Query 010723
Match_columns 502
No_of_seqs 498 out of 3417
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 03:50:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010723.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010723hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02927 antheraxanthin epoxid 100.0 3.2E-76 6.9E-81 617.6 54.5 497 4-502 170-668 (668)
2 PRK06753 hypothetical protein; 100.0 1.9E-33 4.2E-38 285.2 28.1 267 20-305 90-356 (373)
3 PRK06617 2-octaprenyl-6-methox 100.0 1.7E-34 3.6E-39 292.5 17.5 271 19-320 95-373 (374)
4 PRK08013 oxidoreductase; Provi 100.0 3.1E-33 6.8E-38 285.8 19.2 281 21-320 104-392 (400)
5 PRK07588 hypothetical protein; 100.0 2.9E-32 6.3E-37 278.2 25.2 268 22-306 97-368 (391)
6 PRK06475 salicylate hydroxylas 100.0 9.2E-32 2E-36 275.1 27.8 261 23-305 102-377 (400)
7 TIGR03219 salicylate_mono sali 100.0 1E-31 2.2E-36 276.2 27.3 249 23-279 100-372 (414)
8 TIGR01989 COQ6 Ubiquinone bios 100.0 7.7E-32 1.7E-36 278.3 23.5 278 19-310 108-431 (437)
9 COG0654 UbiH 2-polyprenyl-6-me 100.0 7.3E-32 1.6E-36 274.2 22.6 268 19-309 95-372 (387)
10 PRK05714 2-octaprenyl-3-methyl 100.0 2.1E-32 4.5E-37 280.6 17.9 279 21-320 105-395 (405)
11 PRK08849 2-octaprenyl-3-methyl 100.0 3.3E-32 7.1E-37 276.8 18.6 272 21-319 103-383 (384)
12 PRK08850 2-octaprenyl-6-methox 100.0 4.9E-32 1.1E-36 277.6 18.9 279 20-319 103-391 (405)
13 PRK07236 hypothetical protein; 100.0 2.1E-30 4.5E-35 263.9 28.2 244 24-279 96-374 (386)
14 PRK06183 mhpA 3-(3-hydroxyphen 100.0 1.2E-30 2.7E-35 276.2 26.9 277 17-317 102-390 (538)
15 PRK07538 hypothetical protein; 100.0 3.3E-30 7.1E-35 264.7 28.7 243 22-277 96-363 (413)
16 PRK05868 hypothetical protein; 100.0 2.2E-30 4.7E-35 261.7 26.4 240 22-274 99-346 (372)
17 PRK08020 ubiF 2-octaprenyl-3-m 100.0 1.8E-31 3.8E-36 272.5 18.0 280 20-319 104-390 (391)
18 PRK08773 2-octaprenyl-3-methyl 100.0 2.2E-31 4.8E-36 271.8 16.9 279 20-319 105-391 (392)
19 PRK06996 hypothetical protein; 100.0 2.4E-31 5.2E-36 271.7 17.1 271 21-318 108-393 (398)
20 PRK06185 hypothetical protein; 100.0 4.2E-30 9.2E-35 263.8 24.9 281 18-317 98-391 (407)
21 PRK07045 putative monooxygenas 100.0 8.9E-30 1.9E-34 259.6 27.1 265 22-302 100-373 (388)
22 PRK07494 2-octaprenyl-6-methox 100.0 3.5E-31 7.5E-36 270.1 16.2 279 19-319 102-386 (388)
23 PRK08163 salicylate hydroxylas 100.0 3.9E-29 8.3E-34 255.8 29.1 246 22-279 103-355 (396)
24 PRK06834 hypothetical protein; 100.0 1.5E-29 3.3E-34 263.3 25.9 279 18-324 90-374 (488)
25 PRK07333 2-octaprenyl-6-methox 100.0 2.5E-30 5.4E-35 265.2 18.1 282 17-319 100-389 (403)
26 PRK06847 hypothetical protein; 100.0 6E-29 1.3E-33 252.5 26.3 247 20-279 99-350 (375)
27 PRK07364 2-octaprenyl-6-methox 100.0 6.3E-30 1.4E-34 263.2 18.5 280 20-320 113-404 (415)
28 PRK09126 hypothetical protein; 100.0 3E-29 6.5E-34 256.2 18.4 277 20-317 102-387 (392)
29 PRK08244 hypothetical protein; 100.0 4.4E-29 9.5E-34 262.0 19.9 245 18-276 90-340 (493)
30 TIGR01984 UbiH 2-polyprenyl-6- 100.0 4.3E-29 9.3E-34 254.2 17.3 268 20-309 97-370 (382)
31 PRK08294 phenol 2-monooxygenas 100.0 1.1E-27 2.3E-32 256.1 26.1 243 23-279 136-411 (634)
32 PRK06184 hypothetical protein; 100.0 1.4E-27 3.1E-32 251.0 25.6 241 18-277 99-349 (502)
33 PRK08243 4-hydroxybenzoate 3-m 100.0 8.1E-28 1.8E-32 245.3 22.5 272 20-309 95-375 (392)
34 TIGR01988 Ubi-OHases Ubiquinon 100.0 4.4E-28 9.6E-33 247.0 19.9 269 20-309 98-373 (385)
35 PRK07608 ubiquinone biosynthes 100.0 3.7E-28 8E-33 247.9 18.2 278 21-318 104-387 (388)
36 PRK08132 FAD-dependent oxidore 100.0 2.3E-27 4.9E-32 251.9 23.6 265 19-308 116-392 (547)
37 PF01494 FAD_binding_3: FAD bi 100.0 7.3E-28 1.6E-32 242.2 18.5 245 17-272 100-355 (356)
38 KOG2614 Kynurenine 3-monooxyge 100.0 1.2E-27 2.5E-32 230.6 18.9 241 22-265 97-360 (420)
39 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 4.7E-27 1E-31 239.1 24.2 242 24-280 99-350 (390)
40 PRK05732 2-octaprenyl-6-methox 100.0 1.1E-27 2.4E-32 245.0 17.8 277 21-318 105-390 (395)
41 PRK07190 hypothetical protein; 100.0 9.1E-27 2E-31 242.2 24.9 238 19-277 100-344 (487)
42 PRK06126 hypothetical protein; 99.9 2.4E-26 5.1E-31 244.3 23.7 238 22-277 120-372 (545)
43 PLN02985 squalene monooxygenas 99.9 8.2E-26 1.8E-30 235.9 25.6 245 20-277 139-398 (514)
44 PTZ00367 squalene epoxidase; P 99.9 2.4E-25 5.1E-30 233.4 27.6 251 21-277 124-418 (567)
45 PRK08255 salicylyl-CoA 5-hydro 99.9 3.9E-22 8.3E-27 218.3 14.7 229 23-278 92-337 (765)
46 KOG3855 Monooxygenase involved 99.9 5.2E-22 1.1E-26 190.1 11.0 286 18-317 140-477 (481)
47 TIGR02032 GG-red-SF geranylger 99.9 5.3E-20 1.2E-24 180.3 22.1 206 20-235 83-295 (295)
48 TIGR02023 BchP-ChlP geranylger 99.8 3.6E-19 7.8E-24 181.3 25.0 226 22-272 86-327 (388)
49 PLN00093 geranylgeranyl diphos 99.8 2.6E-19 5.6E-24 184.3 23.5 234 20-273 124-377 (450)
50 TIGR02028 ChlP geranylgeranyl 99.8 4.5E-18 9.7E-23 173.4 26.4 230 21-270 86-335 (398)
51 PRK11445 putative oxidoreducta 99.8 2.2E-18 4.8E-23 173.0 21.1 215 22-266 93-317 (351)
52 PF08491 SE: Squalene epoxidas 99.8 1.5E-17 3.3E-22 155.2 19.3 218 71-304 2-222 (276)
53 COG0644 FixC Dehydrogenases (f 99.7 3.9E-16 8.5E-21 159.2 25.7 232 20-268 87-327 (396)
54 PF00498 FHA: FHA domain; Int 99.7 1.8E-17 3.9E-22 124.5 8.6 67 394-470 1-68 (68)
55 TIGR01790 carotene-cycl lycope 99.7 1.2E-15 2.6E-20 155.6 23.2 227 23-268 80-321 (388)
56 PRK10015 oxidoreductase; Provi 99.7 9.5E-16 2.1E-20 157.6 20.2 234 21-265 101-355 (429)
57 PRK10157 putative oxidoreducta 99.7 1.6E-15 3.4E-20 156.2 21.4 235 20-266 100-356 (428)
58 TIGR01789 lycopene_cycl lycope 99.6 3.1E-14 6.8E-19 143.4 20.9 224 18-270 80-311 (370)
59 PLN02697 lycopene epsilon cycl 99.5 1.7E-12 3.7E-17 135.3 24.5 232 24-268 188-442 (529)
60 KOG1298 Squalene monooxygenase 99.5 6.8E-13 1.5E-17 126.7 17.6 246 20-274 139-395 (509)
61 cd00060 FHA Forkhead associate 99.5 7.1E-13 1.5E-17 108.0 12.0 97 368-479 2-100 (102)
62 PF04820 Trp_halogenase: Trypt 99.4 6.1E-12 1.3E-16 130.0 19.7 229 17-274 143-379 (454)
63 TIGR03354 VI_FHA type VI secre 99.4 7.3E-13 1.6E-17 132.8 11.5 85 380-482 16-104 (396)
64 PLN02463 lycopene beta cyclase 99.4 2.2E-11 4.8E-16 125.1 21.5 209 18-242 105-335 (447)
65 COG1716 FOG: FHA domain [Signa 99.3 2.1E-11 4.6E-16 111.5 9.8 69 392-472 89-157 (191)
66 KOG1882 Transcriptional regula 99.2 1.5E-11 3.2E-16 109.2 6.7 95 365-472 171-278 (293)
67 smart00240 FHA Forkhead associ 99.1 5.2E-11 1.1E-15 84.0 5.0 48 394-446 1-50 (52)
68 COG3456 Predicted component of 99.1 1.1E-10 2.3E-15 113.1 8.5 87 381-483 19-106 (430)
69 PF05834 Lycopene_cycl: Lycope 99.1 8.2E-09 1.8E-13 104.6 21.7 217 3-237 64-290 (374)
70 KOG1881 Anion exchanger adapto 98.8 2.1E-09 4.5E-14 110.2 3.5 80 391-481 176-266 (793)
71 KOG1880 Nuclear inhibitor of p 98.5 1.3E-07 2.9E-12 87.3 3.9 75 391-474 37-113 (337)
72 KOG0615 Serine/threonine prote 97.4 0.00024 5.3E-09 69.6 6.3 86 381-481 57-157 (475)
73 TIGR02500 type_III_yscD type I 97.2 0.0017 3.6E-08 66.5 8.9 77 380-472 12-89 (410)
74 TIGR02352 thiamin_ThiO glycine 97.0 0.032 6.8E-07 55.5 16.3 61 22-83 131-194 (337)
75 KOG2293 Daxx-interacting prote 96.9 0.0026 5.6E-08 64.2 7.2 88 382-482 442-532 (547)
76 PRK01747 mnmC bifunctional tRN 96.8 0.042 9E-07 60.3 17.0 62 22-83 402-464 (662)
77 KOG0245 Kinesin-like protein [ 96.8 0.0039 8.4E-08 67.5 8.2 82 383-480 472-555 (1221)
78 PRK12409 D-amino acid dehydrog 96.6 0.12 2.6E-06 53.1 17.8 56 28-83 197-259 (410)
79 TIGR01377 soxA_mon sarcosine o 96.6 0.063 1.4E-06 54.4 15.2 67 21-88 138-207 (380)
80 PF01266 DAO: FAD dependent ox 96.5 0.029 6.3E-07 56.0 12.2 64 20-84 139-205 (358)
81 PRK12416 protoporphyrinogen ox 96.5 0.43 9.3E-06 49.9 21.1 51 29-79 227-277 (463)
82 TIGR03197 MnmC_Cterm tRNA U-34 96.4 0.2 4.3E-06 50.9 17.6 64 20-83 127-191 (381)
83 TIGR00562 proto_IX_ox protopor 96.3 0.57 1.2E-05 48.9 20.8 53 29-81 226-278 (462)
84 PRK11259 solA N-methyltryptoph 96.2 0.18 4E-06 50.9 15.9 58 25-83 146-205 (376)
85 TIGR01373 soxB sarcosine oxida 95.6 0.25 5.4E-06 50.7 14.2 64 24-88 179-247 (407)
86 KOG1892 Actin filament-binding 95.6 0.033 7.1E-07 60.0 7.3 96 369-480 358-454 (1629)
87 TIGR01663 PNK-3'Pase polynucle 95.5 0.072 1.6E-06 55.9 9.7 75 381-472 25-101 (526)
88 PRK00711 D-amino acid dehydrog 95.5 0.55 1.2E-05 48.2 16.2 58 25-83 198-258 (416)
89 TIGR02730 carot_isom carotene 95.2 0.48 1E-05 50.0 14.9 61 28-88 229-292 (493)
90 PRK11883 protoporphyrinogen ox 95.1 4.3 9.3E-05 42.0 21.5 54 29-82 222-275 (451)
91 PRK04176 ribulose-1,5-biphosph 95.0 0.056 1.2E-06 51.6 6.3 67 22-88 98-179 (257)
92 TIGR02734 crtI_fam phytoene de 94.5 1.2 2.5E-05 47.2 15.5 61 28-88 219-282 (502)
93 PF01593 Amino_oxidase: Flavin 94.5 0.86 1.9E-05 46.5 14.3 45 41-85 224-268 (450)
94 PRK11728 hydroxyglutarate oxid 94.4 0.14 3E-06 52.4 8.1 68 20-88 141-211 (393)
95 PF13738 Pyr_redox_3: Pyridine 94.3 0.099 2.1E-06 47.7 6.2 61 25-85 79-141 (203)
96 KOG2415 Electron transfer flav 94.1 3.4 7.4E-05 41.5 16.2 231 22-265 177-445 (621)
97 PLN02612 phytoene desaturase 94.0 1.6 3.5E-05 46.9 15.3 52 29-80 309-364 (567)
98 TIGR00292 thiazole biosynthesi 94.0 0.15 3.2E-06 48.6 6.7 66 23-88 95-176 (254)
99 PRK13369 glycerol-3-phosphate 93.9 2.1 4.6E-05 45.2 16.0 65 24-88 151-222 (502)
100 PRK07233 hypothetical protein; 93.6 2.7 5.9E-05 43.2 15.9 54 29-82 199-254 (434)
101 PRK05257 malate:quinone oxidor 92.4 0.45 9.7E-06 50.1 8.0 70 19-88 174-253 (494)
102 PLN02568 polyamine oxidase 92.4 0.41 8.9E-06 51.0 7.8 51 29-79 243-293 (539)
103 COG2081 Predicted flavoprotein 92.1 0.38 8.3E-06 47.9 6.6 56 28-83 111-168 (408)
104 TIGR03467 HpnE squalene-associ 91.9 5.3 0.00011 40.8 15.3 53 30-82 199-254 (419)
105 PRK12266 glpD glycerol-3-phosp 91.5 6.2 0.00013 41.8 15.5 59 25-83 152-217 (508)
106 COG0579 Predicted dehydrogenas 91.5 0.66 1.4E-05 47.4 7.7 65 20-84 145-213 (429)
107 TIGR02733 desat_CrtD C-3',4' d 91.5 4.9 0.00011 42.3 14.7 54 28-81 232-293 (492)
108 PLN02976 amine oxidase 91.3 38 0.00082 40.3 22.5 47 29-78 937-993 (1713)
109 PLN02676 polyamine oxidase 89.7 0.93 2E-05 47.7 7.3 56 28-83 224-287 (487)
110 KOG0241 Kinesin-like protein [ 89.7 0.91 2E-05 49.5 6.9 75 392-481 467-542 (1714)
111 PRK04965 NADH:flavorubredoxin 89.4 0.93 2E-05 45.9 6.8 44 40-83 197-240 (377)
112 TIGR00275 flavoprotein, HI0933 88.8 1.1 2.4E-05 45.8 6.9 55 27-82 104-160 (400)
113 PF03486 HI0933_like: HI0933-l 88.5 0.97 2.1E-05 46.3 6.2 58 26-83 107-167 (409)
114 PRK13339 malate:quinone oxidor 88.2 1.7 3.6E-05 45.7 7.8 69 20-88 176-254 (497)
115 PF01134 GIDA: Glucose inhibit 88.1 2.1 4.5E-05 43.3 8.1 61 20-81 87-151 (392)
116 PLN02576 protoporphyrinogen ox 87.8 39 0.00085 35.5 20.5 50 29-78 240-293 (496)
117 PF13454 NAD_binding_9: FAD-NA 87.4 2.7 5.8E-05 36.7 7.6 59 22-80 88-155 (156)
118 PTZ00383 malate:quinone oxidor 87.4 1.7 3.7E-05 45.7 7.3 65 23-88 206-280 (497)
119 PRK05249 soluble pyridine nucl 87.0 1.7 3.8E-05 45.3 7.2 57 30-86 218-276 (461)
120 PLN02464 glycerol-3-phosphate 86.9 15 0.00033 40.0 14.5 65 24-88 228-303 (627)
121 PRK15317 alkyl hydroperoxide r 86.9 1.7 3.6E-05 46.2 7.1 57 26-82 264-322 (517)
122 TIGR01320 mal_quin_oxido malat 86.6 1.6 3.4E-05 46.0 6.6 69 20-88 170-247 (483)
123 PRK05192 tRNA uridine 5-carbox 86.4 1.8 4E-05 46.3 6.9 59 24-83 96-158 (618)
124 TIGR02732 zeta_caro_desat caro 85.8 29 0.00062 36.4 15.5 33 200-235 441-473 (474)
125 PF00070 Pyr_redox: Pyridine n 84.7 2.5 5.5E-05 32.0 5.3 27 40-66 54-80 (80)
126 COG1231 Monoamine oxidase [Ami 83.3 3.2 6.9E-05 42.3 6.6 37 42-78 222-258 (450)
127 TIGR01292 TRX_reduct thioredox 83.0 3.2 6.8E-05 40.2 6.6 54 28-82 57-112 (300)
128 PRK09897 hypothetical protein; 82.9 3.7 8E-05 43.6 7.3 40 41-80 124-164 (534)
129 PLN02268 probable polyamine ox 82.7 3.2 6.9E-05 42.9 6.8 40 41-80 211-250 (435)
130 PRK06116 glutathione reductase 82.6 3.5 7.6E-05 42.9 7.1 56 30-85 210-268 (450)
131 PRK09231 fumarate reductase fl 82.3 4 8.7E-05 44.0 7.5 57 29-85 134-199 (582)
132 PRK09754 phenylpropionate diox 81.1 4.1 8.9E-05 41.6 6.8 44 40-84 200-243 (396)
133 TIGR03140 AhpF alkyl hydropero 80.6 4.5 9.8E-05 42.9 7.1 56 27-82 266-323 (515)
134 TIGR03329 Phn_aa_oxid putative 80.4 4.6 0.0001 42.2 7.0 60 22-83 177-238 (460)
135 PRK07846 mycothione reductase; 79.3 6.1 0.00013 41.2 7.4 46 40-85 220-265 (451)
136 COG0665 DadA Glycine/D-amino a 79.0 56 0.0012 32.8 14.4 64 22-86 150-216 (387)
137 PRK07845 flavoprotein disulfid 78.1 6.5 0.00014 41.1 7.3 56 30-85 220-277 (466)
138 PLN02487 zeta-carotene desatur 77.5 1.1E+02 0.0024 33.0 16.4 35 201-238 518-552 (569)
139 TIGR03378 glycerol3P_GlpB glyc 77.0 7.5 0.00016 39.8 7.0 58 26-83 261-324 (419)
140 TIGR01350 lipoamide_DH dihydro 76.9 7 0.00015 40.8 7.2 58 29-86 212-273 (461)
141 PRK07804 L-aspartate oxidase; 76.9 5.3 0.00012 42.7 6.3 59 28-86 144-214 (541)
142 TIGR00551 nadB L-aspartate oxi 76.6 6.7 0.00014 41.3 6.9 60 28-87 128-194 (488)
143 PRK06416 dihydrolipoamide dehy 76.0 7.2 0.00016 40.7 7.0 57 29-85 214-275 (462)
144 PLN02507 glutathione reductase 75.7 8.2 0.00018 40.8 7.3 46 40-85 258-303 (499)
145 COG2509 Uncharacterized FAD-de 75.7 7.1 0.00015 39.8 6.3 53 30-82 175-230 (486)
146 PLN02172 flavin-containing mon 75.3 8 0.00017 40.4 6.9 59 25-83 108-174 (461)
147 TIGR03452 mycothione_red mycot 74.7 10 0.00022 39.5 7.6 45 40-84 223-267 (452)
148 TIGR01424 gluta_reduc_2 glutat 72.9 9.8 0.00021 39.5 6.9 56 30-85 209-266 (446)
149 TIGR01176 fum_red_Fp fumarate 72.0 12 0.00026 40.4 7.5 57 28-84 132-197 (580)
150 PTZ00363 rab-GDP dissociation 70.4 10 0.00022 39.3 6.3 52 29-80 233-288 (443)
151 PF06039 Mqo: Malate:quinone o 70.2 12 0.00026 38.5 6.5 64 20-83 173-245 (488)
152 TIGR01812 sdhA_frdA_Gneg succi 70.0 11 0.00023 40.6 6.7 58 29-86 130-195 (566)
153 TIGR03364 HpnW_proposed FAD de 69.6 15 0.00033 36.8 7.3 57 22-83 139-198 (365)
154 TIGR03862 flavo_PP4765 unchara 69.2 12 0.00027 37.7 6.4 54 27-82 85-141 (376)
155 PF12831 FAD_oxidored: FAD dep 69.1 1.6 3.4E-05 45.2 0.0 63 23-85 85-153 (428)
156 PLN02328 lysine-specific histo 67.3 12 0.00026 41.8 6.3 49 29-81 438-486 (808)
157 TIGR01813 flavo_cyto_c flavocy 66.0 16 0.00034 37.9 6.7 57 28-84 130-194 (439)
158 PRK07818 dihydrolipoamide dehy 65.0 18 0.00039 37.8 7.0 57 29-85 214-276 (466)
159 PRK06327 dihydrolipoamide dehy 64.9 17 0.00038 38.0 6.9 57 29-85 225-287 (475)
160 COG1232 HemY Protoporphyrinoge 64.8 16 0.00034 37.8 6.3 48 29-77 216-263 (444)
161 COG1233 Phytoene dehydrogenase 64.3 12 0.00026 39.4 5.5 53 28-80 224-279 (487)
162 PF00743 FMO-like: Flavin-bind 64.1 17 0.00036 38.7 6.5 60 24-83 80-151 (531)
163 PLN02529 lysine-specific histo 63.2 18 0.00039 40.1 6.7 47 28-78 357-403 (738)
164 PLN03000 amine oxidase 62.7 19 0.0004 40.5 6.7 48 28-79 381-428 (881)
165 TIGR01423 trypano_reduc trypan 62.2 21 0.00045 37.6 6.8 57 29-85 232-291 (486)
166 PF13434 K_oxygenase: L-lysine 62.0 19 0.00041 36.0 6.1 40 41-80 294-339 (341)
167 TIGR00136 gidA glucose-inhibit 61.6 22 0.00047 38.3 6.8 59 24-83 92-155 (617)
168 PTZ00052 thioredoxin reductase 61.2 24 0.00051 37.3 7.1 46 40-85 236-281 (499)
169 PF13275 S4_2: S4 domain; PDB: 61.1 6.6 0.00014 28.6 2.0 28 439-472 33-60 (65)
170 TIGR02374 nitri_red_nirB nitri 60.9 19 0.00041 40.5 6.5 44 40-83 196-239 (785)
171 COG1251 NirB NAD(P)H-nitrite r 60.2 6.5 0.00014 42.5 2.5 41 41-81 202-242 (793)
172 COG1249 Lpd Pyruvate/2-oxoglut 59.5 39 0.00085 35.1 8.1 59 29-87 215-277 (454)
173 PRK06912 acoL dihydrolipoamide 59.4 28 0.00061 36.2 7.2 56 29-85 212-271 (458)
174 PRK06115 dihydrolipoamide dehy 58.6 26 0.00056 36.6 6.8 56 30-85 217-279 (466)
175 PRK11101 glpA sn-glycerol-3-ph 58.5 23 0.00049 38.0 6.4 63 24-86 145-216 (546)
176 PRK11507 ribosome-associated p 58.5 15 0.00033 27.1 3.4 28 439-472 37-64 (70)
177 TIGR02485 CobZ_N-term precorri 58.0 23 0.00051 36.5 6.3 60 29-88 124-189 (432)
178 TIGR01421 gluta_reduc_1 glutat 57.8 29 0.00063 36.1 6.9 56 30-85 209-268 (450)
179 COG2072 TrkA Predicted flavopr 57.7 45 0.00098 34.6 8.3 56 27-82 85-144 (443)
180 PRK08010 pyridine nucleotide-d 57.6 31 0.00067 35.7 7.1 56 29-85 200-257 (441)
181 COG2501 S4-like RNA binding pr 57.5 20 0.00043 26.7 3.9 28 439-472 37-64 (73)
182 PRK05945 sdhA succinate dehydr 56.5 34 0.00074 36.9 7.4 56 29-84 136-199 (575)
183 PRK06467 dihydrolipoamide dehy 56.1 41 0.00089 35.2 7.8 56 30-85 217-277 (471)
184 TIGR03377 glycerol3P_GlpA glyc 55.3 36 0.00078 36.1 7.3 60 24-83 124-191 (516)
185 TIGR02053 MerA mercuric reduct 55.2 33 0.00072 35.7 7.0 56 30-85 209-269 (463)
186 TIGR03385 CoA_CoA_reduc CoA-di 54.9 29 0.00064 35.7 6.4 53 30-84 181-235 (427)
187 PRK06370 mercuric reductase; V 53.9 40 0.00086 35.2 7.3 56 30-85 214-274 (463)
188 PRK08274 tricarballylate dehyd 53.7 29 0.00062 36.2 6.2 61 28-88 131-198 (466)
189 PTZ00318 NADH dehydrogenase-li 53.5 30 0.00066 35.6 6.2 49 30-82 230-280 (424)
190 PRK14694 putative mercuric red 52.4 39 0.00084 35.3 6.9 56 29-85 219-276 (468)
191 PRK14989 nitrite reductase sub 52.4 35 0.00076 38.6 6.9 45 40-84 201-247 (847)
192 PRK06069 sdhA succinate dehydr 52.2 40 0.00087 36.4 7.1 57 30-86 139-204 (577)
193 PRK07251 pyridine nucleotide-d 52.1 41 0.0009 34.7 7.0 55 29-84 199-255 (438)
194 PRK06481 fumarate reductase fl 50.5 43 0.00094 35.4 6.9 60 29-88 191-257 (506)
195 PRK14727 putative mercuric red 50.2 49 0.0011 34.7 7.2 55 30-85 230-286 (479)
196 KOG0685 Flavin-containing amin 50.1 27 0.00059 36.0 4.9 35 43-77 246-281 (498)
197 PRK08401 L-aspartate oxidase; 49.8 44 0.00096 34.9 6.8 58 28-86 120-179 (466)
198 PRK05329 anaerobic glycerol-3- 49.3 51 0.0011 34.0 7.0 53 29-81 260-317 (422)
199 TIGR02731 phytoene_desat phyto 48.5 39 0.00085 35.0 6.2 59 29-88 214-281 (453)
200 PRK09564 coenzyme A disulfide 47.7 47 0.001 34.3 6.6 54 29-83 192-247 (444)
201 TIGR01438 TGR thioredoxin and 46.4 57 0.0012 34.3 7.0 46 40-85 234-282 (484)
202 PRK13512 coenzyme A disulfide 46.3 48 0.001 34.3 6.4 51 30-84 191-243 (438)
203 KOG1346 Programmed cell death 46.1 15 0.00033 37.0 2.4 41 40-80 407-447 (659)
204 KOG1336 Monodehydroascorbate/f 46.1 50 0.0011 34.1 6.1 44 41-84 270-315 (478)
205 PRK06292 dihydrolipoamide dehy 45.9 78 0.0017 32.9 7.9 56 30-85 212-271 (460)
206 PRK06175 L-aspartate oxidase; 45.7 61 0.0013 33.5 7.0 56 29-84 129-191 (433)
207 TIGR03169 Nterm_to_SelD pyridi 44.8 41 0.00089 33.6 5.5 39 40-82 205-243 (364)
208 COG1188 Ribosome-associated he 44.1 43 0.00092 26.6 4.1 34 441-482 36-69 (100)
209 PF09465 LBR_tudor: Lamin-B re 43.4 40 0.00088 23.5 3.5 32 39-70 17-48 (55)
210 PF13434 K_oxygenase: L-lysine 43.0 44 0.00095 33.4 5.2 63 24-86 91-163 (341)
211 KOG1335 Dihydrolipoamide dehyd 42.9 94 0.002 31.4 7.2 55 29-85 257-317 (506)
212 PRK06854 adenylylsulfate reduc 38.7 98 0.0021 33.7 7.5 57 27-83 131-196 (608)
213 PRK06134 putative FAD-binding 38.6 93 0.002 33.6 7.3 54 30-83 219-279 (581)
214 PRK09754 phenylpropionate diox 38.4 70 0.0015 32.5 6.1 42 40-83 72-113 (396)
215 PRK13748 putative mercuric red 37.9 89 0.0019 33.5 7.1 55 30-85 312-368 (561)
216 PRK05976 dihydrolipoamide dehy 37.7 1E+02 0.0022 32.2 7.3 56 30-85 223-284 (472)
217 PRK07121 hypothetical protein; 36.9 1E+02 0.0023 32.3 7.3 56 28-83 177-240 (492)
218 COG5131 URM1 Ubiquitin-like pr 36.9 39 0.00084 26.0 2.8 43 427-472 48-92 (96)
219 COG0492 TrxB Thioredoxin reduc 36.8 1.2E+02 0.0026 29.7 7.1 57 25-83 58-116 (305)
220 KOG1399 Flavin-containing mono 36.1 83 0.0018 32.7 6.1 60 22-81 84-152 (448)
221 PF00890 FAD_binding_2: FAD bi 35.7 71 0.0015 32.6 5.7 57 27-83 140-204 (417)
222 TIGR01292 TRX_reduct thioredox 34.7 1.4E+02 0.0029 28.6 7.3 44 40-83 191-239 (300)
223 COG3486 IucD Lysine/ornithine 34.0 84 0.0018 31.9 5.4 48 41-88 293-346 (436)
224 PRK10262 thioredoxin reductase 33.9 1.4E+02 0.0029 29.3 7.2 54 30-83 187-249 (321)
225 KOG1336 Monodehydroascorbate/f 33.5 71 0.0015 33.0 5.0 43 41-86 142-184 (478)
226 PRK09564 coenzyme A disulfide 33.3 92 0.002 32.1 6.1 44 40-83 70-116 (444)
227 PTZ00058 glutathione reductase 32.4 1.2E+02 0.0026 32.5 6.9 56 30-85 280-339 (561)
228 PRK07208 hypothetical protein; 32.0 96 0.0021 32.4 6.0 56 29-84 219-282 (479)
229 PRK08275 putative oxidoreducta 31.4 1.1E+02 0.0024 32.7 6.5 56 29-84 138-202 (554)
230 COG3380 Predicted NAD/FAD-depe 31.3 56 0.0012 31.3 3.6 55 20-77 100-155 (331)
231 cd01764 Urm1 Urm1-like ubuitin 30.7 43 0.00094 26.3 2.4 28 441-471 62-89 (94)
232 PRK08071 L-aspartate oxidase; 30.5 1.2E+02 0.0025 32.2 6.3 56 29-84 131-192 (510)
233 KOG4254 Phytoene desaturase [C 30.3 65 0.0014 33.2 4.0 58 29-86 265-325 (561)
234 PRK01777 hypothetical protein; 29.9 46 0.001 26.3 2.4 29 437-472 48-76 (95)
235 PRK09077 L-aspartate oxidase; 29.4 1.4E+02 0.003 31.9 6.8 60 28-87 138-212 (536)
236 PRK08205 sdhA succinate dehydr 28.3 1.7E+02 0.0038 31.5 7.3 57 28-84 140-208 (583)
237 PRK07573 sdhA succinate dehydr 27.9 1.6E+02 0.0036 32.2 7.1 53 32-84 174-234 (640)
238 PRK06263 sdhA succinate dehydr 27.4 1.5E+02 0.0032 31.8 6.5 55 29-83 135-198 (543)
239 TIGR03169 Nterm_to_SelD pyridi 27.2 83 0.0018 31.4 4.4 40 41-83 69-108 (364)
240 TIGR02374 nitri_red_nirB nitri 26.2 1.2E+02 0.0025 34.2 5.7 41 40-82 68-108 (785)
241 cd00754 MoaD Ubiquitin domain 25.9 61 0.0013 24.1 2.4 25 439-470 50-74 (80)
242 PRK12837 3-ketosteroid-delta-1 25.6 2.4E+02 0.0052 29.9 7.6 41 40-80 188-234 (513)
243 PTZ00318 NADH dehydrogenase-li 25.5 1.6E+02 0.0034 30.3 6.1 39 45-83 80-126 (424)
244 TIGR03385 CoA_CoA_reduc CoA-di 25.4 1.5E+02 0.0033 30.4 6.0 42 41-82 59-103 (427)
245 TIGR02988 YaaA_near_RecF S4 do 25.2 60 0.0013 22.8 2.1 25 439-469 34-58 (59)
246 PRK04965 NADH:flavorubredoxin 25.0 1.4E+02 0.003 30.0 5.6 40 40-82 72-111 (377)
247 PRK06944 sulfur carrier protei 25.0 52 0.0011 23.5 1.8 12 458-469 47-58 (65)
248 TIGR01687 moaD_arch MoaD famil 24.9 56 0.0012 25.1 2.1 24 441-469 58-81 (88)
249 PRK12843 putative FAD-binding 24.7 1.8E+02 0.004 31.3 6.7 60 29-88 222-288 (578)
250 PF07992 Pyr_redox_2: Pyridine 24.4 61 0.0013 28.9 2.6 43 41-83 73-123 (201)
251 PRK06452 sdhA succinate dehydr 24.4 2.3E+02 0.0049 30.5 7.3 56 29-84 137-200 (566)
252 PRK12842 putative succinate de 24.4 2.3E+02 0.0049 30.6 7.3 55 29-83 215-276 (574)
253 PRK06488 sulfur carrier protei 24.0 46 0.001 23.9 1.4 12 458-469 47-58 (65)
254 TIGR01683 thiS thiamine biosyn 23.8 58 0.0013 23.3 1.8 12 458-469 46-57 (64)
255 PLN02546 glutathione reductase 23.8 2.1E+02 0.0044 30.8 6.7 46 40-85 307-353 (558)
256 PRK10348 ribosome-associated h 23.7 1.1E+02 0.0023 25.9 3.6 34 441-482 36-69 (133)
257 PRK14989 nitrite reductase sub 23.6 1.4E+02 0.0031 33.9 5.7 42 40-83 73-114 (847)
258 KOG2820 FAD-dependent oxidored 23.6 7.5E+02 0.016 24.8 12.5 66 21-86 146-218 (399)
259 PF01479 S4: S4 domain; Inter 23.5 48 0.001 22.0 1.3 23 439-467 26-48 (48)
260 PRK07512 L-aspartate oxidase; 23.1 1.7E+02 0.0036 31.1 5.9 56 29-84 137-199 (513)
261 PF10387 DUF2442: Protein of u 22.8 1.4E+02 0.003 22.3 3.9 25 49-73 1-26 (79)
262 PF04710 Pellino: Pellino; In 22.8 3.3E+02 0.0072 27.5 7.2 52 391-445 95-166 (416)
263 PRK05659 sulfur carrier protei 22.7 52 0.0011 23.7 1.4 23 439-469 37-59 (66)
264 PRK06437 hypothetical protein; 22.6 88 0.0019 22.8 2.6 22 441-469 39-60 (67)
265 TIGR01811 sdhA_Bsu succinate d 22.2 3.1E+02 0.0068 29.7 7.8 45 40-84 147-198 (603)
266 PRK13512 coenzyme A disulfide 21.9 1.8E+02 0.0039 30.0 5.8 44 40-83 72-118 (438)
267 cd00565 ThiS ThiaminS ubiquiti 21.6 83 0.0018 22.6 2.3 12 458-469 47-58 (65)
268 TIGR03140 AhpF alkyl hydropero 20.8 3.1E+02 0.0067 29.0 7.4 43 40-82 402-450 (515)
269 PRK08053 sulfur carrier protei 20.7 67 0.0015 23.2 1.7 13 457-469 47-59 (66)
270 smart00363 S4 S4 RNA-binding d 20.6 1.2E+02 0.0025 20.4 2.9 26 439-471 26-52 (60)
271 TIGR03143 AhpF_homolog putativ 20.3 2.5E+02 0.0054 30.1 6.6 56 26-83 58-115 (555)
272 PRK07843 3-ketosteroid-delta-1 20.3 3.3E+02 0.0072 29.2 7.5 54 30-83 210-270 (557)
No 1
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=100.00 E-value=3.2e-76 Score=617.57 Aligned_cols=497 Identities=74% Similarity=1.271 Sum_probs=434.3
Q ss_pred eEEeecCCCcccccCCCeEEEeeHHHHHHHHHhccCCCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCch
Q 010723 4 RYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 83 (502)
Q Consensus 4 w~~~f~~~~~~~~~~~p~~~~i~R~~L~~~L~~~~~~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 83 (502)
|..+|+...+..+.+.|.++.|+|..|+++|.+.++...++++++|++++.++++|++++++|+++++|+||||||++|+
T Consensus 170 ~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S~ 249 (668)
T PLN02927 170 WYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWSK 249 (668)
T ss_pred eEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCCCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCcH
Confidence 55566655554556678899999999999999988776688999999999999999999999999999999999999999
Q ss_pred hhccccCCCCCcccceEEEEEEecCCCCCccccceEEEecCceEEEEEeCCCCeEEEEEEEcCCCCCCCCCcchHHHHHH
Q 010723 84 VRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLK 163 (502)
Q Consensus 84 vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 163 (502)
+|+.+++...+.|.++.+|+++++..+.+.....+..+.++..+++.++.+++.+.|+.+...+......++...+++++
T Consensus 250 vR~~l~g~~~~~~sG~~~~rgi~~~~p~~~~~~~~~~~~G~~~~~v~~~v~~g~~~~~~f~~~p~~~~~~~~~~~e~L~~ 329 (668)
T PLN02927 250 VRNNLFGRSEATYSGYTCYTGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYAFHEEPAGGADAPNGMKKRLFE 329 (668)
T ss_pred HHHHhcCCCCCcccceEEEEEEcCCCcccccccceEEEEcCCeEEEEEcCCCCeEEEEEEEECCccccccchhHHHHHHH
Confidence 99999877778899999999887654443333445566788888888888888788877665543222334566788899
Q ss_pred HhhCCChHHHHHHHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCC
Q 010723 164 IFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSN 243 (502)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~ 243 (502)
.|..|++.+.+++...+...+..+.++...+..+|.+|||+|+|||||+|+|+.|||+|+||+||..|+++|..+++...
T Consensus 330 ~f~~w~~~v~elI~~t~~~~i~~~~iyd~~p~~~W~~grVvLiGDAAH~~~P~~GqG~n~AieDa~~La~~L~~~~~~~~ 409 (668)
T PLN02927 330 IFDGWCDNVLDLLHATEEDAILRRDIYDRSPGFTWGKGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSV 409 (668)
T ss_pred HhccCCHHHHHHHHhCccccceeeeEEeccCCCccccCcEEEEcCccCCCCCccccchHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999888776555667788887777899999999999999999999999999999999999999988764321
Q ss_pred CCCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCcccceeeeeccchhHHH
Q 010723 244 ESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGGRFFIDLAMPLMLS 323 (502)
Q Consensus 244 ~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 323 (502)
..+.+.++..+|+.|+++|++++..++..+++...++..++...+.++.|+.+++.++++.+++...|+++..+||.|+.
T Consensus 410 ~~~~~~~~~~aL~~Ye~~R~~rv~~i~~~ar~a~~~~~~~~~y~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (668)
T PLN02927 410 ETNTPVDVVSSLKRYEESRRLRVAIIHAMARMAAIMASTYKAYLGVGLGPLSFLTKFRVPHPGRVGGRFFVDIAMPLMLD 489 (668)
T ss_pred ccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcCCCCCCceeeeeeeecccHHHhh
Confidence 12233467899999999999999999999999999988888777888899999999999999999999999999999999
Q ss_pred hHhcCCCCCCCCCCCcccCCcccchhhhhhccCchhhhhccCCcEEEEecCCCCCcccceEEeecCCCCCEEEcCCCCCC
Q 010723 324 WVLGGNSSKLEGRSPCCKLSDKASDNLRTWFRDDDALERAMNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHED 403 (502)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~ 403 (502)
|....+.+.++|++..|.++||++..|..|+++++++|++++++|+|++.++++...+.++|. +.++.+++|||.++++
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~~~~l~-~~~~~p~~iG~~~~~~ 568 (668)
T PLN02927 490 WVLGGNSEKLEGRPPSCRLTDKADDRLREWFEDDDALERTIKGEWYLIPHGDDCCVSETLCLT-KDEDQPCIVGSEPDQD 568 (668)
T ss_pred hhhcCCccccCCCCCccccccchhHHHHHHhcccHHHHHhhcCCeEEEecCCCCcccceeeee-cCCCCCeEecCCCCcC
Confidence 999999999999999999999999999999999999999999999999998888877889998 8889999999999999
Q ss_pred CCCceeeeCCccccccceEEEEeCCeEEEEEcCCccceeecCCCCceeecCCCCcEEeCCCCEEEeCCCceEEEEEEEec
Q 010723 404 FSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVIG 483 (502)
Q Consensus 404 ~~~~~i~~~~~~vSr~Ha~i~~~~~~~~i~d~~s~nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~~~~~ 483 (502)
.+...|+|+++.||+.||+|.++++.|+|+||+|+||||||++.|++++++|+.+..|++||+|+||+.++..|++++..
T Consensus 569 ~~~~~i~i~~~~vS~~Ha~i~~~~~~~~~~Dl~S~nGT~v~~~~~~r~~~~p~~~~~l~~~d~I~~g~~~~~~fr~~~~~ 648 (668)
T PLN02927 569 FPGMRIVIPSSQVSKMHARVIYKDGAFFLMDLRSEHGTYVTDNEGRRYRATPNFPARFRSSDIIEFGSDKKAAFRVKVIR 648 (668)
T ss_pred CCCceEEecCCccChhHeEEEEECCEEEEEECCCCCccEEeCCCCceEecCCCCceEeCCCCEEEeCCCcceeEEEEeec
Confidence 88888899999999999999999999999999999999999999988899999999999999999999888899999999
Q ss_pred cCCCCCcccccc--ccccccC
Q 010723 484 TPPNNNSERKEA--GEILQAV 502 (502)
Q Consensus 484 ~~~~~~~~~~~~--~~~~~~~ 502 (502)
.+|... .++++ .+++|+|
T Consensus 649 ~~~~~~-~~~~~~~~~~~~~~ 668 (668)
T PLN02927 649 KTPKST-RKNESNNDKLLQTA 668 (668)
T ss_pred CCCcch-hhcccchhhhhhcC
Confidence 999887 55554 5888875
No 2
>PRK06753 hypothetical protein; Provisional
Probab=100.00 E-value=1.9e-33 Score=285.23 Aligned_cols=267 Identities=28% Similarity=0.428 Sum_probs=202.9
Q ss_pred CeEEEeeHHHHHHHHHhccCCCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhhccccCCCCCcccce
Q 010723 20 PVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGY 99 (502)
Q Consensus 20 p~~~~i~R~~L~~~L~~~~~~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~ 99 (502)
+.++.++|..|+++|.+.+....++++++|++++.+++++++++++|+++++|+||||||.+|.||+.+.......|.+.
T Consensus 90 ~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~vR~~~~~~~~~~~~g~ 169 (373)
T PRK06753 90 TLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKVRQSVNADSKVRYQGY 169 (373)
T ss_pred CccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchHHHHHhCCCCCceEcce
Confidence 45789999999999999987777999999999998888999999999999999999999999999999865555667777
Q ss_pred EEEEEEecCCCCCccccceEEEecCceEEEEEeCCCCeEEEEEEEcCCCCCCCCCcchHHHHHHHhhCCChHHHHHHHcC
Q 010723 100 TCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILAT 179 (502)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 179 (502)
.++.+.+............. ++..++.++++|..++...|++................+.+.+.|+.|.+.+.+++...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 248 (373)
T PRK06753 170 TCFRGLIDDIDLKLPDCAKE-YWGTKGRFGIVPLLNNQAYWFITINAKERDPKYSSFGKPHLQAYFNHYPNEVREILDKQ 248 (373)
T ss_pred EEEEEEeccccccCccceEE-EEcCCCEEEEEEcCCCeEEEEEEeccccCCcccccccHHHHHHHHhcCChHHHHHHHhC
Confidence 77777654222112222223 33445566777888888878765532211111222345678888999988888877665
Q ss_pred CccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHH
Q 010723 180 DEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYE 259 (502)
Q Consensus 180 ~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~ 259 (502)
....+..++++...+.++|..+||+|||||||+|+|+.|||+|+||+||..|+++|.. .+..++|+.|+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~~-----------~~~~~al~~Y~ 317 (373)
T PRK06753 249 SETGILHHDIYDLKPLKSFVYGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLNA-----------YDFEKALQRYD 317 (373)
T ss_pred CcccceeeccccccccccccCCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHhhh-----------ccHHHHHHHHH
Confidence 4433444556665667899999999999999999999999999999999999999953 24578999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCC
Q 010723 260 RARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHP 305 (502)
Q Consensus 260 ~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~ 305 (502)
++|++++..++..++.+..+ +....++...+|+..|...
T Consensus 318 ~~r~~~~~~~~~~s~~~~~~-------~~~~~~~~~~~r~~~l~~~ 356 (373)
T PRK06753 318 KIRVKHTAKVIKRSRKIGKI-------AQIESKLLVALRNRVMKRM 356 (373)
T ss_pred HHhhHHHHHHHHHHHHHhHH-------HhcCCchHHHHHHHHHHhC
Confidence 99999999999888875543 3344556677888776543
No 3
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=1.7e-34 Score=292.50 Aligned_cols=271 Identities=17% Similarity=0.141 Sum_probs=189.7
Q ss_pred CCeEEEeeHHHHHHHHHhccCC---CeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhhcccc-CCCCC
Q 010723 19 LPVTRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLF-GPQEA 94 (502)
Q Consensus 19 ~p~~~~i~R~~L~~~L~~~~~~---~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~-~~~~~ 94 (502)
.+++|+++|.+|++.|++++.. +.++++++++++.++++++++++.++ +++||+||||||++|+||+.+. +....
T Consensus 95 ~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~vR~~l~~~~~~~ 173 (374)
T PRK06617 95 AVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSKVRSHYFANEIEK 173 (374)
T ss_pred CCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCchhHHhcCCCcccc
Confidence 3579999999999999998743 56889999999999989999999876 8999999999999999999884 33345
Q ss_pred cccceEEEEEEecCCCCCccccceEEEecCceEEEEEeCCCCe-EEEEEEEcCCCCCCCCCcchHHHHHHHhhCCChHHH
Q 010723 95 IYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGK-MQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVV 173 (502)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 173 (502)
.| + .++.+.+.. ........++.|...+. +.++|++++. ..+++..... ..........+.+.+.+.... .
T Consensus 174 ~y-~-~~~~~~v~~-~~~~~~~~~~~~~~~g~-~~~lPl~~~~~~~~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~---~ 245 (374)
T PRK06617 174 PY-Q-TALTFNIKH-EKPHENCAMEHFLPLGP-FALLPLKDQYASSVIWSTSSD-QAALIVNLPVEEVRFLTQRNA---G 245 (374)
T ss_pred cC-C-eEEEEEEec-cCCCCCEEEEEecCCCC-EEEeECCCCCeEEEEEeCCHH-HHHHHHcCCHHHHHHHHHHhh---c
Confidence 56 3 455544432 22223334555555555 5556887664 3333332210 000000001123332222111 1
Q ss_pred HHHHcCC-ccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHH
Q 010723 174 DLILATD-EEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIV 252 (502)
Q Consensus 174 ~~~~~~~-~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~ 252 (502)
..+.... ......+++... .+.+|++|||+|+|||||+|+|++|||+|+||+||.+|+++|.. .
T Consensus 246 ~~~~~i~~~~~~~~~~l~~~-~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L~~--------------~ 310 (374)
T PRK06617 246 NSLGKITIDSEISSFPLKAR-IANRYFHNRIVLIADTAHTVHPLAGQGLNQGIKDIEILSMIVSN--------------N 310 (374)
T ss_pred hhcCceeeccceeEEEeeee-eccceecCCEEEEEcccccCCCCccccHHHHHHHHHHHHHHHcC--------------c
Confidence 1111111 112344566654 66899999999999999999999999999999999999998831 2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCccc--ceeeeeccchh
Q 010723 253 SALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVG--GRFFIDLAMPL 320 (502)
Q Consensus 253 ~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~--~~~~~~~~~~~ 320 (502)
.+|++|+++|++++..++.++.. +..+|++..+++..+|+.+|..+++++ ++++++++||.
T Consensus 311 ~~L~~Ye~~R~~~~~~~~~~t~~-------l~~~f~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g~ 373 (374)
T PRK06617 311 GTLQEYQKLRQEDNFIMYKLTDE-------LNNIFSNYSKNLRCLRQIGFKVINNFKPIKNLITSYAMGK 373 (374)
T ss_pred chHHHHHHHHhHHHHHHHHHHHH-------HHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHhcCC
Confidence 58999999999999987766665 445677888889999999999999988 48888888764
No 4
>PRK08013 oxidoreductase; Provisional
Probab=100.00 E-value=3.1e-33 Score=285.76 Aligned_cols=281 Identities=16% Similarity=0.180 Sum_probs=188.1
Q ss_pred eEEEeeHHHHHHHHHhccC---CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhhccc-cCCCCCcc
Q 010723 21 VTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL-FGPQEAIY 96 (502)
Q Consensus 21 ~~~~i~R~~L~~~L~~~~~---~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l-~~~~~~~~ 96 (502)
.+++++|..|+++|.+++. +++++++++|++++++++++++++.+|++++||+||||||++|+||+.+ ++.....|
T Consensus 104 ~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~vR~~~~~~~~~~~~ 183 (400)
T PRK08013 104 LGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANSWLRNKADIPLTFWDY 183 (400)
T ss_pred cEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcHHHHHcCCCcccccc
Confidence 4799999999999999773 3679999999999998899999999999999999999999999999998 44455556
Q ss_pred cceEEEEEEecCCCCCccccceEEEecCceEEEEEeCCCCe-EEEEEEEcCCCCCCCCCcchHHHHHHHhhC-CChHHHH
Q 010723 97 SGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGK-MQWYAFHKEPAGGVDGPEGKKERLLKIFEG-WCDNVVD 174 (502)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~ 174 (502)
.+. ++.+.+.. +.+........|.+++ .+.++|..++. ..+++..... ..........+.+.+.+.. |.+.+..
T Consensus 184 ~~~-~~~~~v~~-~~~~~~~~~~~~~~~g-~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~l~~ 259 (400)
T PRK08013 184 QHH-ALVATIRT-EEPHDAVARQVFHGDG-ILAFLPLSDPHLCSIVWSLSPE-EAQRMQQAPEEEFNRALAIAFDNRLGL 259 (400)
T ss_pred CcE-EEEEEEec-cCCCCCEEEEEEcCCC-CEEEEECCCCCeEEEEEEcCHH-HHHHHHcCCHHHHHHHHHHHHhHhhCc
Confidence 653 33333321 1122223344555554 55566776544 3444433211 0000001112233332221 1111111
Q ss_pred HHHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHH
Q 010723 175 LILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSA 254 (502)
Q Consensus 175 ~~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~ 254 (502)
. .... ....+++.. ..+++|++|||+|+|||||+|+|++|||+|+||+||.+|+++|..++..+ .......+
T Consensus 260 ~-~~~~--~~~~~~l~~-~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~~----~~~~~~~~ 331 (400)
T PRK08013 260 C-ELES--ERQVFPLTG-RYARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQG----KDIGQHLY 331 (400)
T ss_pred e-EecC--CccEEecce-eecccccCCcEEEEechhhcCCccccCchhhhHHHHHHHHHHHHHHHhcC----CCcccHHH
Confidence 0 0000 011233333 24679999999999999999999999999999999999999999876432 11122468
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCcccc--eeeeeccchh
Q 010723 255 LKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGG--RFFIDLAMPL 320 (502)
Q Consensus 255 L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~--~~~~~~~~~~ 320 (502)
|++|+++|++++..++..+.. +..+|.+..++...+|+++|.++++++. +++++++||+
T Consensus 332 L~~Y~~~R~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~g~ 392 (400)
T PRK08013 332 LRRYERSRKHSAALMLAGMQG-------FRDLFAGNNPAKKLLRDIGLKLADTLPGVKPQLIRQAMGL 392 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHcCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHccC
Confidence 999999999999877665544 3345666777788999999988877763 6677766653
No 5
>PRK07588 hypothetical protein; Provisional
Probab=100.00 E-value=2.9e-32 Score=278.18 Aligned_cols=268 Identities=22% Similarity=0.290 Sum_probs=189.7
Q ss_pred EEEeeHHHHHHHHHhccCC-CeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhhccccCCCC--Ccccc
Q 010723 22 TRVISRMTLQQILAKAVGD-EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQE--AIYSG 98 (502)
Q Consensus 22 ~~~i~R~~L~~~L~~~~~~-~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~--~~~~~ 98 (502)
.+.++|..|++.|.+++.. ++++++++|+++++++++++|++++|+++++|+||||||++|+||+.+++... ..|.+
T Consensus 97 ~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~vR~~~~~~~~~~~~~~g 176 (391)
T PRK07588 97 FTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSHVRRLVFGPERDFEHYLG 176 (391)
T ss_pred eEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCccchhhccCCccceEEEcC
Confidence 3689999999999987765 67999999999999999999999999999999999999999999998743322 34555
Q ss_pred eEEEEEEecCCCCCccccceEEEecCceEEEEEeCCCCeEEEEEEEcCCCCCC-CCCcchHHHHHHHhhCCChHHHHHHH
Q 010723 99 YTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGV-DGPEGKKERLLKIFEGWCDNVVDLIL 177 (502)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~ 177 (502)
...+....... .......+..|.+++.+++.+|+.++...+++....+.... ...+...+.+.+.+..|.+....++.
T Consensus 177 ~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 255 (391)
T PRK07588 177 CKVAACVVDGY-RPRDERTYVLYNEVGRQVARVALRGDRTLFLFIFRAEHDNPPLTPAEEKQLLRDQFGDVGWETPDILA 255 (391)
T ss_pred cEEEEEEcCCC-CCCCCceEEEEeCCCCEEEEEecCCCCeEEEEEEEcCCccccCCHHHHHHHHHHHhccCCccHHHHHH
Confidence 33333222111 11222335556677778888899877765554443221111 12234556677778776554444333
Q ss_pred cCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHHHHH
Q 010723 178 ATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKS 257 (502)
Q Consensus 178 ~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~ 257 (502)
.........+........++|++|||+|+|||||.|+|+.|||+|+||+||..|+++|.... .+...+|+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~---------~~~~~al~~ 326 (391)
T PRK07588 256 ALDDVEDLYFDVVSQIRMDRWSRGRVALVGDAAACPSLLGGEGSGLAITEAYVLAGELARAG---------GDHRRAFDA 326 (391)
T ss_pred hhhcccchheeeeeeeccCccccCCEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHHhcc---------CCHHHHHHH
Confidence 22211111111122235578999999999999999999999999999999999999997531 235789999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCC
Q 010723 258 YERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPG 306 (502)
Q Consensus 258 Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~ 306 (502)
|++.|++++..++..++. ...+|++..++...+|+..|..++
T Consensus 327 Y~~~R~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~R~~~~~~~~ 368 (391)
T PRK07588 327 YEKRLRPFIAGKQAAAAK-------FLSVFAPKTRFGLYVRNIAMKIMN 368 (391)
T ss_pred HHHHHHHHHHHHHhhccc-------ccccccCCCHHHHHHHHHHHHHhc
Confidence 999999999988777765 334556666677788999887776
No 6
>PRK06475 salicylate hydroxylase; Provisional
Probab=100.00 E-value=9.2e-32 Score=275.07 Aligned_cols=261 Identities=24% Similarity=0.339 Sum_probs=191.0
Q ss_pred EEeeHHHHHHHHHhccC---CCeEecCCeEEEEEeeCCeEEEEEc---cCcEEEeeEEEEecCCCchhhccccCCCCCcc
Q 010723 23 RVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLE---NGQCYAGDLLIGADGIWSKVRKNLFGPQEAIY 96 (502)
Q Consensus 23 ~~i~R~~L~~~L~~~~~---~~~v~~~~~v~~i~~~~~~v~v~~~---dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~ 96 (502)
+.++|..|++.|.+++. .+.++++++|++++++++++++++. ++++++||+||||||++|.||+++. .....|
T Consensus 102 ~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~vR~~~~-~~~~~~ 180 (400)
T PRK06475 102 IVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSMLRAKAG-FSKARF 180 (400)
T ss_pred eeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccHhHHhhcC-CCCCCc
Confidence 47899999999999873 3579999999999998888888874 3467999999999999999999983 355778
Q ss_pred cceEEEEEEecCC--CCCc-----cccceEEEecCceEEEEEeCCCCeEEEEEEEcCCCC--CCCCCcchHHHHHHHhhC
Q 010723 97 SGYTCYTGIADFV--PADI-----ESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAG--GVDGPEGKKERLLKIFEG 167 (502)
Q Consensus 97 ~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~ 167 (502)
.+..+|++.+... +... +......|++++..++.+|+.++...+++....+.. .........+.+.+.+..
T Consensus 181 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 260 (400)
T PRK06475 181 SGHIAWRTTLAADALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFFNFVAITGGENPGEVWSKTGDKAHLKSIYAD 260 (400)
T ss_pred CCceEEEEEeehhhcchhhhhhcccCCceEEEEcCCCEEEEEEccCCcEEEEEEEEcCCCCcccCCCCCCHHHHHHHhcC
Confidence 8888888765321 1111 112234566788888889998776544433222111 111122346788889999
Q ss_pred CChHHHHHHHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCC
Q 010723 168 WCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKT 247 (502)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~ 247 (502)
|.+.+..++..... +..++++.......|..|||+|||||||+|+|++|||+|+||+||..|+++|..
T Consensus 261 ~~~~~~~~i~~~~~--~~~~~l~~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~---------- 328 (400)
T PRK06475 261 WNKPVLQILAAIDE--WTYWPLFEMADAQFVGPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEALDS---------- 328 (400)
T ss_pred CChHHHHHHhcCCc--eeECcCcccCCCcceecCCEEEEecccccCCchhhhhHHHHHHHHHHHHHHHhc----------
Confidence 99998888876653 345666664444455789999999999999999999999999999999999963
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCC
Q 010723 248 PIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHP 305 (502)
Q Consensus 248 ~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~ 305 (502)
.+...+|+.|++.|+++++.++..+++.. .+.....+....|+..+...
T Consensus 329 -~~~~~aL~~Ye~~R~~r~~~~~~~s~~~~--------~~~~~~~~~~~~r~~~~~~~ 377 (400)
T PRK06475 329 -DDQSAGLKRFDSVRKERIAAVAKRGQLNR--------FAYHATGIFALGRNMLFAIR 377 (400)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhCCCCHHHHHHHHHHhhc
Confidence 13568999999999999999888775422 12223355666777766433
No 7
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=100.00 E-value=1e-31 Score=276.16 Aligned_cols=249 Identities=26% Similarity=0.416 Sum_probs=192.9
Q ss_pred EEeeHHHHHHHHHhccCCCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhhccccC-----CCCCccc
Q 010723 23 RVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFG-----PQEAIYS 97 (502)
Q Consensus 23 ~~i~R~~L~~~L~~~~~~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~-----~~~~~~~ 97 (502)
..++|..|.+.|.+.++...++++++|++++.+++++++++++|++++||+||||||++|.||+.+++ ...+.|.
T Consensus 100 ~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vR~~l~~~~~~~~~~p~~~ 179 (414)
T TIGR03219 100 SSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSALRDYVLQGQGQAPVRPRFS 179 (414)
T ss_pred ccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHHHHHHhcCccCCCCCCcccc
Confidence 36899999999999987767899999999999888999999999999999999999999999999853 2346788
Q ss_pred ceEEEEEEecCCC--CC-----cc---ccceEEEecCceEEEEEeCCCCeE-EEEEEEcCCCC--------CCCCCcchH
Q 010723 98 GYTCYTGIADFVP--AD-----IE---SVGYRVFLGHKQYFVSSDVGAGKM-QWYAFHKEPAG--------GVDGPEGKK 158 (502)
Q Consensus 98 ~~~~~~~~~~~~~--~~-----~~---~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~--------~~~~~~~~~ 158 (502)
++.+|++++.... .. .+ ......+.+.+.+++.+|+.++.. +|+.+...+.. .........
T Consensus 180 g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (414)
T TIGR03219 180 GTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYLGLDGHILTFPVRQGRLINVVAFISDRSQPKPTWPSDTPWVREATQ 259 (414)
T ss_pred CcEEEEEEeeHHHHhhhhccccccccccccceEEEcCCCeEEEEECCCCcEEEEEEEEcCcccccCCCCCCCcccCccCH
Confidence 8888888753211 00 00 012245667777888889988774 44444432211 111123456
Q ss_pred HHHHHHhhCCChHHHHHHHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHh
Q 010723 159 ERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKA 238 (502)
Q Consensus 159 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~ 238 (502)
+.+++.|..|.+.+.+++...... ..+.++...+.++|++|||+|+|||||+|+|+.|||+|+||+||..|+++|...
T Consensus 260 ~~l~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~w~~grv~LiGDAAH~m~P~~GqGa~~AieDA~~La~~L~~~ 337 (414)
T TIGR03219 260 REMLDAFAGWGDAARALLECIPAP--TLWALHDLAELPGYVHGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLARLLGDT 337 (414)
T ss_pred HHHHHHhcCCCHHHHHHHHhCCCC--CceeeeecccccceeeCcEEEEEcccCCCCCCcCcchHhHHHHHHHHHHHHHhh
Confidence 778889999999998888766543 335566656678999999999999999999999999999999999999999875
Q ss_pred hhcCCCCCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 010723 239 CKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVM 279 (502)
Q Consensus 239 ~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~ 279 (502)
..+ ..+++.+|+.|+++|++++..+++.|+....+
T Consensus 338 ~~~------~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~ 372 (414)
T TIGR03219 338 ELE------AGDLPALLEAYDDVRRPRACRVQRTSREAGEL 372 (414)
T ss_pred ccC------cchHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 322 24678999999999999999999999876644
No 8
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=100.00 E-value=7.7e-32 Score=278.28 Aligned_cols=278 Identities=22% Similarity=0.264 Sum_probs=188.5
Q ss_pred CCeEEEeeHHHHHHHHHhccC-----CCeEecCCeEEEEEe-------eCCeEEEEEccCcEEEeeEEEEecCCCchhhc
Q 010723 19 LPVTRVISRMTLQQILAKAVG-----DEIILNESNVIDFKD-------HGDKVSVVLENGQCYAGDLLIGADGIWSKVRK 86 (502)
Q Consensus 19 ~p~~~~i~R~~L~~~L~~~~~-----~~~v~~~~~v~~i~~-------~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~ 86 (502)
.+++++++|..|++.|.+++. ++.++++++|++++. ++++++|++.+|++++||+||||||++|.||+
T Consensus 108 ~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~ 187 (437)
T TIGR01989 108 EDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVRK 187 (437)
T ss_pred CceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhHH
Confidence 467999999999999998763 357999999999975 24679999999999999999999999999999
Q ss_pred cc-cCCCCCcccceEEEEEEecCCCCCccccceEEEecCceEEEEEeCCCCeEEEEEEEcCCCC--CCC-CCcchHHHHH
Q 010723 87 NL-FGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAG--GVD-GPEGKKERLL 162 (502)
Q Consensus 87 ~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~l~ 162 (502)
.+ +......|.+.. +.+.+.....+.....++.|...+ .+.+.|++++...|++....... ... ..+...+.+.
T Consensus 188 ~~gi~~~g~~y~q~~-~v~~v~~~~~~~~~~~~~~f~~~g-~~~~lPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 265 (437)
T TIGR01989 188 AANIDTTGWNYNQHA-VVATLKLEEATENDVAWQRFLPTG-PIALLPLPDNNSTLVWSTSPEEALRLLSLPPEDFVDALN 265 (437)
T ss_pred HcCCCccceeeccEE-EEEEEEcccCCCCCeEEEEECCCC-CEEEeECCCCCEEEEEeCCHHHHHHHHcCCHHHHHHHHH
Confidence 98 556667788743 333333221223344566666554 45556887776666554321100 000 0112222232
Q ss_pred HHhh----CCCh------HHHHH--------------------HHcCCccceeeeecccCCCCCcccCCCEEEEcCCccc
Q 010723 163 KIFE----GWCD------NVVDL--------------------ILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHA 212 (502)
Q Consensus 163 ~~~~----~~~~------~~~~~--------------------~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~ 212 (502)
+.+. .+.. .+.++ +..........+++ ....+.+|..+||+|+|||||.
T Consensus 266 ~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~rv~l~GDAAH~ 344 (437)
T TIGR01989 266 AAFDLGYSDHPYSYLLDYAMEKLNEDIGFRTEGSKSCFQVPPRVIGVVDKSRAAFPL-GLGHADEYVTKRVALVGDAAHR 344 (437)
T ss_pred HHhcccccccccccccccccccccccccccccccccccccCchhheeecccceeEEe-cccchhhccCCCEEEEchhhcC
Confidence 2230 0000 00000 00000001122333 2345678999999999999999
Q ss_pred cCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCC
Q 010723 213 MQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLG 292 (502)
Q Consensus 213 ~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 292 (502)
++|++|||+|+||+||.+|+++|.++++.+ .+.....+|++|+++|++++..++.++.. +..+|.+..+
T Consensus 345 ~~P~~GqG~n~~l~Da~~La~~L~~~~~~~----~~~~~~~~L~~Y~~~R~~~~~~v~~~t~~-------l~~l~~~~~~ 413 (437)
T TIGR01989 345 VHPLAGQGVNLGFGDVASLVKALAEAVSVG----ADIGSISSLKPYERERYAKNVVLLGLVDK-------LHKLYATDFP 413 (437)
T ss_pred CCCChhhhHHHHHHHHHHHHHHHHHHHhcC----CChhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHcCCcc
Confidence 999999999999999999999999887543 12233579999999999999987766664 3456778888
Q ss_pred ccchhhhcccCCCCcccc
Q 010723 293 PLSFLTKFRIPHPGRVGG 310 (502)
Q Consensus 293 ~~~~~r~~~l~~~~~~~~ 310 (502)
++..+|+.+|.+++.++.
T Consensus 414 ~~~~~R~~~l~~~~~~~~ 431 (437)
T TIGR01989 414 PVVALRTFGLNLTNYIGP 431 (437)
T ss_pred HHHHHHHHHHHHhhhCHH
Confidence 899999999988877663
No 9
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=7.3e-32 Score=274.20 Aligned_cols=268 Identities=25% Similarity=0.285 Sum_probs=182.7
Q ss_pred CCeEEEeeHHHHHHHHHhccC---CCeEecCCeEEEEEeeCCeEEEEEc-cCcEEEeeEEEEecCCCchhhcccc-CCCC
Q 010723 19 LPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLE-NGQCYAGDLLIGADGIWSKVRKNLF-GPQE 93 (502)
Q Consensus 19 ~p~~~~i~R~~L~~~L~~~~~---~~~v~~~~~v~~i~~~~~~v~v~~~-dg~~~~adlvVgADG~~S~vR~~l~-~~~~ 93 (502)
.+++++++|..|.+.|.+++. +++++++++|+.++++++.++++++ ||++++|||||||||.||.||+.+. ....
T Consensus 95 ~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~vR~~~~~~~~~ 174 (387)
T COG0654 95 GALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSAVRRAAGIAEFS 174 (387)
T ss_pred CcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCchHHHHhcCCCCcc
Confidence 678999999999999999874 3689999999999999999999999 9999999999999999999999995 3333
Q ss_pred C-cccceEEEEEEecCCCCCccccceEEEecCceEEEEEeCCCCe--EEEEEEEcCCCCCCCCCcchHHHHHH-HhhCCC
Q 010723 94 A-IYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGK--MQWYAFHKEPAGGVDGPEGKKERLLK-IFEGWC 169 (502)
Q Consensus 94 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~ 169 (502)
. .|.+ .++...+.. +.+.....+..|. +.+.+.++|.++.. ..|+......... .....+.+.. ....+.
T Consensus 175 ~~~y~~-~~l~~~~~~-~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~ 248 (387)
T COG0654 175 GRDYGQ-TALVANVEP-EEPHEGRAGERFT-HAGPFALLPLPDNRSSVVWSLPPGPAEDL---QGLSDEEFLRELQRRLG 248 (387)
T ss_pred CCCCCc-eEEEEEeec-CCCCCCeEEEEec-CCCceEEEecCCCceeEEEECChhhHHHH---hcCCHHHHHHHHHHhcC
Confidence 3 5655 333333221 1233334444444 44455666776433 3443322111110 1111222222 122221
Q ss_pred hHHHHHHHcCC-ccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCCh
Q 010723 170 DNVVDLILATD-EEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTP 248 (502)
Q Consensus 170 ~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~ 248 (502)
.... +.... ......+++. ...+.+|.++||+|+|||||+|+|++|||+|+||+||.+|+++|.++...+
T Consensus 249 ~~~~--~~~~~~~~~~~~~pl~-~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~~------ 319 (387)
T COG0654 249 ERDP--LGRVTLVSSRSAFPLS-LRVAERYRRGRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRPG------ 319 (387)
T ss_pred cccc--cceEEEcccccccccc-chhhhheecCcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhcC------
Confidence 1100 11111 1111122222 234568999999999999999999999999999999999999999986632
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCccc
Q 010723 249 IDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVG 309 (502)
Q Consensus 249 ~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~ 309 (502)
.+ ..+|+.|+++|++++..++.++.. +...|....++...+|+.+|......+
T Consensus 320 ~~-~~~L~~Y~~~R~~~~~~~~~~s~~-------~~~~~~~~~~~~~~~r~~~l~~~~~~~ 372 (387)
T COG0654 320 AD-AAALAAYEARRRPRAEAIQKLSRA-------LGRLFSADGPFARFLRNLGLRLLDRLP 372 (387)
T ss_pred cc-HHHHHHHHHhhhhHHHHHHHHHHH-------HhhhhccCCcHHHHHHHHHHHhhccCc
Confidence 22 799999999999999988777763 345677788888999999988776554
No 10
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=2.1e-32 Score=280.60 Aligned_cols=279 Identities=18% Similarity=0.225 Sum_probs=189.6
Q ss_pred eEEEeeHHHHHHHHHhccCC--CeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhhcccc-CCCCCccc
Q 010723 21 VTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLF-GPQEAIYS 97 (502)
Q Consensus 21 ~~~~i~R~~L~~~L~~~~~~--~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~-~~~~~~~~ 97 (502)
++++++|..|.+.|.+++.. +.++++++++++++++++++|++++|++++||+||||||++|.||+.+. ......|.
T Consensus 105 ~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~vR~~lg~~~~~~~~~ 184 (405)
T PRK05714 105 LGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSAVRRLAGCATREWDYL 184 (405)
T ss_pred cEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCchhHHhcCCCcccccCC
Confidence 58999999999999987743 6788999999999998899999999999999999999999999999983 33344555
Q ss_pred ceEEEEEEecCCCCCccccceEEEecCceEEEEEeCCCCe-EEE---EEEEcCCC--CCC-CCCcchHHHHHHHhhCCCh
Q 010723 98 GYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGK-MQW---YAFHKEPA--GGV-DGPEGKKERLLKIFEGWCD 170 (502)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~---~~~~~~~~--~~~-~~~~~~~~~l~~~~~~~~~ 170 (502)
+...+. .+.. +.+.....+..+ .+.+.++++|++++. ..| ++...... ... ...+...+++.+.|. +
T Consensus 185 ~~~~~~-~~~~-~~~~~~~~~~~~-~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~ 258 (405)
T PRK05714 185 HHAIVT-SVRC-SEPHRATAWQRF-TDDGPLAFLPLERDGDEHWCSIVWSTTPEEAERLMALDDDAFCAALERAFE---G 258 (405)
T ss_pred ceEEEE-EEEc-CCCCCCEEEEEc-CCCCCeEEeeCCCCCCCCeEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHH---H
Confidence 433322 2221 222222334443 444566677875432 122 22111100 000 000111222222222 2
Q ss_pred HHHHHHHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCChhh
Q 010723 171 NVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPID 250 (502)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~ 250 (502)
.+.+++... ....+++... .+++|+++||+|+|||||+|+|++|||+|+||+||.+|+++|..+...+ .+..
T Consensus 259 ~~~~~~~~~---~~~~~~l~~~-~~~~~~~~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~g----~~~~ 330 (405)
T PRK05714 259 RLGEVLSAD---PRLCVPLRQR-HAKRYVEPGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERG----ERLA 330 (405)
T ss_pred HhCCceecC---CccEEeccee-ehhhhccCCEEEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhcC----CCcc
Confidence 222222111 1233455553 5689999999999999999999999999999999999999998765321 1123
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCccc--ceeeeeccchh
Q 010723 251 IVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVG--GRFFIDLAMPL 320 (502)
Q Consensus 251 ~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~--~~~~~~~~~~~ 320 (502)
...+|+.|+++|++++..++..++. +..+|.+..+++..+|+.+|..++..+ +++++++++|.
T Consensus 331 ~~~~L~~Ye~~R~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g~ 395 (405)
T PRK05714 331 DVRVLSRFERRRMPHNLALMAAMEG-------FERLFQADPLPLRWLRNTGLKLVDQMPEAKALFVRQALGL 395 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHCCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHhcC
Confidence 3589999999999999988777765 334567777889999999999998877 48888888764
No 11
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=3.3e-32 Score=276.83 Aligned_cols=272 Identities=18% Similarity=0.202 Sum_probs=184.8
Q ss_pred eEEEeeHHHHHHHHHhccC---CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhhccc-cCCCCCcc
Q 010723 21 VTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL-FGPQEAIY 96 (502)
Q Consensus 21 ~~~~i~R~~L~~~L~~~~~---~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l-~~~~~~~~ 96 (502)
+++++.|..|..+|.+++. ++.++++++|++++.+++++++++++|++++||+||||||.+|.||+.+ ++.....|
T Consensus 103 ~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~vR~~~gi~~~~~~~ 182 (384)
T PRK08849 103 LGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQVRQLAGIGITAWDY 182 (384)
T ss_pred cEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCchhHHhcCCCceeccC
Confidence 5799999999999988763 4679999999999999999999999999999999999999999999998 45556667
Q ss_pred cceEEEEEEecCCCCCccccceEEEecCceEEEEEeCCCCeEEEEEEEcCCC--CC-CCCCcchHHHHHHHhhCCChHHH
Q 010723 97 SGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPA--GG-VDGPEGKKERLLKIFEGWCDNVV 173 (502)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~l~~~~~~~~~~~~ 173 (502)
.+......+ .. ..+.....+..|...+.... .|+.++...++++..... .. ...++...+.+.+.|..+ +.
T Consensus 183 ~~~~~v~~~-~~-~~~~~~~~~~~~~~~g~~~~-~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~ 256 (384)
T PRK08849 183 RQHCMLINV-ET-EQPQQDITWQQFTPSGPRSF-LPLCGNQGSLVWYDSPKRIKQLSAMNPEQLRSEILRHFPAE---LG 256 (384)
T ss_pred CCeEEEEEE-Ec-CCCCCCEEEEEeCCCCCEEE-eEcCCCceEEEEECCHHHHHHHHcCCHHHHHHHHHHHhhhh---hC
Confidence 664333222 11 11222334455544444333 466544332222221100 00 001112222333333221 11
Q ss_pred HHHHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHHH
Q 010723 174 DLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVS 253 (502)
Q Consensus 174 ~~~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~ 253 (502)
. ........+++. ...+.+|++|||+|+|||||+|+|++|||+|+||+||.+|+++|... ..+.++
T Consensus 257 ~----~~~~~~~~~~l~-~~~~~~~~~grv~LlGDAAH~~~P~~GQG~n~al~Da~~L~~~l~~~---------~~~~~~ 322 (384)
T PRK08849 257 E----IKVLQHGSFPLT-RRHAQQYVKNNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEKQ---------GVLNDA 322 (384)
T ss_pred c----EEeccceEeecc-ccccchhccCCEEEEEcccccCCCCccchHhHHHHHHHHHHHHHHhc---------CCCcHH
Confidence 1 111111222322 24567999999999999999999999999999999999999998642 124578
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCcccc--eeeeeccch
Q 010723 254 ALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGG--RFFIDLAMP 319 (502)
Q Consensus 254 ~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~--~~~~~~~~~ 319 (502)
+|+.|+++|++++..++..+.. +..+|++...++..+|+.+|..++++++ +.+++++||
T Consensus 323 ~L~~Ye~~R~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g 383 (384)
T PRK08849 323 SFARYERRRRPDNLLMQTGMDL-------FYKTFSNSLTPLKFVRNAALKLAENSGPLKTQVLKYALG 383 (384)
T ss_pred HHHHHHHHHhHHHHHHHHHHHH-------HHHHhcCCchHHHHHHHHHHHHHhccHHHHHHHHHHHcC
Confidence 9999999999999876554443 3446777778889999999999999884 778887765
No 12
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=100.00 E-value=4.9e-32 Score=277.62 Aligned_cols=279 Identities=17% Similarity=0.188 Sum_probs=189.0
Q ss_pred CeEEEeeHHHHHHHHHhccC---CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhhcccc-CCCCCc
Q 010723 20 PVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLF-GPQEAI 95 (502)
Q Consensus 20 p~~~~i~R~~L~~~L~~~~~---~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~-~~~~~~ 95 (502)
++++.++|..|++.|.+++. ++.++++++|++++++++.++|++++|++++||+||||||++|.||+.+. +.....
T Consensus 103 ~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~vR~~~~~~~~~~~ 182 (405)
T PRK08850 103 DLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSWLRRQMDIPLTHWD 182 (405)
T ss_pred ccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCChhHHHcCCCeeEEe
Confidence 46899999999999998763 36789999999999988899999999999999999999999999999983 444455
Q ss_pred ccceEEEEEEecCCCCCccccceEEEecCceEEEEEeCCCC-eEEEEEEEcCCCCC--CCCC-cchHHHHHHHhhCCChH
Q 010723 96 YSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAG-KMQWYAFHKEPAGG--VDGP-EGKKERLLKIFEGWCDN 171 (502)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~--~~~~-~~~~~~l~~~~~~~~~~ 171 (502)
|.+ .++.+.+.. +.......+++| ++++.+.++|+.++ ...|++..+..... ...+ +...+.+.+.+.. .
T Consensus 183 ~~~-~~~~~~v~~-~~~~~~~~~~~~-~~~g~~~~lp~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~ 256 (405)
T PRK08850 183 YGH-SALVANVRT-VDPHNSVARQIF-TPQGPLAFLPMSEPNMSSIVWSTEPLRAEALLAMSDEQFNKALTAEFDN---R 256 (405)
T ss_pred ecc-EEEEEEEEc-cCCCCCEEEEEE-cCCCceEEEECCCCCeEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhh---h
Confidence 644 555555432 222222333444 45555666687654 34444433211000 0000 1111222222211 1
Q ss_pred HHHHHHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCChhhH
Q 010723 172 VVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDI 251 (502)
Q Consensus 172 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~ 251 (502)
+.. +.... ....+++.. ....+|+++||+|+|||||+|+|++|||+|+||+||.+|+++|..+...+ .+...
T Consensus 257 ~~~-~~~~~--~~~~~pl~~-~~~~~~~~~rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~----~~~~~ 328 (405)
T PRK08850 257 LGL-CEVVG--ERQAFPLKM-RYARDFVRERVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQG----RDIGL 328 (405)
T ss_pred hCc-EEEcc--cccEEecce-eeccccccCcEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhcC----CCcch
Confidence 100 00000 111233332 34578999999999999999999999999999999999999999876432 12235
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCcccc--eeeeeccch
Q 010723 252 VSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGG--RFFIDLAMP 319 (502)
Q Consensus 252 ~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~--~~~~~~~~~ 319 (502)
..+|+.|+++|++++..++..+.. +..+|....+++..+|+.+|..++.++. +++++++++
T Consensus 329 ~~~L~~Y~~~R~~~~~~~~~~~~~-------l~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g 391 (405)
T PRK08850 329 KRNLRGYERWRKAEAAKMIAAMQG-------FRDLFSGSNPAKKLVRGIGMSLAGQLPGAKDEIMKRALG 391 (405)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHCCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHhC
Confidence 689999999999999988776654 3345667777788999999998888774 556666554
No 13
>PRK07236 hypothetical protein; Provisional
Probab=99.98 E-value=2.1e-30 Score=263.90 Aligned_cols=244 Identities=26% Similarity=0.338 Sum_probs=181.8
Q ss_pred EeeHHHHHHHHHhccCCCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhhccccCCCCCcccceEEEE
Q 010723 24 VISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYT 103 (502)
Q Consensus 24 ~i~R~~L~~~L~~~~~~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~ 103 (502)
.+.+..|.+.|.+.++...++++++|++++++++++++++++|++++||+||||||++|.||+.+++...+.|.++.+|.
T Consensus 96 ~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~vR~~l~~~~~~~~~g~~~~~ 175 (386)
T PRK07236 96 QTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTVRAQLLPDVRPTYAGYVAWR 175 (386)
T ss_pred ccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchHHHHhCCCCCCCcCCeEEEE
Confidence 35788999999998877779999999999998889999999999999999999999999999999776678899988888
Q ss_pred EEecCCCCCcc-----ccceEEEecCceEEEEEeCCC---------CeEEEEEEEcCCCC-C------------C-----
Q 010723 104 GIADFVPADIE-----SVGYRVFLGHKQYFVSSDVGA---------GKMQWYAFHKEPAG-G------------V----- 151 (502)
Q Consensus 104 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~---------~~~~~~~~~~~~~~-~------------~----- 151 (502)
+++.....+.. ...+.++.+++..++.+|+++ ...+|+++...+.. . +
T Consensus 176 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (386)
T PRK07236 176 GLVDEAALPPEARAALRDRFTFQLGPGSHILGYPVPGEDGSTEPGKRRYNWVWYRNAPAGEELDELLTDRDGTRRPFSVP 255 (386)
T ss_pred EecchHHcCchhhhhcccceEEEEcCCceEEEEECCCCCCCcCCCCcEEEEEEEecCCCccchhhhcccCCCccccCCCC
Confidence 77543111110 123445566776777777653 22455554433210 0 0
Q ss_pred --CCCcchHHHHHHHhhC-CChHHHHHHHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHH
Q 010723 152 --DGPEGKKERLLKIFEG-WCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDG 228 (502)
Q Consensus 152 --~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da 228 (502)
.......+.+.+.+.. |.+.+.+++...... ..++++.. ..++|..|||+|+|||||+|+|+.|||+|+||+||
T Consensus 256 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~grv~LiGDAAH~~~P~~GqG~n~aieDA 332 (386)
T PRK07236 256 PGALRDDVLAELRDDAAELLAPVFAELVEATAQP--FVQAIFDL-EVPRMAFGRVALLGDAAFVARPHTAAGVAKAAADA 332 (386)
T ss_pred ccccCHHHHHHHHHHHHHhcCHHHHHHHhhCcCc--hhhhhhcc-cCcccccCcEEEEecccccCCCcchhhHHHHHHHH
Confidence 0012233455555555 778888887765432 22345443 34689999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 010723 229 YQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVM 279 (502)
Q Consensus 229 ~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~ 279 (502)
..|+++|.... .+...+|+.|+++|++++..++..++..+..
T Consensus 333 ~~La~~L~~~~---------~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~ 374 (386)
T PRK07236 333 VALAEALAAAA---------GDIDAALAAWEAERLAVGAAIVARGRRLGAR 374 (386)
T ss_pred HHHHHHHHhcc---------cchHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999997641 2367999999999999999999998876544
No 14
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.98 E-value=1.2e-30 Score=276.18 Aligned_cols=277 Identities=19% Similarity=0.269 Sum_probs=188.0
Q ss_pred cCCCeEEEeeHHHHHHHHHhccC---CCeEecCCeEEEEEeeCCeEEEEEc--cC--cEEEeeEEEEecCCCchhhccc-
Q 010723 17 KGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLE--NG--QCYAGDLLIGADGIWSKVRKNL- 88 (502)
Q Consensus 17 ~~~p~~~~i~R~~L~~~L~~~~~---~~~v~~~~~v~~i~~~~~~v~v~~~--dg--~~~~adlvVgADG~~S~vR~~l- 88 (502)
.+++..+.++|..|++.|.+.+. .+.++++++|+++++++++|+++++ +| ++++||+||||||++|+||+.+
T Consensus 102 ~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~lg 181 (538)
T PRK06183 102 FGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSFVRRTLG 181 (538)
T ss_pred CCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchhHHHHcC
Confidence 45666788999999999998763 4679999999999999999999887 46 4799999999999999999998
Q ss_pred cCCCCCcccceEEEEEEecCCCCCccccceEEEecCceEEEEEeCCCCeEEEEEEEcCCCCCCCCCcchHHHHHHHhhCC
Q 010723 89 FGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGW 168 (502)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 168 (502)
+......|........+ ..............++.++..++.+|.+++...|.+....... .. .....+.+.+.+..|
T Consensus 182 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~-~~-~~~~~~~~~~~l~~~ 258 (538)
T PRK06183 182 VPFEDLTFPERWLVVDV-LIANDPLGGPHTYQYCDPARPYTSVRLPHGRRRWEFMLLPGET-EE-QLASPENVWRLLAPW 258 (538)
T ss_pred CeeeCCCccceEEEEEE-ecccCccCCCceEEEECCCCCEEEEEcCCCeEEEEEEeCCCCC-hh-hcCCHHHHHHHHHhh
Confidence 33333344332221111 1111111111233455666677778888887777655432111 11 112345566666555
Q ss_pred ChHHHHHHHcCCccceeeeecccC--CCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCC
Q 010723 169 CDNVVDLILATDEEAILRRDIYDR--TPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESK 246 (502)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~ 246 (502)
... .....+.....+.. ..+.+|++|||+|+|||||.|+|++|||||+||+||.+|+|+|..++++
T Consensus 259 ~~~-------~~~~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~g----- 326 (538)
T PRK06183 259 GPT-------PDDAELIRHAVYTFHARVADRWRSGRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRG----- 326 (538)
T ss_pred CCC-------CcceEEEEEEeeeEccEEhhhhccCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHcC-----
Confidence 210 01111222222222 3357899999999999999999999999999999999999999987654
Q ss_pred ChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCcccc--eeeeecc
Q 010723 247 TPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGG--RFFIDLA 317 (502)
Q Consensus 247 ~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~--~~~~~~~ 317 (502)
...+.+|++|+++|++++..++..+..+.. ++....+....+|+..|..+...+. ++++...
T Consensus 327 --~~~~~~L~~Ye~eR~p~~~~~~~~s~~~~~-------~~~~~~~~~~~~R~~~l~~~~~~~~~~~~~~~~~ 390 (538)
T PRK06183 327 --RAGDALLDTYEQERRPHARAMIDLAVRLGR-------VICPTDRLAAALRDAVLRALNYLPPLKRYVLEMR 390 (538)
T ss_pred --CCcHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hccCCCHHHHHHHHHHHHhhhcCcchhhhhhhcc
Confidence 234789999999999999999888876443 3444556667889888777666553 4444433
No 15
>PRK07538 hypothetical protein; Provisional
Probab=99.97 E-value=3.3e-30 Score=264.73 Aligned_cols=243 Identities=31% Similarity=0.405 Sum_probs=180.1
Q ss_pred EEEeeHHHHHHHHHhccC----CCeEecCCeEEEEEeeCCeEEEEEccC-----cEEEeeEEEEecCCCchhhccccCCC
Q 010723 22 TRVISRMTLQQILAKAVG----DEIILNESNVIDFKDHGDKVSVVLENG-----QCYAGDLLIGADGIWSKVRKNLFGPQ 92 (502)
Q Consensus 22 ~~~i~R~~L~~~L~~~~~----~~~v~~~~~v~~i~~~~~~v~v~~~dg-----~~~~adlvVgADG~~S~vR~~l~~~~ 92 (502)
.+.++|..|++.|.+++. ...++++++|++++++++++.+.+.++ ++++||+||||||++|.||+++.+..
T Consensus 96 ~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l~~~~ 175 (413)
T PRK07538 96 QYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQLYPDE 175 (413)
T ss_pred eEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCHHHhhhhcCCC
Confidence 467999999999998752 246999999999998888777777654 48999999999999999999995443
Q ss_pred -CCcccceEEEEEEecCCCCCccccceEEEecCceEEEEEeCCCC-------eEEEEEEEcCCCC---C--CCCCcchHH
Q 010723 93 -EAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAG-------KMQWYAFHKEPAG---G--VDGPEGKKE 159 (502)
Q Consensus 93 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-------~~~~~~~~~~~~~---~--~~~~~~~~~ 159 (502)
.+.|.+..+|++.....+. .....+.++...+..++++|+.+. .++|++....+.. . ........+
T Consensus 176 ~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~p~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 254 (413)
T PRK07538 176 GPPRWNGVMMWRGVTEAPPF-LTGRSMVMAGHLDGKLVVYPISEPVDADGRQLINWVAEVRVDDAGAPRREDWNRPGDLE 254 (413)
T ss_pred CCCcccceEEEEEeecCccc-cCCCcEEEEcCCCCEEEEEECCCCcccCCceEEEEEEEEcCCccCCCcccccCCccCHH
Confidence 6778888888876543211 111122222223456777787653 5678776654321 0 111234567
Q ss_pred HHHHHhhCCChH---HHHHHHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHH
Q 010723 160 RLLKIFEGWCDN---VVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELE 236 (502)
Q Consensus 160 ~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~ 236 (502)
++++.|..|.+. +.+++.... .+..+++....+.++|+.|||+|||||||+|+|++|||+|+||+||..|+++|.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~p~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~ 332 (413)
T PRK07538 255 DFLPHFADWRFDWLDVPALIRAAE--AIYEYPMVDRDPLPRWTRGRVTLLGDAAHPMYPVGSNGASQAILDARALADALA 332 (413)
T ss_pred HHHHHhcCCCCCcccHHHHHhcCc--ceeeccccccCCCCcccCCcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHH
Confidence 788888887653 445554333 345567777677789999999999999999999999999999999999999998
Q ss_pred HhhhcCCCCCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 010723 237 KACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAA 277 (502)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~ 277 (502)
+. .+.+++|+.|+++|++++..++..++..+
T Consensus 333 ~~----------~~~~~aL~~Ye~~R~~~~~~~~~~s~~~~ 363 (413)
T PRK07538 333 AH----------GDPEAALAAYEAERRPATAQIVLANRLNG 363 (413)
T ss_pred hc----------CCHHHHHHHHHHHhhHHHHHHHHHhhhcC
Confidence 63 23688999999999999999988887633
No 16
>PRK05868 hypothetical protein; Validated
Probab=99.97 E-value=2.2e-30 Score=261.75 Aligned_cols=240 Identities=25% Similarity=0.311 Sum_probs=165.4
Q ss_pred EEEeeHHHHHHHHHhccC-CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhhccccCCCCCcccceE
Q 010723 22 TRVISRMTLQQILAKAVG-DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYT 100 (502)
Q Consensus 22 ~~~i~R~~L~~~L~~~~~-~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~ 100 (502)
.+.++|.+|.+.|.+.+. .+.++++++|+++++++++|+|+++||++++||+||||||++|.||+.+++........+.
T Consensus 99 ~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~vR~~~~~~~~~~~~~~g 178 (372)
T PRK05868 99 DIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSNVRRLVFGPEEQFVKRLG 178 (372)
T ss_pred eEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCchHHHHhcCCcccceeecc
Confidence 468999999999988664 3679999999999988899999999999999999999999999999998554332222111
Q ss_pred EEEEEecCCCCCccccceEE-EecCceEEEEEeCCCCeE-EEEE-EEcCC-CCCCCCCcchHHHHHHHhh--CCC-hHHH
Q 010723 101 CYTGIADFVPADIESVGYRV-FLGHKQYFVSSDVGAGKM-QWYA-FHKEP-AGGVDGPEGKKERLLKIFE--GWC-DNVV 173 (502)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~-~~~~-~~~~~-~~~~~~~~~~~~~l~~~~~--~~~-~~~~ 173 (502)
.+..... .+.......+.. +.+++.+++.+|..++.. ..++ +.... ...........+.+.+.|. +|. +.+.
T Consensus 179 ~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~w~~~~l~ 257 (372)
T PRK05868 179 THAAIFT-VPNFLELDYWQTWHYGDSTMAGVYSARNNTEARAALAFMDTELRIDYRDTEAQFAELQRRMAEDGWVRAQLL 257 (372)
T ss_pred eEEEEEE-cCCCCCCCcceEEEecCCcEEEEEecCCCCceEEEEEEecCCcccccCChHHHHHHHHHHHhhCCCchHHHH
Confidence 2222221 122122222333 457777788888876543 2222 22211 1111112345677888887 565 4444
Q ss_pred HHHHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHHH
Q 010723 174 DLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVS 253 (502)
Q Consensus 174 ~~~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~ 253 (502)
+.+...+. + .++.....++++|++|||+|+|||||+|+|+.|||+|+||+||+.|+++|... ..++++
T Consensus 258 ~~~~~~~~--~-~~~~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqGa~~AleDa~~La~~L~~~---------~~~~~~ 325 (372)
T PRK05868 258 HYMRSAPD--F-YFDEMSQILMDRWSRGRVALVGDAGYCCSPLSGQGTSVALLGAYILAGELKAA---------GDDYQL 325 (372)
T ss_pred hhcccCCc--e-eeccceEEecCCCCCCCeeeeecccccCCCccCccHHHHHHHHHHHHHHHHhc---------CCCHHH
Confidence 44432221 1 12212234567999999999999999999999999999999999999999763 135789
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 010723 254 ALKSYERARRLRVAVIHGLAR 274 (502)
Q Consensus 254 ~L~~Y~~~R~~~~~~~~~~s~ 274 (502)
+|+.||+.++|++.+.|.+..
T Consensus 326 al~~ye~~~~~~~~~~q~~~~ 346 (372)
T PRK05868 326 GFANYHAEFHGFVERNQWLVS 346 (372)
T ss_pred HHHHHHHHHhHHHHHhhhhhh
Confidence 999999999999987766554
No 17
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.97 E-value=1.8e-31 Score=272.54 Aligned_cols=280 Identities=18% Similarity=0.179 Sum_probs=189.8
Q ss_pred CeEEEeeHHHHHHHHHhccC---CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhhccc-cCCCCCc
Q 010723 20 PVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL-FGPQEAI 95 (502)
Q Consensus 20 p~~~~i~R~~L~~~L~~~~~---~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l-~~~~~~~ 95 (502)
..+|+++|..|++.|.+++. .+.++++++|++++.++++++|++++|++++||+||+|||.+|.||+.+ ++...+.
T Consensus 104 ~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vR~~~~~~~~~~~ 183 (391)
T PRK08020 104 ELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQVRQMAGIGVHGWQ 183 (391)
T ss_pred ccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCchhHHHcCCCccccC
Confidence 35899999999999998763 4678899999999988888999999999999999999999999999998 4555666
Q ss_pred ccceEEEEEEecCCCCCccccceEEEecCceEEEEEeCCCCeEEEEEEEcCCCCCCCCCcchHHHHHHHh-hCCChHHHH
Q 010723 96 YSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIF-EGWCDNVVD 174 (502)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~ 174 (502)
|.+. ++...+.. +.+.....+..+...+... ++|..++...++++.. +...........+++.+.+ ..|.+.+.+
T Consensus 184 y~~~-~~~~~~~~-~~~~~~~~~~~~~~~g~~~-~~p~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 259 (391)
T PRK08020 184 YRQS-CMLISVKC-ENPPGDSTWQQFTPSGPRA-FLPLFDNWASLVWYDS-PARIRQLQAMSMAQLQQEIAAHFPARLGA 259 (391)
T ss_pred CCce-EEEEEEEe-cCCCCCEEEEEEcCCCCEE-EeECCCCcEEEEEECC-HHHHHHHHCCCHHHHHHHHHHHhhhhccc
Confidence 7763 33333321 2222233444455554433 3466555443333221 1000000001122332222 122222211
Q ss_pred HHHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHH
Q 010723 175 LILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSA 254 (502)
Q Consensus 175 ~~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~ 254 (502)
. .......+++.. ..+++|+.+||+|+|||||+|+|++|||+|+||+||.+|+++|.+....+ .......+
T Consensus 260 ~----~~~~~~~~pl~~-~~~~~~~~~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~----~~~~~~~~ 330 (391)
T PRK08020 260 V----TPVAAGAFPLTR-RHALQYVQPGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNARSYG----EAWASEAV 330 (391)
T ss_pred e----EeccccEeecce-eehhhhccCcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHHHhcC----CCcccHHH
Confidence 1 111122334443 34678999999999999999999999999999999999999999875432 12235689
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCccc--ceeeeeccch
Q 010723 255 LKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVG--GRFFIDLAMP 319 (502)
Q Consensus 255 L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~--~~~~~~~~~~ 319 (502)
|+.|+++|+++...++ ..++. +..+|++..+++..+|+++|.+++.++ ++++++++||
T Consensus 331 L~~Y~~~R~~~~~~~~------~~~~~-l~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g 390 (391)
T PRK08020 331 LKRYQRRRMADNLLMQ------SGMDL-FYAGFSNNLPPLRFARNLGLMAAQRAGVLKRQALKYALG 390 (391)
T ss_pred HHHHHHHHHHHHHHHH------HHHHH-HHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHcC
Confidence 9999999999987543 33433 455788888999999999999999888 4888887775
No 18
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.97 E-value=2.2e-31 Score=271.79 Aligned_cols=279 Identities=17% Similarity=0.177 Sum_probs=193.0
Q ss_pred CeEEEeeHHHHHHHHHhccC--CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhhccc-cCCCCCcc
Q 010723 20 PVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL-FGPQEAIY 96 (502)
Q Consensus 20 p~~~~i~R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l-~~~~~~~~ 96 (502)
++++.++|..|.+.|.+++. .++++++++|++++.+++++++++++|++++||+||+|||.+|.+|+.+ ++.....|
T Consensus 105 ~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~vr~~~g~~~~~~~~ 184 (392)
T PRK08773 105 QLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAASTLRELAGLPVSRHDY 184 (392)
T ss_pred cCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCchHHHhhcCCceEEEe
Confidence 46899999999999998874 3678999999999998889999999999999999999999999999987 33333445
Q ss_pred cceEEEEEEecCCCCCccccceEEEecCceEEEEEeCCCCeEEEEEEEcCCCCC--C-CCCcchHHHHHHHhhCCChHHH
Q 010723 97 SGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGG--V-DGPEGKKERLLKIFEGWCDNVV 173 (502)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~~~~~~ 173 (502)
.+. ++...+.. ..+.....++.|..+ +.+.++|.+++...|++..+..... . .......+++.+.|..+...+.
T Consensus 185 ~~~-~~~~~v~~-~~~~~~~~~~~~~~~-g~~~~lP~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 261 (392)
T PRK08773 185 AQR-GVVAFVDT-EHPHQATAWQRFLPT-GPLALLPFADGRSSIVWTLPDAEAERVLALDEAAFSRELTQAFAARLGEVR 261 (392)
T ss_pred ccE-EEEEEEEc-cCCCCCEEEEEeCCC-CcEEEEECCCCceEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhhcCeE
Confidence 442 22222221 112222334444444 4456678877766555543221000 0 0011222334444433322111
Q ss_pred HHHHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHHH
Q 010723 174 DLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVS 253 (502)
Q Consensus 174 ~~~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~ 253 (502)
... ....+++.. ..+.+|+.+||+|+|||||+|+|++|||+|+||+||..|+++|.+++..+ .+.....
T Consensus 262 ----~~~--~~~~~~l~~-~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~----~~~~~~~ 330 (392)
T PRK08773 262 ----VAS--PRTAFPLRR-QLVQQYVSGRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARR----ADWAAPH 330 (392)
T ss_pred ----ecC--CccEeechh-hhhhhhcCCcEEEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhcC----CCcccHH
Confidence 111 112234443 35679999999999999999999999999999999999999999876542 1123468
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCcccc--eeeeeccch
Q 010723 254 ALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGG--RFFIDLAMP 319 (502)
Q Consensus 254 ~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~--~~~~~~~~~ 319 (502)
+|++|+++|++++.. +...++ .+.++|+++.+++..+|+.+|.++++++. +++++++||
T Consensus 331 ~l~~y~~~R~~~~~~------~~~~~~-~l~~~f~~~~~~~~~~r~~~l~~~~~~~~~k~~~~~~~~g 391 (392)
T PRK08773 331 RLQRWARTRRSDNTV------AAYGFD-AINRVFSNDEMHLTLLRGSVLGLAGKLPPLVDALWKRASG 391 (392)
T ss_pred HHHHHHHHHHHHHHH------HHHHHH-HHHHHHcCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHcC
Confidence 999999999999863 333344 36678999999999999999999998884 888887775
No 19
>PRK06996 hypothetical protein; Provisional
Probab=99.97 E-value=2.4e-31 Score=271.66 Aligned_cols=271 Identities=16% Similarity=0.134 Sum_probs=184.7
Q ss_pred eEEEeeHHHHHHHHHhccCC--CeEecCCeEEEEEeeCCeEEEEEccC---cEEEeeEEEEecCC-Cchhhcccc-CCCC
Q 010723 21 VTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENG---QCYAGDLLIGADGI-WSKVRKNLF-GPQE 93 (502)
Q Consensus 21 ~~~~i~R~~L~~~L~~~~~~--~~v~~~~~v~~i~~~~~~v~v~~~dg---~~~~adlvVgADG~-~S~vR~~l~-~~~~ 93 (502)
++++++|..|++.|.+++.. +.++++++++++++++++|++++.++ ++++||+||||||. +|.+|+.+. ....
T Consensus 108 ~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~~~~~~~ 187 (398)
T PRK06996 108 LGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGGLFHDQKADAGDSARR 187 (398)
T ss_pred CEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCCCchHHHHHcCCCcee
Confidence 59999999999999998743 57899999999999999999999865 58999999999997 578888874 3344
Q ss_pred CcccceEEEEEEecCCCCCccccceEEEecCceEEEEEeCCCCe---EEEEEEEcCCCC---CCCCCcchHHHHHHHhhC
Q 010723 94 AIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGK---MQWYAFHKEPAG---GVDGPEGKKERLLKIFEG 167 (502)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~ 167 (502)
..|.+ .++++.+.. ..+.+...++.+...+ .+.++|.+++. ..+++....... .........+.+.+.|..
T Consensus 188 ~~~~~-~~~~~~v~~-~~~~~~~~~~~~~~~G-~~~~lp~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 264 (398)
T PRK06996 188 RDYGQ-TAIVGTVTV-SAPRPGWAWERFTHEG-PLALLPLGGPRQADYALVWCCAPDEAARRAALPDDAFLAELGAAFGT 264 (398)
T ss_pred eecCC-eEEEEEEEc-cCCCCCEEEEEecCCC-CeEEeECCCCCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 45554 566655432 1222333444455444 45555776543 333332221000 000111223334444433
Q ss_pred CChHHHHHHHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCC
Q 010723 168 WCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKT 247 (502)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~ 247 (502)
+.+.+ . ...+ ...+++. ...+.+|+.|||+|+|||||+|+|++|||+|+||+||.+|+++|...
T Consensus 265 ~~~~~---~-~~~~--~~~~~l~-~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~--------- 328 (398)
T PRK06996 265 RMGRF---T-RIAG--RHAFPLG-LNAARTLVNGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSDH--------- 328 (398)
T ss_pred ccCce---E-Eecc--eEEEeee-cccccceecCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHhc---------
Confidence 22111 0 1111 1123333 34456899999999999999999999999999999999999999652
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCcccc--eeeeeccc
Q 010723 248 PIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGG--RFFIDLAM 318 (502)
Q Consensus 248 ~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~--~~~~~~~~ 318 (502)
.....+|++|+++|++++..++..++.+. .+|.+..+++..+|+.+|.+++.++. +.+++++|
T Consensus 329 -~~~~~~L~~Y~~~R~~~~~~~~~~s~~l~-------~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~ 393 (398)
T PRK06996 329 -GATPLALATFAARRALDRRVTIGATDLLP-------RLFTVDSRPLAHLRGAALTALEFVPPLKHALARQMM 393 (398)
T ss_pred -CCcHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHcCCchHHHHHHhHHHHHHhhCHHHHHHHHHHHc
Confidence 12357799999999999998887777633 45666677888999999999888774 66666665
No 20
>PRK06185 hypothetical protein; Provisional
Probab=99.97 E-value=4.2e-30 Score=263.78 Aligned_cols=281 Identities=19% Similarity=0.172 Sum_probs=193.5
Q ss_pred CCCeEEEeeHHHHHHHHHhccC---CCeEecCCeEEEEEeeCCeE---EEEEccCc-EEEeeEEEEecCCCchhhccc-c
Q 010723 18 GLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKV---SVVLENGQ-CYAGDLLIGADGIWSKVRKNL-F 89 (502)
Q Consensus 18 ~~p~~~~i~R~~L~~~L~~~~~---~~~v~~~~~v~~i~~~~~~v---~v~~~dg~-~~~adlvVgADG~~S~vR~~l-~ 89 (502)
..++++.++|..|.+.|.+.+. .++++++++|++++.+++.+ ++...+|+ +++||+||+|||.+|.+|+.+ +
T Consensus 98 ~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~gi 177 (407)
T PRK06185 98 PYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALAGL 177 (407)
T ss_pred CCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHcCC
Confidence 3467899999999999998763 46789999999998877765 34445674 799999999999999999998 4
Q ss_pred CCCCCcccceEEEEEEecCCCCCccccceEEEecCceEEEEEeCCCCeEEEEEEEcCCCCCCCCCcchHHHHHHHhhCCC
Q 010723 90 GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWC 169 (502)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 169 (502)
......|.+...+.. ... +.......++. +.+++.+++.|.+ +.+.+++..+.. ..........+.+.+.+..+.
T Consensus 178 ~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~-~~~~g~~~llP~~-~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 252 (407)
T PRK06185 178 EVREFGAPMDVLWFR-LPR-EPDDPESLMGR-FGPGQGLIMIDRG-DYWQCGYVIPKG-GYAALRAAGLEAFRERVAELA 252 (407)
T ss_pred CccccCCCceeEEEe-cCC-CCCCCcccceE-ecCCcEEEEEcCC-CeEEEEEEecCC-CchhhhhhhHHHHHHHHHHhC
Confidence 444556665444332 221 11111223443 4455566666876 554444433221 111112234456666666666
Q ss_pred hHHHHHHHcCCc-cceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCCh
Q 010723 170 DNVVDLILATDE-EAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTP 248 (502)
Q Consensus 170 ~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~ 248 (502)
|.+.+.+..... .....+++.. ..+.+|..+|++|+|||||.+||++|||+|+||+||..|+++|.++++.+
T Consensus 253 p~~~~~l~~~~~~~~~~~~~l~~-~~~~~~~~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~~~~------ 325 (407)
T PRK06185 253 PELADRVAELKSWDDVKLLDVRV-DRLRRWHRPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRG------ 325 (407)
T ss_pred ccHHHHHhhcCCccccEEEEEec-cccccccCCCeEEEeccccccCcccccchhHHHHHHHHHHHHHHHHhccC------
Confidence 655554443222 1122233332 45678999999999999999999999999999999999999999887542
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhcCCC--CccchhhhcccCCCCcccc--eeeeecc
Q 010723 249 IDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGL--GPLSFLTKFRIPHPGRVGG--RFFIDLA 317 (502)
Q Consensus 249 ~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~r~~~l~~~~~~~~--~~~~~~~ 317 (502)
+....+|+.|+++|++++..++.++.. +.++|++.. +++..+|+++|..+++++. +++++++
T Consensus 326 ~~~~~~L~~Y~~~R~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~ 391 (407)
T PRK06185 326 RVSDRDLAAVQRRREFPTRVTQALQRR-------IQRRLLAPALAGRGPLGPPLLLRLLNRLPWLRRLPARLV 391 (407)
T ss_pred CccHHHHHHHHHHhhhHHHHHHHHHHH-------HHHhhccccccCccccCCchHHHHHHhChhHHHhhHHhe
Confidence 123489999999999999876555544 445667777 8899999999999998874 6666654
No 21
>PRK07045 putative monooxygenase; Reviewed
Probab=99.97 E-value=8.9e-30 Score=259.59 Aligned_cols=265 Identities=19% Similarity=0.229 Sum_probs=176.9
Q ss_pred EEEeeHHHHHHHHHhccC---CCeEecCCeEEEEEeeCCe--EEEEEccCcEEEeeEEEEecCCCchhhccccC--CCCC
Q 010723 22 TRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDK--VSVVLENGQCYAGDLLIGADGIWSKVRKNLFG--PQEA 94 (502)
Q Consensus 22 ~~~i~R~~L~~~L~~~~~---~~~v~~~~~v~~i~~~~~~--v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~--~~~~ 94 (502)
.+.++|..|+++|.+.+. +++++++++|++++.++++ +.|++++|+++++|+||||||++|.||+.+.+ ....
T Consensus 100 ~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~~~~~~~~~~~ 179 (388)
T PRK07045 100 FILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMIRDDVLRMPAERV 179 (388)
T ss_pred eEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChHHHHHhhCCCcccC
Confidence 456899999999998763 3679999999999987665 46889999999999999999999999997643 3334
Q ss_pred cccceEEEEEEecCCCCCccccceEEEecCceEEEEEeCCCCeEEEEEEEcCCCCCCCCCcchHHHHHHHhhCCC-hHHH
Q 010723 95 IYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWC-DNVV 173 (502)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 173 (502)
.|.+... .+.+... .........++..++++++.+|.+++...|++..+.............+.+.+.+..|. +.+.
T Consensus 180 ~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (388)
T PRK07045 180 PYATPMA-FGTIALT-DSVRECNRLYVDSNQGLAYFYPIGDQATRLVVSFPADEMQGYLADTTRTKLLARLNEFVGDESA 257 (388)
T ss_pred CCCccee-EEEEecc-CCccccceEEEcCCCceEEEEEcCCCcEEEEEEeccccchhccCCCCHHHHHHHHhhhcCccch
Confidence 4554333 3333221 11122222223333455667788777766666544322111111223455666666654 3333
Q ss_pred HHHHcCCcc-ceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHH
Q 010723 174 DLILATDEE-AILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIV 252 (502)
Q Consensus 174 ~~~~~~~~~-~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~ 252 (502)
+.+...... .+...++. ...+++|+.|||+|||||||.|+|++|||+|+||+||..|+++|..++.+ ..+.+
T Consensus 258 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~------~~~~~ 330 (388)
T PRK07045 258 DAMAAIGAGTAFPLIPLG-RMNLDRYHKRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSG------QIALA 330 (388)
T ss_pred HHHhccCcccccceeecC-ccccccccCCCEEEEEccccccCCCccccHHHHHHHHHHHHHHHHhhcCC------chhHH
Confidence 333322211 11112232 23457899999999999999999999999999999999999999887543 23567
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhccc
Q 010723 253 SALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRI 302 (502)
Q Consensus 253 ~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l 302 (502)
++|+.|+++|++++..++..++... ..|.+....+..+|..++
T Consensus 331 ~~L~~Ye~~R~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 373 (388)
T PRK07045 331 DALERFERIRRPVNEAVISYGHALA-------TTYHDRAALVANFRSQLQ 373 (388)
T ss_pred HHHHHHHHHhhhHHHHHHhhhHHHh-------hhcccchhHHHHHHhhhh
Confidence 8999999999999998887776533 334455555566665543
No 22
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.97 E-value=3.5e-31 Score=270.08 Aligned_cols=279 Identities=17% Similarity=0.158 Sum_probs=189.9
Q ss_pred CCeEEEeeHHHHHHHHHhccCC--CeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhhccc-cCCCCCc
Q 010723 19 LPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL-FGPQEAI 95 (502)
Q Consensus 19 ~p~~~~i~R~~L~~~L~~~~~~--~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l-~~~~~~~ 95 (502)
.+++|.++|..|.+.|.+++.. ...+++++|++++.++++++|++++|++++||+||+|||.+|.+|+.+ +......
T Consensus 102 ~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~g~~~~~~~ 181 (388)
T PRK07494 102 DAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNSPVREAAGIGVRTWS 181 (388)
T ss_pred CccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCchhHHhcCCCceecC
Confidence 4678999999999999997643 234889999999998899999999999999999999999999999998 3333445
Q ss_pred ccceEEEEEEecCCCCCccccceEEEecCceEEEEEeCCCCeEEEEEEEcCCCCCCCCCcchHHHHHHHhhCCChHHHHH
Q 010723 96 YSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDL 175 (502)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 175 (502)
|.+ .++...+.. +.+.....++++... +.+..+|++++...+++....+. .........+++.+.+..+ +...
T Consensus 182 ~~~-~~~~~~v~~-~~~~~~~~~~~~~~~-g~~~~~Pl~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~ 254 (388)
T PRK07494 182 YPQ-KALVLNFTH-SRPHQNVSTEFHTEG-GPFTQVPLPGRRSSLVWVVRPAE-AERLLALSDAALSAAIEER---MQSM 254 (388)
T ss_pred CCC-EEEEEEEec-cCCCCCEEEEEeCCC-CcEEEEECCCCcEEEEEECCHHH-HHHHHcCCHHHHHHHHHHH---Hhhh
Confidence 555 334333321 112222234444444 44566788766655554322110 0000011223343333322 1222
Q ss_pred HHcCCc-cceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHH
Q 010723 176 ILATDE-EAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSA 254 (502)
Q Consensus 176 ~~~~~~-~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~ 254 (502)
+..... .....+++.. ....+|..+||+|+|||||.++|++|||+|+||+||..|+++|..... ......+
T Consensus 255 l~~~~~~~~~~~~~l~~-~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~-------~~~~~~~ 326 (388)
T PRK07494 255 LGKLTLEPGRQAWPLSG-QVAHRFAAGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRPE-------DPGSAAV 326 (388)
T ss_pred cCCeEEccCCcEeechH-HHHHhhccCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcCC-------CcchHHH
Confidence 211110 1123345543 234689999999999999999999999999999999999999987421 1345789
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCcccc--eeeeeccch
Q 010723 255 LKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGG--RFFIDLAMP 319 (502)
Q Consensus 255 L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~--~~~~~~~~~ 319 (502)
|+.|+++|++++..++. .++. +...|.+..+++..+|+++|.++++++. +++++++||
T Consensus 327 L~~Y~~~R~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~~ 386 (388)
T PRK07494 327 LAAYDRARRPDILSRTA------SVDL-LNRSLLSDFLPVQDLRAAGLHLLYSFGPLRRLFMREGLG 386 (388)
T ss_pred HHHHHHHHHHHHHHHHH------HHHH-HHHHHcCCchHHHHHHHHHHHHHhhCHHHHHHHHHHhcC
Confidence 99999999999975543 3333 4567788888999999999999998884 777777765
No 23
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.97 E-value=3.9e-29 Score=255.77 Aligned_cols=246 Identities=30% Similarity=0.419 Sum_probs=185.1
Q ss_pred EEEeeHHHHHHHHHhccC---CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhhccccCCCCCcccc
Q 010723 22 TRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSG 98 (502)
Q Consensus 22 ~~~i~R~~L~~~L~~~~~---~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~ 98 (502)
.++++|.+|.+.|.+.+. .+.++++++|++++.+++++++++.+|++++||+||+|||.+|.+|+.+.+. ...+.+
T Consensus 103 ~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~~r~~~~g~-~~~~~g 181 (396)
T PRK08163 103 YAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSVVRQSLVGD-APRVTG 181 (396)
T ss_pred EEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChHHHhhccCC-CCCccc
Confidence 357999999999999873 3678999999999988888999999999999999999999999999998544 455666
Q ss_pred eEEEEEEecCC--CCCccccceEEEecCceEEEEEeCCCCeE-EEEEEEcCCC-CCCCCCcchHHHHHHHhhCCChHHHH
Q 010723 99 YTCYTGIADFV--PADIESVGYRVFLGHKQYFVSSDVGAGKM-QWYAFHKEPA-GGVDGPEGKKERLLKIFEGWCDNVVD 174 (502)
Q Consensus 99 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~ 174 (502)
..++.+.+... +..........+.+++.+++.+|+.++.. .+++...... ..........+++.+.|..|.+.+.+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 261 (396)
T PRK08163 182 HVVYRAVIDVDDMPEDLRINAPVLWAGPHCHLVHYPLRGGEQYNLVVTFHSREQEEWGVKDGSKEEVLSYFEGIHPRPRQ 261 (396)
T ss_pred cEEEEEEEeHHHCcchhccCccEEEEcCCceEEEEEecCCeEEEEEEEECCCCCcccccCCCCHHHHHHHHcCCChHHHH
Confidence 67777665421 11111122345667777788889877653 3443332211 11112233567888999999998888
Q ss_pred HHHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHH
Q 010723 175 LILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSA 254 (502)
Q Consensus 175 ~~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~ 254 (502)
++..... +..+.++...+..+|+.|||+|+|||||+|+|++|||+|+||+||.+|+++|... ..+.+.+
T Consensus 262 ~~~~~~~--~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~---------~~~~~~a 330 (396)
T PRK08163 262 MLDKPTS--WKRWATADREPVAKWSTGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALEGC---------DGDAEAA 330 (396)
T ss_pred HHhcCCc--eeEccccCCCcccccccCcEEEEecccccCCcchhccHHHHHHHHHHHHHHHHhc---------cccHHHH
Confidence 7765432 3334455555667999999999999999999999999999999999999999752 1346889
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Q 010723 255 LKSYERARRLRVAVIHGLARSAAVM 279 (502)
Q Consensus 255 L~~Y~~~R~~~~~~~~~~s~~~~~~ 279 (502)
|+.|+++|++++..++..++.+..+
T Consensus 331 l~~y~~~R~~r~~~~~~~s~~~~~~ 355 (396)
T PRK08163 331 FALYESVRIPRTARVVLSAREMGRI 355 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 9999999999999999888775543
No 24
>PRK06834 hypothetical protein; Provisional
Probab=99.97 E-value=1.5e-29 Score=263.26 Aligned_cols=279 Identities=19% Similarity=0.178 Sum_probs=184.5
Q ss_pred CCCeEEEeeHHHHHHHHHhccCC--CeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhhccc-cCCCCC
Q 010723 18 GLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL-FGPQEA 94 (502)
Q Consensus 18 ~~p~~~~i~R~~L~~~L~~~~~~--~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l-~~~~~~ 94 (502)
.+++++.+.|..|++.|.+.+.. +.++++++|++++++++++++++.+|++++||+||+|||++|.||+.+ +.....
T Consensus 90 ~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~vR~~lgi~~~g~ 169 (488)
T PRK06834 90 RHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLVRKAAGIDFPGW 169 (488)
T ss_pred CCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCcHhhcCCCCCCC
Confidence 34778999999999999987743 679999999999999999999998888999999999999999999998 455556
Q ss_pred cccceEEEEEEecCCCCCccccceEEEecCceEEEEEeCC-CCeEEEEEEEcCCCCCCCCCcchHHHHHHHhhCCC-hHH
Q 010723 95 IYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVG-AGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWC-DNV 172 (502)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~ 172 (502)
.|... .+.+.+.. +... . +..+..+...+.+.|.. ++.+.+++..... .... ....+++.+.+.... ..+
T Consensus 170 ~~~~~-~~~~dv~~-~~~~-~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~l~~~~g~~~ 241 (488)
T PRK06834 170 DPTTS-YLIAEVEM-TEEP-E--WGVHRDALGIHAFGRLEDEGPVRVMVTEKQV--GATG-EPTLDDLREALIAVYGTDY 241 (488)
T ss_pred CcceE-EEEEEEEe-cCCC-C--cceeeCCCceEEEeccCCCCeEEEEEecCCC--CCCC-CCCHHHHHHHHHHhhCCCC
Confidence 66543 22222221 1111 1 11222333344444554 4544443332211 1111 112233333332211 111
Q ss_pred HHHHHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHH
Q 010723 173 VDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIV 252 (502)
Q Consensus 173 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~ 252 (502)
. ......+..++.. ...+.+|++|||+|+|||||.|+|++|||||+||+||.+|+|+|+.++++ ...+
T Consensus 242 ~----~~~~~~~~~~~~~-~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~g-------~~~~ 309 (488)
T PRK06834 242 G----IHSPTWISRFTDM-ARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKG-------TSPE 309 (488)
T ss_pred c----cccceeEEecccc-ceecccccCCcEEEEeeccccCCccccccccccHHHHHHHHHHHHHHHcC-------CCcH
Confidence 1 0111111112221 24567999999999999999999999999999999999999999998864 2357
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCcccc-eeeeeccchhHHHh
Q 010723 253 SALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGG-RFFIDLAMPLMLSW 324 (502)
Q Consensus 253 ~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~-~~~~~~~~~~~~~~ 324 (502)
.+|++|+++|++++..++..+..+. .++. ..+....+|+..+.++...+. +.+.+.++|+.++|
T Consensus 310 ~lLd~Ye~eRrp~~~~~~~~t~~~~-------~~~~-~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~g~~~~y 374 (488)
T PRK06834 310 SLLDTYHAERHPVAARVLRNTMAQV-------ALLR-PDDRTEALRDIVAELLGMDEPRKRIAAMMSGLDIHY 374 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------Hhhc-CChHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCccc
Confidence 8999999999999998877665432 1333 345567889988877766553 55666666666665
No 25
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.97 E-value=2.5e-30 Score=265.19 Aligned_cols=282 Identities=18% Similarity=0.157 Sum_probs=190.3
Q ss_pred cCCCeEEEeeHHHHHHHHHhccC--CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhhcccc-CCCC
Q 010723 17 KGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLF-GPQE 93 (502)
Q Consensus 17 ~~~p~~~~i~R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~-~~~~ 93 (502)
.+.++++.++|..|++.|.+.+. .+.++++++|++++++++.+.+++++|++++||+||+|||.+|.+|+.+. ....
T Consensus 100 ~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~vr~~~g~~~~~ 179 (403)
T PRK07333 100 PGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSKLRELAGIKTVG 179 (403)
T ss_pred CCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChHHHHHcCCCccc
Confidence 35677899999999999999874 36799999999999988999999999999999999999999999999883 3333
Q ss_pred CcccceEEEEEEecCCCCCccccceEEEecCceEEEEEeCCCCeEEEEEEEcCCC--CCC-CCCcchHHHHHHHhhCCCh
Q 010723 94 AIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPA--GGV-DGPEGKKERLLKIFEGWCD 170 (502)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~l~~~~~~~~~ 170 (502)
..|.. .++....... .......... +.++++++++|++++...|++...... ... .......+.+.+.+..+.+
T Consensus 180 ~~~~~-~~~~~~~~~~-~~~~~~~~~~-~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 256 (403)
T PRK07333 180 WDYGQ-SGIVCTVEHE-RPHGGRAEEH-FLPAGPFAILPLKGNRSSLVWTERTADAERLVALDDLVFEAELEQRFGHRLG 256 (403)
T ss_pred ccCCC-EEEEEEEEcC-CCCCCEEEEE-eCCCCceEEeECCCCCeEEEEECCHHHHHHHHCCCHHHHHHHHHHHhhhhcC
Confidence 44544 3333333221 1111222333 334455667798888776654321100 000 0001112233333333221
Q ss_pred HHHHHHHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCChhh
Q 010723 171 NVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPID 250 (502)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~ 250 (502)
.+. ... ....+++.. ....+|+.|||+|||||||.++|++|||+|+||+||.+|+++|..+++.+ ....
T Consensus 257 ~~~----~~~--~~~~~~~~~-~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~----~~~~ 325 (403)
T PRK07333 257 ELK----VLG--KRRAFPLGL-TLARSFVAPRFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARLG----LDIG 325 (403)
T ss_pred ceE----ecc--CccEeechh-hhhhhccCCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHhcC----CCCC
Confidence 110 010 111123322 34568999999999999999999999999999999999999999886532 1123
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCccc--ceeeeeccch
Q 010723 251 IVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVG--GRFFIDLAMP 319 (502)
Q Consensus 251 ~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~--~~~~~~~~~~ 319 (502)
...+|+.|+++|++++..++..++.+ ..+|..+.++...+|+..|..++.++ +++++++++|
T Consensus 326 ~~~~L~~Ye~~R~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g 389 (403)
T PRK07333 326 SLDVLERYQRWRRFDTVRMGVTTDVL-------NRLFSNDSTLLRSVRDIGLGLVDRLPKLKSFFIRQAAG 389 (403)
T ss_pred CHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHhC
Confidence 57899999999999999877666553 33556666778889999988887766 3777777765
No 26
>PRK06847 hypothetical protein; Provisional
Probab=99.97 E-value=6e-29 Score=252.50 Aligned_cols=247 Identities=26% Similarity=0.361 Sum_probs=180.8
Q ss_pred CeEEEeeHHHHHHHHHhccC--CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhhccccCC-CCCcc
Q 010723 20 PVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGP-QEAIY 96 (502)
Q Consensus 20 p~~~~i~R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~-~~~~~ 96 (502)
+....+.|..|.+.|.+.+. .+.++++++|++++.+++++++++.+|+++++|+||+|||.+|.+|+.+++. ..+.|
T Consensus 99 ~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~~r~~l~~~~~~~~~ 178 (375)
T PRK06847 99 PGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSKVRSLVFPDEPEPEY 178 (375)
T ss_pred CCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcchhhHhcCCCCCcee
Confidence 44568999999999998774 3679999999999988888999999999999999999999999999988543 35677
Q ss_pred cceEEEEEEecCCCCCccccceEEEecCceEEEEEeCCCCeEEEEEEEcCCCCCCCCCcchHHHHHHHhhCCCh-HHHHH
Q 010723 97 SGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCD-NVVDL 175 (502)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~ 175 (502)
.+..+|.+.+... ...+ ....|.+++..+..+|.+++...++.....+...........+.+.+.+..|.+ .+..+
T Consensus 179 ~g~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (375)
T PRK06847 179 TGQGVWRAVLPRP-AEVD--RSLMYLGPTTKAGVVPLSEDLMYLFVTEPRPDNPRIEPDTLAALLRELLAPFGGPVLQEL 255 (375)
T ss_pred ccceEEEEEecCC-CCcc--ceEEEeCCCcEEEEEcCCCCeEEEEEeccCcccccCChHHHHHHHHHHHhhcCchHHHHH
Confidence 7777776654322 1221 235566777777888888776655544332221111122334556677777865 33443
Q ss_pred HHcCC-ccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHH
Q 010723 176 ILATD-EEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSA 254 (502)
Q Consensus 176 ~~~~~-~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~ 254 (502)
..... ...+..+++.......+|..|||+|||||||.|+|++|||+|+||+||..|+++|... ...+++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~~~----------~~~~~a 325 (375)
T PRK06847 256 REQITDDAQVVYRPLETLLVPAPWHRGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELARH----------DSLEAA 325 (375)
T ss_pred HHhcCCccceeeccHhhccCCCCccCCeEEEEechhccCCCCccccHHHHHHHHHHHHHHHhhC----------CcHHHH
Confidence 33222 1122333444444456799999999999999999999999999999999999999752 356889
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Q 010723 255 LKSYERARRLRVAVIHGLARSAAVM 279 (502)
Q Consensus 255 L~~Y~~~R~~~~~~~~~~s~~~~~~ 279 (502)
|+.|+++|++++..++..++....+
T Consensus 326 l~~Y~~~R~~r~~~~~~~s~~~~~~ 350 (375)
T PRK06847 326 LQAYYARRWERCRMVVEASARIGRI 350 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 9999999999999999988865543
No 27
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.97 E-value=6.3e-30 Score=263.19 Aligned_cols=280 Identities=20% Similarity=0.197 Sum_probs=183.4
Q ss_pred CeEEEeeHHHHHHHHHhccC---CCeEecCCeEEEEEeeCCeEEEEEccC---cEEEeeEEEEecCCCchhhcccc-CCC
Q 010723 20 PVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENG---QCYAGDLLIGADGIWSKVRKNLF-GPQ 92 (502)
Q Consensus 20 p~~~~i~R~~L~~~L~~~~~---~~~v~~~~~v~~i~~~~~~v~v~~~dg---~~~~adlvVgADG~~S~vR~~l~-~~~ 92 (502)
..++++.+..|.+.|.+++. ++.++++++|+++++++++++|++.++ .+++||+||||||++|.||+.+. ...
T Consensus 113 ~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S~vR~~~~~~~~ 192 (415)
T PRK07364 113 ALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARSPIRQAAGIKTK 192 (415)
T ss_pred ccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCchhHHHhCCCce
Confidence 35677776689999988763 467899999999999888888988743 36999999999999999999883 333
Q ss_pred CCcccceEEEEEEecCCCCCccccceEEEecCceEEEEEeCCCCeEEEEEEEcCCCC--CCC-CCcchHHHHHHHhhCCC
Q 010723 93 EAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAG--GVD-GPEGKKERLLKIFEGWC 169 (502)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~l~~~~~~~~ 169 (502)
...|.+ .++...+.. +.......+..|... ++++++|.+++...+++....... ... ..+...+.+.+.+..+.
T Consensus 193 ~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~-g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 269 (415)
T PRK07364 193 GWKYWQ-SCVTATVKH-EAPHNDIAYERFWPS-GPFAILPLPGNRCQIVWTAPHAQAKALLALPEAEFLAELQQRYGDQL 269 (415)
T ss_pred eecCCC-EEEEEEEEc-cCCCCCEEEEEecCC-CCeEEeECCCCCEEEEEECCHHHHHHHHCCCHHHHHHHHHHHhhhhh
Confidence 344433 333333221 112222233334444 446677888777666543221100 000 01112223333333322
Q ss_pred hHHHHHHHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCChh
Q 010723 170 DNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPI 249 (502)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~ 249 (502)
+.+ .... ....+++.. ..+.+|++||++|+|||||+|+|++|||+|+||+||..|+++|...+..+ ...
T Consensus 270 ~~~----~~~~--~~~~~~~~~-~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~~~~~~----~~~ 338 (415)
T PRK07364 270 GKL----ELLG--DRFLFPVQL-MQSDRYVQHRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRG----EDI 338 (415)
T ss_pred cCc----eecC--CCceecchh-hhhhhhcCCcEEEEecccccCCCcccccHhHHHHHHHHHHHHHHHHHhcC----CCc
Confidence 211 1111 122234433 23578999999999999999999999999999999999999998875432 111
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCccc--ceeeeeccchh
Q 010723 250 DIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVG--GRFFIDLAMPL 320 (502)
Q Consensus 250 ~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~--~~~~~~~~~~~ 320 (502)
....+|+.|+++|++++..++.+++.+ ..+|.++..+..++|+..+.++++++ ++++++++||+
T Consensus 339 ~~~~~L~~Y~~~R~~~~~~~~~~s~~~-------~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~ 404 (415)
T PRK07364 339 GSLAVLKRYERWRKRENWLILGFTDLL-------DRLFSNQWWPLVVVRRLGLWLLRHVPPLKRLALRLMTGL 404 (415)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHcCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHcCC
Confidence 234899999999999998877766653 33556666778889999988888766 36677777654
No 28
>PRK09126 hypothetical protein; Provisional
Probab=99.96 E-value=3e-29 Score=256.21 Aligned_cols=277 Identities=17% Similarity=0.168 Sum_probs=185.9
Q ss_pred CeEEEeeHHHHHHHHHhccC---CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhhcccc-CCCCCc
Q 010723 20 PVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLF-GPQEAI 95 (502)
Q Consensus 20 p~~~~i~R~~L~~~L~~~~~---~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~-~~~~~~ 95 (502)
..++.++|..|++.|++.+. .+.++++++|++++.+++.++|++++|++++||+||||||.+|.+|+.+. +.....
T Consensus 102 ~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~g~~~~~~~ 181 (392)
T PRK09126 102 ALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSATRRQLGIGADMHD 181 (392)
T ss_pred cceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCchhhHhcCCCccccc
Confidence 46889999999999998763 46799999999999888889999999999999999999999999999983 333333
Q ss_pred ccceEEEEEEecCCCCCccccceEEEecCceEEEEEeCCCCeEEEEEEEcCCCC--CCC-CCcchHHHHHHHhhCCChHH
Q 010723 96 YSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAG--GVD-GPEGKKERLLKIFEGWCDNV 172 (502)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~l~~~~~~~~~~~ 172 (502)
|.. .++........ + .......+++.+..++++|.+++.++|++..+.... ... ..+...+++.+.|..+...
T Consensus 182 ~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 257 (392)
T PRK09126 182 FGR-TMLVCRMRHEL-P-HHHTAWEWFGYGQTLALLPLNGHLSSLVLTLPPDQIEALLALDPEAFAAEVTARFKGRLGA- 257 (392)
T ss_pred cCC-eEEEEEEeccC-C-CCCEEEEEecCCCCeEEeECCCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhccC-
Confidence 443 33333322111 1 112223455666677788998887777664422100 000 0111112222222221100
Q ss_pred HHHHHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHH
Q 010723 173 VDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIV 252 (502)
Q Consensus 173 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~ 252 (502)
+... .....+++.. ..+++|..+||+|+|||||.++|++|||+|+||+||..|+++|..+++.+ .+...+
T Consensus 258 ---~~~~--~~~~~~~~~~-~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~~~----~~~~~~ 327 (392)
T PRK09126 258 ---MRLV--SSRHAYPLVA-VYAHRFVAKRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARRG----QDIGAA 327 (392)
T ss_pred ---eEEc--CCCcEeechH-HHHHHHhhcceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHhcC----CCCccH
Confidence 0000 1112233332 23468999999999999999999999999999999999999999886532 112347
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCcccc--eeeeecc
Q 010723 253 SALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGG--RFFIDLA 317 (502)
Q Consensus 253 ~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~--~~~~~~~ 317 (502)
++|+.|+++|++++..++..++.+. .++....++...+|+..|..+.+++. +++++.+
T Consensus 328 ~~l~~Y~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK09126 328 SLLERYERKHRLATRPLYHATNAIA-------ALYTDDRPPARLLRRAVLRAANRFPPLKQAIAKQL 387 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHCCCchHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 8999999999999998887777533 34555566778899998888776653 4444443
No 29
>PRK08244 hypothetical protein; Provisional
Probab=99.96 E-value=4.4e-29 Score=262.00 Aligned_cols=245 Identities=19% Similarity=0.169 Sum_probs=164.2
Q ss_pred CCCeEEEeeHHHHHHHHHhccC--CCeEecCCeEEEEEeeCCeEEEEEc--cC-cEEEeeEEEEecCCCchhhccc-cCC
Q 010723 18 GLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLE--NG-QCYAGDLLIGADGIWSKVRKNL-FGP 91 (502)
Q Consensus 18 ~~p~~~~i~R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~v~~~--dg-~~~~adlvVgADG~~S~vR~~l-~~~ 91 (502)
..++++.++|..|+++|.+.+. .+.+++++++++++++++++++++. +| ++++||+||||||++|.||+.+ +..
T Consensus 90 ~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~vR~~lgi~~ 169 (493)
T PRK08244 90 SSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIVRKQAGIAF 169 (493)
T ss_pred CCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHHHHhcCCCc
Confidence 4567889999999999998763 3679999999999998888888775 45 4799999999999999999998 333
Q ss_pred CCCcccceEEEEEEecCCCCCccccceEEEecCceEEEEEeCCCCeEEEEEEEcCCCCCCCCCcchHHHHHHHhhCCChH
Q 010723 92 QEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDN 171 (502)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 171 (502)
....+.. .++.+.+.. ....... ...++.+++.++++|.+++...|++................+++.+.+..+...
T Consensus 170 ~g~~~~~-~~~~~~~~~-~~~~~~~-~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 246 (493)
T PRK08244 170 PGTDATF-TAMLGDVVL-KDPPPSS-VLSLCTREGGVMIVPLSGGIYRVLIIDPERPQVPKDEPVTLEELKTSLIRICGT 246 (493)
T ss_pred cCCCcce-EEEEEEEEe-cCCCCcc-eeEEEeCCceEEEEECCCCeEEEEEEcCCcccccCCCCCCHHHHHHHHHHhhCC
Confidence 3433332 222222211 1111111 223445666778889988877665543221111111122345555554433211
Q ss_pred HHHHHHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCChhhH
Q 010723 172 VVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDI 251 (502)
Q Consensus 172 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~ 251 (502)
. +..........+.+.. ..+++|++|||+|+|||||.++|++|||||+||+||.+|+|+|+.++++ ...
T Consensus 247 ~---~~~~~~~~~~~~~~~~-~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g-------~~~ 315 (493)
T PRK08244 247 D---FGLNDPVWMSRFGNAT-RQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKG-------WAP 315 (493)
T ss_pred C---CCcCCeeEEEecccce-eeHhhhccCcEEEeecceeccCCccccccccchhhHHHHHHHHHHHHcC-------CCC
Confidence 0 0011111111112211 3456899999999999999999999999999999999999999998754 233
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Q 010723 252 VSALKSYERARRLRVAVIHGLARSA 276 (502)
Q Consensus 252 ~~~L~~Y~~~R~~~~~~~~~~s~~~ 276 (502)
+.+|+.|+++|++.++.++..+...
T Consensus 316 ~~lL~~Ye~eR~~~~~~~~~~~~~~ 340 (493)
T PRK08244 316 DWLLDSYHAERHPVGTALLRNTEVQ 340 (493)
T ss_pred chhhhhhHHHHHHHHHHHHHHhHHH
Confidence 6789999999999999887766543
No 30
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.96 E-value=4.3e-29 Score=254.22 Aligned_cols=268 Identities=18% Similarity=0.156 Sum_probs=176.8
Q ss_pred CeEEEeeHHHHHHHHHhccC---CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhhcccc-CCCCCc
Q 010723 20 PVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLF-GPQEAI 95 (502)
Q Consensus 20 p~~~~i~R~~L~~~L~~~~~---~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~-~~~~~~ 95 (502)
+.+|.++|..|++.|.+.+. +++++++++|++++.+++++++++++|++++||+||||||.+|.+|+.+. ......
T Consensus 97 ~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~ 176 (382)
T TIGR01984 97 ALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANSKVRELLSIPTEEHD 176 (382)
T ss_pred ccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCChHHHHHcCCCCcccc
Confidence 35799999999999999874 46789999999999888899999999999999999999999999999984 333333
Q ss_pred ccceEEEEEEecCCCCCccccceEEEecCceEEEEEeCCCC-eEEEEEEEcCCCCCCCCCcchHHHHHHHh-hCCChHHH
Q 010723 96 YSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAG-KMQWYAFHKEPAGGVDGPEGKKERLLKIF-EGWCDNVV 173 (502)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~ 173 (502)
|.+ .++...+... .+.....+..+ ..+..+.++|.+++ ...+++..+.... ........+.+.+.+ +.+.+.+.
T Consensus 177 ~~~-~~~~~~~~~~-~~~~~~~~~~~-~~~g~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 252 (382)
T TIGR01984 177 YNQ-TALIANIRHE-QPHQGCAFERF-TPHGPLALLPLKDNYRSSLVWCLPSKQA-DTIANLPDAEFLAELQQAFGWRLG 252 (382)
T ss_pred cCC-EEEEEEEEec-CCCCCEEEEee-CCCCCeEECcCCCCCCEEEEEECCHHHH-HHHHcCCHHHHHHHHHHHHhhhcc
Confidence 433 4444433221 11122223333 33445666788777 5555443321100 000000111222211 11211111
Q ss_pred HHHHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHHH
Q 010723 174 DLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVS 253 (502)
Q Consensus 174 ~~~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~ 253 (502)
... .. .....+++.. ....+|..+||+|+|||||+|+|++|||+|+||+||..|+++|..++. ....++
T Consensus 253 ~~~-~~--~~~~~~~~~~-~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~-------~~~~~~ 321 (382)
T TIGR01984 253 KIT-QV--GERKTYPLKL-RIAETHVHPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDARI-------DLGTYA 321 (382)
T ss_pred CeE-Ec--CCccEeecch-hhhhheecCCEEEEeecccccCCccccchhhhHHHHHHHHHHHHHhcc-------CccCHH
Confidence 111 11 1122334443 345689999999999999999999999999999999999999987641 123478
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCccc
Q 010723 254 ALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVG 309 (502)
Q Consensus 254 ~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~ 309 (502)
+|+.|+++|++++..++.++..+. .+|.........+|+..++.+.+++
T Consensus 322 ~l~~Y~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~r~~~~~~~~~~p 370 (382)
T TIGR01984 322 LLQEYLRRRQFDQFITIGLTDGLN-------RLFSNHIPLLRALRNLGLLALENFP 370 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHcCCchHHHHHHHHHHHHHhcCH
Confidence 999999999999998888776643 3444555566788888877776655
No 31
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.96 E-value=1.1e-27 Score=256.08 Aligned_cols=243 Identities=16% Similarity=0.189 Sum_probs=158.5
Q ss_pred EEeeHHHHHHHHHhccCC----CeEecCCeEEEEEeeC---CeEEEEEc------cC--cEEEeeEEEEecCCCchhhcc
Q 010723 23 RVISRMTLQQILAKAVGD----EIILNESNVIDFKDHG---DKVSVVLE------NG--QCYAGDLLIGADGIWSKVRKN 87 (502)
Q Consensus 23 ~~i~R~~L~~~L~~~~~~----~~v~~~~~v~~i~~~~---~~v~v~~~------dg--~~~~adlvVgADG~~S~vR~~ 87 (502)
+.++|..++++|.+.+.. ..++++++++++++++ ..|+++++ +| ++++|||||||||++|.||++
T Consensus 136 ~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~ 215 (634)
T PRK08294 136 VIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKA 215 (634)
T ss_pred EeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHh
Confidence 689999999999997732 3578999999998764 34888886 35 589999999999999999999
Q ss_pred c-cCCCCCcccceEEEEEEecCCCCCccc--cceEEEecCceEEEEEeCCCCe-EEEEEEEcC-C-CCCCCCCcchHHHH
Q 010723 88 L-FGPQEAIYSGYTCYTGIADFVPADIES--VGYRVFLGHKQYFVSSDVGAGK-MQWYAFHKE-P-AGGVDGPEGKKERL 161 (502)
Q Consensus 88 l-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~l 161 (502)
+ ++.....+.....+..+... .+++. ....++..+++.++++|..++. +++++.... + .........+.+++
T Consensus 216 lgi~~~G~~~~~~~~v~dv~~~--~~~p~~~~~~~~~~~~~g~~~~~P~~~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l 293 (634)
T PRK08294 216 IGRELRGDSANHAWGVMDVLAV--TDFPDIRLKCAIQSASEGSILLIPREGGYLVRLYVDLGEVPPDERVAVRNTTVEEV 293 (634)
T ss_pred cCCCccCCcccceEEEEEEEEc--cCCCCcceEEEEecCCCceEEEEECCCCeEEEEEEecCcCCCccccccccCCHHHH
Confidence 9 44444444443222222111 11111 1112333455667777887774 444443221 1 11111123345556
Q ss_pred HHHhhCCChHHHHHHHcCCccceeeeecccC--CCCCc----------ccCCCEEEEcCCccccCCCchhhhhHHHHHHH
Q 010723 162 LKIFEGWCDNVVDLILATDEEAILRRDIYDR--TPIFT----------WGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGY 229 (502)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~----------~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~ 229 (502)
.+.+..+..+. ......+..+.++.. ..+.+ |..|||+|+|||||+++|.+|||||+||+||.
T Consensus 294 ~~~~~~~~~p~-----~~~~~~v~w~s~y~i~~r~a~~f~~~~~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~ 368 (634)
T PRK08294 294 IAKAQRILHPY-----TLDVKEVAWWSVYEVGQRLTDRFDDVPAEEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGF 368 (634)
T ss_pred HHHHHHhcCCC-----CCceeEEeEEecccccceehhhcccccccccccccCCEEEEecCccCCCCccccchhhHHHHHH
Confidence 55544322110 001111233333331 11222 34699999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 010723 230 QLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVM 279 (502)
Q Consensus 230 ~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~ 279 (502)
+|+|+|+.++++ ...+++|++|+++|+++++.++++++....+
T Consensus 369 nLawkLa~vl~g-------~a~~~lL~tYe~ERrp~a~~li~~~~~~~~l 411 (634)
T PRK08294 369 NLGWKLAAVLSG-------RSPPELLHTYSAERQAIAQELIDFDREWSTM 411 (634)
T ss_pred HHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998864 2447899999999999999998888764443
No 32
>PRK06184 hypothetical protein; Provisional
Probab=99.96 E-value=1.4e-27 Score=250.98 Aligned_cols=241 Identities=20% Similarity=0.268 Sum_probs=161.7
Q ss_pred CCCeEEEeeHHHHHHHHHhccCC--CeEecCCeEEEEEeeCCeEEEEE---ccCcEEEeeEEEEecCCCchhhccc-cCC
Q 010723 18 GLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVL---ENGQCYAGDLLIGADGIWSKVRKNL-FGP 91 (502)
Q Consensus 18 ~~p~~~~i~R~~L~~~L~~~~~~--~~v~~~~~v~~i~~~~~~v~v~~---~dg~~~~adlvVgADG~~S~vR~~l-~~~ 91 (502)
.++.+++++|..|+++|.+.+.. ++++++++|+++++++++|++++ .++++++||+||||||++|.||+.+ +..
T Consensus 99 ~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lgi~~ 178 (502)
T PRK06184 99 PYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSFVRKALGIGF 178 (502)
T ss_pred CCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchHHHHhCCCCc
Confidence 34567899999999999998743 67999999999999988998888 5567899999999999999999998 444
Q ss_pred CCCcccceEEEEEEecCCCCCccccceEEEecCc-eEEEEEeCCCCe-EEEEEEEcCCCCCCCCCcchHHHHHHHhhCCC
Q 010723 92 QEAIYSGYTCYTGIADFVPADIESVGYRVFLGHK-QYFVSSDVGAGK-MQWYAFHKEPAGGVDGPEGKKERLLKIFEGWC 169 (502)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 169 (502)
....+.....+...... + ......+..|..+. ..+.++|+.++. +.+++.... .. ......+.+.+.+..+.
T Consensus 179 ~g~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~l~~~~ 252 (502)
T PRK06184 179 PGETLGIDRMLVADVSL-T-GLDRDAWHQWPDGDMGMIALCPLPGTDLFQIQAPLPP--GG--EPDLSADGLTALLAERT 252 (502)
T ss_pred ccCcCCCceEEEEEEEe-e-cCCCcceEEccCCCCcEEEEEEccCCCeEEEEEEcCC--Cc--cCCCCHHHHHHHHHHhc
Confidence 44444331122222211 1 11223344444443 566677876553 333332221 11 11223445555544432
Q ss_pred hHHHHHHHcCCccceeeeeccc--CCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCC
Q 010723 170 DNVVDLILATDEEAILRRDIYD--RTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKT 247 (502)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~ 247 (502)
.... + ....+.....+. ...+.+|.+|||+|+|||||.|+|++|||||+||+||.+|+|+|+.++++
T Consensus 253 ~~~~--~---~~~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g------ 321 (502)
T PRK06184 253 GRTD--I---RLHSVTWASAFRMNARLADRYRVGRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLAG------ 321 (502)
T ss_pred CCCC--c---ceeeeeeeeccccceeEhhhhcCCcEEEeccccccCCCcccccccchHHHHHHHHHHHHHHHcC------
Confidence 2100 0 000111111221 12346899999999999999999999999999999999999999988753
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 010723 248 PIDIVSALKSYERARRLRVAVIHGLARSAA 277 (502)
Q Consensus 248 ~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~ 277 (502)
..+.+|++|+++|+++++.++..+....
T Consensus 322 --~~~~lL~~Ye~eR~p~~~~~~~~s~~~~ 349 (502)
T PRK06184 322 --APEALLDTYEEERRPVAAAVLGLSTELL 349 (502)
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2367999999999999999988877644
No 33
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.96 E-value=8.1e-28 Score=245.29 Aligned_cols=272 Identities=15% Similarity=0.082 Sum_probs=164.3
Q ss_pred CeEEEeeHHHHHHHHHhccC--CCeEecCCeEEEEEe-eCCeEEEEE-ccCc--EEEeeEEEEecCCCchhhccccCCCC
Q 010723 20 PVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKD-HGDKVSVVL-ENGQ--CYAGDLLIGADGIWSKVRKNLFGPQE 93 (502)
Q Consensus 20 p~~~~i~R~~L~~~L~~~~~--~~~v~~~~~v~~i~~-~~~~v~v~~-~dg~--~~~adlvVgADG~~S~vR~~l~~~~~ 93 (502)
+..+.++|..|.+.|++.+. .+.++++++++++++ +++.+.|++ .+|+ +++||+||||||++|.||+.+.....
T Consensus 95 ~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~vR~~~~~~~~ 174 (392)
T PRK08243 95 RAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGVSRASIPAGAL 174 (392)
T ss_pred ceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCCchhhhcCcchh
Confidence 34556788899888887653 367999999999987 667778888 4674 68999999999999999999843222
Q ss_pred Ccccce--EEEEEEecCCCCCccccceEEEecCceEEEEEeCCCCeEEEEEEEcCCCCCCC-CCcchHHHHHHHhhCCCh
Q 010723 94 AIYSGY--TCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVD-GPEGKKERLLKIFEGWCD 170 (502)
Q Consensus 94 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 170 (502)
..|... ..|.+.....+.. .....+...+..+.++++.+++...+++.......... ......+.+.+.+..+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 251 (392)
T PRK08243 175 RTFERVYPFGWLGILAEAPPV--SDELIYANHERGFALCSMRSPTRSRYYLQCPLDDKVEDWSDERFWDELRRRLPPED- 251 (392)
T ss_pred hceecccCceEEEEeCCCCCC--CCceEEeeCCCceEEEecCCCCcEEEEEEecCCCCcccCChhHHHHHHHHhcCccc-
Confidence 223322 3444443222211 11122222334444554444444444443332111111 11122233444333310
Q ss_pred HHHHHHHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCChhh
Q 010723 171 NVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPID 250 (502)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~ 250 (502)
...+..........+++. ...+.+|+.|||+|||||||.|+|++|||+|+||+||.+|+++|.+++++ +
T Consensus 252 --~~~~~~~~~~~~~~~~~~-~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~--------~ 320 (392)
T PRK08243 252 --AERLVTGPSIEKSIAPLR-SFVAEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFYRE--------G 320 (392)
T ss_pred --ccccccCccccccceeee-eceeccceeCCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHHHHhcc--------C
Confidence 000001110000111111 13346889999999999999999999999999999999999999987643 2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCccc
Q 010723 251 IVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVG 309 (502)
Q Consensus 251 ~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~ 309 (502)
.+++|+.|+++|++++..++.++..+..+.... .....+...+|+..|..+..++
T Consensus 321 ~~~~L~~Ye~~r~~r~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 375 (392)
T PRK08243 321 DTALLDAYSATALRRVWKAERFSWWMTSMLHRF----PDDDPFDQRIQLAELDYLTSSR 375 (392)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCCChHHHHHHHHHHHHHhcCH
Confidence 368999999999999999998887765543211 1122334456666665554444
No 34
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.96 E-value=4.4e-28 Score=247.01 Aligned_cols=269 Identities=21% Similarity=0.231 Sum_probs=178.7
Q ss_pred CeEEEeeHHHHHHHHHhccCC---CeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhhcccc-CCCCCc
Q 010723 20 PVTRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLF-GPQEAI 95 (502)
Q Consensus 20 p~~~~i~R~~L~~~L~~~~~~---~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~-~~~~~~ 95 (502)
..++.++|..|++.|.+.+.. +.++++++|++++.+++++++++++|+++++|+||+|||.+|.+|+.+. ......
T Consensus 98 ~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S~vr~~l~~~~~~~~ 177 (385)
T TIGR01988 98 ALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANSKVRQLAGIPTTGWD 177 (385)
T ss_pred ccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCCHHHHHcCCCccccc
Confidence 358999999999999998743 6799999999999888899999999999999999999999999999983 333444
Q ss_pred ccceEEEEEEecCCCCCccccceEEEecCceEEEEEeCCCCeEEEEEEEcCCCCC---CCCCcchHHHHHHHhhCCChHH
Q 010723 96 YSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGG---VDGPEGKKERLLKIFEGWCDNV 172 (502)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~ 172 (502)
|.. .++...... +.......+. ++.+++.++.+|.+++..++++........ ...++...+.+.+.+..+.+.
T Consensus 178 ~~~-~~~~~~~~~-~~~~~~~~~~-~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 253 (385)
T TIGR01988 178 YGQ-SAVVANVKH-ERPHQGTAWE-RFTPTGPLALLPLPDNRSSLVWTLPPEEAERLLALSDEEFLAELQRAFGSRLGA- 253 (385)
T ss_pred cCC-eEEEEEEEe-cCCCCCEEEE-EecCCCCEEEeECCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhcCc-
Confidence 443 333333221 1111122222 333445566778888876665543221000 001111222233322222110
Q ss_pred HHHHHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHH
Q 010723 173 VDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIV 252 (502)
Q Consensus 173 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~ 252 (502)
+... ..+..+++.. ...++|..+||+|+|||||.|+|++|||+|+||+||..|+++|..++..+ .+....
T Consensus 254 ---~~~~--~~~~~~~~~~-~~~~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~~~----~~~~~~ 323 (385)
T TIGR01988 254 ---ITLV--GERHAFPLSL-THAKRYVAPRLALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRG----EDIGSP 323 (385)
T ss_pred ---eEec--cCcceeechh-hhhhheecCceEEEecccccCCccccchhhhhHHHHHHHHHHHHHHHhcC----CCCCcH
Confidence 0011 1122233333 34568999999999999999999999999999999999999999876432 012347
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCccc
Q 010723 253 SALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVG 309 (502)
Q Consensus 253 ~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~ 309 (502)
.+|+.|+++|++++..++.+++.... +|.........+|+..++.+..++
T Consensus 324 ~~l~~y~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~r~~~~~~~~~~~ 373 (385)
T TIGR01988 324 RVLQRYERRRRFDNAAMLGATDGLNR-------LFSNDFPPLRLLRNLGLRLLNLLP 373 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHcCCCcHHHHHHHHHHHHHhhCH
Confidence 89999999999999998888776443 344455566777887776665444
No 35
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.96 E-value=3.7e-28 Score=247.88 Aligned_cols=278 Identities=17% Similarity=0.146 Sum_probs=183.1
Q ss_pred eEEEeeHHHHHHHHHhccCC---CeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhhcccc-CCCCCcc
Q 010723 21 VTRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLF-GPQEAIY 96 (502)
Q Consensus 21 ~~~~i~R~~L~~~L~~~~~~---~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~-~~~~~~~ 96 (502)
..+.++|..|++.|.+++.. +.++ +++|++++.+++++.|++.+|++++||+||+|||++|.+|+.+. ......|
T Consensus 104 ~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S~vr~~~~~~~~~~~~ 182 (388)
T PRK07608 104 LAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHSWVRSQAGIKAERRPY 182 (388)
T ss_pred CEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCchHHHhcCCCcccccc
Confidence 46889999999999987742 5566 89999999888899999999989999999999999999999883 3333334
Q ss_pred cceEEEEEEecCCCCCccccceEEEecCceEEEEEeCCCCeEEEEEEEcCCCCCCCCCcchHHHHHHHhhCCChHHHHHH
Q 010723 97 SGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLI 176 (502)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 176 (502)
.+ .++...+.. +..... ....|+.++.+++++|++++.+.+++....... ........+++.+.+..+.+.....+
T Consensus 183 ~~-~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (388)
T PRK07608 183 RQ-TGVVANFKA-ERPHRG-TAYQWFRDDGILALLPLPDGHVSMVWSARTAHA-DELLALSPEALAARVERASGGRLGRL 258 (388)
T ss_pred CC-EEEEEEEEe-cCCCCC-EEEEEecCCCCEEEeECCCCCeEEEEECCHHHH-HHHHCCCHHHHHHHHHHHHHHhcCCc
Confidence 43 223222221 111111 123455666777788998887655443321100 00000112334443333221100001
Q ss_pred HcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHHHH
Q 010723 177 LATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALK 256 (502)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~ 256 (502)
..... ...+++.. ...+.|+.+||+|||||||+|+|++|||+|+||+||.+|+++|......+ .....++|+
T Consensus 259 ~~~~~--~~~~~~~~-~~~~~~~~~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~~~~~-----~~~~~~~l~ 330 (388)
T PRK07608 259 ECVTP--AAGFPLRL-QRVDRLVAPRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFR-----DLGDLRLLR 330 (388)
T ss_pred eecCC--cceeecch-hhhhhhhcCceEEEeccccccCCccccccchhHHHHHHHHHHHHHhhccC-----CCccHHHHH
Confidence 11111 11123322 33568999999999999999999999999999999999999998764211 112347999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCcccc--eeeeeccc
Q 010723 257 SYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGG--RFFIDLAM 318 (502)
Q Consensus 257 ~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~--~~~~~~~~ 318 (502)
+|+++|++++..++..++.+ ..+|.++..+...+|+..+..+..++. ++++++++
T Consensus 331 ~Ye~~R~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 387 (388)
T PRK07608 331 RYERARREDILALQVATDGL-------QRLFALPGPLARWLRNAGMALVGALPLVKRWLVRHAL 387 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHcCCchHHHHHHHHHHHHHhhChHHHHHHHHHhc
Confidence 99999999999888777653 335666667788899999888877663 55555544
No 36
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.96 E-value=2.3e-27 Score=251.93 Aligned_cols=265 Identities=17% Similarity=0.155 Sum_probs=167.0
Q ss_pred CCeEEEeeHHHHHHHHHhccC---CCeEecCCeEEEEEeeCCeEEEEEc--cCc-EEEeeEEEEecCCCchhhccc-cCC
Q 010723 19 LPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLE--NGQ-CYAGDLLIGADGIWSKVRKNL-FGP 91 (502)
Q Consensus 19 ~p~~~~i~R~~L~~~L~~~~~---~~~v~~~~~v~~i~~~~~~v~v~~~--dg~-~~~adlvVgADG~~S~vR~~l-~~~ 91 (502)
+|..+.++|..|+++|.+.+. .+.++++++|++++++++++++++. +|+ +++||+||||||.+|.||+.+ +..
T Consensus 116 ~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg~~~ 195 (547)
T PRK08132 116 RPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSPLREMLGLEF 195 (547)
T ss_pred CCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcHHHHHcCCCC
Confidence 455667999999999998763 3679999999999998888887764 454 699999999999999999988 344
Q ss_pred CCCcccceEEEEEEecCCCCCccccceEEEe---cCceEEEEEeCCCCeEEEEEEEcCCCCCCCCCcchHHHHHHHhhCC
Q 010723 92 QEAIYSGYTCYTGIADFVPADIESVGYRVFL---GHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGW 168 (502)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 168 (502)
....|.....+.... ...+.....+..+. .++..+++.+.+++...+.+....... .. .....+.+.+
T Consensus 196 ~g~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~----- 266 (547)
T PRK08132 196 EGRTFEDRFLIADVK--MKADFPTERWFWFDPPFHPGQSVLLHRQPDNVWRIDFQLGWDAD-PE-AEKKPENVIP----- 266 (547)
T ss_pred CCccccceEEEEEEE--ecCCCCCeeeEEEeccCCCCcEEEEEeCCCCeEEEEEecCCCCC-ch-hhcCHHHHHH-----
Confidence 444444322222111 11112121222221 234455555655554433332221110 00 0011222222
Q ss_pred ChHHHHHHHcCCccceeeeecc--cCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCC
Q 010723 169 CDNVVDLILATDEEAILRRDIY--DRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESK 246 (502)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~ 246 (502)
.+.+++.......+.....+ ....+.+|++|||+|+|||||.|+|++|||||+||+||.+|+|+|+.++++
T Consensus 267 --~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g----- 339 (547)
T PRK08132 267 --RVRALLGEDVPFELEWVSVYTFQCRRMDRFRHGRVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRG----- 339 (547)
T ss_pred --HHHHHcCCCCCeeEEEEEeeeeeeeeecccccccEEEEecccccCCCcccccccchHHHHHHHHHHHHHHHcC-----
Confidence 22233321111112222222 224567899999999999999999999999999999999999999998764
Q ss_pred ChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCcc
Q 010723 247 TPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRV 308 (502)
Q Consensus 247 ~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~ 308 (502)
...+.+|++|+++|+++++.++..+.....+ +....+....+|+..+......
T Consensus 340 --~~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~-------~~~~~~~~~~~r~~~~~~~~~~ 392 (547)
T PRK08132 340 --RAPDSLLDSYASEREFAADENIRNSTRSTDF-------ITPKSPVSRLFRDAVLRLARDH 392 (547)
T ss_pred --CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hCCCCHHHHHHHHHHHhhhccc
Confidence 2347899999999999999888777654332 2333344456677666555443
No 37
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.96 E-value=7.3e-28 Score=242.24 Aligned_cols=245 Identities=28% Similarity=0.252 Sum_probs=152.8
Q ss_pred cCCCeEEEeeHHHHHHHHHhccC--CCeEecCCeEEEEEeeCCeEEEEEccC-----cEEEeeEEEEecCCCchhhcccc
Q 010723 17 KGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENG-----QCYAGDLLIGADGIWSKVRKNLF 89 (502)
Q Consensus 17 ~~~p~~~~i~R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~v~~~dg-----~~~~adlvVgADG~~S~vR~~l~ 89 (502)
...+..++++|..|++.|.+.+. .+.+++++++++++++.+++++.+.++ ++++||+||||||++|+||+.+.
T Consensus 100 ~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~ 179 (356)
T PF01494_consen 100 TKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLG 179 (356)
T ss_dssp SGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTT
T ss_pred ccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccchhhhcc
Confidence 44567899999999999999863 267999999999999999887776554 27999999999999999999983
Q ss_pred CC-CCCcccceEEEEEEecCCCCC-ccccceEEEecCceEEEEEeCCC-CeEEEEEEEcCCCCCC-CCCcchHHHHHHHh
Q 010723 90 GP-QEAIYSGYTCYTGIADFVPAD-IESVGYRVFLGHKQYFVSSDVGA-GKMQWYAFHKEPAGGV-DGPEGKKERLLKIF 165 (502)
Q Consensus 90 ~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~ 165 (502)
.. ....+.....+..+....... .....+.+...+...+..+|..+ +...+++.+....... .......+.+.+.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (356)
T PF01494_consen 180 IDRPGPDTVYRWGWFGIVFDSDLSDPWEDHCFIYSPPSGGFAIIPLENGDRSRFVWFLPFDESKEERPEEFSPEELFANL 259 (356)
T ss_dssp GGEEEEEEEEEEEEEEEEEECHSHTTTSCEEEEEEETTEEEEEEEETTTTEEEEEEEEETTTTTCCSTHCHHHHHHHHHH
T ss_pred ccccCccccccccccccccccccccccccccccccccccceeEeeccCCccceEEEeeeccccccccccccccccccccc
Confidence 22 111111112222222111111 11112333344555556677776 4444444333322111 11122233333332
Q ss_pred hCCChHHHHHHHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCC
Q 010723 166 EGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNES 245 (502)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~ 245 (502)
.. .+..............+++.. ....+|.+|||+|||||||+|+|++|||+|+||+||..|+++|..++++
T Consensus 260 ~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~~g---- 331 (356)
T PF01494_consen 260 PE---IFGPDLLETEIDEISAWPIPQ-RVADRWVKGRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAALKG---- 331 (356)
T ss_dssp HH---HHHTCHHHHEEEEEEEEEEEE-EEESSSEETTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHHTT----
T ss_pred cc---ccccccccccccccccccccc-ccccccccceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHhcC----
Confidence 22 111100011111223333332 3456899999999999999999999999999999999999999998764
Q ss_pred CChhhHHHHHHHHHHHhHHHHHHHHHH
Q 010723 246 KTPIDIVSALKSYERARRLRVAVIHGL 272 (502)
Q Consensus 246 ~~~~~~~~~L~~Y~~~R~~~~~~~~~~ 272 (502)
...+++|+.|+++|++++..++++
T Consensus 332 ---~~~~~~l~~Y~~~r~~~~~~~~~~ 355 (356)
T PF01494_consen 332 ---EASEEALKAYEQERRPRARKAVQF 355 (356)
T ss_dssp ---SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CcHHHHHHHHHHHHHHHHHHHHhC
Confidence 345789999999999999987654
No 38
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.95 E-value=1.2e-27 Score=230.63 Aligned_cols=241 Identities=35% Similarity=0.451 Sum_probs=167.2
Q ss_pred EEEeeHHHHHHHHHhccCCCeEecCC------eEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhhccccCCCCCc
Q 010723 22 TRVISRMTLQQILAKAVGDEIILNES------NVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAI 95 (502)
Q Consensus 22 ~~~i~R~~L~~~L~~~~~~~~v~~~~------~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~ 95 (502)
..++.|..++.+|.++++...++++. ....++.......+.+.||.++++|++|||||++|.||+.++... +.
T Consensus 97 ~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~~~~~~~v~l~~g~~~~~dlligCDGa~S~Vr~~l~~~~-p~ 175 (420)
T KOG2614|consen 97 LRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIETLGKKLVVHLSDGTTVKGDLLIGCDGAYSKVRKWLGFKE-PR 175 (420)
T ss_pred HHHHHHHHHHHHHHhhcCCCeeecccccccccccceeeecccccceecCCCcEEEeeEEEEcCchHHHHHHHhcccC-Cc
Confidence 44678888888888888876677764 455555556667789999999999999999999999999995443 88
Q ss_pred ccceEEEEEEecCCCCCccccceEEEecCceEEEEEeCCCCeEEEEEEEcCCCC-----CCCCCcchHHHHHHHhhCCCh
Q 010723 96 YSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAG-----GVDGPEGKKERLLKIFEGWCD 170 (502)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~ 170 (502)
|.++.+|++.. +.|...+. ....|...+..+...|.+.....++++...+.. ..+.++.......+.+..|+.
T Consensus 176 ~~~~~ayrg~~-~~~~~~~~-~~~vf~~~~~~~~~~~~~~~~~~~y~~~~k~~t~t~~~~~~e~~~l~~~~~~v~~~~~e 253 (420)
T KOG2614|consen 176 YDGSQAYRGLG-FIPNGIPF-GKKVFAIYGNGLHSWPRPGFHLIAYWFLDKSLTSTDFAPFDEPEKLKKTSLEVVDFFPE 253 (420)
T ss_pred ceeEEEEeeee-eccCCCCc-ccceecccCCeEEEcccCCceEEEEEeecCCcccccccCcCCHHHHhhhHHHHHHHhHH
Confidence 99999999876 33433332 223344455555555666666666666543322 112233334445666777888
Q ss_pred HHHHHHHcCCccceeeeecccCCCCC----cccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCC
Q 010723 171 NVVDLILATDEEAILRRDIYDRTPIF----TWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESK 246 (502)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~ 246 (502)
.+.+++.....+.+...++..+.+.+ ....++|+|+|||||+|.|+.|||+|+||+|+.+|+++|.++.+.-+..+
T Consensus 254 n~~d~i~~~~~e~i~~t~l~~r~p~~~i~~~~s~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~d~s~~~ 333 (420)
T KOG2614|consen 254 NFPDIIELTGEESIVRTPLADRPPWPLISVKCSPGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAINDVSLAG 333 (420)
T ss_pred hHHHHHHhcChHHhhhchhhhcCCcCeeeeccCCCeEEEecccccccCCcccccccchHHHHHHHHHHHHHhccchhccc
Confidence 88888888877776666566654432 33457899999999999999999999999999999999999865211111
Q ss_pred Chhh--------HHHHHHHHHHHhHHH
Q 010723 247 TPID--------IVSALKSYERARRLR 265 (502)
Q Consensus 247 ~~~~--------~~~~L~~Y~~~R~~~ 265 (502)
.... .+.++..|..+|..+
T Consensus 334 ~~~s~~~e~~~~ie~a~~~Y~~~r~~r 360 (420)
T KOG2614|consen 334 EEYSRENESHAIIELAMYSYKEERWRR 360 (420)
T ss_pred cceecccchhHHHHHHHHHHHHHHHHH
Confidence 1111 456667777776443
No 39
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.95 E-value=4.7e-27 Score=239.09 Aligned_cols=242 Identities=16% Similarity=0.166 Sum_probs=154.1
Q ss_pred EeeHHHHHHHHHhccC--CCeEecCCeEEEEEe-eCCeEEEEEc-cCc--EEEeeEEEEecCCCchhhccccCCCCCccc
Q 010723 24 VISRMTLQQILAKAVG--DEIILNESNVIDFKD-HGDKVSVVLE-NGQ--CYAGDLLIGADGIWSKVRKNLFGPQEAIYS 97 (502)
Q Consensus 24 ~i~R~~L~~~L~~~~~--~~~v~~~~~v~~i~~-~~~~v~v~~~-dg~--~~~adlvVgADG~~S~vR~~l~~~~~~~~~ 97 (502)
...+..|.+.|.+++. ...++++++++.+.. +++.+.|++. +|+ +++||+||||||+||.||+++.......|.
T Consensus 99 ~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S~VR~~l~~~~~~~~~ 178 (390)
T TIGR02360 99 VYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHGVSRASIPAEVLKEFE 178 (390)
T ss_pred EeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCchhhHHhcCcccceeee
Confidence 4567888899988763 256788888888765 5567778886 775 689999999999999999998443333344
Q ss_pred ce--EEEEEEecCCCCCccccceEEEecCceEEEEEeCCCC-eEEEEEEEcCCCCCCCC-CcchHHHHHHHhhCCChHHH
Q 010723 98 GY--TCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAG-KMQWYAFHKEPAGGVDG-PEGKKERLLKIFEGWCDNVV 173 (502)
Q Consensus 98 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 173 (502)
+. ..|.++....+.. ... ..+.+.+..+.++++.++ ...|++........... .+...+.+.+.+ .+.+.
T Consensus 179 ~~~~~~~~~l~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~ 252 (390)
T TIGR02360 179 RVYPFGWLGILSETPPV--SHE-LIYSNHERGFALCSMRSATRSRYYVQVPLTDKVEDWSDDRFWAELKRRL---PSEAA 252 (390)
T ss_pred ccCCcceEEEecCCCCC--CCc-eEEEeCCCceEEEeccCCCcceEEEEcCCCCChhhCChhHHHHHHHHhc---Cchhh
Confidence 32 2455544322211 111 234444444555565432 22354443321111110 111223333333 23444
Q ss_pred HHHHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHHH
Q 010723 174 DLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVS 253 (502)
Q Consensus 174 ~~~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~ 253 (502)
+.+...+.......++. .....+|+.|||+|||||||.|+|+.|||+|+||+||.+|+++|..... .+...
T Consensus 253 ~~~~~~~~~~~~~~~l~-~~~~~~~~~grvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~~~~--------~~~~~ 323 (390)
T TIGR02360 253 ERLVTGPSIEKSIAPLR-SFVCEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLEHYQ--------EGSSA 323 (390)
T ss_pred hhhccCCccceeeeeHH-hhccccCccCCEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHHHHhc--------cChHH
Confidence 44333222111111222 2345679999999999999999999999999999999999999987532 23578
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 010723 254 ALKSYERARRLRVAVIHGLARSAAVMA 280 (502)
Q Consensus 254 ~L~~Y~~~R~~~~~~~~~~s~~~~~~~ 280 (502)
+|+.|++.|++++..+++.|+.++.+.
T Consensus 324 al~~Y~~~R~~r~~~~~~~s~~~~~~~ 350 (390)
T TIGR02360 324 GIEGYSARALARVWKAERFSWWMTSLL 350 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998866553
No 40
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.95 E-value=1.1e-27 Score=244.97 Aligned_cols=277 Identities=16% Similarity=0.182 Sum_probs=180.6
Q ss_pred eEEEeeHHHHHHHHHhccC---CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhhcccc-CCCCCcc
Q 010723 21 VTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLF-GPQEAIY 96 (502)
Q Consensus 21 ~~~~i~R~~L~~~L~~~~~---~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~-~~~~~~~ 96 (502)
.++.++|..|++.|.+.+. .++++++++|++++.+++++.+++++|.++++|+||+|||.+|.||+.+. ......+
T Consensus 105 ~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~~~~~~~~~~ 184 (395)
T PRK05732 105 LGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSALREALGIDWQQHPY 184 (395)
T ss_pred cEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChhhHHhhCCCccceec
Confidence 4789999999999998763 36789999999999888889999999989999999999999999999883 3222333
Q ss_pred cceEEEEEEecCCCCCccccceEEEecCceEEEEEeCCCCeEEEEEEEcCCCCC---CCCCcchHHHHHHHhhCCChHHH
Q 010723 97 SGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGG---VDGPEGKKERLLKIFEGWCDNVV 173 (502)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~ 173 (502)
+..++...+... .......+..+. .++.++++|.+++...+++..+..... ........+.+.+.+. | .+.
T Consensus 185 -~~~~~~~~~~~~-~~~~~~~~~~~~-~~g~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~ 258 (395)
T PRK05732 185 -EQVAVIANVTTS-EAHQGRAFERFT-EHGPLALLPMSDGRCSLVWCHPLEDAEEVLSWSDAQFLAELQQAFG-W--RLG 258 (395)
T ss_pred -CCEEEEEEEEec-CCCCCEEEEeec-CCCCEEEeECCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHH-h--hhc
Confidence 334444333211 111122223333 334456678888876655543211000 0000111122222221 1 111
Q ss_pred HHHHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHHH
Q 010723 174 DLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVS 253 (502)
Q Consensus 174 ~~~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~ 253 (502)
.+. ... ....+++.. ....+|..|||+|+|||||.++|++|||+|+||+||..|+++|..++... .+.....
T Consensus 259 ~~~-~~~--~~~~~~l~~-~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~----~~~~~~~ 330 (395)
T PRK05732 259 RIT-HAG--KRSAYPLAL-VTAAQQISHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARG----EDIGDYA 330 (395)
T ss_pred cee-ecC--Ccceecccc-cchhhhccCcEEEEeecccccCCccccccchHHHHHHHHHHHHHHHHhcC----CCCCCHH
Confidence 110 110 112223322 24468999999999999999999999999999999999999998876532 1122358
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCcccc--eeeeeccc
Q 010723 254 ALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGG--RFFIDLAM 318 (502)
Q Consensus 254 ~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~--~~~~~~~~ 318 (502)
+|+.|+++|++++..++.+++.+. .+|..+..+...+|+..+..+..++. ++++++++
T Consensus 331 ~l~~Y~~~R~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 390 (395)
T PRK05732 331 VLQRYQQRRQQDREATIGFTDGLV-------RLFANRWAPLVVGRNLGLMAMDLLPPARDWLARRTL 390 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHcCCChHHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999988877776533 34555666778889999888877663 55554443
No 41
>PRK07190 hypothetical protein; Provisional
Probab=99.95 E-value=9.1e-27 Score=242.18 Aligned_cols=238 Identities=16% Similarity=0.141 Sum_probs=157.4
Q ss_pred CCeEEEeeHHHHHHHHHhccC--CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhhccc-cCCCCCc
Q 010723 19 LPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL-FGPQEAI 95 (502)
Q Consensus 19 ~p~~~~i~R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l-~~~~~~~ 95 (502)
.+..+.+.|..++++|.+++. .+.++++++|++++++++++++++.+|++++|++||||||.+|.||+.+ ++.....
T Consensus 100 ~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S~vR~~lgi~f~g~~ 179 (487)
T PRK07190 100 HKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRSFVRNHFNVPFEIIR 179 (487)
T ss_pred CCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCHHHHHHcCCCccccc
Confidence 345688999999999998764 3679999999999999999998888888999999999999999999998 4444333
Q ss_pred ccceEEEE-EEecCCCCCccc-cceEEEecCceEEEEEeCCCCeEEEEEEEcCCCCCCCCCcchHHHHHHHhhC-CChHH
Q 010723 96 YSGYTCYT-GIADFVPADIES-VGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEG-WCDNV 172 (502)
Q Consensus 96 ~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 172 (502)
+....... ..+. .+.+. .....+..+.+.++.+|..++...++..... .....+++.+.+.. ..+..
T Consensus 180 ~~~~~~~~d~~~~---~~~~~~~~~~~~~~~~g~~~~~p~~~~~~r~~~~~~~-------~~~t~~~~~~~l~~~~~~~~ 249 (487)
T PRK07190 180 PQIIWAVIDGVID---TDFPKVPEIIVFQAETSDVAWIPREGEIDRFYVRMDT-------KDFTLEQAIAKINHAMQPHR 249 (487)
T ss_pred cceeEEEEEEEEc---cCCCCCcceEEEEcCCCCEEEEECCCCEEEEEEEcCC-------CCCCHHHHHHHHHHhcCCCC
Confidence 33211211 1221 11111 1112233334445556776665544332211 11122333332222 11110
Q ss_pred HHHHHcCCccceeeeecccCCCCCccc-CCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCChhhH
Q 010723 173 VDLILATDEEAILRRDIYDRTPIFTWG-RGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDI 251 (502)
Q Consensus 173 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~ 251 (502)
+..........+++.. ..+.+|. +|||+|+|||||.++|++|||||+||+||.+|+|+|+.++++. ..
T Consensus 250 ---~~~~~~~w~s~~~~~~-r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~g~-------a~ 318 (487)
T PRK07190 250 ---LGFKEIVWFSQFSVKE-SVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHHG-------AS 318 (487)
T ss_pred ---CceEEEEEEEEeeeCc-EehhhcCcCCcEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcCC-------Cc
Confidence 0000111112223332 4457886 7999999999999999999999999999999999999887752 34
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Q 010723 252 VSALKSYERARRLRVAVIHGLARSAA 277 (502)
Q Consensus 252 ~~~L~~Y~~~R~~~~~~~~~~s~~~~ 277 (502)
+.+|++|+++|++.++.++..++.+.
T Consensus 319 ~~lLdtY~~eR~p~a~~vl~~t~~~~ 344 (487)
T PRK07190 319 PELLQSYEAERKPVAQGVIETSGELV 344 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999998887776543
No 42
>PRK06126 hypothetical protein; Provisional
Probab=99.95 E-value=2.4e-26 Score=244.33 Aligned_cols=238 Identities=21% Similarity=0.225 Sum_probs=152.9
Q ss_pred EEEeeHHHHHHHHHhccC---CCeEecCCeEEEEEeeCCeEEEEEcc---Cc--EEEeeEEEEecCCCchhhccc-cCCC
Q 010723 22 TRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLEN---GQ--CYAGDLLIGADGIWSKVRKNL-FGPQ 92 (502)
Q Consensus 22 ~~~i~R~~L~~~L~~~~~---~~~v~~~~~v~~i~~~~~~v~v~~~d---g~--~~~adlvVgADG~~S~vR~~l-~~~~ 92 (502)
++.++|..|+++|.+.+. ++.++++++|++++++++++++++.+ |+ ++++|+||||||++|.||+.+ +...
T Consensus 120 ~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~ 199 (545)
T PRK06126 120 PHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYE 199 (545)
T ss_pred cccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcchHHHHhcCCccc
Confidence 678999999999998763 46899999999999988888887754 54 689999999999999999998 3333
Q ss_pred CCcccceEEEEEEecC--CCCCc-cccc-eEEEecCceEEEEEeCCCCeEEEEEE-EcCCCCCCCCCcchHHHHHHHhhC
Q 010723 93 EAIYSGYTCYTGIADF--VPADI-ESVG-YRVFLGHKQYFVSSDVGAGKMQWYAF-HKEPAGGVDGPEGKKERLLKIFEG 167 (502)
Q Consensus 93 ~~~~~~~~~~~~~~~~--~~~~~-~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 167 (502)
...+.+.. +...+.. ..... .... ..++.+++...++.+..+.. .|.+. ........ ....+.+.+.+..
T Consensus 200 g~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 274 (545)
T PRK06126 200 GTSGLQRD-LSIYIRAPGLAALVGHDPAWMYWLFNPDRRGVLVAIDGRD-EWLFHQLRGGEDEF---TIDDVDARAFVRR 274 (545)
T ss_pred cCCCcceE-EEEEEEcCchHHHhcCCCceEEEEECCCccEEEEEECCCC-eEEEEEecCCCCCC---CCCHHHHHHHHHH
Confidence 33333322 1111111 11111 1112 23344555554555554443 34333 22111111 1112223322222
Q ss_pred CC-hHHHHHHHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCC
Q 010723 168 WC-DNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESK 246 (502)
Q Consensus 168 ~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~ 246 (502)
.. ..+.. .......|. .....+.+|++|||+|+|||||.|+|++|||+|+||+||.+|+|+|+.++++
T Consensus 275 ~~~~~~~~-----~i~~~~~w~-~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~----- 343 (545)
T PRK06126 275 GVGEDIDY-----EVLSVVPWT-GRRLVADSYRRGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNG----- 343 (545)
T ss_pred hcCCCCCe-----EEEeecccc-hhheehhhhccCCEEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHcC-----
Confidence 11 11000 000111122 2234567899999999999999999999999999999999999999987653
Q ss_pred ChhhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 010723 247 TPIDIVSALKSYERARRLRVAVIHGLARSAA 277 (502)
Q Consensus 247 ~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~ 277 (502)
...+.+|+.|+++|++++..++..+....
T Consensus 344 --~~~~~lL~~Y~~eR~p~~~~~~~~s~~~~ 372 (545)
T PRK06126 344 --WAGPALLDSYEAERRPIAARNTDYARRNA 372 (545)
T ss_pred --CCcHHHHhhhHHHhhHHHHHHHHHHHHHH
Confidence 23468999999999999999998887543
No 43
>PLN02985 squalene monooxygenase
Probab=99.95 E-value=8.2e-26 Score=235.87 Aligned_cols=245 Identities=14% Similarity=0.152 Sum_probs=158.1
Q ss_pred CeEEEeeHHHHHHHHHhccC---CCeEecCCeEEEEEeeCCe---EEEEEccCc--EEEeeEEEEecCCCchhhccccCC
Q 010723 20 PVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDK---VSVVLENGQ--CYAGDLLIGADGIWSKVRKNLFGP 91 (502)
Q Consensus 20 p~~~~i~R~~L~~~L~~~~~---~~~v~~~~~v~~i~~~~~~---v~v~~~dg~--~~~adlvVgADG~~S~vR~~l~~~ 91 (502)
+.+++++|.+|.+.|++++. +++++.+ +++++..+++. |++..++|+ +++||+||||||.+|.+|+.+...
T Consensus 139 ~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~vR~~l~~~ 217 (514)
T PLN02985 139 PSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLNDN 217 (514)
T ss_pred cceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEcCCCCEEEEECCEEEECCCCchHHHHHhccC
Confidence 45789999999999998763 4556654 67777655543 444445675 467999999999999999999543
Q ss_pred CCCcccceEEEEEEecCCCCCccccceEEEecCceEEEEEeCCCCeEEEEEEEcCCCCCCCCCcchHHHHHHHhhC----
Q 010723 92 QEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEG---- 167 (502)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 167 (502)
....+.....+.. .. ... ......+.+++.+..++++|++++...+++..+.... +.....++.+.+.+
T Consensus 218 ~~~~~s~~~~~~~-~~-~~~-~~~~~~~~~~~~~~~~l~ypi~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~p 290 (514)
T PLN02985 218 NAEVLSYQVGYIS-KN-CRL-EEPEKLHLIMSKPSFTMLYQISSTDVRCVFEVLPDNI----PSIANGEMSTFVKNTIAP 290 (514)
T ss_pred CCcceeEeEEEEE-cc-ccC-CCCCcceEEcCCCceEEEEEeCCCeEEEEEEEeCCCC----CCcChhhHHHHHHhcccc
Confidence 3333333333321 11 111 1122235566777788888998888766665543211 11111233333322
Q ss_pred -CChHHHHHHHc-CCcc-ceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCC
Q 010723 168 -WCDNVVDLILA-TDEE-AILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNE 244 (502)
Q Consensus 168 -~~~~~~~~~~~-~~~~-~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~ 244 (502)
+.+.+.+.+.. .+.. .+...+... .+...|..+|++|+|||||+|+|++|||||+||+||..|+++|...-.
T Consensus 291 ~~p~~l~~~f~~~~~~~~~~~~~p~~~-l~~~~~~~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL~~~~~---- 365 (514)
T PLN02985 291 QVPPKLRKIFLKGIDEGAHIKVVPTKR-MSATLSDKKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSN---- 365 (514)
T ss_pred ccCHHHHHHHHhhcccccceeecCccc-ccccccCCCCEEEEecccccCCCCccccHhHHHHHHHHHHHHhhhccc----
Confidence 23344443321 1111 122222222 233466789999999999999999999999999999999999986421
Q ss_pred CCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 010723 245 SKTPIDIVSALKSYERARRLRVAVIHGLARSAA 277 (502)
Q Consensus 245 ~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~ 277 (502)
..+..+..++|+.|+++|++++..++.+|+.+.
T Consensus 366 ~~~~~~~~~aL~~y~~~Rk~r~~~i~~la~al~ 398 (514)
T PLN02985 366 LGNANKVSEVIKSFYDIRKPMSATVNTLGNAFS 398 (514)
T ss_pred ccchhHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 112346688999999999999999998887643
No 44
>PTZ00367 squalene epoxidase; Provisional
Probab=99.94 E-value=2.4e-25 Score=233.41 Aligned_cols=251 Identities=18% Similarity=0.147 Sum_probs=158.3
Q ss_pred eEEEeeHHHHHHHHHhcc-----CCCeEecCCeEEEEEeeCC-------eEEEEEcc-----------------------
Q 010723 21 VTRVISRMTLQQILAKAV-----GDEIILNESNVIDFKDHGD-------KVSVVLEN----------------------- 65 (502)
Q Consensus 21 ~~~~i~R~~L~~~L~~~~-----~~~~v~~~~~v~~i~~~~~-------~v~v~~~d----------------------- 65 (502)
.++.++|..|.+.|++.+ ++++++ ..+|+++..+++ +|++++.+
T Consensus 124 ~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~-~~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 202 (567)
T PTZ00367 124 SGVSFHFGDFVQNLRSHVFHNCQDNVTML-EGTVNSLLEEGPGFSERAYGVEYTEAEKYDVPENPFREDPPSANPSATTV 202 (567)
T ss_pred ceeEeEHHHHHHHHHHHHHhhcCCCcEEE-EeEEEEeccccCccCCeeEEEEEecCCccccccccccccccccccccccc
Confidence 477889999999998876 345565 457888754432 46666554
Q ss_pred CcEEEeeEEEEecCCCchhhccccCCCCCcccceEEEEEEec-CCCCCccccceEEEecCceEEEEEeCCCCeEEEEEEE
Q 010723 66 GQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIAD-FVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFH 144 (502)
Q Consensus 66 g~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 144 (502)
+++++||+||||||++|++|+.+.... +.+.....+.+... ....+. ......++++++.++++|++++...+++.+
T Consensus 203 g~~~~AdLvVgADG~~S~vR~~l~~~~-~~~~~~s~~~g~~~~~~~lp~-~~~~~v~~g~~gpi~~yPl~~~~~r~lv~~ 280 (567)
T PTZ00367 203 RKVATAPLVVMCDGGMSKFKSRYQHYT-PASENHSHFVGLVLKNVRLPK-EQHGTVFLGKTGPILSYRLDDNELRVLVDY 280 (567)
T ss_pred ceEEEeCEEEECCCcchHHHHHccCCC-CCcCcceEEEEEEEecccCCC-CCeeEEEEcCCceEEEEEcCCCeEEEEEEe
Confidence 568999999999999999999984321 22222233333321 111111 122345678888899999998887665554
Q ss_pred cCCCCCCCCCcchHHHHHHHhhC-CChHHHHHH-HcCCc-cceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhh
Q 010723 145 KEPAGGVDGPEGKKERLLKIFEG-WCDNVVDLI-LATDE-EAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGG 221 (502)
Q Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~-~~~~~-~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~ 221 (502)
..+... ......+.+.+.+.. +.+.+.+.+ ..... ..+..++... .+..+|..+|++|||||||+|||++||||
T Consensus 281 ~~~~~p--~~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~~l~~~p~~~-~p~~~~~~~gvvLIGDAAH~mhP~~GQGm 357 (567)
T PTZ00367 281 NKPTLP--SLEEQSEWLIEDVAPHLPENMRESFIRASKDTKRIRSMPNAR-YPPAFPSIKGYVGIGDHANQRHPLTGGGM 357 (567)
T ss_pred cCCcCC--ChHHHHHHHHHhhcccCcHHHHHHHHHhhcccCCeEEeeHhh-CCCccCCCCCEEEEEcccCCCCCcccccH
Confidence 332110 011223333333332 333444333 22211 1233334443 23456788999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhc-CCCCCChhhHHHHHH----HHHHHhHHHHHHHHHHHHHHH
Q 010723 222 CMAIEDGYQLAVELEKACKK-SNESKTPIDIVSALK----SYERARRLRVAVIHGLARSAA 277 (502)
Q Consensus 222 n~al~Da~~La~~L~~~~~~-~~~~~~~~~~~~~L~----~Y~~~R~~~~~~~~~~s~~~~ 277 (502)
|+||+||..|+++|....+. +.+.++..+...+|+ .|++.|++++..++.++..+.
T Consensus 358 n~AleDA~~La~~L~~~~~~~~~d~~d~~~v~~aL~~~~~~Y~~~Rk~~a~~i~~ls~aL~ 418 (567)
T PTZ00367 358 TCCFSDCIRLAKSLTGIKSLRSIDQNEMAEIEDAIQAAILSYARNRKTHASTINILSWALY 418 (567)
T ss_pred HHHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 99999999999999764321 001112234567777 999999999998888776643
No 45
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.88 E-value=3.9e-22 Score=218.26 Aligned_cols=229 Identities=22% Similarity=0.271 Sum_probs=148.6
Q ss_pred EEeeHHHHHHHHHhccCC--CeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhhccccC---CC-CCcc
Q 010723 23 RVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFG---PQ-EAIY 96 (502)
Q Consensus 23 ~~i~R~~L~~~L~~~~~~--~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~---~~-~~~~ 96 (502)
..++|.+|.+.|.+++.. +.+++++++++++.. ..++|+||||||++|.||+.+.. .. ...+
T Consensus 92 ~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~~------------~~~~D~VVgADG~~S~vR~~~~~~~~~~~~~~~ 159 (765)
T PRK08255 92 AGIGRKRLLNILQARCEELGVKLVFETEVPDDQAL------------AADADLVIASDGLNSRIRTRYADTFQPDIDTRR 159 (765)
T ss_pred ecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhhh------------hcCCCEEEEcCCCCHHHHHHHHhhcCCceecCC
Confidence 469999999999998743 678999988776421 24789999999999999997631 11 2222
Q ss_pred cceEEEEEEecCCCCCccccceEE-EecCce-EEEEEeCCCCeEEEEEEEcCCC---CCC--CCCcchHHHHHHHhhCCC
Q 010723 97 SGYTCYTGIADFVPADIESVGYRV-FLGHKQ-YFVSSDVGAGKMQWYAFHKEPA---GGV--DGPEGKKERLLKIFEGWC 169 (502)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~p~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~l~~~~~~~~ 169 (502)
.. +.|.+.... .....+.. ....+. ....+|..++...|++...... ... .......+.+.+.|..|.
T Consensus 160 ~~-~~w~g~~~~----~~~~~~~~~~~~~g~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~ 234 (765)
T PRK08255 160 CR-FVWLGTHKV----FDAFTFAFEETEHGWFQAHAYRFDDDTSTFIVETPEEVWRAAGLDEMSQEESIAFCEKLFADYL 234 (765)
T ss_pred Cc-eEEecCCCc----ccceeEEEEecCCceEEEEEeeeCCCCcEEEEEcCHHHHHhcCCccCCHHHHHHHHHHHhHHhc
Confidence 23 334432211 11111100 011221 1234676666655555442210 001 122345567777888876
Q ss_pred hHHHHHHHcCCccceeeeecccCCCCCcccCCC----EEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCC
Q 010723 170 DNVVDLILATDEEAILRRDIYDRTPIFTWGRGR----VTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNES 245 (502)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gr----vvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~ 245 (502)
+.. .++..........|..+.....++|+.+| |+|+|||||+|+|+.|||+|+||+||..|+++|....
T Consensus 235 ~~~-~li~~~~~~~~~~w~~~~~~~~~~w~~gr~~~~v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~------ 307 (765)
T PRK08255 235 DGH-PLMSNASHLRGSAWINFPRVVCERWVHWNRRVPVVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHEHP------ 307 (765)
T ss_pred CCC-cccccccccccceeeecceeccCCCccCCCcccEEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHHHcc------
Confidence 532 22222211111224445545567999999 9999999999999999999999999999999998641
Q ss_pred CChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 010723 246 KTPIDIVSALKSYERARRLRVAVIHGLARSAAV 278 (502)
Q Consensus 246 ~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~ 278 (502)
.+++.+|+.|++.|++++..++..++....
T Consensus 308 ---~~~~~al~~ye~~R~~r~~~~~~~s~~~~~ 337 (765)
T PRK08255 308 ---GDLPAALAAYEEERRVEVLRIQNAARNSTE 337 (765)
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 256899999999999999999998886443
No 46
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.87 E-value=5.2e-22 Score=190.10 Aligned_cols=286 Identities=21% Similarity=0.258 Sum_probs=188.1
Q ss_pred CCCeEEEeeHHHHHHHHHh-cc----CCCeEecCCeEEEEEee--------CCeEEEEEccCcEEEeeEEEEecCCCchh
Q 010723 18 GLPVTRVISRMTLQQILAK-AV----GDEIILNESNVIDFKDH--------GDKVSVVLENGQCYAGDLLIGADGIWSKV 84 (502)
Q Consensus 18 ~~p~~~~i~R~~L~~~L~~-~~----~~~~v~~~~~v~~i~~~--------~~~v~v~~~dg~~~~adlvVgADG~~S~v 84 (502)
+.+.++++....++..|+. .+ .++++....++.++... .....+++.||..+.+||||||||.||.|
T Consensus 140 ~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l~dg~~~~~~LLigAdg~Ns~v 219 (481)
T KOG3855|consen 140 GIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGMWFHITLTDGINFATDLLIGADGFNSVV 219 (481)
T ss_pred cccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCcceEEEEeccCceeeeceeeccccccchh
Confidence 4467899999999999995 22 33567777887776542 23467889999999999999999999999
Q ss_pred hccc-cCCCCCcccceEEEEEEecCCC-CCccccceEEEecCceEEEEEeCCCC--eEEEEEEEcCCCCCCCCC-cchHH
Q 010723 85 RKNL-FGPQEAIYSGYTCYTGIADFVP-ADIESVGYRVFLGHKQYFVSSDVGAG--KMQWYAFHKEPAGGVDGP-EGKKE 159 (502)
Q Consensus 85 R~~l-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~-~~~~~ 159 (502)
|+.. +....+.|.+ .+..+.....+ ......+++.|+..|++.++ |+.+. ...|.........-...+ +...+
T Consensus 220 R~~snid~~~~ny~~-havVAtl~l~~~~~~~~~AwQRFlP~GpiAll-pl~d~~s~LvWSts~~~a~~L~~lp~e~fv~ 297 (481)
T KOG3855|consen 220 RKASNIDVASWNYDQ-HAVVATLKLEEEAILNGVAWQRFLPTGPIALL-PLSDTLSSLVWSTSPENASILKSLPEERFVD 297 (481)
T ss_pred hhhcCCCcccccccc-eeeeEEEEecccccccchhHHhcCCCCceeec-ccccccccceeecCHHHHHHHhcCCchhHHH
Confidence 9999 6777777877 44444443333 44566788999988887665 54443 355644211110001111 11222
Q ss_pred HHHHHhhCCChH-------------H----HHHHHcCCcc-------cee--------eeecccCCCCCcccCCCEEEEc
Q 010723 160 RLLKIFEGWCDN-------------V----VDLILATDEE-------AIL--------RRDIYDRTPIFTWGRGRVTLLG 207 (502)
Q Consensus 160 ~l~~~~~~~~~~-------------~----~~~~~~~~~~-------~~~--------~~~i~~~~~~~~~~~grvvLvG 207 (502)
.+...|.--.+. . ..++....+. .+. ..|+. ...+..|+.+|+.|+|
T Consensus 298 ~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~~~~q~pp~V~~v~dksRa~FPLg-f~ha~~yV~~~~Al~G 376 (481)
T KOG3855|consen 298 LLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRLANQQYPPSVFEVGDKSRAQFPLG-FGHADEYVTDRVALIG 376 (481)
T ss_pred HHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccCcccccccCCeEEEecccceeecccc-cccHHHhcCCchhhhc
Confidence 222222110000 0 0111111100 010 11111 1234588999999999
Q ss_pred CCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhh
Q 010723 208 DSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYL 287 (502)
Q Consensus 208 DAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~ 287 (502)
||||.+||.+|||.|+++.|+..|.+.|.++...+. +.....-|+.|+++|.+.... .+..++. ++.++
T Consensus 377 DAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~----DlgS~~~L~~y~~~~~~~N~~------ll~~vdk-l~klY 445 (481)
T KOG3855|consen 377 DAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGL----DLGSVEHLEPYERERLQHNYV------LLGAVDK-LHKLY 445 (481)
T ss_pred chhhccccCcccccCCChhhHHHHHHHHHHHHHhcc----cccchhhhhHHHHHHhhhcch------HHHHHHH-HHHHH
Confidence 999999999999999999999999999999988763 345567899999999888763 3444554 55677
Q ss_pred cCCCCccchhhhcccCCCCcccc--eeeeecc
Q 010723 288 GVGLGPLSFLTKFRIPHPGRVGG--RFFIDLA 317 (502)
Q Consensus 288 ~~~~~~~~~~r~~~l~~~~~~~~--~~~~~~~ 317 (502)
....+++-.+|.++|.+-++..+ .++|..+
T Consensus 446 ~t~~p~vV~~rt~GL~~~n~l~PvKN~im~~~ 477 (481)
T KOG3855|consen 446 ATSAPPVVLLRTFGLQLTNALAPVKNFIMVTA 477 (481)
T ss_pred hccCCcEEEEeccchhhccccccHHHHHHHHH
Confidence 88889999999999987777664 5555443
No 47
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.86 E-value=5.3e-20 Score=180.30 Aligned_cols=206 Identities=21% Similarity=0.235 Sum_probs=133.8
Q ss_pred CeEEEeeHHHHHHHHHhccCC--CeEecCCeEEEEEeeCCeEEEEEccC-cEEEeeEEEEecCCCchhhccccCCCCCcc
Q 010723 20 PVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENG-QCYAGDLLIGADGIWSKVRKNLFGPQEAIY 96 (502)
Q Consensus 20 p~~~~i~R~~L~~~L~~~~~~--~~v~~~~~v~~i~~~~~~v~v~~~dg-~~~~adlvVgADG~~S~vR~~l~~~~~~~~ 96 (502)
+.+++++|..|.+.|.+.+.. ++++++++|+++..+++++++.+.++ .+++||+||+|||.+|.+|+.+........
T Consensus 83 ~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~~~~~~~~~~~~~~ 162 (295)
T TIGR02032 83 ELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSIVAKKLGLRKEPRE 162 (295)
T ss_pred CcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcchHHHHhcCCCCCCcc
Confidence 457899999999999998743 67889999999998888888777654 589999999999999999998721111111
Q ss_pred cceEEEEEEecCCCCCccccceEEEec----CceEEEEEeCCCCeEEEEEEEcCCCCCCCCCcchHHHHHHHhhCCChHH
Q 010723 97 SGYTCYTGIADFVPADIESVGYRVFLG----HKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNV 172 (502)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 172 (502)
.. ..+.................++.+ ++.+.+++|..++...+.+...... ......+.+.+..... +.
T Consensus 163 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~-~~- 235 (295)
T TIGR02032 163 LG-VAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRSAE----EGEDLKKYLKDFLARR-PE- 235 (295)
T ss_pred ee-eEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeeccCC----CCCCHHHHHHHHHHhC-cc-
Confidence 11 233333322111222333344443 3467788899888765544332211 1122233333333222 21
Q ss_pred HHHHHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHH
Q 010723 173 VDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVEL 235 (502)
Q Consensus 173 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L 235 (502)
+...+......+.+.......+|..+||+|+|||||+++|++|||+|+||+||..+|++|
T Consensus 236 ---l~~~~~~~~~~~~~~~~~~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 236 ---LKDAETVEVIGAPIPIGRPDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred ---cccCcEEeeeceeeccCCCCCccccCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 112222222333444444556889999999999999999999999999999999999874
No 48
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.84 E-value=3.6e-19 Score=181.35 Aligned_cols=226 Identities=18% Similarity=0.185 Sum_probs=141.3
Q ss_pred EEEeeHHHHHHHHHhccC--CCeEecCCeEEEEEeeCCeEEEEEcc------C--cEEEeeEEEEecCCCchhhccccCC
Q 010723 22 TRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLEN------G--QCYAGDLLIGADGIWSKVRKNLFGP 91 (502)
Q Consensus 22 ~~~i~R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~v~~~d------g--~~~~adlvVgADG~~S~vR~~l~~~ 91 (502)
..+++|..|++.|.+++. .++++.+ +|+++..+++.+.+++.+ | .+++||+||||||.+|.||+.+...
T Consensus 86 ~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r~lg~~ 164 (388)
T TIGR02023 86 VGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKELGLP 164 (388)
T ss_pred eEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcHHHHHcCCC
Confidence 346999999999999863 3556554 699998888888888764 2 3799999999999999999988322
Q ss_pred CCCcccceEEEEEEecCCC--CCccccceEEEec----CceEEEEEeCCCCeEEEEEEEcCCCCCCCCCcchHHHHHHHh
Q 010723 92 QEAIYSGYTCYTGIADFVP--ADIESVGYRVFLG----HKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIF 165 (502)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 165 (502)
....+ ..++........ ...+.....++++ ++.+.+++|.++ ..+..... .. .......+++.+
T Consensus 165 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~-~~~vg~~~-~~------~~~~~~~~~~~l 234 (388)
T TIGR02023 165 KNLPR--VIAYQERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGD-HIAVGTGT-GT------HGFDAKQLQANL 234 (388)
T ss_pred CCCcE--EEEEEEEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCC-eeEEeEEE-CC------CCCCHHHHHHHH
Confidence 11111 122322221111 1122223344432 456778888864 33332211 11 011223343333
Q ss_pred hCCChHHHHHHHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCC
Q 010723 166 EGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNES 245 (502)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~ 245 (502)
....+ +...+.......++.. .+.++|..++++|||||||.++|++|||+++||+++..+|+.+.+++..+
T Consensus 235 ~~~~~-----~~~~~~~~~~~~~ip~-~~~~~~~~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~~--- 305 (388)
T TIGR02023 235 RRRAG-----LDGGQTIRREAAPIPM-KPRPRWDFGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNG--- 305 (388)
T ss_pred HHhhC-----CCCceEeeeeeEeccc-cccccccCCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhcC---
Confidence 33211 1011111111122322 34567889999999999999999999999999999999999999987642
Q ss_pred CChhhHHHHHHHHHHHhHHHHHHHHHH
Q 010723 246 KTPIDIVSALKSYERARRLRVAVIHGL 272 (502)
Q Consensus 246 ~~~~~~~~~L~~Y~~~R~~~~~~~~~~ 272 (502)
....|+.|++..+.........
T Consensus 306 -----~~~~L~~Y~~~~~~~~~~~~~~ 327 (388)
T TIGR02023 306 -----DATDLRHYERKFMKLYGTTFRV 327 (388)
T ss_pred -----CHHHHHHHHHHHHHHHHHHHHH
Confidence 1467999999988776544333
No 49
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.84 E-value=2.6e-19 Score=184.29 Aligned_cols=234 Identities=15% Similarity=0.123 Sum_probs=141.1
Q ss_pred CeEEEeeHHHHHHHHHhccC--CCeEecCCeEEEEEee---CCeEEEEEcc-------C--cEEEeeEEEEecCCCchhh
Q 010723 20 PVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDH---GDKVSVVLEN-------G--QCYAGDLLIGADGIWSKVR 85 (502)
Q Consensus 20 p~~~~i~R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~---~~~v~v~~~d-------g--~~~~adlvVgADG~~S~vR 85 (502)
++..+++|..|++.|.+++. .++++.+ ++++++.. ++.+.|++.+ | .+++||+||||||++|.||
T Consensus 124 ~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S~vr 202 (450)
T PLN00093 124 EYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANSRVA 202 (450)
T ss_pred CeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcchHHH
Confidence 45567999999999999763 3566665 57777642 3456666643 3 4799999999999999999
Q ss_pred ccccCCCCCcccceEEEEEEecCCC--CCccccceEEEec----CceEEEEEeCCCCeEEEEEEEcCCCCCCCCCcchHH
Q 010723 86 KNLFGPQEAIYSGYTCYTGIADFVP--ADIESVGYRVFLG----HKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKE 159 (502)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (502)
+.+.... ..+ ..++...+.... .+......+++++ ++.|.+++|.++ ........... .....
T Consensus 203 r~lg~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~Y~WifP~g~-~~~VG~g~~~~-------~~~~~ 271 (450)
T PLN00093 203 KDIDAGD-YDY--AIAFQERIKIPDDKMEYYEDLAEMYVGDDVSPDFYGWVFPKCD-HVAVGTGTVVN-------KPAIK 271 (450)
T ss_pred HHhCCCC-cce--eEEEEEEEeCChhhccccCCeEEEEeCCCCCCCceEEEEECCC-cEEEEEEEccC-------CCChH
Confidence 9983221 111 123222221111 1122223445554 456788889874 33332211110 01112
Q ss_pred HHHHHhhCCChHHHHHHHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhh
Q 010723 160 RLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKAC 239 (502)
Q Consensus 160 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~ 239 (502)
.+.+.+.. .+...+...+...+...++.. .+..+|..+|++|||||||.++|++|+|+++||+++..+|+.+.+++
T Consensus 272 ~~~~~l~~---~~~~~l~~~~~~~~~~~~ip~-~~~~~~~~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~ 347 (450)
T PLN00093 272 KYQRATRN---RAKDKIAGGKIIRVEAHPIPE-HPRPRRVRGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGS 347 (450)
T ss_pred HHHHHHHH---HhhhhcCCCeEEEEEEEEccc-ccccceeCCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHH
Confidence 22222221 111111111112223334443 34568889999999999999999999999999999999999999887
Q ss_pred hcCCCCCChhhHHHHHHHHHHHhHHHHHHHHHHH
Q 010723 240 KKSNESKTPIDIVSALKSYERARRLRVAVIHGLA 273 (502)
Q Consensus 240 ~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s 273 (502)
+.+. .......|..|++..+.........+
T Consensus 348 ~~g~----~~~s~~~L~~Y~~~~~~~~g~~~~~~ 377 (450)
T PLN00093 348 ENGT----RMVDEADLREYLRKWDKKYWPTYKVL 377 (450)
T ss_pred hcCC----CcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5421 11124678999998776655444333
No 50
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.82 E-value=4.5e-18 Score=173.41 Aligned_cols=230 Identities=17% Similarity=0.140 Sum_probs=138.3
Q ss_pred eEEEeeHHHHHHHHHhccCC--CeEecCCeEEEEEe---eCCeEEEEE--cc-----C--cEEEeeEEEEecCCCchhhc
Q 010723 21 VTRVISRMTLQQILAKAVGD--EIILNESNVIDFKD---HGDKVSVVL--EN-----G--QCYAGDLLIGADGIWSKVRK 86 (502)
Q Consensus 21 ~~~~i~R~~L~~~L~~~~~~--~~v~~~~~v~~i~~---~~~~v~v~~--~d-----g--~~~~adlvVgADG~~S~vR~ 86 (502)
+.++++|..|++.|.+++.. ++++.+ ++++++. .++.+.|++ .+ | .+++|++||||||++|.||+
T Consensus 86 ~~~~v~R~~~d~~L~~~a~~~G~~v~~~-~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S~v~~ 164 (398)
T TIGR02028 86 YIGMLRREVLDSFLRRRAADAGATLING-LVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANSRVAK 164 (398)
T ss_pred ceeeeeHHHHHHHHHHHHHHCCcEEEcc-eEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcchHHHH
Confidence 44579999999999998743 567776 4777753 234455554 22 3 37999999999999999999
Q ss_pred cccCCCCCcccceEEEEEEecCCCC--CccccceEEEec----CceEEEEEeCCCCeEEEEEEEcCCCCCCCCCcchHHH
Q 010723 87 NLFGPQEAIYSGYTCYTGIADFVPA--DIESVGYRVFLG----HKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKER 160 (502)
Q Consensus 87 ~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (502)
.+.... +.....+......... .......+++++ +++|.+++|.++ ...+...... .......
T Consensus 165 ~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~gY~WifP~~~-~~~VG~g~~~-------~~~~~~~ 233 (398)
T TIGR02028 165 EIDAGD---YSYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKCD-HVAVGTGTVA-------AKPEIKR 233 (398)
T ss_pred HhCCCC---cceEEEEEEEeeCChhhcccCCCeEEEEeCCCCCCCceEEEEECCC-eEEEEEEeCC-------CCccHHH
Confidence 983221 1111222222221111 112233455554 456888999874 4433221111 1112233
Q ss_pred HHHHhhCCChHHHHHHHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhh
Q 010723 161 LLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACK 240 (502)
Q Consensus 161 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~ 240 (502)
+.+.+... ....+.......+...++.. .+.++|..++++|||||||.++|++|+|+++||+++..+|+.+.++++
T Consensus 234 ~~~~l~~~---~~~~~~~~~~~~~~~~~ip~-~~~~~~~~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~ 309 (398)
T TIGR02028 234 LQSGIRAR---AAGKVAGGRIIRVEAHPIPE-HPRPRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESR 309 (398)
T ss_pred HHHhhhhh---hhhccCCCcEEEEEEEeccc-cccccEECCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHh
Confidence 43333221 11111111111222233333 234578899999999999999999999999999999999999999876
Q ss_pred cCCCCCChhhHHHHHHHHHHHhHHHHHHHH
Q 010723 241 KSNESKTPIDIVSALKSYERARRLRVAVIH 270 (502)
Q Consensus 241 ~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~ 270 (502)
.+ +.......|..|++..+.......
T Consensus 310 ~~----~~~~~~~~l~~Y~~~~~~~~~~~~ 335 (398)
T TIGR02028 310 LG----GAVTEEGDLAGYLRRWDKEYRPTY 335 (398)
T ss_pred cC----CCcCCHHHHHHHHHHHHHHHHHHH
Confidence 43 111235679999997776554433
No 51
>PRK11445 putative oxidoreductase; Provisional
Probab=99.81 E-value=2.2e-18 Score=173.00 Aligned_cols=215 Identities=16% Similarity=0.140 Sum_probs=125.9
Q ss_pred EEEeeHHHHHHHHHhccC-CCeEecCCeEEEEEeeCCeEEEEE-ccCc--EEEeeEEEEecCCCchhhccccCCC-CCcc
Q 010723 22 TRVISRMTLQQILAKAVG-DEIILNESNVIDFKDHGDKVSVVL-ENGQ--CYAGDLLIGADGIWSKVRKNLFGPQ-EAIY 96 (502)
Q Consensus 22 ~~~i~R~~L~~~L~~~~~-~~~v~~~~~v~~i~~~~~~v~v~~-~dg~--~~~adlvVgADG~~S~vR~~l~~~~-~~~~ 96 (502)
.+.++|..|++.|.+.+. .+++++++++++++++++++.|++ ++|+ +++||+||+|||++|.+|+.+.... ...|
T Consensus 93 ~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~vr~~l~~~~~~~~~ 172 (351)
T PRK11445 93 YINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANSMVRRHLYPDHQIRKY 172 (351)
T ss_pred cccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCcHHhHHhcCCCchhhE
Confidence 357999999999998653 367999999999998888888886 5664 6899999999999999999884322 2223
Q ss_pred cceEEEEEEecCCCCCccccceEEEec---CceEEEEEeCCCCeEEEEEEEcCCCCCCCCCcchHHHHHHHhhCCChHHH
Q 010723 97 SGYTCYTGIADFVPADIESVGYRVFLG---HKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVV 173 (502)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 173 (502)
. ++....... .+. + .+..++. ...+.+.+|.++... ..... +. .......+.+.+.+......+.
T Consensus 173 ~---~~~~~~~~~-~~~-~-~~~~~f~~~~~~~~~W~~p~~~~~~-~g~~~--~~---~~~~~~~~~l~~~l~~~~~~~~ 240 (351)
T PRK11445 173 V---AIQQWFAEK-HPV-P-FYSCIFDNEITDCYSWSISKDGYFI-FGGAY--PM---KDGRERFETLKEKLSAFGFQFG 240 (351)
T ss_pred E---EEEEEecCC-CCC-C-CcceEEeccCCCceEEEeCCCCcEE-ecccc--cc---cchHHHHHHHHHHHHhcccccc
Confidence 2 222222111 110 1 1111111 234555556543221 11111 10 0011111122222221110000
Q ss_pred HHHHcCCccceeeeecccCCCCC--cccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCChhhH
Q 010723 174 DLILATDEEAILRRDIYDRTPIF--TWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDI 251 (502)
Q Consensus 174 ~~~~~~~~~~~~~~~i~~~~~~~--~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~ 251 (502)
+.+.. ....+....... .+.++|++|||||||.++|++|||+|+|++|+..|++.|.+..
T Consensus 241 ~~~~~------~~~~~~~~~~~~~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~~------------ 302 (351)
T PRK11445 241 KPVKT------EACTVLRPSRWQDFVCGKDNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQP------------ 302 (351)
T ss_pred ccccc------ccccccCcccccccccCCCCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhcc------------
Confidence 11100 000011101112 2346899999999999999999999999999999999997642
Q ss_pred HHHHHHHHHHhHHHH
Q 010723 252 VSALKSYERARRLRV 266 (502)
Q Consensus 252 ~~~L~~Y~~~R~~~~ 266 (502)
...|+.|++..+.-.
T Consensus 303 ~~~~~~y~~~~~~~~ 317 (351)
T PRK11445 303 EKLNTAYWRKTRKLR 317 (351)
T ss_pred cchHHHHHHHHHHHH
Confidence 356889999766554
No 52
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.78 E-value=1.5e-17 Score=155.24 Aligned_cols=218 Identities=20% Similarity=0.147 Sum_probs=137.1
Q ss_pred eeEEEEecCCCchhhccccCCCCCcccceEEEEEEec-CCCCCccccceEEEecCceEEEEEeCCCCeEEEEEEEcCCCC
Q 010723 71 GDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIAD-FVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAG 149 (502)
Q Consensus 71 adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 149 (502)
|.++|.|||..|+.|+.+. ...+... .-+.|..- ..+.+ ....-++++++....++|+++...++..+-++.+.-
T Consensus 2 A~LtivaDG~~S~fRk~l~-~~~~~v~--S~fvGl~l~~~~lp-~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp~~k~ 77 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELS-DNKPQVR--SYFVGLILKDAPLP-KPNHGHVILGKPGPILLYQISSNETRVLVDVPGPKL 77 (276)
T ss_pred CCEEEEecCCchHHHHhhc-CCCCcee--eeEEEEEEcCCCCC-CCCceEEEEcCCCcEEEEEcCCCceEEEEEeCCCcc
Confidence 7899999999999999986 2233222 23334321 11222 222335677777888899999998887765544311
Q ss_pred CCCCCcchHHHHHHHhhC-CChHHHHH-HHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHH
Q 010723 150 GVDGPEGKKERLLKIFEG-WCDNVVDL-ILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIED 227 (502)
Q Consensus 150 ~~~~~~~~~~~l~~~~~~-~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~D 227 (502)
......+.++.+.+.... ..+.+.+. ....+...+...+... .+.......+++|+|||++..||++|+||+.|+.|
T Consensus 78 P~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~rirsMPn~~-lp~~~~~~~G~vllGDA~nmrHPLTGgGMTVAl~D 156 (276)
T PF08491_consen 78 PSVSNGELKEYLREVVAPQLPEELRPSFEKALEDGRIRSMPNSF-LPASPNWKPGVVLLGDAANMRHPLTGGGMTVALND 156 (276)
T ss_pred CCccchHHHHHHHHHHHhhchHHHHHHHHHHhccCCcceecccc-cCCCCCCCCCEEEEehhhcCcCCccccchhhHHHH
Confidence 111111333444443332 23334332 2233333333333332 23334455789999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCC
Q 010723 228 GYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPH 304 (502)
Q Consensus 228 a~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~ 304 (502)
+..|++.|..... -.+...+.++|+.|+.+|++....+.-++.. +..+|..+...+..+|+..+..
T Consensus 157 v~lL~~lL~~~~d----l~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~a-------LY~lF~a~~~~l~~Lr~gcf~Y 222 (276)
T PF08491_consen 157 VVLLRDLLSPIPD----LSDTKAVLEALKKFHWKRKPLSSVINILAQA-------LYSLFAADDDYLKALRQGCFKY 222 (276)
T ss_pred HHHHHHHHhhhcC----cccHHHHHHHHHHHHHHHccchHHHHHHHHH-------HHHHHhCCCHHHHHHHHHHHHH
Confidence 9999999988611 2234567889999999999998766544433 3346666666666777766543
No 53
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.75 E-value=3.9e-16 Score=159.21 Aligned_cols=232 Identities=20% Similarity=0.153 Sum_probs=150.5
Q ss_pred CeEEEeeHHHHHHHHHhccCC--CeEecCCeEEEEEeeCCeEEEEEccC-cEEEeeEEEEecCCCchhhccccCCCCCcc
Q 010723 20 PVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENG-QCYAGDLLIGADGIWSKVRKNLFGPQEAIY 96 (502)
Q Consensus 20 p~~~~i~R~~L~~~L~~~~~~--~~v~~~~~v~~i~~~~~~v~v~~~dg-~~~~adlvVgADG~~S~vR~~l~~~~~~~~ 96 (502)
+.+|+++|..|++.|.+++.. +.++.+++++++..+++++.+....+ .+++|++||+|||.+|.+++.+........
T Consensus 87 ~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~~~lg~~~~~~~ 166 (396)
T COG0644 87 GEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALARKLGLKDRKPE 166 (396)
T ss_pred CceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHHHHHhCCCCCChh
Confidence 559999999999999988753 67999999999999887776555544 789999999999999999999943311111
Q ss_pred cceEEEEEEecCCCCCccccceEEE-----ecCceEEEEEeCCCCeEEEEEEEcCCCCCCCCCcchHHHHHHHhhCCChH
Q 010723 97 SGYTCYTGIADFVPADIESVGYRVF-----LGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDN 171 (502)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 171 (502)
....+...+.. .+ .+.....++ ..++++.+++|.+++..+..+...... .......+.+.++... +.
T Consensus 167 ~~~~~~~e~~~-~~--~~~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~~~~~---~~~~~~~~~l~~f~~~--~~ 238 (396)
T COG0644 167 DYAIGVKEVIE-VP--DDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLLDD---PSLSPFLELLERFKEH--PA 238 (396)
T ss_pred heeEEeEEEEe-cC--CCCceEEEEecCCccCCCceEEEEECCCceEEEEEEEecCC---cCCCchHHHHHHHHhC--cc
Confidence 11122222222 22 111111222 235778999999988766655443322 1111111233333222 12
Q ss_pred HHHHHHcCCccceeeeecccCCCCCc-ccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCChhh
Q 010723 172 VVDLILATDEEAILRRDIYDRTPIFT-WGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPID 250 (502)
Q Consensus 172 ~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~ 250 (502)
....+.......+....+........ ++.++++||||||..++|++|.|+..||..|..+|+.+.+++..+
T Consensus 239 ~~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~~-------- 310 (396)
T COG0644 239 IRKLLLGGKILEYAAGGIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEGG-------- 310 (396)
T ss_pred cchhccCCceEEEeeeecccCCcCCCccccCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHHcC--------
Confidence 22222112222233333433333333 788999999999999999999999999999999999999986541
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 010723 251 IVSALKSYERARRLRVAV 268 (502)
Q Consensus 251 ~~~~L~~Y~~~R~~~~~~ 268 (502)
...|..|++..+.....
T Consensus 311 -~~~l~~Y~~~~~~~~~~ 327 (396)
T COG0644 311 -EEALAEYERLLRKSLAR 327 (396)
T ss_pred -hhHHHHHHHHHHHHHHH
Confidence 56788888887766543
No 54
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.72 E-value=1.8e-17 Score=124.49 Aligned_cols=67 Identities=40% Similarity=0.732 Sum_probs=62.2
Q ss_pred EEEcCCCCCCCCCceeeeCCccccccceEEEEeCC-eEEEEEcCCccceeecCCCCceeecCCCCcEEeCCCCEEEeC
Q 010723 394 YLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDG-AFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFG 470 (502)
Q Consensus 394 ~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~-~~~i~d~~s~nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g 470 (502)
++|||++.|+ |+++++.|||.||.|.++++ .|+|+|++|+||||||+. ++.++.+..|++||+|.||
T Consensus 1 ~~iGR~~~~d-----i~l~~~~iSr~Ha~i~~~~~~~~~i~d~~s~ngt~vng~-----~l~~~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRSPDCD-----IVLPDPSISRRHARISFDDDGQFYIEDLGSTNGTFVNGQ-----RLGPGEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESSTTSS-----EEETSTTSSTTSEEEEEETTEEEEEEESSSSS-EEETTE-----EESSTSEEEE-TTEEEEET
T ss_pred CEEcCCCCCC-----EEECCHheeeeeeEEEEeceeeEEEEeCCCCCcEEECCE-----EcCCCCEEECCCCCEEEcC
Confidence 5899998887 99999999999999999988 999999999999999999 9999999999999999998
No 55
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.71 E-value=1.2e-15 Score=155.64 Aligned_cols=227 Identities=14% Similarity=0.075 Sum_probs=130.1
Q ss_pred EEeeHHHHHHHHHhccCC--CeEecCCeEEEEEee-CCeEEEEEccCcEEEeeEEEEecCCCchhhccccCCCCCcccce
Q 010723 23 RVISRMTLQQILAKAVGD--EIILNESNVIDFKDH-GDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGY 99 (502)
Q Consensus 23 ~~i~R~~L~~~L~~~~~~--~~v~~~~~v~~i~~~-~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~ 99 (502)
..++|..|++.|.+.+.. +.++ ..+|++++.+ ++.+.|++.+|++++|++||+|||.+|.+++...+.. ..+...
T Consensus 80 ~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s~~~~~~~~~~-~~~q~~ 157 (388)
T TIGR01790 80 GSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGPLVQYVRFPLN-VGFQVA 157 (388)
T ss_pred eEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCchhcccccCCCC-ceEEEE
Confidence 369999999999987743 4454 5688888877 6677888888989999999999999997765432211 111111
Q ss_pred EEEEEEecCCCCCccccceEE-E-ecC--------ce--EEEEEeCCCCeEEEEEEEcCCCCCCCCCcchHHHHHHHhhC
Q 010723 100 TCYTGIADFVPADIESVGYRV-F-LGH--------KQ--YFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEG 167 (502)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~-~-~~~--------~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 167 (502)
..+.......+.+.+. ...+ + ..+ .. +++.+|.+++...+.... .........+...+.+.+.++.
T Consensus 158 ~G~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~~~-~~~~~~~~~~~~~~~l~~~~~~ 235 (388)
T TIGR01790 158 YGVEARLSRPPHGPSS-MVIMDARVDQLAAPELKGYRPTFLYAMPLGSTRVFIEETS-LADRPALPRDRLRQRILARLNA 235 (388)
T ss_pred EEEEEEEcCCCCCCCc-eEEEeccccccccccccCCCCceEEEeecCCCeEEEEecc-ccCCCCCCHHHHHHHHHHHHHH
Confidence 1111111111111111 1111 1 011 12 667778877665432211 1100000111222233333322
Q ss_pred CChHHHHHHHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCC
Q 010723 168 WCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKT 247 (502)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~ 247 (502)
......+ .........|+. ....+..+|++|||||||.++|++|+|+++|+++|..||+.|.+++..
T Consensus 236 ~g~~~~~----i~~~~~~~iP~~---~~~~~~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~------ 302 (388)
T TIGR01790 236 QGWQIKT----IEEEEWGALPVG---LPGPFLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQ------ 302 (388)
T ss_pred cCCeeeE----EEeeeeEEEecc---cCCCccCCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhcc------
Confidence 1100000 000011111221 122347899999999999999999999999999999999999988753
Q ss_pred hhhHHHHHHHHHHHhHHHHHH
Q 010723 248 PIDIVSALKSYERARRLRVAV 268 (502)
Q Consensus 248 ~~~~~~~L~~Y~~~R~~~~~~ 268 (502)
+...+++.|++..+++..+
T Consensus 303 --~~~~~~~~~~~~~~~~~~~ 321 (388)
T TIGR01790 303 --SSELATAAWDGLWPTERRR 321 (388)
T ss_pred --CHHHHHHHHHHhchHHHHH
Confidence 2367888887766655543
No 56
>PRK10015 oxidoreductase; Provisional
Probab=99.70 E-value=9.5e-16 Score=157.61 Aligned_cols=234 Identities=15% Similarity=0.077 Sum_probs=139.5
Q ss_pred eEEEeeHHHHHHHHHhccC--CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhhccc-cCCCCCccc
Q 010723 21 VTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL-FGPQEAIYS 97 (502)
Q Consensus 21 ~~~~i~R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l-~~~~~~~~~ 97 (502)
.+|++.|..|++.|.+++. .+.++.+++|+++..+++.+.....++.+++|++||+|||.+|.+++.+ +........
T Consensus 101 ~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~s~v~~~lg~~~~~~~~~ 180 (429)
T PRK10015 101 ASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNSMLGRSLGMVPASDPHH 180 (429)
T ss_pred CceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcchhhhcccCCCcCCCcCe
Confidence 3799999999999998774 3678999999999877777664445566899999999999999999987 222111111
Q ss_pred ceEEEEEEecCCCCCc---------cccceEEEec--Cce---EEEEEeCCCCeEEEEEEEcCCCCCCCCCcchHHHHHH
Q 010723 98 GYTCYTGIADFVPADI---------ESVGYRVFLG--HKQ---YFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLK 163 (502)
Q Consensus 98 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~--~~~---~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 163 (502)
...++..... .+.+. ....+.++.+ .++ ..++++ ..+.+.+.+.+.... . .........+++
T Consensus 181 ~~~gvk~~~~-~~~~~i~~~~~~~~~~g~~w~~~g~~~~g~~g~G~~~~-~~d~v~vGv~~~~~~-~-~~~~~~~~~~l~ 256 (429)
T PRK10015 181 YAVGVKEVIG-LTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYT-NKDSISLGLVCGLGD-I-AHAQKSVPQMLE 256 (429)
T ss_pred EEEEEEEEEe-CCHHHhhHhhcCCCCCCeEEEecCccCCCCCCceEEEE-cCCcEEEEEEEehhh-h-ccCCCCHHHHHH
Confidence 1122222221 11110 0011111111 011 112222 233343322111100 0 001123344555
Q ss_pred HhhCCChHHHHHHHcCCccceeeeeccc--CCCCCcccCCCEEEEcCCccccCC--CchhhhhHHHHHHHHHHHHHHHhh
Q 010723 164 IFEGWCDNVVDLILATDEEAILRRDIYD--RTPIFTWGRGRVTLLGDSVHAMQP--NLGQGGCMAIEDGYQLAVELEKAC 239 (502)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~grvvLvGDAAH~~~P--~~GqG~n~al~Da~~La~~L~~~~ 239 (502)
.|. .+|.+.+++...+..+.....++. ....++.+.++++||||||..++| ++|+||++||.++..+|+.+.+++
T Consensus 257 ~~~-~~p~~~~~~~~~~~~e~~~~~ip~gg~~~~~~~~~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~ 335 (429)
T PRK10015 257 DFK-QHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAK 335 (429)
T ss_pred HHh-hChHHHHHhcCCEEEEEeeEEcccCCcccCCccccCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHH
Confidence 554 356666666443322233333322 123457788999999999999985 699999999999999999999987
Q ss_pred hcCCCCCChhhHHHHHHHHHHHhHHH
Q 010723 240 KKSNESKTPIDIVSALKSYERARRLR 265 (502)
Q Consensus 240 ~~~~~~~~~~~~~~~L~~Y~~~R~~~ 265 (502)
+.+ +.....|..|++..+..
T Consensus 336 ~~~------d~s~~~l~~Y~~~~~~~ 355 (429)
T PRK10015 336 ERA------DFSASSLAQYKRELEQS 355 (429)
T ss_pred hcC------CCccccHHHHHHHHHHC
Confidence 742 22356789999877654
No 57
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.70 E-value=1.6e-15 Score=156.16 Aligned_cols=235 Identities=14% Similarity=0.063 Sum_probs=140.6
Q ss_pred CeEEEeeHHHHHHHHHhccC--CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhhccccCCCCCccc
Q 010723 20 PVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYS 97 (502)
Q Consensus 20 p~~~~i~R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~ 97 (502)
+.+|.+.|..|++.|.+.+. .+.++.+++|++++.+++.+.+...+|.+++|++||+|||.+|.+++.+.-.......
T Consensus 100 ~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~s~l~~~lgl~~~~~~~ 179 (428)
T PRK10157 100 QRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVKPT 179 (428)
T ss_pred CCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCCHHHHHHcCCCCCCCCc
Confidence 35789999999999999773 3678999999999887777655556778899999999999999999987211112222
Q ss_pred ceEEE--EEEecCCCCC-c--------cccceEEEec---Cc--eEEEEEeCCCCeEEEEEEEcCCCCCCCCCcchHHHH
Q 010723 98 GYTCY--TGIADFVPAD-I--------ESVGYRVFLG---HK--QYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERL 161 (502)
Q Consensus 98 ~~~~~--~~~~~~~~~~-~--------~~~~~~~~~~---~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 161 (502)
. .++ ...... +.. . ......++.+ .+ +..+.++ ..+.+.+.+..... .. ........++
T Consensus 180 ~-~av~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~g~~~~g~~ggG~~~~-~~~~~svG~~~~~~-~~-~~~~~~~~~~ 254 (428)
T PRK10157 180 D-VAVGVKELIEL-PKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYT-NENTLSLGLVCGLH-HL-HDAKKSVPQM 254 (428)
T ss_pred E-EEEEEEEEEEc-CHHHHHHhhccCCCCCeEEEEEECCCCCCcCceeEEE-cCCeEEEEEEEehH-Hh-cccCCCHHHH
Confidence 1 222 111111 111 0 0111222222 10 0012222 23333332222111 00 0111234455
Q ss_pred HHHhhCCChHHHHHHHcCCccceeeeecc--cCCCCCcccCCCEEEEcCCccccCC--CchhhhhHHHHHHHHHHHHHHH
Q 010723 162 LKIFEGWCDNVVDLILATDEEAILRRDIY--DRTPIFTWGRGRVTLLGDSVHAMQP--NLGQGGCMAIEDGYQLAVELEK 237 (502)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~grvvLvGDAAH~~~P--~~GqG~n~al~Da~~La~~L~~ 237 (502)
++.|.. +|.+...+.......+....+. .....++.+.+++++|||||..++| ++|+|+++||.++..+|+.+.+
T Consensus 255 l~~~~~-~p~v~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~ 333 (428)
T PRK10157 255 LEDFKQ-HPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLS 333 (428)
T ss_pred HHHHHh-CchHHHHhCCCeEHHHHhhHhhcCCcccCCceecCCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHH
Confidence 555543 4555555433322122221122 1123346678999999999999998 5999999999999999999999
Q ss_pred hhhcCCCCCChhhHHHHHHHHHHHhHHHH
Q 010723 238 ACKKSNESKTPIDIVSALKSYERARRLRV 266 (502)
Q Consensus 238 ~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~ 266 (502)
+++.+ +.....|..|++.-+..+
T Consensus 334 a~~~~------~~s~~~l~~Y~~~l~~~~ 356 (428)
T PRK10157 334 AMKSD------DFSKQKLAEYRQHLESGP 356 (428)
T ss_pred HHhcC------CcchhhHHHHHHHHHHhH
Confidence 88753 234567999998766654
No 58
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.62 E-value=3.1e-14 Score=143.44 Aligned_cols=224 Identities=10% Similarity=0.044 Sum_probs=126.2
Q ss_pred CCCeEEEeeHHHHHHHHHhccCCCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhhccccCCCCCccc
Q 010723 18 GLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYS 97 (502)
Q Consensus 18 ~~p~~~~i~R~~L~~~L~~~~~~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~ 97 (502)
+.++ .+|+|.+|.+.|.++++.. ++++++|+++ ++++|++ ++|++++|++||+|||.+|.--.. .
T Consensus 80 ~~~Y-~~I~r~~f~~~l~~~l~~~-i~~~~~V~~v--~~~~v~l--~dg~~~~A~~VI~A~G~~s~~~~~---------~ 144 (370)
T TIGR01789 80 KTAY-RSMTSTRFHEGLLQAFPEG-VILGRKAVGL--DADGVDL--APGTRINARSVIDCRGFKPSAHLK---------G 144 (370)
T ss_pred CCCc-eEEEHHHHHHHHHHhhccc-EEecCEEEEE--eCCEEEE--CCCCEEEeeEEEECCCCCCCcccc---------c
Confidence 3455 4899999999999887655 7779999988 4555554 789999999999999999852211 1
Q ss_pred ceEEEEEEecCCCCCccccceEE--Ee---cCc-eEEEEEeCCCCeEEEEEEEcCCCCCCCCCcchHHHHHHHhhCCChH
Q 010723 98 GYTCYTGIADFVPADIESVGYRV--FL---GHK-QYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDN 171 (502)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 171 (502)
++..+.|+.-....+++.....+ |. ..+ .+++..|.+++...|-.....+. +.-..+.+.+.+..+...
T Consensus 145 ~~Q~f~G~~~r~~~p~~~~~~~lMD~~~~q~~g~~F~Y~lP~~~~~~lvE~T~~s~~-----~~l~~~~l~~~l~~~~~~ 219 (370)
T TIGR01789 145 GFQVFLGREMRLQEPHGLENPIIMDATVDQLAGYRFVYVLPLGSHDLLIEDTYYADD-----PLLDRNALSQRIDQYARA 219 (370)
T ss_pred eeeEEEEEEEEEcCCCCCCccEEEeeeccCCCCceEEEECcCCCCeEEEEEEeccCC-----CCCCHHHHHHHHHHHHHH
Confidence 11222222111112232222111 11 233 34444788888876643221110 111233333333322110
Q ss_pred HHHHHHcCCccceeeeecccCC-CCCccc-CCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCChh
Q 010723 172 VVDLILATDEEAILRRDIYDRT-PIFTWG-RGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPI 249 (502)
Q Consensus 172 ~~~~~~~~~~~~~~~~~i~~~~-~~~~~~-~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~ 249 (502)
..-........+.-..|+.... ....|. .++|+++|||||.++|.+|||++.+++||..|++.+.. .+ .
T Consensus 220 ~g~~~~~i~~~e~g~iPm~~~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~~--~~-------~ 290 (370)
T TIGR01789 220 NGWQNGTPVRHEQGVLPVLLGGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPDL--SS-------E 290 (370)
T ss_pred hCCCceEEEEeeeeEEeeecCCCcccccccCCceeeeecccccccccccccHHHHHHHHHHHHhccCc--Cc-------c
Confidence 0000000000001111221100 111233 45699999999999999999999999999999998851 10 1
Q ss_pred hHHHHHHHHHHHhHHHHHHHH
Q 010723 250 DIVSALKSYERARRLRVAVIH 270 (502)
Q Consensus 250 ~~~~~L~~Y~~~R~~~~~~~~ 270 (502)
....++..|...|+.+.....
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~ 311 (370)
T TIGR01789 291 QLAAFIDSRARRHWSKTGYYR 311 (370)
T ss_pred chhhhhhHHHHHHHHHhHHHH
Confidence 334667889999888876543
No 59
>PLN02697 lycopene epsilon cyclase
Probab=99.54 E-value=1.7e-12 Score=135.27 Aligned_cols=232 Identities=13% Similarity=0.077 Sum_probs=133.6
Q ss_pred EeeHHHHHHHHHhccC--CCeEecCCeEEEEEeeCCeEE-EEEccCcEEEeeEEEEecCCCchhhccc-cCCCCCcccce
Q 010723 24 VISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLIGADGIWSKVRKNL-FGPQEAIYSGY 99 (502)
Q Consensus 24 ~i~R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~-v~~~dg~~~~adlvVgADG~~S~vR~~l-~~~~~~~~~~~ 99 (502)
.|+|..|++.|.+++. .+.+ .+++|++++.+++++. +++.+|.+++|++||+|||.+|. +.+ .....+.+...
T Consensus 188 ~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~--rl~~~~~~~~~~~~Q 264 (529)
T PLN02697 188 RVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAASG--RLLQYEVGGPRVCVQ 264 (529)
T ss_pred EEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcChh--hhhccccCCCCcccE
Confidence 5999999999999874 3445 6789999988777765 45678889999999999999993 222 11112222222
Q ss_pred EEEEEEecCCCCCccccceEEEec---------------CceEEEEEeCCCCeEEE-EEEEcCCCCCCCCCcchHHHHHH
Q 010723 100 TCYTGIADFVPADIESVGYRVFLG---------------HKQYFVSSDVGAGKMQW-YAFHKEPAGGVDGPEGKKERLLK 163 (502)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~ 163 (502)
.++...+.....+++... .+++. ...+++..|.+++.+.+ ...+..... ...+...+.+..
T Consensus 265 ~a~Gi~ve~~~~~~d~~~-~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~l~~~~~--l~~~~l~~~L~~ 341 (529)
T PLN02697 265 TAYGVEVEVENNPYDPSL-MVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETCLASKDA--MPFDLLKKRLMS 341 (529)
T ss_pred EEEEEEEEecCCCCCcch-heeeccccccccccccccCCCceEEEEeecCCCeEEEEEeeeccCCC--CCHHHHHHHHHH
Confidence 333322222111222211 11211 12466777888777665 222211100 001122233333
Q ss_pred HhhCCChHHHHHHHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCC
Q 010723 164 IFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSN 243 (502)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~ 243 (502)
.++... +...+........++...+.+.. .++++++||||..+||.+|-|+..++.+|..+|+.++++++.+.
T Consensus 342 ~l~~~G------i~~~~i~~~E~g~iPm~g~~~~~-~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~ 414 (529)
T PLN02697 342 RLETMG------IRILKTYEEEWSYIPVGGSLPNT-EQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNVS 414 (529)
T ss_pred HHHhCC------CCcceEEEEEeeeecCCCCCccc-CCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCCc
Confidence 333210 00011111111122211222232 68899999999999999999999999999999999999987541
Q ss_pred CC---CChhhHHHHHHHHHHHhHHHHHH
Q 010723 244 ES---KTPIDIVSALKSYERARRLRVAV 268 (502)
Q Consensus 244 ~~---~~~~~~~~~L~~Y~~~R~~~~~~ 268 (502)
.. .........++.|++.......+
T Consensus 415 ~~~~~~~~~~~~~~l~~~~~lw~~e~~r 442 (529)
T PLN02697 415 SGGKLGTSNSSNISMQAWNTLWPQERKR 442 (529)
T ss_pred cccccccccchHHHHHHHHHhChHHHHH
Confidence 00 00124578899898877665543
No 60
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.51 E-value=6.8e-13 Score=126.66 Aligned_cols=246 Identities=18% Similarity=0.150 Sum_probs=157.1
Q ss_pred CeEEEeeHHHHHHHHHhcc---CCCeEecCCeEEEEEeeCCeEE-EEEc--cCc--EEEeeEEEEecCCCchhhccccCC
Q 010723 20 PVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVS-VVLE--NGQ--CYAGDLLIGADGIWSKVRKNLFGP 91 (502)
Q Consensus 20 p~~~~i~R~~L~~~L~~~~---~~~~v~~~~~v~~i~~~~~~v~-v~~~--dg~--~~~adlvVgADG~~S~vR~~l~~~ 91 (502)
+-|..+++..|.+-|++.+ +++++.. .+|.++-++++.++ |+++ .|+ +..|-|-|.|||..|..|+.+...
T Consensus 139 ~~GrsFhnGRFvq~lR~ka~slpNV~~ee-GtV~sLlee~gvvkGV~yk~k~gee~~~~ApLTvVCDGcfSnlRrsL~~~ 217 (509)
T KOG1298|consen 139 PSGRSFHNGRFVQRLRKKAASLPNVRLEE-GTVKSLLEEEGVVKGVTYKNKEGEEVEAFAPLTVVCDGCFSNLRRSLCDP 217 (509)
T ss_pred cccceeeccHHHHHHHHHHhcCCCeEEee-eeHHHHHhccCeEEeEEEecCCCceEEEecceEEEecchhHHHHHHhcCC
Confidence 4599999999999999976 4555554 45667665555332 4444 454 567899999999999999999654
Q ss_pred CCC-cccceEEEEEEecCCCCCccccceEEEecCceEEEEEeCCCCeEEEEEEEcCCCCCCCCCcchHHHHHHHhhC-CC
Q 010723 92 QEA-IYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEG-WC 169 (502)
Q Consensus 92 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 169 (502)
... ..+. +.+.+..-..-..+..-++.+++....++|+++...+++.+-++.+.-......+....+.+.... .+
T Consensus 218 ~v~~V~S~---fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISStEvRcl~~v~g~~~Psi~~gem~~~mk~~v~PqiP 294 (509)
T KOG1298|consen 218 KVEEVPSY---FVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCLVDVPGQKLPSIANGEMATYMKESVAPQIP 294 (509)
T ss_pred cccccchh---eeeeeecCCCCCCCCcceEEecCCCcEEEEEecchheEEEEecCcccCCcccchhHHHHHHHhhCcCCC
Confidence 333 2222 222221111122233345667777778889999888887765543221111112233444444433 33
Q ss_pred hHHHHHHHc-CCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCCh
Q 010723 170 DNVVDLILA-TDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTP 248 (502)
Q Consensus 170 ~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~ 248 (502)
+.+.+.+.. .+...+ +.......++....+.+++|+|||...-||.+|.||.-|+.|+..|-+.|.-... ..+.
T Consensus 295 ~~lR~~F~~av~~g~i-rsmpn~~mpa~~~~~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ll~pl~d----L~d~ 369 (509)
T KOG1298|consen 295 EKLRESFLEAVDEGNI-RSMPNSSMPATLNDKKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRLLKPLPD----LSDA 369 (509)
T ss_pred HHHHHHHHHHhhccch-hcCccccCCCCcCCCCceEEEcccccccCCccCCceEeehhHHHHHHHHhccccc----cccH
Confidence 445444332 222222 2112222344455678999999999999999999999999999999999876432 2345
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHH
Q 010723 249 IDIVSALKSYERARRLRVAVIHGLAR 274 (502)
Q Consensus 249 ~~~~~~L~~Y~~~R~~~~~~~~~~s~ 274 (502)
..+.+.+..|...|++....+.-++.
T Consensus 370 ekv~~~i~sFy~~RKp~s~tINtLa~ 395 (509)
T KOG1298|consen 370 EKVSDYIKSFYWIRKPYSATINTLAN 395 (509)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 66778899999999998876655554
No 61
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.47 E-value=7.1e-13 Score=108.04 Aligned_cols=97 Identities=38% Similarity=0.592 Sum_probs=80.4
Q ss_pred EEEEecCCCCCcccceEEeecCCCCCEEEcCCCCC-CCCCceeeeCCccccccceEEEEeC-CeEEEEEcCCccceeecC
Q 010723 368 WFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHE-DFSRTSIVIPSAQVSKMHARISYKD-GAFYLIDLQSEHGTYVTD 445 (502)
Q Consensus 368 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~-~~~~~~i~~~~~~vSr~Ha~i~~~~-~~~~i~d~~s~nGt~vn~ 445 (502)
|.|....+. .....+.|. . +..++|||...+ + +.++++.|||.||+|.+++ +.+++.|+.|+|||+||+
T Consensus 2 ~~L~~~~~~-~~~~~~~l~-~--~~~~~iGr~~~~~~-----i~l~~~~iS~~H~~i~~~~~~~~~~~~~~s~~g~~vn~ 72 (102)
T cd00060 2 PRLVVLSGD-ASGRRYYLD-P--GGTYTIGRDSDNCD-----IVLDDPSVSRRHAVIRYDGDGGVVLIDLGSTNGTFVNG 72 (102)
T ss_pred eEEEEecCC-CceeEEEEC-C--CCeEEECcCCCcCC-----EEcCCCCeeCcceEEEEcCCCCEEEEECCCCCCeEECC
Confidence 455555443 334778888 2 166999999999 6 9999999999999999997 899999999999999999
Q ss_pred CCCceeecCCCCcEEeCCCCEEEeCCCceEEEEE
Q 010723 446 NEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRV 479 (502)
Q Consensus 446 ~~~~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~ 479 (502)
. ++.++.+..|.+||.|.||.. ...|++
T Consensus 73 ~-----~~~~~~~~~l~~gd~i~ig~~-~~~~~~ 100 (102)
T cd00060 73 Q-----RVSPGEPVRLRDGDVIRLGNT-SISFRF 100 (102)
T ss_pred E-----ECCCCCcEECCCCCEEEECCe-EEEEEE
Confidence 9 998878899999999999974 335544
No 62
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.44 E-value=6.1e-12 Score=129.96 Aligned_cols=229 Identities=15% Similarity=0.130 Sum_probs=131.1
Q ss_pred cCCCeEEEeeHHHHHHHHHhccC--CCeEecCCeEEEEEeeCCe--EEEEEccCcEEEeeEEEEecCCCchhhccccCCC
Q 010723 17 KGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDK--VSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQ 92 (502)
Q Consensus 17 ~~~p~~~~i~R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~--v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~ 92 (502)
...+++|.++|..|++.|.+.+. .++++.+ +|+++..++++ ..|++++|++++||++|.|.|.+|.+.+.++...
T Consensus 143 ~~~~~ayhlDR~~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~~~~L~~~ 221 (454)
T PF04820_consen 143 SPFNYAYHLDRAKFDQFLRRHAEERGVEVIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLLARKALKVG 221 (454)
T ss_dssp BTSS-EEEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CCCCCCT-EE
T ss_pred CCCCeeEEEeHHHHHHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchhhHhhhcCC
Confidence 45678999999999999999873 3566666 58888776654 3588899999999999999999999888752211
Q ss_pred CCcccc-e---EEEEEEecCCCCCccccceEEEecCceEEEEEeCCCCeEEEEEEEcCCCCCCCCCcchHHHHHHHhhCC
Q 010723 93 EAIYSG-Y---TCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGW 168 (502)
Q Consensus 93 ~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 168 (502)
...+.. . .++...+.... .... .......+.+|++..|+.++...-+++.... . .++...+.+.+.+...
T Consensus 222 ~~~~~~~L~~d~av~~~~~~~~-~~~~-~T~~~a~~~GW~W~IPL~~~~~~G~V~s~~~-~---s~~~A~~~l~~~l~~~ 295 (454)
T PF04820_consen 222 FRDWSDWLPNDRAVAVQVPNED-PPEP-YTRSTAFEAGWIWYIPLQNRRGSGYVYSSDF-I---SDDEAEAELLAYLGGS 295 (454)
T ss_dssp EEEETTTCEEEEEEEEEEE-SS-CTTS-SEEEEEESSEEEEEEEESSEEEEEEEEETTT-S---HHHHHHHHHHHHHTCH
T ss_pred CccccccccccEEEEEecCcCC-CCCC-ceeEEecCCceEEEccCCCcceEEEEecccc-C---CHHHHHHHHHHhcchh
Confidence 111111 1 22222221111 1111 2223344677888889987766522222211 0 0111111222222110
Q ss_pred ChHHHHHHHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCCh
Q 010723 169 CDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTP 248 (502)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~ 248 (502)
. ...+ ... .+.. ....+...+++++|||||..++|+.++|+.+++..+..|++.|...
T Consensus 296 -------~-~~~~-~~i--~~~~-g~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l~~~---------- 353 (454)
T PF04820_consen 296 -------P-EAEP-RHI--RFRS-GRRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEALPDD---------- 353 (454)
T ss_dssp -------C-TTSC-EEE--E-S--EEESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTHHCT----------
T ss_pred -------h-hcch-hhh--cccc-cchhhcccCCEEEEcchhhccCccccccHHHHHHHHHHHHHhcccC----------
Confidence 0 0111 111 1111 1133455678999999999999999999999999888777777542
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHH
Q 010723 249 IDIVSALKSYERARRLRVAVIHGLAR 274 (502)
Q Consensus 249 ~~~~~~L~~Y~~~R~~~~~~~~~~s~ 274 (502)
...+.+++.|++..+.....+.++-.
T Consensus 354 ~~~~~~~~~Yn~~~~~~~~~~~~fi~ 379 (454)
T PF04820_consen 354 DFSPAALDRYNRRMRREYERIRDFIS 379 (454)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12267899999998888876654433
No 63
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=99.43 E-value=7.3e-13 Score=132.81 Aligned_cols=85 Identities=31% Similarity=0.517 Sum_probs=75.8
Q ss_pred ccceEEeecCCCCCEEEcCCCCCCCCCceeeeCCcc--ccccceEEEEeCCeEEEEEcCCccceeec--CCCCceeecCC
Q 010723 380 SQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQ--VSKMHARISYKDGAFYLIDLQSEHGTYVT--DNEGRRYRVSS 455 (502)
Q Consensus 380 ~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~--vSr~Ha~i~~~~~~~~i~d~~s~nGt~vn--~~~~~~~~~~~ 455 (502)
+..+.+. ....+|||++.|+ ++++++. ||+.||+|.++++.|+|+|+ |+|||||| +. ++.+
T Consensus 16 ~~~~~f~----~~~~~IGR~~~~d-----~~l~d~~~~VS~~Ha~I~~~~g~~~l~Dl-StNGT~VN~sg~-----~l~~ 80 (396)
T TIGR03354 16 AAQKTFG----TNGGTIGRSEDCD-----WVLPDPERHVSGRHARIRYRDGAYLLTDL-STNGVFLNGSGS-----PLGR 80 (396)
T ss_pred ceEEEEC----CCCEEEecCCCCC-----EEeCCCCCCcchhhcEEEEECCEEEEEEC-CCCCeEECCCCC-----CCCC
Confidence 3678888 5559999999998 9999998 99999999999999999999 99999999 67 8888
Q ss_pred CCcEEeCCCCEEEeCCCceEEEEEEEe
Q 010723 456 NFPARFRPSDTIEFGSDKKAIFRVKVI 482 (502)
Q Consensus 456 ~~~~~l~~gd~i~~g~~~~~~~~~~~~ 482 (502)
+.++.|++||+|+||.. .+++.+.
T Consensus 81 ~~~~~L~~GD~I~iG~~---~lrv~~~ 104 (396)
T TIGR03354 81 GNPVRLEQGDRLRLGDY---EIRVSLG 104 (396)
T ss_pred CCceEcCCCCEEEECCE---EEEEEeC
Confidence 88899999999999998 6666663
No 64
>PLN02463 lycopene beta cyclase
Probab=99.41 E-value=2.2e-11 Score=125.07 Aligned_cols=209 Identities=15% Similarity=0.131 Sum_probs=122.6
Q ss_pred CCCeEEEeeHHHHHHHHHhccCC--CeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhhccccCCCCCc
Q 010723 18 GLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAI 95 (502)
Q Consensus 18 ~~p~~~~i~R~~L~~~L~~~~~~--~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~ 95 (502)
+.+++ .|+|..|.+.|.+++.. ++++ ..+|++++.+++++.|++++|++++||+||+|||.+|++++.- .+.
T Consensus 105 ~~~y~-~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l~~~~----~~~ 178 (447)
T PLN02463 105 DRPYG-RVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRCLVQYD----KPF 178 (447)
T ss_pred cCcce-eEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcCccCCC----CCC
Confidence 34554 57999999999997743 4554 5789999998888999999999999999999999999987532 111
Q ss_pred ccceEEEEEE-ecCCCCCccccceEE--E----ec--------C---ceEEEEEeCCCCeEEEEEE--EcCCCCCCCCCc
Q 010723 96 YSGYTCYTGI-ADFVPADIESVGYRV--F----LG--------H---KQYFVSSDVGAGKMQWYAF--HKEPAGGVDGPE 155 (502)
Q Consensus 96 ~~~~~~~~~~-~~~~~~~~~~~~~~~--~----~~--------~---~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~~ 155 (502)
..++....++ +.....+.+.....+ | .+ . ..+++..|.+++.+..-.. ...+.. ..+
T Consensus 179 ~~g~Q~a~Gi~~ev~~~p~d~~~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~vEeT~l~s~~~~---~~~ 255 (447)
T PLN02463 179 NPGYQVAYGILAEVDSHPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIFLEETSLVARPGL---PMD 255 (447)
T ss_pred CccceeeeeEEeecCCCCcccccchhhhcChhhccccchhhhccCCCCceEEEEecCCCeEEEEeeeeecCCCC---CHH
Confidence 2222222222 211111111110000 0 00 0 2366777887776432221 111100 011
Q ss_pred chHHHHHHHhhCCChHHHHHHHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHH
Q 010723 156 GKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVEL 235 (502)
Q Consensus 156 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L 235 (502)
..++.+.+.++.+.-. ..+........++...+ .+...+|++++||||..++|.+|.|+..++..+..+|+.+
T Consensus 256 ~lk~~L~~~l~~~Gi~------~~~i~~~E~~~IPmg~~-~~~~~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~ 328 (447)
T PLN02463 256 DIQERMVARLRHLGIK------VKSVEEDEKCVIPMGGP-LPVIPQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAI 328 (447)
T ss_pred HHHHHHHHHHHHCCCC------cceeeeeeeeEeeCCCC-CCCCCCCEEEecchhcCcCCCccccHHHHHHHHHHHHHHH
Confidence 2222333333221100 01111111222222112 2234679999999999999999999999999999999999
Q ss_pred HHhhhcC
Q 010723 236 EKACKKS 242 (502)
Q Consensus 236 ~~~~~~~ 242 (502)
.++++.+
T Consensus 329 ~~~~~~~ 335 (447)
T PLN02463 329 VEYLGSS 335 (447)
T ss_pred HHHHhcC
Confidence 9998754
No 65
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=99.26 E-value=2.1e-11 Score=111.53 Aligned_cols=69 Identities=30% Similarity=0.502 Sum_probs=64.4
Q ss_pred CCEEEcCCCCCCCCCceeeeCCccccccceEEEEeCCeEEEEEcCCccceeecCCCCceeecCCCCcEEeCCCCEEEeCC
Q 010723 392 EPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGS 471 (502)
Q Consensus 392 ~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~~~i~d~~s~nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~ 471 (502)
..++|||+++++ +++++..|||+||.|.+++..++++|++|+||||||+. ++.. ...+++||.|.||.
T Consensus 89 ~~~tigr~~~~~-----i~~~~~~vSR~Ha~l~~~~~~~~~~d~~S~nGt~vn~~-----~v~~--~~~l~~gd~i~i~~ 156 (191)
T COG1716 89 PVTTIGRDPDND-----IVLDDDVVSRRHAELRREGNEVFLEDLGSTNGTYVNGE-----KVRQ--RVLLQDGDVIRLGG 156 (191)
T ss_pred ceEEeccCCCCC-----EEcCCCccccceEEEEEeCCceEEEECCCCcceEECCe-----EccC--cEEcCCCCEEEECc
Confidence 359999988888 99999999999999999999999999999999999999 8864 58899999999999
Q ss_pred C
Q 010723 472 D 472 (502)
Q Consensus 472 ~ 472 (502)
.
T Consensus 157 ~ 157 (191)
T COG1716 157 T 157 (191)
T ss_pred c
Confidence 8
No 66
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=99.23 E-value=1.5e-11 Score=109.25 Aligned_cols=95 Identities=32% Similarity=0.531 Sum_probs=74.5
Q ss_pred CCcEEEEecCCCCCcccceEEeecCCCCCEEEcCCCCCCCCCceeeeCCccccccceEEEEe-------CC------eEE
Q 010723 365 NGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK-------DG------AFY 431 (502)
Q Consensus 365 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~-------~~------~~~ 431 (502)
..+|-|.+..+.... ....+- ...++++||... .+||.+++++.|++||+|++. +| ..|
T Consensus 171 ~kRwrLy~fk~~e~l-~~l~iH---rqs~yL~gRerk----IaDi~idhpScSKQHaviQyR~v~~~r~dGt~grrvkpY 242 (293)
T KOG1882|consen 171 KKRWRLYPFKCYEVL-PVLYIH---RQSCYLDGRERK----IADIPIDHPSCSKQHAVIQYRLVEFTRADGTVGRRVKPY 242 (293)
T ss_pred hhheecccccCCccc-chheee---eeeeeecCceee----eeccCCCCccccccceeeeeeecccccCCCccceeeeeE
Confidence 457888877655332 233333 245699999442 367999999999999999763 22 489
Q ss_pred EEEcCCccceeecCCCCceeecCCCCcEEeCCCCEEEeCCC
Q 010723 432 LIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 472 (502)
Q Consensus 432 i~d~~s~nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~ 472 (502)
|.||+|.||||||.. +|++...++|..+|+|.||-.
T Consensus 243 iiDLgS~NgTfLNnk-----~IepqRYyEL~ekDvlkfgfs 278 (293)
T KOG1882|consen 243 IIDLGSGNGTFLNNK-----VIEPQRYYELREKDVLKFGFS 278 (293)
T ss_pred EEecCCCCcceecCc-----ccCchheeeeecCceeeeccc
Confidence 999999999999999 999999999999999999954
No 67
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=99.15 E-value=5.2e-11 Score=83.98 Aligned_cols=48 Identities=46% Similarity=0.775 Sum_probs=44.0
Q ss_pred EEEcCCC-CCCCCCceeeeCCccccccceEEEEeCC-eEEEEEcCCccceeecCC
Q 010723 394 YLIGSES-HEDFSRTSIVIPSAQVSKMHARISYKDG-AFYLIDLQSEHGTYVTDN 446 (502)
Q Consensus 394 ~~iGR~~-~~~~~~~~i~~~~~~vSr~Ha~i~~~~~-~~~i~d~~s~nGt~vn~~ 446 (502)
++|||.+ .|+ ++++++.||+.||+|.++.+ .|+|+|++|+||||||++
T Consensus 1 ~~iGr~~~~~~-----i~~~~~~vs~~H~~i~~~~~~~~~i~d~~s~~gt~vng~ 50 (52)
T smart00240 1 VTIGRSSEDCD-----IQLPGPSISRRHAEIVYDGGGRFYLIDLGSTNGTFVNGK 50 (52)
T ss_pred CEeCCCCCCCC-----EEeCCCCcchhHcEEEECCCCeEEEEECCCCCCeeECCE
Confidence 3799999 777 99999999999999999865 599999999999999997
No 68
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.14 E-value=1.1e-10 Score=113.15 Aligned_cols=87 Identities=32% Similarity=0.399 Sum_probs=74.0
Q ss_pred cceEEeecCCCCCEEEcCCCCCCCCCceeeeCCccccccceEEEEeCCeEEEEEcCCccceeecCCCCceeecCCCCc-E
Q 010723 381 QPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFP-A 459 (502)
Q Consensus 381 ~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~~~i~d~~s~nGt~vn~~~~~~~~~~~~~~-~ 459 (502)
....+. .+..+|||+++|+ ..|.-++..||+.||+|.+.+|.|+|+|. |.|||+|||. .++.+.. .
T Consensus 19 aq~~f~----~~~g~IGrs~dcd---W~i~D~~~~VS~~Hc~I~~~dg~f~L~Dt-S~g~l~VNgs-----~~~~g~~~~ 85 (430)
T COG3456 19 AQKLFD----RGGGVIGRSPDCD---WQIDDPERFVSKQHCTISYRDGGFCLTDT-SNGGLLVNGS-----DLPLGEGSA 85 (430)
T ss_pred hhhhhh----cCCcccccCCCCC---ccccCcccccchhheEEEecCCeEEEEec-CCCceeeccc-----ccCCCCCcc
Confidence 445555 5559999999999 44444556899999999999999999997 6999999999 8888877 9
Q ss_pred EeCCCCEEEeCCCceEEEEEEEec
Q 010723 460 RFRPSDTIEFGSDKKAIFRVKVIG 483 (502)
Q Consensus 460 ~l~~gd~i~~g~~~~~~~~~~~~~ 483 (502)
.|+.||+|.||.. .|++.+.+
T Consensus 86 RLqqGd~i~iG~y---~i~V~l~~ 106 (430)
T COG3456 86 RLQQGDEILIGRY---IIRVHLSR 106 (430)
T ss_pred ccccCCEEeeccE---EEEEEecc
Confidence 9999999999998 88888864
No 69
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.12 E-value=8.2e-09 Score=104.57 Aligned_cols=217 Identities=18% Similarity=0.151 Sum_probs=124.7
Q ss_pred eeEEeecCCCcccccCCCeEEEeeHHHHHHHHHhccC-CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCC
Q 010723 3 TRYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG-DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIW 81 (502)
Q Consensus 3 ~w~~~f~~~~~~~~~~~p~~~~i~R~~L~~~L~~~~~-~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~ 81 (502)
+|.+.+...+..... ++ ..+|++.+|++.|.+++. ...++.+.+|++|+.+++.+.+++++|++++|++||+|+|..
T Consensus 64 ~~~v~~~~~~~~~~~-~~-Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 64 GWRVYFPDGSRILID-YP-YCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPS 141 (374)
T ss_pred ceEEEeCCCceEEcc-cc-eEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcc
Confidence 566666655432222 23 348999999999999876 345778899999999999889999999999999999999977
Q ss_pred chhhccccCCCCCcccceEEEEEEecCCCCCccccc-eEEEec----CceEEEEEeCCCCeEEEEEEEcCCCCCCCCCcc
Q 010723 82 SKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVG-YRVFLG----HKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEG 156 (502)
Q Consensus 82 S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 156 (502)
|..-+.. .+.....+...+.....+.+... +.+... ...+++..|.+++...+-..+-.+.... ..+.
T Consensus 142 ~~~~~~~------~~Q~f~G~~v~~~~~~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~~~~~-~~~~ 214 (374)
T PF05834_consen 142 SPKARPL------GLQHFYGWEVETDEPVFDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSFSPRPAL-PEEE 214 (374)
T ss_pred ccccccc------ccceeEEEEEeccCCCCCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEEcCCCCC-CHHH
Confidence 7622111 11111222211111111111111 111121 2246667788887765432221111000 0111
Q ss_pred hHHHHHHHhhCCChHHHHHHHcCCcccee---eeeccc-CCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHH
Q 010723 157 KKERLLKIFEGWCDNVVDLILATDEEAIL---RRDIYD-RTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLA 232 (502)
Q Consensus 157 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~-~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La 232 (502)
-.+.+.+.++.. ......+. ...++. .....+-..++++.+|+||..++|.+|-++..+++.|..+|
T Consensus 215 ~~~~l~~~l~~~---------g~~~~~i~~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia 285 (374)
T PF05834_consen 215 LKARLRRYLERL---------GIDDYEILEEERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTGYSFARIQRQADAIA 285 (374)
T ss_pred HHHHHHHHHHHc---------CCCceeEEEeecceeecccCCCccccCCCeeeEEccccCCCCcccHHHHHHHHHHHHHH
Confidence 222333333221 11111111 111211 01222334567999999999999999999999999999888
Q ss_pred HHHHH
Q 010723 233 VELEK 237 (502)
Q Consensus 233 ~~L~~ 237 (502)
+.|.+
T Consensus 286 ~~l~~ 290 (374)
T PF05834_consen 286 DALAK 290 (374)
T ss_pred HHHhh
Confidence 88875
No 70
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=98.82 E-value=2.1e-09 Score=110.18 Aligned_cols=80 Identities=26% Similarity=0.512 Sum_probs=69.4
Q ss_pred CCCEEEcCCCCCCCCCceeeeCCccccccceEEEEe--CC---------eEEEEEcCCccceeecCCCCceeecCCCCcE
Q 010723 391 NEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK--DG---------AFYLIDLQSEHGTYVTDNEGRRYRVSSNFPA 459 (502)
Q Consensus 391 ~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~--~~---------~~~i~d~~s~nGt~vn~~~~~~~~~~~~~~~ 459 (502)
...++|||...|| +.+.|++|||.||.|.+. +- .|+|.|+||++|||+|.. +++|....
T Consensus 176 ~~~~~fgr~~~cD-----~~~eHpsISr~h~vlQy~~~~~~~p~~s~~~g~~i~dlgsThgt~~NK~-----rvppk~yi 245 (793)
T KOG1881|consen 176 AAACLFGRLGGCD-----VALEHPSISRFHAVLQYKASGPDDPCASNGEGWYIYDLGSTHGTFLNKD-----RVPPKVYI 245 (793)
T ss_pred ceeEEecccCCCc-----cccccCcccccceeeeccCCCCCccccCCCCceEEeeccccccceeccc-----cCCCcchh
Confidence 3449999999888 999999999999999875 22 399999999999999999 99999999
Q ss_pred EeCCCCEEEeCCCceEEEEEEE
Q 010723 460 RFRPSDTIEFGSDKKAIFRVKV 481 (502)
Q Consensus 460 ~l~~gd~i~~g~~~~~~~~~~~ 481 (502)
.++.|++++||..++ +|.|..
T Consensus 246 r~~Vg~v~~fggsTr-l~i~Qg 266 (793)
T KOG1881|consen 246 RDRVGHVARFGGSTR-LYIFQG 266 (793)
T ss_pred hhhHHHHHHhcCceE-EEEeeC
Confidence 999999999999933 555544
No 71
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only]
Probab=98.45 E-value=1.3e-07 Score=87.26 Aligned_cols=75 Identities=31% Similarity=0.607 Sum_probs=68.0
Q ss_pred CCCEEEcCCCCCCCCCceeeeCCccccccceEEEEe--CCeEEEEEcCCccceeecCCCCceeecCCCCcEEeCCCCEEE
Q 010723 391 NEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK--DGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIE 468 (502)
Q Consensus 391 ~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~--~~~~~i~d~~s~nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~ 468 (502)
+..+++||.... ||.++++.++||.||.+... ....+|.|++|++|||+... ||.+..++++..|..++
T Consensus 37 kr~y~Fgrn~q~----~df~idh~scSrvhaa~vyhkhl~~~~lidl~s~hgtf~g~~-----rL~~~~p~~l~i~~~~~ 107 (337)
T KOG1880|consen 37 KRRYLFGRNHQT----CDFVIDHASCSRVHAALVYHKHLSRIFLIDLGSTHGTFLGNE-----RLEPHKPVQLEIGSTFH 107 (337)
T ss_pred hhhhhhccCCCc----cceEeecchhhhhHhhhhhhhccceEEEEEccCCcceeeeee-----eeccCCCccccCCceEE
Confidence 666999999976 77999999999999999776 56699999999999999888 99999999999999999
Q ss_pred eCCCce
Q 010723 469 FGSDKK 474 (502)
Q Consensus 469 ~g~~~~ 474 (502)
||..+.
T Consensus 108 fgasTr 113 (337)
T KOG1880|consen 108 FGASTR 113 (337)
T ss_pred Eeccce
Confidence 999744
No 72
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.45 E-value=0.00024 Score=69.62 Aligned_cols=86 Identities=24% Similarity=0.365 Sum_probs=67.6
Q ss_pred cceEEeecCCCCCEEEcCCCCCCCCCceeeeCCccccccceEEEEe---------------CCeEEEEEcCCccceeecC
Q 010723 381 QPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK---------------DGAFYLIDLQSEHGTYVTD 445 (502)
Q Consensus 381 ~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~---------------~~~~~i~d~~s~nGt~vn~ 445 (502)
..+.+- ...+++||.+.|+ ..+....+|..|-.|..- ...+++.|. |+||||||.
T Consensus 57 ~~~d~~----nd~f~fGR~~~~d-----~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~Dh-S~nGT~VN~ 126 (475)
T KOG0615|consen 57 KSIDLA----NDEFTFGRGDSCD-----APLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDH-SRNGTFVND 126 (475)
T ss_pred ccceec----cceEEecCCCccc-----ccccCccccccchheeeeeeeeeeeecccCCCccceEEEEec-ccCcccccH
Confidence 344555 4449999999888 777777778777766321 236899996 999999999
Q ss_pred CCCceeecCCCCcEEeCCCCEEEeCCCceEEEEEEE
Q 010723 446 NEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKV 481 (502)
Q Consensus 446 ~~~~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~~~ 481 (502)
. .+..+....|+.||+|.||......|.+..
T Consensus 127 e-----~i~k~~~r~lkN~dei~is~p~~~~~v~~~ 157 (475)
T KOG0615|consen 127 E-----MIGKGLSRILKNGDEISISIPALKIFVFED 157 (475)
T ss_pred h-----HhhccccccccCCCEEEeccchhheeeeec
Confidence 9 999999999999999999997666676654
No 73
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family. This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein.
Probab=97.15 E-value=0.0017 Score=66.49 Aligned_cols=77 Identities=9% Similarity=0.168 Sum_probs=59.5
Q ss_pred ccceEEeecCCCCCEEEc-CCCCCCCCCceeeeCCccccccceEEEEeCCeEEEEEcCCccceeecCCCCceeecCCCCc
Q 010723 380 SQPIYLSVSHENEPYLIG-SESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFP 458 (502)
Q Consensus 380 ~~~~~l~~~~~~~~~~iG-R~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~~~i~d~~s~nGt~vn~~~~~~~~~~~~~~ 458 (502)
+..++|. .+.++|| +.++|+ |++.|+.||++|++|.+....+.+.+ +..++++||. .+.....
T Consensus 12 G~~~~L~----~g~~~iG~~~~~~d-----i~L~d~~~~~~h~~l~v~~~~~~l~~--~~~~~~~~g~-----~~~~~~g 75 (410)
T TIGR02500 12 GAELPLP----EGNLVLGTDAADCD-----IVLSDGGIAAVHVSLHVRLEGVTLAG--AVEPAWEEGG-----VLPDEEG 75 (410)
T ss_pred CcEEECC----CCceEeccCCCCcE-----EEeCCCCccchheEEEEcCceEEEec--CCcceeECCc-----ccccCCC
Confidence 3889999 4559999 888777 99999999999999999988888886 5777888883 2322233
Q ss_pred EEeCCCCEEEeCCC
Q 010723 459 ARFRPSDTIEFGSD 472 (502)
Q Consensus 459 ~~l~~gd~i~~g~~ 472 (502)
..|..+..|.+|..
T Consensus 76 ~~l~~~~~l~~g~~ 89 (410)
T TIGR02500 76 TPLPSGTPLLVAGV 89 (410)
T ss_pred CccCCCCceeccee
Confidence 45667766666655
No 74
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=96.99 E-value=0.032 Score=55.48 Aligned_cols=61 Identities=25% Similarity=0.389 Sum_probs=48.2
Q ss_pred EEEeeHHHHHHHHHhccC--CCeEecCCeEEEEEeeCCeEE-EEEccCcEEEeeEEEEecCCCch
Q 010723 22 TRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLIGADGIWSK 83 (502)
Q Consensus 22 ~~~i~R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~-v~~~dg~~~~adlvVgADG~~S~ 83 (502)
+..++=..|...|.+.+. .+.++.+++|++++.+++.+. |...+| +++||.||.|.|..|.
T Consensus 131 ~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 131 DAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAG 194 (337)
T ss_pred CceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhh
Confidence 445677788888887763 367899999999998777664 555566 8999999999999875
No 75
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms]
Probab=96.89 E-value=0.0026 Score=64.16 Aligned_cols=88 Identities=16% Similarity=0.282 Sum_probs=72.9
Q ss_pred ceEEeecCCCCCEEEcCCCCCCCCCceeee--CCccccccceEEEEe-CCeEEEEEcCCccceeecCCCCceeecCCCCc
Q 010723 382 PIYLSVSHENEPYLIGSESHEDFSRTSIVI--PSAQVSKMHARISYK-DGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFP 458 (502)
Q Consensus 382 ~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~--~~~~vSr~Ha~i~~~-~~~~~i~d~~s~nGt~vn~~~~~~~~~~~~~~ 458 (502)
.+.+. +..+++||+......++|+-. +..-|||+.+.|... +|.|+|..+| +.-.||||. +|.+|+.
T Consensus 442 kh~mr----k~EVtlGRat~d~~VDIDLgkegpatKISRRQa~IkL~n~GsF~IkNlG-K~~I~vng~-----~l~~gq~ 511 (547)
T KOG2293|consen 442 KHYMR----KKEVTLGRATGDLKVDIDLGKEGPATKISRRQALIKLKNDGSFFIKNLG-KRSILVNGG-----ELDRGQK 511 (547)
T ss_pred Hhhhc----CcceEeeccCCCcceeeeccccCccceeeccceeEEeccCCcEEeccCc-ceeEEeCCc-----cccCCce
Confidence 45566 555999999987665555544 445699999999886 8899999996 788999999 9999999
Q ss_pred EEeCCCCEEEeCCCceEEEEEEEe
Q 010723 459 ARFRPSDTIEFGSDKKAIFRVKVI 482 (502)
Q Consensus 459 ~~l~~gd~i~~g~~~~~~~~~~~~ 482 (502)
+.|+...+|+|-.- .|+|++.
T Consensus 512 ~~L~~nclveIrg~---~FiF~~N 532 (547)
T KOG2293|consen 512 VILKNNCLVEIRGL---RFIFEIN 532 (547)
T ss_pred EEeccCcEEEEccc---eEEEeec
Confidence 99999999999987 7888774
No 76
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.84 E-value=0.042 Score=60.26 Aligned_cols=62 Identities=15% Similarity=0.120 Sum_probs=51.6
Q ss_pred EEEeeHHHHHHHHHhccCC-CeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCch
Q 010723 22 TRVISRMTLQQILAKAVGD-EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 83 (502)
Q Consensus 22 ~~~i~R~~L~~~L~~~~~~-~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 83 (502)
+..++-..|.+.|.+.+.. ++++++++|++++.++++++|.+.+|..++||.||.|+|..|.
T Consensus 402 ~G~v~p~~l~~aL~~~a~~Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 402 GGWLCPAELCRALLALAGQQLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred CCeeCHHHHHHHHHHhcccCcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcc
Confidence 3446777888888887653 6688899999999888888888888888899999999999985
No 77
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=96.81 E-value=0.0039 Score=67.54 Aligned_cols=82 Identities=24% Similarity=0.440 Sum_probs=65.3
Q ss_pred eEEeecCCCCCEEEcCCCCCCCCCceeeeCCccccccceEEEEeCCe--EEEEEcCCccceeecCCCCceeecCCCCcEE
Q 010723 383 IYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGA--FYLIDLQSEHGTYVTDNEGRRYRVSSNFPAR 460 (502)
Q Consensus 383 ~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~--~~i~d~~s~nGt~vn~~~~~~~~~~~~~~~~ 460 (502)
+.|+ .+...|||.+.... -||++....|--.||.|.-+++. +.|.-+ --.-|||||+ .+. ++..
T Consensus 472 Y~ik----eG~TrVG~~~a~~~--~DI~LsG~~I~~qHC~i~~~~g~~~vtl~p~-e~aetyVNGk-----~v~--ep~q 537 (1221)
T KOG0245|consen 472 YYIK----EGETRVGREDASSR--QDIVLSGQLIREQHCSIRNEGGNDVVTLEPC-EDAETYVNGK-----LVT--EPTQ 537 (1221)
T ss_pred EEec----cCceecCCCCcccC--CceEecchhhhhhceEEEecCCCceEEeccC-CccceeEccE-----EcC--Ccce
Confidence 5666 45599999976643 45999999999999999998666 666654 3456999998 886 5889
Q ss_pred eCCCCEEEeCCCceEEEEEE
Q 010723 461 FRPSDTIEFGSDKKAIFRVK 480 (502)
Q Consensus 461 l~~gd~i~~g~~~~~~~~~~ 480 (502)
|+.||.|.||... +|+|.
T Consensus 538 L~~GdRiilG~~H--~frfn 555 (1221)
T KOG0245|consen 538 LRSGDRIILGGNH--VFRFN 555 (1221)
T ss_pred eccCCEEEEcCce--eEEec
Confidence 9999999999862 67764
No 78
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=96.63 E-value=0.12 Score=53.09 Aligned_cols=56 Identities=18% Similarity=0.171 Sum_probs=42.9
Q ss_pred HHHHHHHHhccC--CCeEecCCeEEEEEeeCCeEEEEEccC-----cEEEeeEEEEecCCCch
Q 010723 28 MTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENG-----QCYAGDLLIGADGIWSK 83 (502)
Q Consensus 28 ~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~v~~~dg-----~~~~adlvVgADG~~S~ 83 (502)
..+...|.+.+. .++++++++|++++.+++.+++.+.++ .+++||.||.|.|..|.
T Consensus 197 ~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 197 HKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChH
Confidence 456666666553 367889999999998777777765543 37999999999999985
No 79
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.58 E-value=0.063 Score=54.42 Aligned_cols=67 Identities=19% Similarity=0.297 Sum_probs=50.8
Q ss_pred eEEEeeHHHHHHHHHhccC--CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCC-chhhccc
Q 010723 21 VTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIW-SKVRKNL 88 (502)
Q Consensus 21 ~~~~i~R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~-S~vR~~l 88 (502)
.+..++-..+.+.|.+.+. .+.++.+++|++++.+++.+.|++.++ ++.||.||.|.|.. |.+++.+
T Consensus 138 ~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~ 207 (380)
T TIGR01377 138 NGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLSPL 207 (380)
T ss_pred CCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhhhc
Confidence 3456677788888877653 367889999999998888888887666 78998777777764 6777766
No 80
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=96.54 E-value=0.029 Score=56.00 Aligned_cols=64 Identities=28% Similarity=0.361 Sum_probs=53.1
Q ss_pred CeEEEeeHHHHHHHHHhccC--CCeEecCCeEEEEEeeCCeEE-EEEccCcEEEeeEEEEecCCCchh
Q 010723 20 PVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLIGADGIWSKV 84 (502)
Q Consensus 20 p~~~~i~R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~-v~~~dg~~~~adlvVgADG~~S~v 84 (502)
|.+..++-..|.+.|.+.+. .+.++.+++|++|+.++++++ |.+++|+ ++||.||-|.|.+|.-
T Consensus 139 ~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 139 PEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp TTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHH
T ss_pred cccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEeccccccee
Confidence 55777888899999988763 367999999999999999998 9999997 9999999999998754
No 81
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=96.49 E-value=0.43 Score=49.89 Aligned_cols=51 Identities=14% Similarity=0.271 Sum_probs=42.5
Q ss_pred HHHHHHHhccCCCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecC
Q 010723 29 TLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADG 79 (502)
Q Consensus 29 ~L~~~L~~~~~~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG 79 (502)
.|-+.|.+.+....++++++|++|+.+++++.|++.+|+++.||.||.|--
T Consensus 227 ~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p 277 (463)
T PRK12416 227 TIIDRLEEVLTETVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAP 277 (463)
T ss_pred HHHHHHHHhcccccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCC
Confidence 566677776654568999999999999889999988998899999998874
No 82
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=96.42 E-value=0.2 Score=50.94 Aligned_cols=64 Identities=17% Similarity=0.232 Sum_probs=53.0
Q ss_pred CeEEEeeHHHHHHHHHhccCC-CeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCch
Q 010723 20 PVTRVISRMTLQQILAKAVGD-EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 83 (502)
Q Consensus 20 p~~~~i~R~~L~~~L~~~~~~-~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 83 (502)
|....++-..+...|.+.+.. +.++++++|++++.+++++.|++.+|+.+.||.||-|.|..|.
T Consensus 127 ~~~g~idp~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 127 PQGGWLSPPQLCRALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred CCCcccChHHHHHHHHhccCCCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccc
Confidence 334566778888888887653 6788999999999888888888888988999999999999874
No 83
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=96.31 E-value=0.57 Score=48.88 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=43.1
Q ss_pred HHHHHHHhccCCCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCC
Q 010723 29 TLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIW 81 (502)
Q Consensus 29 ~L~~~L~~~~~~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~ 81 (502)
.|-+.|.+.+....++++++|+.|+.++++++|++++|+++.||.||-|=-..
T Consensus 226 ~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~ 278 (462)
T TIGR00562 226 TLPEEIEKRLKLTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHK 278 (462)
T ss_pred HHHHHHHHHhccCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHH
Confidence 45566666665456899999999999888899999888889999999887654
No 84
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=96.19 E-value=0.18 Score=50.92 Aligned_cols=58 Identities=21% Similarity=0.347 Sum_probs=43.9
Q ss_pred eeHHHHHHHHHhcc--CCCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCch
Q 010723 25 ISRMTLQQILAKAV--GDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 83 (502)
Q Consensus 25 i~R~~L~~~L~~~~--~~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 83 (502)
++-..+...|.+.+ ..+.++.+++|++++.+++++.|++++| +++||.||.|+|..|.
T Consensus 146 v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 146 LRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred EcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchh
Confidence 34344444554443 2467888999999998888888888777 7999999999999864
No 85
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=95.65 E-value=0.25 Score=50.66 Aligned_cols=64 Identities=17% Similarity=0.163 Sum_probs=45.4
Q ss_pred EeeHHHHHHHHHhccC--CCeEecCCeEEEEEee-CCeE-EEEEccCcEEEee-EEEEecCCCchhhccc
Q 010723 24 VISRMTLQQILAKAVG--DEIILNESNVIDFKDH-GDKV-SVVLENGQCYAGD-LLIGADGIWSKVRKNL 88 (502)
Q Consensus 24 ~i~R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~-~~~v-~v~~~dg~~~~ad-lvVgADG~~S~vR~~l 88 (502)
.++-..+...|.+.+. .++++.+++|++++.. ++.+ .|+..+| ++.++ +||+|+|..|.+++.+
T Consensus 179 ~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~ 247 (407)
T TIGR01373 179 TARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMA 247 (407)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHc
Confidence 4455566666766553 3678889999999754 3444 4666677 57876 6788899888888765
No 86
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=95.59 E-value=0.033 Score=60.01 Aligned_cols=96 Identities=22% Similarity=0.306 Sum_probs=74.3
Q ss_pred EEEec-CCCCCcccceEEeecCCCCCEEEcCCCCCCCCCceeeeCCccccccceEEEEeCCeEEEEEcCCccceeecCCC
Q 010723 369 FLVPS-GSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNE 447 (502)
Q Consensus 369 ~l~~~-~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~~~i~d~~s~nGt~vn~~~ 447 (502)
+|+.. .++...-..|.|. ..+.-+|.....+ ..|.|..|.|-.+||.|..-+|-++|+...--.-|||||.
T Consensus 358 vLve~s~dG~~s~~ri~L~----~~vtEVGs~~~~~---~~iqLfGP~IqprHc~it~meGVvTvTP~~~DA~t~VnGh- 429 (1629)
T KOG1892|consen 358 VLVELSPDGSDSRKRIRLQ----LSVTEVGSEKLDD---NSIQLFGPGIQPRHCDITNMEGVVTVTPRSMDAETYVNGH- 429 (1629)
T ss_pred EEEEEcCCCCCcceeEEec----cCceeccccccCC---cceeeeCCCCCccccchhhccceEEecccccchhhhccce-
Confidence 44444 3333333677777 5668899888664 3389999999999999999999999998755556999999
Q ss_pred CceeecCCCCcEEeCCCCEEEeCCCceEEEEEE
Q 010723 448 GRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVK 480 (502)
Q Consensus 448 ~~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~~ 480 (502)
+|. +...|++|+.|.||... .|+|.
T Consensus 430 ----~is--qttiL~~G~~v~fGa~h--sfkF~ 454 (1629)
T KOG1892|consen 430 ----RIS--QTTILQSGMKVQFGASH--SFKFV 454 (1629)
T ss_pred ----ecc--hhhhhccCCEEEeccce--eEEec
Confidence 887 56789999999999963 56554
No 87
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=95.55 E-value=0.072 Score=55.90 Aligned_cols=75 Identities=13% Similarity=0.118 Sum_probs=64.6
Q ss_pred cceEEeecCCCCCEEEcCCCCCCCCCceeeeCCccccccceEEEEe--CCeEEEEEcCCccceeecCCCCceeecCCCCc
Q 010723 381 QPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK--DGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFP 458 (502)
Q Consensus 381 ~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~--~~~~~i~d~~s~nGt~vn~~~~~~~~~~~~~~ 458 (502)
..|+|. .+.++|||+++.. |.|...||+...+..+ .+.+.++-|| .|.+-|||. .+.++..
T Consensus 25 ~~~~~~----~~~~~~gr~pet~-------i~d~~cs~~qv~l~a~~~~~~v~~k~lg-~np~~~~~~-----~~~~~~~ 87 (526)
T TIGR01663 25 HFIHLD----AGALFLGRGPETG-------IRDRKCSKRQIELQADLEKATVALKQLG-VNPCGTGGL-----ELKPGGE 87 (526)
T ss_pred CeeccC----CCceEEccCcccc-------cchhhhchhhheeeecccCceEEEEEcc-CCCcccCce-----EecCCCe
Confidence 566666 5669999999874 5589999999999876 6778899996 699999999 9999999
Q ss_pred EEeCCCCEEEeCCC
Q 010723 459 ARFRPSDTIEFGSD 472 (502)
Q Consensus 459 ~~l~~gd~i~~g~~ 472 (502)
..|++||.+.|=..
T Consensus 88 ~~l~~g~~l~~v~~ 101 (526)
T TIGR01663 88 GELGHGDLLEIVNG 101 (526)
T ss_pred eeecCCCEEEEecc
Confidence 99999999999875
No 88
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=95.51 E-value=0.55 Score=48.23 Aligned_cols=58 Identities=17% Similarity=0.090 Sum_probs=43.5
Q ss_pred eeHHHHHHHHHhccC--CCeEecCCeEEEEEeeCCeEE-EEEccCcEEEeeEEEEecCCCch
Q 010723 25 ISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLIGADGIWSK 83 (502)
Q Consensus 25 i~R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~-v~~~dg~~~~adlvVgADG~~S~ 83 (502)
++=..+.+.|.+.+. .++++.+++|++++.+++.+. ++..+ .+++||.||-|.|..|.
T Consensus 198 ~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~-~~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 198 GDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGG-GVITADAYVVALGSYST 258 (416)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCC-cEEeCCEEEECCCcchH
Confidence 344466777776553 367889999999988777754 55554 47999999999999884
No 89
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=95.22 E-value=0.48 Score=50.01 Aligned_cols=61 Identities=20% Similarity=0.237 Sum_probs=47.2
Q ss_pred HHHHHHHHhccC--CCeEecCCeEEEEEeeCCe-EEEEEccCcEEEeeEEEEecCCCchhhccc
Q 010723 28 MTLQQILAKAVG--DEIILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLIGADGIWSKVRKNL 88 (502)
Q Consensus 28 ~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~-v~v~~~dg~~~~adlvVgADG~~S~vR~~l 88 (502)
..|.+.|.+.+. .++++++++|++|..++++ ..|++.+|++++||.||.|=|....+++.+
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLL 292 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhC
Confidence 456666776653 3679999999999876554 457788898999999999888887777655
No 90
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=95.09 E-value=4.3 Score=42.04 Aligned_cols=54 Identities=24% Similarity=0.233 Sum_probs=42.9
Q ss_pred HHHHHHHhccCCCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCc
Q 010723 29 TLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWS 82 (502)
Q Consensus 29 ~L~~~L~~~~~~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S 82 (502)
.|.+.|.+.+....|+++++|++|+.++++++|++++|+++.||.||.|=-.+.
T Consensus 222 ~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~ 275 (451)
T PRK11883 222 SLIEALEEKLPAGTIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPV 275 (451)
T ss_pred HHHHHHHHhCcCCeEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHH
Confidence 455556665544368999999999998888999999999999999999866543
No 91
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=94.97 E-value=0.056 Score=51.63 Aligned_cols=67 Identities=24% Similarity=0.200 Sum_probs=51.6
Q ss_pred EEEeeHHHHHHHHHhccC--CCeEecCCeEEEEEeeCC-eEE-EEEc-----------cCcEEEeeEEEEecCCCchhhc
Q 010723 22 TRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGD-KVS-VVLE-----------NGQCYAGDLLIGADGIWSKVRK 86 (502)
Q Consensus 22 ~~~i~R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~-~v~-v~~~-----------dg~~~~adlvVgADG~~S~vR~ 86 (502)
.+.+++..|...|.+++. .+.++++++|+++..+++ .+. +... +..+++|++||.|+|.+|.+.+
T Consensus 98 ~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~ 177 (257)
T PRK04176 98 LYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVS 177 (257)
T ss_pred ceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHH
Confidence 467899999999998763 367899999999986555 332 2211 2247999999999999999998
Q ss_pred cc
Q 010723 87 NL 88 (502)
Q Consensus 87 ~l 88 (502)
.+
T Consensus 178 ~l 179 (257)
T PRK04176 178 VL 179 (257)
T ss_pred HH
Confidence 88
No 92
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=94.49 E-value=1.2 Score=47.20 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=46.7
Q ss_pred HHHHHHHHhccC--CCeEecCCeEEEEEeeCCe-EEEEEccCcEEEeeEEEEecCCCchhhccc
Q 010723 28 MTLQQILAKAVG--DEIILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLIGADGIWSKVRKNL 88 (502)
Q Consensus 28 ~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~-v~v~~~dg~~~~adlvVgADG~~S~vR~~l 88 (502)
..|.+.|.+.+. .++++++++|++|..++++ +.|++++|++++||.||.|=+....+...+
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLL 282 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhc
Confidence 466677776653 3679999999999877765 568888999999999998877766665544
No 93
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=94.49 E-value=0.86 Score=46.48 Aligned_cols=45 Identities=20% Similarity=0.138 Sum_probs=38.2
Q ss_pred CeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhh
Q 010723 41 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 85 (502)
Q Consensus 41 ~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR 85 (502)
..|+++++|++|+.++++|++++.||++++||.||-|=......+
T Consensus 224 ~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~ 268 (450)
T PF01593_consen 224 GEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLKN 268 (450)
T ss_dssp GGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHHT
T ss_pred ceeecCCcceeccccccccccccccceEEecceeeecCchhhhhh
Confidence 369999999999999999999999999999999998877755544
No 94
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=94.45 E-value=0.14 Score=52.36 Aligned_cols=68 Identities=22% Similarity=0.333 Sum_probs=54.1
Q ss_pred CeEEEeeHHHHHHHHHhccC--CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCch-hhccc
Q 010723 20 PVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK-VRKNL 88 (502)
Q Consensus 20 p~~~~i~R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~-vR~~l 88 (502)
|....++...+.+.|.+.+. .+.++++++|++++.+++++.|.+.+| +++||.||.|+|.+|. +.+.+
T Consensus 141 p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~ 211 (393)
T PRK11728 141 PSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMA 211 (393)
T ss_pred CCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHh
Confidence 44557788899999988763 367889999999988877788887776 7999999999999984 44433
No 95
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=94.33 E-value=0.099 Score=47.72 Aligned_cols=61 Identities=21% Similarity=0.217 Sum_probs=44.4
Q ss_pred eeHHHHHHHHHhccC--CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhh
Q 010723 25 ISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 85 (502)
Q Consensus 25 i~R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR 85 (502)
..+..+.+.|.+-+. ...++++++|++++.++++++|+++++++++|+.||.|-|..|.=+
T Consensus 79 ~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~ 141 (203)
T PF13738_consen 79 PSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPR 141 (203)
T ss_dssp EBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB-
T ss_pred CCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCC
Confidence 667777777766553 2348999999999999999999999998999999999999876633
No 96
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=94.09 E-value=3.4 Score=41.49 Aligned_cols=231 Identities=14% Similarity=0.071 Sum_probs=126.0
Q ss_pred EEEeeHHHHHHHHHhccCC--CeEecCCeEEEEEeeCCe-EE-E---------------EEccCcEEEeeEEEEecCCCc
Q 010723 22 TRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDK-VS-V---------------VLENGQCYAGDLLIGADGIWS 82 (502)
Q Consensus 22 ~~~i~R~~L~~~L~~~~~~--~~v~~~~~v~~i~~~~~~-v~-v---------------~~~dg~~~~adlvVgADG~~S 82 (502)
-|+++-..|.+.|-+++.. ++|+-+..+.++-.++++ |. | +|+.|-++.|+.-|-|.|.|.
T Consensus 177 NYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G 256 (621)
T KOG2415|consen 177 NYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHG 256 (621)
T ss_pred cEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccc
Confidence 5899999999999988754 456666666666555433 22 2 233344689999999999998
Q ss_pred hhhcccc---CCCCCcccceEE--EEEEecCCCCCccccceEEEec--------CceEEEEEeCCCCeEEE--EEEEcCC
Q 010723 83 KVRKNLF---GPQEAIYSGYTC--YTGIADFVPADIESVGYRVFLG--------HKQYFVSSDVGAGKMQW--YAFHKEP 147 (502)
Q Consensus 83 ~vR~~l~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~p~~~~~~~~--~~~~~~~ 147 (502)
.+-++++ ...+..-.+.+. +-.+....+..+.+......++ .|.+ +|.+++..+.. ++....+
T Consensus 257 ~Lskqi~kkf~Lr~n~e~qtYglGlKEvWei~~~~~~pG~v~HT~GwPl~~~tYGGsF--lYh~~d~~VavGlVVgLdY~ 334 (621)
T KOG2415|consen 257 SLSKQIIKKFDLRENCEPQTYGLGLKEVWEIDPENHNPGEVAHTLGWPLDNDTYGGSF--LYHFNDPLVAVGLVVGLDYK 334 (621)
T ss_pred hhHHHHHHHhCcccCCCcceeccccceeEecChhhcCCcceeeeccCcccCCccCcee--EEEcCCCeEEEEEEEEecCC
Confidence 8888873 222111111111 1111111122222211111111 1112 22334443332 2222221
Q ss_pred CCCCCCCcchHHHHHHHhhCCChHHHHHHHcCCccceeeeecccC--CCCCcccCCCEEEEcCCccccCCCchhhhhHHH
Q 010723 148 AGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDR--TPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAI 225 (502)
Q Consensus 148 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al 225 (502)
... -.+..+++++ .-+|.+.+.++.......-.+.+..- ...+..+-++=+|||=+|..|+-----|.-.||
T Consensus 335 NP~----lsP~~EFQk~--K~hP~i~~vleGgk~i~YgARaLNEGGfQsiPkl~FPGG~liGcSaGFlNVpKIKGTHtAM 408 (621)
T KOG2415|consen 335 NPY----LSPYKEFQKM--KHHPSISKVLEGGKRIAYGARALNEGGFQSIPKLVFPGGALIGCSAGFLNVPKIKGTHTAM 408 (621)
T ss_pred CCC----CCHHHHHHHh--hcCcchhhhhcCcceeeehhhhhccCCcccCcccccCCceEeecccccccccccccchhhh
Confidence 111 1223344332 12566777766555433333333221 223355666779999999999977888999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCChhhHHHH--HHHHHHHhHHH
Q 010723 226 EDGYQLAVELEKACKKSNESKTPIDIVSA--LKSYERARRLR 265 (502)
Q Consensus 226 ~Da~~La~~L~~~~~~~~~~~~~~~~~~~--L~~Y~~~R~~~ 265 (502)
.++...|+.+-+++++... ..... +..|++.-+..
T Consensus 409 KSGmlAAesif~ai~~~~~-----~k~~~~~~~~Ye~nlkds 445 (621)
T KOG2415|consen 409 KSGMLAAESIFEAIKGLPQ-----SKMAGLDPTTYEENLKDS 445 (621)
T ss_pred hcchhHHHHHHHHHhcCcc-----ccccccChhhHHHhhhhh
Confidence 9999999999998876310 10111 45888765543
No 97
>PLN02612 phytoene desaturase
Probab=93.98 E-value=1.6 Score=46.91 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=39.1
Q ss_pred HHHHHHHhcc--CCCeEecCCeEEEEEeeCCe--EEEEEccCcEEEeeEEEEecCC
Q 010723 29 TLQQILAKAV--GDEIILNESNVIDFKDHGDK--VSVVLENGQCYAGDLLIGADGI 80 (502)
Q Consensus 29 ~L~~~L~~~~--~~~~v~~~~~v~~i~~~~~~--v~v~~~dg~~~~adlvVgADG~ 80 (502)
.|.+.|.+.+ ...+|+++++|++|+.++++ +.+++.+|++++||.||-|...
T Consensus 309 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 309 RLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence 3555665543 23679999999999986555 3477788999999999999765
No 98
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=93.96 E-value=0.15 Score=48.63 Aligned_cols=66 Identities=20% Similarity=0.202 Sum_probs=50.7
Q ss_pred EEeeHHHHHHHHHhccC--CCeEecCCeEEEEEeeCC--eEE-EEEc-----------cCcEEEeeEEEEecCCCchhhc
Q 010723 23 RVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGD--KVS-VVLE-----------NGQCYAGDLLIGADGIWSKVRK 86 (502)
Q Consensus 23 ~~i~R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~--~v~-v~~~-----------dg~~~~adlvVgADG~~S~vR~ 86 (502)
+..++..+.+.|.+++. .++++.+++|.++..+++ .+. |... +..+++|++||.|+|..|.+.+
T Consensus 95 ~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~ 174 (254)
T TIGR00292 95 VVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVA 174 (254)
T ss_pred EEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHH
Confidence 45689999999988763 367899999999987666 222 2222 2247899999999999999998
Q ss_pred cc
Q 010723 87 NL 88 (502)
Q Consensus 87 ~l 88 (502)
.+
T Consensus 175 ~l 176 (254)
T TIGR00292 175 VC 176 (254)
T ss_pred HH
Confidence 87
No 99
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.90 E-value=2.1 Score=45.21 Aligned_cols=65 Identities=17% Similarity=0.248 Sum_probs=48.3
Q ss_pred EeeHHHHHHHHHhcc--CCCeEecCCeEEEEEeeCCeEEEEEccC----cEEEeeEEEEecCCCch-hhccc
Q 010723 24 VISRMTLQQILAKAV--GDEIILNESNVIDFKDHGDKVSVVLENG----QCYAGDLLIGADGIWSK-VRKNL 88 (502)
Q Consensus 24 ~i~R~~L~~~L~~~~--~~~~v~~~~~v~~i~~~~~~v~v~~~dg----~~~~adlvVgADG~~S~-vR~~l 88 (502)
.++-..|...|...+ ..+.++.+++|+++..+++.+.|++.++ .+++|++||.|+|..|. +.+.+
T Consensus 151 ~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~ 222 (502)
T PRK13369 151 WVDDARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVTDVIHRV 222 (502)
T ss_pred eecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhc
Confidence 356677776676554 2367889999999998877777777664 36899999999999874 44434
No 100
>PRK07233 hypothetical protein; Provisional
Probab=93.56 E-value=2.7 Score=43.21 Aligned_cols=54 Identities=24% Similarity=0.093 Sum_probs=42.2
Q ss_pred HHHHHHHhccC--CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCc
Q 010723 29 TLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWS 82 (502)
Q Consensus 29 ~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S 82 (502)
.|.+.|.+.+. ...++++++|++|+.+++++++...++++++||.||.|=..+.
T Consensus 199 ~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~ 254 (434)
T PRK07233 199 TLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPPI 254 (434)
T ss_pred HHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHHH
Confidence 46666666653 3579999999999988887776667788999999998887653
No 101
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=92.42 E-value=0.45 Score=50.09 Aligned_cols=70 Identities=13% Similarity=0.095 Sum_probs=51.3
Q ss_pred CCeEEEeeHHHHHHHHHhccCC---CeEecCCeEEEEEeeCCe-EEEEEc---cCc--EEEeeEEEEecCCC-chhhccc
Q 010723 19 LPVTRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDK-VSVVLE---NGQ--CYAGDLLIGADGIW-SKVRKNL 88 (502)
Q Consensus 19 ~p~~~~i~R~~L~~~L~~~~~~---~~v~~~~~v~~i~~~~~~-v~v~~~---dg~--~~~adlvVgADG~~-S~vR~~l 88 (502)
.|.+..++-..+.+.|.+.+.. ++++++++|++++.++++ +.+++. +|+ +++|++||.|.|.+ +.+++.+
T Consensus 174 ~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~ 253 (494)
T PRK05257 174 IEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKS 253 (494)
T ss_pred cCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHc
Confidence 3557789999999999887642 578999999999986554 666653 353 68999887666655 4566655
No 102
>PLN02568 polyamine oxidase
Probab=92.40 E-value=0.41 Score=50.95 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=44.8
Q ss_pred HHHHHHHhccCCCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecC
Q 010723 29 TLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADG 79 (502)
Q Consensus 29 ~L~~~L~~~~~~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG 79 (502)
.|.+.|.+.++...|+++++|+.|+.++++|+|++++|++++||.||.+=-
T Consensus 243 ~Li~~La~~L~~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvP 293 (539)
T PLN02568 243 SVIEALASVLPPGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVS 293 (539)
T ss_pred HHHHHHHhhCCCCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCC
Confidence 478888888865569999999999999999999999999999999998754
No 103
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=92.12 E-value=0.38 Score=47.94 Aligned_cols=56 Identities=21% Similarity=0.136 Sum_probs=48.8
Q ss_pred HHHHHHHHhccC--CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCch
Q 010723 28 MTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 83 (502)
Q Consensus 28 ~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 83 (502)
..+.++|..++. +++++.+++|.+++.++.+.++.+.+|++++||-||-|-|..|.
T Consensus 111 ~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~S~ 168 (408)
T COG2081 111 SPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGKSW 168 (408)
T ss_pred HHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCCcCC
Confidence 567777777764 47899999999999998889999999999999999999998874
No 104
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=91.91 E-value=5.3 Score=40.76 Aligned_cols=53 Identities=8% Similarity=0.084 Sum_probs=38.7
Q ss_pred HHHHHHhccC--CCeEecCCeEEEEEeeCCeEEEEE-ccCcEEEeeEEEEecCCCc
Q 010723 30 LQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVL-ENGQCYAGDLLIGADGIWS 82 (502)
Q Consensus 30 L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~v~~-~dg~~~~adlvVgADG~~S 82 (502)
+.+.|.+.+. ...|+++++|++|+.+++++++.. .+|+++.||.||.|--...
T Consensus 199 ~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~ 254 (419)
T TIGR03467 199 FPEPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPRH 254 (419)
T ss_pred HHHHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHHH
Confidence 3344555442 357999999999999888876654 3678899999999866543
No 105
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=91.53 E-value=6.2 Score=41.80 Aligned_cols=59 Identities=24% Similarity=0.376 Sum_probs=43.4
Q ss_pred eeHHHHHHHHHhcc--CCCeEecCCeEEEEEeeCCeEEEEEcc---Cc--EEEeeEEEEecCCCch
Q 010723 25 ISRMTLQQILAKAV--GDEIILNESNVIDFKDHGDKVSVVLEN---GQ--CYAGDLLIGADGIWSK 83 (502)
Q Consensus 25 i~R~~L~~~L~~~~--~~~~v~~~~~v~~i~~~~~~v~v~~~d---g~--~~~adlvVgADG~~S~ 83 (502)
++-..|...|...+ ..+.++.+++|+++..+++.+.+++.+ |+ +++|+.||.|.|..|.
T Consensus 152 vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 152 VDDARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred cCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 44455555555443 236788899999998877777777654 53 7899999999999873
No 106
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=91.51 E-value=0.66 Score=47.38 Aligned_cols=65 Identities=17% Similarity=0.292 Sum_probs=53.2
Q ss_pred CeEEEeeHHHHHHHHHhccC--CCeEecCCeEEEEEeeCCe-EEEEEccCcE-EEeeEEEEecCCCchh
Q 010723 20 PVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDK-VSVVLENGQC-YAGDLLIGADGIWSKV 84 (502)
Q Consensus 20 p~~~~i~R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~-v~v~~~dg~~-~~adlvVgADG~~S~v 84 (502)
|.+..++-..+-..|.+.+. +..++++++|++|+..+++ ..+.+.+|++ ++|++||-|=|..|--
T Consensus 145 p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~ 213 (429)
T COG0579 145 PSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADP 213 (429)
T ss_pred CCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHH
Confidence 55677888888888887763 4789999999999998884 5577788876 9999999999998853
No 107
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=91.49 E-value=4.9 Score=42.33 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=37.7
Q ss_pred HHHHHHHHhccC--CCeEecCCeEEEEEeeCCeE-EEEEccC-----cEEEeeEEEEecCCC
Q 010723 28 MTLQQILAKAVG--DEIILNESNVIDFKDHGDKV-SVVLENG-----QCYAGDLLIGADGIW 81 (502)
Q Consensus 28 ~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v-~v~~~dg-----~~~~adlvVgADG~~ 81 (502)
..|-+.|.+.+. ..+|+++++|++|..+++.+ .+.+.++ +++.||.||.+=..+
T Consensus 232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 356677777663 46799999999999877643 2444444 578999888775543
No 108
>PLN02976 amine oxidase
Probab=91.30 E-value=38 Score=40.32 Aligned_cols=47 Identities=26% Similarity=0.249 Sum_probs=37.3
Q ss_pred HHHHHHHhccCCCeEecCCeEEEEEee----------CCeEEEEEccCcEEEeeEEEEec
Q 010723 29 TLQQILAKAVGDEIILNESNVIDFKDH----------GDKVSVVLENGQCYAGDLLIGAD 78 (502)
Q Consensus 29 ~L~~~L~~~~~~~~v~~~~~v~~i~~~----------~~~v~v~~~dg~~~~adlvVgAD 78 (502)
.|.+.|.+.+ .|++++.|+.|... +++|+|++.+|+++.||.||.+=
T Consensus 937 qLIeALAe~L---~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTV 993 (1713)
T PLN02976 937 NVVESLAEGL---DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITV 993 (1713)
T ss_pred HHHHHHHhhC---CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeC
Confidence 4555555554 38999999999874 46799999999999999999764
No 109
>PLN02676 polyamine oxidase
Probab=89.70 E-value=0.93 Score=47.69 Aligned_cols=56 Identities=20% Similarity=0.155 Sum_probs=45.7
Q ss_pred HHHHHHHHhccC--------CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCch
Q 010723 28 MTLQQILAKAVG--------DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 83 (502)
Q Consensus 28 ~~L~~~L~~~~~--------~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 83 (502)
..|-+.|.+.+. ...|+++++|++|+.++++|+|++.+|++++||.||.|...+..
T Consensus 224 ~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~vL 287 (487)
T PLN02676 224 ESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVL 287 (487)
T ss_pred HHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHHh
Confidence 355666666542 24589999999999999999999999999999999999987544
No 110
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=89.66 E-value=0.91 Score=49.51 Aligned_cols=75 Identities=25% Similarity=0.403 Sum_probs=60.7
Q ss_pred CCEEEcCCCCCCCCCceeeeCCccccccceEEEEe-CCeEEEEEcCCccceeecCCCCceeecCCCCcEEeCCCCEEEeC
Q 010723 392 EPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK-DGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFG 470 (502)
Q Consensus 392 ~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~-~~~~~i~d~~s~nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g 470 (502)
...+||-....+ |++..-.|-+.||+|..+ ++.+++..+.+. -++|||. .+. ++..|.+||.|..|
T Consensus 467 ~~tlig~~~~~~-----i~l~glgi~p~h~vidI~~dg~l~~~p~~~~-R~~VNGs-----~v~--~~t~L~~GdRiLwG 533 (1714)
T KOG0241|consen 467 DHTLIGLFKSQD-----IQLSGLGIQPKHCVIDIESDGELRLTPLLNA-RSCVNGS-----LVC--STTQLWHGDRILWG 533 (1714)
T ss_pred CceeeccccCcc-----eeeecCcccCccceeeeccCCcEEecccccc-eeeecCc-----eec--cccccccCceEEec
Confidence 347889766666 999999999999999887 677998888665 8999998 665 56889999999999
Q ss_pred CCceEEEEEEE
Q 010723 471 SDKKAIFRVKV 481 (502)
Q Consensus 471 ~~~~~~~~~~~ 481 (502)
... .|++..
T Consensus 534 nnH--FFrvN~ 542 (1714)
T KOG0241|consen 534 NNH--FFRVNL 542 (1714)
T ss_pred ccc--eEEecC
Confidence 972 466554
No 111
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=89.35 E-value=0.93 Score=45.94 Aligned_cols=44 Identities=18% Similarity=0.324 Sum_probs=38.4
Q ss_pred CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCch
Q 010723 40 DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 83 (502)
Q Consensus 40 ~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 83 (502)
.+.+++++++++++.+++.+.+++.+|+++.+|+||.|.|..+.
T Consensus 197 gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~ 240 (377)
T PRK04965 197 GVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPN 240 (377)
T ss_pred CCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcc
Confidence 36788899999998877778888999999999999999998664
No 112
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=88.76 E-value=1.1 Score=45.82 Aligned_cols=55 Identities=25% Similarity=0.255 Sum_probs=43.8
Q ss_pred HHHHHHHHHhccC--CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCc
Q 010723 27 RMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWS 82 (502)
Q Consensus 27 R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S 82 (502)
...+.+.|.+.+. .+.++++++|++++.+++.+.+++ ++.++.+|.||.|+|..|
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCcc
Confidence 3566777776653 367899999999988777777776 566899999999999988
No 113
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=88.53 E-value=0.97 Score=46.26 Aligned_cols=58 Identities=22% Similarity=0.189 Sum_probs=39.7
Q ss_pred eHHHHHHHHHhccC--CCeEecCCeEEEEEeeCCe-EEEEEccCcEEEeeEEEEecCCCch
Q 010723 26 SRMTLQQILAKAVG--DEIILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLIGADGIWSK 83 (502)
Q Consensus 26 ~R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~-v~v~~~dg~~~~adlvVgADG~~S~ 83 (502)
.-..+.++|.+.+. .+.++++++|.+++.++++ ..|.++++.++.||-||-|-|..|.
T Consensus 107 ~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 107 KASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKSY 167 (409)
T ss_dssp -HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SSS
T ss_pred cHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCCc
Confidence 34566777777664 3689999999999988877 7788878889999999999998874
No 114
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=88.20 E-value=1.7 Score=45.73 Aligned_cols=69 Identities=14% Similarity=0.133 Sum_probs=51.8
Q ss_pred CeEEEeeHHHHHHHHHhccC---CCeEecCCeEEEEEee-CCeEEEEE---ccCc--EEEeeEEEEecCCCc-hhhccc
Q 010723 20 PVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDH-GDKVSVVL---ENGQ--CYAGDLLIGADGIWS-KVRKNL 88 (502)
Q Consensus 20 p~~~~i~R~~L~~~L~~~~~---~~~v~~~~~v~~i~~~-~~~v~v~~---~dg~--~~~adlvVgADG~~S-~vR~~l 88 (502)
|.+..|+...|.+.|.+.+. .++++++++|++++.+ ++++++++ .+++ +++||+||-|=|..| .+.+.+
T Consensus 176 p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~ 254 (497)
T PRK13339 176 DEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKS 254 (497)
T ss_pred CCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHc
Confidence 55778999999999988762 3678999999999877 66677663 3443 689999977777666 455555
No 115
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=88.14 E-value=2.1 Score=43.32 Aligned_cols=61 Identities=20% Similarity=0.334 Sum_probs=47.4
Q ss_pred CeEEEeeHHHHHHHHHhccC---CCeEecCCeEEEEEeeCCeEE-EEEccCcEEEeeEEEEecCCC
Q 010723 20 PVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLIGADGIW 81 (502)
Q Consensus 20 p~~~~i~R~~L~~~L~~~~~---~~~v~~~~~v~~i~~~~~~v~-v~~~dg~~~~adlvVgADG~~ 81 (502)
...+.++|..+.+.+.+.+. +..++ ..+|+++..+++.|. |.+.+|+.+.+|.||.|+|..
T Consensus 87 a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGtf 151 (392)
T PF01134_consen 87 ALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGTF 151 (392)
T ss_dssp EEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTTG
T ss_pred chHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEecccc
Confidence 34569999999999998773 35554 578999988777765 888999999999999999993
No 116
>PLN02576 protoporphyrinogen oxidase
Probab=87.80 E-value=39 Score=35.50 Aligned_cols=50 Identities=20% Similarity=0.330 Sum_probs=37.7
Q ss_pred HHHHHHHhccCCCeEecCCeEEEEEeeCCe-EEEEEc--cCc-EEEeeEEEEec
Q 010723 29 TLQQILAKAVGDEIILNESNVIDFKDHGDK-VSVVLE--NGQ-CYAGDLLIGAD 78 (502)
Q Consensus 29 ~L~~~L~~~~~~~~v~~~~~v~~i~~~~~~-v~v~~~--dg~-~~~adlvVgAD 78 (502)
.|-+.|.+.++...++++++|+.|+.++++ +.|++. +|+ ++.||.||-|=
T Consensus 240 ~L~~~la~~l~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~ 293 (496)
T PLN02576 240 TLPDALAKRLGKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTA 293 (496)
T ss_pred HHHHHHHHhhCcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECC
Confidence 466677776653468999999999988776 666654 453 69999999875
No 117
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=87.38 E-value=2.7 Score=36.65 Aligned_cols=59 Identities=20% Similarity=0.254 Sum_probs=45.5
Q ss_pred EEEeeHHHHHHHHHhcc-------CC-C-eEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCC
Q 010723 22 TRVISRMTLQQILAKAV-------GD-E-IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGI 80 (502)
Q Consensus 22 ~~~i~R~~L~~~L~~~~-------~~-~-~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~ 80 (502)
.-.++|..+-+.|.+.+ +. + ..+...+|+++...+++..+++++|..+.+|.||-|-|.
T Consensus 88 ~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 88 DDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 44677777777776543 21 1 233467999999999999999999999999999999984
No 118
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=87.36 E-value=1.7 Score=45.71 Aligned_cols=65 Identities=9% Similarity=0.119 Sum_probs=49.6
Q ss_pred EEeeHHHHHHHHHhccCC--------CeEecCCeEEEEEee-CCeEEEEEccCcEEEeeEEEEecCCCch-hhccc
Q 010723 23 RVISRMTLQQILAKAVGD--------EIILNESNVIDFKDH-GDKVSVVLENGQCYAGDLLIGADGIWSK-VRKNL 88 (502)
Q Consensus 23 ~~i~R~~L~~~L~~~~~~--------~~v~~~~~v~~i~~~-~~~v~v~~~dg~~~~adlvVgADG~~S~-vR~~l 88 (502)
-.++-..|.+.|.+.+.. +.++++++|++|+.+ ++.+.|+..+| +++||.||-|-|.+|. +-+.+
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~ 280 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKM 280 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHh
Confidence 467777888888776532 458899999999987 44567877777 6999999999999985 44433
No 119
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=86.99 E-value=1.7 Score=45.28 Aligned_cols=57 Identities=21% Similarity=0.235 Sum_probs=44.7
Q ss_pred HHHHHHhcc--CCCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhhc
Q 010723 30 LQQILAKAV--GDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRK 86 (502)
Q Consensus 30 L~~~L~~~~--~~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~ 86 (502)
+.+.|.+.+ ..+.++.+++|++++.+++++.+++.+|+++++|.||.|.|....+..
T Consensus 218 ~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 276 (461)
T PRK05249 218 ISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDG 276 (461)
T ss_pred HHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccccC
Confidence 344444444 236788999999998777788888888889999999999999877653
No 120
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=86.90 E-value=15 Score=40.03 Aligned_cols=65 Identities=18% Similarity=0.279 Sum_probs=45.9
Q ss_pred EeeHHHHHHHHHhccC--CCeEecCCeEEEEEeeC--CeEE-EEE---ccCc--EEEeeEEEEecCCCch-hhccc
Q 010723 24 VISRMTLQQILAKAVG--DEIILNESNVIDFKDHG--DKVS-VVL---ENGQ--CYAGDLLIGADGIWSK-VRKNL 88 (502)
Q Consensus 24 ~i~R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~--~~v~-v~~---~dg~--~~~adlvVgADG~~S~-vR~~l 88 (502)
.++=..|...|.+.+. .+.++.+++|+++..++ +.+. |++ .+++ +++||.||.|.|..|. +++.+
T Consensus 228 ~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~ 303 (627)
T PLN02464 228 QMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMA 303 (627)
T ss_pred EEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhc
Confidence 3566677777777663 36788889999998763 4332 343 2344 6899999999999985 66654
No 121
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=86.86 E-value=1.7 Score=46.21 Aligned_cols=57 Identities=23% Similarity=0.211 Sum_probs=46.3
Q ss_pred eHHHHHHHHHhccC--CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCc
Q 010723 26 SRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWS 82 (502)
Q Consensus 26 ~R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S 82 (502)
.-..|.+.|.+.+. +..++++++|+++...++...+++.+|+++++|.||.|+|.++
T Consensus 264 ~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 264 EGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARW 322 (517)
T ss_pred CHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCc
Confidence 34567777776653 3668889999999987778888888898999999999999976
No 122
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=86.63 E-value=1.6 Score=45.96 Aligned_cols=69 Identities=14% Similarity=0.121 Sum_probs=50.7
Q ss_pred CeEEEeeHHHHHHHHHhccC--CCeEecCCeEEEEEeeC-CeEEEEEc---cC--cEEEeeEE-EEecCCCchhhccc
Q 010723 20 PVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHG-DKVSVVLE---NG--QCYAGDLL-IGADGIWSKVRKNL 88 (502)
Q Consensus 20 p~~~~i~R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~-~~v~v~~~---dg--~~~~adlv-VgADG~~S~vR~~l 88 (502)
|.+..++-..|.+.|.+.+. .+.++++++|++++.++ +.+.++.. +| .+++||+| ++|+|-.+.+++.+
T Consensus 170 p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~ 247 (483)
T TIGR01320 170 AEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKS 247 (483)
T ss_pred CCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHc
Confidence 55667888899999988764 46799999999998865 45666543 34 26899988 55666666787766
No 123
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=86.41 E-value=1.8 Score=46.30 Aligned_cols=59 Identities=14% Similarity=0.217 Sum_probs=45.5
Q ss_pred EeeHHHHHHHHHhccC---CCeEecCCeEEEEEeeCCeEE-EEEccCcEEEeeEEEEecCCCch
Q 010723 24 VISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLIGADGIWSK 83 (502)
Q Consensus 24 ~i~R~~L~~~L~~~~~---~~~v~~~~~v~~i~~~~~~v~-v~~~dg~~~~adlvVgADG~~S~ 83 (502)
.++|..+.+.|.+.+. +..+ +..+|+++..+++.+. |.+.+|..+.|+.||.|+|..+.
T Consensus 96 QiDr~ly~kaL~e~L~~~~nV~I-~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTFL~ 158 (618)
T PRK05192 96 QADRKLYRAAMREILENQPNLDL-FQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTFLR 158 (618)
T ss_pred hcCHHHHHHHHHHHHHcCCCcEE-EEeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcchh
Confidence 5778888888877653 3445 4567888887776655 78889999999999999998663
No 124
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=85.84 E-value=29 Score=36.42 Aligned_cols=33 Identities=18% Similarity=0.006 Sum_probs=27.5
Q ss_pred CCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHH
Q 010723 200 RGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVEL 235 (502)
Q Consensus 200 ~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L 235 (502)
..+++|+||--.+-.| .+|+-|++.+...|+.+
T Consensus 441 ~~~l~lAGD~t~~~~p---as~egAv~sG~~aA~~i 473 (474)
T TIGR02732 441 ISNFFLAGSYTQQDYI---DSMEGATLSGRQAAAAI 473 (474)
T ss_pred CCCeEEeccccccCch---HHHhHHHHHHHHHHHHh
Confidence 3799999999887777 48999999998888765
No 125
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=84.71 E-value=2.5 Score=32.00 Aligned_cols=27 Identities=30% Similarity=0.508 Sum_probs=24.0
Q ss_pred CCeEecCCeEEEEEeeCCeEEEEEccC
Q 010723 40 DEIILNESNVIDFKDHGDKVSVVLENG 66 (502)
Q Consensus 40 ~~~v~~~~~v~~i~~~~~~v~v~~~dg 66 (502)
++.+++++++++++.++++++|+++||
T Consensus 54 gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 54 GVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp TEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 577999999999999988888999886
No 126
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=83.28 E-value=3.2 Score=42.26 Aligned_cols=37 Identities=24% Similarity=0.299 Sum_probs=33.5
Q ss_pred eEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEec
Q 010723 42 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGAD 78 (502)
Q Consensus 42 ~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgAD 78 (502)
.|..+.+|..|.+++++|+|++.+..++.+|++|.+=
T Consensus 222 ~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~ti 258 (450)
T COG1231 222 RILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTI 258 (450)
T ss_pred eEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEec
Confidence 4778899999999999999999997789999999874
No 127
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=82.95 E-value=3.2 Score=40.19 Aligned_cols=54 Identities=19% Similarity=0.189 Sum_probs=41.7
Q ss_pred HHHHHHHHhccC--CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCc
Q 010723 28 MTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWS 82 (502)
Q Consensus 28 ~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S 82 (502)
..+...|.+.+. ...+++ ++|++++.+++.+.+++.++.++++|.||.|.|...
T Consensus 57 ~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 57 PELMEKMKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASA 112 (300)
T ss_pred HHHHHHHHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCc
Confidence 455556655442 255666 789999988788888888888999999999999864
No 128
>PRK09897 hypothetical protein; Provisional
Probab=82.94 E-value=3.7 Score=43.61 Aligned_cols=40 Identities=18% Similarity=0.115 Sum_probs=34.4
Q ss_pred CeEecCCeEEEEEeeCCeEEEEEcc-CcEEEeeEEEEecCC
Q 010723 41 EIILNESNVIDFKDHGDKVSVVLEN-GQCYAGDLLIGADGI 80 (502)
Q Consensus 41 ~~v~~~~~v~~i~~~~~~v~v~~~d-g~~~~adlvVgADG~ 80 (502)
+.++.+++|++++.+++++.+++.+ |..+.+|.||.|+|.
T Consensus 124 V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 124 VAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred EEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCC
Confidence 4567788999999988899998866 478999999999996
No 129
>PLN02268 probable polyamine oxidase
Probab=82.66 E-value=3.2 Score=42.90 Aligned_cols=40 Identities=23% Similarity=0.185 Sum_probs=35.7
Q ss_pred CeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCC
Q 010723 41 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGI 80 (502)
Q Consensus 41 ~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~ 80 (502)
..++++++|++|+.++++++|++.+|+++.||.||.|--.
T Consensus 211 ~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~ 250 (435)
T PLN02268 211 LDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPL 250 (435)
T ss_pred CceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCH
Confidence 3589999999999998999999999989999999999744
No 130
>PRK06116 glutathione reductase; Validated
Probab=82.63 E-value=3.5 Score=42.87 Aligned_cols=56 Identities=18% Similarity=0.222 Sum_probs=42.4
Q ss_pred HHHHHHhcc--CCCeEecCCeEEEEEeeCCe-EEEEEccCcEEEeeEEEEecCCCchhh
Q 010723 30 LQQILAKAV--GDEIILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLIGADGIWSKVR 85 (502)
Q Consensus 30 L~~~L~~~~--~~~~v~~~~~v~~i~~~~~~-v~v~~~dg~~~~adlvVgADG~~S~vR 85 (502)
+.+.|.+.+ ..+.++++++|.+++.++++ +.+.+.+|+++.+|.||.|-|....+.
T Consensus 210 ~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~ 268 (450)
T PRK06116 210 IRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTD 268 (450)
T ss_pred HHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCC
Confidence 334444443 23678999999999876555 778888999999999999999876544
No 131
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=82.26 E-value=4 Score=44.00 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=42.6
Q ss_pred HHHHHHHhcc---CCCeEecCCeEEEEEeeCCeEE----EEEccCc--EEEeeEEEEecCCCchhh
Q 010723 29 TLQQILAKAV---GDEIILNESNVIDFKDHGDKVS----VVLENGQ--CYAGDLLIGADGIWSKVR 85 (502)
Q Consensus 29 ~L~~~L~~~~---~~~~v~~~~~v~~i~~~~~~v~----v~~~dg~--~~~adlvVgADG~~S~vR 85 (502)
.|...|.+++ +++.++.++.++++..+++.+. +...+|+ .+.|+.||.|+|..|.+-
T Consensus 134 ~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l~ 199 (582)
T PRK09231 134 HMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVY 199 (582)
T ss_pred HHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCCC
Confidence 5677777655 2467888999999987766543 2345663 689999999999999764
No 132
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=81.05 E-value=4.1 Score=41.56 Aligned_cols=44 Identities=27% Similarity=0.381 Sum_probs=37.0
Q ss_pred CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchh
Q 010723 40 DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 84 (502)
Q Consensus 40 ~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 84 (502)
.+.+++++++++++. ++.+.+++.+|+++.+|+||.|-|.....
T Consensus 200 GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~ 243 (396)
T PRK09754 200 GVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGISAND 243 (396)
T ss_pred CCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCChhh
Confidence 467899999999976 55677888999999999999999987653
No 133
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=80.65 E-value=4.5 Score=42.92 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=44.2
Q ss_pred HHHHHHHHHhccC--CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCc
Q 010723 27 RMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWS 82 (502)
Q Consensus 27 R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S 82 (502)
...|.+.|.+.+. ++.++.+++|++++.+++.+.+++++|+++.+|.||.|.|++.
T Consensus 266 ~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 266 GSQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARW 323 (515)
T ss_pred HHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 4456666655542 3668889999999887777888888898999999999999863
No 134
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=80.39 E-value=4.6 Score=42.16 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=46.0
Q ss_pred EEEeeHHHHHHHHHhccC--CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCch
Q 010723 22 TRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 83 (502)
Q Consensus 22 ~~~i~R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 83 (502)
+..++=..|.+.|.+.+. .+.++.+++|++++. ++.+.|++.+| +++||.||.|-|..|.
T Consensus 177 ~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 177 AASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred CeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccccc
Confidence 345677788888887663 367899999999975 44566777766 6999999999998864
No 135
>PRK07846 mycothione reductase; Reviewed
Probab=79.27 E-value=6.1 Score=41.16 Aligned_cols=46 Identities=22% Similarity=0.272 Sum_probs=39.2
Q ss_pred CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhh
Q 010723 40 DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 85 (502)
Q Consensus 40 ~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR 85 (502)
.+.++.++++++++.+++++.+++.+|+++.+|.||.|-|....+-
T Consensus 220 ~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~ 265 (451)
T PRK07846 220 RWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGD 265 (451)
T ss_pred CeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCcc
Confidence 3668899999999877777888888899999999999999977653
No 136
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=79.01 E-value=56 Score=32.79 Aligned_cols=64 Identities=23% Similarity=0.310 Sum_probs=46.1
Q ss_pred EEEeeHHHHHHHHHhccCC---CeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhhc
Q 010723 22 TRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRK 86 (502)
Q Consensus 22 ~~~i~R~~L~~~L~~~~~~---~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~ 86 (502)
...++-..+.+.|.+.+.. ..+..++.+..++.+.+.+.|...+|+ +.|+-||-|-|..|..--
T Consensus 150 ~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~~l~ 216 (387)
T COG0665 150 GGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAGELA 216 (387)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHHHHH
Confidence 3345556777777776532 456778899888874345677777777 999999999999887543
No 137
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=78.13 E-value=6.5 Score=41.12 Aligned_cols=56 Identities=21% Similarity=0.293 Sum_probs=43.6
Q ss_pred HHHHHHhcc--CCCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhh
Q 010723 30 LQQILAKAV--GDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 85 (502)
Q Consensus 30 L~~~L~~~~--~~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR 85 (502)
+...|.+.+ ..+.++.++++++++.+++++.+.+.+|+++.+|.||-|-|....+.
T Consensus 220 ~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~ 277 (466)
T PRK07845 220 AAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTA 277 (466)
T ss_pred HHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCC
Confidence 334444433 24678899999999877778888888899999999999999877654
No 138
>PLN02487 zeta-carotene desaturase
Probab=77.45 E-value=1.1e+02 Score=32.97 Aligned_cols=35 Identities=20% Similarity=0.003 Sum_probs=30.5
Q ss_pred CCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHh
Q 010723 201 GRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKA 238 (502)
Q Consensus 201 grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~ 238 (502)
.+++|+||--.+-.| .+|+-|++.+...|+.+.+.
T Consensus 518 ~nl~LAGD~t~~~yP---at~EgAv~SG~~AA~~i~~~ 552 (569)
T PLN02487 518 SNFFLAGSYTKQDYI---DSMEGATLSGRQAAAYICEA 552 (569)
T ss_pred CCEEEeCcccccCCc---chHHHHHHHHHHHHHHHHHH
Confidence 699999999998888 38999999999999887664
No 139
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=77.03 E-value=7.5 Score=39.80 Aligned_cols=58 Identities=19% Similarity=0.255 Sum_probs=43.6
Q ss_pred eHHHHHHHHHhccC--CCeEecCCeEEEEEeeCCeEEE-EEccC--cEEEeeEEEEecCCC-ch
Q 010723 26 SRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSV-VLENG--QCYAGDLLIGADGIW-SK 83 (502)
Q Consensus 26 ~R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~v-~~~dg--~~~~adlvVgADG~~-S~ 83 (502)
.-..|.+.|.+.+. .++++.+++|++++.++++++. ...++ .+++||-+|-|.|+. |.
T Consensus 261 ~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~ 324 (419)
T TIGR03378 261 LGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSN 324 (419)
T ss_pred cHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCH
Confidence 34466777776653 2568888999999988887764 44555 489999999999999 75
No 140
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=76.94 E-value=7 Score=40.75 Aligned_cols=58 Identities=21% Similarity=0.302 Sum_probs=44.4
Q ss_pred HHHHHHHhccC--CCeEecCCeEEEEEeeCCeEEEEEccC--cEEEeeEEEEecCCCchhhc
Q 010723 29 TLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENG--QCYAGDLLIGADGIWSKVRK 86 (502)
Q Consensus 29 ~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~v~~~dg--~~~~adlvVgADG~~S~vR~ 86 (502)
.+.+.+.+.+. .+.++.+++|++++.+++++.+.+.+| +++.+|.||-|-|..+.+..
T Consensus 212 ~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~ 273 (461)
T TIGR01350 212 EVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEG 273 (461)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCC
Confidence 34444444442 367899999999988778888887777 57999999999999887653
No 141
>PRK07804 L-aspartate oxidase; Provisional
Probab=76.89 E-value=5.3 Score=42.67 Aligned_cols=59 Identities=19% Similarity=0.191 Sum_probs=41.9
Q ss_pred HHHHHHHHhccC--CCeEecCCeEEEEEeeCC-e---EEEE-----EccC-cEEEeeEEEEecCCCchhhc
Q 010723 28 MTLQQILAKAVG--DEIILNESNVIDFKDHGD-K---VSVV-----LENG-QCYAGDLLIGADGIWSKVRK 86 (502)
Q Consensus 28 ~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~-~---v~v~-----~~dg-~~~~adlvVgADG~~S~vR~ 86 (502)
..+.+.|.+++. .+.++.++.|+++..+++ . +.+. ..++ ..+.|+.||.|+|..|.++.
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~~~~ 214 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQLYA 214 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCCCCC
Confidence 356777777653 267889999999987653 3 3333 1233 36899999999999997754
No 142
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=76.64 E-value=6.7 Score=41.31 Aligned_cols=60 Identities=20% Similarity=0.150 Sum_probs=44.5
Q ss_pred HHHHHHHHhccC---CCeEecCCeEEEEEeeCCeEE-EEEcc-C--cEEEeeEEEEecCCCchhhcc
Q 010723 28 MTLQQILAKAVG---DEIILNESNVIDFKDHGDKVS-VVLEN-G--QCYAGDLLIGADGIWSKVRKN 87 (502)
Q Consensus 28 ~~L~~~L~~~~~---~~~v~~~~~v~~i~~~~~~v~-v~~~d-g--~~~~adlvVgADG~~S~vR~~ 87 (502)
..+.+.|.+.+. ++.+++++.++++..+++.+. +...+ + ..+.++.||.|+|..|.+...
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~~~~ 194 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGKLYQY 194 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccCCCCC
Confidence 467777877653 467999999999987666554 44433 3 368999999999999987553
No 143
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=75.98 E-value=7.2 Score=40.68 Aligned_cols=57 Identities=19% Similarity=0.299 Sum_probs=43.4
Q ss_pred HHHHHHHhcc--CCCeEecCCeEEEEEeeCCeEEEEEccC---cEEEeeEEEEecCCCchhh
Q 010723 29 TLQQILAKAV--GDEIILNESNVIDFKDHGDKVSVVLENG---QCYAGDLLIGADGIWSKVR 85 (502)
Q Consensus 29 ~L~~~L~~~~--~~~~v~~~~~v~~i~~~~~~v~v~~~dg---~~~~adlvVgADG~~S~vR 85 (502)
.+.+.+.+.+ ..+.++.+++|++++.+++++.+.+.+| +++.+|.||-|-|....+.
T Consensus 214 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~ 275 (462)
T PRK06416 214 EISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTE 275 (462)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCC
Confidence 3444444444 2367899999999998777888888776 6799999999999876654
No 144
>PLN02507 glutathione reductase
Probab=75.72 E-value=8.2 Score=40.79 Aligned_cols=46 Identities=13% Similarity=0.284 Sum_probs=39.7
Q ss_pred CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhh
Q 010723 40 DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 85 (502)
Q Consensus 40 ~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR 85 (502)
.+.++.+++|++++.+++++.+.+.+|+++.+|.||-|-|....+.
T Consensus 258 GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~ 303 (499)
T PLN02507 258 GINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTK 303 (499)
T ss_pred CCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCC
Confidence 4678999999999877777888888888999999999999887654
No 145
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=75.66 E-value=7.1 Score=39.81 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=41.4
Q ss_pred HHHHHHhccCC--CeEecCCeEEEEEeeCCe-EEEEEccCcEEEeeEEEEecCCCc
Q 010723 30 LQQILAKAVGD--EIILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLIGADGIWS 82 (502)
Q Consensus 30 L~~~L~~~~~~--~~v~~~~~v~~i~~~~~~-v~v~~~dg~~~~adlvVgADG~~S 82 (502)
..+-+.+.+.. .+++|+++|.+++..++. ..+.+++|.++.+|.||-|=|..+
T Consensus 175 vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg 230 (486)
T COG2509 175 VVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSG 230 (486)
T ss_pred HHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcch
Confidence 34444444432 679999999999988775 457788999999999999999865
No 146
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=75.30 E-value=8 Score=40.39 Aligned_cols=59 Identities=17% Similarity=0.152 Sum_probs=45.5
Q ss_pred eeHHHHHHHHHhccCC----CeEecCCeEEEEEeeCCeEEEEEccC--c--EEEeeEEEEecCCCch
Q 010723 25 ISRMTLQQILAKAVGD----EIILNESNVIDFKDHGDKVSVVLENG--Q--CYAGDLLIGADGIWSK 83 (502)
Q Consensus 25 i~R~~L~~~L~~~~~~----~~v~~~~~v~~i~~~~~~v~v~~~dg--~--~~~adlvVgADG~~S~ 83 (502)
..+..+.+.|.+.+.. ..++++++|++++..++.++|+..++ . +..+|.||.|-|..|.
T Consensus 108 p~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~~ 174 (461)
T PLN02172 108 PSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGHYTE 174 (461)
T ss_pred CCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEeccCCCC
Confidence 3567788888876632 23889999999998888888887653 2 4579999999998764
No 147
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=74.73 E-value=10 Score=39.49 Aligned_cols=45 Identities=27% Similarity=0.321 Sum_probs=38.5
Q ss_pred CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchh
Q 010723 40 DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 84 (502)
Q Consensus 40 ~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 84 (502)
...++.+++|++++.+++++.+++.+|+++.+|.||-|-|....+
T Consensus 223 gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 267 (452)
T TIGR03452 223 KWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNG 267 (452)
T ss_pred CCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCC
Confidence 367889999999987777788888888899999999999987654
No 148
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=72.88 E-value=9.8 Score=39.53 Aligned_cols=56 Identities=18% Similarity=0.313 Sum_probs=42.6
Q ss_pred HHHHHHhcc--CCCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhh
Q 010723 30 LQQILAKAV--GDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 85 (502)
Q Consensus 30 L~~~L~~~~--~~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR 85 (502)
+.+.|.+.+ ..+.++.+++|++++.+++++.+++.+|+++.+|.||-|=|....+.
T Consensus 209 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~ 266 (446)
T TIGR01424 209 MRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTK 266 (446)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCC
Confidence 334444443 24678999999999877777888888888999999999999865543
No 149
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=71.97 E-value=12 Score=40.36 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=42.2
Q ss_pred HHHHHHHHhcc---CCCeEecCCeEEEEEeeCCeEE----EEEccCc--EEEeeEEEEecCCCchh
Q 010723 28 MTLQQILAKAV---GDEIILNESNVIDFKDHGDKVS----VVLENGQ--CYAGDLLIGADGIWSKV 84 (502)
Q Consensus 28 ~~L~~~L~~~~---~~~~v~~~~~v~~i~~~~~~v~----v~~~dg~--~~~adlvVgADG~~S~v 84 (502)
..|.+.|.+++ +++.++.++.++++..+++.|. +...+|+ .+.|+.||.|+|..|.+
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence 35777777755 3467888999999987766554 2334663 68999999999999965
No 150
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=70.38 E-value=10 Score=39.29 Aligned_cols=52 Identities=15% Similarity=0.105 Sum_probs=40.0
Q ss_pred HHHHHHHhcc--CCCeEecCCeEEEEEeeCCe--EEEEEccCcEEEeeEEEEecCC
Q 010723 29 TLQQILAKAV--GDEIILNESNVIDFKDHGDK--VSVVLENGQCYAGDLLIGADGI 80 (502)
Q Consensus 29 ~L~~~L~~~~--~~~~v~~~~~v~~i~~~~~~--v~v~~~dg~~~~adlvVgADG~ 80 (502)
.|-+.|.+.+ ...+++++++|.+|+.++++ +.|++++|++++|+.||+....
T Consensus 233 ~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~ 288 (443)
T PTZ00363 233 GLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSY 288 (443)
T ss_pred HHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECccc
Confidence 5667776554 34679999999999877543 5688999999999999985444
No 151
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=70.20 E-value=12 Score=38.53 Aligned_cols=64 Identities=16% Similarity=0.118 Sum_probs=49.3
Q ss_pred CeEEEeeHHHHHHHHHhccC---CCeEecCCeEEEEEeeCCe-EEEEEcc---C--cEEEeeEEEEecCCCch
Q 010723 20 PVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDK-VSVVLEN---G--QCYAGDLLIGADGIWSK 83 (502)
Q Consensus 20 p~~~~i~R~~L~~~L~~~~~---~~~v~~~~~v~~i~~~~~~-v~v~~~d---g--~~~~adlvVgADG~~S~ 83 (502)
+.|--|+-..|-+.|.+.+. +..++++++|++|.+.+++ +.|+..| | .+++|++|+..=|.+|-
T Consensus 173 ~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL 245 (488)
T PF06039_consen 173 EEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGAL 245 (488)
T ss_pred CCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhH
Confidence 44666777788888888763 3679999999999998776 7777643 3 47999998877777764
No 152
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=70.04 E-value=11 Score=40.58 Aligned_cols=58 Identities=22% Similarity=0.342 Sum_probs=41.7
Q ss_pred HHHHHHHhccC--CCeEecCCeEEEEEeeCCeEE-EE---EccCc--EEEeeEEEEecCCCchhhc
Q 010723 29 TLQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VV---LENGQ--CYAGDLLIGADGIWSKVRK 86 (502)
Q Consensus 29 ~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~-v~---~~dg~--~~~adlvVgADG~~S~vR~ 86 (502)
.+...|.+.+. .+.+++++.++++..+++.|. +. ..+|+ .+.|+.||.|+|..|.+..
T Consensus 130 ~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~~~ 195 (566)
T TIGR01812 130 ALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIYK 195 (566)
T ss_pred HHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcccCCCC
Confidence 45556665442 467899999999987766543 22 23564 5899999999999997654
No 153
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=69.59 E-value=15 Score=36.80 Aligned_cols=57 Identities=12% Similarity=-0.008 Sum_probs=42.3
Q ss_pred EEEeeHHHHHHHHHhcc---CCCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCch
Q 010723 22 TRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 83 (502)
Q Consensus 22 ~~~i~R~~L~~~L~~~~---~~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 83 (502)
+..++-..+...|.+.+ ..++++.+++|++++.. .|++.+| +++||.||-|.|..|.
T Consensus 139 ~g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g-~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 139 ELRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRG-DVHADQVFVCPGADFE 198 (365)
T ss_pred CeeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCC-cEEeCEEEECCCCChh
Confidence 34566667777777654 24678889999999643 5666666 4789999999999874
No 154
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=69.17 E-value=12 Score=37.72 Aligned_cols=54 Identities=17% Similarity=0.149 Sum_probs=40.2
Q ss_pred HHHHHHHHHhccC--CCeEecCCeEEEEEeeCCeEEEEEccC-cEEEeeEEEEecCCCc
Q 010723 27 RMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENG-QCYAGDLLIGADGIWS 82 (502)
Q Consensus 27 R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~v~~~dg-~~~~adlvVgADG~~S 82 (502)
=..+.++|..++. .+.++++++|++| ++++..+.+.++ .+++||-||-|-|..|
T Consensus 85 A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 85 AAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCcc
Confidence 3466677777663 3789999999999 334466666543 4799999999999977
No 155
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=69.09 E-value=1.6 Score=45.21 Aligned_cols=63 Identities=17% Similarity=0.297 Sum_probs=0.0
Q ss_pred EEeeHHHHHHHHHhccC--CCeEecCCeEEEEEeeCCeEE-EEEcc--C-cEEEeeEEEEecCCCchhh
Q 010723 23 RVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVLEN--G-QCYAGDLLIGADGIWSKVR 85 (502)
Q Consensus 23 ~~i~R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~-v~~~d--g-~~~~adlvVgADG~~S~vR 85 (502)
+.+++..+..+|.+.+. ++++++++.|+++..+++.++ |++.+ | .+++|+++|.|+|.-...+
T Consensus 85 ~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l~~ 153 (428)
T PF12831_consen 85 VPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGDGDLAA 153 (428)
T ss_dssp ---------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 35666666666666653 367999999999998875443 44443 4 5899999999999644333
No 156
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=67.27 E-value=12 Score=41.76 Aligned_cols=49 Identities=29% Similarity=0.331 Sum_probs=38.8
Q ss_pred HHHHHHHhccCCCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCC
Q 010723 29 TLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIW 81 (502)
Q Consensus 29 ~L~~~L~~~~~~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~ 81 (502)
.|-+.|.+.++ |++++.|+.|...+++|.| +.+|+++.||.||-+==..
T Consensus 438 ~Li~aLa~~L~---I~ln~~V~~I~~~~dgV~V-~~~G~~~~AD~VIvTvPl~ 486 (808)
T PLN02328 438 TFVRELAKDLP---IFYERTVESIRYGVDGVIV-YAGGQEFHGDMVLCTVPLG 486 (808)
T ss_pred HHHHHHHhhCC---cccCCeeEEEEEcCCeEEE-EeCCeEEEcCEEEECCCHH
Confidence 56666666553 7899999999999888877 5678899999999886543
No 157
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=66.01 E-value=16 Score=37.87 Aligned_cols=57 Identities=19% Similarity=0.049 Sum_probs=40.6
Q ss_pred HHHHHHHHhccC--CCeEecCCeEEEEEeeCC----eEEEEEccCc--EEEeeEEEEecCCCchh
Q 010723 28 MTLQQILAKAVG--DEIILNESNVIDFKDHGD----KVSVVLENGQ--CYAGDLLIGADGIWSKV 84 (502)
Q Consensus 28 ~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~----~v~v~~~dg~--~~~adlvVgADG~~S~v 84 (502)
..|.+.|.+.+. .++++++++|+++..+++ ++.+...+++ .+.++.||-|.|..|.-
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n 194 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSN 194 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCC
Confidence 356677776653 367999999999987643 2334434454 47899999999998873
No 158
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=64.99 E-value=18 Score=37.77 Aligned_cols=57 Identities=28% Similarity=0.372 Sum_probs=41.8
Q ss_pred HHHHHHHhcc--CCCeEecCCeEEEEEeeCCeEEEEEc--cC--cEEEeeEEEEecCCCchhh
Q 010723 29 TLQQILAKAV--GDEIILNESNVIDFKDHGDKVSVVLE--NG--QCYAGDLLIGADGIWSKVR 85 (502)
Q Consensus 29 ~L~~~L~~~~--~~~~v~~~~~v~~i~~~~~~v~v~~~--dg--~~~~adlvVgADG~~S~vR 85 (502)
++.+.|.+.+ ..+.++.+++|++++.+++.+.+++. +| +++.+|.||-|-|....+.
T Consensus 214 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 214 EVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVE 276 (466)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCC
Confidence 3444555444 24679999999999877666666664 66 3799999999999877654
No 159
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=64.88 E-value=17 Score=38.03 Aligned_cols=57 Identities=25% Similarity=0.152 Sum_probs=42.3
Q ss_pred HHHHHHHhcc--CCCeEecCCeEEEEEeeCCeEEEEEccC----cEEEeeEEEEecCCCchhh
Q 010723 29 TLQQILAKAV--GDEIILNESNVIDFKDHGDKVSVVLENG----QCYAGDLLIGADGIWSKVR 85 (502)
Q Consensus 29 ~L~~~L~~~~--~~~~v~~~~~v~~i~~~~~~v~v~~~dg----~~~~adlvVgADG~~S~vR 85 (502)
.+.+.+.+.+ ..+.++.+++|++++.+++++.+.+.++ +++.+|.||-|-|....+.
T Consensus 225 ~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~ 287 (475)
T PRK06327 225 QVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTD 287 (475)
T ss_pred HHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCC
Confidence 3444444444 2467899999999988777777777653 4699999999999887654
No 160
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=64.80 E-value=16 Score=37.78 Aligned_cols=48 Identities=21% Similarity=0.296 Sum_probs=39.6
Q ss_pred HHHHHHHhccCCCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEe
Q 010723 29 TLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGA 77 (502)
Q Consensus 29 ~L~~~L~~~~~~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgA 77 (502)
.|.+.|.+.+... ++++++|+.|..+..+..+.+.+|..+.||-||-+
T Consensus 216 ~l~~al~~~l~~~-i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t 263 (444)
T COG1232 216 SLIEALAEKLEAK-IRTGTEVTKIDKKGAGKTIVDVGGEKITADGVIST 263 (444)
T ss_pred HHHHHHHHHhhhc-eeecceeeEEEEcCCccEEEEcCCceEEcceEEEc
Confidence 5677777776554 89999999999988888899999998888888854
No 161
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=64.33 E-value=12 Score=39.36 Aligned_cols=53 Identities=19% Similarity=0.195 Sum_probs=40.8
Q ss_pred HHHHHHHHhccCC--CeEecCCeEEEEEeeCC-eEEEEEccCcEEEeeEEEEecCC
Q 010723 28 MTLQQILAKAVGD--EIILNESNVIDFKDHGD-KVSVVLENGQCYAGDLLIGADGI 80 (502)
Q Consensus 28 ~~L~~~L~~~~~~--~~v~~~~~v~~i~~~~~-~v~v~~~dg~~~~adlvVgADG~ 80 (502)
..|-+.|.+.+.. ++|+++++|++|..+++ +++++..+|+.+++|.||.+=..
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence 4677777776643 78999999999998776 57788888878889988865433
No 162
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=64.15 E-value=17 Score=38.75 Aligned_cols=60 Identities=23% Similarity=0.226 Sum_probs=45.6
Q ss_pred EeeHHHHHHHHHhccCC----CeEecCCeEEEEEeeC-----CeEEEEEcc-Cc--EEEeeEEEEecCCCch
Q 010723 24 VISRMTLQQILAKAVGD----EIILNESNVIDFKDHG-----DKVSVVLEN-GQ--CYAGDLLIGADGIWSK 83 (502)
Q Consensus 24 ~i~R~~L~~~L~~~~~~----~~v~~~~~v~~i~~~~-----~~v~v~~~d-g~--~~~adlvVgADG~~S~ 83 (502)
..++..+.+.|.+-+.. ..++++++|++++..+ +.++|+..+ |+ +..+|.||.|-|.+|.
T Consensus 80 f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~ 151 (531)
T PF00743_consen 80 FPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSK 151 (531)
T ss_dssp SEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSC
T ss_pred CCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCC
Confidence 46889999999876532 3589999999998765 357888765 42 4568999999999884
No 163
>PLN02529 lysine-specific histone demethylase 1
Probab=63.17 E-value=18 Score=40.06 Aligned_cols=47 Identities=23% Similarity=0.295 Sum_probs=36.5
Q ss_pred HHHHHHHHhccCCCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEec
Q 010723 28 MTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGAD 78 (502)
Q Consensus 28 ~~L~~~L~~~~~~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgAD 78 (502)
..|-+.|.+.+ .|+++++|+.|+.++++|+|+. +++++.||.||-+=
T Consensus 357 ~~Li~aLA~~L---~IrLnt~V~~I~~~~dGVtV~t-~~~~~~AD~VIVTV 403 (738)
T PLN02529 357 WRLINALCEGV---PIFYGKTVDTIKYGNDGVEVIA-GSQVFQADMVLCTV 403 (738)
T ss_pred HHHHHHHHhcC---CEEcCCceeEEEEcCCeEEEEE-CCEEEEcCEEEECC
Confidence 34555565544 4899999999999999998875 45679999999775
No 164
>PLN03000 amine oxidase
Probab=62.67 E-value=19 Score=40.52 Aligned_cols=48 Identities=33% Similarity=0.405 Sum_probs=37.8
Q ss_pred HHHHHHHHhccCCCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecC
Q 010723 28 MTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADG 79 (502)
Q Consensus 28 ~~L~~~L~~~~~~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG 79 (502)
..|-+.|.+.++ |++++.|+.|+.++++|+|+..+ +++.||.||.|==
T Consensus 381 ~~LieaLa~~L~---I~Ln~~Vt~I~~~~dgV~V~~~~-~~~~AD~VIvTVP 428 (881)
T PLN03000 381 GRLVQALAENVP---ILYEKTVQTIRYGSNGVKVIAGN-QVYEGDMVLCTVP 428 (881)
T ss_pred HHHHHHHHhhCC---cccCCcEEEEEECCCeEEEEECC-cEEEeceEEEcCC
Confidence 356666666653 78999999999999999998654 5899999998753
No 165
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=62.23 E-value=21 Score=37.58 Aligned_cols=57 Identities=23% Similarity=0.276 Sum_probs=42.5
Q ss_pred HHHHHHHhcc--CCCeEecCCeEEEEEeeCCe-EEEEEccCcEEEeeEEEEecCCCchhh
Q 010723 29 TLQQILAKAV--GDEIILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLIGADGIWSKVR 85 (502)
Q Consensus 29 ~L~~~L~~~~--~~~~v~~~~~v~~i~~~~~~-v~v~~~dg~~~~adlvVgADG~~S~vR 85 (502)
++.+.+.+.+ ..+.+++++++++++.++++ +.+++.+|+++.+|.||-|-|....+.
T Consensus 232 ~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 232 TLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcc
Confidence 3444444444 23678999999999866444 667788888999999999999877654
No 166
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=61.98 E-value=19 Score=35.95 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=30.9
Q ss_pred CeEecCCeEEEEEeeCC-eEEEEEccC-----cEEEeeEEEEecCC
Q 010723 41 EIILNESNVIDFKDHGD-KVSVVLENG-----QCYAGDLLIGADGI 80 (502)
Q Consensus 41 ~~v~~~~~v~~i~~~~~-~v~v~~~dg-----~~~~adlvVgADG~ 80 (502)
..++.+++|++++.+++ ++++++.+. .++.+|.||-|-|-
T Consensus 294 ~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 294 LRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---E
T ss_pred eEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCCc
Confidence 56889999999999884 899998862 47899999999984
No 167
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=61.63 E-value=22 Score=38.31 Aligned_cols=59 Identities=17% Similarity=0.311 Sum_probs=43.6
Q ss_pred EeeHHHHHHHHHhccC---CCeEecCCeEEEEEee-CCe-EEEEEccCcEEEeeEEEEecCCCch
Q 010723 24 VISRMTLQQILAKAVG---DEIILNESNVIDFKDH-GDK-VSVVLENGQCYAGDLLIGADGIWSK 83 (502)
Q Consensus 24 ~i~R~~L~~~L~~~~~---~~~v~~~~~v~~i~~~-~~~-v~v~~~dg~~~~adlvVgADG~~S~ 83 (502)
.+++..+.+.|.+.+. +..++ ..+|+++..+ ++. +.|.+.+|..+.|+.||.|.|..+.
T Consensus 92 QVDr~~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL~ 155 (617)
T TIGR00136 92 QIDKVLYRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFLR 155 (617)
T ss_pred hCCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCcccC
Confidence 6788888888877653 34454 4578887654 333 4578888989999999999999864
No 168
>PTZ00052 thioredoxin reductase; Provisional
Probab=61.16 E-value=24 Score=37.32 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=38.0
Q ss_pred CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhh
Q 010723 40 DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 85 (502)
Q Consensus 40 ~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR 85 (502)
.+.++.++++..++..++.+.+.+.+|+++.+|.||-|=|....+.
T Consensus 236 GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~ 281 (499)
T PTZ00052 236 GTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIK 281 (499)
T ss_pred CCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCcc
Confidence 3678899999999876666778888898999999999999876544
No 169
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=61.09 E-value=6.6 Score=28.56 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=16.0
Q ss_pred cceeecCCCCceeecCCCCcEEeCCCCEEEeCCC
Q 010723 439 HGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 472 (502)
Q Consensus 439 nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~ 472 (502)
+..+|||. ++-.....|++||+|.|+..
T Consensus 33 g~V~VNGe------~e~rrg~Kl~~GD~V~~~~~ 60 (65)
T PF13275_consen 33 GEVKVNGE------VETRRGKKLRPGDVVEIDGE 60 (65)
T ss_dssp HHHEETTB----------SS----SSEEEEETTE
T ss_pred CceEECCE------EccccCCcCCCCCEEEECCE
Confidence 45788885 33344578999999999776
No 170
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=60.92 E-value=19 Score=40.45 Aligned_cols=44 Identities=18% Similarity=0.321 Sum_probs=37.0
Q ss_pred CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCch
Q 010723 40 DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 83 (502)
Q Consensus 40 ~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 83 (502)
.+.++.+++++++..++....|+++||+++.+|+||-|-|....
T Consensus 196 GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn 239 (785)
T TIGR02374 196 GLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPN 239 (785)
T ss_pred CCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence 36789999999998665556788999999999999999998744
No 171
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=60.22 E-value=6.5 Score=42.54 Aligned_cols=41 Identities=24% Similarity=0.261 Sum_probs=34.0
Q ss_pred CeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCC
Q 010723 41 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIW 81 (502)
Q Consensus 41 ~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~ 81 (502)
..++.++....+...+....+.|+||+.+.||+||-|+|++
T Consensus 202 i~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIr 242 (793)
T COG1251 202 IKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIR 242 (793)
T ss_pred ceeecccchhhhhcCcceeeEeecCCCcccceeEEEecccc
Confidence 45777877777766555667999999999999999999985
No 172
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=59.45 E-value=39 Score=35.14 Aligned_cols=59 Identities=24% Similarity=0.263 Sum_probs=46.0
Q ss_pred HHHHHHHhccC--CCeEecCCeEEEEEeeCCeEEEEEccCc--EEEeeEEEEecCCCchhhcc
Q 010723 29 TLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQ--CYAGDLLIGADGIWSKVRKN 87 (502)
Q Consensus 29 ~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~v~~~dg~--~~~adlvVgADG~~S~vR~~ 87 (502)
++.+.|.+.+. ...++.+++++.++..++++.+++++|+ ++++|.|+.|=|+.-.+-..
T Consensus 215 ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~L 277 (454)
T COG1249 215 EISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGL 277 (454)
T ss_pred HHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCC
Confidence 44445554443 3568999999999988877999999886 78999999999998776643
No 173
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=59.41 E-value=28 Score=36.25 Aligned_cols=56 Identities=13% Similarity=0.197 Sum_probs=39.6
Q ss_pred HHHHHHHhccC--CCeEecCCeEEEEEeeCCeEEEEEccC--cEEEeeEEEEecCCCchhh
Q 010723 29 TLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENG--QCYAGDLLIGADGIWSKVR 85 (502)
Q Consensus 29 ~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~v~~~dg--~~~~adlvVgADG~~S~vR 85 (502)
++.+.|.+.+. .+.+++++++++++.++..+.+.. +| .++.+|+||-|.|....+.
T Consensus 212 e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~-~g~~~~i~~D~vivA~G~~p~~~ 271 (458)
T PRK06912 212 DIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEY-EGSIQEVNAEFVLVSVGRKPRVQ 271 (458)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEE-CCceEEEEeCEEEEecCCccCCC
Confidence 34444444442 467899999999987666555543 34 3689999999999887764
No 174
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=58.61 E-value=26 Score=36.62 Aligned_cols=56 Identities=25% Similarity=0.223 Sum_probs=40.4
Q ss_pred HHHHHHhccC--CCeEecCCeEEEEEeeCCeEEEEEc---cC--cEEEeeEEEEecCCCchhh
Q 010723 30 LQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLE---NG--QCYAGDLLIGADGIWSKVR 85 (502)
Q Consensus 30 L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~v~~~---dg--~~~~adlvVgADG~~S~vR 85 (502)
+.+.|.+.+. .+.++.+++|++++.+++++.+++. +| +++.+|.||-|-|....+.
T Consensus 217 ~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 279 (466)
T PRK06115 217 TAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQ 279 (466)
T ss_pred HHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccc
Confidence 4444544442 4678999999999877667766553 23 5799999999999886654
No 175
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=58.53 E-value=23 Score=37.97 Aligned_cols=63 Identities=22% Similarity=0.376 Sum_probs=44.8
Q ss_pred EeeHHHHHHHHHhccC--CCeEecCCeEEEEEeeCCeEE-EEEc---cC--cEEEeeEEEEecCCCch-hhc
Q 010723 24 VISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVLE---NG--QCYAGDLLIGADGIWSK-VRK 86 (502)
Q Consensus 24 ~i~R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~-v~~~---dg--~~~~adlvVgADG~~S~-vR~ 86 (502)
.++-..|...|...+. .+.++.+++|+++..+++++. |++. +| .+++|+.||-|-|..|. +.+
T Consensus 145 ~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~ 216 (546)
T PRK11101 145 TVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAE 216 (546)
T ss_pred EECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHH
Confidence 4666677776666542 367889999999988776543 4442 23 37899999999999874 444
No 176
>PRK11507 ribosome-associated protein; Provisional
Probab=58.46 E-value=15 Score=27.12 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=21.1
Q ss_pred cceeecCCCCceeecCCCCcEEeCCCCEEEeCCC
Q 010723 439 HGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 472 (502)
Q Consensus 439 nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~ 472 (502)
+.+.|||. ++-.....|++||+|.|.+.
T Consensus 37 g~V~VNGe------ve~rRgkKl~~GD~V~~~g~ 64 (70)
T PRK11507 37 GQVKVDGA------VETRKRCKIVAGQTVSFAGH 64 (70)
T ss_pred CceEECCE------EecccCCCCCCCCEEEECCE
Confidence 55778885 33344568999999999987
No 177
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=58.01 E-value=23 Score=36.50 Aligned_cols=60 Identities=15% Similarity=0.002 Sum_probs=42.6
Q ss_pred HHHHHHHhccC--CCeEecCCeEEEEEee--CCeEE-EEEcc-CcEEEeeEEEEecCCCchhhccc
Q 010723 29 TLQQILAKAVG--DEIILNESNVIDFKDH--GDKVS-VVLEN-GQCYAGDLLIGADGIWSKVRKNL 88 (502)
Q Consensus 29 ~L~~~L~~~~~--~~~v~~~~~v~~i~~~--~~~v~-v~~~d-g~~~~adlvVgADG~~S~vR~~l 88 (502)
.+.+.|.+.+. .++++++++|+++..+ ++.+. +...+ +.++.|+.||-|.|..+.-+..+
T Consensus 124 ~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~ 189 (432)
T TIGR02485 124 ALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWL 189 (432)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHH
Confidence 46667766553 3679999999999876 34443 33333 35899999999999988766544
No 178
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=57.77 E-value=29 Score=36.10 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=40.7
Q ss_pred HHHHHHhcc--CCCeEecCCeEEEEEeeCCe-EEEEEccC-cEEEeeEEEEecCCCchhh
Q 010723 30 LQQILAKAV--GDEIILNESNVIDFKDHGDK-VSVVLENG-QCYAGDLLIGADGIWSKVR 85 (502)
Q Consensus 30 L~~~L~~~~--~~~~v~~~~~v~~i~~~~~~-v~v~~~dg-~~~~adlvVgADG~~S~vR 85 (502)
+.+.+.+.+ ..+.++.++++++++.++++ +.+++++| +++.+|.||-|=|....+-
T Consensus 209 ~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 209 ISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred HHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 334444433 23678999999999876544 67888888 5799999999999876554
No 179
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=57.71 E-value=45 Score=34.60 Aligned_cols=56 Identities=18% Similarity=0.135 Sum_probs=36.3
Q ss_pred HHHHHHHHHhccCCCeEecCCeEEEEE--eeCCeEEEEEccCcE--EEeeEEEEecCCCc
Q 010723 27 RMTLQQILAKAVGDEIILNESNVIDFK--DHGDKVSVVLENGQC--YAGDLLIGADGIWS 82 (502)
Q Consensus 27 R~~L~~~L~~~~~~~~v~~~~~v~~i~--~~~~~v~v~~~dg~~--~~adlvVgADG~~S 82 (502)
+..+...+.+-.....+.+++.|..+. .+++..+|++++|.+ +.||.||-|-|..|
T Consensus 85 ~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~ 144 (443)
T COG2072 85 KDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLS 144 (443)
T ss_pred HHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCC
Confidence 444444444433333456666665554 444578999998865 55999999999944
No 180
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=57.61 E-value=31 Score=35.71 Aligned_cols=56 Identities=21% Similarity=0.197 Sum_probs=41.0
Q ss_pred HHHHHHHhccC--CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhh
Q 010723 29 TLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 85 (502)
Q Consensus 29 ~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR 85 (502)
.+.+.|.+.+. .+.+++++++++++.+++.+++..+++ ++.+|.||-|=|....+-
T Consensus 200 ~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~~ 257 (441)
T PRK08010 200 DIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPATA 257 (441)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCCC
Confidence 34444444442 367899999999988777777776555 589999999999877653
No 181
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=57.46 E-value=20 Score=26.70 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=22.2
Q ss_pred cceeecCCCCceeecCCCCcEEeCCCCEEEeCCC
Q 010723 439 HGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 472 (502)
Q Consensus 439 nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~ 472 (502)
+.++|||. ++-.....|.+||+|.|.+.
T Consensus 37 g~V~vNGe------~EtRRgkKlr~gd~V~i~~~ 64 (73)
T COG2501 37 GEVKVNGE------VETRRGKKLRDGDVVEIPGQ 64 (73)
T ss_pred CeEEECCe------eeeccCCEeecCCEEEECCE
Confidence 57899995 33344578999999999987
No 182
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=56.45 E-value=34 Score=36.88 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=40.6
Q ss_pred HHHHHHHhccC--CCeEecCCeEEEEEeeCCeEE----EEEccCc--EEEeeEEEEecCCCchh
Q 010723 29 TLQQILAKAVG--DEIILNESNVIDFKDHGDKVS----VVLENGQ--CYAGDLLIGADGIWSKV 84 (502)
Q Consensus 29 ~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~----v~~~dg~--~~~adlvVgADG~~S~v 84 (502)
.+.+.|.+.+. ++.++.++.++++..+++.|. +...+|+ .+.|+.||.|.|..+.+
T Consensus 136 ~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 136 AILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred HHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC
Confidence 56666666553 367899999999987665433 2334564 58999999999999875
No 183
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=56.09 E-value=41 Score=35.20 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=41.0
Q ss_pred HHHHHHhccC-CCeEecCCeEEEEEeeCCeEEEEEccC----cEEEeeEEEEecCCCchhh
Q 010723 30 LQQILAKAVG-DEIILNESNVIDFKDHGDKVSVVLENG----QCYAGDLLIGADGIWSKVR 85 (502)
Q Consensus 30 L~~~L~~~~~-~~~v~~~~~v~~i~~~~~~v~v~~~dg----~~~~adlvVgADG~~S~vR 85 (502)
+.+.+.+.+. ...++.+++|++++.+++++.+++.++ +++.+|.||-|-|....+.
T Consensus 217 ~~~~~~~~l~~~v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~ 277 (471)
T PRK06467 217 IVKVFTKRIKKQFNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGK 277 (471)
T ss_pred HHHHHHHHHhhceEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCC
Confidence 3344444332 256889999999987777777777653 3699999999999987765
No 184
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=55.31 E-value=36 Score=36.12 Aligned_cols=60 Identities=22% Similarity=0.388 Sum_probs=44.5
Q ss_pred EeeHHHHHHHHHhccC--CCeEecCCeEEEEEeeCCeEE-EEEc---cC--cEEEeeEEEEecCCCch
Q 010723 24 VISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVLE---NG--QCYAGDLLIGADGIWSK 83 (502)
Q Consensus 24 ~i~R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~-v~~~---dg--~~~~adlvVgADG~~S~ 83 (502)
.++=..|...|.+.+. .+.++.+++|++++.+++++. |++. +| .+++|+.||-|=|..|.
T Consensus 124 ~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~ 191 (516)
T TIGR03377 124 TVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAG 191 (516)
T ss_pred EECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchH
Confidence 5666777777766653 367889999999998777643 4443 34 36899999999999875
No 185
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=55.25 E-value=33 Score=35.72 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=39.8
Q ss_pred HHHHHHhcc--CCCeEecCCeEEEEEeeCCeEEEEEcc---CcEEEeeEEEEecCCCchhh
Q 010723 30 LQQILAKAV--GDEIILNESNVIDFKDHGDKVSVVLEN---GQCYAGDLLIGADGIWSKVR 85 (502)
Q Consensus 30 L~~~L~~~~--~~~~v~~~~~v~~i~~~~~~v~v~~~d---g~~~~adlvVgADG~~S~vR 85 (502)
+...+.+.+ ..+.++++++|++++.+++.+.+++.+ ++++.+|.||-|-|....+-
T Consensus 209 ~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~ 269 (463)
T TIGR02053 209 ISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTD 269 (463)
T ss_pred HHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCC
Confidence 334444433 246789999999998776666666542 35799999999999877654
No 186
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=54.90 E-value=29 Score=35.65 Aligned_cols=53 Identities=23% Similarity=0.332 Sum_probs=38.1
Q ss_pred HHHHHHhccC--CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchh
Q 010723 30 LQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 84 (502)
Q Consensus 30 L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 84 (502)
+.+.+.+.+. .+.+++++++++++.++. + +.+.+|+++.+|+||-|-|.+...
T Consensus 181 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-~-v~~~~g~~i~~D~vi~a~G~~p~~ 235 (427)
T TIGR03385 181 MNQIVEEELKKHEINLRLNEEVDSIEGEER-V-KVFTSGGVYQADMVILATGIKPNS 235 (427)
T ss_pred HHHHHHHHHHHcCCEEEeCCEEEEEecCCC-E-EEEcCCCEEEeCEEEECCCccCCH
Confidence 3444444432 367889999999976443 3 567788999999999999987543
No 187
>PRK06370 mercuric reductase; Validated
Probab=53.94 E-value=40 Score=35.16 Aligned_cols=56 Identities=14% Similarity=0.187 Sum_probs=39.6
Q ss_pred HHHHHHhcc--CCCeEecCCeEEEEEeeCCeEEEEEc--c-CcEEEeeEEEEecCCCchhh
Q 010723 30 LQQILAKAV--GDEIILNESNVIDFKDHGDKVSVVLE--N-GQCYAGDLLIGADGIWSKVR 85 (502)
Q Consensus 30 L~~~L~~~~--~~~~v~~~~~v~~i~~~~~~v~v~~~--d-g~~~~adlvVgADG~~S~vR 85 (502)
+.+.|.+.+ ..+.++++++|++++.+++++.+.+. + +.++.+|.||-|-|......
T Consensus 214 ~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 214 VAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTD 274 (463)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCC
Confidence 344444444 24678999999999877666555543 3 35799999999999876654
No 188
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=53.74 E-value=29 Score=36.25 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=42.2
Q ss_pred HHHHHHHHhccC--CCeEecCCeEEEEEeeCCeEE-EEE--ccC--cEEEeeEEEEecCCCchhhccc
Q 010723 28 MTLQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVL--ENG--QCYAGDLLIGADGIWSKVRKNL 88 (502)
Q Consensus 28 ~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~-v~~--~dg--~~~~adlvVgADG~~S~vR~~l 88 (502)
..+...|.+.+. .+.++++++|+++..+++.|. +.. .++ ..++|+.||.|.|..+.-+..+
T Consensus 131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~ 198 (466)
T PRK08274 131 KALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFESNREWL 198 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCCCCHHHH
Confidence 356666666553 367899999999987666544 333 233 3689999999999877655444
No 189
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=53.53 E-value=30 Score=35.60 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=35.7
Q ss_pred HHHHHHhcc--CCCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCc
Q 010723 30 LQQILAKAV--GDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWS 82 (502)
Q Consensus 30 L~~~L~~~~--~~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S 82 (502)
+.+.+.+.+ ..++++.+++|+++.. + .+++++|+++.+|+||-|-|...
T Consensus 230 ~~~~~~~~L~~~gV~v~~~~~v~~v~~--~--~v~~~~g~~i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 230 LRKYGQRRLRRLGVDIRTKTAVKEVLD--K--EVVLKDGEVIPTGLVVWSTGVGP 280 (424)
T ss_pred HHHHHHHHHHHCCCEEEeCCeEEEEeC--C--EEEECCCCEEEccEEEEccCCCC
Confidence 344444433 2367899999998864 3 35678999999999999999654
No 190
>PRK14694 putative mercuric reductase; Provisional
Probab=52.41 E-value=39 Score=35.33 Aligned_cols=56 Identities=13% Similarity=0.200 Sum_probs=40.8
Q ss_pred HHHHHHHhcc--CCCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhh
Q 010723 29 TLQQILAKAV--GDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 85 (502)
Q Consensus 29 ~L~~~L~~~~--~~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR 85 (502)
.+.+.+.+.+ ..+.++.++++.+++.+++.+.+.+.++ ++.+|.||-|-|....+.
T Consensus 219 ~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~ 276 (468)
T PRK14694 219 AVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATGRTPNTE 276 (468)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCCCCcC
Confidence 3444555444 2367889999999987766666666544 799999999999987654
No 191
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=52.35 E-value=35 Score=38.62 Aligned_cols=45 Identities=13% Similarity=0.278 Sum_probs=36.8
Q ss_pred CCeEecCCeEEEEEeeC--CeEEEEEccCcEEEeeEEEEecCCCchh
Q 010723 40 DEIILNESNVIDFKDHG--DKVSVVLENGQCYAGDLLIGADGIWSKV 84 (502)
Q Consensus 40 ~~~v~~~~~v~~i~~~~--~~v~v~~~dg~~~~adlvVgADG~~S~v 84 (502)
.+.++.++++++|..++ ....++++||+++.+|+||-|-|.+...
T Consensus 201 GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~ 247 (847)
T PRK14989 201 GVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQD 247 (847)
T ss_pred CCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCc
Confidence 36799999999997643 3456888999999999999999987654
No 192
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=52.16 E-value=40 Score=36.35 Aligned_cols=57 Identities=16% Similarity=0.127 Sum_probs=40.5
Q ss_pred HHHHHHhcc---CCCeEecCCeEEEEEeeCCeEE-E---EEccCc--EEEeeEEEEecCCCchhhc
Q 010723 30 LQQILAKAV---GDEIILNESNVIDFKDHGDKVS-V---VLENGQ--CYAGDLLIGADGIWSKVRK 86 (502)
Q Consensus 30 L~~~L~~~~---~~~~v~~~~~v~~i~~~~~~v~-v---~~~dg~--~~~adlvVgADG~~S~vR~ 86 (502)
+.+.|.+++ ..+.++.++.++++..+++.+. + ...+|+ .+.|+.||.|+|..+.+..
T Consensus 139 i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~~~ 204 (577)
T PRK06069 139 IMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRLYG 204 (577)
T ss_pred HHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhcccCC
Confidence 556666654 2467889999999987665443 2 234564 5899999999999987654
No 193
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=52.13 E-value=41 Score=34.72 Aligned_cols=55 Identities=22% Similarity=0.302 Sum_probs=40.0
Q ss_pred HHHHHHHhcc--CCCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchh
Q 010723 29 TLQQILAKAV--GDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 84 (502)
Q Consensus 29 ~L~~~L~~~~--~~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 84 (502)
.+.+.+.+.+ ..+.++.+++|++++.+++.+.++. +|+++.+|.||-|-|....+
T Consensus 199 ~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~viva~G~~p~~ 255 (438)
T PRK07251 199 SVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVT-EDETYRFDALLYATGRKPNT 255 (438)
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEE-CCeEEEcCEEEEeeCCCCCc
Confidence 4444444433 2367899999999987666666653 56789999999999987664
No 194
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=50.50 E-value=43 Score=35.43 Aligned_cols=60 Identities=15% Similarity=0.209 Sum_probs=41.3
Q ss_pred HHHHHHHhccC--CCeEecCCeEEEEEeeCCeE---EEEEccCc--EEEeeEEEEecCCCchhhccc
Q 010723 29 TLQQILAKAVG--DEIILNESNVIDFKDHGDKV---SVVLENGQ--CYAGDLLIGADGIWSKVRKNL 88 (502)
Q Consensus 29 ~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v---~v~~~dg~--~~~adlvVgADG~~S~vR~~l 88 (502)
.+.+.|.+.+. .+.++++++|+++..+++.| .+...+++ ++.++.||.|.|..+.-...+
T Consensus 191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~ 257 (506)
T PRK06481 191 YLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMI 257 (506)
T ss_pred HHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHH
Confidence 35556665542 36789999999998766543 34434443 689999999999887654433
No 195
>PRK14727 putative mercuric reductase; Provisional
Probab=50.17 E-value=49 Score=34.70 Aligned_cols=55 Identities=13% Similarity=0.171 Sum_probs=41.1
Q ss_pred HHHHHHhccC--CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhh
Q 010723 30 LQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 85 (502)
Q Consensus 30 L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR 85 (502)
+.+.|.+.+. .+.++++++|++++.+++.+.+.+.++ ++.+|.||-|=|....+.
T Consensus 230 ~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 230 LGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANTH 286 (479)
T ss_pred HHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCcc
Confidence 3444444442 367899999999987777777776655 689999999999987664
No 196
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=50.12 E-value=27 Score=35.95 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=29.4
Q ss_pred EecCCeEEEEEeeC-CeEEEEEccCcEEEeeEEEEe
Q 010723 43 ILNESNVIDFKDHG-DKVSVVLENGQCYAGDLLIGA 77 (502)
Q Consensus 43 v~~~~~v~~i~~~~-~~v~v~~~dg~~~~adlvVgA 77 (502)
++++++|..|+..+ +.|+|++.||+.+.||.||..
T Consensus 246 ~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvT 281 (498)
T KOG0685|consen 246 IHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIVT 281 (498)
T ss_pred hcccccceeeccCCCCcEEEEEeCCcEEeccEEEEE
Confidence 44559999998775 679999999999999999864
No 197
>PRK08401 L-aspartate oxidase; Provisional
Probab=49.85 E-value=44 Score=34.91 Aligned_cols=58 Identities=19% Similarity=0.108 Sum_probs=40.7
Q ss_pred HHHHHHHHhccC--CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhhc
Q 010723 28 MTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRK 86 (502)
Q Consensus 28 ~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~ 86 (502)
..+.+.|.+.+. .+.++.+ .++++..+++.+.....++..+.++-||.|.|..|....
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~~g~~i~a~~VVLATGG~~~~~~ 179 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFLDGELLKFDATVIATGGFSGLFK 179 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEECCEEEEeCeEEECCCcCcCCCC
Confidence 356777776653 3556654 788887666555422336778999999999999998764
No 198
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=49.33 E-value=51 Score=33.97 Aligned_cols=53 Identities=23% Similarity=0.276 Sum_probs=39.4
Q ss_pred HHHHHHHhccC--CCeEecCCeEEEEEeeCCeEEEEE-ccCc--EEEeeEEEEecCCC
Q 010723 29 TLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVL-ENGQ--CYAGDLLIGADGIW 81 (502)
Q Consensus 29 ~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~v~~-~dg~--~~~adlvVgADG~~ 81 (502)
.+.+.|.+.+. ...++.+++|++++.+++++.+.. .+|+ .++||.||-|-|..
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 56677776653 367899999999998777776543 3453 58999999999974
No 199
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=48.46 E-value=39 Score=35.01 Aligned_cols=59 Identities=19% Similarity=0.144 Sum_probs=39.8
Q ss_pred HHHHHHHhccC--CCeEecCCeEEEEEeeCCe-E-EEEEccCc-----EEEeeEEEEecCCCchhhccc
Q 010723 29 TLQQILAKAVG--DEIILNESNVIDFKDHGDK-V-SVVLENGQ-----CYAGDLLIGADGIWSKVRKNL 88 (502)
Q Consensus 29 ~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~-v-~v~~~dg~-----~~~adlvVgADG~~S~vR~~l 88 (502)
.|-+.|.+.+. ...|++++.|++|+.++++ + .+++.+|+ ++.||-||-|=..+. +++.+
T Consensus 214 ~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~-~~~lL 281 (453)
T TIGR02731 214 RLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDI-FKLLL 281 (453)
T ss_pred HHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHH-HHhhC
Confidence 34555555442 3579999999999865443 3 36666665 789999998877654 55544
No 200
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=47.71 E-value=47 Score=34.29 Aligned_cols=54 Identities=15% Similarity=0.201 Sum_probs=36.5
Q ss_pred HHHHHHHhccC--CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCch
Q 010723 29 TLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 83 (502)
Q Consensus 29 ~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 83 (502)
.+.+.|.+.+. .+.+++++++++++.++....+.. ++.++.+|+||.|-|....
T Consensus 192 ~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~-~~~~i~~d~vi~a~G~~p~ 247 (444)
T PRK09564 192 EITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVT-DKGEYEADVVIVATGVKPN 247 (444)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEe-CCCEEEcCEEEECcCCCcC
Confidence 34445544442 367899999999975443333444 4557999999999998654
No 201
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=46.43 E-value=57 Score=34.33 Aligned_cols=46 Identities=17% Similarity=0.008 Sum_probs=36.4
Q ss_pred CCeEecCCeEEEEEeeCCeEEEEEccC---cEEEeeEEEEecCCCchhh
Q 010723 40 DEIILNESNVIDFKDHGDKVSVVLENG---QCYAGDLLIGADGIWSKVR 85 (502)
Q Consensus 40 ~~~v~~~~~v~~i~~~~~~v~v~~~dg---~~~~adlvVgADG~~S~vR 85 (502)
.+.+++++.++.++..++.+.+++.++ +++.+|.||-|=|....+.
T Consensus 234 gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~ 282 (484)
T TIGR01438 234 GVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTR 282 (484)
T ss_pred CCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCC
Confidence 467899999999987666777877766 3799999999999865543
No 202
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=46.25 E-value=48 Score=34.29 Aligned_cols=51 Identities=12% Similarity=0.192 Sum_probs=37.0
Q ss_pred HHHHHHhccC--CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchh
Q 010723 30 LQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 84 (502)
Q Consensus 30 L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 84 (502)
+.+.+.+.+. .+.++++++|++++. . .+++++|+++.+|+||-|-|....+
T Consensus 191 ~~~~l~~~l~~~gI~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G~~pn~ 243 (438)
T PRK13512 191 MNQPILDELDKREIPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVGTHPNS 243 (438)
T ss_pred HHHHHHHHHHhcCCEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcCCCcCh
Confidence 3344444442 367889999999863 2 4667788899999999999987543
No 203
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=46.10 E-value=15 Score=37.01 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=36.6
Q ss_pred CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCC
Q 010723 40 DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGI 80 (502)
Q Consensus 40 ~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~ 80 (502)
.+.++-+..|.++......+.+.++||.+++.|+||.|-|-
T Consensus 407 GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ 447 (659)
T KOG1346|consen 407 GVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGE 447 (659)
T ss_pred CceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecC
Confidence 35688889999888888889999999999999999999996
No 204
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=46.08 E-value=50 Score=34.07 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=37.1
Q ss_pred CeEecCCeEEEEEeeCC--eEEEEEccCcEEEeeEEEEecCCCchh
Q 010723 41 EIILNESNVIDFKDHGD--KVSVVLENGQCYAGDLLIGADGIWSKV 84 (502)
Q Consensus 41 ~~v~~~~~v~~i~~~~~--~v~v~~~dg~~~~adlvVgADG~~S~v 84 (502)
++++.++.+.+++.+.+ ...|.+.||+++.||+||-.=|+.+.+
T Consensus 270 Vk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t 315 (478)
T KOG1336|consen 270 VKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNT 315 (478)
T ss_pred eEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccc
Confidence 67899999999987763 356889999999999999999987654
No 205
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=45.89 E-value=78 Score=32.90 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=38.7
Q ss_pred HHHHHHhccCC-CeEecCCeEEEEEeeCC-eEEEEEccC--cEEEeeEEEEecCCCchhh
Q 010723 30 LQQILAKAVGD-EIILNESNVIDFKDHGD-KVSVVLENG--QCYAGDLLIGADGIWSKVR 85 (502)
Q Consensus 30 L~~~L~~~~~~-~~v~~~~~v~~i~~~~~-~v~v~~~dg--~~~~adlvVgADG~~S~vR 85 (502)
+.+.+.+.+.. +.+++++++++++.+++ .+++++.++ +++.+|.||.|-|....+.
T Consensus 212 ~~~~~~~~l~~~I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~ 271 (460)
T PRK06292 212 VSKQAQKILSKEFKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTD 271 (460)
T ss_pred HHHHHHHHHhhccEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCC
Confidence 34444443322 67889999999986654 566555444 4799999999999876654
No 206
>PRK06175 L-aspartate oxidase; Provisional
Probab=45.71 E-value=61 Score=33.54 Aligned_cols=56 Identities=18% Similarity=0.292 Sum_probs=39.3
Q ss_pred HHHHHHHhccC---CCeEecCCeEEEEEeeCCeEE-EE-EccCc--EEEeeEEEEecCCCchh
Q 010723 29 TLQQILAKAVG---DEIILNESNVIDFKDHGDKVS-VV-LENGQ--CYAGDLLIGADGIWSKV 84 (502)
Q Consensus 29 ~L~~~L~~~~~---~~~v~~~~~v~~i~~~~~~v~-v~-~~dg~--~~~adlvVgADG~~S~v 84 (502)
.+.+.|.+.+. ++.++++++++++..+++.+. +. ..++. .+.|+-||-|.|..+.+
T Consensus 129 ~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~~l 191 (433)
T PRK06175 129 KVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGIGGL 191 (433)
T ss_pred HHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCccccc
Confidence 46666666542 468999999999987666433 22 23444 58999999999997653
No 207
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=44.77 E-value=41 Score=33.63 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=31.4
Q ss_pred CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCc
Q 010723 40 DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWS 82 (502)
Q Consensus 40 ~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S 82 (502)
.+.++.++++++++. + .+.+.+|+++.+|+||-|-|...
T Consensus 205 gV~v~~~~~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 205 GIEVHEGAPVTRGPD--G--ALILADGRTLPADAILWATGARA 243 (364)
T ss_pred CCEEEeCCeeEEEcC--C--eEEeCCCCEEecCEEEEccCCCh
Confidence 467889999998853 2 46678899999999999999754
No 208
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=44.11 E-value=43 Score=26.64 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=23.4
Q ss_pred eeecCCCCceeecCCCCcEEeCCCCEEEeCCCceEEEEEEEe
Q 010723 441 TYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVI 482 (502)
Q Consensus 441 t~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~~~~ 482 (502)
+.|||. +..|. ..++.||+|+|.-. .-.+.+++.
T Consensus 36 V~vNG~-----~aKpS--~~VK~GD~l~i~~~-~~~~~v~Vl 69 (100)
T COG1188 36 VKVNGQ-----RAKPS--KEVKVGDILTIRFG-NKEFTVKVL 69 (100)
T ss_pred EEECCE-----Ecccc--cccCCCCEEEEEeC-CcEEEEEEE
Confidence 568888 77665 46899999987765 225555554
No 209
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=43.43 E-value=40 Score=23.52 Aligned_cols=32 Identities=19% Similarity=0.411 Sum_probs=24.5
Q ss_pred CCCeEecCCeEEEEEeeCCeEEEEEccCcEEE
Q 010723 39 GDEIILNESNVIDFKDHGDKVSVVLENGQCYA 70 (502)
Q Consensus 39 ~~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~ 70 (502)
+...+.+..+|++++...+..+|.+.||+++.
T Consensus 17 P~s~lYYe~kV~~~d~~~~~y~V~Y~DGtel~ 48 (55)
T PF09465_consen 17 PGSSLYYEGKVLSYDSKSDRYTVLYEDGTELE 48 (55)
T ss_dssp TTTS-EEEEEEEEEETTTTEEEEEETTS-EEE
T ss_pred CCCCcEEEEEEEEecccCceEEEEEcCCCEEE
Confidence 34456778899999998999999999998653
No 210
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=42.97 E-value=44 Score=33.35 Aligned_cols=63 Identities=17% Similarity=0.214 Sum_probs=39.9
Q ss_pred EeeHHHHHHHHHhccCC--CeEecCCeEEEEEeeCC----eEEEEEc----cCcEEEeeEEEEecCCCchhhc
Q 010723 24 VISRMTLQQILAKAVGD--EIILNESNVIDFKDHGD----KVSVVLE----NGQCYAGDLLIGADGIWSKVRK 86 (502)
Q Consensus 24 ~i~R~~L~~~L~~~~~~--~~v~~~~~v~~i~~~~~----~v~v~~~----dg~~~~adlvVgADG~~S~vR~ 86 (502)
...|..+.+.|.-.+.. ..++++++|++|+...+ ..+|+.. +++++.|+-||-|-|..-.+-.
T Consensus 91 ~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~iP~ 163 (341)
T PF13434_consen 91 FPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRIPE 163 (341)
T ss_dssp S-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE---G
T ss_pred CCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCCCc
Confidence 36788888888776654 33889999999987654 3677774 2468999999999994433333
No 211
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=42.94 E-value=94 Score=31.38 Aligned_cols=55 Identities=24% Similarity=0.296 Sum_probs=40.4
Q ss_pred HHHHHHHhccCCCeEecCCeEEEEEeeCC-eEEEEEcc---C--cEEEeeEEEEecCCCchhh
Q 010723 29 TLQQILAKAVGDEIILNESNVIDFKDHGD-KVSVVLEN---G--QCYAGDLLIGADGIWSKVR 85 (502)
Q Consensus 29 ~L~~~L~~~~~~~~v~~~~~v~~i~~~~~-~v~v~~~d---g--~~~~adlvVgADG~~S~vR 85 (502)
.+++.|.. ....++.+++|+..+.+++ .|.|++.+ + ++++||.+..|=|++--+-
T Consensus 257 ~~qr~L~k--QgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~ 317 (506)
T KOG1335|consen 257 AFQRVLQK--QGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTE 317 (506)
T ss_pred HHHHHHHh--cCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCccccc
Confidence 34444443 3356899999999999887 67777765 3 4789999999999875443
No 212
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=38.68 E-value=98 Score=33.66 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcc---CCCeEecCCeEEEEEeeCCeEE-E---EEccCc--EEEeeEEEEecCCCch
Q 010723 27 RMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVS-V---VLENGQ--CYAGDLLIGADGIWSK 83 (502)
Q Consensus 27 R~~L~~~L~~~~---~~~~v~~~~~v~~i~~~~~~v~-v---~~~dg~--~~~adlvVgADG~~S~ 83 (502)
-..+.+.|.+.+ .++.++.++.|+++..+++.+. + ...+|+ .+.|+.||.|.|..+.
T Consensus 131 G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 131 GESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred hHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCchhh
Confidence 345667776655 2367999999999986665443 2 233554 6899999999998774
No 213
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=38.58 E-value=93 Score=33.58 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=36.8
Q ss_pred HHHHHHhccC--CCeEecCCeEEEEEeeCCeEE-EEE--ccCc-EEEe-eEEEEecCCCch
Q 010723 30 LQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVL--ENGQ-CYAG-DLLIGADGIWSK 83 (502)
Q Consensus 30 L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~-v~~--~dg~-~~~a-dlvVgADG~~S~ 83 (502)
|.+.|.+.+. .++++++++|+++..+++.|. |.. .++. ++++ +.||-|-|..+.
T Consensus 219 l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 219 LVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 4556666553 367999999999887665543 333 3343 5789 888888888775
No 214
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=38.41 E-value=70 Score=32.51 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=34.1
Q ss_pred CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCch
Q 010723 40 DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 83 (502)
Q Consensus 40 ~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 83 (502)
++.++.+++|+.++.+.. ++++++|+++.+|.||-|-|++..
T Consensus 72 ~i~~~~g~~V~~id~~~~--~v~~~~g~~~~yd~LViATGs~~~ 113 (396)
T PRK09754 72 NVHLHSGVTIKTLGRDTR--ELVLTNGESWHWDQLFIATGAAAR 113 (396)
T ss_pred CCEEEcCCEEEEEECCCC--EEEECCCCEEEcCEEEEccCCCCC
Confidence 356888999999877654 456678899999999999999863
No 215
>PRK13748 putative mercuric reductase; Provisional
Probab=37.92 E-value=89 Score=33.46 Aligned_cols=55 Identities=15% Similarity=0.177 Sum_probs=40.3
Q ss_pred HHHHHHhcc--CCCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhh
Q 010723 30 LQQILAKAV--GDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 85 (502)
Q Consensus 30 L~~~L~~~~--~~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR 85 (502)
+.+.|.+.+ ..+.++.++++++++.+++.+.+.+.++ ++.+|.||-|=|....+.
T Consensus 312 ~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~ 368 (561)
T PRK13748 312 IGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNTR 368 (561)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCCC
Confidence 334444443 2367899999999987777777776655 699999999999876654
No 216
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=37.70 E-value=1e+02 Score=32.25 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=37.9
Q ss_pred HHHHHHhcc--CCCeEecCCeEEEEEe-eCCeEE-EEEccCc--EEEeeEEEEecCCCchhh
Q 010723 30 LQQILAKAV--GDEIILNESNVIDFKD-HGDKVS-VVLENGQ--CYAGDLLIGADGIWSKVR 85 (502)
Q Consensus 30 L~~~L~~~~--~~~~v~~~~~v~~i~~-~~~~v~-v~~~dg~--~~~adlvVgADG~~S~vR 85 (502)
+.+.|.+.+ ..+.++.+++|++++. .++++. +.+.+|+ ++.+|.||.|=|....+.
T Consensus 223 ~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 284 (472)
T PRK05976 223 LSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTE 284 (472)
T ss_pred HHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCC
Confidence 334444433 2467899999999975 234443 4455663 699999999999986654
No 217
>PRK07121 hypothetical protein; Validated
Probab=36.93 E-value=1e+02 Score=32.34 Aligned_cols=56 Identities=20% Similarity=0.173 Sum_probs=39.4
Q ss_pred HHHHHHHHhccC--CCeEecCCeEEEEEeeCC-eEE-EEEc-cCc--EEEe-eEEEEecCCCch
Q 010723 28 MTLQQILAKAVG--DEIILNESNVIDFKDHGD-KVS-VVLE-NGQ--CYAG-DLLIGADGIWSK 83 (502)
Q Consensus 28 ~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~-~v~-v~~~-dg~--~~~a-dlvVgADG~~S~ 83 (502)
..+.+.|.+.+. .++++++++++++..+++ .+. |... +++ .++| +.||.|.|..+.
T Consensus 177 ~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 177 AMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCc
Confidence 356777777653 367999999999987643 332 3333 333 5789 999999999886
No 218
>COG5131 URM1 Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=36.87 E-value=39 Score=26.04 Aligned_cols=43 Identities=14% Similarity=0.189 Sum_probs=31.3
Q ss_pred CCeEEEEEcCCccce--eecCCCCceeecCCCCcEEeCCCCEEEeCCC
Q 010723 427 DGAFYLIDLQSEHGT--YVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 472 (502)
Q Consensus 427 ~~~~~i~d~~s~nGt--~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~ 472 (502)
...+++++-.=+.|+ .||+. -|++-..+.++|++||.|.|-.+
T Consensus 48 ~~sifie~g~lrpGiI~LINd~---DWeLleke~y~ledgDiIvfist 92 (96)
T COG5131 48 RDSIFIEHGELRPGIICLINDM---DWELLEKERYPLEDGDIIVFIST 92 (96)
T ss_pred cceeeecCCCCcccEEEEEcCc---cHhhhhcccccCCCCCEEEEEec
Confidence 456777776667784 46776 35666667899999999988654
No 219
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=36.81 E-value=1.2e+02 Score=29.68 Aligned_cols=57 Identities=19% Similarity=0.239 Sum_probs=41.2
Q ss_pred eeHHHHHHHHHhccCC--CeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCch
Q 010723 25 ISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 83 (502)
Q Consensus 25 i~R~~L~~~L~~~~~~--~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 83 (502)
+.=..|.+.+.+++.. ..+.. ..|.+++..++..+|+..+|+ ++|+.||.|-|....
T Consensus 58 ~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~ 116 (305)
T COG0492 58 ILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGAR 116 (305)
T ss_pred CchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCccc
Confidence 4445777777777633 33433 667777766557778888887 999999999999754
No 220
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=36.08 E-value=83 Score=32.68 Aligned_cols=60 Identities=13% Similarity=0.110 Sum_probs=48.3
Q ss_pred EEEeeHHHHHHHHHhccCC----CeEecCCeEEEEEeeC-CeEEEEEccC----cEEEeeEEEEecCCC
Q 010723 22 TRVISRMTLQQILAKAVGD----EIILNESNVIDFKDHG-DKVSVVLENG----QCYAGDLLIGADGIW 81 (502)
Q Consensus 22 ~~~i~R~~L~~~L~~~~~~----~~v~~~~~v~~i~~~~-~~v~v~~~dg----~~~~adlvVgADG~~ 81 (502)
.+..++..+.+.|.+-|.. ..+.++++|..++... +.+.|...++ .+.-+|.||.|-|-+
T Consensus 84 ~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 84 RYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHY 152 (448)
T ss_pred ccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCc
Confidence 3456677999999887753 3589999999999888 6888888765 356799999999999
No 221
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=35.75 E-value=71 Score=32.58 Aligned_cols=57 Identities=28% Similarity=0.288 Sum_probs=39.2
Q ss_pred HHHHHHHHHhccC--CCeEecCCeEEEEEeeCCeEE-EEEc---cCc--EEEeeEEEEecCCCch
Q 010723 27 RMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVLE---NGQ--CYAGDLLIGADGIWSK 83 (502)
Q Consensus 27 R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~-v~~~---dg~--~~~adlvVgADG~~S~ 83 (502)
-..+.+.|.+.+. .+.++++++++++..+++.|+ +... +|+ .++|+-||-|.|..+.
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 3566777777652 367999999999999887654 4443 454 5789999999999986
No 222
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=34.73 E-value=1.4e+02 Score=28.57 Aligned_cols=44 Identities=18% Similarity=0.075 Sum_probs=31.1
Q ss_pred CCeEecCCeEEEEEeeCCeEEEEEc---cC--cEEEeeEEEEecCCCch
Q 010723 40 DEIILNESNVIDFKDHGDKVSVVLE---NG--QCYAGDLLIGADGIWSK 83 (502)
Q Consensus 40 ~~~v~~~~~v~~i~~~~~~v~v~~~---dg--~~~~adlvVgADG~~S~ 83 (502)
.+.+++++++++++.++....+++. +| .++.+|+||-|-|....
T Consensus 191 gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~ 239 (300)
T TIGR01292 191 NIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPN 239 (300)
T ss_pred CeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCCC
Confidence 4678889999999865532334443 23 57899999999996543
No 223
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=34.05 E-value=84 Score=31.90 Aligned_cols=48 Identities=25% Similarity=0.237 Sum_probs=36.9
Q ss_pred CeEecCCeEEEEEeeCCe-EEEEEccC-----cEEEeeEEEEecCCCchhhccc
Q 010723 41 EIILNESNVIDFKDHGDK-VSVVLENG-----QCYAGDLLIGADGIWSKVRKNL 88 (502)
Q Consensus 41 ~~v~~~~~v~~i~~~~~~-v~v~~~dg-----~~~~adlvVgADG~~S~vR~~l 88 (502)
+.++.+++|.+++..+++ +.+++... ++++.|.||-|.|-+=.+-..+
T Consensus 293 v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL 346 (436)
T COG3486 293 VRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFL 346 (436)
T ss_pred eeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhh
Confidence 568889999999988876 77776542 4789999999999984433333
No 224
>PRK10262 thioredoxin reductase; Provisional
Probab=33.93 E-value=1.4e+02 Score=29.27 Aligned_cols=54 Identities=19% Similarity=0.110 Sum_probs=35.7
Q ss_pred HHHHHHhccC--CCeEecCCeEEEEEeeCCeE-EEEEccC------cEEEeeEEEEecCCCch
Q 010723 30 LQQILAKAVG--DEIILNESNVIDFKDHGDKV-SVVLENG------QCYAGDLLIGADGIWSK 83 (502)
Q Consensus 30 L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v-~v~~~dg------~~~~adlvVgADG~~S~ 83 (502)
+.+.+.+.+. .+.++.++++++++.+++++ .|++.++ +++.+|.||-|-|....
T Consensus 187 ~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~ 249 (321)
T PRK10262 187 LIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPN 249 (321)
T ss_pred HHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccC
Confidence 4555555553 36788899999998665433 3555432 36889999988886543
No 225
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=33.51 E-value=71 Score=32.98 Aligned_cols=43 Identities=23% Similarity=0.189 Sum_probs=35.6
Q ss_pred CeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhhc
Q 010723 41 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRK 86 (502)
Q Consensus 41 ~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~ 86 (502)
+.+++++.|+.++.... +|.+.+|+++.++.+|-|-|. |+.+-
T Consensus 142 Ie~~~~t~v~~~D~~~K--~l~~~~Ge~~kys~LilATGs-~~~~l 184 (478)
T KOG1336|consen 142 IELILGTSVVKADLASK--TLVLGNGETLKYSKLIIATGS-SAKTL 184 (478)
T ss_pred ceEEEcceeEEeecccc--EEEeCCCceeecceEEEeecC-ccccC
Confidence 46888999999987665 678899999999999999999 54443
No 226
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=33.34 E-value=92 Score=32.14 Aligned_cols=44 Identities=18% Similarity=0.224 Sum_probs=33.6
Q ss_pred CCeEecCCeEEEEEeeCCeEEEEE-ccCcEEE--eeEEEEecCCCch
Q 010723 40 DEIILNESNVIDFKDHGDKVSVVL-ENGQCYA--GDLLIGADGIWSK 83 (502)
Q Consensus 40 ~~~v~~~~~v~~i~~~~~~v~v~~-~dg~~~~--adlvVgADG~~S~ 83 (502)
.+.++.+++|++++.++..+++.. .+|++++ +|.||-|-|++..
T Consensus 70 gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~ 116 (444)
T PRK09564 70 GIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPI 116 (444)
T ss_pred CCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCC
Confidence 356778899999988877777654 2356666 9999999998653
No 227
>PTZ00058 glutathione reductase; Provisional
Probab=32.39 E-value=1.2e+02 Score=32.54 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=39.0
Q ss_pred HHHHHHhcc--CCCeEecCCeEEEEEeeCC-eEEEEEccC-cEEEeeEEEEecCCCchhh
Q 010723 30 LQQILAKAV--GDEIILNESNVIDFKDHGD-KVSVVLENG-QCYAGDLLIGADGIWSKVR 85 (502)
Q Consensus 30 L~~~L~~~~--~~~~v~~~~~v~~i~~~~~-~v~v~~~dg-~~~~adlvVgADG~~S~vR 85 (502)
+.+.+.+.+ ..+.++.++++.+++.+++ ++.+.+.++ +++.+|.||-|-|....+.
T Consensus 280 i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~ 339 (561)
T PTZ00058 280 IINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTE 339 (561)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCcc
Confidence 334444443 2467899999999986543 566666554 5799999999999865543
No 228
>PRK07208 hypothetical protein; Provisional
Probab=32.01 E-value=96 Score=32.38 Aligned_cols=56 Identities=20% Similarity=0.311 Sum_probs=37.2
Q ss_pred HHHHHHHhccC--CCeEecCCeEEEEEeeCCeE-E-EEE--ccCc--EEEeeEEEEecCCCchh
Q 010723 29 TLQQILAKAVG--DEIILNESNVIDFKDHGDKV-S-VVL--ENGQ--CYAGDLLIGADGIWSKV 84 (502)
Q Consensus 29 ~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v-~-v~~--~dg~--~~~adlvVgADG~~S~v 84 (502)
.|-+.|.+.+. ...++++++|++|+.+++++ . ++. .+|+ ++.||.||-|=-.+...
T Consensus 219 ~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~ 282 (479)
T PRK07208 219 QLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELV 282 (479)
T ss_pred hHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHH
Confidence 45566666553 35799999999999887653 2 333 2353 68899998876554443
No 229
>PRK08275 putative oxidoreductase; Provisional
Probab=31.37 E-value=1.1e+02 Score=32.71 Aligned_cols=56 Identities=13% Similarity=0.229 Sum_probs=39.7
Q ss_pred HHHHHHHhccC--CCeEecCCeEEEEEee-CCeEE-EE---EccCc--EEEeeEEEEecCCCchh
Q 010723 29 TLQQILAKAVG--DEIILNESNVIDFKDH-GDKVS-VV---LENGQ--CYAGDLLIGADGIWSKV 84 (502)
Q Consensus 29 ~L~~~L~~~~~--~~~v~~~~~v~~i~~~-~~~v~-v~---~~dg~--~~~adlvVgADG~~S~v 84 (502)
.+.+.|.+.+. .+.++.++.++++..+ ++.+. +. ..+|+ .+.|+.||-|.|..+.+
T Consensus 138 ~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~ 202 (554)
T PRK08275 138 DIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRL 202 (554)
T ss_pred HHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcccc
Confidence 46677776553 3678999999999876 44332 22 23564 58999999999998754
No 230
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=31.34 E-value=56 Score=31.29 Aligned_cols=55 Identities=16% Similarity=0.191 Sum_probs=39.8
Q ss_pred CeEEEeeHHHHHHHHHhccCCCeEecCCeEEEEEeeCCeEEEEEccCc-EEEeeEEEEe
Q 010723 20 PVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQ-CYAGDLLIGA 77 (502)
Q Consensus 20 p~~~~i~R~~L~~~L~~~~~~~~v~~~~~v~~i~~~~~~v~v~~~dg~-~~~adlvVgA 77 (502)
|+...-..+.|-++|..-+ +|.++++|+.|...++.+++++++|. ...+|.||-|
T Consensus 100 pyvg~pgmsalak~LAtdL---~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla 155 (331)
T COG3380 100 PYVGEPGMSALAKFLATDL---TVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLA 155 (331)
T ss_pred ccccCcchHHHHHHHhccc---hhhhhhhhhhheecCCeeEEEecCCCcccccceEEEe
Confidence 4444445566777776644 46789999999998999999998774 5667766655
No 231
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=30.70 E-value=43 Score=26.35 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=18.9
Q ss_pred eeecCCCCceeecCCCCcEEeCCCCEEEeCC
Q 010723 441 TYVTDNEGRRYRVSSNFPARFRPSDTIEFGS 471 (502)
Q Consensus 441 t~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~ 471 (502)
.+||+.. ++...+..++|++||+|.|=.
T Consensus 62 VlvN~~d---i~~l~g~~t~L~dgD~v~i~P 89 (94)
T cd01764 62 VLINDTD---WELLGEEDYILEDGDHVVFIS 89 (94)
T ss_pred EEECCcc---ccccCCcccCCCCcCEEEEEC
Confidence 5677761 233345678999999998743
No 232
>PRK08071 L-aspartate oxidase; Provisional
Probab=30.45 E-value=1.2e+02 Score=32.21 Aligned_cols=56 Identities=20% Similarity=0.275 Sum_probs=39.4
Q ss_pred HHHHHHHhccC-CCeEecCCeEEEEEeeCCeEE-EEE--ccCc--EEEeeEEEEecCCCchh
Q 010723 29 TLQQILAKAVG-DEIILNESNVIDFKDHGDKVS-VVL--ENGQ--CYAGDLLIGADGIWSKV 84 (502)
Q Consensus 29 ~L~~~L~~~~~-~~~v~~~~~v~~i~~~~~~v~-v~~--~dg~--~~~adlvVgADG~~S~v 84 (502)
.+.+.|.+.+. .++++.++.++++..+++.+. +.. .+|+ .+.|+.||-|.|..+.+
T Consensus 131 ~i~~~L~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~~ 192 (510)
T PRK08071 131 NLLEHLLQELVPHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCGGL 192 (510)
T ss_pred HHHHHHHHHHhcCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCccc
Confidence 46666766553 467889999999876665433 333 2343 68999999999998763
No 233
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=30.34 E-value=65 Score=33.16 Aligned_cols=58 Identities=16% Similarity=0.264 Sum_probs=41.2
Q ss_pred HHHHHHHhccCC--CeEecCCeEEEEEeeCCeE-EEEEccCcEEEeeEEEEecCCCchhhc
Q 010723 29 TLQQILAKAVGD--EIILNESNVIDFKDHGDKV-SVVLENGQCYAGDLLIGADGIWSKVRK 86 (502)
Q Consensus 29 ~L~~~L~~~~~~--~~v~~~~~v~~i~~~~~~v-~v~~~dg~~~~adlvVgADG~~S~vR~ 86 (502)
.+-.++.+.+.. ..|.+..+|.+|..+++.+ -|.++||++++++.||-=-+.+=+.-+
T Consensus 265 avs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~k 325 (561)
T KOG4254|consen 265 AVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEK 325 (561)
T ss_pred HHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHH
Confidence 455556655532 5688999999998777654 499999999999999965544433333
No 234
>PRK01777 hypothetical protein; Validated
Probab=29.92 E-value=46 Score=26.29 Aligned_cols=29 Identities=10% Similarity=0.107 Sum_probs=21.6
Q ss_pred CccceeecCCCCceeecCCCCcEEeCCCCEEEeCCC
Q 010723 437 SEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 472 (502)
Q Consensus 437 s~nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~ 472 (502)
+.+-..|||+ .... ...|++||.|.|=..
T Consensus 48 ~~~~vgI~Gk-----~v~~--d~~L~dGDRVeIyrP 76 (95)
T PRK01777 48 AKNKVGIYSR-----PAKL--TDVLRDGDRVEIYRP 76 (95)
T ss_pred ccceEEEeCe-----ECCC--CCcCCCCCEEEEecC
Confidence 4567889998 7764 468999999887443
No 235
>PRK09077 L-aspartate oxidase; Provisional
Probab=29.37 E-value=1.4e+02 Score=31.85 Aligned_cols=60 Identities=20% Similarity=0.223 Sum_probs=41.7
Q ss_pred HHHHHHHHhcc---CCCeEecCCeEEEEEeeC------CeEE-EEE---ccCc--EEEeeEEEEecCCCchhhcc
Q 010723 28 MTLQQILAKAV---GDEIILNESNVIDFKDHG------DKVS-VVL---ENGQ--CYAGDLLIGADGIWSKVRKN 87 (502)
Q Consensus 28 ~~L~~~L~~~~---~~~~v~~~~~v~~i~~~~------~~v~-v~~---~dg~--~~~adlvVgADG~~S~vR~~ 87 (502)
..+...|.+++ +++.++.++.++++..++ +.|. |.+ .+|+ .+.++.||.|.|..+.+...
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~~~ 212 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKVYLY 212 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCCCCC
Confidence 35677777654 346789999999987543 4333 333 2454 58999999999999976653
No 236
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=28.31 E-value=1.7e+02 Score=31.54 Aligned_cols=57 Identities=23% Similarity=0.226 Sum_probs=40.0
Q ss_pred HHHHHHHHhccC--CCeEecCCeEEEEEeeC----CeEE-EE---EccCc--EEEeeEEEEecCCCchh
Q 010723 28 MTLQQILAKAVG--DEIILNESNVIDFKDHG----DKVS-VV---LENGQ--CYAGDLLIGADGIWSKV 84 (502)
Q Consensus 28 ~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~----~~v~-v~---~~dg~--~~~adlvVgADG~~S~v 84 (502)
..+.+.|.+.+. .+.++.++.++++..++ +.|. +. ..+|+ .+.|+-||.|.|..+.+
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 208 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRV 208 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCccc
Confidence 356677777653 36789999999987654 3332 22 24554 57999999999998865
No 237
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=27.87 E-value=1.6e+02 Score=32.15 Aligned_cols=53 Identities=19% Similarity=0.358 Sum_probs=37.4
Q ss_pred HHHHhcc--CCCeEecCCeEEEEEeeCCeEE-EEEc---cCc--EEEeeEEEEecCCCchh
Q 010723 32 QILAKAV--GDEIILNESNVIDFKDHGDKVS-VVLE---NGQ--CYAGDLLIGADGIWSKV 84 (502)
Q Consensus 32 ~~L~~~~--~~~~v~~~~~v~~i~~~~~~v~-v~~~---dg~--~~~adlvVgADG~~S~v 84 (502)
+.|.+.+ .++.+++++.++++..+++.|. |... +|+ .+.|+.||-|.|..+.+
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~ 234 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGNV 234 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCcccC
Confidence 4444444 3467999999999987666543 3332 454 58999999999998865
No 238
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=27.44 E-value=1.5e+02 Score=31.76 Aligned_cols=55 Identities=20% Similarity=0.125 Sum_probs=39.5
Q ss_pred HHHHHHHhccC--CCeEecCCeEEEEEeeCCe-EE-EEE---ccCc--EEEeeEEEEecCCCch
Q 010723 29 TLQQILAKAVG--DEIILNESNVIDFKDHGDK-VS-VVL---ENGQ--CYAGDLLIGADGIWSK 83 (502)
Q Consensus 29 ~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~-v~-v~~---~dg~--~~~adlvVgADG~~S~ 83 (502)
.+...|.+.+. .+.+++++.++++..++++ |. +.. .+|+ .+.|+-||.|.|..+.
T Consensus 135 ~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 135 EMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred HHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence 46666666553 3678999999999876554 43 222 4564 5899999999999875
No 239
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=27.20 E-value=83 Score=31.39 Aligned_cols=40 Identities=15% Similarity=0.072 Sum_probs=31.2
Q ss_pred CeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCch
Q 010723 41 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 83 (502)
Q Consensus 41 ~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 83 (502)
+.++. .+|++++.+.. +|.+++|+++++|.||-|-|+...
T Consensus 69 v~~~~-~~v~~id~~~~--~V~~~~g~~~~yD~LviAtG~~~~ 108 (364)
T TIGR03169 69 ARFVI-AEATGIDPDRR--KVLLANRPPLSYDVLSLDVGSTTP 108 (364)
T ss_pred CEEEE-EEEEEEecccC--EEEECCCCcccccEEEEccCCCCC
Confidence 45555 47888887665 566788989999999999998654
No 240
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=26.15 E-value=1.2e+02 Score=34.23 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=33.9
Q ss_pred CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCc
Q 010723 40 DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWS 82 (502)
Q Consensus 40 ~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S 82 (502)
++.++.+++|++|+.+.. +|++.+|+++.+|.||-|-|+..
T Consensus 68 gv~~~~g~~V~~Id~~~k--~V~~~~g~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 68 GITLYTGETVIQIDTDQK--QVITDAGRTLSYDKLILATGSYP 108 (785)
T ss_pred CCEEEcCCeEEEEECCCC--EEEECCCcEeeCCEEEECCCCCc
Confidence 467889999999986654 46677898999999999999864
No 241
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=25.86 E-value=61 Score=24.12 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=18.0
Q ss_pred cceeecCCCCceeecCCCCcEEeCCCCEEEeC
Q 010723 439 HGTYVTDNEGRRYRVSSNFPARFRPSDTIEFG 470 (502)
Q Consensus 439 nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g 470 (502)
.-.+||++ .++ ....|++||.|.|=
T Consensus 50 ~~v~vNg~-----~v~--~~~~l~~gD~v~i~ 74 (80)
T cd00754 50 VRIAVNGE-----YVR--LDTPLKDGDEVAII 74 (80)
T ss_pred EEEEECCe-----EcC--CCcccCCCCEEEEe
Confidence 34667887 665 35679999999863
No 242
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=25.57 E-value=2.4e+02 Score=29.90 Aligned_cols=41 Identities=15% Similarity=0.323 Sum_probs=28.4
Q ss_pred CCeEecCCeEEEEEeeCCeEE-EEE-ccCc--EEEee--EEEEecCC
Q 010723 40 DEIILNESNVIDFKDHGDKVS-VVL-ENGQ--CYAGD--LLIGADGI 80 (502)
Q Consensus 40 ~~~v~~~~~v~~i~~~~~~v~-v~~-~dg~--~~~ad--lvVgADG~ 80 (502)
.++++++++++++..+++.|. |.. .+|+ .+.|+ +|++|+|.
T Consensus 188 gv~i~~~t~~~~Li~~~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~ 234 (513)
T PRK12837 188 NARLRLNTPLVELVVEDGRVVGAVVERGGERRRVRARRGVLLAAGGF 234 (513)
T ss_pred CCEEEeCCEEEEEEecCCEEEEEEEEECCcEEEEEeCceEEEeCCCc
Confidence 467999999999987766443 222 2443 57886 77777775
No 243
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=25.54 E-value=1.6e+02 Score=30.34 Aligned_cols=39 Identities=21% Similarity=0.111 Sum_probs=30.4
Q ss_pred cCCeEEEEEeeCCeEEEEE--------ccCcEEEeeEEEEecCCCch
Q 010723 45 NESNVIDFKDHGDKVSVVL--------ENGQCYAGDLLIGADGIWSK 83 (502)
Q Consensus 45 ~~~~v~~i~~~~~~v~v~~--------~dg~~~~adlvVgADG~~S~ 83 (502)
...+|++|+.++..|++.. .+|.++.+|.||-|-|+...
T Consensus 80 i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~ 126 (424)
T PTZ00318 80 LRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPN 126 (424)
T ss_pred EEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccC
Confidence 3468999988888777633 35678999999999999753
No 244
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=25.37 E-value=1.5e+02 Score=30.36 Aligned_cols=42 Identities=24% Similarity=0.257 Sum_probs=32.3
Q ss_pred CeEecCCeEEEEEeeCCeEEEEEcc-CcEEE--eeEEEEecCCCc
Q 010723 41 EIILNESNVIDFKDHGDKVSVVLEN-GQCYA--GDLLIGADGIWS 82 (502)
Q Consensus 41 ~~v~~~~~v~~i~~~~~~v~v~~~d-g~~~~--adlvVgADG~~S 82 (502)
+.++.+++|++++.++..+.+...+ +++++ +|.||-|-|++.
T Consensus 59 v~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p 103 (427)
T TIGR03385 59 IDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASP 103 (427)
T ss_pred CeEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCC
Confidence 5577789999998777777665432 45777 999999999854
No 245
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=25.17 E-value=60 Score=22.78 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=16.5
Q ss_pred cceeecCCCCceeecCCCCcEEeCCCCEEEe
Q 010723 439 HGTYVTDNEGRRYRVSSNFPARFRPSDTIEF 469 (502)
Q Consensus 439 nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~ 469 (502)
...+|||. .+.. ....|+.||.|.|
T Consensus 34 G~V~VNg~-----~~~~-~~~~l~~Gd~v~i 58 (59)
T TIGR02988 34 NEVLVNGE-----LENR-RGKKLYPGDVIEI 58 (59)
T ss_pred CCEEECCE-----EccC-CCCCCCCCCEEEe
Confidence 34667776 5521 2457999999976
No 246
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=25.00 E-value=1.4e+02 Score=30.04 Aligned_cols=40 Identities=20% Similarity=0.205 Sum_probs=31.1
Q ss_pred CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCc
Q 010723 40 DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWS 82 (502)
Q Consensus 40 ~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S 82 (502)
++.++.+++|++++.+...+ ++ ++.++.+|.||-|-|+..
T Consensus 72 gv~~~~~~~V~~id~~~~~v--~~-~~~~~~yd~LVlATG~~~ 111 (377)
T PRK04965 72 NLRLFPHTWVTDIDAEAQVV--KS-QGNQWQYDKLVLATGASA 111 (377)
T ss_pred CCEEECCCEEEEEECCCCEE--EE-CCeEEeCCEEEECCCCCC
Confidence 35678889999998765533 33 577899999999999864
No 247
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=24.96 E-value=52 Score=23.52 Aligned_cols=12 Identities=8% Similarity=0.368 Sum_probs=10.0
Q ss_pred cEEeCCCCEEEe
Q 010723 458 PARFRPSDTIEF 469 (502)
Q Consensus 458 ~~~l~~gd~i~~ 469 (502)
...|++||.|.|
T Consensus 47 ~~~L~~gD~vei 58 (65)
T PRK06944 47 ARALAAGDRLDL 58 (65)
T ss_pred cccCCCCCEEEE
Confidence 567999999876
No 248
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=24.93 E-value=56 Score=25.05 Aligned_cols=24 Identities=13% Similarity=0.274 Sum_probs=15.3
Q ss_pred eeecCCCCceeecCCCCcEEeCCCCEEEe
Q 010723 441 TYVTDNEGRRYRVSSNFPARFRPSDTIEF 469 (502)
Q Consensus 441 t~vn~~~~~~~~~~~~~~~~l~~gd~i~~ 469 (502)
..||++ .+......+|++||+|.|
T Consensus 58 v~vN~~-----~v~~~~~~~l~dgdev~i 81 (88)
T TIGR01687 58 ILVNGR-----NVDWGLGTELKDGDVVAI 81 (88)
T ss_pred EEECCE-----ecCccCCCCCCCCCEEEE
Confidence 455665 444332257999999876
No 249
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=24.69 E-value=1.8e+02 Score=31.32 Aligned_cols=60 Identities=15% Similarity=0.131 Sum_probs=40.0
Q ss_pred HHHHHHHhccC--CCeEecCCeEEEEEeeCCeEE-EEEc-cCc--EEEe-eEEEEecCCCchhhccc
Q 010723 29 TLQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVLE-NGQ--CYAG-DLLIGADGIWSKVRKNL 88 (502)
Q Consensus 29 ~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~-v~~~-dg~--~~~a-dlvVgADG~~S~vR~~l 88 (502)
.|...|.+.+. .+.++.+++++++..+++.|+ |... +|+ .+.| +-||-|-|..+.-.+.+
T Consensus 222 ~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~ 288 (578)
T PRK12843 222 ALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLR 288 (578)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHH
Confidence 35556666553 367899999999887666443 3333 343 4676 68888999988754444
No 250
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=24.40 E-value=61 Score=28.88 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=31.1
Q ss_pred CeEecCCeEEEEEeeCCeE-----EEE---EccCcEEEeeEEEEecCCCch
Q 010723 41 EIILNESNVIDFKDHGDKV-----SVV---LENGQCYAGDLLIGADGIWSK 83 (502)
Q Consensus 41 ~~v~~~~~v~~i~~~~~~v-----~v~---~~dg~~~~adlvVgADG~~S~ 83 (502)
.+++.++++.+++.....+ .+. ..++.++.+|.||.|.|.++.
T Consensus 73 v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~ 123 (201)
T PF07992_consen 73 VEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPR 123 (201)
T ss_dssp HEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEE
T ss_pred EEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccc
Confidence 5576789999998877642 232 234568999999999996644
No 251
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=24.38 E-value=2.3e+02 Score=30.52 Aligned_cols=56 Identities=18% Similarity=0.150 Sum_probs=39.8
Q ss_pred HHHHHHHhccC--CCeEecCCeEEEEEeeCCeEE-EEEc---cCc--EEEeeEEEEecCCCchh
Q 010723 29 TLQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVLE---NGQ--CYAGDLLIGADGIWSKV 84 (502)
Q Consensus 29 ~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~-v~~~---dg~--~~~adlvVgADG~~S~v 84 (502)
.+.+.|.+.+. .+.++.++.++++..+++.|. +... +|+ .+.|+-||-|.|..+.+
T Consensus 137 ~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l 200 (566)
T PRK06452 137 ALLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMGML 200 (566)
T ss_pred HHHHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccccc
Confidence 45666666552 367899999999988766544 3332 333 57899999999998854
No 252
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=24.36 E-value=2.3e+02 Score=30.57 Aligned_cols=55 Identities=22% Similarity=0.192 Sum_probs=36.0
Q ss_pred HHHHHHHhccC--CCeEecCCeEEEEEeeCCeEE-EEEc--cCc-EEEee-EEEEecCCCch
Q 010723 29 TLQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVLE--NGQ-CYAGD-LLIGADGIWSK 83 (502)
Q Consensus 29 ~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~-v~~~--dg~-~~~ad-lvVgADG~~S~ 83 (502)
.|.+.|.+.+. .++++++++|+++..+++.|+ |... +++ .+.++ -||-|-|..+.
T Consensus 215 ~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 276 (574)
T PRK12842 215 ALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFSH 276 (574)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccc
Confidence 35555655442 367999999999987766543 4343 343 47785 67778887763
No 253
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=24.05 E-value=46 Score=23.92 Aligned_cols=12 Identities=25% Similarity=0.310 Sum_probs=10.3
Q ss_pred cEEeCCCCEEEe
Q 010723 458 PARFRPSDTIEF 469 (502)
Q Consensus 458 ~~~l~~gd~i~~ 469 (502)
.+.|++||.|.|
T Consensus 47 ~~~L~dgD~Iei 58 (65)
T PRK06488 47 QFVLHEGDRIEI 58 (65)
T ss_pred ccccCCCCEEEE
Confidence 578999999976
No 254
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=23.82 E-value=58 Score=23.34 Aligned_cols=12 Identities=25% Similarity=0.423 Sum_probs=10.0
Q ss_pred cEEeCCCCEEEe
Q 010723 458 PARFRPSDTIEF 469 (502)
Q Consensus 458 ~~~l~~gd~i~~ 469 (502)
...|++||.|.|
T Consensus 46 ~~~L~~gD~vei 57 (64)
T TIGR01683 46 DTILKEGDRIEI 57 (64)
T ss_pred ceecCCCCEEEE
Confidence 467999999876
No 255
>PLN02546 glutathione reductase
Probab=23.77 E-value=2.1e+02 Score=30.82 Aligned_cols=46 Identities=11% Similarity=0.026 Sum_probs=34.3
Q ss_pred CCeEecCCeEEEEEeeC-CeEEEEEccCcEEEeeEEEEecCCCchhh
Q 010723 40 DEIILNESNVIDFKDHG-DKVSVVLENGQCYAGDLLIGADGIWSKVR 85 (502)
Q Consensus 40 ~~~v~~~~~v~~i~~~~-~~v~v~~~dg~~~~adlvVgADG~~S~vR 85 (502)
.+.++.++++++++.++ +.+.+.+.+++...+|.||-|=|....+.
T Consensus 307 GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 307 GIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred CcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCC
Confidence 46789999999997643 44556665555555899999999887664
No 256
>PRK10348 ribosome-associated heat shock protein Hsp15; Provisional
Probab=23.70 E-value=1.1e+02 Score=25.90 Aligned_cols=34 Identities=12% Similarity=0.028 Sum_probs=22.7
Q ss_pred eeecCCCCceeecCCCCcEEeCCCCEEEeCCCceEEEEEEEe
Q 010723 441 TYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVI 482 (502)
Q Consensus 441 t~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~~~~ 482 (502)
+.|||. +..|+ ..+++||+|.|-.. ...+.+++.
T Consensus 36 V~vnG~-----~~Kps--~~V~~gd~l~v~~~-~~~~~v~Vl 69 (133)
T PRK10348 36 VHYNGQ-----RSKPS--KIVELNATLTLRQG-NDERTVIVK 69 (133)
T ss_pred EEECCE-----ECCCC--CccCCCCEEEEEEC-CEEEEEEEe
Confidence 556776 65554 46789999988665 346666664
No 257
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=23.60 E-value=1.4e+02 Score=33.90 Aligned_cols=42 Identities=19% Similarity=0.159 Sum_probs=33.8
Q ss_pred CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCch
Q 010723 40 DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 83 (502)
Q Consensus 40 ~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 83 (502)
++.++.+++|++++.+.. +|++.+|+++.+|.||-|-|++..
T Consensus 73 gI~~~~g~~V~~Id~~~~--~V~~~~G~~i~yD~LVIATGs~p~ 114 (847)
T PRK14989 73 GIKVLVGERAITINRQEK--VIHSSAGRTVFYDKLIMATGSYPW 114 (847)
T ss_pred CCEEEcCCEEEEEeCCCc--EEEECCCcEEECCEEEECCCCCcC
Confidence 467888999999876543 456778889999999999998654
No 258
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=23.58 E-value=7.5e+02 Score=24.76 Aligned_cols=66 Identities=23% Similarity=0.277 Sum_probs=48.1
Q ss_pred eEEEeeHHHHHHHHHhccCC--CeEecCCeEEEEEe---eCCeEEEEEccCcEEEeeEEEEecCCC--chhhc
Q 010723 21 VTRVISRMTLQQILAKAVGD--EIILNESNVIDFKD---HGDKVSVVLENGQCYAGDLLIGADGIW--SKVRK 86 (502)
Q Consensus 21 ~~~~i~R~~L~~~L~~~~~~--~~v~~~~~v~~i~~---~~~~v~v~~~dg~~~~adlvVgADG~~--S~vR~ 86 (502)
.|-++.=..-.++|.+.+.. +.++.+.+|+.++. ++..|.|.+.+|+.+.|+=+|-+=|+. +-++.
T Consensus 146 ~gGvi~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~ 218 (399)
T KOG2820|consen 146 SGGVINAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLPT 218 (399)
T ss_pred cccEeeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcCc
Confidence 34456666666677776643 56899999988773 345688899999999999999999973 44444
No 259
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=23.54 E-value=48 Score=21.98 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=16.2
Q ss_pred cceeecCCCCceeecCCCCcEEeCCCCEE
Q 010723 439 HGTYVTDNEGRRYRVSSNFPARFRPSDTI 467 (502)
Q Consensus 439 nGt~vn~~~~~~~~~~~~~~~~l~~gd~i 467 (502)
++.+|||+ .+.. ....+++||+|
T Consensus 26 g~V~VNg~-----~v~~-~~~~v~~~d~I 48 (48)
T PF01479_consen 26 GRVKVNGK-----VVKD-PSYIVKPGDVI 48 (48)
T ss_dssp TTEEETTE-----EESS-TTSBESTTEEE
T ss_pred CEEEECCE-----EEcC-CCCCCCCcCCC
Confidence 56788887 7762 23568888876
No 260
>PRK07512 L-aspartate oxidase; Provisional
Probab=23.07 E-value=1.7e+02 Score=31.06 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=38.7
Q ss_pred HHHHHHHhccC---CCeEecCCeEEEEEeeCCeEE-EEEc-cCc--EEEeeEEEEecCCCchh
Q 010723 29 TLQQILAKAVG---DEIILNESNVIDFKDHGDKVS-VVLE-NGQ--CYAGDLLIGADGIWSKV 84 (502)
Q Consensus 29 ~L~~~L~~~~~---~~~v~~~~~v~~i~~~~~~v~-v~~~-dg~--~~~adlvVgADG~~S~v 84 (502)
.+.+.|.+.+. .+.++.++.++++..+++.|. +... ++. .+.|+-||-|.|..+..
T Consensus 137 ~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~~~ 199 (513)
T PRK07512 137 AIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGIGGL 199 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCCcCC
Confidence 56667766552 467889999999876555433 3332 332 58999999999997753
No 261
>PF10387 DUF2442: Protein of unknown function (DUF2442); InterPro: IPR018841 Several proteins in this entry are annotated as being putative molybdopterin-guanine dinucleotide biosynthesis proteins, but this has not been confirmed. The function of these proteins is therefore not known. ; PDB: 2AUW_B 2X8N_A 3K8R_B.
Probab=22.85 E-value=1.4e+02 Score=22.33 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=17.4
Q ss_pred EEEEEeeCC-eEEEEEccCcEEEeeE
Q 010723 49 VIDFKDHGD-KVSVVLENGQCYAGDL 73 (502)
Q Consensus 49 v~~i~~~~~-~v~v~~~dg~~~~adl 73 (502)
|+++...++ .+.|+|+||++...|+
T Consensus 1 i~~V~~~~~~~L~v~f~dG~~~~~dl 26 (79)
T PF10387_consen 1 IISVKPLDDYRLRVTFSDGETRIFDL 26 (79)
T ss_dssp -EEEEEETTTEEEEEETTS-EEEEEC
T ss_pred CeEEEEcCCcEEEEEEcCCCEEEEEh
Confidence 356666666 8899999998776664
No 262
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=22.81 E-value=3.3e+02 Score=27.52 Aligned_cols=52 Identities=15% Similarity=0.382 Sum_probs=25.6
Q ss_pred CCCEEEcCCCCCCCCCceeeeCC---------------ccccccceEEEEeCC-----eEEEEEcCCccceeecC
Q 010723 391 NEPYLIGSESHEDFSRTSIVIPS---------------AQVSKMHARISYKDG-----AFYLIDLQSEHGTYVTD 445 (502)
Q Consensus 391 ~~~~~iGR~~~~~~~~~~i~~~~---------------~~vSr~Ha~i~~~~~-----~~~i~d~~s~nGt~vn~ 445 (502)
...+-|||+.+.. +|.++.| .+|||.-|+|.++-. +.|---.+|.+-.|+..
T Consensus 95 tDMFQIGRSte~~---IDFvV~dt~~G~~~~~~~~~~qStISRfACRI~~dR~pPy~ariyAAGFDss~nIfLge 166 (416)
T PF04710_consen 95 TDMFQIGRSTESP---IDFVVMDTVPGGQDNEDTQPTQSTISRFACRILCDRSPPYTARIYAAGFDSSRNIFLGE 166 (416)
T ss_dssp EEEEEEES--STT----SEE---------------EEE--S-TT-EEEEEESSTT--EEEEEC---TTSEEEE-T
T ss_pred cchhhhccCCCCC---cCEEEeCCCCCCCcCCCCCccccchhheeEEEEeccCCCceEEEEeeccCcccceeehh
Confidence 4558899999886 5565532 469999999998722 23333344556666644
No 263
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=22.74 E-value=52 Score=23.66 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=16.0
Q ss_pred cceeecCCCCceeecCCCCcEEeCCCCEEEe
Q 010723 439 HGTYVTDNEGRRYRVSSNFPARFRPSDTIEF 469 (502)
Q Consensus 439 nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~ 469 (502)
||.+|... .. ....|++||.|.|
T Consensus 37 Ng~iv~r~-----~~---~~~~l~~gD~vei 59 (66)
T PRK05659 37 NGEIVPRS-----QH---ASTALREGDVVEI 59 (66)
T ss_pred CCeEeCHH-----Hc---CcccCCCCCEEEE
Confidence 56666554 22 3567999999976
No 264
>PRK06437 hypothetical protein; Provisional
Probab=22.59 E-value=88 Score=22.78 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=15.5
Q ss_pred eeecCCCCceeecCCCCcEEeCCCCEEEe
Q 010723 441 TYVTDNEGRRYRVSSNFPARFRPSDTIEF 469 (502)
Q Consensus 441 t~vn~~~~~~~~~~~~~~~~l~~gd~i~~ 469 (502)
..+||. .++ ....|++||.|.|
T Consensus 39 V~vNg~-----iv~--~~~~L~dgD~Vei 60 (67)
T PRK06437 39 VIVNGS-----PVL--EDHNVKKEDDVLI 60 (67)
T ss_pred EEECCE-----ECC--CceEcCCCCEEEE
Confidence 445665 554 4568999999876
No 265
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=22.17 E-value=3.1e+02 Score=29.75 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=32.6
Q ss_pred CCeEecCCeEEEEEeeCC-eEE-EEEc---cCc--EEEeeEEEEecCCCchh
Q 010723 40 DEIILNESNVIDFKDHGD-KVS-VVLE---NGQ--CYAGDLLIGADGIWSKV 84 (502)
Q Consensus 40 ~~~v~~~~~v~~i~~~~~-~v~-v~~~---dg~--~~~adlvVgADG~~S~v 84 (502)
++.++++++++++..+++ .|. |... +|+ .+.|+.||-|.|..+.+
T Consensus 147 gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~ 198 (603)
T TIGR01811 147 LVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGYGNV 198 (603)
T ss_pred CcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcCc
Confidence 467899999999986543 332 3332 453 57999999999998754
No 266
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=21.94 E-value=1.8e+02 Score=30.01 Aligned_cols=44 Identities=20% Similarity=0.183 Sum_probs=33.6
Q ss_pred CCeEecCCeEEEEEeeCCeEEEEEcc-Cc--EEEeeEEEEecCCCch
Q 010723 40 DEIILNESNVIDFKDHGDKVSVVLEN-GQ--CYAGDLLIGADGIWSK 83 (502)
Q Consensus 40 ~~~v~~~~~v~~i~~~~~~v~v~~~d-g~--~~~adlvVgADG~~S~ 83 (502)
++.++.+++|++|+.++..|.+...+ ++ ++.+|.||-|-|++..
T Consensus 72 ~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~ 118 (438)
T PRK13512 72 QITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASAN 118 (438)
T ss_pred CCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCC
Confidence 35678889999999888777666543 23 4689999999998763
No 267
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=21.63 E-value=83 Score=22.57 Aligned_cols=12 Identities=25% Similarity=0.457 Sum_probs=10.0
Q ss_pred cEEeCCCCEEEe
Q 010723 458 PARFRPSDTIEF 469 (502)
Q Consensus 458 ~~~l~~gd~i~~ 469 (502)
...|++||.|.|
T Consensus 47 ~~~L~~gD~V~i 58 (65)
T cd00565 47 STPLQDGDRIEI 58 (65)
T ss_pred ceecCCCCEEEE
Confidence 478999999876
No 268
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=20.83 E-value=3.1e+02 Score=29.02 Aligned_cols=43 Identities=19% Similarity=0.232 Sum_probs=31.8
Q ss_pred CCeEecCCeEEEEEeeCCeEE-EEEccC-----cEEEeeEEEEecCCCc
Q 010723 40 DEIILNESNVIDFKDHGDKVS-VVLENG-----QCYAGDLLIGADGIWS 82 (502)
Q Consensus 40 ~~~v~~~~~v~~i~~~~~~v~-v~~~dg-----~~~~adlvVgADG~~S 82 (502)
++.+++++.+++++.+++.++ |++.++ +++.+|.||.|=|...
T Consensus 402 gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~P 450 (515)
T TIGR03140 402 NVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVP 450 (515)
T ss_pred CCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcC
Confidence 467899999999987655554 666542 3688999998888754
No 269
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=20.69 E-value=67 Score=23.20 Aligned_cols=13 Identities=15% Similarity=0.092 Sum_probs=10.3
Q ss_pred CcEEeCCCCEEEe
Q 010723 457 FPARFRPSDTIEF 469 (502)
Q Consensus 457 ~~~~l~~gd~i~~ 469 (502)
..+.|++||.|.|
T Consensus 47 ~~~~L~~gD~Iei 59 (66)
T PRK08053 47 AQHIVQDGDQILL 59 (66)
T ss_pred CccccCCCCEEEE
Confidence 3567999999876
No 270
>smart00363 S4 S4 RNA-binding domain.
Probab=20.59 E-value=1.2e+02 Score=20.37 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=18.7
Q ss_pred cceeecCCCCceeec-CCCCcEEeCCCCEEEeCC
Q 010723 439 HGTYVTDNEGRRYRV-SSNFPARFRPSDTIEFGS 471 (502)
Q Consensus 439 nGt~vn~~~~~~~~~-~~~~~~~l~~gd~i~~g~ 471 (502)
+..+|||. .+ .+ ...+..||.|.+-.
T Consensus 26 g~i~vng~-----~~~~~--~~~l~~gd~i~~~~ 52 (60)
T smart00363 26 GRVKVNGK-----KVTKP--SYIVKPGDVISVRG 52 (60)
T ss_pred CCEEECCE-----EecCC--CeEeCCCCEEEEcc
Confidence 45778887 66 33 45788999988754
No 271
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=20.31 E-value=2.5e+02 Score=30.14 Aligned_cols=56 Identities=18% Similarity=0.185 Sum_probs=38.4
Q ss_pred eHHHHHHHHHhccC--CCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCch
Q 010723 26 SRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 83 (502)
Q Consensus 26 ~R~~L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 83 (502)
....+.+.+.+.+. .+.+ ..++|++++.+++...+...+| .+.++.||-|-|+++.
T Consensus 58 ~~~~l~~~l~~~~~~~gv~~-~~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~ 115 (555)
T TIGR03143 58 TGPELMQEMRQQAQDFGVKF-LQAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPR 115 (555)
T ss_pred CHHHHHHHHHHHHHHcCCEE-eccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccC
Confidence 33456666665542 2444 3678888887666666777665 6899999999999754
No 272
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=20.27 E-value=3.3e+02 Score=29.16 Aligned_cols=54 Identities=19% Similarity=0.170 Sum_probs=33.1
Q ss_pred HHHHHHhccC--CCeEecCCeEEEEEeeCCeEE-EEEc-cCc--EEEee-EEEEecCCCch
Q 010723 30 LQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVLE-NGQ--CYAGD-LLIGADGIWSK 83 (502)
Q Consensus 30 L~~~L~~~~~--~~~v~~~~~v~~i~~~~~~v~-v~~~-dg~--~~~ad-lvVgADG~~S~ 83 (502)
+...|.+.+. .++++++++++++..+++.|+ |... +++ .+.|+ -||-|-|..+.
T Consensus 210 ~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~ 270 (557)
T PRK07843 210 LAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEH 270 (557)
T ss_pred HHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCc
Confidence 4445555443 367999999999988766544 3333 443 47885 35555555444
Done!