Query 010728
Match_columns 502
No_of_seqs 294 out of 1300
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 13:00:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010728.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010728hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 1.2E-15 4.2E-20 126.4 7.0 63 355-417 7-70 (82)
2 1nkp_B MAX protein, MYC proto- 99.5 2.5E-14 8.6E-19 118.6 6.0 63 355-417 3-67 (83)
3 1hlo_A Protein (transcription 99.5 3.8E-14 1.3E-18 116.7 6.6 63 355-417 13-77 (80)
4 1nkp_A C-MYC, MYC proto-oncoge 99.5 7E-14 2.4E-18 117.3 6.9 63 355-417 7-72 (88)
5 4h10_B Circadian locomoter out 99.5 6E-14 2E-18 112.9 6.0 56 355-410 9-65 (71)
6 4ati_A MITF, microphthalmia-as 99.4 1.2E-13 4.2E-18 121.8 7.2 59 356-414 29-91 (118)
7 1an4_A Protein (upstream stimu 99.4 4E-14 1.4E-18 112.1 3.1 52 355-406 6-63 (65)
8 1a0a_A BHLH, protein (phosphat 99.4 4.7E-14 1.6E-18 111.3 1.7 51 356-406 4-61 (63)
9 1nlw_A MAD protein, MAX dimeri 99.4 5.6E-13 1.9E-17 109.9 7.8 62 356-417 3-67 (80)
10 4h10_A ARYL hydrocarbon recept 99.4 1.8E-13 6.2E-18 110.9 3.0 50 355-404 10-63 (73)
11 3u5v_A Protein MAX, transcript 99.3 1.4E-12 4.8E-17 106.5 3.9 57 354-410 5-65 (76)
12 2ql2_B Neurod1, neurogenic dif 99.0 3.7E-10 1.3E-14 88.1 4.8 53 355-407 3-58 (60)
13 1mdy_A Protein (MYOD BHLH doma 99.0 2.8E-10 9.5E-15 90.9 3.8 53 354-406 12-66 (68)
14 4f3l_A Mclock, circadian locom 98.8 2.6E-09 9E-14 109.7 5.6 51 355-405 13-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.6 2E-08 6.8E-13 104.4 5.1 51 355-405 14-68 (387)
16 2lfh_A DNA-binding protein inh 98.5 2.5E-08 8.5E-13 79.1 2.7 45 360-404 20-67 (68)
17 4ath_A MITF, microphthalmia-as 98.2 2.7E-06 9.2E-11 70.0 6.5 48 366-413 4-55 (83)
18 4aya_A DNA-binding protein inh 97.7 4.3E-05 1.5E-09 64.7 6.1 47 362-408 33-82 (97)
19 1zpv_A ACT domain protein; str 96.2 0.042 1.4E-06 44.3 10.7 63 436-498 5-68 (91)
20 2nyi_A Unknown protein; protei 95.4 0.09 3.1E-06 49.1 10.4 65 436-500 5-69 (195)
21 1f5m_A GAF; CGMP binding, sign 95.1 0.01 3.4E-07 54.9 3.0 72 153-231 93-173 (180)
22 1u8s_A Glycine cleavage system 94.8 0.094 3.2E-06 48.5 8.8 63 436-498 6-68 (192)
23 2ko1_A CTR148A, GTP pyrophosph 94.5 0.28 9.7E-06 38.8 9.9 51 436-486 5-55 (88)
24 3k2n_A Sigma-54-dependent tran 94.4 0.56 1.9E-05 40.6 12.5 126 44-229 21-158 (177)
25 3trc_A Phosphoenolpyruvate-pro 93.9 0.061 2.1E-06 46.3 5.1 123 44-229 23-153 (171)
26 3ci6_A Phosphoenolpyruvate-pro 93.0 0.097 3.3E-06 44.4 4.7 74 153-229 74-155 (171)
27 3dba_A CONE CGMP-specific 3',5 93.0 0.043 1.5E-06 49.6 2.6 76 153-231 82-167 (180)
28 1vhm_A Protein YEBR; structura 92.9 0.05 1.7E-06 51.2 3.0 73 153-232 88-168 (195)
29 2nyi_A Unknown protein; protei 92.6 0.32 1.1E-05 45.4 8.0 64 435-498 92-161 (195)
30 2vjw_A GAF-B, GAF family prote 92.6 0.076 2.6E-06 46.9 3.6 48 153-214 55-107 (149)
31 2e4s_A CAMP and CAMP-inhibited 92.5 0.17 6E-06 44.4 5.8 77 152-231 84-170 (189)
32 3e0y_A Conserved domain protei 92.1 0.098 3.3E-06 45.3 3.7 76 153-231 77-160 (181)
33 2qyb_A Membrane protein, putat 91.9 0.78 2.7E-05 40.1 9.4 73 156-231 70-152 (181)
34 3mmh_A FRMSR, methionine-R-sul 91.7 0.06 2E-06 49.4 1.8 72 153-231 77-156 (167)
35 3oov_A Methyl-accepting chemot 91.2 0.36 1.2E-05 41.3 6.2 128 44-230 17-155 (169)
36 1u8s_A Glycine cleavage system 90.8 1.2 4.1E-05 40.9 9.8 65 435-499 92-165 (192)
37 3hcy_A Putative two-component 90.2 0.51 1.7E-05 40.1 6.3 70 156-227 52-129 (151)
38 3ksh_A Putative uncharacterize 89.8 0.15 5.2E-06 46.5 2.7 72 153-231 76-155 (160)
39 3rfb_A Putative uncharacterize 89.5 0.19 6.6E-06 46.4 3.1 74 153-233 77-158 (171)
40 2w3g_A DOSS, two component sen 89.3 0.26 8.8E-06 41.3 3.6 74 153-230 56-138 (153)
41 3p96_A Phosphoserine phosphata 87.1 1.8 6E-05 44.4 8.9 64 435-498 11-76 (415)
42 3obi_A Formyltetrahydrofolate 84.4 4.5 0.00016 40.2 10.0 63 435-497 5-71 (288)
43 2zmf_A CAMP and CAMP-inhibited 82.8 0.75 2.6E-05 40.0 3.2 76 153-230 85-169 (189)
44 3n0v_A Formyltetrahydrofolate 82.5 6.1 0.00021 39.2 10.1 63 435-497 7-72 (286)
45 3o1l_A Formyltetrahydrofolate 82.3 5.5 0.00019 39.9 9.7 63 435-497 21-87 (302)
46 1ykd_A Adenylate cyclase; GAF 82.2 2.3 8E-05 42.4 7.0 62 153-215 262-331 (398)
47 3lou_A Formyltetrahydrofolate 82.0 5.8 0.0002 39.5 9.7 63 435-497 9-77 (292)
48 1mc0_A 3',5'-cyclic nucleotide 81.2 1.2 4E-05 43.9 4.3 76 152-231 74-160 (368)
49 3nrb_A Formyltetrahydrofolate 80.8 6.4 0.00022 39.0 9.5 63 435-497 6-70 (287)
50 3ibj_A CGMP-dependent 3',5'-cy 79.4 1.1 3.7E-05 49.3 3.6 77 153-232 245-332 (691)
51 1mc0_A 3',5'-cyclic nucleotide 79.0 1.9 6.4E-05 42.4 4.9 76 152-231 244-331 (368)
52 2jhe_A Transcription regulator 76.5 8.5 0.00029 33.7 8.1 35 438-472 2-36 (190)
53 2f1f_A Acetolactate synthase i 76.4 4.6 0.00016 36.9 6.4 46 438-483 5-52 (164)
54 2fgc_A Acetolactate synthase, 73.4 16 0.00055 34.3 9.4 61 437-501 30-92 (193)
55 3p01_A Two-component response 71.5 1.6 5.3E-05 38.7 1.9 69 159-229 95-171 (184)
56 2pc6_A Probable acetolactate s 70.0 6.7 0.00023 35.9 5.8 46 438-483 6-53 (165)
57 2k2n_A Sensor protein, SYB-CPH 69.9 7 0.00024 34.1 5.9 70 159-229 78-159 (172)
58 1y7p_A Hypothetical protein AF 68.9 10 0.00036 36.4 7.1 61 436-497 4-68 (223)
59 1ykd_A Adenylate cyclase; GAF 67.0 1.6 5.5E-05 43.6 1.1 61 153-214 75-143 (398)
60 3o5y_A Sensor protein; GAF dom 66.4 7.9 0.00027 34.5 5.5 76 153-231 54-137 (165)
61 2lb5_A Sensor histidine kinase 62.6 11 0.00038 33.7 5.8 72 159-231 108-191 (208)
62 3bjc_A CGMP-specific 3',5'-cyc 59.7 1.9 6.5E-05 49.0 0.0 78 152-232 224-314 (878)
63 2wt7_A Proto-oncogene protein 56.7 23 0.0008 26.9 5.8 43 362-417 1-43 (63)
64 3bjc_A CGMP-specific 3',5'-cyc 53.7 2.7 9.4E-05 47.7 0.0 77 152-231 406-502 (878)
65 3ibj_A CGMP-dependent 3',5'-cy 51.8 21 0.00073 38.9 6.7 71 153-228 76-157 (691)
66 2oqq_A Transcription factor HY 37.3 25 0.00086 25.0 2.8 21 397-417 3-23 (42)
67 3cit_A Sensor histidine kinase 37.0 93 0.0032 28.2 7.4 95 112-231 30-141 (160)
68 2f06_A Conserved hypothetical 36.5 1.7E+02 0.0057 24.8 8.9 46 439-486 75-120 (144)
69 2l5g_A GPS2 protein, G protein 32.8 53 0.0018 22.8 3.8 31 386-416 4-34 (38)
70 2f06_A Conserved hypothetical 31.9 1.7E+02 0.006 24.7 8.2 37 438-474 8-44 (144)
71 2re1_A Aspartokinase, alpha an 31.8 81 0.0028 27.9 6.2 52 431-482 20-73 (167)
72 1zme_C Proline utilization tra 31.2 33 0.0011 25.7 3.0 21 397-417 44-64 (70)
73 3he4_B Synzip5; heterodimeric 31.1 59 0.002 22.7 3.8 26 392-417 5-30 (46)
74 2er8_A Regulatory protein Leu3 31.0 32 0.0011 26.1 2.9 21 397-417 49-69 (72)
75 2rrl_A FLIK, flagellar HOOK-le 29.8 1.2E+02 0.0041 27.7 7.0 76 397-472 69-153 (169)
76 1dh3_A Transcription factor CR 28.2 44 0.0015 24.8 3.1 21 397-417 22-42 (55)
77 3ld7_A LIN0431 protein; DUF131 27.0 26 0.00087 29.4 1.8 44 159-204 39-82 (101)
78 2kpp_A LIN0431 protein; soluti 25.4 33 0.0011 29.5 2.2 42 162-205 42-83 (114)
79 1gd2_E Transcription factor PA 25.0 52 0.0018 25.8 3.1 20 396-415 28-47 (70)
80 3fx7_A Putative uncharacterize 24.5 1.2E+02 0.0041 25.2 5.4 42 364-413 45-86 (94)
81 4esn_A Hypothetical protein; p 22.3 18 0.00063 30.6 -0.0 46 163-211 46-91 (104)
82 1uii_A Geminin; human, DNA rep 21.5 1.4E+02 0.005 24.2 5.1 25 392-416 41-65 (83)
83 2dtj_A Aspartokinase; protein- 21.4 1.7E+02 0.006 26.0 6.5 53 432-484 11-67 (178)
84 2qmx_A Prephenate dehydratase; 21.1 2.6E+02 0.0089 27.4 8.1 63 435-497 199-263 (283)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.59 E-value=1.2e-15 Score=126.37 Aligned_cols=63 Identities=27% Similarity=0.372 Sum_probs=59.7
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhcCCCC-CCCChhcHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010728 355 PLNHVEAERQRREKLNQRFYALRAVVPNI-SKMDKASLLGDAITYITDLQMKIRVLETEKDMSN 417 (502)
Q Consensus 355 ~~~H~~~ER~RR~kln~~f~~LrslvP~~-~K~dKasiL~~aI~YIk~Lq~~v~~Le~~~~~l~ 417 (502)
+.+|+.+||+||++||+.|..|+++||++ .|+||++||.+||+||++|+.+++.|+.+.+.+.
T Consensus 7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~ 70 (82)
T 1am9_A 7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR 70 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999987 8999999999999999999999999999988765
No 2
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.48 E-value=2.5e-14 Score=118.55 Aligned_cols=63 Identities=29% Similarity=0.425 Sum_probs=58.5
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhcCCC--CCCCChhcHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010728 355 PLNHVEAERQRREKLNQRFYALRAVVPN--ISKMDKASLLGDAITYITDLQMKIRVLETEKDMSN 417 (502)
Q Consensus 355 ~~~H~~~ER~RR~kln~~f~~LrslvP~--~~K~dKasiL~~aI~YIk~Lq~~v~~Le~~~~~l~ 417 (502)
+.+|+.+||+||++||+.|..|+++||. ..|++|++||..||+||+.|+.+++.|+.+++.+.
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~ 67 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999999997 48999999999999999999999999998887765
No 3
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.48 E-value=3.8e-14 Score=116.73 Aligned_cols=63 Identities=29% Similarity=0.464 Sum_probs=59.2
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhcCCCC--CCCChhcHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010728 355 PLNHVEAERQRREKLNQRFYALRAVVPNI--SKMDKASLLGDAITYITDLQMKIRVLETEKDMSN 417 (502)
Q Consensus 355 ~~~H~~~ER~RR~kln~~f~~LrslvP~~--~K~dKasiL~~aI~YIk~Lq~~v~~Le~~~~~l~ 417 (502)
+.+|+.+||+||.+||+.|..|+++||.. .|++|++||..||+||+.|++++++|+.+++.+.
T Consensus 13 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 13 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999975 6999999999999999999999999999988764
No 4
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.46 E-value=7e-14 Score=117.29 Aligned_cols=63 Identities=35% Similarity=0.539 Sum_probs=57.2
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhcCCCC---CCCChhcHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010728 355 PLNHVEAERQRREKLNQRFYALRAVVPNI---SKMDKASLLGDAITYITDLQMKIRVLETEKDMSN 417 (502)
Q Consensus 355 ~~~H~~~ER~RR~kln~~f~~LrslvP~~---~K~dKasiL~~aI~YIk~Lq~~v~~Le~~~~~l~ 417 (502)
+.+|+.+||+||++||+.|..||++||+. .|++|++||.+||+||++|+.+.+.++.+++.+.
T Consensus 7 R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~ 72 (88)
T 1nkp_A 7 RRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLR 72 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999975 6999999999999999999999998887766554
No 5
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.46 E-value=6e-14 Score=112.91 Aligned_cols=56 Identities=25% Similarity=0.437 Sum_probs=52.0
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhcCCCC-CCCChhcHHHHHHHHHHHHHHHHHHHH
Q 010728 355 PLNHVEAERQRREKLNQRFYALRAVVPNI-SKMDKASLLGDAITYITDLQMKIRVLE 410 (502)
Q Consensus 355 ~~~H~~~ER~RR~kln~~f~~LrslvP~~-~K~dKasiL~~aI~YIk~Lq~~v~~Le 410 (502)
+.+|+++||+||++||+.|..|++|||.. .|+||++||..||+||+.||.++.-|+
T Consensus 9 R~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 9 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 46899999999999999999999999964 699999999999999999999988765
No 6
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.44 E-value=1.2e-13 Score=121.81 Aligned_cols=59 Identities=27% Similarity=0.444 Sum_probs=52.7
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhcCCCCC----CCChhcHHHHHHHHHHHHHHHHHHHHHHHh
Q 010728 356 LNHVEAERQRREKLNQRFYALRAVVPNIS----KMDKASLLGDAITYITDLQMKIRVLETEKD 414 (502)
Q Consensus 356 ~~H~~~ER~RR~kln~~f~~LrslvP~~~----K~dKasiL~~aI~YIk~Lq~~v~~Le~~~~ 414 (502)
.+|+.+||+||++||++|..|++|||++. |++|++||.+||+||++||.+++.|+....
T Consensus 29 ~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~ 91 (118)
T 4ati_A 29 DNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 91 (118)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999763 778999999999999999999999987643
No 7
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.43 E-value=4e-14 Score=112.05 Aligned_cols=52 Identities=33% Similarity=0.536 Sum_probs=48.0
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhcCCCCC------CCChhcHHHHHHHHHHHHHHHH
Q 010728 355 PLNHVEAERQRREKLNQRFYALRAVVPNIS------KMDKASLLGDAITYITDLQMKI 406 (502)
Q Consensus 355 ~~~H~~~ER~RR~kln~~f~~LrslvP~~~------K~dKasiL~~aI~YIk~Lq~~v 406 (502)
..+|+.+||+||++||+.|..|++|||.+. |++|++||.+||+||++||++.
T Consensus 6 r~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 458999999999999999999999999764 7899999999999999999764
No 8
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.40 E-value=4.7e-14 Score=111.25 Aligned_cols=51 Identities=29% Similarity=0.386 Sum_probs=46.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhcCCCC-------CCCChhcHHHHHHHHHHHHHHHH
Q 010728 356 LNHVEAERQRREKLNQRFYALRAVVPNI-------SKMDKASLLGDAITYITDLQMKI 406 (502)
Q Consensus 356 ~~H~~~ER~RR~kln~~f~~LrslvP~~-------~K~dKasiL~~aI~YIk~Lq~~v 406 (502)
.+|+.+||+||++||..|..|++|||++ +|.+||+||+.||+||++||+++
T Consensus 4 ~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 4 ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp TGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999953 56779999999999999999765
No 9
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.39 E-value=5.6e-13 Score=109.88 Aligned_cols=62 Identities=29% Similarity=0.270 Sum_probs=57.5
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhcCCCC---CCCChhcHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010728 356 LNHVEAERQRREKLNQRFYALRAVVPNI---SKMDKASLLGDAITYITDLQMKIRVLETEKDMSN 417 (502)
Q Consensus 356 ~~H~~~ER~RR~kln~~f~~LrslvP~~---~K~dKasiL~~aI~YIk~Lq~~v~~Le~~~~~l~ 417 (502)
.+|+..||+||..||+.|..||++||.. .|.+|++||..|++||+.|+.+.+.|+.+++.+.
T Consensus 3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~ 67 (80)
T 1nlw_A 3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQ 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999954 7889999999999999999999999998887664
No 10
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.36 E-value=1.8e-13 Score=110.86 Aligned_cols=50 Identities=30% Similarity=0.449 Sum_probs=46.6
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhcCCCC----CCCChhcHHHHHHHHHHHHHH
Q 010728 355 PLNHVEAERQRREKLNQRFYALRAVVPNI----SKMDKASLLGDAITYITDLQM 404 (502)
Q Consensus 355 ~~~H~~~ER~RR~kln~~f~~LrslvP~~----~K~dKasiL~~aI~YIk~Lq~ 404 (502)
+.+|+.+||+||++||+.|..|++|||.+ .|+||++||..||+||+.|+.
T Consensus 10 R~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 10 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 35899999999999999999999999965 799999999999999999974
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.28 E-value=1.4e-12 Score=106.45 Aligned_cols=57 Identities=26% Similarity=0.371 Sum_probs=48.8
Q ss_pred CCccccHHHHHHHHHHHHHHHHHhhcCCC---CCCC-ChhcHHHHHHHHHHHHHHHHHHHH
Q 010728 354 EPLNHVEAERQRREKLNQRFYALRAVVPN---ISKM-DKASLLGDAITYITDLQMKIRVLE 410 (502)
Q Consensus 354 ~~~~H~~~ER~RR~kln~~f~~LrslvP~---~~K~-dKasiL~~aI~YIk~Lq~~v~~Le 410 (502)
.+.+|+..||+||++||+.|..||.+||+ ..|. .|++||..||+||+.|++++++++
T Consensus 5 rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 5 KRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34689999999999999999999999995 3555 688999999999999999999876
No 12
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.98 E-value=3.7e-10 Score=88.11 Aligned_cols=53 Identities=34% Similarity=0.378 Sum_probs=48.1
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhcCCCC---CCCChhcHHHHHHHHHHHHHHHHH
Q 010728 355 PLNHVEAERQRREKLNQRFYALRAVVPNI---SKMDKASLLGDAITYITDLQMKIR 407 (502)
Q Consensus 355 ~~~H~~~ER~RR~kln~~f~~LrslvP~~---~K~dKasiL~~aI~YIk~Lq~~v~ 407 (502)
+..|+..||+|+..||+.|..||.+||.. .|.+|..+|..||+||..|++.++
T Consensus 3 R~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 3 RMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 35789999999999999999999999964 589999999999999999998764
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.96 E-value=2.8e-10 Score=90.93 Aligned_cols=53 Identities=28% Similarity=0.415 Sum_probs=48.5
Q ss_pred CCccccHHHHHHHHHHHHHHHHHhhcCCCC--CCCChhcHHHHHHHHHHHHHHHH
Q 010728 354 EPLNHVEAERQRREKLNQRFYALRAVVPNI--SKMDKASLLGDAITYITDLQMKI 406 (502)
Q Consensus 354 ~~~~H~~~ER~RR~kln~~f~~LrslvP~~--~K~dKasiL~~aI~YIk~Lq~~v 406 (502)
.+..|+..||+|+..||+.|..||.+||.. .|++|+.||..||+||..|++.+
T Consensus 12 rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 12 RRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999963 78999999999999999999765
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.81 E-value=2.6e-09 Score=109.71 Aligned_cols=51 Identities=25% Similarity=0.505 Sum_probs=42.9
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhcCC-CCCCCChhcHHHHHHHHHHHHHHH
Q 010728 355 PLNHVEAERQRREKLNQRFYALRAVVP-NISKMDKASLLGDAITYITDLQMK 405 (502)
Q Consensus 355 ~~~H~~~ER~RR~kln~~f~~LrslvP-~~~K~dKasiL~~aI~YIk~Lq~~ 405 (502)
+.+|+.+||+||++||..|..|++||| +..|+||++||..||.||+.|+..
T Consensus 13 ~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 13 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 357999999999999999999999999 678999999999999999999864
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.62 E-value=2e-08 Score=104.36 Aligned_cols=51 Identities=29% Similarity=0.415 Sum_probs=47.6
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhcCC----CCCCCChhcHHHHHHHHHHHHHHH
Q 010728 355 PLNHVEAERQRREKLNQRFYALRAVVP----NISKMDKASLLGDAITYITDLQMK 405 (502)
Q Consensus 355 ~~~H~~~ER~RR~kln~~f~~LrslvP----~~~K~dKasiL~~aI~YIk~Lq~~ 405 (502)
+.+|+.+||+||+|||+.|..|++||| ...|+||++||..||.|||.|+..
T Consensus 14 ~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 14 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred cccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 358999999999999999999999999 678999999999999999999853
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.55 E-value=2.5e-08 Score=79.11 Aligned_cols=45 Identities=29% Similarity=0.551 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCC---CCCChhcHHHHHHHHHHHHHH
Q 010728 360 EAERQRREKLNQRFYALRAVVPNI---SKMDKASLLGDAITYITDLQM 404 (502)
Q Consensus 360 ~~ER~RR~kln~~f~~LrslvP~~---~K~dKasiL~~aI~YIk~Lq~ 404 (502)
..||+|+..||+.|..||.+||.. .|++|..+|.-||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 348999999999999999999964 689999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.18 E-value=2.7e-06 Score=70.03 Aligned_cols=48 Identities=23% Similarity=0.414 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhhcCCCC----CCCChhcHHHHHHHHHHHHHHHHHHHHHHH
Q 010728 366 REKLNQRFYALRAVVPNI----SKMDKASLLGDAITYITDLQMKIRVLETEK 413 (502)
Q Consensus 366 R~kln~~f~~LrslvP~~----~K~dKasiL~~aI~YIk~Lq~~v~~Le~~~ 413 (502)
|..||+++..|..|||.+ .|..|++||..|++||+.||+.++.+..+.
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e 55 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 55 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999954 578999999999999999998777776544
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.73 E-value=4.3e-05 Score=64.69 Aligned_cols=47 Identities=28% Similarity=0.436 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCC---CCCCChhcHHHHHHHHHHHHHHHHHH
Q 010728 362 ERQRREKLNQRFYALRAVVPN---ISKMDKASLLGDAITYITDLQMKIRV 408 (502)
Q Consensus 362 ER~RR~kln~~f~~LrslvP~---~~K~dKasiL~~aI~YIk~Lq~~v~~ 408 (502)
||.|=..||+.|..||.+||. ..|..|.-+|.-||+||..|+.-+++
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 678888999999999999995 36899999999999999999987764
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=96.23 E-value=0.042 Score=44.33 Aligned_cols=63 Identities=11% Similarity=0.106 Sum_probs=52.9
Q ss_pred ceEEEEEccCCCChHHHHHHHHHcCCCeEEEEEEEecCCEEEEEEEEEeCC-CChHHHHHHHHH
Q 010728 436 DAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTEDKVIHTFSIQTQS-GASEQLKEKLLA 498 (502)
Q Consensus 436 ~~~I~I~c~~~~~~l~~im~aL~el~L~V~~a~~s~~~~~v~~~~~vk~~~-g~~~~l~e~L~~ 498 (502)
.+.|.|.|++++|++.+|...|.+.|..+.+++.....+.+...+.+.+++ ...+.+.++|.+
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~~ 68 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEA 68 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHH
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCCCCHHHHHHHHHH
Confidence 467999999999999999999999999999999988778888888888876 244566666654
No 20
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=95.35 E-value=0.09 Score=49.15 Aligned_cols=65 Identities=12% Similarity=0.053 Sum_probs=51.3
Q ss_pred ceEEEEEccCCCChHHHHHHHHHcCCCeEEEEEEEecCCEEEEEEEEEeCCCChHHHHHHHHHHh
Q 010728 436 DAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTEDKVIHTFSIQTQSGASEQLKEKLLAAL 500 (502)
Q Consensus 436 ~~~I~I~c~~~~~~l~~im~aL~el~L~V~~a~~s~~~~~v~~~~~vk~~~g~~~~l~e~L~~aL 500 (502)
.+.|.|.|+.++|++.+|...|.++|+.|+.++..+..+.+...+.+..+........++|+++|
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~~~~~~~~~~l~~~L 69 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKDGKLIQSALESAL 69 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSSSSHHHHHHHHHHS
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecCccchhHHHHHHHHH
Confidence 46799999999999999999999999999999999888887777777765422112344555554
No 21
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=95.11 E-value=0.01 Score=54.94 Aligned_cols=72 Identities=14% Similarity=0.216 Sum_probs=54.8
Q ss_pred eeCCCCCCCcceeecCCCceEeeCCCCCCCCcchhhhhhhhcCCceEEEeecCC------ceeeeccccc---ccCCHHH
Q 010728 153 NFRCDSAYGPGHAYKSGRSIWTSGIVSCSDHYESRSFLAMSAGFQTVVFVPAKS------GVVELGSVKL---IPEEQNV 223 (502)
Q Consensus 153 sF~~G~~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~lA~saGIqTvvcIPv~~------GVvELGSt~~---I~Ed~~l 223 (502)
.|+.| +|+.|+|+.+|+++.+.+...-+.. .+...+++.++|||+.. |||++.+.+. -.+|..+
T Consensus 93 ~i~~g-~Gi~G~aa~~g~~v~v~Dv~~dp~~------~~~~~~~~S~l~vPi~~~~g~viGVL~l~s~~~~~F~~~d~~~ 165 (180)
T 1f5m_A 93 MIQFG-KGVCGTAASTKETQIVPDVNKYPGH------IACDGETKSEIVVPIISNDGKTLGVIDIDCLDYEGFDHVDKEF 165 (180)
T ss_dssp EEETT-SHHHHHHHHHTSCEEESCGGGSTTC------CCSSTTCCEEEEEEEECTTSCEEEEEEEEESSTTCCCHHHHHH
T ss_pred eecCC-CcchhhhhhcCCEEEeCCcccCccc------cccCcccceEEEEEEEcCCCeEEEEEEeccCCCCCcCHHHHHH
Confidence 57889 9999999999999999887654322 14457899999999965 9999999764 2346666
Q ss_pred HHHHHHHh
Q 010728 224 VEMVKTVF 231 (502)
Q Consensus 224 v~~vk~~F 231 (502)
++.+-...
T Consensus 166 L~~la~~~ 173 (180)
T 1f5m_A 166 LEKLAKLI 173 (180)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665543
No 22
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=94.82 E-value=0.094 Score=48.51 Aligned_cols=63 Identities=8% Similarity=0.039 Sum_probs=50.0
Q ss_pred ceEEEEEccCCCChHHHHHHHHHcCCCeEEEEEEEecCCEEEEEEEEEeCCCChHHHHHHHHH
Q 010728 436 DAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTEDKVIHTFSIQTQSGASEQLKEKLLA 498 (502)
Q Consensus 436 ~~~I~I~c~~~~~~l~~im~aL~el~L~V~~a~~s~~~~~v~~~~~vk~~~g~~~~l~e~L~~ 498 (502)
.+.|.|.|++++|++.+|...|.+.|+.|..++..+..+.+...+.+..+....+.+++.|..
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~ 68 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETTLPL 68 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCCCCHHHHHHHHHH
Confidence 477999999999999999999999999999999998888877777776543122344544443
No 23
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=94.55 E-value=0.28 Score=38.77 Aligned_cols=51 Identities=8% Similarity=0.042 Sum_probs=42.5
Q ss_pred ceEEEEEccCCCChHHHHHHHHHcCCCeEEEEEEEecCCEEEEEEEEEeCC
Q 010728 436 DAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTEDKVIHTFSIQTQS 486 (502)
Q Consensus 436 ~~~I~I~c~~~~~~l~~im~aL~el~L~V~~a~~s~~~~~v~~~~~vk~~~ 486 (502)
.+.|+|.+++++|.|.+|...|.+.++.+.+.+....++.+...+.+.+.+
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~ 55 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKN 55 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESS
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECC
Confidence 467889999999999999999999999999999987666555566666654
No 24
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=94.40 E-value=0.56 Score=40.64 Aligned_cols=126 Identities=8% Similarity=-0.043 Sum_probs=79.4
Q ss_pred CchHHHHHHHhhccCCCceEEEeeeecCCCCCCeeEEeCCcccCCCCCCCCCCCccCCcccchhHHHHHHHHHHHHHhHh
Q 010728 44 GDLGVHQRLCQVVEGSNWNYAIYWHASNLKSGGSALIWGDGHCRDPKDGAVGGGKSSGVNKVDEVERKEEVKKRVLQKLH 123 (502)
Q Consensus 44 ~~~~Lq~~L~~lv~~~~W~YAIFWq~s~~~~g~~vL~WgDGy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~~l~~L~ 123 (502)
..+.|+..++.+++-.+.+++.+|-+..+.. .+..|..+|....... .
T Consensus 21 ~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~--~l~~~~~~~~~~~~~~----~-------------------------- 68 (177)
T 3k2n_A 21 PQELFRTVTDKLRLLFAFDSAVIITIDRERR--EASVFFEMLRFELPEQ----L-------------------------- 68 (177)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEEEEEETTTT--EEEEEEEECSSCCCST----T--------------------------
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEEEcCCCC--eEEeEEecccCCCCch----h--------------------------
Confidence 3467888888888889999999998877642 4555544433211000 0
Q ss_pred hhhCCCccccccCCCCcceeEEEEEeeeeeeCCCCCCCcceeecCCCceEeeCCCCCCC-Ccch-hh--hhhhhcCCceE
Q 010728 124 ACFGGLENYASRFDGVSGVEMFYLTSMYFNFRCDSAYGPGHAYKSGRSIWTSGIVSCSD-HYES-RS--FLAMSAGFQTV 199 (502)
Q Consensus 124 ~l~~~~~~~al~~~~~td~Ewfyl~sm~~sF~~G~~GlpG~a~~sg~~~Wl~~~~~~~~-~~~~-R~--~lA~saGIqTv 199 (502)
. ...++.+ .|+.|+++.+++++.+ +....+. ..+. +. ......|++.+
T Consensus 69 -----------~---------------~~~~~~~-~~~~~~v~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~s~ 120 (177)
T 3k2n_A 69 -----------R---------------HQTRSIA-GTWLEGHLDDRTVTVA-SIARDIPSFGADGAPLLWTLHELGMRQI 120 (177)
T ss_dssp -----------C---------------CSEEECT-TSGGGGGTTCCSCEEE-ETTTTCTTTTTTTCHHHHHHHHHTCCEE
T ss_pred -----------h---------------cccCCcc-ccHHHHHhccCCceEe-chhhcccccCCcchhHHHHHHHcCceEE
Confidence 0 0134557 8999999999999998 4433221 1122 22 12457899999
Q ss_pred EEeec-----CCceeeeccccccc---CCHHHHHHHHH
Q 010728 200 VFVPA-----KSGVVELGSVKLIP---EEQNVVEMVKT 229 (502)
Q Consensus 200 vcIPv-----~~GVvELGSt~~I~---Ed~~lv~~vk~ 229 (502)
+|||+ .-|||.+++...-. +|..+++.+-.
T Consensus 121 l~vPL~~~~~~iGvL~l~~~~~~~f~~~d~~ll~~lA~ 158 (177)
T 3k2n_A 121 VLSPLRSGGRVIGFLSFVSAEEKLWSDGDKSLLSGVSS 158 (177)
T ss_dssp EEEEEEETTEEEEEEEEEESSCCCCCHHHHHHHHHHHH
T ss_pred EEEEEEECCEEEEEEEEEECCCCCCCHHHHHHHHHHHH
Confidence 99998 33899999866433 34445554443
No 25
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=93.91 E-value=0.061 Score=46.33 Aligned_cols=123 Identities=8% Similarity=0.024 Sum_probs=77.7
Q ss_pred CchHHHHHHHhhccCCCceEEEeeeecCCCCCCeeEEeCCcccCCCCCCCCCCCccCCcccchhHHHHHHHHHHHHHhHh
Q 010728 44 GDLGVHQRLCQVVEGSNWNYAIYWHASNLKSGGSALIWGDGHCRDPKDGAVGGGKSSGVNKVDEVERKEEVKKRVLQKLH 123 (502)
Q Consensus 44 ~~~~Lq~~L~~lv~~~~W~YAIFWq~s~~~~g~~vL~WgDGy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~~l~~L~ 123 (502)
..+.|+..++.+++-.+++++.+|....+. +...+.-..|+-. ..
T Consensus 23 ~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~-~~l~~~~~~g~~~----~~------------------------------ 67 (171)
T 3trc_A 23 LEQALKLVVVRLCEALPADACSLFICDDVH-GEYVLMATQGLNS----KQ------------------------------ 67 (171)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEEEEETTT-TEEEEEEEESSCG----GG------------------------------
T ss_pred HHHHHHHHHHHHHHHhCCcEEEEEEEECCC-CeEEEEEecCCCc----cc------------------------------
Confidence 356788888888889999999999988764 2122221111110 00
Q ss_pred hhhCCCccccccCCCCcceeEEEEEeeeeeeCCCCCCCcceeecCCCceEeeCCCCCCCCcchhhhhhhhcCCceEEEee
Q 010728 124 ACFGGLENYASRFDGVSGVEMFYLTSMYFNFRCDSAYGPGHAYKSGRSIWTSGIVSCSDHYESRSFLAMSAGFQTVVFVP 203 (502)
Q Consensus 124 ~l~~~~~~~al~~~~~td~Ewfyl~sm~~sF~~G~~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~lA~saGIqTvvcIP 203 (502)
.. ...++.+ +|+.|+++.+++|+++.+....+... . .......|++.++|||
T Consensus 68 ----------~~---------------~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~-~-~~~~~~~~~~s~l~vP 119 (171)
T 3trc_A 68 ----------VG---------------KLRLKFG-EGLIGLVGEREEPINLADAPLHPAYK-H-RPELGEEDYHGFLGIP 119 (171)
T ss_dssp ----------TT---------------TCEEETT-CHHHHHHHHHTSCEEESCGGGSTTCC-C-CGGGCCCCCCEEEEEE
T ss_pred ----------cc---------------cEeecCC-CChhhHHHhcCCeEEeCCCCCCCccc-c-cccCCcccccEEEEEe
Confidence 00 0135668 89999999999999997655422111 1 1112357999999999
Q ss_pred c-----CCceeeeccccccc---CCHHHHHHHHH
Q 010728 204 A-----KSGVVELGSVKLIP---EEQNVVEMVKT 229 (502)
Q Consensus 204 v-----~~GVvELGSt~~I~---Ed~~lv~~vk~ 229 (502)
+ .-|||.+++.+.-. +|..+++.+-.
T Consensus 120 l~~~~~~~Gvl~~~~~~~~~f~~~d~~~l~~la~ 153 (171)
T 3trc_A 120 IIEQGELLGILVIQQLESHHFAEEEEAFCVTLAI 153 (171)
T ss_dssp EEETTEEEEEEEEEESSSCCCCHHHHHHHHHHHH
T ss_pred EEECCEEEEEEEEeecCCCCCCHHHHHHHHHHHH
Confidence 9 23899999976432 34445554443
No 26
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=93.01 E-value=0.097 Score=44.45 Aligned_cols=74 Identities=7% Similarity=-0.048 Sum_probs=46.5
Q ss_pred eeCCCCCCCcceeecCCCceEeeCCCCCCCCcchhhhhhhhcCCceEEEeecC-----Cceeeeccccccc---CCHHHH
Q 010728 153 NFRCDSAYGPGHAYKSGRSIWTSGIVSCSDHYESRSFLAMSAGFQTVVFVPAK-----SGVVELGSVKLIP---EEQNVV 224 (502)
Q Consensus 153 sF~~G~~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~lA~saGIqTvvcIPv~-----~GVvELGSt~~I~---Ed~~lv 224 (502)
.++.+ .|+.|+++.+++++++.+....+. +.........|+++++|||+. -|||.+++.+.-. +|..++
T Consensus 74 ~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~f~~~~~~~l 150 (171)
T 3ci6_A 74 SLQLS-EGLVGLVGQREEIVNLENASKHER--FAYLPETGEEIYNSFLGVPVMYRRKVMGVLVVQNKQPQDFSEAAESFL 150 (171)
T ss_dssp EEETT-SHHHHHHHHHTSCEEESSGGGSTT--C---------CCCEEEEEEEEETTEEEEEEEEEESSCCCCCHHHHHHH
T ss_pred eeecc-CCeehhhhccCceEEecCCCcCcc--hhccccccccccceEEEEeEEECCEEEEEEEEecCCCCCCCHHHHHHH
Confidence 34567 899999999999999976544322 111111255789999999992 3899999986532 344455
Q ss_pred HHHHH
Q 010728 225 EMVKT 229 (502)
Q Consensus 225 ~~vk~ 229 (502)
+.+-.
T Consensus 151 ~~la~ 155 (171)
T 3ci6_A 151 VTLCA 155 (171)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 27
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=92.99 E-value=0.043 Score=49.63 Aligned_cols=76 Identities=12% Similarity=0.000 Sum_probs=53.6
Q ss_pred eeCCCCCCCcceeecCCCceEeeCCCCCCCCcchhhhh-hhhcCCceEEEeecCC-----ceeeecccccc----cCCHH
Q 010728 153 NFRCDSAYGPGHAYKSGRSIWTSGIVSCSDHYESRSFL-AMSAGFQTVVFVPAKS-----GVVELGSVKLI----PEEQN 222 (502)
Q Consensus 153 sF~~G~~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~l-A~saGIqTvvcIPv~~-----GVvELGSt~~I----~Ed~~ 222 (502)
.++.| +|+.|+++.+|+|+.+.+....+ .|.+... .....++.++|||+.. |||+|.+...- .+|..
T Consensus 82 ~~~~~-~gi~g~v~~tg~~v~i~d~~~d~--~f~~~~~~~~~~~~~S~L~vPl~~~~~viGVL~l~n~~~~~~Ft~~d~~ 158 (180)
T 3dba_A 82 VFPLD-IGIAGWVAHTKKFFNIPDVKKNN--HFSDYLDKKTGYTTVNMMAIPITQGKEVLAVVMALNKLNASEFSKEDEE 158 (180)
T ss_dssp EECTT-SSHHHHHHHHTCCEEESCGGGCT--TCCCHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEESSSSSCCHHHHH
T ss_pred eeeCC-CCHHHHHHHhCCEEEecCCCCCc--ccChhhccccCccccEEEEEEeccCCEEEEEEEEEeCCCCCCCCHHHHH
Confidence 46889 99999999999999998775432 2332211 1224579999999933 99999887532 35677
Q ss_pred HHHHHHHHh
Q 010728 223 VVEMVKTVF 231 (502)
Q Consensus 223 lv~~vk~~F 231 (502)
+++.+-+..
T Consensus 159 lL~~lA~~a 167 (180)
T 3dba_A 159 VFKKYLNFI 167 (180)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766554
No 28
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=92.92 E-value=0.05 Score=51.20 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=55.2
Q ss_pred eeCCCCCCCcceeecCCCceEeeCCCCCCCCcchhhhhhhhcCCceEEEeecC-----Cceeeecccccc---cCCHHHH
Q 010728 153 NFRCDSAYGPGHAYKSGRSIWTSGIVSCSDHYESRSFLAMSAGFQTVVFVPAK-----SGVVELGSVKLI---PEEQNVV 224 (502)
Q Consensus 153 sF~~G~~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~lA~saGIqTvvcIPv~-----~GVvELGSt~~I---~Ed~~lv 224 (502)
.|+.| +|+.|+|+.+|+++.+.+....+.. .+...+.+.++|||+. -|||++.|.+.- .+|..++
T Consensus 88 ~i~~G-eGi~G~aa~tg~~i~V~Dv~~~p~~------~~~~~~~~S~l~VPI~~~g~viGVL~i~s~~~~~F~e~d~~~L 160 (195)
T 1vhm_A 88 RIPVG-RGVCGTAVARNQVQRIEDVHVFDGH------IACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGL 160 (195)
T ss_dssp EEETT-SHHHHHHHHHTSCEEESCTTTCTTC------CCSCCCCSEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHHH
T ss_pred EecCC-CChHHHHHhcCCEEEECCcccCcch------hhcCCCccEEEEEeEeECCEEEEEEEecCCCCCCCCHHHHHHH
Confidence 57889 9999999999999999888754322 2234578999999993 299999997643 3466777
Q ss_pred HHHHHHhc
Q 010728 225 EMVKTVFE 232 (502)
Q Consensus 225 ~~vk~~F~ 232 (502)
+.+-....
T Consensus 161 ~~lA~~ia 168 (195)
T 1vhm_A 161 RQLVAQLE 168 (195)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766653
No 29
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=92.61 E-value=0.32 Score=45.37 Aligned_cols=64 Identities=11% Similarity=0.002 Sum_probs=50.3
Q ss_pred CceEEEEEccCCCChHHHHHHHHHcCCCeEEEEEEEecC------CEEEEEEEEEeCCCChHHHHHHHHH
Q 010728 435 EDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTE------DKVIHTFSIQTQSGASEQLKEKLLA 498 (502)
Q Consensus 435 ~~~~I~I~c~~~~~~l~~im~aL~el~L~V~~a~~s~~~------~~v~~~~~vk~~~g~~~~l~e~L~~ 498 (502)
....|.|.|+.++|++.+|-..|-++|+.|..++..+.+ +.++..+.+..+.+..+.+++.|..
T Consensus 92 ~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~~~~~~l~~~l~~ 161 (195)
T 2nyi_A 92 REYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPFPLYQEVVTALSR 161 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEGGGHHHHHHHHHH
T ss_pred cEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCCCccHHHHHHHHH
Confidence 457899999999999999999999999999999998765 6777777776654211455555554
No 30
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=92.59 E-value=0.076 Score=46.93 Aligned_cols=48 Identities=10% Similarity=0.068 Sum_probs=40.4
Q ss_pred eeCCCCCCCcceeecCCCceEeeCCCCCCCCcchhhhhhhhcCCceEEEeecC-----Cceeeeccc
Q 010728 153 NFRCDSAYGPGHAYKSGRSIWTSGIVSCSDHYESRSFLAMSAGFQTVVFVPAK-----SGVVELGSV 214 (502)
Q Consensus 153 sF~~G~~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~lA~saGIqTvvcIPv~-----~GVvELGSt 214 (502)
.|+.| +|+.|+++.+|+|+++.+...-+ |+..++|||.. -|||.+.+.
T Consensus 55 ~~~~~-~g~~g~v~~~g~~v~v~d~~~d~-------------~~~s~l~vPL~~~~~~~GvL~l~~~ 107 (149)
T 2vjw_A 55 AIPVQ-DNAIGQAFRDRAPRRLDVLDGPG-------------LGGPALVLPLRATDTVAGVLVAVQG 107 (149)
T ss_dssp EEESS-SSHHHHHHHHCCCEEESCCCTTS-------------CEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred ccCCC-CCHHHHHhhcCceEEecCcccCC-------------CCCeEEEEEEccCCeEEEEEEEeeC
Confidence 57789 99999999999999998765322 78999999993 399999887
No 31
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=92.49 E-value=0.17 Score=44.38 Aligned_cols=77 Identities=14% Similarity=0.139 Sum_probs=54.1
Q ss_pred eeeCCCCCCCcceeecCCCceEeeCCCCCCCCcchhh-hhhhhcCCceEEEeec-----CCceeeecccccc----cCCH
Q 010728 152 FNFRCDSAYGPGHAYKSGRSIWTSGIVSCSDHYESRS-FLAMSAGFQTVVFVPA-----KSGVVELGSVKLI----PEEQ 221 (502)
Q Consensus 152 ~sF~~G~~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~-~lA~saGIqTvvcIPv-----~~GVvELGSt~~I----~Ed~ 221 (502)
..|+.| .|+.|+++.+++|+++.+....+. |.+. ......+++.++|||+ .-|||.+++...- .+|.
T Consensus 84 ~~~~~~-~~~~~~v~~~~~~~~i~d~~~~~~--~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~l~~~~~~~~f~~~d~ 160 (189)
T 2e4s_A 84 IRFSIE-KGIAGQVARTGEVLNIPDAYADPR--FNREVDLYTGYTTRNILCMPIVSRGSVIGVVQMVNKISGSAFSKTDE 160 (189)
T ss_dssp CEEETT-SHHHHHHHHHCCCEEESCGGGSTT--CCTHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEETTSSSCCHHHH
T ss_pred eEeeCC-CcHHHHHHHhCCEEEecCCCcCcc--cChhhccccCCccceEEEEEeccCCeEEEEEEEEeCCCCCCCCHHHH
Confidence 468889 999999999999999986654322 2221 1223478999999999 2389999988654 3466
Q ss_pred HHHHHHHHHh
Q 010728 222 NVVEMVKTVF 231 (502)
Q Consensus 222 ~lv~~vk~~F 231 (502)
.+++.+-...
T Consensus 161 ~ll~~la~~~ 170 (189)
T 2e4s_A 161 NNFKMFAVFC 170 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655443
No 32
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=92.13 E-value=0.098 Score=45.35 Aligned_cols=76 Identities=13% Similarity=0.153 Sum_probs=49.2
Q ss_pred eeCCCCCCCcceeecCCCceEeeCCCCCCCCcchhhhhhhhcCCceEEEeecC-----Cceeeeccccccc---CCHHHH
Q 010728 153 NFRCDSAYGPGHAYKSGRSIWTSGIVSCSDHYESRSFLAMSAGFQTVVFVPAK-----SGVVELGSVKLIP---EEQNVV 224 (502)
Q Consensus 153 sF~~G~~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~lA~saGIqTvvcIPv~-----~GVvELGSt~~I~---Ed~~lv 224 (502)
.++.| +|+.|+++.+++|+++.+....+. +.........|++.++|||+. -|||.+++.+.-. +|..++
T Consensus 77 ~~~~~-~~~~~~~~~~~~~~~i~d~~~~~~--~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~~~~~~~~~f~~~~~~~l 153 (181)
T 3e0y_A 77 RIKIG-DGITGSVARDGQYISLSRASQDPR--YRYFPELQEEKYNSMLSFPIGDKKEVYGVINLNTTSIRSFHEDEIYFV 153 (181)
T ss_dssp EEETT-TSSHHHHHHHCCCEEEEEECCCCC--C---------CEEEEEEEEEECSSCEEEEEEEEESSCCCCCHHHHHHH
T ss_pred cccCC-CCeeeehhhcCCeEEecCcccCcc--ccccccccccCcceEEEEEEEeCCeEEEEEEEeeCCCCCCCHHHHHHH
Confidence 45778 999999999999999987654332 221122345799999999993 3899999986432 345555
Q ss_pred HHHHHHh
Q 010728 225 EMVKTVF 231 (502)
Q Consensus 225 ~~vk~~F 231 (502)
+.+-..+
T Consensus 154 ~~la~~~ 160 (181)
T 3e0y_A 154 SIIANLI 160 (181)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554433
No 33
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=91.90 E-value=0.78 Score=40.05 Aligned_cols=73 Identities=16% Similarity=0.147 Sum_probs=50.5
Q ss_pred CCCCCCcceeecCCCceEeeCCCCCCCCcchhhhhhhhcCCceEEEeec------CCceeeecc-cccc---cCCHHHHH
Q 010728 156 CDSAYGPGHAYKSGRSIWTSGIVSCSDHYESRSFLAMSAGFQTVVFVPA------KSGVVELGS-VKLI---PEEQNVVE 225 (502)
Q Consensus 156 ~G~~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~lA~saGIqTvvcIPv------~~GVvELGS-t~~I---~Ed~~lv~ 225 (502)
.| +|+.|+++.+|+|+.+.+....+. ...+. .....|++.++|||+ .-|||.+++ ...- .+|..+++
T Consensus 70 ~~-~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~-~~~~~g~~s~~~vPl~~~~~~~~GvL~l~~~~~~~~f~~~d~~lL~ 146 (181)
T 2qyb_A 70 EI-ETYIGEAFLSNRLQFVNDTQYMTK-PLTRE-LMQKEGIKSFAHIPISRKGEPPFGILSVFSRTIVGLFNEPFLNLLE 146 (181)
T ss_dssp CT-TSHHHHHHHHTSCEEESCGGGCSC-HHHHH-HHHHTTCCEEEEEEECCTTSCCCEEEEEEESSCSSCCCHHHHHHHH
T ss_pred CC-CCchhhhhhcCCCEEecChhcCCc-hhhHH-HHHhcCcceEEEEEEEeCCCeEEEEEEEecCCCCCCCCHHHHHHHH
Confidence 37 899999999999999977654332 11122 234579999999998 348999998 5442 34556666
Q ss_pred HHHHHh
Q 010728 226 MVKTVF 231 (502)
Q Consensus 226 ~vk~~F 231 (502)
.+-..+
T Consensus 147 ~la~~~ 152 (181)
T 2qyb_A 147 SLAGQL 152 (181)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665555
No 34
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=91.73 E-value=0.06 Score=49.36 Aligned_cols=72 Identities=18% Similarity=0.243 Sum_probs=54.0
Q ss_pred eeCCCCCCCcceeecCCCceEeeCCCCCCCCcchhhhhhhhcCCceEEEeecC-----Cceeeecccccc---cCCHHHH
Q 010728 153 NFRCDSAYGPGHAYKSGRSIWTSGIVSCSDHYESRSFLAMSAGFQTVVFVPAK-----SGVVELGSVKLI---PEEQNVV 224 (502)
Q Consensus 153 sF~~G~~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~lA~saGIqTvvcIPv~-----~GVvELGSt~~I---~Ed~~lv 224 (502)
.|+.| +|+.|+|+.+|+++.+.+.+..+.. ++...+++..+|||+. -|||++.|.+.- .+|..++
T Consensus 77 ~i~~g-eGi~G~v~~~g~~~~v~Dv~~~p~~------~~~~~~~~S~i~vPi~~~g~viGVL~i~s~~~~~F~~~d~~~L 149 (167)
T 3mmh_A 77 RIPFG-RGVCGQAWAKGGTVVVGDVDAHPDH------IACSSLSRSEIVVPLFSDGRCIGVLDADSEHLAQFDETDALYL 149 (167)
T ss_dssp EEETT-SHHHHHHHHHTSCEEESCGGGSTTC------CCSSTTCCEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHHH
T ss_pred EeccC-CChHHHHHhCCcEEEECCcccCcch------hhcCccCCeEEEEEeccCCEEEEEEEEecCCCCCCCHHHHHHH
Confidence 67889 9999999999999999887764432 1234678999999992 389999986542 3466677
Q ss_pred HHHHHHh
Q 010728 225 EMVKTVF 231 (502)
Q Consensus 225 ~~vk~~F 231 (502)
+.+-...
T Consensus 150 ~~lA~~l 156 (167)
T 3mmh_A 150 GELAKIL 156 (167)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665544
No 35
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=91.16 E-value=0.36 Score=41.29 Aligned_cols=128 Identities=7% Similarity=0.012 Sum_probs=79.0
Q ss_pred CchHHHHHHHhhccCCCceEEEeeeecCCCCCCeeEEeCCcccCCCCCCCCCCCccCCcccchhHHHHHHHHHHHHHhHh
Q 010728 44 GDLGVHQRLCQVVEGSNWNYAIYWHASNLKSGGSALIWGDGHCRDPKDGAVGGGKSSGVNKVDEVERKEEVKKRVLQKLH 123 (502)
Q Consensus 44 ~~~~Lq~~L~~lv~~~~W~YAIFWq~s~~~~g~~vL~WgDGy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~~l~~L~ 123 (502)
..+.|+..++.+++-.+.+++.+|-...+. + .|...-++- +......
T Consensus 17 ~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~-~--~l~~~~~~g--~~~~~~~---------------------------- 63 (169)
T 3oov_A 17 VDEVLRLCAEGLHDVLGYERVNILMADTAR-T--SLSFVAAVG--TADFNPA---------------------------- 63 (169)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEEEECTTS-S--EEEEEEEES--CSSCCCT----------------------------
T ss_pred HHHHHHHHHHHHHHhhCCceEEEEEEeCCC-C--eEEEEEEeC--chhhhhh----------------------------
Confidence 356788888888889999999999988764 2 333222111 1100000
Q ss_pred hhhCCCccccccCCCCcceeEEEEEeeeeeeCCCCCCCcceeecCCCceEeeCCCCCCCCcchhh--hhhhhcCCceEEE
Q 010728 124 ACFGGLENYASRFDGVSGVEMFYLTSMYFNFRCDSAYGPGHAYKSGRSIWTSGIVSCSDHYESRS--FLAMSAGFQTVVF 201 (502)
Q Consensus 124 ~l~~~~~~~al~~~~~td~Ewfyl~sm~~sF~~G~~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~--~lA~saGIqTvvc 201 (502)
.+.+.+..+ .|+.|+++.+++|+++.+....+.....+. ......|++.++|
T Consensus 64 -------------------------~~~~~~~~~-~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~ 117 (169)
T 3oov_A 64 -------------------------GVVLPLDQR-GGVITKCFTDRQVYMIDDVSAYPTDFRLQSPYDAIRALRSKSFVI 117 (169)
T ss_dssp -------------------------TCEEESSGG-GHHHHHHHHHTCCEEESCGGGSCGGGSCCTTGGGCGGGCCSSEEE
T ss_pred -------------------------cccCCcccc-cchHHHHHhcCCCEEeccccchhhhhhccccHHHHHhcCcCcEEE
Confidence 000112226 889999999999999986654332221111 1234579999999
Q ss_pred eecC-----Cceeeeccccc----ccCCHHHHHHHHHH
Q 010728 202 VPAK-----SGVVELGSVKL----IPEEQNVVEMVKTV 230 (502)
Q Consensus 202 IPv~-----~GVvELGSt~~----I~Ed~~lv~~vk~~ 230 (502)
+|+. -|||.+++... -.+|..+++.+-..
T Consensus 118 vPl~~~~~~iGvl~~~~~~~~~~f~~~d~~~l~~~a~~ 155 (169)
T 3oov_A 118 CPIVVKGEAIGVFAVDNRSSRRSLNDTDVDTIKLFADQ 155 (169)
T ss_dssp EEEEETTEEEEEEEEECTTSSSCCCHHHHHHHHHHHHH
T ss_pred EEEEeCCcEEEEEEEEccccCCCCCHHHHHHHHHHHHH
Confidence 9993 39999998643 23455566655443
No 36
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=90.79 E-value=1.2 Score=40.92 Aligned_cols=65 Identities=20% Similarity=0.124 Sum_probs=51.4
Q ss_pred CceEEEEEccCCCChHHHHHHHHHcCCCeEEEEEEEecC--------CEEEEEEEEEeCCC-ChHHHHHHHHHH
Q 010728 435 EDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTE--------DKVIHTFSIQTQSG-ASEQLKEKLLAA 499 (502)
Q Consensus 435 ~~~~I~I~c~~~~~~l~~im~aL~el~L~V~~a~~s~~~--------~~v~~~~~vk~~~g-~~~~l~e~L~~a 499 (502)
....|.|.|+.++|++.+|.+.|.+.++.|..+...+.+ +.++..+.+..+.+ +.+.+++.|...
T Consensus 92 ~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~l~~~ 165 (192)
T 1u8s_A 92 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDAL 165 (192)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 456789999999999999999999999999999888653 46677777766543 446777777653
No 37
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=90.22 E-value=0.51 Score=40.07 Aligned_cols=70 Identities=9% Similarity=-0.071 Sum_probs=44.8
Q ss_pred CCCCCCcceeecCCCceEeeCCCCCCCCcchhhhhhhhcCCceEEEeecC-----CceeeecccccccC---CHHHHHHH
Q 010728 156 CDSAYGPGHAYKSGRSIWTSGIVSCSDHYESRSFLAMSAGFQTVVFVPAK-----SGVVELGSVKLIPE---EQNVVEMV 227 (502)
Q Consensus 156 ~G~~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~lA~saGIqTvvcIPv~-----~GVvELGSt~~I~E---d~~lv~~v 227 (502)
.| .|..|+++.+|+|+++.+....+. +......+...|++.++|||+. -|||.+.+...-.- |..+++.+
T Consensus 52 ~~-~~~~~~~~~~~~~~~i~d~~~~~~-~~~~~~~~~~~g~~s~~~vPl~~~~~~iGvl~~~~~~~~~f~~~~~~ll~~~ 129 (151)
T 3hcy_A 52 DG-HSPWITGANEPEPIFVENVDDAEF-SRELKESIVGEGIAALGFFPLVTEGRLIGKFMTYYDRPHRFADSEIGMALTI 129 (151)
T ss_dssp CB-CCSCC---CCCCCEEESCGGGSCC-CHHHHHHHHHHTCCEEEEEEEESSSSEEEEEEEEESSCCCCCHHHHHHHHHH
T ss_pred cC-CCchhhhhhcCCcEEEeChhhCcc-cchhHHHHHhcCchheEEeceEECCEEEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 37 889999999999999987654332 1122224567899999999993 28899987754333 34444443
No 38
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=89.83 E-value=0.15 Score=46.54 Aligned_cols=72 Identities=15% Similarity=0.202 Sum_probs=54.3
Q ss_pred eeCCCCCCCcceeecCCCceEeeCCCCCCCCcchhhhhhhhcCCceEEEeecC-----Cceeeecccccc---cCCHHHH
Q 010728 153 NFRCDSAYGPGHAYKSGRSIWTSGIVSCSDHYESRSFLAMSAGFQTVVFVPAK-----SGVVELGSVKLI---PEEQNVV 224 (502)
Q Consensus 153 sF~~G~~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~lA~saGIqTvvcIPv~-----~GVvELGSt~~I---~Ed~~lv 224 (502)
.++.| +|+.|+|+.+|+++-+.+.+..+.. .+...+.+..+|||+. =|||.+.|.+.- .+|..++
T Consensus 76 ri~~G-eGv~G~aa~~~~~i~V~Dv~~~p~~------i~~~~~~~Sei~VPI~~~g~viGVL~i~s~~~~~F~e~D~~~L 148 (160)
T 3ksh_A 76 HIPIG-KGVCGTAVSERRTQVVADVHQFKGH------IACDANSKSEIVVPIFKDDKIIGVLDIDAPITDRFDDNDKEHL 148 (160)
T ss_dssp EEETT-SHHHHHHHHHTSCEEESCGGGSTTC------CGGGTTCSEEEEEEEEETTEEEEEEEEEESSSSCCCHHHHHHH
T ss_pred EeeCC-CCHHHHHHhhCCEEEECCcccCccc------cccCcccCceEEEEEEECCEEEEEEEEecCCCCCCCHHHHHHH
Confidence 68899 9999999999999999988765532 2334568899999992 289999996543 3566677
Q ss_pred HHHHHHh
Q 010728 225 EMVKTVF 231 (502)
Q Consensus 225 ~~vk~~F 231 (502)
+.+-...
T Consensus 149 ~~lA~~l 155 (160)
T 3ksh_A 149 EAIVKII 155 (160)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
No 39
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=89.46 E-value=0.19 Score=46.43 Aligned_cols=74 Identities=12% Similarity=0.152 Sum_probs=56.6
Q ss_pred eeCCCCCCCcceeecCCCceEeeCCCCCCCCcchhhhhhhhcCCceEEEeecC-----Cceeeecccccc---cCCHHHH
Q 010728 153 NFRCDSAYGPGHAYKSGRSIWTSGIVSCSDHYESRSFLAMSAGFQTVVFVPAK-----SGVVELGSVKLI---PEEQNVV 224 (502)
Q Consensus 153 sF~~G~~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~lA~saGIqTvvcIPv~-----~GVvELGSt~~I---~Ed~~lv 224 (502)
.++.| +|+.|+|+.+|+++-+.+.+..+... +...+.+..+|||+. =|||.+.|...- .+|..++
T Consensus 77 ri~~G-eGv~G~va~tg~~i~V~Dv~~~p~~i------~~~~~~~Sei~VPI~~~g~viGVL~i~s~~~~~F~e~D~~~L 149 (171)
T 3rfb_A 77 RIALG-KGVCGEAAHFQETVIVGDVTTYLNYI------SCDSLAKSEIVVPMMKNGQLLGVLDLDSSEIEDYDAMDRDYL 149 (171)
T ss_dssp EEETT-SHHHHHHHHTTSCEEESCTTSCSSCC------CSCTTCCEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHHH
T ss_pred EeeCC-cCHHHHHHhhCCEEEECCcccCcccc------ccCcccCceEEEEEEECCEEEEEEEEecCCCCCCCHHHHHHH
Confidence 68899 99999999999999999888755431 223467899999992 299999996542 4577788
Q ss_pred HHHHHHhcC
Q 010728 225 EMVKTVFEG 233 (502)
Q Consensus 225 ~~vk~~F~~ 233 (502)
+.+-.....
T Consensus 150 ~~lA~~la~ 158 (171)
T 3rfb_A 150 EQFVAILLE 158 (171)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877776643
No 40
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=89.31 E-value=0.26 Score=41.35 Aligned_cols=74 Identities=9% Similarity=0.076 Sum_probs=49.7
Q ss_pred eeCCCCCCCcceeecCCCceEeeCCCCCCCCcchhhhhhhhcCCceEEEeecC-----Cceeeeccccc----ccCCHHH
Q 010728 153 NFRCDSAYGPGHAYKSGRSIWTSGIVSCSDHYESRSFLAMSAGFQTVVFVPAK-----SGVVELGSVKL----IPEEQNV 223 (502)
Q Consensus 153 sF~~G~~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~lA~saGIqTvvcIPv~-----~GVvELGSt~~----I~Ed~~l 223 (502)
.++.+ .|+.|+++.+++++++.+....+. +... .....|++.++|||+. -|||.+++... -.+|..+
T Consensus 56 ~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~--~~~~-~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~~f~~~~~~~ 131 (153)
T 2w3g_A 56 HLPKG-LGVIGLLIEDPKPLRLDDVSAHPA--SIGF-PPYHPPMRTFLGVPVRVRDESFGTLYLTDKTNGQPFSDDDEVL 131 (153)
T ss_dssp SCCCS-CTHHHHHHHSCSCEEESSGGGSTT--CCCC-CTTCCCCCCEEEEEEEETTEEEEEEEEEEETTSCCCCHHHHHH
T ss_pred cCCCC-CCHHHHHHhcCCcEEecCcccCch--hcCC-CCcCCCCCeEEEeeEEECCEEEEEEEEeeCCCCCCCCHHHHHH
Confidence 34568 899999999999999986543221 1101 0145689999999992 38999998765 2335555
Q ss_pred HHHHHHH
Q 010728 224 VEMVKTV 230 (502)
Q Consensus 224 v~~vk~~ 230 (502)
++.+-..
T Consensus 132 l~~la~~ 138 (153)
T 2w3g_A 132 VQALAAA 138 (153)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 41
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=87.10 E-value=1.8 Score=44.40 Aligned_cols=64 Identities=8% Similarity=0.105 Sum_probs=52.6
Q ss_pred CceEEEEEccCCCChHHHHHHHHHcCCCeEEEEEEEecCCEEEEEEEEEeCCC--ChHHHHHHHHH
Q 010728 435 EDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTEDKVIHTFSIQTQSG--ASEQLKEKLLA 498 (502)
Q Consensus 435 ~~~~I~I~c~~~~~~l~~im~aL~el~L~V~~a~~s~~~~~v~~~~~vk~~~g--~~~~l~e~L~~ 498 (502)
..+.|.|.|+.++|+...|...|-+.|..++.++....++.+...+.+.++.. +.+.+++.|..
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~ 76 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADVADGPALRHDVEA 76 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHHHTSHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCcCCHHHHHHHHHH
Confidence 45789999999999999999999999999999999999898888888877653 22455555543
No 42
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=84.35 E-value=4.5 Score=40.16 Aligned_cols=63 Identities=16% Similarity=0.152 Sum_probs=50.8
Q ss_pred CceEEEEEccCCCChHHHHHHHHHcCCCeEEEEEEE--ecCCEEEEEEEEEeCCC--ChHHHHHHHH
Q 010728 435 EDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVS--TTEDKVIHTFSIQTQSG--ASEQLKEKLL 497 (502)
Q Consensus 435 ~~~~I~I~c~~~~~~l~~im~aL~el~L~V~~a~~s--~~~~~v~~~~~vk~~~g--~~~~l~e~L~ 497 (502)
..+.|.|.|+++.|+..+|-..|-+.|+.+..++.. ...+.++..+.+..+.+ +.+.+++.+.
T Consensus 5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~L~~~f~ 71 (288)
T 3obi_A 5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFG 71 (288)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCCCHHHHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCCCHHHHHHHHH
Confidence 457899999999999999999999999999999885 35677777777777653 4556666664
No 43
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=82.82 E-value=0.75 Score=39.99 Aligned_cols=76 Identities=13% Similarity=0.134 Sum_probs=51.5
Q ss_pred eeCCCCCCCcceeecCCCceEeeCCCCCCCCcchhhhhhhhcCCceEEEeecC-----Cceeeeccccc----ccCCHHH
Q 010728 153 NFRCDSAYGPGHAYKSGRSIWTSGIVSCSDHYESRSFLAMSAGFQTVVFVPAK-----SGVVELGSVKL----IPEEQNV 223 (502)
Q Consensus 153 sF~~G~~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~lA~saGIqTvvcIPv~-----~GVvELGSt~~----I~Ed~~l 223 (502)
.|+.+ .|+.|+++.+|+++++.+....+... .........+++.++|+|.. -|||.+..... -.+|..+
T Consensus 85 ~~~~~-~~~~~~v~~~~~~~~i~d~~~~~~~~-~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~~f~~~d~~l 162 (189)
T 2zmf_A 85 RFSIE-KGIAGQVARTGEVLNIPDAYADPRFN-REVDLYTGYTTRNILCMPIVSRGSVIGVVQMVNKISGSAFSKTDENN 162 (189)
T ss_dssp EEETT-SHHHHHHHHHCCCEEESCGGGSTTCC-THHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEETTSSSCCHHHHHH
T ss_pred ccCCC-ccHHHHHHHhCCeEEEeccccccccc-ccchhhcccccceEEEeeecccCceeeEEEEEEcCCCCCcCHHHHHH
Confidence 56788 99999999999999998765533322 22233445689999999982 27888864432 2345666
Q ss_pred HHHHHHH
Q 010728 224 VEMVKTV 230 (502)
Q Consensus 224 v~~vk~~ 230 (502)
++.+-..
T Consensus 163 l~~lA~q 169 (189)
T 2zmf_A 163 FKMFAVF 169 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665443
No 44
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=82.50 E-value=6.1 Score=39.16 Aligned_cols=63 Identities=11% Similarity=0.181 Sum_probs=49.5
Q ss_pred CceEEEEEccCCCChHHHHHHHHHcCCCeEEEEEEE--ecCCEEEEEEEEEeCCC-ChHHHHHHHH
Q 010728 435 EDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVS--TTEDKVIHTFSIQTQSG-ASEQLKEKLL 497 (502)
Q Consensus 435 ~~~~I~I~c~~~~~~l~~im~aL~el~L~V~~a~~s--~~~~~v~~~~~vk~~~g-~~~~l~e~L~ 497 (502)
..+.|.|.|+++.|+..+|-..|-+.|+.+..++.. ...+.++..+.+..+.+ +.+.+++.+.
T Consensus 7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~L~~~f~ 72 (286)
T 3n0v_A 7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPDDFDEAGFRAGLA 72 (286)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCSSCCHHHHHHHHH
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCCCCCHHHHHHHHH
Confidence 457799999999999999999999999999999988 45677766666666542 3456666654
No 45
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=82.34 E-value=5.5 Score=39.87 Aligned_cols=63 Identities=13% Similarity=0.154 Sum_probs=49.9
Q ss_pred CceEEEEEccCCCChHHHHHHHHHcCCCeEEEEEEEec--CCEEEEEEEEEeCCC--ChHHHHHHHH
Q 010728 435 EDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTT--EDKVIHTFSIQTQSG--ASEQLKEKLL 497 (502)
Q Consensus 435 ~~~~I~I~c~~~~~~l~~im~aL~el~L~V~~a~~s~~--~~~v~~~~~vk~~~g--~~~~l~e~L~ 497 (502)
..+.|.|.|+++.|+..+|-..|-+.|+.+..++.... .+.++..+.+..+.+ +.+.+++.+.
T Consensus 21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~~~~~~L~~~l~ 87 (302)
T 3o1l_A 21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDLDGFREAFT 87 (302)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSSSCHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCCCCHHHHHHHHH
Confidence 34779999999999999999999999999999998864 577776676766542 4456666664
No 46
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=82.18 E-value=2.3 Score=42.43 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=43.4
Q ss_pred eeCCCCCCCcceeecCCCceEee-CCCCCCCCcchhhhhh-hhcCCceEEEeecCC------ceeeecccc
Q 010728 153 NFRCDSAYGPGHAYKSGRSIWTS-GIVSCSDHYESRSFLA-MSAGFQTVVFVPAKS------GVVELGSVK 215 (502)
Q Consensus 153 sF~~G~~GlpG~a~~sg~~~Wl~-~~~~~~~~~~~R~~lA-~saGIqTvvcIPv~~------GVvELGSt~ 215 (502)
.++.| .|+.|+++.+|+++++. +....+.....+.... ...+++.++|||+.. |||.+.+..
T Consensus 262 ~~~~~-~~~~~~v~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~ 331 (398)
T 1ykd_A 262 RVPIG-KGFAGIVAASGQKLNIPFDLYDHPDSATAKQIDQQNGYRTCSLLCMPVFNGDQELIGVTQLVNKK 331 (398)
T ss_dssp EEETT-SHHHHHHHHHCCCEEECSCGGGSTTCHHHHHHHHHHTCCCCCEEEEEEECSSSCEEEEEEEEEEC
T ss_pred eccCC-CchhhHHhccCCeEEeccccccCcccCcccchhhhcCCeeeeEEEEeeecCCCCEEEEEEEEecC
Confidence 57889 99999999999999997 6544332211111111 123567899999964 899998876
No 47
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=82.02 E-value=5.8 Score=39.51 Aligned_cols=63 Identities=16% Similarity=0.261 Sum_probs=49.2
Q ss_pred CceEEEEEccCCCChHHHHHHHHHcCCCeEEEEEEE--ecCCEEEEEEEEEeC--C--CChHHHHHHHH
Q 010728 435 EDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVS--TTEDKVIHTFSIQTQ--S--GASEQLKEKLL 497 (502)
Q Consensus 435 ~~~~I~I~c~~~~~~l~~im~aL~el~L~V~~a~~s--~~~~~v~~~~~vk~~--~--g~~~~l~e~L~ 497 (502)
..+.|.+.|+++.|+..+|-..|-+.|+.+..++.. ...+.++..+.+..+ . .+.+.+++.+.
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~ 77 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFE 77 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHH
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHH
Confidence 457799999999999999999999999999999988 455777666666665 2 24456666654
No 48
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=81.20 E-value=1.2 Score=43.89 Aligned_cols=76 Identities=12% Similarity=0.068 Sum_probs=50.5
Q ss_pred eeeCCCCCCCcceeecCCCceEeeCCCCCCCCcchhhhhhhhcCCceEEEeec-CC------ceeeeccccc----ccCC
Q 010728 152 FNFRCDSAYGPGHAYKSGRSIWTSGIVSCSDHYESRSFLAMSAGFQTVVFVPA-KS------GVVELGSVKL----IPEE 220 (502)
Q Consensus 152 ~sF~~G~~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~lA~saGIqTvvcIPv-~~------GVvELGSt~~----I~Ed 220 (502)
..|+.| +|+.|.++.+++|+++.+....+. ...-.+...+++.++|||+ .+ |||.+.+... -.+|
T Consensus 74 ~~~~~~-~g~~g~~~~~~~~~~i~d~~~~~~---~~~~~~~~~~~~s~l~vPl~~~~~~~~~Gvl~l~~~~~~~~f~~~d 149 (368)
T 1mc0_A 74 VSFPLT-MGRLGQVVEDKQCIQLKDLTSDDV---QQLQNMLGCELQAMLCVPVISRATDQVVALACAFNKLGGDFFTDED 149 (368)
T ss_dssp EEEESS-SSSHHHHHHHCCCEEGGGSCHHHH---HHHHHHHCSCCCCEEEEEEECTTTCSEEEEEEEEEESSCSSCCSHH
T ss_pred eeeccc-cCHHHHHHhcCCeEEecccccccc---cccccccCcccceEEEEEeecCCCCcEEEEEEeecCCCCCCCCHHH
Confidence 458899 999999999999999976543111 1111223457899999999 33 7999876543 2345
Q ss_pred HHHHHHHHHHh
Q 010728 221 QNVVEMVKTVF 231 (502)
Q Consensus 221 ~~lv~~vk~~F 231 (502)
..+++.+-..+
T Consensus 150 ~~~l~~la~~~ 160 (368)
T 1mc0_A 150 EHVIQHCFHYT 160 (368)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56666554433
No 49
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=80.82 E-value=6.4 Score=39.03 Aligned_cols=63 Identities=13% Similarity=0.121 Sum_probs=47.5
Q ss_pred CceEEEEEccCCCChHHHHHHHHHcCCCeEEEEEEE--ecCCEEEEEEEEEeCCCChHHHHHHHH
Q 010728 435 EDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVS--TTEDKVIHTFSIQTQSGASEQLKEKLL 497 (502)
Q Consensus 435 ~~~~I~I~c~~~~~~l~~im~aL~el~L~V~~a~~s--~~~~~v~~~~~vk~~~g~~~~l~e~L~ 497 (502)
..+.|.+.|+++.|+..+|-..|-+.|+.+..++.. ...+.++..+.+..+......+++.+.
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~L~~~f~ 70 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPVAGVNDFNSAFG 70 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC---CHHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCCCCHHHHHHHHH
Confidence 357899999999999999999999999999999886 345777666666554423346666654
No 50
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=79.40 E-value=1.1 Score=49.34 Aligned_cols=77 Identities=13% Similarity=0.075 Sum_probs=53.1
Q ss_pred eeCCCCCCCcceeecCCCceEeeCCCCCCCCcchhhhhh-hhcCCceEEEeec--C-C---ceeeecccccc----cCCH
Q 010728 153 NFRCDSAYGPGHAYKSGRSIWTSGIVSCSDHYESRSFLA-MSAGFQTVVFVPA--K-S---GVVELGSVKLI----PEEQ 221 (502)
Q Consensus 153 sF~~G~~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~lA-~saGIqTvvcIPv--~-~---GVvELGSt~~I----~Ed~ 221 (502)
.++.| .|+.|+++.+|+++.+.+....+. |.+.... ...+++.++|+|+ . + |||.+.+...- .+|.
T Consensus 245 ~~~~~-~gi~g~v~~~g~~v~i~d~~~d~~--~~~~~~~~~g~~~rS~L~vPL~~~~g~viGVL~l~~~~~~~~f~~~d~ 321 (691)
T 3ibj_A 245 RIPAD-QGIAGHVATTGQILNIPDAYAHPL--FYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDE 321 (691)
T ss_dssp EEETT-SHHHHHHHHHCSCEEESCSTTSTT--C------CCSCCCCCEEEEECCCSSSCCCEEEEEEEESSSSSCCTTTT
T ss_pred eccCC-CCHHHHHHHhCCEEEecCcccCcc--ccchhhcccCCeeeeEEEEeEECCCCCEEEEEEEEECCCCCCCCHHHH
Confidence 57788 999999999999999987655332 2222111 1245899999998 3 2 89999876543 5678
Q ss_pred HHHHHHHHHhc
Q 010728 222 NVVEMVKTVFE 232 (502)
Q Consensus 222 ~lv~~vk~~F~ 232 (502)
.+++.+-....
T Consensus 322 ~ll~~lA~~~a 332 (691)
T 3ibj_A 322 DLATAFSIYCG 332 (691)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88877766553
No 51
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=79.02 E-value=1.9 Score=42.40 Aligned_cols=76 Identities=17% Similarity=0.141 Sum_probs=52.1
Q ss_pred eeeCCCCCCCcceeecCCCceEeeCCCCCCCCcchhhhhhhhcC--CceEEEeecCC------ceeeecccccc----cC
Q 010728 152 FNFRCDSAYGPGHAYKSGRSIWTSGIVSCSDHYESRSFLAMSAG--FQTVVFVPAKS------GVVELGSVKLI----PE 219 (502)
Q Consensus 152 ~sF~~G~~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~lA~saG--IqTvvcIPv~~------GVvELGSt~~I----~E 219 (502)
..|+.| .|+.|+++.+|+++++.+....+. |.+... ...| ++.++|||+.. |||.+++...- .+
T Consensus 244 ~~~~~~-~~~~~~~~~~~~~~~i~d~~~~~~--~~~~~~-~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~~~~~f~~~ 319 (368)
T 1mc0_A 244 IRIPAD-QGIAGHVATTGQILNIPDAYAHPL--FYRGVD-DSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKF 319 (368)
T ss_dssp CEECTT-SHHHHHHHHHCCCEEESCSTTCTT--CCCTTH-HHHTCCCCCEEEEEEECTTSCEEEEEEEEEETTSSSCCHH
T ss_pred eeecCC-CceeeeehhhCCEEEecCcccCcc--cchhhh-hccCCccceEEEEeeECCCCcEEEEEEEEECCCCCCCCHH
Confidence 357888 999999999999999987764332 222211 1234 49999999932 89999987653 34
Q ss_pred CHHHHHHHHHHh
Q 010728 220 EQNVVEMVKTVF 231 (502)
Q Consensus 220 d~~lv~~vk~~F 231 (502)
|..+++.+-...
T Consensus 320 d~~ll~~la~~~ 331 (368)
T 1mc0_A 320 DEDLATAFSIYC 331 (368)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 566666555544
No 52
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=76.54 E-value=8.5 Score=33.67 Aligned_cols=35 Identities=9% Similarity=0.042 Sum_probs=33.0
Q ss_pred EEEEEccCCCChHHHHHHHHHcCCCeEEEEEEEec
Q 010728 438 VVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTT 472 (502)
Q Consensus 438 ~I~I~c~~~~~~l~~im~aL~el~L~V~~a~~s~~ 472 (502)
.|+|.|.++.|++.+|+++|.+.++.+..+++...
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~ 36 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI 36 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC
Confidence 48899999999999999999999999999999776
No 53
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=76.39 E-value=4.6 Score=36.89 Aligned_cols=46 Identities=17% Similarity=0.162 Sum_probs=37.2
Q ss_pred EEEEEccCCCChHHHHHHHHHcCCCeEEEEEEEecC--CEEEEEEEEE
Q 010728 438 VVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTE--DKVIHTFSIQ 483 (502)
Q Consensus 438 ~I~I~c~~~~~~l~~im~aL~el~L~V~~a~~s~~~--~~v~~~~~vk 483 (502)
.|.|...+++|.|.+|...|.+.|+.+.+.++.... +....+|++.
T Consensus 5 ~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~ 52 (164)
T 2f1f_A 5 ILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV 52 (164)
T ss_dssp EEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE
T ss_pred EEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe
Confidence 577889999999999999999999999999987654 4444455554
No 54
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=73.40 E-value=16 Score=34.28 Aligned_cols=61 Identities=10% Similarity=0.060 Sum_probs=43.6
Q ss_pred eEEEEEccCCCChHHHHHHHHHcCCCeEEEEEEEecC--CEEEEEEEEEeCCCChHHHHHHHHHHhc
Q 010728 437 AVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTE--DKVIHTFSIQTQSGASEQLKEKLLAALS 501 (502)
Q Consensus 437 ~~I~I~c~~~~~~l~~im~aL~el~L~V~~a~~s~~~--~~v~~~~~vk~~~g~~~~l~e~L~~aLs 501 (502)
-.|.|..++++|.|.+|...|...|+.+.+..+.... +....++++...+ ...++|...|.
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e----~~ieqL~kQL~ 92 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDD----KTIEQIEKQAY 92 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECT----THHHHHHHHHT
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCH----HHHHHHHHHhc
Confidence 3577788999999999999999999999999887543 4445556665433 34444444443
No 55
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=71.48 E-value=1.6 Score=38.71 Aligned_cols=69 Identities=17% Similarity=0.166 Sum_probs=46.4
Q ss_pred CCCcceeecCCCceEeeCCCCCCCCcchhhhhhhhcCCceEEEeecC-----Cceeeecccccc---cCCHHHHHHHHH
Q 010728 159 AYGPGHAYKSGRSIWTSGIVSCSDHYESRSFLAMSAGFQTVVFVPAK-----SGVVELGSVKLI---PEEQNVVEMVKT 229 (502)
Q Consensus 159 ~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~lA~saGIqTvvcIPv~-----~GVvELGSt~~I---~Ed~~lv~~vk~ 229 (502)
.|+.|+++.+|+++.+.+....+ .+.+.......|++.++|||+. -|||.+.+...- .+|..+++.+-.
T Consensus 95 ~~~~~~~~~~~~~~~i~d~~~~~--~~~~~~~~~~~~~~s~l~vPL~~~~~~~GvL~l~~~~~~~f~~~d~~ll~~lA~ 171 (184)
T 3p01_A 95 DPLTNEAIATGQIQVAANIAKDP--KLASISQYQDNGIQSHVVIPITYRNEMLGVLSLQWQQPISLREDELTLIHLSAQ 171 (184)
T ss_dssp CHHHHHHHHHCSCEEESCGGGCH--HHHTCHHHHHHTCCEEEEEEEEETTEEEEEEEEEESSCCCCCHHHHHHHHHHHH
T ss_pred CcHHHHHHhhCCeEEEeccccCc--cccchhHHHHhCccEEEEEEEEECCEEEEEEEeCcCCCCCCCHHHHHHHHHHHH
Confidence 67999999999999997654432 2222223345799999999993 389999765433 235555555544
No 56
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=70.03 E-value=6.7 Score=35.88 Aligned_cols=46 Identities=17% Similarity=0.147 Sum_probs=37.3
Q ss_pred EEEEEccCCCChHHHHHHHHHcCCCeEEEEEEEecC--CEEEEEEEEE
Q 010728 438 VVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTE--DKVIHTFSIQ 483 (502)
Q Consensus 438 ~I~I~c~~~~~~l~~im~aL~el~L~V~~a~~s~~~--~~v~~~~~vk 483 (502)
.|.|...+++|.|.+|...|.+.|+.+.+.++.... +....++++.
T Consensus 6 ~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~ 53 (165)
T 2pc6_A 6 IISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN 53 (165)
T ss_dssp EEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE
T ss_pred EEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe
Confidence 577888999999999999999999999999887544 4445555554
No 57
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=69.91 E-value=7 Score=34.08 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=45.0
Q ss_pred CCCcce----eecCCCceEeeCCCCCCCCcchhhhhhhhcCCceEEEeec-----CCceeeeccccccc---CCHHHHHH
Q 010728 159 AYGPGH----AYKSGRSIWTSGIVSCSDHYESRSFLAMSAGFQTVVFVPA-----KSGVVELGSVKLIP---EEQNVVEM 226 (502)
Q Consensus 159 ~GlpG~----a~~sg~~~Wl~~~~~~~~~~~~R~~lA~saGIqTvvcIPv-----~~GVvELGSt~~I~---Ed~~lv~~ 226 (502)
+|..|. ++.+|+++.+.+....+...+.+..+ ...|++.++|||+ .-|||.+-+...-. ++.++++.
T Consensus 78 ~~~~g~v~~~~~~~~~~~~i~d~~~~~~~~~~~~~~-~~~~~~s~l~vPi~~~~~l~G~l~~~~~~~~~~~~~e~~~l~~ 156 (172)
T 2k2n_A 78 AQSRSISQPESWGLSARVPLGEPLQRPVDPCHVHYL-KSMGVASSLVVPLMHHQELWGLLVSHHAEPRPYSQEELQVVQL 156 (172)
T ss_dssp GCCCCCSCCCSCCCSSCCCCCSSSSCCCCHHHHHHH-HTTTCSEEEECCCSCSSCCCEEEEEEECSCCCCCHHHHHHHHH
T ss_pred ccccccccccccccCCceeccchhhcCCCHHHHHHH-HhcCCeEEEEEEEEECCEEEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 455554 59999999998876544333333333 3689999999998 34899998874332 23344444
Q ss_pred HHH
Q 010728 227 VKT 229 (502)
Q Consensus 227 vk~ 229 (502)
+-.
T Consensus 157 la~ 159 (172)
T 2k2n_A 157 LAD 159 (172)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 58
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=68.91 E-value=10 Score=36.35 Aligned_cols=61 Identities=8% Similarity=0.011 Sum_probs=41.9
Q ss_pred ceEEEEEccCCCChHHHHHHHHHcCCCeEEEEEEEecC----CEEEEEEEEEeCCCChHHHHHHHH
Q 010728 436 DAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTE----DKVIHTFSIQTQSGASEQLKEKLL 497 (502)
Q Consensus 436 ~~~I~I~c~~~~~~l~~im~aL~el~L~V~~a~~s~~~----~~v~~~~~vk~~~g~~~~l~e~L~ 497 (502)
.+.|.|.+.+++|+|.+|+..|.+.+..+.+.+..... +.. ..+++++.+...+.+-++|+
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~-A~I~IEV~d~~Le~LL~kLr 68 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGK-ALIYFEIEGGDFEKILERVK 68 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTE-EEEEEEECSSCHHHHHHHHH
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCE-EEEEEEECCCCHHHHHHHHh
Confidence 46788999999999999999999999999999998864 322 34448887643334444443
No 59
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=66.98 E-value=1.6 Score=43.63 Aligned_cols=61 Identities=11% Similarity=-0.064 Sum_probs=42.9
Q ss_pred eeCCCCCCCcceeecCCCceEeeCCCCCCC-Ccchhhhh-hhhcCCceEEEeecC--C----ceeeeccc
Q 010728 153 NFRCDSAYGPGHAYKSGRSIWTSGIVSCSD-HYESRSFL-AMSAGFQTVVFVPAK--S----GVVELGSV 214 (502)
Q Consensus 153 sF~~G~~GlpG~a~~sg~~~Wl~~~~~~~~-~~~~R~~l-A~saGIqTvvcIPv~--~----GVvELGSt 214 (502)
.++.| .|+.|+++.+|+++++.+....+. ..|.+... +...++++++|||+. + |||.+.+.
T Consensus 75 ~~~~~-~g~~g~v~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~g~~iGvl~l~~~ 143 (398)
T 1ykd_A 75 RIPAD-KGIAGEVATFKQVVNIPFDFYHDPRSIFAQKQEKITGYRTYTMLALPLLSEQGRLVAVVQLLNK 143 (398)
T ss_dssp EEETT-SHHHHHHHHHCCCEEECSCGGGSGGGHHHHHHHHHHCCCCSCEEEEEEECSSCCEEEEEEEEEE
T ss_pred ecCCC-CchhhhhhccCcEEeccchhcccchhhcccccCcccCcCCceEEEEEEECCCCCEEEEEEEecc
Confidence 45778 999999999999999987654211 12222222 223578999999983 2 79999876
No 60
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=66.44 E-value=7.9 Score=34.50 Aligned_cols=76 Identities=12% Similarity=0.165 Sum_probs=50.0
Q ss_pred eeCCCCCCCcceeecCCCceEeeCCCCCCCCcchhhhhhhhcCCceEEEeec-----CCceeeeccccccc---CCHHHH
Q 010728 153 NFRCDSAYGPGHAYKSGRSIWTSGIVSCSDHYESRSFLAMSAGFQTVVFVPA-----KSGVVELGSVKLIP---EEQNVV 224 (502)
Q Consensus 153 sF~~G~~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~lA~saGIqTvvcIPv-----~~GVvELGSt~~I~---Ed~~lv 224 (502)
.++.+ .++.|+++.+++++=+... ..+ ..|.....+...|++.++|+|. .-|||-|++...-. +|..++
T Consensus 54 ~ip~~-~s~~~~v~~~~~~~v~~~~-~~~-~~~~~~~~~~~~~~~S~l~vPL~~~~~~iGvl~l~~~~~~~f~~~d~~~l 130 (165)
T 3o5y_A 54 TIPKE-QSLYWSALDQRQTIFRSLT-DTQ-DNFYEKQYLAILDLKSILVIPIYSKNKRVGVLSIGRKQQIDWSLDDLAFL 130 (165)
T ss_dssp EECST-TCHHHHHHHHTSCEEEESC-CTT-CCCTTHHHHHTTTCCEEEEEEEECSSCEEEEEEEEESSCCCCCHHHHHHH
T ss_pred ccCCc-cCHHHHHHHhCCeEEEcCc-ccc-cccccchHHHhhCCCEEEEeCeeECCEEEEEEEEEeCCCCCCCHHHHHHH
Confidence 45666 6788899999999854322 222 2333334456789999999999 33899999876532 455566
Q ss_pred HHHHHHh
Q 010728 225 EMVKTVF 231 (502)
Q Consensus 225 ~~vk~~F 231 (502)
+.+-+..
T Consensus 131 ~~la~~~ 137 (165)
T 3o5y_A 131 EQLTDHL 137 (165)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555544
No 61
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=62.59 E-value=11 Score=33.75 Aligned_cols=72 Identities=15% Similarity=0.114 Sum_probs=47.3
Q ss_pred CCCcce----eecCCCceEeeCCCCCCCCcchhhhhhhhcCCceEEEeec-----CCceeeecccccc---cCCHHHHHH
Q 010728 159 AYGPGH----AYKSGRSIWTSGIVSCSDHYESRSFLAMSAGFQTVVFVPA-----KSGVVELGSVKLI---PEEQNVVEM 226 (502)
Q Consensus 159 ~GlpG~----a~~sg~~~Wl~~~~~~~~~~~~R~~lA~saGIqTvvcIPv-----~~GVvELGSt~~I---~Ed~~lv~~ 226 (502)
+|..|. ++.+|+|+-+.+....+...+.+..+ ...|++.++|||+ .-|||.+.+...- .+|.++++.
T Consensus 108 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~l-~~~~~~S~l~vPi~~~~~l~GvL~~~~~~~~~~~~~e~~ll~~ 186 (208)
T 2lb5_A 108 AQSRSISQPESWGLSARVPLGEPLQRPVDPCHVHYL-KSMGVASSLVVPLMHHQELWGLLVSHHAEPRPYSQEELQVVQL 186 (208)
T ss_dssp GCCCCCCCSSCCCCCSCCCCCSCSSCCCCHHHHHHH-HHTTCSEEEEEEEEETTEEEEEEEEEESCCCCCCHHHHHHHHH
T ss_pred cccccccccccccccccccccchhhccCCHHHHHHH-HhcCCcEEEEEEEEECCEeEEEEEEeeCCCCCCCHHHHHHHHH
Confidence 455444 79999999887765443333334443 3689999999998 2389999887443 234456665
Q ss_pred HHHHh
Q 010728 227 VKTVF 231 (502)
Q Consensus 227 vk~~F 231 (502)
+-..+
T Consensus 187 la~~~ 191 (208)
T 2lb5_A 187 LADQV 191 (208)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 62
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=59.67 E-value=1.9 Score=48.97 Aligned_cols=78 Identities=12% Similarity=0.069 Sum_probs=0.0
Q ss_pred eeeCCCCCCCcceeecCCCceEeeCCCCCCCCcchhhh-hhhhcCCceEEEeecCC------ceeeeccccc------cc
Q 010728 152 FNFRCDSAYGPGHAYKSGRSIWTSGIVSCSDHYESRSF-LAMSAGFQTVVFVPAKS------GVVELGSVKL------IP 218 (502)
Q Consensus 152 ~sF~~G~~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~-lA~saGIqTvvcIPv~~------GVvELGSt~~------I~ 218 (502)
..|+.| .|+.|.++.+|+++.+.+....+ .|.... .....++++++|+|+.. |||.+.+... -.
T Consensus 224 ~~~p~~-~gi~g~v~~~g~pv~I~D~~~dp--~f~~~~~~~~~~~~~S~L~vPL~~~~g~viGvL~l~~~~~~~~~~ft~ 300 (878)
T 3bjc_A 224 IRLEWN-KGIVGHVAALGEPLNIKDAYEDP--RFNAEVDQITGYKTQSILCMPIKNHREEVVGVAQAINKKSGNGGTFTE 300 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeeCC-ccHHHHHHhcCceEEeCCcccCc--ccccccccccCCccceEEEEeeEcCCCCEEEEEEEEecCCCCCCCCCH
Confidence 357889 99999999999999998765422 122111 11235688999999954 8999886542 24
Q ss_pred CCHHHHHHHHHHhc
Q 010728 219 EEQNVVEMVKTVFE 232 (502)
Q Consensus 219 Ed~~lv~~vk~~F~ 232 (502)
+|..+++.+-..+.
T Consensus 301 ~D~~lL~~lA~~~a 314 (878)
T 3bjc_A 301 KDEKDFAAYLAFCG 314 (878)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666555543
No 63
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=56.72 E-value=23 Score=26.95 Aligned_cols=43 Identities=21% Similarity=0.232 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010728 362 ERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQMKIRVLETEKDMSN 417 (502)
Q Consensus 362 ER~RR~kln~~f~~LrslvP~~~K~dKasiL~~aI~YIk~Lq~~v~~Le~~~~~l~ 417 (502)
||++|.+...+.++-++ =..-..|+.+|+.+++.|+.+...|.
T Consensus 1 Ekr~rrrerNR~AA~rc-------------R~rKk~~~~~Le~~v~~L~~~n~~L~ 43 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC-------------RNRRRELTDTLQAETDQLEDEKSALQ 43 (63)
T ss_dssp CHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677777777765 13445777777777777777665543
No 64
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=53.69 E-value=2.7 Score=47.66 Aligned_cols=77 Identities=8% Similarity=-0.001 Sum_probs=0.0
Q ss_pred eeeCCCCCCCcceeecCCCceEeeCCCCCCCCcchhhhhhh-h---cCCceEEEeecC----C---ceeeeccccc----
Q 010728 152 FNFRCDSAYGPGHAYKSGRSIWTSGIVSCSDHYESRSFLAM-S---AGFQTVVFVPAK----S---GVVELGSVKL---- 216 (502)
Q Consensus 152 ~sF~~G~~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~lA~-s---aGIqTvvcIPv~----~---GVvELGSt~~---- 216 (502)
..++.| .|+.|+++.+|+++++.+....+ .|.+..... . .+++.++|+|+. + |||+|.+...
T Consensus 406 ~~~p~~-~gi~g~v~~~g~~v~i~D~~~d~--r~~~~~~~~~g~~~~~~rS~L~vPL~~~~~g~viGVL~l~~~~~~~~G 482 (878)
T 3bjc_A 406 DANKIN-YMYAQYVKNTMEPLNIPDVSKDK--RFPWTTENTGNVNQQCIRSLLCTPIKNGKKNKVIGVCQLVNKMEENTG 482 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccchh-hhHHHHHhhcCCeeeecCccccc--ccccccccccCccccccceEEEEEEecCCCCcEEEEEEEEEcCCCccc
Confidence 357788 99999999999999998765422 233222221 1 469999999982 2 8999976543
Q ss_pred -----ccCCHHHHHHHHHHh
Q 010728 217 -----IPEEQNVVEMVKTVF 231 (502)
Q Consensus 217 -----I~Ed~~lv~~vk~~F 231 (502)
-.+|..+++.+-...
T Consensus 483 ~~~~Ft~~d~~lL~~lA~~a 502 (878)
T 3bjc_A 483 KVKPFNRNDEQFLEAFVIFC 502 (878)
T ss_dssp --------------------
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 234555555544443
No 65
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=51.76 E-value=21 Score=38.93 Aligned_cols=71 Identities=14% Similarity=0.114 Sum_probs=46.3
Q ss_pred eeCCCCCCCcceeecCCCceEeeCCCCCCCCcchhhhhhhhcCCceEEEeecC-C------ceeeeccccc----ccCCH
Q 010728 153 NFRCDSAYGPGHAYKSGRSIWTSGIVSCSDHYESRSFLAMSAGFQTVVFVPAK-S------GVVELGSVKL----IPEEQ 221 (502)
Q Consensus 153 sF~~G~~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~lA~saGIqTvvcIPv~-~------GVvELGSt~~----I~Ed~ 221 (502)
.++.| |+.|+++.+|+|+++.+....+ .+.. .......+++++|+|+. + |||.+..... -.+|.
T Consensus 76 ~~p~~--Gi~g~v~~~~~pv~i~d~~~~~--~~~~-~~~~~~~~~S~L~vPI~~~~~g~viGvL~l~~~~~~~~ft~~d~ 150 (691)
T 3ibj_A 76 SFPLT--GCLGQVVEDKKSIQLKDLTSED--VQQL-QSMLGCELQAMLCVPVISRATDQVVALACAFNKLEGDLFTDEDE 150 (691)
T ss_dssp EEECC--SSSHHHHHHCCCEEGGGSCHHH--HHHH-HHHHTSCCSCEEEEEEECSSSCSEEEEEEEESBSSSCCCCTTHH
T ss_pred ecCCc--cHHHHHHHHCCeEEeccchhcc--cccc-ccccCCccceEEEEEeEcCCCCcEEEEEEEEcCCCCCCCCHHHH
Confidence 56777 8999999999999997654311 1111 11223568999999993 3 7998775432 34566
Q ss_pred HHHHHHH
Q 010728 222 NVVEMVK 228 (502)
Q Consensus 222 ~lv~~vk 228 (502)
.+++.+-
T Consensus 151 ~lL~~la 157 (691)
T 3ibj_A 151 HVIQHCF 157 (691)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666543
No 66
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=37.25 E-value=25 Score=25.00 Aligned_cols=21 Identities=19% Similarity=0.507 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 010728 397 TYITDLQMKIRVLETEKDMSN 417 (502)
Q Consensus 397 ~YIk~Lq~~v~~Le~~~~~l~ 417 (502)
.|+.+|+.++++|+.+...|+
T Consensus 3 aYl~eLE~r~k~le~~naeLE 23 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELE 23 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 488888888888887766655
No 67
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=37.01 E-value=93 Score=28.17 Aligned_cols=95 Identities=17% Similarity=0.241 Sum_probs=52.9
Q ss_pred HHHHHHHHHhHhhhhCCCccccccCCCCcceeEEEEEeee-------eeeCCCCCCCcceeecCCCceEeeCCCCCCCCc
Q 010728 112 EEVKKRVLQKLHACFGGLENYASRFDGVSGVEMFYLTSMY-------FNFRCDSAYGPGHAYKSGRSIWTSGIVSCSDHY 184 (502)
Q Consensus 112 ~~~rk~~l~~L~~l~~~~~~~al~~~~~td~Ewfyl~sm~-------~sF~~G~~GlpG~a~~sg~~~Wl~~~~~~~~~~ 184 (502)
.++++++++.....++-....-.-.|. |-|.++.++.- .-...| +|+.| |.|..
T Consensus 30 ~~~l~~il~~a~~~~~~d~gsL~l~d~--~~~l~~~aa~G~~~~l~~lr~~~~-~~~~g-------pr~~~--------- 90 (160)
T 3cit_A 30 EAMRKCVLQRACAFVAMDHGLLLEWGA--DNGVQTTARHGSKERLSTLETTAD-PLAIG-------PQWLE--------- 90 (160)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEECC----CCCEEEEEESCHHHHTTSCCCCC-TTCCS-------CEEEE---------
T ss_pred HHHHHHHHHHHHHHhccCeeEEEEEcC--CCceeeeeccCchhhhhhhhcccc-ccccc-------ccccc---------
Confidence 456777777765555433211111121 23445555553 335667 77777 78872
Q ss_pred chhhhhhhhcCCceEEEeec--CC----ceeeecccccc----cCCHHHHHHHHHHh
Q 010728 185 ESRSFLAMSAGFQTVVFVPA--KS----GVVELGSVKLI----PEEQNVVEMVKTVF 231 (502)
Q Consensus 185 ~~R~~lA~saGIqTvvcIPv--~~----GVvELGSt~~I----~Ed~~lv~~vk~~F 231 (502)
.-.+-.+.|+|||. .+ ||+++.....+ .||.++++.+-.+.
T Consensus 91 ------~tg~~t~svl~vPL~~~~g~~~Gvlql~N~~~~~~f~~eD~e~l~lLA~~~ 141 (160)
T 3cit_A 91 ------RPGTHLPCVLLLPLRGADEGSFGTLVLANSVAISAPDGEDIESLQLLATLL 141 (160)
T ss_dssp ------CTTSSSCEEEEEEEECSSSSEEEEEEEEESSCCCCCCHHHHHHHHHHHHHH
T ss_pred ------ccCcccceeEEEeeecCCCcEEEEEEEeccCCCCCCCHHHHHHHHHHHHHH
Confidence 01223568999999 22 89999666555 34666666554443
No 68
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=36.51 E-value=1.7e+02 Score=24.82 Aligned_cols=46 Identities=15% Similarity=0.236 Sum_probs=32.6
Q ss_pred EEEEccCCCChHHHHHHHHHcCCCeEEEEEEEecCCEEEEEEEEEeCC
Q 010728 439 VRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTEDKVIHTFSIQTQS 486 (502)
Q Consensus 439 I~I~c~~~~~~l~~im~aL~el~L~V~~a~~s~~~~~v~~~~~vk~~~ 486 (502)
|-+..+.++|.+.+++++|.+.|+.+...-++..+... .+.++.++
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~--~~~i~~~d 120 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVA--NVVIRPSN 120 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEE--EEEEEESC
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcE--EEEEEeCC
Confidence 55677899999999999999999999665444233443 33345543
No 69
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=32.85 E-value=53 Score=22.76 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=26.5
Q ss_pred CChhcHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010728 386 MDKASLLGDAITYITDLQMKIRVLETEKDMS 416 (502)
Q Consensus 386 ~dKasiL~~aI~YIk~Lq~~v~~Le~~~~~l 416 (502)
|.-+..|+++=+-|..|+.+++.|+.++..+
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556789999999999999999999988653
No 70
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=31.93 E-value=1.7e+02 Score=24.70 Aligned_cols=37 Identities=8% Similarity=0.121 Sum_probs=30.6
Q ss_pred EEEEEccCCCChHHHHHHHHHcCCCeEEEEEEEecCC
Q 010728 438 VVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTED 474 (502)
Q Consensus 438 ~I~I~c~~~~~~l~~im~aL~el~L~V~~a~~s~~~~ 474 (502)
.|.|..++++|.+.+|...|.+.|+.|.........+
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~ 44 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENAD 44 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSS
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCC
Confidence 3566778999999999999999999998887665444
No 71
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=31.77 E-value=81 Score=27.91 Aligned_cols=52 Identities=12% Similarity=0.135 Sum_probs=36.0
Q ss_pred cccCCceEEEEE-ccCCCChHHHHHHHHHcCCCeEEEEEEEec-CCEEEEEEEE
Q 010728 431 QPRHEDAVVRVS-CPLDDHPVSSVMKTFSEHQIVAQESNVSTT-EDKVIHTFSI 482 (502)
Q Consensus 431 ~i~~~~~~I~I~-c~~~~~~l~~im~aL~el~L~V~~a~~s~~-~~~v~~~~~v 482 (502)
....+-+.|.|. -+.++|.+.+|+++|.+.++.|.....+.. ++..-.+|++
T Consensus 20 a~~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v 73 (167)
T 2re1_A 20 AFDKNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTV 73 (167)
T ss_dssp EEECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEE
T ss_pred EecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEE
Confidence 344566788887 488899999999999999999877665432 2333334555
No 72
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=31.21 E-value=33 Score=25.75 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 010728 397 TYITDLQMKIRVLETEKDMSN 417 (502)
Q Consensus 397 ~YIk~Lq~~v~~Le~~~~~l~ 417 (502)
.||..|+.+++.||..+..+.
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~ 64 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLK 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888776654
No 73
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=31.07 E-value=59 Score=22.69 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010728 392 LGDAITYITDLQMKIRVLETEKDMSN 417 (502)
Q Consensus 392 L~~aI~YIk~Lq~~v~~Le~~~~~l~ 417 (502)
+.+--+||++|+++..+|..-++.+.
T Consensus 5 vkelknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 45566899999999988887665543
No 74
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=30.96 E-value=32 Score=26.11 Aligned_cols=21 Identities=5% Similarity=0.017 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 010728 397 TYITDLQMKIRVLETEKDMSN 417 (502)
Q Consensus 397 ~YIk~Lq~~v~~Le~~~~~l~ 417 (502)
.||..|+++|+.|+..+..+.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999887654
No 75
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=29.76 E-value=1.2e+02 Score=27.72 Aligned_cols=76 Identities=9% Similarity=0.227 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHh-hhc--ccCCCCCCCcccccccCCceEEEEEccCC------CChHHHHHHHHHcCCCeEEEE
Q 010728 397 TYITDLQMKIRVLETEKD-MSN--NKQKQISVPEIDFQPRHEDAVVRVSCPLD------DHPVSSVMKTFSEHQIVAQES 467 (502)
Q Consensus 397 ~YIk~Lq~~v~~Le~~~~-~l~--~~~~~~~~~~V~V~i~~~~~~I~I~c~~~------~~~l~~im~aL~el~L~V~~a 467 (502)
++..+|-++|..+-.... .++ -.+..+-..+|.+++.++.+.|.+..... +.-+.++-++|.+.||.+..+
T Consensus 69 ~w~qqL~qqI~~~~~~g~q~a~IrL~PpeLG~l~V~l~~~~~q~~v~f~a~~~~vReaLe~~lp~LRe~La~qGi~L~~v 148 (169)
T 2rrl_A 69 EWQQTFSQQVMLFTRQGQQSAQLRLHPEELGQVHISLKLDDNQAQLQMVSPHSHVRAALEAALPMLRTQLAESGIQLGQS 148 (169)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEECCSSGGGCCEEEEEEEETTEEEEEEECCSSHHHHHHHHTHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHHHHHHhCCceEEEEEECccccCcEEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHcCCCeeeE
Confidence 555566666665543321 111 11223334577778889999999988764 234888999999999999999
Q ss_pred EEEec
Q 010728 468 NVSTT 472 (502)
Q Consensus 468 ~~s~~ 472 (502)
+|+..
T Consensus 149 ~Vs~~ 153 (169)
T 2rrl_A 149 SISSE 153 (169)
T ss_dssp EEESS
T ss_pred EEecC
Confidence 99864
No 76
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=28.19 E-value=44 Score=24.84 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 010728 397 TYITDLQMKIRVLETEKDMSN 417 (502)
Q Consensus 397 ~YIk~Lq~~v~~Le~~~~~l~ 417 (502)
.||.+|+.+|..|+.+...|.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~ 42 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLI 42 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999998876654
No 77
>3ld7_A LIN0431 protein; DUF1312, PF07009, LKR112, NESG, structural genomics, PSI-2, protein structure initiative; 1.55A {Listeria innocua}
Probab=27.03 E-value=26 Score=29.45 Aligned_cols=44 Identities=14% Similarity=0.000 Sum_probs=30.6
Q ss_pred CCCcceeecCCCceEeeCCCCCCCCcchhhhhhhhcCCceEEEeec
Q 010728 159 AYGPGHAYKSGRSIWTSGIVSCSDHYESRSFLAMSAGFQTVVFVPA 204 (502)
Q Consensus 159 ~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~lA~saGIqTvvcIPv 204 (502)
.|..-..-..+.-+|+..++ |+.+.|.+.---. -.=|||||+|-
T Consensus 39 ~G~~n~ieI~dg~vrv~es~-CPdkiCv~~GwIs-~~Gq~IVCLPn 82 (101)
T 3ld7_A 39 GAQYNLMEVDGERIRIKEDN-SPDQVGVKMGWKS-KAGDTIVCLPH 82 (101)
T ss_dssp TTCEEEEEEETTEEEEEEEC-CSSCHHHHHCCBC-STTCEEEETTT
T ss_pred CCCEEEEEEECCEEEEEECC-CCCcccccCCCcC-CCCCEEEEcCC
Confidence 34445677778889998776 7888898652221 23489999985
No 78
>2kpp_A LIN0431 protein; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG, function; NMR {Listeria innocua}
Probab=25.42 E-value=33 Score=29.45 Aligned_cols=42 Identities=21% Similarity=0.159 Sum_probs=29.3
Q ss_pred cceeecCCCceEeeCCCCCCCCcchhhhhhhhcCCceEEEeecC
Q 010728 162 PGHAYKSGRSIWTSGIVSCSDHYESRSFLAMSAGFQTVVFVPAK 205 (502)
Q Consensus 162 pG~a~~sg~~~Wl~~~~~~~~~~~~R~~lA~saGIqTvvcIPv~ 205 (502)
.-..-..+.-+|+..++ |+.+.|.+.---...| |||||+|-.
T Consensus 42 ~n~IeIkdg~vrv~es~-CPdkiCv~~GwIsk~G-q~IVCLPnk 83 (114)
T 2kpp_A 42 YNLMEVDGERIRIKEDN-SPDQVGVKMGWKSKAG-DTIVCLPHK 83 (114)
T ss_dssp EEEEEEESSCEEEEEEC-CSSCHHHHHCSBCSTT-CEEEEGGGT
T ss_pred EEEEEEECCEEEEEECC-CCCeehhhcCCcCCCC-CEEEEcCCE
Confidence 34466667778887775 7888998763333345 999999863
No 79
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=24.99 E-value=52 Score=25.84 Aligned_cols=20 Identities=10% Similarity=0.125 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 010728 396 ITYITDLQMKIRVLETEKDM 415 (502)
Q Consensus 396 I~YIk~Lq~~v~~Le~~~~~ 415 (502)
-.||++|+.+|.+|+.....
T Consensus 28 ~~~i~~LE~~v~~le~~~~~ 47 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSS 47 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47889999998888865544
No 80
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=24.47 E-value=1.2e+02 Score=25.17 Aligned_cols=42 Identities=29% Similarity=0.365 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCChhcHHHHHHHHHHHHHHHHHHHHHHH
Q 010728 364 QRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQMKIRVLETEK 413 (502)
Q Consensus 364 ~RR~kln~~f~~LrslvP~~~K~dKasiL~~aI~YIk~Lq~~v~~Le~~~ 413 (502)
+.|.|..+.|..|.+.+ .-..+.|=+||..|+++++.|+...
T Consensus 45 qkr~kFee~fe~l~s~l--------~~f~e~a~e~vp~L~~~i~vle~~~ 86 (94)
T 3fx7_A 45 ARRDKFSEVLDNLKSTF--------NEFDEAAQEQIAWLKERIRVLEEDY 86 (94)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHhhHHHhHHHHHHHHHhHHHH
Confidence 44556777777776654 2346688899999999999998753
No 81
>4esn_A Hypothetical protein; protein of PF07009 family, DUF1312, structural genomics, JOI for structural genomics, JCSG; HET: PE4; 2.20A {Ruminococcus gnavus}
Probab=22.31 E-value=18 Score=30.58 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=30.4
Q ss_pred ceeecCCCceEeeCCCCCCCCcchhhhhhhhcCCceEEEeecCCceeee
Q 010728 163 GHAYKSGRSIWTSGIVSCSDHYESRSFLAMSAGFQTVVFVPAKSGVVEL 211 (502)
Q Consensus 163 G~a~~sg~~~Wl~~~~~~~~~~~~R~~lA~saGIqTvvcIPv~~GVvEL 211 (502)
-..-..+.-+|+..++ |+.+.|.+.---...| |||||+|-.- |||+
T Consensus 46 n~IeI~dg~vrv~es~-CPdkiCv~~GwIs~~G-q~IVCLPnkl-vI~I 91 (104)
T 4esn_A 46 NRLRIQNGQAKMEWAD-CPDQLCVHQKAISRTG-ESIICLPNQV-VVSV 91 (104)
T ss_dssp EEEEEETTEEEEEEEC-CSSCHHHHSCCBCSTT-CEEEETTTTE-EEEE
T ss_pred EEEEEECCEEEEEECC-CCCcchhhCCCcCCCC-CEEEEcCCEE-EEEE
Confidence 3455666778887765 7888898764333455 9999998532 3454
No 82
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=21.50 E-value=1.4e+02 Score=24.16 Aligned_cols=25 Identities=20% Similarity=0.126 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 010728 392 LGDAITYITDLQMKIRVLETEKDMS 416 (502)
Q Consensus 392 L~~aI~YIk~Lq~~v~~Le~~~~~l 416 (502)
|.+|++=-+.|+.+|..|+.++..+
T Consensus 41 L~eaL~EN~~Lh~~ie~l~eEi~~l 65 (83)
T 1uii_A 41 LYEALKENEKLHKEIEQKDNEIARL 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666555433
No 83
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=21.42 E-value=1.7e+02 Score=26.04 Aligned_cols=53 Identities=13% Similarity=0.136 Sum_probs=35.7
Q ss_pred ccCCceEEEEE-ccCCCChHHHHHHHHHcCCCeEEEEEEEec---CCEEEEEEEEEe
Q 010728 432 PRHEDAVVRVS-CPLDDHPVSSVMKTFSEHQIVAQESNVSTT---EDKVIHTFSIQT 484 (502)
Q Consensus 432 i~~~~~~I~I~-c~~~~~~l~~im~aL~el~L~V~~a~~s~~---~~~v~~~~~vk~ 484 (502)
...+-+.|.|. .+.++|.+.+|++.|.+.++.|.....+.. ++..-.+|++..
T Consensus 11 ~~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~ 67 (178)
T 2dtj_A 11 TDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPR 67 (178)
T ss_dssp EECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEH
T ss_pred ecCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcc
Confidence 44566778873 578899999999999999977665544433 223233466644
No 84
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=21.06 E-value=2.6e+02 Score=27.36 Aligned_cols=63 Identities=10% Similarity=0.111 Sum_probs=45.3
Q ss_pred CceEEEEEccCCCChHHHHHHHHHcCCCeEEEEEEEecCC-EEEEEEEEEeCCC-ChHHHHHHHH
Q 010728 435 EDAVVRVSCPLDDHPVSSVMKTFSEHQIVAQESNVSTTED-KVIHTFSIQTQSG-ASEQLKEKLL 497 (502)
Q Consensus 435 ~~~~I~I~c~~~~~~l~~im~aL~el~L~V~~a~~s~~~~-~v~~~~~vk~~~g-~~~~l~e~L~ 497 (502)
+...|-+..++++|.|.++|..|...|+......+-...+ .--+.|-|.+++. +...+++.|.
T Consensus 199 ~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~~~d~~v~~aL~ 263 (283)
T 2qmx_A 199 QKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGHREDQNVHNALE 263 (283)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESCTTSHHHHHHHH
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecCCCcHHHHHHHH
Confidence 3445556667899999999999999999999999887543 2357777877653 2234444443
Done!