Query 010729
Match_columns 502
No_of_seqs 153 out of 749
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 03:54:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010729.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010729hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02255 H(+) -translocating i 100.0 1E-132 2E-137 1082.4 44.1 460 3-462 1-472 (765)
2 TIGR01104 V_PPase vacuolar-typ 100.0 6E-126 1E-130 1023.6 38.9 396 11-462 3-409 (697)
3 PLN02277 H(+) -translocating i 100.0 1E-123 2E-128 1011.5 39.4 404 18-473 2-427 (730)
4 PF03030 H_PPase: Inorganic H+ 100.0 1E-121 3E-126 995.7 29.0 390 19-472 1-403 (682)
5 PRK00733 hppA membrane-bound p 100.0 3E-119 6E-124 971.2 35.3 364 61-472 4-378 (666)
6 COG3808 OVP1 Inorganic pyropho 100.0 2E-119 3E-124 942.9 32.0 388 11-462 5-405 (703)
7 PF12670 DUF3792: Protein of u 71.2 60 0.0013 29.0 10.5 102 298-417 14-115 (116)
8 PF03030 H_PPase: Inorganic H+ 69.8 21 0.00046 41.3 9.0 138 278-425 214-354 (682)
9 PRK11677 hypothetical protein; 68.6 5.8 0.00013 37.0 3.6 34 405-438 3-36 (134)
10 COG3104 PTR2 Dipeptide/tripept 68.1 73 0.0016 35.8 12.4 27 403-429 249-275 (498)
11 PF08006 DUF1700: Protein of u 58.2 1.5E+02 0.0033 27.9 11.3 22 62-83 38-62 (181)
12 TIGR00271 uncharacterized hydr 51.9 1.9E+02 0.0042 28.1 10.9 17 401-417 100-116 (175)
13 COG3105 Uncharacterized protei 51.7 17 0.00037 34.0 3.5 31 403-433 6-36 (138)
14 COG4214 XylH ABC-type xylose t 46.5 1E+02 0.0023 33.5 8.8 106 85-193 231-338 (394)
15 COG4709 Predicted membrane pro 41.8 1.1E+02 0.0025 30.4 7.6 25 405-429 154-178 (195)
16 PF06800 Sugar_transport: Suga 39.7 3.6E+02 0.0077 28.1 11.2 100 329-444 104-203 (269)
17 PF00957 Synaptobrevin: Synapt 39.5 99 0.0021 25.9 6.1 40 71-110 40-83 (89)
18 PRK01844 hypothetical protein; 39.4 69 0.0015 27.2 5.0 23 13-35 8-30 (72)
19 PRK06696 uridine kinase; Valid 38.7 12 0.00026 36.2 0.5 13 266-278 207-219 (223)
20 PF06295 DUF1043: Protein of u 38.2 29 0.00063 31.7 2.8 25 408-432 2-26 (128)
21 PF03806 ABG_transport: AbgT p 37.9 6.5E+02 0.014 28.6 15.8 79 360-443 252-334 (502)
22 KOG0793 Protein tyrosine phosp 37.8 15 0.00032 42.8 1.0 16 265-280 794-809 (1004)
23 PF11457 DUF3021: Protein of u 37.8 1.8E+02 0.0039 26.0 7.8 34 403-436 42-75 (136)
24 PF04911 ATP-synt_J: ATP synth 37.2 14 0.0003 29.7 0.5 7 269-275 39-45 (54)
25 COG5336 Uncharacterized protei 35.6 45 0.00097 30.6 3.5 35 402-438 46-80 (116)
26 TIGR03434 ADOP Acidobacterial 34.3 3.5E+02 0.0076 30.9 11.2 86 71-169 705-796 (803)
27 TIGR00400 mgtE Mg2+ transporte 31.5 2.5E+02 0.0054 30.6 9.1 95 323-425 316-415 (449)
28 PF14393 DUF4422: Domain of un 31.2 24 0.00053 35.6 1.3 19 271-289 30-48 (231)
29 TIGR00819 ydaH p-Aminobenzoyl- 31.1 8.3E+02 0.018 27.8 16.0 38 401-443 304-341 (513)
30 PF07331 TctB: Tripartite tric 30.5 3.8E+02 0.0083 23.7 14.0 49 294-342 3-53 (141)
31 PF01988 VIT1: VIT family; In 29.6 4.5E+02 0.0097 25.7 9.7 41 402-444 161-201 (213)
32 COG1422 Predicted membrane pro 28.8 2.3E+02 0.005 28.4 7.5 34 66-99 95-128 (201)
33 PRK00523 hypothetical protein; 27.9 1.3E+02 0.0029 25.5 4.9 22 14-35 10-31 (72)
34 TIGR01185 devC DevC protein. T 27.7 4.6E+02 0.01 27.9 10.1 35 71-105 285-320 (380)
35 KOG0860 Synaptobrevin/VAMP-lik 24.8 2.1E+02 0.0046 26.4 6.0 22 72-93 60-87 (116)
36 PF14362 DUF4407: Domain of un 24.0 3.6E+02 0.0077 27.5 8.2 28 405-432 46-73 (301)
37 COG3086 RseC Positive regulato 23.4 30 0.00064 33.1 0.3 11 261-271 64-74 (150)
38 TIGR00341 conserved hypothetic 23.3 7.2E+02 0.016 26.6 10.4 17 401-417 209-225 (325)
39 PF05072 Herpes_UL43: Herpesvi 22.4 1E+03 0.022 26.0 11.5 161 193-378 140-319 (373)
40 PF10389 CoatB: Bacteriophage 22.1 1.9E+02 0.0042 22.6 4.4 30 6-35 15-44 (46)
41 PF03672 UPF0154: Uncharacteri 22.0 1.5E+02 0.0032 24.7 4.0 21 16-36 4-24 (64)
42 PF08098 ATX_III: Anemonia sul 21.6 39 0.00084 23.4 0.5 10 482-491 14-23 (27)
43 PF04123 DUF373: Domain of unk 21.2 6.7E+02 0.015 27.0 9.8 23 416-438 277-299 (344)
44 PF11151 DUF2929: Protein of u 20.3 3.5E+02 0.0076 21.7 5.7 33 402-438 5-37 (57)
45 cd06580 TM_PBP1_transp_TpRbsC_ 20.1 7E+02 0.015 24.5 9.2 74 124-201 124-200 (234)
No 1
>PLN02255 H(+) -translocating inorganic pyrophosphatase
Probab=100.00 E-value=1.1e-132 Score=1082.38 Aligned_cols=460 Identities=79% Similarity=1.254 Sum_probs=400.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHheeccCCCCCCCCC-CCCCCCCcchhhhhhhcccchhhhHHHHHHHHHH
Q 010729 3 STLLSELATEILVPVCAVVGIIFSLVQWFIVSRVRLTHERPPSSN-SDKKNGFNDYLIEEEEGINDQSVVAKCADIQSAI 81 (502)
Q Consensus 3 ~~~~s~~~~~~l~~~~~~~gl~~a~~~~~~v~~i~i~~~~~~~~~-~~~~~g~~~~l~~~~~G~~~~~~~~~m~eIa~~I 81 (502)
+++++|+++..+++++++++|+||+++++||+|++..++..++++ .+.++|++|++.|+++|+++++.++|||||+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~eG~~~~~~~~~m~~Ia~~I 80 (765)
T PLN02255 1 MAILSELATEVLIPVAALIGIAFALLQWYLVSRVKVSPDSGASSNGGGGGGGYGDYLIEEEEGLNDHNVVAKCAEIQNAI 80 (765)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccccccccccccccccccccccCccccccCHHHHHHHHHH
Confidence 368999999999999999999999999999999876432222212 1346788999999988888888899999999999
Q ss_pred HHhHHHHHhhhhhHHHHHHHHHHHHHHHHhhcccccccCCCcccccccccccchhhhhhhHHHHHHHHHHHHHhhhhhhh
Q 010729 82 SEGATSFLFTEYQYVGVFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGM 161 (502)
Q Consensus 82 ~eGA~AFL~~eYk~i~~~~vv~~vll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~taiaFllGa~~S~laGyiGM 161 (502)
||||+|||+||||++++|++++++++++++++.+.+.++.++|..|+.+.+.+.....++++++|++|+++|+++||+||
T Consensus 81 ~eGA~afL~rqyk~i~~~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fl~Ga~~S~~aG~iGM 160 (765)
T PLN02255 81 SEGATSFLFTEYKYVGIFMVIFAAVIFVFLGSVEGFSTKSQPCTYDKGKLCKPALANAAFSTVAFLLGALTSVVSGFLGM 160 (765)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999766554323334445566666667777777778899999999999999999999
Q ss_pred hhhhhhhhhhHHHHhhchhHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhHhHHhhcchHHHHHHHH
Q 010729 162 KIATYANARTTLEARKSVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGDDWEGLFEAITGYGLGGSSMALFG 241 (502)
Q Consensus 162 ~vAt~ANvRTA~AA~~gl~~AL~vAFrgGsVmGl~vvglgLlgl~~~~~~~~~~~~~~~~~~~~~i~Gfg~GaS~iALFa 241 (502)
|+|||||+|||+|||+|+++||++|||||+||||+|+||+|++++++|++|..+++++....+++++||+||||++|||+
T Consensus 161 ~vat~ANvRtA~AA~~gl~~al~vAfr~GaVmGl~vvgl~Llgl~~~~~~~~~~~~~~~~~~~~~l~Gfg~GaS~iAlFa 240 (765)
T PLN02255 161 KIATYANARTTLEARKGVGKAFITAFRSGAVMGFLLAANGLLVLYIAINLFKLYYGDDWEGLYEAITGYGLGGSSMALFG 240 (765)
T ss_pred HHHHHHHHHHHHHHHhchHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhHHhhhcccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998865454444446789999999999999999
Q ss_pred HHhccccccccccccccccccccCCCCCCCCCcccccccccCcccccccccchhhHhhHHHHHHHHHHHHHhhcCCcccc
Q 010729 242 RVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEF 321 (502)
Q Consensus 242 RVGGGIYTKAADVGADLVGKVEagIPEDDPRNPAVIADNVGDNVGDvAGMGADLFESy~~siiAAmvlg~~~~~~~~~~~ 321 (502)
||||||||||||||||||||||+|||||||||||||||||||||||||||||||||||++|++|||+|+....++.+..+
T Consensus 241 RvGGGIyTKAADVGADLVGKVEagIPEDDPRNPAvIADnVGDNVGD~AGmgADLFESy~~s~vaamilg~~~~~~~~~~~ 320 (765)
T PLN02255 241 RVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHDF 320 (765)
T ss_pred HHcCceeeeccccchhhhhhhhcCCCCCCCCCcchHHHhhcccccccccccchhHHHHHHHHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999963212322233
Q ss_pred ceehHhHHHHHHHHHHHHHHHHhhhhhhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccCcccccch
Q 010729 322 TSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKN 401 (502)
Q Consensus 322 ~~v~~PLli~a~GIiaSiig~~~v~~~~~~~~~~~~~~aL~~g~~vS~~l~~v~~~~~~~~~lp~~~~~~~~g~~~~~~~ 401 (502)
..++|||+++++||++|++|++++|.++|.++++|++++||+|+++|++++++.++++++|++|+++..+..+......+
T Consensus 321 ~~v~~PLli~~~gii~siig~~~v~~~~~~~~~~~~~~aL~~g~~~s~~l~~v~~~~~~~~~l~~~~~~~~~g~~~~~~~ 400 (765)
T PLN02255 321 TAMCYPLLISSVGIIVCLITTLFATDFFEIKAVKEIEPALKKQLIISTVLMTVGIAVVSWLALPSSFTIFNFGTQKVVKN 400 (765)
T ss_pred chhhHHHHHHHHHHHHHHHHHHheecccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhccccccccccc
Confidence 35899999999999999999999876667777779999999999999999999999999999987553322232233456
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccCCCcchHHHHHH--------HHHHHHH---HhhHHHHHHHHHhhcc
Q 010729 402 WQLFLCVAVGLWAGLIIGFVTEYYTSNAYRYIFKRSIR--------LSRSLIV---SLEFPVLTLCLLYLQP 462 (502)
Q Consensus 402 ~~~f~~~l~Gli~G~lIg~iTEYYTs~~y~PVr~IA~~--------~~~Gl~~---s~~~Pvl~I~~ai~~~ 462 (502)
|++|+|+++|+++|++|+++||||||++|||||+||++ +|+||++ |+.+|+++|+++|+.+
T Consensus 401 ~~~f~~~~iGl~~g~lI~~iTeYyTs~~y~PV~~IA~aS~tG~ATnII~GlavGm~St~~Pvl~I~~ai~~s 472 (765)
T PLN02255 401 WQLFFCVAIGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIYVS 472 (765)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999996 6789955 6669999999999998
No 2
>TIGR01104 V_PPase vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants), archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase, like H(+)-ATPase, acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants.
Probab=100.00 E-value=6.5e-126 Score=1023.58 Aligned_cols=396 Identities=75% Similarity=1.207 Sum_probs=348.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHheeccCCCCCCCCCCCCCCCCcchhhhhhhcccchhhhHHHHHHHHHHHHhHHHHHh
Q 010729 11 TEILVPVCAVVGIIFSLVQWFIVSRVRLTHERPPSSNSDKKNGFNDYLIEEEEGINDQSVVAKCADIQSAISEGATSFLF 90 (502)
Q Consensus 11 ~~~l~~~~~~~gl~~a~~~~~~v~~i~i~~~~~~~~~~~~~~g~~~~l~~~~~G~~~~~~~~~m~eIa~~I~eGA~AFL~ 90 (502)
..+++++++++|++||+++++||+|+ |+| +|||||||++|||||+|||+
T Consensus 3 ~~~~~~~~~~~gl~~a~~~~~~v~~~-------------------------~~G------~~~M~~Ia~~I~eGA~afL~ 51 (697)
T TIGR01104 3 TEILIPVCAVIGIAYAVLQWVWVSRV-------------------------KLG------TAKMAEIQQAISEGATAFLF 51 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcC-------------------------CCC------cHHHHHHHHHHHHHHHHHHH
Confidence 34677889999999999999999994 334 89999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhcccccccCCCcccccccccccchhhhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 010729 91 TEYQYVGVFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGMKIATYANAR 170 (502)
Q Consensus 91 ~eYk~i~~~~vv~~vll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~taiaFllGa~~S~laGyiGM~vAt~ANvR 170 (502)
||||++++|+++++++++++++..+. .+++++++|++|+++|++|||+|||+|||+|+|
T Consensus 52 rqyk~i~~~~vi~~v~l~~~~~~~~~---------------------~~~~~a~~Fl~Ga~~S~laG~iGM~iat~aNvR 110 (697)
T TIGR01104 52 TEYKYVAVFMVAFAVLIFVFLGSREG---------------------FSDFSTVAFLLGAVTSLLAGYLGMKIATYANAR 110 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccc---------------------chhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999765432100 012699999999999999999999999999999
Q ss_pred hHHHHhhchhHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhHhHHhhcchHHHHHHHHHHhcccccc
Q 010729 171 TTLEARKSVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGDDWEGLFEAITGYGLGGSSMALFGRVGGGIYTK 250 (502)
Q Consensus 171 TA~AA~~gl~~AL~vAFrgGsVmGl~vvglgLlgl~~~~~~~~~~~~~~~~~~~~~i~Gfg~GaS~iALFaRVGGGIYTK 250 (502)
||+|||+|+++||++|||||+||||+|+||+|++++++|++|+..++++..+.++.++||+||+|++|||+|||||||||
T Consensus 111 tA~AA~~~~~~al~vafrgGaVmGl~vvgl~Llgl~~~~~i~~~~~~~~~~~~~~~l~Gfg~GaS~iALFaRvGGGIyTK 190 (697)
T TIGR01104 111 TTLEARKGVGKALIVAFRSGAVMGFLLAGLGLLVLYITILVFKIYYGDDWEGLFEPITGYGFGASSMALFGRVGGGIYTK 190 (697)
T ss_pred HHHHHHhCHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHhcccCchhhhhhhHHhhhcccHHHHHHHHHHcCceeee
Confidence 99999999999999999999999999999999999999999865444444445789999999999999999999999999
Q ss_pred ccccccccccccccCCCCCCCCCcccccccccCcccccccccchhhHhhHHHHHHHHHHHHHhhcCCccccceehHhHHH
Q 010729 251 AADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTSMLYPLLI 330 (502)
Q Consensus 251 AADVGADLVGKVEagIPEDDPRNPAVIADNVGDNVGDvAGMGADLFESy~~siiAAmvlg~~~~~~~~~~~~~v~~PLli 330 (502)
|||||||||||||+|||||||||||||||||||||||||||||||||||++|++|+|+|+++..++...++..++|||++
T Consensus 191 AADVGADLVGKVEagIPEDDPRNPAvIADnVGDNVGD~AGmgADlFESy~~s~iaamvlg~~~~~~~~~~~~~v~~Pl~~ 270 (697)
T TIGR01104 191 AADVGADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDIAGMGADLFESYAESSCAALVLASISSFGLPHDFTAMLYPLAL 270 (697)
T ss_pred ccccchhhhcccccCCCCCCCCCchhHHHhcCCcccchhcccchHHHHHHHHHHHHHHHhhhhhcccccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999964312222222358999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccCcccccchhHHHHHHHH
Q 010729 331 SSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAV 410 (502)
Q Consensus 331 ~a~GIiaSiig~~~v~~~~~~~~~~~~~~aL~~g~~vS~~l~~v~~~~~~~~~lp~~~~~~~~g~~~~~~~~~~f~~~l~ 410 (502)
+++||++|++|++++ |.++++||+++||+|+++|++++++.++++++|++|+.+....++......+|++|+|+++
T Consensus 271 ~~~gi~~Siig~~~v----~~~~~~~~~~aL~~g~~~s~~l~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~ 346 (697)
T TIGR01104 271 SSVGILVCLLTTLFV----KIKPVKEIEPALKKQLIISTVLMTVGVAVISWVALPTGFTIFNFGTQKEVSNWQLFLCVAV 346 (697)
T ss_pred HHHHHHHHHHHheEE----ecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchHHHHHHHHH
Confidence 999999999999986 3455668999999999999999999999999999987554322222233456899999999
Q ss_pred HHHHHHHHHhhhhhcccCCCcchHHHHHH--------HHHHHHH---HhhHHHHHHHHHhhcc
Q 010729 411 GLWAGLIIGFVTEYYTSNAYRYIFKRSIR--------LSRSLIV---SLEFPVLTLCLLYLQP 462 (502)
Q Consensus 411 Gli~G~lIg~iTEYYTs~~y~PVr~IA~~--------~~~Gl~~---s~~~Pvl~I~~ai~~~ 462 (502)
|+++|++|+++||||||++||||||||++ +++||++ |+.+|+++|+++|+.+
T Consensus 347 Gl~~g~lI~~iTeYyTs~~y~PV~~IA~as~tG~AtnII~Gla~Gm~St~~pvl~I~~~i~~s 409 (697)
T TIGR01104 347 GLWAGLLIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAASIIVS 409 (697)
T ss_pred HHHHHHHHHHhheeecCCCCCcHHHHHHHhCcCchHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999996 6789955 6669999999999998
No 3
>PLN02277 H(+) -translocating inorganic pyrophosphatase
Probab=100.00 E-value=1e-123 Score=1011.47 Aligned_cols=404 Identities=32% Similarity=0.495 Sum_probs=340.8
Q ss_pred HHHHHHHHHHHHHHHHheeccCCCCCCCCCCCCCCCCcchhhhhhhcccchhhhHHHHHHHHHHHHhHHHHHhhhhhHHH
Q 010729 18 CAVVGIIFSLVQWFIVSRVRLTHERPPSSNSDKKNGFNDYLIEEEEGINDQSVVAKCADIQSAISEGATSFLFTEYQYVG 97 (502)
Q Consensus 18 ~~~~gl~~a~~~~~~v~~i~i~~~~~~~~~~~~~~g~~~~l~~~~~G~~~~~~~~~m~eIa~~I~eGA~AFL~~eYk~i~ 97 (502)
++++||+||+++++||+|+ |+| +|||||||++|||||+|||+||||+++
T Consensus 2 ~~~l~l~~a~~~~~~v~~~-------------------------~~G------~~~M~~Ia~~I~eGA~afL~~qyk~i~ 50 (730)
T PLN02277 2 VCIISLLFSLYLTKWVLAK-------------------------DEG------PPEMVEISDAIRDGAEGFFRTQYGTIS 50 (730)
T ss_pred hHHHHHHHHHHHHHHHHcC-------------------------CCC------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999994 334 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccCCCcccccccccccchhhhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHhh
Q 010729 98 VFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGMKIATYANARTTLEARK 177 (502)
Q Consensus 98 ~~~vv~~vll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~taiaFllGa~~S~laGyiGM~vAt~ANvRTA~AA~~ 177 (502)
+|++++++++++++... ...++ +......+...+++++++|++|+++|++|||+|||+|||||+|||+|||+
T Consensus 51 ~~~vv~~~~l~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~a~~Fl~Ga~~S~laG~iGM~vAt~aNvRtA~AA~~ 122 (730)
T PLN02277 51 KMAVVLAFVILGIYLFR-SLTPQ-------QEAAGLGRATSAYITVASFLLGALCSGIAGYVGMWVSVRANVRVSSAARR 122 (730)
T ss_pred HHHHHHHHHHHHHHhcc-ccccc-------cccccccchhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 99999999987654321 00000 00011111223578999999999999999999999999999999999999
Q ss_pred chhHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHhhcCC------CchhhhHhHHhhcchHHHHHHHHHHhccccccc
Q 010729 178 SVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGD------DWEGLFEAITGYGLGGSSMALFGRVGGGIYTKA 251 (502)
Q Consensus 178 gl~~AL~vAFrgGsVmGl~vvglgLlgl~~~~~~~~~~~~~------~~~~~~~~i~Gfg~GaS~iALFaRVGGGIYTKA 251 (502)
|+++||++|||||+||||+|+||+||+++++|++|...+.. +..+.++.++||+||+|++|||+||||||||||
T Consensus 123 ~~~~al~vAfrgGaVmGl~vvgl~Llgl~~~~~i~~~~~~~~~~~~~~~~~~~~~l~Gfg~GaS~iALFaRvGGGIyTKA 202 (730)
T PLN02277 123 SAREALQIAVRAGGFSALVVVGMTVLGVAILYATFYVWLGVDSPGGMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKA 202 (730)
T ss_pred CHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHhhhccHHHHHHHHHHcCceeeec
Confidence 99999999999999999999999999999999888654321 122357799999999999999999999999999
Q ss_pred cccccccccccccCCCCCCCCCcccccccccCcccccccccchhhHhhHHHHHHHHHHHHHhhc--CCccccceehHhHH
Q 010729 252 ADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSF--GINHEFTSMLYPLL 329 (502)
Q Consensus 252 ADVGADLVGKVEagIPEDDPRNPAVIADNVGDNVGDvAGMGADLFESy~~siiAAmvlg~~~~~--~~~~~~~~v~~PLl 329 (502)
||||||||||||+|||||||||||||||||||||||||||||||||||++|++|+|+||+..+. +.......++|||+
T Consensus 203 ADVGADLVGKVEagIPEDDPRNPAvIADnVGDNVGDvAGmgADLFESy~~siiaamiLg~~~~~~~~~~~~~~~v~~Pl~ 282 (730)
T PLN02277 203 ADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFESIAAEIISAMILGGTMAKRCKIEDPSGFILFPLV 282 (730)
T ss_pred cccchhhhhhhhcCCCCCCCCCchHHHHHhCCcccccccccchhHHHHHHHHHHHHHHHHHHhhccCcccccccchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999965321 11111245999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcc---ccChHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccCcccccchhHHHH
Q 010729 330 ISSIGILVCLITTLFATDIFEVKA---VKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFL 406 (502)
Q Consensus 330 i~a~GIiaSiig~~~v~~~~~~~~---~~~~~~aL~~g~~vS~~l~~v~~~~~~~~~lp~~~~~~~~g~~~~~~~~~~f~ 406 (502)
++++||++|++|++++|...+.++ +++|+++||+|+++|+++++++++++++|++.. ...+..||++|+
T Consensus 283 i~~~gii~Siig~~~vr~~~~~~~~~~~~~p~~aL~~g~~vs~~l~~v~~~~~~~~~l~~--------~~~~~~~~~~f~ 354 (730)
T PLN02277 283 VHSFDLVVSSIGILSIKGTRDSSVKSPVEDPMAVLQKGYSVTIILAVVTFGASTRWLLYT--------EQAPSAWFNFAL 354 (730)
T ss_pred HHHHHHHHHHHHHheEeccCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------ccccchHHHHHH
Confidence 999999999999999752111001 247899999999999999999999999887631 011113679999
Q ss_pred HHHHHHHHHHHHHhhhhhcccCCCcchHHHHHH--------HHHHHHH---HhhHHHHHHHHHhhcccccccccccCC
Q 010729 407 CVAVGLWAGLIIGFVTEYYTSNAYRYIFKRSIR--------LSRSLIV---SLEFPVLTLCLLYLQPCARCCRFLQNR 473 (502)
Q Consensus 407 ~~l~Gli~G~lIg~iTEYYTs~~y~PVr~IA~~--------~~~Gl~~---s~~~Pvl~I~~ai~~~~~~~~~~~~~~ 473 (502)
|+++|+++|++|+++||||||++|||||+||++ +++||++ |+.+|+++|+++|+.+ +|+.++
T Consensus 355 ~~~~Gl~~g~lI~~iTeYYTs~~y~PV~~IA~aS~tG~ATnII~Gla~Gm~St~~Pvl~I~~ai~~s-----y~l~~~ 427 (730)
T PLN02277 355 CGLVGIITAYAFVWISQYYTDYKYEPVRTLALASTTGHGTNIIAGVSLGLESTALPVLVISVAIISA-----YWLGNT 427 (730)
T ss_pred HHHHHHHHHHHHHHeeeeeCCCCCCcHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHccc
Confidence 999999999999999999999999999999996 6789955 6679999999999999 777644
No 4
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=100.00 E-value=1.3e-121 Score=995.73 Aligned_cols=390 Identities=45% Similarity=0.719 Sum_probs=335.0
Q ss_pred HHHHHHHHHHHHHHHheeccCCCCCCCCCCCCCCCCcchhhhhhhcccchhhhHHHHHHHHHHHHhHHHHHhhhhhHHHH
Q 010729 19 AVVGIIFSLVQWFIVSRVRLTHERPPSSNSDKKNGFNDYLIEEEEGINDQSVVAKCADIQSAISEGATSFLFTEYQYVGV 98 (502)
Q Consensus 19 ~~~gl~~a~~~~~~v~~i~i~~~~~~~~~~~~~~g~~~~l~~~~~G~~~~~~~~~m~eIa~~I~eGA~AFL~~eYk~i~~ 98 (502)
++++|+||+++++||+|+ |+| ++|||||+++|||||+|||+||||++++
T Consensus 1 ~~~~l~~a~~~~~~v~~~-------------------------~~G------~~~m~~Ia~~I~eGA~aFL~reYk~i~~ 49 (682)
T PF03030_consen 1 AVLGLIFALFLARWVLKQ-------------------------DEG------NEKMQEIAAAIQEGAMAFLKREYKTIAI 49 (682)
T ss_dssp -HHHHHHHHHHHHHHHTS-----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhcC-------------------------CCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999994 344 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccccCCCcccccccccccchhhhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHH-hh
Q 010729 99 FMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGMKIATYANARTTLEA-RK 177 (502)
Q Consensus 99 ~~vv~~vll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~taiaFllGa~~S~laGyiGM~vAt~ANvRTA~AA-~~ 177 (502)
|+++++++|++++...+ ..+++++++|++|+++|.+|||+||++|||+|+|||++| ++
T Consensus 50 ~~vi~~~ll~~~~~~~~---------------------~~~~~taiaFliGa~~S~laGyiGM~vAt~aN~Rta~AAr~~ 108 (682)
T PF03030_consen 50 FIVIVAILLFFLLGFLG---------------------GQGWWTAIAFLIGALCSALAGYIGMRVATRANVRTANAARTR 108 (682)
T ss_dssp HHHHHHHHHHHHHHCCC---------------------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C
T ss_pred HHHHHHHHHHHHHhhcc---------------------chhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHhcC
Confidence 99999999988763210 136899999999999999999999999999999999999 59
Q ss_pred chhHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHhhcC-CCchhhhHhHHhhcchHHHHHHHHHHhcccccccccccc
Q 010729 178 SVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYG-DDWEGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGA 256 (502)
Q Consensus 178 gl~~AL~vAFrgGsVmGl~vvglgLlgl~~~~~~~~~~~~-~~~~~~~~~i~Gfg~GaS~iALFaRVGGGIYTKAADVGA 256 (502)
|+++||++|||||+||||+|+||+|++++++|+++...+. .+.++.++.++||+||+|++|||+|||||||||||||||
T Consensus 109 gl~~AL~vAfrgGaVmGl~vvglgLlgl~~l~~i~~~~~~~~~~~~~~~~l~Gfg~GaS~iALFaRvGGGIyTKAADVGA 188 (682)
T PF03030_consen 109 GLNKALQVAFRGGAVMGLSVVGLGLLGLSILFLIFSAFFGKTNPENAPEALSGFGFGASSIALFARVGGGIYTKAADVGA 188 (682)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T-HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHhhcchHHHHHHHHHHcCceehhHHHHhh
Confidence 9999999999999999999999999999999999876544 334667899999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCCcccccccccCcccccccccchhhHhhHHHHHHHHHHHHHhhcCCccccceehHhHHHHHHHHH
Q 010729 257 DLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTSMLYPLLISSIGIL 336 (502)
Q Consensus 257 DLVGKVEagIPEDDPRNPAVIADNVGDNVGDvAGMGADLFESy~~siiAAmvlg~~~~~~~~~~~~~v~~PLli~a~GIi 336 (502)
|||||||+|||||||||||||||||||||||||||||||||||+++++|+|+|+.............++|||+++++||+
T Consensus 189 DLVGKVEagIPEDDPRNPAvIADnVGDNVGD~AGmgADLFESy~~sivaamilg~~~~~~~~~~~~~v~~Pl~i~~~gii 268 (682)
T PF03030_consen 189 DLVGKVEAGIPEDDPRNPAVIADNVGDNVGDVAGMGADLFESYVVSIVAAMILGSTLFGTNGFNFSGVLFPLLIAAVGII 268 (682)
T ss_dssp HHHHHTTS---TT-TT-TTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHTSHHHHTT-HHHHTHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCCcccchHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999986532211222368999999999999
Q ss_pred HHHHHHHhhhhhhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccCcccccchhHHHHHHHHHHHHHH
Q 010729 337 VCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGL 416 (502)
Q Consensus 337 aSiig~~~v~~~~~~~~~~~~~~aL~~g~~vS~~l~~v~~~~~~~~~lp~~~~~~~~g~~~~~~~~~~f~~~l~Gli~G~ 416 (502)
+|++|++++|.. +.++.++|+++||+|+++|+++++++++++++|++..+ ..+....||++|+|+++|+++|+
T Consensus 269 ~Siig~~~v~~~-~~~~~~~~~~aL~~g~~vs~~l~~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~iGl~~g~ 341 (682)
T PF03030_consen 269 ASIIGIFFVRTK-KGATSKDPMKALRRGYIVSSILSIILFFFLTYWLLGFS------FFGSGISWWGLFGCVLIGLVAGV 341 (682)
T ss_dssp HHHHHHHHHHTT----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSEET------TEEEEEEHHHHHHHHHHHHHHHH
T ss_pred HHHHheeEEEec-CCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cccCCcchHHHHHHHHHHHHHHH
Confidence 999999998642 33345699999999999999999999999999987221 12234568999999999999999
Q ss_pred HHHhhhhhcccCCCcchHHHHHH--------HHHHHHH---HhhHHHHHHHHHhhcccccccccccC
Q 010729 417 IIGFVTEYYTSNAYRYIFKRSIR--------LSRSLIV---SLEFPVLTLCLLYLQPCARCCRFLQN 472 (502)
Q Consensus 417 lIg~iTEYYTs~~y~PVr~IA~~--------~~~Gl~~---s~~~Pvl~I~~ai~~~~~~~~~~~~~ 472 (502)
+|+++||||||++||||||||++ +++|+++ ||.+|+++|+++|+.+ +||..
T Consensus 342 lI~~~TeYyTs~~~~PVr~IA~as~tG~AtnII~Gla~G~~St~~pvl~i~~~i~~s-----y~l~~ 403 (682)
T PF03030_consen 342 LIGFITEYYTSYSYRPVREIAEASETGPATNIISGLAVGMESTAIPVLVIAAAILIS-----YYLGG 403 (682)
T ss_dssp HHHHHHHHHH-TTSHHHHHHHHHGGG-HHHHHHHHHHHHHHCTHHHHHHHHHHHHHH-----HHHH-
T ss_pred HHHHHHHHHcCCCCchHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHh
Confidence 99999999999999999999996 6789966 5669999999999999 77763
No 5
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=100.00 E-value=2.7e-119 Score=971.20 Aligned_cols=364 Identities=43% Similarity=0.666 Sum_probs=326.9
Q ss_pred hhhcccchhhhHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHhhcccccccCCCcccccccccccchhhhhh
Q 010729 61 EEEGINDQSVVAKCADIQSAISEGATSFLFTEYQYVGVFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAA 140 (502)
Q Consensus 61 ~~~G~~~~~~~~~m~eIa~~I~eGA~AFL~~eYk~i~~~~vv~~vll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (502)
+|+| +||||||+++|||||++||+||||++++|.++++++|+.... .+..++
T Consensus 4 ~~~G------~~~m~~Ia~~I~eGA~afl~rqyk~i~~~~i~~~~~l~~~~~----------------------~~~~~~ 55 (666)
T PRK00733 4 QPAG------TERMQEIAGAIQEGAMAYLKRQYKTIAIFGVVVAVLLFLPAG----------------------GLFLGW 55 (666)
T ss_pred CCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------------------hHHHHH
Confidence 5667 899999999999999999999999999999999999865411 012357
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHhhchhHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 010729 141 FSTVSFLLGAITSVLSGFLGMKIATYANARTTLEARKSVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGDDW 220 (502)
Q Consensus 141 ~taiaFllGa~~S~laGyiGM~vAt~ANvRTA~AA~~gl~~AL~vAFrgGsVmGl~vvglgLlgl~~~~~~~~~~~~~~~ 220 (502)
+++++|++|+++|.+|||+|||+|||||+|||+|||+|+++||++|||||+||||+|+||+|++++++|++|.... +.
T Consensus 56 ~~~~~Fl~Ga~~S~laG~iGM~iat~aN~Rta~aA~~~~~~al~vafr~G~vmGl~vvgl~Llgl~~~~~~~~~~~--~~ 133 (666)
T PRK00733 56 LTAVAFLVGAVFSALAGYIGMRVATRANVRTAQAARKGLGKALKVAFRGGAVMGLLVVGLGLLGVAGLYLVFGLGA--NP 133 (666)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhccc--cc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998876322 23
Q ss_pred hhhhHhHHhhcchHHHHHHHHHHhccccccccccccccccccccCCCCCCCCCcccccccccCcccccccccchhhHhhH
Q 010729 221 EGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYA 300 (502)
Q Consensus 221 ~~~~~~i~Gfg~GaS~iALFaRVGGGIYTKAADVGADLVGKVEagIPEDDPRNPAVIADNVGDNVGDvAGMGADLFESy~ 300 (502)
.+.++.++||+||+|++|||+||||||||||||||||||||||+|||||||||||||||||||||||||||||||||||+
T Consensus 134 ~~~~~~l~gf~~GaS~iAlFaRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADlfESy~ 213 (666)
T PRK00733 134 DDAPDALVGFGFGASLIALFARVGGGIFTKAADVGADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDCAGMGADLFESYA 213 (666)
T ss_pred hhhhHHHHHhhhhHHHHHHHHHhcccceecccccchhhhhhhhcCCCCCCCCCcchHHHhhcccchhhccccchHHHHHH
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCccccceehHhHHHHHHHHHHHHHHHHhhhhhhhhccccChHHHHHHHHHHHHHHHHHHHHHHH
Q 010729 301 ESSCAALVVASISSFGINHEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVS 380 (502)
Q Consensus 301 ~siiAAmvlg~~~~~~~~~~~~~v~~PLli~a~GIiaSiig~~~v~~~~~~~~~~~~~~aL~~g~~vS~~l~~v~~~~~~ 380 (502)
++++|+|+||... .....+...++|||+++++||++|++|++++ |.+++++|+++||+|+++|++++++++|+++
T Consensus 214 ~sivaamilg~~~-~~~~~~~~~v~~Pl~i~~~gii~Siig~~~v----~~~~~~~~~~aL~~g~~~s~~l~~v~~~~~~ 288 (666)
T PRK00733 214 VTIVAAMVLGAAA-ADAAFGVAGVLFPLLIAAVGIIASIIGIFFV----RLGKGGNPMKALNRGLIVTAVLSIVLTYFAT 288 (666)
T ss_pred HHHHHHHHHhhhc-cccccchhHHHHHHHHHHHHHHHHHHHHeeE----EeCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999732 1112234569999999999999999999986 4566689999999999999999999999999
Q ss_pred HhhcCccccccccCcccccchhHHHHHHHHHHHHHHHHHhhhhhcccCCCcchHHHHHH--------HHHHHHH---Hhh
Q 010729 381 WIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYRYIFKRSIR--------LSRSLIV---SLE 449 (502)
Q Consensus 381 ~~~lp~~~~~~~~g~~~~~~~~~~f~~~l~Gli~G~lIg~iTEYYTs~~y~PVr~IA~~--------~~~Gl~~---s~~ 449 (502)
+|++|+.. ....+|++|+|+++|+++|++|+++||||||++|||||+||++ +++||++ ||.
T Consensus 289 ~~~l~~~~--------~~~~~~~~f~~~~iGlv~g~li~~iTeYyTs~~~~PVr~IA~as~tG~aTnIi~Gla~Gm~St~ 360 (666)
T PRK00733 289 YWLLGDGA--------DGFTWLNLFGAVLIGLVVGALIGLITEYYTSTEYRPVKEIAEASRTGPATNIISGLAVGMESTA 360 (666)
T ss_pred HHHhcccc--------cccccHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcHHHHHHHhCcCchHHHHHHHHHHHHHHH
Confidence 99997521 2235789999999999999999999999999999999999996 6789955 666
Q ss_pred HHHHHHHHHhhcccccccccccC
Q 010729 450 FPVLTLCLLYLQPCARCCRFLQN 472 (502)
Q Consensus 450 ~Pvl~I~~ai~~~~~~~~~~~~~ 472 (502)
+|+++|+++|+.+ .||+.
T Consensus 361 ~pvl~i~~ai~~s-----y~l~~ 378 (666)
T PRK00733 361 LPVLVIVAAILGA-----YLLGM 378 (666)
T ss_pred HHHHHHHHHHHHH-----HHhcc
Confidence 9999999999999 77754
No 6
>COG3808 OVP1 Inorganic pyrophosphatase [Energy production and conversion]
Probab=100.00 E-value=1.6e-119 Score=942.92 Aligned_cols=388 Identities=39% Similarity=0.613 Sum_probs=346.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHheeccCCCCCCCCCCCCCCCCcchhhhhhhcccchhhhHHHHHHHHHHHHhHHHHHh
Q 010729 11 TEILVPVCAVVGIIFSLVQWFIVSRVRLTHERPPSSNSDKKNGFNDYLIEEEEGINDQSVVAKCADIQSAISEGATSFLF 90 (502)
Q Consensus 11 ~~~l~~~~~~~gl~~a~~~~~~v~~i~i~~~~~~~~~~~~~~g~~~~l~~~~~G~~~~~~~~~m~eIa~~I~eGA~AFL~ 90 (502)
..++.+++++++++||.|.+++|.| +|+| |||||||+.+|||||++||+
T Consensus 5 ~~~l~i~~gl~sv~~A~~~~~sVl~-------------------------~~~G------n~rm~eIa~aIreGA~ayL~ 53 (703)
T COG3808 5 VLYLAIACGLLSVLYAAWAAKSVLR-------------------------ADAG------NERMKEIAAAIREGAMAYLA 53 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-------------------------ccCC------cHHHHHHHHHHHHhHHHHHH
Confidence 4577789999999999999999998 3445 99999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhcccccccCCCcccccccccccchhhhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 010729 91 TEYQYVGVFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGMKIATYANAR 170 (502)
Q Consensus 91 ~eYk~i~~~~vv~~vll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~taiaFllGa~~S~laGyiGM~vAt~ANvR 170 (502)
||||+|+++.+++++++.+++. +|.++++|++||+.|+.|||+||+++||||+|
T Consensus 54 rqy~tiavv~ivva~ll~~~l~--------------------------~~~ta~~Fl~GAv~S~~AG~~GM~vstrAN~R 107 (703)
T COG3808 54 RQYKTIAVVGIVVAILLAWFLL--------------------------SWLTAIGFLLGAVLSAAAGFAGMHVSTRANVR 107 (703)
T ss_pred hhhhHHHHHHHHHHHHHHHHHh--------------------------hhHHHHHHHHHHHHHhhhcccceeeeehhhhH
Confidence 9999999999999988877642 36799999999999999999999999999999
Q ss_pred hHHHHhhchhHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHhhcCCC--chhhhHhHHhhcchHHHHHHHHHHhcccc
Q 010729 171 TTLEARKSVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGDD--WEGLFEAITGYGLGGSSMALFGRVGGGIY 248 (502)
Q Consensus 171 TA~AA~~gl~~AL~vAFrgGsVmGl~vvglgLlgl~~~~~~~~~~~~~~--~~~~~~~i~Gfg~GaS~iALFaRVGGGIY 248 (502)
|||||++++.+||++|||+|+||||+|+||+||+++++|+++....+.+ .....+.++|||||||+|+||+|||||||
T Consensus 108 tAqAAs~~l~~al~vaf~sGaV~Gl~VaGlaLlg~s~~ylv~~~~~g~~~~~~~~i~~lv~~gfGaSlIslFaRvGGGIf 187 (703)
T COG3808 108 TAQAASTGLGKALDVAFKSGAVMGLSVAGLALLGLSLYYLVLTSVLGHEPNLRIVIDSLVGLGFGASLISLFARVGGGIF 187 (703)
T ss_pred HHHHHHhhhhhhhhhhcccCcchhhHHHHHHHHHHHhhhheeecccCCCcccchhhhhhhhhccchHHHHHHHHhcCcee
Confidence 9999999999999999999999999999999999999999987644321 23456789999999999999999999999
Q ss_pred ccccccccccccccccCCCCCCCCCcccccccccCcccccccccchhhHhhHHHHHHHHHHHHHhhcCCccccceehHhH
Q 010729 249 TKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTSMLYPL 328 (502)
Q Consensus 249 TKAADVGADLVGKVEagIPEDDPRNPAVIADNVGDNVGDvAGMGADLFESy~~siiAAmvlg~~~~~~~~~~~~~v~~PL 328 (502)
||+||||||||||||+|||||||||||||||||||||||||||+|||||||+++++|+|+|+++.+.+.+.-...++|||
T Consensus 188 TKaADvgaDLVGKVEagIPEDDPRNpatIADNVGDNVGD~AGM~ADLfEsYvvtvvAtm~Laai~f~~~~~~~~~ilyPl 267 (703)
T COG3808 188 TKAADVGADLVGKVEAGIPEDDPRNPATIADNVGDNVGDCAGMAADLFESYVVTVVATMVLAAIFFLGTETIEAVILYPL 267 (703)
T ss_pred cchhhcccccccccccCCCCCCCCCccccccccCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999986433222224588999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccCcccccchhHHHHHH
Q 010729 329 LISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCV 408 (502)
Q Consensus 329 li~a~GIiaSiig~~~v~~~~~~~~~~~~~~aL~~g~~vS~~l~~v~~~~~~~~~lp~~~~~~~~g~~~~~~~~~~f~~~ 408 (502)
.+++++|++||+|+||+ |.++++++|.+|++|++.|.++++++++++++.++..+.. .. .......+++|.|.
T Consensus 268 ~i~a~~i~~Si~gtffV----k~~~~~~i~~al~~gl~~t~~Lsvv~~~~~t~~l~g~~~~--~v-~g~~~~~~~lf~~~ 340 (703)
T COG3808 268 AICAVGIITSIIGTFFV----KLGKSGSIMGALYKGLIATGILSVVALAFVTSFLLGGTIG--TV-AGMSIGAINLFFCG 340 (703)
T ss_pred HHHHHHHHHHHHhheEE----EeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--cc-ccccccchhhHHHH
Confidence 99999999999999985 6778899999999999999999999999999887631110 00 11234568899999
Q ss_pred HHHHHHHHHHHhhhhhcccCCCcchHHHHHH--------HHHHHHH---HhhHHHHHHHHHhhcc
Q 010729 409 AVGLWAGLIIGFVTEYYTSNAYRYIFKRSIR--------LSRSLIV---SLEFPVLTLCLLYLQP 462 (502)
Q Consensus 409 l~Gli~G~lIg~iTEYYTs~~y~PVr~IA~~--------~~~Gl~~---s~~~Pvl~I~~ai~~~ 462 (502)
++|++++.+|+++||||||++|||||+|||+ +|+||++ ||.+|+++|.++|+.+
T Consensus 341 ~~Glv~~~lIv~iTeyYT~t~~rPv~~ia~as~tG~~tnii~GlavgleSt~~P~iviv~gIi~~ 405 (703)
T COG3808 341 VIGLVVTALIVVITEYYTSTNYRPVNSIAQASVTGHGTNIIQGLAVGLESTALPAIVIVIGIIIT 405 (703)
T ss_pred HHHHHHHHHheeeeeeeccCCcchHHHHHHhhccCcchhhhhhhhhhhhhccccHHHHHHHHHHH
Confidence 9999999999999999999999999999997 6789976 5559999999999987
No 7
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=71.18 E-value=60 Score=29.01 Aligned_cols=102 Identities=20% Similarity=0.361 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHHHHHhhcCCccccceehHhHHHHHHHHHHHHHHHHhhhhhhhhccccChHHHHHHHHHHHHHHHHHHHH
Q 010729 298 SYAESSCAALVVASISSFGINHEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIA 377 (502)
Q Consensus 298 Sy~~siiAAmvlg~~~~~~~~~~~~~v~~PLli~a~GIiaSiig~~~v~~~~~~~~~~~~~~aL~~g~~vS~~l~~v~~~ 377 (502)
+|..+.+..++++....+.. .+.=..|.++..+.++++.+|.++..+ |.+ +|-+-.|..+..+... ..+
T Consensus 14 ~~~~tl~~~l~~a~ll~~~~---~~e~~~~~~~~~i~~ls~~~GG~~a~~--~~~-----~kG~l~G~~~Gl~y~~-il~ 82 (116)
T PF12670_consen 14 AYIITLILLLLLALLLYFTS---LSESILPWLVVIIYILSVFIGGFYAGR--KAG-----SKGWLHGLLVGLLYFL-ILL 82 (116)
T ss_pred HHHHHHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHHHHHHHHHH--HHc-----cchHHHHHHHHHHHHH-HHH
Confidence 45555555555555443221 222358888888999999999987531 111 2456666665543333 334
Q ss_pred HHHHhhcCccccccccCcccccchhHHHHHHHHHHHHHHH
Q 010729 378 IVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLI 417 (502)
Q Consensus 378 ~~~~~~lp~~~~~~~~g~~~~~~~~~~f~~~l~Gli~G~l 417 (502)
.+++...|+.+. ......+...|.+.|.+.|++
T Consensus 83 lis~~~~~~~~~-------~~~~~~~~~~~~~~G~lGG~l 115 (116)
T PF12670_consen 83 LISFLFGPGPFS-------GSSQLLKLLLCLLAGALGGML 115 (116)
T ss_pred HHHHHHccCcch-------HHHHHHHHHHHHHHHHHHhhc
Confidence 455555443111 011234667788888877753
No 8
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=69.77 E-value=21 Score=41.30 Aligned_cols=138 Identities=17% Similarity=0.128 Sum_probs=68.7
Q ss_pred cccccCcccccccccchhhHhhHHHHHHHHHHHHHhhcCC-ccccce--ehHhHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 010729 278 ADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGI-NHEFTS--MLYPLLISSIGILVCLITTLFATDIFEVKAV 354 (502)
Q Consensus 278 ADNVGDNVGDvAGMGADLFESy~~siiAAmvlg~~~~~~~-~~~~~~--v~~PLli~a~GIiaSiig~~~v~~~~~~~~~ 354 (502)
.|||||+.|=-|-.=--..+|.+++++=+..+........ .-.++. -.+-++.+.+|++..-...- ....+..
T Consensus 214 GDNVGD~AGmgADLFESy~~sivaamilg~~~~~~~~~~~~~v~~Pl~i~~~gii~Siig~~~v~~~~~----~~~~~~~ 289 (682)
T PF03030_consen 214 GDNVGDVAGMGADLFESYVVSIVAAMILGSTLFGTNGFNFSGVLFPLLIAAVGIIASIIGIFFVRTKKG----ATSKDPM 289 (682)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHTSHHHHTT-HHHHTHHHHHHHHHHHHHHHHHHHHHTT-------SGGGHH
T ss_pred HhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHheeEEEecCC----ccccCHH
Confidence 4999999996665444445677765433333222110000 000111 12455555555543333221 1122233
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccCcccccchhHHHHHHHHHHHHHHHHHhhhhhc
Q 010729 355 KEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYY 425 (502)
Q Consensus 355 ~~~~~aL~~g~~vS~~l~~v~~~~~~~~~lp~~~~~~~~g~~~~~~~~~~f~~~l~Gli~G~lIg~iTEYY 425 (502)
+.+.+.+.....++.+......+++........ . ..+...+|....-.+.|++.+.+--+-|+|-
T Consensus 290 ~aL~~g~~vs~~l~~i~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~iGl~~g~lI~~~TeYyTs~~ 354 (682)
T PF03030_consen 290 KALRRGYIVSSILSIILFFFLTYWLLGFSFFGS-G-----ISWWGLFGCVLIGLVAGVLIGFITEYYTSYS 354 (682)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSEETTEEE-E-----EEHHHHHHHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-C-----cchHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 445567777777777777777665540100000 0 0001124566677777888888888888864
No 9
>PRK11677 hypothetical protein; Provisional
Probab=68.65 E-value=5.8 Score=36.99 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccCCCcchHHHHH
Q 010729 405 FLCVAVGLWAGLIIGFVTEYYTSNAYRYIFKRSI 438 (502)
Q Consensus 405 f~~~l~Gli~G~lIg~iTEYYTs~~y~PVr~IA~ 438 (502)
|..+++|+++|++||++.-.||+.+.+--+++-+
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~~~~q~~le~ 36 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQY 36 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHH
Confidence 5678899999999999999999987665555544
No 10
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=68.05 E-value=73 Score=35.81 Aligned_cols=27 Identities=19% Similarity=0.148 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccCC
Q 010729 403 QLFLCVAVGLWAGLIIGFVTEYYTSNA 429 (502)
Q Consensus 403 ~~f~~~l~Gli~G~lIg~iTEYYTs~~ 429 (502)
+.|--++.=+...+.+++++|-|++++
T Consensus 249 ~~~~~~~~~~~i~~~~~~~~~~~~~~~ 275 (498)
T COG3104 249 NTFSGVLLVISILIAIIYFAEAFRSPK 275 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 333333334446677889999999864
No 11
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=58.20 E-value=1.5e+02 Score=27.94 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=12.9
Q ss_pred hhcccchhhhHHH---HHHHHHHHH
Q 010729 62 EEGINDQSVVAKC---ADIQSAISE 83 (502)
Q Consensus 62 ~~G~~~~~~~~~m---~eIa~~I~e 83 (502)
++|.+++++.+++ +|||+.|.+
T Consensus 38 ~~G~sEeeii~~LG~P~~iA~~i~~ 62 (181)
T PF08006_consen 38 EEGKSEEEIIAELGSPKEIAREILA 62 (181)
T ss_pred hCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 3455555555554 678877763
No 12
>TIGR00271 uncharacterized hydrophobic domain. This domain is in a family of archaeal proteins that includes AF0785 of Archaeoglobus fulgidus and in several eubacterial proteins, including the much longer protein sll1151 from Synechocystis PCC6803.
Probab=51.90 E-value=1.9e+02 Score=28.14 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHHHHH
Q 010729 401 NWQLFLCVAVGLWAGLI 417 (502)
Q Consensus 401 ~~~~f~~~l~Gli~G~l 417 (502)
.|.+.++...|....+.
T Consensus 100 ~~dl~vAl~aG~Agala 116 (175)
T TIGR00271 100 FLSLIVAVLAGIAGSLS 116 (175)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 36666777777666553
No 13
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.69 E-value=17 Score=34.03 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccCCCcch
Q 010729 403 QLFLCVAVGLWAGLIIGFVTEYYTSNAYRYI 433 (502)
Q Consensus 403 ~~f~~~l~Gli~G~lIg~iTEYYTs~~y~PV 433 (502)
-.|...++||++|++||++.--+|-.++|-=
T Consensus 6 ~~W~~a~igLvvGi~IG~li~Rlt~~~~k~q 36 (138)
T COG3105 6 MTWEYALIGLVVGIIIGALIARLTNRKLKQQ 36 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcchhhhhH
Confidence 4578999999999999999999999888763
No 14
>COG4214 XylH ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]
Probab=46.51 E-value=1e+02 Score=33.51 Aligned_cols=106 Identities=14% Similarity=0.208 Sum_probs=58.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHhhccc--ccccCCCcccccccccccchhhhhhhHHHHHHHHHHHHHhhhhhhhh
Q 010729 85 ATSFLFTEYQYVGVFMIAFAILIFVFLGSVE--GFSTKGQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGMK 162 (502)
Q Consensus 85 A~AFL~~eYk~i~~~~vv~~vll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~taiaFllGa~~S~laGyiGM~ 162 (502)
---|...+||=+-...+++.+++..+....+ .|+-.......++++...+++...+.+-..|.+=.+.+++| |+-
T Consensus 231 ~~v~~ln~yrGvp~~vlv~~vl~~~~~fvt~rT~fGR~VyAiGGN~eAA~LSGInv~r~t~~vF~~mGvl~AiA---gli 307 (394)
T COG4214 231 GLVYVLNSYRGVPNPVLVLLVLLIVFTFVTTRTVFGRRVYAIGGNPEAARLSGINVERVTLLVFVIMGVLAAIA---GLI 307 (394)
T ss_pred HHHHHHhhccCCcHHHHHHHHHHHHHHHHhhhceeeeEEEEecCCHHHHHhcCCceeehhHHHHHHHHHHHHHH---HHH
Confidence 3457778897766666655555544322111 11111111222344455556655677778887655555554 566
Q ss_pred hhhhhhhhhHHHHhhchhHHHHhhccccchh
Q 010729 163 IATYANARTTLEARKSVGKAFIVAFRSGAVM 193 (502)
Q Consensus 163 vAt~ANvRTA~AA~~gl~~AL~vAFrgGsVm 193 (502)
.+.|-|.-|-+|-.-.==++..-||-||+-|
T Consensus 308 ~taRL~aatp~AG~g~ELdaIAA~fIGGtSl 338 (394)
T COG4214 308 LTARLNAATPSAGTGFELDAIAACFIGGTSL 338 (394)
T ss_pred HHHHhhcCCcCCCcchhHHHHHHHHhccccc
Confidence 7888887666553322226788888886653
No 15
>COG4709 Predicted membrane protein [Function unknown]
Probab=41.79 E-value=1.1e+02 Score=30.38 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccCC
Q 010729 405 FLCVAVGLWAGLIIGFVTEYYTSNA 429 (502)
Q Consensus 405 f~~~l~Gli~G~lIg~iTEYYTs~~ 429 (502)
....+.|+..++++-.+++||+--+
T Consensus 154 IGs~lLgl~~~~~if~iv~~~~rl~ 178 (195)
T COG4709 154 IGSLLLGLGLGIVIFAIVKYASRLT 178 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999999987543
No 16
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=39.68 E-value=3.6e+02 Score=28.08 Aligned_cols=100 Identities=18% Similarity=0.308 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccCcccccchhHHHHHH
Q 010729 329 LISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCV 408 (502)
Q Consensus 329 li~a~GIiaSiig~~~v~~~~~~~~~~~~~~aL~~g~~vS~~l~~v~~~~~~~~~lp~~~~~~~~g~~~~~~~~~~f~~~ 408 (502)
++...+++.-++|+.+.....+.++.++-.+..++++.. .++++++.. .|..+|..+. ...|..++.-
T Consensus 104 ~~G~~Al~liiiGv~lts~~~~~~~~~~~~~~~~kgi~~-Ll~stigy~--~Y~~~~~~~~---------~~~~~~~lPq 171 (269)
T PF06800_consen 104 IIGFLALVLIIIGVILTSYQDKKSDKSSSKSNMKKGILA-LLISTIGYW--IYSVIPKAFH---------VSGWSAFLPQ 171 (269)
T ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhHHHH-HHHHHHHHH--HHHHHHHhcC---------CChhHhHHHH
Confidence 445556677778887643211111111123567777774 344444433 3444554322 2358899999
Q ss_pred HHHHHHHHHHHhhhhhcccCCCcchHHHHHHHHHHH
Q 010729 409 AVGLWAGLIIGFVTEYYTSNAYRYIFKRSIRLSRSL 444 (502)
Q Consensus 409 l~Gli~G~lIg~iTEYYTs~~y~PVr~IA~~~~~Gl 444 (502)
.+|++.|.++-..-+ .+.++. |+..++++.|+
T Consensus 172 aiGm~i~a~i~~~~~---~~~~~~-k~~~~nil~G~ 203 (269)
T PF06800_consen 172 AIGMLIGAFIFNLFS---KKPFFE-KKSWKNILTGL 203 (269)
T ss_pred HHHHHHHHHHHhhcc---cccccc-cchHHhhHHHH
Confidence 999987655544322 111222 34455666666
No 17
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=39.47 E-value=99 Score=25.90 Aligned_cols=40 Identities=15% Similarity=0.356 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHhHHH----HHhhhhhHHHHHHHHHHHHHHHH
Q 010729 71 VAKCADIQSAISEGATS----FLFTEYQYVGVFMIAFAILIFVF 110 (502)
Q Consensus 71 ~~~m~eIa~~I~eGA~A----FL~~eYk~i~~~~vv~~vll~~~ 110 (502)
+++|++-|+..+..|.. +..+.||...+++.++.+++++.
T Consensus 40 t~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~i 83 (89)
T PF00957_consen 40 TEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIILII 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhHH
Confidence 56666667666666654 56677888777777666665543
No 18
>PRK01844 hypothetical protein; Provisional
Probab=39.44 E-value=69 Score=27.22 Aligned_cols=23 Identities=13% Similarity=0.062 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhe
Q 010729 13 ILVPVCAVVGIIFSLVQWFIVSR 35 (502)
Q Consensus 13 ~l~~~~~~~gl~~a~~~~~~v~~ 35 (502)
.+++++-++|++.++|.++...+
T Consensus 8 ~l~I~~li~G~~~Gff~ark~~~ 30 (72)
T PRK01844 8 LVGVVALVAGVALGFFIARKYMM 30 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777778777665544
No 19
>PRK06696 uridine kinase; Validated
Probab=38.67 E-value=12 Score=36.22 Aligned_cols=13 Identities=38% Similarity=0.756 Sum_probs=12.1
Q ss_pred CCCCCCCCccccc
Q 010729 266 IPEDDPRNPAVIA 278 (502)
Q Consensus 266 IPEDDPRNPAVIA 278 (502)
|+.+||+||++++
T Consensus 207 i~n~~~~~p~~~~ 219 (223)
T PRK06696 207 IDNSDPANPRLLF 219 (223)
T ss_pred EECCCCCCCeeec
Confidence 8999999999986
No 20
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=38.16 E-value=29 Score=31.72 Aligned_cols=25 Identities=40% Similarity=0.591 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhhhhhcccCCCcc
Q 010729 408 VAVGLWAGLIIGFVTEYYTSNAYRY 432 (502)
Q Consensus 408 ~l~Gli~G~lIg~iTEYYTs~~y~P 432 (502)
+++|+++|++||++.-.+|+.+.+-
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~~~~ 26 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSNQQK 26 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccchhh
Confidence 4678888999998888888866543
No 21
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=37.86 E-value=6.5e+02 Score=28.56 Aligned_cols=79 Identities=13% Similarity=0.057 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcc-ccccccCcccccch-h--HHHHHHHHHHHHHHHHHhhhhhcccCCCcchHH
Q 010729 360 SLKKQLIISTVLMTVGIAIVSWIGLPSS-FTIYNFGAQKVVKN-W--QLFLCVAVGLWAGLIIGFVTEYYTSNAYRYIFK 435 (502)
Q Consensus 360 aL~~g~~vS~~l~~v~~~~~~~~~lp~~-~~~~~~g~~~~~~~-~--~~f~~~l~Gli~G~lIg~iTEYYTs~~y~PVr~ 435 (502)
.=|||+..+.+..++....+....+|+. +.-...+....... . -+.+-.+.-++.|+.-|+.+.-|++. |+
T Consensus 252 ~EkkgLr~Agi~~l~~lall~ll~iP~~a~LR~~~tG~l~~SPf~~gIIpiI~l~F~i~GivYG~~sG~iks~-----~D 326 (502)
T PF03806_consen 252 REKKGLRWAGIALLAFLALLLLLLIPENAPLRSPETGSLFPSPFMKGIIPIIFLFFLIPGIVYGIASGTIKSD-----KD 326 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCccccCCCCCcccCChHHHhHHHHHHHHHHHHHHHHhhhhceecCH-----HH
Confidence 4456666665555444444555667762 22110111111111 1 13445566677899999888877665 88
Q ss_pred HHHHHHHH
Q 010729 436 RSIRLSRS 443 (502)
Q Consensus 436 IA~~~~~G 443 (502)
+.+...+|
T Consensus 327 v~~~M~~~ 334 (502)
T PF03806_consen 327 VVKMMSKG 334 (502)
T ss_pred HHHHHHHH
Confidence 87754333
No 22
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=37.79 E-value=15 Score=42.81 Aligned_cols=16 Identities=56% Similarity=0.845 Sum_probs=14.2
Q ss_pred CCCCCCCCCccccccc
Q 010729 265 NIPEDDPRNPAVIADN 280 (502)
Q Consensus 265 gIPEDDPRNPAVIADN 280 (502)
=|-||||||||=||..
T Consensus 794 ~I~DhDPR~paYIAtQ 809 (1004)
T KOG0793|consen 794 PIMDHDPRNPAYIATQ 809 (1004)
T ss_pred ccccCCCCccceeecc
Confidence 3789999999999986
No 23
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=37.76 E-value=1.8e+02 Score=25.98 Aligned_cols=34 Identities=15% Similarity=0.335 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccCCCcchHHH
Q 010729 403 QLFLCVAVGLWAGLIIGFVTEYYTSNAYRYIFKR 436 (502)
Q Consensus 403 ~~f~~~l~Gli~G~lIg~iTEYYTs~~y~PVr~I 436 (502)
+-++..+..++.|.++|..+-.|..++....++.
T Consensus 42 ~~~~~~~~~~~ig~~~gl~s~if~~e~~s~~~~~ 75 (136)
T PF11457_consen 42 SSILSVLVAVLIGAVFGLASLIFEIERWSLLKQT 75 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccchhHHHHH
Confidence 4455555556788888888888888666644443
No 24
>PF04911 ATP-synt_J: ATP synthase j chain; InterPro: IPR006995 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit J found in the F0 complex of F-ATPases from fungal mitochondria. This subunit does not appear to display sequence similarity with subunits of F-ATPases found in other organisms []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o)
Probab=37.17 E-value=14 Score=29.70 Aligned_cols=7 Identities=71% Similarity=1.426 Sum_probs=5.5
Q ss_pred CCCCCcc
Q 010729 269 DDPRNPA 275 (502)
Q Consensus 269 DDPRNPA 275 (502)
.|||||-
T Consensus 39 NDPRNP~ 45 (54)
T PF04911_consen 39 NDPRNPR 45 (54)
T ss_pred cCCCChh
Confidence 6888884
No 25
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.62 E-value=45 Score=30.58 Aligned_cols=35 Identities=14% Similarity=0.157 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccCCCcchHHHHH
Q 010729 402 WQLFLCVAVGLWAGLIIGFVTEYYTSNAYRYIFKRSI 438 (502)
Q Consensus 402 ~~~f~~~l~Gli~G~lIg~iTEYYTs~~y~PVr~IA~ 438 (502)
+.+-.=.+.|.++|+.|||++++|-.+ +|---|.-
T Consensus 46 ~klssefIsGilVGa~iG~llD~~agT--sPwglIv~ 80 (116)
T COG5336 46 FKLSSEFISGILVGAGIGWLLDKFAGT--SPWGLIVF 80 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC--CcHHHHHH
Confidence 455556677888888888888888766 77765554
No 26
>TIGR03434 ADOP Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.
Probab=34.25 E-value=3.5e+02 Score=30.94 Aligned_cols=86 Identities=10% Similarity=0.084 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHHhHHH-----HHhhhhhHHHHHHHHHHHHHHHHhhcc-cccccCCCcccccccccccchhhhhhhHHH
Q 010729 71 VAKCADIQSAISEGATS-----FLFTEYQYVGVFMIAFAILIFVFLGSV-EGFSTKGQACTYDQQKMCKPALATAAFSTV 144 (502)
Q Consensus 71 ~~~m~eIa~~I~eGA~A-----FL~~eYk~i~~~~vv~~vll~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~tai 144 (502)
.+|.|||+-.-.-||.. -+.+|+-.+..+..++++.+...+..+ ..+... .+.. ..+...+
T Consensus 705 ~~R~rEiai~kalGas~~~I~~~~l~E~~~l~~ig~~lg~~l~~~~~~~l~~~~~~------------~~~~-~~~~~~~ 771 (803)
T TIGR03434 705 AQRTREIGIRMALGAQRGDVLRLVLRQGLRLAAAGLAIGLAAALALARLLASLLFG------------VSPT-DPLTFAA 771 (803)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------------CCCC-CHHHHHH
Confidence 57889999888888875 566788888877777777665543210 000000 0000 1123345
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhh
Q 010729 145 SFLLGAITSVLSGFLGMKIATYANA 169 (502)
Q Consensus 145 aFllGa~~S~laGyiGM~vAt~ANv 169 (502)
++++..+.+.+++++--+-+.|.|.
T Consensus 772 ~~~~~~~i~ll~~~~pa~~a~~~~p 796 (803)
T TIGR03434 772 VAALLLAVALLACYLPARRAARVDP 796 (803)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 5666777888888888777777765
No 27
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=31.53 E-value=2.5e+02 Score=30.58 Aligned_cols=95 Identities=15% Similarity=0.198 Sum_probs=51.8
Q ss_pred eehHhHHHHHHHHHHHHHHHHhhhhhhhhc-cccCh----HHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccCccc
Q 010729 323 SMLYPLLISSIGILVCLITTLFATDIFEVK-AVKEI----EPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQK 397 (502)
Q Consensus 323 ~v~~PLli~a~GIiaSiig~~~v~~~~~~~-~~~~~----~~aL~~g~~vS~~l~~v~~~~~~~~~lp~~~~~~~~g~~~ 397 (502)
.++.|+++..-|=..+...+..+|.+.... +.++. .|-+..|+..+.++.++...+ .+++. .... .|
T Consensus 316 ~~~iP~i~~~~Gn~G~qs~~~~~r~l~~g~i~~~~~~~~~~~e~~v~~~~g~~~g~~~~~~-~~~~~-~~~~---~~--- 387 (449)
T TIGR00400 316 ANFIPLLMDTSGNAGSQSSAVVIRGLALETVKVKDFFKVILREICVSILVGAILASVNFLR-IVFFQ-GKLL---IA--- 387 (449)
T ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHc-CCch---HH---
Confidence 467999999988888888888776542111 11222 244445555554444433332 33321 1000 00
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhhhhc
Q 010729 398 VVKNWQLFLCVAVGLWAGLIIGFVTEYY 425 (502)
Q Consensus 398 ~~~~~~~f~~~l~Gli~G~lIg~iTEYY 425 (502)
......++..++++.+.|.++.++...+
T Consensus 388 ~~v~~~~~~~~~~~~~~G~~lp~~~~k~ 415 (449)
T TIGR00400 388 FVVSSSLFVSLTVAKILGGLLPIVAKLL 415 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0112346677777777888887777664
No 28
>PF14393 DUF4422: Domain of unknown function (DUF4422)
Probab=31.16 E-value=24 Score=35.56 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=15.4
Q ss_pred CCCcccccccccCcccccc
Q 010729 271 PRNPAVIADNVGDNVGDIA 289 (502)
Q Consensus 271 PRNPAVIADNVGDNVGDvA 289 (502)
.+++..+-||.|||.=|-.
T Consensus 30 ~~~~~~~~DdtGdNIS~kN 48 (231)
T PF14393_consen 30 KMDLGYQGDDTGDNISDKN 48 (231)
T ss_pred CccCCCCCCCCCCchhhhC
Confidence 5678899999999987644
No 29
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=31.13 E-value=8.3e+02 Score=27.77 Aligned_cols=38 Identities=8% Similarity=0.014 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhcccCCCcchHHHHHHHHHH
Q 010729 401 NWQLFLCVAVGLWAGLIIGFVTEYYTSNAYRYIFKRSIRLSRS 443 (502)
Q Consensus 401 ~~~~f~~~l~Gli~G~lIg~iTEYYTs~~y~PVr~IA~~~~~G 443 (502)
.|-+..-.+.=++.|++.|+++.-+.+. +++++...+|
T Consensus 304 ~~iipii~~~Fli~givyG~~~g~ik~~-----~di~~~m~~g 341 (513)
T TIGR00819 304 KGIVPFIFLFFALPGIAYGIATRSIRGE-----ADLPHAMAEP 341 (513)
T ss_pred HhHHHHHHHHHHHHHHHHHhhcCccCCH-----HHHHHHHHHH
Confidence 3555555566677889999988776554 8888864443
No 30
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=30.49 E-value=3.8e+02 Score=23.68 Aligned_cols=49 Identities=12% Similarity=0.128 Sum_probs=26.6
Q ss_pred hhhHhhHHHHHHHHHHHHHhhcCC--ccccceehHhHHHHHHHHHHHHHHH
Q 010729 294 DLFGSYAESSCAALVVASISSFGI--NHEFTSMLYPLLISSIGILVCLITT 342 (502)
Q Consensus 294 DLFESy~~siiAAmvlg~~~~~~~--~~~~~~v~~PLli~a~GIiaSiig~ 342 (502)
|+.-+.+-..+++..+-....+.. .+....-.+|.++..+.++.|++-.
T Consensus 3 d~i~~~~~~~~~~~~~~~a~~~~~~~~~~~gp~~fP~~l~~~l~~~~~~l~ 53 (141)
T PF07331_consen 3 DLIIGLVFLAFGAVFLYQAFQIPSFPSGSPGPGFFPRLLGILLLILSLLLL 53 (141)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCccccCCCCChHHHHHHHHHHHHHHHHHH
Confidence 555555554444443332221211 1123346799999988888777644
No 31
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=29.60 E-value=4.5e+02 Score=25.67 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccCCCcchHHHHHHHHHHH
Q 010729 402 WQLFLCVAVGLWAGLIIGFVTEYYTSNAYRYIFKRSIRLSRSL 444 (502)
Q Consensus 402 ~~~f~~~l~Gli~G~lIg~iTEYYTs~~y~PVr~IA~~~~~Gl 444 (502)
+.+++++++.+++=.++|++.-++|.. +|.|+..+.+.-|+
T Consensus 161 ~a~~~s~~~~~~~L~~~G~~~a~~~~~--~~~~~~l~~~~~G~ 201 (213)
T PF01988_consen 161 EAFIASIAVTILALFILGYFKARISGQ--SWWRSGLEMLLIGL 201 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHH
Confidence 456667777776666777777777664 78888888765555
No 32
>COG1422 Predicted membrane protein [Function unknown]
Probab=28.83 E-value=2.3e+02 Score=28.42 Aligned_cols=34 Identities=9% Similarity=0.141 Sum_probs=27.5
Q ss_pred cchhhhHHHHHHHHHHHHhHHHHHhhhhhHHHHH
Q 010729 66 NDQSVVAKCADIQSAISEGATSFLFTEYQYVGVF 99 (502)
Q Consensus 66 ~~~~~~~~m~eIa~~I~eGA~AFL~~eYk~i~~~ 99 (502)
+|.+.-||+||...-+++==+.+++.|.|-+.+.
T Consensus 95 ~d~~~lkkLq~~qmem~~~Q~elmk~qfkPM~~~ 128 (201)
T COG1422 95 GDMKKLKKLQEKQMEMMDDQRELMKMQFKPMLYI 128 (201)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3556678999999999999999999999955543
No 33
>PRK00523 hypothetical protein; Provisional
Probab=27.93 E-value=1.3e+02 Score=25.53 Aligned_cols=22 Identities=18% Similarity=-0.013 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhe
Q 010729 14 LVPVCAVVGIIFSLVQWFIVSR 35 (502)
Q Consensus 14 l~~~~~~~gl~~a~~~~~~v~~ 35 (502)
+++++-++|++.++|.++...+
T Consensus 10 l~i~~li~G~~~Gffiark~~~ 31 (72)
T PRK00523 10 LGIPLLIVGGIIGYFVSKKMFK 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567777777777665544
No 34
>TIGR01185 devC DevC protein. This model describes a predicted membrane subunit, DevC, of an ABC transporter known so far from two species of cyanobacteria. Some experimental data from mutational analysis suggest that this protein along with DevA and DevB encoded in the same operon may be involved in the transport/export of glycolipids.
Probab=27.67 E-value=4.6e+02 Score=27.87 Aligned_cols=35 Identities=9% Similarity=0.157 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHhHHH-HHhhhhhHHHHHHHHHHH
Q 010729 71 VAKCADIQSAISEGATS-FLFTEYQYVGVFMIAFAI 105 (502)
Q Consensus 71 ~~~m~eIa~~I~eGA~A-FL~~eYk~i~~~~vv~~v 105 (502)
.||.+||+-.=.-||.. ++.+++-.=+.+..++..
T Consensus 285 ~er~~EigiLrAlGa~~~~I~~~~l~Ea~ll~~iG~ 320 (380)
T TIGR01185 285 ADHLSEYATLKAIGYTQKYLLGVILQEALLLACLGY 320 (380)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 68999999998888865 555555543333333333
No 35
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.83 E-value=2.1e+02 Score=26.38 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhHHHH------Hhhhh
Q 010729 72 AKCADIQSAISEGATSF------LFTEY 93 (502)
Q Consensus 72 ~~m~eIa~~I~eGA~AF------L~~eY 93 (502)
+.+++=|+..++||..| |+|+|
T Consensus 60 ~~L~drad~L~~~as~F~~~A~klkrk~ 87 (116)
T KOG0860|consen 60 DELDDRADQLQAGASQFEKTAVKLKRKM 87 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677899999988 56665
No 36
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=24.02 E-value=3.6e+02 Score=27.53 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccCCCcc
Q 010729 405 FLCVAVGLWAGLIIGFVTEYYTSNAYRY 432 (502)
Q Consensus 405 f~~~l~Gli~G~lIg~iTEYYTs~~y~P 432 (502)
|++++.|++.|++|..+-.|-.|+..+.
T Consensus 46 ~~ai~~glvwgl~I~~lDR~ivss~~~~ 73 (301)
T PF14362_consen 46 WAAIPFGLVWGLVIFNLDRFIVSSIRKS 73 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 8899999999999999999887765544
No 37
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=23.36 E-value=30 Score=33.06 Aligned_cols=11 Identities=45% Similarity=0.431 Sum_probs=10.0
Q ss_pred ccccCCCCCCC
Q 010729 261 KVERNIPEDDP 271 (502)
Q Consensus 261 KVEagIPEDDP 271 (502)
|||-||||+|+
T Consensus 64 ~VeiGi~Eksl 74 (150)
T COG3086 64 KVELGIEEKSL 74 (150)
T ss_pred EEEEccCcccH
Confidence 69999999985
No 38
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=23.30 E-value=7.2e+02 Score=26.62 Aligned_cols=17 Identities=24% Similarity=0.114 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHHHHH
Q 010729 401 NWQLFLCVAVGLWAGLI 417 (502)
Q Consensus 401 ~~~~f~~~l~Gli~G~l 417 (502)
.|.+.++...|....+-
T Consensus 209 ~~~l~vAl~aG~AGals 225 (325)
T TIGR00341 209 PVSEILAVLAGIAGILS 225 (325)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46666777777444433
No 39
>PF05072 Herpes_UL43: Herpesvirus UL43 protein; InterPro: IPR007764 UL43 genes are expressed with true-late (gamma2) kinetics and have been identified as a virion tegument component []. Studies suggest that the N-terminal sequences target UL43 to protein aggregates and that C-terminal sequences are important for incorporation into particles.; GO: 0016020 membrane, 0019033 viral tegument
Probab=22.36 E-value=1e+03 Score=26.04 Aligned_cols=161 Identities=20% Similarity=0.183 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhHhHHhhcchHHHHHHHHHHhccccccccccccccc-------------
Q 010729 193 MGFLLAANGLLVLFIAINLFKLYYGDDWEGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLV------------- 259 (502)
Q Consensus 193 mGl~vvglgLlgl~~~~~~~~~~~~~~~~~~~~~i~Gfg~GaS~iALFaRVGGGIYTKAADVGADLV------------- 259 (502)
++|.+..+|.+.=....+.. .+...++++|+..++ -|-+.|.|+||-
T Consensus 140 ~~ll~~~~G~~lG~sa~~~~-----------~~~~~~~gl~~ai~~---------~~~~~da~~~l~dTC~Yr~~R~~~l 199 (373)
T PF05072_consen 140 AALLVMTGGTLLGISAPYWW-----------INPEAAIGLGAAIVA---------ITSARDAGAALRDTCHYRACRYATL 199 (373)
T ss_pred HHHHHHHHHHHhheeeeeec-----------cchhHHHHHHHHHHH---------HHHHhhhHHHHhccceeecchHhhc
Q ss_pred ------cccccCCCCCCCCCcccccccccCcccccccccchhhHhhHHHHHHHHHHHHHhhcCCccccceehHhHHHHHH
Q 010729 260 ------GKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTSMLYPLLISSI 333 (502)
Q Consensus 260 ------GKVEagIPEDDPRNPAVIADNVGDNVGDvAGMGADLFESy~~siiAAmvlg~~~~~~~~~~~~~v~~PLli~a~ 333 (502)
|. +.-.|+|||.++--=+-.-=|-..+-+.++--++=+.+..+.+..+-+-....+..+..+.-..-++....
T Consensus 200 rt~~dlGr-~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~plv~~~~tp~iwa~~~~~~~~~~~~~~~t~~~~~i~ 278 (373)
T PF05072_consen 200 RTPTDLGR-GVLPPPADPPGTREEAVSSRDVAKGFKAHPEHIWLPLVTFLATPAIWAVSRRMGRGNKWQTPRTWLLVFIG 278 (373)
T ss_pred CCcCCCCC-cCCCCCCCCCCccccCCchhhhccccccCccccHHHHHHHHHHHHHHHHHHHhccCCCCCChHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhhhhhhccccChHHHHHHHHHHHHHHHHHHHHH
Q 010729 334 GILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAI 378 (502)
Q Consensus 334 GIiaSiig~~~v~~~~~~~~~~~~~~aL~~g~~vS~~l~~v~~~~ 378 (502)
|-++-....++ ++.+..++..+.+..-.....++.+++.++
T Consensus 279 Gh~va~~~~l~----~~~~~~~~l~~~lli~h~~~~~~~~~L~~~ 319 (373)
T PF05072_consen 279 GHLVAALLELC----QRYSYRRDLSRPLLIAHIILQALAIALALF 319 (373)
T ss_pred HHHHHHHHHHH----HHhcchHHHHHHHHHHHHHHHHHHHHHHHh
No 40
>PF10389 CoatB: Bacteriophage coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 2IFO_A.
Probab=22.05 E-value=1.9e+02 Score=22.63 Aligned_cols=30 Identities=27% Similarity=0.371 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhe
Q 010729 6 LSELATEILVPVCAVVGIIFSLVQWFIVSR 35 (502)
Q Consensus 6 ~s~~~~~~l~~~~~~~gl~~a~~~~~~v~~ 35 (502)
+++..+-...+...+++++.++..|+|++|
T Consensus 15 i~~a~t~i~~ig~avL~v~V~i~v~kwiRr 44 (46)
T PF10389_consen 15 ISAAKTDIATIGGAVLGVIVGIAVYKWIRR 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555566667789999999999999988
No 41
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=21.99 E-value=1.5e+02 Score=24.74 Aligned_cols=21 Identities=10% Similarity=0.047 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHhee
Q 010729 16 PVCAVVGIIFSLVQWFIVSRV 36 (502)
Q Consensus 16 ~~~~~~gl~~a~~~~~~v~~i 36 (502)
+++-++|++.++|.+++..+.
T Consensus 4 ilali~G~~~Gff~ar~~~~k 24 (64)
T PF03672_consen 4 ILALIVGAVIGFFIARKYMEK 24 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444566777777776666553
No 42
>PF08098 ATX_III: Anemonia sulcata toxin III family; InterPro: IPR012509 This entry occurs within the Anemonia sulcata toxin III (ATX III) neurotoxin family. ATX III is a neurotoxin that is produced by sea anemone; it adopts a compact structure containing four reverse turns and two other chain reversals, but no regular alpha-helix or beta-sheet. A hydrophobic patch found on the surface of the peptide may constitute part of the sodium channel binding surface [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0042151 nematocyst; PDB: 1ANS_A.
Probab=21.57 E-value=39 Score=23.44 Aligned_cols=10 Identities=30% Similarity=0.241 Sum_probs=4.3
Q ss_pred cccceeeecc
Q 010729 482 PCLGIQICHH 491 (502)
Q Consensus 482 ~~~~~~~~~~ 491 (502)
-|.=-|-|||
T Consensus 14 gC~WGQ~~~~ 23 (27)
T PF08098_consen 14 GCPWGQNCYP 23 (27)
T ss_dssp T-SSS-SS-S
T ss_pred CCcccccccc
Confidence 3555677777
No 43
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=21.18 E-value=6.7e+02 Score=27.01 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=19.8
Q ss_pred HHHHhhhhhcccCCCcchHHHHH
Q 010729 416 LIIGFVTEYYTSNAYRYIFKRSI 438 (502)
Q Consensus 416 ~lIg~iTEYYTs~~y~PVr~IA~ 438 (502)
..+|.+++-|...+.+.-|.+..
T Consensus 277 ~~~G~iid~~l~~~~~~~~~i~~ 299 (344)
T PF04123_consen 277 ASLGKIIDEYLRRDFRLWRYINA 299 (344)
T ss_pred HHHHHHHHHHHccCcchHHHHHH
Confidence 77899999999998887888876
No 44
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=20.29 E-value=3.5e+02 Score=21.68 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccCCCcchHHHHH
Q 010729 402 WQLFLCVAVGLWAGLIIGFVTEYYTSNAYRYIFKRSI 438 (502)
Q Consensus 402 ~~~f~~~l~Gli~G~lIg~iTEYYTs~~y~PVr~IA~ 438 (502)
+.+||+.+.|.++|.+.+-.++- +|.|.+..--
T Consensus 5 vt~fWs~il~~vvgyI~ssL~~~----~~n~~~~~Ii 37 (57)
T PF11151_consen 5 VTFFWSFILGEVVGYIGSSLTGV----TYNFTTAAII 37 (57)
T ss_pred ehhHHHHHHHHHHHHHHHHHhCC----CCChHHHHHH
Confidence 34667777777777777777665 3455554333
No 45
>cd06580 TM_PBP1_transp_TpRbsC_like Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Probab=20.10 E-value=7e+02 Score=24.49 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=37.9
Q ss_pred ccccccccccchhhhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhh--hhHHHHhhchhHHHHhhc-cccchhHHHHHHH
Q 010729 124 CTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGMKIATYANA--RTTLEARKSVGKAFIVAF-RSGAVMGFLLAAN 200 (502)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~taiaFllGa~~S~laGyiGM~vAt~ANv--RTA~AA~~gl~~AL~vAF-rgGsVmGl~vvgl 200 (502)
...|++.....++........+|.+++.+.+++|-+ .+.+.+. -.......++ +++.++. .||++.|-.+.++
T Consensus 124 i~~n~~~A~~~Gi~v~~~~~~af~is~~laglaG~l---~a~~~~~~~~~~~~~~~~~-~~l~~~vlGggs~~G~viGal 199 (234)
T cd06580 124 VGENPRAARYAGINVKRVRLLAMLISGALAGLAGAY---LVLGVQGRFTEGMSAGYGF-IAIAVALLGRWNPLGILLAAL 199 (234)
T ss_pred ccCCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH---HHHhccceeecCCCCCcCH-HHHHHHHHhCCChHHHHHHHH
Confidence 333444444455555567889999988877777633 3322221 1111111222 4544444 4577777555444
Q ss_pred H
Q 010729 201 G 201 (502)
Q Consensus 201 g 201 (502)
-
T Consensus 200 ~ 200 (234)
T cd06580 200 L 200 (234)
T ss_pred H
Confidence 3
Done!