BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010723
(502 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo
Complexed With Fad
Length = 407
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 118/244 (48%), Gaps = 13/244 (5%)
Query: 25 ISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 84
+SR LQ+ + G + + V ++ D V+V +G +GDLLI ADG S +
Sbjct: 124 VSRAELQREMLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSAL 183
Query: 85 RKNLFG--PQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYA 142
R + G PQ Y+GY + G+ + A + F+G + V AG+ ++
Sbjct: 184 RPWVLGFTPQRR-YAGYVNWNGLVEIDEALAPGDQWTTFVGEGKQVSLMPVSAGRFYFFF 242
Query: 143 FHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGR 202
PAG + + + L + F GW V LI A D + R +I+D P RGR
Sbjct: 243 DVPLPAGLAEDRDTLRADLSRYFAGWAPPVQKLIAALDPQTTNRIEIHDIEPFSRLVRGR 302
Query: 203 VTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERAR 262
V LLGD+ H+ P++GQGGC A+ED AV L +++ DI +AL+ YE R
Sbjct: 303 VALLGDAGHSTTPDIGQGGCAAMED----AVVLGAVFRQTR------DIAAALREYEAQR 352
Query: 263 RLRV 266
RV
Sbjct: 353 CDRV 356
>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad
pdb|3RP7|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad And Uric Acid
Length = 407
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 116/244 (47%), Gaps = 13/244 (5%)
Query: 25 ISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 84
+SR LQ+ G + + V ++ D V+V +G +GDLLI ADG S +
Sbjct: 124 VSRAELQREXLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSAL 183
Query: 85 RKNLFG--PQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYA 142
R + G PQ Y+GY + G+ + A + F+G + V AG+ ++
Sbjct: 184 RPWVLGFTPQRR-YAGYVNWNGLVEIDEALAPGDQWTTFVGEGKRVSLXPVSAGRFYFFF 242
Query: 143 FHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGR 202
PAG + + + L + F GW V LI A D + R +I+D P RGR
Sbjct: 243 DVPLPAGLAEDRDTLRADLSRYFAGWAPPVQKLIAALDPQTTNRIEIHDIEPFSRLVRGR 302
Query: 203 VTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERAR 262
V LLGD+ H+ P++GQGGC A ED AV L +++ DI +AL+ YE R
Sbjct: 303 VALLGDAGHSTTPDIGQGGCAAXED----AVVLGAVFRQTR------DIAAALREYEAQR 352
Query: 263 RLRV 266
RV
Sbjct: 353 CDRV 356
>pdb|3C96|A Chain A, Crystal Structure Of The Flavin-Containing Monooxygenase
Phzs From Pseudomonas Aeruginosa. Northeast Structural
Genomics Consortium Target Par240
Length = 410
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 115/272 (42%), Gaps = 53/272 (19%)
Query: 25 ISRMTLQQILAKAV----GDEIILNESNVIDFKDHGDKVSVVLENG----QCYAGDLLIG 76
I R LQ IL AV G + + V ++ +V + +G Q D+L+G
Sbjct: 104 IHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVG 163
Query: 77 ADGIWSKVRKNLFGPQEAI-YSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDV-- 133
ADGI S VR +L Q + + G T + G+ +F FL K V++D
Sbjct: 164 ADGIHSAVRAHLHPDQRPLSHGGITMWRGVTEF----------DRFLDGKTMIVANDEHW 213
Query: 134 ---------------GAGKMQWYAFHKEPA-GGVDGP-----EGKKERLLKIFEGWCDNV 172
G + W A G +D +G+ E +L F W
Sbjct: 214 SRLVAYPISARHAAEGKSLVNWVCMVPSAAVGQLDNEADWNRDGRLEDVLPFFADWDLGW 273
Query: 173 VDLI-LATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQL 231
D+ L T + IL+ + DR P+ WGRGR+TLLGD+ H M P G AI DG +L
Sbjct: 274 FDIRDLLTRNQLILQYPMVDRDPLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIEL 333
Query: 232 AVELEKACKKSNESKTPIDIVSALKSYERARR 263
A L + D+ +AL+ YE ARR
Sbjct: 334 AAALARNA----------DVAAALREYEEARR 355
>pdb|2RGJ|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase Phzs
Length = 402
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 113/272 (41%), Gaps = 53/272 (19%)
Query: 25 ISRMTLQQILAKAV----GDEIILNESNVIDFKDHGDKVSVVLENG----QCYAGDLLIG 76
I R LQ IL AV G + + V ++ +V + +G Q D+L+G
Sbjct: 104 IHRGELQXILLAAVRERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVG 163
Query: 77 ADGIWSKVRKNLFGPQEAI-YSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGA 135
ADGI S VR +L Q + + G T + G+ +F FL K V++D
Sbjct: 164 ADGIHSAVRAHLHPDQRPLSHGGITXWRGVTEF----------DRFLDGKTXIVANDEHW 213
Query: 136 GKMQWYAFHKEPA------------------GGVDGP-----EGKKERLLKIFEGWCDNV 172
++ Y A G +D +G+ E +L F W
Sbjct: 214 SRLVAYPISARHAAEGKSLVNWVCXVPSAAVGQLDNEADWNRDGRLEDVLPFFADWDLGW 273
Query: 173 VDLI-LATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQL 231
D+ L T + IL+ DR P+ WGRGR+TLLGD+ H P G AI DG +L
Sbjct: 274 FDIRDLLTRNQLILQYPXVDRDPLPHWGRGRITLLGDAAHLXYPXGANGASQAILDGIEL 333
Query: 232 AVELEKACKKSNESKTPIDIVSALKSYERARR 263
A L + D+ +AL+ YE ARR
Sbjct: 334 AAALARNA----------DVAAALREYEEARR 355
>pdb|3ALH|A Chain A, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALH|B Chain B, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALI|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALI|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALJ|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Reduced Form
Length = 379
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 110/250 (44%), Gaps = 31/250 (12%)
Query: 1 MFTRYIKFDTFTPAAEKGLPVTRVISRMTLQQIL---AKAVGDEIILNESNVIDFKDHGD 57
M + + +TF GLP R+++R L L A+A+G +I +N V D
Sbjct: 86 MHNKSVSKETFN-----GLP-WRIMTRSHLHDALVNRARALGVDISVNSEAVA-----AD 134
Query: 58 KVS-VVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADI--- 113
V + L+ G+ DL++GADG+ SKVR ++ Q+ S I + ++
Sbjct: 135 PVGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHG 194
Query: 114 ---ESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCD 170
++ F Q + S ++ Y PA P G + E W +
Sbjct: 195 EWDNTIDMWNFWPRVQRILYSPCNENEL--YLGLMAPAAD---PRGSSVPI--DLEVWVE 247
Query: 171 NVVDLILATDEEAIL---RRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIED 227
L E A L R D Y+ T + +W RG+V L+GD+ HAM P L QG A+ +
Sbjct: 248 MFPFLEPCLIEAAKLKTARYDKYETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVN 307
Query: 228 GYQLAVELEK 237
+ L+ +LE+
Sbjct: 308 AFSLSQDLEE 317
>pdb|3GMC|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
pdb|3GMC|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
Length = 415
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 113/259 (43%), Gaps = 49/259 (18%)
Query: 1 MFTRYIKFDTFTPAAEKGLPVTRVISRMTLQQIL---AKAVGDEIILNESNVIDFKDHGD 57
M + + +TF GLP R+++R L L A+A+G +I +N V D
Sbjct: 122 MHNKSVSKETFN-----GLP-WRIMTRSHLHDALVNRARALGVDISVNSEAVA-----AD 170
Query: 58 KVS-VVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESV 116
V + L+ G+ DL++GADG+ SKVR ++ Q+ + G+ + ++
Sbjct: 171 PVGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDR----WVSKDGLIRLIVPRMKKE 226
Query: 117 GYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKI------------ 164
LGH ++ + D+ + F + P + E L +
Sbjct: 227 -----LGHGEWDNTIDM-------WNFWPRVQRILYSPCNENELYLGLMAPAADPRGSSV 274
Query: 165 ---FEGWCDNVVDLILATDEEAIL---RRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLG 218
E W + L E A L R D Y+ T + +W RG+V L+GD+ HAM P L
Sbjct: 275 PIDLEVWVEMFPFLEPCLIEAAKLKTARYDKYETTKLDSWTRGKVALVGDAAHAMCPALA 334
Query: 219 QGGCMAIEDGYQLAVELEK 237
QG A+ + + L+ +LE+
Sbjct: 335 QGAGCAMVNAFSLSQDLEE 353
>pdb|3ALL|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
pdb|3ALL|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
Length = 379
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 110/250 (44%), Gaps = 31/250 (12%)
Query: 1 MFTRYIKFDTFTPAAEKGLPVTRVISRMTLQQIL---AKAVGDEIILNESNVIDFKDHGD 57
M + + +TF GLP R+++R L L A+A+G +I +N V D
Sbjct: 86 MHNKSVSKETFN-----GLP-WRIMTRSHLHDALVNRARALGVDISVNSEAVA-----AD 134
Query: 58 KVS-VVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADI--- 113
V + L+ G+ DL++GADG+ SKVR ++ Q+ S I + ++
Sbjct: 135 PVGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHG 194
Query: 114 ---ESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCD 170
++ F Q + S ++ Y PA P G + E W +
Sbjct: 195 EWDNTIDMWNFWPRVQRILYSPCNENEL--YLGLMAPAAD---PRGSSVPI--DLEVWVE 247
Query: 171 NVVDLILATDEEAILRRDIYDR---TPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIED 227
L E A L+ YD+ T + +W RG+V L+GD+ HAM P L QG A+ +
Sbjct: 248 MFPFLEPCLIEAAKLKTARYDKAETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVN 307
Query: 228 GYQLAVELEK 237
+ L+ +LE+
Sbjct: 308 AFSLSQDLEE 317
>pdb|3ALK|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270f
Length = 379
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 110/250 (44%), Gaps = 31/250 (12%)
Query: 1 MFTRYIKFDTFTPAAEKGLPVTRVISRMTLQQIL---AKAVGDEIILNESNVIDFKDHGD 57
M + + +TF GLP R+++R L L A+A+G +I +N V D
Sbjct: 86 MHNKSVSKETFN-----GLP-WRIMTRSHLHDALVNRARALGVDISVNSEAVA-----AD 134
Query: 58 KVS-VVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADI--- 113
V + L+ G+ DL++GADG+ SKVR ++ Q+ S I + ++
Sbjct: 135 PVGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHG 194
Query: 114 ---ESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCD 170
++ F Q + S ++ Y PA P G + E W +
Sbjct: 195 EWDNTIDMWNFWPRVQRILYSPCNENEL--YLGLMAPAAD---PRGSSVPI--DLEVWVE 247
Query: 171 NVVDLILATDEEAILRRDIYDR---TPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIED 227
L E A L+ YD+ T + +W RG+V L+GD+ HAM P L QG A+ +
Sbjct: 248 MFPFLEPCLIEAAKLKTARYDKFETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVN 307
Query: 228 GYQLAVELEK 237
+ L+ +LE+
Sbjct: 308 AFSLSQDLEE 317
>pdb|3GMB|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
pdb|3GMB|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
Length = 415
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 102/237 (43%), Gaps = 32/237 (13%)
Query: 17 KGLPVTRVISRMTLQQIL---AKAVGDEIILNESNVIDFKDHGDKVS-VVLENGQCYAGD 72
GLP R+ +R L L A+A+G +I +N V D V + L+ G+ D
Sbjct: 133 NGLP-WRIXTRSHLHDALVNRARALGVDISVNSEAVA-----ADPVGRLTLQTGEVLEAD 186
Query: 73 LLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGY---------RVFLG 123
L++GADG+ SKVR ++ Q+ S I VP + +G+ F
Sbjct: 187 LIVGADGVGSKVRDSIGFKQDRWVSKDGL---IRLIVPRXKKELGHGEWDNTIDXWNFWP 243
Query: 124 HKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEA 183
Q + S ++ Y PA P G + E W + L E A
Sbjct: 244 RVQRILYSPCNENEL--YLGLXAPAAD---PRGSSVPI--DLEVWVEXFPFLEPCLIEAA 296
Query: 184 IL---RRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEK 237
L R D Y+ T + +W RG+V L+GD+ HA P L QG A + + L+ +LE+
Sbjct: 297 KLKTARYDKYETTKLDSWTRGKVALVGDAAHAXCPALAQGAGCAXVNAFSLSQDLEE 353
>pdb|4HB9|A Chain A, Crystal Structure Of A Putative Fad Containing
Monooxygenase From Photorhabdus Luminescens Subsp.
Laumondii Tto1 (Target Psi-012791)
Length = 412
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 117/311 (37%), Gaps = 38/311 (12%)
Query: 11 FTPAAEKGLPVTRV-ISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCY 69
+P A K + R+ ISR L++IL K + + I N++ V + + +G
Sbjct: 94 ISPXAGKIISEQRLSISRTELKEILNKGLANTIQWNKTFVRYEHIENGGIKIFFADGSHE 153
Query: 70 AGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPA--DIESVGYR-------- 119
D+L+GADG SKVRK E G + G A PA + +R
Sbjct: 154 NVDVLVGADGSNSKVRKQYLPFIERFDVGVSXIIGRARLTPALTALLPQNFRDGTPNSIV 213
Query: 120 ------VFLGHKQYFVSSDVGAGKMQ------WYAFHKEPAGGVDGPEGKKERLLKIFEG 167
+F+ + V+ V A + W + + + E L + +
Sbjct: 214 PKSPDWLFISXWRAPVNIHVEASLAEIDNFIVWVYVAATDSLPDNITDFSAEALCDLVQS 273
Query: 168 ----WCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCM 223
W ++ L+ +D E I + + W VTLLGD++H P G G
Sbjct: 274 RXISWDPSLHTLVQQSDXENISPLHLRSXPHLLPWKSSTVTLLGDAIHNXTPXTGSGANT 333
Query: 224 AIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTY 283
A+ D L +L E +V A+ YE+ R I G++ + S
Sbjct: 334 ALRDALLLTQKLASVASGHEE------LVKAISDYEQQXRAYANEIVGIS-----LRSAQ 382
Query: 284 KAYLGVGLGPL 294
A + + PL
Sbjct: 383 NAVIHFSIPPL 393
>pdb|3ALM|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant C294a
pdb|3ALM|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant C294a
Length = 379
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 113/259 (43%), Gaps = 49/259 (18%)
Query: 1 MFTRYIKFDTFTPAAEKGLPVTRVISRMTLQQIL---AKAVGDEIILNESNVIDFKDHGD 57
M + + +TF GLP R+++R L L A+A+G +I +N V D
Sbjct: 86 MHNKSVSKETFN-----GLP-WRIMTRSHLHDALVNRARALGVDISVNSEAVA-----AD 134
Query: 58 KVS-VVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESV 116
V + L+ G+ DL++GADG+ SKVR ++ Q+ + G+ + ++
Sbjct: 135 PVGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDR----WVSKDGLIRLIVPRMKKE 190
Query: 117 GYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKI------------ 164
LGH ++ + D+ + F + P + E L +
Sbjct: 191 -----LGHGEWDNTIDM-------WNFWPRVQRILYSPCNENELYLGLMAPAADPRGSSV 238
Query: 165 ---FEGWCDNVVDLILATDEEAIL---RRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLG 218
E W + L E A L R D Y+ T + +W RG+V L+GD+ HAM P L
Sbjct: 239 PIDLEVWVEMFPFLEPCLIEAAKLKTARYDKYETTKLDSWTRGKVALVGDAAHAMAPALA 298
Query: 219 QGGCMAIEDGYQLAVELEK 237
QG A+ + + L+ +LE+
Sbjct: 299 QGAGCAMVNAFSLSQDLEE 317
>pdb|3V3N|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3O|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
Length = 378
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 101/254 (39%), Gaps = 31/254 (12%)
Query: 25 ISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 84
I+R L+ IL ++ ++ ++ + ++ + K ++ EN DL+I A+G SKV
Sbjct: 105 INRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSKV 164
Query: 85 RKNLFGPQEAIYSGYTCYTGIADFVPADIESVGY-------RVFLGHK-QYFVSSDVGAG 136
RK E +G + AD +I G+ R+ H+ ++ G
Sbjct: 165 RK-FVTDTEVEETG--TFNIQADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNNNG 221
Query: 137 KMQWYAFHKEP-----AGGVDGPEGKK--ERLLKIFEGWCDNVVDLILATDEEAILRRDI 189
+ + K P VD + LLK F W + +LI AT L I
Sbjct: 222 ALHFGISFKTPDEWKNQTQVDFQNRNSVVDFLLKKFSDWDERYKELIHATLSFVGLATRI 281
Query: 190 YDRTPIFTWGRGR---VTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESK 246
+ W R +T++GD+ H M P GQG + D L+ L S
Sbjct: 282 FPLEK--PWKSKRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNS---- 335
Query: 247 TPIDIVSALKSYER 260
I A+K+YE+
Sbjct: 336 ----IEEAVKNYEQ 345
>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2Y6Q|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|4A6N|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A99|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
Length = 398
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 100/254 (39%), Gaps = 31/254 (12%)
Query: 25 ISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 84
I+R L+ IL ++ ++ ++ + ++ + K ++ EN DL+I A+G SKV
Sbjct: 125 INRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSKV 184
Query: 85 RKNLFGPQEAIYSGYTCYTGIADFVPADIESVGY-------RVFLGHK-QYFVSSDVGAG 136
RK E +G + AD +I G+ R+ H+ ++ G
Sbjct: 185 RK-FVTDTEVEETG--TFNIQADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNNNG 241
Query: 137 KMQWYAFHKEP-----AGGVDGPEGKK--ERLLKIFEGWCDNVVDLILATDEEAILRRDI 189
+ + K P VD + LLK F W + +LI T L I
Sbjct: 242 ALHFGISFKTPDEWKNQTQVDFQNRNSVVDFLLKEFSDWDERYKELIHTTLSFVGLATRI 301
Query: 190 YDRTPIFTWGRGR---VTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESK 246
+ W R +T++GD+ H M P GQG + D L+ L S
Sbjct: 302 FPLEK--PWKSKRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNS---- 355
Query: 247 TPIDIVSALKSYER 260
I A+K+YE+
Sbjct: 356 ----IEEAVKNYEQ 365
>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
Length = 398
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 100/254 (39%), Gaps = 31/254 (12%)
Query: 25 ISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 84
I+R L+ IL ++ ++ ++ + ++ + K ++ EN DL+I A+G SKV
Sbjct: 125 INRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSKV 184
Query: 85 RKNLFGPQEAIYSGYTCYTGIADFVPADIESVGY-------RVFLGHK-QYFVSSDVGAG 136
RK E +G + AD +I G+ R+ H+ ++ G
Sbjct: 185 RK-FVTDTEVEETG--TFNIQADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNNNG 241
Query: 137 KMQWYAFHKEP-----AGGVDGPEGKK--ERLLKIFEGWCDNVVDLILATDEEAILRRDI 189
+ + K P VD + LLK F W + +LI T L I
Sbjct: 242 ALHFGISFKTPDEWKNQTQVDFQNRNSVVDFLLKEFSDWDERYKELIHTTLSFVGLATRI 301
Query: 190 YDRTPIFTWGRGR---VTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESK 246
+ W R +T++GD+ H M P GQG + D L+ L S
Sbjct: 302 FPLEK--PWKSKRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNS---- 355
Query: 247 TPIDIVSALKSYER 260
I A+K+YE+
Sbjct: 356 ----IEEAVKNYEQ 365
>pdb|4A6N|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
Length = 398
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 99/254 (38%), Gaps = 31/254 (12%)
Query: 25 ISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 84
I+R L+ IL ++ ++ ++ + ++ + K ++ EN DL+I A+G SKV
Sbjct: 125 INRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSKV 184
Query: 85 RKNLFGPQEAIYSGYTCYTGIADFVPADIESVGY-------RVFLGHK-QYFVSSDVGAG 136
RK E +G + AD +I G+ R+ H+ ++ G
Sbjct: 185 RK-FVTDTEVEETG--TFNIQADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNNNG 241
Query: 137 KMQWYAFHKEP-----AGGVDGPEGKK--ERLLKIFEGWCDNVVDLILATDEEAILRRDI 189
+ + K P VD + LLK F W +LI T L I
Sbjct: 242 ALHFGISFKTPDEWKNQTQVDFQNRNSVVDFLLKEFSDWDKRYKELIHTTLSFVGLATRI 301
Query: 190 YDRTPIFTWGRGR---VTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESK 246
+ W R +T++GD+ H M P GQG + D L+ L S
Sbjct: 302 FPLEK--PWKSKRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNS---- 355
Query: 247 TPIDIVSALKSYER 260
I A+K+YE+
Sbjct: 356 ----IEEAVKNYEQ 365
>pdb|2XYO|A Chain A, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|B Chain B, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|C Chain C, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|D Chain D, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
Length = 399
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 100/255 (39%), Gaps = 33/255 (12%)
Query: 25 ISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 84
I+R L+ IL ++ ++ ++ + ++ + K ++ EN DL+I A+G SKV
Sbjct: 126 INRNDLRAILLNSLENDTVIWDRKLVXLEPGKKKWTLTFENKPSETADLVILANGGXSKV 185
Query: 85 RKNLFGPQEAIYSGYTCYTGIADFVPADIESVGY-------RVFLGHK-QYFVSSDVGAG 136
RK E +G + AD +I G+ R+ H+ ++ G
Sbjct: 186 RK-FVTDTEVEETG--TFNIQADIHQPEINCPGFFQLCNGNRLXASHQGNLLFANPNNNG 242
Query: 137 KMQWYAFHKEP-----AGGVDGPEGKK--ERLLKIFEGWCDNVVDLILATDEEAILRRDI 189
+ + K P VD + LLK F W + +LI T L I
Sbjct: 243 ALHFGISFKTPDEWKNQTQVDFQNRNSVVDFLLKEFSDWDERYKELIHTTLSFVGLATRI 302
Query: 190 YDRTPIFT-WGRGR---VTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNES 245
+ P+ W R +T +GD+ H P GQG + D L+ L S
Sbjct: 303 F---PLEKPWKSKRPLPITXIGDAAHLXPPFAGQGVNSGLVDALILSDNLADGKFNS--- 356
Query: 246 KTPIDIVSALKSYER 260
I A+K+YE+
Sbjct: 357 -----IEEAVKNYEQ 366
>pdb|3P9U|A Chain A, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|B Chain B, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|C Chain C, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|D Chain D, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
Length = 378
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 100/255 (39%), Gaps = 33/255 (12%)
Query: 25 ISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 84
I+R L+ IL ++ ++ ++ + ++ + K ++ EN DL+I A+G SKV
Sbjct: 105 INRNDLRAILLNSLENDTVIWDRKLVXLEPGKKKWTLTFENKPSETADLVILANGGXSKV 164
Query: 85 RKNLFGPQEAIYSGYTCYTGIADFVPADIESVGY-------RVFLGHK-QYFVSSDVGAG 136
RK E +G + AD +I G+ R+ H+ ++ G
Sbjct: 165 RK-FVTDTEVEETG--TFNIQADIHQPEINCPGFFQLCNGNRLXASHQGNLLFANPNNNG 221
Query: 137 KMQWYAFHKEP-----AGGVDGPEGKK--ERLLKIFEGWCDNVVDLILATDEEAILRRDI 189
+ + K P VD + LLK F W + +LI T L I
Sbjct: 222 ALHFGISFKTPDEWKNQTQVDFQNRNSVVDFLLKKFSDWDERYKELIHTTLSFVGLATRI 281
Query: 190 YDRTPIFT-WGRGR---VTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNES 245
+ P+ W R +T +GD+ H P GQG + D L+ L S
Sbjct: 282 F---PLEKPWKSKRPLPITXIGDAAHLXPPFAGQGVNSGLVDALILSDNLADGKFNS--- 335
Query: 246 KTPIDIVSALKSYER 260
I A+K+YE+
Sbjct: 336 -----IEEAVKNYEQ 345
>pdb|3IHG|A Chain A, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|B Chain B, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|C Chain C, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
Length = 535
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 198 WGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKS 257
W GRV L GD+ P G G A+ DG+ LA +L + + L +
Sbjct: 298 WREGRVFLAGDAAKVTPPTGGMSGNAAVADGFDLAWKLAAVLQGQAGA-------GLLDT 350
Query: 258 YERARRLRVAVIHGLARSAAVMASTYKAYL 287
YE R++ ++ +A + A+ A ++
Sbjct: 351 YEDERKVAAELV--VAEALAIYAQRMAPHM 378
>pdb|2QA1|A Chain A, Crystal Structure Of Pgae, An Aromatic Hydroxylase
Involved In Angucycline Biosynthesis
Length = 500
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 200 RGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVEL 235
RGRV L GDS H P GQG +I+D L +L
Sbjct: 276 RGRVILAGDSAHIHLPAGGQGMNTSIQDAVNLGWKL 311
>pdb|2VOU|A Chain A, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|B Chain B, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|C Chain C, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
Length = 397
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 34 LAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQE 93
L + G E ++ + V + +G + +IGADG S VRK L G E
Sbjct: 105 LYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASVVRKRLLG-IE 163
Query: 94 AIYSGYTCYTGI 105
Y+GY + G+
Sbjct: 164 PTYAGYVTWRGV 175
>pdb|2DKH|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, In Complex With The Substrate
pdb|2DKI|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, Under Pressure Of Xenon Gas (12
Atm)
Length = 639
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 202 RVTLLGDSVHAMQPNLGQGGCMAIED----GYQLAVELEKAC 239
RV + GD+ H P GQG +++D G++LA L K C
Sbjct: 343 RVFIAGDACHTHSPKAGQGMNFSMQDSFNLGWKLAAVLRKQC 384
>pdb|2QA2|A Chain A, Crystal Structure Of Cabe, An Aromatic Hydroxylase From
Angucycline Biosynthesis, Determined To 2.7 A Resolution
Length = 499
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 195 IFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVEL 235
+ + RGRV L GDS H P GQG ++++D L +L
Sbjct: 272 VSAYRRGRVLLAGDSAHVHLPAGGQGMNVSVQDSVNLGWKL 312
>pdb|2JPE|A Chain A, Fha Domain Of Nipp1
Length = 140
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 409 IVIPSAQVSKMHARISYKDGA--FYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDT 466
I S++HA + Y +LIDL S HGT++ R+ + P + T
Sbjct: 68 FTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLG-----HIRLEPHKPQQIPIDST 122
Query: 467 IEFGSDKKA 475
+ FG+ +A
Sbjct: 123 VSFGASTRA 131
>pdb|2XT9|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Alpha-
Ketoglutarate Decarboxylase In Complex With Gara
Length = 115
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 407 TSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVT 444
+ I + VS+ HA + G F ++D+ S +GTYV
Sbjct: 41 SDIFLDDVTVSRRHAEFRLEGGEFQVVDVGSLNGTYVN 78
>pdb|2X3N|A Chain A, Crystal Structure Of Pqsl, A Probable Fad-Dependent
Monooxygenase From Pseudomonas Aeruginosa
Length = 399
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 203 VTLLGDSVHAMQPNLGQGGCMAIE 226
V +LGD++H + P GQG +AIE
Sbjct: 288 VAMLGDAIHNVHPITGQGMNLAIE 311
>pdb|2KB4|A Chain A, Nmr Structure Of The Unphosphorylated Form Of Odhi, Odhi
Length = 143
Score = 29.6 bits (65), Expect = 3.8, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 407 TSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDT 466
+ I + VS+ HA +G F ++D+ S +GTYV + E R +V + D
Sbjct: 76 SDIFLDDVTVSRRHAEFRINEGEFEVVDVGSLNGTYV-NREPRNAQV-------MQTGDE 127
Query: 467 IEFGSDKKAIFRVKVIGTP 485
I+ G FR+ + P
Sbjct: 128 IQIGK-----FRLVFLAGP 141
>pdb|2KB3|A Chain A, Nmr Structure Of The Phosphorylated Form Of Odhi, Podhi
Length = 143
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 407 TSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDT 466
+ I + VS+ HA +G F ++D+ S +GTYV + E R +V + D
Sbjct: 76 SDIFLDDVTVSRRHAEFRINEGEFEVVDVGSLNGTYV-NREPRNAQV-------MQTGDE 127
Query: 467 IEFGSDKKAIFRVKVIGTP 485
I+ G FR+ + P
Sbjct: 128 IQIGK-----FRLVFLAGP 141
>pdb|3OBR|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype D
Binding Domain
pdb|3OBT|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype D
Ligand Binding Domain In Complex With
N-Acetylneuraminic Acid
Length = 434
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 38 VGDEIILNESNVIDFK--DHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL 88
VGD + LN DFK GDK+ V L N Y+ + W K+ K+L
Sbjct: 36 VGDNVQLNTIYTNDFKLSSSGDKIIVNLNNNILYSAIYENSSVSFWIKISKDL 88
>pdb|3OGG|A Chain A, Crystal Structure Of The Receptor Binding Domain Of
Botulinum Neurotoxin D
Length = 414
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 38 VGDEIILNESNVIDFK--DHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL 88
VGD + LN DFK GDK+ V L N Y+ + W K+ K+L
Sbjct: 29 VGDNVQLNTIYTNDFKLSSSGDKIIVNLNNNILYSAIYENSSVSFWIKISKDL 81
>pdb|3RMY|A Chain A, Crystal Structure Of HcrD W1238A MUTANT
pdb|3RMY|B Chain B, Crystal Structure Of HcrD W1238A MUTANT
pdb|3RMY|C Chain C, Crystal Structure Of HcrD W1238A MUTANT
pdb|3RMY|D Chain D, Crystal Structure Of HcrD W1238A MUTANT
Length = 415
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 38 VGDEIILNESNVIDFK--DHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL 88
VGD + LN DFK GDK+ V L N Y+ + W K+ K+L
Sbjct: 30 VGDNVQLNTIYTNDFKLSSSGDKIIVNLNNNILYSAIYENSSVSFWIKISKDL 82
>pdb|3N7J|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype D
Binding Domain
Length = 415
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 38 VGDEIILNESNVIDFK--DHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL 88
VGD + LN DFK GDK+ V L N Y+ + W K+ K+L
Sbjct: 30 VGDNVQLNTIYTNDFKLSSSGDKIIVNLNNNILYSAIYENSSVSFWIKISKDL 82
>pdb|3RMX|A Chain A, Crystal Structure Of HcrD F1240A MUTANT
pdb|3RMX|B Chain B, Crystal Structure Of HcrD F1240A MUTANT
pdb|3RMX|C Chain C, Crystal Structure Of HcrD F1240A MUTANT
pdb|3RMX|D Chain D, Crystal Structure Of HcrD F1240A MUTANT
Length = 415
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 38 VGDEIILNESNVIDFK--DHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL 88
VGD + LN DFK GDK+ V L N Y+ + W K+ K+L
Sbjct: 30 VGDNVQLNTIYTNDFKLSSSGDKIIVNLNNNILYSAIYENSSVSFWIKISKDL 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,585,843
Number of Sequences: 62578
Number of extensions: 687075
Number of successful extensions: 1461
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1412
Number of HSP's gapped (non-prelim): 51
length of query: 502
length of database: 14,973,337
effective HSP length: 103
effective length of query: 399
effective length of database: 8,527,803
effective search space: 3402593397
effective search space used: 3402593397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)