BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010732
(502 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 619 bits (1595), Expect = e-177, Method: Compositional matrix adjust.
Identities = 287/417 (68%), Positives = 334/417 (80%)
Query: 85 LNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELK 144
+N++FVG E+APWSKT HRVM I+PRYDQYKDAWDT VV E+K
Sbjct: 10 MNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIK 69
Query: 145 VGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLC 204
V D+ E+VRFFHC+KRGVDRVF+DHP FL KVWGKT KIYGP TG DY+DNQ+RFSLLC
Sbjct: 70 VADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLC 129
Query: 205 QAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFC 264
QAALEAPRILNLN+N YF G YGEDVVFV NDWHT + YLK Y+P G+Y++AKV FC
Sbjct: 130 QAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFC 189
Query: 265 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324
IHNI+YQGRFAFED+ LNL +F+SSFDFIDGY+ PV GRKINWMKAGILE+D VLTVS
Sbjct: 190 IHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVS 249
Query: 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKP 384
P+YA+EL+SG +G ELDNI+R TGI GIVNGMDV EW+P DKYI KYDA+T ++AK
Sbjct: 250 PYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKA 309
Query: 385 LLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPM 444
L KEALQAE GLPVDR IP+I FIGRLEEQKG D++AAAIP ++E+VQI++LGTGKK
Sbjct: 310 LNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKF 369
Query: 445 EKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGT 501
EK L+ +E YP K R V KFN PLAH+I+AGAD + +PSRFEPCGLIQL MRYGT
Sbjct: 370 EKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGT 426
>pdb|3D1J|A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408s)
Length = 477
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/313 (33%), Positives = 163/313 (52%), Gaps = 26/313 (8%)
Query: 193 YQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKP 252
Y DN LRF+LL E L+ P+ V A+DWH L P YL +P
Sbjct: 103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP 153
Query: 253 KGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKA 312
AK VF +HN+AYQG F + LP + F + + G +I+++KA
Sbjct: 154 ------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKA 200
Query: 313 GILESDMVLTVSPHYAQELVSGE-DKGVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKY 369
G+ +D + VSP YA+E+ + G+E L R+ + G++NG+D + W+P TD
Sbjct: 201 GLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLL 260
Query: 370 IGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK 429
+ +Y T+ D K K LQ +GL VD +P+ + RL QKG D++ A+P ++
Sbjct: 261 LASRYTRDTLED-KAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE 319
Query: 430 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPC 489
+ Q+ +LG G +++ YP + ++ +H I+ GAD IL+PSRFEPC
Sbjct: 320 QGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPC 379
Query: 490 GLIQLHAMRYGTV 502
GL QL+ ++YGT+
Sbjct: 380 GLTQLYGLKYGTL 392
>pdb|2QZS|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsb)
pdb|2R4T|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsc)
pdb|2R4U|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsd)
pdb|3GUH|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Dgm
Length = 485
Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 106/313 (33%), Positives = 163/313 (52%), Gaps = 26/313 (8%)
Query: 193 YQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKP 252
Y DN LRF+LL E L+ P+ V A+DWH L P YL +P
Sbjct: 103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP 153
Query: 253 KGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKA 312
AK VF +HN+AYQG F + LP + F + + G +I+++KA
Sbjct: 154 ------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKA 200
Query: 313 GILESDMVLTVSPHYAQELVSGE-DKGVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKY 369
G+ +D + VSP YA+E+ + G+E L R+ + G++NG+D + W+P TD
Sbjct: 201 GLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLL 260
Query: 370 IGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK 429
+ +Y T+ D K K LQ +GL VD +P+ + RL QKG D++ A+P ++
Sbjct: 261 LASRYTRDTLED-KAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE 319
Query: 430 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPC 489
+ Q+ +LG G +++ YP + ++ +H I+ GAD IL+PSRFEPC
Sbjct: 320 QGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPC 379
Query: 490 GLIQLHAMRYGTV 502
GL QL+ ++YGT+
Sbjct: 380 GLTQLYGLKYGTL 392
>pdb|1RZU|A Chain A, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
pdb|1RZU|B Chain B, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
Length = 485
Score = 172 bits (435), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 134/421 (31%), Positives = 205/421 (48%), Gaps = 33/421 (7%)
Query: 85 LNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELK 144
+N+L V +E+ P KT R T+ P Y K A TD V +
Sbjct: 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAV-TDPVKCFE 59
Query: 145 VGDKI-EKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLL 203
D + EK +D + +D P + + G Y +TG+DY DN RF+ L
Sbjct: 60 FTDLLGEKADLLEVQHERLDLLILDAPAYYERSGGP-----YLGQTGKDYPDNWKRFAAL 114
Query: 204 CQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 263
+L A RI G + D+V A+DW ++ P Y++ P+ +
Sbjct: 115 ---SLAAARI----GAGVLPG-WRPDMVH-AHDWQAAMTPVYMRYAETPE-----IPSLL 160
Query: 264 CIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTV 323
IHNIA+QG+F F L LPA + I+ YN ++++K G+ + + TV
Sbjct: 161 TIHNIAFQGQFGANIFSKLALPAH-AFGMEGIEYYND------VSFLKGGLQTATALSTV 213
Query: 324 SPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMD 381
SP YA+E+++ E G+ L+ +I R + GIVNG+D WNP TD I Y A+ + +
Sbjct: 214 SPSYAEEILTAE-FGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKN 272
Query: 382 AKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK 441
+ L K+A+ + D P+ I RL QKG D++A A+ + +++VLG G
Sbjct: 273 -RALNKKAVAEHFRID-DDGSPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGD 330
Query: 442 KPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGT 501
+E L + + +N PL+H++ AG D I+IPSRFEPCGL QL+A+RYG
Sbjct: 331 VALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGC 390
Query: 502 V 502
+
Sbjct: 391 I 391
>pdb|3COP|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Acceptor Analogue Heppso
pdb|3CX4|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Oligosaccharides
Length = 485
Score = 171 bits (432), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/313 (33%), Positives = 162/313 (51%), Gaps = 26/313 (8%)
Query: 193 YQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKP 252
Y DN LRF+LL E L+ P+ V A+DWH L P YL +P
Sbjct: 103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP 153
Query: 253 KGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKA 312
AK VF +HN+AYQG F + LP + F + + G +I+++KA
Sbjct: 154 ------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKA 200
Query: 313 GILESDMVLTVSPHYAQELVSGE-DKGVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKY 369
G+ +D + VSP YA+E+ + G+E L R+ + G++NG+D + W+P TD
Sbjct: 201 GLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLL 260
Query: 370 IGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK 429
+ +Y T+ D K K LQ +GL VD +P+ + RL QKG D++ A+P ++
Sbjct: 261 LASRYTRDTLED-KAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE 319
Query: 430 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPC 489
+ Q+ +LG G +++ YP + ++ +H I+ GAD IL+PSRF PC
Sbjct: 320 QGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFAPC 379
Query: 490 GLIQLHAMRYGTV 502
GL QL+ ++YGT+
Sbjct: 380 GLTQLYGLKYGTL 392
>pdb|1RZV|A Chain A, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
pdb|1RZV|B Chain B, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
Length = 485
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 134/420 (31%), Positives = 198/420 (47%), Gaps = 33/420 (7%)
Query: 86 NILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELKV 145
N+L V +E+ P KT R T+ P Y K A TD V +
Sbjct: 2 NVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAV-TDPVKCFEF 60
Query: 146 GDKI-EKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLC 204
D + EK +D + +D P + + G Y +TG+DY DN RF+ L
Sbjct: 61 TDLLGEKADLLEVQHERLDLLILDAPAYYERSGGP-----YLGQTGKDYPDNWKRFAAL- 114
Query: 205 QAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFC 264
+L A RI G + D V A+DW + P Y + P+ +
Sbjct: 115 --SLAAARI----GAGVLPG-WRPDXVH-AHDWQAAXTPVYXRYAETPE-----IPSLLT 161
Query: 265 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324
IHNIA+QG+F F L LPA + I+ YN ++++K G+ + + TVS
Sbjct: 162 IHNIAFQGQFGANIFSKLALPAH-AFGXEGIEYYND------VSFLKGGLQTATALSTVS 214
Query: 325 PHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDA 382
P YA+E+++ E G L+ +I R + GIVNG+D WNP TD I Y A+ + +
Sbjct: 215 PSYAEEILTAE-FGXGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKN- 272
Query: 383 KPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKK 442
+ L K+A+ + D P+ I RL QKG D+ A A+ + +++VLG G
Sbjct: 273 RALNKKAVAEHFRID-DDGSPLFCVISRLTWQKGIDLXAEAVDEIVSLGGRLVVLGAGDV 331
Query: 443 PMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTV 502
+E L + + +N PL+H+ AG D I+IPSRFEPCGL QL+A+RYG +
Sbjct: 332 ALEGALLAAASRHHGRVGVAIGYNEPLSHLXQAGCDAIIIPSRFEPCGLTQLYALRYGCI 391
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 105/275 (38%), Gaps = 54/275 (19%)
Query: 235 NDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIH--NIAYQGRFAFEDFGLLNLPAQFKSSF 292
+DWHT +K +K VF IH N + F F + GL L
Sbjct: 129 HDWHTVFAGALIKKYFK-------IPAVFTIHRLNKSKLPAFYFHEAGLSELAPYPDIDP 181
Query: 293 DFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKG 352
+ GY +D+V TVS Y D+ N K I
Sbjct: 182 EHTGGYI-----------------ADIVTTVSRGYLI------DEWGFFRNFEGK--ITY 216
Query: 353 IVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLE 412
+ NG+D WN S + ++ K++L ++ G+ D + + FIGR +
Sbjct: 217 VFNGIDCSFWNE------------SYLTGSRDERKKSLLSKFGM--DEGVTFM-FIGRFD 261
Query: 413 E-QKGSDILAAAIPHFIK----ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNI 467
QKG D+L AI + ++ I++G G +E LE + +
Sbjct: 262 RGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSR 321
Query: 468 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTV 502
+ DF++IPS FEP GL+ L AM G +
Sbjct: 322 EFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAI 356
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 105/275 (38%), Gaps = 54/275 (19%)
Query: 235 NDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIH--NIAYQGRFAFEDFGLLNLPAQFKSSF 292
+DWHT +K +K VF IH N + F F + GL L
Sbjct: 130 HDWHTVFAGALIKKYFK-------IPAVFTIHRLNKSKLPAFYFHEAGLSELAPYPDIDP 182
Query: 293 DFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKG 352
+ GY +D+V TVS Y D+ N K I
Sbjct: 183 EHTGGYI-----------------ADIVTTVSRGYLI------DEWGFFRNFEGK--ITY 217
Query: 353 IVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLE 412
+ NG+D WN S + ++ K++L ++ G+ D + + FIGR +
Sbjct: 218 VFNGIDCSFWNE------------SYLTGSRDERKKSLLSKFGM--DEGVTFM-FIGRFD 262
Query: 413 E-QKGSDILAAAIPHFIK----ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNI 467
QKG D+L AI + ++ I++G G +E LE + +
Sbjct: 263 RGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSR 322
Query: 468 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTV 502
+ DF++IPS FEP GL+ L AM G +
Sbjct: 323 EFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAI 357
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 105/275 (38%), Gaps = 54/275 (19%)
Query: 235 NDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIH--NIAYQGRFAFEDFGLLNLPAQFKSSF 292
+DWHT +K +K VF IH N + F F + GL L
Sbjct: 129 HDWHTVFAGALIKKYFK-------IPAVFTIHRLNKSKLPAFYFHEAGLSELAPYPDIDP 181
Query: 293 DFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKG 352
+ GY +D+V TVS Y D+ N K I
Sbjct: 182 EHTGGYI-----------------ADIVTTVSRGYLI------DEWGFFRNFEGK--ITY 216
Query: 353 IVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLE 412
+ NG+D WN S + ++ K++L ++ G+ D + + FIGR +
Sbjct: 217 VFNGIDCSFWNE------------SYLTGSRDERKKSLLSKFGM--DEGVTFM-FIGRFD 261
Query: 413 E-QKGSDILAAAIPHFIK----ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNI 467
QKG D+L AI + ++ I++G G +E LE + +
Sbjct: 262 RGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSR 321
Query: 468 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTV 502
+ DF++IPS FEP GL+ L AM G +
Sbjct: 322 EFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAI 356
>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From
Pyrococcus Abyssi
Length = 200
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 20/153 (13%)
Query: 355 NGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEE- 413
NG+D WN S + ++ K++L ++ G+ D + + FIGR +
Sbjct: 4 NGIDCSFWNE------------SYLTGSRDERKKSLLSKFGM--DEGVTFM-FIGRFDRG 48
Query: 414 QKGSDILAAAIPHFIK----ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPL 469
QKG D+L AI + ++ I++G G +E LE + +
Sbjct: 49 QKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREF 108
Query: 470 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTV 502
+ DF++IPS FEP GL+ L AM G +
Sbjct: 109 VRELYGSVDFVIIPSYFEPFGLVALEAMCLGAI 141
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 6/119 (5%)
Query: 375 DASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFI--KENV 432
D A P K A + ++G PVI RL +KG D L A+P I + +
Sbjct: 173 DVKRFTPATPEDKSATRKKLGF--TDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDA 230
Query: 433 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGL 491
Q++++G+G+ E L +L + + + + +A AD +P+R GL
Sbjct: 231 QLLIVGSGR--YESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGL 287
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 6/119 (5%)
Query: 375 DASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFI--KENV 432
D A P K A + ++G PVI RL +KG D L A+P I + +
Sbjct: 173 DVKRFTPATPEDKSATRKKLGF--TDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDA 230
Query: 433 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGL 491
Q++++G+G+ E L +L + + + + +A AD +P+R GL
Sbjct: 231 QLLIVGSGR--YESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGL 287
>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure.
pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure
Length = 438
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 49/171 (28%)
Query: 350 IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIG 409
I + G DV+ ++P D+ E + E+G+P+ + V+ F+G
Sbjct: 210 ISVVSPGADVELYSPGNDR-----------------ATERSRRELGIPL--HTKVVAFVG 250
Query: 410 RLEEQKGSDILAAAIPHFI----KENVQIIVLGTGKKP---------------MEKQLEQ 450
RL+ KG +L A+ N+++I+ G P +EK++
Sbjct: 251 RLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRF 310
Query: 451 LEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGT 501
L+ P + V + AD + +PS E GL+ + A GT
Sbjct: 311 LDPRPPSELVAVYR-----------AADIVAVPSFNESFGLVAMEAQASGT 350
>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P.
pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P
Length = 426
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 49/171 (28%)
Query: 350 IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIG 409
I + G DV+ ++P D+ E + E+G+P+ + V+ F+G
Sbjct: 190 ISVVSPGADVELYSPGNDR-----------------ATERSRRELGIPL--HTKVVAFVG 230
Query: 410 RLEEQKGSDILAAAIPHFI----KENVQIIVLGTGKKP---------------MEKQLEQ 450
RL+ KG +L A+ N+++I+ G P +EK++
Sbjct: 231 RLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRF 290
Query: 451 LEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGT 501
L+ P + V + AD + +PS E GL+ + A GT
Sbjct: 291 LDPRPPSELVAVYR-----------AADIVAVPSFNESFGLVAMEAQASGT 330
>pdb|2F2L|X Chain X, Crystal Structure Of Tracheal Cytotoxin (Tct) Bound To The
Ectodomain Complex Of Peptidoglycan Recognition Proteins
Lca (Pgrp-Lca) And Lcx (Pgrp-Lcx)
Length = 167
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 404 VIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGT--GKKPMEKQLEQLEILYPEKAR 460
++G GR+ E +G D + A + + ++ I +GT +KP E+QLE ++L E R
Sbjct: 69 LVGGDGRVYEGRGWDYVGAHTKGYNRGSIGISFIGTFTTRKPNERQLEACQLLLQEGVR 127
>pdb|1OKB|A Chain A, Crystal Structure Of Uracil-Dna Glycosylase From Atlantic
Cod (Gadus Morhua)
pdb|1OKB|B Chain B, Crystal Structure Of Uracil-Dna Glycosylase From Atlantic
Cod (Gadus Morhua)
Length = 223
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 295 IDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVE--LDNIIR 346
IDG+ P G W K G+L + VLTV H A S +D+G E D +I+
Sbjct: 100 IDGFKHPGHGDLSGWAKQGVLLLNAVLTVRAHQAN---SHKDRGWETFTDAVIK 150
>pdb|1EUG|A Chain A, Crystal Structure Of Escherichia Coli Uracil Dna
Glycosylase And Its Complexes With Uracil And Glycerol:
Structure And Glycosylase Mechanism Revisited
Length = 229
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 281 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 335
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 89 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 145
Query: 336 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 368
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 146 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 177
>pdb|2EUG|A Chain A, Crystal Structure Of Escherichia Coli Uracil Dna
Glycosylase And Its Complexes With Uracil And Glycerol:
Structure And Glycosylase Mechanism Revisited
pdb|3EUG|A Chain A, Crystal Structure Of Escherichia Coli Uracil Dna
Glycosylase And Its Complexes With Uracil And Glycerol:
Structure And Glycosylase Mechanism Revisited
Length = 229
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 281 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 335
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 89 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 145
Query: 336 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 368
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 146 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 177
>pdb|1FLZ|A Chain A, Uracil Dna Glycosylase With Uaap
Length = 228
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 281 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 335
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 88 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 144
Query: 336 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 368
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 145 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 176
>pdb|4EUG|A Chain A, Crystallographic And Enzymatic Studies Of An Active Site
Variant H187q Of Escherichia Coli Uracil Dna
Glycosylase: Crystal Structures Of Mutant H187q And Its
Uracil Complex
pdb|5EUG|A Chain A, Crystallographic And Enzymatic Studies Of An Active Site
Variant H187q Of Escherichia Coli Uracil Dna
Glycosylase: Crystal Structures Of Mutant H187q And Its
Uracil Complex
Length = 229
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 281 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 335
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 89 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 145
Query: 336 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 368
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 146 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 177
>pdb|1UUG|A Chain A, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex
With Wild-Type Udg And Wild-Type Ugi
pdb|1UUG|C Chain C, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex
With Wild-Type Udg And Wild-Type Ugi
pdb|1LQG|A Chain A, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1LQG|B Chain B, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1LQJ|A Chain A, Escherichia Coli Uracil-Dna Glycosylase
pdb|1LQJ|B Chain B, Escherichia Coli Uracil-Dna Glycosylase
pdb|1LQJ|C Chain C, Escherichia Coli Uracil-Dna Glycosylase
pdb|1LQJ|D Chain D, Escherichia Coli Uracil-Dna Glycosylase
pdb|1LQM|A Chain A, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1LQM|C Chain C, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1LQM|E Chain E, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1LQM|G Chain G, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
Length = 229
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 281 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 335
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 89 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 145
Query: 336 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 368
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 146 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 177
>pdb|1EUI|A Chain A, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1EUI|B Chain B, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
Length = 228
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 281 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 335
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 88 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 144
Query: 336 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 368
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 145 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 176
>pdb|3UF7|A Chain A, Co-Crystal Structure Of Escherichia Coli Uracil-Dna
Glycosylase And A C-Terminal Fragement Of The
Single-Stranded Dna-Binding Protein
Length = 237
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 281 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 335
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 89 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 145
Query: 336 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 368
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 146 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 177
>pdb|2UUG|A Chain A, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex
With H187d Mutant Udg And Wild-Type Ugi
pdb|2UUG|B Chain B, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex
With H187d Mutant Udg And Wild-Type Ugi
Length = 229
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 281 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 335
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 89 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 145
Query: 336 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 368
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 146 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 177
>pdb|3TKB|A Chain A, Crystal Structure Of Human Uracil-Dna Glycosylase
D183gK302R MUTANT
Length = 223
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 295 IDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVE 340
I+G+ P G W K G+L + VLTV H A S +++G E
Sbjct: 100 IEGFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQAN---SHKERGWE 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,529,296
Number of Sequences: 62578
Number of extensions: 614164
Number of successful extensions: 1323
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1282
Number of HSP's gapped (non-prelim): 29
length of query: 502
length of database: 14,973,337
effective HSP length: 103
effective length of query: 399
effective length of database: 8,527,803
effective search space: 3402593397
effective search space used: 3402593397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)