BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010729
(502 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A01|A Chain A, Crystal Structure Of The H-Translocating Pyrophosphatase
pdb|4A01|B Chain B, Crystal Structure Of The H-Translocating Pyrophosphatase
Length = 766
Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/430 (83%), Positives = 401/430 (93%)
Query: 1 MGSTLLSELATEILVPVCAVVGIIFSLVQWFIVSRVRLTHERPPSSNSDKKNGFNDYLIE 60
MG+ +L +L TEIL+PVCAV+GI F+L QW +VS+V+L+ R S N+ KNG+NDYLIE
Sbjct: 1 MGAAILPDLGTEILIPVCAVIGIAFALFQWLLVSKVKLSAVRDASPNAAAKNGYNDYLIE 60
Query: 61 EEEGINDQSVVAKCADIQSAISEGATSFLFTEYQYVGVFMIAFAILIFVFLGSVEGFSTK 120
EEEGIND +VV KCA+IQ+AISEGATSFLFTEY+YVG+FM+AFAILIF+FLGSVEGFST
Sbjct: 61 EEEGINDHNVVVKCAEIQNAISEGATSFLFTEYKYVGIFMVAFAILIFLFLGSVEGFSTS 120
Query: 121 GQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGMKIATYANARTTLEARKSVG 180
QAC+YD+ K CKPALATA FSTVSFLLG +TS++SGFLGMKIATYANARTTLEARK VG
Sbjct: 121 PQACSYDKTKTCKPALATAIFSTVSFLLGGVTSLVSGFLGMKIATYANARTTLEARKGVG 180
Query: 181 KAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGDDWEGLFEAITGYGLGGSSMALF 240
KAFI AFRSGAVMGFLLAANGLLVL+IAINLFK+YYGDDW GLFEAITGYGLGGSSMALF
Sbjct: 181 KAFITAFRSGAVMGFLLAANGLLVLYIAINLFKIYYGDDWGGLFEAITGYGLGGSSMALF 240
Query: 241 GRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYA 300
GRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYA
Sbjct: 241 GRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYA 300
Query: 301 ESSCAALVVASISSFGINHEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPS 360
ESSCAALVVASISSFG+NHE T+MLYPL++SS+GILVCL+TTLFATD FE+KAVKEIEP+
Sbjct: 301 ESSCAALVVASISSFGLNHELTAMLYPLIVSSVGILVCLLTTLFATDFFEIKAVKEIEPA 360
Query: 361 LKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGF 420
LKKQL+ISTVLMT+G+A+VS++ LP+SFTI+NFG QK VK+WQLFLCVAVGLWAGLIIGF
Sbjct: 361 LKKQLVISTVLMTIGVAVVSFVALPTSFTIFNFGVQKDVKSWQLFLCVAVGLWAGLIIGF 420
Query: 421 VTEYYTSNAY 430
VTEYYTSNAY
Sbjct: 421 VTEYYTSNAY 430
>pdb|4AV3|A Chain A, Crystal Structure Of Thermotoga Maritima Sodium Pumping
Membrane Integral Pyrophosphatase With Metal Ions In
Active Site
pdb|4AV3|B Chain B, Crystal Structure Of Thermotoga Maritima Sodium Pumping
Membrane Integral Pyrophosphatase With Metal Ions In
Active Site
pdb|4AV6|A Chain A, Crystal Structure Of Thermotoga Maritima Sodium Pumping
Membrane Integral Pyrophosphatase At 4 A In Complex With
Phosphate And Magnesium
pdb|4AV6|B Chain B, Crystal Structure Of Thermotoga Maritima Sodium Pumping
Membrane Integral Pyrophosphatase At 4 A In Complex With
Phosphate And Magnesium
Length = 735
Score = 181 bits (459), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 135/393 (34%), Positives = 199/393 (50%), Gaps = 71/393 (18%)
Query: 73 KCADIQSAISEGATSFLFTEYQYVGVFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMC 132
+ +I S I GA SFL E + + I AIL+ +F
Sbjct: 43 RMKEISSYIRSGADSFLAHETKAIFKVAIVIAILLMIF---------------------- 80
Query: 133 KPALATAAFSTVSFLLGAITSVLSGFLGMKIATYANARTTLEAR--KSVGKAFIVAFRSG 190
T + V+FLLGA+ S +G +GMK+AT AN R AR K +G A VA++ G
Sbjct: 81 -----TTWQTGVAFLLGAVMSASAGIVGMKMATRANVRVAEAARTTKKIGPALKVAYQGG 135
Query: 191 AVMGFLLAANGLLVLFIAINLFKLYYGD--------DWEGL-----FEAITGYGLGGSSM 237
+VMG + LL L + +F + G +W G+ ++GY LG S +
Sbjct: 136 SVMGLSVGGFALLGLVLVYLIFGKWMGQVDNLNIYTNWLGINFVPFAMTVSGYALGCSII 195
Query: 238 ALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFG 297
A+F RVGGG+YTKAAD+ ADLVGK E N+PEDDPRNPA IADNVGDNVGD+AG+G+DL
Sbjct: 196 AMFDRVGGGVYTKAADMAADLVGKTELNLPEDDPRNPATIADNVGDNVGDVAGLGADLLE 255
Query: 298 SYAESSCAALVVAS------ISSFGIN--HEFTS------MLYPLLISSIGILVCLITTL 343
S+ + +++++AS + G N H+ + YP+ + +G+ ++ L
Sbjct: 256 SFVGAIVSSIILASYMFPIYVQKIGENLVHQVPKETIQALISYPIFFALVGLGCSMLGIL 315
Query: 344 FATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTI----YNFGAQKVV 399
+ + K + L L S +L V A +++ L + + FGA +
Sbjct: 316 Y---VIVKKPSDNPQRELNISLWTSALLTVVLTAFLTYFYLKDLQGLDVLGFRFGA---I 369
Query: 400 KNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYRY 432
W +G+++G++IGF EYYTS YRY
Sbjct: 370 SPW---FSAIIGIFSGILIGFWAEYYTS--YRY 397
>pdb|1LTM|A Chain A, Accelerated X-ray Structure Elucidation Of A 36 Kda
Muramidase/transglycosylase Using Warp
Length = 320
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 368 STVLMTVGIAIVSWIGLPSSFTI--YNFGAQKVVKNWQLFLCVAV 410
S + + VG W GLP+ +TI YN + WQL VA+
Sbjct: 272 SLLRLDVGTGYQYWYGLPNFYTITRYNHSTHYAMAVWQLGQAVAL 316
>pdb|1QUS|A Chain A, 1.7 A Resolution Structure Of The Soluble Lytic
Transglycosylase Slt35 From Escherichia Coli
pdb|1QUT|A Chain A, The Soluble Lytic Transglycosylase Slt35 From Escherichia
Coli In Complex With N-Acetylglucosamine
pdb|1QDR|A Chain A, 2.1 A Resolution Structure Of Escherichia Coli Lytic
Transglycosylase Slt35
pdb|1QDT|A Chain A, 2.1 A Resolution Structure Of Escherichia Coli Lytic
Transglycoyslase Slt35 In Complex With Calcium
pdb|1D0K|A Chain A, The Escherichia Coli Lytic Transglycosylase Slt35 In
Complex With Two Murodipeptides
(Glcnac-Murnac-L-Ala-D-Glu)
pdb|1D0L|A Chain A, The Escherichia Coli Lytic Transglycosylase Slt35 In
Complex With Bulgecin A
pdb|1D0M|A Chain A, The Escherichia Coli Lytic Transglycosylase Slt35 In
Complex With Bulgecin A And (Glcnac)2
Length = 322
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 368 STVLMTVGIAIVSWIGLPSSFTI--YNFGAQKVVKNWQLFLCVAV 410
S + + VG W GLP+ +TI YN + WQL VA+
Sbjct: 274 SLLRLDVGTGYQYWYGLPNFYTITRYNHSTHYAMAVWQLGQAVAL 318
>pdb|2IPA|B Chain B, Solution Structure Of Trx-Arsc Complex
Length = 139
Score = 28.5 bits (62), Expect = 8.4, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 213 KLYYGDDWEGLFEAITGYGLGGSSMALFGRVGGGIYTKAADV-------GADLVGKVERN 265
K Y GD+W+ I +GL +++ VG I + +D+ ADLV + +
Sbjct: 25 KQYLGDEWKVYSAGIEAHGLNPNAVKAMKEVGIDISNQTSDIIDSDILNNADLVVTLSGD 84
Query: 266 IPEDDPRNP 274
+ P P
Sbjct: 85 AADKCPMTP 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,446,513
Number of Sequences: 62578
Number of extensions: 525453
Number of successful extensions: 1404
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1396
Number of HSP's gapped (non-prelim): 9
length of query: 502
length of database: 14,973,337
effective HSP length: 103
effective length of query: 399
effective length of database: 8,527,803
effective search space: 3402593397
effective search space used: 3402593397
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)