BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010724
(502 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BP1|A Chain A, Crystal Structure Of Bpi, The Human Bactericidal
Permeability-Increasing Protein
Length = 456
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 103/437 (23%), Positives = 189/437 (43%), Gaps = 31/437 (7%)
Query: 37 IIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNITIYNIDVLSS 96
+ ISQ GLD+ + + +P + KI LG ++ I + SS
Sbjct: 7 VRISQKGLDYASQQGTAALQKELKRIKIPDYSDSFKIKHLGKGHYSFYSMDIREFQLPSS 66
Query: 97 YVKP-GDTGVVFVAYGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVG--LTLG 153
+ + G+ F +S W + + G + +EGM + L LG
Sbjct: 67 QISMVPNVGLKFSISNANIKISGKWKAQKRFLKM------SGNFDLSIEGMSISADLKLG 120
Query: 154 LETQKGTLKLSLVDCGCYVKDISIKLDGGA-SWLYQGMINAFEEQIVSAVENAITKKLKE 212
G ++ C ++ + + + WL I F ++I SA+ N + ++ E
Sbjct: 121 SNPTSGKPTITCSSCSSHINSVHVHISKSKVGWL----IQLFHKKIESALRNKMNSQVCE 176
Query: 213 GI-----SKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKASI 267
+ SKL Q+LP +D A +N V P T+ +++ + G F + +
Sbjct: 177 KVTNSVSSKLQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKGEFYSENHHNP 236
Query: 268 PNYYNSNLQPPV--FCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTV--DKVPDQS-- 321
P + PPV F + +M+ + L + N+A +Y +A ++ T+ D +P +S
Sbjct: 237 PPF-----APPVMEFPAAHDRMVYLGLSDYFFNTAGLVYQEAGVLKMTLRDDMIPKESKF 291
Query: 322 LLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADL-IIDVLESGE 380
L T + +P++ +K+PN + +++S S+PP + V + D+ VL +
Sbjct: 292 RLTTKFFGTFLPEVAKKFPNMKIQIHVSASTPPHLSVQPTGLTFYPAVDVQAFAVLPNSA 351
Query: 381 VIPVACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQT 440
+ + I + GS V N L G +KL+ + L S IG + L+Q ++ ++
Sbjct: 352 LASLFLIGMHTTGSMEVSAESNRLVGELKLDRLLLELKHSNIGPFPVELLQDIMNYIVPI 411
Query: 441 VFVPYVNSHLGQGFPLP 457
+ +P VN L +GFPLP
Sbjct: 412 LVLPRVNEKLQKGFPLP 428
>pdb|1EWF|A Chain A, The 1.7 Angstrom Crystal Structure Of Bpi
Length = 456
Score = 108 bits (270), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 102/437 (23%), Positives = 189/437 (43%), Gaps = 31/437 (7%)
Query: 37 IIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNITIYNIDVLSS 96
+ ISQ GLD+ + + +P + KI LG ++ I + SS
Sbjct: 7 VRISQKGLDYASQQGTAALQKELKRIKIPDYSDSFKIKHLGKGHYSFYSMDIREFQLPSS 66
Query: 97 YVKP-GDTGVVFVAYGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVG--LTLG 153
+ + G+ F +S W + + G + +EGM + L LG
Sbjct: 67 QISMVPNVGLKFSISNANIKISGKWKAQKRFLKM------SGNFDLSIEGMSISADLKLG 120
Query: 154 LETQKGTLKLSLVDCGCYVKDISIKLDGGA-SWLYQGMINAFEEQIVSAVENAITKKLKE 212
G ++ C ++ + + + WL I F ++I SA+ N + ++ E
Sbjct: 121 SNPTSGKPTITCSSCSSHINSVHVHISKSKVGWL----IQLFHKKIESALRNKMNSQVCE 176
Query: 213 GI-----SKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKASI 267
+ S+L Q+LP +D A +N V P T+ +++ + G F + +
Sbjct: 177 KVTNSVSSELQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKGEFYSENHHNP 236
Query: 268 PNYYNSNLQPPV--FCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTV--DKVPDQS-- 321
P + PPV F + +M+ + L + N+A +Y +A ++ T+ D +P +S
Sbjct: 237 PPF-----APPVMEFPAAHDRMVYLGLSDYFFNTAGLVYQEAGVLKMTLRDDMIPKESKF 291
Query: 322 LLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADL-IIDVLESGE 380
L T + +P++ +K+PN + +++S S+PP + V + D+ VL +
Sbjct: 292 RLTTKFFGTFLPEVAKKFPNMKIQIHVSASTPPHLSVQPTGLTFYPAVDVQAFAVLPNSA 351
Query: 381 VIPVACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQT 440
+ + I + GS V N L G +KL+ + L S IG + L+Q ++ ++
Sbjct: 352 LASLFLIGMHTTGSMEVSAESNRLVGELKLDRLLLELKHSNIGPFPVELLQDIMNYIVPI 411
Query: 441 VFVPYVNSHLGQGFPLP 457
+ +P VN L +GFPLP
Sbjct: 412 LVLPRVNEKLQKGFPLP 428
>pdb|2J2M|A Chain A, Crystal Structure Analysis Of Catalase From
Exiguobacterium Oxidotolerans
pdb|2J2M|B Chain B, Crystal Structure Analysis Of Catalase From
Exiguobacterium Oxidotolerans
pdb|2J2M|C Chain C, Crystal Structure Analysis Of Catalase From
Exiguobacterium Oxidotolerans
pdb|2J2M|D Chain D, Crystal Structure Analysis Of Catalase From
Exiguobacterium Oxidotolerans
Length = 491
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 377 ESGEVIPV-ACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIG 423
E G +PV A S VIHG+ S + LR+ G SVK +T W +G
Sbjct: 83 EEGTEVPVFARFSTVIHGTHSPETLRDPRGFSVKF--YTEEGNWDFVG 128
>pdb|3H5Q|A Chain A, Crystal Structure Of A Putative Pyrimidine-Nucleoside
Phosphorylase From Staphylococcus Aureus
Length = 436
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 242 DNPLLTSSSIEFDINGLFTARKKASIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSAS 301
D LT+ I F I G K IP+Y S+L ++ D + ++L A +NS
Sbjct: 15 DGHTLTTEEINFFIGGYV----KGDIPDYQASSLAXAIYFQDXNDDERVALTXAXVNSGD 70
Query: 302 AL 303
+
Sbjct: 71 XI 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,732,574
Number of Sequences: 62578
Number of extensions: 554951
Number of successful extensions: 1190
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1184
Number of HSP's gapped (non-prelim): 6
length of query: 502
length of database: 14,973,337
effective HSP length: 103
effective length of query: 399
effective length of database: 8,527,803
effective search space: 3402593397
effective search space used: 3402593397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)