Query 010731
Match_columns 502
No_of_seqs 355 out of 2248
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 13:04:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010731.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010731hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vv5_A MSCS, small-conductance 100.0 1.6E-45 5.4E-50 370.3 32.4 244 156-418 36-280 (286)
2 3udc_A Small-conductance mecha 100.0 2.7E-43 9.2E-48 354.0 38.0 217 187-418 61-279 (285)
3 2e6z_A Transcription elongatio 84.4 1.2 4E-05 33.1 4.4 46 253-300 6-56 (59)
4 2do3_A Transcription elongatio 79.7 4.5 0.00015 31.0 6.1 43 252-295 15-59 (69)
5 1nz9_A Transcription antitermi 78.5 6 0.00021 28.8 6.4 26 253-279 3-30 (58)
6 3udc_A Small-conductance mecha 70.3 24 0.00083 34.2 10.4 92 157-249 27-119 (285)
7 2vv5_A MSCS, small-conductance 52.8 1.6E+02 0.0056 28.2 13.0 30 65-94 28-57 (286)
8 3p8b_B Transcription antitermi 44.1 16 0.00056 31.9 3.6 28 252-280 89-118 (152)
9 2jvv_A Transcription antitermi 40.5 20 0.0007 32.2 3.7 27 252-279 125-153 (181)
10 3mlq_E Transcription-repair co 39.1 42 0.0014 25.6 4.7 50 254-309 2-59 (71)
11 3h0l_B Aspartyl/glutamyl-tRNA( 36.7 3.4E+02 0.012 28.3 12.7 146 245-407 90-245 (478)
12 3ip4_B Aspartyl/glutamyl-tRNA( 32.7 4.5E+02 0.015 27.4 13.9 150 245-412 88-247 (483)
13 4b6m_A Tubulin-specific chaper 30.8 45 0.0016 26.4 3.7 25 253-279 4-28 (84)
14 3exz_A MAOC-like dehydratase; 27.7 87 0.003 26.9 5.6 16 248-263 85-100 (154)
15 2k4k_A GSP13, general stress p 26.4 90 0.0031 26.3 5.3 43 253-305 3-45 (130)
16 3iuw_A Activating signal coint 26.3 80 0.0027 24.9 4.4 28 251-278 34-62 (83)
17 1vq8_Q 50S ribosomal protein L 25.8 76 0.0026 25.8 4.3 34 253-287 32-76 (96)
18 1txq_A Dynactin 1; protein com 25.5 61 0.0021 26.1 3.7 27 252-280 10-36 (93)
19 2xhc_A Transcription antitermi 24.9 1.1E+02 0.0039 30.6 6.4 27 252-279 296-324 (352)
20 1iq6_A (R)-hydratase, (R)-spec 24.3 1.2E+02 0.0043 24.5 5.8 24 247-277 80-103 (134)
21 3j21_U 50S ribosomal protein L 24.0 58 0.002 27.6 3.5 25 254-279 45-71 (121)
22 2k52_A Uncharacterized protein 23.3 1.5E+02 0.005 22.5 5.5 40 255-304 3-42 (80)
23 1whl_A Cylindromatosis tumor s 22.8 86 0.0029 25.3 4.1 28 253-280 6-35 (95)
24 3cnr_A Type IV fimbriae assemb 22.6 21 0.0007 30.2 0.3 20 245-264 32-51 (117)
25 2coy_A Dynactin-1; microtubule 22.6 73 0.0025 26.6 3.8 26 253-280 32-57 (112)
26 1vq8_T 50S ribosomal protein L 20.6 68 0.0023 27.2 3.2 25 254-279 42-68 (120)
27 3j21_R 50S ribosomal protein L 20.5 1.1E+02 0.0038 24.8 4.3 34 252-286 32-76 (97)
28 2khj_A 30S ribosomal protein S 20.0 80 0.0027 25.6 3.5 45 252-306 26-70 (109)
No 1
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=100.00 E-value=1.6e-45 Score=370.31 Aligned_cols=244 Identities=18% Similarity=0.248 Sum_probs=220.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHh
Q 010731 156 TVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLA 235 (502)
Q Consensus 156 ~il~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~v~vi~~~~iL~~lG~~~~~lla~~Gi~glalgfA 235 (502)
++++++|++.+++..+.+.+..+.. .+.+...++.++++++++++++++++..+|+++++++|++|++|+++|||
T Consensus 36 ~i~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~~i~~i~~~~~l~~~gi~~~~l~a~~g~~g~aig~a 110 (286)
T 2vv5_A 36 AIIIVGLIIARMISNAVNRLMISRK-----IDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGLA 110 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-----SCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-----CChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 4566778888888776655544433 22356788999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCccCCcEEEEeecCcceEEEEEEEcceeEEEEEeCCCcEEEEeCcccccceEEEccCCCceE
Q 010731 236 GREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWR 315 (502)
Q Consensus 236 aq~~l~N~~aGi~I~~~~Pf~VGD~I~i~i~g~~~~G~Ve~I~l~~TT~irt~d~~~v~IPNs~l~~~~I~N~sr~~~~~ 315 (502)
+|++++|++||++|+++|||++||||++ ++.+|+|++|+|++ |++|++||+.++|||+.+.++.|+|||+++.++
T Consensus 111 ~q~~l~n~~sGi~i~~~~pf~vGD~I~i----~g~~G~V~~I~l~~-T~i~t~dg~~v~IPNs~l~~~~i~N~s~~~~~r 185 (286)
T 2vv5_A 111 LQGSLSNLAAGVLLVMFRPFRAGEYVDL----GGVAGTVLSVQIFS-TTMRTADGKIIVIPNGKIIAGNIINFSREPVRR 185 (286)
T ss_dssp HTHHHHHHHHHHHHHTTCSSCTTCEEES----SSCEEEEEEECSSE-EEEECTTSCEEEEEHHHHHTSCEEESSSSSEEE
T ss_pred HHHHHHHHHhhhHHHhcCCccCCCEEEE----CCEEEEEEEEEeEE-EEEEeCCCCEEEechHHHhhCceEECCCCCcEE
Confidence 9999999999999999999999999997 56999999999999 999999999999999999999999999998889
Q ss_pred EEEEEeecC-CCHHHHHHHHHHHHHHHHcCCCccccccceEEEEEeecCCCCeeEEEEEEEEecCChhhHHHHHHHHHHH
Q 010731 316 IKTYLAISH-LDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLD 394 (502)
Q Consensus 316 i~~~i~v~y-td~~~v~~i~~~l~~~l~~~~~i~~~~~~p~v~v~~~~~~~~~v~i~v~~~v~~~~~~~~~~vr~~l~~~ 394 (502)
+.++++++| +|+++++++ ++++++++|.+..++. |.|.+.+++ ++++++++++|+++. +++++|++++++
T Consensus 186 ~~~~v~v~y~~d~~~v~~~---l~~~~~~~~~vl~~p~-p~v~v~~~~--~~~i~~~v~~~~~~~---~~~~~~~~l~~~ 256 (286)
T 2vv5_A 186 NEFIIGVAYDSDIDQVKQI---LTNIIQSEDRILKDRE-MTVRLNELG--ASSINFVVRVWSNSG---DLQNVYWDVLER 256 (286)
T ss_dssp EEEEEEECTTSCHHHHHHH---HHHHHHHCTTBCTTSC-EEEEEEEEC--SSSEEEEEEEEEETT---THHHHHHHHHHH
T ss_pred EEEEEEEcCCCCHHHHHHH---HHHHHHhCcccccCCC-CEEEEEEec--CCeEEEEEEEEEccc---hHHHHHHHHHHH
Confidence 999999999 699999987 8889999999887764 799999999 789999999999984 478999999999
Q ss_pred HHHHHHHCCCccCCCceEEEEecC
Q 010731 395 LLHVISHHRARMATPIRTVQKIYS 418 (502)
Q Consensus 395 i~~~~~~~gI~~a~P~~~v~~~~~ 418 (502)
+++.|+++||++|||++++|....
T Consensus 257 i~~~~~~~gI~ip~P~~~v~~~~~ 280 (286)
T 2vv5_A 257 IKREFDAAGISFPYPQMDVNFKRV 280 (286)
T ss_dssp HHHHHHHHTCCCCCCEEEEEEECC
T ss_pred HHHHHHHCCCcCCCCceEEEeccC
Confidence 999999999999999999998753
No 2
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=100.00 E-value=2.7e-43 Score=353.96 Aligned_cols=217 Identities=17% Similarity=0.263 Sum_probs=192.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccCCcEEEEeec
Q 010731 187 RNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQ 266 (502)
Q Consensus 187 ~~~~~~~l~~i~~~~v~vi~~~~iL~~lG~~~~~lla~~Gi~glalgfAaq~~l~N~~aGi~I~~~~Pf~VGD~I~i~i~ 266 (502)
..++.++++++++++++++++++++..+|++.++++|++|++|+++|||+|++++|++||++|+++|||++||||++
T Consensus 61 ~~tl~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~l~a~~g~~g~aig~a~q~~l~n~~~Gi~i~~~~pf~vGD~I~i--- 137 (285)
T 3udc_A 61 IDTLTSLTKNAVRYIIYFLAGASILKLFNIDMTSLLAVAGIGSLAIGFGAQNLVKDMISGFFIIFEDQFSVGDYVTI--- 137 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSCCTTCEEEE---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCCEEEE---
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CcceEEEEEEEcceeEEEEEeCCCcEEEEeCcccccceEEEccCCCceEEEEEEeecC-CCHHHHHHHHHHHHHHH-HcC
Q 010731 267 GYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISH-LDVHKVNSIVADMRKVL-AKN 344 (502)
Q Consensus 267 g~~~~G~Ve~I~l~~TT~irt~d~~~v~IPNs~l~~~~I~N~sr~~~~~i~~~i~v~y-td~~~v~~i~~~l~~~l-~~~ 344 (502)
++.+|+|++|++|+ |++|++||+.++|||+.+ +.++|||++. .+..++++++| +|.++++++++++.+.+ +.+
T Consensus 138 -~~~~G~V~~I~l~~-T~i~t~d~~~v~iPN~~l--~~i~N~s~~~-~~~~~~v~v~~~~d~~~v~~~l~~i~~~~~~~~ 212 (285)
T 3udc_A 138 -NGISGTVEEIGLRV-TKIRGFSDGLHIIPNGEI--KMVTNLTKDS-MMAVVNIAFPIDEDVDKIIEGLQEICEEVKKSR 212 (285)
T ss_dssp -TTEEEEEEEECSSE-EEEEETTTEEEEEEGGGC--SCEEECSSSC-EEEEEEEEEETTSCHHHHHHHHHHHHHHHHHHC
T ss_pred -CCEEEEEEEeeeeE-EEEecCCCCEEEeccccc--ccccccCCCC-ceEEEEEeeecCCCHHHHHHHHHHHHHHHHhcc
Confidence 56999999999999 999999999999999999 4699999864 55568999999 69999988866554443 444
Q ss_pred CCccccccceEEEEEeecCCCCeeEEEEEEEEecCChhhHHHHHHHHHHHHHHHHHHCCCccCCCceEEEEecC
Q 010731 345 PQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYS 418 (502)
Q Consensus 345 ~~i~~~~~~p~v~v~~~~~~~~~v~i~v~~~v~~~~~~~~~~vr~~l~~~i~~~~~~~gI~~a~P~~~v~~~~~ 418 (502)
+...+++ |.+.+.+++ ++++++++++|+++. +++.+|+++++++++.|+++||++|||+|++|+...
T Consensus 213 ~~~~~~~--~~v~~~~~~--~s~i~~~v~~~~~~~---~~~~~~~~l~~~I~~~f~~~gI~ipfP~~~v~~~~~ 279 (285)
T 3udc_A 213 DDLIEGP--TVLGITDMQ--DSKLVIMVYAKTQPM---QKWAVERDIRYRVKKMFDQKNISFPYPQMDVNFKRV 279 (285)
T ss_dssp SSBSSCC--EEEEEEEEE--TTEEEEEEEEEESTT---CHHHHHHHHHHHHHHHHHHTTCCCCCCCCEEEEEEC
T ss_pred cccccCc--ccccccccC--CCEEEEEEEEEECcc---hHHHHHHHHHHHHHHHHHHCCCcCcCCCEEEEeCcC
Confidence 4444333 578999999 789999999999874 468999999999999999999999999999999874
No 3
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.43 E-value=1.2 Score=33.13 Aligned_cols=46 Identities=15% Similarity=0.276 Sum_probs=30.8
Q ss_pred CCccCCcEEEEeecC--cceEEEEEEEcceeEEEEEe---CCCcEEEEeCccc
Q 010731 253 QPFVINEWIQTKIQG--YEVSGTVEHVGWWSPTIIRG---DDREAVHIPNHKF 300 (502)
Q Consensus 253 ~Pf~VGD~I~i~i~g--~~~~G~Ve~I~l~~TT~irt---~d~~~v~IPNs~l 300 (502)
-.|.+||.|++ ++| .+..|+|++++--. ..+.- .-.+.+.+|++.+
T Consensus 6 ~~f~~GD~V~V-~~Gpf~g~~G~V~evd~e~-v~V~v~~fg~~tpvel~~~qv 56 (59)
T 2e6z_A 6 SGFQPGDNVEV-CEGELINLQGKILSVDGNK-ITIMPKHEDLKDMLEFPAQEL 56 (59)
T ss_dssp SSCCTTSEEEE-CSSTTTTCEEEECCCBTTE-EEEEECCSSCCSCEEEETTTE
T ss_pred ccCCCCCEEEE-eecCCCCCEEEEEEEeCCE-EEEEEEecCCCceEEEcHHHE
Confidence 37999999999 565 36899999998643 44433 1134566666554
No 4
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=79.74 E-value=4.5 Score=31.04 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=29.5
Q ss_pred cCCccCCcEEEEeecC--cceEEEEEEEcceeEEEEEeCCCcEEEE
Q 010731 252 TQPFVINEWIQTKIQG--YEVSGTVEHVGWWSPTIIRGDDREAVHI 295 (502)
Q Consensus 252 ~~Pf~VGD~I~i~i~g--~~~~G~Ve~I~l~~TT~irt~d~~~v~I 295 (502)
.+-|++||.|++ ++| .|..|.|.++.=-..|.+-+..++-+.|
T Consensus 15 rK~F~~GDHVkV-i~G~~~getGlVV~v~~d~v~v~SD~t~~Ei~V 59 (69)
T 2do3_A 15 RKYFKMGDHVKV-IAGRFEGDTGLIVRVEENFVILFSDLTMHELKV 59 (69)
T ss_dssp CSSCCTTCEEEE-SSSTTTTCEEEEEEECSSCEEEEESSSCSEEEE
T ss_pred eeeccCCCeEEE-eccEEcCceEEEEEEeCCEEEEEeCCCCCEEEE
Confidence 478999999999 776 3678999988644424444444444444
No 5
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=78.50 E-value=6 Score=28.85 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=21.5
Q ss_pred CCccCCcEEEEeecCc--ceEEEEEEEcc
Q 010731 253 QPFVINEWIQTKIQGY--EVSGTVEHVGW 279 (502)
Q Consensus 253 ~Pf~VGD~I~i~i~g~--~~~G~Ve~I~l 279 (502)
-+|++||.|++ ++|- +.+|.|++++.
T Consensus 3 ~~~~~Gd~V~V-~~Gpf~g~~g~v~~v~~ 30 (58)
T 1nz9_A 3 VAFREGDQVRV-VSGPFADFTGTVTEINP 30 (58)
T ss_dssp CSCCTTCEEEE-CSGGGTTCEEEEEEEET
T ss_pred cccCCCCEEEE-eecCCCCcEEEEEEEcC
Confidence 37899999998 6652 68999999975
No 6
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=70.29 E-value=24 Score=34.17 Aligned_cols=92 Identities=8% Similarity=-0.063 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHh
Q 010731 157 VLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVY-TAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLA 235 (502)
Q Consensus 157 il~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~-~~v~vi~~~~iL~~lG~~~~~lla~~Gi~glalgfA 235 (502)
+++++|+..++.+.+.+.+.+..............+.+..++. ++-+++.++.++..++.=-.. ++++-+++-++|+|
T Consensus 27 ~lii~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~~~~~i~~~~~~~~l~~~g~~-~~~l~a~~g~~g~a 105 (285)
T 3udc_A 27 ILIIAFIGIKFADFLIYRFYKLYSKSKIQLPQRKIDTLTSLTKNAVRYIIYFLAGASILKLFNID-MTSLLAVAGIGSLA 105 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHH
Confidence 3344455555555444433332221111222333444555544 444555555556666533233 34454555567899
Q ss_pred hhhHHHHHHHHHHH
Q 010731 236 GREIFTNFLSSVMI 249 (502)
Q Consensus 236 aq~~l~N~~aGi~I 249 (502)
..=.+++.++.++=
T Consensus 106 ig~a~q~~l~n~~~ 119 (285)
T 3udc_A 106 IGFGAQNLVKDMIS 119 (285)
T ss_dssp HHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99899999998753
No 7
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=52.82 E-value=1.6e+02 Score=28.18 Aligned_cols=30 Identities=7% Similarity=0.098 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010731 65 ILRLIPAAALVAFAAWGLVPLVRLGRTIFL 94 (502)
Q Consensus 65 ~~~~l~al~i~~~a~~~~~~l~r~i~r~~~ 94 (502)
..+++.+++++++++++.+++.+.+.+.+.
T Consensus 28 ~~~i~~~~~i~~i~~~~~~~~~~~~~~~~~ 57 (286)
T 2vv5_A 28 AVNIVAALAIIIVGLIIARMISNAVNRLMI 57 (286)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777777777777777777666655444
No 8
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=44.12 E-value=16 Score=31.90 Aligned_cols=28 Identities=11% Similarity=0.094 Sum_probs=22.3
Q ss_pred cCCccCCcEEEEeecC--cceEEEEEEEcce
Q 010731 252 TQPFVINEWIQTKIQG--YEVSGTVEHVGWW 280 (502)
Q Consensus 252 ~~Pf~VGD~I~i~i~g--~~~~G~Ve~I~l~ 280 (502)
...|++||+|++ ++| .|..|.|++++-.
T Consensus 89 ~~~~~~Gd~VrI-~~Gpf~g~~g~V~~vd~~ 118 (152)
T 3p8b_B 89 VSGLEPGDLVEV-IAGPFKGQKAKVVKIDES 118 (152)
T ss_dssp TTTCCTTCEEEE-CSSTTTTCEEEEEEEETT
T ss_pred cccCCCCCEEEE-eeecCCCCEEEEEEEeCC
Confidence 347999999998 565 3688999999753
No 9
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=40.46 E-value=20 Score=32.20 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=22.0
Q ss_pred cCCccCCcEEEEeecC--cceEEEEEEEcc
Q 010731 252 TQPFVINEWIQTKIQG--YEVSGTVEHVGW 279 (502)
Q Consensus 252 ~~Pf~VGD~I~i~i~g--~~~~G~Ve~I~l 279 (502)
.-+|.+||.|++ ++| .|.+|+|++++-
T Consensus 125 ~~~~~~Gd~V~V-~~GPf~g~~G~v~~v~~ 153 (181)
T 2jvv_A 125 KTLFEPGEMVRV-NDGPFADFNGVVEEVDY 153 (181)
T ss_dssp CCCCCTTEEEEE-CSSTTTTEEEEEEEEET
T ss_pred cccCCCCCEEEE-eccCCCCcEEEEEEEeC
Confidence 348999999999 665 278999999964
No 10
>3mlq_E Transcription-repair coupling factor; tudor, transferase-transcription complex; 2.91A {Thermus thermophilus}
Probab=39.13 E-value=42 Score=25.59 Aligned_cols=50 Identities=10% Similarity=0.208 Sum_probs=17.5
Q ss_pred CccCCcEEEEeecCcceEEEEEEEcce--------eEEEEEeCCCcEEEEeCcccccceEEEcc
Q 010731 254 PFVINEWIQTKIQGYEVSGTVEHVGWW--------SPTIIRGDDREAVHIPNHKFTVNVVRNLS 309 (502)
Q Consensus 254 Pf~VGD~I~i~i~g~~~~G~Ve~I~l~--------~TT~irt~d~~~v~IPNs~l~~~~I~N~s 309 (502)
||++||+|.- ...|+ |+++.|.-+ + -.++-.++..++||-..+. .|.-|.
T Consensus 2 ~l~~GD~VVh--~~hGi-G~~~gi~~~~v~g~~~ey-~~l~y~~~~~l~VPv~~~~--~i~ry~ 59 (71)
T 3mlq_E 2 PHMPGDYLIH--PEHGV-GQYLGLETREVLGVKRDY-LVLRYKGEGKLYLPVEQLP--LLKRHP 59 (71)
T ss_dssp ----------------C-EEEEEEEEEEETTEEEEE-EEEEETTTEEEEEESSSCC--------
T ss_pred cCCCCCEEEE--CCCee-EEEeEEEEEEeCCeeEEE-EEEEECCCCEEEEEhhhhc--ceeeec
Confidence 7999999984 22222 555544332 2 3455556778888887764 344443
No 11
>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B*
Probab=36.71 E-value=3.4e+02 Score=28.30 Aligned_cols=146 Identities=11% Similarity=0.165 Sum_probs=92.3
Q ss_pred HHHHHH-hcCCccCCcEEEEeecCcceEEEEEEEcceeEEEEEeCCCcEEEEeCcccccceEEEccCCCceEEEEEEeec
Q 010731 245 SSVMIH-ATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAIS 323 (502)
Q Consensus 245 aGi~I~-~~~Pf~VGD~I~i~i~g~~~~G~Ve~I~l~~TT~irt~d~~~v~IPNs~l~~~~I~N~sr~~~~~i~~~i~v~ 323 (502)
.|.+|. ++.|+-.|=+|.+..++ |....|++.. .++.-+.|+.++-+ +.....+.|.+---+.+.-.=+
T Consensus 90 kgYQITQ~~~Pia~~G~l~i~~~~----g~~k~I~I~r-ihlEEDagK~~h~~-----~~slvD~NRaGvPLiEIVTePd 159 (478)
T 3h0l_B 90 KGYQISQYEKPLATNGWVELNLPN----GEKKKVRIRR-LHIEEDAGKNIHEG-----DKTLVDLNRAGTPLMEIVTEPD 159 (478)
T ss_dssp TSEEEEESSSCSEEEEEEEEECTT----SCEEEEEEEE-EEEEECCCEEEEET-----TEEEEECSSTTCEEEEEEECTT
T ss_pred cccchhccccCeecCCEEEEEecC----CceEEEeeEE-EEecccccccccCC-----CceEEecCCCCCceEEEecCCC
Confidence 455554 67799999999874333 3457899988 99999999999872 3467789998876666655556
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCccc---cccceEE----EEEeecCCCCeeEEEEEEEEecCChhhHHHHHHHHHHHHH
Q 010731 324 HLDVHKVNSIVADMRKVLAKNPQVEQ---QRLHRRV----FLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLL 396 (502)
Q Consensus 324 ytd~~~v~~i~~~l~~~l~~~~~i~~---~~~~p~v----~v~~~~~~~~~v~i~v~~~v~~~~~~~~~~vr~~l~~~i~ 396 (502)
..+++++...+++++.+++...-.+. ... -+| .+...|.. .+--++-+++- +.+..++..+..++.
T Consensus 160 ~~s~eeA~a~~~~L~~ilr~lgvsd~~meeGs-lR~DvNVSvr~~g~~----~~GtRvEiKNl--nS~~~v~~AI~yEi~ 232 (478)
T 3h0l_B 160 IRTPEEARLFLEKLRNIMRYAGVSKADMEKGQ-LRCDINVSIRPKGSK----EFGTRVEIKNV--NSFRFVQKALEYEIE 232 (478)
T ss_dssp BCSHHHHHHHHHHHHHHHHHHTSCCCCGGGTS-EEEEEEEEEEETTCC----SCCCCEEEECC--CSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCcCccccccCc-eEeeeeEEeccCCCC----CCcceEEEecc--ccHHHHHHHHHHHHH
Confidence 67999999999999998876443222 111 122 22222210 12234555654 346666666666666
Q ss_pred HHHH--HCCCccC
Q 010731 397 HVIS--HHRARMA 407 (502)
Q Consensus 397 ~~~~--~~gI~~a 407 (502)
+..+ +.|-++.
T Consensus 233 RQ~~~le~Gg~V~ 245 (478)
T 3h0l_B 233 RQINVVEEGGEVV 245 (478)
T ss_dssp HHHHHHHTTCCCC
T ss_pred HHHHHHHcCCCee
Confidence 5433 3555543
No 12
>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B
Probab=32.74 E-value=4.5e+02 Score=27.43 Aligned_cols=150 Identities=12% Similarity=0.135 Sum_probs=94.8
Q ss_pred HHHHHH-hcCCccCCcEEEEeecCcceEEEEEEEcceeEEEEEeCCCcEEEEeCcccccceEEEccCCCceEEEEEEeec
Q 010731 245 SSVMIH-ATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAIS 323 (502)
Q Consensus 245 aGi~I~-~~~Pf~VGD~I~i~i~g~~~~G~Ve~I~l~~TT~irt~d~~~v~IPNs~l~~~~I~N~sr~~~~~i~~~i~v~ 323 (502)
.|.+|. ++.|+-.|=+|.+..+| .-..|++.. ..+.-+.|+.++-.+ .....+.|.+---+.+.-.=+
T Consensus 88 kgYQITQ~~~Pia~~G~l~i~~~~-----~~k~I~I~r-ihlEEDagK~~h~~~-----~slvD~NRaGvPLiEIVTePd 156 (483)
T 3ip4_B 88 KAYQISQFDQPIGENGYIDIEVDG-----ETKRIGITR-LHMEEDAGKSTHKGE-----YSLVDLNRQGTPLIEIVSEPD 156 (483)
T ss_dssp TSEEEECSSSCSEEEEEEEECSSS-----SCEEEEEEE-EEEEECCCEEEEETT-----EEEEECTTTTCEEEEEEECSC
T ss_pred cCccccccccCeecCCEEEEEecC-----ceEEEeEEE-EeecchhhhhccCCC-----ceEEecCCCCCceEEEecCCC
Confidence 455554 67799999999874332 236789988 999999999998643 467789998876666655556
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCccc---cccceEE----EEEeecCCCCeeEEEEEEEEecCChhhHHHHHHHHHHHHH
Q 010731 324 HLDVHKVNSIVADMRKVLAKNPQVEQ---QRLHRRV----FLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLL 396 (502)
Q Consensus 324 ytd~~~v~~i~~~l~~~l~~~~~i~~---~~~~p~v----~v~~~~~~~~~v~i~v~~~v~~~~~~~~~~vr~~l~~~i~ 396 (502)
..+++++...+++++.+++...-.+. ... -+| .+...|.. .+--++-+++- +.+..++..+..++.
T Consensus 157 ~~s~eeA~a~~~~L~~ilr~lgvsd~~meeGs-lR~DvNVSvr~~g~~----~~GtRvEiKNl--nS~~~v~~AI~yEi~ 229 (483)
T 3ip4_B 157 IRSPKEAYAYLEKLRSIIQYTGVSDVKMEEGS-LRCDANISLRPYGQE----KFGTKAELKNL--NSFNYVRKGLEYEEK 229 (483)
T ss_dssp BCSHHHHHHHHHHHHHHHHHHTSCCCCGGGTS-EEEEEEEEEEETTSC----CCCCEEEEECC--CSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCCcccCc-eEeeeeEeecCCCCC----CCcceEEEecc--cCHHHHHHHHHHHHH
Confidence 67999999999999998876442221 111 122 22222211 12235556655 346667777766666
Q ss_pred HHHH--HCCCccCCCceE
Q 010731 397 HVIS--HHRARMATPIRT 412 (502)
Q Consensus 397 ~~~~--~~gI~~a~P~~~ 412 (502)
+..+ +.|-.+.-+++.
T Consensus 230 RQ~~~le~Gg~v~qETR~ 247 (483)
T 3ip4_B 230 RQEEELLNGGEIGQETRR 247 (483)
T ss_dssp HHHHHHHHTCCCCEEEEE
T ss_pred HHHHHHHcCCcEecccee
Confidence 6443 455566544443
No 13
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=30.84 E-value=45 Score=26.43 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=19.2
Q ss_pred CCccCCcEEEEeecCcceEEEEEEEcc
Q 010731 253 QPFVINEWIQTKIQGYEVSGTVEHVGW 279 (502)
Q Consensus 253 ~Pf~VGD~I~i~i~g~~~~G~Ve~I~l 279 (502)
+.++|||+|++ .+++..|+|.-||-
T Consensus 4 ~~i~vG~Rv~v--~~~~~~G~VryvG~ 28 (84)
T 4b6m_A 4 ETIHVGDRCLC--RPGDRLGSVRFVGR 28 (84)
T ss_dssp -CCCTTCEEEE--TTTTEEEEEEEEEE
T ss_pred cCcccCCEEEE--cCCCeEEEEEEEec
Confidence 46899999997 44467899988884
No 14
>3exz_A MAOC-like dehydratase; Q2RSA1_rhort, NESG, RRR103A, structur genomics, PSI-2, protein structure initiative; 2.30A {Rhodospirillum rubrum}
Probab=27.73 E-value=87 Score=26.86 Aligned_cols=16 Identities=6% Similarity=0.032 Sum_probs=13.4
Q ss_pred HHHhcCCccCCcEEEE
Q 010731 248 MIHATQPFVINEWIQT 263 (502)
Q Consensus 248 ~I~~~~Pf~VGD~I~i 263 (502)
-+-|.+|..+||.+.+
T Consensus 85 ~~rF~~PV~~GD~L~~ 100 (154)
T 3exz_A 85 ELSWPNPTRPGDELHV 100 (154)
T ss_dssp EEECSSCCCTTCEEEE
T ss_pred EEEEcCCCCCCCEEEE
Confidence 3568899999999985
No 15
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=26.42 E-value=90 Score=26.33 Aligned_cols=43 Identities=14% Similarity=0.170 Sum_probs=30.4
Q ss_pred CCccCCcEEEEeecCcceEEEEEEEcceeEEEEEeCCCcEEEEeCcccccceE
Q 010731 253 QPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVV 305 (502)
Q Consensus 253 ~Pf~VGD~I~i~i~g~~~~G~Ve~I~l~~TT~irt~d~~~v~IPNs~l~~~~I 305 (502)
..+++||.+. |+|..|.=.- ..+...++..=.||.|.+....+
T Consensus 3 ~~~~vG~iv~---------G~V~~i~~~G-~FV~l~~~~~Glihisel~~~~~ 45 (130)
T 2k4k_A 3 AKFEVGSVYT---------GKVTGLQAYG-AFVALDEETQGLVHISEVTHGFV 45 (130)
T ss_dssp CCCCTTCEEE---------EEEEEEETTE-EEEEEETTEEEEEEGGGTSSSCC
T ss_pred CcCCCCCEEE---------EEEEEEeCCe-EEEEECCCcEEEEEHHHCCcccc
Confidence 4578888654 7888886655 66666777778888888865443
No 16
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=26.27 E-value=80 Score=24.94 Aligned_cols=28 Identities=4% Similarity=-0.052 Sum_probs=18.1
Q ss_pred hcCCccCCcEEEEe-ecCcceEEEEEEEc
Q 010731 251 ATQPFVINEWIQTK-IQGYEVSGTVEHVG 278 (502)
Q Consensus 251 ~~~Pf~VGD~I~i~-i~g~~~~G~Ve~I~ 278 (502)
-+|.|++||.|.+. .++|..+|+-....
T Consensus 34 nDr~~~vGD~l~l~E~~~g~yTGr~i~~~ 62 (83)
T 3iuw_A 34 NDRNFQVGDILILEEYMNGMYLDDECEAE 62 (83)
T ss_dssp CCSCCCTTCEEEEEEEETTEEEEEEEEEE
T ss_pred cccCCCCCCEEEEEEccCCCccCcEEEEE
Confidence 35779999999973 44334567644333
No 17
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Probab=25.82 E-value=76 Score=25.79 Aligned_cols=34 Identities=24% Similarity=0.071 Sum_probs=25.2
Q ss_pred CCccCCcEEEEeecCc-----------ceEEEEEEEcceeEEEEEe
Q 010731 253 QPFVINEWIQTKIQGY-----------EVSGTVEHVGWWSPTIIRG 287 (502)
Q Consensus 253 ~Pf~VGD~I~i~i~g~-----------~~~G~Ve~I~l~~TT~irt 287 (502)
+-|++||.|.+++++. |-+|+|..++=++ .-+..
T Consensus 32 ~~yk~Gd~VdIk~~~svqKGmPhk~yHGkTG~V~~v~~~A-vgV~V 76 (96)
T 1vq8_Q 32 EEFDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQGDA-YKVDI 76 (96)
T ss_dssp CCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTE-EEEEE
T ss_pred HHcCCCCEEEEEecCCccCCCCcccCCCCCeEEEeECCCE-EEEEE
Confidence 6799999999876542 3478999888777 55443
No 18
>1txq_A Dynactin 1; protein complex, structural protein/protein binding complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB: 2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P
Probab=25.49 E-value=61 Score=26.12 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=20.5
Q ss_pred cCCccCCcEEEEeecCcceEEEEEEEcce
Q 010731 252 TQPFVINEWIQTKIQGYEVSGTVEHVGWW 280 (502)
Q Consensus 252 ~~Pf~VGD~I~i~i~g~~~~G~Ve~I~l~ 280 (502)
.+.+.+||+|++ .+.+..|+|.-||-.
T Consensus 10 ~~~~~vG~rv~v--~~~~~~GtVryvG~~ 36 (93)
T 1txq_A 10 ARPLRVGSRVEV--IGKGHRGTVAYVGAT 36 (93)
T ss_dssp -CCCCTTCEEEE--TTTCCEEEEEEEECC
T ss_pred cccCCCCCEEEE--CCCCeEEEEEEeeec
Confidence 357999999997 333578999988864
No 19
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=24.93 E-value=1.1e+02 Score=30.60 Aligned_cols=27 Identities=15% Similarity=0.405 Sum_probs=21.8
Q ss_pred cCCccCCcEEEEeecC--cceEEEEEEEcc
Q 010731 252 TQPFVINEWIQTKIQG--YEVSGTVEHVGW 279 (502)
Q Consensus 252 ~~Pf~VGD~I~i~i~g--~~~~G~Ve~I~l 279 (502)
.-+|.+||.|++ ++| .+..|+|++++-
T Consensus 296 ~~~f~~Gd~VrV-~~GPF~G~~G~V~evd~ 324 (352)
T 2xhc_A 296 ELGFKVGDMVKI-ISGPFEDFAGVIKEIDP 324 (352)
T ss_dssp -CCCCTTCEEEE-CSSTTTTCEEEEEEEET
T ss_pred cccCCCCCEEEE-eccCCCCcEEEEEEEcC
Confidence 347999999999 665 268999999975
No 20
>1iq6_A (R)-hydratase, (R)-specific enoyl-COA hydratase; polyhydroxyalkanoate, aeromonas caviae, the hydratase 2 motif, lyase; 1.50A {Aeromonas punctata} SCOP: d.38.1.4
Probab=24.28 E-value=1.2e+02 Score=24.55 Aligned_cols=24 Identities=8% Similarity=0.147 Sum_probs=17.7
Q ss_pred HHHHhcCCccCCcEEEEeecCcceEEEEEEE
Q 010731 247 VMIHATQPFVINEWIQTKIQGYEVSGTVEHV 277 (502)
Q Consensus 247 i~I~~~~Pf~VGD~I~i~i~g~~~~G~Ve~I 277 (502)
.-+-|.+|..+||.+.+ +++|.++
T Consensus 80 ~~~rf~~Pv~~Gd~l~~-------~~~v~~~ 103 (134)
T 1iq6_A 80 QSLSFKLPVFVGDEVTA-------EVEVTAL 103 (134)
T ss_dssp EEEEECSCCBTTCEEEE-------EEEEEEE
T ss_pred EEEEEcCCCCCCCEEEE-------EEEEEEE
Confidence 33567899999999985 4566555
No 21
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.98 E-value=58 Score=27.60 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=19.8
Q ss_pred CccCCcEEEEeecC--cceEEEEEEEcc
Q 010731 254 PFVINEWIQTKIQG--YEVSGTVEHVGW 279 (502)
Q Consensus 254 Pf~VGD~I~i~i~g--~~~~G~Ve~I~l 279 (502)
+++.||.|++ +.| .|..|.|.++.-
T Consensus 45 ~IkkGD~V~V-i~GkdKGk~GkV~~V~~ 71 (121)
T 3j21_U 45 PVRVGDKVRI-MRGDYKGHEGKVVEVDL 71 (121)
T ss_dssp ECCSSSEEEE-CSSSCSSEEEEEEEEET
T ss_pred ccccCCEEEE-eecCCCCcEeEEEEEEe
Confidence 7899999998 665 246799988864
No 22
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=23.26 E-value=1.5e+02 Score=22.46 Aligned_cols=40 Identities=8% Similarity=0.108 Sum_probs=28.4
Q ss_pred ccCCcEEEEeecCcceEEEEEEEcceeEEEEEeCCCcEEEEeCcccccce
Q 010731 255 FVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNV 304 (502)
Q Consensus 255 f~VGD~I~i~i~g~~~~G~Ve~I~l~~TT~irt~d~~~v~IPNs~l~~~~ 304 (502)
+++||.+. |+|.++.=.- ..+...++..-.+|.|.+....
T Consensus 3 ~~~G~iv~---------G~V~~v~~~G-~fV~l~~~~~Gllh~sel~~~~ 42 (80)
T 2k52_A 3 VEPGKFYK---------GVVTRIEKYG-AFINLNEQVRGLLRPRDMISLR 42 (80)
T ss_dssp CCTTCEEE---------EEEEEEETTE-EEEEEETTEEEEECGGGCSSCC
T ss_pred CCCCCEEE---------EEEEEEeCCE-EEEEECCCCEEEEEHHHCCccc
Confidence 56777654 7888877665 6666666777888988886543
No 23
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=22.84 E-value=86 Score=25.26 Aligned_cols=28 Identities=11% Similarity=0.120 Sum_probs=20.7
Q ss_pred CCccCCcEEEEeecCc--ceEEEEEEEcce
Q 010731 253 QPFVINEWIQTKIQGY--EVSGTVEHVGWW 280 (502)
Q Consensus 253 ~Pf~VGD~I~i~i~g~--~~~G~Ve~I~l~ 280 (502)
..+.|||+|++..+++ +..|+|.-||-.
T Consensus 6 ~~~~VG~rV~V~~~~~~~~~~GtVryvG~v 35 (95)
T 1whl_A 6 SGIDVGCPVKVQLRSGEEKFPGVVRFRGPL 35 (95)
T ss_dssp CCCCSSCEEEEECSSSSCEEEEEEEEECCC
T ss_pred ccCcCCCEEEEecCCCccceeEEEEEeCcc
Confidence 5699999999832332 478999988864
No 24
>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A
Probab=22.59 E-value=21 Score=30.16 Aligned_cols=20 Identities=0% Similarity=0.239 Sum_probs=17.3
Q ss_pred HHHHHHhcCCccCCcEEEEe
Q 010731 245 SSVMIHATQPFVINEWIQTK 264 (502)
Q Consensus 245 aGi~I~~~~Pf~VGD~I~i~ 264 (502)
||++|-.++||.+||.|.+.
T Consensus 32 GGlFI~T~~~~~~G~~V~l~ 51 (117)
T 3cnr_A 32 GGIFVPTPKRYMLGDEVFLL 51 (117)
T ss_dssp CEEEEECCSCCCTTCEEEEE
T ss_pred CeEEEeeCCccCCCCEEEEE
Confidence 57888899999999998873
No 25
>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein, P150- glued, DAP-150, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=22.55 E-value=73 Score=26.60 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=20.3
Q ss_pred CCccCCcEEEEeecCcceEEEEEEEcce
Q 010731 253 QPFVINEWIQTKIQGYEVSGTVEHVGWW 280 (502)
Q Consensus 253 ~Pf~VGD~I~i~i~g~~~~G~Ve~I~l~ 280 (502)
+.+.|||+|++ .+.+..|+|.-||-.
T Consensus 32 ~~l~VG~RV~V--~~~g~~GtVRyvG~v 57 (112)
T 2coy_A 32 RPLRVGSRVEV--IGKGHRGTVAYVGAT 57 (112)
T ss_dssp CCCCTTCEEEE--TTTCCEEEEEEEECC
T ss_pred ccCCCCCEEEE--CCCCeEEEEEEeeec
Confidence 57999999997 333578999888853
No 26
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=20.65 E-value=68 Score=27.17 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=20.2
Q ss_pred CccCCcEEEEeecCc--ceEEEEEEEcc
Q 010731 254 PFVINEWIQTKIQGY--EVSGTVEHVGW 279 (502)
Q Consensus 254 Pf~VGD~I~i~i~g~--~~~G~Ve~I~l 279 (502)
+++.||.|++ +.|. |..|.|.++.-
T Consensus 42 ~IkkGD~V~V-i~G~dKGk~GkV~~V~~ 68 (120)
T 1vq8_T 42 RVNAGDTVEV-LRGDFAGEEGEVINVDL 68 (120)
T ss_dssp ECCTTCEEEE-CSSTTTTCEEEEEEEET
T ss_pred cccCCCEEEE-EecCCCCCEEEEEEEEC
Confidence 7999999999 6653 57899988863
No 27
>3j21_R 50S ribosomal protein L21E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.52 E-value=1.1e+02 Score=24.85 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=24.9
Q ss_pred cCCccCCcEEEEeecCc-----------ceEEEEEEEcceeEEEEE
Q 010731 252 TQPFVINEWIQTKIQGY-----------EVSGTVEHVGWWSPTIIR 286 (502)
Q Consensus 252 ~~Pf~VGD~I~i~i~g~-----------~~~G~Ve~I~l~~TT~ir 286 (502)
-+-|++||.|.++++|. |-+|+|..++=.. .-+.
T Consensus 32 m~~yk~Gd~VdIk~~gsvqKGmPhk~yHGkTG~V~~vt~~A-vgv~ 76 (97)
T 3j21_R 32 LQEFEVGQRVHIVIEPSYHKGMPDPRFHGRTGTVVGKRGEA-YIVE 76 (97)
T ss_dssp HCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTE-EEEE
T ss_pred HHHhcCCCEEEEEecCceEcCCCCcccCCCCeEEEeecCcE-EEEE
Confidence 46799999999865542 4578999888877 4443
No 28
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=20.03 E-value=80 Score=25.61 Aligned_cols=45 Identities=11% Similarity=-0.018 Sum_probs=33.2
Q ss_pred cCCccCCcEEEEeecCcceEEEEEEEcceeEEEEEeCCCcEEEEeCcccccceEE
Q 010731 252 TQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVR 306 (502)
Q Consensus 252 ~~Pf~VGD~I~i~i~g~~~~G~Ve~I~l~~TT~irt~d~~~v~IPNs~l~~~~I~ 306 (502)
...+++||.+. |+|.+|.=.. ..+...++..=.+|.+.+....+.
T Consensus 26 ~~~~~~G~iv~---------G~V~~v~~~G-~fV~l~~~~~Gll~~sel~~~~~~ 70 (109)
T 2khj_A 26 VALNKKGAIVT---------GKVTAVDAKG-ATVELADGVEGYLRASEASRDRVE 70 (109)
T ss_dssp TTTCCSSSEEE---------EEEEEECSSC-EEEECSTTCBCCBCTTCCCSSSSS
T ss_pred hhcCCCCCEEE---------EEEEEEECCe-EEEEECCCCEEEEEHHHcCccccc
Confidence 45688998765 7888887766 777777777777888888665543
Done!