Query 010724
Match_columns 502
No_of_seqs 134 out of 486
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 03:50:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010724.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010724hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4160 BPI/LBP/CETP family pr 100.0 9.7E-64 2.1E-68 527.5 52.4 452 28-489 23-487 (492)
2 PF02886 LBP_BPI_CETP_C: LBP / 100.0 9.8E-47 2.1E-51 365.9 23.7 233 249-484 1-238 (238)
3 cd00025 BPI1 BPI/LBP/CETP N-te 100.0 3.9E-44 8.4E-49 343.1 28.6 220 34-260 1-223 (223)
4 smart00328 BPI1 BPI/LBP/CETP N 100.0 3.7E-44 8.1E-49 344.0 26.1 221 38-264 1-225 (225)
5 smart00329 BPI2 BPI/LBP/CETP C 100.0 7.3E-42 1.6E-46 322.4 27.2 197 284-480 1-202 (202)
6 cd00026 BPI2 BPI/LBP/CETP C-te 100.0 1.5E-41 3.3E-46 319.6 26.2 197 287-483 1-200 (200)
7 PF01273 LBP_BPI_CETP: LBP / B 100.0 6.9E-27 1.5E-31 213.8 23.0 161 43-216 1-163 (164)
8 cd00264 BPI BPI/LBP/CETP domai 99.9 1.6E-21 3.4E-26 185.3 23.6 201 34-258 1-208 (208)
9 cd00264 BPI BPI/LBP/CETP domai 99.8 4E-20 8.8E-25 175.6 18.9 194 287-483 1-208 (208)
10 PF06585 JHBP: Haemolymph juve 98.4 4.9E-05 1.1E-09 74.1 20.8 182 43-227 42-245 (248)
11 smart00700 JHBP Juvenile hormo 98.1 0.00054 1.2E-08 65.8 20.6 184 41-227 16-220 (225)
12 PF14613 DUF4449: Protein of u 91.0 0.75 1.6E-05 41.6 6.7 55 170-224 2-57 (164)
13 PF10296 DUF2404: Putative int 66.3 38 0.00083 27.3 7.7 24 46-69 16-39 (91)
14 cd00025 BPI1 BPI/LBP/CETP N-te 53.8 2E+02 0.0044 27.2 11.9 53 173-226 122-186 (223)
15 TIGR02610 PHA_gran_rgn putativ 36.9 1.4E+02 0.003 24.3 6.3 30 177-206 61-90 (91)
16 smart00328 BPI1 BPI/LBP/CETP N 36.0 3.8E+02 0.0083 25.3 11.3 44 186-229 142-186 (225)
17 PRK02515 psbU photosystem II c 29.0 36 0.00079 29.5 1.8 49 1-49 1-65 (132)
18 PF09650 PHA_gran_rgn: Putativ 28.7 1E+02 0.0022 24.7 4.2 25 181-205 62-86 (87)
19 PF13209 DUF4017: Protein of u 26.5 70 0.0015 23.1 2.5 44 5-51 2-45 (60)
20 PF07172 GRP: Glycine rich pro 26.5 28 0.0006 28.5 0.6 21 5-25 3-24 (95)
21 PF05972 APC_15aa: APC 15 resi 21.7 44 0.00095 17.9 0.6 11 492-502 3-13 (16)
No 1
>KOG4160 consensus BPI/LBP/CETP family protein [Defense mechanisms]
Probab=100.00 E-value=9.7e-64 Score=527.50 Aligned_cols=452 Identities=29% Similarity=0.451 Sum_probs=411.6
Q ss_pred ccCCCceEEEEechhHHHHHHHHHHHHHHhhcCCccCCCccceeEeeeeeeEEEEEEeEEEEEEEeCCceeEe-CCceEE
Q 010724 28 ASNQESFTSIIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNITIYNIDVLSSYVKP-GDTGVV 106 (502)
Q Consensus 28 ~~~~~PGi~~rit~~gl~y~~~~~~~~l~~~l~~i~iPdi~~~~~~~~~G~~~~~is~i~I~~~~~p~~sv~l-p~~gi~ 106 (502)
+.+.+||+++|++++|++|+++.+...+++++.++++||+.++++.+++|++.|.++++++.++..+.+.+++ ++.++.
T Consensus 23 ~~~~~pg~~vri~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~g~~~~~~~~i~i~~~~~~s~~~~~~~~~~~~ 102 (492)
T KOG4160|consen 23 AEAHNPGIVVRINQKALDYVSDEGALVLQAELLRLTIPDIEGSMKSSHIGGGRYTLSSIKILRFSVPSSQLSLVPQAGLS 102 (492)
T ss_pred hcccCCceEEEechhhHHHHhHHHHHHHHHhhccCCchhhhcccccceecceEEEecceeEEeccccccceeecCCceEE
Confidence 3444577999999999999999999999999999999999999999988999999999999999999999999 878999
Q ss_pred EEEecceEEEEEEEEEEEeecccceEeeeeEEEEEEEeeEEEEEEEEEe-e-CCCceEEEEEeeeeEeccEEEEEeCcch
Q 010724 107 FVAYGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLE-T-QKGTLKLSLVDCGCYVKDISIKLDGGAS 184 (502)
Q Consensus 107 l~i~~~~i~l~g~~~~~~~~~~~pi~i~~~G~~~~~v~~~~i~~~~~l~-~-~~G~p~v~~~~C~~~i~~v~i~~~g~~s 184 (502)
|+++++++.+.++|.+ .. |+ ...+|++++.++|+++.+.+.+. + .+|+|.++...|++.++++++.+++-.+
T Consensus 103 ~~~~n~~~~~~~~~~~-~~-~~----~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~C~~~~~~l~~~~~~~~~ 176 (492)
T KOG4160|consen 103 WSITNANISLSGRWKA-RT-RF----LALGGQVDASVKGMDIQINLSLGSDIGDGKPAVSDSSCSAAISDLHVQMGSLAS 176 (492)
T ss_pred EEEeeEEEEEeeeeEe-EE-EE----EecCCeeEEEeecceEEEeeeeeccCCCCcceeeeecceeEeeeeEeecCCCcH
Confidence 9999999999999999 43 34 23459999999999999999996 5 7899999999999999999998885589
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccCCcccccccceeeeeeeecCCeeecceeEEeEeEEEEe-c
Q 010724 185 WLYQGMINAFEEQIVSAVENAITKKLKEGI-SKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTA-R 262 (502)
Q Consensus 185 ~l~n~f~~~~~~~I~~~l~~~ic~~i~~~i-~~ln~~L~~lp~~~~i~~~~~idysL~~~P~it~~~i~~~l~G~~~~-~ 262 (502)
|+++.|.+.+.+.||..++.++|+.+.+.+ .++|.+++++|+..++|+.+.+||+++++|.+|+++++++++|++++ .
T Consensus 177 ~l~~~~~~~~~~~i~~~~~~~~c~~~~~~~~~~~~~~l~~~~~~~~~d~~~~Idysl~~~P~~t~~~i~l~~~G~i~~~~ 256 (492)
T KOG4160|consen 177 WLIQLFLNAISDNIRSVLESQICKKIRASVNGDLNSFLQTLPVSISVDSNAGIDYSLLGPPAITSSYIELDLKGEIFYSL 256 (492)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcHHHHhhhchhhhhhhccCCcceecccccceeeEeccCCceecceEEEeeeeeEEecc
Confidence 999999999999999999999999999999 58999999999999999999999999999999999999999999999 5
Q ss_pred cCCCCCCCCCCCCCCCc-CCCCCCCeeEEEechhHHHHHHHHHHhcCceEEEe--ccCCCCc--cccch--hHhhhcHHH
Q 010724 263 KKASIPNYYNSNLQPPV-FCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTV--DKVPDQS--LLNTA--GWRFIIPQL 335 (502)
Q Consensus 263 ~~~~~~p~~~~~~p~~~-~~~~~~~Mv~i~lSey~~NS~l~~~~~~g~L~~~i--~~iP~~~--~LnTs--~~~~liP~l 335 (502)
++...+ + ..|... .++.+++|+++++|||++||++++||++|.|++++ ++.|.++ .++|+ |+|+++|+|
T Consensus 257 ~~~~~~-~---~~p~~~~~~~~~~~Mi~i~vSe~v~nSl~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~c~g~~lp~l 332 (492)
T KOG4160|consen 257 GQVTPP-F---PLPIVSPTPLSNSRMIYIYVSEYVFNSLLLHAYQAGLLKLLIDSDKPPVDSLKLLTTSGFCIGDLLPEL 332 (492)
T ss_pred CCCCCc-c---cCCcccccCCCCCceEEEEEhhhhhhHHHHHHHHhCceeEEEcCcCCCcccccccccceeechhhhHHH
Confidence 544433 2 122222 23446899999999999999999999999999999 3445445 56777 678899999
Q ss_pred HhhCCCCceEEEEeeCCCCEEEEEeCcEEEEEEEEEEEEE-eCCCeeeeEEEEEEEEEEEEEEEEeCcEEEEEEEeceEE
Q 010724 336 YRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDV-LESGEVIPVACISLVIHGSCSVKILRNNLGGSVKLNGFT 414 (502)
Q Consensus 336 ~~~yPn~~~~l~i~~~~~P~v~i~~~~~~~~~~~~~~~~v-~~~~~~~~v~~l~~~~~~~~~~~i~~~~l~~~lsl~~~~ 414 (502)
+++|||+++++++++.+||.+.|++++..+...+.+..++ .++++..++++++++++...+++++++++.|++++++++
T Consensus 333 ~~~~Pn~~v~l~i~t~~~P~v~i~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~g~l~l~~~~ 412 (492)
T KOG4160|consen 333 AEQYPNRTVELEISTLSPPLVVISEQGVDVVLAGSVDVFVVPPSSTNQPLFTLTVDANVSATLSLSGNKLIGNLSLNKFK 412 (492)
T ss_pred HHHCCCCeeEEEEEeCCCcEEEEecCCeEEEEecceEEEEecCCcccceeEEEEEEEEEEEEEEEeeeeEEEEEEEeeeE
Confidence 9999999999999999999999999999999999998875 566688899999999999999999999999999999999
Q ss_pred EEEeeeccCccchhchHHHHHHHHHHhhHHHHhhhccCcccCCCCCCeeEeeeEEEEECCEEEEEEeeeecCccC
Q 010724 415 MSLTWSKIGKLRLYLIQPVVWAVIQTVFVPYVNSHLGQGFPLPIIHGFTVKSAEIICSSSKITVCSDVAYADSHN 489 (502)
Q Consensus 415 l~l~~S~iG~~~~~~L~~~l~~~~~~~~~p~lN~~L~~G~pLP~~~~~~l~n~~l~~~~~~l~i~~D~~~~~~~~ 489 (502)
++.++|++|.++.+.++.+++.+.+.++.|.+|++|++|||+|.+.++.+.|+++.+++|++.+++||.|.+...
T Consensus 413 ~~~~~s~~~~i~~~~l~~~~~~~~~~~l~p~~n~~L~~G~~lp~~~~~~~~~~~i~~~~~~L~l~~D~~~~~~~~ 487 (492)
T KOG4160|consen 413 IEVKFSNIGGISLDSLQALLSTLSKSVLQPLVNSKLRKGFPLPIPDGFKLINPEISIVDGFLLLSADFLYKRTLL 487 (492)
T ss_pred EEEeecccCCccHHHHHHHHHHHHHHHhHHHHHHHHhcCccccccccceeecceEEEecCeEEEeccccchhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998744
No 2
>PF02886 LBP_BPI_CETP_C: LBP / BPI / CETP family, C-terminal domain; InterPro: IPR001124 This entry represents the C-terminal domain found in several lipid-binding serum glycoproteins. The N- and C-terminal domains share a similar two-layer alpha/beta structure, but they show little sequence identity. Proteins containing this C-terminal domain include: Bactericidal permeability-increasing protein (BPI) Lipopolysaccharide-binding protein (LBP) Cholesteryl ester transfer protein (CETP) Phospholipid transfer protein (PLTP) Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) Bactericidal permeability-increasing protein (BPI) is a potent antimicrobial protein of 456 residues that binds to and neutralises lipopolysaccharides from the outer membrane of Gram-negative bacteria []. BPI contains two domains that adopt the same structural fold, even though they have little sequence similarity []. Lipopolysaccharide-binding protein (LBP) is an endotoxin-binding protein that is closely related to, and functions in a co-ordinated manner with BPI to facilitate an integrated host response to invading Gram-negative bacteria []. Cholesteryl ester transfer protein (CETP) is a glycoprotein that facilitates the transfer of lipids (cholesteryl esters and triglycerides) between the different lipoproteins that transport them through plasma, including HDL, LDL, VLDL and chylomicrons. These lipoproteins shield the lipids from water by encapsulating them within a coating of polar lipids and proteins []. Phospholipid transfer protein (PLTP) exchanges phospholipids between lipoproteins and remodels high-density lipoproteins (HDLs) []. Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) is a potential host defensive protein that is secreted from the submucosal gland to the saliva and nasal lavage fluid. PLUNC aapears to be a secreted product of neutrophil granules that participates in an aspect of the inflammatory response that contributes to host defence []. Short palate, lung and nasal epithelium clone 1 (SPLUNC1) may bind the lipopolysaccharide of Gram-negative nanobacteria, thereby playing an important role in the host defence of nasopharyngeal epithelium [].; GO: 0008289 lipid binding; PDB: 2OBD_A 1EWF_A 1BP1_A.
Probab=100.00 E-value=9.8e-47 Score=365.87 Aligned_cols=233 Identities=27% Similarity=0.457 Sum_probs=204.5
Q ss_pred ceeEEeEeEEEEeccCCCCCCCCCCCCCCCcCCCCCCCeeEEEechhHHHHHHHHHHhcCceEEEe--ccCCCCc--ccc
Q 010724 249 SSIEFDINGLFTARKKASIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTV--DKVPDQS--LLN 324 (502)
Q Consensus 249 ~~i~~~l~G~~~~~~~~~~~p~~~~~~p~~~~~~~~~~Mv~i~lSey~~NS~l~~~~~~g~L~~~i--~~iP~~~--~Ln 324 (502)
+|||+++||||++.+++.++|+ .+|....++++++|+++|+|||++||++|+||++|.|+++| +++|+.+ .+|
T Consensus 1 ~~~e~~~kGe~~~~~~~~~~~~---~~~~~~~~~~~~~Ml~~~iSey~~NS~~~~~~~~g~l~~~it~~~~p~~~~~~l~ 77 (238)
T PF02886_consen 1 NYLETDHKGEFFPLNHHSPPPF---PPPVLPLPNSSSRMLYFWISEYVFNSLLYAAYQAGALDFTITPDMLPKSSPLLLT 77 (238)
T ss_dssp SEEEEEE--EEEETTSB---SS-----EE-GGGS-SSSSEEEEEEHHHHHHHHHHHHHTT-SEEEEEHHHCHCCHCHTTB
T ss_pred CccccccceeEEcCCCCCCCCC---CCCCcCCCCCCCcEEEEEEcHHHHHHHHHHHHHCCceEEEEecCccccccccccc
Confidence 5899999999999998877653 11222223577899999999999999999999999999999 6899864 789
Q ss_pred chhHhhhcHHHHhhCCCCceEEEEeeCCCCEEEEEeCcEEEEEEEEEEEEE-eCCCeeeeEEEEEEEEEEEEEEEEeCcE
Q 010724 325 TAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDV-LESGEVIPVACISLVIHGSCSVKILRNN 403 (502)
Q Consensus 325 Ts~~~~liP~l~~~yPn~~~~l~i~~~~~P~v~i~~~~~~~~~~~~~~~~v-~~~~~~~~v~~l~~~~~~~~~~~i~~~~ 403 (502)
|.|+|.++|||+++|||+++++++++.++|.++++++++.+++.+++++++ .++++..+++++++++++++++++++++
T Consensus 78 T~~~g~~iP~l~~~yPn~~~~l~i~~~~~P~v~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~i~~~~ 157 (238)
T PF02886_consen 78 TSCIGDLIPELAKKYPNSPVELKIRSTKPPVVTISPGGVTVSLSGSVEVFVVPPNSSKVPLFSLNVDTSADVQLSISNNK 157 (238)
T ss_dssp HCCCCTCCCCHHHCSCC-CEEEEEEESS--EEEEETTEEEEEEEEEEEEEEE-TTCGCEEEEEEEEEEEEEEEEEEETTE
T ss_pred cccHHhhhhhHHhcCCCCeEEEEEEeCCCCEEEEEcCcEEEEEEEEEEEEEecCCCceEEEEEEEEEEEEEEEEEEeCCE
Confidence 999999999999999999999999999999999999999999999999987 4567889999999999999999999999
Q ss_pred EEEEEEeceEEEEEeeeccCccchhchHHHHHHHHHHhhHHHHhhhccCcccCCCCCCeeEeeeEEEEECCEEEEEEeee
Q 010724 404 LGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQTVFVPYVNSHLGQGFPLPIIHGFTVKSAEIICSSSKITVCSDVA 483 (502)
Q Consensus 404 l~~~lsl~~~~l~l~~S~iG~~~~~~L~~~l~~~~~~~~~p~lN~~L~~G~pLP~~~~~~l~n~~l~~~~~~l~i~~D~~ 483 (502)
|+|++++.++++++.+|.||.++++.|+.+++.+++.+++|.+|++|++|||||.++++++.|+++.+++||+.+++|++
T Consensus 158 l~~~~~l~~~~~~~~~S~ig~~~~~~l~~~l~~~~~~~~~p~lN~~L~~G~pLP~~~~~~l~n~~i~~~~~~l~i~~D~~ 237 (238)
T PF02886_consen 158 LTGSLSLDKFDLSLVSSSIGPFDVSSLEFLLNSILKEVLLPKLNKKLANGFPLPIPKGINLSNPQISIHDGYLLISTDFQ 237 (238)
T ss_dssp EEEEEEEEEEEEEEEEECTSS--GHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHTTCCCCEEEEEEETTEEEEEEEEE
T ss_pred EEEEEecccEEEEEecCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcccEecccCCCeEEecCEEEEECCEEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred e
Q 010724 484 Y 484 (502)
Q Consensus 484 ~ 484 (502)
|
T Consensus 238 ~ 238 (238)
T PF02886_consen 238 Y 238 (238)
T ss_dssp E
T ss_pred C
Confidence 7
No 3
>cd00025 BPI1 BPI/LBP/CETP N-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria.; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide.
Probab=100.00 E-value=3.9e-44 Score=343.08 Aligned_cols=220 Identities=32% Similarity=0.488 Sum_probs=212.3
Q ss_pred eEEEEechhHHHHHHHHHHHHHHhhcCCccCCCccceeEeeeeeeEEEEEEeEEEEEEEeCCceeEe-CCceEEEEEecc
Q 010724 34 FTSIIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNITIYNIDVLSSYVKP-GDTGVVFVAYGT 112 (502)
Q Consensus 34 Gi~~rit~~gl~y~~~~~~~~l~~~l~~i~iPdi~~~~~~~~~G~~~~~is~i~I~~~~~p~~sv~l-p~~gi~l~i~~~ 112 (502)
|+++|||++||+|+++++++.+++++.++++||+++..++|++|+++|+++|++|+++++|++++++ |++|+.+.++++
T Consensus 1 Gi~~rlt~~gL~y~~~~~~~~~~~~l~~i~iPdi~~~~~~~~iG~v~~~~s~i~I~~~~lp~s~l~~~~~~gi~~~~s~~ 80 (223)
T cd00025 1 GAVARLSPKGLKFAKQQGLKVLQAELEKLQIPDILGAMKIKLLGKGRVGLSNKEIQELKLPSSSIKLVEVKGLDLSISNV 80 (223)
T ss_pred CeEEEEcHHHHHHHHHHHHHHHHHHhhcCCCCCccCccccccccEEEEEEEeEEEEEEecCCCceEEcCCCceEEEEeCC
Confidence 7899999999999999999999999999999999999999989999999999999999999999999 999999999999
Q ss_pred eEEEEEEEEEEEeecccceEeeeeEEEEEEEeeEEEEEEEEEe-eCCCceEEEEEeeeeEeccEEEEEeCcchhhHHHHH
Q 010724 113 TCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLE-TQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMI 191 (502)
Q Consensus 113 ~i~l~g~~~~~~~~~~~pi~i~~~G~~~~~v~~~~i~~~~~l~-~~~G~p~v~~~~C~~~i~~v~i~~~g~~s~l~n~f~ 191 (502)
++.++++|+|++. + ++++|++++.++|+++++++.++ +++|+|+++..+|++++++++++++||++|+||.|.
T Consensus 81 si~l~~~w~~~~~--~----i~~~G~~~l~v~gv~i~~~l~l~~d~~G~p~v~~~~C~~~v~~~~i~l~gg~~~l~~~f~ 154 (223)
T cd00025 81 SIGLSGVWKYNYR--F----ILDGGNVELSVEGMNIQADLRLGRDPSGRPKLSLSDCSSTVGSLRVHLGGSLGWLAKLFM 154 (223)
T ss_pred eEEEEEEEEEeeE--E----EEecEEEEEEEeEEEEEEEEEEeeCCCCCeEEEeCCCCcccCcEEEEEeCChHHHHHHHH
Confidence 9999999999985 3 58999999999999999999997 667999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccCCcccccccceeeeeeeecCCeeecceeEEeEeEEEE
Q 010724 192 NAFEEQIVSAVENAITKKLKEGIS-KLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFT 260 (502)
Q Consensus 192 ~~~~~~I~~~l~~~ic~~i~~~i~-~ln~~L~~lp~~~~i~~~~~idysL~~~P~it~~~i~~~l~G~~~ 260 (502)
+.+++.++..+++++|+.+..+++ .+|..|+ +|+..|+|+.+.+||+|+++|.+|++|+++++||+||
T Consensus 155 ~~i~~~l~~~l~~~iCp~i~~~i~~~~~~~l~-lp~~~~vd~~~~idysl~~~P~~t~~~l~~~~kg~f~ 223 (223)
T cd00025 155 NFIESLLKKVLKGQLCPVIDASLVSMLESLLQ-LPKLPPVDSNAGVDYSLTSPPVLTASYLDSDIKGTFQ 223 (223)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhhcC-CceEeccCCcEEEEEEeecCCccccceeeeeeeEEEC
Confidence 999999999999999999999995 6788888 9999999999999999999999999999999999996
No 4
>smart00328 BPI1 BPI/LBP/CETP N-terminal domain. Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain
Probab=100.00 E-value=3.7e-44 Score=344.00 Aligned_cols=221 Identities=20% Similarity=0.370 Sum_probs=213.7
Q ss_pred EechhHHHHHHHHHHHHHHhhcCCccCCCccceeEeeeeeeEEEEEEeEEEEEEEeCCceeEe-CCceEEEEEecceEEE
Q 010724 38 IISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNITIYNIDVLSSYVKP-GDTGVVFVAYGTTCNL 116 (502)
Q Consensus 38 rit~~gl~y~~~~~~~~l~~~l~~i~iPdi~~~~~~~~~G~~~~~is~i~I~~~~~p~~sv~l-p~~gi~l~i~~~~i~l 116 (502)
|||++||+|+++++..++++++.++++||+++++++|++|+++|.+++|+|+++++|++++++ |+.|++|.++++++.+
T Consensus 1 rit~~gL~y~~~~~~~~l~~~l~~i~iPdi~~~~~~~~~G~v~~~~~~i~I~~~~~~~s~~~~~p~~Gi~l~is~~si~~ 80 (225)
T smart00328 1 RITQKGLDYAAQEGALALQKELPKITIPDIRGDFAIKLLGIGHYSIYSLSISRLELPSSQLRFQPSKGLRLSISNLSLRV 80 (225)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhcCCCCCCcCceecccccEEEEEEEEEEEEeccCCCCccccCCCCceEEEEcCceEEE
Confidence 799999999999999999999999999999999999988999999999999999999999999 9999999999999999
Q ss_pred EEEEEEEEeecccceEeeeeEEEEEEEeeEEEEEEEEEe-eCCCceEEEEEeeeeEeccEEEEEeCc-chhhHHHHHHHH
Q 010724 117 SANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLE-TQKGTLKLSLVDCGCYVKDISIKLDGG-ASWLYQGMINAF 194 (502)
Q Consensus 117 ~g~~~~~~~~~~~pi~i~~~G~~~~~v~~~~i~~~~~l~-~~~G~p~v~~~~C~~~i~~v~i~~~g~-~s~l~n~f~~~~ 194 (502)
+|+|+|++. + ++++|.+++.++++++++.+.+. +.+|+|++++.+|++++++++++++|+ .+|+||.|.+.+
T Consensus 81 ~~~~~~~~~--~----i~~~G~~~~~v~~~~i~~~l~l~~~~~G~p~v~~~~C~~~i~~v~l~~~G~~~swl~n~f~~~i 154 (225)
T smart00328 81 SGDLKGSLN--F----IKLEGNFQLSVEGLSISADLRIESNPTGRPTVTLSSCSSSIGDVRLHFSGSVLGWLINLFRKFI 154 (225)
T ss_pred EEEEEEEEE--E----EEeeeEEEEEEeeEEEEEEEEeccCCCCCeeEEeCCcccCcceEEEEEECCchHHHHHHHHHHH
Confidence 999999974 4 68999999999999999999996 889999999999999999999999996 899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhhccCCcccccccceeeeeeeecCCeeecceeEEeEeEEEEeccC
Q 010724 195 EEQIVSAVENAITKKLKEGI-SKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKK 264 (502)
Q Consensus 195 ~~~I~~~l~~~ic~~i~~~i-~~ln~~L~~lp~~~~i~~~~~idysL~~~P~it~~~i~~~l~G~~~~~~~ 264 (502)
++.||..++++||++|.+++ +++|+.|+++|+.+++|+...+||+|+++|.+|+++++++++|+|++.++
T Consensus 155 ~~~i~~~l~~~IC~~i~~~i~~~l~~~L~~lp~~~~vd~~~~idysl~~~p~~t~~~l~~~~kg~f~~~~~ 225 (225)
T smart00328 155 ENTLRNVLEGQICPVIDSAVSNKMNDYLQTLPLSISLDSLIGVDYSLVSPPRVTAEFLDVRLKGKFFWKNH 225 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeeecceeEEeeecccCCcccccccccccceeEEeCCC
Confidence 99999999999999999998 68999999999999999999999999999999999999999999999763
No 5
>smart00329 BPI2 BPI/LBP/CETP C-terminal domain. Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain
Probab=100.00 E-value=7.3e-42 Score=322.42 Aligned_cols=197 Identities=22% Similarity=0.401 Sum_probs=189.9
Q ss_pred CCCeeEEEechhHHHHHHHHHHhcCceEEEe--ccCCCC--ccccchhHhhhcHHHHhhCCCCceEEEEeeCCCCEEEEE
Q 010724 284 QSKMLGISLDEAVLNSASALYYDAEFMQWTV--DKVPDQ--SLLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVA 359 (502)
Q Consensus 284 ~~~Mv~i~lSey~~NS~l~~~~~~g~L~~~i--~~iP~~--~~LnTs~~~~liP~l~~~yPn~~~~l~i~~~~~P~v~i~ 359 (502)
+++|+|+++|||++||++|+||++|.|+++| +++|+. .+|||+|+|.++|||+++|||++|++++++.++|.++++
T Consensus 1 ~~~Mv~i~lSey~~NS~~~~~~~ag~l~~~it~~~ip~~~~~~lnT~~~~~~iP~l~~~yPn~~~~L~i~~~~~P~v~i~ 80 (202)
T smart00329 1 SDRMVYLALSEYFFNSLLFVYQQAGALKLTITDDMLPKESKFLLTTCCFGTLVPEVAEQYPDSTLQLEISVLSPPRVTLQ 80 (202)
T ss_pred CCeEEEEEecHHHHhHHHHHHHHCCcceEEeccccCCCcCccccchhHHHHHHHHHHHHCCCCcEEEEEEeCCCCEEEEe
Confidence 4799999999999999999999999999999 789987 499999999999999999999999999999999999999
Q ss_pred eCcEEEEEEEEEEEEEe-CCCeeeeEEEEEEEEEEEEEEEEeCcEEEEEEEeceEEEEEeeeccCccchhchHHHHHHHH
Q 010724 360 EDNIDATVHADLIIDVL-ESGEVIPVACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVI 438 (502)
Q Consensus 360 ~~~~~~~~~~~~~~~v~-~~~~~~~v~~l~~~~~~~~~~~i~~~~l~~~lsl~~~~l~l~~S~iG~~~~~~L~~~l~~~~ 438 (502)
++++++.+.+.+++++. ++++..++|++++++++++++++++++|.|+++++++++++++|+||+++++.|+.+++.++
T Consensus 81 ~~~~~v~~~~~v~~~v~~~~~~~~~lf~l~~~~~~~~~~~~~~~~l~g~l~l~~~~l~l~~S~ig~~~~~~L~~~l~~~~ 160 (202)
T smart00329 81 PGGATVYIHASVKVFAILPDSSRASLFLMSVDTNVSAKSSFKTKKLLGELKLDKLQVELKHSNVGGFDAELLEDLLNYLV 160 (202)
T ss_pred cCCEEEEEeEEEEEEEeCCCCCcceEEEEEEEEEEEEEEEEeCCEEEEEEEeccEEEEeeecccCCcCHHHHHHHHHHHH
Confidence 99999999999999875 56678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHhhhccCcccCCCCCCeeEeeeEEEEECCEEEEEE
Q 010724 439 QTVFVPYVNSHLGQGFPLPIIHGFTVKSAEIICSSSKITVCS 480 (502)
Q Consensus 439 ~~~~~p~lN~~L~~G~pLP~~~~~~l~n~~l~~~~~~l~i~~ 480 (502)
+.+++|.+|++|++|||||.+.++++.|+++.++|||+.+++
T Consensus 161 ~~~~~P~vN~~L~~G~pLP~~~~~~l~n~~i~~~~~~l~i~~ 202 (202)
T smart00329 161 PAVLLPKVNEKLRRGVPLPLPCGVQLINPVLQVHDDFLLLGA 202 (202)
T ss_pred HHhhHHHHHHHHcCCcCCCCCCceEEEcCEEEEEcCEEEEeC
Confidence 999999999999999999999999999999999999999985
No 6
>cd00026 BPI2 BPI/LBP/CETP C-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria.; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide.
Probab=100.00 E-value=1.5e-41 Score=319.60 Aligned_cols=197 Identities=30% Similarity=0.486 Sum_probs=190.1
Q ss_pred eeEEEechhHHHHHHHHHHhcCceEEEe--ccCCCCccccchhHhhhcHHHHhhCCCCceEEEEeeCCCCEEEEEeCcEE
Q 010724 287 MLGISLDEAVLNSASALYYDAEFMQWTV--DKVPDQSLLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNID 364 (502)
Q Consensus 287 Mv~i~lSey~~NS~l~~~~~~g~L~~~i--~~iP~~~~LnTs~~~~liP~l~~~yPn~~~~l~i~~~~~P~v~i~~~~~~ 364 (502)
|+|+++|||++||++++||++|.|++++ +++|...+|||+++|.++||++++|||+++++++++.+||.+++++++++
T Consensus 1 M~~~~~se~~~nSa~~~~~~ag~l~~~it~~~~p~~~~LnT~~~~~~iP~l~~~yPn~~~~L~i~~~~~P~v~i~~~~~~ 80 (200)
T cd00026 1 MVYLAVSEHVFNSAALVYFQAGALNLLLTDDMPPSKSRLTTSIFGIFIPELAKKYPNMPQQLKISVSSPPHLVLSEGGAT 80 (200)
T ss_pred CEEEEEeHHHHhHHHHHHhhCCeEEEEEeCCcCCcccccchhHHHHHHHHHHHHCCCCcEEEEEEeCCCCEEEEecCCEE
Confidence 8999999999999999999999999999 57886679999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEEEEe-CCCeeeeEEEEEEEEEEEEEEEEeCcEEEEEEEeceEEEEEeeeccCccchhchHHHHHHHHHHhhH
Q 010724 365 ATVHADLIIDVL-ESGEVIPVACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQTVFV 443 (502)
Q Consensus 365 ~~~~~~~~~~v~-~~~~~~~v~~l~~~~~~~~~~~i~~~~l~~~lsl~~~~l~l~~S~iG~~~~~~L~~~l~~~~~~~~~ 443 (502)
+++.+++++++. ++++..++|+++++++++++++++++||.|+++++++++++++|++|.++++.|+.+++.+++..++
T Consensus 81 v~~~~~v~~~v~~~~~~~~~lf~l~~~~~~~~~~~~~~~kL~g~l~l~~~~~~l~~S~ig~~~~~~L~~~l~~vl~~~vl 160 (200)
T cd00026 81 LAQQLDVEIFATLPDSQLRPLFRLGVDTSSSAQLSVSKKKLIGSLNLDRFLLELKSSNIGSFIPELLQAILTTILEITVL 160 (200)
T ss_pred EEEEEEEEEEEeCCCCccceEEEEEEEEEEEEEEEEeCCEEEEEEEeccEEEEEcccccCCcCHHHHHHHHHHHHHhccc
Confidence 999999999875 5556689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCcccCCCCCCeeEeeeEEEEECCEEEEEEeee
Q 010724 444 PYVNSHLGQGFPLPIIHGFTVKSAEIICSSSKITVCSDVA 483 (502)
Q Consensus 444 p~lN~~L~~G~pLP~~~~~~l~n~~l~~~~~~l~i~~D~~ 483 (502)
|.+|++|++|||||.++++++.|+++.++|||+.+++|++
T Consensus 161 p~~N~~L~~G~pLP~~~~~~l~n~~i~~~~~~l~i~~d~~ 200 (200)
T cd00026 161 PNVNDKLRRGFPLPLPKNFTLYDAEIQVHKDFLLLGADVQ 200 (200)
T ss_pred HHHHHHhcCCcCCCCCCcceEEccEEEEECCEEEEecCCC
Confidence 9999999999999999999999999999999999999984
No 7
>PF01273 LBP_BPI_CETP: LBP / BPI / CETP family, N-terminal domain; InterPro: IPR017942 This entry represents the N-terminal domain found in several lipid-binding serum glycoproteins. The N- and C-terminal domains share a similar two-layer alpha/beta structure, but they show little sequence identity. Proteins containing this N-terminal domain include: Bactericidal permeability-increasing protein (BPI) Lipopolysaccharide-binding protein (LBP) Cholesteryl ester transfer protein (CETP) Phospholipid transfer protein (PLTP) Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) Bactericidal permeability-increasing protein (BPI) is a potent antimicrobial protein of 456 residues that binds to and neutralises lipopolysaccharides from the outer membrane of Gram-negative bacteria []. BPI contains two domains that adopt the same structural fold, even though they have little sequence similarity []. Lipopolysaccharide-binding protein (LBP) is an endotoxin-binding protein that is closely related to, and functions in a co-ordinated manner with BPI to facilitate an integrated host response to invading Gram-negative bacteria []. Cholesteryl ester transfer protein (CETP) is a glycoprotein that facilitates the transfer of lipids (cholesteryl esters and triglycerides) between the different lipoproteins that transport them through plasma, including HDL, LDL, VLDL and chylomicrons. These lipoproteins shield the lipids from water by encapsulating them within a coating of polar lipids and proteins []. Phospholipid transfer protein (PLTP) exchanges phospholipids between lipoproteins and remodels high-density lipoproteins (HDLs) []. Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) is a potential host defensive protein that is secreted from the submucosal gland to the saliva and nasal lavage fluid. PLUNC appears to be a secreted product of neutrophil granules that participates in an aspect of the inflammatory response that contributes to host defence []. Short palate, lung and nasal epithelium clone 1 (SPLUNC1) may bind the lipopolysaccharide of Gram-negative nanobacteria, thereby playing an important role in the host defence of nasopharyngeal epithelium [].; GO: 0008289 lipid binding; PDB: 1EWF_A 1BP1_A 2OBD_A.
Probab=99.95 E-value=6.9e-27 Score=213.77 Aligned_cols=161 Identities=28% Similarity=0.495 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHHHHhhcCCccCCCccceeEeeeeeeEEEEEEeEEEEEEEeCCceeEe-CCceEEEEEecceEEEEEEEE
Q 010724 43 GLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNITIYNIDVLSSYVKP-GDTGVVFVAYGTTCNLSANWF 121 (502)
Q Consensus 43 gl~y~~~~~~~~l~~~l~~i~iPdi~~~~~~~~~G~~~~~is~i~I~~~~~p~~sv~l-p~~gi~l~i~~~~i~l~g~~~ 121 (502)
||+|+++++.+++++++.+++|||++++++.++.|++.|+++++||+++++|+.++++ |+.|+.+...++++.++++|.
T Consensus 1 gL~y~~~~~~~~l~~~l~~~~ipdi~~~~~~~~~g~~~~~i~~i~I~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 80 (164)
T PF01273_consen 1 GLDYANQVGIQILQKELQKIQIPDISGSFSSPFIGSVKYNISNIKISNFRLPQSSLELSPDGGIVLSIIPASASLSGNWP 80 (164)
T ss_dssp HHHHHHHHHHHHHHHHHCC-----EEEEECETTTCCEEEEEEEEEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEEEE
T ss_pred ChHHHHHHHHHHHHHHhhcCCCCCcccccccccccceEEEEEeEEEEEeecCCccceECCCCceEEEEeeeEEEEEEEEe
Confidence 8999999999999999999999999999988878999999999999999999999999 999999999999999999999
Q ss_pred EEEeecccceEeeeeEEEEEEEeeEEEEEEEEEe-eCCCceEEEEEeeeeEeccEEEEEeCcchhhHHHHHHHHHHHHHH
Q 010724 122 YEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLE-TQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVS 200 (502)
Q Consensus 122 ~~~~~~~~pi~i~~~G~~~~~v~~~~i~~~~~l~-~~~G~p~v~~~~C~~~i~~v~i~~~g~~s~l~n~f~~~~~~~I~~ 200 (502)
++. +++ .. ..++++++.++++ +++|+|++++.+|++++++++++++|+.+|+||.|.+.+++.|++
T Consensus 81 ~~~--~~i----~~-------~~~v~i~~~i~l~~~~~G~~~v~~~~C~~~i~~v~i~~~gg~~~l~~~~~~~l~~~i~~ 147 (164)
T PF01273_consen 81 YKG--GFI----KI-------AVGVDISVTIRLERDESGRPTVVVGSCSSDIGSVDIKLHGGASWLYNLFINFLSKSIRS 147 (164)
T ss_dssp EEE--CCE----EE-------EEEEEEEEEEEEEEECCTEEEEEEEEEEEEEEEEEEEETTCGCCHHHHHHHHTHHHHHH
T ss_pred cCC--Chh----hh-------eeeEEEEEEEEEEEcCCCCeEEEECCCccCcceEEEEECCCcHHHHHHHHHHHHHHHHH
Confidence 985 352 22 5578899999997 778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 010724 201 AVENAITKKLKEGISK 216 (502)
Q Consensus 201 ~l~~~ic~~i~~~i~~ 216 (502)
.+++++|+.+...++.
T Consensus 148 ~l~~~iC~~i~~~l~~ 163 (164)
T PF01273_consen 148 LLQKKICPVINSLLSN 163 (164)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhhcchHhHHhhcC
Confidence 9999999999887754
No 8
>cd00264 BPI BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria.; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide.
Probab=99.89 E-value=1.6e-21 Score=185.31 Aligned_cols=201 Identities=21% Similarity=0.323 Sum_probs=182.8
Q ss_pred eEEEEechhHHHHHHHHHHHHHHhhcCCccCCCccceeEee-----eeeeEEEEEEeEEEEEEEeCCceeEe-CCceEEE
Q 010724 34 FTSIIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIP-----ILGNVRMVLSNITIYNIDVLSSYVKP-GDTGVVF 107 (502)
Q Consensus 34 Gi~~rit~~gl~y~~~~~~~~l~~~l~~i~iPdi~~~~~~~-----~~G~~~~~is~i~I~~~~~p~~sv~l-p~~gi~l 107 (502)
|+++|+++++++|+++.+.+..+. ...++.|++++..+++ ..|...|..++++++.+..+.+++++ | +|+.+
T Consensus 1 m~~~~ls~~~l~~~~~~~~~~~~~-~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~v~~~~-~g~~~ 78 (208)
T cd00264 1 MVVLRLSEDVLNSALQVYLKAGAL-LLTLTIPDIPKALKLKLSGIIPLGAKKYPDMNLQLKILSLSSPTLKLSP-KGLDL 78 (208)
T ss_pred CeEEEEeHHHHHHHHHHHHHHHHh-hcCcccCCCCCccccccccccceEEEEeeCCceEEEEEecCCCeEEEec-CCEEE
Confidence 589999999999999999999998 7789999999987764 36999999999999999999999999 7 89999
Q ss_pred EEecceEEEEEEEEEEEeecccceEeeeeEEEEEEEeeEEEEEEEEEeeCCCceEEEEEeeeeEeccEEEEEeCcchhhH
Q 010724 108 VAYGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLETQKGTLKLSLVDCGCYVKDISIKLDGGASWLY 187 (502)
Q Consensus 108 ~i~~~~i~l~g~~~~~~~~~~~pi~i~~~G~~~~~v~~~~i~~~~~l~~~~G~p~v~~~~C~~~i~~v~i~~~g~~s~l~ 187 (502)
.++ +++++.+.|.++ ++|.+++.++ +++++++++..++|++++....|+++++.++++++|
T Consensus 79 ~~~-~~i~~~~~~~~~-----------~~~~~~~~l~-v~~~~~~~l~~~~g~l~~~l~~c~~~~~~~~~~~~g------ 139 (208)
T cd00264 79 SQS-VSIELFVTWPAS-----------DGGNPLFSLE-VEISASLQLSVDPGRLTLSLSLCSSTVELLSSNIGG------ 139 (208)
T ss_pred EEE-EEEEEEEEeccC-----------CCCCEEEEEE-EEEEEEEEEEeeCCEEEEEEecCcceeeEEEEEEec------
Confidence 999 999999999763 4677888887 889989999744499999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccCCcccccccceeeeeeeecCCeeecceeEEeEeEE
Q 010724 188 QGMINAFEEQIVSAVENAITKKLKEGIS-KLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGL 258 (502)
Q Consensus 188 n~f~~~~~~~I~~~l~~~ic~~i~~~i~-~ln~~L~~lp~~~~i~~~~~idysL~~~P~it~~~i~~~l~G~ 258 (502)
|.+.+.+.+++.+++.+|+.+...++ .+++.++.+|+ +|+++...+||+++.+|.++++|++++++|+
T Consensus 140 --~~~~~~~~l~~~l~~~lc~~v~~~~n~~l~~~l~l~~~-~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~ 208 (208)
T cd00264 140 --FGNFIVSLLQKVLNTILCPVVLPALNSKLRSGLPLLPV-PPVPSPAGVDYSLTAEPVLSASFLLLDADVT 208 (208)
T ss_pred --cchhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcCCc-cCCCceeEEEEEEccCCceeccEEEEccccC
Confidence 55667889999999999999999985 78999999999 9999999999999999999999999999874
No 9
>cd00264 BPI BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria.; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide.
Probab=99.85 E-value=4e-20 Score=175.62 Aligned_cols=194 Identities=28% Similarity=0.379 Sum_probs=177.2
Q ss_pred eeEEEechhHHHHHHHHHHhcCceEEEe--ccCCCCccccchhHhhhcHHHHhhCCCCceEEEEeeCCCCEEEEEeCcEE
Q 010724 287 MLGISLDEAVLNSASALYYDAEFMQWTV--DKVPDQSLLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNID 364 (502)
Q Consensus 287 Mv~i~lSey~~NS~l~~~~~~g~L~~~i--~~iP~~~~LnTs~~~~liP~l~~~yPn~~~~l~i~~~~~P~v~i~~~~~~ 364 (502)
|+++++|||++|++.++++++|.+.+.+ .++|+...+.++ .++|+++.+||+.+++++.....+|.+.+.++++.
T Consensus 1 m~~~~ls~~~l~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~p~v~~~~~g~~ 77 (208)
T cd00264 1 MVVLRLSEDVLNSALQVYLKAGALLLTLTIPDIPKALKLKLS---GIIPLGAKKYPDMNLQLKILSLSSPTLKLSPKGLD 77 (208)
T ss_pred CeEEEEeHHHHHHHHHHHHHHHHhhcCcccCCCCCccccccc---cccceEEEEeeCCceEEEEEecCCCeEEEecCCEE
Confidence 8999999999999999999999986666 467765444444 78999999999999999999999999999999999
Q ss_pred EEEEEEEEEEEe-CCC-eeeeEEEEEEEEEEEEEEEEeCcEEEEEEEeceEEEEEeeecc---CccchhchHHHHHHHHH
Q 010724 365 ATVHADLIIDVL-ESG-EVIPVACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKI---GKLRLYLIQPVVWAVIQ 439 (502)
Q Consensus 365 ~~~~~~~~~~v~-~~~-~~~~v~~l~~~~~~~~~~~i~~~~l~~~lsl~~~~l~l~~S~i---G~~~~~~L~~~l~~~~~ 439 (502)
+.+.+++++.+. +.+ +..+.+.+++++++++++..++++++++++..+.++...+|++ |.+....|+..++..++
T Consensus 78 ~~~~~~i~~~~~~~~~~~~~~~~~l~v~~~~~~~l~~~~g~l~~~l~~c~~~~~~~~~~~~g~~~~~~~~l~~~l~~~lc 157 (208)
T cd00264 78 LSQSVSIELFVTWPASDGGNPLFSLEVEISASLQLSVDPGRLTLSLSLCSSTVELLSSNIGGFGNFIVSLLQKVLNTILC 157 (208)
T ss_pred EEEEEEEEEEEEeccCCCCCEEEEEEEEEEEEEEEEeeCCEEEEEEecCcceeeEEEEEEeccchhHHHHHHHHHHHHHH
Confidence 999999999764 444 6678899999999999999999999999999999999999999 99999999999999999
Q ss_pred HhhHHHHhhhccCcccC------CCCCCeeEee-eEEEEECCEEEEEEeee
Q 010724 440 TVFVPYVNSHLGQGFPL------PIIHGFTVKS-AEIICSSSKITVCSDVA 483 (502)
Q Consensus 440 ~~~~p~lN~~L~~G~pL------P~~~~~~l~n-~~l~~~~~~l~i~~D~~ 483 (502)
..+.|.+|.++++|+|+ |.+.++++.+ +.+.+.++|+.+++|+.
T Consensus 158 ~~v~~~~n~~l~~~l~l~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~ 208 (208)
T cd00264 158 PVVLPALNSKLRSGLPLLPVPPVPSPAGVDYSLTAEPVLSASFLLLDADVT 208 (208)
T ss_pred HHHHHHHHHHHHccCCcCCccCCCceeEEEEEEccCCceeccEEEEccccC
Confidence 99999999999999999 9999999999 99999999999999863
No 10
>PF06585 JHBP: Haemolymph juvenile hormone binding protein (JHBP); InterPro: IPR010562 This family consists of several insect specific haemolymph juvenile hormone binding proteins (JHBP). Juvenile hormone (JH) has a profound effect on insects. It regulates embryogenesis, maintains the status quo of larva development and stimulates reproductive maturation in the adult forms. JH is transported from the sites of its synthesis to target tissues by a haemolymph carrier called juvenile hormone-binding protein (JHBP). JHBP protects the JH molecules from hydrolysis by non-specific esterases present in the insect haemolymph []. The crystal structure of the JHBP from Galleria mellonella (Wax moth) shows an unusual fold consisting of a long alpha-helix wrapped in a much curved antiparallel beta-sheet. The folding pattern for this structure closely resembles that found in some tandem-repeat mammalian lipid-binding and bactericidal permeability-increasing proteins, with a similar organisation of the major cavity and a disulphide bond linking the long helix and the beta-sheet. It would appear that JHBP forms two cavities, only one of which, the one near the N- and C-termini, binds the hormone; binding induces a conformational change, of unknown significance [, ].; PDB: 3A1Z_D 3AOS_B 3AOT_A 2RQF_A 2RCK_A 3E8W_A 3E8T_A.
Probab=98.40 E-value=4.9e-05 Score=74.09 Aligned_cols=182 Identities=19% Similarity=0.242 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHhhcCCccCCCccceeEeee----e----eeEEEEEEeEEEEEEE---eCCceeEeCCceEEEEEec
Q 010724 43 GLDFVKDLLITKAISSIIPLALPKIERAVKIPI----L----GNVRMVLSNITIYNID---VLSSYVKPGDTGVVFVAYG 111 (502)
Q Consensus 43 gl~y~~~~~~~~l~~~l~~i~iPdi~~~~~~~~----~----G~~~~~is~i~I~~~~---~p~~sv~lp~~gi~l~i~~ 111 (502)
-+....+...+.+.+-++.+.+|.+.- ..++. . .+++..++|++++.++ +.+.++.+....+.+.+.=
T Consensus 42 cl~~~~~~~~~~l~~Gip~l~ip~ldP-l~i~~~~~~~~~~~~~~~~~~~n~~i~Gls~~~v~~~~~d~~~~~~~~~~~~ 120 (248)
T PF06585_consen 42 CLRESIENFRPYLAKGIPELGIPPLDP-LYIPEIDINFNSGPINLKANFKNVKIYGLSNFEVNKVSVDLKKLKLNFDLTF 120 (248)
T ss_dssp HHHHHHHHHHHHHTCEBGGGTBEETTT-EEEEEEEEEE-TTCTTEEEEEEEEEEESGGG-EEEEEEEETTTTEEEEEEEE
T ss_pred HHHHHHHHHHHhhcCCCcccCCCCCCC-EEecceEEEeecCCceEEEEEEeEEEeccCCcEEEEEEEcCCCcEEEEEEEE
Confidence 333444445556665555555555431 11110 1 2345677888887643 2333333344566666665
Q ss_pred ceEEEEEEEEEEEeecccceEeeeeEEEEEEEeeEEEEEEEEEe--eCCC--ceEEEEEeeeeEeccEEEEEeCc-----
Q 010724 112 TTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLE--TQKG--TLKLSLVDCGCYVKDISIKLDGG----- 182 (502)
Q Consensus 112 ~~i~l~g~~~~~~~~~~~pi~i~~~G~~~~~v~~~~i~~~~~l~--~~~G--~p~v~~~~C~~~i~~v~i~~~g~----- 182 (502)
-.+.+.|+|+..-...++| +..+|.+++.+++++++..+... ..+| +++++...+..+++++++++.+-
T Consensus 121 P~l~i~g~Y~~~g~i~~~p--i~g~G~~~~~l~~~~~~~~~~~~~~~~~g~~~l~i~~~~~~~~~~~~~~~~~nl~~g~~ 198 (248)
T PF06585_consen 121 PKLSIKGKYEIDGKILLLP--ISGKGDFNITLENVRATGTIKGEVYKKNGKTYLRITNFKIDFDLGNVKFDLENLFNGNK 198 (248)
T ss_dssp -EEEEEEEEEEEEEECCEC--CCTEEEEEEEEEEEEEEEEEEEEEEEETS-EEEEEEEEEEEEEECEEEEEESHHHHHHH
T ss_pred EEEEEEEEEEEeeeeeeeE--EeccceEEEEeeeEEEEEEEEEEEeecCCccEEEEEEEEEEEEeceEEEEeeccCCCCH
Confidence 5788889988886533467 78999999999999999888884 3344 45665566666779999998742
Q ss_pred -chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccCCcc
Q 010724 183 -ASWLYQGMINAFEEQIVSAVENAITKKLKEGI-SKLDSLLQSLPKE 227 (502)
Q Consensus 183 -~s~l~n~f~~~~~~~I~~~l~~~ic~~i~~~i-~~ln~~L~~lp~~ 227 (502)
.+...|.+.+..-..+-+.++..+-+.+.+.+ ..+|+.|+.+|..
T Consensus 199 ~l~~~~n~~in~~~~~~~~~~~p~i~~~~~~~i~~~~N~~l~~~p~~ 245 (248)
T PF06585_consen 199 ELSDFINKFINENWPELLNEVKPDIEEILSKIITDIINKILSKVPYD 245 (248)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CC
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 24445544444444444555555555555555 5679999988863
No 11
>smart00700 JHBP Juvenile hormone binding protein domains in insects. The juvenile hormone exerts pleiotropic functions during insect life cycles and its binding proteins regulate these functions.
Probab=98.11 E-value=0.00054 Score=65.81 Aligned_cols=184 Identities=19% Similarity=0.291 Sum_probs=122.7
Q ss_pred hhHHHHHHHHHHHHHHhhcCCccCCCccc----eeEeeeee----eEEEEEEeEEEEEEEeCC-ceeEe--CCceEEEEE
Q 010724 41 QTGLDFVKDLLITKAISSIIPLALPKIER----AVKIPILG----NVRMVLSNITIYNIDVLS-SYVKP--GDTGVVFVA 109 (502)
Q Consensus 41 ~~gl~y~~~~~~~~l~~~l~~i~iPdi~~----~~~~~~~G----~~~~~is~i~I~~~~~p~-~sv~l--p~~gi~l~i 109 (502)
.+-+.-+.+.+.+.+.+-++.+.+|.+.- +..+. .| .++..++|+++..++--. .+++. ....+.+.+
T Consensus 16 ~~Ci~~~~~~~~~~~~~G~Pe~gip~ldPl~i~~~~i~-~~~~~~~~~~~~~n~~i~Gl~~~~i~~~~~~~~~~~~~~~~ 94 (225)
T smart00700 16 SECLRDAIEALLPQLKNGIPEYGIPPLDPLEIDDLKIS-IGSGVIGLRLTFKNVKIYGLSNFEITKFKMDLKDKKIELKI 94 (225)
T ss_pred hHHHHHHHHHHHHHHhcCCCccCCCCcCCEEeeeEEEe-cCCCceEEEEEEEEeEEEcCcceEEEEEEecCCCcEEEEEE
Confidence 34444455555566666666565665531 11111 12 356677888888764221 13333 344677777
Q ss_pred ecceEEEEEEEEEEEeecccceEeeeeEEEEEEEeeEEEEEEEEEe-eCCC--ceEEEEEeeeeEeccEEEEEeCc----
Q 010724 110 YGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLE-TQKG--TLKLSLVDCGCYVKDISIKLDGG---- 182 (502)
Q Consensus 110 ~~~~i~l~g~~~~~~~~~~~pi~i~~~G~~~~~v~~~~i~~~~~l~-~~~G--~p~v~~~~C~~~i~~v~i~~~g~---- 182 (502)
.--.+.+.|+|...-+...+| |..+|.+++.++++++.+.+... ..+| ++++....+..+++++++++.+-
T Consensus 95 ~~p~l~~~g~Y~~~g~ll~lp--i~g~G~~~~~l~n~~~~~~~~~~~~~~g~~yl~i~~~~~~~~~~~~~~~~~NLfngn 172 (225)
T smart00700 95 EFPKLNVKGDYKLDGRLLGLP--LNGKGDANFTLENVKIRGTLKLKLGPDGKTYLKIKSLKVNFEVGDVKSHLDNLFNGN 172 (225)
T ss_pred ECCcEEEEeeeEeeeEEEEEE--ecCCCcEEEEEEeeEEEEEEEEEEccCCeEEEEEEEEEEEEEeceEEEEeeccCCCC
Confidence 765688899988875433355 78899999999999988887774 3356 67788888899999999987642
Q ss_pred --chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccCCcc
Q 010724 183 --ASWLYQGMINAFEEQIVSAVENAITKKLKEGI-SKLDSLLQSLPKE 227 (502)
Q Consensus 183 --~s~l~n~f~~~~~~~I~~~l~~~ic~~i~~~i-~~ln~~L~~lp~~ 227 (502)
++...|.|.+.--..+.+.++..+.+.+...+ ..+|+.+..+|..
T Consensus 173 ~~L~~~~n~~lNen~~~i~~e~~p~i~~~~~~~~~~~~n~~~~~vp~~ 220 (225)
T smart00700 173 KDLNDAINKFLNENWKALINELLPAIVEKLESIFLDLVNKVFAKVPID 220 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Confidence 35566666666666677777777777777776 6789999998863
No 12
>PF14613 DUF4449: Protein of unknown function (DUF4449)
Probab=90.97 E-value=0.75 Score=41.59 Aligned_cols=55 Identities=18% Similarity=0.389 Sum_probs=48.1
Q ss_pred eEeccEEEEEeCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 010724 170 CYVKDISIKLDGG-ASWLYQGMINAFEEQIVSAVENAITKKLKEGISKLDSLLQSL 224 (502)
Q Consensus 170 ~~i~~v~i~~~g~-~s~l~n~f~~~~~~~I~~~l~~~ic~~i~~~i~~ln~~L~~l 224 (502)
+++.+++|++.-+ ..+||.+|+..+.+.+|..|++.|-++|+..++.++..+-.+
T Consensus 2 V~i~~L~ikikkSkHklL~~~fKPll~~~vR~alqKalE~qIr~~~~~~D~~l~~i 57 (164)
T PF14613_consen 2 VDIDNLKIKIKKSKHKLLFKLFKPLLLKVVRPALQKALEKQIRDAFEKLDRFLYDI 57 (164)
T ss_pred cccccceeEeeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4678899999966 789999999999999999999999999999998888766544
No 13
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=66.25 E-value=38 Score=27.27 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhhcCCccCCCccc
Q 010724 46 FVKDLLITKAISSIIPLALPKIER 69 (502)
Q Consensus 46 y~~~~~~~~l~~~l~~i~iPdi~~ 69 (502)
..++...+.|++++++++.|.+-+
T Consensus 16 ~~~~~i~~~L~~kL~~i~~P~fl~ 39 (91)
T PF10296_consen 16 AFRDKIKEKLQKKLNKIKLPSFLD 39 (91)
T ss_pred HHHHHHHHHHHHHHccccCCCccC
Confidence 456667889999999998888743
No 14
>cd00025 BPI1 BPI/LBP/CETP N-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria.; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide.
Probab=53.81 E-value=2e+02 Score=27.25 Aligned_cols=53 Identities=23% Similarity=0.211 Sum_probs=39.2
Q ss_pred ccEEEEEeCcc-----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccCCc
Q 010724 173 KDISIKLDGGA-----------SWLYQGMINAFEEQIVSAVENAITKKLKEGIS-KLDSLLQSLPK 226 (502)
Q Consensus 173 ~~v~i~~~g~~-----------s~l~n~f~~~~~~~I~~~l~~~ic~~i~~~i~-~ln~~L~~lp~ 226 (502)
|+..+...++. +-. +.+.+.|.+.+.+.+++.+.+++|+.++ .++..+..+--
T Consensus 122 G~p~v~~~~C~~~v~~~~i~l~gg~-~~l~~~f~~~i~~~l~~~l~~~iCp~i~~~i~~~~~~~l~ 186 (223)
T cd00025 122 GRPKLSLSDCSSTVGSLRVHLGGSL-GWLAKLFMNFIESLLKKVLKGQLCPVIDASLVSMLESLLQ 186 (223)
T ss_pred CCeEEEeCCCCcccCcEEEEEeCCh-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhcC
Confidence 77777776541 233 4777899999999999999999999994 56766654433
No 15
>TIGR02610 PHA_gran_rgn putative polyhydroxyalkanoic acid system protein. All members of this family are encoded by genes polyhydroxyalkanoic acid (PHA) biosynthesis and utilization genes, including proteins at found at the surface of PHA granules. Examples so far are found in the Pseudomonales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=36.88 E-value=1.4e+02 Score=24.27 Aligned_cols=30 Identities=20% Similarity=0.374 Sum_probs=21.4
Q ss_pred EEEeCcchhhHHHHHHHHHHHHHHHHHHHH
Q 010724 177 IKLDGGASWLYQGMINAFEEQIVSAVENAI 206 (502)
Q Consensus 177 i~~~g~~s~l~n~f~~~~~~~I~~~l~~~i 206 (502)
+.+.-.++|+...|...+++.|++.|.+.+
T Consensus 61 v~v~v~Lg~Ll~~f~~~Ie~~I~~~Ld~~l 90 (91)
T TIGR02610 61 IRVTAELGMLLSAMSGTIKSEIERALDKAL 90 (91)
T ss_pred EEEEEEhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444455789998887777777777776654
No 16
>smart00328 BPI1 BPI/LBP/CETP N-terminal domain. Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain
Probab=35.97 E-value=3.8e+02 Score=25.31 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccCCcccc
Q 010724 186 LYQGMINAFEEQIVSAVENAITKKLKEGI-SKLDSLLQSLPKEIP 229 (502)
Q Consensus 186 l~n~f~~~~~~~I~~~l~~~ic~~i~~~i-~~ln~~L~~lp~~~~ 229 (502)
...++.+.|.+.|.+.++..+.++||+.+ +.++..+...--.+|
T Consensus 142 ~~swl~n~f~~~i~~~i~~~l~~~IC~~i~~~i~~~l~~~L~~lp 186 (225)
T smart00328 142 VLGWLINLFRKFIENTLRNVLEGQICPVIDSAVSNKMNDYLQTLP 186 (225)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 46778899999999999999999999999 567877776544333
No 17
>PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional
Probab=29.00 E-value=36 Score=29.48 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=31.0
Q ss_pred CchhhhhhhHHHHHHhhheeeccccccccCCCc----------------eEEEEechhHHHHHHH
Q 010724 1 MKILSKILPLLLLLITSSFFSSQAQVGASNQES----------------FTSIIISQTGLDFVKD 49 (502)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P----------------Gi~~rit~~gl~y~~~ 49 (502)
||.|.+.|+.+.|++.++.+..+.+++++...+ |.++.|+..-.+-..+
T Consensus 1 Mk~l~~~l~~~~l~~~~l~~~~~~~~a~a~~~~~~~e~~N~~d~kl~~~~~kIdiN~A~~~el~~ 65 (132)
T PRK02515 1 MKRLLSLLTGFSLLLGLLGWLGTPQSAQAAELPLLAVPQNVADAKLGEFGEKIDLNNSSVRAFRQ 65 (132)
T ss_pred ChHHHHHHHHHHHHHHHHHhhcCchhhhhcccchhhhhcChhhHHHHhcCCcccCCccCHHHHHH
Confidence 899999999988887766555554444433322 5566666555544443
No 18
>PF09650 PHA_gran_rgn: Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn); InterPro: IPR013433 Proteins in this entry are encoded by genes involved in either polyhydroxyalkanoic acid (PHA) biosynthesis or utilisation, including proteins at found at the surface of PHA granules. These proteins have so far been predominantly found in the Pseudomonadales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=28.67 E-value=1e+02 Score=24.75 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=18.0
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHH
Q 010724 181 GGASWLYQGMINAFEEQIVSAVENA 205 (502)
Q Consensus 181 g~~s~l~n~f~~~~~~~I~~~l~~~ 205 (502)
-.++|+...|...+++.|++.+.+.
T Consensus 62 v~Lg~Ll~~f~~~Ie~~I~~~Ld~~ 86 (87)
T PF09650_consen 62 VKLGFLLSPFKGKIEQEIEKNLDKL 86 (87)
T ss_pred EEcHHHHHHHHHHHHHHHHHHHHhh
Confidence 3458888888777777777776654
No 19
>PF13209 DUF4017: Protein of unknown function (DUF4017)
Probab=26.53 E-value=70 Score=23.10 Aligned_cols=44 Identities=14% Similarity=0.257 Sum_probs=34.1
Q ss_pred hhhhhHHHHHHhhheeeccccccccCCCceEEEEechhHHHHHHHHH
Q 010724 5 SKILPLLLLLITSSFFSSQAQVGASNQESFTSIIISQTGLDFVKDLL 51 (502)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~PGi~~rit~~gl~y~~~~~ 51 (502)
.+++|+|++-+.||+++....+..+-+.-|-|+-+ |=.|+-.++
T Consensus 2 Kni~paL~~Y~IVCiiaii~PaSegYN~vgWKlfv---GQ~YAiPif 45 (60)
T PF13209_consen 2 KNIIPALLVYIIVCIIAIILPASEGYNTVGWKLFV---GQAYAIPIF 45 (60)
T ss_pred CcchHHHHHHHHHHHHheeeecccCccccchhhee---cchhHhHHH
Confidence 37899999999999999997776666777888877 445665553
No 20
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=26.50 E-value=28 Score=28.54 Aligned_cols=21 Identities=43% Similarity=0.460 Sum_probs=10.5
Q ss_pred hhhhhHH-HHHHhhheeecccc
Q 010724 5 SKILPLL-LLLITSSFFSSQAQ 25 (502)
Q Consensus 5 ~~~~~~~-~~~~~~~~~~~~~~ 25 (502)
||.+.|| |||..+|++|+.++
T Consensus 3 SK~~llL~l~LA~lLlisSeva 24 (95)
T PF07172_consen 3 SKAFLLLGLLLAALLLISSEVA 24 (95)
T ss_pred hhHHHHHHHHHHHHHHHHhhhh
Confidence 6765554 33434455555433
No 21
>PF05972 APC_15aa: APC 15 residue motif; InterPro: IPR009240 The 15 aa repeat is found in the APC protein family. It is involved in binding beta-catenin [] along with the IPR009223 from INTERPRO repeats. Many human cancer mutations map to the region around these motifs, and may be involved in disrupting their binding of beta-catenin.; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1JPP_C.
Probab=21.66 E-value=44 Score=17.85 Aligned_cols=11 Identities=27% Similarity=0.449 Sum_probs=5.0
Q ss_pred cccccCCCCCC
Q 010724 492 QIFIPFSNRYT 502 (502)
Q Consensus 492 ~~~~~~~~~~~ 502 (502)
-|||-||-||.
T Consensus 3 dqP~dyS~kY~ 13 (16)
T PF05972_consen 3 DQPIDYSLKYS 13 (16)
T ss_dssp -----CCCCTT
T ss_pred ccccchhhhcc
Confidence 48899999984
Done!