BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010728
(502 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NKP|A Chain A, Crystal Structure Of Myc-Max Recognizing Dna
pdb|1NKP|D Chain D, Crystal Structure Of Myc-Max Recognizing Dna
Length = 88
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 358 HVEAERQRREKLNQRFYALRAVVPNISKMDKAS---LLGDAITYITDLQMKIRVLETEKD 414
H ERQRR +L + F+ALR +P + +KA +L A YI +Q + + L +E+D
Sbjct: 10 HNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEED 69
Query: 415 MSNNKQKQI 423
+ +++Q+
Sbjct: 70 LLRKRREQL 78
>pdb|1R05|A Chain A, Solution Structure Of Max B-Hlh-Lz
pdb|1R05|B Chain B, Solution Structure Of Max B-Hlh-Lz
Length = 87
Score = 37.0 bits (84), Expect = 0.026, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 357 NHVEAERQRREKLNQRFYALRAVVPNIS--KMDKASLLGDAITYITDLQMKIRVLETEKD 414
+H ER+RR+ + F++LR VP++ K +A +L A YI ++ K+ L+ + D
Sbjct: 7 HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKVHTLQQDID 66
>pdb|4ATI|A Chain A, Mitf:m-Box Complex
pdb|4ATI|B Chain B, Mitf:m-Box Complex
pdb|4ATK|A Chain A, Mitf:e-Box Complex
pdb|4ATK|B Chain B, Mitf:e-Box Complex
Length = 118
Score = 37.0 bits (84), Expect = 0.029, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 15/97 (15%)
Query: 349 ANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMD----KASLLGDAITYITDLQM 404
A R++ NH ER+RR +N R L ++P + D K ++L ++ YI LQ
Sbjct: 22 AKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQ- 80
Query: 405 KIRVLETEKDMSNNKQK--------QISVPEIDFQPR 433
R + KD+ N ++K + V E++ Q R
Sbjct: 81 --REQQRAKDLENRQKKLEHANRHLLLRVQELEMQAR 115
>pdb|1DVM|A Chain A, Active Form Of Human Pai-1
pdb|1DVM|B Chain B, Active Form Of Human Pai-1
pdb|1DVM|C Chain C, Active Form Of Human Pai-1
pdb|1DVM|D Chain D, Active Form Of Human Pai-1
pdb|3PB1|I Chain I, Crystal Structure Of A Michaelis Complex Between
Plasminogen Activator Inhibitor-1 And Urokinase-Type
Plasminogen Activator
Length = 379
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 6 WTKEEDKAMVESVLGTEACEFLIKSTANNVM---AELVTPPGDLGVHQRLCQVVEGSNWN 62
W K K M+ +LGT A + L + N + + TP D H+RL +GS
Sbjct: 139 WVKTHTKGMISHLLGTGAVQQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGS--T 196
Query: 63 YAIYWHASNLKSGGSALIWGDGHCRD 88
++ A K + DGH D
Sbjct: 197 VSVPMMAQTNKFNYTEFTTPDGHYYD 222
>pdb|3EOX|A Chain A, High Quality Structure Of Cleaved Pai-1-Stab
Length = 379
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 6 WTKEEDKAMVESVLGTEACEFLIKSTANNVM---AELVTPPGDLGVHQRLCQVVEGSNWN 62
W K K M+ +LGT A + L + N + + TP D H+RL +GS
Sbjct: 139 WVKTHTKGMISHLLGTGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGS--T 196
Query: 63 YAIYWHASNLKSGGSALIWGDGHCRD 88
++ A K + DGH D
Sbjct: 197 VSVPMMAQTNKFNYTEFTTPDGHYYD 222
>pdb|3CVM|A Chain A, High Resolution Structure Of A Stable Plasminogen
Activator Inhibitor Type-1 In Its Protease Cleaved Form
pdb|3CVM|B Chain B, High Resolution Structure Of A Stable Plasminogen
Activator Inhibitor Type-1 In Its Protease Cleaved Form
Length = 392
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 6 WTKEEDKAMVESVLGTEACEFLIKSTANNVM---AELVTPPGDLGVHQRLCQVVEGSNWN 62
W K K M+ +LGT A + L + N + + TP D H+RL +GS
Sbjct: 152 WVKTHTKGMISHLLGTGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGS--T 209
Query: 63 YAIYWHASNLKSGGSALIWGDGHCRD 88
++ A K + DGH D
Sbjct: 210 VSVPMMAQTNKFNYTEFTTPDGHYYD 235
>pdb|1DB2|A Chain A, Crystal Structure Of Native Plasminogen Activator
Inhibitor- 1
pdb|1DB2|B Chain B, Crystal Structure Of Native Plasminogen Activator
Inhibitor- 1
Length = 377
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 6 WTKEEDKAMVESVLGTEACEFLIKSTANNVM---AELVTPPGDLGVHQRLCQVVEGSNWN 62
W K K M+ +LGT A + L + N + + TP D H+RL +GS
Sbjct: 137 WVKTHTKGMISHLLGTGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGS--T 194
Query: 63 YAIYWHASNLKSGGSALIWGDGHCRD 88
++ A K + DGH D
Sbjct: 195 VSVPMMAQTNKFNYTEFTTPDGHYYD 220
>pdb|1B3K|A Chain A, Plasminogen Activator Inhibitor-1
pdb|1B3K|B Chain B, Plasminogen Activator Inhibitor-1
pdb|1B3K|C Chain C, Plasminogen Activator Inhibitor-1
pdb|1B3K|D Chain D, Plasminogen Activator Inhibitor-1
pdb|1OC0|A Chain A, Plasminogen Activator Inhibitor-1 Complex With Somatomedin
B Domain Of Vitronectin
Length = 379
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 6 WTKEEDKAMVESVLGTEACEFLIKSTANNVM---AELVTPPGDLGVHQRLCQVVEGSNWN 62
W K K M+ +LGT A + L + N + + TP D H+RL +GS
Sbjct: 139 WVKTHTKGMISHLLGTGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGS--T 196
Query: 63 YAIYWHASNLKSGGSALIWGDGHCRD 88
++ A K + DGH D
Sbjct: 197 VSVPMMAQTNKFNYTEFTTPDGHYYD 222
>pdb|3UT3|A Chain A, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|B Chain B, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|C Chain C, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|D Chain D, A Novel Pai-i Inhibitor And Its Structural Mechanism
Length = 375
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 6 WTKEEDKAMVESVLGTEACEFLIKSTANNVM---AELVTPPGDLGVHQRLCQVVEGSNWN 62
W K K M+ +LGT A + L + N + + TP D H+RL +GS
Sbjct: 135 WVKTHTKGMISHLLGTGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGS--T 192
Query: 63 YAIYWHASNLKSGGSALIWGDGHCRD 88
++ A K + DGH D
Sbjct: 193 VSVPMMAQTNKFNYTEFTTPDGHYYD 218
>pdb|3Q02|A Chain A, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation.
pdb|3Q02|B Chain B, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation.
pdb|3Q03|A Chain A, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation.
pdb|3Q03|B Chain B, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation
Length = 379
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 6 WTKEEDKAMVESVLGTEACEFLIKSTANNVM---AELVTPPGDLGVHQRLCQVVEGSNWN 62
W K K M+ ++LG A + L + N + + TP D H+RL +GS
Sbjct: 139 WVKTHTKGMISNLLGKGAVDQLTRLVLVNALYFNGQFKTPFPDSSTHRRLFHKSDGS--T 196
Query: 63 YAIYWHASNLKSGGSALIWGDGHCRD 88
++ A K + DGH D
Sbjct: 197 VSVPMMAQTNKFNYTEFTTPDGHYYD 222
>pdb|1NKP|B Chain B, Crystal Structure Of Myc-Max Recognizing Dna
pdb|1NKP|E Chain E, Crystal Structure Of Myc-Max Recognizing Dna
Length = 83
Score = 32.3 bits (72), Expect = 0.67, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 357 NHVEAERQRREKLNQRFYALRAVVPNIS--KMDKASLLGDAITYITDLQMK 405
+H ER+RR+ + F++LR VP++ K +A +L A YI ++ K
Sbjct: 5 HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRK 55
>pdb|1NLW|B Chain B, Crystal Structure Of Mad-Max Recognizing Dna
pdb|1NLW|E Chain E, Crystal Structure Of Mad-Max Recognizing Dna
Length = 76
Score = 31.6 bits (70), Expect = 0.95, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 357 NHVEAERQRREKLNQRFYALRAVVPNIS--KMDKASLLGDAITYITDLQMK 405
+H ER+RR+ + F++LR VP++ K +A +L A YI ++ K
Sbjct: 4 HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRK 54
>pdb|1AN2|A Chain A, Recognition By Max Of Its Cognate Dna Through A Dimeric
BHLHZ DOMAIN
Length = 86
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 357 NHVEAERQRREKLNQRFYALRAVVPNIS--KMDKASLLGDAITYITDLQMK 405
+H ER+RR+ + F++LR VP++ K +A +L A YI ++ K
Sbjct: 6 HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRK 56
>pdb|1HLO|A Chain A, The Crystal Structure Of An Intact Human Max-Dna Complex:
New Insights Into Mechanisms Of Transcriptional Control
pdb|1HLO|B Chain B, The Crystal Structure Of An Intact Human Max-Dna Complex:
New Insights Into Mechanisms Of Transcriptional Control
Length = 80
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 357 NHVEAERQRREKLNQRFYALRAVVPNIS--KMDKASLLGDAITYITDLQMK 405
+H ER+RR+ + F++LR VP++ K +A +L A YI ++ K
Sbjct: 15 HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRK 65
>pdb|1A7C|A Chain A, Human Plasminogen Activator Inhibitor Type-1 In Complex
With A Pentapeptide
Length = 379
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 6 WTKEEDKAMVESVLGTEACEFLIKSTANNVM---AELVTPPGDLGVHQRLCQVVEGSNWN 62
W K K M+ ++LG A + L + N + + TP D H+RL +GS
Sbjct: 139 WVKTHTKGMISNLLGKGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGS--T 196
Query: 63 YAIYWHASNLKSGGSALIWGDGHCRD 88
++ A K + DGH D
Sbjct: 197 VSVPMMAQTNKFNYTEFTTPDGHYYD 222
>pdb|1DVN|A Chain A, Latent Form Of Plasminogen Activator Inhibitor-1 (Pai-1)
pdb|1LJ5|A Chain A, 1.8a Resolution Structure Of Latent Plasminogen Activator
Inhibitor-1(Pai-1)
Length = 379
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 6 WTKEEDKAMVESVLGTEACEFLIKSTANNVM---AELVTPPGDLGVHQRLCQVVEGSNWN 62
W K K M+ ++LG A + L + N + + TP D H+RL +GS
Sbjct: 139 WVKTHTKGMISNLLGKGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGS--T 196
Query: 63 YAIYWHASNLKSGGSALIWGDGHCRD 88
++ A K + DGH D
Sbjct: 197 VSVPMMAQTNKFNYTEFTTPDGHYYD 222
>pdb|9PAI|A Chain A, Cleaved Substrate Variant Of Plasminogen Activator
Inhibitor-1
Length = 346
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 6 WTKEEDKAMVESVLGTEACEFLIKSTANNVM---AELVTPPGDLGVHQRLCQVVEGSNWN 62
W K K M+ ++LG A + L + N + + TP D H+RL +GS
Sbjct: 139 WVKTHTKGMISNLLGKGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGS--T 196
Query: 63 YAIYWHASNLKSGGSALIWGDGHCRD 88
++ A K + DGH D
Sbjct: 197 VSVPMMAQTNKFNYTEFTTPDGHYYD 222
>pdb|4AQH|A Chain A, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
pdb|4AQH|B Chain B, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
pdb|4AQH|C Chain C, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
Length = 383
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 6 WTKEEDKAMVESVLGTEACEFLIKSTANNVM---AELVTPPGDLGVHQRLCQVVEGSNWN 62
W K K M+ ++LG A + L + N + + TP D H+RL +GS
Sbjct: 143 WVKTHTKGMISNLLGKGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGS--T 200
Query: 63 YAIYWHASNLKSGGSALIWGDGHCRD 88
++ A K + DGH D
Sbjct: 201 VSVPMMAQTNKFNYTEFTTPDGHYYD 226
>pdb|1C5G|A Chain A, Plasminogen Activator Inhibitor-1
Length = 402
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 6 WTKEEDKAMVESVLGTEACEFLIKSTANNVM---AELVTPPGDLGVHQRLCQVVEGSNWN 62
W K K M+ ++LG A + L + N + + TP D H+RL +GS
Sbjct: 162 WVKTHTKGMISNLLGKGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGS--T 219
Query: 63 YAIYWHASNLKSGGSALIWGDGHCRD 88
++ A K + DGH D
Sbjct: 220 VSVPMMAQTNKFNYTEFTTPDGHYYD 245
>pdb|4F3L|B Chain B, Crystal Structure Of The Heterodimeric Clock:bmal1
Transcriptional Activator Complex
Length = 387
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 350 NGREEPLNHVEAERQRREKLNQRFYALRAVVPNIS----KMDKASLLGDAITYITDLQ 403
N RE H + E++RR+K+N L ++VP + K+DK ++L A+ ++ L+
Sbjct: 12 NAREA---HSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR 66
>pdb|2DF4|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2F2A|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
pdb|2G5H|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|B Chain B, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|B Chain B, The High Resolution Structure Of Gatcab
Length = 483
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 209 VELGSVKLIPEEQNVVEMVKTVFEGSSSVQTKVFPKIFGHELSLGGSKSQSISINFSPKV 268
VEL KL PE N+ M+K + +G+ S +K+ K+F + GG+ Q + N ++
Sbjct: 357 VELLDTKLTPE--NLAGMIKLIEDGTMS--SKIAKKVFPELAAKGGNAKQIMEDNGLVQI 412
Query: 269 EDE---LNFASDSYE 280
DE L F +++ +
Sbjct: 413 SDEATLLKFVNEALD 427
>pdb|1AN4|A Chain A, Structure And Function Of The BHLHZ DOMAIN OF USF
pdb|1AN4|B Chain B, Structure And Function Of The BHLHZ DOMAIN OF USF
Length = 65
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 358 HVEAERQRREKLNQRFYALRAVVPN------ISKMDKASLLGDAITYITDLQ 403
H E ER+RR+K+N L ++P+ S K +L A YI +L+
Sbjct: 9 HNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELR 60
>pdb|4H10|A Chain A, Intermolecular Recognition Revealed By The Complex
Structure Of Human Clock-bmal1 Basic Helix-loop-helix
Domains With E-box Dna
Length = 73
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 350 NGREEPLNHVEAERQRREKLNQRFYALRAVVPNIS----KMDKASLLGDAITYITDLQ 403
N RE H + E++RR+K+N L ++VP + K+DK ++L A+ ++ L+
Sbjct: 8 NAREA---HSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,114,896
Number of Sequences: 62578
Number of extensions: 488513
Number of successful extensions: 1040
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1037
Number of HSP's gapped (non-prelim): 26
length of query: 502
length of database: 14,973,337
effective HSP length: 103
effective length of query: 399
effective length of database: 8,527,803
effective search space: 3402593397
effective search space used: 3402593397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)