Query 010729
Match_columns 502
No_of_seqs 153 out of 749
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 13:01:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010729.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010729hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a01_A Proton pyrophosphatase; 100.0 3E-137 1E-141 1116.6 34.2 462 1-462 1-473 (766)
2 4av3_A K(+)-stimulated pyropho 100.0 1E-123 3E-128 1019.2 30.5 389 11-462 12-440 (735)
3 1ans_A Neurotoxin III; NMR {An 56.7 3.8 0.00013 27.3 1.0 24 473-499 1-24 (27)
4 3hd7_A Vesicle-associated memb 28.4 90 0.0031 25.7 5.3 40 71-110 42-85 (91)
5 2g04_A Probable fatty-acid-COA 25.6 19 0.00066 36.6 0.9 18 252-272 29-46 (359)
6 2zy9_A Mg2+ transporter MGTE; 21.8 5.6E+02 0.019 26.4 11.2 56 324-379 341-401 (473)
7 2ca5_A MXIH; transport protein 19.6 14 0.00047 31.0 -1.3 10 269-278 39-48 (85)
8 4sgb_I Potato inhibitor, PCI-1 18.6 34 0.0012 26.1 0.8 9 268-276 27-35 (51)
9 1hae_A Heregulin-alpha; growth 17.9 20 0.00068 27.1 -0.7 29 473-501 4-40 (63)
10 2ifo_A Inovirus; helical virus 17.2 1.8E+02 0.0061 21.7 4.4 29 7-35 16-44 (46)
No 1
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton pumping; HET: DMU; 2.35A {Vigna radiata}
Probab=100.00 E-value=2.9e-137 Score=1116.64 Aligned_cols=462 Identities=78% Similarity=1.251 Sum_probs=397.3
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHheeccCCCCCCCCCCCCCCCCcchhhhhhhcccchhhhHHHHHHHHH
Q 010729 1 MGSTLLSELATEILVPVCAVVGIIFSLVQWFIVSRVRLTHERPPSSNSDKKNGFNDYLIEEEEGINDQSVVAKCADIQSA 80 (502)
Q Consensus 1 ~~~~~~s~~~~~~l~~~~~~~gl~~a~~~~~~v~~i~i~~~~~~~~~~~~~~g~~~~l~~~~~G~~~~~~~~~m~eIa~~ 80 (502)
||.+++++.....++|+++++|++||+++|++|+|+|+++++..+.+++++||++||+.|+++|.+++++.+||||||++
T Consensus 1 ~~~~~~~~~~~~~~i~~~~~~Gi~fa~~~~~~vs~v~~~~~~~~~~~~~~~~g~~~~l~~~~~g~~~~~~~~~m~eIa~a 80 (766)
T 4a01_A 1 MGAAILPDLGTEILIPVCAVIGIAFALFQWLLVSKVKLSAVRDASPNAAAKNGYNDYLIEEEEGINDHNVVVKCAEIQNA 80 (766)
T ss_dssp -CCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCC-------------------------CCHHHHHHHHHHHH
T ss_pred CCcchhhhhhhhhHhHHHHHHHHHHHHHHHHheEeEEecCCccccccccccCCcccccchhhcccchHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999753211223346889999999999998888999999999999
Q ss_pred HHHhHHHHHhhhhhHHHHHHHHHHHHHHHHhhcccccccCCCcccccccccccchhhhhhhHHHHHHHHHHHHHhhhhhh
Q 010729 81 ISEGATSFLFTEYQYVGVFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLG 160 (502)
Q Consensus 81 I~eGA~AFL~~eYk~i~~~~vv~~vll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~taiaFllGa~~S~laGyiG 160 (502)
|||||+|||+||||++++|+++++++|+++++..+.++.+.|++..++++.+.+.+..+++++++|++|+++|.++||+|
T Consensus 81 I~eGA~afL~rqYk~i~~~~vv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Fl~Ga~~S~~aG~iG 160 (766)
T 4a01_A 81 ISEGATSFLFTEYKYVGIFMVAFAILIFLFLGSVEGFSTSPQACSYDKTKTCKPALATAIFSTVSFLLGGVTSLVSGFLG 160 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCCCCEEETTEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988766545566677777777777777777777899999999999999999999
Q ss_pred hhhhhhhhhhhHHHHhhchhHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhHhHHhhcchHHHHHHH
Q 010729 161 MKIATYANARTTLEARKSVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGDDWEGLFEAITGYGLGGSSMALF 240 (502)
Q Consensus 161 M~vAt~ANvRTA~AA~~gl~~AL~vAFrgGsVmGl~vvglgLlgl~~~~~~~~~~~~~~~~~~~~~i~Gfg~GaS~iALF 240 (502)
||+|||||+|||+|||+|+++||++|||||+||||+|+|||||+++++|++|..++++++.+.++++.||+||+|++|||
T Consensus 161 M~vat~ANvRtA~AA~~gl~~al~vAfr~GaVmGl~vvglgLlgl~~~~~~~~~~~~~~~~~~~~~l~Gfg~GaS~iAlF 240 (766)
T 4a01_A 161 MKIATYANARTTLEARKGVGKAFITAFRSGAVMGFLLAANGLLVLYIAINLFKIYYGDDWGGLFEAITGYGLGGSSMALF 240 (766)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHhhcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998887656666667789999999999999999
Q ss_pred HHHhccccccccccccccccccccCCCCCCCCCcccccccccCcccccccccchhhHhhHHHHHHHHHHHHHhhcCCccc
Q 010729 241 GRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHE 320 (502)
Q Consensus 241 aRVGGGIYTKAADVGADLVGKVEagIPEDDPRNPAVIADNVGDNVGDvAGMGADLFESy~~siiAAmvlg~~~~~~~~~~ 320 (502)
+||||||||||||||||||||||+|||||||||||||||||||||||||||||||||||++|++|||+|++...++...+
T Consensus 241 aRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPAvIADnVGDNVGD~AGmgADLFESy~~t~iaamvlg~~~~~~~~~~ 320 (766)
T 4a01_A 241 GRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGLNHE 320 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCCTTCTTCTTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHTSHHHHTTC
T ss_pred HHhccchhhhhhhhccccccccccCCCCcCCCCcchhhhhhccccccccccchhHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998642222223
Q ss_pred cceehHhHHHHHHHHHHHHHHHHhhhhhhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccCcccccc
Q 010729 321 FTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVK 400 (502)
Q Consensus 321 ~~~v~~PLli~a~GIiaSiig~~~v~~~~~~~~~~~~~~aL~~g~~vS~~l~~v~~~~~~~~~lp~~~~~~~~g~~~~~~ 400 (502)
+..++|||+++++||++|++|++++|+++|.++++|+|++||+|+++|++++++++|+++++++|+++.....+.+....
T Consensus 321 ~~~v~~PL~i~a~gii~siig~~~v~~~~~~~~~~~~~~aL~~g~~~s~il~~v~~~~~~~~~l~~~~~~~~~~~~~~~~ 400 (766)
T 4a01_A 321 LTAMLYPLIVSSVGILVCLLTTLFATDFFEIKAVKEIEPALKKQLVISTVLMTIGVAVVSFVALPTSFTIFNFGVQKDVK 400 (766)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHTTCCCCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSEEEEEETTEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHhheeEeeccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccch
Confidence 45699999999999999999999998777777888999999999999999999999999999999876544333333456
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhcccCCCcchHHHHHH--------HHHHHHH---HhhHHHHHHHHHhhcc
Q 010729 401 NWQLFLCVAVGLWAGLIIGFVTEYYTSNAYRYIFKRSIR--------LSRSLIV---SLEFPVLTLCLLYLQP 462 (502)
Q Consensus 401 ~~~~f~~~l~Gli~G~lIg~iTEYYTs~~y~PVr~IA~~--------~~~Gl~~---s~~~Pvl~I~~ai~~~ 462 (502)
+|++|+|+++|+++|++|+++||||||++|||||+||++ +|+||++ |+.+|+++|+++|+.+
T Consensus 401 ~~~~f~~~~~Gl~~g~lI~~iTeYyTs~~~~PV~~IA~aS~TG~ATnII~GlavGm~St~~Pvl~i~~ai~~s 473 (766)
T 4a01_A 401 SWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAISIFVS 473 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHGGGCHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHhCcCchhhHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999996 6789966 5569999999999998
No 2
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=100.00 E-value=9.8e-124 Score=1019.16 Aligned_cols=389 Identities=36% Similarity=0.541 Sum_probs=329.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHheeccCCCCCCCCCCCCCCCCcchhhhhhhcccchhhhHHHHHHHHHHHHhHHHHHh
Q 010729 11 TEILVPVCAVVGIIFSLVQWFIVSRVRLTHERPPSSNSDKKNGFNDYLIEEEEGINDQSVVAKCADIQSAISEGATSFLF 90 (502)
Q Consensus 11 ~~~l~~~~~~~gl~~a~~~~~~v~~i~i~~~~~~~~~~~~~~g~~~~l~~~~~G~~~~~~~~~m~eIa~~I~eGA~AFL~ 90 (502)
...+.++.++++|+|++++++||+|+ |+| +||||||+++|||||+|||+
T Consensus 12 v~~l~~~~~i~~l~~a~~~~~~v~~~-------------------------~~G------~~~M~eIa~~I~eGA~afL~ 60 (735)
T 4av3_A 12 VAALFFLIPLVALGFAAANFAAVVRK-------------------------PEG------TERMKEISSYIRSGADSFLA 60 (735)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHTS-------------------------CC-------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC-------------------------CCC------CHHHHHHHHHHHHHHHHHHH
Confidence 34555667899999999999999883 445 89999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhcccccccCCCcccccccccccchhhhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 010729 91 TEYQYVGVFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGMKIATYANAR 170 (502)
Q Consensus 91 ~eYk~i~~~~vv~~vll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~taiaFllGa~~S~laGyiGM~vAt~ANvR 170 (502)
||||++++|+++++++++++. +|+++++|++|+++|++|||+|||+|||||+|
T Consensus 61 rqyk~i~~~~vv~~~ll~~~~---------------------------~~~~ai~Fl~Ga~~S~~aGyiGM~vAt~ANvR 113 (735)
T 4av3_A 61 HETKAIFKVAIVIAILLMIFT---------------------------TWQTGVAFLLGAVMSASAGIVGMKMATRANVR 113 (735)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh---------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987753 35799999999999999999999999999999
Q ss_pred hHHHHhh--chhHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHhhcCC-------------CchhhhHhHHhhcchHH
Q 010729 171 TTLEARK--SVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGD-------------DWEGLFEAITGYGLGGS 235 (502)
Q Consensus 171 TA~AA~~--gl~~AL~vAFrgGsVmGl~vvglgLlgl~~~~~~~~~~~~~-------------~~~~~~~~i~Gfg~GaS 235 (502)
||+|||+ ++++||++|||||+||||+|+||+||+++++|++|..++++ +..+.++++.||+||||
T Consensus 114 TA~AA~~s~~l~~aL~vAFrgGaVmGl~vvgl~Llgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Gfg~GaS 193 (735)
T 4av3_A 114 VAEAARTTKKIGPALKVAYQGGSVMGLSVGGFALLGLVLVYLIFGKWMGQVDNLNIYTNWLGINFVPFAMTVSGYALGCS 193 (735)
T ss_dssp HHHHTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHCSCEECTTSCEECHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCccHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccchhhhHHHhhhchhHH
Confidence 9999984 69999999999999999999999999999999887543221 12345678999999999
Q ss_pred HHHHHHHHhccccccccccccccccccccCCCCCCCCCcccccccccCcccccccccchhhHhhHHHHHHHHHHHHHhhc
Q 010729 236 SMALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSF 315 (502)
Q Consensus 236 ~iALFaRVGGGIYTKAADVGADLVGKVEagIPEDDPRNPAVIADNVGDNVGDvAGMGADLFESy~~siiAAmvlg~~~~~ 315 (502)
++|||+||||||||||||||||||||||+|||||||||||||||||||||||||||||||||||+++++|+|+|++..+.
T Consensus 194 ~iALFaRvGGGIyTKaADVGADLVGKVEagIPEDDPRNPAvIADNVGDNVGDvAGMgADLFESY~~sivAamvL~~~~~~ 273 (735)
T 4av3_A 194 IIAMFDRVGGGVYTKAADMAADLVGKTELNLPEDDPRNPATIADNVGDNVGDVAGLGADLLESFVGAIVSSIILASYMFP 273 (735)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTTSCC-----------CCTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcceeccccccchhhhhhhcCCCCCCCCCCchhhhhcccccccccccccchHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986531
Q ss_pred CC------c--------cccceehHhHHHHHHHHHHHHHHHHhhhhhhhhccccChHHHHHHHHHHHHHHHHHHHHHHHH
Q 010729 316 GI------N--------HEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSW 381 (502)
Q Consensus 316 ~~------~--------~~~~~v~~PLli~a~GIiaSiig~~~v~~~~~~~~~~~~~~aL~~g~~vS~~l~~v~~~~~~~ 381 (502)
.. . .....++|||+++++||++|++|++++| ..+++++++++|+++++.++++++++++++++
T Consensus 274 ~~~~~~g~~~~~~~~~~~~~~~~~~Pl~i~~~gii~SiiG~~~v~---~~~~~~~~~~~l~~~~~~s~~~s~i~~~~~~~ 350 (735)
T 4av3_A 274 IYVQKIGENLVHQVPKETIQALISYPIFFALVGLGCSMLGILYVI---VKKPSDNPQRELNISLWTSALLTVVLTAFLTY 350 (735)
T ss_dssp HTEEEETTEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhheee---ecccccchhHHHhhhHHhhHHHHHHHHHHHHH
Confidence 10 0 0112477999999999999999999874 22346779999999999999999999999999
Q ss_pred hhcCccccccccCcccccchhHHHHHHHHHHHHHHHHHhhhhhcccCCCcchHHHHHH--------HHHHHHH---HhhH
Q 010729 382 IGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYRYIFKRSIR--------LSRSLIV---SLEF 450 (502)
Q Consensus 382 ~~lp~~~~~~~~g~~~~~~~~~~f~~~l~Gli~G~lIg~iTEYYTs~~y~PVr~IA~~--------~~~Gl~~---s~~~ 450 (502)
+++|+....... .....+|++|+|+++|+++|++|+++||||||++|||||+|||+ +|+||++ ||.+
T Consensus 351 ~~l~~~~~~~~~--~~~~~~~~~f~~~~iGlv~g~lI~~iTEYYTs~~~~PVr~IA~aS~TG~ATnII~GLavGm~St~~ 428 (735)
T 4av3_A 351 FYLKDLQGLDVL--GFRFGAISPWFSAIIGIFSGILIGFWAEYYTSYRYKPTQFLGKSSIEGTGMVISNGLSLGMKSVFP 428 (735)
T ss_dssp HHHTTCSSHHHH--TCTTGGGHHHHHHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHGGGCHHHHHHHHHHHHHHHTHH
T ss_pred HHhhhhhhcccc--cccccchHHHHHHHHHHHHHHHHHHheeeecCCCCchHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 998864322111 12345789999999999999999999999999999999999996 6789965 6669
Q ss_pred HHHHHHHHhhcc
Q 010729 451 PVLTLCLLYLQP 462 (502)
Q Consensus 451 Pvl~I~~ai~~~ 462 (502)
|+++|+++|+.+
T Consensus 429 pvl~I~~~I~~s 440 (735)
T 4av3_A 429 PTLTLVLGILFA 440 (735)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999988
No 3
>1ans_A Neurotoxin III; NMR {Anemonia sulcata} SCOP: g.11.1.1
Probab=56.65 E-value=3.8 Score=27.28 Aligned_cols=24 Identities=42% Similarity=0.653 Sum_probs=19.0
Q ss_pred CcccceecccccceeeecccCcccccc
Q 010729 473 RSCHQCYLWPCLGIQICHHTNFCHCSQ 499 (502)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (502)
|||-.||+=-|.=-|-||| |-||.
T Consensus 1 ~sCCPC~~~gCpWGQ~~~~---~GCSg 24 (27)
T 1ans_A 1 RSCCPCYWGGCPWGQNCYP---EGCSG 24 (27)
T ss_dssp CCSCCSTTTTCSSSCSSCS---SCSSS
T ss_pred CccccccccCCcccccccc---ccCcC
Confidence 5888899888888899998 45654
No 4
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=28.37 E-value=90 Score=25.75 Aligned_cols=40 Identities=10% Similarity=0.226 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHhHHH----HHhhhhhHHHHHHHHHHHHHHHH
Q 010729 71 VAKCADIQSAISEGATS----FLFTEYQYVGVFMIAFAILIFVF 110 (502)
Q Consensus 71 ~~~m~eIa~~I~eGA~A----FL~~eYk~i~~~~vv~~vll~~~ 110 (502)
++.|++-|..-+..|.. +..+.||...++++++.+++++.
T Consensus 42 t~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il~ii 85 (91)
T 3hd7_A 42 ADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIII 85 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444433 44556787766666666555443
No 5
>2g04_A Probable fatty-acid-COA racemase FAR; isomerase; 2.70A {Mycobacterium tuberculosis}
Probab=25.61 E-value=19 Score=36.65 Aligned_cols=18 Identities=50% Similarity=0.746 Sum_probs=15.2
Q ss_pred cccccccccccccCCCCCCCC
Q 010729 252 ADVGADLVGKVERNIPEDDPR 272 (502)
Q Consensus 252 ADVGADLVGKVEagIPEDDPR 272 (502)
||.|||-+ |||. |.||+|
T Consensus 29 AdlGAeVI-KVE~--pgd~~~ 46 (359)
T 2g04_A 29 ADLGADVV-RVRR--PGGLTM 46 (359)
T ss_dssp HHTTCEEE-EEEC--TTCCCS
T ss_pred HHcCCcEE-EEcC--CCCCcc
Confidence 79999988 9996 678775
No 6
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=21.83 E-value=5.6e+02 Score=26.41 Aligned_cols=56 Identities=14% Similarity=0.157 Sum_probs=34.3
Q ss_pred ehHhHHHHHHHHHHHHHHHHhhhhhhhhc-cccCh----HHHHHHHHHHHHHHHHHHHHHH
Q 010729 324 MLYPLLISSIGILVCLITTLFATDIFEVK-AVKEI----EPSLKKQLIISTVLMTVGIAIV 379 (502)
Q Consensus 324 v~~PLli~a~GIiaSiig~~~v~~~~~~~-~~~~~----~~aL~~g~~vS~~l~~v~~~~~ 379 (502)
..+|++...-|-+.+-..+.++|...... +.++. .|-+..|+....++.++.....
T Consensus 341 ~~~P~v~~~gGn~Gtq~~t~~ir~la~~~~~~~~~~~~~~ke~~~~~~~g~~~~~~~~~~~ 401 (473)
T 2zy9_A 341 FYVPVLLGTGGNTGNQSATLIIRALATRDLDLRDWRRVFLKEMGVGLLLGLTLSFLLVGKV 401 (473)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCcHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999889888888888887653221 12232 2445555555555555544433
No 7
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=19.57 E-value=14 Score=31.05 Aligned_cols=10 Identities=40% Similarity=0.943 Sum_probs=5.4
Q ss_pred CCCCCccccc
Q 010729 269 DDPRNPAVIA 278 (502)
Q Consensus 269 DDPRNPAVIA 278 (502)
+||-||+..|
T Consensus 39 ~~PsnPa~LA 48 (85)
T 2ca5_A 39 KNPSNPQLLA 48 (85)
T ss_dssp HCTTCHHHHH
T ss_pred cCCCCHHHHH
Confidence 4555555554
No 8
>4sgb_I Potato inhibitor, PCI-1; complex(serine proteinase-inhibitor); 2.10A {Streptomyces griseus} SCOP: g.69.1.1 PDB: 2jzm_A 1tih_A 1qh2_B
Probab=18.64 E-value=34 Score=26.06 Aligned_cols=9 Identities=33% Similarity=0.936 Sum_probs=7.3
Q ss_pred CCCCCCccc
Q 010729 268 EDDPRNPAV 276 (502)
Q Consensus 268 EDDPRNPAV 276 (502)
|.|||||-.
T Consensus 27 esdp~npk~ 35 (51)
T 4sgb_I 27 QSDPKKPKA 35 (51)
T ss_dssp CBCTTSCCC
T ss_pred ccCCCCCCc
Confidence 789999864
No 9
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A
Probab=17.91 E-value=20 Score=27.10 Aligned_cols=29 Identities=21% Similarity=0.470 Sum_probs=22.2
Q ss_pred Ccccceecccccceeeecc--------cCccccccCC
Q 010729 473 RSCHQCYLWPCLGIQICHH--------TNFCHCSQHF 501 (502)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 501 (502)
..|..|.-.||+.-..|+. .-.|+|...|
T Consensus 4 ~~c~~C~~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf 40 (63)
T 1hae_A 4 VKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGF 40 (63)
T ss_dssp EECCHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTE
T ss_pred CccCCCCCCcCCCCcEEecCCccCCCCCEEEECCCCC
Confidence 3578899999998788985 2359998754
No 10
>2ifo_A Inovirus; helical virus; NMR {Filamentous phage} SCOP: h.1.4.1
Probab=17.25 E-value=1.8e+02 Score=21.71 Aligned_cols=29 Identities=21% Similarity=0.153 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhe
Q 010729 7 SELATEILVPVCAVVGIIFSLVQWFIVSR 35 (502)
Q Consensus 7 s~~~~~~l~~~~~~~gl~~a~~~~~~v~~ 35 (502)
++.-+-...+..+++++..++..++|++|
T Consensus 16 ~~a~t~i~~IG~aVLgV~v~i~v~k~IRr 44 (46)
T 2ifo_A 16 QGAAGPIAAIGGAVLTVMVGIKVYKWVRR 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344455566789999999999999988
Done!