Query 010725
Match_columns 502
No_of_seqs 26 out of 28
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 12:56:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010725.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010725hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 96.7 0.24 8.3E-06 42.7 19.7 9 50-58 40-48 (284)
2 1i84_S Smooth muscle myosin he 95.2 0.05 1.7E-06 61.2 9.5 33 31-63 858-890 (1184)
3 1i84_S Smooth muscle myosin he 95.0 0.024 8.3E-07 63.6 6.1 36 29-64 863-898 (1184)
4 1c1g_A Tropomyosin; contractIl 88.9 10 0.00035 32.4 27.0 8 55-62 38-45 (284)
5 3na7_A HP0958; flagellar bioge 86.8 8.6 0.0003 36.1 12.5 55 227-288 32-86 (256)
6 3oja_B Anopheles plasmodium-re 83.1 12 0.0004 37.8 12.2 114 205-321 473-586 (597)
7 3na7_A HP0958; flagellar bioge 79.6 41 0.0014 31.5 16.3 73 230-302 14-86 (256)
8 3vkg_A Dynein heavy chain, cyt 77.4 1.3E+02 0.0046 38.4 20.9 26 230-255 2038-2063(3245)
9 3nmd_A CGMP dependent protein 68.3 7 0.00024 32.1 4.8 42 229-270 21-62 (72)
10 3mq9_A Bone marrow stromal ant 64.7 27 0.00092 34.5 9.2 102 181-286 360-467 (471)
11 2v71_A Nuclear distribution pr 64.7 50 0.0017 31.0 10.5 70 228-297 50-123 (189)
12 3hnw_A Uncharacterized protein 63.5 15 0.0005 32.6 6.4 62 228-289 69-130 (138)
13 2v71_A Nuclear distribution pr 60.9 69 0.0023 30.1 10.7 122 253-393 47-175 (189)
14 2fxo_A Myosin heavy chain, car 58.9 77 0.0026 27.2 10.0 94 202-299 27-120 (129)
15 2b9c_A Striated-muscle alpha t 57.7 36 0.0012 30.4 7.9 106 190-302 12-120 (147)
16 3oja_A Leucine-rich immune mol 57.6 85 0.0029 31.1 11.4 103 198-300 374-487 (487)
17 2b5u_A Colicin E3; high resolu 56.6 23 0.00079 38.0 7.4 101 95-216 323-423 (551)
18 3a7p_A Autophagy protein 16; c 56.2 45 0.0015 30.7 8.3 65 233-297 67-131 (152)
19 3oja_B Anopheles plasmodium-re 55.9 95 0.0032 31.2 11.5 26 232-257 507-532 (597)
20 3trt_A Vimentin; cytoskeleton, 47.3 37 0.0013 26.4 5.6 39 455-493 38-76 (77)
21 3he5_A Synzip1; heterodimeric 43.0 45 0.0015 25.3 5.1 41 240-280 9-49 (49)
22 2dfs_A Myosin-5A; myosin-V, in 41.5 65 0.0022 36.6 8.5 29 261-289 983-1011(1080)
23 2v66_B Nuclear distribution pr 41.4 1.8E+02 0.0061 25.3 10.7 80 234-313 3-90 (111)
24 3vkg_A Dynein heavy chain, cyt 37.3 3.5E+02 0.012 34.8 14.4 31 407-437 2121-2155(3245)
25 1dip_A Delta-sleep-inducing pe 37.2 17 0.00056 30.4 2.2 29 269-297 15-43 (78)
26 3a6m_A Protein GRPE, HSP-70 co 36.6 43 0.0015 30.7 5.1 58 218-280 1-58 (177)
27 3tnu_B Keratin, type II cytosk 34.7 2.1E+02 0.0073 24.3 9.8 58 229-289 38-95 (129)
28 3tnu_A Keratin, type I cytoske 32.4 2.4E+02 0.0081 24.1 10.2 59 228-289 39-97 (131)
29 2dfs_A Myosin-5A; myosin-V, in 32.3 6.1E+02 0.021 28.9 14.5 13 376-388 1020-1032(1080)
30 2oqq_A Transcription factor HY 31.9 71 0.0024 24.0 4.6 33 265-297 6-38 (42)
31 1cii_A Colicin IA; bacteriocin 31.8 5E+02 0.017 28.2 12.6 127 220-391 356-482 (602)
32 3zbh_A ESXA; unknown function, 31.3 70 0.0024 24.5 4.8 37 454-490 11-47 (99)
33 1gk4_A Vimentin; intermediate 31.0 85 0.0029 25.3 5.4 35 228-265 34-71 (84)
34 3tnu_A Keratin, type I cytoske 30.7 2.5E+02 0.0087 24.0 11.0 83 31-151 46-128 (131)
35 3iv1_A Tumor susceptibility ge 30.5 1.7E+02 0.0058 24.2 7.2 63 209-282 11-73 (78)
36 1zxa_A CGMP-dependent protein 30.1 68 0.0023 25.9 4.6 39 247-285 10-48 (67)
37 3mtu_A Tropomyosin alpha-1 cha 30.0 1.5E+02 0.0051 23.7 6.7 49 261-310 8-65 (75)
38 1ci6_A Transcription factor AT 29.9 1.4E+02 0.0047 23.1 6.2 14 263-276 45-58 (63)
39 1fxk_C Protein (prefoldin); ar 29.8 2E+02 0.0069 24.0 7.8 64 272-337 4-67 (133)
40 4etp_A Kinesin-like protein KA 29.1 86 0.0029 31.7 6.3 10 462-471 328-337 (403)
41 3hnw_A Uncharacterized protein 28.2 2.5E+02 0.0085 24.8 8.3 15 191-205 31-45 (138)
42 1gd2_E Transcription factor PA 27.9 99 0.0034 24.8 5.2 43 245-287 26-68 (70)
43 1ic2_A Tropomyosin alpha chain 27.9 2.2E+02 0.0075 22.6 7.3 50 237-286 9-58 (81)
44 1gk4_A Vimentin; intermediate 27.6 2.4E+02 0.0081 22.6 9.3 78 37-152 1-78 (84)
45 1fzc_C Fibrin; blood coagulati 27.0 48 0.0016 33.2 3.9 44 228-285 5-48 (319)
46 4emc_A Monopolin complex subun 26.4 1.6E+02 0.0056 27.9 7.2 50 204-257 1-50 (190)
47 4etp_A Kinesin-like protein KA 26.0 89 0.003 31.6 5.8 10 326-335 111-120 (403)
48 3mq7_A Bone marrow stromal ant 25.7 1.3E+02 0.0043 26.9 5.9 46 452-497 50-102 (121)
49 1ci6_A Transcription factor AT 25.5 1.1E+02 0.0039 23.5 5.0 31 261-291 22-52 (63)
50 2w83_C C-JUN-amino-terminal ki 25.4 1.6E+02 0.0055 24.5 6.1 59 86-158 9-67 (77)
51 1wj5_A Hypothetical protein (r 25.4 72 0.0024 28.5 4.3 19 412-430 77-95 (120)
52 1vcs_A Vesicle transport throu 24.7 2.5E+02 0.0087 23.2 7.4 77 233-311 11-88 (102)
53 3o0z_A RHO-associated protein 24.2 4.3E+02 0.015 24.5 10.0 30 228-257 42-71 (168)
54 3mq7_A Bone marrow stromal ant 23.8 1.5E+02 0.005 26.5 6.0 83 212-295 15-104 (121)
55 3iv1_A Tumor susceptibility ge 22.5 2.8E+02 0.0097 22.9 7.1 52 238-289 15-73 (78)
56 2qyw_A Vesicle transport throu 22.3 3.3E+02 0.011 22.6 7.6 72 232-304 20-92 (102)
57 3nmd_A CGMP dependent protein 22.1 2.1E+02 0.007 23.5 6.1 39 250-288 21-59 (72)
58 2yy0_A C-MYC-binding protein; 22.1 65 0.0022 24.5 3.0 27 247-273 18-44 (53)
59 2e7s_A RAB guanine nucleotide 22.0 86 0.0029 28.3 4.2 27 229-255 3-29 (135)
60 3ghg_A Fibrinogen alpha chain; 22.0 2.3E+02 0.008 30.7 8.1 43 227-269 109-152 (562)
61 2jee_A YIIU; FTSZ, septum, coi 21.6 3.5E+02 0.012 22.5 9.4 67 251-317 9-79 (81)
62 4ani_A Protein GRPE; chaperone 21.2 5.3E+02 0.018 24.4 11.4 13 342-354 135-147 (213)
63 1ses_A Seryl-tRNA synthetase; 21.1 1.5E+02 0.0052 30.0 6.3 79 210-290 10-92 (421)
64 3tnu_B Keratin, type II cytosk 21.1 3.8E+02 0.013 22.7 10.9 82 32-151 45-126 (129)
65 4fla_A Regulation of nuclear P 20.8 3.1E+02 0.011 24.6 7.7 34 232-265 84-117 (152)
66 3u06_A Protein claret segregat 20.8 1.8E+02 0.0063 29.5 6.9 48 267-314 8-55 (412)
67 3mq9_A Bone marrow stromal ant 20.5 1.3E+02 0.0043 29.7 5.5 43 451-493 421-470 (471)
68 4e61_A Protein BIM1; EB1-like 20.3 1.6E+02 0.0056 25.6 5.5 38 252-289 8-52 (106)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.73 E-value=0.24 Score=42.65 Aligned_cols=9 Identities=22% Similarity=0.387 Sum_probs=3.2
Q ss_pred HhhHHHHHH
Q 010725 50 ENSATELSE 58 (502)
Q Consensus 50 e~s~~e~~~ 58 (502)
+....++..
T Consensus 40 ~~~~~~~~~ 48 (284)
T 1c1g_A 40 EDELVSLQK 48 (284)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.24 E-value=0.05 Score=61.15 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Q 010725 31 RFREVLAELNRERQAREAAENSATELSEKFNRL 63 (502)
Q Consensus 31 ~~~~l~ael~~er~ar~aae~s~~e~~~~f~rl 63 (502)
.+.++-.+|..-+..-...+....+++.....|
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~L 890 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQL 890 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333343333333333333333334444444333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.00 E-value=0.024 Score=63.60 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhH
Q 010725 29 VERFREVLAELNRERQAREAAENSATELSEKFNRLK 64 (502)
Q Consensus 29 ~~~~~~l~ael~~er~ar~aae~s~~e~~~~f~rlk 64 (502)
.+++.++-+.|.+....+..++.....++...+.++
T Consensus 863 ~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~ 898 (1184)
T 1i84_S 863 DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ 898 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555544444444
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=88.90 E-value=10 Score=32.44 Aligned_cols=8 Identities=13% Similarity=0.393 Sum_probs=2.9
Q ss_pred HHHHHHHh
Q 010725 55 ELSEKFNR 62 (502)
Q Consensus 55 e~~~~f~r 62 (502)
.+...+..
T Consensus 38 ~~~~~~~~ 45 (284)
T 1c1g_A 38 QLEDELVS 45 (284)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=86.81 E-value=8.6 Score=36.12 Aligned_cols=55 Identities=4% Similarity=0.092 Sum_probs=39.4
Q ss_pred eeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 010725 227 IEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNL 288 (502)
Q Consensus 227 IEVSqLEasis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~l 288 (502)
-||..|++.+.+++..+......++++++.....+..|. .++.++..+..++.+.
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~-------~~~~ri~~~~~~l~~v 86 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQ-------DTNAKIASIQKKMSEI 86 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcc
Confidence 567788888888888877777777777666665555555 7777777777776443
No 6
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.09 E-value=12 Score=37.83 Aligned_cols=114 Identities=8% Similarity=0.016 Sum_probs=47.3
Q ss_pred hhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHH
Q 010725 205 DATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDK 284 (502)
Q Consensus 205 da~~ksrn~aReqmeqrny~IAIEVSqLEasis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~k 284 (502)
+...+.-+..++.++.+--...+.+.++......+.+++.+-......+++........+.+..++...+++.+.+++..
T Consensus 473 ~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~ 552 (597)
T 3oja_B 473 IQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQ 552 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHH
Confidence 33334444444455544434444443333333333333332222222222222222333333333333444444444444
Q ss_pred hhhhhhhchhHHHHhhhHHhHHHHHHHHHHhhcCCCc
Q 010725 285 LKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNL 321 (502)
Q Consensus 285 l~~lE~qr~lL~dql~svs~Ihd~L~~vi~~vdd~k~ 321 (502)
+ +.++..+.+.-.-...+...+....+.++++-.
T Consensus 553 ~---~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~ 586 (597)
T 3oja_B 553 L---DNKRAKQAELRQETSLKRQKVKQLEAKKNRNPD 586 (597)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred H---hhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4 333444444444556666777777777776654
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=79.62 E-value=41 Score=31.54 Aligned_cols=73 Identities=16% Similarity=0.278 Sum_probs=30.2
Q ss_pred hhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhH
Q 010725 230 SELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYV 302 (502)
Q Consensus 230 SqLEasis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~sv 302 (502)
..+...|.+++.....--..+..|+..+..-...+..+..++..++..+..++..+..+..+-.-.-.+++.+
T Consensus 14 Q~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v 86 (256)
T 3na7_A 14 SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEI 86 (256)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3344444444443333334444444444444444444444444444444444444433333333333334433
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=77.41 E-value=1.3e+02 Score=38.37 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=12.4
Q ss_pred hhhHHhhhhchHHHhhhhhhHHHHHH
Q 010725 230 SELEATISGLREEVAKKSSFIENLEK 255 (502)
Q Consensus 230 SqLEasis~lr~eva~kss~~e~l~k 255 (502)
.+||+.|..|+++.+...++.+.|+.
T Consensus 2038 ~~le~~l~~L~~~~~~~~~ek~~L~~ 2063 (3245)
T 3vkg_A 2038 TALEKSIATYKEEYATLIRETEQIKT 2063 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555444444444433
No 9
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=68.30 E-value=7 Score=32.07 Aligned_cols=42 Identities=24% Similarity=0.437 Sum_probs=33.3
Q ss_pred ehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHh
Q 010725 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQ 270 (502)
Q Consensus 229 VSqLEasis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E 270 (502)
|-+|+..+..-.+|+..|-..++.|++.+.+||..|.+|..+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqse 62 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNE 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888887778888888888888888888888888855553
No 10
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=64.70 E-value=27 Score=34.48 Aligned_cols=102 Identities=17% Similarity=0.288 Sum_probs=61.5
Q ss_pred CchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhcceeeee--ehhhHHhhhhchHHHhhh----hhhHHHHH
Q 010725 181 GLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIE--VSELEATISGLREEVAKK----SSFIENLE 254 (502)
Q Consensus 181 GL~aiaygv~KRtneiveell~Q~da~~ksrn~aReqmeqrny~IAIE--VSqLEasis~lr~eva~k----ss~~e~l~ 254 (502)
.+..+.+|-. =..+.++++-.+++... ++.+.++|-+||.=.|. ++++++....+|-..+.- -+.-++|+
T Consensus 360 ~~~~vl~G~~-t~eeal~~~~~~i~~~l---~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (471)
T 3mq9_A 360 AVINAASGRQ-TVDEALKDAQTRITAAR---DGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLD 435 (471)
T ss_dssp HHHHHHHSSS-CHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHHHH---HhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHH
Confidence 4455555532 34556666666666555 33566667777764442 444555554444433221 13457888
Q ss_pred HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 010725 255 KSLIEKDEKVAEIESQGLELRQLVNEYEDKLK 286 (502)
Q Consensus 255 ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~ 286 (502)
|.++.-.++|.|+|-|+-.+...+...++.++
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 436 AEKAQGQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888788888888877777777777666663
No 11
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=64.66 E-value=50 Score=31.04 Aligned_cols=70 Identities=16% Similarity=0.196 Sum_probs=53.4
Q ss_pred eehhhHHhhhhchHHHhhhhhhHHHH----HHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHH
Q 010725 228 EVSELEATISGLREEVAKKSSFIENL----EKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVD 297 (502)
Q Consensus 228 EVSqLEasis~lr~eva~kss~~e~l----~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~d 297 (502)
|+.++|..++.|+..++.-..+++.| ..+.++--..|+.|++|+..|+..+..|-.+++.||..+.-|=.
T Consensus 50 eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr 123 (189)
T 2v71_A 50 QLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 123 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 57778888888888888888888876 34444445568888999999999999998888888866554433
No 12
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=63.51 E-value=15 Score=32.62 Aligned_cols=62 Identities=21% Similarity=0.297 Sum_probs=46.1
Q ss_pred eehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 010725 228 EVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (502)
Q Consensus 228 EVSqLEasis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE 289 (502)
|.-++...+..|+.++.....++.+|-..+.....++.++.++...+++.+.+|+.++..|+
T Consensus 69 El~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 69 DYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555566666667777788888888888888888888888888888888888777766
No 13
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=60.91 E-value=69 Score=30.14 Aligned_cols=122 Identities=20% Similarity=0.316 Sum_probs=62.1
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhh----hhchhHHHHhhhHHhHHHHHHHHHHhhcCCCcccccccc
Q 010725 253 LEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE----SHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSE 328 (502)
Q Consensus 253 l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE----~qr~lL~dql~svs~Ihd~L~~vi~~vdd~k~~~s~LsE 328 (502)
|++.+..-+.+++.+...+..|+.-++.+-.|+.... .+-..|=+.+..+..+++.|-.=|.-+.-...
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~ND------- 119 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQAND------- 119 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------
Confidence 3444444444444444444444444444444443333 23455667778888888888887777765444
Q ss_pred ccCCCcccchhHHHH---HHHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHhhhhHHH
Q 010725 329 SLFLPQETDMEENIR---ASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVS 393 (502)
Q Consensus 329 s~f~~~etD~ee~lK---~sL~g~ksI~eLAkeV~~Kv~~~~E~kkkE~keLE~sV~~L~kEneDI~s 393 (502)
|.+...| .+++.+++-|.-|-+ -+.|+|..=.++-.|..++.+|..|-+|...
T Consensus 120 --------dlEr~~R~~~~SleD~e~kln~aiE----r~alLE~El~EKe~l~~~~QRLkdE~rDLk~ 175 (189)
T 2v71_A 120 --------DLERAKRATIMSLEDFEQRLNQAIE----RNAFLESELDEKESLLVSVQRLKDEARDLRQ 175 (189)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCC------------
T ss_pred --------HHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555544 455555555553322 2356666666677888888899888887643
No 14
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=58.90 E-value=77 Score=27.21 Aligned_cols=94 Identities=17% Similarity=0.280 Sum_probs=54.9
Q ss_pred HhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 010725 202 GQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEY 281 (502)
Q Consensus 202 ~Q~da~~ksrn~aReqmeqrny~IAIEVSqLEasis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~ 281 (502)
..+....+.|.+ |+..+-..--|...|-..+..-++-++..-..++.|.++-.+-+.+|.+++..++...+.+..+
T Consensus 27 e~l~k~e~~r~e----le~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L 102 (129)
T 2fxo_A 27 EALEKSEARRKE----LEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAEL 102 (129)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444 4444444455556666666666666677777777777666666777777766666666666666
Q ss_pred HHHhhhhhhhchhHHHHh
Q 010725 282 EDKLKNLESHRPLLVDQL 299 (502)
Q Consensus 282 E~kl~~lE~qr~lL~dql 299 (502)
...-+.++..-.-|-+++
T Consensus 103 ~~~kkkle~e~~~Lk~~l 120 (129)
T 2fxo_A 103 TAKKRKLEDECSELKRDI 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555554444443333333
No 15
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=57.74 E-value=36 Score=30.45 Aligned_cols=106 Identities=16% Similarity=0.182 Sum_probs=66.4
Q ss_pred hhchhHHHHHHHHhhhhhhhhhh---HHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHH
Q 010725 190 IKRTNEIVEELVGQIDATAKSRN---DVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAE 266 (502)
Q Consensus 190 ~KRtneiveell~Q~da~~ksrn---~aReqmeqrny~IAIEVSqLEasis~lr~eva~kss~~e~l~ks~~eke~~i~e 266 (502)
+.|+.+-+.......+.+.|.-+ ++|-.+++|.+.-.=-+.+||..+ ..-....+.-.+...+-..|+.-
T Consensus 12 Ler~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qL-------keak~~aeeadrKyeE~~RKl~~ 84 (147)
T 2b9c_A 12 LDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQL-------KEAKHIAEDADRKYEEVARKLVI 84 (147)
T ss_dssp CGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHH
Confidence 34555555556666666655544 578888888886555556666665 33333344444445555566666
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhH
Q 010725 267 IESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYV 302 (502)
Q Consensus 267 le~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~sv 302 (502)
++.+.+-..+++...+.+++.|+..=..+-.+|.|+
T Consensus 85 ~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsL 120 (147)
T 2b9c_A 85 IESDLERAEERAELSEGKCAELEEELKTVTNNLKSL 120 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666777777777777777777776656666666664
No 16
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=57.62 E-value=85 Score=31.10 Aligned_cols=103 Identities=18% Similarity=0.159 Sum_probs=48.0
Q ss_pred HHHHHhhhhhhhhhhHHHHHhhhhcceeee-eehhhH---HhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHH----
Q 010725 198 EELVGQIDATAKSRNDVREQMEQRNFEIAI-EVSELE---ATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIES---- 269 (502)
Q Consensus 198 eell~Q~da~~ksrn~aReqmeqrny~IAI-EVSqLE---asis~lr~eva~kss~~e~l~ks~~eke~~i~ele~---- 269 (502)
..+-.+..+-...+.+.++++.|..+|.+- ++..++ ..+....+..++.-.+.+...+.....-.+|..+.+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (487)
T 3oja_A 374 EQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENAR 453 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhh
Confidence 334444445555666666776666643333 233333 223223333333344444433333333333333333
Q ss_pred ---hHHHHHHHHHHHHHHhhhhhhhchhHHHHhh
Q 010725 270 ---QGLELRQLVNEYEDKLKNLESHRPLLVDQLN 300 (502)
Q Consensus 270 ---E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~ 300 (502)
++.++...+.+-..+++++-.+...|+.|++
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (487)
T 3oja_A 454 LKKLNGEADLALASANATLQELVVREQNLASQLG 487 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhhhhhhhHhcccHHHHHHHHHHHHHHhcC
Confidence 4444444455555555555566666666653
No 17
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=56.58 E-value=23 Score=38.02 Aligned_cols=101 Identities=15% Similarity=0.227 Sum_probs=53.9
Q ss_pred cchhhHHHHHHhhhHHHHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccCCCCCCCCCCCC
Q 010725 95 NDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLP 174 (502)
Q Consensus 95 ~~~~s~~l~~v~~~~de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~sg~Ekis~k~s~~k~f~~~~lP 174 (502)
.++.-.||.+++|.-...+..++-+++. .+++++++..+-..|-..+- -+++|-+|...++-
T Consensus 323 ~e~a~ael~~a~k~~a~~~er~~~t~~~--------------~~~~~~~~~~~n~~~~~~~~----~~~~f~~~n~~p~~ 384 (551)
T 2b5u_A 323 YERARAELNQANEDVARNQERQAKAVQV--------------YNSRKSELDAANKTLADAIA----EIKQFNRFAHDPMA 384 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH----HHHHHGGGTTCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhhHHHHHhhhhHHHHHHH----hhhhhhhhccChhh
Confidence 3444455666666555555555544444 34445544333333322222 23566666444443
Q ss_pred CCcccCCchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHH
Q 010725 175 RSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVRE 216 (502)
Q Consensus 175 ~SqKYtGL~aiaygv~KRtneiveell~Q~da~~ksrn~aRe 216 (502)
-- .++.+.-.. -++|+++=|.-+=.+.|++++.-.+|.-
T Consensus 385 ~G--h~~w~~~~~-~~~~~~~dv~~~~a~~d~~~~~~s~~~~ 423 (551)
T 2b5u_A 385 GG--HRMWQMAGL-KAQRAQTDVNNKQAAFDAAAKEKSDADA 423 (551)
T ss_dssp TH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc--chhhhhccc-hhhhhhhhhhhHHHHHHHHhhcccchhh
Confidence 32 122222111 5889999999999999999776655543
No 18
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=56.17 E-value=45 Score=30.67 Aligned_cols=65 Identities=20% Similarity=0.234 Sum_probs=53.8
Q ss_pred HHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHH
Q 010725 233 EATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVD 297 (502)
Q Consensus 233 Easis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~d 297 (502)
-.+|..|+.+++.....+.+|+..+.+|..-+..+.-|+..|+=....++.+++.++.-+.-|++
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777888888888888888888888888889999999999999999999976666655
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=55.91 E-value=95 Score=31.23 Aligned_cols=26 Identities=19% Similarity=0.118 Sum_probs=10.0
Q ss_pred hHHhhhhchHHHhhhhhhHHHHHHHH
Q 010725 232 LEATISGLREEVAKKSSFIENLEKSL 257 (502)
Q Consensus 232 LEasis~lr~eva~kss~~e~l~ks~ 257 (502)
|+..+..+++..+........++++.
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTEA 532 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 33333333333333333333333333
No 20
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=47.28 E-value=37 Score=26.42 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 010725 455 DEIYNLAGALENIVKASQLEIVELRHSVEELRYFLSFSN 493 (502)
Q Consensus 455 dEVySLAsalEniMK~sqlEI~eLrhslEEsRse~~~Lq 493 (502)
+|+-..|+.=...+...+.||++|++.+.-+..|.+-|+
T Consensus 38 eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 38 ADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356666777777899999999999999999999987765
No 21
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=42.96 E-value=45 Score=25.27 Aligned_cols=41 Identities=29% Similarity=0.344 Sum_probs=31.0
Q ss_pred hHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 010725 240 REEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNE 280 (502)
Q Consensus 240 r~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e 280 (502)
-.|||+--.+-|.|.|.---|..-|+-+++|+-.|+.+|++
T Consensus 9 enevaslenenetlkkknlhkkdliaylekeianlrkkiee 49 (49)
T 3he5_A 9 ENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIEE 49 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhcC
Confidence 34567777777788777777778888889988888887753
No 22
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=41.48 E-value=65 Score=36.64 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=13.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 010725 261 DEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (502)
Q Consensus 261 e~~i~ele~E~~~lKe~V~e~E~kl~~lE 289 (502)
+.++..++.|+..+++.+.++-...+.++
T Consensus 983 ~~~v~~L~~e~~~l~~~~~~~~ke~~~le 1011 (1080)
T 2dfs_A 983 TNRVLSLQEEIAKLRKELHQTQTEKKTIE 1011 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555444444443333
No 23
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=41.36 E-value=1.8e+02 Score=25.34 Aligned_cols=80 Identities=13% Similarity=0.191 Sum_probs=52.7
Q ss_pred HhhhhchHHHhhhhhhHHHHHH----HHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHH----HhhhHHhH
Q 010725 234 ATISGLREEVAKKSSFIENLEK----SLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVD----QLNYVSKI 305 (502)
Q Consensus 234 asis~lr~eva~kss~~e~l~k----s~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~d----ql~svs~I 305 (502)
..++.|+..++.=..++|.|-. +.++--..++.|++|+..|++....|-.+++.||..+.=|=. ...|+.-+
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 3455666666666666766644 334445679999999999999999999999999965554433 23344444
Q ss_pred HHHHHHHH
Q 010725 306 HDQVDDII 313 (502)
Q Consensus 306 hd~L~~vi 313 (502)
...+...|
T Consensus 83 E~k~n~ai 90 (111)
T 2v66_B 83 EQRLNQAI 90 (111)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444333
No 24
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=37.27 E-value=3.5e+02 Score=34.81 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=19.0
Q ss_pred CCCchhhHHHHHHhhhhhhcccc----chhcccCC
Q 010725 407 PSSKTNELFKVAENGLREAGIDF----KFSKLLSD 437 (502)
Q Consensus 407 ~eqkrseLLQiAE~GLrevGfgF----~~~~i~Gd 437 (502)
+..-|..+++-=-.-|++.||.| .+...+|+
T Consensus 2121 ~~~~R~~l~~~W~~~l~~~~Ip~s~~~~l~~~L~~ 2155 (3245)
T 3vkg_A 2121 DQNFRTDLMRKWMIRLDSVGIKFKSDLSVPSFLSK 2155 (3245)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCCTTCCHHHHTSC
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHcCC
Confidence 44556677776667777788754 34445544
No 25
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=37.19 E-value=17 Score=30.37 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=24.8
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhhchhHHH
Q 010725 269 SQGLELRQLVNEYEDKLKNLESHRPLLVD 297 (502)
Q Consensus 269 ~E~~~lKe~V~e~E~kl~~lE~qr~lL~d 297 (502)
+||+.||++|.+|+.+...||..+.+|-.
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999987777653
No 26
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=36.59 E-value=43 Score=30.73 Aligned_cols=58 Identities=22% Similarity=0.264 Sum_probs=24.5
Q ss_pred hhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 010725 218 MEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNE 280 (502)
Q Consensus 218 meqrny~IAIEVSqLEasis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e 280 (502)
|+.||-++. +++.+..+..+++.-...++.|++.+.+...++.-+.-|++++|.+...
T Consensus 1 ~~~~~~~~~-----~~~~~~~~~~e~~~l~~~~~~l~~e~~e~~d~~lR~~Ae~eN~rkR~~r 58 (177)
T 3a6m_A 1 MEERNHENT-----LEKDLEAVGQEAQALEERLKAAEEELKGLKDKYLRLLADFDNYRKRMEE 58 (177)
T ss_dssp ---CTTTSS-----SGGGGTTTHHHHSSTTTSTTGGGGTSSSHHHHHHTTTTTTTTHHHHHHH
T ss_pred Ccccccccc-----hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566665543 3344444444444433344444444444444443333355555555543
No 27
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=34.69 E-value=2.1e+02 Score=24.31 Aligned_cols=58 Identities=21% Similarity=0.335 Sum_probs=31.4
Q ss_pred ehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 010725 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (502)
Q Consensus 229 VSqLEasis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE 289 (502)
+++|--+|.+|.-|+..=-+...+|+.++.+-+..-. .++..+...|..+|..|..+.
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~---~~l~~~q~~i~~lE~eL~~~r 95 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGE---LALKDARNKLAELEEALQKAK 95 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHH
Confidence 4445555555555554444444555555544443322 256677777777777775443
No 28
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=32.41 E-value=2.4e+02 Score=24.15 Aligned_cols=59 Identities=29% Similarity=0.417 Sum_probs=34.8
Q ss_pred eehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 010725 228 EVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (502)
Q Consensus 228 EVSqLEasis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE 289 (502)
|+++|--+|.+|.-|+..--+...+|+.++.+-+..-. .++..++..|..+|..|..+.
T Consensus 39 Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~---~~l~~~q~~i~~lE~eL~~~r 97 (131)
T 3tnu_A 39 EISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYC---MQLAQIQEMIGSVEEQLAQLR 97 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666665555555566555555444332 366677777888777775444
No 29
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=32.30 E-value=6.1e+02 Score=28.90 Aligned_cols=13 Identities=15% Similarity=0.304 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHhh
Q 010725 376 SLNEAVGQLVKEK 388 (502)
Q Consensus 376 eLE~sV~~L~kEn 388 (502)
+|++.|..|.+||
T Consensus 1020 ~L~~kv~~L~~e~ 1032 (1080)
T 2dfs_A 1020 ETEQLVSELKEQN 1032 (1080)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 30
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=31.87 E-value=71 Score=24.03 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=17.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHH
Q 010725 265 AEIESQGLELRQLVNEYEDKLKNLESHRPLLVD 297 (502)
Q Consensus 265 ~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~d 297 (502)
++||..+-+|..++.+||.++..|..-+.+|..
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 444444445555555555555555555555543
No 31
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=31.82 E-value=5e+02 Score=28.16 Aligned_cols=127 Identities=17% Similarity=0.243 Sum_probs=81.8
Q ss_pred hhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHh
Q 010725 220 QRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQL 299 (502)
Q Consensus 220 qrny~IAIEVSqLEasis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql 299 (502)
||=-.+-=|..++++.|+-++--|...+.++-..+..+..+++.-..++..+.++++++.+-..|. +....+-|.+
T Consensus 356 QRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiAE~KrK~----dE~~aIKDAV 431 (602)
T 1cii_A 356 QRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIAEEKRKQ----DELKATKDAI 431 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhh----hHHHHHHHHH
Confidence 553334457788899998888888888888888877777776666666666667777765543332 2333455666
Q ss_pred hhHHhHHHHHHHHHHhhcCCCccccccccccCCCcccchhHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHH
Q 010725 300 NYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNE 379 (502)
Q Consensus 300 ~svs~Ihd~L~~vi~~vdd~k~~~s~LsEs~f~~~etD~ee~lK~sL~g~ksI~eLAkeV~~Kv~~~~E~kkkE~keLE~ 379 (502)
...+-++..+.+-+ +++. ..||+++..+ -+=|.+++.++
T Consensus 432 kfTAdFykkIsEky----GeKy-------------------------------kkIAkELAe~------fKGKKIRSvDD 470 (602)
T 1cii_A 432 NFTTEFLKSVSEKY----GAKA-------------------------------EQLAREMAGQ------AKGKKIRNVEE 470 (602)
T ss_dssp HHHHHHHHHHHHHH----CTHH-------------------------------HHHHHHHHHT------TTTCBCCCHHH
T ss_pred HHHHHHHHHHHHHH----HHHH-------------------------------HHHHHHHHHh------cCCCccCCHHH
Confidence 66666655555443 2222 3566666664 34477888888
Q ss_pred HHHHHHHhhhhH
Q 010725 380 AVGQLVKEKEHI 391 (502)
Q Consensus 380 sV~~L~kEneDI 391 (502)
-+.++.|=+..+
T Consensus 471 ALaSfEKyk~Nl 482 (602)
T 1cii_A 471 ALKTYEKYRADI 482 (602)
T ss_dssp HHHHHHHTHHHH
T ss_pred HHHHHHHHhcCh
Confidence 888887755544
No 32
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=31.26 E-value=70 Score=24.48 Aligned_cols=37 Identities=14% Similarity=0.072 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010725 454 EDEIYNLAGALENIVKASQLEIVELRHSVEELRYFLS 490 (502)
Q Consensus 454 edEVySLAsalEniMK~sqlEI~eLrhslEEsRse~~ 490 (502)
-+++-.+|+.+.+.-..++..+..|+..+..+...|.
T Consensus 11 ~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~~W~ 47 (99)
T 3zbh_A 11 PEELRGVARQYNVESSNVTELIARLDQMSHTLQGIWE 47 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4679999999999999999999999999998866553
No 33
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=31.03 E-value=85 Score=25.31 Aligned_cols=35 Identities=29% Similarity=0.438 Sum_probs=24.9
Q ss_pred eehhhHHhhhhchHHHhhhhhhHHHHHHHHHHh---HHHHH
Q 010725 228 EVSELEATISGLREEVAKKSSFIENLEKSLIEK---DEKVA 265 (502)
Q Consensus 228 EVSqLEasis~lr~eva~kss~~e~l~ks~~ek---e~~i~ 265 (502)
-++.||+.+..+|.+.+.-..+...| +..| |.+|+
T Consensus 34 ~i~~lE~eL~~~r~e~~~q~~EYq~L---lnvK~~Ld~EIa 71 (84)
T 1gk4_A 34 TIGRLQDEIQNMKEEMARHLREYQDL---LNVKMALDIEIA 71 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHH
Confidence 35778888888888888887777777 5444 44554
No 34
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=30.69 E-value=2.5e+02 Score=23.96 Aligned_cols=83 Identities=20% Similarity=0.216 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHH
Q 010725 31 RFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKD 110 (502)
Q Consensus 31 ~~~~l~ael~~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~d 110 (502)
.+..|-+||+.-+..+.+.|.+.++.+.++..=-.=++..| +.-=.++...|.
T Consensus 46 ~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i---------------------------~~lE~eL~~~r~ 98 (131)
T 3tnu_A 46 TMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMI---------------------------GSVEEQLAQLRC 98 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHH
Confidence 35566777777777777777777777766653222222222 111124456677
Q ss_pred HHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhh
Q 010725 111 EVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHML 151 (502)
Q Consensus 111 e~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL 151 (502)
+++.|+.+.-. .--.+-+|-.||.|-.++|
T Consensus 99 em~~ql~EYq~-----------Ll~vKl~Ld~EIatYRkLL 128 (131)
T 3tnu_A 99 EMEQQNQEYKI-----------LLDVKTRLEQEIATYRRLL 128 (131)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhH
Confidence 78887766211 1222556899999999887
No 35
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=30.54 E-value=1.7e+02 Score=24.21 Aligned_cols=63 Identities=22% Similarity=0.335 Sum_probs=36.5
Q ss_pred hhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHH
Q 010725 209 KSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYE 282 (502)
Q Consensus 209 ksrn~aReqmeqrny~IAIEVSqLEasis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E 282 (502)
|=|.+.||.|.|-.-+| .|+-+-.+|+-.=.+-++.. +..-+..-+++++.++.|+++..+++
T Consensus 11 KLRrrl~E~~~q~qaEl--------~sLrrT~~EL~~G~~KL~~m---i~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 11 KLRWRMKEEMDRAQAEL--------NALKRTEEDLKKGHQKLEEM---VTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHH--------HHHHHHHHHHHhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788887766544 35555556655555555544 44445555555555556665555554
No 36
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=30.06 E-value=68 Score=25.87 Aligned_cols=39 Identities=31% Similarity=0.436 Sum_probs=23.2
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 010725 247 SSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL 285 (502)
Q Consensus 247 ss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl 285 (502)
++.+|.+.+-+..|+.+|.+||.++.+-.+.|.+|...|
T Consensus 10 ~~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~L 48 (67)
T 1zxa_A 10 SELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKL 48 (67)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777788888888888876666666666655444
No 37
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=30.03 E-value=1.5e+02 Score=23.74 Aligned_cols=49 Identities=16% Similarity=0.165 Sum_probs=29.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH-------Hhhhhh--hhchhHHHHhhhHHhHHHHHH
Q 010725 261 DEKVAEIESQGLELRQLVNEYED-------KLKNLE--SHRPLLVDQLNYVSKIHDQVD 310 (502)
Q Consensus 261 e~~i~ele~E~~~lKe~V~e~E~-------kl~~lE--~qr~lL~dql~svs~Ihd~L~ 310 (502)
..|+..|..|..++.+.+..+|. ||+..| -|.+- .+....+.+|.++||
T Consensus 8 KkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e-~e~~~l~~~I~~ILY 65 (75)
T 3mtu_A 8 KKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQENE-GENDPVLQRIVDILY 65 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTG-GGTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHh
Confidence 34556677778888888888887 888777 11110 022344556666665
No 38
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=29.88 E-value=1.4e+02 Score=23.07 Aligned_cols=14 Identities=7% Similarity=0.147 Sum_probs=5.3
Q ss_pred HHHHHHHhHHHHHH
Q 010725 263 KVAEIESQGLELRQ 276 (502)
Q Consensus 263 ~i~ele~E~~~lKe 276 (502)
+|+.|+.|+..||+
T Consensus 45 ~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 45 RADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 39
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=29.81 E-value=2e+02 Score=24.03 Aligned_cols=64 Identities=14% Similarity=0.254 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHHHHHHHHHhhcCCCccccccccccCCCcccc
Q 010725 272 LELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETD 337 (502)
Q Consensus 272 ~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd~L~~vi~~vdd~k~~~s~LsEs~f~~~etD 337 (502)
..|.+....|...+.++..+..-|-..+.-+....+.|..+-. .++...-=-|..++|+|....
T Consensus 4 ~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~--~~~~~~lvplg~~~yv~a~i~ 67 (133)
T 1fxk_C 4 AEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQG--KDGSETLVPVGAGSFIKAELK 67 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CTTCEEEEEEETTEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCCCeEEEEcCCCcEEEEEEC
Confidence 3455555666666666666666666666666666666665543 223221124556666655543
No 40
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=29.12 E-value=86 Score=31.69 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 010725 462 GALENIVKAS 471 (502)
Q Consensus 462 salEniMK~s 471 (502)
++|++.+.+|
T Consensus 328 ~aLg~vI~aL 337 (403)
T 4etp_A 328 SALGDVIHAL 337 (403)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4445544443
No 41
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=28.16 E-value=2.5e+02 Score=24.76 Aligned_cols=15 Identities=7% Similarity=0.337 Sum_probs=6.8
Q ss_pred hchhHHHHHHHHhhh
Q 010725 191 KRTNEIVEELVGQID 205 (502)
Q Consensus 191 KRtneiveell~Q~d 205 (502)
..+-..|++-+++|-
T Consensus 31 ~~vA~~vd~km~ei~ 45 (138)
T 3hnw_A 31 QRVASYINNKITEFN 45 (138)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344454454444
No 42
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=27.90 E-value=99 Score=24.81 Aligned_cols=43 Identities=23% Similarity=0.352 Sum_probs=30.8
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 010725 245 KKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKN 287 (502)
Q Consensus 245 ~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~ 287 (502)
.|...+..|+..+.+-+.....+..|...|++.|..|..++..
T Consensus 26 RK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 26 RKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777766666666777888888888887776643
No 43
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=27.86 E-value=2.2e+02 Score=22.61 Aligned_cols=50 Identities=18% Similarity=0.220 Sum_probs=29.0
Q ss_pred hhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 010725 237 SGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLK 286 (502)
Q Consensus 237 s~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~ 286 (502)
..|+.+.-.-..-++.++..+.+.+.+....+.|+..|+.++.-++..+-
T Consensus 9 ~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld 58 (81)
T 1ic2_A 9 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELD 58 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555666666666666666666666666666553
No 44
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=27.62 E-value=2.4e+02 Score=22.64 Aligned_cols=78 Identities=23% Similarity=0.306 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHH
Q 010725 37 AELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQL 116 (502)
Q Consensus 37 ael~~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~de~~kq~ 116 (502)
||++.=+..+.+.|.+.++.+.++..=-.=++..| +.-=.++...|.+++.|+
T Consensus 1 ~el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i---------------------------~~lE~eL~~~r~e~~~q~ 53 (84)
T 1gk4_A 1 CEVDALKGTNESLERQMREMEENFAVEAANYQDTI---------------------------GRLQDEIQNMKEEMARHL 53 (84)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHH
Confidence 35666677777788888888777754222222222 111124455677777776
Q ss_pred HHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhhh
Q 010725 117 DEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLV 152 (502)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~ 152 (502)
.+.- +.--.+-+|-.||.|=.++|=
T Consensus 54 ~EYq-----------~LlnvK~~Ld~EIatYRkLLE 78 (84)
T 1gk4_A 54 REYQ-----------DLLNVKMALDIEIATYRKLLE 78 (84)
T ss_dssp HHHH-----------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHH-----------HHHHHHHhhHHHHHHHHHHHc
Confidence 6521 112225568999999999885
No 45
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=26.96 E-value=48 Score=33.16 Aligned_cols=44 Identities=25% Similarity=0.340 Sum_probs=24.0
Q ss_pred eehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 010725 228 EVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL 285 (502)
Q Consensus 228 EVSqLEasis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl 285 (502)
|+.+||++|..+ .+.+..|...+...+.+|. .|++.|..++.+.
T Consensus 5 ~~~~lE~~Il~~-------~~~i~~L~~~l~~~~~ki~-------~L~~~i~~l~~~~ 48 (319)
T 1fzc_C 5 EIMKYEASILTH-------DSSIRYLQEIYNSNNQKIV-------NLKEKVAQLEAQC 48 (319)
T ss_dssp -----CTTTTTH-------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHS
T ss_pred HHHHHHHHhhCh-------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Confidence 788999999544 4455566555555556666 5666666666555
No 46
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=26.43 E-value=1.6e+02 Score=27.87 Aligned_cols=50 Identities=24% Similarity=0.373 Sum_probs=17.5
Q ss_pred hhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHH
Q 010725 204 IDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSL 257 (502)
Q Consensus 204 ~da~~ksrn~aReqmeqrny~IAIEVSqLEasis~lr~eva~kss~~e~l~ks~ 257 (502)
+|+-++-.+-|.+||++.. +.|+.|=.-+..|..++..|.++++.|.+.+
T Consensus 1 md~~~~YK~~~q~ql~~ad----~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql 50 (190)
T 4emc_A 1 MDPLTVYKNSVKQQIDSAD----LLVANLVNENFVLSEKLDTKATEIKQLQKQI 50 (190)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777888888765 3456666656566666665555555554433
No 47
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=26.02 E-value=89 Score=31.57 Aligned_cols=10 Identities=20% Similarity=0.298 Sum_probs=4.8
Q ss_pred cccccCCCcc
Q 010725 326 LSESLFLPQE 335 (502)
Q Consensus 326 LsEs~f~~~e 335 (502)
--+.+|-|..
T Consensus 111 ~FD~VF~~~~ 120 (403)
T 4etp_A 111 KFDKIFDQQD 120 (403)
T ss_dssp EESEEECTTC
T ss_pred EcCEEECCCC
Confidence 3445555443
No 48
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=25.69 E-value=1.3e+02 Score=26.92 Aligned_cols=46 Identities=17% Similarity=0.176 Sum_probs=36.3
Q ss_pred chhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 010725 452 TEEDEIYNLAGALENI-------VKASQLEIVELRHSVEELRYFLSFSNCNIA 497 (502)
Q Consensus 452 eeedEVySLAsalEni-------MK~sqlEI~eLrhslEEsRse~~~Lq~l~e 497 (502)
+|..=|++|--.|++- |+.++-||..|.|.|...=++.++|+...+
T Consensus 50 TCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 50 TANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 5777788888887763 889999999999998887777777765543
No 49
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=25.45 E-value=1.1e+02 Score=23.51 Aligned_cols=31 Identities=10% Similarity=0.190 Sum_probs=16.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhhhh
Q 010725 261 DEKVAEIESQGLELRQLVNEYEDKLKNLESH 291 (502)
Q Consensus 261 e~~i~ele~E~~~lKe~V~e~E~kl~~lE~q 291 (502)
-.++.+++.++..|.+...+|..++..|+..
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555433
No 50
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=25.44 E-value=1.6e+02 Score=24.50 Aligned_cols=59 Identities=31% Similarity=0.401 Sum_probs=44.0
Q ss_pred HHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhh
Q 010725 86 REKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKI 158 (502)
Q Consensus 86 r~ke~~~~~~~~~s~~l~~v~~~~de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~sg~Eki 158 (502)
++-|+.++.|..|-.-=.-+|..|++.-.++|+.+-. ++.|+.|+...-....-.-.||
T Consensus 9 kevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E--------------~e~l~~El~s~~~~~~r~~~ri 67 (77)
T 2w83_C 9 REVENLILENTQLLETKNALNIVKNDLIAKVDELTCE--------------KDVLQGELEAVKQAKLKLEEKN 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888777778999999999999998777 5668888876655544444443
No 51
>1wj5_A Hypothetical protein (riken cDNA 0610009H20); winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.4.5.59
Probab=25.38 E-value=72 Score=28.46 Aligned_cols=19 Identities=37% Similarity=0.536 Sum_probs=15.1
Q ss_pred hhHHHHHHhhhhhhccccc
Q 010725 412 NELFKVAENGLREAGIDFK 430 (502)
Q Consensus 412 seLLQiAE~GLrevGfgF~ 430 (502)
..||+-|=..|++-||-|.
T Consensus 77 ~sifKeAi~~Lqe~G~Vfq 95 (120)
T 1wj5_A 77 QRVFKNALQLLQEKGLVFQ 95 (120)
T ss_dssp HHHHHHHHHHHHHHTSEEC
T ss_pred HHHHHHHHHHHHHCCEEEe
Confidence 4566666679999999996
No 52
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=24.72 E-value=2.5e+02 Score=23.20 Aligned_cols=77 Identities=19% Similarity=0.294 Sum_probs=54.1
Q ss_pred HHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhh-hhchhHHHHhhhHHhHHHHHHH
Q 010725 233 EATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE-SHRPLLVDQLNYVSKIHDQVDD 311 (502)
Q Consensus 233 Easis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE-~qr~lL~dql~svs~Ihd~L~~ 311 (502)
|.-...+..++-.+.+-+-.+ +-.+|...|.++++.+.+..+.|...|.+++++- ..|+-+.-.+..+.+--+.|-.
T Consensus 11 E~df~~l~~~i~~kl~~i~~~--~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~ 88 (102)
T 1vcs_A 11 EQDFAVLTAEITSKIARVPRL--PPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLET 88 (102)
T ss_dssp HHHHHHHHHHHHHHHHHGGGS--CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHH
Confidence 444444555666666655444 2367788999999999999999999999999987 5677666666655554444433
No 53
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=24.21 E-value=4.3e+02 Score=24.49 Aligned_cols=30 Identities=20% Similarity=0.174 Sum_probs=18.0
Q ss_pred eehhhHHhhhhchHHHhhhhhhHHHHHHHH
Q 010725 228 EVSELEATISGLREEVAKKSSFIENLEKSL 257 (502)
Q Consensus 228 EVSqLEasis~lr~eva~kss~~e~l~ks~ 257 (502)
-++++|+.+..|++-++.=-..-..|++.+
T Consensus 42 ~~~~~E~~~rELq~~~~~L~~~k~~Leke~ 71 (168)
T 3o0z_A 42 SISQLESLNRELQERNRILENSKSQTDKDY 71 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666665555555565555
No 54
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=23.83 E-value=1.5e+02 Score=26.54 Aligned_cols=83 Identities=23% Similarity=0.328 Sum_probs=43.2
Q ss_pred hHHHHHhhhhcceeeeeehhhHHhhhhchHHH---hhhhhhHHHHHHHHHHhHH----HHHHHHHhHHHHHHHHHHHHHH
Q 010725 212 NDVREQMEQRNFEIAIEVSELEATISGLREEV---AKKSSFIENLEKSLIEKDE----KVAEIESQGLELRQLVNEYEDK 284 (502)
Q Consensus 212 n~aReqmeqrny~IAIEVSqLEasis~lr~ev---a~kss~~e~l~ks~~eke~----~i~ele~E~~~lKe~V~e~E~k 284 (502)
|--|-|||=||.---.+ .||=-+-.+||+-- +.=..-+.+|..||..+-+ +|.+++-|+..|++.+.....+
T Consensus 15 dGLrAq~ECrN~T~lLq-~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae 93 (121)
T 3mq7_A 15 DGLRAVMEARNVTHLLQ-QELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAE 93 (121)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566555332111 12222333343322 2333346667666665433 4777777777777777777777
Q ss_pred hhhhhhhchhH
Q 010725 285 LKNLESHRPLL 295 (502)
Q Consensus 285 l~~lE~qr~lL 295 (502)
+..|..++..|
T Consensus 94 ~erlr~~~~~~ 104 (121)
T 3mq7_A 94 VERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhhchhh
Confidence 65555544443
No 55
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=22.54 E-value=2.8e+02 Score=22.91 Aligned_cols=52 Identities=15% Similarity=0.284 Sum_probs=37.5
Q ss_pred hchHHHhhhhhhHHHHHHHH-------HHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 010725 238 GLREEVAKKSSFIENLEKSL-------IEKDEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (502)
Q Consensus 238 ~lr~eva~kss~~e~l~ks~-------~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE 289 (502)
++|+.+....++++.|-+.- .--+.-|..|++|...+...|+-|..|..+|+
T Consensus 15 rl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 15 RMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888887775433 23366777788888888888888887776665
No 56
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=22.28 E-value=3.3e+02 Score=22.56 Aligned_cols=72 Identities=19% Similarity=0.274 Sum_probs=49.5
Q ss_pred hHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhh-hhchhHHHHhhhHHh
Q 010725 232 LEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE-SHRPLLVDQLNYVSK 304 (502)
Q Consensus 232 LEasis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE-~qr~lL~dql~svs~ 304 (502)
.|.-...+..++-.+.+-+-.+. +-.+|...|.++++.+++..+.|...|.+++++- ..|+-+.-.+..+.+
T Consensus 20 YE~df~~l~~~i~~kl~~i~~~~-~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~ 92 (102)
T 2qyw_A 20 LHEIFRGLLEDLQGVPERLLGTA-GTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRK 92 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCC-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 34444455556666666543221 1267788899999999999999999999999987 556665555555443
No 57
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=22.13 E-value=2.1e+02 Score=23.47 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 010725 250 IENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNL 288 (502)
Q Consensus 250 ~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~l 288 (502)
+..|+.-+..|+.+|...+.-+..+...+.++|..+++|
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~L 59 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQML 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555544444444444555555554433
No 58
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=22.12 E-value=65 Score=24.53 Aligned_cols=27 Identities=30% Similarity=0.244 Sum_probs=12.5
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHhHHH
Q 010725 247 SSFIENLEKSLIEKDEKVAEIESQGLE 273 (502)
Q Consensus 247 ss~~e~l~ks~~eke~~i~ele~E~~~ 273 (502)
.+.+|.|-....+-..|+.+|..+..+
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~e 44 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKK 44 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666654444444444433333333
No 59
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.99 E-value=86 Score=28.27 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=20.2
Q ss_pred ehhhHHhhhhchHHHhhhhhhHHHHHH
Q 010725 229 VSELEATISGLREEVAKKSSFIENLEK 255 (502)
Q Consensus 229 VSqLEasis~lr~eva~kss~~e~l~k 255 (502)
||+||-+++.+|..++....-+..+++
T Consensus 3 ~s~LEd~L~~~r~~l~~~~~~~~~le~ 29 (135)
T 2e7s_A 3 LGSLEEQLNKSLKTIASQKAAIENYNQ 29 (135)
T ss_dssp ---CCSTTTHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999888877777755
No 60
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=21.97 E-value=2.3e+02 Score=30.70 Aligned_cols=43 Identities=26% Similarity=0.323 Sum_probs=35.7
Q ss_pred eeeh-hhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 010725 227 IEVS-ELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIES 269 (502)
Q Consensus 227 IEVS-qLEasis~lr~eva~kss~~e~l~ks~~eke~~i~ele~ 269 (502)
-||| +||-.|..|+++|-..-+.+-.|+..+.+---+|..||.
T Consensus 109 nE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 109 NRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677 999999999999999888888888888777777776666
No 61
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=21.61 E-value=3.5e+02 Score=22.48 Aligned_cols=67 Identities=15% Similarity=0.253 Sum_probs=39.3
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhH----HhHHHHHHHHHHhhc
Q 010725 251 ENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYV----SKIHDQVDDIIKIVD 317 (502)
Q Consensus 251 e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~sv----s~Ihd~L~~vi~~vd 317 (502)
+.|+.-+..-=..|.-+.-|+++||+....+.....++...|..|.....-+ +...++|..++..++
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e 79 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3343333333445555566778888888777777766666666665544433 345556666665554
No 62
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=21.18 E-value=5.3e+02 Score=24.40 Aligned_cols=13 Identities=38% Similarity=0.782 Sum_probs=9.0
Q ss_pred HHHHHhhhhhHHH
Q 010725 342 IRASLAGMESIYQ 354 (502)
Q Consensus 342 lK~sL~g~ksI~e 354 (502)
++.+..|+++|+.
T Consensus 135 ~~~l~eGvemi~k 147 (213)
T 4ani_A 135 AKSILQGMEMVYR 147 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4556777777776
No 63
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=21.14 E-value=1.5e+02 Score=30.03 Aligned_cols=79 Identities=13% Similarity=0.236 Sum_probs=40.9
Q ss_pred hhhHHHHHhhhhcceeeeeehhhHHh---hhhchHHHhhhhhhHHHHHHHHHHhH-HHHHHHHHhHHHHHHHHHHHHHHh
Q 010725 210 SRNDVREQMEQRNFEIAIEVSELEAT---ISGLREEVAKKSSFIENLEKSLIEKD-EKVAEIESQGLELRQLVNEYEDKL 285 (502)
Q Consensus 210 srn~aReqmeqrny~IAIEVSqLEas---is~lr~eva~kss~~e~l~ks~~eke-~~i~ele~E~~~lKe~V~e~E~kl 285 (502)
.-+..++.+..|||.+. |.++-+. --.+.-++..--+.--.++|.+..+. +...++-.++..+++.+..++.++
T Consensus 10 ~~~~~~~~~~~r~~~~~--~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 87 (421)
T 1ses_A 10 EPEVFHRAIREKGVALD--LEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEAL 87 (421)
T ss_dssp CHHHHHHHHHHHTCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888752 4443222 22222222222223333344333221 334555567777777777777777
Q ss_pred hhhhh
Q 010725 286 KNLES 290 (502)
Q Consensus 286 ~~lE~ 290 (502)
+.+++
T Consensus 88 ~~~~~ 92 (421)
T 1ses_A 88 REKEA 92 (421)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65553
No 64
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.14 E-value=3.8e+02 Score=22.73 Aligned_cols=82 Identities=17% Similarity=0.212 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHH
Q 010725 32 FREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDE 111 (502)
Q Consensus 32 ~~~l~ael~~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~de 111 (502)
+..|-+||+-=+..+.+.|.+.++.+.++..=-.=++.. ++.==.++...|.+
T Consensus 45 iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~---------------------------i~~lE~eL~~~r~e 97 (129)
T 3tnu_B 45 IQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNK---------------------------LAELEEALQKAKQD 97 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHhHHHHHHH
Confidence 455667777777777777777777766654321111211 21111244556777
Q ss_pred HHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhh
Q 010725 112 VVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHML 151 (502)
Q Consensus 112 ~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL 151 (502)
++.|+.+.-. .--.+-+|-.||.|-.++|
T Consensus 98 ~~~ql~EYq~-----------LlnvKl~Ld~EIatYRkLL 126 (129)
T 3tnu_B 98 MARLLREYQE-----------LMNTKLALDVEIATYRKLL 126 (129)
T ss_dssp HHHHHHHHHH-----------HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhH
Confidence 8888766211 1122456899999998887
No 65
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=20.84 E-value=3.1e+02 Score=24.57 Aligned_cols=34 Identities=12% Similarity=0.150 Sum_probs=14.1
Q ss_pred hHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHH
Q 010725 232 LEATISGLREEVAKKSSFIENLEKSLIEKDEKVA 265 (502)
Q Consensus 232 LEasis~lr~eva~kss~~e~l~ks~~eke~~i~ 265 (502)
|+.-+.+|..|+..|...+..|+.-...-...++
T Consensus 84 L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~ 117 (152)
T 4fla_A 84 LAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLS 117 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444433333333333
No 66
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.79 E-value=1.8e+02 Score=29.53 Aligned_cols=48 Identities=13% Similarity=0.094 Sum_probs=18.9
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHHHHHHHHH
Q 010725 267 IESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIK 314 (502)
Q Consensus 267 le~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd~L~~vi~ 314 (502)
|+.|+.++++++.+++.+++++.+...-+-+++--.......|.|-+.
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~ 55 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVM 55 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443333333333333333333333333
No 67
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=20.53 E-value=1.3e+02 Score=29.75 Aligned_cols=43 Identities=19% Similarity=0.226 Sum_probs=35.6
Q ss_pred cchhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 010725 451 ETEEDEIYNLAGALEN-------IVKASQLEIVELRHSVEELRYFLSFSN 493 (502)
Q Consensus 451 seeedEVySLAsalEn-------iMK~sqlEI~eLrhslEEsRse~~~Lq 493 (502)
.+|-.-|++|--.|+. -++.+..||+.|-|.|++.|++..+++
T Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 421 ATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566778888766664 478899999999999999999998876
No 68
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=20.29 E-value=1.6e+02 Score=25.55 Aligned_cols=38 Identities=18% Similarity=0.405 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHHHH-------HHhhhhh
Q 010725 252 NLEKSLIEKDEKVAEIESQGLELRQLVNEYE-------DKLKNLE 289 (502)
Q Consensus 252 ~l~ks~~eke~~i~ele~E~~~lKe~V~e~E-------~kl~~lE 289 (502)
++.+.++....+|.++..++.+|+..|..++ .|||+.|
T Consensus 8 al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIE 52 (106)
T 4e61_A 8 AIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIE 52 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!