BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010734
(502 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FPM|A Chain A, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FPM|B Chain B, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|A Chain A, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|B Chain B, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|3PZX|A Chain A, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3PZX|B Chain B, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3QB6|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3QB6|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3RBO|A Chain A, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3RBO|B Chain B, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3SIN|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3SIN|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3QUS|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
pdb|3QUS|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
Length = 557
Score = 377 bits (969), Expect = e-105, Method: Compositional matrix adjust.
Identities = 201/415 (48%), Positives = 258/415 (62%), Gaps = 16/415 (3%)
Query: 88 LDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLA 147
L+IDP +ITWRRV+D+NDR LR I IG G + G+ RETGFDISVASE+MA L L + L
Sbjct: 157 LNIDPRTITWRRVIDLNDRALRNIVIGLGGKANGVPRETGFDISVASEVMACLCLASDLM 216
Query: 148 DMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFA 207
D++ER ++V+G + G P+TA DL G++ +LMKDAI P L+QTLE TP +H GPFA
Sbjct: 217 DLKERFSRIVVGYTYDGKPVTAGDLEAQGSMALLMKDAIKPNLVQTLENTPAFIHGGPFA 276
Query: 208 NIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVAT 267
NIAHG +SI+A K ALKL +VVTEAGFGAD+GAEKF ++KCRY+G P VIVAT
Sbjct: 277 NIAHGCNSIIATKTALKL---ADYVVTEAGFGADLGAEKFYDVKCRYAGFKPDATVIVAT 333
Query: 268 IRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFA 327
+RALKMHGG P+ EN+ + G NL +HI N +G VVA+N F
Sbjct: 334 VRALKMHGGVPK--------SDLATENLEALREGFANLEKHIENIGKFGVPAVVAINAFP 385
Query: 328 TDSKXXXXXXXXXXXXXXXXXXVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLD 387
TD++ V A GG+G ++L V + E+ LY LD
Sbjct: 386 TDTEAELNLLYELCAKAGAE---VALSWAKGGEGGLELARKVLQTLESRPSNFHVLYNLD 442
Query: 388 VSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYSFSHNAAEKG 446
+SIK+KI IA YGA GV Y+ EA+K I+ Y G+ LP+ MAKTQYSFS + + G
Sbjct: 443 LSIKDKIAKIATEIYGADGVNYTAEADKAIQRYESLGYGNLPVVMAKTQYSFSDDMTKLG 502
Query: 447 APTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDVDTATGKVVGL 501
P F + +R+VR S G I P+ G + TMPGLP RP ID+D A G + GL
Sbjct: 503 RPRNFTITVREVRLSAGGRLIVPITGAIMTMPGLPKRPAACNIDID-ADGVITGL 556
>pdb|1EG7|A Chain A, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
pdb|1EG7|B Chain B, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
Length = 557
Score = 375 bits (962), Expect = e-104, Method: Compositional matrix adjust.
Identities = 200/415 (48%), Positives = 257/415 (61%), Gaps = 16/415 (3%)
Query: 88 LDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLA 147
L+IDP +ITWRRV+D+N+R LR I IG G + G+ RETGFDISVASE+MA L L + L
Sbjct: 157 LNIDPRTITWRRVIDLNERALRNIVIGLGGKANGVPRETGFDISVASEVMACLCLASDLM 216
Query: 148 DMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFA 207
D++ER + V+G + G P+TA DL G++ +LMKDAI P L+QTLE TP +H GPFA
Sbjct: 217 DLKERFSRKVVGYTYDGKPVTAGDLEAQGSMALLMKDAIKPNLVQTLENTPAFIHGGPFA 276
Query: 208 NIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVAT 267
NIAHG +SI+A K ALKL +VVTEAGFGAD+GAEKF ++KCRY+G P VIVAT
Sbjct: 277 NIAHGCNSIIATKTALKL---ADYVVTEAGFGADLGAEKFYDVKCRYAGFKPDATVIVAT 333
Query: 268 IRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFA 327
+RALKMHGG P+ EN+ + G NL +HI N +G VVA+N F
Sbjct: 334 VRALKMHGGVPK--------SDLATENLEALREGFANLEKHIENIGKFGVPAVVAINAFP 385
Query: 328 TDSKXXXXXXXXXXXXXXXXXXVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLD 387
TD++ V A GG+G ++L V + E+ LY LD
Sbjct: 386 TDTEAELNLLYELCAKAGAE---VALSWAKGGEGGLELARKVLQTLESRPSNFHVLYNLD 442
Query: 388 VSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYSFSHNAAEKG 446
+SIK+KI IA YGA GV Y+ EA+K I+ Y G+ LP+ MAKTQYSFS + + G
Sbjct: 443 LSIKDKIAKIATEIYGADGVNYTAEADKAIQRYESLGYGNLPVVMAKTQYSFSDDMTKLG 502
Query: 447 APTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDVDTATGKVVGL 501
P F + +R+VR S G I P+ G + TMPGLP RP ID+D A G + GL
Sbjct: 503 RPRNFTITVREVRLSAGGRLIVPITGAIMTMPGLPKRPAACNIDID-ADGVITGL 556
>pdb|3DO6|A Chain A, Crystal Structure Of Putative Formyltetrahydrofolate
Synthetase (Tm1766) From Thermotoga Maritima At 1.85 A
Resolution
pdb|3DO6|B Chain B, Crystal Structure Of Putative Formyltetrahydrofolate
Synthetase (Tm1766) From Thermotoga Maritima At 1.85 A
Resolution
Length = 543
Score = 298 bits (762), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 171/417 (41%), Positives = 241/417 (57%), Gaps = 16/417 (3%)
Query: 87 RLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSL 146
L ID + W+R D NDR LR I IG G G RE F I+ ASE+ A+LAL+ +
Sbjct: 142 ELKIDITRVFWKRTXDXNDRALRSIVIGLGGSANGFPREDSFIITAASEVXAILALSENX 201
Query: 147 ADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPF 206
D++ERLGK+++ + DLG+ GA VL+KDAINP L+QT EGTP L+H GPF
Sbjct: 202 KDLKERLGKIIVALDADRKIVRISDLGIQGAXAVLLKDAINPNLVQTTEGTPALIHCGPF 261
Query: 207 ANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVA 266
ANIAHG +SI+A K A KL + VTEAGFGAD+GAEKF++ R G P AV+VA
Sbjct: 262 ANIAHGTNSIIATKXAXKL---SEYTVTEAGFGADLGAEKFIDFVSRVGGFYPNAAVLVA 318
Query: 267 TIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMF 326
T+RALK HGG L + + EN+ ++ G NL H+ N + + VVVA+N F
Sbjct: 319 TVRALKYHGGA-------NLKNIH-EENLEALKEGFKNLRVHVENLRKFNLPVVVALNRF 370
Query: 327 ATDSKXXXXXXXXXXXXXXXXXXVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPL 386
+TD++ V G +G V+L AV A ++V +P +LY
Sbjct: 371 STDTE-KEIAYVVKECEKLGVRVAVSEVFKKGSEGGVELAKAVAEAAKDV-EP-AYLYEX 427
Query: 387 DVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYSFSHNAAEK 445
+ +++KI+ +A+ Y A VE+S+ A+ ++ GF LP+ +AKT S SH+ + +
Sbjct: 428 NDPVEKKIEILAKEIYRAGRVEFSDTAKNALKFIKKHGFDELPVIVAKTPKSISHDPSLR 487
Query: 446 GAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDVDTATGKVVGLS 502
GAP G+ + D+ S GAGF+ L G ++ PGLP +P DVD +G +VG+S
Sbjct: 488 GAPEGYTFVVSDLFVSAGAGFVVALSGDINLXPGLPKKPNALNXDVDD-SGNIVGVS 543
>pdb|2EO2|A Chain A, Solution Structure Of The Insertion Region (510-573) Of
Fthfs Domain From Mouse Methylenetetrahydrofolate
Dehydrogenase (Nadp+ Dependent) 1-Like Protein
Length = 71
Score = 82.4 bits (202), Expect = 5e-16, Method: Composition-based stats.
Identities = 39/64 (60%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 35 SQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPAS 94
+Q+DKAL+NRL P G R FS I RLKKLGI KT P LT EE+ +FARL+IDPA+
Sbjct: 9 TQTDKALYNRLVPL-VNGVREFSEIQLSRLKKLGIHKTDPSTLTEEEVRKFARLNIDPAT 67
Query: 95 ITWR 98
ITW+
Sbjct: 68 ITWQ 71
>pdb|1WYT|A Chain A, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Apo Form
pdb|1WYT|C Chain C, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Apo Form
pdb|1WYU|A Chain A, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|C Chain C, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|E Chain E, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|G Chain G, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYV|A Chain A, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|C Chain C, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|E Chain E, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|G Chain G, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
Length = 438
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 15/59 (25%)
Query: 187 NPTLMQTLEGTPVLVHAGPFANIAHGNSSI---VADKIALKLVGPGGFVVTEAGFGADI 242
NP + LE GPFA AHG ++ VAD ++L ++ P G +GADI
Sbjct: 204 NPNFLGALEDL------GPFAEAAHGAGALFVAVADPLSLGVLKPPG------AYGADI 250
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,984,997
Number of Sequences: 62578
Number of extensions: 563873
Number of successful extensions: 1520
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1501
Number of HSP's gapped (non-prelim): 9
length of query: 502
length of database: 14,973,337
effective HSP length: 103
effective length of query: 399
effective length of database: 8,527,803
effective search space: 3402593397
effective search space used: 3402593397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)