Query 010733
Match_columns 502
No_of_seqs 442 out of 1970
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 13:06:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010733.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010733hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 2.1E-39 7E-44 321.9 32.0 371 4-391 26-412 (451)
2 4gc0_A D-xylose-proton symport 100.0 4.4E-38 1.5E-42 315.8 30.8 411 8-448 14-471 (491)
3 3o7q_A L-fucose-proton symport 100.0 2.8E-37 9.5E-42 305.4 36.0 358 3-392 23-412 (438)
4 2gfp_A EMRD, multidrug resista 100.0 1.6E-35 5.5E-40 286.5 17.1 346 8-387 2-352 (375)
5 4aps_A DI-OR tripeptide H+ sym 100.0 1.4E-33 4.7E-38 283.1 29.7 371 5-387 12-448 (491)
6 2cfq_A Lactose permease; trans 100.0 5.9E-30 2E-34 250.7 20.5 356 7-388 8-376 (417)
7 2xut_A Proton/peptide symporte 100.0 1.6E-28 5.4E-33 248.3 26.1 368 8-386 14-466 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.6 3.2E-14 1.1E-18 140.4 16.6 176 6-186 252-434 (451)
9 2cfq_A Lactose permease; trans 99.5 3.5E-13 1.2E-17 131.5 13.2 143 40-187 258-401 (417)
10 3o7q_A L-fucose-proton symport 99.4 3.1E-12 1.1E-16 125.6 17.1 165 8-180 260-427 (438)
11 4aps_A DI-OR tripeptide H+ sym 99.4 3.6E-12 1.2E-16 127.2 13.7 173 10-188 287-474 (491)
12 4gc0_A D-xylose-proton symport 99.3 7.6E-11 2.6E-15 117.6 17.7 181 10-191 281-468 (491)
13 2gfp_A EMRD, multidrug resista 99.2 1E-10 3.5E-15 112.2 11.9 132 243-387 19-150 (375)
14 2xut_A Proton/peptide symporte 99.1 4.2E-10 1.4E-14 113.1 12.2 146 230-387 18-174 (524)
15 2g9p_A Antimicrobial peptide l 53.8 4.8 0.00016 19.6 0.9 14 60-73 2-15 (26)
16 3b9w_A Ammonium transporter fa 21.5 5E+02 0.017 24.2 14.1 13 372-384 302-314 (407)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=2.1e-39 Score=321.87 Aligned_cols=371 Identities=14% Similarity=0.100 Sum_probs=289.0
Q ss_pred chHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHH
Q 010733 4 ETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAA 83 (502)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~ 83 (502)
+|+.+..++++.+...++...+.+.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||++++++.++.++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 104 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHH
Confidence 456778888889999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh----hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccC
Q 010733 84 ATFLVAF----SSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFM 159 (502)
Q Consensus 84 ~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~ 159 (502)
+.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.+++|.+++++.+.
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--- 181 (451)
T 1pw4_A 105 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW--- 181 (451)
T ss_dssp HHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH---
T ss_pred HHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred CCcc-hhHHHHHHHHHHHHHHHHHHh-hccCCcccccCCCccCCCCCCcc---hhhhHHHHH--HhhhhhhhhHHHHHHH
Q 010733 160 GIPG-WRLAFHLVGLISVIVGVLVHV-YANDPRCLAKDGTKIDHKPRRPF---WADIKDLIT--DAKMVIKIPTFQIIVA 232 (502)
Q Consensus 160 ~~~~-w~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~ 232 (502)
.+ ||+.|++.+++.++..++.++ .+|+|+....+++++.++..+.. .++.+...+ ..+..++++.++...+
T Consensus 182 --~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (451)
T 1pw4_A 182 --FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAI 259 (451)
T ss_dssp --TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHH
T ss_pred --hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHH
Confidence 78 999999999988877766655 45444432221111111000000 000000001 1356677788777666
Q ss_pred HHHhhhh-hhhHHHhHHHHHHH-hCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhh--hhcCCCchhHHHHHHHHHHHHH
Q 010733 233 QGVFGSF-SGSAFAFAAMWLEL-IGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDIL--AQRLPDSGRVILSQISAASVIP 308 (502)
Q Consensus 233 ~~~~~~~-~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~~~~~~~~~ 308 (502)
..++... .+....+.|.|+++ +|+++.+++++.+...++.+++.++.+++.||+ ++|+ .... ...+...
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~-----~~~~--~~~~~~~ 332 (451)
T 1pw4_A 260 ANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG-----ATGV--FFMTLVT 332 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH-----HHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-----hHHH--HHHHHHH
Confidence 5555554 44666789999986 899999999999999999999999999999998 7773 1111 1111111
Q ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhh-hhchhHHHHHHHHHH
Q 010733 309 TAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESI-PSSFAPAVVGILAQH 387 (502)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-~~~i~~~~~g~l~~~ 387 (502)
........... ...+......++.|++.+...+ ....+..|..|++.|++++|+.+.+.++ ++.++|.+.|.+.+.
T Consensus 333 -~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~ 409 (451)
T 1pw4_A 333 -IATIVYWMNPA-GNPTVDMICMIVIGFLIYGPVM-LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF 409 (451)
T ss_dssp -HHHHHTTSCCT-TCHHHHHHHHHHHHHHHTHHHH-HHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred -HHHHHHHHhcc-cCHHHHHHHHHHHHHHHhchHH-HHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11222222221 2333445566677777776666 5678999999999999999999999999 999999999999987
Q ss_pred HhcC
Q 010733 388 VYGY 391 (502)
Q Consensus 388 ~~~~ 391 (502)
. ++
T Consensus 410 ~-g~ 412 (451)
T 1pw4_A 410 F-GW 412 (451)
T ss_dssp S-CS
T ss_pred c-Cc
Confidence 3 44
No 2
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=4.4e-38 Score=315.84 Aligned_cols=411 Identities=13% Similarity=0.148 Sum_probs=288.6
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHhhhccCC--------CccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHH
Q 010733 8 LVLVNFAAIMERADESMLPGVYKEVGAALHTD--------PTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAF 79 (502)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s--------~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~ 79 (502)
..+.+++.++.++|..+++..+|.+.++++.+ .++.|++.+++.+|..++++++|+++||+|||++++++.+
T Consensus 14 ~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~ 93 (491)
T 4gc0_A 14 TLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAV 93 (491)
T ss_dssp HHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 34456777889999999999999999888532 3457899999999999999999999999999999999999
Q ss_pred HHHHHHHHHH------------------hhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhh
Q 010733 80 LWAAATFLVA------------------FSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYL 141 (502)
Q Consensus 80 l~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 141 (502)
++.+++++++ +++|+++++++|+++|++.|+..+....+++|+.|+++|++..++.+.+..+
T Consensus 94 l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~ 173 (491)
T 4gc0_A 94 LFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIF 173 (491)
T ss_dssp HHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhh
Confidence 9999999999 4789999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhhcc---CCCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcc----------h
Q 010733 142 GSVLGGFCSVLIASTSF---MGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPF----------W 208 (502)
Q Consensus 142 G~~~g~~l~~~l~~~~~---~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~ 208 (502)
|.++++.++..+..... .....||+.+.+..+..++..+..++.||+|++...+++.++..+...+ .
T Consensus 174 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~ 253 (491)
T 4gc0_A 174 GQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAV 253 (491)
T ss_dssp HHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHH
Confidence 99999999887765321 1235799999998888888888888899999887665544332110000 0
Q ss_pred hhhHHHHH------HhhhhhhhhHHHHHHH-HHHhhhh-hhhHHHhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhH
Q 010733 209 ADIKDLIT------DAKMVIKIPTFQIIVA-QGVFGSF-SGSAFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGG 280 (502)
Q Consensus 209 ~~~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g 280 (502)
.+.++... .....++.+....... ..+.... .+....|.|.+.+..+.+...........++..+++.++++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (491)
T 4gc0_A 254 QEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAI 333 (491)
T ss_dssp HHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHH
Confidence 00000000 0111222223332222 2222222 23445577777788888888888888888999999999999
Q ss_pred hHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCch
Q 010733 281 KMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRT 360 (502)
Q Consensus 281 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~ 360 (502)
++.||+|||+ .... ......+.+..+..................++..+++. ...+..+.+.+|.+|++.|+
T Consensus 334 ~l~dr~Grr~-----~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~E~fPt~~R~ 405 (491)
T 4gc0_A 334 MTVDKFGRKP-----LQII-GALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAM--SWGPVCWVLLSEIFPNAIRG 405 (491)
T ss_dssp HHHHHHCSHH-----HHHH-HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT--TTTHHHHHHHHHSSCTTTHH
T ss_pred HHHHhhcCcc-----hhcc-chHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh--HHHHHHHHHHHHhCCHhHHH
Confidence 9999999995 2222 11122222222222222222222222222222333333 33335788999999999999
Q ss_pred hhHhHHHhhhhhhhchhHHHHHHHHHHHhcCCCCCCCCCCcchhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010733 361 SIYALDQSFESIPSSFAPAVVGILAQHVYGYKPIPQDASNSVEIETDRENAASLAKAIYAAMSIPMAICCIIYSFLYCSY 440 (502)
Q Consensus 361 ~~~g~~~~~~~~~~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (502)
+++|+.++++++++++++.+.+.+.+...... .......+.++++++.+..++.++..
T Consensus 406 ~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~----------------------~~~~~~~~~i~~~~~~~~~i~~~~~~ 463 (491)
T 4gc0_A 406 KALAIAVAAQWLANYFVSWTFPMMDKNSWLVA----------------------HFHNGFSYWIYGCMGVLAALFMWKFV 463 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH----------------------HHTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------hhhhhHHHHHHHHHHHHHHHHHHhee
Confidence 99999999999999999998887765421100 00001233445556666677777889
Q ss_pred cCcccccc
Q 010733 441 PNDRGQAT 448 (502)
Q Consensus 441 ~~~~~~~~ 448 (502)
||+|+++-
T Consensus 464 PETkg~tL 471 (491)
T 4gc0_A 464 PETKGKTL 471 (491)
T ss_dssp CCCTTCCH
T ss_pred cCCCCCCH
Confidence 99988763
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=2.8e-37 Score=305.36 Aligned_cols=358 Identities=13% Similarity=0.091 Sum_probs=280.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHH
Q 010733 3 SETLTLVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWA 82 (502)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~ 82 (502)
+++..+..+++..+..+++....++.+|.+.+++|.+..+.|++.+.+.+++.++.+++|+++||+|||++++++.++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~ 102 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence 34667778888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH---HhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHH-hhcc
Q 010733 83 AATFLV---AFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIA-STSF 158 (502)
Q Consensus 83 ~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~-~~~~ 158 (502)
++.+++ +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.++++.+++.+. +.
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-- 180 (438)
T 3o7q_A 103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN-- 180 (438)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS--
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 999999 889999999999999999999999999999999999999999999999999999999999999998 44
Q ss_pred CCCcc-------------------------hhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHH
Q 010733 159 MGIPG-------------------------WRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKD 213 (502)
Q Consensus 159 ~~~~~-------------------------w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (502)
.+ ||+.|++.+++.++..++.++.. .|+..++++++ + ++ ++
T Consensus 181 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~-~--~~-------~~ 246 (438)
T 3o7q_A 181 ---VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTK-FPALQSDNHSD-A--KQ-------GS 246 (438)
T ss_dssp ---SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCTTTCCCC-S--ST-------TS
T ss_pred ---cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHc-CCccccccccc-c--cc-------cc
Confidence 33 99999988887776666554432 12111111010 0 01 11
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHhhhh-hhhHHHhHHHH-HHH-hCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcC
Q 010733 214 LITDAKMVIKIPTFQIIVAQGVFGSF-SGSAFAFAAMW-LEL-IGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRL 290 (502)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 290 (502)
.....++++++|.++...+..++... ......+.|.| +++ +|+++.+++...+...++.++++++.+++.||+++|+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~ 326 (438)
T 3o7q_A 247 FSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK 326 (438)
T ss_dssp HHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 22345667788888877666655555 34556789999 886 5999999999999999999999999999999999984
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhh
Q 010733 291 PDSGRVILSQISAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFE 370 (502)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 370 (502)
...... .+... ..+ .... .+..+. ...+++.|++.+...+ ...++..|.+|++ ++++.++.. .+
T Consensus 327 -----~~~~~~--~~~~~-~~~-~~~~--~~~~~~--~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~-~~ 390 (438)
T 3o7q_A 327 -----VLAAYA--LIAMA-LCL-ISAF--AGGHVG--LIALTLCSAFMSIQYP-TIFSLGIKNLGQD-TKYGSSFIV-MT 390 (438)
T ss_dssp -----HHHHHH--HHHHH-HHH-HHHH--CCHHHH--HHHHHHHHHHHTTHHH-HHHHHHHSSCGGG-HHHHHHHHH-HT
T ss_pred -----HHHHHH--HHHHH-HHH-HHHH--cCCcHH--HHHHHHHHHHHHHHHH-HHHHHHHhhcccc-ccchhhHHH-HH
Confidence 222111 11111 111 1111 122222 2344667777777776 7788888999866 888888877 67
Q ss_pred hhhhchhHHHHHHHHHHHhcCC
Q 010733 371 SIPSSFAPAVVGILAQHVYGYK 392 (502)
Q Consensus 371 ~~~~~i~~~~~g~l~~~~~~~~ 392 (502)
.+++.++|.+.|.+.|..+++.
T Consensus 391 ~~g~~~~~~~~g~l~~~~g~~~ 412 (438)
T 3o7q_A 391 IIGGGIVTPVMGFVSDAAGNIP 412 (438)
T ss_dssp THHHHHHHHHHHHHHHHHTSSG
T ss_pred HHHHHHHHHHHHHHHHHhcchH
Confidence 8999999999999999964354
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=1.6e-35 Score=286.46 Aligned_cols=346 Identities=14% Similarity=0.133 Sum_probs=275.0
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHH
Q 010733 8 LVLVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFL 87 (502)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~ 87 (502)
+..+++..++..++.....+.+|.+.+++|.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 2 LLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 35567778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcchhHH
Q 010733 88 VAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLA 167 (502)
Q Consensus 88 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~ 167 (502)
.+++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++++.+. .+||+.
T Consensus 82 ~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~~~~~~ 156 (375)
T 2gfp_A 82 AVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM-----WNWRAC 156 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH-----HHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-----ccHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999887 799999
Q ss_pred HHHHHHHHHHHHHHHHh-hccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhh-hhhHHH
Q 010733 168 FHLVGLISVIVGVLVHV-YANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSF-SGSAFA 245 (502)
Q Consensus 168 f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 245 (502)
|++.+++.++..+..++ .||+++.++++ ++.+ ++.++.+++|.++...+..+.... ......
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (375)
T 2gfp_A 157 YLFLLVLCAGVTFSMARWMPETRPVDAPR---------TRLL-------TSYKTLFGNSGFNCYLLMLIGGLAGIAAFEA 220 (375)
T ss_dssp HHHHHHHHHHHHCCCCCSSCCCSTTTCCC---------CCTT-------TCSTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCcccCCCCccc---------ccHH-------HHHHHHhcCcchHHHHHHHHHHHHHHHHHHH
Confidence 99998888777764444 44433321111 0011 112344556666665555444444 345556
Q ss_pred hHHHHHHH-hCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHH-HHHHHHHhhcCC-CCc
Q 010733 246 FAAMWLEL-IGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVI-PTAAVLLLVLPD-DPS 322 (502)
Q Consensus 246 ~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~ 322 (502)
+.|.++++ +|.++.+++.+.....++.+++.++.+++.||.+++. ...... ............ ...
T Consensus 221 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 289 (375)
T 2gfp_A 221 CSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM-----------WQSVICCLLAGLLMWIPDWFGVM 289 (375)
T ss_dssp HCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH-----------HHHHHHHHHTSSSSSHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhhhccc
Confidence 78888875 8999999999999999999999999999999988741 111111 111111000000 012
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHH
Q 010733 323 TAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~ 387 (502)
+.+......++.|++.+...+ ...++..|..| ++|+++.|+.+...+++..++|.+.|.+.+.
T Consensus 290 ~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 352 (375)
T 2gfp_A 290 NVWTLLVPAALFFFGAGMLFP-LATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQT 352 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTSS-TTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhH-HHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333344566677888888777 78899999998 8899999999999999999999999999876
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=1.4e-33 Score=283.09 Aligned_cols=371 Identities=12% Similarity=0.059 Sum_probs=258.6
Q ss_pred hHHHHHHHHHHHHHHHhhccch-hhHHHHhhh-----ccCCCccchHHHHHHHHHHHHhhhhhhHhhhc-cCchHHHHHH
Q 010733 5 TLTLVLVNFAAIMERADESMLP-GVYKEVGAA-----LHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAH-HNRAHVIALG 77 (502)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~-----~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~G~r~~~~~~ 77 (502)
++.++.+++..+...+...... ...+++.++ +|.+..+.|++.+.+.++..++++++|+++|| +|||+++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~ 91 (491)
T 4aps_A 12 PLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWG 91 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 4456666666666666655544 344455555 99999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCccc--chhHHHHHHHHHhhhHhHHHHHHHHHHh
Q 010733 78 AFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETN--RGMAFGWLQLTGYLGSVLGGFCSVLIAS 155 (502)
Q Consensus 78 ~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~l~~~l~~ 155 (502)
.++.+++.+++++++|++.++++|+++|++.+...+...+++.|++|+++ |++++++.+.+.++|..++|.+++.+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 171 (491)
T 4aps_A 92 GVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE 171 (491)
T ss_dssp HHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988 7778888999999999999999999999
Q ss_pred hccCCCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHH------------------
Q 010733 156 TSFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITD------------------ 217 (502)
Q Consensus 156 ~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 217 (502)
. .+||+.|++.++..++..++.++..++...+..+.+ +++ ...++.++..+.
T Consensus 172 ~-----~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~ 241 (491)
T 4aps_A 172 A-----AGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRP--TDP---LAPEEVKPLLVKVSLAVAGFIAIIVVMNLV 241 (491)
T ss_dssp H-----SCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCC--SCC---CSHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_pred h-----hhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCC--CCc---cccchhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8 899999999888777666655543322111110000 000 001010110000
Q ss_pred ---------------------------h-------hhhhhhhHHHHHHHHHHhhhh-hhhHHHhHHHHHHH-hCCChhHH
Q 010733 218 ---------------------------A-------KMVIKIPTFQIIVAQGVFGSF-SGSAFAFAAMWLEL-IGFSHKLT 261 (502)
Q Consensus 218 ---------------------------~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~g~s~~~~ 261 (502)
+ ....+....+......+.... ......++|.+.++ .+.+..+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (491)
T 4aps_A 242 GWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPV 321 (491)
T ss_dssp SSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCS
T ss_pred cCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCH
Confidence 0 001111112222222222222 23444578888875 67776677
Q ss_pred HHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhh--cC-CCCchHHHHHHHHHHHHHhh
Q 010733 262 AFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLV--LP-DDPSTAFLHGLALFIMGLCM 338 (502)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~g~~~ 338 (502)
+.......++.+++.++.+++.||++||+....+.... ......+......... .. ..+...+......++.|++.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 400 (491)
T 4aps_A 322 SWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAV-GLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGE 400 (491)
T ss_dssp GGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHH-HHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHH
Confidence 78888888999999999999999999986432111111 1111111111111100 00 11123344556677788888
Q ss_pred hcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHH
Q 010733 339 SWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 339 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~ 387 (502)
+...+ ....++.|..|++.|++++|+.+....+|+.++|.+.+.+.+.
T Consensus 401 ~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~ 448 (491)
T 4aps_A 401 MLISP-VGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK 448 (491)
T ss_dssp HTTTT-HHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred HHHhH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88777 7889999999999999999999999999999999998877543
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.97 E-value=5.9e-30 Score=250.69 Aligned_cols=356 Identities=12% Similarity=0.053 Sum_probs=227.2
Q ss_pred HHHHHHHHHHHHHHhhccchhhHHH-HhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHH
Q 010733 7 TLVLVNFAAIMERADESMLPGVYKE-VGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAAT 85 (502)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~ 85 (502)
.+..+....++.........+.+|. +++++|.++.+.|++.+.+.+++.++++++|+++||+|||++++++..+++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~ 87 (417)
T 2cfq_A 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMF 87 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 3445555555555555555566665 566799999999999999999999999999999999999999999888776532
Q ss_pred H---HHHhhhhHH-HHHHHHHHHHhhhhhhhhHHHHHHhhccCc--ccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccC
Q 010733 86 F---LVAFSSTFF-QVAVSRGLNGIGLAIVIPAIQSLVADSTDE--TNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFM 159 (502)
Q Consensus 86 ~---~~~~~~~~~-~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~ 159 (502)
. .+.+++... .++..+++.|++.+...+.....+.++.++ ++|+...+....+..+|..++|.+++++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~---- 163 (417)
T 2cfq_A 88 APFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT---- 163 (417)
T ss_dssp HHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 2 223333221 234566666666655555444555555433 456777888888899999999999999886
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCccCCCCCCcchhhhHHHHHHhhhhhhhhHHHHHHHHHHhhhh
Q 010733 160 GIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTKIDHKPRRPFWADIKDLITDAKMVIKIPTFQIIVAQGVFGSF 239 (502)
Q Consensus 160 ~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (502)
.+||+.|++.++..++..+..+..+|++++..+++++++++.++.. .++.+++++++.++......+....
T Consensus 164 --~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (417)
T 2cfq_A 164 --INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFS-------LKLALELFRQPKLWFLSLYVIGVSC 234 (417)
T ss_dssp --HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCC-------HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --hchhHHHHHHHHHHHHHHHHHHHcCccccccccccccccccccccc-------HHHHHHHhcCCchhhHHHHHHHHHH
Confidence 5899999988777555554444455444221111111011111111 1233456677777655544333333
Q ss_pred hh-hHHHhHHHHHHH-hC---CChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 010733 240 SG-SAFAFAAMWLEL-IG---FSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLL 314 (502)
Q Consensus 240 ~~-~~~~~~~~~~~~-~g---~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (502)
.+ ....+.|.|+++ ++ .+....++..+...++.+++.++.+++.||++||+ .... ..... . .....
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----~l~~-~~~~~--~-~~~~~ 305 (417)
T 2cfq_A 235 TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN-----ALLL-AGTIM--S-VRIIG 305 (417)
T ss_dssp HHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-----HHHH-HHHHH--H-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH-----HHHH-HHHHH--H-HHHHH
Confidence 22 333567888764 33 22445577777888888999999999999999984 2211 11111 1 11111
Q ss_pred hhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHH-HhhhhhhhchhHHHHHHHHHHH
Q 010733 315 LVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALD-QSFESIPSSFAPAVVGILAQHV 388 (502)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~~~~i~~~~~g~l~~~~ 388 (502)
. ...++.+ .+.+..++.+++.+...+ ....+..|.+|++.|+++.++. +..+.+|+.++|.+.|.+.+..
T Consensus 306 ~--~~~~~~~-~~~~~~~l~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~ 376 (417)
T 2cfq_A 306 S--SFATSAL-EVVILKTLHMFEVPFLLV-GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI 376 (417)
T ss_dssp H--TTCCSHH-HHHHHTTHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS
T ss_pred H--HHhccHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc
Confidence 1 1122222 233333444554444333 4578999999999999999994 8888999999999999998863
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=1.6e-28 Score=248.33 Aligned_cols=368 Identities=11% Similarity=0.032 Sum_probs=230.4
Q ss_pred HHHHHHHHHHHHHhhccchhhH-HHHhhhcc------CCCccchHHHHHHHHHHHHhhhhhhHhhhcc-CchHHHHHHHH
Q 010733 8 LVLVNFAAIMERADESMLPGVY-KEVGAALH------TDPTGLGSLTLFRSIVQSFCYPLAAYLSAHH-NRAHVIALGAF 79 (502)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~------~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-G~r~~~~~~~~ 79 (502)
++.+.+..++..+..+...+.+ +++.+++| .+..+.|++.+++.++..++.+++|+++||+ |||+++.++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~ 93 (524)
T 2xut_A 14 IPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSL 93 (524)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 3445555666555555444444 45778899 9999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHhhh-hHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHH---HHHHHhhhHhHHHHHHHHHHh
Q 010733 80 LWAAATFLVAFSS-TFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGW---LQLTGYLGSVLGGFCSVLIAS 155 (502)
Q Consensus 80 l~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~g~~l~~~l~~ 155 (502)
+.+++.+++++++ +++.+++.|++.|++.+...+...+++.|++|+++|+++.+. .+.+.++|.+++|.+++.+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 173 (524)
T 2xut_A 94 IYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK 173 (524)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999 999999999999999999999999999999999999877666 999999999999999999988
Q ss_pred hccCCCcchhHHHHHHHHHHHHHHHHHHhhccCCcccccCCCc-cCC-C------CCCcchhhhHHHH------------
Q 010733 156 TSFMGIPGWRLAFHLVGLISVIVGVLVHVYANDPRCLAKDGTK-IDH-K------PRRPFWADIKDLI------------ 215 (502)
Q Consensus 156 ~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~------~~~~~~~~~~~~~------------ 215 (502)
. .+||+.|++.+++.++..++.+...++.+..+.+++. .+. + +.+....+.....
T Consensus 174 ~-----~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (524)
T 2xut_A 174 N-----FGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYA 248 (524)
T ss_dssp T-----SCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHT
T ss_pred c-----ccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhh
Confidence 7 8999999998888776665554432221111110000 000 0 0000000000000
Q ss_pred --------------------------HHh---h---------hhhhhhHHHHHHHHHHhhhhhhhH----HHhHHHHHHH
Q 010733 216 --------------------------TDA---K---------MVIKIPTFQIIVAQGVFGSFSGSA----FAFAAMWLEL 253 (502)
Q Consensus 216 --------------------------~~~---~---------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 253 (502)
..+ . .....+...............+.. ....+.+..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (524)
T 2xut_A 249 LVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQAND 328 (524)
T ss_dssp GGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHH
T ss_pred hcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHh
Confidence 000 0 001111221111111111111111 1223333333
Q ss_pred hCCCh-hHHHHHHHHHHHHHhhhhhhhHhHh----hhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCC------CCc
Q 010733 254 IGFSH-KLTAFLMTLFVIAFCLGGLFGGKMG----DILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPD------DPS 322 (502)
Q Consensus 254 ~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 322 (502)
.+.+. ...+.+.....++.+++..+.+++. +|.++|... ....... ..+............ ...
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~ 403 (524)
T 2xut_A 329 MVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTA---LRKMGAG--IAITGLSWIVVGTIQLMMDGGSAL 403 (524)
T ss_dssp SCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------CC---HHHHHTH--HHHHHHHHHTTTTTTTTTTTTCCC
T ss_pred cCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCCh---HHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCc
Confidence 33322 1345555555555556666666553 343332111 1111111 111111111111111 112
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHH
Q 010733 323 TAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQ 386 (502)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~ 386 (502)
..+.+....++.|++.+...+ ...++..|..|++.||+++|+.++..++|+.++|.+.|.+.+
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSA-TGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHH-HHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 233344566777888777776 778899999999999999999999999999999999998765
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.57 E-value=3.2e-14 Score=140.44 Aligned_cols=176 Identities=14% Similarity=0.026 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHhhh-ccCCCccchHHHHHHHHHHHHhhhhhhHhhhcc--CchHHHHHHHHHHH
Q 010733 6 LTLVLVNFAAIMERADESMLPGVYKEVGAA-LHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHH--NRAHVIALGAFLWA 82 (502)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~--G~r~~~~~~~~l~~ 82 (502)
+.++...+..++............|.+.++ +|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+..+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 345556666666666666666777777666 899999999999999999999999999999999 99999888887776
Q ss_pred -HHHHHHHhh--hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhh-hHhHHHHHHHHHHhhcc
Q 010733 83 -AATFLVAFS--STFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYL-GSVLGGFCSVLIASTSF 158 (502)
Q Consensus 83 -~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~l~~~l~~~~~ 158 (502)
++.++..+. .+.+.+.+..++.|++.+...+....++.|.+|+++|++++++.+....+ |..++|.+.+.+.+.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~-- 409 (451)
T 1pw4_A 332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF-- 409 (451)
T ss_dssp HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 666666666 37888888889999999999999999999999999999999999999999 999999999999997
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhhc
Q 010733 159 MGIPGWRLAFHLVGLISVIVGVLVHVYA 186 (502)
Q Consensus 159 ~~~~~w~~~f~~~~~~~~~~~~~~~~~~ 186 (502)
.+|+..|++.+++.++..++.+...
T Consensus 410 ---~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 410 ---FGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp ---SCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999888888777766654
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.46 E-value=3.5e-13 Score=131.45 Aligned_cols=143 Identities=8% Similarity=0.128 Sum_probs=124.2
Q ss_pred CccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 010733 40 PTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLV 119 (502)
Q Consensus 40 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 119 (502)
..+.+++.++..++..++.++.|++.||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888888899999999999999999999999999888888888888888888888888888777778888999
Q ss_pred hhccCcccchhHHHH-HHHHHhhhHhHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHhhcc
Q 010733 120 ADSTDETNRGMAFGW-LQLTGYLGSVLGGFCSVLIASTSFMGIPGWRLAFHLVGLISVIVGVLVHVYAN 187 (502)
Q Consensus 120 ~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~l~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~ 187 (502)
.|.+|++.|+++.++ .+....+|..++|.+++.+.+. .+++..|.+.+++.++..++.+...+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~-----~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES-----IGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH-----SHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh-----cCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999998 4788889999999999999887 78999999988888877776655444
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.42 E-value=3.1e-12 Score=125.59 Aligned_cols=165 Identities=11% Similarity=0.008 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHH-hhh-ccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHH
Q 010733 8 LVLVNFAAIMERADESMLPGVYKEV-GAA-LHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAAT 85 (502)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~i-~~~-~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~ 85 (502)
+....+..++............|.+ .++ +|.+..+.+++.+.+.++..++.++.|++.||+|||+++..+.++.+++.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~ 339 (438)
T 3o7q_A 260 WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALC 339 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 3444444455444444444555555 444 59999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhccCCCcc-h
Q 010733 86 FLVAFSSTFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTSFMGIPG-W 164 (502)
Q Consensus 86 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~-w 164 (502)
++..+.++.+.++.. ++.|++.+...+...++..|.+|++ ++.+.++.. ...+|..++|.+.+.+.+. .| +
T Consensus 340 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~-----~g~~ 411 (438)
T 3o7q_A 340 LISAFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDA-----AGNI 411 (438)
T ss_dssp HHHHHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHH-----HTSS
T ss_pred HHHHHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHH-----hcch
Confidence 999998887766555 8889999999999999999999865 888888877 6679999999999999997 77 9
Q ss_pred hHHHHHHHHHHHHHHH
Q 010733 165 RLAFHLVGLISVIVGV 180 (502)
Q Consensus 165 ~~~f~~~~~~~~~~~~ 180 (502)
+..|++.++..++..+
T Consensus 412 ~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 412 PTAELIPALCFAVIFI 427 (438)
T ss_dssp GGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999887655444433
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.37 E-value=3.6e-12 Score=127.19 Aligned_cols=173 Identities=16% Similarity=0.151 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHhhccchhhHHHHh-hhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHH-----HHHHHHHH
Q 010733 10 LVNFAAIMERADESMLPGVYKEVG-AALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIA-----LGAFLWAA 83 (502)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~-----~~~~l~~~ 83 (502)
.+++..+............+|.+. +.++.+..+.+++.+...++..++.++.|++.||+|||+... .+.++.++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~ 366 (491)
T 4aps_A 287 PLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGL 366 (491)
T ss_dssp HHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 334344444444444555555544 446777788999999999999999999999999999987654 77777777
Q ss_pred HHHHHHhhh---------hHHHHHHHHHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHH
Q 010733 84 ATFLVAFSS---------TFFQVAVSRGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIA 154 (502)
Q Consensus 84 ~~~~~~~~~---------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~ 154 (502)
+.++..+.. +.+.+.+.-++.|++.+...+....++.|.+|+++|++++|+.+....+|..+++.+.+.+.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~ 446 (491)
T 4aps_A 367 SFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYN 446 (491)
T ss_dssp HHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777766643 67778888899999999999999999999999999999999999999999999999988876
Q ss_pred hhccCCCcchhHHHHHHHHHHHHHHHHHHhhccC
Q 010733 155 STSFMGIPGWRLAFHLVGLISVIVGVLVHVYAND 188 (502)
Q Consensus 155 ~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~ 188 (502)
+ .++.+.|++.++..++..++.+.+.++
T Consensus 447 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 447 A------KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp G------SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred c------ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 467778888888888777776665443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.29 E-value=7.6e-11 Score=117.55 Aligned_cols=181 Identities=12% Similarity=0.083 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHhhccchhhHHHHhhhccCCCccchHHHHHHHHHHHHhhhhhhHhhhccCchHHHHHHHHHHHHHHHHHH
Q 010733 10 LVNFAAIMERADESMLPGVYKEVGAALHTDPTGLGSLTLFRSIVQSFCYPLAAYLSAHHNRAHVIALGAFLWAAATFLVA 89 (502)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G~r~~~~~~~~l~~~~~~~~~ 89 (502)
......+........+....|.+.++.+.+..+.........+...++.++.+++.||+|||+.++.+....+++.+..+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~ 360 (491)
T 4gc0_A 281 GVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG 360 (491)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHH
Confidence 33333333444444455556778888888877777777888888999999999999999999999999888888777665
Q ss_pred hhh-----hHHHHHHH-HHHHHhhhhhhhhHHHHHHhhccCcccchhHHHHHHHHHhhhHhHHHHHHHHHHhhc-cCCCc
Q 010733 90 FSS-----TFFQVAVS-RGLNGIGLAIVIPAIQSLVADSTDETNRGMAFGWLQLTGYLGSVLGGFCSVLIASTS-FMGIP 162 (502)
Q Consensus 90 ~~~-----~~~~l~~~-r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~-~~~~~ 162 (502)
... +...+... -+..+++ ....+....+.+|.+|.+.|++++|+......+|..+++.+...+.+.. .....
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~ 439 (491)
T 4gc0_A 361 TAFYTQAPGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHF 439 (491)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHH
T ss_pred HHHhcccchHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 432 22222222 2222222 2345677889999999999999999999999999999888776654320 00014
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhccCCcc
Q 010733 163 GWRLAFHLVGLISVIVGVLVHVYANDPRC 191 (502)
Q Consensus 163 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 191 (502)
++.+.|++.++++++..+..+++.+|++.
T Consensus 440 ~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 440 HNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 66778889899888888877765555443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.18 E-value=1e-10 Score=112.23 Aligned_cols=132 Identities=12% Similarity=0.108 Sum_probs=101.5
Q ss_pred HHHhHHHHHHHhCCChhHHHHHHHHHHHHHhhhhhhhHhHhhhhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 010733 243 AFAFAAMWLELIGFSHKLTAFLMTLFVIAFCLGGLFGGKMGDILAQRLPDSGRVILSQISAASVIPTAAVLLLVLPDDPS 322 (502)
Q Consensus 243 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (502)
....+|.+.+++|.++.+.+++.+...++..++.++.|+++||+|||+.. ..... ...+....... .+
T Consensus 19 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~----~~~~~----~~~~~~~~~~~----~~ 86 (375)
T 2gfp_A 19 YIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI----LVGMS----IFMLATLVAVT----TS 86 (375)
T ss_dssp HHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC----HHHHH----HHHHHHHHHHH----HH
T ss_pred HhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH----HHHHH----HHHHHHHHHHH----hc
Confidence 33457777778999999999999999999999999999999999999754 11111 11111111111 12
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhHHHhhhhhhhchhHHHHHHHHHH
Q 010733 323 TAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYALDQSFESIPSSFAPAVVGILAQH 387 (502)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~i~~~~~g~l~~~ 387 (502)
+.+.+.+..++.|++.+...+ ...+++.|..|+++|++++++.+....+|..++|.+.+.+.+.
T Consensus 87 ~~~~l~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 150 (375)
T 2gfp_A 87 SLTVLIAASAMQGMGTGVGGV-MARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM 150 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred cHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 344455667778888887777 7889999999999999999999999999999999999988765
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.09 E-value=4.2e-10 Score=113.14 Aligned_cols=146 Identities=14% Similarity=0.053 Sum_probs=105.3
Q ss_pred HHHHHHhhhhhhhHHHhHHHHHH-HhC------CChhHHHHHHHHHHHHHhhhhhhhHhHhhhh-hhcCCCchhHHHHHH
Q 010733 230 IVAQGVFGSFSGSAFAFAAMWLE-LIG------FSHKLTAFLMTLFVIAFCLGGLFGGKMGDIL-AQRLPDSGRVILSQI 301 (502)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~-~~g------~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~ 301 (502)
.....+.....+....+++.|++ ++| .++.+.+++.+...++..++.++.|+++||+ |||+ .+....
T Consensus 18 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~-----~~~~~~ 92 (524)
T 2xut_A 18 IASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN-----TILWLS 92 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH-----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----HHHHHH
Confidence 33344444445566678888887 588 9999999999999999999999999999999 9984 222111
Q ss_pred HHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhcCCCCcchhhhhhccCCCCchhhHhH---HHhhhhhhhchhH
Q 010733 302 SAASVIPTAAVLLLVLPDDPSTAFLHGLALFIMGLCMSWNAPATNNPIFAEIVPERCRTSIYAL---DQSFESIPSSFAP 378 (502)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~~~~i~~ 378 (502)
... .+..+. .... +.+.+.+.+..++.|++.+...+ ...+++.|.+|+++|+++.+. .+...++|..++|
T Consensus 93 -~~~--~~~~~~-~~~~--~~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~ 165 (524)
T 2xut_A 93 -LIY--CVGHAF-LAIF--EHSVQGFYTGLFLIALGSGGIKP-LVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFAS 165 (524)
T ss_dssp -HHH--HHHHHH-HHHT--SSCHHHHHHHHHHHHHHHHTTHH-HHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHH--HHHHHH-HHHh--cccHHHHHHHHHHHHHhccccch-hHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 111111 1111 21233345667778998888877 788999999999999876666 8888999999999
Q ss_pred HHHHHHHHH
Q 010733 379 AVVGILAQH 387 (502)
Q Consensus 379 ~~~g~l~~~ 387 (502)
.+.+.+.+.
T Consensus 166 ~~~~~l~~~ 174 (524)
T 2xut_A 166 LSMPLLLKN 174 (524)
T ss_dssp HTSTHHHHT
T ss_pred HHHHHHhcc
Confidence 999998875
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=53.80 E-value=4.8 Score=19.59 Aligned_cols=14 Identities=21% Similarity=0.226 Sum_probs=11.4
Q ss_pred hhhHhhhccCchHH
Q 010733 60 LAAYLSAHHNRAHV 73 (502)
Q Consensus 60 ~~G~l~dr~G~r~~ 73 (502)
+.|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 36889999999875
No 16
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=21.51 E-value=5e+02 Score=24.18 Aligned_cols=13 Identities=8% Similarity=0.194 Sum_probs=5.9
Q ss_pred hhhchhHHHHHHH
Q 010733 372 IPSSFAPAVVGIL 384 (502)
Q Consensus 372 ~~~~i~~~~~g~l 384 (502)
+++++|....|..
T Consensus 302 v~Gi~G~l~~glf 314 (407)
T 3b9w_A 302 LPGLLGGFSAILI 314 (407)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
Done!