ss_dssp HHHHHHHHHHTTCEEEEECSCCCCHHHHHTCSTHHHHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred HHHHHHHHHHCCCeEEEEecCCCcHHHhcCCcCHHHHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 34666777889999887653221 2455666666554333345666554
No 17
>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}
Probab=24.26 E-value=4.7e+02 Score=24.96 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHh--cCCCceEEEEeecc
Q 010722 106 KLVCLAHCAGAKVEAFRTNQSTIDDFRKYIIRCS--ASEDCHVISSYHRG 153 (503)
Q Consensus 106 Ela~LA~c~G~~V~~~ra~~~sldeFR~~v~~~~--ss~d~~vIVNy~R~ 153 (503)
.++.+++..|..|.....++.+.+.+++.+.... ..+++.+++.|+.-
T Consensus 35 ~~~~~L~~~Gf~v~~l~~~~~t~~~i~~al~~l~~~~~~~D~~~~yfSGH 84 (285)
T 3bij_A 35 DMAAIAAERGFAVTTLMTKAATRAKVIDAIGKAAKALGKGDIFMLSYSGH 84 (285)
T ss_dssp HHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHHHHHHCCTTCEEEEEEESC
T ss_pred HHHHHHHHcCCceEEecCCccCHHHHHHHHHHHHHhCCCCCEEEEEEcCC
Confidence 3455566779887666655678888888776543 24678999999753
No 18
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=21.82 E-value=39 Score=29.79 Aligned_cols=42 Identities=19% Similarity=0.159 Sum_probs=29.9
Q ss_pred CCCCcCCcccccccchhccccchHHHhhcCCCHHHHHHHHHH
Q 010722 72 PGRKWKGPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHC 113 (503)
Q Consensus 72 P~r~wkgpwrwf~e~mLdcc~~le~V~~~GiTL~Ela~LA~c 113 (503)
|...-.+.+|+|+++-+..-.-+...+..|++++++..++..
T Consensus 44 p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~~ 85 (148)
T 3gpv_A 44 FLQRNEKGDRIFNEEALKYLEMILCLKNTGMPIQKIKQFIDW 85 (148)
T ss_dssp TCEECTTCCEEBCHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCcCCCCCCeecCHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 333335679999986665444445568899999999998864
No 19
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=20.80 E-value=39 Score=30.13 Aligned_cols=42 Identities=14% Similarity=0.187 Sum_probs=29.2
Q ss_pred CCCCCcCCcccccccchhccccchHHHhhcCCCHHHHHHHHHH
Q 010722 71 DPGRKWKGPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHC 113 (503)
Q Consensus 71 DP~r~wkgpwrwf~e~mLdcc~~le~V~~~GiTL~Ela~LA~c 113 (503)
.|.+. .+.+|+|+++-+..-.-+...+..|++++++..++..
T Consensus 38 ~p~r~-~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~eI~~~l~~ 79 (154)
T 2zhg_A 38 TSIRN-SGNQRRYKRDVLRYVAIIKIAQRIGIPLATIGEAFGV 79 (154)
T ss_dssp CCEEC-TTSCEEBCTTHHHHHHHHHHHHHHTCCHHHHHHHHCC
T ss_pred CcccC-CCCCEEeCHHHHHHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 35444 4668999886654333344567899999999988864
No 20
>1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10
Probab=20.39 E-value=1.3e+02 Score=28.59 Aligned_cols=83 Identities=10% Similarity=0.045 Sum_probs=53.4
Q ss_pred HHHHHHcCCeE----E-EEeCCCCCHHHHHHHHHHHhcCCCceEEEEeecccccccCCccccccceeecCCCeEEEEecC
Q 010722 108 VCLAHCAGAKV----E-AFRTNQSTIDDFRKYIIRCSASEDCHVISSYHRGAFKQTGTGHFSPIGGYHAGRDMALILDVA 182 (503)
Q Consensus 108 a~LA~c~G~~V----~-~~ra~~~sldeFR~~v~~~~ss~d~~vIVNy~R~~LgQtG~GHFSPIGGYh~~tD~VLILDVA 182 (503)
..+++..|++. + .|+.. .=..|-+.+......++...++++.+. .|++| -||- .+..+.+.++|+
T Consensus 79 ~~~l~~aGL~p~~e~~~~y~s~--~~~a~~~~v~~~i~~~g~~hllsl~f~----~g~aH--aia~-S~~g~~~tlFDP- 148 (188)
T 1ukf_A 79 TAVIEDAGFSLRREPKTVHASG--GSAQLGQTVAHDVAQSGRKHLLSLRFA----NVQGH--AIAC-SCEGSQFKLFDP- 148 (188)
T ss_dssp HHHHHHTTCEECSCCEEEECCS--CHHHHHHHHHHHHCSTTCEEEEEEEET----TTEEE--EEEE-EEETTEEEEEET-
T ss_pred HHHHHHcCCcccccccceeecc--cchhhhHHHHHHHhhCCCceEEEEEec----CCCce--eEEe-ccCCCeEEEeCC-
Confidence 34566667654 2 23322 222577455555556666677666665 27789 7775 478899999999
Q ss_pred CCCCCceeeehHHHHHhccc
Q 010722 183 RFKYPPHWVPLTLLWEAMDR 202 (503)
Q Consensus 183 RfKYPP~WVpl~~L~eAM~t 202 (503)
.|.-|=|+.+.+-+.+..
T Consensus 149 --N~GEF~v~s~~~~dliqs 166 (188)
T 1ukf_A 149 --NLGEFQSSRSAAPQLIKG 166 (188)
T ss_dssp --TTEEEEEETTTHHHHHHH
T ss_pred --CCceeeccHHHHHHHHHH
Confidence 588999987666555544
Done!