Query 010734
Match_columns 502
No_of_seqs 209 out of 1049
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 03:57:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010734.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010734hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02759 Formate--tetrahydrofo 100.0 9E-235 2E-239 1841.7 48.1 502 1-502 135-637 (637)
2 PTZ00386 formyl tetrahydrofola 100.0 4E-230 9E-235 1803.2 47.3 490 1-502 134-625 (625)
3 PRK13507 formate--tetrahydrofo 100.0 2E-219 5E-224 1714.7 45.1 458 1-502 128-587 (587)
4 PRK13506 formate--tetrahydrofo 100.0 1E-218 3E-223 1710.9 44.1 458 1-502 119-578 (578)
5 PF01268 FTHFS: Formate--tetra 100.0 1E-216 3E-221 1696.6 33.0 437 1-502 119-557 (557)
6 COG2759 MIS1 Formyltetrahydrof 100.0 1E-213 3E-218 1633.9 41.0 437 1-502 117-554 (554)
7 PRK13505 formate--tetrahydrofo 100.0 9E-212 2E-216 1661.8 43.4 437 1-502 120-557 (557)
8 cd00477 FTHFS Formyltetrahydro 100.0 8E-210 2E-214 1632.7 42.3 420 1-485 103-524 (524)
9 KOG4230 C1-tetrahydrofolate sy 100.0 1E-204 3E-209 1594.6 38.4 499 1-502 430-935 (935)
10 PRK15452 putative protease; Pr 90.3 1.9 4.2E-05 46.9 10.3 155 258-433 3-175 (443)
11 PLN02591 tryptophan synthase 90.1 5.2 0.00011 40.5 12.5 143 275-431 28-194 (250)
12 CHL00200 trpA tryptophan synth 87.7 8 0.00017 39.4 12.0 144 275-431 41-207 (263)
13 COG1149 MinD superfamily P-loo 87.7 0.58 1.3E-05 48.4 3.9 171 138-401 108-281 (284)
14 TIGR00262 trpA tryptophan synt 86.9 10 0.00022 38.3 12.2 154 267-431 26-203 (256)
15 PRK13111 trpA tryptophan synth 86.5 6.8 0.00015 39.7 10.7 153 267-432 28-206 (258)
16 PF02421 FeoB_N: Ferrous iron 85.8 5.1 0.00011 37.9 8.8 58 309-369 98-156 (156)
17 TIGR00436 era GTP-binding prot 83.8 9.5 0.00021 37.9 10.2 89 309-399 100-189 (270)
18 TIGR00475 selB selenocysteine- 82.8 7.2 0.00016 43.7 9.8 99 243-375 59-167 (581)
19 cd04165 GTPBP1_like GTPBP1-lik 82.7 3.9 8.5E-05 40.1 6.9 68 243-341 93-163 (224)
20 COG0532 InfB Translation initi 82.2 3.4 7.4E-05 46.0 6.9 102 242-374 63-170 (509)
21 PRK00089 era GTPase Era; Revie 82.0 18 0.00039 36.1 11.4 75 307-387 104-180 (292)
22 COG0370 FeoB Fe2+ transport sy 81.3 5.4 0.00012 45.7 8.2 90 303-398 92-186 (653)
23 TIGR00677 fadh2_euk methylenet 79.9 6.2 0.00014 40.3 7.5 128 205-346 138-277 (281)
24 cd02033 BchX Chlorophyllide re 78.2 48 0.001 35.0 13.5 105 294-419 183-291 (329)
25 cd01828 sialate_O-acetylestera 78.1 18 0.0004 32.5 9.2 53 293-347 65-126 (169)
26 PRK05286 dihydroorotate dehydr 77.9 53 0.0011 34.4 13.7 104 301-410 123-246 (344)
27 PF00009 GTP_EFTU: Elongation 77.4 13 0.00029 34.4 8.3 69 304-373 110-186 (188)
28 cd04145 M_R_Ras_like M-Ras/R-R 77.0 15 0.00033 32.1 8.1 56 315-373 106-163 (164)
29 cd04127 Rab27A Rab27a subfamil 76.1 7.9 0.00017 34.8 6.3 68 303-373 103-176 (180)
30 cd04138 H_N_K_Ras_like H-Ras/N 76.0 17 0.00036 31.5 8.1 55 315-372 105-160 (162)
31 PRK15494 era GTPase Era; Provi 76.0 20 0.00043 37.3 9.9 86 308-399 152-241 (339)
32 PRK07259 dihydroorotate dehydr 75.2 62 0.0014 32.8 13.0 92 313-409 88-189 (301)
33 TIGR00485 EF-Tu translation el 74.4 16 0.00034 38.6 8.9 72 243-345 84-162 (394)
34 COG0826 Collagenase and relate 74.2 8 0.00017 41.0 6.6 115 304-433 50-178 (347)
35 TIGR00676 fadh2 5,10-methylene 74.1 8.9 0.00019 38.8 6.6 102 218-326 147-261 (272)
36 PRK12298 obgE GTPase CgtA; Rev 73.5 27 0.00058 37.4 10.4 69 315-388 274-343 (390)
37 TIGR03470 HpnH hopanoid biosyn 73.2 12 0.00025 38.7 7.4 56 303-358 149-204 (318)
38 PTZ00141 elongation factor 1- 72.9 4.1 8.8E-05 44.1 4.2 73 243-342 94-175 (446)
39 PRK00098 GTPase RsgA; Reviewed 72.5 33 0.0007 35.1 10.3 60 305-367 100-160 (298)
40 PRK13125 trpA tryptophan synth 72.2 66 0.0014 31.9 12.1 127 290-430 50-189 (244)
41 PF01261 AP_endonuc_2: Xylose 71.7 26 0.00057 31.8 8.6 87 298-387 66-166 (213)
42 COG0159 TrpA Tryptophan syntha 71.4 39 0.00084 35.0 10.5 150 267-431 33-210 (265)
43 PRK13210 putative L-xylulose 5 70.6 40 0.00088 33.0 10.2 102 292-397 83-200 (284)
44 cd04112 Rab26 Rab26 subfamily. 70.3 7.2 0.00016 36.1 4.7 59 314-375 104-164 (191)
45 PRK09554 feoB ferrous iron tra 70.3 11 0.00025 43.8 7.2 83 312-400 108-192 (772)
46 cd00019 AP2Ec AP endonuclease 69.9 35 0.00076 33.7 9.7 96 290-387 72-178 (279)
47 PRK07565 dihydroorotate dehydr 69.5 62 0.0014 33.6 11.7 49 300-351 84-133 (334)
48 PRK10512 selenocysteinyl-tRNA- 68.9 22 0.00048 40.3 8.9 101 243-374 60-166 (614)
49 TIGR00231 small_GTP small GTP- 68.9 28 0.0006 29.1 7.6 59 308-368 100-158 (161)
50 cd00945 Aldolase_Class_I Class 68.1 37 0.00079 30.9 8.7 100 303-409 97-201 (201)
51 cd04106 Rab23_lke Rab23-like s 67.9 26 0.00057 30.6 7.5 52 315-369 105-158 (162)
52 TIGR02493 PFLA pyruvate format 67.6 17 0.00037 35.0 6.8 43 304-346 144-188 (235)
53 cd01994 Alpha_ANH_like_IV This 65.9 40 0.00088 32.6 8.9 127 316-450 23-160 (194)
54 PF00290 Trp_syntA: Tryptophan 65.4 11 0.00023 38.6 5.1 151 267-431 26-203 (259)
55 cd01822 Lysophospholipase_L1_l 65.2 1E+02 0.0022 27.5 12.7 107 214-347 23-137 (177)
56 COG2229 Predicted GTPase [Gene 64.9 19 0.00041 35.6 6.4 88 243-366 77-170 (187)
57 cd04163 Era Era subfamily. Er 64.8 35 0.00077 29.0 7.6 62 307-370 102-165 (168)
58 cd04740 DHOD_1B_like Dihydroor 64.4 1.6E+02 0.0036 29.6 14.0 97 308-409 80-186 (296)
59 PTZ00327 eukaryotic translatio 64.0 30 0.00065 38.0 8.5 99 243-374 126-233 (460)
60 cd04124 RabL2 RabL2 subfamily. 63.8 47 0.001 29.6 8.4 68 302-373 88-157 (161)
61 TIGR00539 hemN_rel putative ox 63.5 25 0.00054 36.7 7.5 81 268-352 103-187 (360)
62 cd04738 DHOD_2_like Dihydrooro 63.4 1.8E+02 0.0039 30.3 13.7 101 305-410 117-237 (327)
63 cd01897 NOG NOG1 is a nucleola 62.9 32 0.00069 30.4 7.1 54 316-372 113-166 (168)
64 PLN00043 elongation factor 1-a 62.3 10 0.00022 41.3 4.5 77 243-346 94-183 (447)
65 cd00154 Rab Rab family. Rab G 62.2 37 0.00079 28.8 7.1 63 303-368 89-156 (159)
66 PRK13813 orotidine 5'-phosphat 62.0 92 0.002 29.9 10.6 44 304-347 94-141 (215)
67 cd01890 LepA LepA subfamily. 62.0 27 0.00059 31.2 6.6 60 314-373 117-176 (179)
68 cd04724 Tryptophan_synthase_al 61.9 89 0.0019 31.1 10.7 127 293-432 50-193 (242)
69 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 61.8 24 0.00052 31.2 6.2 69 302-373 90-163 (166)
70 COG1838 FumA Tartrate dehydrat 61.1 8.7 0.00019 37.8 3.4 153 145-335 12-177 (184)
71 PRK06852 aldolase; Validated 60.6 93 0.002 32.8 11.0 122 301-426 152-290 (304)
72 PRK09856 fructoselysine 3-epim 60.5 73 0.0016 31.2 9.8 59 295-355 82-151 (275)
73 cd00958 DhnA Class I fructose- 59.9 1.2E+02 0.0026 29.4 11.0 90 311-412 117-217 (235)
74 cd00959 DeoC 2-deoxyribose-5-p 59.8 34 0.00075 32.9 7.2 44 316-360 116-159 (203)
75 TIGR02385 RelE_StbE addiction 59.2 12 0.00026 29.9 3.5 50 406-456 2-61 (88)
76 PRK12289 GTPase RsgA; Reviewed 58.2 39 0.00084 35.9 7.9 62 304-368 108-169 (352)
77 PLN02495 oxidoreductase, actin 58.1 84 0.0018 34.0 10.4 116 292-412 86-217 (385)
78 cd00881 GTP_translation_factor 57.6 36 0.00078 30.3 6.6 65 307-373 105-186 (189)
79 cd01866 Rab2 Rab2 subfamily. 57.3 30 0.00065 31.0 6.0 67 303-372 93-164 (168)
80 PRK08318 dihydropyrimidine deh 57.1 1.6E+02 0.0034 31.6 12.2 101 301-408 82-199 (420)
81 cd04139 RalA_RalB RalA/RalB su 56.6 56 0.0012 28.3 7.5 68 304-374 92-162 (164)
82 cd01983 Fer4_NifH The Fer4_Nif 56.3 64 0.0014 25.1 7.2 50 215-269 13-69 (99)
83 PF02171 Piwi: Piwi domain; I 56.1 24 0.00053 35.3 5.7 119 217-345 50-182 (302)
84 PRK04165 acetyl-CoA decarbonyl 56.1 3.3E+02 0.0071 30.3 15.5 150 242-426 75-228 (450)
85 cd01894 EngA1 EngA1 subfamily. 55.9 39 0.00084 29.0 6.3 58 309-371 98-155 (157)
86 cd02940 DHPD_FMN Dihydropyrimi 54.9 2.5E+02 0.0054 28.7 13.6 95 308-409 89-200 (299)
87 PTZ00369 Ras-like protein; Pro 54.9 66 0.0014 29.7 8.0 57 315-374 109-167 (189)
88 PRK15447 putative protease; Pr 54.6 23 0.0005 36.4 5.4 112 304-433 49-177 (301)
89 cd01891 TypA_BipA TypA (tyrosi 54.5 56 0.0012 30.3 7.5 35 309-343 110-147 (194)
90 cd04115 Rab33B_Rab33A Rab33B/R 54.4 70 0.0015 28.7 7.9 58 315-373 108-168 (170)
91 PHA02096 hypothetical protein 54.3 11 0.00024 32.9 2.6 34 294-327 41-76 (103)
92 smart00175 RAB Rab subfamily o 54.0 48 0.001 28.9 6.6 56 315-373 104-161 (164)
93 cd04136 Rap_like Rap-like subf 53.8 62 0.0013 28.2 7.3 55 315-372 105-161 (163)
94 cd01867 Rab8_Rab10_Rab13_like 53.7 65 0.0014 28.8 7.6 56 315-373 107-164 (167)
95 TIGR00036 dapB dihydrodipicoli 53.4 41 0.00088 33.9 6.8 98 304-422 80-178 (266)
96 cd04107 Rab32_Rab38 Rab38/Rab3 53.3 57 0.0012 30.4 7.4 59 314-374 108-168 (201)
97 smart00518 AP2Ec AP endonuclea 53.3 1.1E+02 0.0025 29.9 9.8 96 290-387 71-175 (273)
98 KOG1145 Mitochondrial translat 53.2 24 0.00052 40.3 5.6 129 208-374 161-316 (683)
99 smart00173 RAS Ras subfamily o 52.8 87 0.0019 27.5 8.1 56 315-373 104-161 (164)
100 TIGR00542 hxl6Piso_put hexulos 52.3 75 0.0016 31.4 8.4 88 292-387 83-184 (279)
101 cd01859 MJ1464 MJ1464. This f 52.3 77 0.0017 28.3 7.8 59 313-374 38-96 (156)
102 PRK13209 L-xylulose 5-phosphat 51.7 1.2E+02 0.0026 29.9 9.8 89 293-386 89-188 (283)
103 PRK05306 infB translation init 51.3 47 0.001 39.1 7.7 96 243-371 346-449 (787)
104 cd00876 Ras Ras family. The R 50.8 52 0.0011 28.3 6.3 66 303-371 90-158 (160)
105 cd04104 p47_IIGP_like p47 (47- 50.6 70 0.0015 30.2 7.6 69 307-375 98-185 (197)
106 PF02219 MTHFR: Methylenetetra 49.9 10 0.00023 38.4 2.0 120 212-345 154-287 (287)
107 cd04132 Rho4_like Rho4-like su 49.9 91 0.002 28.3 8.0 59 315-375 104-168 (187)
108 cd01834 SGNH_hydrolase_like_2 49.7 1.8E+02 0.004 25.9 9.9 50 214-264 18-67 (191)
109 TIGR02109 PQQ_syn_pqqE coenzym 49.6 54 0.0012 33.8 7.2 50 302-352 131-180 (358)
110 COG1159 Era GTPase [General fu 49.5 1E+02 0.0022 32.6 9.0 91 308-399 106-197 (298)
111 PF04055 Radical_SAM: Radical 49.4 39 0.00084 29.0 5.3 39 302-340 126-165 (166)
112 TIGR03598 GTPase_YsxC ribosome 48.9 38 0.00083 31.0 5.4 35 311-345 124-162 (179)
113 TIGR03471 HpnJ hopanoid biosyn 48.6 35 0.00076 36.9 5.9 78 267-348 289-369 (472)
114 cd01868 Rab11_like Rab11-like. 48.2 56 0.0012 28.8 6.2 55 315-372 107-163 (165)
115 TIGR02116 toxin_Txe_YoeB toxin 47.9 8.6 0.00019 31.8 0.9 53 408-460 1-62 (80)
116 TIGR00053 addiction module tox 47.7 10 0.00022 31.7 1.3 54 405-458 3-66 (89)
117 PF02219 MTHFR: Methylenetetra 47.6 3.1E+02 0.0068 27.8 12.2 171 230-431 10-205 (287)
118 cd01861 Rab6 Rab6 subfamily. 47.5 67 0.0014 28.0 6.5 67 302-371 88-159 (161)
119 TIGR03234 OH-pyruv-isom hydrox 47.5 1.3E+02 0.0028 29.3 9.1 85 301-388 82-180 (254)
120 smart00174 RHO Rho (Ras homolo 47.4 95 0.0021 27.6 7.6 63 309-373 93-171 (174)
121 PF01113 DapB_N: Dihydrodipico 47.2 31 0.00068 30.7 4.4 38 303-343 78-115 (124)
122 cd01879 FeoB Ferrous iron tran 46.8 63 0.0014 27.9 6.2 60 312-374 97-157 (158)
123 cd00945 Aldolase_Class_I Class 46.2 2.3E+02 0.005 25.7 10.5 104 316-422 48-168 (201)
124 TIGR00157 ribosome small subun 45.5 85 0.0018 31.2 7.6 61 303-367 54-116 (245)
125 PRK04213 GTP-binding protein; 45.4 1.2E+02 0.0025 28.1 8.1 61 310-374 124-192 (201)
126 COG3414 SgaB Phosphotransferas 45.4 5.2 0.00011 35.0 -0.8 52 389-443 17-68 (93)
127 cd03110 Fer4_NifH_child This p 45.4 57 0.0012 29.9 6.0 40 307-347 134-173 (179)
128 cd01860 Rab5_related Rab5-rela 45.1 83 0.0018 27.5 6.8 56 315-373 105-162 (163)
129 cd03174 DRE_TIM_metallolyase D 45.0 3E+02 0.0065 26.7 11.8 104 301-408 113-221 (265)
130 cd01863 Rab18 Rab18 subfamily. 44.9 1E+02 0.0022 27.0 7.2 55 314-371 104-159 (161)
131 cd04175 Rap1 Rap1 subgroup. T 44.8 65 0.0014 28.4 6.1 56 315-373 105-162 (164)
132 TIGR00126 deoC deoxyribose-pho 44.8 82 0.0018 31.3 7.3 47 316-363 117-163 (211)
133 cd04113 Rab4 Rab4 subfamily. 44.8 70 0.0015 28.0 6.3 65 304-371 90-159 (161)
134 cd04119 RJL RJL (RabJ-Like) su 44.7 1.2E+02 0.0026 26.3 7.7 56 315-373 109-166 (168)
135 TIGR03849 arch_ComA phosphosul 44.7 2.3E+02 0.005 29.0 10.6 94 305-409 43-154 (237)
136 cd00879 Sar1 Sar1 subfamily. 44.6 1.2E+02 0.0025 27.6 7.9 57 314-370 118-187 (190)
137 PF01297 TroA: Periplasmic sol 44.5 1.7E+02 0.0037 28.7 9.5 137 211-358 33-211 (256)
138 cd01854 YjeQ_engC YjeQ/EngC. 44.4 59 0.0013 33.1 6.4 61 304-367 97-157 (287)
139 cd01888 eIF2_gamma eIF2-gamma 44.1 80 0.0017 29.9 6.9 66 306-374 126-199 (203)
140 PRK04527 argininosuccinate syn 43.8 3.1E+02 0.0066 30.1 12.0 28 325-352 35-62 (400)
141 cd04171 SelB SelB subfamily. 43.7 96 0.0021 26.9 6.9 55 312-369 99-161 (164)
142 TIGR01125 MiaB-like tRNA modif 43.6 53 0.0012 35.2 6.3 78 267-347 234-317 (430)
143 cd01884 EF_Tu EF-Tu subfamily. 43.4 52 0.0011 31.5 5.6 43 304-346 105-153 (195)
144 PRK00049 elongation factor Tu; 43.2 77 0.0017 33.7 7.3 42 304-345 115-162 (396)
145 cd00878 Arf_Arl Arf (ADP-ribos 43.2 88 0.0019 27.3 6.6 56 314-369 98-155 (158)
146 PLN02881 tetrahydrofolylpolygl 43.1 1.1E+02 0.0025 34.4 8.9 98 218-352 145-244 (530)
147 PRK05301 pyrroloquinoline quin 43.0 77 0.0017 33.1 7.2 50 302-352 140-189 (378)
148 cd04144 Ras2 Ras2 subfamily. 43.0 1.3E+02 0.0028 27.8 8.0 71 315-388 105-178 (190)
149 cd01881 Obg_like The Obg-like 42.9 71 0.0015 28.1 6.0 54 315-371 119-174 (176)
150 TIGR00437 feoB ferrous iron tr 42.3 66 0.0014 36.4 7.0 59 312-373 95-154 (591)
151 KOG1602 Cis-prenyltransferase 42.3 2.5E+02 0.0054 29.4 10.4 149 251-421 29-200 (271)
152 cd06268 PBP1_ABC_transporter_L 41.9 2.9E+02 0.0064 25.7 11.6 120 307-431 81-221 (298)
153 cd04501 SGNH_hydrolase_like_4 41.7 1.2E+02 0.0026 27.4 7.5 60 295-357 78-150 (183)
154 cd01870 RhoA_like RhoA-like su 41.7 1.9E+02 0.0041 25.7 8.6 56 315-372 104-173 (175)
155 TIGR00676 fadh2 5,10-methylene 41.7 3.9E+02 0.0085 27.1 13.1 156 243-430 13-189 (272)
156 TIGR03822 AblA_like_2 lysine-2 41.7 86 0.0019 32.6 7.2 52 303-354 214-267 (321)
157 TIGR03679 arCOG00187 arCOG0018 41.4 1.7E+02 0.0037 28.7 8.9 126 315-450 20-158 (218)
158 cd01886 EF-G Elongation factor 41.4 58 0.0013 33.0 5.8 24 306-329 106-129 (270)
159 cd04101 RabL4 RabL4 (Rab-like4 41.3 74 0.0016 27.9 5.8 55 315-372 106-162 (164)
160 cd04123 Rab21 Rab21 subfamily. 41.2 1.4E+02 0.003 25.7 7.5 56 313-371 102-159 (162)
161 cd04170 EF-G_bact Elongation f 40.6 66 0.0014 31.8 6.0 42 306-347 106-147 (268)
162 cd02911 arch_FMN Archeal FMN-b 40.3 3.1E+02 0.0066 27.4 10.6 68 304-375 60-137 (233)
163 cd01020 TroA_b Metal binding p 40.3 2.5E+02 0.0055 28.0 10.1 36 287-322 122-159 (264)
164 TIGR03594 GTPase_EngA ribosome 40.3 1.2E+02 0.0027 31.8 8.3 63 309-374 276-344 (429)
165 cd04120 Rab12 Rab12 subfamily. 40.0 1.7E+02 0.0037 28.1 8.6 56 315-373 104-162 (202)
166 PRK08208 coproporphyrinogen II 40.0 73 0.0016 34.3 6.6 79 268-350 144-226 (430)
167 cd01857 HSR1_MMR1 HSR1/MMR1. 39.9 86 0.0019 27.9 6.1 33 315-347 41-73 (141)
168 TIGR02729 Obg_CgtA Obg family 39.5 1.7E+02 0.0037 30.6 9.0 56 315-373 272-328 (329)
169 smart00729 Elp3 Elongator prot 39.5 1.3E+02 0.0027 27.0 7.1 64 303-366 136-201 (216)
170 cd04133 Rop_like Rop subfamily 39.1 1.3E+02 0.0028 28.2 7.4 72 302-375 88-174 (176)
171 PF07005 DUF1537: Protein of u 38.9 26 0.00056 33.8 2.7 69 293-374 9-77 (223)
172 PRK14334 (dimethylallyl)adenos 38.4 67 0.0015 34.7 6.1 94 252-349 222-321 (440)
173 cd01864 Rab19 Rab19 subfamily. 38.4 1.3E+02 0.0028 26.6 7.0 66 304-371 96-163 (165)
174 cd01019 ZnuA Zinc binding prot 37.8 2.4E+02 0.0051 28.7 9.6 68 288-356 149-238 (286)
175 PRK13361 molybdenum cofactor b 37.8 99 0.0021 31.9 7.0 55 303-358 140-195 (329)
176 cd01892 Miro2 Miro2 subfamily. 37.7 75 0.0016 28.9 5.5 58 315-374 107-166 (169)
177 cd01874 Cdc42 Cdc42 subfamily. 37.4 1.4E+02 0.0031 27.3 7.3 55 316-372 105-173 (175)
178 TIGR00089 RNA modification enz 37.2 73 0.0016 34.0 6.1 77 268-347 239-321 (429)
179 PRK01060 endonuclease IV; Prov 37.2 1.4E+02 0.003 29.4 7.7 95 290-386 76-180 (281)
180 PRK12736 elongation factor Tu; 37.1 1.6E+02 0.0035 31.3 8.5 42 305-346 116-163 (394)
181 cd04118 Rab24 Rab24 subfamily. 36.9 1.4E+02 0.003 27.3 7.2 69 303-374 90-166 (193)
182 PF00682 HMGL-like: HMGL-like 36.7 1.2E+02 0.0026 29.3 7.0 107 298-408 103-212 (237)
183 PRK05506 bifunctional sulfate 36.6 63 0.0014 36.5 5.7 41 306-346 146-193 (632)
184 cd02810 DHOD_DHPD_FMN Dihydroo 36.2 4.5E+02 0.0098 26.2 15.1 103 301-409 81-196 (289)
185 cd01865 Rab3 Rab3 subfamily. 35.8 1.4E+02 0.0031 26.5 6.9 57 315-374 105-163 (165)
186 COG1082 IolE Sugar phosphate i 35.7 2.3E+02 0.0051 27.3 8.8 60 293-353 74-146 (274)
187 PRK02412 aroD 3-dehydroquinate 35.2 2.9E+02 0.0063 27.8 9.6 99 303-404 122-222 (253)
188 cd01895 EngA2 EngA2 subfamily. 35.1 1.6E+02 0.0034 25.4 6.9 59 310-371 107-172 (174)
189 PRK14336 (dimethylallyl)adenos 35.0 1.1E+02 0.0024 33.0 7.0 130 215-348 157-307 (418)
190 cd01878 HflX HflX subfamily. 35.0 1.6E+02 0.0035 27.3 7.3 59 307-371 144-202 (204)
191 cd04110 Rab35 Rab35 subfamily. 34.9 1.2E+02 0.0027 28.3 6.5 56 316-374 110-167 (199)
192 PRK05799 coproporphyrinogen II 34.7 89 0.0019 32.6 6.1 79 267-349 101-183 (374)
193 TIGR02026 BchE magnesium-proto 34.6 77 0.0017 34.8 5.9 80 268-351 290-372 (497)
194 TIGR01579 MiaB-like-C MiaB-lik 34.6 99 0.0021 32.9 6.5 77 268-347 238-320 (414)
195 cd04732 HisA HisA. Phosphorib 34.5 2E+02 0.0044 27.6 8.1 95 312-412 116-222 (234)
196 PRK00454 engB GTP-binding prot 34.5 1.3E+02 0.0029 27.3 6.6 59 312-373 131-193 (196)
197 PLN02540 methylenetetrahydrofo 34.4 7.6E+02 0.016 28.4 13.6 158 241-429 11-200 (565)
198 PRK13758 anaerobic sulfatase-m 34.3 84 0.0018 32.5 5.8 49 302-351 143-191 (370)
199 cd07944 DRE_TIM_HOA_like 4-hyd 34.3 1.3E+02 0.0029 30.4 7.1 54 302-355 108-161 (266)
200 TIGR02666 moaA molybdenum cofa 34.2 1.3E+02 0.0028 30.9 7.1 50 303-353 139-189 (334)
201 COG0274 DeoC Deoxyribose-phosp 34.2 2E+02 0.0043 29.5 8.1 71 294-364 99-172 (228)
202 cd04129 Rho2 Rho2 subfamily. 33.9 1.9E+02 0.0041 26.7 7.5 56 316-373 105-172 (187)
203 PLN03110 Rab GTPase; Provision 33.8 1.4E+02 0.003 28.6 6.8 56 315-373 116-173 (216)
204 cd04176 Rap2 Rap2 subgroup. T 33.7 1.7E+02 0.0036 25.7 6.9 65 304-371 93-160 (163)
205 TIGR03680 eif2g_arch translati 33.7 1.4E+02 0.0031 31.8 7.5 68 304-374 121-196 (406)
206 cd06341 PBP1_ABC_ligand_bindin 33.6 4.9E+02 0.011 25.9 12.1 119 310-432 84-220 (341)
207 PRK08195 4-hyroxy-2-oxovalerat 33.4 1.5E+02 0.0032 31.3 7.5 52 304-355 116-167 (337)
208 cd01889 SelB_euk SelB subfamil 33.3 1.7E+02 0.0037 27.0 7.2 59 312-373 116-185 (192)
209 cd00502 DHQase_I Type I 3-dehy 33.3 3.9E+02 0.0085 26.0 10.0 94 262-366 56-163 (225)
210 cd04160 Arfrp1 Arfrp1 subfamil 33.0 1.3E+02 0.0029 26.3 6.2 15 314-328 105-119 (167)
211 PRK09249 coproporphyrinogen II 32.9 1.2E+02 0.0026 32.8 7.0 81 267-351 153-237 (453)
212 cd07939 DRE_TIM_NifV Streptomy 32.8 1.9E+02 0.0041 28.8 7.8 106 299-409 106-214 (259)
213 cd01537 PBP1_Repressors_Sugar_ 32.8 3.9E+02 0.0085 24.5 12.5 115 309-424 72-202 (264)
214 TIGR02494 PFLE_PFLC glycyl-rad 32.4 1.5E+02 0.0032 29.7 7.1 46 305-351 203-253 (295)
215 TIGR02717 AcCoA-syn-alpha acet 32.4 2.1E+02 0.0045 31.2 8.6 43 333-375 76-119 (447)
216 PF04312 DUF460: Protein of un 32.4 1.3E+02 0.0027 28.7 6.0 67 255-346 35-101 (138)
217 TIGR01361 DAHP_synth_Bsub phos 32.3 2E+02 0.0044 29.2 8.1 94 308-406 124-226 (260)
218 PRK08599 coproporphyrinogen II 32.2 1E+02 0.0022 32.3 6.1 78 267-348 102-183 (377)
219 COG0012 Predicted GTPase, prob 32.1 1.2E+02 0.0027 32.9 6.7 80 315-407 205-289 (372)
220 PRK09426 methylmalonyl-CoA mut 31.9 3.9E+02 0.0084 31.4 11.1 121 297-426 560-688 (714)
221 TIGR02329 propionate_PrpR prop 31.9 1.8E+02 0.0039 32.6 8.2 77 302-397 105-182 (526)
222 PRK00507 deoxyribose-phosphate 31.9 1.9E+02 0.0041 28.8 7.6 32 330-361 134-165 (221)
223 cd00880 Era_like Era (E. coli 31.7 1.3E+02 0.0029 24.9 5.7 61 308-371 96-161 (163)
224 PRK12288 GTPase RsgA; Reviewed 31.6 1.4E+02 0.003 31.6 7.0 63 304-369 138-203 (347)
225 PLN02540 methylenetetrahydrofo 31.6 94 0.002 35.4 6.0 114 219-346 160-285 (565)
226 TIGR02495 NrdG2 anaerobic ribo 31.5 1.1E+02 0.0023 28.5 5.5 41 304-345 141-183 (191)
227 COG4963 CpaE Flp pilus assembl 31.5 1.9E+02 0.0042 31.3 8.0 95 293-403 249-344 (366)
228 PRK12299 obgE GTPase CgtA; Rev 31.5 2.5E+02 0.0054 29.5 8.8 58 315-375 270-329 (335)
229 cd04143 Rhes_like Rhes_like su 31.5 1.6E+02 0.0034 29.4 7.0 57 315-374 112-171 (247)
230 cd04509 PBP1_ABC_transporter_G 31.3 4.4E+02 0.0095 24.6 10.3 116 312-431 87-224 (299)
231 PF00764 Arginosuc_synth: Argi 31.1 1.5E+02 0.0033 32.2 7.3 111 315-438 21-171 (388)
232 PLN03127 Elongation factor Tu; 31.1 2.1E+02 0.0046 31.3 8.4 30 304-333 164-194 (447)
233 TIGR01287 nifH nitrogenase iro 31.0 5.2E+02 0.011 25.5 10.5 87 301-402 157-246 (275)
234 cd04169 RF3 RF3 subfamily. Pe 30.9 1.2E+02 0.0026 30.6 6.2 22 307-328 114-135 (267)
235 cd01852 AIG1 AIG1 (avrRpt2-ind 30.9 3.6E+02 0.0078 25.2 9.0 56 317-375 117-185 (196)
236 TIGR01278 DPOR_BchB light-inde 30.8 4E+02 0.0086 29.6 10.6 140 193-347 22-190 (511)
237 PRK08227 autoinducer 2 aldolas 30.6 4.4E+02 0.0095 27.3 10.1 97 301-408 125-225 (264)
238 TIGR03217 4OH_2_O_val_ald 4-hy 30.5 1.7E+02 0.0038 30.8 7.4 98 304-407 115-218 (333)
239 cd04116 Rab9 Rab9 subfamily. 30.5 1.6E+02 0.0035 26.1 6.3 55 315-371 113-168 (170)
240 PRK15467 ethanolamine utilizat 30.5 87 0.0019 28.5 4.7 59 315-375 90-148 (158)
241 PRK00048 dihydrodipicolinate r 30.5 1.7E+02 0.0038 29.2 7.1 95 305-422 73-168 (257)
242 PF10662 PduV-EutP: Ethanolami 30.4 1.3E+02 0.0028 28.3 5.9 55 313-369 86-141 (143)
243 cd04148 RGK RGK subfamily. Th 30.4 2.8E+02 0.0061 26.7 8.3 93 315-421 105-200 (221)
244 cd04146 RERG_RasL11_like RERG/ 30.3 2.5E+02 0.0053 24.8 7.4 67 304-372 92-162 (165)
245 cd04122 Rab14 Rab14 subfamily. 30.2 1.9E+02 0.0042 25.6 6.7 58 311-371 102-161 (166)
246 PRK04165 acetyl-CoA decarbonyl 30.2 1.5E+02 0.0033 32.9 7.1 46 303-353 188-233 (450)
247 PF01180 DHO_dh: Dihydroorotat 30.2 1.4E+02 0.0031 30.2 6.6 102 302-407 81-194 (295)
248 cd01898 Obg Obg subfamily. Th 30.2 1.6E+02 0.0034 25.9 6.2 54 315-371 113-168 (170)
249 TIGR00381 cdhD CO dehydrogenas 30.1 2.9E+02 0.0064 30.3 9.1 114 304-421 228-371 (389)
250 PRK05234 mgsA methylglyoxal sy 30.0 3.3E+02 0.0072 25.4 8.4 45 331-387 92-136 (142)
251 PRK08228 L(+)-tartrate dehydra 30.0 85 0.0019 31.5 4.8 137 147-329 13-176 (204)
252 PRK14862 rimO ribosomal protei 29.9 1.1E+02 0.0025 33.0 6.1 78 268-349 247-330 (440)
253 PRK05283 deoxyribose-phosphate 29.8 1.9E+02 0.0042 29.8 7.4 45 316-360 131-175 (257)
254 PRK00093 GTP-binding protein D 29.7 1.9E+02 0.0042 30.5 7.7 63 309-374 277-344 (435)
255 PRK00164 moaA molybdenum cofac 29.5 1.5E+02 0.0032 30.4 6.6 50 302-352 143-193 (331)
256 CHL00071 tufA elongation facto 29.4 1E+02 0.0023 32.9 5.7 43 304-346 115-163 (409)
257 cd01849 YlqF_related_GTPase Yl 29.3 3E+02 0.0065 24.8 7.9 59 311-372 24-83 (155)
258 PRK03670 competence damage-ind 29.3 3.3E+02 0.0071 27.8 8.9 76 311-419 28-103 (252)
259 cd00877 Ran Ran (Ras-related n 29.3 1.7E+02 0.0038 26.3 6.4 57 316-375 104-160 (166)
260 cd04152 Arl4_Arl7 Arl4/Arl7 su 29.2 3E+02 0.0064 25.3 8.0 61 313-374 106-170 (183)
261 PF11720 Inhibitor_I78: Peptid 29.1 51 0.0011 26.4 2.5 28 470-501 30-57 (60)
262 cd01829 SGNH_hydrolase_peri2 S 28.9 4.5E+02 0.0098 24.0 9.3 44 303-347 95-145 (200)
263 cd04154 Arl2 Arl2 subfamily. 28.9 1.5E+02 0.0033 26.6 5.9 53 315-370 114-171 (173)
264 PF07755 DUF1611: Protein of u 28.8 76 0.0017 33.4 4.4 121 174-359 171-297 (301)
265 TIGR00032 argG argininosuccina 28.7 3.8E+02 0.0082 29.2 9.7 21 331-351 37-57 (394)
266 cd01821 Rhamnogalacturan_acety 28.6 3E+02 0.0066 25.4 8.0 52 293-347 87-148 (198)
267 PRK02842 light-independent pro 28.5 78 0.0017 34.1 4.6 22 192-219 31-52 (427)
268 cd01876 YihA_EngB The YihA (En 28.5 2.6E+02 0.0057 23.8 7.1 61 309-371 103-168 (170)
269 cd04137 RheB Rheb (Ras Homolog 28.5 2.1E+02 0.0045 25.7 6.8 59 314-375 104-164 (180)
270 COG1456 CdhE CO dehydrogenase/ 28.4 2.4E+02 0.0052 31.1 8.0 64 304-371 193-256 (467)
271 PRK15424 propionate catabolism 28.3 2.6E+02 0.0057 31.6 8.7 79 302-399 115-194 (538)
272 PRK15116 sulfur acceptor prote 28.2 2.2E+02 0.0048 29.3 7.6 110 240-404 79-192 (268)
273 PRK07189 malonate decarboxylas 28.1 3.3E+02 0.0072 28.7 8.9 88 193-324 64-153 (301)
274 cd04125 RabA_like RabA-like su 28.0 2.2E+02 0.0049 26.0 7.0 69 302-373 88-165 (188)
275 PRK05628 coproporphyrinogen II 28.0 1.5E+02 0.0032 31.2 6.4 79 267-349 110-192 (375)
276 cd00882 Ras_like_GTPase Ras-li 27.6 2.1E+02 0.0045 23.2 6.0 61 306-369 92-155 (157)
277 COG0825 AccA Acetyl-CoA carbox 27.4 2E+02 0.0043 30.7 7.0 77 289-371 127-215 (317)
278 TIGR01969 minD_arch cell divis 27.4 2.1E+02 0.0045 27.3 6.8 124 228-404 108-234 (251)
279 COG4822 CbiK Cobalamin biosynt 27.4 81 0.0018 32.4 4.1 84 210-358 144-238 (265)
280 PRK05660 HemN family oxidoredu 27.3 2.2E+02 0.0048 30.1 7.6 79 267-349 109-191 (378)
281 PRK08446 coproporphyrinogen II 27.1 6E+02 0.013 26.6 10.7 70 275-347 107-180 (350)
282 PF01171 ATP_bind_3: PP-loop f 27.0 1.5E+02 0.0033 27.6 5.8 87 315-404 26-122 (182)
283 PRK07226 fructose-bisphosphate 26.9 5E+02 0.011 26.1 9.7 36 312-347 135-175 (267)
284 TIGR01499 folC folylpolyglutam 26.9 3.4E+02 0.0074 28.5 8.9 39 217-264 97-137 (397)
285 TIGR01019 sucCoAalpha succinyl 26.9 2.8E+02 0.006 28.8 8.0 63 307-375 21-112 (286)
286 CHL00198 accA acetyl-CoA carbo 26.8 3E+02 0.0066 29.4 8.4 81 261-362 112-207 (322)
287 cd04109 Rab28 Rab28 subfamily. 26.8 2.5E+02 0.0055 26.6 7.3 56 316-374 109-166 (215)
288 cd04164 trmE TrmE (MnmE, ThdF, 26.7 2.1E+02 0.0046 24.3 6.2 51 314-372 105-155 (157)
289 cd00739 DHPS DHPS subgroup of 26.6 6.8E+02 0.015 25.4 10.6 125 301-440 60-212 (257)
290 cd04134 Rho3 Rho3 subfamily. 26.4 3.1E+02 0.0068 25.3 7.6 57 316-374 104-174 (189)
291 TIGR00735 hisF imidazoleglycer 26.4 4E+02 0.0087 26.5 8.9 78 325-407 148-227 (254)
292 PRK13306 ulaD 3-keto-L-gulonat 26.4 1.9E+02 0.0042 28.5 6.5 118 296-424 30-164 (216)
293 cd04168 TetM_like Tet(M)-like 26.3 1.5E+02 0.0032 29.4 5.7 41 304-347 104-147 (237)
294 cd01862 Rab7 Rab7 subfamily. 26.2 3.2E+02 0.007 23.9 7.4 57 316-374 109-167 (172)
295 PRK00741 prfC peptide chain re 26.1 1.4E+02 0.003 33.4 6.1 25 305-329 120-144 (526)
296 PRK12297 obgE GTPase CgtA; Rev 26.0 2.7E+02 0.0058 30.5 8.1 55 315-375 273-328 (424)
297 TIGR02668 moaA_archaeal probab 26.0 2.1E+02 0.0046 28.8 6.9 51 303-354 134-185 (302)
298 KOG1144 Translation initiation 26.0 68 0.0015 38.1 3.7 54 242-325 548-601 (1064)
299 TIGR01037 pyrD_sub1_fam dihydr 25.9 7E+02 0.015 25.2 18.9 92 313-409 87-189 (300)
300 cd07062 Peptidase_S66_mccF_lik 25.8 1.5E+02 0.0032 30.7 5.8 86 304-394 19-111 (308)
301 PRK14338 (dimethylallyl)adenos 25.8 2.1E+02 0.0045 31.3 7.2 82 268-352 255-342 (459)
302 cd04140 ARHI_like ARHI subfami 25.8 2.5E+02 0.0055 24.9 6.7 54 315-371 107-162 (165)
303 cd04130 Wrch_1 Wrch-1 subfamil 25.6 4E+02 0.0086 23.9 8.0 55 315-371 103-171 (173)
304 COG0137 ArgG Argininosuccinate 25.6 5.5E+02 0.012 28.4 10.2 156 310-479 22-241 (403)
305 PLN02913 dihydrofolate synthet 25.3 3.3E+02 0.0073 30.2 8.8 98 217-347 160-259 (510)
306 TIGR02127 pyrF_sub2 orotidine 25.2 5.9E+02 0.013 26.1 9.9 116 300-419 70-207 (261)
307 PRK14331 (dimethylallyl)adenos 25.1 1.5E+02 0.0033 31.9 6.0 77 268-347 245-327 (437)
308 cd07937 DRE_TIM_PC_TC_5S Pyruv 25.1 2.6E+02 0.0057 28.3 7.4 100 302-407 117-222 (275)
309 PRK07206 hypothetical protein; 25.0 5.5E+02 0.012 26.9 10.0 118 309-437 18-156 (416)
310 TIGR00126 deoC deoxyribose-pho 24.9 1.5E+02 0.0033 29.4 5.5 123 327-472 13-154 (211)
311 cd00958 DhnA Class I fructose- 24.8 4.8E+02 0.01 25.3 8.9 117 304-426 77-210 (235)
312 PF00071 Ras: Ras family; Int 24.7 2.6E+02 0.0056 24.4 6.5 67 304-373 92-160 (162)
313 TIGR00538 hemN oxygen-independ 24.7 2E+02 0.0043 31.2 6.8 80 267-350 153-236 (455)
314 PRK07535 methyltetrahydrofolat 24.3 4.3E+02 0.0094 26.9 8.8 116 305-420 105-239 (261)
315 PRK13762 tRNA-modifying enzyme 24.3 1.6E+02 0.0036 30.7 5.9 49 301-349 206-254 (322)
316 cd04155 Arl3 Arl3 subfamily. 24.2 1.9E+02 0.0042 25.6 5.7 56 312-370 111-171 (173)
317 PF07485 DUF1529: Domain of Un 24.2 1.7E+02 0.0037 27.0 5.3 45 330-374 66-121 (123)
318 PRK11864 2-ketoisovalerate fer 24.2 8E+02 0.017 25.9 10.9 170 164-372 39-229 (300)
319 COG1369 POP5 RNase P/RNase MRP 24.2 62 0.0013 30.2 2.5 42 133-190 77-118 (124)
320 COG1038 PycA Pyruvate carboxyl 24.0 1.1E+02 0.0025 36.7 5.0 111 306-424 123-274 (1149)
321 cd01887 IF2_eIF5B IF2/eIF5B (i 23.9 3.1E+02 0.0067 23.9 6.8 62 309-373 95-165 (168)
322 cd01871 Rac1_like Rac1-like su 23.9 3.3E+02 0.0072 24.9 7.3 54 316-371 105-172 (174)
323 PF07555 NAGidase: beta-N-acet 23.6 4.2E+02 0.0092 27.9 8.7 51 302-352 55-111 (306)
324 COG1228 HutI Imidazolonepropio 23.6 3.1E+02 0.0066 29.8 7.9 178 219-432 121-312 (406)
325 TIGR01394 TypA_BipA GTP-bindin 23.5 2.8E+02 0.0061 31.6 7.9 42 304-345 104-148 (594)
326 PTZ00099 rab6; Provisional 23.4 3.4E+02 0.0073 25.4 7.3 70 303-375 69-143 (176)
327 PRK14339 (dimethylallyl)adenos 23.4 2E+02 0.0043 31.0 6.5 92 252-347 215-312 (420)
328 cd01137 PsaA Metal binding pro 23.3 3.8E+02 0.0083 27.3 8.2 24 288-311 145-168 (287)
329 PRK10076 pyruvate formate lyas 23.3 2.9E+02 0.0064 27.2 7.2 43 310-352 121-165 (213)
330 PRK10660 tilS tRNA(Ile)-lysidi 23.2 1.8E+02 0.0039 31.7 6.2 51 315-366 43-96 (436)
331 PRK02083 imidazole glycerol ph 23.2 4.3E+02 0.0092 26.2 8.3 78 329-411 150-229 (253)
332 TIGR02924 ICDH_alpha isocitrat 23.0 5E+02 0.011 29.3 9.5 140 213-385 198-350 (473)
333 PLN03108 Rab family protein; P 23.0 3.1E+02 0.0068 26.0 7.1 47 315-364 110-158 (210)
334 COG1533 SplB DNA repair photol 22.8 1.7E+02 0.0038 30.5 5.7 52 308-359 174-226 (297)
335 cd04730 NPD_like 2-Nitropropan 22.7 4.6E+02 0.01 25.1 8.3 29 323-351 58-86 (236)
336 cd04157 Arl6 Arl6 subfamily. 22.7 2.1E+02 0.0046 24.8 5.5 57 313-370 101-160 (162)
337 cd01875 RhoG RhoG subfamily. 22.7 5.6E+02 0.012 23.8 8.6 58 315-374 106-177 (191)
338 COG0276 HemH Protoheme ferro-l 22.7 3E+02 0.0064 29.4 7.4 69 304-372 244-317 (320)
339 TIGR00677 fadh2_euk methylenet 22.7 8.5E+02 0.018 25.0 13.7 157 241-429 12-192 (281)
340 cd06360 PBP1_alkylbenzenes_lik 22.4 7.5E+02 0.016 24.3 10.5 99 328-430 116-221 (336)
341 cd06323 PBP1_ribose_binding Pe 22.4 6.4E+02 0.014 23.5 12.4 120 309-430 73-211 (268)
342 cd03768 SR_ResInv Serine Recom 22.4 2.8E+02 0.0061 23.8 6.2 53 299-355 42-94 (126)
343 TIGR00487 IF-2 translation ini 22.3 1.7E+02 0.0037 33.3 6.0 63 308-371 179-247 (587)
344 TIGR00737 nifR3_yhdG putative 22.1 8E+02 0.017 25.2 10.3 96 315-415 130-228 (319)
345 cd04739 DHOD_like Dihydroorota 22.1 3.8E+02 0.0083 27.9 8.1 44 301-347 83-127 (325)
346 PRK05286 dihydroorotate dehydr 22.1 4.5E+02 0.0097 27.6 8.6 37 317-355 212-248 (344)
347 PRK11253 ldcA L,D-carboxypepti 22.1 1.7E+02 0.0037 30.4 5.5 61 304-369 18-86 (305)
348 PRK05660 HemN family oxidoredu 22.1 6.2E+02 0.013 26.8 9.7 46 330-375 141-186 (378)
349 PRK07226 fructose-bisphosphate 22.1 5.7E+02 0.012 25.7 9.1 13 362-374 124-136 (267)
350 cd07025 Peptidase_S66 LD-Carbo 21.9 2.1E+02 0.0046 29.1 6.1 96 304-406 15-122 (282)
351 PRK12735 elongation factor Tu; 21.9 3.8E+02 0.0082 28.6 8.1 42 304-345 115-162 (396)
352 cd04121 Rab40 Rab40 subfamily. 21.8 3.3E+02 0.0071 25.8 7.0 55 316-373 110-166 (189)
353 PRK04804 minC septum formation 21.8 2.3E+02 0.005 28.1 6.2 51 294-348 24-76 (221)
354 PTZ00132 GTP-binding nuclear p 21.8 6.2E+02 0.014 23.8 8.9 56 316-374 113-168 (215)
355 COG4195 Phage-related replicat 21.8 69 0.0015 32.1 2.4 40 211-263 119-158 (208)
356 cd01018 ZntC Metal binding pro 21.6 8.1E+02 0.018 24.4 10.5 109 288-413 140-251 (266)
357 PRK12595 bifunctional 3-deoxy- 21.6 6.6E+02 0.014 26.9 9.9 95 308-407 217-320 (360)
358 PRK09518 bifunctional cytidyla 21.2 2.5E+02 0.0054 32.5 7.0 67 309-375 554-622 (712)
359 cd07943 DRE_TIM_HOA 4-hydroxy- 21.1 3.2E+02 0.007 27.3 7.1 53 304-356 113-165 (263)
360 PRK13575 3-dehydroquinate dehy 21.1 5.4E+02 0.012 25.9 8.6 99 302-404 111-211 (238)
361 cd01858 NGP_1 NGP-1. Autoanti 21.1 4.5E+02 0.0097 23.6 7.4 67 304-373 28-94 (157)
362 cd02809 alpha_hydroxyacid_oxid 20.8 4.1E+02 0.009 27.1 7.9 94 309-415 164-262 (299)
363 TIGR00539 hemN_rel putative ox 20.8 8.8E+02 0.019 25.3 10.5 50 329-378 133-182 (360)
364 PRK14834 undecaprenyl pyrophos 20.7 9E+02 0.019 24.8 10.2 102 295-399 37-157 (249)
365 PRK00339 minC septum formation 20.7 3.4E+02 0.0074 27.6 7.2 58 292-352 29-89 (249)
366 COG2313 IndA Uncharacterized e 20.6 4.6E+02 0.01 27.7 8.1 105 211-346 107-226 (310)
367 cd04159 Arl10_like Arl10-like 20.5 3.6E+02 0.0078 22.7 6.4 21 314-334 99-119 (159)
368 cd04117 Rab15 Rab15 subfamily. 20.4 4.6E+02 0.01 23.3 7.3 54 315-371 104-159 (161)
369 TIGR03164 UHCUDC OHCU decarbox 20.4 1E+02 0.0023 29.2 3.3 31 290-326 88-118 (157)
370 cd04108 Rab36_Rab34 Rab34/Rab3 20.4 5E+02 0.011 23.6 7.7 70 302-374 88-165 (170)
371 PLN00023 GTP-binding protein; 20.3 2E+02 0.0042 30.9 5.5 46 302-347 122-190 (334)
372 PRK08446 coproporphyrinogen II 20.2 2.4E+02 0.0053 29.5 6.2 97 322-428 126-225 (350)
373 PRK11572 copper homeostasis pr 20.2 8.4E+02 0.018 25.2 9.8 89 315-407 50-146 (248)
374 PRK09432 metF 5,10-methylenete 20.2 73 0.0016 33.0 2.4 90 226-320 177-272 (296)
375 smart00422 HTH_MERR helix_turn 20.2 60 0.0013 25.3 1.4 18 49-66 32-49 (70)
376 COG1105 FruK Fructose-1-phosph 20.2 3.1E+02 0.0068 29.1 6.9 98 227-364 128-229 (310)
377 COG2866 Predicted carboxypepti 20.1 47 0.001 35.6 1.0 82 2-109 146-240 (374)
378 PLN02520 bifunctional 3-dehydr 20.1 3.5E+02 0.0076 30.3 7.7 122 264-403 79-216 (529)
379 PHA02085 hypothetical protein 20.1 30 0.00066 30.0 -0.4 24 201-225 9-32 (87)
380 COG0535 Predicted Fe-S oxidore 20.1 2.6E+02 0.0057 27.8 6.2 48 301-349 143-190 (347)
No 1
>PLN02759 Formate--tetrahydrofolate ligase
Probab=100.00 E-value=8.8e-235 Score=1841.66 Aligned_cols=502 Identities=87% Similarity=1.345 Sum_probs=496.8
Q ss_pred CccccccccchhhHHHHHHhHHHHHHHhhhhcccCcChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHH
Q 010734 1 MDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPE 80 (502)
Q Consensus 1 me~iNLHfTGD~hAIt~A~NLlaA~idn~i~~~n~~~~~~~~~~l~p~~~~g~r~~~~~~~~r~~~l~~~~~~p~~~~~~ 80 (502)
||||||||||||||||||||||+|+|||||||+|+|+|+.||+||||..++|+|+|++.||||||||||+|+||++||+|
T Consensus 135 me~iNLHfTGD~hAItaA~NLlaA~idn~i~~~n~~~~~~l~~~l~p~~~~~~r~~~~~~~~rl~~l~i~~~~p~~lt~~ 214 (637)
T PLN02759 135 MEEFNLHLTGDIHAITAANNLLAAAIDTRVFHEATQSDKALFNRLCPANKEGKRSFAAVMFRRLKKLGISKTDPDELTPE 214 (637)
T ss_pred HhhhcccccchHHHHHHHHHHHHHHHHHHHhhccccchhhhhhccccccccccccccHHHHHHHHhhccCcCCccccCHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhccCCCCCCceeeeecccccccccceeEeccCCCCCCcceecceeEeehhhHHHHHHccCCHHHHHHHhcCcEEee
Q 010734 81 EINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGN 160 (502)
Q Consensus 81 ~~~~~~~l~iDp~~I~w~Rv~D~NDR~LR~I~iglg~~~~G~~re~gFdIT~ASEiMAIl~La~~l~Dlk~Rl~~ivv~~ 160 (502)
|+++|++|+|||++|+||||||||||+||+|+||+|++.||+|||+|||||||||||||||||+|++|||+|||||||||
T Consensus 215 e~~~~~~L~IDp~~I~w~RvlD~NDR~LR~I~vGlgg~~~G~~Re~gFdITvASEiMAILcLa~dl~Dlk~Rlg~ivvg~ 294 (637)
T PLN02759 215 ERKKFARLDIDPASITWRRVMDVNDRFLRKITVGQGPEEKGMTRETGFDITVASEIMAVLALTTSLADMRERLGKMVIGN 294 (637)
T ss_pred HhhhhhccCcCcceeEEEeeccccchhhhceeeCcCCCCCCCcccCCceeeHHHHHHHHHHHcCCHHHHHHHHhCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeecccccchhHHHHhhhccCcCcceeecCceeEEcccccchhcccCchHHHHHHHHHhcCCCCeEEeeccccc
Q 010734 161 SKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGA 240 (502)
Q Consensus 161 ~~~g~pvta~DL~~~GAm~~lLkdAi~PNLvQTlEgtPa~vHgGPFANIAhG~nSviAtk~alkla~~~dyvVTEAGFga 240 (502)
|+||+||||+||+++||||+|||||||||||||+||||||||||||||||||||||||||+||||+|++|||||||||||
T Consensus 295 ~~~g~pVta~DL~~~GAmt~LLkDAikPNLvQTlEgtPa~vHgGPFANIAhG~nSviAtk~ALkla~~~dyvVTEAGFGa 374 (637)
T PLN02759 295 SKAGEPVTADDLGVGGALTVLMKDAIHPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADQIALKLVGPGGFVVTEAGFGA 374 (637)
T ss_pred cCCCCceeHHHcCchHhHHHHHHhhhCccceeecCCCceEEecCCcccccccchHHHHHHHHHhhcCCCCeEEEecccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred cccchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcEE
Q 010734 241 DIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVV 320 (502)
Q Consensus 241 DlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvV 320 (502)
|||||||||||||.+|++|||+||||||||||||||+++..+|+|||++|.+||+++|++||+||.|||||+++||+|||
T Consensus 375 DlGaEKF~dIkcR~~gl~P~a~VlVaTvRALK~hGG~~~~~pg~~l~~~l~~enl~al~~G~~NL~~Hi~n~~~fg~pvV 454 (637)
T PLN02759 375 DIGTEKFMNIKCRYSGLKPQCAVIVATVRALKMHGGGPAVVAGKPLDHAYTTENVELVEAGCVNLARHIENTKSYGVNVV 454 (637)
T ss_pred CCchhheecccccccCCCCCEEEEEeehHHHHhcCCCCcccCCccchhhhcccCHHHHHhhhhhHHHHHHHHHHcCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCCCCHHHHHHHHHH-
Q 010734 321 VAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR- 399 (502)
Q Consensus 321 VAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~- 399 (502)
||||+|++||++||++|+++|+++|+.++++|+||++||+|++|||++|+++|++++++|+|||++++||+|||++||+
T Consensus 455 VaiN~F~~Dt~~Ei~~v~~~~~~~ga~~~~~~~~wa~GGeGa~eLA~~Vv~a~e~~~s~fk~LYd~~~sI~eKIetIAke 534 (637)
T PLN02759 455 VAINMFATDTEAELEAVRQAALAAGAFDAVLCTHHAHGGKGAVDLGEAVQKACEGNSQPFKFLYPLDISIKEKIEAIAKE 534 (637)
T ss_pred EEecCCCCCCHHHHHHHHHHHHHcCCCcEEEechhhcccHHHHHHHHHHHHHHhcCCCCccccCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999545999999999999999999999999986467899999999999999999999
Q ss_pred HhCCCceeeCHHHHHHHHHHHHCCCCCCCeeEeecCCCCCCCCCCCCCCCCceEEeeEEEeeCCCceEEeecCccccCCC
Q 010734 400 SYGASGVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPG 479 (502)
Q Consensus 400 IYGA~~V~fS~~A~kqLk~ie~~Gf~~LPVCmAKTqySlSdDp~l~g~P~gf~i~Vrdv~~~aGAGFiv~~~G~I~tMPG 479 (502)
||||++|+||++|++||++||++||++||||||||||||||||+++|+|+||+||||||++|+||||||++||+||||||
T Consensus 535 IYGAd~VefS~~AkkqLk~ie~lGfg~LPVCmAKTqyS~S~dp~l~G~P~gf~~~ir~~~~~~GAGFiv~l~G~i~tMPG 614 (637)
T PLN02759 535 SYGADGVEYSEQAEAQIEMYTRQGFSNLPICMAKTQYSFSHDASLKGAPSGFTLPIRDVRASVGAGFIYPLVGTMSTMPG 614 (637)
T ss_pred ccCCCceEECHHHHHHHHHHHHcCCCCCCeeEecCCCCcCCChhhhCCCCCcEEEeeEEEEcCCCCEEEEecCccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeeeeeCCCCeEeecC
Q 010734 480 LPTRPCFYEIDVDTATGKVVGLS 502 (502)
Q Consensus 480 Lpk~Paa~~Idid~~~G~I~GL~ 502 (502)
|||+|+|++||||+++|+|+|||
T Consensus 615 Lp~~Paa~~idid~~~G~i~GL~ 637 (637)
T PLN02759 615 LPTRPCFYDIDIDTETGKVLGLS 637 (637)
T ss_pred CCCCCcccccccccCCCEEecCC
Confidence 99999999999998999999998
No 2
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=100.00 E-value=4.2e-230 Score=1803.15 Aligned_cols=490 Identities=66% Similarity=1.050 Sum_probs=482.1
Q ss_pred CccccccccchhhHHHHHHhHHHHHHHhhhhcccCcChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHH
Q 010734 1 MDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPE 80 (502)
Q Consensus 1 me~iNLHfTGD~hAIt~A~NLlaA~idn~i~~~n~~~~~~~~~~l~p~~~~g~r~~~~~~~~r~~~l~~~~~~p~~~~~~ 80 (502)
||||||||||||||||||||||||+|||||||+|+|+|++||+||| +|+|+||++|++||+||||+|+||++||+|
T Consensus 134 me~iNLHfTGD~HAItaA~NLlaA~iDn~i~~~n~~~d~~l~~~l~----~~~r~~~~~~~~rl~~lgi~~~~p~~lt~e 209 (625)
T PTZ00386 134 MEDFNLHGTGDIHAITAANNLLAAALDTRIFHERTQSDAALYRRLT----DELKKFTPIMLKRLEKLGISKTDPKQLTEE 209 (625)
T ss_pred hhhccccccchHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhhc----cccccccHHHHHHHHhhccCcCCccccCHH
Confidence 8999999999999999999999999999999999999999999999 799999999999999999999999999999
Q ss_pred HhhhhccCCCCCCceeeeecccccccccceeEeccCCCCCCcceecceeEeehhhHHHHHHccCCHHHHHHHhcCcEEee
Q 010734 81 EINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGN 160 (502)
Q Consensus 81 ~~~~~~~l~iDp~~I~w~Rv~D~NDR~LR~I~iglg~~~~G~~re~gFdIT~ASEiMAIl~La~~l~Dlk~Rl~~ivv~~ 160 (502)
|+++|++|+|||++|+|+||||||||+||+|+||+|++.+|+|||||||||||||||||||||+|++|||+|||||||||
T Consensus 210 e~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I~vGlG~~~~G~~Re~gFdITvASEiMAIl~La~dl~Dlr~Rlg~ivva~ 289 (625)
T PTZ00386 210 ERVRFARLDIDPDTISWRRVTDVNDRMLREITIGQGKEEKGITRKTGFDISVASEVMAILALATDLADMRQRLGAIVVAK 289 (625)
T ss_pred HhhhhhhcCcCcceeEEEeeccccchhhhceeeCcCCCCCCCcccCCceeEHHHHHHHHHHHhCCHHHHHHHHhceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeecccccchhHHHHhhhccCcCcceeecCceeEEcccccchhcccCchHHHHHHHHHhcCCCCeEEeeccccc
Q 010734 161 SKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGA 240 (502)
Q Consensus 161 ~~~g~pvta~DL~~~GAm~~lLkdAi~PNLvQTlEgtPa~vHgGPFANIAhG~nSviAtk~alkla~~~dyvVTEAGFga 240 (502)
|+||+||||+||+++||||+|||||||||||||+||||||||||||||||||||||||||+||||++++|||||||||||
T Consensus 290 ~~~g~pVta~DL~~~GAmt~LLkDAikPNLvQTlEgtPa~VHgGPFANIAhG~nSviAt~~ALkla~~~dyvVTEAGFGa 369 (625)
T PTZ00386 290 SKSGEPVTAEDLGCAGAMTVLMKDTIEPTLMQTLEGTPVLVHAGPFGNIAHGNSSIVADQIALKLAGQDGFVLTEAGFGA 369 (625)
T ss_pred cCCCCceeHHHcCchHHHHHHHHhhcccceeeecCCCceEEecCCcchhhcccHHHHHHHHHHHhCCCCCeEEEeccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred cccchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcEE
Q 010734 241 DIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVV 320 (502)
Q Consensus 241 DlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvV 320 (502)
|||||||||||||.+|++|||+||||||||||||||+++.+ +.+||+++|++||+||+|||+|+++||+|||
T Consensus 370 DlGaEKF~dIkcR~sgl~P~a~VlVaTvRALK~hGG~~~~~--------l~~enl~al~~G~~NL~~Hien~~~fgvpvV 441 (625)
T PTZ00386 370 DIGCEKFFNIKCRTSGLKPDAAVLVATVRALKFHGGVEPVV--------AGKENLEAVRKGLSNLQRHIQNIRKFGVPVV 441 (625)
T ss_pred CCCchhhccccccccCCCcCEEEEEeehHHHHHhCCCCccc--------cCccCHHHHHHHHHHHHHHHHHHHHcCCCeE
Confidence 99999999999999999999999999999999999998744 5579999999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHH-HcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCCCCHHHHHHHHHH
Q 010734 321 VAVNMFATDSKAELNAVRNAAM-AAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR 399 (502)
Q Consensus 321 VAINrF~tDT~~Ei~~v~~~c~-~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~ 399 (502)
||||+|++||++|+++|+++|+ ++|+.++++|+||++||+|++|||++|+++|++++++|+|||++++||+|||++||+
T Consensus 442 VAIN~F~tDT~~Ei~~i~~~~~~~~ga~~~~~s~~~a~GG~Ga~eLA~~Vv~a~~~~~s~fk~LYd~~~sI~eKIetIAk 521 (625)
T PTZ00386 442 VALNKFSTDTDAELELVKELALQEGGAADVVVTDHWAKGGAGAVDLAQALIRVTENVPSNFKLLYPLDASLKEKIETICK 521 (625)
T ss_pred EEecCCCCCCHHHHHHHHHHHHHhcCCccEEEechhhccchhHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999 999546999999999999999999999999986577899999999999999999999
Q ss_pred -HhCCCceeeCHHHHHHHHHHHHCCCCCCCeeEeecCCCCCCCCCCCCCCCCceEEeeEEEeeCCCceEEeecCccccCC
Q 010734 400 -SYGASGVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMP 478 (502)
Q Consensus 400 -IYGA~~V~fS~~A~kqLk~ie~~Gf~~LPVCmAKTqySlSdDp~l~g~P~gf~i~Vrdv~~~aGAGFiv~~~G~I~tMP 478 (502)
||||++|+||++|++||++||++||++||||||||||||||||+++|+|+||+||||||++|+||||||++||+|||||
T Consensus 522 eIYGA~gVefS~~AkkqLk~ie~~G~~~LPVCmAKTqyS~S~dp~l~G~P~gf~l~irdv~~~aGAGFiv~l~G~i~tMP 601 (625)
T PTZ00386 522 EIYGAAGVEYLNDADEKLEDFERMGYGKFPVCMAKTQYSFSHDPELRGAPTGFTVPIRDVRVNCGAGFVFPLLGDISTMP 601 (625)
T ss_pred HccCCCcEEECHHHHHHHHHHHHcCCCCCCeEEeccCCCcCCChhhcCCCCCCEEEeeEEEEcCCCCEEEEecCCcccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeeeeeeCCCCeEeecC
Q 010734 479 GLPTRPCFYEIDVDTATGKVVGLS 502 (502)
Q Consensus 479 GLpk~Paa~~Idid~~~G~I~GL~ 502 (502)
||||+|+|++||||+++|+|+|||
T Consensus 602 GLp~~Paa~~idid~~~G~i~GL~ 625 (625)
T PTZ00386 602 GLPTRPAFYNIDIDCETGKIVGLS 625 (625)
T ss_pred CCCCCCCceeccccCCCCEEeccC
Confidence 999999999999998999999998
No 3
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=100.00 E-value=2.4e-219 Score=1714.66 Aligned_cols=458 Identities=52% Similarity=0.856 Sum_probs=451.0
Q ss_pred CccccccccchhhHHHHHHhHHHHHHHhhhhcccCcChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHH
Q 010734 1 MDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPE 80 (502)
Q Consensus 1 me~iNLHfTGD~hAIt~A~NLlaA~idn~i~~~n~~~~~~~~~~l~p~~~~g~r~~~~~~~~r~~~l~~~~~~p~~~~~~ 80 (502)
||||||||||||||||||||||||+|||||||+|+|+|++|+.|
T Consensus 128 me~iNLHfTGD~hAitaA~NLlaA~idn~i~~~n~~~~~~l~~~------------------------------------ 171 (587)
T PRK13507 128 LTPFSLGLTGDINAIMNAHNLAMVALTARMQHERNYTDEQLARR------------------------------------ 171 (587)
T ss_pred hhhccccccChHHHHHHHHHHHHHHHHHHHhccCccccchhhcc------------------------------------
Confidence 89999999999999999999999999999999999999998753
Q ss_pred HhhhhccCCCCCCceeeeecccccccccceeEeccCCCCCCcceecceeEeehhhHHHHHHccCCHHHHHHHhcCcEEee
Q 010734 81 EINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGN 160 (502)
Q Consensus 81 ~~~~~~~l~iDp~~I~w~Rv~D~NDR~LR~I~iglg~~~~G~~re~gFdIT~ASEiMAIl~La~~l~Dlk~Rl~~ivv~~ 160 (502)
.|++|+|||++|+||||||||||+||+|+||+|++.||+|||+|||||||||||||||||+|++|||+|||||||||
T Consensus 172 ---~~~~L~IDp~~I~w~RvlD~NDR~LR~I~vGlG~~~~G~~Re~gFdITvASEiMAIlcLa~~l~Dlk~Rlg~ivva~ 248 (587)
T PRK13507 172 ---GLKRLDIDPTRVEMGWIIDFCAQALRNIIIGIGGKTDGYMMQSGFGIAVSSEVMAILSVATDLKDLRERIGKIVVAY 248 (587)
T ss_pred ---cccccCCCcceeeEeecccccchhhhceeeCcCCCCCCccccCCceeeHHHHHHHHHHHcCCHHHHHHHHhcEEEEE
Confidence 36699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeecccccchhHHHHhhhccCcCcceeecCceeEEcccccchhcccCchHHHHHHHHHhcCCCCeEEeeccccc
Q 010734 161 SKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGA 240 (502)
Q Consensus 161 ~~~g~pvta~DL~~~GAm~~lLkdAi~PNLvQTlEgtPa~vHgGPFANIAhG~nSviAtk~alkla~~~dyvVTEAGFga 240 (502)
|+||+||||+||+++||||+|||||||||||||+||||||||||||||||||||||||||+||||+ |||||||||||
T Consensus 249 ~~~g~PVta~DL~~~GAmt~LLkDAikPNLvQTlEgtPa~vHgGPFANIAHG~nSviAt~~ALkla---dyvVTEAGFGa 325 (587)
T PRK13507 249 DKNGKPVTTADLEVDGAMTAWMVRAINPNLLQTIEGQPVFVHAGPFANIAIGQSSIIADRVGLKLA---DYHVTESGFGA 325 (587)
T ss_pred cCCCCeeeHHhccchHhHHHHHHhhcCcceeeecCCCceEEecCCcchhhcccHHHHHHHHHHhcC---CeEEeccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred cccchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcEE
Q 010734 241 DIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVV 320 (502)
Q Consensus 241 DlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvV 320 (502)
|||||||||||||.+|++|||+||||||||||||||++...+|+|||++|.+||++||++||+||+|||+|+++||+|||
T Consensus 326 DlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~hgG~~~~~~g~~l~~~l~~enl~al~~G~~NL~~Hi~n~~~fg~pvV 405 (587)
T PRK13507 326 DIGFEKFWNLKCRLSGLKPDCAVIVATIRALKMHGGGPKVVPGKPLPEEYTKENVGLVEKGCANLLHHIGTVKKSGINPV 405 (587)
T ss_pred CCChhheeeeeccccCCCCCEEEEEeEhHHHHHcCCCCccccCCccchhccccCHHHHHHHHHHHHHHHHHHHHcCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCCCCHHHHHHHHHH-
Q 010734 321 VAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR- 399 (502)
Q Consensus 321 VAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~- 399 (502)
||||+|++||++||++|+++|+++|+. +++|+||++||+|++|||++|+++|++ +++|+|||++++||+|||++||+
T Consensus 406 VaiN~F~~Dt~~Ei~~l~~~~~~~g~~-~~v~~~wa~GGeGa~eLA~~Vv~a~e~-~s~fk~LYd~~~sI~EKIetIAke 483 (587)
T PRK13507 406 VCINAFYTDTHAEIAIVRRLAEQAGAR-VAVSRHWEKGGEGALELADAVIDACNE-PNDFKFLYPLEMPLRERIETIARE 483 (587)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHcCCC-EEEechhhccchhHHHHHHHHHHHhhC-cCCCcccCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999995 999999999999999999999999985 67899999999999999999999
Q ss_pred HhCCCceeeCHHHHHHHHHHHHCC-CCCCCeeEeecCCCCCCCCCCCCCCCCceEEeeEEEeeCCCceEEeecCccccCC
Q 010734 400 SYGASGVEYSEEAEKQIEMYTGQG-FSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMP 478 (502)
Q Consensus 400 IYGA~~V~fS~~A~kqLk~ie~~G-f~~LPVCmAKTqySlSdDp~l~g~P~gf~i~Vrdv~~~aGAGFiv~~~G~I~tMP 478 (502)
||||++|+||++|++||++||++| |++||||||||||||||||+++|+|+||+|||||||+|+||||||++||+|||||
T Consensus 484 IYGAdgVe~S~~A~kqLk~le~~gGfg~LPVCmAKTqyS~S~d~~~~g~P~gf~~~ir~v~~~~GAGFiv~l~G~i~tMP 563 (587)
T PRK13507 484 VYGADGVSYTPEAEAKLKRLESDPETADFGTCMVKTHLSLSHDPALKGVPKGWTLPIRDILTYGGAGFVVPVAGDISLMP 563 (587)
T ss_pred ccCCCceeECHHHHHHHHHHHhcCCCCCCCEEEEecCcCcCCCccccCCCCCcEEEeeEEEEcCCCCEEEEecCCcccCC
Confidence 999999999999999999999996 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeeeeeeCCCCeEeecC
Q 010734 479 GLPTRPCFYEIDVDTATGKVVGLS 502 (502)
Q Consensus 479 GLpk~Paa~~Idid~~~G~I~GL~ 502 (502)
||||+|+|++||||+++|+|+|||
T Consensus 564 GLp~~Paa~~idid~~~G~i~GL~ 587 (587)
T PRK13507 564 GTGSDPAFRRIDVDTQTGKVKGLF 587 (587)
T ss_pred CCCCCCccccccccCCCCEEeccC
Confidence 999999999999998999999998
No 4
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=100.00 E-value=1.5e-218 Score=1710.94 Aligned_cols=458 Identities=54% Similarity=0.865 Sum_probs=448.9
Q ss_pred CccccccccchhhHHHHHHhHHHHHHHhhhhcccCcChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHH
Q 010734 1 MDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPE 80 (502)
Q Consensus 1 me~iNLHfTGD~hAIt~A~NLlaA~idn~i~~~n~~~~~~~~~~l~p~~~~g~r~~~~~~~~r~~~l~~~~~~p~~~~~~ 80 (502)
||||||||||||||||||||||+|+|||||||+|+++|+++ +
T Consensus 119 me~iNLHfTGD~hAItaA~NLlaA~iDn~i~~gn~~~~~~~--------------------------------------~ 160 (578)
T PRK13506 119 MEELNLHLTGDIHAVSAAHNLAAAAIDARLFHEQRLGYDAF--------------------------------------E 160 (578)
T ss_pred HhhccccccChHHHHHHHHHHHHHHHHHHHhccCccCccch--------------------------------------h
Confidence 89999999999999999999999999999999997665441 3
Q ss_pred HhhhhccCCCCCCceeeeecccccccccceeEeccCCCCCCcceecceeEeehhhHHHHHHccCCHHHHHHHhcCcEEee
Q 010734 81 EINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGN 160 (502)
Q Consensus 81 ~~~~~~~l~iDp~~I~w~Rv~D~NDR~LR~I~iglg~~~~G~~re~gFdIT~ASEiMAIl~La~~l~Dlk~Rl~~ivv~~ 160 (502)
|+++|++|+|||++|+||||||||||+||+|+||+|++.||+|||||||||||||||||||||+|++|||+|||||||||
T Consensus 161 ~~~~~~~l~IDp~~I~w~Rv~DmNDR~LR~I~vglg~~~~G~~Re~gFdITvASEiMAIlcLa~dl~Dlk~Rl~~ivv~~ 240 (578)
T PRK13506 161 AQSGLPALDIDPEQILWKRVVDHNDRALRMITVGLGENGNGPEREDGFDITAASELMAILALSRDLKDMRQRIGRLVLAY 240 (578)
T ss_pred hhccccccCcCcCeeEEeecccccchhhhceeeCcCCCCCCCcccCCceeeHHHHHHHHHHHcCCHHHHHHHhhcEEEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeecccccchhHHHHhhhccCcCcceeecCceeEEcccccchhcccCchHHHHHHHHHhcCCCCeEEeeccccc
Q 010734 161 SKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGA 240 (502)
Q Consensus 161 ~~~g~pvta~DL~~~GAm~~lLkdAi~PNLvQTlEgtPa~vHgGPFANIAhG~nSviAtk~alkla~~~dyvVTEAGFga 240 (502)
|+||+||||+||+++||||+|||||||||||||+||||||||||||||||||||||||||+||||+ |||||||||||
T Consensus 241 ~~~g~pVta~DL~~~GAm~~LLkDAikPNLvQTlEgtPa~vHgGPFANIAhG~nSviAt~~aLkla---DyvVTEAGFGa 317 (578)
T PRK13506 241 NLQGQPITAEDLGVAGAMTVIMKDAIEPTLMQTLEGVPCLIHAGPFANIAHGNSSIIADRIALKLA---DYVVTEGGFGS 317 (578)
T ss_pred cCCCCceeHHHccchHhHHHHHHHhccchhheecCCCeeEEecCCcccccccchHHHHHHHHHhhc---CeEEeeccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred cccchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcEE
Q 010734 241 DIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVV 320 (502)
Q Consensus 241 DlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvV 320 (502)
|||||||||||||.+|++|||+||||||||||||||+.....|+|||++|.+||+++|++||+||+|||||+++||+|||
T Consensus 318 DlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~hGG~~~~~~g~pl~~~l~~en~~al~~G~~NL~~Hi~n~~~fg~pvV 397 (578)
T PRK13506 318 DMGFEKFCNIKARQSGKAPDCAVLVATLRALKANSGLYDLRPGQALPDSINAPDQARLEAGFANLKWHINNVAQYGLPVV 397 (578)
T ss_pred CCCCceeeeeeeccCCCCCceEEEEEEeehHHhcCCCCCcccCcccchhccccCHHHHHHHHHHHHHHHHHHHHcCCCeE
Confidence 99999999999999999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHH-cCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCCCCHHHHHHHHHH
Q 010734 321 VAVNMFATDSKAELNAVRNAAMA-AGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR 399 (502)
Q Consensus 321 VAINrF~tDT~~Ei~~v~~~c~~-~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~ 399 (502)
||||+|++||++||++|+++|++ .|+ ++++|+||++||+|++|||++|+++|++ +++|+|||++++||+|||++||+
T Consensus 398 VaiN~F~~Dt~~Ei~~~~~~~~~~~~~-~~~~~~~wa~GGeGa~eLA~~Vv~a~e~-~s~fk~LYd~~~sI~eKIetIAk 475 (578)
T PRK13506 398 VAINRFPTDTDEELEWLKEAVLLTGAF-GCEISEAFAQGGEGATALAQAVVRACEQ-PSQFKLLYPDEMSLEAKLMTLAE 475 (578)
T ss_pred EEecCCCCCCHHHHHHHHHHHHHcCCC-cEEEechhhccchhHHHHHHHHHHHhhC-cCCCcccCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999 576 5999999999999999999999999985 67899999999999999999999
Q ss_pred -HhCCCceeeCHHHHHHHHHHHHCCCCCCCeeEeecCCCCCCCCCCCCCCCCceEEeeEEEeeCCCceEEeecCccccCC
Q 010734 400 -SYGASGVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMP 478 (502)
Q Consensus 400 -IYGA~~V~fS~~A~kqLk~ie~~Gf~~LPVCmAKTqySlSdDp~l~g~P~gf~i~Vrdv~~~aGAGFiv~~~G~I~tMP 478 (502)
||||++|+||++|++||++||++||++||||||||||||||||+++|+|+||+||||||++|+||||||++||+|||||
T Consensus 476 eIYGA~gVefS~~A~kqLk~ie~~Gf~~LPVCmAKTq~S~S~d~~l~g~P~~f~~~ir~~~~~~GAgfiv~~~g~i~tMP 555 (578)
T PRK13506 476 VGYGAAGVSLSDKAKQQLAQLTALGYDHLPVCMAKTPLSISHDPALKGAPTDFEVPIRELRLCAGAGFITALVGNVMTMP 555 (578)
T ss_pred HccCCCceEECHHHHHHHHHHHHcCCCCCCEEEEecCCccCCChhhcCCCCCcEEEeeEEEEcCCCCEEEEecCccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeeeeeeCCCCeEeecC
Q 010734 479 GLPTRPCFYEIDVDTATGKVVGLS 502 (502)
Q Consensus 479 GLpk~Paa~~Idid~~~G~I~GL~ 502 (502)
||||+|+|++|||| ++|+|+|||
T Consensus 556 GLp~~Paa~~idid-~~g~i~Gl~ 578 (578)
T PRK13506 556 GLGLKPGYLNIDID-ADGEIVGLS 578 (578)
T ss_pred CCCCCCccccCccC-CCCcEecCC
Confidence 99999999999999 999999998
No 5
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=100.00 E-value=1.4e-216 Score=1696.63 Aligned_cols=437 Identities=58% Similarity=0.942 Sum_probs=366.7
Q ss_pred CccccccccchhhHHHHHHhHHHHHHHhhhhcccCcChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHH
Q 010734 1 MDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPE 80 (502)
Q Consensus 1 me~iNLHfTGD~hAIt~A~NLlaA~idn~i~~~n~~~~~~~~~~l~p~~~~g~r~~~~~~~~r~~~l~~~~~~p~~~~~~ 80 (502)
||||||||||||||||||||||||+|||||||+|
T Consensus 119 me~iNLhfTGD~hAIt~A~NLlaA~idn~i~~gn---------------------------------------------- 152 (557)
T PF01268_consen 119 MEDINLHFTGDFHAITAANNLLAAMIDNHIYHGN---------------------------------------------- 152 (557)
T ss_dssp HHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHTTS----------------------------------------------
T ss_pred hHHeeccccCcHHHHHHHHHHHHHHHHHHHhccc----------------------------------------------
Confidence 8999999999999999999999999999999999
Q ss_pred HhhhhccCCCCCCceeeeecccccccccceeEeccCCCCCCcceecceeEeehhhHHHHHHccCCHHHHHHHhcCcEEee
Q 010734 81 EINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGN 160 (502)
Q Consensus 81 ~~~~~~~l~iDp~~I~w~Rv~D~NDR~LR~I~iglg~~~~G~~re~gFdIT~ASEiMAIl~La~~l~Dlk~Rl~~ivv~~ 160 (502)
+|+|||++|+||||||||||+||+|+||+|++.||+|||+|||||||||||||||||+|++|||+|||||||||
T Consensus 153 ------~l~iDp~~I~w~Rv~D~NDR~LR~i~iglg~~~~G~~r~~~FdIT~ASEiMAilcLa~~l~Dlk~Rl~~ivv~~ 226 (557)
T PF01268_consen 153 ------ELNIDPRRITWKRVLDMNDRALRNIVIGLGGKANGVPREDGFDITVASEIMAILCLATDLEDLKERLGRIVVAY 226 (557)
T ss_dssp ------TT-EECCCE---EEESS--GGGSSEEESTSSCCC---EEE-EEEGGGSHHHHHHHC-SSHHHHHHHHHC-EEEE
T ss_pred ------cCCCCcceeeeeeeccccchhhhheeeCCCCCCCCCcccCceeeEechhhheehhhhcCHHHHHHHHhCEEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeecccccchhHHHHhhhccCcCcceeecCceeEEcccccchhcccCchHHHHHHHHHhcCCCCeEEeeccccc
Q 010734 161 SKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGA 240 (502)
Q Consensus 161 ~~~g~pvta~DL~~~GAm~~lLkdAi~PNLvQTlEgtPa~vHgGPFANIAhG~nSviAtk~alkla~~~dyvVTEAGFga 240 (502)
|+||+|||++||+++||||+|||||||||||||+||||+|||||||||||||||||||||+||||+ |||||||||||
T Consensus 227 ~~~~~pvta~dl~~~Gam~~LLkdAikPNLvQTlEgtPa~vHgGPFANIAhG~nSviAt~~al~l~---dyvvTEAGFGa 303 (557)
T PF01268_consen 227 TKDGKPVTAEDLGAAGAMTALLKDAIKPNLVQTLEGTPAFVHGGPFANIAHGCNSVIATKMALKLA---DYVVTEAGFGA 303 (557)
T ss_dssp ETTS-EEECHHHT-HHHHHHHTTTTTS-EEEEETTS-EEEE-----SSSS--B--HHHHHHHHHHS---SEEEEEBSSST
T ss_pred cCCCCeEEHHHcCCcHhHHHHHHhhcCchhhhhcccCceEEeccccccccccCchHHHHHHHHhhc---ceeeccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred cccchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcEE
Q 010734 241 DIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVV 320 (502)
Q Consensus 241 DlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvV 320 (502)
|||||||||||||.+|++|||||||||+||||||||+++ ++|.+||++||++||+||+|||+|+|+||+|||
T Consensus 304 DlGaEKF~dIkcr~~gl~P~~~VlVaTvRALK~HGG~~~--------~~l~~eNl~al~~G~~NL~rHIeNik~fGvpvV 375 (557)
T PF01268_consen 304 DLGAEKFFDIKCRKSGLKPDAVVLVATVRALKMHGGVAK--------DDLNEENLEALEKGFANLERHIENIKKFGVPVV 375 (557)
T ss_dssp TTHHHHHHHTHHHHHT---SEEEEEEEHHHHHHHTT--G--------GGTTS--HHHHHHHHHHHHHHHHHHHCTT--EE
T ss_pred ccChhhhcCccchhcccCcceEEEeeechHHHhhcCCCc--------cccCccCHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 999999999999999999999999999999999999975 668899999999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh-hcCCCCccccCCCCCCHHHHHHHHHH
Q 010734 321 VAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC-ENVTQPLKFLYPLDVSIKEKIDTIAR 399 (502)
Q Consensus 321 VAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~-e~~~~~fk~LY~~~~sI~eKIe~IA~ 399 (502)
||||+|++||++||++|+++|+++|++ +++|+||++||+|++|||++|+++| ++++++|+|||++++||+|||++||+
T Consensus 376 VAIN~F~tDT~aEi~~I~~~~~~~Gv~-~avs~~wa~GGeGa~eLA~~Vv~a~ee~~~~~fk~LY~l~~sI~eKIe~IA~ 454 (557)
T PF01268_consen 376 VAINRFPTDTDAEIELIRELCEELGVR-AAVSEHWAKGGEGAVELAEAVVEACEEEEPSNFKPLYDLEDSIEEKIETIAT 454 (557)
T ss_dssp EEEE--TTS-HHHHHHHHHHCCCCCEE-EEEC-HHHHGGGGCHHHHHHHHHH-HHHS------SS-TTS-HHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHHHHhCCCC-EEEechhhcccccHHHHHHHHHHHhhccCCCCcCcccCCcccHHHHHHHHHh
Confidence 999999999999999999999999995 9999999999999999999999999 55678899999999999999999999
Q ss_pred -HhCCCceeeCHHHHHHHHHHHHCCCCCCCeeEeecCCCCCCCCCCCCCCCCceEEeeEEEeeCCCceEEeecCccccCC
Q 010734 400 -SYGASGVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMP 478 (502)
Q Consensus 400 -IYGA~~V~fS~~A~kqLk~ie~~Gf~~LPVCmAKTqySlSdDp~l~g~P~gf~i~Vrdv~~~aGAGFiv~~~G~I~tMP 478 (502)
||||++|+||++|++||++||++||++||||||||||||||||+++|+|+||+||||||++|+|||||||+||+|||||
T Consensus 455 eIYGA~~V~~S~~A~kqLk~~e~~Gf~~LPVCmAKTqySlSdDp~l~G~P~~f~i~Vrdv~~saGAGFvv~l~G~I~tMP 534 (557)
T PF01268_consen 455 EIYGADGVEYSPKAKKQLKKIEKLGFGNLPVCMAKTQYSLSDDPKLKGAPTGFTIPVRDVRISAGAGFVVALTGDIMTMP 534 (557)
T ss_dssp HTT--SEEEE-HHHHHHHHHHHHCTTTTS-EEEES-SSSSSSSTT--SS--S-EEEE-EEEEETTTCEEEECSSTTTSS-
T ss_pred hhcCCCcceeCHHHHHHHHHHHhcCCCcCceEEecCCCCccCCCcccCCCCCcEEEEeEEEEcCCCcEEEEEeccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeeeeeeCCCCeEeecC
Q 010734 479 GLPTRPCFYEIDVDTATGKVVGLS 502 (502)
Q Consensus 479 GLpk~Paa~~Idid~~~G~I~GL~ 502 (502)
||||+|+|++|||| ++|+|+|||
T Consensus 535 GLpk~Paa~~idid-~~G~I~GLf 557 (557)
T PF01268_consen 535 GLPKRPAAENIDID-EDGNIVGLF 557 (557)
T ss_dssp ---SS-GGGC-EEC-TTTEECS--
T ss_pred CCCCCccceeCCCC-CCCCEecCC
Confidence 99999999999999 999999998
No 6
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.3e-213 Score=1633.91 Aligned_cols=437 Identities=56% Similarity=0.910 Sum_probs=433.2
Q ss_pred CccccccccchhhHHHHHHhHHHHHHHhhhhcccCcChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHH
Q 010734 1 MDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPE 80 (502)
Q Consensus 1 me~iNLHfTGD~hAIt~A~NLlaA~idn~i~~~n~~~~~~~~~~l~p~~~~g~r~~~~~~~~r~~~l~~~~~~p~~~~~~ 80 (502)
||||||||||||||||+|||||+|+|||||||||
T Consensus 117 mediNLHfTGD~HAItaAnNllsA~Idnhi~~gn---------------------------------------------- 150 (554)
T COG2759 117 MEDINLHFTGDFHAITAANNLLSAAIDNHIYHGN---------------------------------------------- 150 (554)
T ss_pred hhhccccccCchhHHHHHHHHHHHHHHhhhhcCc----------------------------------------------
Confidence 8999999999999999999999999999999999
Q ss_pred HhhhhccCCCCCCceeeeecccccccccceeEeccCCCCCCcceecceeEeehhhHHHHHHccCCHHHHHHHhcCcEEee
Q 010734 81 EINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGN 160 (502)
Q Consensus 81 ~~~~~~~l~iDp~~I~w~Rv~D~NDR~LR~I~iglg~~~~G~~re~gFdIT~ASEiMAIl~La~~l~Dlk~Rl~~ivv~~ 160 (502)
+|+|||+||+||||||||||+||+|++|+|++.||+|||||||||||||+|||||||+|++|||+|||||||||
T Consensus 151 ------~l~ID~~rI~wkRv~DmNDRaLR~I~vglg~~~~G~~RedgFdITvASEiMAIlcLa~dlkDlk~Rl~~iviay 224 (554)
T COG2759 151 ------ELGIDPRRITWKRVVDMNDRALRSIVVGLGGPENGVPREDGFDITVASEIMAILCLATDLKDLKERLGRIVIAY 224 (554)
T ss_pred ------ccCcCcceEEEEeeeccchhhhhheeeccCCccCCcccCCCceeehHHHHHHHHHHhhhHHHHHHHHhheEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeecccccchhHHHHhhhccCcCcceeecCceeEEcccccchhcccCchHHHHHHHHHhcCCCCeEEeeccccc
Q 010734 161 SKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGA 240 (502)
Q Consensus 161 ~~~g~pvta~DL~~~GAm~~lLkdAi~PNLvQTlEgtPa~vHgGPFANIAhG~nSviAtk~alkla~~~dyvVTEAGFga 240 (502)
++||+|||++||+++||||+|||||||||||||||||||||||||||||||||||||||++||||+ |||||||||||
T Consensus 225 ~~~~~PV~~~Dl~~~GAma~lLkDAikPNLvQTlEgtPa~VHgGPFANIAhGcnSiiAt~~AlkL~---dy~VTEAGFga 301 (554)
T COG2759 225 DYDGKPVTAGDLKVEGAMAALLKDAIKPNLVQTLEGTPAFVHGGPFANIAHGCNSIIATKTALKLA---DYVVTEAGFGA 301 (554)
T ss_pred ecCCCceeeeccccchHHHHHHHhhccccceeecCCCceeEecCccchhhccchhHHHHHHHHhhc---CeEEEeccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred cccchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcEE
Q 010734 241 DIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVV 320 (502)
Q Consensus 241 DlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvV 320 (502)
|||||||||||||.+|++|||||||||+||||||||+++ ++|.+||+++|++||+||.|||+|+|+||||||
T Consensus 302 DlGaEKF~dIK~r~~gl~PdavVlVATvRALK~hGG~~~--------~~l~~Env~avk~G~aNL~~Hi~Nikkfgvp~V 373 (554)
T COG2759 302 DLGAEKFFDIKCRSSGLKPDAVVLVATVRALKMHGGVPK--------EDLTEENVDAVKKGFANLLKHIENIKKFGVPVV 373 (554)
T ss_pred ccchhhhcceeccccCCCCCeEEEeeehHHHHHcCCCCh--------HHhcchhHHHHHHHHHHHHHHHHHHHHcCCCeE
Confidence 999999999999999999999999999999999999984 889999999999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCCCCHHHHHHHHHH-
Q 010734 321 VAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR- 399 (502)
Q Consensus 321 VAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~- 399 (502)
||||+|++||++||+.|+++|+++|++ +++|+||++||+|++|||++|++++++++++|++||+.++||++||++||+
T Consensus 374 VAIN~F~tDt~~Ei~~i~~~~~~~gv~-~~ls~vwakGg~Gg~eLA~kVv~~~~~~~~~f~~lYd~~~~i~~Ki~~I~~~ 452 (554)
T COG2759 374 VAINKFPTDTEAEIAAIEKLCEEHGVE-VALSEVWAKGGEGGIELAKKVVEAIEQNDSEFKRLYDVEDPIEEKIEKIAKE 452 (554)
T ss_pred EEeccCCCCCHHHHHHHHHHHHHcCCc-eeehhhhhccCccHHHHHHHHHHHHhCCcccceeecccCCcHHHHHHHHHHH
Confidence 999999999999999999999999995 999999999999999999999999998778999999999999999999999
Q ss_pred HhCCCceeeCHHHHHHHHHHHHCCCCCCCeeEeecCCCCCCCCCCCCCCCCceEEeeEEEeeCCCceEEeecCccccCCC
Q 010734 400 SYGASGVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPG 479 (502)
Q Consensus 400 IYGA~~V~fS~~A~kqLk~ie~~Gf~~LPVCmAKTqySlSdDp~l~g~P~gf~i~Vrdv~~~aGAGFiv~~~G~I~tMPG 479 (502)
||||++|+||++|++||++||++||++||||||||||||||||+|+|+|+||+|||||+++|+|||||||+||+||||||
T Consensus 453 iYga~~v~~s~~A~~ql~~~~~~g~d~lPiCmAKTqYS~Sddp~llg~P~~F~v~Ir~~~~s~GAGFival~g~ImtMPG 532 (554)
T COG2759 453 IYGADGVEFSPKAKEQLKTFEKQGFDNLPICMAKTQYSFSDDPSLLGAPTGFTVPIRELRLSAGAGFIVALTGEIMTMPG 532 (554)
T ss_pred hcCCcceeeCHHHHHHHHHHHHhCCCCCceeEecCcccccCCHhhcCCCCCcEEEeeEeEecCCCceEeeeccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeeeeeCCCCeEeecC
Q 010734 480 LPTRPCFYEIDVDTATGKVVGLS 502 (502)
Q Consensus 480 Lpk~Paa~~Idid~~~G~I~GL~ 502 (502)
|||+|+|++|||| |+|+|+|||
T Consensus 533 Lpk~Paa~~idv~-e~G~i~GLf 554 (554)
T COG2759 533 LPKKPAAENIDVD-EDGEIVGLF 554 (554)
T ss_pred CCCCcchhceeec-CCCceeccC
Confidence 9999999999999 999999998
No 7
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=100.00 E-value=8.7e-212 Score=1661.77 Aligned_cols=437 Identities=53% Similarity=0.869 Sum_probs=432.0
Q ss_pred CccccccccchhhHHHHHHhHHHHHHHhhhhcccCcChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHH
Q 010734 1 MDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPE 80 (502)
Q Consensus 1 me~iNLHfTGD~hAIt~A~NLlaA~idn~i~~~n~~~~~~~~~~l~p~~~~g~r~~~~~~~~r~~~l~~~~~~p~~~~~~ 80 (502)
||||||||||||||||||||||||+|||||||+|
T Consensus 120 me~inLhftGD~hAit~A~NLlaA~idn~i~~gn---------------------------------------------- 153 (557)
T PRK13505 120 MEDINLHFTGDFHAITSANNLLAALIDNHIHQGN---------------------------------------------- 153 (557)
T ss_pred HhHccccccChHHHHHHHHHHHHHHHHHHHhccC----------------------------------------------
Confidence 8999999999999999999999999999999999
Q ss_pred HhhhhccCCCCCCceeeeecccccccccceeEeccCCCCCCcceecceeEeehhhHHHHHHccCCHHHHHHHhcCcEEee
Q 010734 81 EINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGN 160 (502)
Q Consensus 81 ~~~~~~~l~iDp~~I~w~Rv~D~NDR~LR~I~iglg~~~~G~~re~gFdIT~ASEiMAIl~La~~l~Dlk~Rl~~ivv~~ 160 (502)
+|+|||++|+||||||||||+||+|+||+|++.||+|||+|||||||||||||||||+|++|||+|||||||||
T Consensus 154 ------~l~id~~~i~w~Rv~D~NDR~LR~i~iglg~~~~G~~re~gFdIT~ASEiMAilcLa~~l~Dl~~Rl~~ivv~~ 227 (557)
T PRK13505 154 ------ELGIDPRRITWKRVLDMNDRALRNIVVGLGGPANGVPREDGFDITVASEIMAILCLATDLKDLKERLGRIVVGY 227 (557)
T ss_pred ------ccCCCcceeEEEecccccchhhhceEeccCCCCCCCcccCCceeeHHHHHHHHHHHhCCHHHHHHHHhCEEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeecccccchhHHHHhhhccCcCcceeecCceeEEcccccchhcccCchHHHHHHHHHhcCCCCeEEeeccccc
Q 010734 161 SKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGA 240 (502)
Q Consensus 161 ~~~g~pvta~DL~~~GAm~~lLkdAi~PNLvQTlEgtPa~vHgGPFANIAhG~nSviAtk~alkla~~~dyvVTEAGFga 240 (502)
|+||+||||+||+++||||+|||||||||||||+||||||||||||||||||||||||||+||||+ |||||||||||
T Consensus 228 ~~~~~pvt~~dl~~~GAm~~lLkdAi~PnLvQTle~tPa~vHgGPFANIAhG~nSviAt~~al~la---dyvvTEaGFGa 304 (557)
T PRK13505 228 TYDGKPVTVKDLKVEGAMALLLKDAIKPNLVQTLEGTPAFVHGGPFANIAHGCNSVLATKTALKLA---DYVVTEAGFGA 304 (557)
T ss_pred cCCCCceeHHHcCchHHHHHHHHhhcccceeeecCCCceEEecCCcchhhcccHHHHHHHHHHhhC---CEEEecccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred cccchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcEE
Q 010734 241 DIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVV 320 (502)
Q Consensus 241 DlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvV 320 (502)
|||||||||||||.+|++|||+||||||||||||||+++ ++|.+||+|++++||.||+|||||+|+||+|+|
T Consensus 305 DlGaEKF~dIkcr~~gl~P~~~VlVaTvraLK~hgg~~~--------~~l~~en~Eal~sGl~NL~RHIenvr~FGvPvV 376 (557)
T PRK13505 305 DLGAEKFLDIKCRKAGLKPDAVVIVATVRALKMHGGVAK--------DDLKEENVEALKKGFANLERHIENIRKFGVPVV 376 (557)
T ss_pred CCCCceeeeeecccCCCCCCEEEEEeehHHHHHcCCCCh--------hhccccCHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 999999999999999999999999999999999999885 678899999999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCCCCHHHHHHHHHH-
Q 010734 321 VAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR- 399 (502)
Q Consensus 321 VAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~- 399 (502)
||||+|++||++|++.|+++|++.|+. +++|+||++||+|+++||++|++++++++++|+|+|++++|+++||++||+
T Consensus 377 VAINKFd~DTe~Ei~~I~~~c~e~Gv~-va~~~~~~~Gg~Gai~LA~aVveA~~~~~s~f~~lY~~d~sl~eKIe~IAkk 455 (557)
T PRK13505 377 VAINKFVTDTDAEIAALKELCEELGVE-VALSEVWAKGGEGGVELAEKVVELIEEGESNFKPLYDDEDSLEEKIEKIATK 455 (557)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCC-EEEecccccCCcchHHHHHHHHHHHhcCCCCCceecCCCCcHHHHHHHHHHH
Confidence 999999999999999999999999995 999999999999999999999999996567899999999999999999999
Q ss_pred HhCCCceeeCHHHHHHHHHHHHCCCCCCCeeEeecCCCCCCCCCCCCCCCCceEEeeEEEeeCCCceEEeecCccccCCC
Q 010734 400 SYGASGVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPG 479 (502)
Q Consensus 400 IYGA~~V~fS~~A~kqLk~ie~~Gf~~LPVCmAKTqySlSdDp~l~g~P~gf~i~Vrdv~~~aGAGFiv~~~G~I~tMPG 479 (502)
||||++|+||++|++||++||++||++||||||||||||||||+++|+|+||+||||||++|+||||||++||+||||||
T Consensus 456 IYGA~~V~~s~~A~kqL~~~e~~Gf~~lPVCmAKTqyS~s~d~~~~g~p~~f~~~ir~~~~~~GAgfiv~~~g~i~tmPG 535 (557)
T PRK13505 456 IYGAKGVEFSPKAKKQLKQIEKNGWDKLPVCMAKTQYSFSDDPKLLGAPTGFTITVRELRPSAGAGFIVALTGDIMTMPG 535 (557)
T ss_pred ccCCCCeeECHHHHHHHHHHHHcCCCCCCeEEEccCCCcCCChhhhCCCCCcEEEeeEEEEcCCCCEEEEecCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeeeeeCCCCeEeecC
Q 010734 480 LPTRPCFYEIDVDTATGKVVGLS 502 (502)
Q Consensus 480 Lpk~Paa~~Idid~~~G~I~GL~ 502 (502)
|||+|+|++|||| ++|+|+|||
T Consensus 536 Lp~~Paa~~idid-~~g~i~gl~ 557 (557)
T PRK13505 536 LPKVPAALNIDVD-EDGNIVGLF 557 (557)
T ss_pred CCCCCcccccccC-CCCceecCC
Confidence 9999999999999 999999998
No 8
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=100.00 E-value=7.9e-210 Score=1632.68 Aligned_cols=420 Identities=64% Similarity=1.023 Sum_probs=414.2
Q ss_pred CccccccccchhhHHHHHHhHHHHHHHhhhhcccCcChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHH
Q 010734 1 MDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPE 80 (502)
Q Consensus 1 me~iNLHfTGD~hAIt~A~NLlaA~idn~i~~~n~~~~~~~~~~l~p~~~~g~r~~~~~~~~r~~~l~~~~~~p~~~~~~ 80 (502)
||||||||||||||||||||||||+|||||||+|
T Consensus 103 me~iNLhfTGD~hAItaA~NLlaA~iDn~i~~gn---------------------------------------------- 136 (524)
T cd00477 103 MEEINLHFTGDIHAITAANNLLAAAIDNHIHHGN---------------------------------------------- 136 (524)
T ss_pred HhhhcccccchHHHHHHHHHHHHHHHHHHHhccc----------------------------------------------
Confidence 8999999999999999999999999999999999
Q ss_pred HhhhhccCCCCCCceeeeecccccccccceeEeccCCCCCCcceecceeEeehhhHHHHHHccCCHHHHHHHhcCcEEee
Q 010734 81 EINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGN 160 (502)
Q Consensus 81 ~~~~~~~l~iDp~~I~w~Rv~D~NDR~LR~I~iglg~~~~G~~re~gFdIT~ASEiMAIl~La~~l~Dlk~Rl~~ivv~~ 160 (502)
+|+|||++|+||||||||||+||+|+||+|++.||+|||+|||||||||||||||||+|++|||+|||||||||
T Consensus 137 ------~l~iDp~~I~w~Rv~D~NDR~LR~iviglGg~~~G~~re~gFdITvASEiMAIlcLa~~l~DLk~Rl~~ivv~~ 210 (524)
T cd00477 137 ------RLDIDPRRITWKRVLDVNDRALRKIVIGLGGKENGVPRETGFDITVASEIMAILCLATDLEDLKERLGRIVVAY 210 (524)
T ss_pred ------ccCCCcceeEEEecccccchhhhceEeccCCCCCCccccCCceeeHHHHHHHHHHHcCCHHHHHHHHhCEEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeecccccchhHHHHhhhccCcCcceeecCceeEEcccccchhcccCchHHHHHHHHHhcCCCCeEEeeccccc
Q 010734 161 SKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGA 240 (502)
Q Consensus 161 ~~~g~pvta~DL~~~GAm~~lLkdAi~PNLvQTlEgtPa~vHgGPFANIAhG~nSviAtk~alkla~~~dyvVTEAGFga 240 (502)
|+||+||||+||+++||||+|||||||||||||+||||||||||||||||||||||||||+||||+ |||||||||||
T Consensus 211 ~~~g~PVta~DL~~~GAmt~LLkdAikPNLvQTlEgtPa~vHgGPFANIAhGcnSviAtk~al~la---DyvVTEAGFGa 287 (524)
T cd00477 211 SKDGEPVTAEDLGVAGAMAVLLKDAIKPNLVQTLEGTPAFVHGGPFANIAHGCNSIIADKIALKLA---DYVVTEAGFGA 287 (524)
T ss_pred cCCCCcEeHHHcCchHhHHHHHHhhhCccceeecCCCceEEecCCcccccccchHHHHHHHHHhhc---CeEEeeccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred cccchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcc-cccHHHHHHHHhhHHHHHHHHhhcCCcE
Q 010734 241 DIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYL-NENVALVEAGCVNLARHIANTKAYGANV 319 (502)
Q Consensus 241 DlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~-~eNl~AL~~G~~NL~kHIeNi~~fGvPv 319 (502)
|||||||||||||.+|++|||+||||||||||||||+++. ++. +||++||++||+||+|||||+|+||+||
T Consensus 288 DlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~hGG~~~~--------~l~~~en~~al~~G~~NL~~Hi~n~~~fg~p~ 359 (524)
T cd00477 288 DLGAEKFFNIKCRYSGLKPDAVVLVATVRALKMHGGVPKV--------TLGLEENLEALEKGFANLRKHIENIKKFGVPV 359 (524)
T ss_pred CCCCceeeeeeeccCCCCCCEEEEEEehHHHHHhCCCCcc--------cCCCccCHHHHHhHHHHHHHHHHHHHHcCCCe
Confidence 9999999999999999999999999999999999999874 455 8999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCCCCHHHHHHHHHH
Q 010734 320 VVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR 399 (502)
Q Consensus 320 VVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~ 399 (502)
|||||+|++||++||++|+++|+++|++ +++|+||++||+|++|||++|+++|++ +++|+|||++++||+|||++||+
T Consensus 360 VVaiN~F~~Dt~~Ei~~v~~~~~~~g~~-~~~~~~~~~GG~Ga~eLA~~Vi~a~e~-~s~fk~LY~~~~si~eKIetIAk 437 (524)
T cd00477 360 VVAINKFSTDTDAELALVRKLAEEAGAF-VAVSEHWAEGGKGAVELAEAVIEACEQ-PSEFKFLYDLEDPLEDKIETIAK 437 (524)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHcCCC-EEEehhhhhhhhhHHHHHHHHHHHhcC-CCCCccccCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999995 999999999999999999999999985 67899999999999999999999
Q ss_pred -HhCCCceeeCHHHHHHHHHHHHCCCCCCCeeEeecCCCCCCCCCCCCCCCCceEEeeEEEeeCCCceEEeecCccccCC
Q 010734 400 -SYGASGVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMP 478 (502)
Q Consensus 400 -IYGA~~V~fS~~A~kqLk~ie~~Gf~~LPVCmAKTqySlSdDp~l~g~P~gf~i~Vrdv~~~aGAGFiv~~~G~I~tMP 478 (502)
||||++|+||++|++||++||++||++||||||||||||||||+++|+|+||+||||||++|+||||||++||+|||||
T Consensus 438 ~IYGA~~V~~S~~A~kqLk~ie~~Gfg~LPvCmAKTqyS~S~d~~~~g~P~~f~~~vr~~~~~~GAgfiv~l~g~i~tMP 517 (524)
T cd00477 438 KIYGADGVELSPKAKKKLARYEKQGFGNLPVCMAKTQYSLSDDPSLKGAPTGFTLPIRDVRLSAGAGFIVALTGDIMTMP 517 (524)
T ss_pred HccCCCceeECHHHHHHHHHHHHcCCCCCCeEEEcCCCCcCCCccccCCCCCcEEEeeEEEEcCCCCEEEEecCCcccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCc
Q 010734 479 GLPTRPC 485 (502)
Q Consensus 479 GLpk~Pa 485 (502)
||||+|+
T Consensus 518 GLp~~Pa 524 (524)
T cd00477 518 GLPKRPA 524 (524)
T ss_pred CCCCCCC
Confidence 9999996
No 9
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.4e-204 Score=1594.64 Aligned_cols=499 Identities=64% Similarity=1.056 Sum_probs=495.6
Q ss_pred CccccccccchhhHHHHHHhHHHHHHHhhhhcccCcChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHH
Q 010734 1 MDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPE 80 (502)
Q Consensus 1 me~iNLHfTGD~hAIt~A~NLlaA~idn~i~~~n~~~~~~~~~~l~p~~~~g~r~~~~~~~~r~~~l~~~~~~p~~~~~~ 80 (502)
|||||||+||||||||||||||+|+||+||||+|+|+|++||+|||| .|+|+|+|++.|+||||||||+|+||++||||
T Consensus 430 mdefnlhltgdihaitaannllaaaidtrmfhe~tq~daal~krlvp-~kng~r~f~~~m~rrlkrl~i~k~dp~~lt~e 508 (935)
T KOG4230|consen 430 MDEFNLHLTGDIHAITAANNLLAAAIDTRMFHENTQSDAALYKRLVP-VKNGKRKFTPSMIRRLKRLGIEKTDPEDLTPE 508 (935)
T ss_pred hhhcccccccchhhhhhhhHHHHHHHHHHHHhhcccchHHHHHhhcc-ccCCeeecCHHHHHHHHHhccccCCcccCCHH
Confidence 89999999999999999999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred HhhhhccCCCCCCceeeeecccccccccceeEeccCCCCCCcceecceeEeehhhHHHHHHccCCHHHHHHHhcCcEEee
Q 010734 81 EINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGN 160 (502)
Q Consensus 81 ~~~~~~~l~iDp~~I~w~Rv~D~NDR~LR~I~iglg~~~~G~~re~gFdIT~ASEiMAIl~La~~l~Dlk~Rl~~ivv~~ 160 (502)
|+++|++|||||++|+|+||+|+|||+||+|+||+.++++|+.|.+|||||||||+||||+||+||+|||+||||||||.
T Consensus 509 e~~~farlnidpdtit~~rvldvndrflr~itig~a~tekg~tr~t~fdisvase~mailals~dl~dm~erlgrmvva~ 588 (935)
T KOG4230|consen 509 EIKKFARLNIDPDTITINRVLDVNDRFLRQITIGQAPTEKGHTRTTGFDISVASECMAILALSKDLNDMKERLGRMVVAA 588 (935)
T ss_pred HHHHhHcccCCCCeeEEEEEeccchhhhhheecccCccccCcccccccceehHHHHHHHHHHhccHHHHHHHhhcEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeecccccchhHHHHhhhccCcCcceeecCceeEEcccccchhcccCchHHHHHHHHHhcCCC------CeEEe
Q 010734 161 SKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPG------GFVVT 234 (502)
Q Consensus 161 ~~~g~pvta~DL~~~GAm~~lLkdAi~PNLvQTlEgtPa~vHgGPFANIAhG~nSviAtk~alkla~~~------dyvVT 234 (502)
+++|+|||++||||+||+|+||||||||||||||||||+|||+||||||+||.||||||++||||+|++ +||||
T Consensus 589 dk~g~pvtaedlgv~galtvllkdaikpnlmqtlegtpv~vhagpfanisigassiiadrialklvgte~~~keagyvvt 668 (935)
T KOG4230|consen 589 DKYGEPVTAEDLGVSGALTVLLKDAIKPNLMQTLEGTPVFVHAGPFANISIGASSIIADRIALKLVGTESRPKEAGYVVT 668 (935)
T ss_pred cCCCCcccHHhcCcchhHHHHHHhhcchhHHhhccCCeeEEecccccccccchHHHHHHHHHHHhcCCCCCcccCceEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999987 49999
Q ss_pred eccccccccchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhh
Q 010734 235 EAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKA 314 (502)
Q Consensus 235 EAGFgaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~ 314 (502)
||||++|||+|||||||||+|||.|++|||||||||||+|||.|...+|+|||++|.+||++.+++||+||.|||+|+++
T Consensus 669 eagf~~dmgmekffnikcr~sgl~p~avvlvatvralk~hgggp~v~pg~plp~~y~~en~dlv~kg~snl~k~i~n~~~ 748 (935)
T KOG4230|consen 669 EAGFASDMGMEKFFNIKCRYSGLVPNAVVLVATVRALKLHGGGPKVKPGQPLPEEYTEENLDLVEKGCSNLVKQIENIKK 748 (935)
T ss_pred ecccccccchhheeeeeeecCCCCCceEEEeehhHHHHhcCCCCCCCCCCCCcHHHHHhhHHHHHHHHHHHHHHHHhHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCCCCHHHHH
Q 010734 315 YGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKI 394 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~~sI~eKI 394 (502)
||+|||||||+|.+||+.||+.|++.+.++|+.+++.|+||++||+||++||++|+++|+. +++|++|||.+.|||+||
T Consensus 749 fgipvvvain~f~tds~~ei~~ir~~al~aga~dav~snhwaeggkgai~la~av~~a~~~-~s~f~llydv~~~iedk~ 827 (935)
T KOG4230|consen 749 FGIPVVVAINKFKTDSEKEIEAIREAALEAGAFDAVTSNHWAEGGKGAIELAKAVITACDS-PSKFRLLYDVNSSIEDKL 827 (935)
T ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHhcCCcccccccchhhcCccHHHHHHHHHHHhcC-CcceeEEEecCccHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999985 688999999999999999
Q ss_pred HHHHH-HhCCCceeeCHHHHHHHHHHHHCCCCCCCeeEeecCCCCCCCCCCCCCCCCceEEeeEEEeeCCCceEEeecCc
Q 010734 395 DTIAR-SYGASGVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGT 473 (502)
Q Consensus 395 e~IA~-IYGA~~V~fS~~A~kqLk~ie~~Gf~~LPVCmAKTqySlSdDp~l~g~P~gf~i~Vrdv~~~aGAGFiv~~~G~ 473 (502)
+.||+ +|||++|++||+|++++..|.++||++||||||||||||||||.++|+|+||++||||+|+|+||||+||+++.
T Consensus 828 ~~iaqkmyga~~ie~~p~aq~ki~~y~kqgfgnlpiciaktqyslshdp~~kgvpt~ft~pird~r~s~gagflyplaa~ 907 (935)
T KOG4230|consen 828 TIIAQKMYGAAGIELSPEAQEKIDTYKKQGFGNLPICIAKTQYSLSHDPELKGVPTGFTVPIRDMRLSAGAGFLYPLAAE 907 (935)
T ss_pred HHHHHHHcCCccceeCHHHHHHHHHHHhccCCCCceeeeecccccccCccccCCCCCceeechhhhcccCCcchhhhhHH
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCceeeeeeeCCCCeEeecC
Q 010734 474 MSTMPGLPTRPCFYEIDVDTATGKVVGLS 502 (502)
Q Consensus 474 I~tMPGLpk~Paa~~Idid~~~G~I~GL~ 502 (502)
|+||||||+.|++++|||| ++|+|.|||
T Consensus 908 iqtipglpt~p~y~~idi~-~~gei~gl~ 935 (935)
T KOG4230|consen 908 IQTIPGLPTYPAYMNIDID-ENGEIVGLF 935 (935)
T ss_pred hhcCCCCCCccceeeeeec-CCCcccccC
Confidence 9999999999999999999 999999998
No 10
>PRK15452 putative protease; Provisional
Probab=90.27 E-value=1.9 Score=46.89 Aligned_cols=155 Identities=19% Similarity=0.198 Sum_probs=89.3
Q ss_pred CCCeEEEEeeehhhhhc--CCCCCccCCCCCchh-cccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHH
Q 010734 258 TPQCAVIVATIRALKMH--GGGPQVVAGKPLDHA-YLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAEL 334 (502)
Q Consensus 258 ~P~a~VlVaTvRALK~H--GG~~~~~~~~pl~~~-l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei 334 (502)
+|...|-|-|.-+||.- .|+..+-+|-+-... ....|. ..+.|++.++-.++.|+.+.|++|+++.+ +|+
T Consensus 3 ~peLlapag~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f-----~~edl~eav~~ah~~g~kvyvt~n~i~~e--~el 75 (443)
T PRK15452 3 KPELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEF-----NHENLALGINEAHALGKKFYVVVNIAPHN--AKL 75 (443)
T ss_pred ccEEEEECCCHHHHHHHHHCCCCEEEECCCccchhhhccCC-----CHHHHHHHHHHHHHcCCEEEEEecCcCCH--HHH
Confidence 36677777777777643 455544444210000 000111 11347778888999999999999999884 566
Q ss_pred HHHHHHHH---HcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCCCCHHH--HHHHHHHHhCCCceeeC
Q 010734 335 NAVRNAAM---AAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKE--KIDTIARSYGASGVEYS 409 (502)
Q Consensus 335 ~~v~~~c~---~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~~sI~e--KIe~IA~IYGA~~V~fS 409 (502)
+.+.++.+ +.|+..+.+++. |.+.++++. .| ++..-++...++.. -++-.. =+|+++|++|
T Consensus 76 ~~~~~~l~~l~~~gvDgvIV~d~------G~l~~~ke~------~p-~l~ih~stqlni~N~~a~~f~~-~lG~~rvvLS 141 (443)
T PRK15452 76 KTFIRDLEPVIAMKPDALIMSDP------GLIMMVREH------FP-EMPIHLSVQANAVNWATVKFWQ-QMGLTRVILS 141 (443)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCH------HHHHHHHHh------CC-CCeEEEEecccCCCHHHHHHHH-HCCCcEEEEC
Confidence 66665544 689975555542 455555542 11 22322333333332 222222 4799999999
Q ss_pred HHH-HHHHHHHHHC---------CCCCCCeeEee
Q 010734 410 EEA-EKQIEMYTGQ---------GFSGLPICMAK 433 (502)
Q Consensus 410 ~~A-~kqLk~ie~~---------Gf~~LPVCmAK 433 (502)
++. .+||+.+.+. -+|.+|++...
T Consensus 142 rELsl~EI~~i~~~~~~~elEvfVHGalc~m~Sg 175 (443)
T PRK15452 142 RELSLEEIEEIRQQCPDMELEVFVHGALCMAYSG 175 (443)
T ss_pred CcCCHHHHHHHHhhCCCCCEEEEEEccchheeeC
Confidence 887 5788887632 34566666544
No 11
>PLN02591 tryptophan synthase
Probab=90.07 E-value=5.2 Score=40.50 Aligned_cols=143 Identities=18% Similarity=0.249 Sum_probs=86.5
Q ss_pred CCCCCccCCCCCch------hcccccHHHHHHHHhhHHHHH---HHHhh-cCCcEEE--EecCCCCCCHHHHHHHHHHHH
Q 010734 275 GGGPQVVAGKPLDH------AYLNENVALVEAGCVNLARHI---ANTKA-YGANVVV--AVNMFATDSKAELNAVRNAAM 342 (502)
Q Consensus 275 GG~~~~~~~~pl~~------~l~~eNl~AL~~G~~NL~kHI---eNi~~-fGvPvVV--AINrF~tDT~~Ei~~v~~~c~ 342 (502)
+|+.-..+|-|-.+ -+.+-+..||+.|+ |+.+=. +.+|+ +.+|+|+ -.|-+- .-=++...+.|+
T Consensus 28 ~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~-~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~---~~G~~~F~~~~~ 103 (250)
T PLN02591 28 CGADVIELGVPYSDPLADGPVIQAAATRALEKGT-TLDSVISMLKEVAPQLSCPIVLFTYYNPIL---KRGIDKFMATIK 103 (250)
T ss_pred CCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCC-CHHHHHHHHHHHhcCCCCCEEEEecccHHH---HhHHHHHHHHHH
Confidence 56665555543332 34567888999886 444444 44443 5778653 234321 123456678889
Q ss_pred HcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCCCCHHHHHHHHHH-----Hh-----CCCce--eeCH
Q 010734 343 AAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-----SY-----GASGV--EYSE 410 (502)
Q Consensus 343 ~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~-----IY-----GA~~V--~fS~ 410 (502)
++|+..+.+-+. -.|-++.+.+.|++..=.+-++...+.+ +++|+.||+ || |..+. .+.+
T Consensus 104 ~aGv~GviipDL-------P~ee~~~~~~~~~~~gl~~I~lv~Ptt~-~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~ 175 (250)
T PLN02591 104 EAGVHGLVVPDL-------PLEETEALRAEAAKNGIELVLLTTPTTP-TERMKAIAEASEGFVYLVSSTGVTGARASVSG 175 (250)
T ss_pred HcCCCEEEeCCC-------CHHHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHhCCCcEEEeeCCCCcCCCcCCch
Confidence 999986666653 1355667777776532235567766655 445666664 55 33333 3567
Q ss_pred HHHHHHHHHHHCCCCCCCeeE
Q 010734 411 EAEKQIEMYTGQGFSGLPICM 431 (502)
Q Consensus 411 ~A~kqLk~ie~~Gf~~LPVCm 431 (502)
..++-++++++. .++|||+
T Consensus 176 ~~~~~i~~vk~~--~~~Pv~v 194 (250)
T PLN02591 176 RVESLLQELKEV--TDKPVAV 194 (250)
T ss_pred hHHHHHHHHHhc--CCCceEE
Confidence 777778888884 6899997
No 12
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=87.67 E-value=8 Score=39.37 Aligned_cols=144 Identities=19% Similarity=0.265 Sum_probs=89.4
Q ss_pred CCCCCccCCCCCch------hcccccHHHHHHHH--hhHHHHHHHHhh-cCCcEEE--EecCCCCCCHHHHHHHHHHHHH
Q 010734 275 GGGPQVVAGKPLDH------AYLNENVALVEAGC--VNLARHIANTKA-YGANVVV--AVNMFATDSKAELNAVRNAAMA 343 (502)
Q Consensus 275 GG~~~~~~~~pl~~------~l~~eNl~AL~~G~--~NL~kHIeNi~~-fGvPvVV--AINrF~tDT~~Ei~~v~~~c~~ 343 (502)
+|+.-..+|-|-.+ -+.+.+..||+.|+ ..+..-++.+|+ +.+|+|+ -.|-+-. -=++...+.|++
T Consensus 41 ~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~---~G~e~F~~~~~~ 117 (263)
T CHL00200 41 KGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLH---YGINKFIKKISQ 117 (263)
T ss_pred CCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHH---hCHHHHHHHHHH
Confidence 55555555533322 34567888999887 233444555554 6788652 2343221 123445677888
Q ss_pred cCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCCCCHHHHHHHHHH-----Hh-----CCCce--eeCHH
Q 010734 344 AGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-----SY-----GASGV--EYSEE 411 (502)
Q Consensus 344 ~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~-----IY-----GA~~V--~fS~~ 411 (502)
.|+..+.+-+. . .|-++.+.+.|.+..-.+-++...+.| .+.|+.|++ || |..+. .+.+.
T Consensus 118 aGvdgviipDL-P------~ee~~~~~~~~~~~gi~~I~lv~PtT~-~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~ 189 (263)
T CHL00200 118 AGVKGLIIPDL-P------YEESDYLISVCNLYNIELILLIAPTSS-KSRIQKIARAAPGCIYLVSTTGVTGLKTELDKK 189 (263)
T ss_pred cCCeEEEecCC-C------HHHHHHHHHHHHHcCCCEEEEECCCCC-HHHHHHHHHhCCCcEEEEcCCCCCCCCccccHH
Confidence 99975555543 2 244777777876543346677777765 556777776 34 55555 56778
Q ss_pred HHHHHHHHHHCCCCCCCeeE
Q 010734 412 AEKQIEMYTGQGFSGLPICM 431 (502)
Q Consensus 412 A~kqLk~ie~~Gf~~LPVCm 431 (502)
.++-++++++ .-++|||+
T Consensus 190 ~~~~i~~ir~--~t~~Pi~v 207 (263)
T CHL00200 190 LKKLIETIKK--MTNKPIIL 207 (263)
T ss_pred HHHHHHHHHH--hcCCCEEE
Confidence 8888888888 45899997
No 13
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=87.66 E-value=0.58 Score=48.37 Aligned_cols=171 Identities=18% Similarity=0.227 Sum_probs=102.1
Q ss_pred HHHHccCCHHHHHHHhcCcEEeecCCCCceeecccccchhHHHHhhhccCcCcceeec-CceeEEcccccchhcccCchH
Q 010734 138 AVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLE-GTPVLVHAGPFANIAHGNSSI 216 (502)
Q Consensus 138 AIl~La~~l~Dlk~Rl~~ivv~~~~~g~pvta~DL~~~GAm~~lLkdAi~PNLvQTlE-gtPa~vHgGPFANIAhG~nSv 216 (502)
++.|=-+-++.-+.++|+|.-+.+..|.|+.-..|++-=..++=|-+++|-+- .| .-.++|-+-|= -||+ |
T Consensus 108 ~~~CP~~AI~~~~~~~G~i~~~k~~~g~~li~g~l~vGe~~s~~lV~~~kk~a---~E~~~~~IIDsaaG----~gCp-V 179 (284)
T COG1149 108 SIVCPEPAIEEEPVVIGKIYESKTDYGFPLISGRLNVGEEESGKLVTALKKHA---KELADLLIIDSAAG----TGCP-V 179 (284)
T ss_pred eeeCCCcccccccceeeEEEEEEcCCCceeEEeeccCCccccchHHHHHHHhh---hhhcceeEEecCCC----CCCh-H
Confidence 34455555677888999999999988879999888876554444433332110 11 23344443332 2444 3
Q ss_pred HHHHHHHHhcCCCCeEEeeccccccccchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHH
Q 010734 217 VADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVA 296 (502)
Q Consensus 217 iAtk~alkla~~~dyvVTEAGFgaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~ 296 (502)
+|. ++ | -|.+++|+- | =
T Consensus 180 i~s---l~--------------~-------------------aD~ai~VTE----------P-------T---------- 196 (284)
T COG1149 180 IAS---LK--------------G-------------------ADLAILVTE----------P-------T---------- 196 (284)
T ss_pred HHh---hc--------------c-------------------CCEEEEEec----------C-------C----------
Confidence 321 11 2 344666652 1 1
Q ss_pred HHHHHHhhHHHHHHHHhhcCCcEEEEecCC-CCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 297 LVEAGCVNLARHIANTKAYGANVVVAVNMF-ATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 297 AL~~G~~NL~kHIeNi~~fGvPvVVAINrF-~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
-.|+-.|+|=+|-++.||+|+++.|||+ +.|+ .|+++|++.|+. ....=-| -+.+.++...
T Consensus 197 --p~glhD~kr~~el~~~f~ip~~iViNr~~~g~s-----~ie~~~~e~gi~-il~~IPy----------d~~i~~~~~~ 258 (284)
T COG1149 197 --PFGLHDLKRALELVEHFGIPTGIVINRYNLGDS-----EIEEYCEEEGIP-ILGEIPY----------DKDIPEAYVN 258 (284)
T ss_pred --ccchhHHHHHHHHHHHhCCceEEEEecCCCCch-----HHHHHHHHcCCC-eeEECCc----------chhHHHHHhC
Confidence 2467789999999999999999999999 2333 457999999995 5433223 2355555543
Q ss_pred CCCCccccCCCCCCHHHHHHHHHH-Hh
Q 010734 376 VTQPLKFLYPLDVSIKEKIDTIAR-SY 401 (502)
Q Consensus 376 ~~~~fk~LY~~~~sI~eKIe~IA~-IY 401 (502)
. +|+-..+.+=.+++..+.. +|
T Consensus 259 g----~~~~~~~~k~~~~~~~~~~~~~ 281 (284)
T COG1149 259 G----EPFVEPDSKEAEAILEEAEKLK 281 (284)
T ss_pred C----CccccccchHHHHHHHHHHHHH
Confidence 2 2233344555556655555 44
No 14
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=86.88 E-value=10 Score=38.26 Aligned_cols=154 Identities=11% Similarity=0.177 Sum_probs=92.0
Q ss_pred eehhhhh--cCCCCCccCCCCCch------hcccccHHHHHHHHh--hHHHHHHHHhh--cCCcEEEEecCCCCCCHHHH
Q 010734 267 TIRALKM--HGGGPQVVAGKPLDH------AYLNENVALVEAGCV--NLARHIANTKA--YGANVVVAVNMFATDSKAEL 334 (502)
Q Consensus 267 TvRALK~--HGG~~~~~~~~pl~~------~l~~eNl~AL~~G~~--NL~kHIeNi~~--fGvPvVVAINrF~tDT~~Ei 334 (502)
|++.++. -+|+.-..+|-|..+ -+.+.+..||+.|+. .+...++.+++ ..+|+| ..=-+..=-.-=+
T Consensus 26 ~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv-~m~Y~Npi~~~G~ 104 (256)
T TIGR00262 26 SLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIG-LLTYYNLIFRKGV 104 (256)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE-EEEeccHHhhhhH
Confidence 4555553 377777777754432 345667889998872 45566777775 478866 3322211000011
Q ss_pred HHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCCCCHHHHHHHHHH-----H-----hCCC
Q 010734 335 NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-----S-----YGAS 404 (502)
Q Consensus 335 ~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~-----I-----YGA~ 404 (502)
+...+.|++.|+..+.+-+. ..+-.+.+++.|.+..-.+-++..++.|.+ .|+.|+. | +|..
T Consensus 105 e~f~~~~~~aGvdgviipDl-------p~ee~~~~~~~~~~~gl~~i~lv~P~T~~e-ri~~i~~~~~gfiy~vs~~G~T 176 (256)
T TIGR00262 105 EEFYAKCKEVGVDGVLVADL-------PLEESGDLVEAAKKHGVKPIFLVAPNADDE-RLKQIAEKSQGFVYLVSRAGVT 176 (256)
T ss_pred HHHHHHHHHcCCCEEEECCC-------ChHHHHHHHHHHHHCCCcEEEEECCCCCHH-HHHHHHHhCCCCEEEEECCCCC
Confidence 33456677899965444432 334566777777653223456777777764 4555554 3 3445
Q ss_pred cee--eCHHHHHHHHHHHHCCCCCCCeeE
Q 010734 405 GVE--YSEEAEKQIEMYTGQGFSGLPICM 431 (502)
Q Consensus 405 ~V~--fS~~A~kqLk~ie~~Gf~~LPVCm 431 (502)
+.. |.+...+.++++.+. .+.|||+
T Consensus 177 G~~~~~~~~~~~~i~~lr~~--~~~pi~v 203 (256)
T TIGR00262 177 GARNRAASALNELVKRLKAY--SAKPVLV 203 (256)
T ss_pred CCcccCChhHHHHHHHHHhh--cCCCEEE
Confidence 553 889999999999986 3568886
No 15
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=86.48 E-value=6.8 Score=39.73 Aligned_cols=153 Identities=15% Similarity=0.257 Sum_probs=96.8
Q ss_pred eehhhhhc--CCCCCccCCCCCch------hcccccHHHHHHHHh--hHHHHHHHHh-h-cCCcEEEEe--cCCCCCCHH
Q 010734 267 TIRALKMH--GGGPQVVAGKPLDH------AYLNENVALVEAGCV--NLARHIANTK-A-YGANVVVAV--NMFATDSKA 332 (502)
Q Consensus 267 TvRALK~H--GG~~~~~~~~pl~~------~l~~eNl~AL~~G~~--NL~kHIeNi~-~-fGvPvVVAI--NrF~tDT~~ 332 (502)
|++.++.- +|+.-..+|-|..+ -+.+.+..||+.|+. .+..-++.++ + ..+|+|+-- |-+-.=
T Consensus 28 ~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~--- 104 (258)
T PRK13111 28 SLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQY--- 104 (258)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhc---
Confidence 55655543 77777777755432 355678899999973 3345556666 3 578877544 654321
Q ss_pred HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCCCCHHHHHHHHH---H--Hh-----C
Q 010734 333 ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIA---R--SY-----G 402 (502)
Q Consensus 333 Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA---~--IY-----G 402 (502)
-++...+.|++.|+..+.+.+. -.|-++.+++.+.+..=.+-++...+.| .+.|+.|+ . || |
T Consensus 105 G~e~f~~~~~~aGvdGviipDL-------p~ee~~~~~~~~~~~gl~~I~lvap~t~-~eri~~i~~~s~gfIY~vs~~G 176 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIPDL-------PPEEAEELRAAAKKHGLDLIFLVAPTTT-DERLKKIASHASGFVYYVSRAG 176 (258)
T ss_pred CHHHHHHHHHHcCCcEEEECCC-------CHHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHhCCCcEEEEeCCC
Confidence 3455678889999986666543 2356777777776532234455566665 44455554 4 66 4
Q ss_pred CCce--eeCHHHHHHHHHHHHCCCCCCCeeEe
Q 010734 403 ASGV--EYSEEAEKQIEMYTGQGFSGLPICMA 432 (502)
Q Consensus 403 A~~V--~fS~~A~kqLk~ie~~Gf~~LPVCmA 432 (502)
..++ .+++...+.++++.+. .+.|||+-
T Consensus 177 vTG~~~~~~~~~~~~i~~vk~~--~~~pv~vG 206 (258)
T PRK13111 177 VTGARSADAADLAELVARLKAH--TDLPVAVG 206 (258)
T ss_pred CCCcccCCCccHHHHHHHHHhc--CCCcEEEE
Confidence 5555 5677888889999885 47899873
No 16
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=85.78 E-value=5.1 Score=37.87 Aligned_cols=58 Identities=19% Similarity=0.246 Sum_probs=36.4
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHHHHH-HHHHHHHHcCCCeEEEcCccccCccchhHHHHHH
Q 010734 309 IANTKAYGANVVVAVNMFATDSKAELN-AVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAV 369 (502)
Q Consensus 309 IeNi~~fGvPvVVAINrF~tDT~~Ei~-~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~V 369 (502)
...++.+|+|+||++|+...=....+. ...++.+.+|++ ++ -.=+..|+|-.+|-+++
T Consensus 98 ~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~p-vi--~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 98 TLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVP-VI--PVSARTGEGIDELKDAI 156 (156)
T ss_dssp HHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS--EE--EEBTTTTBTHHHHHHHH
T ss_pred HHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCC-EE--EEEeCCCcCHHHHHhhC
Confidence 345667999999999997221111000 144556668996 43 34478899998888764
No 17
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=83.76 E-value=9.5 Score=37.92 Aligned_cols=89 Identities=17% Similarity=0.072 Sum_probs=52.3
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHH-HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCC
Q 010734 309 IANTKAYGANVVVAVNMFATDSKA-ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLD 387 (502)
Q Consensus 309 IeNi~~fGvPvVVAINrF~tDT~~-Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~ 387 (502)
.+.+++++.|+++++|+-..-..+ ..+.+.+++...+.. .+-..=++-|+|-.+|.+.+.+.+..++..|..-|-.+
T Consensus 100 ~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~--~v~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~ 177 (270)
T TIGR00436 100 LTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFK--DIVPISALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTD 177 (270)
T ss_pred HHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCC--ceEEEecCCCCCHHHHHHHHHHhCCCCCCCCCCcccCC
Confidence 445566899999999996442233 344555666554432 12234467789999999999888754322222222334
Q ss_pred CCHHHHHHHHHH
Q 010734 388 VSIKEKIDTIAR 399 (502)
Q Consensus 388 ~sI~eKIe~IA~ 399 (502)
.|.+.-+..|.|
T Consensus 178 ~~~~~~~~e~ir 189 (270)
T TIGR00436 178 QPDRFKISEIIR 189 (270)
T ss_pred CCHHHHHHHHHH
Confidence 455444444443
No 18
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=82.85 E-value=7.2 Score=43.74 Aligned_cols=99 Identities=20% Similarity=0.252 Sum_probs=61.4
Q ss_pred cchhccccccccCCCC-CCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCc-EE
Q 010734 243 GAEKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGAN-VV 320 (502)
Q Consensus 243 GaEKF~dIkcr~~gl~-P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvP-vV 320 (502)
|-|+|. +...+|+. .|++++|..+.- |.. .....|+..++.+|+| +|
T Consensus 59 Ghe~f~--~~~~~g~~~aD~aILVVDa~~-----G~~------------------------~qT~ehl~il~~lgi~~iI 107 (581)
T TIGR00475 59 GHEKFI--SNAIAGGGGIDAALLVVDADE-----GVM------------------------TQTGEHLAVLDLLGIPHTI 107 (581)
T ss_pred CHHHHH--HHHHhhhccCCEEEEEEECCC-----CCc------------------------HHHHHHHHHHHHcCCCeEE
Confidence 456664 44555554 799999877541 110 2334577778889999 99
Q ss_pred EEecCCCCCCHHHHHH----HHHHHHHc----CCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 321 VAVNMFATDSKAELNA----VRNAAMAA----GAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 321 VAINrF~tDT~~Ei~~----v~~~c~~~----Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
|++|+-..-++++++. ++++++.. ++. +..+. +.=|+|-.+|-+.+.+.++.
T Consensus 108 VVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~-ii~vS--A~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 108 VVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAK-IFKTS--AKTGQGIGELKKELKNLLES 167 (581)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCc-EEEEe--CCCCCCchhHHHHHHHHHHh
Confidence 9999976655565544 44444443 343 33333 44567877887777666653
No 19
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=82.67 E-value=3.9 Score=40.05 Aligned_cols=68 Identities=21% Similarity=0.264 Sum_probs=45.9
Q ss_pred cchhccccccccCCC---CCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcE
Q 010734 243 GAEKFMNIKCRYSGL---TPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANV 319 (502)
Q Consensus 243 GaEKF~dIkcr~~gl---~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPv 319 (502)
|-|+|.. .-..|+ .||++++|.-.+ + |. ...-.+|++-++..|+|+
T Consensus 93 G~~~~~~--~~~~~~~~~~~D~~llVvda~----~-g~------------------------~~~d~~~l~~l~~~~ip~ 141 (224)
T cd04165 93 GHERYLK--TTLFGLTGYAPDYAMLVVAAN----A-GI------------------------IGMTKEHLGLALALNIPV 141 (224)
T ss_pred CcHHHHH--HHHHhhcccCCCEEEEEEECC----C-CC------------------------cHHHHHHHHHHHHcCCCE
Confidence 4577754 334444 699999887532 1 11 034577899999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHH
Q 010734 320 VVAVNMFATDSKAELNAVRNAA 341 (502)
Q Consensus 320 VVAINrF~tDT~~Ei~~v~~~c 341 (502)
||++|+..--++++++...+..
T Consensus 142 ivvvNK~D~~~~~~~~~~~~~l 163 (224)
T cd04165 142 FVVVTKIDLAPANILQETLKDL 163 (224)
T ss_pred EEEEECccccCHHHHHHHHHHH
Confidence 9999998765666665555433
No 20
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=82.24 E-value=3.4 Score=46.00 Aligned_cols=102 Identities=25% Similarity=0.357 Sum_probs=64.4
Q ss_pred ccchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcEEE
Q 010734 242 IGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVV 321 (502)
Q Consensus 242 lGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvVV 321 (502)
-|=|=|.+.-.|=+.+. |.+|||.-+ .+|=.| .-+|| |+.+|.+|+|.||
T Consensus 63 PGHeAFt~mRaRGa~vt-DIaILVVa~----dDGv~p--------------QTiEA-----------I~hak~a~vP~iV 112 (509)
T COG0532 63 PGHEAFTAMRARGASVT-DIAILVVAA----DDGVMP--------------QTIEA-----------INHAKAAGVPIVV 112 (509)
T ss_pred CcHHHHHHHHhcCCccc-cEEEEEEEc----cCCcch--------------hHHHH-----------HHHHHHCCCCEEE
Confidence 46677877667766555 555555542 333222 12333 7788899999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHcCCC------eEEEcCccccCccchhHHHHHHHHHhh
Q 010734 322 AVNMFATDSKAELNAVRNAAMAAGAF------DAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 322 AINrF~tDT~~Ei~~v~~~c~~~Gv~------~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
|+|+-.-- ++..+.++....+.|.. .+.+-..=|+.|+|--||-+.++-.++
T Consensus 113 AiNKiDk~-~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~ae 170 (509)
T COG0532 113 AINKIDKP-EANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAE 170 (509)
T ss_pred EEecccCC-CCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHH
Confidence 99985332 23344455555555542 244455558999999999888877765
No 21
>PRK00089 era GTPase Era; Reviewed
Probab=82.00 E-value=18 Score=36.05 Aligned_cols=75 Identities=17% Similarity=0.111 Sum_probs=46.9
Q ss_pred HHHHHHhhcCCcEEEEecCCCCC-CHHHHHHHH-HHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccC
Q 010734 307 RHIANTKAYGANVVVAVNMFATD-SKAELNAVR-NAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLY 384 (502)
Q Consensus 307 kHIeNi~~fGvPvVVAINrF~tD-T~~Ei~~v~-~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY 384 (502)
..++.++..++|+++++|+-.-- +.+++.... ++++..+...+..+ =++=|+|-.+|-+.+.+.+..++ ++|
T Consensus 104 ~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~i--SA~~~~gv~~L~~~L~~~l~~~~----~~y 177 (292)
T PRK00089 104 FILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPI--SALKGDNVDELLDVIAKYLPEGP----PYY 177 (292)
T ss_pred HHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEe--cCCCCCCHHHHHHHHHHhCCCCC----CCC
Confidence 44555566789999999997654 445555444 44443443223222 25667899999888888774322 466
Q ss_pred CCC
Q 010734 385 PLD 387 (502)
Q Consensus 385 ~~~ 387 (502)
+.+
T Consensus 178 ~~~ 180 (292)
T PRK00089 178 PED 180 (292)
T ss_pred CCC
Confidence 665
No 22
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=81.29 E-value=5.4 Score=45.69 Aligned_cols=90 Identities=24% Similarity=0.351 Sum_probs=60.2
Q ss_pred hhHHHHHHH---HhhcCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCC
Q 010734 303 VNLARHIAN---TKAYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVT 377 (502)
Q Consensus 303 ~NL~kHIeN---i~~fGvPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~ 377 (502)
.||+|++-- +..+|+|+|+|+|...--... +|+ +.+.-+.+|++ ++ ..-++=|+|-.||=++.++..+.+.
T Consensus 92 tnLeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID-~~~L~~~LGvP-Vv--~tvA~~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 92 TNLERNLYLTLQLLELGIPMILALNMIDEAKKRGIRID-IEKLSKLLGVP-VV--PTVAKRGEGLEELKRAIIELAESKT 167 (653)
T ss_pred chHHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCccc-HHHHHHHhCCC-EE--EEEeecCCCHHHHHHHHHHhccccc
Confidence 477777754 456999999999986321100 111 34455679996 43 3346778889999999998887643
Q ss_pred CCccccCCCCCCHHHHHHHHH
Q 010734 378 QPLKFLYPLDVSIKEKIDTIA 398 (502)
Q Consensus 378 ~~fk~LY~~~~sI~eKIe~IA 398 (502)
..+.+-|+ ..+++.|+.++
T Consensus 168 ~~~~~~y~--~~ie~~i~~l~ 186 (653)
T COG0370 168 TPREVDYG--EEIEEEIKELE 186 (653)
T ss_pred cccccccc--hHHHHHHHHHH
Confidence 34556664 47888887776
No 23
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=79.92 E-value=6.2 Score=40.34 Aligned_cols=128 Identities=14% Similarity=0.138 Sum_probs=75.6
Q ss_pred ccchhcccCchHHHHHHHHHhcCCCCeEEeeccccccccchhccccccccCCCCCCeEEEEeeehhhh---hcCCCCCcc
Q 010734 205 PFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALK---MHGGGPQVV 281 (502)
Q Consensus 205 PFANIAhG~nSviAtk~alkla~~~dyvVTEAGFgaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK---~HGG~~~~~ 281 (502)
|+.+..-+.-..-.+++.-|..--.||+||-..|..+. .++|++ +||..|+..-.+.=|.-+..+| +.-.+
T Consensus 138 Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~Fd~~~-~~~f~~-~~~~~gi~~PIi~GI~pi~s~~~~~~~~~~---- 211 (281)
T TIGR00677 138 PEGHPEAESVELDLKYLKEKVDAGADFIITQLFYDVDN-FLKFVN-DCRAIGIDCPIVPGIMPINNYASFLRRAKW---- 211 (281)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCEeeccceecHHH-HHHHHH-HHHHcCCCCCEEeeccccCCHHHHHHHHhc----
Confidence 66654433322223466666543448999999999876 678888 7999998854443333333333 22122
Q ss_pred CCCCCchhccc------ccHHH-HHHHHhhHHHHHHHHhhcCCcEE--EEecCCCCCCHHHHHHHHHHHHHcCC
Q 010734 282 AGKPLDHAYLN------ENVAL-VEAGCVNLARHIANTKAYGANVV--VAVNMFATDSKAELNAVRNAAMAAGA 346 (502)
Q Consensus 282 ~~~pl~~~l~~------eNl~A-L~~G~~NL~kHIeNi~~fGvPvV--VAINrF~tDT~~Ei~~v~~~c~~~Gv 346 (502)
+|-.+|+++.+ .+-++ -+.|++--.+.|+.+...|+|-| .++|++ +.+.+.|+.+|.
T Consensus 212 ~Gi~vP~~l~~~l~~~~~~~~~~~~~gi~~a~~~~~~l~~~G~~giH~~t~n~~--------~~~~~il~~l~~ 277 (281)
T TIGR00677 212 SKTKIPQEIMSRLEPIKDDDEAVRDYGIELIVEMCQKLLASGIKGLHFYTLNLE--------KAALMILERLGL 277 (281)
T ss_pred CCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHCCCCeeEEeccCch--------HHHHHHHHHcCC
Confidence 23345655443 23333 35688777788888888887743 445554 345555665554
No 24
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=78.22 E-value=48 Score=34.96 Aligned_cols=105 Identities=11% Similarity=0.084 Sum_probs=68.6
Q ss_pred cHHHHHHHHhhHHHHHHHHhhcCCc---EEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHH
Q 010734 294 NVALVEAGCVNLARHIANTKAYGAN---VVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQ 370 (502)
Q Consensus 294 Nl~AL~~G~~NL~kHIeNi~~fGvP---vVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv 370 (502)
++.++. +..|+.|-++-+++.|.+ .-+.+|++..+. + +.++|++.|+. +. |.+=.-+.|.
T Consensus 183 e~~si~-~A~~v~kai~~~~~lg~~~~i~GlViNr~d~~~--~---ie~~ae~lgi~-vL----------g~IP~D~~V~ 245 (329)
T cd02033 183 DLQSLY-VANNVCNAVEYFRKLGGNVGVAGMVINKDDGTG--E---AQAFAAHAGIP-IL----------AAIPADEELR 245 (329)
T ss_pred hHHHHH-HHHHHHHHHHHHHHhCCCCCceEEEEeCcCCcc--h---HHHHHHHhCCC-EE----------EECCCCHHHH
Confidence 344443 235788889989888755 568899975433 3 56778888885 42 3344456677
Q ss_pred HHhhcCCCCccccCCCCCCHHHHHHHHHH-HhCCCceeeCHHHHHHHHHH
Q 010734 371 RACENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEAEKQIEMY 419 (502)
Q Consensus 371 ~a~e~~~~~fk~LY~~~~sI~eKIe~IA~-IYGA~~V~fS~~A~kqLk~i 419 (502)
++..++ ++++..+.++.+.++.||+ |.....+.-.+.-.++|-.+
T Consensus 246 ~a~~~g----~~~~~p~s~~a~~f~~LA~~I~~~~~~~~~~~~~~~~~~~ 291 (329)
T cd02033 246 RKSAAY----QIVGRPGTTWGPLFEQLATNVAEAPPMRPKPLSQDELLGL 291 (329)
T ss_pred HHHHcC----CeecCCCCHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHH
Confidence 766543 2455556678999999999 87766666555555555443
No 25
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=78.07 E-value=18 Score=32.46 Aligned_cols=53 Identities=9% Similarity=0.083 Sum_probs=31.1
Q ss_pred ccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCC-----CCHHH----HHHHHHHHHHcCCC
Q 010734 293 ENVALVEAGCVNLARHIANTKAYGANVVVAVNMFAT-----DSKAE----LNAVRNAAMAAGAF 347 (502)
Q Consensus 293 eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAINrF~t-----DT~~E----i~~v~~~c~~~Gv~ 347 (502)
.+.+..++++.+|.+.+... .-+.++|+ +.-.+. ...++ -+.+++.|++.|+.
T Consensus 65 ~~~~~~~~~l~~li~~~~~~-~~~~~vi~-~~~~p~~~~~~~~~~~~~~~n~~l~~~a~~~~~~ 126 (169)
T cd01828 65 TSDEDIVANYRTILEKLRKH-FPNIKIVV-QSILPVGELKSIPNEQIEELNRQLAQLAQQEGVT 126 (169)
T ss_pred CCHHHHHHHHHHHHHHHHHH-CCCCeEEE-EecCCcCccCcCCHHHHHHHHHHHHHHHHHCCCE
Confidence 45677777776665554433 15666555 433333 23333 34578888988885
No 26
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=77.90 E-value=53 Score=34.42 Aligned_cols=104 Identities=20% Similarity=0.166 Sum_probs=55.9
Q ss_pred HHhhHHHHHHHHhhcCCcEEEEecCCC----CCCHHHHHHHHHHHHHcCCCeEEEcCcc---ccCc------cchhHHHH
Q 010734 301 GCVNLARHIANTKAYGANVVVAVNMFA----TDSKAELNAVRNAAMAAGAFDAVVCSHH---AHGG------KGAVDLGI 367 (502)
Q Consensus 301 G~~NL~kHIeNi~~fGvPvVVAINrF~----tDT~~Ei~~v~~~c~~~Gv~~~~vs~~w---akGG------eGa~eLA~ 367 (502)
|.+...+|++..+ .++|++|-|+... .++.+|...+.+.+.+ ++. +...+.- .+|+ +-..++.+
T Consensus 123 g~~~~~~~l~~~~-~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad-~lelN~scP~~~g~~~~~~~~~~~eiv~ 199 (344)
T PRK05286 123 GADALAERLKKAY-RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YAD-YFTVNISSPNTPGLRDLQYGEALDELLA 199 (344)
T ss_pred hHHHHHHHHHHhc-CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCC-EEEEEccCCCCCCcccccCHHHHHHHHH
Confidence 4444455555555 7899999998764 3466777777666653 453 4332221 1221 22334555
Q ss_pred HHHHHhhc----CCCCccccCCCCCCHHHHHHHHHH---HhCCCceeeCH
Q 010734 368 AVQRACEN----VTQPLKFLYPLDVSIKEKIDTIAR---SYGASGVEYSE 410 (502)
Q Consensus 368 ~Vv~a~e~----~~~~fk~LY~~~~sI~eKIe~IA~---IYGA~~V~fS~ 410 (502)
+|.+++.. .|=-.|.- .+.+.++ +..+|+ -+|++.|+.+.
T Consensus 200 aVr~~~~~~~~~~PV~vKls--p~~~~~~-~~~ia~~l~~~Gadgi~~~n 246 (344)
T PRK05286 200 ALKEAQAELHGYVPLLVKIA--PDLSDEE-LDDIADLALEHGIDGVIATN 246 (344)
T ss_pred HHHHHHhccccCCceEEEeC--CCCCHHH-HHHHHHHHHHhCCcEEEEeC
Confidence 55555431 11112222 2344433 666666 46999988765
No 27
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=77.41 E-value=13 Score=34.41 Aligned_cols=69 Identities=19% Similarity=0.195 Sum_probs=46.3
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHH-----HcCCCe---EEEcCccccCccchhHHHHHHHHHh
Q 010734 304 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAM-----AAGAFD---AVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 304 NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~-----~~Gv~~---~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
....|++-++.+++|+||+||+-..- +++++.+.+... ..+... +-+--.=+.=|+|-.+|-+.+++.+
T Consensus 110 ~~~~~l~~~~~~~~p~ivvlNK~D~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 110 QTEEHLKILRELGIPIIVVLNKMDLI-EKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp HHHHHHHHHHHTT-SEEEEEETCTSS-HHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred ccccccccccccccceEEeeeeccch-hhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 56789999999999999999997655 666665554433 333321 2222344556778888988888764
No 28
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=76.98 E-value=15 Score=32.12 Aligned_cols=56 Identities=9% Similarity=-0.101 Sum_probs=38.2
Q ss_pred cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 315 YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
.++|+||++|+..-..+. ..+...+++++.++. +..+. ++-|+|-.+|=+.+++.+
T Consensus 106 ~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 106 DEFPMILVGNKADLEHQRKVSREEGQELARKLKIP-YIETS--AKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred CCCCEEEEeeCccccccceecHHHHHHHHHHcCCc-EEEee--CCCCCCHHHHHHHHHHhh
Confidence 689999999997654332 233467778888874 44333 455888888877776543
No 29
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=76.10 E-value=7.9 Score=34.79 Aligned_cols=68 Identities=10% Similarity=0.068 Sum_probs=46.3
Q ss_pred hhHHHHHHHHhhc----CCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 303 VNLARHIANTKAY----GANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 303 ~NL~kHIeNi~~f----GvPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
.++...++.++.+ +.|++++.|+..--.+. ..+.+.++|++.++. .-+..++=|+|-.+|-+.+++.+
T Consensus 103 ~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~---~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 103 LNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIP---YFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCe---EEEEeCCCCCCHHHHHHHHHHHH
Confidence 3444455555443 68999999987642221 234567888888874 45778899999999888877654
No 30
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=76.02 E-value=17 Score=31.47 Aligned_cols=55 Identities=15% Similarity=0.060 Sum_probs=36.0
Q ss_pred cCCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHH
Q 010734 315 YGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 372 (502)
Q Consensus 315 fGvPvVVAINrF~tDT-~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a 372 (502)
.++|+||+.|+...-. ....+.+.++++..+.. +..+. ++-|+|-.+|=+.+++.
T Consensus 105 ~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 105 DDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIP-YIETS--AKTRQGVEEAFYTLVRE 160 (162)
T ss_pred CCCCEEEEEECcccccceecHHHHHHHHHHhCCe-EEEec--CCCCCCHHHHHHHHHHH
Confidence 5899999999965322 22344566777777874 43332 67778877776666543
No 31
>PRK15494 era GTPase Era; Provisional
Probab=75.96 E-value=20 Score=37.35 Aligned_cols=86 Identities=15% Similarity=0.144 Sum_probs=54.6
Q ss_pred HHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCC
Q 010734 308 HIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLD 387 (502)
Q Consensus 308 HIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~ 387 (502)
.++.++.++.|+|+++|+..-.. ++++.+.+++.+.+.. ..+-..=++=|+|-.+|-+.+.+.+..+ .++|+.+
T Consensus 152 il~~l~~~~~p~IlViNKiDl~~-~~~~~~~~~l~~~~~~-~~i~~iSAktg~gv~eL~~~L~~~l~~~----~~~~~~~ 225 (339)
T PRK15494 152 ILDKLRSLNIVPIFLLNKIDIES-KYLNDIKAFLTENHPD-SLLFPISALSGKNIDGLLEYITSKAKIS----PWLYAED 225 (339)
T ss_pred HHHHHHhcCCCEEEEEEhhcCcc-ccHHHHHHHHHhcCCC-cEEEEEeccCccCHHHHHHHHHHhCCCC----CCCCCCC
Confidence 35556677899999999976533 2456677777765531 2222334677889888888888776543 3566655
Q ss_pred C----CHHHHHHHHHH
Q 010734 388 V----SIKEKIDTIAR 399 (502)
Q Consensus 388 ~----sI~eKIe~IA~ 399 (502)
+ |.+.-+..|-|
T Consensus 226 ~~td~~~~~~~~eiiR 241 (339)
T PRK15494 226 DITDLPMRFIAAEITR 241 (339)
T ss_pred CCCCCCHHHHHHHHHH
Confidence 4 55555555544
No 32
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=75.21 E-value=62 Score=32.77 Aligned_cols=92 Identities=21% Similarity=0.325 Sum_probs=53.1
Q ss_pred hhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcC-CCeEEE---cCccccCccc---hhHHHHHHHHHhhcCCCCccccCC
Q 010734 313 KAYGANVVVAVNMFATDSKAELNAVRNAAMAAG-AFDAVV---CSHHAHGGKG---AVDLGIAVQRACENVTQPLKFLYP 385 (502)
Q Consensus 313 ~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~G-v~~~~v---s~~wakGGeG---a~eLA~~Vv~a~e~~~~~fk~LY~ 385 (502)
++++.|++|-|+-. +.+++....+.+++.| +..+.+ |-+...||.. -.++..++++++.+.. ++-....
T Consensus 88 ~~~~~p~i~si~g~---~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vK 163 (301)
T PRK07259 88 EEFDTPIIANVAGS---TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVK 163 (301)
T ss_pred hccCCcEEEEeccC---CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEE
Confidence 35789999988754 5788888888899998 754434 3233333321 1356667777665421 2222222
Q ss_pred CCCCHHHHHHHHHH---HhCCCceeeC
Q 010734 386 LDVSIKEKIDTIAR---SYGASGVEYS 409 (502)
Q Consensus 386 ~~~sI~eKIe~IA~---IYGA~~V~fS 409 (502)
...+++ .+..+|+ -.|++.|+++
T Consensus 164 l~~~~~-~~~~~a~~l~~~G~d~i~~~ 189 (301)
T PRK07259 164 LTPNVT-DIVEIAKAAEEAGADGLSLI 189 (301)
T ss_pred cCCCch-hHHHHHHHHHHcCCCEEEEE
Confidence 222233 3445554 4788888763
No 33
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=74.36 E-value=16 Score=38.62 Aligned_cols=72 Identities=21% Similarity=0.251 Sum_probs=46.6
Q ss_pred cchhccccccccCCCC-CCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcEE-
Q 010734 243 GAEKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVV- 320 (502)
Q Consensus 243 GaEKF~dIkcr~~gl~-P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvV- 320 (502)
|-|+|+ ++-..|+. .|++++|.-.+- |.. ..-.+|+..++.+|+|.+
T Consensus 84 Gh~~f~--~~~~~~~~~~D~~ilVvda~~-----g~~------------------------~qt~e~l~~~~~~gi~~iI 132 (394)
T TIGR00485 84 GHADYV--KNMITGAAQMDGAILVVSATD-----GPM------------------------PQTREHILLARQVGVPYIV 132 (394)
T ss_pred chHHHH--HHHHHHHhhCCEEEEEEECCC-----CCc------------------------HHHHHHHHHHHHcCCCEEE
Confidence 446775 44455554 889888877541 211 234578999999999976
Q ss_pred EEecCCCCCCHHHH-----HHHHHHHHHcC
Q 010734 321 VAVNMFATDSKAEL-----NAVRNAAMAAG 345 (502)
Q Consensus 321 VAINrF~tDT~~Ei-----~~v~~~c~~~G 345 (502)
|++|+..--+++|. +.+++++++.+
T Consensus 133 vvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 133 VFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred EEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 68999865333332 24667777766
No 34
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=74.16 E-value=8 Score=41.01 Aligned_cols=115 Identities=20% Similarity=0.198 Sum_probs=70.0
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCcc
Q 010734 304 NLARHIANTKAYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLK 381 (502)
Q Consensus 304 NL~kHIeNi~~fGvPvVVAINrF~tDT~~E--i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk 381 (502)
.|+.+|+-+.++|..+.|++|-|..+.+.| .+.+.+ ..+.|+..+++++. |.+.|+++. -.++.
T Consensus 50 ~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~-l~e~GvDaviv~Dp------g~i~l~~e~-------~p~l~ 115 (347)
T COG0826 50 DLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDR-LVELGVDAVIVADP------GLIMLARER-------GPDLP 115 (347)
T ss_pred HHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHH-HHHcCCCEEEEcCH------HHHHHHHHh-------CCCCc
Confidence 488899999999999999999999888777 444544 45699987777765 444444432 22344
Q ss_pred ccCCCCCCH--HHHHHHHHHHhCCCceeeCHHH-HHHHHHHHHC---------CCCCCCeeEee
Q 010734 382 FLYPLDVSI--KEKIDTIARSYGASGVEYSEEA-EKQIEMYTGQ---------GFSGLPICMAK 433 (502)
Q Consensus 382 ~LY~~~~sI--~eKIe~IA~IYGA~~V~fS~~A-~kqLk~ie~~---------Gf~~LPVCmAK 433 (502)
.-+....++ .++++--.+. |+..|..+.+- ..+|+++.+. -+|.||+...+
T Consensus 116 ih~S~q~~v~N~~~~~f~~~~-G~~rvVl~rEls~~ei~~i~~~~~~veiEvfVhGalcia~Sg 178 (347)
T COG0826 116 IHVSTQANVTNAETAKFWKEL-GAKRVVLPRELSLEEIKEIKEQTPDVEIEVFVHGALCIAYSG 178 (347)
T ss_pred EEEeeeEecCCHHHHHHHHHc-CCEEEEeCccCCHHHHHHHHHhCCCceEEEEEecchhhccCc
Confidence 444443333 2333333332 47777766543 3344444432 35666655554
No 35
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=74.07 E-value=8.9 Score=38.75 Aligned_cols=102 Identities=15% Similarity=0.230 Sum_probs=63.6
Q ss_pred HHHHHHHhcCCCCeEEeeccccccccchhccccccccCCCCCCeEE---EEeeeh-hhhhcCCCCCccCCCCCchhccc-
Q 010734 218 ADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAV---IVATIR-ALKMHGGGPQVVAGKPLDHAYLN- 292 (502)
Q Consensus 218 Atk~alkla~~~dyvVTEAGFgaDlGaEKF~dIkcr~~gl~P~a~V---lVaTvR-ALK~HGG~~~~~~~~pl~~~l~~- 292 (502)
-.++.-|..--.||+||-..|.++. .++|++ .||..|+..-.++ -+.+.+ +++|.- .+ |-.+|+++.+
T Consensus 147 ~~~L~~K~~aGA~f~iTQ~~fd~~~-~~~~~~-~~~~~gi~~PIi~Gi~p~~s~k~~~~~~~-~~----Gv~vP~~~~~~ 219 (272)
T TIGR00676 147 IENLKRKVDAGADYAITQLFFDNDD-YYRFVD-RCRAAGIDVPIIPGIMPITNFKQLLRFAE-RC----GAEIPAWLVKR 219 (272)
T ss_pred HHHHHHHHHcCCCeEeeccccCHHH-HHHHHH-HHHHcCCCCCEecccCCcCCHHHHHHHHh-cc----CCCCCHHHHHH
Confidence 3456666643348999999999987 788888 8999998743222 134445 344542 22 2234554433
Q ss_pred -----ccHHHH-HHHHhhHHHHHHHHhhcCCc--EEEEecCC
Q 010734 293 -----ENVALV-EAGCVNLARHIANTKAYGAN--VVVAVNMF 326 (502)
Q Consensus 293 -----eNl~AL-~~G~~NL~kHIeNi~~fGvP--vVVAINrF 326 (502)
++.+++ +.|.+--...++.++.+|++ =+.++|++
T Consensus 220 l~~~~~~~~~~~~~gi~~~~~~~~~l~~~g~~GiHl~t~n~~ 261 (272)
T TIGR00676 220 LEKYDDDPEEVRAVGIEYATDQCEDLIAEGVPGIHFYTLNRA 261 (272)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEcCCCCH
Confidence 233333 46777777788888877777 45556665
No 36
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=73.47 E-value=27 Score=37.43 Aligned_cols=69 Identities=14% Similarity=-0.011 Sum_probs=45.0
Q ss_pred cCCcEEEEecCCCCCCHHHHH-HHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCCC
Q 010734 315 YGANVVVAVNMFATDSKAELN-AVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDV 388 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~Ei~-~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~~ 388 (502)
.+.|+||++|+----..+|+. .+.+++++.+.. ..+...-+.=|+|-.+|.+.+.+.+.+. .++|+.++
T Consensus 274 ~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~-~~Vi~ISA~tg~GIdeLl~~I~~~L~~~----~~~~~~~~ 343 (390)
T PRK12298 274 AEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWE-GPVYLISAASGLGVKELCWDLMTFIEEN----PREEAEEA 343 (390)
T ss_pred cCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCC-CCEEEEECCCCcCHHHHHHHHHHHhhhC----cccCCccc
Confidence 468999999997765556654 445555554531 1122344566899999999999988653 45566543
No 37
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=73.18 E-value=12 Score=38.71 Aligned_cols=56 Identities=16% Similarity=0.132 Sum_probs=41.3
Q ss_pred hhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccC
Q 010734 303 VNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHG 358 (502)
Q Consensus 303 ~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakG 358 (502)
....+-|+.+++.|+++.|-.--|..++.+|+..+.++++++|+..+.++-.+..|
T Consensus 149 ~~~l~~I~~l~~~G~~v~v~~tv~~~~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~ 204 (318)
T TIGR03470 149 DRAVEAIREAKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLGVDGMTISPGYAYE 204 (318)
T ss_pred HHHHHHHHHHHHCCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCcccc
Confidence 33444455556678887665555778999999999999999999767777666544
No 38
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=72.93 E-value=4.1 Score=44.15 Aligned_cols=73 Identities=22% Similarity=0.350 Sum_probs=47.4
Q ss_pred cchhccccccccCCCC-CCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHH---hhHHHHHHHHhhcCCc
Q 010734 243 GAEKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGC---VNLARHIANTKAYGAN 318 (502)
Q Consensus 243 GaEKF~dIkcr~~gl~-P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~---~NL~kHIeNi~~fGvP 318 (502)
|-++| +++..+|+. .|++|||.-.. + |+. ++|| ....+|+.-++.+|+|
T Consensus 94 Gh~~f--~~~~~~g~~~aD~ailVVda~--~---G~~--------------------e~~~~~~~qT~eh~~~~~~~gi~ 146 (446)
T PTZ00141 94 GHRDF--IKNMITGTSQADVAILVVAST--A---GEF--------------------EAGISKDGQTREHALLAFTLGVK 146 (446)
T ss_pred ChHHH--HHHHHHhhhhcCEEEEEEEcC--C---Cce--------------------ecccCCCccHHHHHHHHHHcCCC
Confidence 34566 467777776 88999987732 1 221 1122 3678899999999999
Q ss_pred E-EEEecCCCCC----CHHHHHHHHHHHH
Q 010734 319 V-VVAVNMFATD----SKAELNAVRNAAM 342 (502)
Q Consensus 319 v-VVAINrF~tD----T~~Ei~~v~~~c~ 342 (502)
. ||+||+-..+ +++.++.+.+..+
T Consensus 147 ~iiv~vNKmD~~~~~~~~~~~~~i~~~i~ 175 (446)
T PTZ00141 147 QMIVCINKMDDKTVNYSQERYDEIKKEVS 175 (446)
T ss_pred eEEEEEEccccccchhhHHHHHHHHHHHH
Confidence 5 6999998632 3455555544433
No 39
>PRK00098 GTPase RsgA; Reviewed
Probab=72.47 E-value=33 Score=35.09 Aligned_cols=60 Identities=23% Similarity=0.243 Sum_probs=38.9
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCC-CCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHH
Q 010734 305 LARHIANTKAYGANVVVAVNMFAT-DSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGI 367 (502)
Q Consensus 305 L~kHIeNi~~fGvPvVVAINrF~t-DT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~ 367 (502)
+.+-+..++..++|+|+++|+-.- +..++++...+..++.|.. +.... ++=|+|-.+|.+
T Consensus 100 idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~-v~~vS--A~~g~gi~~L~~ 160 (298)
T PRK00098 100 LDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYD-VLELS--AKEGEGLDELKP 160 (298)
T ss_pred HHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCe-EEEEe--CCCCccHHHHHh
Confidence 456666677789999999999765 3455666666777778874 33222 234566555543
No 40
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=72.16 E-value=66 Score=31.93 Aligned_cols=127 Identities=11% Similarity=0.035 Sum_probs=74.6
Q ss_pred cccccHHHHHHHHhhHHHHHHHHhh-cCCcEE--EEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCc-cccCccchhHH
Q 010734 290 YLNENVALVEAGCVNLARHIANTKA-YGANVV--VAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSH-HAHGGKGAVDL 365 (502)
Q Consensus 290 l~~eNl~AL~~G~~NL~kHIeNi~~-fGvPvV--VAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~-wakGGeGa~eL 365 (502)
+.+.+..+++.|+ ...++.+++ ..+|++ +-+|-|..+ .+ ...+.|++.|+..+.+-+. +. +.+-
T Consensus 50 i~~~~~~a~~~g~---~~~v~~vr~~~~~Pl~lM~y~n~~~~~-~~---~~i~~~~~~Gadgvii~dlp~e-----~~~~ 117 (244)
T PRK13125 50 IRKSHRKVKGLDI---WPLLEEVRKDVSVPIILMTYLEDYVDS-LD---NFLNMARDVGADGVLFPDLLID-----YPDD 117 (244)
T ss_pred HHHHHHHHHHcCc---HHHHHHHhccCCCCEEEEEecchhhhC-HH---HHHHHHHHcCCCEEEECCCCCC-----cHHH
Confidence 4455677888888 567888887 688975 455877433 23 3345667799974444321 22 1122
Q ss_pred HHHHHHHhhcCCCCccccCCCCCCHHHHHHHHHH-----Hh----CCCceeeCHHHHHHHHHHHHCCCCCCCee
Q 010734 366 GIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-----SY----GASGVEYSEEAEKQIEMYTGQGFSGLPIC 430 (502)
Q Consensus 366 A~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~-----IY----GA~~V~fS~~A~kqLk~ie~~Gf~~LPVC 430 (502)
.+..++.+.+..-..=++...+.|+ +.++.++. +| +..+-.|.+...++++++.++ .++.||+
T Consensus 118 ~~~~~~~~~~~Gl~~~~~v~p~T~~-e~l~~~~~~~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~-~~~~~i~ 189 (244)
T PRK13125 118 LEKYVEIIKNKGLKPVFFTSPKFPD-LLIHRLSKLSPLFIYYGLRPATGVPLPVSVERNIKRVRNL-VGNKYLV 189 (244)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCH-HHHHHHHHhCCCEEEEEeCCCCCCCchHHHHHHHHHHHHh-cCCCCEE
Confidence 4455666654222233445555554 34565553 32 223447889999999999987 3345655
No 41
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=71.66 E-value=26 Score=31.82 Aligned_cols=87 Identities=14% Similarity=0.101 Sum_probs=59.5
Q ss_pred HHHHHhhHHHHHHHHhhcCCcEEEEe----cCCCCCCHH--------HHHHHHHHHHHcCCCeEEEcCccccCccchh--
Q 010734 298 VEAGCVNLARHIANTKAYGANVVVAV----NMFATDSKA--------ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAV-- 363 (502)
Q Consensus 298 L~~G~~NL~kHIeNi~~fGvPvVVAI----NrF~tDT~~--------Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~-- 363 (502)
-++.+..+++.|+-.+.+|.+.|+.- +....++.+ -++.+.+.+++.|+. +++-++.....+...
T Consensus 66 r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-i~lE~~~~~~~~~~~~~ 144 (213)
T PF01261_consen 66 REEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVR-IALENHPGPFSETPFSV 144 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSE-EEEE-SSSSSSSEESSH
T ss_pred hHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcce-EEEecccCccccchhhH
Confidence 78888999999999999999998877 345555544 355666778888995 777777666665552
Q ss_pred HHHHHHHHHhhcCCCCccccCCCC
Q 010734 364 DLGIAVQRACENVTQPLKFLYPLD 387 (502)
Q Consensus 364 eLA~~Vv~a~e~~~~~fk~LY~~~ 387 (502)
+-+..+++.+.. .++..+||..
T Consensus 145 ~~~~~~l~~~~~--~~~~i~~D~~ 166 (213)
T PF01261_consen 145 EEIYRLLEEVDS--PNVGICFDTG 166 (213)
T ss_dssp HHHHHHHHHHTT--TTEEEEEEHH
T ss_pred HHHHHHHhhcCC--CcceEEEehH
Confidence 333444454432 3488887753
No 42
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=71.36 E-value=39 Score=34.98 Aligned_cols=150 Identities=17% Similarity=0.261 Sum_probs=91.2
Q ss_pred eehhhh--hcCCCCCccCCCCCc------hhcccccHHHHHHHHhhHHHHHHHHhhc-----CCcEEEE--ecC-CCCCC
Q 010734 267 TIRALK--MHGGGPQVVAGKPLD------HAYLNENVALVEAGCVNLARHIANTKAY-----GANVVVA--VNM-FATDS 330 (502)
Q Consensus 267 TvRALK--~HGG~~~~~~~~pl~------~~l~~eNl~AL~~G~~NL~kHIeNi~~f-----GvPvVVA--INr-F~tDT 330 (502)
|+..+| --+|+....+|-|-. ..+...+..||+.|+ .+++-.|-++.+ .+|+|.- .|- |.-
T Consensus 33 s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~-t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~-- 109 (265)
T COG0159 33 SLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGV-TLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNY-- 109 (265)
T ss_pred HHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHh--
Confidence 344444 345555555553332 245667889999887 555555555443 3455542 343 322
Q ss_pred HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCCCCHHHHHHHHHH-----Hh----
Q 010734 331 KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-----SY---- 401 (502)
Q Consensus 331 ~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~-----IY---- 401 (502)
=++...+.|++.|+..+.+-+. -.|.++.+.+.+++..=++-||-..+.| .+.+++|++ ||
T Consensus 110 --Gie~F~~~~~~~GvdGlivpDL-------P~ee~~~~~~~~~~~gi~~I~lvaPtt~-~~rl~~i~~~a~GFiY~vs~ 179 (265)
T COG0159 110 --GIEKFLRRAKEAGVDGLLVPDL-------PPEESDELLKAAEKHGIDPIFLVAPTTP-DERLKKIAEAASGFIYYVSR 179 (265)
T ss_pred --hHHHHHHHHHHcCCCEEEeCCC-------ChHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHhCCCcEEEEec
Confidence 2344667889999987777766 4678888888887533345566666544 234555544 44
Q ss_pred -CCCceeeC--HHHHHHHHHHHHCCCCCCCeeE
Q 010734 402 -GASGVEYS--EEAEKQIEMYTGQGFSGLPICM 431 (502)
Q Consensus 402 -GA~~V~fS--~~A~kqLk~ie~~Gf~~LPVCm 431 (502)
|..++.-. ....+.++++++. .++|||.
T Consensus 180 ~GvTG~~~~~~~~~~~~v~~vr~~--~~~Pv~v 210 (265)
T COG0159 180 MGVTGARNPVSADVKELVKRVRKY--TDVPVLV 210 (265)
T ss_pred ccccCCCcccchhHHHHHHHHHHh--cCCCeEE
Confidence 77776643 3478888888875 4889996
No 43
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=70.63 E-value=40 Score=32.98 Aligned_cols=102 Identities=11% Similarity=0.031 Sum_probs=62.4
Q ss_pred cccHHHHHHHHhhHHHHHHHHhhcCCcEEEEec--CC-CCCCH-------HHHHHHHHHHHHcCCCeEEEcCccccCccc
Q 010734 292 NENVALVEAGCVNLARHIANTKAYGANVVVAVN--MF-ATDSK-------AELNAVRNAAMAAGAFDAVVCSHHAHGGKG 361 (502)
Q Consensus 292 ~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAIN--rF-~tDT~-------~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeG 361 (502)
.++.+.-++.+.++++.|+..+.+|.+.|+.-- .| ..+++ +.++.+.+.+++.|+. .++-++-..-. .
T Consensus 83 ~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lE~~~~~~~-~ 160 (284)
T PRK13210 83 SRDPATRERALEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVM-LAVEIMDTPFM-N 160 (284)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCE-EEEEecCcccc-C
Confidence 355667788899999999999999999998521 01 12333 2367788888999995 77666521111 1
Q ss_pred hhHHHHHHHHHhhcCCCCccccCCC------CCCHHHHHHHH
Q 010734 362 AVDLGIAVQRACENVTQPLKFLYPL------DVSIKEKIDTI 397 (502)
Q Consensus 362 a~eLA~~Vv~a~e~~~~~fk~LY~~------~~sI~eKIe~I 397 (502)
..+-+..+++.+.. ..+...||. ..++.+-+++.
T Consensus 161 ~~~~~~~l~~~v~~--~~~~~~~D~~h~~~~~~~~~~~l~~~ 200 (284)
T PRK13210 161 SISKWKKWDKEIDS--PWLTVYPDVGNLSAWGNDVWSELKLG 200 (284)
T ss_pred CHHHHHHHHHHcCC--CceeEEecCChhhhcCCCHHHHHHHh
Confidence 12223345555532 346666655 33455555544
No 44
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=70.32 E-value=7.2 Score=36.14 Aligned_cols=59 Identities=12% Similarity=-0.042 Sum_probs=39.8
Q ss_pred hcCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 314 AYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 314 ~fGvPvVVAINrF~tDT~~E--i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
.-++|++|+.|+..-.++.+ .+...+++++.|.. +..+ =++=|+|-.+|-+.+++.+..
T Consensus 104 ~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~-~~e~--Sa~~~~~v~~l~~~l~~~~~~ 164 (191)
T cd04112 104 QEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVP-FMET--SAKTGLNVELAFTAVAKELKH 164 (191)
T ss_pred CCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCe-EEEE--eCCCCCCHHHHHHHHHHHHHH
Confidence 34799999999976543222 23455666777774 4444 345678999998888877754
No 45
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=70.28 E-value=11 Score=43.78 Aligned_cols=83 Identities=20% Similarity=0.315 Sum_probs=53.8
Q ss_pred HhhcCCcEEEEecCCCCCCHHHHH-HHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCCCCH
Q 010734 312 TKAYGANVVVAVNMFATDSKAELN-AVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSI 390 (502)
Q Consensus 312 i~~fGvPvVVAINrF~tDT~~Ei~-~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~~sI 390 (502)
+++.|+|+|+++|+-.-....+++ .+.++.++.|++ +.. .-+.-|+|-.+|.+.+.+..+.+ ...+.-|+. .+
T Consensus 108 l~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~p-Vvp--iSA~~g~GIdeL~~~I~~~~~~~-~~~~~~yp~--~l 181 (772)
T PRK09554 108 LLELGIPCIVALNMLDIAEKQNIRIDIDALSARLGCP-VIP--LVSTRGRGIEALKLAIDRHQANE-NVELVHYPQ--PL 181 (772)
T ss_pred HHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCC-EEE--EEeecCCCHHHHHHHHHHhhhcc-CCcccCCCH--HH
Confidence 455799999999997653332222 235566778985 433 34566788888888887765432 222344653 58
Q ss_pred HHHHHHHHH-H
Q 010734 391 KEKIDTIAR-S 400 (502)
Q Consensus 391 ~eKIe~IA~-I 400 (502)
++.|+.+.. +
T Consensus 182 e~~I~~l~~~L 192 (772)
T PRK09554 182 LNEADSLAKVM 192 (772)
T ss_pred HHHHHHHHHHh
Confidence 888888877 5
No 46
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=69.88 E-value=35 Score=33.68 Aligned_cols=96 Identities=14% Similarity=0.125 Sum_probs=59.4
Q ss_pred cccccHHHHHHHHhhHHHHHHHHhhcCCcEEEE-ecCCCCCCHHH--------HHHHHHHHHHcCCCeEEEcCccccCc-
Q 010734 290 YLNENVALVEAGCVNLARHIANTKAYGANVVVA-VNMFATDSKAE--------LNAVRNAAMAAGAFDAVVCSHHAHGG- 359 (502)
Q Consensus 290 l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVA-INrF~tDT~~E--------i~~v~~~c~~~Gv~~~~vs~~wakGG- 359 (502)
+..++-+.-++.+..+++.|+-.+.+|.+.||. ....+.++.++ +..+.+.+++.|+. +++-+++....
T Consensus 72 ~~~~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~-l~lEn~~~~~~~ 150 (279)
T cd00019 72 LASPDKEKREKSIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVV-IALETMAGQGNE 150 (279)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCE-EEEeCCCCCCCC
Confidence 335666778999999999999999999998776 22222222222 33344445567995 77777765531
Q ss_pred -cchhHHHHHHHHHhhcCCCCccccCCCC
Q 010734 360 -KGAVDLGIAVQRACENVTQPLKFLYPLD 387 (502)
Q Consensus 360 -eGa~eLA~~Vv~a~e~~~~~fk~LY~~~ 387 (502)
-...+-+..+++.+.. ...+..+||..
T Consensus 151 ~~~t~~~~~~li~~v~~-~~~~g~~lD~~ 178 (279)
T cd00019 151 IGSSFEELKEIIDLIKE-KPRVGVCIDTC 178 (279)
T ss_pred CCCCHHHHHHHHHhcCC-CCCeEEEEEhh
Confidence 2334455566666641 23466666543
No 47
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=69.49 E-value=62 Score=33.56 Aligned_cols=49 Identities=18% Similarity=0.097 Sum_probs=33.4
Q ss_pred HHHhhHHHHHHHHhh-cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEE
Q 010734 300 AGCVNLARHIANTKA-YGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVV 351 (502)
Q Consensus 300 ~G~~NL~kHIeNi~~-fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~v 351 (502)
.|.....++++.+++ +++|++|-|+- .+.+|...+.+.+++.|+..+.+
T Consensus 84 ~g~d~~~~~i~~~~~~~~~pvi~sI~g---~~~~e~~~~a~~~~~agad~iel 133 (334)
T PRK07565 84 VGPEEYLELIRRAKEAVDIPVIASLNG---SSAGGWVDYARQIEQAGADALEL 133 (334)
T ss_pred cCHHHHHHHHHHHHHhcCCcEEEEecc---CCHHHHHHHHHHHHHcCCCEEEE
Confidence 345556677777755 68999998866 34567666777778889864444
No 48
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=68.94 E-value=22 Score=40.33 Aligned_cols=101 Identities=22% Similarity=0.246 Sum_probs=60.8
Q ss_pred cchhccccccccCCCC-CCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcE-E
Q 010734 243 GAEKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANV-V 320 (502)
Q Consensus 243 GaEKF~dIkcr~~gl~-P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPv-V 320 (502)
|-|+|. ++..+|+. .|++++|.-.. + |.. ..-..|++.++.+|+|. |
T Consensus 60 Ghe~fi--~~m~~g~~~~D~~lLVVda~----e-g~~------------------------~qT~ehl~il~~lgi~~iI 108 (614)
T PRK10512 60 GHEKFL--SNMLAGVGGIDHALLVVACD----D-GVM------------------------AQTREHLAILQLTGNPMLT 108 (614)
T ss_pred CHHHHH--HHHHHHhhcCCEEEEEEECC----C-CCc------------------------HHHHHHHHHHHHcCCCeEE
Confidence 345664 56666665 68888877643 1 110 23456778888899995 7
Q ss_pred EEecCCCCCCHHHHHH----HHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 321 VAVNMFATDSKAELNA----VRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 321 VAINrF~tDT~~Ei~~----v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
|++|+..--++++++. +++++++.|...+-+-.+=+.-|+|-.+|-+.+.+...
T Consensus 109 VVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 109 VALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred EEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhc
Confidence 9999987655555544 44455544531111222334457888888888776543
No 49
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=68.91 E-value=28 Score=29.08 Aligned_cols=59 Identities=10% Similarity=-0.040 Sum_probs=34.4
Q ss_pred HHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHH
Q 010734 308 HIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIA 368 (502)
Q Consensus 308 HIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~ 368 (502)
.+.+....++|++|++|+..--+++..+...+.....+-.. .-..=+..|+|-.+|-+.
T Consensus 100 ~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~sa~~~~gv~~~~~~ 158 (161)
T TIGR00231 100 EIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEP--IIPLSAETGKNIDSAFKI 158 (161)
T ss_pred HHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCc--eEEeecCCCCCHHHHHHH
Confidence 33333334899999999876544333444444444444322 223337888888777554
No 50
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=68.12 E-value=37 Score=30.91 Aligned_cols=100 Identities=17% Similarity=0.139 Sum_probs=59.4
Q ss_pred hhHHHHHHHHhhc---CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCC
Q 010734 303 VNLARHIANTKAY---GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQP 379 (502)
Q Consensus 303 ~NL~kHIeNi~~f---GvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~ 379 (502)
..+.+|++.+.+. ++|+++-.+-..+-+.+++..+.+.+++.|+.-+-.+..|..|+... +..+++.+.... +-.
T Consensus 97 ~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~~~~~-~~~~~i~~~~~~-~~~ 174 (201)
T cd00945 97 EEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGGGATV-EDVKLMKEAVGG-RVG 174 (201)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCH-HHHHHHHHhccc-CCc
Confidence 4667777777764 89988877744445678888877777889997565666666655443 444555555421 112
Q ss_pred ccccCCCCCCHHHHHHHHHH--HhCCCceeeC
Q 010734 380 LKFLYPLDVSIKEKIDTIAR--SYGASGVEYS 409 (502)
Q Consensus 380 fk~LY~~~~sI~eKIe~IA~--IYGA~~V~fS 409 (502)
|...-..+ ++ +.+.. ..||+++.++
T Consensus 175 v~~~gg~~-~~----~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 175 VKAAGGIK-TL----EDALAAIEAGADGIGTS 201 (201)
T ss_pred EEEECCCC-CH----HHHHHHHHhccceeecC
Confidence 33333333 22 22222 4588877653
No 51
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=67.95 E-value=26 Score=30.59 Aligned_cols=52 Identities=10% Similarity=-0.126 Sum_probs=33.0
Q ss_pred cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHH
Q 010734 315 YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAV 369 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~E--i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~V 369 (502)
.++|+||+.|+..-..+.+ .+...+++++.|.. +..+... =|+|-.+|-+.+
T Consensus 105 ~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~--~~~~v~~l~~~l 158 (162)
T cd04106 105 GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLP-LFRTSVK--DDFNVTELFEYL 158 (162)
T ss_pred CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCe-EEEEECC--CCCCHHHHHHHH
Confidence 5899999999976533333 34556778888885 5444443 356665554444
No 52
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=67.62 E-value=17 Score=34.96 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=33.9
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCC--CCCHHHHHHHHHHHHHcCC
Q 010734 304 NLARHIANTKAYGANVVVAVNMFA--TDSKAELNAVRNAAMAAGA 346 (502)
Q Consensus 304 NL~kHIeNi~~fGvPvVVAINrF~--tDT~~Ei~~v~~~c~~~Gv 346 (502)
...+-|+.++++|+++.|...-++ .|+++|++.+.+++++.|.
T Consensus 144 ~v~~~i~~l~~~g~~~~v~~vv~~~~~~n~~ei~~l~~~~~~l~~ 188 (235)
T TIGR02493 144 PTLDFAKYLAKRNKPIWIRYVLVPGYTDSEEDIEALAEFVKTLPN 188 (235)
T ss_pred HHHHHHHHHHhCCCcEEEEEeeeCCcCCCHHHHHHHHHHHHhCCC
Confidence 344556667778999877666666 6899999999999999994
No 53
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=65.89 E-value=40 Score=32.59 Aligned_cols=127 Identities=14% Similarity=0.198 Sum_probs=78.0
Q ss_pred CCcEEEEecCCCCCCH------HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccC-C--C
Q 010734 316 GANVVVAVNMFATDSK------AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLY-P--L 386 (502)
Q Consensus 316 GvPvVVAINrF~tDT~------~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY-~--~ 386 (502)
|..|+..++..+.+.+ .+++.+++.|+++|++ ..+.+....-.+=..+|.+.+.+..++ .+..+. - .
T Consensus 23 G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgip-l~~i~~~~~~e~~~~~l~~~l~~~~~~---g~~~vv~G~i~ 98 (194)
T cd01994 23 GHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIP-LIRIEISGEEEDEVEDLKELLRKLKEE---GVDAVVFGAIL 98 (194)
T ss_pred CCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCc-EEEEeCCCCchHHHHHHHHHHHHHHHc---CCCEEEECccc
Confidence 5555544444444433 3889999999999996 444443222222335666666665433 233222 1 1
Q ss_pred CCCHHHHHHHHHHHhCCCcee--eCHHHHHHHHHHHHCCCCCCCeeEeecCCCCCCCCCCCCCCCC
Q 010734 387 DVSIKEKIDTIARSYGASGVE--YSEEAEKQIEMYTGQGFSGLPICMAKTQYSFSHNAAEKGAPTG 450 (502)
Q Consensus 387 ~~sI~eKIe~IA~IYGA~~V~--fS~~A~kqLk~ie~~Gf~~LPVCmAKTqySlSdDp~l~g~P~g 450 (502)
.+-.++.++.+|.=-|-.-+. |-...++=++.+-+.||.-.=||++...+ |++.+|+.=+
T Consensus 99 sd~~~~~~e~~~~~~gl~~~~PLW~~~~~~ll~e~~~~g~~~~iv~v~~~~L----~~~~lG~~~~ 160 (194)
T cd01994 99 SEYQRTRVERVCERLGLEPLAPLWGRDQEELLREMIEAGFKAIIIKVAAEGL----DESWLGREID 160 (194)
T ss_pred cHHHHHHHHHHHHHcCCEEEecccCCCHHHHHHHHHHcCCeEEEEEeccCCC----CHHHCCCCcc
Confidence 245788999999833554443 44445566788888999988888887653 4788887755
No 54
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=65.41 E-value=11 Score=38.62 Aligned_cols=151 Identities=19% Similarity=0.256 Sum_probs=86.6
Q ss_pred eehhhhh--cCCCCCccCCCCCc------hhcccccHHHHHHHHhhHHHHH---HHHh-h-cCCcEEEE--ecCCCCCCH
Q 010734 267 TIRALKM--HGGGPQVVAGKPLD------HAYLNENVALVEAGCVNLARHI---ANTK-A-YGANVVVA--VNMFATDSK 331 (502)
Q Consensus 267 TvRALK~--HGG~~~~~~~~pl~------~~l~~eNl~AL~~G~~NL~kHI---eNi~-~-fGvPvVVA--INrF~tDT~ 331 (502)
|+++++. .+|+.-..+|-|-. .-+.+-+..||+.|+ |+.+=+ +.++ + ..+|+|+- .|-+ -.
T Consensus 26 ~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~-~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i---~~ 101 (259)
T PF00290_consen 26 TLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGF-TLEKIFELVKEIRKKEPDIPIVLMTYYNPI---FQ 101 (259)
T ss_dssp HHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT---HHHHHHHHHHHHHHCTSSEEEEEE-HHHH---HH
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCC-CHHHHHHHHHHHhccCCCCCEEEEeeccHH---hc
Confidence 3444444 45655555553322 245567788999998 555444 5555 3 45776653 2211 01
Q ss_pred HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCCCCHHHHHHHHHH-----Hh-----
Q 010734 332 AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-----SY----- 401 (502)
Q Consensus 332 ~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~-----IY----- 401 (502)
--++...+.|++.|+..+.+-+.= .|-++.+.++|++..=.+-++-..+ +-.++|+.|++ ||
T Consensus 102 ~G~e~F~~~~~~aGvdGlIipDLP-------~ee~~~~~~~~~~~gl~~I~lv~p~-t~~~Ri~~i~~~a~gFiY~vs~~ 173 (259)
T PF00290_consen 102 YGIERFFKEAKEAGVDGLIIPDLP-------PEESEELREAAKKHGLDLIPLVAPT-TPEERIKKIAKQASGFIYLVSRM 173 (259)
T ss_dssp H-HHHHHHHHHHHTEEEEEETTSB-------GGGHHHHHHHHHHTT-EEEEEEETT-S-HHHHHHHHHH-SSEEEEESSS
T ss_pred cchHHHHHHHHHcCCCEEEEcCCC-------hHHHHHHHHHHHHcCCeEEEEECCC-CCHHHHHHHHHhCCcEEEeeccC
Confidence 235566788899999777776642 2455677777765222233444433 45667777774 55
Q ss_pred CCCce--eeCHHHHHHHHHHHHCCCCCCCeeE
Q 010734 402 GASGV--EYSEEAEKQIEMYTGQGFSGLPICM 431 (502)
Q Consensus 402 GA~~V--~fS~~A~kqLk~ie~~Gf~~LPVCm 431 (502)
|..+. .+++...+.++++++.. ++|||+
T Consensus 174 GvTG~~~~~~~~l~~~i~~ik~~~--~~Pv~v 203 (259)
T PF00290_consen 174 GVTGSRTELPDELKEFIKRIKKHT--DLPVAV 203 (259)
T ss_dssp SSSSTTSSCHHHHHHHHHHHHHTT--SS-EEE
T ss_pred CCCCCcccchHHHHHHHHHHHhhc--CcceEE
Confidence 33333 47788999999999985 999997
No 55
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=65.16 E-value=1e+02 Score=27.47 Aligned_cols=107 Identities=16% Similarity=0.180 Sum_probs=56.3
Q ss_pred chHHHHHHHHHhcCCCCeEEeecccccccc---chhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhc
Q 010734 214 SSIVADKIALKLVGPGGFVVTEAGFGADIG---AEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAY 290 (502)
Q Consensus 214 nSviAtk~alkla~~~dyvVTEAGFgaDlG---aEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l 290 (502)
.+.++.++.-... ++-|+-.|++-+.- .+.+-. -....+||.|||-. |.... .
T Consensus 23 ~~~l~~~l~~~~~---~~~v~n~g~~G~~~~~~~~~l~~---~~~~~~pd~v~i~~---------G~ND~---------~ 78 (177)
T cd01822 23 PALLQKRLDARGI---DVTVINAGVSGDTTAGGLARLPA---LLAQHKPDLVILEL---------GGNDG---------L 78 (177)
T ss_pred HHHHHHHHHHhCC---CeEEEecCcCCcccHHHHHHHHH---HHHhcCCCEEEEec---------cCccc---------c
Confidence 3455555553333 67787777764432 233221 12346899777632 32211 1
Q ss_pred ccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCC----CHHH-HHHHHHHHHHcCCC
Q 010734 291 LNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATD----SKAE-LNAVRNAAMAAGAF 347 (502)
Q Consensus 291 ~~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tD----T~~E-i~~v~~~c~~~Gv~ 347 (502)
...+.+..++ ||++=|+.+++.+.++|+.--..+.. ..++ -+.+++.|++.++.
T Consensus 79 ~~~~~~~~~~---~l~~li~~~~~~~~~vil~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 137 (177)
T cd01822 79 RGIPPDQTRA---NLRQMIETAQARGAPVLLVGMQAPPNYGPRYTRRFAAIYPELAEEYGVP 137 (177)
T ss_pred cCCCHHHHHH---HHHHHHHHHHHCCCeEEEEecCCCCccchHHHHHHHHHHHHHHHHcCCc
Confidence 1234455555 55555666777788877652112221 1223 35567788888985
No 56
>COG2229 Predicted GTPase [General function prediction only]
Probab=64.94 E-value=19 Score=35.58 Aligned_cols=88 Identities=23% Similarity=0.296 Sum_probs=51.2
Q ss_pred cchhc---cccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcE
Q 010734 243 GAEKF---MNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANV 319 (502)
Q Consensus 243 GaEKF---~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPv 319 (502)
|=||| ++++||- .=-++|+|-.-|--+.| ++++-|...|- +-+|+
T Consensus 77 Gq~RF~fm~~~l~~g---a~gaivlVDss~~~~~~------------------------a~~ii~f~~~~-----~~ip~ 124 (187)
T COG2229 77 GQERFKFMWEILSRG---AVGAIVLVDSSRPITFH------------------------AEEIIDFLTSR-----NPIPV 124 (187)
T ss_pred CcHHHHHHHHHHhCC---cceEEEEEecCCCcchH------------------------HHHHHHHHhhc-----cCCCE
Confidence 56664 7999997 34567777665522211 12222333322 22999
Q ss_pred EEEecC---CCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHH
Q 010734 320 VVAVNM---FATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLG 366 (502)
Q Consensus 320 VVAINr---F~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA 366 (502)
|||+|+ |...++++|..+.+.+. +.++ ++.. =+.=++|+.+.-
T Consensus 125 vVa~NK~DL~~a~ppe~i~e~l~~~~-~~~~-vi~~--~a~e~~~~~~~L 170 (187)
T COG2229 125 VVAINKQDLFDALPPEKIREALKLEL-LSVP-VIEI--DATEGEGARDQL 170 (187)
T ss_pred EEEeeccccCCCCCHHHHHHHHHhcc-CCCc-eeee--ecccchhHHHHH
Confidence 999998 56678888888888775 4553 3222 233455554433
No 57
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=64.82 E-value=35 Score=29.04 Aligned_cols=62 Identities=16% Similarity=0.083 Sum_probs=38.4
Q ss_pred HHHHHHhhcCCcEEEEecCCCCC-CHHHHHHHHHHHHHcC-CCeEEEcCccccCccchhHHHHHHH
Q 010734 307 RHIANTKAYGANVVVAVNMFATD-SKAELNAVRNAAMAAG-AFDAVVCSHHAHGGKGAVDLGIAVQ 370 (502)
Q Consensus 307 kHIeNi~~fGvPvVVAINrF~tD-T~~Ei~~v~~~c~~~G-v~~~~vs~~wakGGeGa~eLA~~Vv 370 (502)
+.++.++.++.|+++.+|+.... ++++++.+.+...+.. ...+..+. ++=|+|-.+|-+.+.
T Consensus 102 ~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~~~~~~~~l~~~l~ 165 (168)
T cd04163 102 FILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPIS--ALKGENVDELLEEIV 165 (168)
T ss_pred HHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEE--eccCCChHHHHHHHH
Confidence 34455666799999999998765 5677776666665543 22233222 445666666655543
No 58
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=64.36 E-value=1.6e+02 Score=29.58 Aligned_cols=97 Identities=21% Similarity=0.294 Sum_probs=54.3
Q ss_pred HHHHHhh-cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEE---cCccccCcc---chhHHHHHHHHHhhcCCCCc
Q 010734 308 HIANTKA-YGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVV---CSHHAHGGK---GAVDLGIAVQRACENVTQPL 380 (502)
Q Consensus 308 HIeNi~~-fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~v---s~~wakGGe---Ga~eLA~~Vv~a~e~~~~~f 380 (502)
++...++ .+.|++|-|+- .+.++.....+.+++.|+.-+.+ |-+...+|+ +..++..++++.+.+.. ++
T Consensus 80 ~~~~~~~~~~~p~ivsi~g---~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~-~~ 155 (296)
T cd04740 80 ELLPWLREFGTPVIASIAG---STVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT-DV 155 (296)
T ss_pred HHHHHhhcCCCcEEEEEec---CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc-CC
Confidence 3333333 68999998874 35678888888888888853333 222223222 34577778888876421 21
Q ss_pred cccCCCCCCHHHHHHHHHH---HhCCCceeeC
Q 010734 381 KFLYPLDVSIKEKIDTIAR---SYGASGVEYS 409 (502)
Q Consensus 381 k~LY~~~~sI~eKIe~IA~---IYGA~~V~fS 409 (502)
-.........+ .+..+|+ -.|++.|.++
T Consensus 156 Pv~vKl~~~~~-~~~~~a~~~~~~G~d~i~~~ 186 (296)
T cd04740 156 PVIVKLTPNVT-DIVEIARAAEEAGADGLTLI 186 (296)
T ss_pred CEEEEeCCCch-hHHHHHHHHHHcCCCEEEEE
Confidence 11111111122 2555555 4788888763
No 59
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=64.01 E-value=30 Score=38.05 Aligned_cols=99 Identities=9% Similarity=0.046 Sum_probs=60.0
Q ss_pred cchhccccccccCCCC-CCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCc-EE
Q 010734 243 GAEKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGAN-VV 320 (502)
Q Consensus 243 GaEKF~dIkcr~~gl~-P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvP-vV 320 (502)
|-|+| +|+-.+|+. .|++++|.... .|+.. .-..+|+..++.+|++ +|
T Consensus 126 GH~~f--i~~m~~g~~~~D~alLVVda~----~g~~~------------------------~qT~ehl~i~~~lgi~~iI 175 (460)
T PTZ00327 126 GHDIL--MATMLNGAAVMDAALLLIAAN----ESCPQ------------------------PQTSEHLAAVEIMKLKHII 175 (460)
T ss_pred CHHHH--HHHHHHHHhhCCEEEEEEECC----CCccc------------------------hhhHHHHHHHHHcCCCcEE
Confidence 44666 356667766 78899888754 12211 1225788888889997 68
Q ss_pred EEecCCCCCCHHHHHHHHHHHHH-------cCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 321 VAVNMFATDSKAELNAVRNAAMA-------AGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 321 VAINrF~tDT~~Ei~~v~~~c~~-------~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
|+||+-.--++++++.+.+..++ .++. +. .+=+.=|+|-.+|-+.+.+.+.
T Consensus 176 VvlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~-ii--pVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 176 ILQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAP-II--PISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred EEEecccccCHHHHHHHHHHHHHHHHhhccCCCe-EE--EeeCCCCCCHHHHHHHHHhhCC
Confidence 89999765445554444333332 2332 22 2334557888777777766554
No 60
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=63.79 E-value=47 Score=29.64 Aligned_cols=68 Identities=18% Similarity=0.112 Sum_probs=43.9
Q ss_pred HhhHHHHHHHHhhc--CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 302 CVNLARHIANTKAY--GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 302 ~~NL~kHIeNi~~f--GvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
+.++.+.++.++++ ++|++|+.|+-.-+. ++.+...+++++.+.. +.. .=++=|+|-.+|-+.+++.+
T Consensus 88 ~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~-~~~--~Sa~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 88 YKNLSKWYEELREYRPEIPCIVVANKIDLDP-SVTQKKFNFAEKHNLP-LYY--VSAADGTNVVKLFQDAIKLA 157 (161)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECccCch-hHHHHHHHHHHHcCCe-EEE--EeCCCCCCHHHHHHHHHHHH
Confidence 44555666666654 899999999966432 2233445667767764 332 34567788888887777654
No 61
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=63.54 E-value=25 Score=36.68 Aligned_cols=81 Identities=12% Similarity=0.111 Sum_probs=61.0
Q ss_pred ehhhhhcCCCCCccCCCCCchhcccccHHHHHHH--HhhHHHHHHHHhhcCCcEEEE--ecCCCCCCHHHHHHHHHHHHH
Q 010734 268 IRALKMHGGGPQVVAGKPLDHAYLNENVALVEAG--CVNLARHIANTKAYGANVVVA--VNMFATDSKAELNAVRNAAMA 343 (502)
Q Consensus 268 vRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G--~~NL~kHIeNi~~fGvPvVVA--INrF~tDT~~Ei~~v~~~c~~ 343 (502)
++.||-. |+....+| .+....+-++.+.++ ++...+-|++++++|++.|.+ |=-+|..|.+++....+++.+
T Consensus 103 l~~l~~~-Gv~risiG---vqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~~~~ 178 (360)
T TIGR00539 103 CKGLKGA-GINRLSLG---VQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKLAKE 178 (360)
T ss_pred HHHHHHc-CCCEEEEe---cccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHHHHc
Confidence 4677776 57776666 355666777777553 677888899999999975543 566899999999999999999
Q ss_pred cCCCeEEEc
Q 010734 344 AGAFDAVVC 352 (502)
Q Consensus 344 ~Gv~~~~vs 352 (502)
+|+..+.+.
T Consensus 179 l~~~~is~y 187 (360)
T TIGR00539 179 LPINHLSAY 187 (360)
T ss_pred cCCCEEEee
Confidence 998644443
No 62
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=63.43 E-value=1.8e+02 Score=30.26 Aligned_cols=101 Identities=19% Similarity=0.183 Sum_probs=48.0
Q ss_pred HHHHHHHHhhcCCcEEEEecCCC----CCCHHHHHHHHHHHHHcCCCeEEEcCc---cccCc------cchhHHHHHHHH
Q 010734 305 LARHIANTKAYGANVVVAVNMFA----TDSKAELNAVRNAAMAAGAFDAVVCSH---HAHGG------KGAVDLGIAVQR 371 (502)
Q Consensus 305 L~kHIeNi~~fGvPvVVAINrF~----tDT~~Ei~~v~~~c~~~Gv~~~~vs~~---wakGG------eGa~eLA~~Vv~ 371 (502)
..+.++..+.+++|++|-|+... .+..+|+..+.+.+.. ++. +..-+. -.+|+ +-..++.++|.+
T Consensus 117 ~~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~-~ad-~ielN~scP~~~g~~~~~~~~~~~~iv~av~~ 194 (327)
T cd04738 117 VAKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGP-YAD-YLVVNVSSPNTPGLRDLQGKEALRELLTAVKE 194 (327)
T ss_pred HHHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHh-hCC-EEEEECCCCCCCccccccCHHHHHHHHHHHHH
Confidence 33444444447899999997775 2334555544444432 243 322222 22232 223344455555
Q ss_pred Hhhc----CCCCccccCCCCCCHHHHHHHHHH-H--hCCCceeeCH
Q 010734 372 ACEN----VTQPLKFLYPLDVSIKEKIDTIAR-S--YGASGVEYSE 410 (502)
Q Consensus 372 a~e~----~~~~fk~LY~~~~sI~eKIe~IA~-I--YGA~~V~fS~ 410 (502)
.+.. .|=..|.- .+.+. +-+..+|+ . .|++.|+.+.
T Consensus 195 ~~~~~~~~~Pv~vKl~--~~~~~-~~~~~ia~~l~~aGad~I~~~n 237 (327)
T cd04738 195 ERNKLGKKVPLLVKIA--PDLSD-EELEDIADVALEHGVDGIIATN 237 (327)
T ss_pred HHhhcccCCCeEEEeC--CCCCH-HHHHHHHHHHHHcCCcEEEEEC
Confidence 4431 11112221 22333 34566776 3 5889888543
No 63
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=62.87 E-value=32 Score=30.37 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=36.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHH
Q 010734 316 GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 372 (502)
Q Consensus 316 GvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a 372 (502)
+.|+||++|+-..-+..++....++.+..+.. + -+.=++=|+|-.+|-+.+.+.
T Consensus 113 ~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~--~~~Sa~~~~gi~~l~~~l~~~ 166 (168)
T cd01897 113 NKPVIVVLNKIDLLTFEDLSEIEEEEELEGEE-V--LKISTLTEEGVDEVKNKACEL 166 (168)
T ss_pred cCCeEEEEEccccCchhhHHHHHHhhhhccCc-e--EEEEecccCCHHHHHHHHHHH
Confidence 89999999997765566665555665544443 2 233467788888887776654
No 64
>PLN00043 elongation factor 1-alpha; Provisional
Probab=62.30 E-value=10 Score=41.25 Aligned_cols=77 Identities=23% Similarity=0.383 Sum_probs=49.6
Q ss_pred cchhccccccccCCCC-CCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHH---hhHHHHHHHHhhcCCc
Q 010734 243 GAEKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGC---VNLARHIANTKAYGAN 318 (502)
Q Consensus 243 GaEKF~dIkcr~~gl~-P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~---~NL~kHIeNi~~fGvP 318 (502)
|-|+|+. ...+|+. +|++|||.-..- |.. +.|+ .-..+|+.-++.+|+|
T Consensus 94 Gh~df~~--~~~~g~~~aD~aIlVVda~~----G~~---------------------e~g~~~~~qT~eh~~~~~~~gi~ 146 (447)
T PLN00043 94 GHRDFIK--NMITGTSQADCAVLIIDSTT----GGF---------------------EAGISKDGQTREHALLAFTLGVK 146 (447)
T ss_pred CHHHHHH--HHHhhhhhccEEEEEEEccc----Cce---------------------ecccCCCchHHHHHHHHHHcCCC
Confidence 4566763 4455555 899999987542 221 1111 3567899999999996
Q ss_pred -EEEEecCCCCCC----HHH----HHHHHHHHHHcCC
Q 010734 319 -VVVAVNMFATDS----KAE----LNAVRNAAMAAGA 346 (502)
Q Consensus 319 -vVVAINrF~tDT----~~E----i~~v~~~c~~~Gv 346 (502)
.||++|+-...+ .+. ++.+++++++.|.
T Consensus 147 ~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~ 183 (447)
T PLN00043 147 QMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGY 183 (447)
T ss_pred cEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCC
Confidence 588999965321 111 5567777787784
No 65
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=62.23 E-value=37 Score=28.76 Aligned_cols=63 Identities=14% Similarity=0.155 Sum_probs=36.4
Q ss_pred hhHHHHHHHHhh---cCCcEEEEecCCCC--CCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHH
Q 010734 303 VNLARHIANTKA---YGANVVVAVNMFAT--DSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIA 368 (502)
Q Consensus 303 ~NL~kHIeNi~~---fGvPvVVAINrF~t--DT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~ 368 (502)
..+.+.++.+.. .+.|++|++|+... +...-.+.+++++++.++. +..+.. +=|+|-.++-+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa--~~~~~i~~~~~~ 156 (159)
T cd00154 89 ENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLL-FFETSA--KTGENVEELFQS 156 (159)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCe-EEEEec--CCCCCHHHHHHH
Confidence 344444444444 46999999999755 2332345566777777774 444433 234565555444
No 66
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=62.01 E-value=92 Score=29.85 Aligned_cols=44 Identities=25% Similarity=0.304 Sum_probs=33.4
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCC----CCCHHHHHHHHHHHHHcCCC
Q 010734 304 NLARHIANTKAYGANVVVAVNMFA----TDSKAELNAVRNAAMAAGAF 347 (502)
Q Consensus 304 NL~kHIeNi~~fGvPvVVAINrF~----tDT~~Ei~~v~~~c~~~Gv~ 347 (502)
.+.+=++-++++|.++.+++|--. .+-..+++.+...|.+.|..
T Consensus 94 ~l~~~i~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~ 141 (215)
T PRK13813 94 SLKAVVEAAAESGGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAF 141 (215)
T ss_pred HHHHHHHHHHhcCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 456667788999999999998632 22245788888889999875
No 67
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=61.96 E-value=27 Score=31.23 Aligned_cols=60 Identities=15% Similarity=0.065 Sum_probs=38.0
Q ss_pred hcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 314 AYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 314 ~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
..++|+|+++|+.-.....+-+...++++..|....-+-..=++=|+|-.+|.+.+.+.+
T Consensus 117 ~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 117 ENNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred HcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 468999999999765322222234455666666311123444677899888888877654
No 68
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=61.92 E-value=89 Score=31.10 Aligned_cols=127 Identities=17% Similarity=0.235 Sum_probs=76.9
Q ss_pred ccHHHHHHHH--hhHHHHHHHHhh-cCCcEEE--EecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHH
Q 010734 293 ENVALVEAGC--VNLARHIANTKA-YGANVVV--AVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGI 367 (502)
Q Consensus 293 eNl~AL~~G~--~NL~kHIeNi~~-fGvPvVV--AINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~ 367 (502)
-+..||+.|+ ......++.+|+ ..+|+++ -+|-+-+=- ++...+.|++.|+..+.+-+.-. |-.+
T Consensus 50 a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~G---~~~fi~~~~~aG~~giiipDl~~-------ee~~ 119 (242)
T cd04724 50 ASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQYG---LERFLRDAKEAGVDGLIIPDLPP-------EEAE 119 (242)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHhC---HHHHHHHHHHCCCcEEEECCCCH-------HHHH
Confidence 3456888886 355666777775 5789766 446432211 23445667889997565544211 2345
Q ss_pred HHHHHhhcCCCCccccCCCCCCHHHHHHHHHH-----Hh-----CCCce--eeCHHHHHHHHHHHHCCCCCCCeeEe
Q 010734 368 AVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-----SY-----GASGV--EYSEEAEKQIEMYTGQGFSGLPICMA 432 (502)
Q Consensus 368 ~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~-----IY-----GA~~V--~fS~~A~kqLk~ie~~Gf~~LPVCmA 432 (502)
.+++.|.+..-..-++...+.|.+ .|+.|+. +| |..+. .|.+...+.++++.+. .++|||+-
T Consensus 120 ~~~~~~~~~g~~~i~~i~P~T~~~-~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~--~~~pI~vg 193 (242)
T cd04724 120 EFREAAKEYGLDLIFLVAPTTPDE-RIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKY--TDLPIAVG 193 (242)
T ss_pred HHHHHHHHcCCcEEEEeCCCCCHH-HHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhc--CCCcEEEE
Confidence 666667643233556677777765 3444443 44 33333 2678888999999986 48899983
No 69
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=61.77 E-value=24 Score=31.24 Aligned_cols=69 Identities=12% Similarity=0.087 Sum_probs=43.5
Q ss_pred HhhHHHHHHHHhh---cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 302 CVNLARHIANTKA---YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 302 ~~NL~kHIeNi~~---fGvPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
|.++...++.+++ -++|+|++.|+..-..+. ..+...++|+..++. +. +.=++-|+|-.++=+.+.+.+
T Consensus 90 ~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~--~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 90 FNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIP-FL--ETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred HHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCe-EE--EEECCCCcCHHHHHHHHHHHH
Confidence 4455555555555 368999999997543332 235567788888874 43 333455788777776666554
No 70
>COG1838 FumA Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain [Energy production and conversion]
Probab=61.12 E-value=8.7 Score=37.76 Aligned_cols=153 Identities=22% Similarity=0.306 Sum_probs=93.6
Q ss_pred CHHHHHHHhcCcEEeecCCCCceeecccccchhHHHHhhhccCc--CcceeecCceeEEcccccchhcccCchHHHHHHH
Q 010734 145 SLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINP--TLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIA 222 (502)
Q Consensus 145 ~l~Dlk~Rl~~ivv~~~~~g~pvta~DL~~~GAm~~lLkdAi~P--NLvQTlEgtPa~vHgGPFANIAhG~nSviAtk~a 222 (502)
++.+|| .|.+|. .+|+-+|++|.- -.=|.+.++- -|=+.|+|.+ +.|+||--+-
T Consensus 12 ~i~~Lk--vGd~v~---lsG~I~t~RD~A-----H~ri~e~~~~ge~lP~dl~g~~-Iy~aGP~~~~------------- 67 (184)
T COG1838 12 EIAKLK--VGDVVY---LSGKIVTGRDAA-----HKRLLEMLDRGEELPVDLKGHI-IYYAGPVKTK------------- 67 (184)
T ss_pred HHHhcc--CCCEEE---EeeEEEEehhHH-----HHHHHHHHhcCCCCCccCCCCE-EEEeccccCC-------------
Confidence 344444 676664 589999999953 2334455520 1127777765 5799997653
Q ss_pred HHhcCCCCeEEeeccccccccchhccccccccCCCCCCeEEEEe-------eehhhhhcCCCCCccCCC--CC-chhcc-
Q 010734 223 LKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVA-------TIRALKMHGGGPQVVAGK--PL-DHAYL- 291 (502)
Q Consensus 223 lkla~~~dyvVTEAGFgaDlGaEKF~dIkcr~~gl~P~a~VlVa-------TvRALK~HGG~~~~~~~~--pl-~~~l~- 291 (502)
.+|+|--||-=+..=+++|.+.---+.|+. ++|. |++|+|=||++...-+|- .| -+.++
T Consensus 68 ------~~~~v~s~GPTTs~RMd~~~~~~l~~~G~~----~~iGKG~~~~~~~ea~~~~kavyl~~~gGaA~L~a~~IK~ 137 (184)
T COG1838 68 ------DGWVVGSAGPTTSGRMDKFTDELLEQTGVL----AMIGKGGRGPETVEACKKHKAVYLVAPGGAAALAAKSIKS 137 (184)
T ss_pred ------CCceeeccCCcchhhhhhhHHHHHHhcCeE----EEEecCCcCHHHHHHHHHcCeEEEEccchHHHHHHHhhhh
Confidence 399999999999999999998766655543 3333 789999999887665541 00 00111
Q ss_pred cccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHH
Q 010734 292 NENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELN 335 (502)
Q Consensus 292 ~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~ 335 (502)
.+++...+-|++-+ +++ -++.| |++|+|-..-.+--+|..
T Consensus 138 ~~~v~~~dLGmEAi-w~l-eVe~f--PliV~iDs~Gn~~~~~~~ 177 (184)
T COG1838 138 VRCVAYEDLGMEAI-WEL-EVEDF--PLIVAIDSKGNSLFKEGP 177 (184)
T ss_pred eeeEeecccChhhe-eEE-Eeccc--cEEEEEeCCCcChhhhcc
Confidence 12333333333111 111 12345 999999877766666655
No 71
>PRK06852 aldolase; Validated
Probab=60.65 E-value=93 Score=32.78 Aligned_cols=122 Identities=16% Similarity=0.050 Sum_probs=70.2
Q ss_pred HHhhHHHHHHHHhhcCCcEEE---EecCCCCC--CHHHHHHHHHHHHHcCCCeEEEcCccc-cCccchhHHHHHHHHHhh
Q 010734 301 GCVNLARHIANTKAYGANVVV---AVNMFATD--SKAELNAVRNAAMAAGAFDAVVCSHHA-HGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 301 G~~NL~kHIeNi~~fGvPvVV---AINrF~tD--T~~Ei~~v~~~c~~~Gv~~~~vs~~wa-kGGeGa~eLA~~Vv~a~e 374 (502)
=+.+|.+=++-.++||+|+|+ .-.....| .++-|....+.|.++|+. + +-.-|. +=|+|-.|.=++|++.|-
T Consensus 152 ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGAD-I-VKv~y~~~~~~g~~e~f~~vv~~~g 229 (304)
T PRK06852 152 MLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGAD-F-VKVNYPKKEGANPAELFKEAVLAAG 229 (304)
T ss_pred HHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCC-E-EEecCCCcCCCCCHHHHHHHHHhCC
Confidence 356788888999999999886 22322222 236788888899999995 4 455554 223344444455776651
Q ss_pred cCCCCccccCCCCCCHHHHHHHHHH-Hh--CCCceeeC--------HHHHHHHHHHHHCCCCC
Q 010734 375 NVTQPLKFLYPLDVSIKEKIDTIAR-SY--GASGVEYS--------EEAEKQIEMYTGQGFSG 426 (502)
Q Consensus 375 ~~~~~fk~LY~~~~sI~eKIe~IA~-IY--GA~~V~fS--------~~A~kqLk~ie~~Gf~~ 426 (502)
+...-..=-...+.++=++.+-. +- ||.+|.+- |++.+-++.+.+.=.++
T Consensus 230 --~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~p~~~~~~~Ai~~IVH~~ 290 (304)
T PRK06852 230 --RTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKPLDEAVRMCNAIYAITVED 290 (304)
T ss_pred --CCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCCCchHHHHHHHHHHHHhCC
Confidence 11111122233355555666655 44 88899852 34454455554433333
No 72
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=60.53 E-value=73 Score=31.20 Aligned_cols=59 Identities=10% Similarity=-0.001 Sum_probs=43.9
Q ss_pred HHHHHHHHhhHHHHHHHHhhcCCcEEEE---ecCCCCCCHHH--------HHHHHHHHHHcCCCeEEEcCcc
Q 010734 295 VALVEAGCVNLARHIANTKAYGANVVVA---VNMFATDSKAE--------LNAVRNAAMAAGAFDAVVCSHH 355 (502)
Q Consensus 295 l~AL~~G~~NL~kHIeNi~~fGvPvVVA---INrF~tDT~~E--------i~~v~~~c~~~Gv~~~~vs~~w 355 (502)
-+..++.+.-+.++|+-.+.+|.+.||. .+.+.. +.+| ++.+.++|++.|+. .++-++.
T Consensus 82 ~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~a~~~gv~-l~iE~~~ 151 (275)
T PRK09856 82 EHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLT-PPNVIWGRLAENLSELCEYAENIGMD-LILEPLT 151 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHcCCE-EEEecCC
Confidence 3566778889999999999999999876 222322 3444 67888899999995 7776653
No 73
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=59.88 E-value=1.2e+02 Score=29.43 Aligned_cols=90 Identities=18% Similarity=0.230 Sum_probs=54.2
Q ss_pred HHhhcCCcEEEEecCCCC-------CCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCcccc
Q 010734 311 NTKAYGANVVVAVNMFAT-------DSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFL 383 (502)
Q Consensus 311 Ni~~fGvPvVVAINrF~t-------DT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~L 383 (502)
..+++|+|++| |-+.. .++++++...+.|.+.|+. ++-. .|. +..+.-+++++.+.- +. .+
T Consensus 117 ~~~~~g~~~ii--e~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD-~Ik~-~~~----~~~~~~~~i~~~~~~---pv-v~ 184 (235)
T cd00958 117 EAHKYGLPLIA--WMYPRGPAVKNEKDPDLIAYAARIGAELGAD-IVKT-KYT----GDAESFKEVVEGCPV---PV-VI 184 (235)
T ss_pred HHHHcCCCEEE--EEeccCCcccCccCHHHHHHHHHHHHHHCCC-EEEe-cCC----CCHHHHHHHHhcCCC---CE-EE
Confidence 34579999877 54441 2457888766677788995 5433 243 245666666655421 12 11
Q ss_pred CC--CCCCHHHHHHHHHH--HhCCCceeeCHHH
Q 010734 384 YP--LDVSIKEKIDTIAR--SYGASGVEYSEEA 412 (502)
Q Consensus 384 Y~--~~~sI~eKIe~IA~--IYGA~~V~fS~~A 412 (502)
-. ...+.++-++.+.. -+||++|.+....
T Consensus 185 ~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i 217 (235)
T cd00958 185 AGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNI 217 (235)
T ss_pred eCCCCCCCHHHHHHHHHHHHHcCCcEEEechhh
Confidence 12 22467776777766 6899998876554
No 74
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=59.76 E-value=34 Score=32.91 Aligned_cols=44 Identities=23% Similarity=0.195 Sum_probs=34.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCcc
Q 010734 316 GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGK 360 (502)
Q Consensus 316 GvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGe 360 (502)
|+|+.|.+..=.- +++|+....+.|.++|+..+-.++.|..+|.
T Consensus 116 g~~lkvI~e~~~l-~~~~i~~a~ria~e~GaD~IKTsTG~~~~~a 159 (203)
T cd00959 116 GAPLKVILETGLL-TDEEIIKACEIAIEAGADFIKTSTGFGPGGA 159 (203)
T ss_pred CCeEEEEEecCCC-CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCC
Confidence 8898886665333 5889999999999999986667788976664
No 75
>TIGR02385 RelE_StbE addiction module toxin, RelE/StbE family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all are found adjacent to RelB/DinJ family antitoxin genes (TIGR02384), as are most genes found by the resulting model. StbE from Morganella morganii plasmid R485 shows typical behaviour for an addiction module toxin. It cannot be cloned without its partner (the antitoxin), whereas its partner cannot confer plasmid stability without StbE.
Probab=59.22 E-value=12 Score=29.94 Aligned_cols=50 Identities=16% Similarity=0.202 Sum_probs=27.7
Q ss_pred eeeCHHHHHHHHHHHHCCCCCCCe------eEeecC---CCCCCCCCCCCCCCCc-eEEee
Q 010734 406 VEYSEEAEKQIEMYTGQGFSGLPI------CMAKTQ---YSFSHNAAEKGAPTGF-ILPIR 456 (502)
Q Consensus 406 V~fS~~A~kqLk~ie~~Gf~~LPV------CmAKTq---ySlSdDp~l~g~P~gf-~i~Vr 456 (502)
|.||+.|+++|+++.+.=-...|- ++.++. .++.+.| ++|..+|+ .+.|.
T Consensus 2 i~~t~~A~~dl~~i~~~i~~~~~~~~~~i~~i~~~~~~~~~l~~~p-l~G~~~g~r~~~v~ 61 (88)
T TIGR02385 2 IVYTEQFKKDLKKIKKYIRKDLPKLLEVIELLINGKPLERRYRDHP-LTGSWKGTRECHIE 61 (88)
T ss_pred ceECHHHHHHHHHHHhhcCccHHHHHHHHHHHhcCCcCCccccCcc-ccCCcCCeEEEEEC
Confidence 678888888888886531122222 222232 2455555 67877773 45554
No 76
>PRK12289 GTPase RsgA; Reviewed
Probab=58.16 E-value=39 Score=35.89 Aligned_cols=62 Identities=18% Similarity=0.181 Sum_probs=41.7
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHH
Q 010734 304 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIA 368 (502)
Q Consensus 304 NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~ 368 (502)
.|.+.+..+...|+|+|+++|+-.--++++++...+..++.|.. +... =+.-|+|-.+|.+.
T Consensus 108 ~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~-v~~i--SA~tg~GI~eL~~~ 169 (352)
T PRK12289 108 QLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQ-PLFI--SVETGIGLEALLEQ 169 (352)
T ss_pred HHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCe-EEEE--EcCCCCCHHHHhhh
Confidence 34555555567899999999998766777776666666778885 4332 24456776555544
No 77
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=58.10 E-value=84 Score=34.02 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=66.6
Q ss_pred cccHHHH-HHHHhhHHHHHHHHh-hc-CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCc--cccCcc--c---
Q 010734 292 NENVALV-EAGCVNLARHIANTK-AY-GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSH--HAHGGK--G--- 361 (502)
Q Consensus 292 ~eNl~AL-~~G~~NL~kHIeNi~-~f-GvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~--wakGGe--G--- 361 (502)
-+|.+.+ +.|+.....++..++ +| .+|+++.|= ...+++|...+.+.+++.|+..+.++=. ...+.. |
T Consensus 86 l~N~~~~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~--~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~ 163 (385)
T PLN02495 86 WQNIELISDRPFETMLAEFKQLKEEYPDRILIASIM--EEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAV 163 (385)
T ss_pred ccCcccccccCHHHHHHHHHHHHhhCCCCcEEEEcc--CCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhh
Confidence 3455422 456777777888886 47 579998872 2356789998989999999853333221 222111 1
Q ss_pred --hhHHHHHHHHHhhcCCCCccccC-CCCCCHHHHHHHHHH---HhCCCceeeCHHH
Q 010734 362 --AVDLGIAVQRACENVTQPLKFLY-PLDVSIKEKIDTIAR---SYGASGVEYSEEA 412 (502)
Q Consensus 362 --a~eLA~~Vv~a~e~~~~~fk~LY-~~~~sI~eKIe~IA~---IYGA~~V~fS~~A 412 (502)
-.|+.++|++.+.+... .|++ .+.-.+.+ |..+|+ -.||++|+.....
T Consensus 164 gq~~e~~~~i~~~Vk~~~~--iPv~vKLsPn~t~-i~~ia~aa~~~Gadgi~liNT~ 217 (385)
T PLN02495 164 GQDCDLLEEVCGWINAKAT--VPVWAKMTPNITD-ITQPARVALKSGCEGVAAINTI 217 (385)
T ss_pred ccCHHHHHHHHHHHHHhhc--CceEEEeCCChhh-HHHHHHHHHHhCCCEEEEeccc
Confidence 24566666666643111 2222 01111222 666666 5899999876644
No 78
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=57.65 E-value=36 Score=30.30 Aligned_cols=65 Identities=20% Similarity=0.238 Sum_probs=39.0
Q ss_pred HHHHHHhhcCCcEEEEecCCCCCCHHHHH----HHHHHHHHcCC-------------CeEEEcCccccCccchhHHHHHH
Q 010734 307 RHIANTKAYGANVVVAVNMFATDSKAELN----AVRNAAMAAGA-------------FDAVVCSHHAHGGKGAVDLGIAV 369 (502)
Q Consensus 307 kHIeNi~~fGvPvVVAINrF~tDT~~Ei~----~v~~~c~~~Gv-------------~~~~vs~~wakGGeGa~eLA~~V 369 (502)
.+++.+++.+.|+++++|+...-++++++ .+++..+..+. .++.. .=++-|+|-.+|-+.+
T Consensus 105 ~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~Sa~~g~gi~~l~~~l 182 (189)
T cd00881 105 EHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVP--GSALTGIGVEELLEAI 182 (189)
T ss_pred HHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEE--EecccCcCHHHHHHHH
Confidence 34555666899999999997654545544 34444443331 12322 2256678887777776
Q ss_pred HHHh
Q 010734 370 QRAC 373 (502)
Q Consensus 370 v~a~ 373 (502)
.+.+
T Consensus 183 ~~~l 186 (189)
T cd00881 183 VEHL 186 (189)
T ss_pred HhhC
Confidence 6654
No 79
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=57.27 E-value=30 Score=31.05 Aligned_cols=67 Identities=12% Similarity=0.134 Sum_probs=39.5
Q ss_pred hhHHHHHHHHhh---cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHH
Q 010734 303 VNLARHIANTKA---YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 372 (502)
Q Consensus 303 ~NL~kHIeNi~~---fGvPvVVAINrF~tDT~~E--i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a 372 (502)
.++.+.++++++ .+.|+||+.|+.....+.. .+.+++++.+.+.. +. +.=+.-|+|-.++-+.+.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~--e~Sa~~~~~i~~~~~~~~~~ 164 (168)
T cd01866 93 NHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLI-FM--ETSAKTASNVEEAFINTAKE 164 (168)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCE-EE--EEeCCCCCCHHHHHHHHHHH
Confidence 345555666655 4899999999965432222 23456777777774 33 22345566666665555443
No 80
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=57.05 E-value=1.6e+02 Score=31.58 Aligned_cols=101 Identities=19% Similarity=0.154 Sum_probs=54.4
Q ss_pred HHhhHHHHHHHHhh-c-CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccc----cCccch-----hHHHHHH
Q 010734 301 GCVNLARHIANTKA-Y-GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHA----HGGKGA-----VDLGIAV 369 (502)
Q Consensus 301 G~~NL~kHIeNi~~-f-GvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wa----kGGeGa-----~eLA~~V 369 (502)
|+....++++.+++ + ..|++|-|| -+.+++|+....+..++.|+..+.++=..- ..|-|+ .++..++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~p~i~si~--g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i 159 (420)
T PRK08318 82 PLEVNLREIRRVKRDYPDRALIASIM--VECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMY 159 (420)
T ss_pred CHHHHHHHHHHHHhhCCCceEEEEec--cCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHH
Confidence 33433455666654 4 588888887 333678888888888888885444432221 112222 2455666
Q ss_pred HHHhhcCCC---CccccCCCCCCHHHHHHHHHH---HhCCCceee
Q 010734 370 QRACENVTQ---PLKFLYPLDVSIKEKIDTIAR---SYGASGVEY 408 (502)
Q Consensus 370 v~a~e~~~~---~fk~LY~~~~sI~eKIe~IA~---IYGA~~V~f 408 (502)
++.+.+..+ ..|.- +.... +..+|+ -.||++|++
T Consensus 160 ~~~v~~~~~~Pv~vKl~-p~~~~----~~~~a~~~~~~Gadgi~~ 199 (420)
T PRK08318 160 TRWVKRGSRLPVIVKLT-PNITD----IREPARAAKRGGADAVSL 199 (420)
T ss_pred HHHHHhccCCcEEEEcC-CCccc----HHHHHHHHHHCCCCEEEE
Confidence 666643211 12222 11112 445555 578898884
No 81
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=56.58 E-value=56 Score=28.34 Aligned_cols=68 Identities=13% Similarity=0.070 Sum_probs=44.3
Q ss_pred hHHHHHHHHh-hcCCcEEEEecCCCCCC--HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 304 NLARHIANTK-AYGANVVVAVNMFATDS--KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 304 NL~kHIeNi~-~fGvPvVVAINrF~tDT--~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
++..++..++ .+++|+||++|+..... ..+.+..++.+++.++. +. +.=++=|+|-.+|-+.+.+.+.
T Consensus 92 ~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~-~~--~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 92 EFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVP-YV--ETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred HHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCe-EE--EeeCCCCCCHHHHHHHHHHHHH
Confidence 3444444443 37899999999977543 23455566778878874 43 3334567898888888776553
No 82
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=56.31 E-value=64 Score=25.13 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=36.5
Q ss_pred hHHHHHHHHHhcCC-------CCeEEeeccccccccchhccccccccCCCCCCeEEEEeeeh
Q 010734 215 SIVADKIALKLVGP-------GGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIR 269 (502)
Q Consensus 215 SviAtk~alkla~~-------~dyvVTEAGFgaDlGaEKF~dIkcr~~gl~P~a~VlVaTvR 269 (502)
|.++..+|..|+.. +||++.+.+.+.+..... |+..-..+|.+++|.+..
T Consensus 13 tt~~~~l~~~l~~~g~~v~~~~d~iivD~~~~~~~~~~~-----~~~~~~~~~~vi~v~~~~ 69 (99)
T cd01983 13 TTLAANLAAALAKRGKRVLLIDDYVLIDTPPGLGLLVLL-----CLLALLAADLVIIVTTPE 69 (99)
T ss_pred HHHHHHHHHHHHHCCCeEEEECCEEEEeCCCCccchhhh-----hhhhhhhCCEEEEecCCc
Confidence 56667777777633 289999999888765443 677777899999988744
No 83
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=56.12 E-value=24 Score=35.30 Aligned_cols=119 Identities=16% Similarity=0.081 Sum_probs=73.9
Q ss_pred HHHHHHHHhcCCCCeEEeeccccccccchhc--cccccccCCC---CCCeEEEEeee--hhhhhcCCCCCccCCCCCchh
Q 010734 217 VADKIALKLVGPGGFVVTEAGFGADIGAEKF--MNIKCRYSGL---TPQCAVIVATI--RALKMHGGGPQVVAGKPLDHA 289 (502)
Q Consensus 217 iAtk~alkla~~~dyvVTEAGFgaDlGaEKF--~dIkcr~~gl---~P~a~VlVaTv--RALK~HGG~~~~~~~~pl~~~ 289 (502)
|+-+|-.||+|.+ |.+-+.-...++..+=| +| .|+..+- .|+.+-+|+++ ...+|.+......
T Consensus 50 i~lkinaKlGG~n-~~~~~~~~~~~~~~~miIGid-v~h~~~~~~~~~sv~g~~~s~~~~~~~~~~~~~~~~-------- 119 (302)
T PF02171_consen 50 IALKINAKLGGIN-PWLLDSPPSIDLKNTMIIGID-VSHPSPGSDKNPSVVGFVASFDSDGSKYFSSVRFQD-------- 119 (302)
T ss_dssp HHHHHHHHTTTBS-EEECSCSSGSSESEEEEEEEE-EEEESSTCTCSCEEEEEEEEESTTTCEEEEEEEEEC--------
T ss_pred HHHHHHHhCCCee-eeecccccccccCceEEEEEE-EEecCcccCCcceeeEEEEeccCccccccceeEEec--------
Confidence 5777888898665 56666655333211112 11 2444444 49999999998 7788887765433
Q ss_pred cccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecC-------CCCCCHHHHHHHHHHHHHcC
Q 010734 290 YLNENVALVEAGCVNLARHIANTKAYGANVVVAVNM-------FATDSKAELNAVRNAAMAAG 345 (502)
Q Consensus 290 l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAINr-------F~tDT~~Ei~~v~~~c~~~G 345 (502)
-.+|.++.|+.-+....+..++..+-..|-=|.|=| |..=-++|++.+++.|++.+
T Consensus 120 ~~~e~~~~l~~~~~~~L~~~~~~~~~~~P~~IiiyRdGvse~~~~~v~~~Ei~~i~~a~~~~~ 182 (302)
T PF02171_consen 120 SGQEIIDNLEEIIKEALKEFKKNNGKWLPERIIIYRDGVSEGQFKKVLEEEIEAIKEAIKELG 182 (302)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHTTTT-TTSEEEEEEES--GGGHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhhcchhhHHHHHHHHHHHHcCCCCCceEEEEEcccCHHhhcccHHHHHHHHHHHHhhcc
Confidence 336777778887777666665555532454444433 22223579999999999876
No 84
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=56.07 E-value=3.3e+02 Score=30.34 Aligned_cols=150 Identities=13% Similarity=0.135 Sum_probs=94.7
Q ss_pred ccchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcEEE
Q 010734 242 IGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVV 321 (502)
Q Consensus 242 lGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvVV 321 (502)
+|.|.=| .|.-+--|+-..|.+.| . +.++++.+++..+-+.++.+- .+-+.|+.-.|.
T Consensus 75 iGGEtvL---~rhe~tf~np~~Ia~eI--------~----------D~l~~e~i~~r~~~~~~~~~~-rvG~~~~AD~Ia 132 (450)
T PRK04165 75 IGGETVL---YRHEKTFFNPTGIAVDV--------S----------DTMDDEEIDARLKKINNFQFE-RVGEILKLDMVA 132 (450)
T ss_pred ECCccee---eecCcCCCCCCEEEEEE--------e----------CCCChHHHHHHHHHhhcchHh-hhcccccCCEEE
Confidence 7888866 77777777777777776 1 234456666666666666544 455667888877
Q ss_pred EecCCCCCCHHHHHHHHHHHHH-cCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCCCCHHHHHHHHHHH
Q 010734 322 AVNMFATDSKAELNAVRNAAMA-AGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARS 400 (502)
Q Consensus 322 AINrF~tDT~~Ei~~v~~~c~~-~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~I 400 (502)
.-+. +++++.+..+.+..++ .++. .++.+ --.+.+++.++++... -..+|..+..=.+++-.+|+-
T Consensus 133 L~~~--s~dp~~v~~~Vk~V~~~~dvP-LSIDT-------~dpevleaAleagad~---~plI~Sat~dN~~~m~~la~~ 199 (450)
T PRK04165 133 LRNA--SGDPEKFAKAVKKVAETTDLP-LILCS-------EDPAVLKAALEVVADR---KPLLYAATKENYEEMAELAKE 199 (450)
T ss_pred EeCC--CCCHHHHHHHHHHHHHhcCCC-EEEeC-------CCHHHHHHHHHhcCCC---CceEEecCcchHHHHHHHHHH
Confidence 7554 4466667766666655 5885 66654 2245556666665321 235666653222445555668
Q ss_pred hCCCceeeCHH---HHHHHHHHHHCCCCC
Q 010734 401 YGASGVEYSEE---AEKQIEMYTGQGFSG 426 (502)
Q Consensus 401 YGA~~V~fS~~---A~kqLk~ie~~Gf~~ 426 (502)
||+.=|..++. +++.+++++++|+.+
T Consensus 200 yg~pvVv~~~dl~~L~~lv~~~~~~GI~d 228 (450)
T PRK04165 200 YNCPLVVKAPNLEELKELVEKLQAAGIKD 228 (450)
T ss_pred cCCcEEEEchhHHHHHHHHHHHHHcCCCc
Confidence 99887777743 667777788888843
No 85
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=55.93 E-value=39 Score=29.03 Aligned_cols=58 Identities=17% Similarity=0.114 Sum_probs=36.2
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 010734 309 IANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 371 (502)
Q Consensus 309 IeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~ 371 (502)
.+-++++++|+|+++|+......++. .+...+.|...+ ...=++-|+|-.+|-+.+++
T Consensus 98 ~~~~~~~~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~--~~~Sa~~~~gv~~l~~~l~~ 155 (157)
T cd01894 98 AKYLRKSKKPVILVVNKVDNIKEEDE---AAEFYSLGFGEP--IPISAEHGRGIGDLLDAILE 155 (157)
T ss_pred HHHHHhcCCCEEEEEECcccCChHHH---HHHHHhcCCCCe--EEEecccCCCHHHHHHHHHh
Confidence 34455678999999999765554443 333445666322 23445567787777776654
No 86
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=54.93 E-value=2.5e+02 Score=28.69 Aligned_cols=95 Identities=24% Similarity=0.316 Sum_probs=49.9
Q ss_pred HHHHHhh-c-CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEE---cCc-cccCccch-----hHHHHHHHHHhhcC
Q 010734 308 HIANTKA-Y-GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVV---CSH-HAHGGKGA-----VDLGIAVQRACENV 376 (502)
Q Consensus 308 HIeNi~~-f-GvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~v---s~~-wakGGeGa-----~eLA~~Vv~a~e~~ 376 (502)
++..+++ + ..|+++-++-. .+++|+....+.+++.|+..+.+ |-+ ..+.|.|+ .++..++++.+.+.
T Consensus 89 ~~~~~~~~~~~~p~i~si~G~--~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~ 166 (299)
T cd02940 89 EIRELKKDFPDKILIASIMCE--YNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREA 166 (299)
T ss_pred HHHHHHhhCCCCeEEEEecCC--CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHh
Confidence 3444434 3 57887777643 46688888878888778754444 211 11122221 34566666666432
Q ss_pred ---CCCccccCCCCCCHHHHHHHHHH---HhCCCceeeC
Q 010734 377 ---TQPLKFLYPLDVSIKEKIDTIAR---SYGASGVEYS 409 (502)
Q Consensus 377 ---~~~fk~LY~~~~sI~eKIe~IA~---IYGA~~V~fS 409 (502)
|=..|.- + +. +.+..+|+ -.|++.|+.+
T Consensus 167 ~~~Pv~vKl~-~-~~---~~~~~~a~~~~~~Gadgi~~~ 200 (299)
T cd02940 167 VKIPVIAKLT-P-NI---TDIREIARAAKEGGADGVSAI 200 (299)
T ss_pred cCCCeEEECC-C-Cc---hhHHHHHHHHHHcCCCEEEEe
Confidence 1112211 1 11 13555665 4788888753
No 87
>PTZ00369 Ras-like protein; Provisional
Probab=54.85 E-value=66 Score=29.72 Aligned_cols=57 Identities=14% Similarity=0.014 Sum_probs=36.1
Q ss_pred cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 315 YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~--~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
-++|+|++.|+..-..+ -+.+...+++++.+.. +..+. ++-|+|-.++-+.+++.+.
T Consensus 109 ~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~-~~e~S--ak~~~gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 109 DRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIP-FLETS--AKQRVNVDEAFYELVREIR 167 (189)
T ss_pred CCCCEEEEEECcccccccccCHHHHHHHHHHhCCE-EEEee--CCCCCCHHHHHHHHHHHHH
Confidence 48999999998654211 1233456667777774 43333 5678898887666665543
No 88
>PRK15447 putative protease; Provisional
Probab=54.64 E-value=23 Score=36.43 Aligned_cols=112 Identities=19% Similarity=0.193 Sum_probs=66.4
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCC-CCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccc
Q 010734 304 NLARHIANTKAYGANVVVAVNMFA-TDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKF 382 (502)
Q Consensus 304 NL~kHIeNi~~fGvPvVVAINrF~-tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~ 382 (502)
-|..=|+-+++.|..++|++|+.. .| +|++.+.++++. |+. .++. +-=|.+.++++ . .+..
T Consensus 49 ~l~e~v~~~~~~gkkvyva~p~i~~~~--~e~~~l~~~l~~-~~~-~v~v-----~d~g~l~~~~e----~-----~~~l 110 (301)
T PRK15447 49 DWLELAERLAAAGKEVVLSTLALVEAP--SELKELRRLVEN-GEF-LVEA-----NDLGAVRLLAE----R-----GLPF 110 (301)
T ss_pred HHHHHHHHHHHcCCEEEEEecccccCH--HHHHHHHHHHhc-CCC-EEEE-----eCHHHHHHHHh----c-----CCCE
Confidence 344446677889999999999963 33 488888887764 553 3332 22355555554 1 1222
Q ss_pred cCCCCCCHHHHHHHHHH-HhCCCceeeCHHHH-HHHHHHHH--------------CCCCCCCeeEee
Q 010734 383 LYPLDVSIKEKIDTIAR-SYGASGVEYSEEAE-KQIEMYTG--------------QGFSGLPICMAK 433 (502)
Q Consensus 383 LY~~~~sI~eKIe~IA~-IYGA~~V~fS~~A~-kqLk~ie~--------------~Gf~~LPVCmAK 433 (502)
..+....+-.-...-.- =+|+++|+.|.+-. +||+.+.+ ..+|++|+++..
T Consensus 111 ~~d~~lni~N~~a~~~l~~~G~~rv~ls~ELsl~eI~~i~~~~~~~~~~~~~~Ev~VhG~lp~m~S~ 177 (301)
T PRK15447 111 VAGPALNCYNAATLALLARLGATRWCMPVELSRDWLANLLAQCPELGRNQFEVEVFAYGRLPLAYSA 177 (301)
T ss_pred EEecccccCCHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHhcccccCCCcceEEEEEchhHHHhhc
Confidence 23333333332221122 57999999988764 77777743 257888865543
No 89
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=54.52 E-value=56 Score=30.31 Aligned_cols=35 Identities=11% Similarity=0.226 Sum_probs=23.4
Q ss_pred HHHHhhcCCcEEEEecCCCC---CCHHHHHHHHHHHHH
Q 010734 309 IANTKAYGANVVVAVNMFAT---DSKAELNAVRNAAMA 343 (502)
Q Consensus 309 IeNi~~fGvPvVVAINrF~t---DT~~Ei~~v~~~c~~ 343 (502)
+..+...++|+|+++|+-.. +.++.++.+++++.+
T Consensus 110 ~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 147 (194)
T cd01891 110 LKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIE 147 (194)
T ss_pred HHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 44445579999999999764 233456667777643
No 90
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=54.39 E-value=70 Score=28.71 Aligned_cols=58 Identities=7% Similarity=-0.050 Sum_probs=36.6
Q ss_pred cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccc-cCccchhHHHHHHHHHh
Q 010734 315 YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHA-HGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~E--i~~v~~~c~~~Gv~~~~vs~~wa-kGGeGa~eLA~~Vv~a~ 373 (502)
-++|+|++.|+..-....+ .+...++++..+.. +..+.... .++++-.++-..+++.+
T Consensus 108 ~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 108 NEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMP-LFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred CCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCc-EEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 4699999999976433332 23455666766664 55555554 45777777766665543
No 91
>PHA02096 hypothetical protein
Probab=54.31 E-value=11 Score=32.95 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=22.4
Q ss_pred cHHHHHHHHhhHHHHHHHHhh--cCCcEEEEecCCC
Q 010734 294 NVALVEAGCVNLARHIANTKA--YGANVVVAVNMFA 327 (502)
Q Consensus 294 Nl~AL~~G~~NL~kHIeNi~~--fGvPvVVAINrF~ 327 (502)
|+..-++.++...|--.-+++ ||.|.+|+||+=+
T Consensus 41 ~~~~ak~~i~eylkgt~vikkrlfg~ptiv~inkps 76 (103)
T PHA02096 41 SLKNAKKSIEEYLKGTTVIKKRLFGPPTIVSVNKPS 76 (103)
T ss_pred HHHHHHHHHHHHhcccchhhhhhcCCCeEEEecCch
Confidence 444445555555554445555 9999999999843
No 92
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=53.97 E-value=48 Score=28.85 Aligned_cols=56 Identities=9% Similarity=-0.023 Sum_probs=38.7
Q ss_pred cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 315 YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~--~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
.++|+||++|+-..... ...+.+.+++++.|+. + -+.=++-|+|-.+|-+.+++.+
T Consensus 104 ~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~--~e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 104 PNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLP-F--FETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred CCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCe-E--EEEeCCCCCCHHHHHHHHHHHH
Confidence 47999999998654332 2345677888888874 3 3444566788888877777654
No 93
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=53.78 E-value=62 Score=28.21 Aligned_cols=55 Identities=11% Similarity=-0.041 Sum_probs=33.8
Q ss_pred cCCcEEEEecCCCCCC--HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHH
Q 010734 315 YGANVVVAVNMFATDS--KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 372 (502)
Q Consensus 315 fGvPvVVAINrF~tDT--~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a 372 (502)
.++|++|+.|+..--. ....+...+++++.+.. +..+ =++=|+|-.+|-+.+++.
T Consensus 105 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 105 ENVPMVLVGNKCDLEDERVVSREEGQALARQWGCP-FYET--SAKSKINVDEVFADLVRQ 161 (163)
T ss_pred CCCCEEEEEECccccccceecHHHHHHHHHHcCCe-EEEe--cCCCCCCHHHHHHHHHHh
Confidence 5899999999964321 11233445666666753 3333 344578888887776653
No 94
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=53.70 E-value=65 Score=28.77 Aligned_cols=56 Identities=7% Similarity=-0.060 Sum_probs=35.3
Q ss_pred cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 315 YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
-++|++|+.|+..-.... ..+...++++..+..-+.+|-. =|+|-.++-+.+++.+
T Consensus 107 ~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~---~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 107 EDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAK---ANINVEEAFFTLAKDI 164 (167)
T ss_pred CCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCC---CCCCHHHHHHHHHHHH
Confidence 479999999986542211 2334566777777743333333 3678888887777665
No 95
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=53.36 E-value=41 Score=33.95 Aligned_cols=98 Identities=21% Similarity=0.155 Sum_probs=63.1
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCcccc
Q 010734 304 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFL 383 (502)
Q Consensus 304 NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~L 383 (502)
....|++..-+.|+|+|+.-= .=|++|.+.+.+.|++.|+. +.++-.|+-|=-=...|++...+.. +=
T Consensus 80 ~~~~~~~~al~~g~~vVigtt---g~~~e~~~~l~~aA~~~g~~-v~~a~NfSlGv~ll~~~~~~aa~~l--------~~ 147 (266)
T TIGR00036 80 GVLNHLKFALEHGVRLVVGTT---GFSEEDKQELADLAEKAGIA-AVIAPNFSIGVNLMFKLLEKAAKYL--------GD 147 (266)
T ss_pred HHHHHHHHHHHCCCCEEEECC---CCCHHHHHHHHHHHhcCCcc-EEEECcccHHHHHHHHHHHHHHHhc--------cC
Confidence 345577778889999999653 34889999999999999995 8888888887433333333332221 11
Q ss_pred CCCCCCHHHHHHHHHHHhCCCceee-CHHHHHHHHHHHHC
Q 010734 384 YPLDVSIKEKIDTIARSYGASGVEY-SEEAEKQIEMYTGQ 422 (502)
Q Consensus 384 Y~~~~sI~eKIe~IA~IYGA~~V~f-S~~A~kqLk~ie~~ 422 (502)
| +-.|.| +-....+.. |-.|++-.+.+.+.
T Consensus 148 ~--dieI~E-------~HH~~K~DaPSGTA~~l~~~i~~~ 178 (266)
T TIGR00036 148 Y--DIEIIE-------LHHRHKKDAPSGTALKTAEMIAEA 178 (266)
T ss_pred C--CEEeee-------eccCCCCCCCCHHHHHHHHHHHHh
Confidence 3 223322 234445555 77777777777654
No 96
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=53.32 E-value=57 Score=30.42 Aligned_cols=59 Identities=7% Similarity=-0.064 Sum_probs=38.9
Q ss_pred hcCCcEEEEecCCCCC--CHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 314 AYGANVVVAVNMFATD--SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 314 ~fGvPvVVAINrF~tD--T~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
..++|+|++.|+-.-. .....+.+.++|++.+...+.. .=++=|+|-.++-+.+++.+-
T Consensus 108 ~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e--~Sak~~~~v~e~f~~l~~~l~ 168 (201)
T cd04107 108 GEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFE--TSAKEGINIEEAMRFLVKNIL 168 (201)
T ss_pred CCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEE--EeCCCCCCHHHHHHHHHHHHH
Confidence 4689999999997653 2233455678888888423332 334457888887777776654
No 97
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=53.30 E-value=1.1e+02 Score=29.87 Aligned_cols=96 Identities=10% Similarity=0.115 Sum_probs=59.7
Q ss_pred cccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEe-cCCC-CCCHHHHH----HHHHHHH-HcCCCeEEEcCccccCccc-
Q 010734 290 YLNENVALVEAGCVNLARHIANTKAYGANVVVAV-NMFA-TDSKAELN----AVRNAAM-AAGAFDAVVCSHHAHGGKG- 361 (502)
Q Consensus 290 l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAI-NrF~-tDT~~Ei~----~v~~~c~-~~Gv~~~~vs~~wakGGeG- 361 (502)
+..++-+..++.+..|++.|+-.+.+|.+.||.- -.+. .++++.++ .+.+.|+ +.|+. .++-+.+..+..=
T Consensus 71 l~s~d~~~r~~~~~~l~~~i~~A~~lGa~~vv~h~g~~~~~~~e~~~~~~~~~l~~l~~~~~gv~-l~lEn~~~~~~~~~ 149 (273)
T smart00518 71 LASPDKEKVEKSIERLIDEIKRCEELGIKALVFHPGSYLKQSKEEALNRIIESLNEVIDETKGVV-ILLETTAGKGSQIG 149 (273)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHHHHhccCCcE-EEEeccCCCCCccC
Confidence 3456777889999999999999999999988852 1222 23344444 4445554 36774 7777765444321
Q ss_pred -hhHHHHHHHHHhhcCCCCccccCCCC
Q 010734 362 -AVDLGIAVQRACENVTQPLKFLYPLD 387 (502)
Q Consensus 362 -a~eLA~~Vv~a~e~~~~~fk~LY~~~ 387 (502)
..+-...+++.++.. .++.+++|..
T Consensus 150 ~~~~~~~~ll~~v~~~-~~~g~~lD~g 175 (273)
T smart00518 150 STFEDLKEIIDLIKEL-DRIGVCIDTC 175 (273)
T ss_pred CCHHHHHHHHHhcCCC-CCeEEEEEcc
Confidence 234455666666431 3477777654
No 98
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=53.21 E-value=24 Score=40.29 Aligned_cols=129 Identities=23% Similarity=0.298 Sum_probs=83.9
Q ss_pred hhcccCchHHHHHHHHHhcCCCCeEEeeccc----------cccccchh--cccc-------ccccCCCC-CCeEEEEee
Q 010734 208 NIAHGNSSIVADKIALKLVGPGGFVVTEAGF----------GADIGAEK--FMNI-------KCRYSGLT-PQCAVIVAT 267 (502)
Q Consensus 208 NIAhG~nSviAtk~alkla~~~dyvVTEAGF----------gaDlGaEK--F~dI-------kcr~~gl~-P~a~VlVaT 267 (502)
-.-||--|++- +|+-+ +.+-+|+|= ..+=| ++ |+|- +.|.-|-+ -|-||||..
T Consensus 161 HVDHGKTTLLD---~lRks---~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVA 233 (683)
T KOG1145|consen 161 HVDHGKTTLLD---ALRKS---SVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVVLVVA 233 (683)
T ss_pred cccCChhhHHH---HHhhC---ceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEEEEEE
Confidence 46799888872 45555 666666661 12223 44 6663 67777777 788998876
Q ss_pred ehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHH-------
Q 010734 268 IRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNA------- 340 (502)
Q Consensus 268 vRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~------- 340 (502)
.- -|+- ..-+|+ |+..|.-+||+|||||+-..- .+-++.+.+.
T Consensus 234 ad-----DGVm-------------pQT~Ea-----------IkhAk~A~VpiVvAinKiDkp-~a~pekv~~eL~~~gi~ 283 (683)
T KOG1145|consen 234 AD-----DGVM-------------PQTLEA-----------IKHAKSANVPIVVAINKIDKP-GANPEKVKRELLSQGIV 283 (683)
T ss_pred cc-----CCcc-------------HhHHHH-----------HHHHHhcCCCEEEEEeccCCC-CCCHHHHHHHHHHcCcc
Confidence 21 1222 122333 666778899999999986432 3344444443
Q ss_pred HHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 341 AMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 341 c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
|++.|. ++-+-..=+.=|++--+|+++++-.++
T Consensus 284 ~E~~GG-dVQvipiSAl~g~nl~~L~eaill~Ae 316 (683)
T KOG1145|consen 284 VEDLGG-DVQVIPISALTGENLDLLEEAILLLAE 316 (683)
T ss_pred HHHcCC-ceeEEEeecccCCChHHHHHHHHHHHH
Confidence 555666 366667778899999999999987765
No 99
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=52.78 E-value=87 Score=27.46 Aligned_cols=56 Identities=13% Similarity=-0.001 Sum_probs=36.8
Q ss_pred cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 315 YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
.+.|+|++.|+..-..+. +.+.+.+++++.++. +..+ =++-|+|-.+|=+.+++.+
T Consensus 104 ~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 104 DDVPIVLVGNKCDLESERVVSTEEGKELARQWGCP-FLET--SAKERVNVDEAFYDLVREI 161 (164)
T ss_pred CCCCEEEEEECccccccceEcHHHHHHHHHHcCCE-EEEe--ecCCCCCHHHHHHHHHHHH
Confidence 589999999997643221 234456677777764 3333 2456888888888777655
No 100
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=52.27 E-value=75 Score=31.44 Aligned_cols=88 Identities=9% Similarity=0.064 Sum_probs=54.2
Q ss_pred cccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCC----CCCCHHH-------HHHHHHHHHHcCCCeEEEcCc---ccc
Q 010734 292 NENVALVEAGCVNLARHIANTKAYGANVVVAVNMF----ATDSKAE-------LNAVRNAAMAAGAFDAVVCSH---HAH 357 (502)
Q Consensus 292 ~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAINrF----~tDT~~E-------i~~v~~~c~~~Gv~~~~vs~~---wak 357 (502)
.+|.+.-++.+..++++|+-.+.+|.|+|+. .-. ..++++. +..+.+++++.|+. .++-.+ |..
T Consensus 83 ~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~-l~lE~~~~~~~~ 160 (279)
T TIGR00542 83 SKDKAVRQQGLEIMEKAIQLARDLGIRTIQL-AGYDVYYEEHDEETRRRFREGLKEAVELAARAQVT-LAVEIMDTPFMS 160 (279)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHhCCCEEEe-cCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCE-EEEeeCCCchhc
Confidence 3456677889999999999999999998864 421 2233433 34556778888995 666543 222
Q ss_pred CccchhHHHHHHHHHhhcCCCCccccCCCC
Q 010734 358 GGKGAVDLGIAVQRACENVTQPLKFLYPLD 387 (502)
Q Consensus 358 GGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~ 387 (502)
-.+ ++ .++++.+.. ..++.+||.-
T Consensus 161 t~~---~~-~~li~~v~~--~~v~~~~D~~ 184 (279)
T TIGR00542 161 SIS---KW-LKWDHYLNS--PWFTLYPDIG 184 (279)
T ss_pred CHH---HH-HHHHHHcCC--CceEEEeCcC
Confidence 211 22 234444432 3577777653
No 101
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=52.26 E-value=77 Score=28.33 Aligned_cols=59 Identities=15% Similarity=0.134 Sum_probs=38.6
Q ss_pred hhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 313 KAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 313 ~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
+..+.|+++++|+..--++++.+...++.+..+..-+.+| ++-|+|-.+|-+.+.+.+.
T Consensus 38 ~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iS---a~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 38 LELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVS---AKERLGTKILRRTIKELAK 96 (156)
T ss_pred HhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEE---ccccccHHHHHHHHHHHHh
Confidence 3458999999999765445555544445555565322233 5678888888888877664
No 102
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=51.67 E-value=1.2e+02 Score=29.86 Aligned_cols=89 Identities=9% Similarity=0.045 Sum_probs=54.0
Q ss_pred ccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCC---CCC-H-------HHHHHHHHHHHHcCCCeEEEcCccccCccc
Q 010734 293 ENVALVEAGCVNLARHIANTKAYGANVVVAVNMFA---TDS-K-------AELNAVRNAAMAAGAFDAVVCSHHAHGGKG 361 (502)
Q Consensus 293 eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAINrF~---tDT-~-------~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeG 361 (502)
+|.+.-++....+++.|+-.+.+|.|.|+. .-+. ..+ + +.+..+.+.+++.|+. +++-++...- -.
T Consensus 89 ~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~-i~iE~~~~~~-~~ 165 (283)
T PRK13209 89 EDDAVRAQALEIMRKAIQLAQDLGIRVIQL-AGYDVYYEQANNETRRRFIDGLKESVELASRASVT-LAFEIMDTPF-MN 165 (283)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEE-CCccccccccHHHHHHHHHHHHHHHHHHHHHhCCE-EEEeecCCcc-cC
Confidence 455667788999999999999999998874 3222 111 2 2345667777788995 7776653211 11
Q ss_pred hhHHHHHHHHHhhcCCCCccccCCC
Q 010734 362 AVDLGIAVQRACENVTQPLKFLYPL 386 (502)
Q Consensus 362 a~eLA~~Vv~a~e~~~~~fk~LY~~ 386 (502)
..+=+..+++.+. ...+...||.
T Consensus 166 ~~~~~~~ll~~v~--~~~lgl~~D~ 188 (283)
T PRK13209 166 SISKALGYAHYLN--SPWFQLYPDI 188 (283)
T ss_pred CHHHHHHHHHHhC--CCccceEecc
Confidence 2222333444442 2457777764
No 103
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=51.30 E-value=47 Score=39.12 Aligned_cols=96 Identities=24% Similarity=0.315 Sum_probs=53.1
Q ss_pred cchhccccccccCCCC-CCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcEEE
Q 010734 243 GAEKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVV 321 (502)
Q Consensus 243 GaEKF~dIkcr~~gl~-P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvVV 321 (502)
|-|.|. ..|..|.. .|++|||.... + |+. ..-..|+..++.+|+|+||
T Consensus 346 Ghe~F~--~m~~rga~~aDiaILVVdAd----d-Gv~------------------------~qT~e~i~~a~~~~vPiIV 394 (787)
T PRK05306 346 GHEAFT--AMRARGAQVTDIVVLVVAAD----D-GVM------------------------PQTIEAINHAKAAGVPIIV 394 (787)
T ss_pred CCccch--hHHHhhhhhCCEEEEEEECC----C-CCC------------------------HhHHHHHHHHHhcCCcEEE
Confidence 344554 45666665 78888887643 1 211 1123356677889999999
Q ss_pred EecCCCCCCHHHHHHHHHH-------HHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 010734 322 AVNMFATDSKAELNAVRNA-------AMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 371 (502)
Q Consensus 322 AINrF~tDT~~Ei~~v~~~-------c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~ 371 (502)
++|+..-... ..+.+.+. +++.|- .+-+...=++=|+|-.+|-+.++.
T Consensus 395 viNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~-~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 395 AINKIDKPGA-NPDRVKQELSEYGLVPEEWGG-DTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred EEECcccccc-CHHHHHHHHHHhcccHHHhCC-CceEEEEeCCCCCCchHHHHhhhh
Confidence 9999765321 12223332 223331 012223345567777777776654
No 104
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=50.82 E-value=52 Score=28.32 Aligned_cols=66 Identities=12% Similarity=0.012 Sum_probs=40.7
Q ss_pred hhHHHHHHHHhh-cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 010734 303 VNLARHIANTKA-YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 371 (502)
Q Consensus 303 ~NL~kHIeNi~~-fGvPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~ 371 (502)
..+...+.+... .++|++|++|+....... -.+.+.+++++.+..-+ ..=++-|+|-.+|-+.+++
T Consensus 90 ~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~---~~S~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 90 KGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFI---ETSAKDNINIDEVFKLLVR 158 (160)
T ss_pred HHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEE---EeccCCCCCHHHHHHHHHh
Confidence 344445555544 689999999998654322 22456666777775423 2334556788877777654
No 105
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=50.57 E-value=70 Score=30.17 Aligned_cols=69 Identities=13% Similarity=0.155 Sum_probs=47.1
Q ss_pred HHHHHHhhcCCcEEEEecCCCCCCHHH-------------HHHHHHHHHH----cCC--CeEEEcCccccCccchhHHHH
Q 010734 307 RHIANTKAYGANVVVAVNMFATDSKAE-------------LNAVRNAAMA----AGA--FDAVVCSHHAHGGKGAVDLGI 367 (502)
Q Consensus 307 kHIeNi~~fGvPvVVAINrF~tDT~~E-------------i~~v~~~c~~----~Gv--~~~~vs~~wakGGeGa~eLA~ 367 (502)
+.++.++++|.|+++++|+-..+..+| ++.+++.|.+ .|+ ..+-+...+..||-+-..|-+
T Consensus 98 ~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~ 177 (197)
T cd04104 98 KLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRE 177 (197)
T ss_pred HHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHH
Confidence 446667778999999999987765322 6677777774 222 234455555567778888888
Q ss_pred HHHHHhhc
Q 010734 368 AVQRACEN 375 (502)
Q Consensus 368 ~Vv~a~e~ 375 (502)
.++..+.+
T Consensus 178 ~~~~~l~~ 185 (197)
T cd04104 178 TLLKDLPA 185 (197)
T ss_pred HHHHHhhH
Confidence 88877753
No 106
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=49.93 E-value=10 Score=38.38 Aligned_cols=120 Identities=18% Similarity=0.242 Sum_probs=66.9
Q ss_pred cCchHHH--HHHHHHhcCCCCeEEeeccccccccchhccccccccCCCCCCeE---EEEeeehhhhhcCCCCCccCCCCC
Q 010734 212 GNSSIVA--DKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCA---VIVATIRALKMHGGGPQVVAGKPL 286 (502)
Q Consensus 212 G~nSviA--tk~alkla~~~dyvVTEAGFgaDlGaEKF~dIkcr~~gl~P~a~---VlVaTvRALK~HGG~~~~~~~~pl 286 (502)
.+.|.-. .++.-|..--.||+||-..|..+. .++|++ +||..|+.--.+ -.+.+.+.+.+.-.. .|-.+
T Consensus 154 ~~~~~~~~~~~l~~Ki~aGA~f~iTQ~~fd~~~-~~~~~~-~~~~~g~~~pIi~GI~p~~s~~~~~~~~~~----~Gv~i 227 (287)
T PF02219_consen 154 EAPDFEAELKRLKKKIDAGADFIITQPFFDAEA-FERFLD-RLREAGIDVPIIPGIMPLTSAKSARFLAKL----CGVDI 227 (287)
T ss_dssp TCSSHHHHHHHHHHHHHTTESEEEEEE-SSHHH-HHHHHH-HHHHTTHTSEEEEEEE-HCCHHHHHHHHHH----HT-EE
T ss_pred cccCHHHHHHHHHHHHHCCCCEEeccccCCHHH-HHHHHH-HHHHcCCCCcEEEEEeccCCHHHHHHHHhc----cCccC
Confidence 3444433 445556522239999999999988 899998 899999832221 123344444443211 12234
Q ss_pred chhccc------ccHHHH-HHHHhhHHHHHHHHhhcCCcEE--EEecCCCCCCHHHHHHHHHHHHHcC
Q 010734 287 DHAYLN------ENVALV-EAGCVNLARHIANTKAYGANVV--VAVNMFATDSKAELNAVRNAAMAAG 345 (502)
Q Consensus 287 ~~~l~~------eNl~AL-~~G~~NL~kHIeNi~~fGvPvV--VAINrF~tDT~~Ei~~v~~~c~~~G 345 (502)
|+++.+ .+.++. +.|++-....++.+...|++=| .++|++ +.+.+.++++|
T Consensus 228 P~~~~~~l~~~~~~~~~~~~~gi~~a~e~~~~l~~~gv~GvH~~t~n~~--------~~~~~il~~lg 287 (287)
T PF02219_consen 228 PDELIERLEEAKDDPEAVREIGIEIAVELIRELLAEGVPGVHLYTMNRE--------ELVPEILENLG 287 (287)
T ss_dssp EHHHHHHHHTTTT-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEEETTTS--------HHHHHHHHHTT
T ss_pred CHHHHHHHHHhcCCHHHHHHHhHHHHHHHHHHHHHcCCCeEEEEcCCCH--------HHHHHHHHHcC
Confidence 554433 233333 4577777777888777675532 357776 45555555554
No 107
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=49.89 E-value=91 Score=28.30 Aligned_cols=59 Identities=14% Similarity=0.091 Sum_probs=40.5
Q ss_pred cCCcEEEEecCCCCCCHH------HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 315 YGANVVVAVNMFATDSKA------ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~------Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
-++|+|++.|+..-..+. ..+...++|++.|...+..+. ++=|+|-.++-+.+++.+..
T Consensus 104 ~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S--a~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 104 PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECS--AKTMENVEEVFDTAIEEALK 168 (187)
T ss_pred CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEcc--CCCCCCHHHHHHHHHHHHHh
Confidence 479999999996532211 134567788888874344443 67789999988888877653
No 108
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=49.67 E-value=1.8e+02 Score=25.93 Aligned_cols=50 Identities=12% Similarity=0.087 Sum_probs=28.7
Q ss_pred chHHHHHHHHHhcCCCCeEEeeccccccccchhccccccccCCCCCCeEEE
Q 010734 214 SSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVI 264 (502)
Q Consensus 214 nSviAtk~alkla~~~dyvVTEAGFgaDlGaEKF~dIkcr~~gl~P~a~Vl 264 (502)
.+.+...++.+.. ..++-|.-.|++-+-=.+---.++......+||.|+|
T Consensus 18 ~~~~~~~l~~~~~-~~~~~v~n~g~~G~t~~~~~~~~~~~~~~~~~d~v~l 67 (191)
T cd01834 18 VGYVETYLAARYP-ELKLTFRNLGWSGDTVSDLAARRDRDVLPAKPDVVSI 67 (191)
T ss_pred HHHHHHHHHHhCC-CCCcEEEEcccCccchhhhhhhhhcccccCCCCEEEE
Confidence 4556666666652 1267777777776543321113444455677998777
No 109
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=49.60 E-value=54 Score=33.83 Aligned_cols=50 Identities=12% Similarity=0.079 Sum_probs=38.7
Q ss_pred HhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEc
Q 010734 302 CVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVC 352 (502)
Q Consensus 302 ~~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs 352 (502)
+....+.|+.++++|+++.|... ...++.+|++.+.++++++|+..+.+.
T Consensus 131 f~~v~~~i~~l~~~g~~v~v~~v-v~~~N~~~l~~~~~~~~~lg~~~i~~~ 180 (358)
T TIGR02109 131 FEQKLAMARAVKAAGLPLTLNFV-IHRHNIDQIPEIIELAIELGADRVELA 180 (358)
T ss_pred HHHHHHHHHHHHhCCCceEEEEE-eccCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 45556677888889999877553 346788999999999999999766554
No 110
>COG1159 Era GTPase [General function prediction only]
Probab=49.50 E-value=1e+02 Score=32.62 Aligned_cols=91 Identities=13% Similarity=-0.041 Sum_probs=58.9
Q ss_pred HHHHHhhcCCcEEEEecCCCCCCHHH-HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCC
Q 010734 308 HIANTKAYGANVVVAVNMFATDSKAE-LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPL 386 (502)
Q Consensus 308 HIeNi~~fGvPvVVAINrF~tDT~~E-i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~ 386 (502)
-++.+++-..|++++||+-..-++++ +..+.++..+..-+ ..+-..=|.-|++-..|.+.+.+.+.+++.-|-.=|=.
T Consensus 106 il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f-~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~it 184 (298)
T COG1159 106 ILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPF-KEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQIT 184 (298)
T ss_pred HHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCc-ceEEEeeccccCCHHHHHHHHHHhCCCCCCcCChhhcc
Confidence 35566666689999999866444444 45555565655553 35556668999999999999999887653322222223
Q ss_pred CCCHHHHHHHHHH
Q 010734 387 DVSIKEKIDTIAR 399 (502)
Q Consensus 387 ~~sI~eKIe~IA~ 399 (502)
+.|-+-.+..|-|
T Consensus 185 D~~~rf~~aEiiR 197 (298)
T COG1159 185 DRPERFLAAEIIR 197 (298)
T ss_pred CChHHHHHHHHHH
Confidence 4566666655554
No 111
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=49.45 E-value=39 Score=29.02 Aligned_cols=39 Identities=10% Similarity=0.159 Sum_probs=32.0
Q ss_pred HhhHHHHHHHHhhcCCc-EEEEecCCCCCCHHHHHHHHHH
Q 010734 302 CVNLARHIANTKAYGAN-VVVAVNMFATDSKAELNAVRNA 340 (502)
Q Consensus 302 ~~NL~kHIeNi~~fGvP-vVVAINrF~tDT~~Ei~~v~~~ 340 (502)
++...+-++.+++.|+| ++..+=-++.+|++|++.+.++
T Consensus 126 ~~~~~~~l~~l~~~g~~~~~~~i~~~~~~~~~e~~~~~~~ 165 (166)
T PF04055_consen 126 FERVLEALERLKEAGIPRVIIFIVGLPGENDEEIEETIRF 165 (166)
T ss_dssp HHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHhCc
Confidence 45566667778889999 7888888999999999888776
No 112
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=48.91 E-value=38 Score=30.98 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=24.1
Q ss_pred HHhhcCCcEEEEecCCCCCCHHH----HHHHHHHHHHcC
Q 010734 311 NTKAYGANVVVAVNMFATDSKAE----LNAVRNAAMAAG 345 (502)
Q Consensus 311 Ni~~fGvPvVVAINrF~tDT~~E----i~~v~~~c~~~G 345 (502)
.++.+++|+++++|+.....+++ ++.+++++...|
T Consensus 124 ~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~ 162 (179)
T TIGR03598 124 WLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDA 162 (179)
T ss_pred HHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhcc
Confidence 34568999999999987655554 455556666544
No 113
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=48.57 E-value=35 Score=36.87 Aligned_cols=78 Identities=12% Similarity=0.140 Sum_probs=60.3
Q ss_pred eehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHh--hHHHHHHHHhhcCCcEEEE-ecCCCCCCHHHHHHHHHHHHH
Q 010734 267 TIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCV--NLARHIANTKAYGANVVVA-VNMFATDSKAELNAVRNAAMA 343 (502)
Q Consensus 267 TvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~--NL~kHIeNi~~fGvPvVVA-INrF~tDT~~Ei~~v~~~c~~ 343 (502)
+++.||-. |+.....| .+..+++.++.+.||.. ...+-++.++++|+.+.+- |==||.+|.++++...+++.+
T Consensus 289 ~l~~l~~a-G~~~v~iG---iES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~ 364 (472)
T TIGR03471 289 TLKVMKEN-GLRLLLVG---YESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKE 364 (472)
T ss_pred HHHHHHHc-CCCEEEEc---CCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 35666655 56666667 36777888999988864 5667888999999986643 336899999999999999999
Q ss_pred cCCCe
Q 010734 344 AGAFD 348 (502)
Q Consensus 344 ~Gv~~ 348 (502)
++...
T Consensus 365 l~~~~ 369 (472)
T TIGR03471 365 LNPHT 369 (472)
T ss_pred cCCCc
Confidence 98753
No 114
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=48.21 E-value=56 Score=28.81 Aligned_cols=55 Identities=9% Similarity=-0.024 Sum_probs=36.4
Q ss_pred cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHH
Q 010734 315 YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 372 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a 372 (502)
-++|++|+.|+-.-.+.. ..+.+.++|.+.++. +. +.=++-|+|-.+|-+.+++.
T Consensus 107 ~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~--~~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 107 SNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLS-FI--ETSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred CCCeEEEEEECccccccccCCHHHHHHHHHHcCCE-EE--EEECCCCCCHHHHHHHHHHH
Confidence 479999999997654332 234556677777763 33 44457788888887776653
No 115
>TIGR02116 toxin_Txe_YoeB toxin-antitoxin system, toxin component, Txe/YoeB family. The Axe-Txe pair in Enterococcus faecium and the homologous YefM-YoeB pair in Escherichia coli have been shown to act as an antitoxin-toxin pair. This model describes the toxin component. Nearly every example found is next to an identifiable antitoxin, as indicated by matches to TIGR01552 and/or pfam02604.
Probab=47.87 E-value=8.6 Score=31.78 Aligned_cols=53 Identities=15% Similarity=0.212 Sum_probs=31.8
Q ss_pred eCHHHHHHHHHHHHCC------CCCCCeeEeecCCCCCCC-CCCCCCCCCc-eEEee-EEEe
Q 010734 408 YSEEAEKQIEMYTGQG------FSGLPICMAKTQYSFSHN-AAEKGAPTGF-ILPIR-DVRA 460 (502)
Q Consensus 408 fS~~A~kqLk~ie~~G------f~~LPVCmAKTqySlSdD-p~l~g~P~gf-~i~Vr-dv~~ 460 (502)
|++.|+++|+++.+.. +.+.--.++..|++-+-+ -+|+|...|| .+.|. |-|+
T Consensus 1 ~~~~a~kdlkkl~k~~~~~~~~i~~~i~~l~~~P~~~~~~~~~L~G~~~g~~r~rig~dyRI 62 (80)
T TIGR02116 1 FTPEAWEDYKKWQEADKKLKKKINELIKDVRRDPFKGKGKPEPLKGDLSGYWSRRITDEHRL 62 (80)
T ss_pred CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHcCCCCCCCCcccCCCCCCCcEEEEcCCCeEE
Confidence 5777888887775432 111111345567764443 3489999995 87777 6554
No 116
>TIGR00053 addiction module toxin component, YafQ family. This model represents a cluster of eubacterial proteins and a cluster of archaeal proteins, all of which are uncharacterized, from 85 to 102 residues in length, and similar in sequence. These include YafQ, a ribosome-associated endoribonuclease that serves as part of a toxin-antitoxin system, for which DinJ is the antidote component.
Probab=47.71 E-value=10 Score=31.68 Aligned_cols=54 Identities=22% Similarity=0.260 Sum_probs=32.6
Q ss_pred ceeeCHHHHHHHHHHHH-CCCC-----CCCeeEeec-CCCCCC-CCCCCCCCCCc-eEEe-eEE
Q 010734 405 GVEYSEEAEKQIEMYTG-QGFS-----GLPICMAKT-QYSFSH-NAAEKGAPTGF-ILPI-RDV 458 (502)
Q Consensus 405 ~V~fS~~A~kqLk~ie~-~Gf~-----~LPVCmAKT-qySlSd-Dp~l~g~P~gf-~i~V-rdv 458 (502)
.|.||+.|+++++++.+ .+.. +.--+++.+ +..-+- +-+|+|..+|| .++| .+.
T Consensus 3 ~i~~~~~a~k~lkkl~~~~~~~~~~i~~~i~~l~~~~~~p~~~~~~~L~G~~~g~~r~rv~~~~ 66 (89)
T TIGR00053 3 KIEYSKQFDKDLKKLSKRNGKDLKKLLKKMEELINTLPLPEHYKDHPLRGPWKGFRRCHIKPDV 66 (89)
T ss_pred ceEECHHHHHHHHHHHHhCCccHHHHHHHHHHHHcCCCCCcccCCccCcCCcCCCEEEeeCCCE
Confidence 57899999999999876 2211 111134443 222222 22699999995 6777 454
No 117
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=47.59 E-value=3.1e+02 Score=27.83 Aligned_cols=171 Identities=22% Similarity=0.266 Sum_probs=93.7
Q ss_pred CeEEe-ec--cccccccchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHH
Q 010734 230 GFVVT-EA--GFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLA 306 (502)
Q Consensus 230 dyvVT-EA--GFgaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~ 306 (502)
.++|| |- -.|+| +.+++++-.++.....||++-| | ++.+... ...-.-+.
T Consensus 10 ~~~~s~E~~PPk~~~-~~~~l~~~~~~l~~~~pd~vsV--T-----d~~~~~~-------------------~~~s~~~a 62 (287)
T PF02219_consen 10 EFVVSFELFPPKGAD-GEEKLLEAAERLKDLGPDFVSV--T-----DNPGGSS-------------------RMMSLLAA 62 (287)
T ss_dssp S-EEEEEE---SSHH-HHHHHHHHHHHHHTT--SEEEE----------GCGTT-------------------HHHHHHHH
T ss_pred CCEEEEEEeCCCCch-HHHHHHHHHHHhcCCCCCEEEe--e-----cCCCCcc-------------------cCCcHHHH
Confidence 55555 32 23333 4678888888888888999855 3 3322211 11112233
Q ss_pred HHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEE-cCccccCcc----------chhHHHHHHHHHhhc
Q 010734 307 RHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVV-CSHHAHGGK----------GAVDLGIAVQRACEN 375 (502)
Q Consensus 307 kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~v-s~~wakGGe----------Ga~eLA~~Vv~a~e~ 375 (502)
.++. +.+|+++|+=+.-... +..+++.....+.++|++.+-. .--+.++|+ .+.+|.+.+-+....
T Consensus 63 ~~l~--~~~g~~~i~Hlt~rd~-n~~~l~~~L~~~~~~Gi~niL~l~GD~~~~g~~~~~~~~~~~~~~~Li~~i~~~~~~ 139 (287)
T PF02219_consen 63 AKLL--KETGIEPIPHLTCRDR-NREALQSDLLGAHALGIRNILALTGDPPKGGDHFAKPVFDFDYALDLIRLIRQEYGD 139 (287)
T ss_dssp HHHH--HHTT--EEEEEESTTS-BHHHHHHHHHHHHHTT--EEEEESS-TSTTSSS----TTS-SSHHHHHHHHHHHHGG
T ss_pred HHHH--HHhCCceEEeecccCC-CHHHHHHHHHHHHHcCCCeEEEecCCCCCCCccccCCCchhHHHHHHHHHHHHhcCc
Confidence 3443 3689999999998765 5789988888899999976533 333444443 355666654432111
Q ss_pred CCCCccccC----CCCCCHHHHHHHHHH-H-hCCCce----eeCHHHHHHH-HHHHHCCCCCCCeeE
Q 010734 376 VTQPLKFLY----PLDVSIKEKIDTIAR-S-YGASGV----EYSEEAEKQI-EMYTGQGFSGLPICM 431 (502)
Q Consensus 376 ~~~~fk~LY----~~~~sI~eKIe~IA~-I-YGA~~V----~fS~~A~kqL-k~ie~~Gf~~LPVCm 431 (502)
.-.-.--.| +...+++.-++.+.+ + .||+-+ .|+...-.++ +.+.+.|. +.||-.
T Consensus 140 ~~~i~va~~P~~hp~~~~~~~~~~~l~~Ki~aGA~f~iTQ~~fd~~~~~~~~~~~~~~g~-~~pIi~ 205 (287)
T PF02219_consen 140 DFSIGVAGYPEGHPEAPDFEAELKRLKKKIDAGADFIITQPFFDAEAFERFLDRLREAGI-DVPIIP 205 (287)
T ss_dssp GSEEEEEE-TTHHTTCSSHHHHHHHHHHHHHTTESEEEEEE-SSHHHHHHHHHHHHHTTH-TSEEEE
T ss_pred ccccccccCCCCCccccCHHHHHHHHHHHHHCCCCEEeccccCCHHHHHHHHHHHHHcCC-CCcEEE
Confidence 000001223 455678888888877 4 688754 3887666654 46777887 778754
No 118
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=47.54 E-value=67 Score=28.01 Aligned_cols=67 Identities=16% Similarity=0.156 Sum_probs=40.4
Q ss_pred HhhHHHHHHHHhh-cC--CcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 010734 302 CVNLARHIANTKA-YG--ANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 371 (502)
Q Consensus 302 ~~NL~kHIeNi~~-fG--vPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~ 371 (502)
+.++...++.++. .+ +|+++++|+-...... -.+.+...+++.++. +. +.=++=|+|-.+|-+.+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~--~~Sa~~~~~v~~l~~~i~~ 159 (161)
T cd01861 88 FDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAM-FI--ETSAKAGHNVKELFRKIAS 159 (161)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCE-EE--EEeCCCCCCHHHHHHHHHH
Confidence 4555555555543 44 9999999987662211 223455566666764 32 3445667787777776654
No 119
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=47.47 E-value=1.3e+02 Score=29.26 Aligned_cols=85 Identities=21% Similarity=0.112 Sum_probs=50.5
Q ss_pred HHhhHHHHHHHHhhcCCcEEEEecCCC-C-CCHHH--------HHHHHHHHHHcCCCeEEEcC--ccccCccc--hhHHH
Q 010734 301 GCVNLARHIANTKAYGANVVVAVNMFA-T-DSKAE--------LNAVRNAAMAAGAFDAVVCS--HHAHGGKG--AVDLG 366 (502)
Q Consensus 301 G~~NL~kHIeNi~~fGvPvVVAINrF~-t-DT~~E--------i~~v~~~c~~~Gv~~~~vs~--~wakGGeG--a~eLA 366 (502)
-..+++++|+..+.+|.+.|+...-.. . .+.+| +..+.++|++.|+. +.+-. .|...|.. ..+=+
T Consensus 82 ~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~-l~lE~~~~~~~~~~~l~t~~~~ 160 (254)
T TIGR03234 82 FREGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLT-LLIEPINSFDMPGFFLTTTEQA 160 (254)
T ss_pred HHHHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCE-EEEEECCcccCCCChhcCHHHH
Confidence 356899999999999999887654222 1 12233 56666778889995 66653 34322221 22223
Q ss_pred HHHHHHhhcCCCCccccCCCCC
Q 010734 367 IAVQRACENVTQPLKFLYPLDV 388 (502)
Q Consensus 367 ~~Vv~a~e~~~~~fk~LY~~~~ 388 (502)
..+++.+. ..++..+||.-.
T Consensus 161 ~~li~~v~--~~~~~i~~D~~h 180 (254)
T TIGR03234 161 LAVIDDVG--RENLKLQYDLYH 180 (254)
T ss_pred HHHHHHhC--CCCEeEeeehhh
Confidence 34444443 245777777653
No 120
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=47.43 E-value=95 Score=27.57 Aligned_cols=63 Identities=13% Similarity=0.070 Sum_probs=38.6
Q ss_pred HHHHhh--cCCcEEEEecCCCCCCHHH--------------HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHH
Q 010734 309 IANTKA--YGANVVVAVNMFATDSKAE--------------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 372 (502)
Q Consensus 309 IeNi~~--fGvPvVVAINrF~tDT~~E--------------i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a 372 (502)
++.+++ -++|+|++.|+..-.++.+ .+...++|++.|...+.. .=++=|+|-.+|-+.+++.
T Consensus 93 ~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e--~Sa~~~~~v~~lf~~l~~~ 170 (174)
T smart00174 93 YPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLE--CSALTQEGVREVFEEAIRA 170 (174)
T ss_pred HHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEE--ecCCCCCCHHHHHHHHHHH
Confidence 444443 3899999999976533211 122346777777633333 3456778888887777665
Q ss_pred h
Q 010734 373 C 373 (502)
Q Consensus 373 ~ 373 (502)
+
T Consensus 171 ~ 171 (174)
T smart00174 171 A 171 (174)
T ss_pred h
Confidence 4
No 121
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=47.21 E-value=31 Score=30.67 Aligned_cols=38 Identities=13% Similarity=0.222 Sum_probs=29.8
Q ss_pred hhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHH
Q 010734 303 VNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMA 343 (502)
Q Consensus 303 ~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~ 343 (502)
..+..|++-..++|+|+|+.-=-| |++|++.+++++++
T Consensus 78 ~~~~~~~~~~~~~g~~~ViGTTG~---~~~~~~~l~~~a~~ 115 (124)
T PF01113_consen 78 DAVYDNLEYALKHGVPLVIGTTGF---SDEQIDELEELAKK 115 (124)
T ss_dssp HHHHHHHHHHHHHT-EEEEE-SSS---HHHHHHHHHHHTTT
T ss_pred HHhHHHHHHHHhCCCCEEEECCCC---CHHHHHHHHHHhcc
Confidence 356678888888999999987766 78999999998876
No 122
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=46.84 E-value=63 Score=27.90 Aligned_cols=60 Identities=28% Similarity=0.314 Sum_probs=36.2
Q ss_pred HhhcCCcEEEEecCCCCCCHHHHH-HHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 312 TKAYGANVVVAVNMFATDSKAELN-AVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 312 i~~fGvPvVVAINrF~tDT~~Ei~-~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
+.++++|+|+++|+...-..+++. .+.++.+..|.. +.... +.-|+|-.+|-+.+...++
T Consensus 97 ~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~iS--a~~~~~~~~l~~~l~~~~~ 157 (158)
T cd01879 97 LLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVP-VVPTS--ARKGEGIDELKDAIAELAE 157 (158)
T ss_pred HHHcCCCEEEEEehhhhcccccchhhHHHHHHhhCCC-eEEEE--ccCCCCHHHHHHHHHHHhc
Confidence 345799999999997653322222 234555556764 33322 3556777777777666543
No 123
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=46.18 E-value=2.3e+02 Score=25.69 Aligned_cols=104 Identities=17% Similarity=0.138 Sum_probs=54.2
Q ss_pred CCcEEEEecCCCCC--CHHHHHHHHHHHHHcCCCeEEEcCccc-cCc---cchhHHHHHHHHHhhcCCCC-ccccCCCCC
Q 010734 316 GANVVVAVNMFATD--SKAELNAVRNAAMAAGAFDAVVCSHHA-HGG---KGAVDLGIAVQRACENVTQP-LKFLYPLDV 388 (502)
Q Consensus 316 GvPvVVAINrF~tD--T~~Ei~~v~~~c~~~Gv~~~~vs~~wa-kGG---eGa~eLA~~Vv~a~e~~~~~-fk~LY~~~~ 388 (502)
.+|+++-++....+ |++-+ ...+.|++.|+..+.+.-.|. .-. ++..+.-++|.+.+ ...-. +-+.|+...
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~-~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~pv~iy~~p~~~ 125 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKV-AEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAA-DGGLPLKVILETRGL 125 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHH-HHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHh-cCCceEEEEEECCCC
Confidence 59999999887643 44444 444667789996433332332 211 44455555555554 11111 112233322
Q ss_pred -CHHHHHHHH---HHHhCCCceeeCHH------HHHHHHHHHHC
Q 010734 389 -SIKEKIDTI---ARSYGASGVEYSEE------AEKQIEMYTGQ 422 (502)
Q Consensus 389 -sI~eKIe~I---A~IYGA~~V~fS~~------A~kqLk~ie~~ 422 (502)
+.+ -+.++ +...|++.|..+.. -..+++++.+.
T Consensus 126 ~~~~-~~~~~~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~ 168 (201)
T cd00945 126 KTAD-EIAKAARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEA 168 (201)
T ss_pred CCHH-HHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHh
Confidence 332 24443 34579999987764 34566666543
No 124
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=45.47 E-value=85 Score=31.23 Aligned_cols=61 Identities=11% Similarity=0.144 Sum_probs=36.6
Q ss_pred hhHHHHHHHHhhcCCcEEEEecCCCCCCHHHH--HHHHHHHHHcCCCeEEEcCccccCccchhHHHH
Q 010734 303 VNLARHIANTKAYGANVVVAVNMFATDSKAEL--NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGI 367 (502)
Q Consensus 303 ~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei--~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~ 367 (502)
.+|.+.+..++..++|+|+++|+-.-.++.++ +++..++ +.|.. +..+ =++=|+|-.+|-+
T Consensus 54 ~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~~g~~-v~~~--SAktg~gi~eLf~ 116 (245)
T TIGR00157 54 NQLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYR-NIGYQ-VLMT--SSKNQDGLKELIE 116 (245)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHH-HCCCe-EEEE--ecCCchhHHHHHh
Confidence 34666666666789999999999765333333 3444444 57874 3322 2445666555443
No 125
>PRK04213 GTP-binding protein; Provisional
Probab=45.45 E-value=1.2e+02 Score=28.07 Aligned_cols=61 Identities=21% Similarity=0.218 Sum_probs=36.4
Q ss_pred HHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC--------eEEEcCccccCccchhHHHHHHHHHhh
Q 010734 310 ANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF--------DAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 310 eNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~--------~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
+.++..++|++|++|+-.-...+ -+.+.+++++.|.. .+..+. ++=| |-.+|-+.+.+.+.
T Consensus 124 ~~~~~~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~S--A~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 124 DFLRELGIPPIVAVNKMDKIKNR-DEVLDEIAERLGLYPPWRQWQDIIAPIS--AKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred HHHHHcCCCeEEEEECccccCcH-HHHHHHHHHHhcCCccccccCCcEEEEe--cccC-CHHHHHHHHHHhhc
Confidence 34445799999999997653322 23445556666651 123233 2335 87777777776654
No 126
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=45.45 E-value=5.2 Score=35.03 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHhCCCceeeCHHHHHHHHHHHHCCCCCCCeeEeecCCCCCCCCC
Q 010734 389 SIKEKIDTIARSYGASGVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYSFSHNAA 443 (502)
Q Consensus 389 sI~eKIe~IA~IYGA~~V~fS~~A~kqLk~ie~~Gf~~LPVCmAKTqySlSdDp~ 443 (502)
=++.|||++++=+|-+ ++.+..+....+.+.+ .-++-||.+|+.++|+++|+
T Consensus 17 ~ik~kve~~l~~~gi~-~~~~~~~v~~~~~~~~--~aDiiv~s~~l~~~~~~~~~ 68 (93)
T COG3414 17 MIKMKVEEVLKELGID-VDVEQCAVDEIKALTD--GADIIVTSTKLADEFEDIPK 68 (93)
T ss_pred HHHHHHHHHHHHcCCC-ceeeeEEecccccCCC--cccEEEEehHhhhhcCcCCC
Confidence 3789999999966666 6655555555544433 34889999999999999997
No 127
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=45.37 E-value=57 Score=29.85 Aligned_cols=40 Identities=15% Similarity=0.280 Sum_probs=29.2
Q ss_pred HHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010734 307 RHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 347 (502)
Q Consensus 307 kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~ 347 (502)
+-++.++++|+|+.+.+|++...+. ..+.+++++++.|+.
T Consensus 134 ~~~~~l~~~~~~~~vV~N~~~~~~~-~~~~~~~~~~~~~~~ 173 (179)
T cd03110 134 RAVELVRHFGIPVGVVINKYDLNDE-IAEEIEDYCEEEGIP 173 (179)
T ss_pred HHHHHHHHcCCCEEEEEeCCCCCcc-hHHHHHHHHHHcCCC
Confidence 3344556678999999999887654 344577888888885
No 128
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=45.15 E-value=83 Score=27.47 Aligned_cols=56 Identities=13% Similarity=0.091 Sum_probs=37.4
Q ss_pred cCCcEEEEecCCCCC--CHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 315 YGANVVVAVNMFATD--SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 315 fGvPvVVAINrF~tD--T~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
.++|+||++|+-..- ...+.+.+.++|++.++. ...+. ++=|+|-.+|-+.+++.+
T Consensus 105 ~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 105 PNIIIALVGNKADLESKRQVSTEEAQEYADENGLL-FFETS--AKTGENVNELFTEIAKKL 162 (163)
T ss_pred CCCeEEEEEECccccccCcCCHHHHHHHHHHcCCE-EEEEE--CCCCCCHHHHHHHHHHHh
Confidence 469999999985432 222455677888888874 43333 445778888888776643
No 129
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=44.95 E-value=3e+02 Score=26.69 Aligned_cols=104 Identities=17% Similarity=0.133 Sum_probs=65.2
Q ss_pred HHhhHHHHHHHHhhcCCcEEEEecCCCC--CCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc-CC
Q 010734 301 GCVNLARHIANTKAYGANVVVAVNMFAT--DSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN-VT 377 (502)
Q Consensus 301 G~~NL~kHIeNi~~fGvPvVVAINrF~t--DT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~-~~ 377 (502)
-+.+....|+.+++.|+++.+.+=-... .+++++..+.+.+.+.|+..+.+++. -|..--.+.. ..++.+.+ -+
T Consensus 113 ~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt--~G~~~P~~v~-~li~~l~~~~~ 189 (265)
T cd03174 113 DLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDT--VGLATPEEVA-ELVKALREALP 189 (265)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechh--cCCcCHHHHH-HHHHHHHHhCC
Confidence 4567888899999999999999944444 88999999999999999987777776 2322222333 33333322 12
Q ss_pred -CCccccCCCCCCHHHHHHHHHH-HhCCCceee
Q 010734 378 -QPLKFLYPLDVSIKEKIDTIAR-SYGASGVEY 408 (502)
Q Consensus 378 -~~fk~LY~~~~sI~eKIe~IA~-IYGA~~V~f 408 (502)
-.+.+=.-.+.-+- =-+.++- -.||+.|+=
T Consensus 190 ~~~~~~H~Hn~~gla-~an~laA~~aG~~~id~ 221 (265)
T cd03174 190 DVPLGLHTHNTLGLA-VANSLAALEAGADRVDG 221 (265)
T ss_pred CCeEEEEeCCCCChH-HHHHHHHHHcCCCEEEe
Confidence 12222222233332 2456666 788887763
No 130
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=44.91 E-value=1e+02 Score=27.00 Aligned_cols=55 Identities=9% Similarity=-0.037 Sum_probs=34.8
Q ss_pred hcCCcEEEEecCCCCC-CHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 010734 314 AYGANVVVAVNMFATD-SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 371 (502)
Q Consensus 314 ~fGvPvVVAINrF~tD-T~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~ 371 (502)
..++|++|++|+-... .+...+...+++++.++. +..+. ++=|+|-.++-+.+++
T Consensus 104 ~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~~~~~~~~ 159 (161)
T cd01863 104 NNDIVKMLVGNKIDKENREVTREEGLKFARKHNML-FIETS--AKTRDGVQQAFEELVE 159 (161)
T ss_pred CCCCcEEEEEECCcccccccCHHHHHHHHHHcCCE-EEEEe--cCCCCCHHHHHHHHHH
Confidence 4789999999985432 122334566777777774 33332 3446888887777654
No 131
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=44.84 E-value=65 Score=28.43 Aligned_cols=56 Identities=13% Similarity=0.032 Sum_probs=37.0
Q ss_pred cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 315 YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
.++|++++.|+..-.... +.+...+++++.+.. +..+. ++=|+|-.++-+.+++.+
T Consensus 105 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 105 EDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCA-FLETS--AKAKINVNEIFYDLVRQI 162 (164)
T ss_pred CCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCE-EEEee--CCCCCCHHHHHHHHHHHh
Confidence 579999999997643221 223345677777774 44443 455789888888877654
No 132
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=44.82 E-value=82 Score=31.26 Aligned_cols=47 Identities=17% Similarity=0.136 Sum_probs=36.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchh
Q 010734 316 GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAV 363 (502)
Q Consensus 316 GvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~ 363 (502)
|+|+-|.+-.=. =|++|+....+.|.++|+..+-.|+.|..+|.--.
T Consensus 117 g~~lKvIlE~~~-L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~ 163 (211)
T TIGR00126 117 GVLLKVIIETGL-LTDEEIRKACEICIDAGADFVKTSTGFGAGGATVE 163 (211)
T ss_pred CCeEEEEEecCC-CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHH
Confidence 888888776433 35589999999999999987778899997775433
No 133
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=44.75 E-value=70 Score=28.04 Aligned_cols=65 Identities=14% Similarity=0.152 Sum_probs=37.6
Q ss_pred hHHHHHHHHh---hcCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 010734 304 NLARHIANTK---AYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 371 (502)
Q Consensus 304 NL~kHIeNi~---~fGvPvVVAINrF~tDT~~E--i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~ 371 (502)
++.+-++.++ ..++|++|+.|+..--...+ .+.+.+++++.+.. +. +.=++=|+|-.++=+.+++
T Consensus 90 ~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~--~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 90 ALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLL-FL--ETSALTGENVEEAFLKCAR 159 (161)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCE-EE--EEECCCCCCHHHHHHHHHH
Confidence 3344444443 45899999999974321211 23456777778864 33 3334667777666555443
No 134
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=44.74 E-value=1.2e+02 Score=26.26 Aligned_cols=56 Identities=18% Similarity=0.077 Sum_probs=36.6
Q ss_pred cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 315 YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~--~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
.+.|+|++.|+-....+ ...+..++++++.+.. +. +.=++-|+|-.++-+.+++.+
T Consensus 109 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~--~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 109 ENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFK-YF--ETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred CCceEEEEEEchhcccccccCHHHHHHHHHHcCCe-EE--EEECCCCCCHHHHHHHHHHHH
Confidence 56899999999765321 1233445677878864 33 333456888888888776543
No 135
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=44.73 E-value=2.3e+02 Score=28.97 Aligned_cols=94 Identities=17% Similarity=0.171 Sum_probs=61.6
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHH-------HHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCC
Q 010734 305 LARHIANTKAYGANVVVAVNMFATDSKAELNAV-------RNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVT 377 (502)
Q Consensus 305 L~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v-------~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~ 377 (502)
|++-|+-.+++||+| |+.+|-.|+... .++|+++|...+.+|+.+-+=. -.++++.|-.+.+
T Consensus 43 l~eki~la~~~~V~v------~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~--~~~~~rlI~~~~~--- 111 (237)
T TIGR03849 43 VKEKIEMYKDYGIKV------YPGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSMEIS--LEERCNLIERAKD--- 111 (237)
T ss_pred HHHHHHHHHHcCCeE------eCCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccCCC--HHHHHHHHHHHHh---
Confidence 666788899999998 467888887554 3489999998788887655422 2234443333332
Q ss_pred CCccccC---------CCCCCHHHHHHHHHH--HhCCCceeeC
Q 010734 378 QPLKFLY---------PLDVSIKEKIDTIAR--SYGASGVEYS 409 (502)
Q Consensus 378 ~~fk~LY---------~~~~sI~eKIe~IA~--IYGA~~V~fS 409 (502)
..|+.+. +...++.+.|+.+.+ =-||+.|.-.
T Consensus 112 ~g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~ViiE 154 (237)
T TIGR03849 112 NGFMVLSEVGKKSPEKDSELTPDDRIKLINKDLEAGADYVIIE 154 (237)
T ss_pred CCCeEeccccccCCcccccCCHHHHHHHHHHHHHCCCcEEEEe
Confidence 2233332 224678889999977 6788877543
No 136
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=44.57 E-value=1.2e+02 Score=27.64 Aligned_cols=57 Identities=11% Similarity=-0.070 Sum_probs=31.8
Q ss_pred hcCCcEEEEecCCCCCCHHHHHHHHHHHHHcC-------------CCeEEEcCccccCccchhHHHHHHH
Q 010734 314 AYGANVVVAVNMFATDSKAELNAVRNAAMAAG-------------AFDAVVCSHHAHGGKGAVDLGIAVQ 370 (502)
Q Consensus 314 ~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~G-------------v~~~~vs~~wakGGeGa~eLA~~Vv 370 (502)
..+.|++|+.|+..--.....+.+++++.... ...+-+.+.=++.|+|-.|+-+.+.
T Consensus 118 ~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~ 187 (190)
T cd00879 118 LANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLS 187 (190)
T ss_pred ccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHH
Confidence 36799999999975321122344555543211 1112344555788888777655543
No 137
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=44.49 E-value=1.7e+02 Score=28.69 Aligned_cols=137 Identities=20% Similarity=0.262 Sum_probs=75.3
Q ss_pred ccCchHHHHHHHHHhcCCCCeEEeeccccccccchhccccccccCCCCCCeEEEEeeehhh--hhcCCCCCcc-------
Q 010734 211 HGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRAL--KMHGGGPQVV------- 281 (502)
Q Consensus 211 hG~nSviAtk~alkla~~~dyvVTEAGFgaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRAL--K~HGG~~~~~------- 281 (502)
|.-.---.|...++-| |.+|+= | +|.|.|++ |-..+...++..|+ .....+ ..|+.-+-.=
T Consensus 33 H~~~~~p~d~~~l~~A---dlvv~~-G----~~~e~~l~-~~~~~~~~~~~~~i-~~~~~~~~~~~~~npH~Wldp~~~~ 102 (256)
T PF01297_consen 33 HDYEPTPSDIKKLQKA---DLVVYN-G----LGLEPWLE-KLLESSQNPKVKVI-DLSEGIDLDHHGHNPHVWLDPENAK 102 (256)
T ss_dssp TT----HHHHHHHHHS---SEEEES------TTTSCCHH-HHHHTTTTTTTEEE-ETTTTS-GSTTCBESTGGGSHHHHH
T ss_pred ccccCChHHHHHHHhC---CEEEEe-C----Cccchhhh-hhhhcccccccceE-EeecccccccCCCCCchHHHHHHHH
Confidence 5555556677788888 988873 2 34444443 22234444554444 333333 2233211100
Q ss_pred ---------CC--CCCchhcccccHHHHHHHHhhHHHHHHHHh--------------------hcCCcEEEEe--cCCCC
Q 010734 282 ---------AG--KPLDHAYLNENVALVEAGCVNLARHIANTK--------------------AYGANVVVAV--NMFAT 328 (502)
Q Consensus 282 ---------~~--~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~--------------------~fGvPvVVAI--NrF~t 328 (502)
+. .|--.+.=++|.+.+.+-+..|.+.++... .||+.++-.+ +.-..
T Consensus 103 ~~~~~Ia~~L~~~~P~~~~~y~~N~~~~~~~L~~l~~~~~~~~~~~~~~~~v~~h~~~~Y~~~~~gl~~~~~~~~~~~~~ 182 (256)
T PF01297_consen 103 KMAEAIADALSELDPANKDYYEKNAEKYLKELDELDAEIKEKLAKLPGRPVVVYHDAFQYFAKRYGLKVIGVIEISPGEE 182 (256)
T ss_dssp HHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSGGEEEEEESTTHHHHHHTT-EEEEEESSSSSSS
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCeEEEEChHHHHHHHhcCCceeeeeccccccC
Confidence 00 222345556788888888888888877542 3556555555 44445
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEcCccccC
Q 010734 329 DSKAELNAVRNAAMAAGAFDAVVCSHHAHG 358 (502)
Q Consensus 329 DT~~Ei~~v~~~c~~~Gv~~~~vs~~wakG 358 (502)
=|.+++..+.+.+++.+++ +++++.+...
T Consensus 183 ps~~~l~~l~~~ik~~~v~-~i~~e~~~~~ 211 (256)
T PF01297_consen 183 PSPKDLAELIKLIKENKVK-CIFTEPQFSS 211 (256)
T ss_dssp S-HHHHHHHHHHHHHTT-S-EEEEETTS-T
T ss_pred CCHHHHHHHHHHhhhcCCc-EEEecCCCCh
Confidence 6788888888888888885 7777766543
No 138
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=44.45 E-value=59 Score=33.05 Aligned_cols=61 Identities=21% Similarity=0.174 Sum_probs=37.9
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHH
Q 010734 304 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGI 367 (502)
Q Consensus 304 NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~ 367 (502)
.+++.+..++..++|+|+++|+-.-.++.+......+..+.|.. +... =++=|+|-.+|-+
T Consensus 97 ~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~-v~~v--SA~~g~gi~~L~~ 157 (287)
T cd01854 97 LLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYP-VLAV--SAKTGEGLDELRE 157 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCe-EEEE--ECCCCccHHHHHh
Confidence 46777777788899999999997654444433334455667874 3322 2344566555443
No 139
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=44.09 E-value=80 Score=29.94 Aligned_cols=66 Identities=11% Similarity=0.073 Sum_probs=38.3
Q ss_pred HHHHHHHhhcCC-cEEEEecCCCCCCHHHH----HHHHHHHHHc---CCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 306 ARHIANTKAYGA-NVVVAVNMFATDSKAEL----NAVRNAAMAA---GAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 306 ~kHIeNi~~fGv-PvVVAINrF~tDT~~Ei----~~v~~~c~~~---Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
..|+..++.+++ |+||++|+.--..++++ +.++++++.. ++.-+.+| ++=|+|-.+|-+.+.+.+.
T Consensus 126 ~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vS---A~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 126 SEHLAALEIMGLKHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPIS---AQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred HHHHHHHHHcCCCcEEEEEEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEe---CCCCCCHHHHHHHHHHhCC
Confidence 345555566676 58889999776555554 4445555432 44312222 4456777777776665553
No 140
>PRK04527 argininosuccinate synthase; Provisional
Probab=43.80 E-value=3.1e+02 Score=30.11 Aligned_cols=28 Identities=18% Similarity=0.082 Sum_probs=20.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEEEc
Q 010734 325 MFATDSKAELNAVRNAAMAAGAFDAVVC 352 (502)
Q Consensus 325 rF~tDT~~Ei~~v~~~c~~~Gv~~~~vs 352 (502)
....-+.+|++.+++.|++.|+.+..+-
T Consensus 35 d~gq~~~~El~~a~~~A~~lG~~~~~vi 62 (400)
T PRK04527 35 DTGGVDAEERDFIEKRAAELGAASHVTV 62 (400)
T ss_pred EeCCCCHHHHHHHHHHHHHcCCCeEEEe
Confidence 3444457899999999999998434443
No 141
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=43.74 E-value=96 Score=26.87 Aligned_cols=55 Identities=16% Similarity=0.091 Sum_probs=31.0
Q ss_pred HhhcCC-cEEEEecCCCCCCHHH----HHHHHHHHHHc---CCCeEEEcCccccCccchhHHHHHH
Q 010734 312 TKAYGA-NVVVAVNMFATDSKAE----LNAVRNAAMAA---GAFDAVVCSHHAHGGKGAVDLGIAV 369 (502)
Q Consensus 312 i~~fGv-PvVVAINrF~tDT~~E----i~~v~~~c~~~---Gv~~~~vs~~wakGGeGa~eLA~~V 369 (502)
++..+. |+++++|+..-..+++ .+.+.++++.. +.. +..+. ++-|+|-.+|-+.+
T Consensus 99 ~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~v~~l~~~l 161 (164)
T cd04171 99 LELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAP-IFPVS--AVTGEGIEELKEYL 161 (164)
T ss_pred HHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCc-EEEEe--CCCCcCHHHHHHHH
Confidence 444566 9999999975444332 34445555542 343 33322 56667766655443
No 142
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=43.60 E-value=53 Score=35.16 Aligned_cols=78 Identities=8% Similarity=-0.014 Sum_probs=51.9
Q ss_pred eehhhhhcC-CCCCccCCCCCchhcccccHHHHHHHHh--hHHHHHHHHhhcCCcEE---EEecCCCCCCHHHHHHHHHH
Q 010734 267 TIRALKMHG-GGPQVVAGKPLDHAYLNENVALVEAGCV--NLARHIANTKAYGANVV---VAVNMFATDSKAELNAVRNA 340 (502)
Q Consensus 267 TvRALK~HG-G~~~~~~~~pl~~~l~~eNl~AL~~G~~--NL~kHIeNi~~fGvPvV---VAINrF~tDT~~Ei~~v~~~ 340 (502)
.+.++|-+| +.....+| .+..+++.++.+.+|.. ...+=|+.+++.+..+. -.|-=||.+|+++++...++
T Consensus 234 ll~~~~~~~~~~~~l~ig---lES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~~~i~i~~~~I~G~PgET~e~~~~t~~f 310 (430)
T TIGR01125 234 VIDLMAEGPKVLPYLDIP---LQHASDRILKLMRRPGSGEQQLDFIERLREKCPDAVLRTTFIVGFPGETEEDFQELLDF 310 (430)
T ss_pred HHHHHhhCCcccCceEeC---CCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhCCCCeEeEEEEEECCCCCHHHHHHHHHH
Confidence 346676665 34444444 25566777788877642 34455666776643322 23556899999999999999
Q ss_pred HHHcCCC
Q 010734 341 AMAAGAF 347 (502)
Q Consensus 341 c~~~Gv~ 347 (502)
+++.++.
T Consensus 311 l~~~~~~ 317 (430)
T TIGR01125 311 VEEGQFD 317 (430)
T ss_pred HHhcCCC
Confidence 9999885
No 143
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=43.43 E-value=52 Score=31.52 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=28.1
Q ss_pred hHHHHHHHHhhcCCc-EEEEecCCCC-CCHHHHH----HHHHHHHHcCC
Q 010734 304 NLARHIANTKAYGAN-VVVAVNMFAT-DSKAELN----AVRNAAMAAGA 346 (502)
Q Consensus 304 NL~kHIeNi~~fGvP-vVVAINrF~t-DT~~Ei~----~v~~~c~~~Gv 346 (502)
..++|+..++++|+| +||++|+.-- +.++-.+ .+++..++.|.
T Consensus 105 ~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~ 153 (195)
T cd01884 105 QTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGF 153 (195)
T ss_pred HHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 456688899999998 7799999754 3332223 34555555553
No 144
>PRK00049 elongation factor Tu; Reviewed
Probab=43.22 E-value=77 Score=33.75 Aligned_cols=42 Identities=19% Similarity=0.204 Sum_probs=27.6
Q ss_pred hHHHHHHHHhhcCCcEE-EEecCCCCCCHHH----HH-HHHHHHHHcC
Q 010734 304 NLARHIANTKAYGANVV-VAVNMFATDSKAE----LN-AVRNAAMAAG 345 (502)
Q Consensus 304 NL~kHIeNi~~fGvPvV-VAINrF~tDT~~E----i~-~v~~~c~~~G 345 (502)
..+.|++-++.+|+|.+ |++|+...=+++| +. .++++.+..|
T Consensus 115 qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~ 162 (396)
T PRK00049 115 QTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence 45678999999999986 7999986432333 22 4455555444
No 145
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=43.21 E-value=88 Score=27.31 Aligned_cols=56 Identities=9% Similarity=-0.092 Sum_probs=32.2
Q ss_pred hcCCcEEEEecCCCCCCHHHHHHHHHHHHHc--CCCeEEEcCccccCccchhHHHHHH
Q 010734 314 AYGANVVVAVNMFATDSKAELNAVRNAAMAA--GAFDAVVCSHHAHGGKGAVDLGIAV 369 (502)
Q Consensus 314 ~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~--Gv~~~~vs~~wakGGeGa~eLA~~V 369 (502)
..+.|++++.|+.......+.+.+.+.++.. +-..+.+.+.=++=|+|-.++=+.+
T Consensus 98 ~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l 155 (158)
T cd00878 98 LKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWL 155 (158)
T ss_pred cCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHH
Confidence 4799999999998766544455555554432 1112233333444567776654443
No 146
>PLN02881 tetrahydrofolylpolyglutamate synthase
Probab=43.10 E-value=1.1e+02 Score=34.44 Aligned_cols=98 Identities=14% Similarity=0.211 Sum_probs=59.2
Q ss_pred HHHHHHHhcC--CCCeEEeeccccccccchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccH
Q 010734 218 ADKIALKLVG--PGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENV 295 (502)
Q Consensus 218 Atk~alkla~--~~dyvVTEAGFgaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl 295 (502)
-|-+|+...- .-||+|=|+|-|--+-+-.++ .+|+++|| ++|. + +-+
T Consensus 145 lTlla~~~F~~~~vD~aVlEvGlgGr~DaTnvi--------~~p~v~vI-TnIg-~---------------------DH~ 193 (530)
T PLN02881 145 LTLLAFKIFSAEQVDVAILEVGLGGRLDATNVV--------QKPVVCGI-TSLG-Y---------------------DHM 193 (530)
T ss_pred HHHHHHHHHHhCCCCEEEEEecCCCCchhhhcc--------CCCCEEEE-cccc-H---------------------HHH
Confidence 4455554332 239999999977655443321 14776655 3322 1 223
Q ss_pred HHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEc
Q 010734 296 ALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVC 352 (502)
Q Consensus 296 ~AL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs 352 (502)
+.|-..++...+|=..|-+-|+|+|.+- . .++-.+.+++.|++.|+. ..+.
T Consensus 194 ~~LG~Tle~IA~~KagI~k~g~p~vt~~----q-~~ea~~vl~~~A~e~~a~-l~~v 244 (530)
T PLN02881 194 EILGDTLGKIAGEKAGIFKPGVPAFTVP----Q-PDEAMRVLEERASELGVP-LQVV 244 (530)
T ss_pred HhhcCCHHHHHHHHHHHHhcCCCEEEeC----C-ChHHHHHHHHHHHHhCCc-EEEe
Confidence 3333345566667667778899998762 2 345567888999999996 5443
No 147
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=43.01 E-value=77 Score=33.06 Aligned_cols=50 Identities=12% Similarity=0.045 Sum_probs=37.2
Q ss_pred HhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEc
Q 010734 302 CVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVC 352 (502)
Q Consensus 302 ~~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs 352 (502)
+....+.|++++++|+++.|..- ....+.+|+..+.+++.++|+..+.+.
T Consensus 140 f~~~~~~i~~l~~~g~~v~i~~v-v~~~N~~~i~~~~~~~~~lgv~~i~~~ 189 (378)
T PRK05301 140 FAKKLAVARLVKAHGYPLTLNAV-IHRHNIDQIPRIIELAVELGADRLELA 189 (378)
T ss_pred HHHHHHHHHHHHHCCCceEEEEE-eecCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 44555567778888988766442 355788999999999999999755544
No 148
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=42.96 E-value=1.3e+02 Score=27.79 Aligned_cols=71 Identities=11% Similarity=-0.104 Sum_probs=41.7
Q ss_pred cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCC-CCccccCCCCC
Q 010734 315 YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVT-QPLKFLYPLDV 388 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~E--i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~-~~fk~LY~~~~ 388 (502)
.++|+|++.|+..--.+.+ .+...+++.+.|+. +..+. ++=|+|-.++-+.+++.+.... ....|.+..+.
T Consensus 105 ~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~S--Ak~~~~v~~l~~~l~~~l~~~~~~~~~~~~~~~~ 178 (190)
T cd04144 105 ADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCE-FIEAS--AKTNVNVERAFYTLVRALRQQRQGGQGPKGGPTK 178 (190)
T ss_pred CCCCEEEEEEChhccccCccCHHHHHHHHHHhCCE-EEEec--CCCCCCHHHHHHHHHHHHHHhhcccCCCcCCCCC
Confidence 5799999999965422222 22345667777874 44333 3337888888888877665321 12344554443
No 149
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=42.86 E-value=71 Score=28.11 Aligned_cols=54 Identities=26% Similarity=0.266 Sum_probs=35.0
Q ss_pred cCCcEEEEecCCCCCCHHHHHHH--HHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 010734 315 YGANVVVAVNMFATDSKAELNAV--RNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 371 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~Ei~~v--~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~ 371 (502)
.+.|+||++|+..-.+.+++... ...+...+.. +. ..=++-|+|-.+|.+.+..
T Consensus 119 ~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~--~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 119 TAKPVIYVLNKIDLDDAEELEEELVRELALEEGAE-VV--PISAKTEEGLDELIRAIYE 174 (176)
T ss_pred hhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCC-EE--EEehhhhcCHHHHHHHHHh
Confidence 58999999999877666665554 3333334443 33 3345677888888776654
No 150
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=42.33 E-value=66 Score=36.40 Aligned_cols=59 Identities=22% Similarity=0.273 Sum_probs=40.0
Q ss_pred HhhcCCcEEEEecCCCCCCHHHHH-HHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 312 TKAYGANVVVAVNMFATDSKAELN-AVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 312 i~~fGvPvVVAINrF~tDT~~Ei~-~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
+++.|+|+|+++|+..-....++. ...+++++.|+. +.... ++=|+|-.+|-+.+.+.+
T Consensus 95 l~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~p-vv~tS--A~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 95 LLELGIPMILALNLVDEAEKKGIRIDEEKLEERLGVP-VVPTS--ATEGRGIERLKDAIRKAI 154 (591)
T ss_pred HHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCC-EEEEE--CCCCCCHHHHHHHHHHHh
Confidence 345799999999997543222221 246677788985 43332 567899999998887764
No 151
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=42.31 E-value=2.5e+02 Score=29.44 Aligned_cols=149 Identities=18% Similarity=0.168 Sum_probs=96.5
Q ss_pred ccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCC-
Q 010734 251 KCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATD- 329 (502)
Q Consensus 251 kcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tD- 329 (502)
.-|.+|..|--|-.| |-|-.--. ....-|+-+.=++||.-|..-++--.++||+.|-+. .|+.|
T Consensus 29 ~~~~~g~~P~HVaFI-------MDGNRR~A-------Kk~~L~~~~GH~aGf~~l~~ile~C~~lGI~~vT~f-AFSieN 93 (271)
T KOG1602|consen 29 RLLARGPMPRHVAFI-------MDGNRRYA-------KKRGLETSEGHEAGFEALKEILELCKELGIKEVTVF-AFSIEN 93 (271)
T ss_pred HHHhcCCCcceeEEE-------ecCchHHH-------HhcCCCcccchHHHHHHHHHHHHHHHHcCCcEEEEE-EEehhh
Confidence 467889999877554 33332110 111124567789999999999999999999998654 34443
Q ss_pred ---CHHHHHHHHHHHH--------------HcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCC---CccccCCCCCC
Q 010734 330 ---SKAELNAVRNAAM--------------AAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQ---PLKFLYPLDVS 389 (502)
Q Consensus 330 ---T~~Ei~~v~~~c~--------------~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~---~fk~LY~~~~s 389 (502)
+++|++.+.+.++ +.|++ +-+---=+.=-+--.+.+++|+++.+++.. ..=+-|...+.
T Consensus 94 FkRs~eEVd~LM~L~~~k~~~~~~~~~~~~~~gvr-iriiGdlslL~~~l~k~i~~ieE~Tknn~~~~L~vcf~Ytsr~E 172 (271)
T KOG1602|consen 94 FKRSPEEVDGLMDLALEKIERLLEQGEKLDKYGVR-IRVIGDLSLLPESLRKAIKKIEEATKNNTRLILNVCFAYTSRDE 172 (271)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCeE-EEEEcchhhCCHHHHHHHHHHHHHhhcCCceEEEEEeccCcHHH
Confidence 6899988776554 25774 555433333444556677777777765322 13378999899
Q ss_pred HHHHHHHHHH-H-hCCCceeeCHHHHHHHHHHHH
Q 010734 390 IKEKIDTIAR-S-YGASGVEYSEEAEKQIEMYTG 421 (502)
Q Consensus 390 I~eKIe~IA~-I-YGA~~V~fS~~A~kqLk~ie~ 421 (502)
|-.-++.|++ . =|...+ .-++-.+|+
T Consensus 173 I~~a~r~~~~~~~~g~~~~------~i~~~~~e~ 200 (271)
T KOG1602|consen 173 ILHAVRGIVKRVKDGDIDV------DINLSDIEE 200 (271)
T ss_pred HHHHHHHHHHhhhcCCCcc------chhhHHHHH
Confidence 9988999998 4 444454 334445554
No 152
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=41.94 E-value=2.9e+02 Score=25.72 Aligned_cols=120 Identities=13% Similarity=0.136 Sum_probs=72.1
Q ss_pred HHHHHHhhcCCcEEEEe------------c--CCCCCCHHHHHHHHHHHHHcC-CCeEEEcCccccCccchhHHHHHHHH
Q 010734 307 RHIANTKAYGANVVVAV------------N--MFATDSKAELNAVRNAAMAAG-AFDAVVCSHHAHGGKGAVDLGIAVQR 371 (502)
Q Consensus 307 kHIeNi~~fGvPvVVAI------------N--rF~tDT~~Ei~~v~~~c~~~G-v~~~~vs~~wakGGeGa~eLA~~Vv~ 371 (502)
...+.+++.|+|+|..- | ++..+..++...+.+++.+.+ .+.+++... +. +-+.+.++.+.+
T Consensus 81 ~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~--~~-~~~~~~~~~~~~ 157 (298)
T cd06268 81 AAAPVAEEAGVPLISPGATSPALTGKGNPYVFRTAPSDAQQAAALADYLAEKGKVKKVAIIYD--DY-AYGRGLAAAFRE 157 (298)
T ss_pred hhHHHHHhCCCcEEccCCCCcccccCCCceEEEcccCcHHHHHHHHHHHHHhcCCCEEEEEEc--CC-chhHHHHHHHHH
Confidence 34566777899988641 1 124466778888999988877 655665432 22 234567777777
Q ss_pred HhhcCCCCc--cccCCC-CCCHHHHHHHHHHHhCCCceeeC---HHHHHHHHHHHHCCCCCCCeeE
Q 010734 372 ACENVTQPL--KFLYPL-DVSIKEKIDTIARSYGASGVEYS---EEAEKQIEMYTGQGFSGLPICM 431 (502)
Q Consensus 372 a~e~~~~~f--k~LY~~-~~sI~eKIe~IA~IYGA~~V~fS---~~A~kqLk~ie~~Gf~~LPVCm 431 (502)
+++...-++ ...|+. ..+....++.+.+- +.+.|... ..+..=++.+++.|+ +.||+.
T Consensus 158 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~-~~~~vi~~~~~~~~~~~~~~~~~~g~-~~~~~~ 221 (298)
T cd06268 158 ALKKLGGEVVAEETYPPGATDFSPLIAKLKAA-GPDAVFLAGYGGDAALFLKQAREAGL-KVPIVG 221 (298)
T ss_pred HHHHcCCEEEEEeccCCCCccHHHHHHHHHhc-CCCEEEEccccchHHHHHHHHHHcCC-CCcEEe
Confidence 776422111 122332 24566666665432 33444433 567888889999998 777765
No 153
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=41.72 E-value=1.2e+02 Score=27.43 Aligned_cols=60 Identities=15% Similarity=0.207 Sum_probs=33.9
Q ss_pred HHHHHHHHhhHHHHHHHHhhcCCcEEEEe----cCCCC-----CCHHHHH----HHHHHHHHcCCCeEEEcCcccc
Q 010734 295 VALVEAGCVNLARHIANTKAYGANVVVAV----NMFAT-----DSKAELN----AVRNAAMAAGAFDAVVCSHHAH 357 (502)
Q Consensus 295 l~AL~~G~~NL~kHIeNi~~fGvPvVVAI----NrF~t-----DT~~Ei~----~v~~~c~~~Gv~~~~vs~~wak 357 (502)
++...+ |+++=|+-+++.|.++|+.. +.... .+.++++ .++++|++.|+.-+-+.+.|.+
T Consensus 78 ~~~~~~---~~~~li~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~v~~vd~~~~~~~ 150 (183)
T cd04501 78 LEMIKD---NIRSMVELAEANGIKVILASPLPVDDYPWKPQWLRPANKLKSLNRWLKDYARENGLLFLDFYSPLLD 150 (183)
T ss_pred HHHHHH---HHHHHHHHHHHCCCcEEEEeCCCcCccccchhhcchHHHHHHHHHHHHHHHHHcCCCEEechhhhhc
Confidence 445554 55555666688898888764 22221 2234444 3778888888863333444433
No 154
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=41.68 E-value=1.9e+02 Score=25.68 Aligned_cols=56 Identities=21% Similarity=0.227 Sum_probs=29.9
Q ss_pred cCCcEEEEecCCCCCCHHH--------------HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHH
Q 010734 315 YGANVVVAVNMFATDSKAE--------------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 372 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~E--------------i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a 372 (502)
-++|+|++.|+......++ .+..+++++..+...+..+. ++=|+|-.+|-+.+++.
T Consensus 104 ~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~S--a~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 104 PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECS--AKTKEGVREVFEMATRA 173 (175)
T ss_pred CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEec--cccCcCHHHHHHHHHHH
Confidence 3799999999865422111 12234445555543333332 44456666666555543
No 155
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=41.66 E-value=3.9e+02 Score=27.07 Aligned_cols=156 Identities=18% Similarity=0.301 Sum_probs=93.5
Q ss_pred cchhccccccccCCCCCCeEEEEeeehhhhhc-CCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHh-hcCCcEE
Q 010734 243 GAEKFMNIKCRYSGLTPQCAVIVATIRALKMH-GGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTK-AYGANVV 320 (502)
Q Consensus 243 GaEKF~dIkcr~~gl~P~a~VlVaTvRALK~H-GG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~-~fGvPvV 320 (502)
+.||+++--.+..++.||.+-+ | ++ ||... ..+++ + ...++ .+|+|+|
T Consensus 13 ~~~~l~~~~~~l~~~~pd~isv--T-----~~~~~~~~------------~~t~~--------~---a~~l~~~~g~~~i 62 (272)
T TIGR00676 13 GEENLWETVDRLSPLDPDFVSV--T-----YGAGGSTR------------DRTVR--------I---VRRIKKETGIPTV 62 (272)
T ss_pred hHHHHHHHHHHHhcCCCCEEEe--c-----cCCCCCcH------------HHHHH--------H---HHHHHHhcCCCee
Confidence 3577777666778899998865 3 33 22221 11111 1 23344 4799998
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHcCCCeEE-EcCccccCc----cchhHHHHHHHHHhhcCCCCcc---ccCCC----CC
Q 010734 321 VAVNMFATDSKAELNAVRNAAMAAGAFDAV-VCSHHAHGG----KGAVDLGIAVQRACENVTQPLK---FLYPL----DV 388 (502)
Q Consensus 321 VAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~-vs~~wakGG----eGa~eLA~~Vv~a~e~~~~~fk---~LY~~----~~ 388 (502)
+=+---.. +.++++.....+.++|++.+. +.--...+| +|.-+-|-..++.+.+....|. -.|+. ..
T Consensus 63 ~Hlt~r~~-n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~ 141 (272)
T TIGR00676 63 PHLTCIGA-TREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAP 141 (272)
T ss_pred EEeeecCC-CHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCC
Confidence 86665543 678888888888999997654 444455555 2334445555565543212342 45655 35
Q ss_pred CHHHHHHHHHH--HhCCCce----eeCHHHHHHHH-HHHHCCCCCCCee
Q 010734 389 SIKEKIDTIAR--SYGASGV----EYSEEAEKQIE-MYTGQGFSGLPIC 430 (502)
Q Consensus 389 sI~eKIe~IA~--IYGA~~V----~fS~~A~kqLk-~ie~~Gf~~LPVC 430 (502)
+.++-++.+.+ -+||+-+ .|+..+-.++. ++++.|.+ +||-
T Consensus 142 ~~~~~~~~L~~K~~aGA~f~iTQ~~fd~~~~~~~~~~~~~~gi~-~PIi 189 (272)
T TIGR00676 142 NLEEDIENLKRKVDAGADYAITQLFFDNDDYYRFVDRCRAAGID-VPII 189 (272)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeccccCHHHHHHHHHHHHHcCCC-CCEe
Confidence 56666777776 5899744 48887766554 45667764 5653
No 156
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=41.65 E-value=86 Score=32.58 Aligned_cols=52 Identities=13% Similarity=-0.013 Sum_probs=41.1
Q ss_pred hhHHHHHHHHhhcCCcEEE--EecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCc
Q 010734 303 VNLARHIANTKAYGANVVV--AVNMFATDSKAELNAVRNAAMAAGAFDAVVCSH 354 (502)
Q Consensus 303 ~NL~kHIeNi~~fGvPvVV--AINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~ 354 (502)
+...+-|+++++.|+++.+ .+.+-..|+.++++.+.+++.+.|+....+...
T Consensus 214 ~~~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~ 267 (321)
T TIGR03822 214 AEARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHL 267 (321)
T ss_pred HHHHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEec
Confidence 4555667888899998866 577778899999999999999999975544433
No 157
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=41.44 E-value=1.7e+02 Score=28.72 Aligned_cols=126 Identities=14% Similarity=0.128 Sum_probs=70.7
Q ss_pred cCCcEEEEecCCCCC------CHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCC-CC
Q 010734 315 YGANVVVAVNMFATD------SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYP-LD 387 (502)
Q Consensus 315 fGvPvVVAINrF~tD------T~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~-~~ 387 (502)
-|..|+.+++-.+.+ ...|++.++..|+++|++-..+.-.|.. .+--.+|.+++.++.++ .+.-+.. ..
T Consensus 20 ~G~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~~~~-~~~~~~l~~~l~~~~~~---g~~~vv~G~i 95 (218)
T TIGR03679 20 EGHEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIETSGEK-EKEVEDLKGALKELKRE---GVEGIVTGAI 95 (218)
T ss_pred cCCEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEECCCCC-hHHHHHHHHHHHHHHHc---CCCEEEECCc
Confidence 455555454532221 2358899999999999963333222211 12223366666665543 2332221 11
Q ss_pred --CCHHHHHHHHHHHhCCCceeeCHHH----HHHHHHHHHCCCCCCCeeEeecCCCCCCCCCCCCCCCC
Q 010734 388 --VSIKEKIDTIARSYGASGVEYSEEA----EKQIEMYTGQGFSGLPICMAKTQYSFSHNAAEKGAPTG 450 (502)
Q Consensus 388 --~sI~eKIe~IA~IYGA~~V~fS~~A----~kqLk~ie~~Gf~~LPVCmAKTqySlSdDp~l~g~P~g 450 (502)
+-....++.+|.-.|-. .++|.. ++=++++.+.||.-.=||++...+ |+..+|++-+
T Consensus 96 ~sd~~~~~~e~v~~~~gl~--~~~PLw~~~~~el~~~~~~~G~~~~i~~v~~~~l----~~~~lG~~~~ 158 (218)
T TIGR03679 96 ASRYQKSRIERICEELGLK--VFAPLWGRDQEEYLRELVERGFRFIIVSVSAYGL----DESWLGREID 158 (218)
T ss_pred ccHhHHHHHHHHHHhCCCe--EEeehhcCCHHHHHHHHHHCCCEEEEEEEecCCC----ChHHCCCccC
Confidence 22466777777533332 344443 334666778899988899987653 4678888776
No 158
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=41.36 E-value=58 Score=32.98 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=20.5
Q ss_pred HHHHHHHhhcCCcEEEEecCCCCC
Q 010734 306 ARHIANTKAYGANVVVAVNMFATD 329 (502)
Q Consensus 306 ~kHIeNi~~fGvPvVVAINrF~tD 329 (502)
+++++.++++|+|++|+||+.-..
T Consensus 106 ~~~~~~~~~~~~p~ivviNK~D~~ 129 (270)
T cd01886 106 ETVWRQADRYNVPRIAFVNKMDRT 129 (270)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCC
Confidence 567888889999999999997653
No 159
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=41.30 E-value=74 Score=27.91 Aligned_cols=55 Identities=24% Similarity=0.071 Sum_probs=33.2
Q ss_pred cCCcEEEEecCCCCCCHHHHHH--HHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHH
Q 010734 315 YGANVVVAVNMFATDSKAELNA--VRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 372 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~Ei~~--v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a 372 (502)
.++|+||++|+.....+.++.. ...+....+.. +..+. ++=|.|-.+|-+.+.+.
T Consensus 106 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 106 KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLK-FFKTS--ALRGVGYEEPFESLARA 162 (164)
T ss_pred CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCe-EEEEe--CCCCCChHHHHHHHHHH
Confidence 5799999999985533333322 23455556663 33333 44567877777666654
No 160
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=41.23 E-value=1.4e+02 Score=25.71 Aligned_cols=56 Identities=18% Similarity=0.242 Sum_probs=34.1
Q ss_pred hhcCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 010734 313 KAYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 371 (502)
Q Consensus 313 ~~fGvPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~ 371 (502)
...++|++|+.|+..-.... ..+.+.+.+++.+..-+.+| ++=|+|-.++-+.+.+
T Consensus 102 ~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s---~~~~~gi~~~~~~l~~ 159 (162)
T cd04123 102 RGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETS---AKTGKGIEELFLSLAK 159 (162)
T ss_pred CCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEe---CCCCCCHHHHHHHHHH
Confidence 33489999999997654222 12345556667777423333 5666777777666544
No 161
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=40.63 E-value=66 Score=31.82 Aligned_cols=42 Identities=10% Similarity=0.029 Sum_probs=25.8
Q ss_pred HHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010734 306 ARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 347 (502)
Q Consensus 306 ~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~ 347 (502)
.++++.++.+|+|.++++|+.......--+.+.+..+..|..
T Consensus 106 ~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~ 147 (268)
T cd04170 106 EKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAFGRP 147 (268)
T ss_pred HHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHHhCCC
Confidence 345556678899999999998755432222333333345664
No 162
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=40.31 E-value=3.1e+02 Score=27.37 Aligned_cols=68 Identities=16% Similarity=0.064 Sum_probs=41.0
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCcc-----ccCccch-----hHHHHHHHHHh
Q 010734 304 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHH-----AHGGKGA-----VDLGIAVQRAC 373 (502)
Q Consensus 304 NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~w-----akGGeGa-----~eLA~~Vv~a~ 373 (502)
-+++.+..++..+.|++ +|-+. .+.+|+....+.+++.+ ..+-++=+- .++|.|+ .++..++++++
T Consensus 60 ~~~~~~~~~~~~~~p~~--vqi~g-~~~~~~~~aa~~~~~~~-~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~av 135 (233)
T cd02911 60 FIEGEIKALKDSNVLVG--VNVRS-SSLEPLLNAAALVAKNA-AILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKAL 135 (233)
T ss_pred HHHHHHHHhhccCCeEE--EEecC-CCHHHHHHHHHHHhhcC-CEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHH
Confidence 34445555666677655 56564 45577777777776643 334444343 2557788 67777777777
Q ss_pred hc
Q 010734 374 EN 375 (502)
Q Consensus 374 e~ 375 (502)
.+
T Consensus 136 r~ 137 (233)
T cd02911 136 KE 137 (233)
T ss_pred Hh
Confidence 54
No 163
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=40.27 E-value=2.5e+02 Score=28.00 Aligned_cols=36 Identities=31% Similarity=0.319 Sum_probs=26.7
Q ss_pred chhcccccHHHHHHHHhhHHHHHHHHhh--cCCcEEEE
Q 010734 287 DHAYLNENVALVEAGCVNLARHIANTKA--YGANVVVA 322 (502)
Q Consensus 287 ~~~l~~eNl~AL~~G~~NL~kHIeNi~~--fGvPvVVA 322 (502)
-+++-++|.+.+.+-+..|.+-++.... -+.++|+.
T Consensus 122 ~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~~~~~~v~~ 159 (264)
T cd01020 122 NKKYYQANAKKFVASLKPLAAKIAELSAKYKGAPVAAT 159 (264)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEe
Confidence 3566678999999999999999988744 34555553
No 164
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=40.27 E-value=1.2e+02 Score=31.76 Aligned_cols=63 Identities=19% Similarity=0.124 Sum_probs=40.7
Q ss_pred HHHHhhcCCcEEEEecCCCCC-CHHHHHHHHHHHHHc-----CCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 309 IANTKAYGANVVVAVNMFATD-SKAELNAVRNAAMAA-----GAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 309 IeNi~~fGvPvVVAINrF~tD-T~~Ei~~v~~~c~~~-----Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
+..+.+.|.|+||++|+..-. .+++.+.+.+..++. ++. +..+ =|+=|+|-.+|-+.+.+..+
T Consensus 276 ~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-vi~~--SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 276 AGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAP-IVFI--SALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred HHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCc-eEEE--eCCCCCCHHHHHHHHHHHHH
Confidence 444566899999999998653 556666666655532 232 3333 34557788777777777665
No 165
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=39.97 E-value=1.7e+02 Score=28.12 Aligned_cols=56 Identities=11% Similarity=0.070 Sum_probs=36.4
Q ss_pred cCCcEEEEecCCCCCCHHHH--HHHHHHHHHc-CCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 315 YGANVVVAVNMFATDSKAEL--NAVRNAAMAA-GAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~Ei--~~v~~~c~~~-Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
-++|+|++.|+-.-..+.|+ +...++|++. +.. +..+ =|+-|+|-.++=+.+++.+
T Consensus 104 ~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~-~~et--SAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 104 EDAELLLVGNKLDCETDREISRQQGEKFAQQITGMR-FCEA--SAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred CCCcEEEEEECcccccccccCHHHHHHHHHhcCCCE-EEEe--cCCCCCCHHHHHHHHHHHH
Confidence 47999999999754333333 3456677764 653 3333 3788888888766666554
No 166
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=39.97 E-value=73 Score=34.28 Aligned_cols=79 Identities=9% Similarity=0.146 Sum_probs=57.9
Q ss_pred ehhhhhcCCCCCccCCCCCchhcccccHHHHHHHH--hhHHHHHHHHhhcCCcEE-E-EecCCCCCCHHHHHHHHHHHHH
Q 010734 268 IRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGC--VNLARHIANTKAYGANVV-V-AVNMFATDSKAELNAVRNAAMA 343 (502)
Q Consensus 268 vRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~--~NL~kHIeNi~~fGvPvV-V-AINrF~tDT~~Ei~~v~~~c~~ 343 (502)
+++||-. |+....+| .+....+-+..+.++. +...+-|+.++++|+++| + .|=-+|.+|.++++.-.+++.+
T Consensus 144 l~~l~~~-G~~rvslG---vQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~ 219 (430)
T PRK08208 144 LALLAAR-GVNRLSIG---VQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQTHASWMESLDQALV 219 (430)
T ss_pred HHHHHHc-CCCEEEEe---cccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHh
Confidence 5666665 56666666 2556566677777763 456667888889999875 3 3557899999999999999999
Q ss_pred cCCCeEE
Q 010734 344 AGAFDAV 350 (502)
Q Consensus 344 ~Gv~~~~ 350 (502)
+|+..+.
T Consensus 220 l~~~~is 226 (430)
T PRK08208 220 YRPEELF 226 (430)
T ss_pred CCCCEEE
Confidence 9986443
No 167
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=39.94 E-value=86 Score=27.88 Aligned_cols=33 Identities=9% Similarity=-0.030 Sum_probs=26.8
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010734 315 YGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 347 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~ 347 (502)
.+.|+++++|+-.--.+++++...+++++.|..
T Consensus 41 ~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ 73 (141)
T cd01857 41 PRKKNILLLNKADLLTEEQRKAWAEYFKKEGIV 73 (141)
T ss_pred CCCcEEEEEechhcCCHHHHHHHHHHHHhcCCe
Confidence 478999999998766677887777888888864
No 168
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=39.53 E-value=1.7e+02 Score=30.60 Aligned_cols=56 Identities=21% Similarity=0.135 Sum_probs=38.1
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHH-HHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 315 YGANVVVAVNMFATDSKAELNAVRN-AAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~Ei~~v~~-~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
.+.|+||++|+..-..+++++.+.+ ++++.+.. +.... ++=|+|-.+|-+.+.+.+
T Consensus 272 ~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~-vi~iS--Aktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 272 AEKPRIVVLNKIDLLDEEELAELLKELKKALGKP-VFPIS--ALTGEGLDELLYALAELL 328 (329)
T ss_pred ccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCc-EEEEE--ccCCcCHHHHHHHHHHHh
Confidence 4789999999987666666655544 45566764 44333 455788888888777654
No 169
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=39.49 E-value=1.3e+02 Score=27.01 Aligned_cols=64 Identities=8% Similarity=0.102 Sum_probs=42.3
Q ss_pred hhHHHHHHHHhhcC-CcEEEEec-CCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHH
Q 010734 303 VNLARHIANTKAYG-ANVVVAVN-MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLG 366 (502)
Q Consensus 303 ~NL~kHIeNi~~fG-vPvVVAIN-rF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA 366 (502)
.+..+-|+.+++.| +++.+-+= -++.++.+++..+.+++++.|+..+.+.......|-...+..
T Consensus 136 ~~~~~~i~~~~~~g~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~t~~~~~~ 201 (216)
T smart00729 136 EDVLEAVEKLREAGPIKVSTDLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRPGTPLAKLY 201 (216)
T ss_pred HHHHHHHHHHHHhCCcceEEeEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeeeeCCCChHHHhc
Confidence 44555566666677 55544332 245689999999999999999975666555555555544433
No 170
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=39.12 E-value=1.3e+02 Score=28.20 Aligned_cols=72 Identities=8% Similarity=0.051 Sum_probs=45.2
Q ss_pred HhhH-HHHHHHHhhc--CCcEEEEecCCCCCCH------------HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHH
Q 010734 302 CVNL-ARHIANTKAY--GANVVVAVNMFATDSK------------AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLG 366 (502)
Q Consensus 302 ~~NL-~kHIeNi~~f--GvPvVVAINrF~tDT~------------~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA 366 (502)
|.|+ .+.++.++++ ++|+|++-|+-.-..+ -+-+...++|++.|.. ...+.=|+=|+|-.++=
T Consensus 88 f~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~--~~~E~SAk~~~nV~~~F 165 (176)
T cd04133 88 YENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAA--AYIECSSKTQQNVKAVF 165 (176)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCC--EEEECCCCcccCHHHHH
Confidence 4444 3445555543 7999999998543111 1234456778887763 23356678889988888
Q ss_pred HHHHHHhhc
Q 010734 367 IAVQRACEN 375 (502)
Q Consensus 367 ~~Vv~a~e~ 375 (502)
+.+++.+.+
T Consensus 166 ~~~~~~~~~ 174 (176)
T cd04133 166 DAAIKVVLQ 174 (176)
T ss_pred HHHHHHHhc
Confidence 887776543
No 171
>PF07005 DUF1537: Protein of unknown function, DUF1537; InterPro: IPR010737 This entry represents a conserved region found in a range of Proteobacteria as well as the Gram-positive Oceanobacillus iheyensis. This entry includes YgbK from Escherichia coli, which is dependent upon FlhDC, the master regulator of the flagellar genes. The ygbK gene appears to be regulated by sigmaF [].; PDB: 3DQQ_B 1YZY_B.
Probab=38.85 E-value=26 Score=33.75 Aligned_cols=69 Identities=26% Similarity=0.344 Sum_probs=49.4
Q ss_pred ccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHH
Q 010734 293 ENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 372 (502)
Q Consensus 293 eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a 372 (502)
=+++.|++|-..|..+++++++-|..+|| |..-|++.++.|.+.+.+.+.. . .|..+|- ||.++.+.
T Consensus 9 i~l~~v~~g~~~l~~~l~~~~~~g~~ivV----~Da~t~~DL~~ia~a~~~~~~~-~----l~vGsag----la~aL~~~ 75 (223)
T PF07005_consen 9 IDLEDVRRGPEALSAALAALQAEGARIVV----FDAETDEDLDAIAEALLELGRR-V----LWVGSAG----LAAALARA 75 (223)
T ss_dssp E-HHHHCC-HHHHHHHHHHHHHTTECEEE----E-BSSCHHHHHHHHHCTT-S--------EEEESCH----HHHHHHHH
T ss_pred EEHHHHhCcHHHHHHHHHHHHhCCCcEEE----EecCCHHHHHHHHHHHHhCCCc-e----EEecchH----HHHHHHhh
Confidence 36788999999999999999999999998 7899999999999999888764 2 4443333 55555554
Q ss_pred hh
Q 010734 373 CE 374 (502)
Q Consensus 373 ~e 374 (502)
..
T Consensus 76 ~~ 77 (223)
T PF07005_consen 76 LA 77 (223)
T ss_dssp HH
T ss_pred hc
Confidence 44
No 172
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=38.43 E-value=67 Score=34.67 Aligned_cols=94 Identities=11% Similarity=0.054 Sum_probs=63.7
Q ss_pred cccCCCCCCeEEEEeeehhhhhcC-CCCCccCCCCCchhcccccHHHHHHHHhh--HHHHHHHHhhcCCcEEEE---ecC
Q 010734 252 CRYSGLTPQCAVIVATIRALKMHG-GGPQVVAGKPLDHAYLNENVALVEAGCVN--LARHIANTKAYGANVVVA---VNM 325 (502)
Q Consensus 252 cr~~gl~P~a~VlVaTvRALK~HG-G~~~~~~~~pl~~~l~~eNl~AL~~G~~N--L~kHIeNi~~fGvPvVVA---INr 325 (502)
+|.+...|+-+ -=-.+++|+-+| |+....+| .+..+.+-+..+.++... ..+=|+.+++.|..+.+. |-=
T Consensus 222 ir~~~~~p~~i-~~ell~~l~~~~~g~~~l~ig---vQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~~~i~i~~d~IvG 297 (440)
T PRK14334 222 VKFTTSHPMNF-TDDVIAAMAETPAVCEYIHLP---VQSGSDRVLRRMAREYRREKYLERIAEIREALPDVVLSTDIIVG 297 (440)
T ss_pred EEEccCCcccC-CHHHHHHHHhcCcCCCeEEec---cccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEE
Confidence 45554555432 123466777665 56666655 255566667777777543 667788888887665443 346
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeE
Q 010734 326 FATDSKAELNAVRNAAMAAGAFDA 349 (502)
Q Consensus 326 F~tDT~~Ei~~v~~~c~~~Gv~~~ 349 (502)
||.+|+++++...+++++.+...+
T Consensus 298 ~PgEt~ed~~~tl~~i~~l~~~~i 321 (440)
T PRK14334 298 FPGETEEDFQETLSLYDEVGYDSA 321 (440)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEe
Confidence 999999999999999999998643
No 173
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=38.36 E-value=1.3e+02 Score=26.61 Aligned_cols=66 Identities=8% Similarity=0.059 Sum_probs=39.8
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 010734 304 NLARHIANTKAYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 371 (502)
Q Consensus 304 NL~kHIeNi~~fGvPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~ 371 (502)
+...++......++|++|+.|+-.-.... ..+..++++++.+...+.. .=++=|+|-.++-+.+.+
T Consensus 96 ~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e--~Sa~~~~~v~~~~~~l~~ 163 (165)
T cd01864 96 HWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLE--TSAKESQNVEEAFLLMAT 163 (165)
T ss_pred HHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEE--EECCCCCCHHHHHHHHHH
Confidence 44444554456789999999986542222 3356677888777643332 223446777776666543
No 174
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=37.85 E-value=2.4e+02 Score=28.70 Aligned_cols=68 Identities=19% Similarity=0.192 Sum_probs=43.4
Q ss_pred hhcccccHHHHHHHHhhHHHHHHHHhh--------------------cCCcEEE--EecCCCCCCHHHHHHHHHHHHHcC
Q 010734 288 HAYLNENVALVEAGCVNLARHIANTKA--------------------YGANVVV--AVNMFATDSKAELNAVRNAAMAAG 345 (502)
Q Consensus 288 ~~l~~eNl~AL~~G~~NL~kHIeNi~~--------------------fGvPvVV--AINrF~tDT~~Ei~~v~~~c~~~G 345 (502)
.++-++|.+++.+=+..|.+-++...+ ||+.++- .++.-..=|..+|..+.+.+++.+
T Consensus 149 ~~~y~~N~~~~~~~L~~l~~~~~~~~~~~~~~~~v~~H~af~Yl~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~ 228 (286)
T cd01019 149 AATYAANLEAFNARLAELDATIKERLAPVKTKPFFVFHDAYGYFEKRYGLTQAGVFTIDPEIDPGAKRLAKIRKEIKEKG 228 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEecccHHHHHHHcCCceeeeecCCCCCCCCHHHHHHHHHHHHHcC
Confidence 456678888998888888888776422 4444332 222334456677777777777777
Q ss_pred CCeEEEcCccc
Q 010734 346 AFDAVVCSHHA 356 (502)
Q Consensus 346 v~~~~vs~~wa 356 (502)
+. +++++...
T Consensus 229 v~-~If~e~~~ 238 (286)
T cd01019 229 AT-CVFAEPQF 238 (286)
T ss_pred Cc-EEEecCCC
Confidence 74 66666554
No 175
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=37.80 E-value=99 Score=31.93 Aligned_cols=55 Identities=13% Similarity=0.106 Sum_probs=35.9
Q ss_pred hhHHHHHHHHhhcCC-cEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccC
Q 010734 303 VNLARHIANTKAYGA-NVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHG 358 (502)
Q Consensus 303 ~NL~kHIeNi~~fGv-PvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakG 358 (502)
....+.|+.+++.|+ ++.+-.=-.+..+++|+..+.+++++.|+. +.+.+...-|
T Consensus 140 ~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi~-~~~ie~mP~g 195 (329)
T PRK13361 140 ERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGLD-IAFIEEMPLG 195 (329)
T ss_pred HHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcCCe-EEEEecccCC
Confidence 344445566667787 553321123556789999999999999995 6666555444
No 176
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=37.72 E-value=75 Score=28.86 Aligned_cols=58 Identities=9% Similarity=0.001 Sum_probs=36.5
Q ss_pred cCCcEEEEecCCCCCCHHHH--HHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 315 YGANVVVAVNMFATDSKAEL--NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~Ei--~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
.++|+++++|+..-....+. ....+++++.|..... +.=++=|+|-.+|-+.+++.+-
T Consensus 107 ~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 107 GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPL--HFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCE--EEEeccCccHHHHHHHHHHHhh
Confidence 48999999999865322221 2345677777763222 2234556788888887777653
No 177
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=37.43 E-value=1.4e+02 Score=27.31 Aligned_cols=55 Identities=13% Similarity=-0.023 Sum_probs=30.1
Q ss_pred CCcEEEEecCCCCCCHHHH--------------HHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHH
Q 010734 316 GANVVVAVNMFATDSKAEL--------------NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 372 (502)
Q Consensus 316 GvPvVVAINrF~tDT~~Ei--------------~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a 372 (502)
++|+|++.|+..-..++|+ +...+++++.|...+. +.=++=|+|-.++-+.++.+
T Consensus 105 ~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~--e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 105 KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYV--ECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred CCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEE--EecCCCCCCHHHHHHHHHHH
Confidence 7999999998753222221 1223455555531232 33345567777766666553
No 178
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=37.20 E-value=73 Score=34.03 Aligned_cols=77 Identities=4% Similarity=-0.024 Sum_probs=54.5
Q ss_pred ehhhhhcC-CCCCccCCCCCchhcccccHHHHHHHH--hhHHHHHHHHhhcCCcEEE---EecCCCCCCHHHHHHHHHHH
Q 010734 268 IRALKMHG-GGPQVVAGKPLDHAYLNENVALVEAGC--VNLARHIANTKAYGANVVV---AVNMFATDSKAELNAVRNAA 341 (502)
Q Consensus 268 vRALK~HG-G~~~~~~~~pl~~~l~~eNl~AL~~G~--~NL~kHIeNi~~fGvPvVV---AINrF~tDT~~Ei~~v~~~c 341 (502)
+++++-.| |+....+| .+..+++-+..+.++. ....+-|+.+++.|-.+.| -|--||.+|+++++...+++
T Consensus 239 l~~m~~~~~~~~~l~ig---iES~s~~vLk~m~R~~~~~~~~~~i~~lr~~~~~i~i~~~~IvG~PgET~ed~~~tl~~i 315 (429)
T TIGR00089 239 IELIAENPKVCKHLHLP---VQSGSDRILKRMNRKYTREEYLDIVEKIRAKIPDAAITTDIIVGFPGETEEDFEETLDLV 315 (429)
T ss_pred HHHHHhCCCccCceeec---cccCChHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEeeEEEECCCCCHHHHHHHHHHH
Confidence 35666665 56666666 3566677777777763 3555677788887722333 35569999999999999999
Q ss_pred HHcCCC
Q 010734 342 MAAGAF 347 (502)
Q Consensus 342 ~~~Gv~ 347 (502)
++.+..
T Consensus 316 ~~~~~~ 321 (429)
T TIGR00089 316 EEVKFD 321 (429)
T ss_pred HhcCCC
Confidence 999875
No 179
>PRK01060 endonuclease IV; Provisional
Probab=37.16 E-value=1.4e+02 Score=29.38 Aligned_cols=95 Identities=16% Similarity=0.117 Sum_probs=54.9
Q ss_pred cccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEe-cCCC-CCCHH-HHHH----HHHHHH-HcCCCeEEEcCccccCccc
Q 010734 290 YLNENVALVEAGCVNLARHIANTKAYGANVVVAV-NMFA-TDSKA-ELNA----VRNAAM-AAGAFDAVVCSHHAHGGKG 361 (502)
Q Consensus 290 l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAI-NrF~-tDT~~-Ei~~----v~~~c~-~~Gv~~~~vs~~wakGGeG 361 (502)
+..+|-+-.++....++++|+-.+++|.+.||.- -.+. ..+.+ -++. +.+.++ +.|+ ..++-++|..+..-
T Consensus 76 l~~~d~~~r~~s~~~~~~~i~~A~~lga~~vv~h~G~~~~~~~~~~~~~~~~e~l~~l~~~~~gv-~l~iEn~~~~~~~~ 154 (281)
T PRK01060 76 LGNPNKEILEKSRDFLIQEIERCAALGAKLLVFHPGSHLGDIDEEDCLARIAESLNEALDKTQGV-TIVLENTAGQGSEL 154 (281)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcHHHHHHHHHHHHHHHHhcCCCC-EEEEecCCCCCCcc
Confidence 3456777888889999999999999999987762 1221 12222 3333 333332 3577 48888887665321
Q ss_pred --hhHHHHHHHHHhhcCCCCccccCCC
Q 010734 362 --AVDLGIAVQRACENVTQPLKFLYPL 386 (502)
Q Consensus 362 --a~eLA~~Vv~a~e~~~~~fk~LY~~ 386 (502)
..+-...+++.++. ++.+.+.+|.
T Consensus 155 ~~~~~~~~~l~~~v~~-~~~vg~~lD~ 180 (281)
T PRK01060 155 GRRFEELARIIDGVED-KSRVGVCLDT 180 (281)
T ss_pred cCCHHHHHHHHHhcCC-cccEEEEEeH
Confidence 12223345555543 2225555543
No 180
>PRK12736 elongation factor Tu; Reviewed
Probab=37.08 E-value=1.6e+02 Score=31.31 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=28.9
Q ss_pred HHHHHHHHhhcCCc-EEEEecCCCCCCHHH----HH-HHHHHHHHcCC
Q 010734 305 LARHIANTKAYGAN-VVVAVNMFATDSKAE----LN-AVRNAAMAAGA 346 (502)
Q Consensus 305 L~kHIeNi~~fGvP-vVVAINrF~tDT~~E----i~-~v~~~c~~~Gv 346 (502)
-+.|+..++.+|+| .||++|+...-+++| +. .+++++++.|.
T Consensus 116 t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 116 TREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 45788889999999 579999986433333 22 55666666663
No 181
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=36.88 E-value=1.4e+02 Score=27.28 Aligned_cols=69 Identities=9% Similarity=0.009 Sum_probs=41.1
Q ss_pred hhHHHHHHHHhhc--CCcEEEEecCCCCCCHH----H--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 303 VNLARHIANTKAY--GANVVVAVNMFATDSKA----E--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 303 ~NL~kHIeNi~~f--GvPvVVAINrF~tDT~~----E--i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
.++..-++.++.+ ++|+++++|+..-.... + .+.+.+++.+.++. +. +.=++=|+|-.+|-+.+.+.+-
T Consensus 90 ~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~-~~--~~Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 90 ERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQ-HF--ETSSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCe-EE--EEeCCCCCCHHHHHHHHHHHHH
Confidence 3333334444443 79999999997642211 1 23456677777774 33 3334556788887777776553
No 182
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=36.73 E-value=1.2e+02 Score=29.27 Aligned_cols=107 Identities=18% Similarity=0.153 Sum_probs=65.5
Q ss_pred HHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc-C
Q 010734 298 VEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN-V 376 (502)
Q Consensus 298 L~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~-~ 376 (502)
.+..+.++.++++-.++.|..+.+..-....=+++++..+.+.+.++|+..+.+++...-. .-+-...+++.+.+ -
T Consensus 103 ~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~---~P~~v~~lv~~~~~~~ 179 (237)
T PF00682_consen 103 REEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLADTVGIM---TPEDVAELVRALREAL 179 (237)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS-S----HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCccCCc---CHHHHHHHHHHHHHhc
Confidence 4566788999999999999999777766666678999999999999999888888765332 22222233333332 1
Q ss_pred C-CCccccCCCCCCHHHHHHHHHH-HhCCCceee
Q 010734 377 T-QPLKFLYPLDVSIKEKIDTIAR-SYGASGVEY 408 (502)
Q Consensus 377 ~-~~fk~LY~~~~sI~eKIe~IA~-IYGA~~V~f 408 (502)
+ -.+.+=.-.+.-+- =-+.++- -+|++.|+-
T Consensus 180 ~~~~l~~H~Hnd~Gla-~An~laA~~aGa~~id~ 212 (237)
T PF00682_consen 180 PDIPLGFHAHNDLGLA-VANALAALEAGADRIDG 212 (237)
T ss_dssp TTSEEEEEEBBTTS-H-HHHHHHHHHTT-SEEEE
T ss_pred cCCeEEEEecCCccch-hHHHHHHHHcCCCEEEc
Confidence 2 22222122233332 2456666 788887753
No 183
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=36.60 E-value=63 Score=36.49 Aligned_cols=41 Identities=24% Similarity=0.261 Sum_probs=25.8
Q ss_pred HHHHHHHhhcCC-cEEEEecCCCCC--CHHHHHHHH----HHHHHcCC
Q 010734 306 ARHIANTKAYGA-NVVVAVNMFATD--SKAELNAVR----NAAMAAGA 346 (502)
Q Consensus 306 ~kHIeNi~~fGv-PvVVAINrF~tD--T~~Ei~~v~----~~c~~~Gv 346 (502)
+.|+..++.+|+ |+||++|+...- ++++++.+. ++.++.|.
T Consensus 146 ~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~ 193 (632)
T PRK05506 146 RRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGL 193 (632)
T ss_pred HHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCC
Confidence 457778888887 477899997542 344455443 33345564
No 184
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=36.18 E-value=4.5e+02 Score=26.23 Aligned_cols=103 Identities=21% Similarity=0.232 Sum_probs=54.1
Q ss_pred HHhhHHHHHHHHhh--cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCcc---ccCccc---hhHHHHHHHHH
Q 010734 301 GCVNLARHIANTKA--YGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHH---AHGGKG---AVDLGIAVQRA 372 (502)
Q Consensus 301 G~~NL~kHIeNi~~--fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~w---akGGeG---a~eLA~~Vv~a 372 (502)
|...+.++|...++ .+.|++|-|+-. +.+|+....+.+++.|+. ++.-+.. ..++.+ -.++..++++.
T Consensus 81 g~~~~~~~i~~~~~~~~~~pvi~si~g~---~~~~~~~~a~~~~~~G~d-~ielN~~cP~~~~~~~~~~~~~~~~eiv~~ 156 (289)
T cd02810 81 GLDVWLQDIAKAKKEFPGQPLIASVGGS---SKEDYVELARKIERAGAK-ALELNLSCPNVGGGRQLGQDPEAVANLLKA 156 (289)
T ss_pred CHHHHHHHHHHHHhccCCCeEEEEeccC---CHHHHHHHHHHHHHhCCC-EEEEEcCCCCCCCCcccccCHHHHHHHHHH
Confidence 44445556665555 488988888655 567887778888888885 4432221 222222 12344445554
Q ss_pred hhcCCCCccccCC--CCCCHHHHHHHHHH---HhCCCceeeC
Q 010734 373 CENVTQPLKFLYP--LDVSIKEKIDTIAR---SYGASGVEYS 409 (502)
Q Consensus 373 ~e~~~~~fk~LY~--~~~sI~eKIe~IA~---IYGA~~V~fS 409 (502)
+.+.- ++-.... ...+. +.+..+|+ -.|++.|+.+
T Consensus 157 vr~~~-~~pv~vKl~~~~~~-~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 157 VKAAV-DIPLLVKLSPYFDL-EDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred HHHcc-CCCEEEEeCCCCCH-HHHHHHHHHHHHcCCCEEEEE
Confidence 44311 1111111 11232 33555665 4788888764
No 185
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=35.78 E-value=1.4e+02 Score=26.51 Aligned_cols=57 Identities=12% Similarity=-0.047 Sum_probs=37.4
Q ss_pred cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 315 YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~E--i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
-+.|++|+.|+-.-..+.+ .+...++++..|.. +. +.=++=|+|-.+|-+.+++.+.
T Consensus 105 ~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~--~~Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 105 DNAQVILVGNKCDMEDERVVSSERGRQLADQLGFE-FF--EASAKENINVKQVFERLVDIIC 163 (165)
T ss_pred CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCE-EE--EEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999865433222 23445667777874 33 3345778888888888776553
No 186
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=35.72 E-value=2.3e+02 Score=27.30 Aligned_cols=60 Identities=23% Similarity=0.197 Sum_probs=39.3
Q ss_pred ccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCC--CCCC-----------HHHHHHHHHHHHHcCCCeEEEcC
Q 010734 293 ENVALVEAGCVNLARHIANTKAYGANVVVAVNMF--ATDS-----------KAELNAVRNAAMAAGAFDAVVCS 353 (502)
Q Consensus 293 eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAINrF--~tDT-----------~~Ei~~v~~~c~~~Gv~~~~vs~ 353 (502)
++-...++++..++++|+..+++|.++||..--+ ..+. .+-++.+.++|++.|+. ..+-.
T Consensus 74 ~~~~~~~~~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~i~-l~~e~ 146 (274)
T COG1082 74 PDEEEREEALEELKRAIELAKELGAKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEIAEELGIG-LALEN 146 (274)
T ss_pred CchhhHHHHHHHHHHHHHHHHHcCCCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHHHHHhCCc-eEEee
Confidence 3444458888999999999999999988754421 1111 23344555666777885 55554
No 187
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=35.24 E-value=2.9e+02 Score=27.80 Aligned_cols=99 Identities=19% Similarity=0.160 Sum_probs=61.4
Q ss_pred hhHHHHHHHHhhcCCcEEEEecCCC-CCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCcc
Q 010734 303 VNLARHIANTKAYGANVVVAVNMFA-TDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLK 381 (502)
Q Consensus 303 ~NL~kHIeNi~~fGvPvVVAINrF~-tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk 381 (502)
.++.+.++..++.|..+|+..-.|. +.+.+|+..+.+.|++.|+. ++=--..++.-+-..+|-+...+.-+.. . -.
T Consensus 122 ~~~~~l~~~~~~~~~kvI~S~H~f~~tP~~~~l~~~~~~~~~~gaD-ivKia~~a~~~~D~~~ll~~~~~~~~~~-~-~~ 198 (253)
T PRK02412 122 DVVKEMVAFAHEHGVKVVLSYHDFEKTPPKEEIVERLRKMESLGAD-IVKIAVMPQSEQDVLTLLNATREMKELY-A-DQ 198 (253)
T ss_pred HHHHHHHHHHHHcCCEEEEeeCCCCCCcCHHHHHHHHHHHHHhCCC-EEEEEecCCCHHHHHHHHHHHHHHHhcC-C-CC
Confidence 3566677778888999988776664 44557888888888888973 5444456666655555554333221110 1 12
Q ss_pred ccCCCCCCHHHHHHHHHH-HhCCC
Q 010734 382 FLYPLDVSIKEKIDTIAR-SYGAS 404 (502)
Q Consensus 382 ~LY~~~~sI~eKIe~IA~-IYGA~ 404 (502)
|+=-..|.-.-|+..|+- +||..
T Consensus 199 P~i~~~MG~~G~~SRil~~~~GS~ 222 (253)
T PRK02412 199 PLITMSMGKLGRISRLAGEVFGSS 222 (253)
T ss_pred CEEEEeCCCCchHHHcchhhhCCc
Confidence 333344555677888887 88754
No 188
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=35.11 E-value=1.6e+02 Score=25.44 Aligned_cols=59 Identities=20% Similarity=0.144 Sum_probs=34.7
Q ss_pred HHHhhcCCcEEEEecCCCCCCH--HHHHHHHHHHHH-cC----CCeEEEcCccccCccchhHHHHHHHH
Q 010734 310 ANTKAYGANVVVAVNMFATDSK--AELNAVRNAAMA-AG----AFDAVVCSHHAHGGKGAVDLGIAVQR 371 (502)
Q Consensus 310 eNi~~fGvPvVVAINrF~tDT~--~Ei~~v~~~c~~-~G----v~~~~vs~~wakGGeGa~eLA~~Vv~ 371 (502)
+.+...+.|+++++|+..-..+ ++.+.+.+..++ .+ .. +. ..=++-|+|-.++-+.+.+
T Consensus 107 ~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 107 GLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAP-IV--FISALTGQGVDKLFDAIDE 172 (174)
T ss_pred HHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCc-eE--EEeccCCCCHHHHHHHHHH
Confidence 3445578999999999754333 566666665543 22 22 22 2234566776666655543
No 189
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=34.97 E-value=1.1e+02 Score=32.95 Aligned_cols=130 Identities=13% Similarity=0.103 Sum_probs=78.5
Q ss_pred hHHHHHHHHHhcCCCCeEEeeccc---ccccc-chhcccc-----------ccccCCCCCCeEEEEeeehhhhhcC-CCC
Q 010734 215 SIVADKIALKLVGPGGFVVTEAGF---GADIG-AEKFMNI-----------KCRYSGLTPQCAVIVATIRALKMHG-GGP 278 (502)
Q Consensus 215 SviAtk~alkla~~~dyvVTEAGF---gaDlG-aEKF~dI-----------kcr~~gl~P~a~VlVaTvRALK~HG-G~~ 278 (502)
+|++.=-.|.-.|-..+++|-.=| |.|++ .++|.++ .-|.+-..|+.+- =-.++.|+-++ +++
T Consensus 157 ~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~i~-~ell~~l~~~~~~~~ 235 (418)
T PRK14336 157 EIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHDIPGLLRIRFLTSHPKDIS-QKLIDAMAHLPKVCR 235 (418)
T ss_pred HHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHhcCCccEEEEeccChhhcC-HHHHHHHHhcCccCC
Confidence 344443333333333456665443 44653 2345542 2344444554321 11244555443 455
Q ss_pred CccCCCCCchhcccccHHHHHHH--HhhHHHHHHHHhhc--CCcEEE-EecCCCCCCHHHHHHHHHHHHHcCCCe
Q 010734 279 QVVAGKPLDHAYLNENVALVEAG--CVNLARHIANTKAY--GANVVV-AVNMFATDSKAELNAVRNAAMAAGAFD 348 (502)
Q Consensus 279 ~~~~~~pl~~~l~~eNl~AL~~G--~~NL~kHIeNi~~f--GvPvVV-AINrF~tDT~~Ei~~v~~~c~~~Gv~~ 348 (502)
...+| .+..+.+-|.++.+| ...+.+-|+.+++. |+.+.. .|--||.+|+++.+...+++++.+...
T Consensus 236 ~l~lg---lQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~pgi~i~~d~IvGfPGET~edf~~tl~fi~~~~~~~ 307 (418)
T PRK14336 236 SLSLP---VQAGDDTILAAMRRGYTNQQYRELVERLKTAMPDISLQTDLIVGFPSETEEQFNQSYKLMADIGYDA 307 (418)
T ss_pred ceecC---CCcCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCCE
Confidence 55555 255667778888888 55677778888887 775432 466799999999999999999988753
No 190
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=34.96 E-value=1.6e+02 Score=27.30 Aligned_cols=59 Identities=20% Similarity=0.173 Sum_probs=36.7
Q ss_pred HHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 010734 307 RHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 371 (502)
Q Consensus 307 kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~ 371 (502)
+.++.+..++.|+|+++|+-....+.++. ++....+.. +. ..=++-|+|-.++-+.+.+
T Consensus 144 ~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~~~~~~-~~--~~Sa~~~~gi~~l~~~L~~ 202 (204)
T cd01878 144 KVLKELGAEDIPMILVLNKIDLLDDEELE---ERLEAGRPD-AV--FISAKTGEGLDELLEAIEE 202 (204)
T ss_pred HHHHHcCcCCCCEEEEEEccccCChHHHH---HHhhcCCCc-eE--EEEcCCCCCHHHHHHHHHh
Confidence 34444555689999999998876666654 444444443 32 3334667787777666544
No 191
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=34.86 E-value=1.2e+02 Score=28.31 Aligned_cols=56 Identities=11% Similarity=-0.025 Sum_probs=36.0
Q ss_pred CCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 316 GANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 316 GvPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
.+|++|++|+..--... ..+...+++++.+.. +. +.=++=|+|-.+|=+.+++.+-
T Consensus 110 ~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~-~~--e~Sa~~~~gi~~lf~~l~~~~~ 167 (199)
T cd04110 110 DVCKVLVGNKNDDPERKVVETEDAYKFAGQMGIS-LF--ETSAKENINVEEMFNCITELVL 167 (199)
T ss_pred CCCEEEEEECcccccccccCHHHHHHHHHHcCCE-EE--EEECCCCcCHHHHHHHHHHHHH
Confidence 58999999997542221 224556777777864 33 3445667888887777666543
No 192
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=34.67 E-value=89 Score=32.64 Aligned_cols=79 Identities=11% Similarity=0.135 Sum_probs=57.4
Q ss_pred eehhhhhcCCCCCccCCCCCchhcccccHHHHHH--HHhhHHHHHHHHhhcCCc-E-EEEecCCCCCCHHHHHHHHHHHH
Q 010734 267 TIRALKMHGGGPQVVAGKPLDHAYLNENVALVEA--GCVNLARHIANTKAYGAN-V-VVAVNMFATDSKAELNAVRNAAM 342 (502)
Q Consensus 267 TvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~--G~~NL~kHIeNi~~fGvP-v-VVAINrF~tDT~~Ei~~v~~~c~ 342 (502)
.+++||-. |+....+|- +....+-+.++.+ ..+...+-|+.+++.|++ + +-.|=-+|.+|.+++....+++.
T Consensus 101 ~l~~l~~~-G~~rvsiGv---qS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt~e~~~~~l~~~~ 176 (374)
T PRK05799 101 KLKILKSM-GVNRLSIGL---QAWQNSLLKYLGRIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQTLEDWKETLEKVV 176 (374)
T ss_pred HHHHHHHc-CCCEEEEEC---ccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHH
Confidence 46777776 466666662 5555666666655 356677788999999987 4 34455689999999999999999
Q ss_pred HcCCCeE
Q 010734 343 AAGAFDA 349 (502)
Q Consensus 343 ~~Gv~~~ 349 (502)
+.++..+
T Consensus 177 ~l~~~~i 183 (374)
T PRK05799 177 ELNPEHI 183 (374)
T ss_pred hcCCCEE
Confidence 9998533
No 193
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=34.64 E-value=77 Score=34.78 Aligned_cols=80 Identities=9% Similarity=0.057 Sum_probs=59.5
Q ss_pred ehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHh--hHHHHHHHHhhcCCcEEEE-ecCCCCCCHHHHHHHHHHHHHc
Q 010734 268 IRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCV--NLARHIANTKAYGANVVVA-VNMFATDSKAELNAVRNAAMAA 344 (502)
Q Consensus 268 vRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~--NL~kHIeNi~~fGvPvVVA-INrF~tDT~~Ei~~v~~~c~~~ 344 (502)
++.++-. |+....+| .+..+++.++.+.||.. ...+-|+.+++.|+.+.+- |=-||.+|.++++...+++.+.
T Consensus 290 l~~l~~a-G~~~v~iG---iES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l 365 (497)
T TIGR02026 290 LHLYRRA-GLVHISLG---TEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDW 365 (497)
T ss_pred HHHHHHh-CCcEEEEc---cccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHc
Confidence 4555544 56666666 36777888999988863 3446778888999987664 3358999999999999999999
Q ss_pred CCCeEEE
Q 010734 345 GAFDAVV 351 (502)
Q Consensus 345 Gv~~~~v 351 (502)
+...+.+
T Consensus 366 ~~~~~~~ 372 (497)
T TIGR02026 366 DPDQANW 372 (497)
T ss_pred CCCceEE
Confidence 9854433
No 194
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=34.55 E-value=99 Score=32.87 Aligned_cols=77 Identities=5% Similarity=0.021 Sum_probs=55.4
Q ss_pred ehhhhhcCC-CCCccCCCCCchhcccccHHHHHHHH--hhHHHHHHHHhh--cCCcEEE-EecCCCCCCHHHHHHHHHHH
Q 010734 268 IRALKMHGG-GPQVVAGKPLDHAYLNENVALVEAGC--VNLARHIANTKA--YGANVVV-AVNMFATDSKAELNAVRNAA 341 (502)
Q Consensus 268 vRALK~HGG-~~~~~~~~pl~~~l~~eNl~AL~~G~--~NL~kHIeNi~~--fGvPvVV-AINrF~tDT~~Ei~~v~~~c 341 (502)
+++++-+|+ +....+| .+..+++-++++.++. ....+-|+.+++ .|+.+.. .|-=||.+|+++++...+++
T Consensus 238 l~~m~~~~~~~~~l~lg---lESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi~i~~~~IvG~PgET~ed~~~tl~~i 314 (414)
T TIGR01579 238 LEAIASEKRLCPHLHLS---LQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVRPDYAFGTDIIVGFPGESEEDFQETLRMV 314 (414)
T ss_pred HHHHHhcCccCCCeEEC---CCcCChHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeeeeeEEEECCCCCHHHHHHHHHHH
Confidence 456665553 4555555 2556667777887764 456677778887 6776544 46679999999999999999
Q ss_pred HHcCCC
Q 010734 342 MAAGAF 347 (502)
Q Consensus 342 ~~~Gv~ 347 (502)
++.+..
T Consensus 315 ~~~~~~ 320 (414)
T TIGR01579 315 KEIEFS 320 (414)
T ss_pred HhCCCC
Confidence 999875
No 195
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=34.53 E-value=2e+02 Score=27.56 Aligned_cols=95 Identities=17% Similarity=0.238 Sum_probs=53.5
Q ss_pred HhhcCC-cEEEEecC---------CCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHH--HHHHHHHhhcCCCC
Q 010734 312 TKAYGA-NVVVAVNM---------FATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDL--GIAVQRACENVTQP 379 (502)
Q Consensus 312 i~~fGv-PvVVAINr---------F~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eL--A~~Vv~a~e~~~~~ 379 (502)
.+.||- +++++|+. +...++.+...+.+..++.|+..+.+.+...+|-..+.++ -+++.+.+ +
T Consensus 116 ~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~-----~ 190 (234)
T cd04732 116 LKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAAT-----G 190 (234)
T ss_pred HHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHhc-----C
Confidence 335775 88888872 1122333333445555678998777777888776655543 33333322 2
Q ss_pred ccccCCCCCCHHHHHHHHHHHhCCCceeeCHHH
Q 010734 380 LKFLYPLDVSIKEKIDTIARSYGASGVEYSEEA 412 (502)
Q Consensus 380 fk~LY~~~~sI~eKIe~IA~IYGA~~V~fS~~A 412 (502)
...+|.-.-.-.+.++++.+ +|+++|......
T Consensus 191 ipvi~~GGi~~~~di~~~~~-~Ga~gv~vg~~~ 222 (234)
T cd04732 191 IPVIASGGVSSLDDIKALKE-LGVAGVIVGKAL 222 (234)
T ss_pred CCEEEecCCCCHHHHHHHHH-CCCCEEEEeHHH
Confidence 34455444433444666554 588888765544
No 196
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=34.51 E-value=1.3e+02 Score=27.31 Aligned_cols=59 Identities=17% Similarity=0.138 Sum_probs=37.3
Q ss_pred HhhcCCcEEEEecCCCCCCHHHHHHHH----HHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 312 TKAYGANVVVAVNMFATDSKAELNAVR----NAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 312 i~~fGvPvVVAINrF~tDT~~Ei~~v~----~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
++.+++|+++++|+....+..|.+.+. +........ +. ..=+.-|+|..+|-+.+.+.+
T Consensus 131 l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~-~~--~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 131 LKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDE-VI--LFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred HHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCc-eE--EEEcCCCCCHHHHHHHHHHHh
Confidence 356899999999998877766665433 333332333 22 233566788877777666554
No 197
>PLN02540 methylenetetrahydrofolate reductase
Probab=34.44 E-value=7.6e+02 Score=28.45 Aligned_cols=158 Identities=13% Similarity=0.187 Sum_probs=88.4
Q ss_pred cccchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhh-cCCcE
Q 010734 241 DIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKA-YGANV 319 (502)
Q Consensus 241 DlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~-fGvPv 319 (502)
+.|.+++++=-=|...+.|+-+=| | |+.|... .+..++. ...+++ +|+++
T Consensus 11 ~~g~~nL~~~~~rl~~~~P~FisV--T-----~gAgGst-----------~~~Tl~l-----------a~~lq~~~Gie~ 61 (565)
T PLN02540 11 EEGVDNLFERMDRMVAHGPLFCDI--T-----WGAGGST-----------ADLTLDI-----------ANRMQNMICVET 61 (565)
T ss_pred chHHHHHHHHHHHHhccCCCEEEe--C-----CCCCCCc-----------HHHHHHH-----------HHHHHHhcCCCe
Confidence 456777777667888899998753 3 6644421 0112222 233444 69998
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHcCCCeE-EEcCccccCcc------chhHHHHHHHHHhhcCCC-Ccc---ccCCCC-
Q 010734 320 VVAVNMFATDSKAELNAVRNAAMAAGAFDA-VVCSHHAHGGK------GAVDLGIAVQRACENVTQ-PLK---FLYPLD- 387 (502)
Q Consensus 320 VVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~-~vs~~wakGGe------Ga~eLA~~Vv~a~e~~~~-~fk---~LY~~~- 387 (502)
|.=+=--..+ .++|+...+.+.++|++.+ ++.---.++|+ |.-+-|...++.+.+.-. .|. --|+..
T Consensus 62 i~HLTCrd~n-~~~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgH 140 (565)
T PLN02540 62 MMHLTCTNMP-VEKIDHALETIKSNGIQNILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAH 140 (565)
T ss_pred eEEeeecCCC-HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCC
Confidence 8755444333 6789999899999999865 33322333332 433334444554443111 111 122221
Q ss_pred ------------CCHHHHHHHHHH-H-hCCCcee----eCHHH-HHHHHHHHHCCCCCCCe
Q 010734 388 ------------VSIKEKIDTIAR-S-YGASGVE----YSEEA-EKQIEMYTGQGFSGLPI 429 (502)
Q Consensus 388 ------------~sI~eKIe~IA~-I-YGA~~V~----fS~~A-~kqLk~ie~~Gf~~LPV 429 (502)
.+.++=++.+.+ + -||+-+. |+.++ .+=++++.+.|. +.||
T Consensus 141 pe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlfFD~d~f~~f~~~~r~~Gi-~vPI 200 (565)
T PLN02540 141 PDVIGGDGLATPEAYQKDLAYLKEKVDAGADLIITQLFYDTDIFLKFVNDCRQIGI-TCPI 200 (565)
T ss_pred CcccccccccCCCChHHHHHHHHHHHHcCCCEEeeccccCHHHHHHHHHHHHhcCC-CCCE
Confidence 233344566655 3 7888554 88777 556677778875 4565
No 198
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=34.27 E-value=84 Score=32.53 Aligned_cols=49 Identities=8% Similarity=-0.003 Sum_probs=33.9
Q ss_pred HhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEE
Q 010734 302 CVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVV 351 (502)
Q Consensus 302 ~~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~v 351 (502)
+....+.|+.++++|+++.|..+.- .++.+|++.+.+++++.|+..+..
T Consensus 143 f~~v~~~i~~l~~~~~~~~i~~~v~-~~n~~~l~~i~~~~~~~g~~~~~~ 191 (370)
T PRK13758 143 FSKVERAAELFKKYKVEFNILCVVT-SNTARHVNKIYKYFKEKDFKFLQF 191 (370)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEec-cccccCHHHHHHHHHHcCCCeEee
Confidence 4455555666666777777665443 356789999999999999964433
No 199
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=34.27 E-value=1.3e+02 Score=30.42 Aligned_cols=54 Identities=13% Similarity=-0.017 Sum_probs=43.1
Q ss_pred HhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCcc
Q 010734 302 CVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHH 355 (502)
Q Consensus 302 ~~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~w 355 (502)
+.++.++|+.+|+.|..|.+.+=.-..-+++++..+.+.+.+.|+..+.+++..
T Consensus 108 ~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT~ 161 (266)
T cd07944 108 FDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDSF 161 (266)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 678899999999999988776654334567888888888888999888888764
No 200
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=34.20 E-value=1.3e+02 Score=30.90 Aligned_cols=50 Identities=14% Similarity=0.076 Sum_probs=33.8
Q ss_pred hhHHHHHHHHhhcCCc-EEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcC
Q 010734 303 VNLARHIANTKAYGAN-VVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCS 353 (502)
Q Consensus 303 ~NL~kHIeNi~~fGvP-vVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~ 353 (502)
....+.|+.+++.|++ +.+-+-..+..+++|+..+.+++++.|+. +...+
T Consensus 139 ~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~gv~-~~~ie 189 (334)
T TIGR02666 139 EQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKERGVT-LRFIE 189 (334)
T ss_pred HHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCCe-EEEEe
Confidence 4444555666677886 54433334556889999999999999984 55443
No 201
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=34.16 E-value=2e+02 Score=29.45 Aligned_cols=71 Identities=18% Similarity=0.181 Sum_probs=45.7
Q ss_pred cHHHHHHH-HhhHHHHHHHHhh-cCCc-EEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhH
Q 010734 294 NVALVEAG-CVNLARHIANTKA-YGAN-VVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVD 364 (502)
Q Consensus 294 Nl~AL~~G-~~NL~kHIeNi~~-fGvP-vVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~e 364 (502)
|+.+|+.| +.=+.+-|.-+++ -+=+ +|=+|=-..-=|++|+....+.|.+.|+..+-.|+.|..||.=-.+
T Consensus 99 nig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTSTGf~~~gAT~ed 172 (228)
T COG0274 99 NIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEEKRKACEIAIEAGADFVKTSTGFSAGGATVED 172 (228)
T ss_pred eHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHH
Confidence 33344433 2333444555544 3322 4444555666788999999999999999877788999977765544
No 202
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=33.93 E-value=1.9e+02 Score=26.66 Aligned_cols=56 Identities=23% Similarity=0.210 Sum_probs=36.9
Q ss_pred CCcEEEEecCCCCCC---H---------HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 316 GANVVVAVNMFATDS---K---------AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 316 GvPvVVAINrF~tDT---~---------~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
.+|+|++.|+..... . ...+...+++++.|...+..+. ++-|+|-.+|-+.+++.+
T Consensus 105 ~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~S--a~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 105 NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECS--ALTGEGVDDVFEAATRAA 172 (187)
T ss_pred CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEcc--CCCCCCHHHHHHHHHHHH
Confidence 699999999965311 0 0124456777888863344333 788899988877777554
No 203
>PLN03110 Rab GTPase; Provisional
Probab=33.77 E-value=1.4e+02 Score=28.64 Aligned_cols=56 Identities=9% Similarity=-0.102 Sum_probs=33.8
Q ss_pred cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 315 YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
.++|+|++.|+-.-+... +.+..+.++...+.. +.. .=++=|+|-.++-+.+++.+
T Consensus 116 ~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~-~~e--~SA~~g~~v~~lf~~l~~~i 173 (216)
T PLN03110 116 SNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLS-FLE--TSALEATNVEKAFQTILLEI 173 (216)
T ss_pred CCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCE-EEE--EeCCCCCCHHHHHHHHHHHH
Confidence 589999999986432211 123345566666664 333 33666777777666665554
No 204
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=33.71 E-value=1.7e+02 Score=25.68 Aligned_cols=65 Identities=15% Similarity=0.076 Sum_probs=36.8
Q ss_pred hHHHHHHHHhh-cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 010734 304 NLARHIANTKA-YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 371 (502)
Q Consensus 304 NL~kHIeNi~~-fGvPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~ 371 (502)
++.+.+.+... .++|+|++.|+.....+. +.+...++++..++. +..+.. +=|.|-.++-+.+++
T Consensus 93 ~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa--~~~~~v~~l~~~l~~ 160 (163)
T cd04176 93 PMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCP-FMETSA--KSKTMVNELFAEIVR 160 (163)
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCE-EEEecC--CCCCCHHHHHHHHHH
Confidence 33344444432 689999999997653222 233456667777773 443333 344666666555543
No 205
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=33.68 E-value=1.4e+02 Score=31.81 Aligned_cols=68 Identities=15% Similarity=0.138 Sum_probs=42.2
Q ss_pred hHHHHHHHHhhcCCc-EEEEecCCCCCCHHHH----HHHHHHHHHc---CCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 304 NLARHIANTKAYGAN-VVVAVNMFATDSKAEL----NAVRNAAMAA---GAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 304 NL~kHIeNi~~fGvP-vVVAINrF~tDT~~Ei----~~v~~~c~~~---Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
....|+..++.+|++ +||++|+-.--++++. +.+.++.+.. ++. +. ..=+.=|+|-.+|-+.+...+.
T Consensus 121 qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~-ii--~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 121 QTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYEEIKEFVKGTVAENAP-II--PVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred chHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHHHHHHHhhhhhcccCCCe-EE--EEECCCCCChHHHHHHHHHhCC
Confidence 456678888888875 8999999766555443 3444444432 332 32 2334457888888877776543
No 206
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=33.62 E-value=4.9e+02 Score=25.86 Aligned_cols=119 Identities=13% Similarity=0.090 Sum_probs=71.7
Q ss_pred HHHhhcCCcEEEEe----------c--CCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCC
Q 010734 310 ANTKAYGANVVVAV----------N--MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVT 377 (502)
Q Consensus 310 eNi~~fGvPvVVAI----------N--rF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~ 377 (502)
+.+++.++|+|..- | ++..+...+...+.++..+.|..++++. +.+...-+.++++.+.+++++..
T Consensus 84 ~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~i--~~~~~~~g~~~~~~~~~~~~~~G 161 (341)
T cd06341 84 PYLAGAGIPVIGGAGTSAWELTSPNSFPFSGGTPASLTTWGDFAKDQGGTRAVAL--VTALSAAVSAAAALLARSLAAAG 161 (341)
T ss_pred HHHhhcCCceecCCCCCchhhcCCCeEEecCCCcchhHHHHHHHHHcCCcEEEEE--EeCCcHHHHHHHHHHHHHHHHcC
Confidence 45667788877432 1 2455777788899999998887666643 12222234566666777776422
Q ss_pred CC--ccccCCCC-CCHHHHHHHHHHHhCCCceeeC---HHHHHHHHHHHHCCCCCCCeeEe
Q 010734 378 QP--LKFLYPLD-VSIKEKIDTIARSYGASGVEYS---EEAEKQIEMYTGQGFSGLPICMA 432 (502)
Q Consensus 378 ~~--fk~LY~~~-~sI~eKIe~IA~IYGA~~V~fS---~~A~kqLk~ie~~Gf~~LPVCmA 432 (502)
-. ....|+.+ .+...-+.+|.. -+.+-|.+. +.+..=++++.++|+. .|+++.
T Consensus 162 ~~v~~~~~~~~~~~d~~~~~~~i~~-~~pdaV~~~~~~~~a~~~~~~~~~~G~~-~~~~~~ 220 (341)
T cd06341 162 VSVAGIVVITATAPDPTPQAQQAAA-AGADAIITVLDAAVCASVLKAVRAAGLT-PKVVLS 220 (341)
T ss_pred CccccccccCCCCCCHHHHHHHHHh-cCCCEEEEecChHHHHHHHHHHHHcCCC-CCEEEe
Confidence 11 22344433 455555555543 245555433 4788888999999984 577654
No 207
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=33.36 E-value=1.5e+02 Score=31.32 Aligned_cols=52 Identities=17% Similarity=0.110 Sum_probs=43.2
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCcc
Q 010734 304 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHH 355 (502)
Q Consensus 304 NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~w 355 (502)
++.+||+.+|+.|..+++.+=.-..-|++++..+.+.+.+.|+..+.+++..
T Consensus 116 ~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~ 167 (337)
T PRK08195 116 VSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDSA 167 (337)
T ss_pred HHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCCC
Confidence 6899999999999988886654455578999888888999999877777764
No 208
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=33.32 E-value=1.7e+02 Score=27.03 Aligned_cols=59 Identities=14% Similarity=0.196 Sum_probs=35.2
Q ss_pred HhhcCCcEEEEecCCCCCCHHHHH----HHHHHHHH-------cCCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 312 TKAYGANVVVAVNMFATDSKAELN----AVRNAAMA-------AGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 312 i~~fGvPvVVAINrF~tDT~~Ei~----~v~~~c~~-------~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
.+.++.|++|++|+-.--+.++.+ .+++...+ .++. +. ..=++=|+|-.+|-+.+.+.+
T Consensus 116 ~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-vi--~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 116 GEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSP-II--PVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred HHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCC-EE--EEeccCCCCHHHHHHHHHhcc
Confidence 344689999999997654444433 33332211 2343 32 333466788888888877665
No 209
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=33.32 E-value=3.9e+02 Score=25.96 Aligned_cols=94 Identities=24% Similarity=0.198 Sum_probs=52.3
Q ss_pred EEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHh-------------hHHHHHHHHhhcCCcEEEEecCCC-
Q 010734 262 AVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCV-------------NLARHIANTKAYGANVVVAVNMFA- 327 (502)
Q Consensus 262 ~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~-------------NL~kHIeNi~~fGvPvVVAINrF~- 327 (502)
.-++.|+|. +..||..... .++=++.++.++. ++.+.++..++.|..+|+.-=.|.
T Consensus 56 ~piI~T~R~-~~eGG~~~~~---------~~~~~~ll~~~~~~~~d~vDiEl~~~~~~~~~~~~~~~~~kiI~S~H~f~~ 125 (225)
T cd00502 56 LPIIFTVRT-KSEGGNFEGS---------EEEYLELLEEALKLGPDYVDIELDSALLEELINSRKKGNTKIIGSYHDFSG 125 (225)
T ss_pred CCEEEEEcc-cccCCCcCCC---------HHHHHHHHHHHHHHCCCEEEEEecchHHHHHHHHHHhCCCEEEEEeccCCC
Confidence 456779994 5667754211 1222445555543 367777777777777777665554
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHH
Q 010734 328 TDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLG 366 (502)
Q Consensus 328 tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA 366 (502)
+.+.+|+..+.+.+.+.|+. ++=--..+..-+-...|-
T Consensus 126 tp~~~~l~~~~~~~~~~gad-ivKla~~~~~~~D~~~ll 163 (225)
T cd00502 126 TPSDEELVSRLEKMAALGAD-IVKIAVMANSIEDNLRLL 163 (225)
T ss_pred CcCHHHHHHHHHHHHHhCCC-EEEEEecCCCHHHHHHHH
Confidence 33556676666667767663 333333444444444443
No 210
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=33.04 E-value=1.3e+02 Score=26.33 Aligned_cols=15 Identities=13% Similarity=0.129 Sum_probs=12.3
Q ss_pred hcCCcEEEEecCCCC
Q 010734 314 AYGANVVVAVNMFAT 328 (502)
Q Consensus 314 ~fGvPvVVAINrF~t 328 (502)
..++|++|++|+-..
T Consensus 105 ~~~~p~ilv~NK~D~ 119 (167)
T cd04160 105 LEGVPLLILANKQDL 119 (167)
T ss_pred hcCCCEEEEEEcccc
Confidence 358999999998753
No 211
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=32.93 E-value=1.2e+02 Score=32.82 Aligned_cols=81 Identities=10% Similarity=0.059 Sum_probs=58.6
Q ss_pred eehhhhhcCCCCCccCCCCCchhcccccHHHHHHH--HhhHHHHHHHHhhcCC-cEEE-EecCCCCCCHHHHHHHHHHHH
Q 010734 267 TIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAG--CVNLARHIANTKAYGA-NVVV-AVNMFATDSKAELNAVRNAAM 342 (502)
Q Consensus 267 TvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G--~~NL~kHIeNi~~fGv-PvVV-AINrF~tDT~~Ei~~v~~~c~ 342 (502)
.+++||-. |+....+| .+...++-++++.++ .....+-++.++++|+ ++.+ .|--+|.+|.++++...+++.
T Consensus 153 ~l~~l~~a-G~~risiG---vqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~~l~~~~ 228 (453)
T PRK09249 153 MLDALREL-GFNRLSLG---VQDFDPEVQKAVNRIQPFEFTFALVEAARELGFTSINIDLIYGLPKQTPESFARTLEKVL 228 (453)
T ss_pred HHHHHHHc-CCCEEEEC---CCCCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCHHHHHHHHHHHH
Confidence 45677666 46666666 255556667777665 3466678899999998 4444 455799999999999999999
Q ss_pred HcCCCeEEE
Q 010734 343 AAGAFDAVV 351 (502)
Q Consensus 343 ~~Gv~~~~v 351 (502)
+.|+..+.+
T Consensus 229 ~l~~~~i~~ 237 (453)
T PRK09249 229 ELRPDRLAV 237 (453)
T ss_pred hcCCCEEEE
Confidence 999864433
No 212
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=32.81 E-value=1.9e+02 Score=28.83 Aligned_cols=106 Identities=18% Similarity=0.083 Sum_probs=65.9
Q ss_pred HHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCC
Q 010734 299 EAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQ 378 (502)
Q Consensus 299 ~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~ 378 (502)
+..+.++...++.+++.|..|.+.+-....-+++++..+.+.+.+.|+..+.+++... ..--.+.++-|-.+.+.-+-
T Consensus 106 ~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G--~~~P~~v~~lv~~l~~~~~~ 183 (259)
T cd07939 106 AWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFADTVG--ILDPFTTYELIRRLRAATDL 183 (259)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCC--CCCHHHHHHHHHHHHHhcCC
Confidence 4567788899999999999877666544445578888888888889998888888653 22223333333333222122
Q ss_pred C--ccccCCCCCCHHHHHHHHHH-HhCCCceeeC
Q 010734 379 P--LKFLYPLDVSIKEKIDTIAR-SYGASGVEYS 409 (502)
Q Consensus 379 ~--fk~LY~~~~sI~eKIe~IA~-IYGA~~V~fS 409 (502)
. |+.=-+..+.+ -+.++- -.|++-|+-|
T Consensus 184 ~l~~H~Hn~~Gla~---An~laAi~aG~~~vd~s 214 (259)
T cd07939 184 PLEFHAHNDLGLAT---ANTLAAVRAGATHVSVT 214 (259)
T ss_pred eEEEEecCCCChHH---HHHHHHHHhCCCEEEEe
Confidence 2 33333333444 566666 7888877643
No 213
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=32.75 E-value=3.9e+02 Score=24.45 Aligned_cols=115 Identities=10% Similarity=0.057 Sum_probs=62.3
Q ss_pred HHHHhhcCCcEEEEecC---------CCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCC-C
Q 010734 309 IANTKAYGANVVVAVNM---------FATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVT-Q 378 (502)
Q Consensus 309 IeNi~~fGvPvVVAINr---------F~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~-~ 378 (502)
++.+++.|+|+|..-+. +..|..+....+.+++.+.|.+++++-.. ........+..+.+.+.+++.. -
T Consensus 72 ~~~l~~~~ip~v~~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~~~i~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~ 150 (264)
T cd01537 72 VKLARKAGIPVVLVDRDIPDGDRVPSVGSDNEQAGYLAGEHLAEKGHRRIALLAG-PLGSSTARERVAGFKDALKEAGPI 150 (264)
T ss_pred HHHhhhcCCCEEEeccCCCCCcccceEecCcHHHHHHHHHHHHHhcCCcEEEEEC-CCCCCcHHHHHHHHHHHHHHcCCc
Confidence 56667788998876433 34477888888888988888776665321 1112344455556665554322 1
Q ss_pred CccccCCCCCCHHHHHHHHHH-HhC---CCceeeC--HHHHHHHHHHHHCCC
Q 010734 379 PLKFLYPLDVSIKEKIDTIAR-SYG---ASGVEYS--EEAEKQIEMYTGQGF 424 (502)
Q Consensus 379 ~fk~LY~~~~sI~eKIe~IA~-IYG---A~~V~fS--~~A~kqLk~ie~~Gf 424 (502)
.....+.-+.+.++=.+.+.+ +-. .+.|..+ ..|..-++.++++|.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~g~ 202 (264)
T cd01537 151 EIVLVQEGDWDAEKGYQAAEELLTAHPDPTAIFAANDDMALGALRALREAGL 202 (264)
T ss_pred ChhhhccCCCCHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHhCC
Confidence 122222222233322233333 222 2333322 456667788888887
No 214
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=32.43 E-value=1.5e+02 Score=29.73 Aligned_cols=46 Identities=20% Similarity=0.261 Sum_probs=31.6
Q ss_pred HHHHHHHHhhcCCcEEEEe---cCCCCCCHHHHHHHHHHHHHcC--CCeEEE
Q 010734 305 LARHIANTKAYGANVVVAV---NMFATDSKAELNAVRNAAMAAG--AFDAVV 351 (502)
Q Consensus 305 L~kHIeNi~~fGvPvVVAI---NrF~tDT~~Ei~~v~~~c~~~G--v~~~~v 351 (502)
..+.|+.+.+.|.++.|.. ..| .|+.+|++.+.+++++.| +..+.+
T Consensus 203 vl~~i~~l~~~~~~~~i~~~~v~~~-n~~~~ei~~l~~~~~~~~~~v~~v~l 253 (295)
T TIGR02494 203 ILENLEALAAAGKNVVIRIPVIPGF-NDSEENIEAIAAFLRKLEPGVDEIDL 253 (295)
T ss_pred HHHHHHHHHhCCCcEEEEeceeCCc-CCCHHHHHHHHHHHHHhccCCceEEe
Confidence 4445555666777776543 223 588999999999999998 544444
No 215
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=32.42 E-value=2.1e+02 Score=31.19 Aligned_cols=43 Identities=14% Similarity=0.144 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHcCCCeE-EEcCccccCccchhHHHHHHHHHhhc
Q 010734 333 ELNAVRNAAMAAGAFDA-VVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 333 Ei~~v~~~c~~~Gv~~~-~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
....+.+.|.+.|++.+ .++..|++-|+.+.+|-+++++.+.+
T Consensus 76 ~~~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~ 119 (447)
T TIGR02717 76 YVPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARK 119 (447)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHH
Confidence 34556677888999755 45789998886666777888888764
No 216
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=32.41 E-value=1.3e+02 Score=28.65 Aligned_cols=67 Identities=22% Similarity=0.293 Sum_probs=38.2
Q ss_pred CCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHH
Q 010734 255 SGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAEL 334 (502)
Q Consensus 255 ~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei 334 (502)
-|+.|-..+=|| +|-++|-+-. -.+.-|+ ....=|+-+.++|.|+|||--.-+. +
T Consensus 35 VGiDPG~ttgiA---ildL~G~~l~---------l~S~R~~--------~~~evi~~I~~~G~PviVAtDV~p~--P--- 89 (138)
T PF04312_consen 35 VGIDPGTTTGIA---ILDLDGELLD---------LKSSRNM--------SRSEVIEWISEYGKPVIVATDVSPP--P--- 89 (138)
T ss_pred EEECCCceeEEE---EEecCCcEEE---------EEeecCC--------CHHHHHHHHHHcCCEEEEEecCCCC--c---
Confidence 366666666555 4556765421 1122221 2344589999999999998655443 2
Q ss_pred HHHHHHHHHcCC
Q 010734 335 NAVRNAAMAAGA 346 (502)
Q Consensus 335 ~~v~~~c~~~Gv 346 (502)
+.|++.+...|+
T Consensus 90 ~~V~Kia~~f~A 101 (138)
T PF04312_consen 90 ETVKKIARSFNA 101 (138)
T ss_pred HHHHHHHHHhCC
Confidence 345555554444
No 217
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=32.28 E-value=2e+02 Score=29.19 Aligned_cols=94 Identities=14% Similarity=0.185 Sum_probs=61.1
Q ss_pred HHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCc-ccc-Cccc--hhHHHHHHHHHhhcCCCCcccc
Q 010734 308 HIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSH-HAH-GGKG--AVDLGIAVQRACENVTQPLKFL 383 (502)
Q Consensus 308 HIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~-wak-GGeG--a~eLA~~Vv~a~e~~~~~fk~L 383 (502)
+++-+.+.|.||++-=..|. |.+|+....+.+++.|..++++|+. ..- .+-. -.+|. ++....+ ...+-..
T Consensus 124 LL~~~a~~gkPVilk~G~~~--t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~--~i~~lk~-~~~~pV~ 198 (260)
T TIGR01361 124 LLKEVGKQGKPVLLKRGMGN--TIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLS--AVPVLKK-ETHLPII 198 (260)
T ss_pred HHHHHhcCCCcEEEeCCCCC--CHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHH--HHHHHHH-hhCCCEE
Confidence 67777889999999877663 5899999999999999988999874 421 1222 23443 3333332 1246677
Q ss_pred CCCCCCHH--HHHHHHH--H-HhCCCce
Q 010734 384 YPLDVSIK--EKIDTIA--R-SYGASGV 406 (502)
Q Consensus 384 Y~~~~sI~--eKIe~IA--~-IYGA~~V 406 (502)
|+.+.+.- +=+..+| - .+||+++
T Consensus 199 ~ds~Hs~G~r~~~~~~~~aAva~Ga~gl 226 (260)
T TIGR01361 199 VDPSHAAGRRDLVIPLAKAAIAAGADGL 226 (260)
T ss_pred EcCCCCCCccchHHHHHHHHHHcCCCEE
Confidence 76555433 3344444 3 8899864
No 218
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=32.24 E-value=1e+02 Score=32.27 Aligned_cols=78 Identities=15% Similarity=0.204 Sum_probs=57.0
Q ss_pred eehhhhhcCCCCCccCCCCCchhcccccHHHHHHH--HhhHHHHHHHHhhcCCcEE-E-EecCCCCCCHHHHHHHHHHHH
Q 010734 267 TIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAG--CVNLARHIANTKAYGANVV-V-AVNMFATDSKAELNAVRNAAM 342 (502)
Q Consensus 267 TvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G--~~NL~kHIeNi~~fGvPvV-V-AINrF~tDT~~Ei~~v~~~c~ 342 (502)
.+++||-. |+....+| .+....+-++.+.++ .+...+-|+.++++|++.| + .|=-+|.+|.+++....+++.
T Consensus 102 ~l~~l~~~-G~~rvsiG---vqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt~~~~~~~l~~~~ 177 (377)
T PRK08599 102 KLQVLKDS-GVNRISLG---VQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQTIEDFKESLAKAL 177 (377)
T ss_pred HHHHHHHc-CCCEEEEe---cccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCCCHHHHHHHHHHHH
Confidence 46777766 45555555 255666667777665 4467778889999998843 2 344689999999999999999
Q ss_pred HcCCCe
Q 010734 343 AAGAFD 348 (502)
Q Consensus 343 ~~Gv~~ 348 (502)
+.++..
T Consensus 178 ~l~~~~ 183 (377)
T PRK08599 178 ALDIPH 183 (377)
T ss_pred ccCCCE
Confidence 999863
No 219
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=32.12 E-value=1.2e+02 Score=32.87 Aligned_cols=80 Identities=13% Similarity=0.205 Sum_probs=53.1
Q ss_pred cCCcEEEEecCCCCCCHHH---HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh-cCCCCccccCCCCCCH
Q 010734 315 YGANVVVAVNMFATDSKAE---LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE-NVTQPLKFLYPLDVSI 390 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~E---i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e-~~~~~fk~LY~~~~sI 390 (502)
-.-|+|.+.|.-..|-.+. ++.|+++.++.+..-+.+|-. .|+ ++.++.+ ..+..|--.+.. .
T Consensus 205 t~KP~lyvaN~~e~~~~~~n~~~~~i~~~~~~~~~~vV~~sA~--------~E~--eL~~l~~~~e~~~F~~~~g~--~- 271 (372)
T COG0012 205 TAKPMLYVANVSEDDLANLNEYVKRLKELAAKENAEVVPVSAA--------IEL--ELRELADAEEKGEFLIELGQ--K- 271 (372)
T ss_pred hcCCeEEEEECCcccccchhHHHHHHHHHhhhcCCcEEEeeHH--------HHH--HHHhCccccchhhHHHhcCc--c-
Confidence 4679999999998888665 999999999888864444421 111 2222222 222334444443 3
Q ss_pred HHHHHHHHH-HhCCCcee
Q 010734 391 KEKIDTIAR-SYGASGVE 407 (502)
Q Consensus 391 ~eKIe~IA~-IYGA~~V~ 407 (502)
++.|+.+.+ .||.-++.
T Consensus 272 ~~~l~~~i~~~y~~lgl~ 289 (372)
T COG0012 272 ESGLNELIRAGYGLLGLQ 289 (372)
T ss_pred hhHHHHHHHHHhcccchh
Confidence 789999888 99998873
No 220
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=31.91 E-value=3.9e+02 Score=31.39 Aligned_cols=121 Identities=8% Similarity=0.035 Sum_probs=76.1
Q ss_pred HHHHHHhhHHHHHHHH-hhcC-CcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 297 LVEAGCVNLARHIANT-KAYG-ANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 297 AL~~G~~NL~kHIeNi-~~fG-vPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
.+.++|+.|+.+.+.- ++-| -|-|+..+--+...+.-.+++..+.+..|+. +.....+ .... .+++++.
T Consensus 560 r~~~~fE~LR~~~~~~~~~~g~rpkV~LatlG~d~H~~ra~fv~~~l~~~Gfe-V~~~~~~----~s~e----~~v~aa~ 630 (714)
T PRK09426 560 GDDPEFAAARALVEAFAEAEGRRPRILVAKMGQDGHDRGAKVIATAFADLGFD-VDIGPLF----QTPE----EAARQAV 630 (714)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCcchhHhHHHHHHHHHhCCee-EecCCCC----CCHH----HHHHHHH
Confidence 5788999999999974 4444 5677778887777888999999999988884 5333222 1222 3333333
Q ss_pred cCCCCccccCCCCCCHHHHHHHHHH---HhCCCce-eeCHH--HHHHHHHHHHCCCCC
Q 010734 375 NVTQPLKFLYPLDVSIKEKIDTIAR---SYGASGV-EYSEE--AEKQIEMYTGQGFSG 426 (502)
Q Consensus 375 ~~~~~fk~LY~~~~sI~eKIe~IA~---IYGA~~V-~fS~~--A~kqLk~ie~~Gf~~ 426 (502)
+...++--+-..+..-.+....+++ -.|+++| .+--- ..++.+.+++.|.+.
T Consensus 631 ~~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G~~~v~vl~GG~~~~~~~~~l~~aGvD~ 688 (714)
T PRK09426 631 ENDVHVVGVSSLAAGHKTLVPALIEALKKLGREDIMVVVGGVIPPQDYDFLYEAGVAA 688 (714)
T ss_pred HcCCCEEEEeccchhhHHHHHHHHHHHHhcCCCCcEEEEeCCCChhhHHHHHhCCCCE
Confidence 3334555555566566666666665 5566555 33221 133446788888764
No 221
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=31.87 E-value=1.8e+02 Score=32.63 Aligned_cols=77 Identities=19% Similarity=0.173 Sum_probs=47.4
Q ss_pred HhhHHHHHHHHhh-cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCc
Q 010734 302 CVNLARHIANTKA-YGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPL 380 (502)
Q Consensus 302 ~~NL~kHIeNi~~-fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~f 380 (502)
|.|.-.-++.+.. +++++.+ |.-++++|++...+.+++.|+. +++++. =+.++|++ -.-+.
T Consensus 105 ~~~~~~~~~~~~~ll~~~i~~----~~~~~~~e~~~~~~~l~~~G~~-~viG~~------~~~~~A~~-------~gl~~ 166 (526)
T TIGR02329 105 HQDTPPALRRFQAAFNLDIVQ----RSYVTEEDARSCVNDLRARGIG-AVVGAG------LITDLAEQ-------AGLHG 166 (526)
T ss_pred cCcccHHHHHHHHHhCCceEE----EEecCHHHHHHHHHHHHHCCCC-EEECCh------HHHHHHHH-------cCCce
Confidence 3444444444444 6666444 6678889999999999999995 887654 22333332 12234
Q ss_pred cccCCCCCCHHHHHHHH
Q 010734 381 KFLYPLDVSIKEKIDTI 397 (502)
Q Consensus 381 k~LY~~~~sI~eKIe~I 397 (502)
-++|+. ++|++-++.-
T Consensus 167 ili~s~-esi~~a~~~A 182 (526)
T TIGR02329 167 VFLYSA-DSVRQAFDDA 182 (526)
T ss_pred EEEecH-HHHHHHHHHH
Confidence 567764 7777776663
No 222
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=31.86 E-value=1.9e+02 Score=28.84 Aligned_cols=32 Identities=22% Similarity=0.141 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEcCccccCccc
Q 010734 330 SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKG 361 (502)
Q Consensus 330 T~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeG 361 (502)
|++|+..+.+.|.+.|+..+..|+.|..||.-
T Consensus 134 ~~e~i~~a~~~~~~agadfIKTsTG~~~~gat 165 (221)
T PRK00507 134 TDEEKVKACEIAKEAGADFVKTSTGFSTGGAT 165 (221)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCC
Confidence 57899999999999999888888999888743
No 223
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=31.71 E-value=1.3e+02 Score=24.91 Aligned_cols=61 Identities=18% Similarity=0.169 Sum_probs=35.7
Q ss_pred HHHHHhhcCCcEEEEecCCCCCCHHHHHHHH-----HHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 010734 308 HIANTKAYGANVVVAVNMFATDSKAELNAVR-----NAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 371 (502)
Q Consensus 308 HIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~-----~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~ 371 (502)
.+....+.+.|++|++|+...-++.++.... ......+.. +.... ++=|+|-.+|-+.+.+
T Consensus 96 ~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s--a~~~~~v~~l~~~l~~ 161 (163)
T cd00880 96 LLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLP-VIAVS--ALTGEGIDELREALIE 161 (163)
T ss_pred HHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCc-eEEEe--eeccCCHHHHHHHHHh
Confidence 5666777999999999998766665555442 122222332 22222 2345676666665544
No 224
>PRK12288 GTPase RsgA; Reviewed
Probab=31.61 E-value=1.4e+02 Score=31.65 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=37.3
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCCCHHH---HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHH
Q 010734 304 NLARHIANTKAYGANVVVAVNMFATDSKAE---LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAV 369 (502)
Q Consensus 304 NL~kHIeNi~~fGvPvVVAINrF~tDT~~E---i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~V 369 (502)
.|.+-+..+...|+|+|+++|+-.-.+++| ++...+..++.|.. +.. .=+.=|+|-.+|.+.+
T Consensus 138 ~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~-v~~--vSA~tg~GideL~~~L 203 (347)
T PRK12288 138 IIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYR-VLM--VSSHTGEGLEELEAAL 203 (347)
T ss_pred HHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCe-EEE--EeCCCCcCHHHHHHHH
Confidence 444445555678999999999977655443 33444444567874 322 2244556665555443
No 225
>PLN02540 methylenetetrahydrofolate reductase
Probab=31.60 E-value=94 Score=35.44 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=68.6
Q ss_pred HHHHHHhcCCCCeEEeeccccccccchhccccccccCCCCCCeE---EEEeeehhhhhcCCCCCccCCCCCchhccc---
Q 010734 219 DKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCA---VIVATIRALKMHGGGPQVVAGKPLDHAYLN--- 292 (502)
Q Consensus 219 tk~alkla~~~dyvVTEAGFgaDlGaEKF~dIkcr~~gl~P~a~---VlVaTvRALK~HGG~~~~~~~~pl~~~l~~--- 292 (502)
.++--|..--.||+||-.-|.+|. .++|++ +||..|+..-.+ .-+.+.+.++..-..+ |-.+|+++.+
T Consensus 160 ~~Lk~KvdAGAdFiITQlfFD~d~-f~~f~~-~~r~~Gi~vPIipGImPI~S~k~l~r~~~l~----Gi~IP~~i~~rLe 233 (565)
T PLN02540 160 AYLKEKVDAGADLIITQLFYDTDI-FLKFVN-DCRQIGITCPIVPGIMPINNYKGFLRMTGFC----KTKIPAEITAALE 233 (565)
T ss_pred HHHHHHHHcCCCEEeeccccCHHH-HHHHHH-HHHhcCCCCCEEeeecccCCHHHHHHHHhcc----CCcCCHHHHHHHH
Confidence 344444422348999999999987 788998 899999753222 1234445444222222 3345665543
Q ss_pred ---ccHHHH-HHHHhhHHHHHHHHhhcCCcEE--EEecCCCCCCHHHHHHHHHHHHHcCC
Q 010734 293 ---ENVALV-EAGCVNLARHIANTKAYGANVV--VAVNMFATDSKAELNAVRNAAMAAGA 346 (502)
Q Consensus 293 ---eNl~AL-~~G~~NL~kHIeNi~~fGvPvV--VAINrF~tDT~~Ei~~v~~~c~~~Gv 346 (502)
.+-+++ +.|++=....++-+...|++=| -++|+. +.+.+.++++|.
T Consensus 234 ~~kddde~v~~~Gieia~e~~~~L~~~Gv~GiHfYTlN~e--------~~v~~ILe~lgl 285 (565)
T PLN02540 234 PIKDNDEAVKAYGIHLGTEMCKKILAHGIKGLHLYTLNLE--------KSALAILMNLGL 285 (565)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEECccCCh--------HHHHHHHHHcCC
Confidence 344553 4699888888999988886632 234443 234455555555
No 226
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=31.53 E-value=1.1e+02 Score=28.55 Aligned_cols=41 Identities=15% Similarity=0.158 Sum_probs=29.5
Q ss_pred hHHHHHHHHhhcCCcEEEE--ecCCCCCCHHHHHHHHHHHHHcC
Q 010734 304 NLARHIANTKAYGANVVVA--VNMFATDSKAELNAVRNAAMAAG 345 (502)
Q Consensus 304 NL~kHIeNi~~fGvPvVVA--INrF~tDT~~Ei~~v~~~c~~~G 345 (502)
+..+-|+.+++.|+++.|. +++...| ++|++.+.+++++.|
T Consensus 141 ~~~~~i~~l~~~gi~~~i~~~v~~~~~~-~~ei~~~~~~l~~~~ 183 (191)
T TIGR02495 141 NILKSLEILLRSGIPFELRTTVHRGFLD-EEDLAEIATRIKENG 183 (191)
T ss_pred HHHHHHHHHHHcCCCEEEEEEEeCCCCC-HHHHHHHHHHhccCC
Confidence 4555566677778776665 4444555 789999999999887
No 227
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=31.48 E-value=1.9e+02 Score=31.34 Aligned_cols=95 Identities=11% Similarity=0.092 Sum_probs=62.2
Q ss_pred ccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHH
Q 010734 293 ENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 372 (502)
Q Consensus 293 eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a 372 (502)
+++.+|+.|- ||.+-++.++---.++...+|+|..-...| ..++++..|+. ....=.+. ..-+..+
T Consensus 249 ~sl~slR~ak-~lld~l~~~r~~~~~p~lv~n~~~~~~~~~---~~dl~~~~~i~-~~~~~p~d---------~~~~~~A 314 (366)
T COG4963 249 PSLASLRNAK-ELLDELKRLRPNDPKPILVLNRVGVPKRPE---PSDLEEILGIE-SLLVLPFD---------PALFGDA 314 (366)
T ss_pred ccHHHHHHHH-HHHHHHHHhCCCCCCceEEeeecCCCCCCC---HHHHHHHhCCc-hhccccCC---------chhhhhh
Confidence 6888999885 888888888888899999999988766555 44555556664 22221111 1122333
Q ss_pred hhcCCCCccccCCCCCCHHHHHHHHHH-HhCC
Q 010734 373 CENVTQPLKFLYPLDVSIKEKIDTIAR-SYGA 403 (502)
Q Consensus 373 ~e~~~~~fk~LY~~~~sI~eKIe~IA~-IYGA 403 (502)
..++ ......| ...+..++|+++++ +||.
T Consensus 315 ~n~g-~~l~E~~-~~~~~~k~l~~la~~l~~~ 344 (366)
T COG4963 315 ANNG-RMLSEVD-PGSPAAKALAQLAQSLGGR 344 (366)
T ss_pred hccC-ccccccC-CCChHHHHHHHHHHHhcCc
Confidence 3222 2233333 46899999999999 9987
No 228
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=31.48 E-value=2.5e+02 Score=29.54 Aligned_cols=58 Identities=19% Similarity=0.102 Sum_probs=37.8
Q ss_pred cCCcEEEEecCCCCCCHHHH--HHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 315 YGANVVVAVNMFATDSKAEL--NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~Ei--~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
.+.|++|++|+..--.++++ +.+..++++.+.. +..+. ++=|+|-.+|-+.+.+.+.+
T Consensus 270 ~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~-i~~iS--Aktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 270 ADKPRILVLNKIDLLDEEEEREKRAALELAALGGP-VFLIS--AVTGEGLDELLRALWELLEE 329 (335)
T ss_pred ccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCC-EEEEE--cCCCCCHHHHHHHHHHHHHh
Confidence 46899999999875333332 2345556666664 43333 34578999998888877754
No 229
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=31.46 E-value=1.6e+02 Score=29.37 Aligned_cols=57 Identities=11% Similarity=0.014 Sum_probs=36.5
Q ss_pred cCCcEEEEecCCCCCC--HHHHHHHHHHHHH-cCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 315 YGANVVVAVNMFATDS--KAELNAVRNAAMA-AGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 315 fGvPvVVAINrF~tDT--~~Ei~~v~~~c~~-~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
-++|+|++.|+..-.. +...+.+.+++.. .+. .+-+.=++-|+|-.+|-+.+++...
T Consensus 112 ~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~---~~~evSAktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 112 VKIPMVICGNKADRDFPREVQRDEVEQLVGGDENC---AYFEVSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred CCCcEEEEEECccchhccccCHHHHHHHHHhcCCC---EEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 3799999999975432 1123344555443 233 2334456678999999999888764
No 230
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=31.25 E-value=4.4e+02 Score=24.57 Aligned_cols=116 Identities=13% Similarity=0.114 Sum_probs=65.1
Q ss_pred HhhcCCcEEEEe---------------cCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcC
Q 010734 312 TKAYGANVVVAV---------------NMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENV 376 (502)
Q Consensus 312 i~~fGvPvVVAI---------------NrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~ 376 (502)
++..++|+|..- -+...|...+...+.+++.+.|.+.+++.. .+.. -+....+.+.+.+++.
T Consensus 87 ~~~~~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~iv~--~~~~-~~~~~~~~~~~~~~~~ 163 (299)
T cd04509 87 AEALKIPLISPGATAPGLTDKKGYPYLFRTGPSDEQQAEALADYIKEYNWKKVAILY--DDDS-YGRGLLEAFKAAFKKK 163 (299)
T ss_pred HhhCCceEEeccCCCcccccccCCCCEEEecCCcHHHHHHHHHHHHHcCCcEEEEEe--cCch-HHHHHHHHHHHHHHHc
Confidence 455778877642 112345667777888888888877666442 2322 2344555555555432
Q ss_pred CCCc--cccCCCC-CCHHHHHHHHHHHhCCCceee--C-HHHHHHHHHHHHCCC-CCCCeeE
Q 010734 377 TQPL--KFLYPLD-VSIKEKIDTIARSYGASGVEY--S-EEAEKQIEMYTGQGF-SGLPICM 431 (502)
Q Consensus 377 ~~~f--k~LY~~~-~sI~eKIe~IA~IYGA~~V~f--S-~~A~kqLk~ie~~Gf-~~LPVCm 431 (502)
.-+. ...|+.. .+..+.++.+.+ -+++-|.. + +.+..=++.+.+.|+ +++++..
T Consensus 164 g~~i~~~~~~~~~~~~~~~~~~~l~~-~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~i~ 224 (299)
T cd04509 164 GGTVVGEEYYPLGTTDFTSLLQKLKA-AKPDVIVLCGSGEDAATILKQAAEAGLTGGYPILG 224 (299)
T ss_pred CCEEEEEecCCCCCccHHHHHHHHHh-cCCCEEEEcccchHHHHHHHHHHHcCCCCCCcEEe
Confidence 1111 1223332 456666666643 12333332 2 677888888889998 4677665
No 231
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=31.12 E-value=1.5e+02 Score=32.25 Aligned_cols=111 Identities=26% Similarity=0.398 Sum_probs=62.8
Q ss_pred cCCcEE-EEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHH-HHHHhhcCCCCccccCCCCCC---
Q 010734 315 YGANVV-VAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIA-VQRACENVTQPLKFLYPLDVS--- 389 (502)
Q Consensus 315 fGvPvV-VAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~-Vv~a~e~~~~~fk~LY~~~~s--- 389 (502)
++..|+ |.+|- .-.++|++.+++.|++.|+.++.+-+ .-.++|+. +..++..+ .-+.=-|++..+
T Consensus 21 ~~~~Via~~aDl--Gq~~~d~~~i~~kA~~~Ga~~~~vvD-------~r~ef~~~~i~~aI~an-A~Yeg~YpL~tsl~R 90 (388)
T PF00764_consen 21 GGYEVIAVTADL--GQPDEDLEAIEEKALKLGASKHIVVD-------ARDEFAEDYIFPAIKAN-ALYEGRYPLSTSLAR 90 (388)
T ss_dssp TTEEEEEEEEES--SST-S-HHHHHHHHHHHT-SEEEEEE--------HHHHHHHTHHHHHHTT---BTTTB--CCCCHH
T ss_pred cCceEEEEEEEC--CCcHHHHHHHHHHHHhcCCceeeecc-------hHHHHHHHHHHHHHHHH-HHhCCCccccccchH
Confidence 444443 33444 33458999999999999996666654 45678855 45777643 345566777666
Q ss_pred --HHHHHHHHHHHhCCCcee--------------------------eCH------HHHHHHHHHHHCCCCCCCeeEee-c
Q 010734 390 --IKEKIDTIARSYGASGVE--------------------------YSE------EAEKQIEMYTGQGFSGLPICMAK-T 434 (502)
Q Consensus 390 --I~eKIe~IA~IYGA~~V~--------------------------fS~------~A~kqLk~ie~~Gf~~LPVCmAK-T 434 (502)
|.+|+-.+|+-+||+-|. ++| .-.++++.+++.|+ ||.+.| .
T Consensus 91 plIa~~~v~~A~~~ga~~vaHG~TgkGNDqvRFe~~~~al~P~l~viaP~Rd~~~~R~~~i~ya~~~gI---pv~~~~~~ 167 (388)
T PF00764_consen 91 PLIAKKLVEVAREEGADAVAHGCTGKGNDQVRFELSIRALAPELKVIAPWRDWEFSREEEIEYAKKHGI---PVPVTKKK 167 (388)
T ss_dssp HHHHHHHHHHHHHHT-SEEE----TTSSHHHHHHHHHHHHSTTSEEE-GGGHHHHHHHHHHHHHHHTT-------SS---
T ss_pred HHHHHHHHHHHHHcCCeEEeccCCcCCCchhHHHHHHHHhCcCCcEecccchhhhhHHHHHHHHHHcCC---CCCCCCCC
Confidence 567888888877776554 111 13566777888887 999885 6
Q ss_pred CCCC
Q 010734 435 QYSF 438 (502)
Q Consensus 435 qySl 438 (502)
+||.
T Consensus 168 ~yS~ 171 (388)
T PF00764_consen 168 PYSI 171 (388)
T ss_dssp SSEE
T ss_pred CCCc
Confidence 7864
No 232
>PLN03127 Elongation factor Tu; Provisional
Probab=31.07 E-value=2.1e+02 Score=31.31 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=22.6
Q ss_pred hHHHHHHHHhhcCCcE-EEEecCCCCCCHHH
Q 010734 304 NLARHIANTKAYGANV-VVAVNMFATDSKAE 333 (502)
Q Consensus 304 NL~kHIeNi~~fGvPv-VVAINrF~tDT~~E 333 (502)
.-+.|+..++.+|+|. ||+||+...=+++|
T Consensus 164 qt~e~l~~~~~~gip~iIvviNKiDlv~~~~ 194 (447)
T PLN03127 164 QTKEHILLARQVGVPSLVVFLNKVDVVDDEE 194 (447)
T ss_pred hHHHHHHHHHHcCCCeEEEEEEeeccCCHHH
Confidence 3467999999999994 78999986533333
No 233
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=30.97 E-value=5.2e+02 Score=25.50 Aligned_cols=87 Identities=16% Similarity=0.131 Sum_probs=45.5
Q ss_pred HHhhHHHHHHHHhh-cCCcEE-EEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCC
Q 010734 301 GCVNLARHIANTKA-YGANVV-VAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQ 378 (502)
Q Consensus 301 G~~NL~kHIeNi~~-fGvPvV-VAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~ 378 (502)
|+.++.+.|+.+++ .++++. |..|+-.+ .++.+.+.++++..|.. +. . -+---..|.++...+ .
T Consensus 157 ~~~~l~~~i~~~~~~~~~~~~giv~n~~~~--~~~~~~~e~l~~~~~~~-vl-~---------~Ip~~~~v~~A~~~g-~ 222 (275)
T TIGR01287 157 AANNICKGILKYAKSGGVRLGGLICNSRNV--DDEKELIDEFAKKLGTQ-LI-H---------FVPRSNIVQKAEIRK-M 222 (275)
T ss_pred HHHHHHHHHHHHHhcCCCeeeEEEEcCCCC--chHHHHHHHHHHHhCCc-eE-E---------ECCCChHHHHHHHcC-C
Confidence 45666666655543 566654 44576433 34444567777777663 21 1 122233455554432 1
Q ss_pred CccccCCCCCCHHHHHHHHHH-HhC
Q 010734 379 PLKFLYPLDVSIKEKIDTIAR-SYG 402 (502)
Q Consensus 379 ~fk~LY~~~~sI~eKIe~IA~-IYG 402 (502)
.+ +.|+.+.+..+-++.+++ +-.
T Consensus 223 pv-~~~~p~s~~a~~~~~la~ell~ 246 (275)
T TIGR01287 223 TV-IEYDPESEQANEYRELAKKIYE 246 (275)
T ss_pred ce-EEeCCCCHHHHHHHHHHHHHHh
Confidence 12 235555566677778887 543
No 234
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=30.95 E-value=1.2e+02 Score=30.62 Aligned_cols=22 Identities=9% Similarity=0.223 Sum_probs=17.0
Q ss_pred HHHHHHhhcCCcEEEEecCCCC
Q 010734 307 RHIANTKAYGANVVVAVNMFAT 328 (502)
Q Consensus 307 kHIeNi~~fGvPvVVAINrF~t 328 (502)
++++-.+.+++|++|++|+...
T Consensus 114 ~i~~~~~~~~~P~iivvNK~D~ 135 (267)
T cd04169 114 KLFEVCRLRGIPIITFINKLDR 135 (267)
T ss_pred HHHHHHHhcCCCEEEEEECCcc
Confidence 4455566789999999999754
No 235
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=30.92 E-value=3.6e+02 Score=25.17 Aligned_cols=56 Identities=9% Similarity=0.052 Sum_probs=35.8
Q ss_pred CcEEEEecCCCC---CC--------HHHHHHHHHHHHHcCCCeEEEcCcc--ccCccchhHHHHHHHHHhhc
Q 010734 317 ANVVVAVNMFAT---DS--------KAELNAVRNAAMAAGAFDAVVCSHH--AHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 317 vPvVVAINrF~t---DT--------~~Ei~~v~~~c~~~Gv~~~~vs~~w--akGGeGa~eLA~~Vv~a~e~ 375 (502)
-++||.+++... ++ ..++..+.+.| |.+-+..++.. ++-+.+-.+|-+.|-+.+.+
T Consensus 117 ~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c---~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 117 DHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKC---GGRYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred hcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHh---CCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 578888887543 22 24444444444 55434666666 56677788888888888865
No 236
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=30.77 E-value=4e+02 Score=29.60 Aligned_cols=140 Identities=14% Similarity=0.203 Sum_probs=70.8
Q ss_pred eecCceeEEcccccchhcccCchHHHHHHHHHhcCCCC---eEEe-----eccccccccchhcccccccc-CCCCCCeEE
Q 010734 193 TLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGG---FVVT-----EAGFGADIGAEKFMNIKCRY-SGLTPQCAV 263 (502)
Q Consensus 193 TlEgtPa~vHgGPFANIAhG~nSviAtk~alkla~~~d---yvVT-----EAGFgaDlGaEKF~dIkcr~-~gl~P~a~V 263 (502)
.++|.=+++||. .||.+.-....-+. +..+ +..| +..||++ ||+.+--=+. .-.+|++++
T Consensus 22 ~i~~~~~i~Hgp------~GC~~~~~~~~~~~--~~~~~~p~~tt~l~e~dvv~G~~---~~L~~aI~~~~~~~~P~~I~ 90 (511)
T TIGR01278 22 SMKNVHAVMHAP------QGDDYVNVMFSMLE--RTPNFPPVTTSVVDRRDLARGSQ---TRLVDTVRRVDDRFKPDLIV 90 (511)
T ss_pred hcCCcEEEeeCC------CCccchHHhhhhhh--cCCCCCceeeccCCccceecchH---HHHHHHHHHHHHhcCCCEEE
Confidence 466777899995 59987643222222 1122 2344 5677763 6655422222 235899999
Q ss_pred EEeee-------------hhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHH-hh----cCCcEEEEecC
Q 010734 264 IVATI-------------RALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANT-KA----YGANVVVAVNM 325 (502)
Q Consensus 264 lVaTv-------------RALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi-~~----fGvPvVVAINr 325 (502)
|++|+ +-++.. |.+..... . +.+.....++-.+-+..|-++...= .+ -.-|.|-.|--
T Consensus 91 V~sTC~selIGdDi~~~~~~~~~~-~~pvi~v~--t-~gf~g~~~~g~~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~ 166 (511)
T TIGR01278 91 VTPSCTSSLLQEDLGNLAAAAGLD-KSKVIVAD--V-NAYRRKENQAADRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGP 166 (511)
T ss_pred EeCCChHHHhccCHHHHHHHhccC-CCcEEEec--C-CCcccchhHHHHHHHHHHHHHHHhccccccccCCCCcEEEEeC
Confidence 99998 222222 22211110 0 1222222233344444444443221 11 11233444444
Q ss_pred CCCC--CHHHHHHHHHHHHHcCCC
Q 010734 326 FATD--SKAELNAVRNAAMAAGAF 347 (502)
Q Consensus 326 F~tD--T~~Ei~~v~~~c~~~Gv~ 347 (502)
++.| +..++..|++..++.|+.
T Consensus 167 ~~l~~~~~~D~~elkrlL~~lGi~ 190 (511)
T TIGR01278 167 ASLGFHHRHDLIELRRLLKTLGIE 190 (511)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCe
Confidence 4333 677888899999999996
No 237
>PRK08227 autoinducer 2 aldolase; Validated
Probab=30.60 E-value=4.4e+02 Score=27.26 Aligned_cols=97 Identities=14% Similarity=0.205 Sum_probs=54.9
Q ss_pred HHhhHHHHHHHHhhcCCcEEEEecCCC--CCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCC
Q 010734 301 GCVNLARHIANTKAYGANVVVAVNMFA--TDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQ 378 (502)
Q Consensus 301 G~~NL~kHIeNi~~fGvPvVVAINrF~--tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~ 378 (502)
=+.+|.+=++...+||+|++.-.=+=+ .|...-|....+.+.++|+. + +-.-|.. ..++ +|+++|. .
T Consensus 125 ~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGAD-i-VK~~y~~-----~~f~-~vv~a~~---v 193 (264)
T PRK08227 125 SIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQ-I-IKTYYVE-----EGFE-RITAGCP---V 193 (264)
T ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCC-E-EecCCCH-----HHHH-HHHHcCC---C
Confidence 356788888999999999887332211 34445677778888899995 4 5556651 2333 4444442 1
Q ss_pred CccccCCCCCCHHHHHHHHHH--HhCCCceee
Q 010734 379 PLKFLYPLDVSIKEKIDTIAR--SYGASGVEY 408 (502)
Q Consensus 379 ~fk~LY~~~~sI~eKIe~IA~--IYGA~~V~f 408 (502)
..-..=-...+.++=++.+-. --||.+|.+
T Consensus 194 PVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~ 225 (264)
T PRK08227 194 PIVIAGGKKLPERDALEMCYQAIDEGASGVDM 225 (264)
T ss_pred cEEEeCCCCCCHHHHHHHHHHHHHcCCceeee
Confidence 111111222244444454444 346666664
No 238
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=30.53 E-value=1.7e+02 Score=30.78 Aligned_cols=98 Identities=18% Similarity=0.174 Sum_probs=59.9
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcC-C--CC-
Q 010734 304 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENV-T--QP- 379 (502)
Q Consensus 304 NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~-~--~~- 379 (502)
+.++||+-+|+.|..+++.+=.-..-|++++..+.+.+.+.|+..+.+++.. |.--=.+.++ .+.++.+. + -+
T Consensus 115 ~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~--G~~~P~~v~~-~v~~l~~~l~~~i~i 191 (333)
T TIGR03217 115 VSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDSA--GAMLPDDVRD-RVRALKAVLKPETQV 191 (333)
T ss_pred HHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccCC--CCCCHHHHHH-HHHHHHHhCCCCceE
Confidence 6789999999999998776643334567888888888899999877777764 2222233333 33333221 1 11
Q ss_pred -ccccCCCCCCHHHHHHHHHH-HhCCCcee
Q 010734 380 -LKFLYPLDVSIKEKIDTIAR-SYGASGVE 407 (502)
Q Consensus 380 -fk~LY~~~~sI~eKIe~IA~-IYGA~~V~ 407 (502)
|+.==++.+.+. +.++- -.||+.|.
T Consensus 192 g~H~HnnlGla~A---NslaAi~aGa~~iD 218 (333)
T TIGR03217 192 GFHAHHNLSLAVA---NSIAAIEAGATRID 218 (333)
T ss_pred EEEeCCCCchHHH---HHHHHHHhCCCEEE
Confidence 333333334443 44555 67777665
No 239
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=30.51 E-value=1.6e+02 Score=26.07 Aligned_cols=55 Identities=13% Similarity=-0.003 Sum_probs=33.9
Q ss_pred cCCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 010734 315 YGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 371 (502)
Q Consensus 315 fGvPvVVAINrF~tDT-~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~ 371 (502)
-++|++++.|+-.-.. +...+.+.++|++.+...+..+. ++-|+|-.++=+.+++
T Consensus 113 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S--a~~~~~v~~~~~~~~~ 168 (170)
T cd04116 113 ESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETS--AKDATNVAAAFEEAVR 168 (170)
T ss_pred CCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEE--CCCCCCHHHHHHHHHh
Confidence 5799999999854321 11234567888888753343333 4567887776555543
No 240
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=30.46 E-value=87 Score=28.53 Aligned_cols=59 Identities=10% Similarity=0.112 Sum_probs=41.4
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 315 YGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
.+.|+++++|+-.-.. .+.+.+.+++++.|.. .-+-..=++=|+|-.+|-+.+.+...+
T Consensus 90 ~~~~ii~v~nK~Dl~~-~~~~~~~~~~~~~~~~-~p~~~~Sa~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 90 VSKRQIAVISKTDMPD-ADVAATRKLLLETGFE-EPIFELNSHDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred CCCCeEEEEEccccCc-ccHHHHHHHHHHcCCC-CCEEEEECCCccCHHHHHHHHHHhchh
Confidence 5789999999976422 4556678888888862 112233456689999998888877643
No 241
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=30.46 E-value=1.7e+02 Score=29.22 Aligned_cols=95 Identities=16% Similarity=0.115 Sum_probs=63.8
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccC
Q 010734 305 LARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLY 384 (502)
Q Consensus 305 L~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY 384 (502)
...|+...-+.|+|+|+.-- .=|++|++.+.+ |. .++. +.++-.|+-|---...|++.....+ -. |
T Consensus 73 ~~~~~~~al~~G~~vvigtt---G~s~~~~~~l~~-aa-~~~~-v~~s~n~s~g~~~~~~l~~~aa~~l-------~~-~ 138 (257)
T PRK00048 73 TLENLEFALEHGKPLVIGTT---GFTEEQLAELEE-AA-KKIP-VVIAPNFSIGVNLLMKLAEKAAKYL-------GD-Y 138 (257)
T ss_pred HHHHHHHHHHcCCCEEEECC---CCCHHHHHHHHH-Hh-cCCC-EEEECcchHHHHHHHHHHHHHHHhc-------CC-C
Confidence 35567777889999999832 335788888888 44 6674 7899999998877777777665433 22 5
Q ss_pred CCCCCHHHHHHHHHHHhCCCceee-CHHHHHHHHHHHHC
Q 010734 385 PLDVSIKEKIDTIARSYGASGVEY-SEEAEKQIEMYTGQ 422 (502)
Q Consensus 385 ~~~~sI~eKIe~IA~IYGA~~V~f-S~~A~kqLk~ie~~ 422 (502)
+. .|.| +-....+.. |-.|++-.+.+.+.
T Consensus 139 d~--ei~E-------~HH~~K~DaPSGTA~~l~~~i~~~ 168 (257)
T PRK00048 139 DI--EIIE-------AHHRHKVDAPSGTALKLAEAIAEA 168 (257)
T ss_pred CE--EEEE-------ccCCCCCCCCCHHHHHHHHHHHHh
Confidence 43 2222 344556666 77777777777663
No 242
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=30.44 E-value=1.3e+02 Score=28.34 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=44.9
Q ss_pred hhcCCcEEEEecCCCCC-CHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHH
Q 010734 313 KAYGANVVVAVNMFATD-SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAV 369 (502)
Q Consensus 313 ~~fGvPvVVAINrF~tD-T~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~V 369 (502)
+-|+-|||=.|++-.-+ +++.++..+++.+.+|+... -.+=+.=|+|-.+|.+-+
T Consensus 86 ~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~i--f~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 86 SMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEI--FEVSAVTGEGIEELKDYL 141 (143)
T ss_pred cccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCe--EEEECCCCcCHHHHHHHH
Confidence 35889999999998777 78999999999999999753 555667789988887643
No 243
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=30.37 E-value=2.8e+02 Score=26.73 Aligned_cols=93 Identities=12% Similarity=0.022 Sum_probs=56.3
Q ss_pred cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCCCCHHH
Q 010734 315 YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKE 392 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~E--i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~~sI~e 392 (502)
.++|+|++.|+-.-....+ .+...+++.+.+.. +..+ =++=|+|-.+|=+.+++.+... ...+..=+. .
T Consensus 105 ~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~--SA~~~~gv~~l~~~l~~~~~~~-~~~~~~~~~---~-- 175 (221)
T cd04148 105 EDRPIILVGNKSDLARSREVSVQEGRACAVVFDCK-FIET--SAGLQHNVDELLEGIVRQIRLR-RDSKEKNER---R-- 175 (221)
T ss_pred CCCCEEEEEEChhccccceecHHHHHHHHHHcCCe-EEEe--cCCCCCCHHHHHHHHHHHHHhh-hccccccCc---c--
Confidence 5799999999865322222 23345667777774 4332 2455678888888877776531 111111110 0
Q ss_pred HHHHHHH-HhCCCceeeCHHHHHHHHHHHH
Q 010734 393 KIDTIAR-SYGASGVEYSEEAEKQIEMYTG 421 (502)
Q Consensus 393 KIe~IA~-IYGA~~V~fS~~A~kqLk~ie~ 421 (502)
-. .|.+........|++.|.++..
T Consensus 176 -----~~~~~~~r~~~~~~~a~~~l~~~~~ 200 (221)
T cd04148 176 -----SRRAYRGRRESLTSKAKRFLGKLVA 200 (221)
T ss_pred -----ccccccCccchHHHHHHHHHHHHhc
Confidence 24 7778888888888888887765
No 244
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=30.34 E-value=2.5e+02 Score=24.83 Aligned_cols=67 Identities=16% Similarity=0.046 Sum_probs=37.3
Q ss_pred hHHHHHHHHh--hcCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHH
Q 010734 304 NLARHIANTK--AYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 372 (502)
Q Consensus 304 NL~kHIeNi~--~fGvPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a 372 (502)
++...++..+ ..++|++++.|+-.-..+. +.+...++++..+.. +..+.. ..|.+|-.++=+.+++.
T Consensus 92 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa-~~~~~~v~~~f~~l~~~ 162 (165)
T cd04146 92 QLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCL-FFEVSA-AEDYDGVHSVFHELCRE 162 (165)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCE-EEEeCC-CCCchhHHHHHHHHHHH
Confidence 3444455544 3589999999986432111 123445667777763 443333 33445666666665543
No 245
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=30.19 E-value=1.9e+02 Score=25.62 Aligned_cols=58 Identities=14% Similarity=0.198 Sum_probs=34.0
Q ss_pred HHhhcCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 010734 311 NTKAYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 371 (502)
Q Consensus 311 Ni~~fGvPvVVAINrF~tDT~~E--i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~ 371 (502)
+...-+.|+|++.|+-.-..+.+ .+.++++|++.+.. +..+ =++=|+|-.++-+.+++
T Consensus 102 ~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~--Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 102 NLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLL-FLEC--SAKTGENVEDAFLETAK 161 (166)
T ss_pred HhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCE-EEEE--ECCCCCCHHHHHHHHHH
Confidence 33345789999999854322222 24566778877774 4333 34556676665554443
No 246
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=30.19 E-value=1.5e+02 Score=32.88 Aligned_cols=46 Identities=26% Similarity=0.270 Sum_probs=34.0
Q ss_pred hhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcC
Q 010734 303 VNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCS 353 (502)
Q Consensus 303 ~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~ 353 (502)
.|++.-.+-+++||+|+|+-- .| -+++..+.+.|.++|+.+.++--
T Consensus 188 dN~~~m~~la~~yg~pvVv~~----~d-l~~L~~lv~~~~~~GI~dIILDP 233 (450)
T PRK04165 188 ENYEEMAELAKEYNCPLVVKA----PN-LEELKELVEKLQAAGIKDLVLDP 233 (450)
T ss_pred chHHHHHHHHHHcCCcEEEEc----hh-HHHHHHHHHHHHHcCCCcEEECC
Confidence 466666677888999999822 23 67888888899999996655544
No 247
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=30.16 E-value=1.4e+02 Score=30.15 Aligned_cols=102 Identities=19% Similarity=0.178 Sum_probs=51.6
Q ss_pred HhhHHHHHHHHhh-cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCcc---ccCccc---hhHHHHHHHHHhh
Q 010734 302 CVNLARHIANTKA-YGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHH---AHGGKG---AVDLGIAVQRACE 374 (502)
Q Consensus 302 ~~NL~kHIeNi~~-fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~w---akGGeG---a~eLA~~Vv~a~e 374 (502)
++.+.++....++ ..+|+++.||-+..+..+|...+.+..+ .|+. +..-+.. .+|+.- -.++.+.+++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~pvi~Si~~~~~~~~~d~~~~a~~~~-~~ad-~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~ 158 (295)
T PF01180_consen 81 LERLRPILKEAKKDVDIPVIASINGDSEEEIEDWAELAKRLE-AGAD-ALELNLSCPNVPGGRPFGQDPELVAEIVRAVR 158 (295)
T ss_dssp HHHHHHTHHHTTCH-CEEEEEEE-TSSSGHHHHHHHHHHHHH-HHCS-EEEEESTSTTSTTSGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccccceeEEEEeecCCchhHHHHHHHHHHhc-CcCC-ceEEEeeccCCCCccccccCHHHHHHHHHHHH
Confidence 3345555544443 5899999999998777777776666655 6774 4433322 233322 2345555555444
Q ss_pred cC---CCCccccCCCCCCHHHHHHHHHH--HhCCCcee
Q 010734 375 NV---TQPLKFLYPLDVSIKEKIDTIAR--SYGASGVE 407 (502)
Q Consensus 375 ~~---~~~fk~LY~~~~sI~eKIe~IA~--IYGA~~V~ 407 (502)
.. |=-.|.-++. +-.+....+++ -+|+++|.
T Consensus 159 ~~~~~Pv~vKL~p~~--~~~~~~~~~~~~~~~g~~gi~ 194 (295)
T PF01180_consen 159 EAVDIPVFVKLSPNF--TDIEPFAIAAELAADGADGIV 194 (295)
T ss_dssp HHHSSEEEEEE-STS--SCHHHHHHHHHHHTHTECEEE
T ss_pred hccCCCEEEEecCCC--CchHHHHHHHHhhccceeEEE
Confidence 21 1113333322 22333333433 56777766
No 248
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=30.15 E-value=1.6e+02 Score=25.88 Aligned_cols=54 Identities=17% Similarity=0.139 Sum_probs=31.6
Q ss_pred cCCcEEEEecCCCCCCHHHH-HHHHHHHHHc-CCCeEEEcCccccCccchhHHHHHHHH
Q 010734 315 YGANVVVAVNMFATDSKAEL-NAVRNAAMAA-GAFDAVVCSHHAHGGKGAVDLGIAVQR 371 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~Ei-~~v~~~c~~~-Gv~~~~vs~~wakGGeGa~eLA~~Vv~ 371 (502)
.+.|+++++|+..-...+++ +.+.++.++. +.. +..+ =++-|+|-.+|-+.+.+
T Consensus 113 ~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~gi~~l~~~i~~ 168 (170)
T cd01898 113 LEKPRIVVLNKIDLLDEEELFELLKELLKELWGKP-VFPI--SALTGEGLDELLRKLAE 168 (170)
T ss_pred cccccEEEEEchhcCCchhhHHHHHHHHhhCCCCC-EEEE--ecCCCCCHHHHHHHHHh
Confidence 47999999999764333333 3445555553 443 3333 34556777777666554
No 249
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=30.11 E-value=2.9e+02 Score=30.31 Aligned_cols=114 Identities=11% Similarity=0.051 Sum_probs=75.1
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC--eEEEcCcc---ccCccchhHHHHHHHHHhhcCCC
Q 010734 304 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF--DAVVCSHH---AHGGKGAVDLGIAVQRACENVTQ 378 (502)
Q Consensus 304 NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~--~~~vs~~w---akGGeGa~eLA~~Vv~a~e~~~~ 378 (502)
|+++..+-.++||.|+|| +..|..++...+.+.+.++|+. +.++--.= ..|=+-+.+--+++-.++=++..
T Consensus 228 Ny~~ia~lAk~yg~~Vvv----~s~~Din~ak~Ln~kL~~~Gv~~eDIVlDP~t~alG~Gieya~s~~erIRraALkgD~ 303 (389)
T TIGR00381 228 DYEKIANAAKKYGHVVLS----WTIMDINMQKTLNRYLLKRGLMPRDIVMDPTTCALGYGIEFSITNMERIRLSGLKGDT 303 (389)
T ss_pred hHHHHHHHHHHhCCeEEE----EcCCcHHHHHHHHHHHHHcCCCHHHEEEcCCCccccCCHHHHHHHHHHHHHHHhcCCc
Confidence 888999999999999998 5668889998888888899997 65543322 25555555555444443322222
Q ss_pred Cccc--------------------cCC---CCCCHHHHHHHHHH-HhCCCcee-eCHHHHHHHHHHHH
Q 010734 379 PLKF--------------------LYP---LDVSIKEKIDTIAR-SYGASGVE-YSEEAEKQIEMYTG 421 (502)
Q Consensus 379 ~fk~--------------------LY~---~~~sI~eKIe~IA~-IYGA~~V~-fS~~A~kqLk~ie~ 421 (502)
.|.| -|. .--+++|=+...+- +=|++=+. ..|.+-+.++++-+
T Consensus 304 ~L~~Pii~~~~~~w~~kEa~~~~~~wG~~~~Rg~lwE~~ta~~~~~aG~di~~m~HP~sv~~~k~~~~ 371 (389)
T TIGR00381 304 DLNMPMSSGTTNAWGAREAWMVDSEWGPREYRGPLWEIITGLTMMLAGVDLFMMLHPVSVAVLKEIGN 371 (389)
T ss_pred CCCCCeeccchhhhhheeeccCCCCCCChHHhchhhhHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHH
Confidence 2221 111 11256776777777 77887554 67888888888765
No 250
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=29.99 E-value=3.3e+02 Score=25.36 Aligned_cols=45 Identities=9% Similarity=-0.071 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCC
Q 010734 331 KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLD 387 (502)
Q Consensus 331 ~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~ 387 (502)
..+...|++.|-+.+++ ++.+ ++-|+++++++.. +-+++.+|+..
T Consensus 92 ~~D~~~IRR~Av~~~IP-~~T~----------l~tA~a~~~al~~-~~~~~~~~~~~ 136 (142)
T PRK05234 92 DPDVKALLRLADVWNIP-VATN----------RATADFLISSLLF-DDEVEILIPDY 136 (142)
T ss_pred cchHHHHHHHHHHcCCC-EEcC----------HHHHHHHHHHHhc-ccchhhcccch
Confidence 44677899999999995 6544 6788888888876 66788887754
No 251
>PRK08228 L(+)-tartrate dehydratase subunit beta; Validated
Probab=29.98 E-value=85 Score=31.46 Aligned_cols=137 Identities=23% Similarity=0.375 Sum_probs=86.9
Q ss_pred HHHHH-HhcCcEEeecCCCCceeecccccchhHHHHhhhccCcCcceeecCceeEEcccccchhcccCchHHHHHHHHHh
Q 010734 147 ADMRE-RLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKL 225 (502)
Q Consensus 147 ~Dlk~-Rl~~ivv~~~~~g~pvta~DL~~~GAm~~lLkdAi~PNLvQTlEgtPa~vHgGPFANIAhG~nSviAtk~alkl 225 (502)
+|+++ |+|.+|. -+|.-+|++| . |-.-|+ |.=+| |=--|+|.+ +.|+||-..-- +.
T Consensus 13 e~i~~L~vGD~V~---LsG~IytaRD-a---AHkrl~-e~g~~-lP~dl~g~~-Iyh~GP~~~~~-~~------------ 69 (204)
T PRK08228 13 EDLQDIKVGDVIY---LTGTLVTCRD-V---AHRRLI-ELGRE-LPVDLNGGA-IFHAGPIVRPK-KN------------ 69 (204)
T ss_pred HHHhhCCCCCEEE---EEEEEEEEeH-H---HHHHHH-HcCCC-CCcCCCCCE-EEEeCCCCCcc-CC------------
Confidence 44432 6777763 6899999999 3 333344 43333 667778776 78999964210 00
Q ss_pred cCCCCeEEeeccccccccchhccccccccCCCCCCeEEEE-------eeehhhhhcCCCCCccCCCCCchhcccccHHHH
Q 010734 226 VGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIV-------ATIRALKMHGGGPQVVAGKPLDHAYLNENVALV 298 (502)
Q Consensus 226 a~~~dyvVTEAGFgaDlGaEKF~dIkcr~~gl~P~a~VlV-------aTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL 298 (502)
.++|++-=+|==+..=+++|..--.+..|++ .++ .|+.|+|=||++....+|
T Consensus 70 --~g~~~~gs~GPTTS~RMd~y~~~~l~~~G~~----~~IGKG~~~~~~~~a~k~~gavYl~~~G--------------- 128 (204)
T PRK08228 70 --DDKFEMVSVGPTTSMRMEKFEKEFIEQTGVK----LIVGKGGMGPGTEEGCQEFKALHCVFPA--------------- 128 (204)
T ss_pred --CCCcEEEEeCCCcHHHhhhhHHHHHHhCCcE----EEEECCCCCHHHHHHHHHcCEEEEEcCc---------------
Confidence 1248888888888888888876666665544 222 367899999988765554
Q ss_pred HHHHhhHH-HHHHHHhh-----cCC-------------cEEEEecCCCCC
Q 010734 299 EAGCVNLA-RHIANTKA-----YGA-------------NVVVAVNMFATD 329 (502)
Q Consensus 299 ~~G~~NL~-kHIeNi~~-----fGv-------------PvVVAINrF~tD 329 (502)
|++=|. +||+.++- +|. |++|+|-..-.|
T Consensus 129 --GaaaL~a~~Ik~v~~V~~~dLGmpEAv~~l~VedfGP~iV~iD~~Gn~ 176 (204)
T PRK08228 129 --GCAVLAATQVEEIEDAQWRDLGMPETLWVCRVKEFGPLIVSIDTHGNN 176 (204)
T ss_pred --HHHHHHHhhccEEEEeeeccCCCccEEEEEEEeeccceEEEEECCCcc
Confidence 333333 77766543 676 999999444333
No 252
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=29.89 E-value=1.1e+02 Score=33.04 Aligned_cols=78 Identities=6% Similarity=-0.006 Sum_probs=49.0
Q ss_pred ehhhhhcCCCC-CccCCCCCchhcccccHHHHHHHH--hhHHHHHHHHhhc--CCcEEEE-ecCCCCCCHHHHHHHHHHH
Q 010734 268 IRALKMHGGGP-QVVAGKPLDHAYLNENVALVEAGC--VNLARHIANTKAY--GANVVVA-VNMFATDSKAELNAVRNAA 341 (502)
Q Consensus 268 vRALK~HGG~~-~~~~~~pl~~~l~~eNl~AL~~G~--~NL~kHIeNi~~f--GvPvVVA-INrF~tDT~~Ei~~v~~~c 341 (502)
++++|- |+.. ...+| + +..+++.++.+.++. ....+-|+.+++. |+.+-.. |==||.+|+++++...+++
T Consensus 247 l~~m~~-g~~~~~l~Ig--l-ESgs~~vLk~m~r~~~~~~~~~~i~~lr~~~~~i~i~t~~IvGfPgET~edf~~tl~fi 322 (440)
T PRK14862 247 IPLMAE-GKILPYLDIP--F-QHASPRVLKRMKRPASVEKTLERIKKWREICPDLTIRSTFIVGFPGETEEDFQMLLDFL 322 (440)
T ss_pred HHHHhc-CCCccccccc--c-ccCCHHHHHhcCCCCCHHHHHHHHHHHHHHCCCceecccEEEECCCCCHHHHHHHHHHH
Confidence 566665 5432 22222 2 445667777777653 3455667777764 3333221 2247999999999999999
Q ss_pred HHcCCCeE
Q 010734 342 MAAGAFDA 349 (502)
Q Consensus 342 ~~~Gv~~~ 349 (502)
++.+...+
T Consensus 323 ~e~~~d~~ 330 (440)
T PRK14862 323 KEAQLDRV 330 (440)
T ss_pred HHcCCCee
Confidence 99998533
No 253
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=29.81 E-value=1.9e+02 Score=29.81 Aligned_cols=45 Identities=13% Similarity=0.021 Sum_probs=33.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCcc
Q 010734 316 GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGK 360 (502)
Q Consensus 316 GvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGe 360 (502)
|+|+=|.|--=.=+.++|+....+.|.+.|+..+-.|+.|..+|.
T Consensus 131 ~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gA 175 (257)
T PRK05283 131 NVLLKVIIETGELKDEALIRKASEIAIKAGADFIKTSTGKVPVNA 175 (257)
T ss_pred CceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCC
Confidence 577767666433344457999999999999987778899987663
No 254
>PRK00093 GTP-binding protein Der; Reviewed
Probab=29.70 E-value=1.9e+02 Score=30.52 Aligned_cols=63 Identities=21% Similarity=0.173 Sum_probs=40.0
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHc-----CCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 309 IANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAA-----GAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 309 IeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~-----Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
+.-+...|.|+||++|+..-..+++.+.+.+..++. .++ +.. .=++-|.|-.+|-+.+.+..+
T Consensus 277 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~-i~~--~SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 277 AGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAP-IVF--ISALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred HHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCC-EEE--EeCCCCCCHHHHHHHHHHHHH
Confidence 334556899999999998876666666666554432 232 322 224556777777777666554
No 255
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=29.48 E-value=1.5e+02 Score=30.36 Aligned_cols=50 Identities=16% Similarity=0.046 Sum_probs=33.4
Q ss_pred HhhHHHHHHHHhhcCC-cEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEc
Q 010734 302 CVNLARHIANTKAYGA-NVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVC 352 (502)
Q Consensus 302 ~~NL~kHIeNi~~fGv-PvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs 352 (502)
+....+.|+.+++.|+ ++.+-.--.+..+++|+..+.+++++.|+. +-+.
T Consensus 143 ~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv~-v~~i 193 (331)
T PRK00164 143 LDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGIQ-LRFI 193 (331)
T ss_pred HHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCCe-EEEE
Confidence 3455566677777787 544322234456778999999999999984 5443
No 256
>CHL00071 tufA elongation factor Tu
Probab=29.44 E-value=1e+02 Score=32.86 Aligned_cols=43 Identities=26% Similarity=0.189 Sum_probs=29.5
Q ss_pred hHHHHHHHHhhcCCc-EEEEecCCCCCCHHHH-----HHHHHHHHHcCC
Q 010734 304 NLARHIANTKAYGAN-VVVAVNMFATDSKAEL-----NAVRNAAMAAGA 346 (502)
Q Consensus 304 NL~kHIeNi~~fGvP-vVVAINrF~tDT~~Ei-----~~v~~~c~~~Gv 346 (502)
.-+.|+..++++|+| +||++|+...-+++|+ +.+.++.+..|.
T Consensus 115 qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 115 QTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 456789999999999 7799999765443442 245555555553
No 257
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=29.34 E-value=3e+02 Score=24.76 Aligned_cols=59 Identities=15% Similarity=0.079 Sum_probs=36.2
Q ss_pred HHhhcCCcEEEEecCCCCCCHHHHH-HHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHH
Q 010734 311 NTKAYGANVVVAVNMFATDSKAELN-AVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 372 (502)
Q Consensus 311 Ni~~fGvPvVVAINrF~tDT~~Ei~-~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a 372 (502)
-++..+.|+|+++|+-.--+++++. ++.++.+..+. .+.. .=++-|+|-.+|-+.+.+.
T Consensus 24 ~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~-~ii~--vSa~~~~gi~~L~~~i~~~ 83 (155)
T cd01849 24 LIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPT-IPFK--ISATNGQGIEKKESAFTKQ 83 (155)
T ss_pred HHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCc-eEEE--EeccCCcChhhHHHHHHHH
Confidence 4556789999999998775566553 34344333343 2222 2245577877777776554
No 258
>PRK03670 competence damage-inducible protein A; Provisional
Probab=29.31 E-value=3.3e+02 Score=27.75 Aligned_cols=76 Identities=20% Similarity=0.240 Sum_probs=43.7
Q ss_pred HHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCCCCH
Q 010734 311 NTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSI 390 (502)
Q Consensus 311 Ni~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~~sI 390 (502)
-++.+|+.+.-. .-..|.+++|....+.+.+... ++++++ ||-|.-. +|.+
T Consensus 28 ~L~~~G~~v~~~--~iV~Dd~~~I~~~l~~a~~~~~-DlVItt----GGlGpt~---------------------dD~T- 78 (252)
T PRK03670 28 KLTEKGYWVRRI--TTVGDDVEEIKSVVLEILSRKP-EVLVIS----GGLGPTH---------------------DDVT- 78 (252)
T ss_pred HHHHCCCEEEEE--EEcCCCHHHHHHHHHHHhhCCC-CEEEEC----CCccCCC---------------------CCch-
Confidence 367788886422 2247888888777666554445 466655 7766411 1111
Q ss_pred HHHHHHHHHHhCCCceeeCHHHHHHHHHH
Q 010734 391 KEKIDTIARSYGASGVEYSEEAEKQIEMY 419 (502)
Q Consensus 391 ~eKIe~IA~IYGA~~V~fS~~A~kqLk~i 419 (502)
.+.||+. ....+++.+++.+.|+++
T Consensus 79 ---~eava~a-~g~~l~~~~e~~~~i~~~ 103 (252)
T PRK03670 79 ---MLAVAEA-LGRELVLCEDCLERIKEF 103 (252)
T ss_pred ---HHHHHHH-hCCCCcCCHHHHHHHHHH
Confidence 2344444 335577777777777754
No 259
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=29.31 E-value=1.7e+02 Score=26.34 Aligned_cols=57 Identities=7% Similarity=-0.122 Sum_probs=34.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 316 GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 316 GvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
++|+||+.|+..-...+......++++..+.. +. +.=++=|+|-.++=+.+++.+-+
T Consensus 104 ~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~--e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 104 NIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQ-YY--EISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred CCcEEEEEEchhcccccCCHHHHHHHHHcCCE-EE--EEeCCCCCChHHHHHHHHHHHHh
Confidence 89999999998754222112334566655553 22 33455577888877777766543
No 260
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=29.17 E-value=3e+02 Score=25.30 Aligned_cols=61 Identities=18% Similarity=-0.001 Sum_probs=34.4
Q ss_pred hhcCCcEEEEecCCCCC---CHHHHHHHHHHHHHcCC-CeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 313 KAYGANVVVAVNMFATD---SKAELNAVRNAAMAAGA-FDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 313 ~~fGvPvVVAINrF~tD---T~~Ei~~v~~~c~~~Gv-~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
...+.|+||++|+.... +.+|++...+... .+. ..+.+-+.=++=|+|-.+|=+.+++.+.
T Consensus 106 ~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 106 ENQGVPVLVLANKQDLPNALSVSEVEKLLALHE-LSASTPWHVQPACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred hcCCCcEEEEEECcCccccCCHHHHHHHhCccc-cCCCCceEEEEeecccCCCHHHHHHHHHHHHH
Confidence 34689999999996432 3344443332211 111 0122334567778888777776665553
No 261
>PF11720 Inhibitor_I78: Peptidase inhibitor I78 family; InterPro: IPR021719 This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.
Probab=29.08 E-value=51 Score=26.39 Aligned_cols=28 Identities=29% Similarity=0.409 Sum_probs=23.6
Q ss_pred ecCccccCCCCCCCCceeeeeeeCCCCeEeec
Q 010734 470 LVGTMSTMPGLPTRPCFYEIDVDTATGKVVGL 501 (502)
Q Consensus 470 ~~G~I~tMPGLpk~Paa~~Idid~~~G~I~GL 501 (502)
=-|+++||- -+|.=.+|.+| ++|.|+-+
T Consensus 30 ~Pg~~vTmD---yr~dRLnv~~D-~~g~I~~v 57 (60)
T PF11720_consen 30 RPGDAVTMD---YRPDRLNVEVD-DDGVITRV 57 (60)
T ss_pred CCCCcCccc---CCCCcEEEEEC-CCCcEEEE
Confidence 368999997 66778999999 89999864
No 262
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=28.94 E-value=4.5e+02 Score=24.01 Aligned_cols=44 Identities=18% Similarity=0.121 Sum_probs=28.6
Q ss_pred hhHHHHHHHHhhcCCcEEEEecCCCCCC-------HHHHHHHHHHHHHcCCC
Q 010734 303 VNLARHIANTKAYGANVVVAVNMFATDS-------KAELNAVRNAAMAAGAF 347 (502)
Q Consensus 303 ~NL~kHIeNi~~fGvPvVVAINrF~tDT-------~~Ei~~v~~~c~~~Gv~ 347 (502)
.||+..++.++.-|.+||+. --.+... .+-.+.+++.|++.++.
T Consensus 95 ~~l~~lv~~~~~~~~~vili-~~pp~~~~~~~~~~~~~~~~~~~~a~~~~~~ 145 (200)
T cd01829 95 QRIDELLNVARAKGVPVIWV-GLPAMRSPKLSADMVYLNSLYREEVAKAGGE 145 (200)
T ss_pred HHHHHHHHHHHhCCCcEEEE-cCCCCCChhHhHHHHHHHHHHHHHHHHcCCE
Confidence 57777788888788886654 3233322 23445667788888875
No 263
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=28.91 E-value=1.5e+02 Score=26.62 Aligned_cols=53 Identities=15% Similarity=0.056 Sum_probs=30.1
Q ss_pred cCCcEEEEecCCCCC---CHHHHHHHHHHH--HHcCCCeEEEcCccccCccchhHHHHHHH
Q 010734 315 YGANVVVAVNMFATD---SKAELNAVRNAA--MAAGAFDAVVCSHHAHGGKGAVDLGIAVQ 370 (502)
Q Consensus 315 fGvPvVVAINrF~tD---T~~Ei~~v~~~c--~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv 370 (502)
.+.|++|++|+-.-. +.+|++...+.. ...++ .+-+.=++-|+|-.+|-+.++
T Consensus 114 ~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 114 AGATLLILANKQDLPGALSEEEIREALELDKISSHHW---RIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred cCCCEEEEEECcccccCCCHHHHHHHhCccccCCCce---EEEeccCCCCcCHHHHHHHHh
Confidence 689999999996532 344443322211 11233 233444567788877766553
No 264
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=28.85 E-value=76 Score=33.38 Aligned_cols=121 Identities=22% Similarity=0.264 Sum_probs=65.3
Q ss_pred cchhHHHHhhhccCcCcceeecCceeEEcccccchhcccCchHHHHHHHHHhcCCCCeEEeeccccccccchhccccccc
Q 010734 174 VGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCR 253 (502)
Q Consensus 174 ~~GAm~~lLkdAi~PNLvQTlEgtPa~vHgGPFANIAhG~nSviAtk~alkla~~~dyvVTEAGFgaDlGaEKF~dIkcr 253 (502)
++||+-.+.+++=+++=+-=+||+=.+.|-+.-. --++|=
T Consensus 171 vaGavE~~v~~~~~~~d~ivVEGQgsL~hPay~g-----------vsl~lL----------------------------- 210 (301)
T PF07755_consen 171 VAGAVEALVPEAAEEHDWIVVEGQGSLSHPAYSG-----------VSLGLL----------------------------- 210 (301)
T ss_dssp HHHHHHHHHHHHCCC-SEEEEE--S-TTSTTTHH-----------CHHHHH-----------------------------
T ss_pred HHHHHHHHHHhhCcCCCEEEEeccccccCccccc-----------cchhhh-----------------------------
Confidence 6899999999998888888899998888854322 011221
Q ss_pred cCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcE----EE--EecCCC
Q 010734 254 YSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANV----VV--AVNMFA 327 (502)
Q Consensus 254 ~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPv----VV--AINrF~ 327 (502)
.|-+||++||+-- ..-|+.-|.+. -|+ .-|++.|+-+..+.-.. || ++|...
T Consensus 211 -~Gs~Pd~lVL~H~-p~r~~~~~~p~----~~i----------------p~l~~~I~l~e~la~~~~~~~VvgIslNt~~ 268 (301)
T PF07755_consen 211 -HGSQPDALVLCHA-PGRKHRDGFPH----YPI----------------PPLEEEIELIEALAGTKPPAKVVGISLNTSG 268 (301)
T ss_dssp -HHH--SEEEEEEE-TT-SC-TTSTT----SC-------------------HHHHHHHHHHCCCGC---EEEEEECC-TT
T ss_pred -ccCCCCeEEEEec-CCcccccCCCc----CCC----------------CCHHHHHHHHHHhhccCCCccEEEEEEECCC
Confidence 2334999888643 33344444432 122 35677788888876654 55 488877
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEEcCccccCc
Q 010734 328 TDSKAELNAVRNAAMAAGAFDAVVCSHHAHGG 359 (502)
Q Consensus 328 tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGG 359 (502)
-+.+|=.+.++++-++.|.+ +++....|-
T Consensus 269 l~~~e~~~~~~~~~~e~glP---v~Dp~r~g~ 297 (301)
T PF07755_consen 269 LSEEEAKAAIERIEEELGLP---VTDPLRFGA 297 (301)
T ss_dssp S-HHHHHHHHHHHHHHH-S----EE-HHHH-S
T ss_pred CCHHHHHHHHHHHHHHHCCC---eeecccCCc
Confidence 76544455566666778996 456555543
No 265
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=28.72 E-value=3.8e+02 Score=29.18 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHcCCCeEEE
Q 010734 331 KAELNAVRNAAMAAGAFDAVV 351 (502)
Q Consensus 331 ~~Ei~~v~~~c~~~Gv~~~~v 351 (502)
++|++.+++.|++.|+....+
T Consensus 37 ~~e~~~a~~~a~~lGi~~~~v 57 (394)
T TIGR00032 37 EEDIDAIPEKALEYGAENHYT 57 (394)
T ss_pred hHHHHHHHHHHHHhCCCeEEE
Confidence 789999999999999832433
No 266
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=28.65 E-value=3e+02 Score=25.40 Aligned_cols=52 Identities=23% Similarity=0.182 Sum_probs=32.1
Q ss_pred ccHHHHHHHHhhHHHHHHHHhhcCCcEEEE----ecCCCC------CCHHHHHHHHHHHHHcCCC
Q 010734 293 ENVALVEAGCVNLARHIANTKAYGANVVVA----VNMFAT------DSKAELNAVRNAAMAAGAF 347 (502)
Q Consensus 293 eNl~AL~~G~~NL~kHIeNi~~fGvPvVVA----INrF~t------DT~~Ei~~v~~~c~~~Gv~ 347 (502)
+.++..++.+. +=|+.+++.|.++|+. .+.|.. +..+=-+.+++.|++.|+.
T Consensus 87 ~~~~~~~~nl~---~ii~~~~~~~~~~il~tp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 148 (198)
T cd01821 87 EPYTTYKEYLR---RYIAEARAKGATPILVTPVTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVP 148 (198)
T ss_pred CcHHHHHHHHH---HHHHHHHHCCCeEEEECCccccccCCCCcccccchhHHHHHHHHHHHhCCC
Confidence 34566665444 4455666778887775 223332 2233356788999999996
No 267
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=28.52 E-value=78 Score=34.05 Aligned_cols=22 Identities=9% Similarity=0.208 Sum_probs=17.8
Q ss_pred eeecCceeEEcccccchhcccCchHHHH
Q 010734 192 QTLEGTPVLVHAGPFANIAHGNSSIVAD 219 (502)
Q Consensus 192 QTlEgtPa~vHgGPFANIAhG~nSviAt 219 (502)
+-+++.-.+||| .|||.+-+..
T Consensus 31 ~~I~d~~~lvhG------p~gCa~~~~~ 52 (427)
T PRK02842 31 RKIQDAFFLVVG------SRTCAHLLQS 52 (427)
T ss_pred ceeccceEEEec------CCcchhhhhh
Confidence 567888899999 8999977544
No 268
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=28.48 E-value=2.6e+02 Score=23.76 Aligned_cols=61 Identities=13% Similarity=0.121 Sum_probs=33.2
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHH-----cCCCeEEEcCccccCccchhHHHHHHHH
Q 010734 309 IANTKAYGANVVVAVNMFATDSKAELNAVRNAAMA-----AGAFDAVVCSHHAHGGKGAVDLGIAVQR 371 (502)
Q Consensus 309 IeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~-----~Gv~~~~vs~~wakGGeGa~eLA~~Vv~ 371 (502)
++.++.++.|+++++|+...-++++........+. .+..++. ..=++-|+|-.++-+.+.+
T Consensus 103 ~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~Sa~~~~~~~~l~~~l~~ 168 (170)
T cd01876 103 LDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII--LFSSLKGQGIDELRALIEK 168 (170)
T ss_pred HHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE--EEecCCCCCHHHHHHHHHH
Confidence 44556678999999999766556665544433321 2221222 2223556666665555443
No 269
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=28.48 E-value=2.1e+02 Score=25.67 Aligned_cols=59 Identities=14% Similarity=0.035 Sum_probs=39.4
Q ss_pred hcCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 314 AYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 314 ~fGvPvVVAINrF~tDT~~E--i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
..++|+|+++|+.....+.+ .+.+.+++++.+.. +..+. ++=|+|-.++-+.+.+.+..
T Consensus 104 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gv~~l~~~l~~~~~~ 164 (180)
T cd04137 104 KESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAA-FLESS--ARENENVEEAFELLIEEIEK 164 (180)
T ss_pred CCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCe-EEEEe--CCCCCCHHHHHHHHHHHHHH
Confidence 46899999999977553322 22345667777764 44433 34577888888888877764
No 270
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=28.40 E-value=2.4e+02 Score=31.06 Aligned_cols=64 Identities=20% Similarity=0.144 Sum_probs=50.3
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 010734 304 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 371 (502)
Q Consensus 304 NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~ 371 (502)
|+..-++-.-+|++|+|+ ++.-.-+++.-+...|+++|+.+.++--+=.-||+|-.+--+.++.
T Consensus 193 n~~e~~klav~y~vplvl----~a~~dl~~lk~la~~~~~~Gi~divLdPgT~p~~egl~~T~d~~v~ 256 (467)
T COG1456 193 NWKEFAKLAVEYKVPLVL----SAFNDLDDLKNLAVTYAQAGIKDIVLDPGTYPGGEGLKDTFDNFVM 256 (467)
T ss_pred cHHHHHHHHhhcCCcEEE----eccCCHHHHHHHHHHHHHcCCceEEecCCcccCccchhHHHHHHHH
Confidence 555566667789999998 3434567888888889999999999999999999998876555543
No 271
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=28.26 E-value=2.6e+02 Score=31.59 Aligned_cols=79 Identities=13% Similarity=0.116 Sum_probs=48.0
Q ss_pred HhhHHHHHHHHhh-cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCc
Q 010734 302 CVNLARHIANTKA-YGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPL 380 (502)
Q Consensus 302 ~~NL~kHIeNi~~-fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~f 380 (502)
|.|.-.-++.+.. |++++.. |.-++++|+....+.+++.|+. +++++. =+.++|++. .-+-
T Consensus 115 ~~~~~~~~~~~~~~l~~~i~~----~~~~~~~e~~~~v~~lk~~G~~-~vvG~~------~~~~~A~~~-------g~~g 176 (538)
T PRK15424 115 YQETIPALVAFQKTFNLRIEQ----RSYVTEEDARGQINELKANGIE-AVVGAG------LITDLAEEA-------GMTG 176 (538)
T ss_pred cCcccHHHHHHHHHhCCceEE----EEecCHHHHHHHHHHHHHCCCC-EEEcCc------hHHHHHHHh-------CCce
Confidence 3344444444444 6776544 6678899999999999999995 887643 223444331 1223
Q ss_pred cccCCCCCCHHHHHHHHHH
Q 010734 381 KFLYPLDVSIKEKIDTIAR 399 (502)
Q Consensus 381 k~LY~~~~sI~eKIe~IA~ 399 (502)
-++|+. ++|.+-|+.-.+
T Consensus 177 ~~~~s~-e~i~~a~~~A~~ 194 (538)
T PRK15424 177 IFIYSA-ATVRQAFEDALD 194 (538)
T ss_pred EEecCH-HHHHHHHHHHHH
Confidence 466754 577666665443
No 272
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=28.21 E-value=2.2e+02 Score=29.29 Aligned_cols=110 Identities=21% Similarity=0.241 Sum_probs=68.0
Q ss_pred ccccchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcE
Q 010734 240 ADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANV 319 (502)
Q Consensus 240 aDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPv 319 (502)
.|+|-.|=--.+-|...+.|++-|.+.. +.+..+|++.+-. . +.-+
T Consensus 79 ~~vG~~Kve~~~~rl~~INP~~~V~~i~--------------------~~i~~e~~~~ll~------------~--~~D~ 124 (268)
T PRK15116 79 DNVGLAKAEVMAERIRQINPECRVTVVD--------------------DFITPDNVAEYMS------------A--GFSY 124 (268)
T ss_pred hhcChHHHHHHHHHHHhHCCCcEEEEEe--------------------cccChhhHHHHhc------------C--CCCE
Confidence 4566666666677888889998765321 1123455544311 1 2334
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCcc--ccCCC-CCCHHHHHHH
Q 010734 320 VVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLK--FLYPL-DVSIKEKIDT 396 (502)
Q Consensus 320 VVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk--~LY~~-~~sI~eKIe~ 396 (502)
||. ..|+......+.++|.+.+++ ++.+ ||.|+. + .|..++ -+|.. .+||-.|+++
T Consensus 125 VId----aiD~~~~k~~L~~~c~~~~ip-~I~~-----gGag~k---------~--dp~~~~~~di~~t~~~pla~~~R~ 183 (268)
T PRK15116 125 VID----AIDSVRPKAALIAYCRRNKIP-LVTT-----GGAGGQ---------I--DPTQIQVVDLAKTIQDPLAAKLRE 183 (268)
T ss_pred EEE----cCCCHHHHHHHHHHHHHcCCC-EEEE-----CCcccC---------C--CCCeEEEEeeecccCChHHHHHHH
Confidence 442 457766677889999999996 6544 777752 1 244433 45543 4799999999
Q ss_pred HHH-HhCCC
Q 010734 397 IAR-SYGAS 404 (502)
Q Consensus 397 IA~-IYGA~ 404 (502)
-.+ -||-.
T Consensus 184 ~lr~~~~~~ 192 (268)
T PRK15116 184 RLKSDFGVV 192 (268)
T ss_pred HHHHhhCCC
Confidence 888 67764
No 273
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=28.09 E-value=3.3e+02 Score=28.74 Aligned_cols=88 Identities=25% Similarity=0.329 Sum_probs=56.7
Q ss_pred eecCceeEEcccccchhcccCchHHHHHHH--HHhcCCCCeEEeeccccccccchhccccccccCCCCCCeEEEEeeehh
Q 010734 193 TLEGTPVLVHAGPFANIAHGNSSIVADKIA--LKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRA 270 (502)
Q Consensus 193 TlEgtPa~vHgGPFANIAhG~nSviAtk~a--lkla~~~dyvVTEAGFgaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRA 270 (502)
|++|.|++|-+--|.-.+=.-+++-.-|+. +++| +++|.-|+..-.|.++.|
T Consensus 64 ~I~Gr~v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A-----------------------~~~~~~~~~~PvV~l~dS--- 117 (301)
T PRK07189 64 TLDGRPVVVAAQEGRFMGGSVGEVHGAKLAGALELA-----------------------AEDNRNGIPTAVLLLFET--- 117 (301)
T ss_pred EECCEEEEEEEECCCccCcCcCHHHHHHHHHHHHHH-----------------------HHhCCCCCCCCEEEEecC---
Confidence 688888888877777666556666666663 4444 356655665555666655
Q ss_pred hhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEec
Q 010734 271 LKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVN 324 (502)
Q Consensus 271 LK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAIN 324 (502)
||+- + +|....| .++....+.+..++.. ||+|.+|-
T Consensus 118 ----GGaR-----------l-qEg~~~L-~~~a~i~~~~~~ls~~-VP~I~vv~ 153 (301)
T PRK07189 118 ----GGVR-----------L-QEANAGL-AAIAEIMRAIVDLRAA-VPVIGLIG 153 (301)
T ss_pred ----CCcC-----------c-cchHHHH-HHHHHHHHHHHHHhCC-CCEEEEEc
Confidence 4542 1 2333444 3556777777788888 99998873
No 274
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=28.03 E-value=2.2e+02 Score=25.96 Aligned_cols=69 Identities=13% Similarity=-0.008 Sum_probs=38.0
Q ss_pred HhhHHHHHHHHhh---cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhH----HHHHHHHH
Q 010734 302 CVNLARHIANTKA---YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVD----LGIAVQRA 372 (502)
Q Consensus 302 ~~NL~kHIeNi~~---fGvPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~e----LA~~Vv~a 372 (502)
|.++...++.+++ ...|+||+.|+..-..+. +.+..+++++..|+. +..+. ++=|+|-.+ |++.+++.
T Consensus 88 ~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~evS--a~~~~~i~~~f~~l~~~~~~~ 164 (188)
T cd04125 88 FENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIP-FFETS--AKQSINVEEAFILLVKLIIKR 164 (188)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCe-EEEEe--CCCCCCHHHHHHHHHHHHHHH
Confidence 3444444444443 468999999996532222 223445677777874 43333 344577754 45555444
Q ss_pred h
Q 010734 373 C 373 (502)
Q Consensus 373 ~ 373 (502)
.
T Consensus 165 ~ 165 (188)
T cd04125 165 L 165 (188)
T ss_pred h
Confidence 3
No 275
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=27.98 E-value=1.5e+02 Score=31.16 Aligned_cols=79 Identities=19% Similarity=0.157 Sum_probs=57.8
Q ss_pred eehhhhhcCCCCCccCCCCCchhcccccHHHHHHH--HhhHHHHHHHHhhcCCc-EEE-EecCCCCCCHHHHHHHHHHHH
Q 010734 267 TIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAG--CVNLARHIANTKAYGAN-VVV-AVNMFATDSKAELNAVRNAAM 342 (502)
Q Consensus 267 TvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G--~~NL~kHIeNi~~fGvP-vVV-AINrF~tDT~~Ei~~v~~~c~ 342 (502)
-+++||-. |+....+| .+..+++-++.+.++ .....+-++.+++.|++ +.+ -|=-+|..|.+++..-.+++.
T Consensus 110 ~l~~l~~~-G~~rvslG---vQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt~~~~~~tl~~~~ 185 (375)
T PRK05628 110 FFAALRAA-GFTRVSLG---MQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGESDDDWRASLDAAL 185 (375)
T ss_pred HHHHHHHc-CCCEEEEe---cccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 35677765 67777777 366667777777775 45667778889999988 422 233469999999999999999
Q ss_pred HcCCCeE
Q 010734 343 AAGAFDA 349 (502)
Q Consensus 343 ~~Gv~~~ 349 (502)
+.|...+
T Consensus 186 ~l~~~~i 192 (375)
T PRK05628 186 EAGVDHV 192 (375)
T ss_pred hcCCCEE
Confidence 9998643
No 276
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=27.62 E-value=2.1e+02 Score=23.22 Aligned_cols=61 Identities=11% Similarity=0.055 Sum_probs=34.4
Q ss_pred HHHHHHHhhcCCcEEEEecCCCCCCHHHHHHH---HHHHHHcCCCeEEEcCccccCccchhHHHHHH
Q 010734 306 ARHIANTKAYGANVVVAVNMFATDSKAELNAV---RNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAV 369 (502)
Q Consensus 306 ~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v---~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~V 369 (502)
.+........++|++|++|+-.....++.+.. .......+.. +..+.. .-|+|-.++-+.+
T Consensus 92 ~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~--~~~~~i~~~~~~l 155 (157)
T cd00882 92 LLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVP-YFETSA--KTGENVEELFEEL 155 (157)
T ss_pred HHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCc-EEEEec--CCCCChHHHHHHH
Confidence 34555667799999999998655444443332 3333444553 444433 3455655555443
No 277
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=27.37 E-value=2e+02 Score=30.70 Aligned_cols=77 Identities=9% Similarity=0.101 Sum_probs=54.4
Q ss_pred hcccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEec---CCCCCCHHHH------HHHHHHHHHcCCCeEEEcCccccCc
Q 010734 289 AYLNENVALVEAGCVNLARHIANTKAYGANVVVAVN---MFATDSKAEL------NAVRNAAMAAGAFDAVVCSHHAHGG 359 (502)
Q Consensus 289 ~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAIN---rF~tDT~~Ei------~~v~~~c~~~Gv~~~~vs~~wakGG 359 (502)
....++.+..+|.+ |-.+-..+||+|+|--|+ .||.=..||. +.=...|..+.++ ++|.+-.+||
T Consensus 127 NFGm~~PeGyRKAl----Rlm~~AekF~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvP--iI~iVIGEGg 200 (317)
T COG0825 127 NFGMPRPEGYRKAL----RLMKLAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVP--IISIVIGEGG 200 (317)
T ss_pred cCCCCCchHHHHHH----HHHHHHHHhCCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCCC--EEEEEecCCC
Confidence 45566677777765 445667789999999999 4999888874 3223345557774 7999999999
Q ss_pred cch---hHHHHHHHH
Q 010734 360 KGA---VDLGIAVQR 371 (502)
Q Consensus 360 eGa---~eLA~~Vv~ 371 (502)
-|+ +..|+.|.-
T Consensus 201 SGGALAi~vad~V~m 215 (317)
T COG0825 201 SGGALAIGVADRVLM 215 (317)
T ss_pred chhhHHhhHHHHHHH
Confidence 986 334555543
No 278
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=27.36 E-value=2.1e+02 Score=27.30 Aligned_cols=124 Identities=13% Similarity=0.144 Sum_probs=66.4
Q ss_pred CCCeEEeeccccccccchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHH
Q 010734 228 PGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLAR 307 (502)
Q Consensus 228 ~~dyvVTEAGFgaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~k 307 (502)
..||||-..+-|.+.-....+ ..-|.+|+|++.-. .++ .++.+
T Consensus 108 ~yD~VIiD~p~~~~~~~~~~l--------~~ad~vliv~~~~~-------------------------~s~----~~~~~ 150 (251)
T TIGR01969 108 DTDFLLIDAPAGLERDAVTAL--------AAADELLLVVNPEI-------------------------SSI----TDALK 150 (251)
T ss_pred hCCEEEEeCCCccCHHHHHHH--------HhCCeEEEEECCCC-------------------------chH----HHHHH
Confidence 349999999877654222222 12467777776210 011 23344
Q ss_pred HHHHHhhcCCcE-EEEecCCCCCCH-HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCC
Q 010734 308 HIANTKAYGANV-VVAVNMFATDSK-AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYP 385 (502)
Q Consensus 308 HIeNi~~fGvPv-VVAINrF~tDT~-~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~ 385 (502)
.++..+.++++. .|.+|++..... .-.+.+. +..|.. +. .... .-..+.++...+ ..+ ..|.
T Consensus 151 ~~~~~~~~~~~~~~vv~N~~~~~~~~~~~~~l~---~~~~~~-~l-~~Ip---------~~~~~~~a~~~g-~~v-~~~~ 214 (251)
T TIGR01969 151 TKIVAEKLGTAILGVVLNRVTRDKTELGREEIE---TILEVP-VL-GVVP---------EDPEVRRAAAFG-EPV-VIYN 214 (251)
T ss_pred HHHHHHhcCCceEEEEEECCCchhhhhHHHHHH---HhhCCc-EE-EEec---------CCHhHHHHHHcC-Cce-EEeC
Confidence 456666778885 589999976432 1122222 224553 32 2222 223444554432 212 2355
Q ss_pred CCCCHHHHHHHHHH-HhCCC
Q 010734 386 LDVSIKEKIDTIAR-SYGAS 404 (502)
Q Consensus 386 ~~~sI~eKIe~IA~-IYGA~ 404 (502)
.+.+..+-++.+|+ +-+..
T Consensus 215 ~~~~~~~~~~~la~~i~~~~ 234 (251)
T TIGR01969 215 PNSPAAQAFMELAAELAGIE 234 (251)
T ss_pred CCCHHHHHHHHHHHHHHhcc
Confidence 56678888999998 76654
No 279
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=27.36 E-value=81 Score=32.38 Aligned_cols=84 Identities=26% Similarity=0.321 Sum_probs=53.9
Q ss_pred cccCchHHHHHHHHHhcCCCCeEEeeccccccccchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchh
Q 010734 210 AHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHA 289 (502)
Q Consensus 210 AhG~nSviAtk~alkla~~~dyvVTEAGFgaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~ 289 (502)
-||+.+=.++--|+- |+|.+|-||+. |.||++. |-|
T Consensus 144 gHGt~h~s~~~YacL-----d~~~~~~~f~~----------------------v~v~~ve------~yP----------- 179 (265)
T COG4822 144 GHGTDHHSNAAYACL-----DHVLDEYGFDN----------------------VFVAAVE------GYP----------- 179 (265)
T ss_pred ecCCCccHHHHHHHH-----HHHHHhcCCCc----------------------eEEEEec------CCC-----------
Confidence 388877766665553 99999999986 4455544 222
Q ss_pred cccccHHHHHHHHhhHHHHHHHHhhcCCcE-------EE----EecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccC
Q 010734 290 YLNENVALVEAGCVNLARHIANTKAYGANV-------VV----AVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHG 358 (502)
Q Consensus 290 l~~eNl~AL~~G~~NL~kHIeNi~~fGvPv-------VV----AINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakG 358 (502)
-+..-|+.+++-|+.= +| |.|-..+|+++++..+. +++|.. + ++|..|
T Consensus 180 --------------~~d~vi~~l~~~~~~~v~L~PlMlvAG~Ha~nDMasddedswk~il---~~~G~~-v---~~~l~G 238 (265)
T COG4822 180 --------------LVDTVIEYLRKNGIKEVHLIPLMLVAGDHAKNDMASDDEDSWKNIL---EKNGFK-V---EVYLHG 238 (265)
T ss_pred --------------cHHHHHHHHHHcCCceEEEeeeEEeechhhhhhhcccchHHHHHHH---HhCCce-e---EEEeec
Confidence 1222255566655542 23 46778889888887655 458884 4 788876
No 280
>PRK05660 HemN family oxidoreductase; Provisional
Probab=27.31 E-value=2.2e+02 Score=30.11 Aligned_cols=79 Identities=11% Similarity=0.044 Sum_probs=58.8
Q ss_pred eehhhhhcCCCCCccCCCCCchhcccccHHHHHHH--HhhHHHHHHHHhhcCCcE--EEEecCCCCCCHHHHHHHHHHHH
Q 010734 267 TIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAG--CVNLARHIANTKAYGANV--VVAVNMFATDSKAELNAVRNAAM 342 (502)
Q Consensus 267 TvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G--~~NL~kHIeNi~~fGvPv--VVAINrF~tDT~~Ei~~v~~~c~ 342 (502)
.++.||-. |+....+| .+....+-++.+.++ .+...+.|+.+++.|++. |-.|--+|..|.+++..-.+.+.
T Consensus 109 ~l~~Lk~~-Gv~risiG---vqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt~~~~~~~l~~~~ 184 (378)
T PRK05660 109 RFVGYQRA-GVNRISIG---VQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQSLEEALDDLRQAI 184 (378)
T ss_pred HHHHHHHc-CCCEEEec---cCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHH
Confidence 35677776 46666666 355666667777665 566777889999999864 34566789999999999999999
Q ss_pred HcCCCeE
Q 010734 343 AAGAFDA 349 (502)
Q Consensus 343 ~~Gv~~~ 349 (502)
+.|+..+
T Consensus 185 ~l~p~~i 191 (378)
T PRK05660 185 ALNPPHL 191 (378)
T ss_pred hcCCCeE
Confidence 9998643
No 281
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=27.13 E-value=6e+02 Score=26.60 Aligned_cols=70 Identities=14% Similarity=0.089 Sum_probs=32.4
Q ss_pred CCCCCccCCCCCchhcccccHHHHHHH--HhhHHHHHHHHhhcCCcEE--EEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010734 275 GGGPQVVAGKPLDHAYLNENVALVEAG--CVNLARHIANTKAYGANVV--VAVNMFATDSKAELNAVRNAAMAAGAF 347 (502)
Q Consensus 275 GG~~~~~~~~pl~~~l~~eNl~AL~~G--~~NL~kHIeNi~~fGvPvV--VAINrF~tDT~~Ei~~v~~~c~~~Gv~ 347 (502)
.|+....+| .+.+..+-+..+.++ .+...+-|+.++++|++.| =.|=-+|..|.+++..-.+++.+.++.
T Consensus 107 ~GvnRiSiG---vQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~~~~l~~~ 180 (350)
T PRK08446 107 LGVNRISFG---VQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKLAKELPIN 180 (350)
T ss_pred cCCCEEEEe---cccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHHHHHHHHhcCCC
Confidence 344444444 244444444444432 3444445555555555422 122234555555555555555555543
No 282
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=27.02 E-value=1.5e+02 Score=27.64 Aligned_cols=87 Identities=14% Similarity=0.156 Sum_probs=50.2
Q ss_pred cCC-cEEEEecC-CCCCCHHHHHHHHHHHHHcCCCeEEEcCcc-ccCccchhHHHHHHH-----HHhhcCCCCccccCCC
Q 010734 315 YGA-NVVVAVNM-FATDSKAELNAVRNAAMAAGAFDAVVCSHH-AHGGKGAVDLGIAVQ-----RACENVTQPLKFLYPL 386 (502)
Q Consensus 315 fGv-PvVVAINr-F~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~w-akGGeGa~eLA~~Vv-----~a~e~~~~~fk~LY~~ 386 (502)
++. -.+|.||+ +..++.+|.+.++++|++.|+.-.+..--| .+.+.+..+.|+..- +.+.+ ..+..+- .
T Consensus 26 ~~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~--~g~~~i~-~ 102 (182)
T PF01171_consen 26 NGIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVRIDEDRKKGSNIEECARELRYQFLREIAKE--EGCNKIA-L 102 (182)
T ss_dssp TTTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHT--TT-CEEE--
T ss_pred cCCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhc--cccccee-e
Confidence 443 45677885 677889999999999999999644333333 234666667776432 23322 3344443 4
Q ss_pred CCCHHHHHHHHHH--HhCCC
Q 010734 387 DVSIKEKIDTIAR--SYGAS 404 (502)
Q Consensus 387 ~~sI~eKIe~IA~--IYGA~ 404 (502)
.....|-+|++-. .+|..
T Consensus 103 GHh~dD~~ET~l~~l~rg~~ 122 (182)
T PF01171_consen 103 GHHLDDQAETFLMNLLRGSG 122 (182)
T ss_dssp --BHHHHHHHHHHHHHHT--
T ss_pred cCcCCccHHHHHHHHHHhcc
Confidence 6678888888876 55543
No 283
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=26.94 E-value=5e+02 Score=26.13 Aligned_cols=36 Identities=11% Similarity=0.103 Sum_probs=18.2
Q ss_pred HhhcCCcEEEEec----CC-CCCCHHHHHHHHHHHHHcCCC
Q 010734 312 TKAYGANVVVAVN----MF-ATDSKAELNAVRNAAMAAGAF 347 (502)
Q Consensus 312 i~~fGvPvVVAIN----rF-~tDT~~Ei~~v~~~c~~~Gv~ 347 (502)
.++||+|++|-.- ++ ...+++++....+.|.+.|+.
T Consensus 135 ~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD 175 (267)
T PRK07226 135 CEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGAD 175 (267)
T ss_pred HHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCC
Confidence 3456777666210 01 112445666655666667774
No 284
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=26.89 E-value=3.4e+02 Score=28.48 Aligned_cols=39 Identities=23% Similarity=0.347 Sum_probs=24.0
Q ss_pred HHHHHHHHhcC--CCCeEEeeccccccccchhccccccccCCCCCCeEEE
Q 010734 217 VADKIALKLVG--PGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVI 264 (502)
Q Consensus 217 iAtk~alkla~--~~dyvVTEAGFgaDlGaEKF~dIkcr~~gl~P~a~Vl 264 (502)
+.|-+|+.+.. .-||+|=|+|-|--+-+ ..=+.|+++|+
T Consensus 97 ~~t~~A~~~f~~~~~d~~VlEvGlggrld~---------tn~i~p~vaVi 137 (397)
T TIGR01499 97 LLTLLAFLYFAQAQVDVAVLEVGLGGRLDA---------TNVIEPLVSVI 137 (397)
T ss_pred HHHHHHHHHHHHCCCCEEEEeecCCCCccc---------ccccCCCeEEE
Confidence 56667766653 34999999995433322 12234887766
No 285
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=26.88 E-value=2.8e+02 Score=28.85 Aligned_cols=63 Identities=25% Similarity=0.154 Sum_probs=40.6
Q ss_pred HHHHHHhhcCCcEEEEecCC--CCC--------CHHHH------------------HHHHHHHHHcCCCeE-EEcCcccc
Q 010734 307 RHIANTKAYGANVVVAVNMF--ATD--------SKAEL------------------NAVRNAAMAAGAFDA-VVCSHHAH 357 (502)
Q Consensus 307 kHIeNi~~fGvPvVVAINrF--~tD--------T~~Ei------------------~~v~~~c~~~Gv~~~-~vs~~wak 357 (502)
-|++|+..||-++|..+|-= ... |-+|+ ..+.+.|.+.|++.+ +++..|+.
T Consensus 21 ~~~~~~~~~g~~~v~~V~p~~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vpa~~v~~~l~e~~~~Gvk~avIis~Gf~e 100 (286)
T TIGR01019 21 FHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFDSVKEAVEETGANASVIFVPAPFAADAIFEAIDAGIELIVCITEGIPV 100 (286)
T ss_pred HHHHHHHhCCCCEEEEECCCCCcceecCeeccCCHHHHhhccCCCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCH
Confidence 68999999999988889943 321 22222 334466778998754 34566633
Q ss_pred CccchhHHHHHHHHHhhc
Q 010734 358 GGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 358 GGeGa~eLA~~Vv~a~e~ 375 (502)
.+.+++++.+.+
T Consensus 101 ------~~~~~l~~~a~~ 112 (286)
T TIGR01019 101 ------HDMLKVKRYMEE 112 (286)
T ss_pred ------HHHHHHHHHHHH
Confidence 255677777764
No 286
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=26.77 E-value=3e+02 Score=29.39 Aligned_cols=81 Identities=17% Similarity=0.334 Sum_probs=52.1
Q ss_pred eEEEEeeehh------hhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecC---CCCCCH
Q 010734 261 CAVIVATIRA------LKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNM---FATDSK 331 (502)
Q Consensus 261 a~VlVaTvRA------LK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAINr---F~tDT~ 331 (502)
-|++|++=+. ++.++|... -.|.....|.++...+||+|+|--++- ++.-..
T Consensus 112 pV~VIa~dkg~~~~e~~~~~~G~~~-------------------p~g~rKa~Rlm~lA~~f~lPIItlvDTpGA~~G~~A 172 (322)
T CHL00198 112 TIVFLGHQRGRNTKENVLRNFGMPS-------------------PGGYRKALRLMKHANKFGLPILTFIDTPGAWAGVKA 172 (322)
T ss_pred EEEEEEecCCccchhhhhhcCCCCC-------------------HHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCcCHHH
Confidence 4788888664 345666532 235566678888999999999999994 666554
Q ss_pred HHH---HHHHHHH---HHcCCCeEEEcCccccCccch
Q 010734 332 AEL---NAVRNAA---MAAGAFDAVVCSHHAHGGKGA 362 (502)
Q Consensus 332 ~Ei---~~v~~~c---~~~Gv~~~~vs~~wakGGeGa 362 (502)
||- ..+.+.. ....++ .+|=+-.+||-|+
T Consensus 173 E~~G~~~aiar~l~~~a~~~VP--~IsVViGeggsGG 207 (322)
T CHL00198 173 EKLGQGEAIAVNLREMFSFEVP--IICTIIGEGGSGG 207 (322)
T ss_pred HHHhHHHHHHHHHHHHHcCCCC--EEEEEeCcccHHH
Confidence 442 2343332 234564 5677777776665
No 287
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=26.77 E-value=2.5e+02 Score=26.60 Aligned_cols=56 Identities=16% Similarity=-0.005 Sum_probs=35.9
Q ss_pred CCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 316 GANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 316 GvPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
+.|+|++.|+..-..+. ..+...++++..|...+. .=++=|+|-.+|-+.+++.+.
T Consensus 109 ~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~---iSAktg~gv~~lf~~l~~~l~ 166 (215)
T cd04109 109 QPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCL---VSAKTGDRVNLLFQQLAAELL 166 (215)
T ss_pred CceEEEEEECcccccccccCHHHHHHHHHHcCCEEEE---EECCCCCCHHHHHHHHHHHHH
Confidence 57899999997543221 123455677777874333 335567888888877777654
No 288
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=26.68 E-value=2.1e+02 Score=24.34 Aligned_cols=51 Identities=24% Similarity=0.255 Sum_probs=31.1
Q ss_pred hcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHH
Q 010734 314 AYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 372 (502)
Q Consensus 314 ~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a 372 (502)
.++.|+++++|+-..-+..+. .....+.. +..+. ++=|+|-.+|-+.+.+.
T Consensus 105 ~~~~~vi~v~nK~D~~~~~~~-----~~~~~~~~-~~~~S--a~~~~~v~~l~~~l~~~ 155 (157)
T cd04164 105 PADKPIIVVLNKSDLLPDSEL-----LSLLAGKP-IIAIS--AKTGEGLDELKEALLEL 155 (157)
T ss_pred hcCCCEEEEEEchhcCCcccc-----ccccCCCc-eEEEE--CCCCCCHHHHHHHHHHh
Confidence 678999999999765544443 22223443 33333 45557777777766554
No 289
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=26.58 E-value=6.8e+02 Score=25.37 Aligned_cols=125 Identities=14% Similarity=0.204 Sum_probs=61.1
Q ss_pred HHhhHHHHHHHHhh-cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCcc-chhHHHHHH----HHHhh
Q 010734 301 GCVNLARHIANTKA-YGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGK-GAVDLGIAV----QRACE 374 (502)
Q Consensus 301 G~~NL~kHIeNi~~-fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGe-Ga~eLA~~V----v~a~e 374 (502)
-+..|.+=|+.+++ +++| |+|--|..+ +.+.|.+.|+. .+++.+..-.+ ...+|+++. +-.-.
T Consensus 60 E~~rl~~~v~~i~~~~~~p--lSIDT~~~~-------v~e~al~~G~~--iINdisg~~~~~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 60 ELERVIPVLEALRGELDVL--ISVDTFRAE-------VARAALEAGAD--IINDVSGGSDDPAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred HHHHHHHHHHHHHhcCCCc--EEEeCCCHH-------HHHHHHHhCCC--EEEeCCCCCCChHHHHHHHHcCCCEEEECC
Confidence 34555566666665 4666 566555432 33455566863 57888776543 333333331 00000
Q ss_pred c-CCCC--ccccCCC-----CCCHHHHHHHHHHHhCCC--ceeeCHHH------------HHHHHHHHHCCCCCCCeeEe
Q 010734 375 N-VTQP--LKFLYPL-----DVSIKEKIDTIARSYGAS--GVEYSEEA------------EKQIEMYTGQGFSGLPICMA 432 (502)
Q Consensus 375 ~-~~~~--fk~LY~~-----~~sI~eKIe~IA~IYGA~--~V~fS~~A------------~kqLk~ie~~Gf~~LPVCmA 432 (502)
. .|.. ..+-|++ -..++++|+. |+-||-+ ++.+.|.. .+.+++|.++ ++|+.+.
T Consensus 129 ~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~Gi~~~~Ii~DPg~gf~ks~~~~~~~l~~i~~l~~~---~~pil~G 204 (257)
T cd00739 129 RGTPKTMQENPYYEDVVDEVLSFLEARLEA-AESAGVARNRIILDPGIGFGKTPEHNLELLRRLDELKQL---GLPVLVG 204 (257)
T ss_pred CCCCcccccCCCcccHHHHHHHHHHHHHHH-HHHcCCCHHHEEEecCCCcccCHHHHHHHHHHHHHHHhC---CCcEEEE
Confidence 0 0111 1122321 1123444443 2244533 55544432 5566666666 6699998
Q ss_pred ecCCCCCC
Q 010734 433 KTQYSFSH 440 (502)
Q Consensus 433 KTqySlSd 440 (502)
=.--||-.
T Consensus 205 ~SrkSfig 212 (257)
T cd00739 205 ASRKSFIG 212 (257)
T ss_pred ecccHHHH
Confidence 76666653
No 290
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=26.37 E-value=3.1e+02 Score=25.31 Aligned_cols=57 Identities=12% Similarity=0.042 Sum_probs=34.3
Q ss_pred CCcEEEEecCCCCCCHHHH--------------HHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 316 GANVVVAVNMFATDSKAEL--------------NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 316 GvPvVVAINrF~tDT~~Ei--------------~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
++|+|++.|+-.-..+.+. +...+++++.+...+. +.=++=|+|-.++=+.+++.+-
T Consensus 104 ~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--e~SAk~~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 104 GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYL--ECSAKLNRGVNEAFTEAARVAL 174 (189)
T ss_pred CCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEE--EccCCcCCCHHHHHHHHHHHHh
Confidence 8999999998553322221 2235666666632233 3334567888887777776654
No 291
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=26.36 E-value=4e+02 Score=26.49 Aligned_cols=78 Identities=14% Similarity=0.038 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccch--hHHHHHHHHHhhcCCCCccccCCCCCCHHHHHHHHHHHhC
Q 010734 325 MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGA--VDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARSYG 402 (502)
Q Consensus 325 rF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa--~eLA~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~IYG 402 (502)
.+...+..+...+.+.+++.|+..+.++..=.+|-.++ .++++++.+.. +....+.-.-+=.+.++.+.+..|
T Consensus 148 gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~-----~ipvia~GGi~s~~di~~~~~~g~ 222 (254)
T TIGR00735 148 GGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAV-----KIPVIASGGAGKPEHFYEAFTKGK 222 (254)
T ss_pred CCcccCCCCHHHHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhC-----CCCEEEeCCCCCHHHHHHHHHcCC
Confidence 33455666666777778899997555655444443333 45666666543 233444444333444555554555
Q ss_pred CCcee
Q 010734 403 ASGVE 407 (502)
Q Consensus 403 A~~V~ 407 (502)
+++|.
T Consensus 223 ~dgv~ 227 (254)
T TIGR00735 223 ADAAL 227 (254)
T ss_pred cceee
Confidence 66654
No 292
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=26.35 E-value=1.9e+02 Score=28.45 Aligned_cols=118 Identities=17% Similarity=0.204 Sum_probs=67.0
Q ss_pred HHHHHHHhhHHHH----HHHHhhc--CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHH
Q 010734 296 ALVEAGCVNLARH----IANTKAY--GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAV 369 (502)
Q Consensus 296 ~AL~~G~~NL~kH----IeNi~~f--GvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~V 369 (502)
..++-|.+-+..+ |+.+++. |.|+++=+=-+ |-+ +.+.+.+.++|+. . .++.+.||...+ ++.
T Consensus 30 ~~~kvG~~l~~~~G~~~i~~lk~~~~~~~v~~DLK~~--Di~---~~v~~~~~~~Gad-~--vTvH~~a~~~~i---~~~ 98 (216)
T PRK13306 30 DIIEVGTILLLAEGMKAVRVLRALYPDKIIVADTKIA--DAG---KILAKMAFEAGAD-W--VTVICAAHIPTI---KAA 98 (216)
T ss_pred CEEEEChHHHHHhCHHHHHHHHHHCCCCEEEEEEeec--CCc---HHHHHHHHHCCCC-E--EEEeCCCCHHHH---HHH
Confidence 3456666666666 7778876 77776655544 333 3444447789995 3 345555555432 233
Q ss_pred HHHhhc-C--------CC-Ccccc-CCCCCCHHHHHHHHHHHhCCCceeeCHHHHHHHHHHHHCCC
Q 010734 370 QRACEN-V--------TQ-PLKFL-YPLDVSIKEKIDTIARSYGASGVEYSEEAEKQIEMYTGQGF 424 (502)
Q Consensus 370 v~a~e~-~--------~~-~fk~L-Y~~~~sI~eKIe~IA~IYGA~~V~fS~~A~kqLk~ie~~Gf 424 (502)
++++.+ + ++ +...+ +-.+.++.+-+-..+.-=|.+++.||+...++++++.+.||
T Consensus 99 ~~~~~~~g~~~~V~llts~~~~~l~~~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~~~~ 164 (216)
T PRK13306 99 LKVAKEFNGEIQIELYGNWTWEQAQQWRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSDMGF 164 (216)
T ss_pred HHHHHHcCCEEEEEECCCCCHHHHHHHHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhcCCC
Confidence 333221 1 11 11111 11223455555555552237899999999999999987665
No 293
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=26.33 E-value=1.5e+02 Score=29.38 Aligned_cols=41 Identities=5% Similarity=-0.035 Sum_probs=26.9
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCC---CHHHHHHHHHHHHHcCCC
Q 010734 304 NLARHIANTKAYGANVVVAVNMFATD---SKAELNAVRNAAMAAGAF 347 (502)
Q Consensus 304 NL~kHIeNi~~fGvPvVVAINrF~tD---T~~Ei~~v~~~c~~~Gv~ 347 (502)
..+++++.++++|+|++|++|+..-. -++-++.++ +..|..
T Consensus 104 ~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~---~~~~~~ 147 (237)
T cd04168 104 QTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIK---EKLSSD 147 (237)
T ss_pred HHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHH---HHHCCC
Confidence 34566777788999999999997554 334344443 345654
No 294
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=26.21 E-value=3.2e+02 Score=23.91 Aligned_cols=57 Identities=11% Similarity=0.017 Sum_probs=34.7
Q ss_pred CCcEEEEecCCCCC--CHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 316 GANVVVAVNMFATD--SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 316 GvPvVVAINrF~tD--T~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
++|+++++|+..-- .+...+.+.+++++.|...+.. .=++=|+|-.+|-+.+++.+-
T Consensus 109 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~gv~~l~~~i~~~~~ 167 (172)
T cd01862 109 NFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFE--TSAKEAINVEQAFETIARKAL 167 (172)
T ss_pred CceEEEEEECcccccccccCHHHHHHHHHHcCCceEEE--EECCCCCCHHHHHHHHHHHHH
Confidence 79999999997443 1111344567777777322322 223346777777777776654
No 295
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=26.15 E-value=1.4e+02 Score=33.44 Aligned_cols=25 Identities=8% Similarity=0.146 Sum_probs=19.8
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCC
Q 010734 305 LARHIANTKAYGANVVVAVNMFATD 329 (502)
Q Consensus 305 L~kHIeNi~~fGvPvVVAINrF~tD 329 (502)
.++.++..+++|+|+++++|+..-.
T Consensus 120 t~~l~~~~~~~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 120 TRKLMEVCRLRDTPIFTFINKLDRD 144 (526)
T ss_pred HHHHHHHHHhcCCCEEEEEECCccc
Confidence 4566777788999999999997543
No 296
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=26.00 E-value=2.7e+02 Score=30.53 Aligned_cols=55 Identities=20% Similarity=0.180 Sum_probs=36.6
Q ss_pred cCCcEEEEecCCCC-CCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 315 YGANVVVAVNMFAT-DSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 315 fGvPvVVAINrF~t-DT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
.+.|.||++|+-.- +.++ .+.++++..+.. +..+. +.=|+|-.+|-+.+.+.+.+
T Consensus 273 ~~kP~IVV~NK~DL~~~~e---~l~~l~~~l~~~-i~~iS--A~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 273 LERPQIVVANKMDLPEAEE---NLEEFKEKLGPK-VFPIS--ALTGQGLDELLYAVAELLEE 328 (424)
T ss_pred cCCcEEEEEeCCCCcCCHH---HHHHHHHHhCCc-EEEEe--CCCCCCHHHHHHHHHHHHHh
Confidence 57899999999764 2223 344555556653 33332 45578999999988888765
No 297
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=25.97 E-value=2.1e+02 Score=28.75 Aligned_cols=51 Identities=14% Similarity=0.123 Sum_probs=33.2
Q ss_pred hhHHHHHHHHhhcCCc-EEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCc
Q 010734 303 VNLARHIANTKAYGAN-VVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSH 354 (502)
Q Consensus 303 ~NL~kHIeNi~~fGvP-vVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~ 354 (502)
....+.|+.+++.|++ +-+-.--.+..+++|+..+.+++++.|+. +-..+.
T Consensus 134 ~~vl~~i~~~~~~G~~~v~i~~v~~~g~n~~ei~~~~~~~~~~g~~-~~~ie~ 185 (302)
T TIGR02668 134 DRVIEGIESAVDAGLTPVKLNMVVLKGINDNEIPDMVEFAAEGGAI-LQLIEL 185 (302)
T ss_pred HHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCCE-EEEEEE
Confidence 3444445556666765 43322235667899999999999999984 554443
No 298
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=25.96 E-value=68 Score=38.13 Aligned_cols=54 Identities=35% Similarity=0.504 Sum_probs=40.5
Q ss_pred ccchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcEEE
Q 010734 242 IGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVV 321 (502)
Q Consensus 242 lGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvVV 321 (502)
-|-|.|-|.+.|-+.|. |.+++|.-| |||=-++ -++ -|+++|.-..|.||
T Consensus 548 pghEsFtnlRsrgsslC-~~aIlvvdI----mhGlepq--------------tiE-----------Si~lLR~rktpFiv 597 (1064)
T KOG1144|consen 548 PGHESFTNLRSRGSSLC-DLAILVVDI----MHGLEPQ--------------TIE-----------SINLLRMRKTPFIV 597 (1064)
T ss_pred CCchhhhhhhhcccccc-ceEEEEeeh----hccCCcc--------------hhH-----------HHHHHHhcCCCeEE
Confidence 46899999999999996 666677665 7873221 111 26677889999999
Q ss_pred EecC
Q 010734 322 AVNM 325 (502)
Q Consensus 322 AINr 325 (502)
|+|+
T Consensus 598 ALNK 601 (1064)
T KOG1144|consen 598 ALNK 601 (1064)
T ss_pred eehh
Confidence 9997
No 299
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=25.87 E-value=7e+02 Score=25.19 Aligned_cols=92 Identities=20% Similarity=0.259 Sum_probs=48.9
Q ss_pred hhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcC--CCeEEEc---CccccCcc---chhHHHHHHHHHhhcCCCCccccC
Q 010734 313 KAYGANVVVAVNMFATDSKAELNAVRNAAMAAG--AFDAVVC---SHHAHGGK---GAVDLGIAVQRACENVTQPLKFLY 384 (502)
Q Consensus 313 ~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~G--v~~~~vs---~~wakGGe---Ga~eLA~~Vv~a~e~~~~~fk~LY 384 (502)
+.++.|++|-|+ ..+.+|+....+.+++.+ +..+-++ -+....|+ +-.++..++++.+.+. .++-...
T Consensus 87 ~~~~~pl~~qi~---g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~-~~~pv~v 162 (300)
T TIGR01037 87 EEFPTPLIASVY---GSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDK-TDVPVFA 162 (300)
T ss_pred ccCCCcEEEEee---cCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHh-cCCCEEE
Confidence 348889888885 456788888888887653 5323332 22222232 3456667777776542 1221121
Q ss_pred CCCCCHHHHHHHHHH---HhCCCceeeC
Q 010734 385 PLDVSIKEKIDTIAR---SYGASGVEYS 409 (502)
Q Consensus 385 ~~~~sI~eKIe~IA~---IYGA~~V~fS 409 (502)
....++++ ...+|+ -+|++.++.+
T Consensus 163 Ki~~~~~~-~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 163 KLSPNVTD-ITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred ECCCChhh-HHHHHHHHHHcCCCEEEEE
Confidence 22222332 344444 4778877654
No 300
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=25.81 E-value=1.5e+02 Score=30.65 Aligned_cols=86 Identities=15% Similarity=0.122 Sum_probs=52.3
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCC-----C-CHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHH-HHhhcC
Q 010734 304 NLARHIANTKAYGANVVVAVNMFAT-----D-SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQ-RACENV 376 (502)
Q Consensus 304 NL~kHIeNi~~fGvPvVVAINrF~t-----D-T~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv-~a~e~~ 376 (502)
++++=+++++..|..||+.=|-+.. - .++-.+.+.+....-.+. +++| ..||.|+..|...+= +.+.++
T Consensus 19 ~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~~~~Ra~dL~~a~~Dp~i~-aI~~---~rGG~g~~rlL~~lD~~~i~~~ 94 (308)
T cd07062 19 RLERAKKRLENLGFEVVEGPNALKGDKYLSASPEERAEELMAAFADPSIK-AIIP---TIGGDDSNELLPYLDYELIKKN 94 (308)
T ss_pred HHHHHHHHHHhCCCEEEEecccccccccccCCHHHHHHHHHHHhcCCCCC-EEEE---CCcccCHhhhhhhcCHHHHhhC
Confidence 3444455666789999998886443 2 344456667776667774 7766 689999999887752 333332
Q ss_pred CCCccccCCCCCCHHHHH
Q 010734 377 TQPLKFLYPLDVSIKEKI 394 (502)
Q Consensus 377 ~~~fk~LY~~~~sI~eKI 394 (502)
| ..=.=|.+-..|--=+
T Consensus 95 P-K~fiGySDiTaL~~al 111 (308)
T cd07062 95 P-KIFIGYSDITALHLAI 111 (308)
T ss_pred C-CEEEeccHHHHHHHHH
Confidence 2 1223356544444333
No 301
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.80 E-value=2.1e+02 Score=31.26 Aligned_cols=82 Identities=10% Similarity=0.049 Sum_probs=52.3
Q ss_pred ehhhhhcC-CCCCccCCCCCchhcccccHHHHHHHH--hhHHHHHHHHhhc--CCcEEE-EecCCCCCCHHHHHHHHHHH
Q 010734 268 IRALKMHG-GGPQVVAGKPLDHAYLNENVALVEAGC--VNLARHIANTKAY--GANVVV-AVNMFATDSKAELNAVRNAA 341 (502)
Q Consensus 268 vRALK~HG-G~~~~~~~~pl~~~l~~eNl~AL~~G~--~NL~kHIeNi~~f--GvPvVV-AINrF~tDT~~Ei~~v~~~c 341 (502)
+.+|+-.+ |+....+| .+..+.+-++.+.++. ....+=|+.+++. |+.+.. .|--||.+|+++++...+++
T Consensus 255 l~~l~~~~~~~~~v~lg---lQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~i~~d~IvG~PgET~ed~~~ti~~l 331 (459)
T PRK14338 255 IHAVARLPKCCPHINLP---VQAGDDEVLKRMRRGYTVARYRELIARIREAIPDVSLTTDIIVGHPGETEEQFQRTYDLL 331 (459)
T ss_pred HHHHhcccccccceecC---cccCCHHHHHhccCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHHHHHHHHH
Confidence 45665443 45555444 2455566777777763 3334445566665 554322 45679999999999999999
Q ss_pred HHcCCCeEEEc
Q 010734 342 MAAGAFDAVVC 352 (502)
Q Consensus 342 ~~~Gv~~~~vs 352 (502)
++.+...+.+.
T Consensus 332 ~~l~~~~v~i~ 342 (459)
T PRK14338 332 EEIRFDKVHIA 342 (459)
T ss_pred HHcCCCEeEEE
Confidence 99998534333
No 302
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=25.77 E-value=2.5e+02 Score=24.89 Aligned_cols=54 Identities=13% Similarity=0.035 Sum_probs=32.9
Q ss_pred cCCcEEEEecCCCCCCHHHH--HHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 010734 315 YGANVVVAVNMFATDSKAEL--NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 371 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~Ei--~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~ 371 (502)
-++|++++.|+-.-....|+ +...+++...++. +. +.=++=|+|-.+|-+.+++
T Consensus 107 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~--e~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 107 EKIPIMLVGNKCDESHKREVSSNEGAACATEWNCA-FM--ETSAKTNHNVQELFQELLN 162 (165)
T ss_pred CCCCEEEEEECccccccCeecHHHHHHHHHHhCCc-EE--EeecCCCCCHHHHHHHHHh
Confidence 46999999999654322222 2334566666663 33 3335667888777776654
No 303
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=25.65 E-value=4e+02 Score=23.92 Aligned_cols=55 Identities=11% Similarity=0.006 Sum_probs=35.5
Q ss_pred cCCcEEEEecCCCCCCHH--------------HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 010734 315 YGANVVVAVNMFATDSKA--------------ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 371 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~--------------Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~ 371 (502)
.++|++++.|+-.-..+. +.+..++++++.+...+. +.=++-|+|-.+|-++++-
T Consensus 103 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~--e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 103 PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYI--ECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEE--EEeCCCCCCHHHHHHHHHh
Confidence 479999999996432211 223456777777773333 4445777888888877653
No 304
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=25.64 E-value=5.5e+02 Score=28.40 Aligned_cols=156 Identities=21% Similarity=0.289 Sum_probs=98.0
Q ss_pred HHHhh-cCC-cEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCC
Q 010734 310 ANTKA-YGA-NVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLD 387 (502)
Q Consensus 310 eNi~~-fGv-PvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~ 387 (502)
.-|+. +|- ++-++.|.=.. ++|++.+++.+.+.|+..+.+-+ .-.|+++..+-.+-+....+.=-|++.
T Consensus 22 ~wL~e~~~~eVia~tadvGQ~--eed~~~i~eKA~~~Ga~~~~viD-------~reeF~~~yi~~~i~ana~Yeg~YpL~ 92 (403)
T COG0137 22 KWLKEKGGAEVIAVTADVGQP--EEDLDAIREKALELGAEEAYVID-------AREEFVEDYIFPAIKANALYEGVYPLG 92 (403)
T ss_pred HHHHHhcCceEEEEEEeCCCC--hHHhHHHHHHHHHhCCceEEEee-------cHHHHHHHHHHHHHHhhceeecccccc
Confidence 33443 643 33344554333 89999999999999997555443 356788665554443323355558887
Q ss_pred CCH-----HHHHHHHHHHhCCCcee------------eCHH--------------------HHHHHHHHHHCCCCCCCee
Q 010734 388 VSI-----KEKIDTIARSYGASGVE------------YSEE--------------------AEKQIEMYTGQGFSGLPIC 430 (502)
Q Consensus 388 ~sI-----~eKIe~IA~IYGA~~V~------------fS~~--------------------A~kqLk~ie~~Gf~~LPVC 430 (502)
.+| .+|+=.+|+=.||+-|. |.-. -.+.++-.++.|+ ||=
T Consensus 93 TalaRPLIak~lVe~A~k~ga~avaHGcTGKGNDQvRFe~~~~al~p~lkiiAP~Rew~~~R~~~i~Ya~~~gi---pv~ 169 (403)
T COG0137 93 TALARPLIAKKLVEAAKKEGADAVAHGCTGKGNDQVRFELAILALNPDLKIIAPWREWNLTREEEIEYAEEHGI---PVK 169 (403)
T ss_pred chhhHHHHHHHHHHHHHHcCCCEEEecCCCCCCceeeeeeehhhhCCCcEEEeehhhhccChHHHHHHHHHcCC---Ccc
Confidence 776 57788888877776442 2211 3466777777887 887
Q ss_pred Ee-ecCCCCCCCCCCCCC--------------CCC---ceEE-------eeEEEeeCCCceEEeecCccccCCC
Q 010734 431 MA-KTQYSFSHNAAEKGA--------------PTG---FILP-------IRDVRASIGAGFIYPLVGTMSTMPG 479 (502)
Q Consensus 431 mA-KTqySlSdDp~l~g~--------------P~g---f~i~-------Vrdv~~~aGAGFiv~~~G~I~tMPG 479 (502)
+- +-+||. |.++.|+ |++ |++. -..|.|.-=.|.-|++-|.-|....
T Consensus 170 ~~~~kpySi--D~Nlwg~S~Egg~LEdp~~~pped~~~~tv~p~dap~~pe~v~I~Fe~G~PValnG~~~~~~~ 241 (403)
T COG0137 170 ATKEKPYSI--DENLWGRSIEGGDLEDPWNEPPEDAYEWTVSPEDAPDEPEEVEIGFEKGVPVALNGEKLSPVE 241 (403)
T ss_pred ccCCCCccc--chhhhccccccccccCcCcCCCchHHhhcCChhhCCCCCeEEEEEEecCeEEEEcCEeCCHHH
Confidence 77 357776 4445543 444 3331 2567777778888999987665543
No 305
>PLN02913 dihydrofolate synthetase
Probab=25.30 E-value=3.3e+02 Score=30.24 Aligned_cols=98 Identities=22% Similarity=0.202 Sum_probs=53.9
Q ss_pred HHHHHHHHhcC--CCCeEEeeccccccccchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhccccc
Q 010734 217 VADKIALKLVG--PGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNEN 294 (502)
Q Consensus 217 iAtk~alkla~--~~dyvVTEAGFgaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eN 294 (502)
+-|-+|+.+.. .-||+|=|+|-|--+ |+---.....|+++|| |-=++-+-+- +|. +-|+
T Consensus 160 ~~T~~A~~~F~~~~vD~aVlEvGlGGrl------DaTNvi~~~~p~vsVI--TnIg~DH~~~-----LG~------Tle~ 220 (510)
T PLN02913 160 VLTALAFKLFAQENVDIAVIEAGLGGAR------DATNVIDSSGLAASVI--TTIGEEHLAA-----LGG------SLES 220 (510)
T ss_pred HHHHHHHHHHhhCCCCEEEEEecCCCCc------ccccccCCCCCcEEEE--ccccHHHHhh-----hcc------cHHH
Confidence 55778888753 349999999998744 4333333345787765 4334433321 110 1234
Q ss_pred HHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010734 295 VALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 347 (502)
Q Consensus 295 l~AL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~ 347 (502)
+..=|.|+ + +-|.|+|++- +. .++-.+.+++.|++.+++
T Consensus 221 IA~eKagI---------i-k~g~pvV~~~---~~-~~~~~~vi~~~a~~~~a~ 259 (510)
T PLN02913 221 IALAKSGI---------I-KQGRPVVLGG---PF-LPHIESILRDKASSMNSP 259 (510)
T ss_pred HHHHHhhh---------c-cCCCCEEECC---CC-CHHHHHHHHHHHHHhCCC
Confidence 44444444 2 2577877653 11 122234556788888875
No 306
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=25.22 E-value=5.9e+02 Score=26.08 Aligned_cols=116 Identities=17% Similarity=0.096 Sum_probs=74.0
Q ss_pred HHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHH-------
Q 010734 300 AGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA------- 372 (502)
Q Consensus 300 ~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a------- 372 (502)
+|+.-|++=++.+++.|.+|+.=+-++.--+-.+ ...+.+.+..|+. +. ++..-+|...++=+.+..+.
T Consensus 70 ~gi~~l~~~~~~~~~~g~~VilD~K~~DIpnTv~-~~a~a~~~~~g~D-~v--Tvh~~~G~d~l~~~~~~~~~~~~~v~V 145 (261)
T TIGR02127 70 EGFKALEEVIAHARSLGLPVLADVKRGDIGSTAS-AYAKAWLGHLHAD-AL--TVSPYLGLDSLRPFLEYARANGAGIFV 145 (261)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEeeccChHHHHH-HHHHHHHhhcCCC-EE--EECCcCCHHHHHHHHHHHhhcCCEEEE
Confidence 4567778888888889999888777775543333 4556666567884 44 55567887776644443321
Q ss_pred -hh-cCCC--Ccccc-CCCCCCHHHHHHHHHH-Hh------CCCceee---CHHHHHHHHHH
Q 010734 373 -CE-NVTQ--PLKFL-YPLDVSIKEKIDTIAR-SY------GASGVEY---SEEAEKQIEMY 419 (502)
Q Consensus 373 -~e-~~~~--~fk~L-Y~~~~sI~eKIe~IA~-IY------GA~~V~f---S~~A~kqLk~i 419 (502)
+. ..|. .|+-+ .+...++.+.+-..|+ .. |.++|+- ||+..+.+++.
T Consensus 146 lvlTSnp~~~~lq~~~~~~~~~~~~~V~~~a~~~~~~~~~~g~~GvV~gAT~p~e~~~iR~~ 207 (261)
T TIGR02127 146 LVKTSNPGGADLQDLRVSDGRTVYEEVAELAGELNESPGDCSSVGAVVGATSPGDLLRLRIE 207 (261)
T ss_pred EEeCCCCCHHHHhhhhccCCCCHHHHHHHHHHHhccccCcCCceEEEECCCCHHHHHHHHHh
Confidence 10 1111 24321 1123389999999999 75 6889999 87777777664
No 307
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.06 E-value=1.5e+02 Score=31.95 Aligned_cols=77 Identities=13% Similarity=0.084 Sum_probs=54.5
Q ss_pred ehhhhhcC-CCCCccCCCCCchhcccccHHHHHHH--HhhHHHHHHHHhhc--CCcEEE-EecCCCCCCHHHHHHHHHHH
Q 010734 268 IRALKMHG-GGPQVVAGKPLDHAYLNENVALVEAG--CVNLARHIANTKAY--GANVVV-AVNMFATDSKAELNAVRNAA 341 (502)
Q Consensus 268 vRALK~HG-G~~~~~~~~pl~~~l~~eNl~AL~~G--~~NL~kHIeNi~~f--GvPvVV-AINrF~tDT~~Ei~~v~~~c 341 (502)
+++++-.| |+....+| .+.-+.+-+..+.+| .+...+-++.+++. |+.+.. .|=-||.+|+++++...+++
T Consensus 245 l~~~~~~~~~~~~l~ig---iqSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~~gi~i~~d~IvG~PgET~ed~~~tl~~l 321 (437)
T PRK14331 245 IKAMADIPQVCEHLHLP---FQAGSDRILKLMDRGYTKEEYLEKIELLKEYIPDITFSTDIIVGFPTETEEDFEETLDVL 321 (437)
T ss_pred HHHHHcCCccCCceecc---cccCChHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEecCEEEECCCCCHHHHHHHHHHH
Confidence 35666665 56655555 244556667777776 34667778888887 775432 34568999999999999999
Q ss_pred HHcCCC
Q 010734 342 MAAGAF 347 (502)
Q Consensus 342 ~~~Gv~ 347 (502)
++.+..
T Consensus 322 ~~l~~~ 327 (437)
T PRK14331 322 KKVEFE 327 (437)
T ss_pred HhcCcc
Confidence 998874
No 308
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=25.05 E-value=2.6e+02 Score=28.34 Aligned_cols=100 Identities=15% Similarity=0.055 Sum_probs=60.9
Q ss_pred HhhHHHHHHHHhhcCCcEEEEecC-CCC-CCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcC-CC
Q 010734 302 CVNLARHIANTKAYGANVVVAVNM-FAT-DSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENV-TQ 378 (502)
Q Consensus 302 ~~NL~kHIeNi~~fGvPvVVAINr-F~t-DT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~-~~ 378 (502)
+.|+.++|+.+|+.|..+.+++.- |.+ -|++++..+.+.+.+.|+..+.+++...-. .-+-....++.+.+. +-
T Consensus 117 ~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~---~P~~v~~lv~~l~~~~~~ 193 (275)
T cd07937 117 VRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAGLL---TPYAAYELVKALKKEVGL 193 (275)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC---CHHHHHHHHHHHHHhCCC
Confidence 478999999999999998888863 433 456777777777888999888888765332 222233333333221 11
Q ss_pred C--ccccCCCCCCHHHHHHHHHH-HhCCCcee
Q 010734 379 P--LKFLYPLDVSIKEKIDTIAR-SYGASGVE 407 (502)
Q Consensus 379 ~--fk~LY~~~~sI~eKIe~IA~-IYGA~~V~ 407 (502)
. |+.=-+..+.+. +.++- -.|++-|+
T Consensus 194 ~l~~H~Hnd~GlA~a---N~laA~~aGa~~vd 222 (275)
T cd07937 194 PIHLHTHDTSGLAVA---TYLAAAEAGVDIVD 222 (275)
T ss_pred eEEEEecCCCChHHH---HHHHHHHhCCCEEE
Confidence 1 333223344443 34444 66887666
No 309
>PRK07206 hypothetical protein; Provisional
Probab=25.03 E-value=5.5e+02 Score=26.85 Aligned_cols=118 Identities=15% Similarity=0.184 Sum_probs=60.9
Q ss_pred HHHHhhcCCcEEEEecC----------CCCCC-H-----HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHH
Q 010734 309 IANTKAYGANVVVAVNM----------FATDS-K-----AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 372 (502)
Q Consensus 309 IeNi~~fGvPvVVAINr----------F~tDT-~-----~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a 372 (502)
++.+++.|..+|+.... |..+. . .+++.+.+.|++.++. ++++ |.|-.+.+|..+.+.
T Consensus 18 ~~a~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~d-~vi~-----~~e~~~~~~a~l~~~ 91 (416)
T PRK07206 18 APAFKKRGIEPIAVTSSCLLDPYYYASFDTSDFIEVIINGDIDDLVEFLRKLGPE-AIIA-----GAESGVELADRLAEI 91 (416)
T ss_pred HHHHHHcCCeEEEEEcCCCCchhhhcccCcccchhhhcCCCHHHHHHHHHHcCCC-EEEE-----CCCccHHHHHHHHHh
Confidence 45677789987766522 11111 1 2256788899999984 6665 457788888776543
Q ss_pred hhcCCCCccccCCCCCCHHHHHHHH--HHHhCCC---ceeeCHHHHHHHHHHHHCCCCCCCeeEeecCCC
Q 010734 373 CENVTQPLKFLYPLDVSIKEKIDTI--ARSYGAS---GVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYS 437 (502)
Q Consensus 373 ~e~~~~~fk~LY~~~~sI~eKIe~I--A~IYGA~---~V~fS~~A~kqLk~ie~~Gf~~LPVCmAKTqyS 437 (502)
..- + +-.-++.-....+|...- ++-.|-. ...++. ...-.+.+++.||.+.| ||.|--.+
T Consensus 92 l~l-~--~~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~~~~~~-~~e~~~~~~~~g~~~~P-~VvKP~~g 156 (416)
T PRK07206 92 LTP-Q--YSNDPALSSARRNKAEMINALAEAGLPAARQINTAD-WEEAEAWLRENGLIDRP-VVIKPLES 156 (416)
T ss_pred cCC-C--cCCChhhHHHhhCHHHHHHHHHHcCCCcccEEecCC-HHHHHHHHHhcCCCCCC-EEEeCCCC
Confidence 321 0 001111112234555542 2223333 233332 11222345667886778 46787665
No 310
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=24.92 E-value=1.5e+02 Score=29.39 Aligned_cols=123 Identities=17% Similarity=0.244 Sum_probs=78.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCcc----ccCCC-CCCHHHHHHHHHH--
Q 010734 327 ATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLK----FLYPL-DVSIKEKIDTIAR-- 399 (502)
Q Consensus 327 ~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk----~LY~~-~~sI~eKIe~IA~-- 399 (502)
|++|++|++.+.+.+.+.|+..+-+.-.| +.+|++.++ . +..+ -=||. ..+.+.|+..+..
T Consensus 13 p~~t~~~i~~lc~~A~~~~~~avcv~p~~-------v~~a~~~l~---~--~~v~v~tVigFP~G~~~~~~K~~E~~~Av 80 (211)
T TIGR00126 13 ADTTEEDIITLCAQAKTYKFAAVCVNPSY-------VPLAKELLK---G--TEVRICTVVGFPLGASTTDVKLYETKEAI 80 (211)
T ss_pred CCCCHHHHHHHHHHHHhhCCcEEEeCHHH-------HHHHHHHcC---C--CCCeEEEEeCCCCCCCcHHHHHHHHHHHH
Confidence 68999999999999999998644444444 455555442 1 1111 12333 3688999999988
Q ss_pred HhCCCceeeC-----------HHHHHHHHHHHHCCCCCCCe-eEeecCCCCCCCCCCCCCCCCceEEeeEEEeeCCCceE
Q 010734 400 SYGASGVEYS-----------EEAEKQIEMYTGQGFSGLPI-CMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFI 467 (502)
Q Consensus 400 IYGA~~V~fS-----------~~A~kqLk~ie~~Gf~~LPV-CmAKTqySlSdDp~l~g~P~gf~i~Vrdv~~~aGAGFi 467 (502)
-.||+.|.+- ....++++++.+.- ++.|+ -|-=|.| |+++- ....-++-+.+||-||
T Consensus 81 ~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~-~g~~lKvIlE~~~-L~~~e---------i~~a~~ia~eaGADfv 149 (211)
T TIGR00126 81 KYGADEVDMVINIGALKDGNEEVVYDDIRAVVEAC-AGVLLKVIIETGL-LTDEE---------IRKACEICIDAGADFV 149 (211)
T ss_pred HcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHc-CCCeEEEEEecCC-CCHHH---------HHHHHHHHHHhCCCEE
Confidence 6799988732 45556777777652 24553 2455666 77632 3345556677888887
Q ss_pred EeecC
Q 010734 468 YPLVG 472 (502)
Q Consensus 468 v~~~G 472 (502)
---||
T Consensus 150 KTsTG 154 (211)
T TIGR00126 150 KTSTG 154 (211)
T ss_pred EeCCC
Confidence 66655
No 311
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=24.80 E-value=4.8e+02 Score=25.25 Aligned_cols=117 Identities=22% Similarity=0.172 Sum_probs=59.4
Q ss_pred hHHHHHHHHhhcCCcEE-EEecCCCCCC----HHHHHHHHHHHHHcCCCeEEEcCccccCccc-----hhHHHHHHHHHh
Q 010734 304 NLARHIANTKAYGANVV-VAVNMFATDS----KAELNAVRNAAMAAGAFDAVVCSHHAHGGKG-----AVDLGIAVQRAC 373 (502)
Q Consensus 304 NL~kHIeNi~~fGvPvV-VAINrF~tDT----~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeG-----a~eLA~~Vv~a~ 373 (502)
-+...++-....|...| +-+| +..+. .+++..+++.|.+.|++ +.+..+| +|-.= ..++++.+..+.
T Consensus 77 ~~~~~v~~a~~~Ga~~v~~~~~-~~~~~~~~~~~~i~~v~~~~~~~g~~-~iie~~~-~g~~~~~~~~~~~i~~~~~~a~ 153 (235)
T cd00958 77 VLVASVEDAVRLGADAVGVTVY-VGSEEEREMLEELARVAAEAHKYGLP-LIAWMYP-RGPAVKNEKDPDLIAYAARIGA 153 (235)
T ss_pred hhhcCHHHHHHCCCCEEEEEEe-cCCchHHHHHHHHHHHHHHHHHcCCC-EEEEEec-cCCcccCccCHHHHHHHHHHHH
Confidence 34445666777888755 3344 33332 34788888899999996 7665444 33210 133444333344
Q ss_pred hcCCCCccccCCCCCCHHHHHHHHHH-----HhCCCceee-C-HHHHHHHHHHHHCCCCC
Q 010734 374 ENVTQPLKFLYPLDVSIKEKIDTIAR-----SYGASGVEY-S-EEAEKQIEMYTGQGFSG 426 (502)
Q Consensus 374 e~~~~~fk~LY~~~~sI~eKIe~IA~-----IYGA~~V~f-S-~~A~kqLk~ie~~Gf~~ 426 (502)
+.+..-.++-|+.+ + +-++++++ ++-+.++.- | ..+.++++++.+.|.+.
T Consensus 154 ~~GaD~Ik~~~~~~--~-~~~~~i~~~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~g 210 (235)
T cd00958 154 ELGADIVKTKYTGD--A-ESFKEVVEGCPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAG 210 (235)
T ss_pred HHCCCEEEecCCCC--H-HHHHHHHhcCCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcE
Confidence 43322233334332 1 33444443 222223221 2 23556677777777653
No 312
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=24.75 E-value=2.6e+02 Score=24.41 Aligned_cols=67 Identities=16% Similarity=0.134 Sum_probs=43.6
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 304 NLARHIANTKAYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 304 NL~kHIeNi~~fGvPvVVAINrF~tDT~~E--i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
++...|+.....++|+||+-|+-.-+.+.+ .+..+++|++.+.. +..+. ++=|.|-.++=..+++.+
T Consensus 92 ~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~-~~e~S--a~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 92 KWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVP-YFEVS--AKNGENVKEIFQELIRKI 160 (162)
T ss_dssp HHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSE-EEEEB--TTTTTTHHHHHHHHHHHH
T ss_pred cccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCE-EEEEE--CCCCCCHHHHHHHHHHHH
Confidence 333444444445689999999876544333 34678899999974 54443 566788777777766654
No 313
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=24.71 E-value=2e+02 Score=31.19 Aligned_cols=80 Identities=11% Similarity=0.081 Sum_probs=58.0
Q ss_pred eehhhhhcCCCCCccCCCCCchhcccccHHHHHHH--HhhHHHHHHHHhhcCCc-EEE-EecCCCCCCHHHHHHHHHHHH
Q 010734 267 TIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAG--CVNLARHIANTKAYGAN-VVV-AVNMFATDSKAELNAVRNAAM 342 (502)
Q Consensus 267 TvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G--~~NL~kHIeNi~~fGvP-vVV-AINrF~tDT~~Ei~~v~~~c~ 342 (502)
.++.||-. |+....+| .+...++-++.+.++ .+...+-+++++++|++ +-+ .|=-+|.+|.+++..-.+++.
T Consensus 153 ~l~~lk~~-G~~risiG---vqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~ 228 (455)
T TIGR00538 153 VIDALRDE-GFNRLSFG---VQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGLPKQTKESFAKTLEKVA 228 (455)
T ss_pred HHHHHHHc-CCCEEEEc---CCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCCCHHHHHHHHHHHH
Confidence 35677776 46666666 355666777777765 34566778899999987 323 344689999999999999999
Q ss_pred HcCCCeEE
Q 010734 343 AAGAFDAV 350 (502)
Q Consensus 343 ~~Gv~~~~ 350 (502)
+.|+..+.
T Consensus 229 ~l~~~~is 236 (455)
T TIGR00538 229 ELNPDRLA 236 (455)
T ss_pred hcCCCEEE
Confidence 99986443
No 314
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=24.31 E-value=4.3e+02 Score=26.89 Aligned_cols=116 Identities=16% Similarity=0.084 Sum_probs=62.6
Q ss_pred HHHHHHHHhhcCCcEEEEecC---CCCCC---HHHHHHHHHHHHHcCCC--eEEEcC---ccccCccchhHHHHHHHHHh
Q 010734 305 LARHIANTKAYGANVVVAVNM---FATDS---KAELNAVRNAAMAAGAF--DAVVCS---HHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 305 L~kHIeNi~~fGvPvVVAINr---F~tDT---~~Ei~~v~~~c~~~Gv~--~~~vs~---~wakGGeGa~eLA~~Vv~a~ 373 (502)
+.+.++-+++||+|+|+--+. -|.+. -++++.+.+.|.+.|+. +..+-- .|+++.+++.++-+.+-..-
T Consensus 105 ~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~IilDPgi~~~~~~~~~~~~~l~~i~~l~ 184 (261)
T PRK07535 105 LEVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIYIDPLVLPLSAAQDAGPEVLETIRRIK 184 (261)
T ss_pred CHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCCcccCChHHHHHHHHHHHHHH
Confidence 445577788999999986652 22222 24556667778889993 343332 24566666666665554443
Q ss_pred hc--C------CCCccccCCCCCCHHHHHHHHHHHhCCCceeeCHHHHHHHHHHH
Q 010734 374 EN--V------TQPLKFLYPLDVSIKEKIDTIARSYGASGVEYSEEAEKQIEMYT 420 (502)
Q Consensus 374 e~--~------~~~fk~LY~~~~sI~eKIe~IA~IYGA~~V~fS~~A~kqLk~ie 420 (502)
+. + .|+.+|.-+...-|-.=.-.+|.-+|-+.....|.-+.-++.+.
T Consensus 185 ~~~pg~p~l~G~Sn~Sfglp~r~~in~~fl~~a~~~Gl~~aI~np~~~~~~~~~~ 239 (261)
T PRK07535 185 ELYPKVHTTCGLSNISFGLPNRKLINRAFLVMAMGAGMDSAILDPLDRDLMGAIA 239 (261)
T ss_pred HhCCCCCEEEEeCCCccCCcchHHHHHHHHHHHHHcCCCEEeeCCCCHHHHHHHH
Confidence 32 1 23445555432222222223333677777776665544444443
No 315
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=24.27 E-value=1.6e+02 Score=30.71 Aligned_cols=49 Identities=4% Similarity=-0.033 Sum_probs=35.3
Q ss_pred HHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeE
Q 010734 301 GCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDA 349 (502)
Q Consensus 301 G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~ 349 (502)
.+.+..+-|+.++++|.++++-+--.+.-++.|++.+.+++++.|+..+
T Consensus 206 ~~~~vl~~L~~l~~~~~~~~ir~tlv~g~Nd~e~~~~a~l~~~~~~~~I 254 (322)
T PRK13762 206 AWERILETLELLPSKKTRTVIRITLVKGYNMHDPEGFAKLIERANPDFV 254 (322)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEEEEECCcCccHHHHHHHHHHHcCCCEE
Confidence 3566777778888889998887665554455555588899999998633
No 316
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=24.21 E-value=1.9e+02 Score=25.56 Aligned_cols=56 Identities=21% Similarity=0.113 Sum_probs=32.6
Q ss_pred HhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCe-----EEEcCccccCccchhHHHHHHH
Q 010734 312 TKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFD-----AVVCSHHAHGGKGAVDLGIAVQ 370 (502)
Q Consensus 312 i~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~-----~~vs~~wakGGeGa~eLA~~Vv 370 (502)
....++|++|++|+-.-...++++.+.+. .+... ..+.+.=++-|+|-.++-+.+.
T Consensus 111 ~~~~~~p~ivv~nK~D~~~~~~~~~i~~~---l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 171 (173)
T cd04155 111 EKLAGVPVLVFANKQDLATAAPAEEIAEA---LNLHDLRDRTWHIQACSAKTGEGLQEGMNWVC 171 (173)
T ss_pred hhhcCCCEEEEEECCCCccCCCHHHHHHH---cCCcccCCCeEEEEEeECCCCCCHHHHHHHHh
Confidence 34568999999999755443334444333 33321 1123445688888777655543
No 317
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=24.20 E-value=1.7e+02 Score=26.96 Aligned_cols=45 Identities=22% Similarity=0.200 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEcCcccc-----------CccchhHHHHHHHHHhh
Q 010734 330 SKAELNAVRNAAMAAGAFDAVVCSHHAH-----------GGKGAVDLGIAVQRACE 374 (502)
Q Consensus 330 T~~Ei~~v~~~c~~~Gv~~~~vs~~wak-----------GGeGa~eLA~~Vv~a~e 374 (502)
+++|++-+.+...+.|+.-.++-+||-. |=+-+++||++|-++++
T Consensus 66 l~~EV~pvi~aL~~~GI~vtAlHNH~l~e~Prl~ymH~~~~gdp~~lA~~vr~Ald 121 (123)
T PF07485_consen 66 LEDEVNPVISALRKNGIEVTALHNHWLFEQPRLFYMHIWGVGDPAKLARKVRAALD 121 (123)
T ss_pred cHHHHHHHHHHHHHCCceEEEEecccccCCCCEEEEEEEecCCHHHHHHHHHHHHh
Confidence 4566666666666666655555566542 33367889999988875
No 318
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=24.17 E-value=8e+02 Score=25.87 Aligned_cols=170 Identities=16% Similarity=0.111 Sum_probs=103.0
Q ss_pred CCceeecccccchhHHHHhhhccCcCcceeecCceeEEcccccchhcccCchHHHHHHHHHh--cCCCCeEEe-ecccc-
Q 010734 164 GDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKL--VGPGGFVVT-EAGFG- 239 (502)
Q Consensus 164 g~pvta~DL~~~GAm~~lLkdAi~PNLvQTlEgtPa~vHgGPFANIAhG~nSviAtk~alkl--a~~~dyvVT-EAGFg- 239 (502)
.+.|.+.|.||..-.+..+ |-.-..=|..|+.||++.-+|+=+++.+ -++.+..|. =.|=|
T Consensus 39 ~~~v~~~~iGC~~~~~g~~---------------p~~~~~~~~i~~~~G~~~~~A~G~a~A~~~~~~~~~~Vva~~GDG~ 103 (300)
T PRK11864 39 EKTVLVIPASCSTVIQGDT---------------PKSPLTVPVLHTAFAATAAVASGIEEALKARGEKGVIVVGWAGDGG 103 (300)
T ss_pred CCeEEEeCCCccceecCCC---------------CcccccccceeehhhChHHHHHHHHHHHHhhCCCCcEEEEEEccCc
Confidence 3567777888775432221 1111234778999999999998776654 333344333 44444
Q ss_pred -ccccchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCcc-----------CCCCCchhcccccHHHHHHHHhhHHH
Q 010734 240 -ADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVV-----------AGKPLDHAYLNENVALVEAGCVNLAR 307 (502)
Q Consensus 240 -aDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~-----------~~~pl~~~l~~eNl~AL~~G~~NL~k 307 (502)
+|.|.|-+...--| +-+.++||---+.-=+-||..... .|++.+ +-| +
T Consensus 104 ~~~~g~~~l~~A~~~----~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~----kkd----------i-- 163 (300)
T PRK11864 104 TADIGFQALSGAAER----NHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREH----KKP----------V-- 163 (300)
T ss_pred cccccHHHHHHHHHh----CcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCC----CCC----------H--
Confidence 47777666654444 355677776666555666644321 122111 112 2
Q ss_pred HHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEc-----CccccCccchhHHHHHHHHH
Q 010734 308 HIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVC-----SHHAHGGKGAVDLGIAVQRA 372 (502)
Q Consensus 308 HIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs-----~~wakGGeGa~eLA~~Vv~a 372 (502)
.+.+..+|+|.|.-++-+ |-.+=++.+++..+..|. .++++ ..|..+.+-+.+.++..|+.
T Consensus 164 -~~i~~a~g~~yVA~~~~~--~~~~~~~~i~~A~~~~Gp-s~I~~~spC~~~~~~~~~~~~~~~k~Av~t 229 (300)
T PRK11864 164 -PDIMAAHKVPYVATASIA--YPEDFIRKLKKAKEIRGF-KFIHLLAPCPPGWRFDPDKTIEIARLAVET 229 (300)
T ss_pred -HHHHHHcCCCEEEEEeCC--CHHHHHHHHHHHHhCCCC-EEEEEeCCCCCCCCcChHHHHHHHHHHHHc
Confidence 234567999999888764 555557777777666676 45554 46888888888888887754
No 319
>COG1369 POP5 RNase P/RNase MRP subunit POP5 [Translation, ribosomal structure and biogenesis]
Probab=24.15 E-value=62 Score=30.15 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=37.0
Q ss_pred hhhHHHHHHccCCHHHHHHHhcCcEEeecCCCCceeecccccchhHHHHhhhccCcCc
Q 010734 133 ASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTL 190 (502)
Q Consensus 133 ASEiMAIl~La~~l~Dlk~Rl~~ivv~~~~~g~pvta~DL~~~GAm~~lLkdAi~PNL 190 (502)
-.++||-|.|++.. +|+||...=||++|.|-..-+-++.||-
T Consensus 77 ~~~v~aAL~l~~~~----------------~g~rv~I~~lgvSGTIKka~~~~l~~~~ 118 (124)
T COG1369 77 VDLVRAALMLAREV----------------NGKRVIIVVLGVSGTIKKAKRKFLRRNK 118 (124)
T ss_pred HHHHHHHHHHHHHh----------------CCceEEEEEeeccccHHHHHHHHhccCC
Confidence 46899999998754 8999999999999999999999988873
No 320
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=23.99 E-value=1.1e+02 Score=36.65 Aligned_cols=111 Identities=21% Similarity=0.244 Sum_probs=77.6
Q ss_pred HHHHHHHhhcCCcEEEEecCCCCCCHHH-HHHHHHHHHHcCCCeEEEcCccccCccch------hHHHHHHHHHhhc---
Q 010734 306 ARHIANTKAYGANVVVAVNMFATDSKAE-LNAVRNAAMAAGAFDAVVCSHHAHGGKGA------VDLGIAVQRACEN--- 375 (502)
Q Consensus 306 ~kHIeNi~~fGvPvVVAINrF~tDT~~E-i~~v~~~c~~~Gv~~~~vs~~wakGGeGa------~eLA~~Vv~a~e~--- 375 (502)
-+-.+-..+-|||||-. +|-+-| ++.+.+++++.|.+ +.+--.|.-||.|. .+|++++-++-.+
T Consensus 123 v~Ar~~A~~agvPvipg-----t~~~~~~~ee~~~fa~~~gyP-vmiKA~~GGGGRGMR~vr~~~~l~~~~~~AksEAka 196 (1149)
T COG1038 123 VKARNAAIKAGVPVIPG-----TDGPIETIEEALEFAEEYGYP-VMIKAAAGGGGRGMRVVRSEADLAEAFERAKSEAKA 196 (1149)
T ss_pred HHHHHHHHHcCCCccCC-----CCCCcccHHHHHHHHHhcCCc-EEEEEccCCCccceeeecCHHHHHHHHHHHHHHHHH
Confidence 33445566789999985 444444 77788999999995 99999999999995 4677777665332
Q ss_pred --------------CC------------CCccccCCCCCCHHHHHHHHHHHhCCCceeeCHHHHHHHHH-----HHHCCC
Q 010734 376 --------------VT------------QPLKFLYPLDVSIKEKIDTIARSYGASGVEYSEEAEKQIEM-----YTGQGF 424 (502)
Q Consensus 376 --------------~~------------~~fk~LY~~~~sI~eKIe~IA~IYGA~~V~fS~~A~kqLk~-----ie~~Gf 424 (502)
+| .+.-.||+.+-|+..+=.++.. -|..+.+|++-+.+|-. .++-||
T Consensus 197 AFG~~eVyvEk~ve~pkHIEVQiLgD~~GnvvHLfERDCSvQRRhQKVVE--~APa~~L~~~~R~~ic~~Avkla~~~~Y 274 (1149)
T COG1038 197 AFGNDEVYVEKLVENPKHIEVQILGDTHGNVVHLFERDCSVQRRHQKVVE--VAPAPYLSPELRDEICDDAVKLARNIGY 274 (1149)
T ss_pred hcCCCcEEhhhhhcCcceeEEEEeecCCCCEEEEeecccchhhccceeEE--ecCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 11 1244689999999877665543 46677788888777643 344565
No 321
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=23.92 E-value=3.1e+02 Score=23.90 Aligned_cols=62 Identities=24% Similarity=0.252 Sum_probs=32.9
Q ss_pred HHHHhhcCCcEEEEecCCCCCCH--HHH-HHHHHHHHH----cC--CCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 309 IANTKAYGANVVVAVNMFATDSK--AEL-NAVRNAAMA----AG--AFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 309 IeNi~~fGvPvVVAINrF~tDT~--~Ei-~~v~~~c~~----~G--v~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
++.++.+++|++|++|+-.-... +++ +.+.++... .+ +. +. ..=++=|+|-.+|.+.+.+..
T Consensus 95 ~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 95 IKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQ-IV--PTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred HHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCc-EE--EeecccCCCHHHHHHHHHHhh
Confidence 34456799999999999643221 111 222222111 11 21 22 222455678777777766654
No 322
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=23.90 E-value=3.3e+02 Score=24.91 Aligned_cols=54 Identities=15% Similarity=0.037 Sum_probs=32.1
Q ss_pred CCcEEEEecCCCCC-CHHH-------------HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 010734 316 GANVVVAVNMFATD-SKAE-------------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 371 (502)
Q Consensus 316 GvPvVVAINrF~tD-T~~E-------------i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~ 371 (502)
++|+||+.|+-.-. ...+ .+...++|++.+...+ .+.=++=|+|-.+|-+.+++
T Consensus 105 ~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 105 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY--LECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred CCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEE--EEecccccCCHHHHHHHHHH
Confidence 79999999996432 1111 2233456777775223 34445666887777666554
No 323
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=23.64 E-value=4.2e+02 Score=27.89 Aligned_cols=51 Identities=18% Similarity=0.174 Sum_probs=38.5
Q ss_pred HhhHHHHHHHHhhcCCcEEEEecCCCC---CCHHHHHHHHHHHHH---cCCCeEEEc
Q 010734 302 CVNLARHIANTKAYGANVVVAVNMFAT---DSKAELNAVRNAAMA---AGAFDAVVC 352 (502)
Q Consensus 302 ~~NL~kHIeNi~~fGvPvVVAINrF~t---DT~~Ei~~v~~~c~~---~Gv~~~~vs 352 (502)
++.|..=++--++.||..|+||.=+-. ..+++++.|.+..++ +||+.+++.
T Consensus 55 l~~l~~L~~~a~~~~V~Fv~aisPg~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fail 111 (306)
T PF07555_consen 55 LAELKELADAAKANGVDFVYAISPGLDICYSSEEDFEALKAKFDQLYDLGVRSFAIL 111 (306)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEBGTTT--TSHHHHHHHHHHHHHHHHCTT--EEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEEECcccccccCcHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 366788899999999999999986544 358999999887664 799988875
No 324
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.58 E-value=3.1e+02 Score=29.81 Aligned_cols=178 Identities=22% Similarity=0.241 Sum_probs=103.1
Q ss_pred HHHHHHhcCCCCeEEee--ccccccccchh-ccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccH
Q 010734 219 DKIALKLVGPGGFVVTE--AGFGADIGAEK-FMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENV 295 (502)
Q Consensus 219 tk~alkla~~~dyvVTE--AGFgaDlGaEK-F~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl 295 (502)
....|+.++++.++-.| .|+|.++..|. .++..-+..-..|-.++ -|- +..||.-+ ..+.+-
T Consensus 121 ~~~~l~~~~~~g~~~~e~~~~~g~~~~~e~~~~~~~~~~~~~~~~~~~--~t~--~~~~~~~~-----------~~~~~r 185 (406)
T COG1228 121 ALPRLKRAGSAGVTTGERKSGYGLDLETEGGHLRAAAGLKESRPVAVG--STP--LAAHGVPE-----------ERKATR 185 (406)
T ss_pred HHHHHHHHHHcCCcccceeeeecccccccccccchhhhcccccccccc--Ccc--ccccCCcc-----------cccchH
Confidence 34455555556777666 47788888876 66666665544444332 232 23454322 234677
Q ss_pred HHHHHHHhhHHHHHHH--HhhcCCcEEEEecCC---CCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHH-
Q 010734 296 ALVEAGCVNLARHIAN--TKAYGANVVVAVNMF---ATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAV- 369 (502)
Q Consensus 296 ~AL~~G~~NL~kHIeN--i~~fGvPvVVAINrF---~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~V- 369 (502)
++...|+.+|.+.+.. +.+| .+.| ..-|++|+..+.+.+++.|.. + ...+.|.+| ..+|-+.
T Consensus 186 ~~~~~g~~~~i~~~a~~~l~~~-------~d~~~~~~~fs~~e~~~~l~~a~~~g~~-v---~~HA~~~~g-~~~A~~~g 253 (406)
T COG1228 186 EAYVAGARLLIKIVATGGLASF-------VDAFCEGGQFSPEEIRAVLAAALKAGIP-V---KAHAHGADG-IKLAIRLG 253 (406)
T ss_pred HHHHHHHHHHHHHHHhccccch-------hhccccccccCHHHHHHHHHHHHHCCCc-e---EEEecccch-HHHHHHhC
Confidence 8899999885554433 3222 2323 456889999999999999995 5 567778774 4444332
Q ss_pred HHHhhcCCCCccccCCCCCCHHHHHHHH-----HHHhCCCceeeCHHHHHHHHHHHHCCCCCCCeeEe
Q 010734 370 QRACENVTQPLKFLYPLDVSIKEKIDTI-----ARSYGASGVEYSEEAEKQIEMYTGQGFSGLPICMA 432 (502)
Q Consensus 370 v~a~e~~~~~fk~LY~~~~sI~eKIe~I-----A~IYGA~~V~fS~~A~kqLk~ie~~Gf~~LPVCmA 432 (502)
+..+ -+.+|-++.++....+.. +..+-+...+..+.-.+-.+++.+.|. ||+++
T Consensus 254 ~~s~------~H~~~ld~~~~~~~a~~~~g~~~~~l~p~~~~~l~e~~~~~~~~l~~~GV---~vai~ 312 (406)
T COG1228 254 AKSA------EHGTLLDHETAALLAEKGAGTPVPVLLPRTKFELRELDYKPARKLIDAGV---KVAIG 312 (406)
T ss_pred ccee------hhhhhcCHhHHHHHhhccCCCccccccchhhhhhhcccchhHHHHHHCCC---EEEEE
Confidence 2222 255666666666655533 223333344444444555677777775 56554
No 325
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=23.55 E-value=2.8e+02 Score=31.62 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=29.4
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCC---CCHHHHHHHHHHHHHcC
Q 010734 304 NLARHIANTKAYGANVVVAVNMFAT---DSKAELNAVRNAAMAAG 345 (502)
Q Consensus 304 NL~kHIeNi~~fGvPvVVAINrF~t---DT~~Ei~~v~~~c~~~G 345 (502)
..+.|++-++.+|+|++|++|+-.- +.++-++.+.++..+.|
T Consensus 104 qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g 148 (594)
T TIGR01394 104 QTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELG 148 (594)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhc
Confidence 3466788888899999999999764 22334566666665444
No 326
>PTZ00099 rab6; Provisional
Probab=23.43 E-value=3.4e+02 Score=25.37 Aligned_cols=70 Identities=11% Similarity=-0.000 Sum_probs=41.3
Q ss_pred hhHHHHHHHHhh---cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 303 VNLARHIANTKA---YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 303 ~NL~kHIeNi~~---fGvPvVVAINrF~tDT~--~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
.++.++++.+.+ -++|+|++.|+..--.. -..+...+++++.+.. +. +.=++=|+|-.++-+.+++.+.+
T Consensus 69 ~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~-~~--e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 69 ENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTM-FH--ETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCE-EE--EEECCCCCCHHHHHHHHHHHHHh
Confidence 344445554433 36889999999442111 1223345667777663 33 33456678888888887776643
No 327
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.39 E-value=2e+02 Score=31.04 Aligned_cols=92 Identities=8% Similarity=0.022 Sum_probs=60.4
Q ss_pred cccCCCCCCeEEEEeeehhhhhcC-CCCCccCCCCCchhcccccHHHHHHHH--hhHHHHHHHHhhc--CCcEEE-EecC
Q 010734 252 CRYSGLTPQCAVIVATIRALKMHG-GGPQVVAGKPLDHAYLNENVALVEAGC--VNLARHIANTKAY--GANVVV-AVNM 325 (502)
Q Consensus 252 cr~~gl~P~a~VlVaTvRALK~HG-G~~~~~~~~pl~~~l~~eNl~AL~~G~--~NL~kHIeNi~~f--GvPvVV-AINr 325 (502)
-|.+.+.|+.+ ==-.+++++-++ |+....+| .+.-+.+-|.++.+|. +...+-++.+++. |+.+-. .|-=
T Consensus 215 ir~~s~~p~~~-~~ell~~~~~~~~~~~~l~ig---lQSgsd~vLk~M~R~~t~~~~~~~v~~lr~~~p~i~i~~d~IvG 290 (420)
T PRK14339 215 IRFTSPHPLHM-DDKFLEEFAKNPKICKSIHMP---LQSGSSEILKAMKRGYTKEWFLNRAEKLRALVPEVSISTDIIVG 290 (420)
T ss_pred EEECCCChhhc-CHHHHHHHHcCCCccCceEeC---CccCCHHHHHhccCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEE
Confidence 34444555421 111356777665 66666665 3556677788888874 3444567777775 444322 3557
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC
Q 010734 326 FATDSKAELNAVRNAAMAAGAF 347 (502)
Q Consensus 326 F~tDT~~Ei~~v~~~c~~~Gv~ 347 (502)
||.+|+++++...+++++.+..
T Consensus 291 fPgETeedf~~Tl~fl~~l~~~ 312 (420)
T PRK14339 291 FPGESDKDFEDTMDVLEKVRFE 312 (420)
T ss_pred CCCCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999998874
No 328
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=23.34 E-value=3.8e+02 Score=27.26 Aligned_cols=24 Identities=17% Similarity=0.058 Sum_probs=17.7
Q ss_pred hhcccccHHHHHHHHhhHHHHHHH
Q 010734 288 HAYLNENVALVEAGCVNLARHIAN 311 (502)
Q Consensus 288 ~~l~~eNl~AL~~G~~NL~kHIeN 311 (502)
.++-++|.+++.+-+..|.+.++.
T Consensus 145 ~~~y~~N~~~~~~~L~~l~~~~~~ 168 (287)
T cd01137 145 AETYQKNAAAYKAKLKALDEWAKA 168 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567888888888888886665
No 329
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=23.33 E-value=2.9e+02 Score=27.25 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=31.7
Q ss_pred HHHhhcCCcEEEEecCCC--CCCHHHHHHHHHHHHHcCCCeEEEc
Q 010734 310 ANTKAYGANVVVAVNMFA--TDSKAELNAVRNAAMAAGAFDAVVC 352 (502)
Q Consensus 310 eNi~~fGvPvVVAINrF~--tDT~~Ei~~v~~~c~~~Gv~~~~vs 352 (502)
+.+.+.|+++.|-+=.-| +|+++|++.+.+++++.++..+.+.
T Consensus 121 ~~l~~~g~~v~iR~~vIPg~nd~~e~i~~ia~~l~~l~~~~~~ll 165 (213)
T PRK10076 121 RLLVSEGVNVIPRLPLIPGFTLSRENMQQALDVLIPLGIKQIHLL 165 (213)
T ss_pred HHHHhCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHcCCceEEEe
Confidence 345567888877666566 4999999999999998887544333
No 330
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=23.17 E-value=1.8e+02 Score=31.65 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=32.4
Q ss_pred cCCcE-EEEecC-CCCCCHHHHHHHHHHHHHcCCCeEEEcC-ccccCccchhHHH
Q 010734 315 YGANV-VVAVNM-FATDSKAELNAVRNAAMAAGAFDAVVCS-HHAHGGKGAVDLG 366 (502)
Q Consensus 315 fGvPv-VVAINr-F~tDT~~Ei~~v~~~c~~~Gv~~~~vs~-~wakGGeGa~eLA 366 (502)
.|.++ ++-||+ +..+++++.+.++++|++.|+. +.+-+ .+...|.+..+.|
T Consensus 43 ~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~-~~~~~~~~~~~~~~~e~~A 96 (436)
T PRK10660 43 PGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVP-LVVERVQLDQRGLGIEAAA 96 (436)
T ss_pred CCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCc-EEEEEEeccCCCCCHHHHH
Confidence 35444 456785 6677888889999999999996 54432 2223344444444
No 331
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=23.16 E-value=4.3e+02 Score=26.15 Aligned_cols=78 Identities=17% Similarity=0.062 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHH--HHHHHHHhhcCCCCccccCCCCCCHHHHHHHHHHHhCCCce
Q 010734 329 DSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDL--GIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARSYGASGV 406 (502)
Q Consensus 329 DT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eL--A~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~IYGA~~V 406 (502)
.|+.......+.+.+.|+..+.+.++-.+|=.-+.++ .+++.+. .+...++.-.-+=.+.+..+.+.+|+++|
T Consensus 150 ~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~-----~~ipvia~GGv~s~~d~~~~~~~~G~~gv 224 (253)
T PRK02083 150 PTGLDAVEWAKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSDA-----VNVPVIASGGAGNLEHFVEAFTEGGADAA 224 (253)
T ss_pred ecCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHhh-----CCCCEEEECCCCCHHHHHHHHHhCCccEE
Confidence 3444444555667789997555555544453333443 3444332 23445555544444556655446888887
Q ss_pred eeCHH
Q 010734 407 EYSEE 411 (502)
Q Consensus 407 ~fS~~ 411 (502)
.....
T Consensus 225 ivg~a 229 (253)
T PRK02083 225 LAASI 229 (253)
T ss_pred eEhHH
Confidence 75433
No 332
>TIGR02924 ICDH_alpha isocitrate dehydrogenase. This family of mainly alphaproteobacterial enzymes is a member of the isocitrate/isopropylmalate dehydrogenase superfamily described by pfam00180. Every member of the seed of this model appears to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 vs. NADPH -- 1.1.1.42) is unclear.
Probab=23.03 E-value=5e+02 Score=29.28 Aligned_cols=140 Identities=20% Similarity=0.257 Sum_probs=90.4
Q ss_pred CchHHHHHHHHHhcCC---CCeEEeecccc---ccccchhccccccccCCCCCCeEEE--EeeehhhhhcCCCCCccCCC
Q 010734 213 NSSIVADKIALKLVGP---GGFVVTEAGFG---ADIGAEKFMNIKCRYSGLTPQCAVI--VATIRALKMHGGGPQVVAGK 284 (502)
Q Consensus 213 ~nSviAtk~alkla~~---~dyvVTEAGFg---aDlGaEKF~dIkcr~~gl~P~a~Vl--VaTvRALK~HGG~~~~~~~~ 284 (502)
.+..+.|-++++|+.. -|.+||+==|| ||+++.= +=..|+.|++-+= .|---+ -||-+|. -.|+
T Consensus 198 ~e~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDILSDlaA~l-----~GslGlapSaNiG~~~amFEp--vHGSAPd-IAGk 269 (473)
T TIGR02924 198 SEHYIVDIGMARLATNPENFDVIVTPNLYGDILSDVAAEI-----SGSVGLAGSANIGEEYAMFEA--VHGSAPD-IAGQ 269 (473)
T ss_pred EeeHHHHHHHHHHhhCcccceEEEEccccchhhhHHHHHh-----cCCcCcccceecCCCcceeec--CCCchhh-hCCC
Confidence 3568899999999863 38999999998 7877663 5567777887663 111122 3766553 2342
Q ss_pred CCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCcc----ccCcc
Q 010734 285 PLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHH----AHGGK 360 (502)
Q Consensus 285 pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~w----akGGe 360 (502)
..-|.-|+--..+-|.+|+.- .|..+-|+.-.+.+-+.|.. ..+.. +.|..
T Consensus 270 ------~iANP~a~IlSaamML~hLG~----------------~~~A~~I~~AV~~vl~~G~~---T~Dl~~~~~~gg~~ 324 (473)
T TIGR02924 270 ------NIANPSGLLNAAIQMLVHIGQ----------------SDIAQLIYNAWLKTLEDGVH---TADIYNEKTSKQKV 324 (473)
T ss_pred ------CccChHHHHHHHHHHHHHcCC----------------HHHHHHHHHHHHHHHHcCCc---CccccccccCCCCc
Confidence 357888888888899998532 12223333333344455753 22332 23456
Q ss_pred chhHHHHHHHHHhhcCCCCccc-cCC
Q 010734 361 GAVDLGIAVQRACENVTQPLKF-LYP 385 (502)
Q Consensus 361 Ga~eLA~~Vv~a~e~~~~~fk~-LY~ 385 (502)
+..|.+++|++.+.+.|..+++ .|+
T Consensus 325 sT~e~~daVi~~l~~~p~~~~~~~~~ 350 (473)
T TIGR02924 325 GTKEFAEAVTANLGKKPETLPKALYS 350 (473)
T ss_pred CHHHHHHHHHHHhccccccCcccccc
Confidence 8999999999999887776653 564
No 333
>PLN03108 Rab family protein; Provisional
Probab=23.02 E-value=3.1e+02 Score=26.01 Aligned_cols=47 Identities=11% Similarity=0.073 Sum_probs=29.4
Q ss_pred cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcCccccCccchhH
Q 010734 315 YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVD 364 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~--~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~e 364 (502)
-++|++++.|+..-... -..+...+++++.|+. +..+. ++=|+|-.+
T Consensus 110 ~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~S--a~~~~~v~e 158 (210)
T PLN03108 110 ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEAS--AKTAQNVEE 158 (210)
T ss_pred CCCcEEEEEECccCccccCCCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHH
Confidence 37999999998654321 1334556778888884 44333 444566655
No 334
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=22.85 E-value=1.7e+02 Score=30.48 Aligned_cols=52 Identities=21% Similarity=0.141 Sum_probs=40.3
Q ss_pred HHHHHhhcCCcEEEEec-CCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCc
Q 010734 308 HIANTKAYGANVVVAVN-MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGG 359 (502)
Q Consensus 308 HIeNi~~fGvPvVVAIN-rF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGG 359 (502)
=++.+.+-|+|+.|-+= -+|..+++|++.+.+.|.++|+..+......-.++
T Consensus 174 al~~l~eaGi~~~v~v~PIiP~~~d~e~e~~l~~~~~ag~~~v~~~~l~~~~~ 226 (297)
T COG1533 174 ALKELSEAGIPVGLFVAPIIPGLNDEELERILEAAAEAGARVVVYGTLRLRLD 226 (297)
T ss_pred HHHHHHHCCCeEEEEEecccCCCChHHHHHHHHHHHHcCCCeeEeeeeeccHH
Confidence 36678889999999988 58888889999999999999997544433333333
No 335
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=22.73 E-value=4.6e+02 Score=25.09 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=18.0
Q ss_pred ecCCCCCCHHHHHHHHHHHHHcCCCeEEE
Q 010734 323 VNMFATDSKAELNAVRNAAMAAGAFDAVV 351 (502)
Q Consensus 323 INrF~tDT~~Ei~~v~~~c~~~Gv~~~~v 351 (502)
+|-|..|.....+...+.|.+.|+..+.+
T Consensus 58 v~~i~~~~~~~~~~~~~~~~~~g~d~v~l 86 (236)
T cd04730 58 VNLLVPSSNPDFEALLEVALEEGVPVVSF 86 (236)
T ss_pred EeEecCCCCcCHHHHHHHHHhCCCCEEEE
Confidence 67777764233445567778899964444
No 336
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=22.73 E-value=2.1e+02 Score=24.76 Aligned_cols=57 Identities=11% Similarity=0.007 Sum_probs=30.4
Q ss_pred hhcCCcEEEEecCCCCCC---HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHH
Q 010734 313 KAYGANVVVAVNMFATDS---KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQ 370 (502)
Q Consensus 313 ~~fGvPvVVAINrF~tDT---~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv 370 (502)
...++|+++++|+..-.. .+|+....+... ..-..+.+.+.=++-|+|-.++-+.+.
T Consensus 101 ~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~-~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 101 KHRRVPILFFANKMDLPDALTAVKITQLLGLEN-IKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred ccCCCCEEEEEeCccccCCCCHHHHHHHhCCcc-ccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 346899999999976432 233332222111 011112223344678888887766543
No 337
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=22.72 E-value=5.6e+02 Score=23.79 Aligned_cols=58 Identities=16% Similarity=0.072 Sum_probs=36.1
Q ss_pred cCCcEEEEecCCCCC-CHHHH-------------HHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 315 YGANVVVAVNMFATD-SKAEL-------------NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 315 fGvPvVVAINrF~tD-T~~Ei-------------~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
-++|+|++.|+-.-. ...+. +...++|++.+...+..+. |+=|+|-.++=+.+++.+-
T Consensus 106 ~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~S--Ak~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 106 PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECS--ALNQDGVKEVFAEAVRAVL 177 (191)
T ss_pred CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeC--CCCCCCHHHHHHHHHHHHh
Confidence 379999999996532 21111 2345677777742243333 6778888888777776653
No 338
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=22.71 E-value=3e+02 Score=29.39 Aligned_cols=69 Identities=17% Similarity=0.119 Sum_probs=45.5
Q ss_pred hHHHHHHHHhhcCCcEEEEec-CCCCCCHH---HHHH-HHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHH
Q 010734 304 NLARHIANTKAYGANVVVAVN-MFATDSKA---ELNA-VRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 372 (502)
Q Consensus 304 NL~kHIeNi~~fGvPvVVAIN-rF~tDT~~---Ei~~-v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a 372 (502)
+-+.+++++.+-|+.-|+.++ -|.+|.-| ||+. .++.+++.|...+.-.-.--+--+...-||+.|.+.
T Consensus 244 ~t~~~l~~L~~~g~k~iiv~pigFvsDhlETL~Eid~e~~e~~~~~Gg~~y~rip~lN~~p~fi~~la~lv~~~ 317 (320)
T COG0276 244 YTDDLLEELGEKGVKKIIVVPIGFVSDHLETLYEIDHEYRELAEEAGGKKYVRIPCLNDSPEFIDALADLVREL 317 (320)
T ss_pred CHHHHHHHHHhcCCCeEEEECCchhhhhHHHHHHHHHHHHHHHHHhCCccEEecCCCCCCHHHHHHHHHHHHHH
Confidence 334567777778999888888 69998655 6665 577788888445665555544445555555555443
No 339
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=22.70 E-value=8.5e+02 Score=25.04 Aligned_cols=157 Identities=14% Similarity=0.190 Sum_probs=92.5
Q ss_pred cccchhccccccccCCCCCCeEEEEeeehhhhhcC-CCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHh-hcCCc
Q 010734 241 DIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHG-GGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTK-AYGAN 318 (502)
Q Consensus 241 DlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HG-G~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~-~fGvP 318 (502)
+-|.++|++.-=+...+.||.+=| | |+- |... +.++++ ...++ ++|+|
T Consensus 12 ~~~~~~~~~~~~~l~~~~p~fvsv--T-----~~~~~~~~------------~~t~~~-----------~~~l~~~~g~~ 61 (281)
T TIGR00677 12 EEGVQNLYERMDRMVASGPLFIDI--T-----WGAGGTTA------------ELTLTI-----------ASRAQNVVGVE 61 (281)
T ss_pred chHHHHHHHHHHHHhhCCCCEEEe--c-----cCCCCcch------------hhHHHH-----------HHHHHHhcCCC
Confidence 345677887777778888998744 2 432 2211 112221 33454 57999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHcCCCeE-EEcCccccCc------cchhHHHHHHHHHhhcC-CCCcc---ccCCCC
Q 010734 319 VVVAVNMFATDSKAELNAVRNAAMAAGAFDA-VVCSHHAHGG------KGAVDLGIAVQRACENV-TQPLK---FLYPLD 387 (502)
Q Consensus 319 vVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~-~vs~~wakGG------eGa~eLA~~Vv~a~e~~-~~~fk---~LY~~~ 387 (502)
+|+=+--... +.+|++.....+.++|++.+ ++.---..+| +|.-+.|-..++.+.+. ...|. -.|+..
T Consensus 62 ~i~Hltcr~~-~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~ 140 (281)
T TIGR00677 62 TCMHLTCTNM-PIEMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEG 140 (281)
T ss_pred eeEEeccCCC-CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCC
Confidence 9886665444 45789888888899999865 3332222222 34456677777776542 12233 456533
Q ss_pred ----CCHHHHHHHHHH--HhCCCce----eeCHHHH-HHHHHHHHCCCCCCCe
Q 010734 388 ----VSIKEKIDTIAR--SYGASGV----EYSEEAE-KQIEMYTGQGFSGLPI 429 (502)
Q Consensus 388 ----~sI~eKIe~IA~--IYGA~~V----~fS~~A~-kqLk~ie~~Gf~~LPV 429 (502)
.+.+.-+..+.+ --||+-+ .|+..+- +=++++.+.|.+ +||
T Consensus 141 Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~Fd~~~~~~f~~~~~~~gi~-~PI 192 (281)
T TIGR00677 141 HPEAESVELDLKYLKEKVDAGADFIITQLFYDVDNFLKFVNDCRAIGID-CPI 192 (281)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEeeccceecHHHHHHHHHHHHHcCCC-CCE
Confidence 455444666665 4788744 4888874 555667777764 676
No 340
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=22.42 E-value=7.5e+02 Score=24.31 Aligned_cols=99 Identities=12% Similarity=0.099 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCC--ccccCCC-CCCHHHHHHHHHHHhCCC
Q 010734 328 TDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQP--LKFLYPL-DVSIKEKIDTIARSYGAS 404 (502)
Q Consensus 328 tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~--fk~LY~~-~~sI~eKIe~IA~IYGA~ 404 (502)
.++..+...+.+++.+.|.+.+++.. .+.. -+.++.+.+.+..++..-+ ....|+. ..+...-+.++.+ .+++
T Consensus 116 ~~~~~~~~~~~~~l~~~~~~~v~~l~--~~~~-~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~~~~-~~pd 191 (336)
T cd06360 116 FSNAQWAAPMGKYAADDGYKKVVTVA--WDYA-FGYEVVEGFKEAFTEAGGKIVKELWVPFGTSDFASYLAQIPD-DVPD 191 (336)
T ss_pred CchHHHHHHHHHHHHHcCCCeEEEEe--ccch-hhHHHHHHHHHHHHHcCCEEEEEEecCCCCcchHHHHHHHHh-cCCC
Confidence 35566777888888888877665542 2332 3455666666666532111 1223443 4566666666554 3455
Q ss_pred ceee---CHHHHHHHHHHHHCCCC-CCCee
Q 010734 405 GVEY---SEEAEKQIEMYTGQGFS-GLPIC 430 (502)
Q Consensus 405 ~V~f---S~~A~kqLk~ie~~Gf~-~LPVC 430 (502)
-|.+ .+.+..-++++.+.||. ++|++
T Consensus 192 ~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 221 (336)
T cd06360 192 AVFVFFAGGDAIKFVKQYDAAGLKAKIPLI 221 (336)
T ss_pred EEEEecccccHHHHHHHHHHcCCccCCeEE
Confidence 5542 56677788889999984 67775
No 341
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=22.39 E-value=6.4e+02 Score=23.52 Aligned_cols=120 Identities=18% Similarity=0.172 Sum_probs=63.1
Q ss_pred HHHHhhcCCcEEEEecC---------CCCCCHHHHHHHHHHHHHc--CCCeEEEcCccccCccchhHHHHHHHHHhhcCC
Q 010734 309 IANTKAYGANVVVAVNM---------FATDSKAELNAVRNAAMAA--GAFDAVVCSHHAHGGKGAVDLGIAVQRACENVT 377 (502)
Q Consensus 309 IeNi~~fGvPvVVAINr---------F~tDT~~Ei~~v~~~c~~~--Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~ 377 (502)
++.++..|+|+|..-+. ...|..+--..+.+++.+. |..++++-.. ..+.....+..+.+.+++++.
T Consensus 73 l~~l~~~~ipvv~~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~~~g~~~i~~l~~-~~~~~~~~~r~~g~~~~l~~~- 150 (268)
T cd06323 73 VKAANEAGIPVFTIDREANGGEVVSQIASDNVAGGKMAAEYLVKLLGGKGKVVELQG-IPGASAARERGKGFHEVVDKY- 150 (268)
T ss_pred HHHHHHCCCcEEEEccCCCCCceEEEEccCcHHHHHHHHHHHHHHhCCCceEEEEeC-CCCCccHHHHHHHHHHHHHhC-
Confidence 44555678888877331 1246665566777777776 6655554322 122234456666777777641
Q ss_pred CCcccc--CCCCCC---HHHHHHHHHHHhC-CCcee--eCHHHHHHHHHHHHCCCCCCCee
Q 010734 378 QPLKFL--YPLDVS---IKEKIDTIARSYG-ASGVE--YSEEAEKQIEMYTGQGFSGLPIC 430 (502)
Q Consensus 378 ~~fk~L--Y~~~~s---I~eKIe~IA~IYG-A~~V~--fS~~A~kqLk~ie~~Gf~~LPVC 430 (502)
..++.. +..+.+ ..+.+..+.+-+. .+.|. .+..|..-++.++++|.++++|+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~di~ii 211 (268)
T cd06323 151 PGLKVVASQPADFDRAKGLNVMENILQAHPDIKGVFAQNDEMALGAIEALKAAGKDDVKVV 211 (268)
T ss_pred CCcEEEecccCCCCHHHHHHHHHHHHHHCCCcCEEEEcCCchHHHHHHHHHHcCCCCcEEE
Confidence 123322 111222 3344444433122 23332 22445567788888888777765
No 342
>cd03768 SR_ResInv Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some
Probab=22.36 E-value=2.8e+02 Score=23.81 Aligned_cols=53 Identities=9% Similarity=0.055 Sum_probs=34.5
Q ss_pred HHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCcc
Q 010734 299 EAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHH 355 (502)
Q Consensus 299 ~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~w 355 (502)
+.+|..|...++ ++.+=+|--++||.-++ .|+-.+.++|.+.|+.-..+.+.|
T Consensus 42 R~~~~~ll~~~~---~~d~lvv~~~dRl~R~~-~e~~~~~~~l~~~gi~l~~~~~~~ 94 (126)
T cd03768 42 RPELQKLLEDLR---EGDTLVVTKLDRLGRST-KDLLEIVEELREKGVSLRSLTEGI 94 (126)
T ss_pred CHHHHHHHHhCc---CCCEEEEEEcchhcCcH-HHHHHHHHHHHHCCCEEEEecCCC
Confidence 456666665554 56555555577898877 567778888999999633333333
No 343
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=22.31 E-value=1.7e+02 Score=33.28 Aligned_cols=63 Identities=22% Similarity=0.267 Sum_probs=38.1
Q ss_pred HHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC------eEEEcCccccCccchhHHHHHHHH
Q 010734 308 HIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF------DAVVCSHHAHGGKGAVDLGIAVQR 371 (502)
Q Consensus 308 HIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~------~~~vs~~wakGGeGa~eLA~~Vv~ 371 (502)
|+..++.+++|+||++|+-.... ++.+.+.+++.+.|.. ...+-..=++=|+|-.+|-+.++.
T Consensus 179 ~i~~~~~~~vPiIVviNKiDl~~-~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 179 AISHAKAANVPIIVAINKIDKPE-ANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred HHHHHHHcCCCEEEEEECccccc-CCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 56667789999999999975421 1223344554444431 011223445678888888877754
No 344
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=22.15 E-value=8e+02 Score=25.23 Aligned_cols=96 Identities=19% Similarity=0.168 Sum_probs=52.4
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccc-cCccch--hHHHHHHHHHhhcCCCCccccCCCCCCHH
Q 010734 315 YGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHA-HGGKGA--VDLGIAVQRACENVTQPLKFLYPLDVSIK 391 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wa-kGGeGa--~eLA~~Vv~a~e~~~~~fk~LY~~~~sI~ 391 (502)
.++|+.|=+..-..+++.+...+.+.+++.|+..+.+..... .|-.|. .++.++|.+.+ +...++.-+-.=.
T Consensus 130 ~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-----~ipvi~nGgI~~~ 204 (319)
T TIGR00737 130 VDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAV-----RIPVIGNGDIFSP 204 (319)
T ss_pred cCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcC-----CCcEEEeCCCCCH
Confidence 579999988753344445555666677889996444432222 232333 33344443332 2344454443222
Q ss_pred HHHHHHHHHhCCCceeeCHHHHHH
Q 010734 392 EKIDTIARSYGASGVEYSEEAEKQ 415 (502)
Q Consensus 392 eKIe~IA~IYGA~~V~fS~~A~kq 415 (502)
+.++..-+-+||+.|.....+...
T Consensus 205 ~da~~~l~~~gad~VmigR~~l~~ 228 (319)
T TIGR00737 205 EDAKAMLETTGCDGVMIGRGALGN 228 (319)
T ss_pred HHHHHHHHhhCCCEEEEChhhhhC
Confidence 334444445789988877666544
No 345
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=22.12 E-value=3.8e+02 Score=27.91 Aligned_cols=44 Identities=20% Similarity=0.093 Sum_probs=30.4
Q ss_pred HHhhHHHHHHHHhh-cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010734 301 GCVNLARHIANTKA-YGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 347 (502)
Q Consensus 301 G~~NL~kHIeNi~~-fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~ 347 (502)
|+.-..++|.-.++ ++.|++|-||. .+.+|+....+.+++.|+.
T Consensus 83 g~~~~~~~i~~~~~~~~~pvi~si~g---~~~~~~~~~a~~~~~~gad 127 (325)
T cd04739 83 GPEEYLELIRRAKRAVSIPVIASLNG---VSAGGWVDYARQIEEAGAD 127 (325)
T ss_pred CHHHHHHHHHHHHhccCCeEEEEeCC---CCHHHHHHHHHHHHhcCCC
Confidence 44444555555544 58999998875 4567877777788888875
No 346
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=22.09 E-value=4.5e+02 Score=27.63 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=30.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCcc
Q 010734 317 ANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHH 355 (502)
Q Consensus 317 vPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~w 355 (502)
+|+.|=|. +..|.+|+..+.+.+++.|+..+.+++.+
T Consensus 212 ~PV~vKls--p~~~~~~~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 212 VPLLVKIA--PDLSDEELDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred CceEEEeC--CCCCHHHHHHHHHHHHHhCCcEEEEeCCc
Confidence 99999999 44666788899999999999877777755
No 347
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=22.07 E-value=1.7e+02 Score=30.43 Aligned_cols=61 Identities=20% Similarity=0.221 Sum_probs=37.8
Q ss_pred hHHHHHHHHhhcCCcEEEEecC-----CCCCCHHH-HHHHHHHH--HHcCCCeEEEcCccccCccchhHHHHHH
Q 010734 304 NLARHIANTKAYGANVVVAVNM-----FATDSKAE-LNAVRNAA--MAAGAFDAVVCSHHAHGGKGAVDLGIAV 369 (502)
Q Consensus 304 NL~kHIeNi~~fGvPvVVAINr-----F~tDT~~E-i~~v~~~c--~~~Gv~~~~vs~~wakGGeGa~eLA~~V 369 (502)
++++=|+.++++|..|++-=|. |-+-|++| .+.+.+.. ..- + ++++| ..||.|+..|-..+
T Consensus 18 ~~~~~i~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~a~~dp-i-~aI~~---~rGGyg~~rlLp~L 86 (305)
T PRK11253 18 AALRGVQRLTDAGHQVENVEVIARRYQRFAGTDGERLADLNSLADLTTP-N-TIVLA---VRGGYGASRLLAGI 86 (305)
T ss_pred HHHHHHHHHHhCCCEEeeccccccccCccCCCHHHHHHHHHHHHhcCCC-c-cEEEE---ecccCCHhHhhhhC
Confidence 3444456667789988877663 32334444 44555543 223 6 46666 68999999988774
No 348
>PRK05660 HemN family oxidoreductase; Provisional
Probab=22.06 E-value=6.2e+02 Score=26.83 Aligned_cols=46 Identities=11% Similarity=-0.046 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 330 SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 330 T~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
|.+++....+.+++.|...+.+.=.+.=-|+.-.++.+.+-.+++-
T Consensus 141 ~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt~~~~~~~l~~~~~l 186 (378)
T PRK05660 141 GPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQSLEEALDDLRQAIAL 186 (378)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhc
Confidence 3444444444555555532223333444455555555444444443
No 349
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=22.05 E-value=5.7e+02 Score=25.72 Aligned_cols=13 Identities=23% Similarity=0.248 Sum_probs=7.1
Q ss_pred hhHHHHHHHHHhh
Q 010734 362 AVDLGIAVQRACE 374 (502)
Q Consensus 362 a~eLA~~Vv~a~e 374 (502)
-.+.+.+|.+.|.
T Consensus 124 ~~~~~~~v~~~~~ 136 (267)
T PRK07226 124 MLEDLGEVAEECE 136 (267)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555666654
No 350
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=21.89 E-value=2.1e+02 Score=29.10 Aligned_cols=96 Identities=22% Similarity=0.217 Sum_probs=57.4
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCC------CCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHH-HHhhcC
Q 010734 304 NLARHIANTKAYGANVVVAVNMFA------TDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQ-RACENV 376 (502)
Q Consensus 304 NL~kHIeNi~~fGvPvVVAINrF~------tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv-~a~e~~ 376 (502)
++++=++.+++.|+.|++.=|-|. ...++=.+.+.+....-.+. +++| ..||.|+.+|-..+- +.+.
T Consensus 15 ~~~~~~~~L~~~G~~v~~~~~~~~~~~~~a~s~~~Ra~dL~~a~~d~~i~-aI~~---~rGG~ga~rlL~~ld~~~~~-- 88 (282)
T cd07025 15 RLERAIARLESLGLEVVVGPHVLARDGYLAGTDEERAADLNAAFADPEIK-AIWC---ARGGYGANRLLPYLDYDLIR-- 88 (282)
T ss_pred HHHHHHHHHHhCCCEEEeccchhhhcCccCCCHHHHHHHHHHHhhCCCCC-EEEE---cCCcCCHHHhhhhCCHHHHh--
Confidence 444445556667999999887543 33444456677777777785 7665 689999998877632 2222
Q ss_pred CCCcccc--CCCCCCHHHHHHHHH--H-HhCCCce
Q 010734 377 TQPLKFL--YPLDVSIKEKIDTIA--R-SYGASGV 406 (502)
Q Consensus 377 ~~~fk~L--Y~~~~sI~eKIe~IA--~-IYGA~~V 406 (502)
.+.|++ |.+-..|--=+-+-+ . +||---.
T Consensus 89 -~~pK~~iGySDiTaL~~~l~~~~g~~t~hGp~~~ 122 (282)
T cd07025 89 -ANPKIFVGYSDITALHLALYAKTGLVTFHGPMLA 122 (282)
T ss_pred -hCCeEEEEecHHHHHHHHHHHhcCceEEECcccc
Confidence 223433 565455555554432 2 6666433
No 351
>PRK12735 elongation factor Tu; Reviewed
Probab=21.86 E-value=3.8e+02 Score=28.56 Aligned_cols=42 Identities=21% Similarity=0.222 Sum_probs=27.5
Q ss_pred hHHHHHHHHhhcCCcEE-EEecCCCCCCHHHH-H----HHHHHHHHcC
Q 010734 304 NLARHIANTKAYGANVV-VAVNMFATDSKAEL-N----AVRNAAMAAG 345 (502)
Q Consensus 304 NL~kHIeNi~~fGvPvV-VAINrF~tDT~~Ei-~----~v~~~c~~~G 345 (502)
...+|+..++.+|+|.+ |++|+...-+++|+ + .++++++..+
T Consensus 115 qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~ 162 (396)
T PRK12735 115 QTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred hHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC
Confidence 35589999999999966 68999765333332 2 3455555544
No 352
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=21.83 E-value=3.3e+02 Score=25.83 Aligned_cols=55 Identities=9% Similarity=-0.014 Sum_probs=36.0
Q ss_pred CCcEEEEecCCCCCC--HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 316 GANVVVAVNMFATDS--KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 316 GvPvVVAINrF~tDT--~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
++|+||+-|+..-.. +-..+.++++|++.+.. +. +.=++=|+|-.++=+.+++.+
T Consensus 110 ~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~-~~--e~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 110 GVPKILVGNRLHLAFKRQVATEQAQAYAERNGMT-FF--EVSPLCNFNITESFTELARIV 166 (189)
T ss_pred CCCEEEEEECccchhccCCCHHHHHHHHHHcCCE-EE--EecCCCCCCHHHHHHHHHHHH
Confidence 799999999976432 11244577888888874 44 334566788777655555443
No 353
>PRK04804 minC septum formation inhibitor; Reviewed
Probab=21.81 E-value=2.3e+02 Score=28.11 Aligned_cols=51 Identities=20% Similarity=0.332 Sum_probs=39.1
Q ss_pred cHHHHHHHHhhHHHHHHHHhhc--CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCe
Q 010734 294 NVALVEAGCVNLARHIANTKAY--GANVVVAVNMFATDSKAELNAVRNAAMAAGAFD 348 (502)
Q Consensus 294 Nl~AL~~G~~NL~kHIeNi~~f--GvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~ 348 (502)
+.+.+. ..|.++++....| |-|+|+-+.... .++.|++.+.+.|++.|...
T Consensus 24 ~~~~l~---~~L~~kl~~a~~Ff~~~~vvld~~~~~-~~~~~~~~L~~~l~~~gl~~ 76 (221)
T PRK04804 24 DLAAVA---AELDEKLAQAPQFFAGAPLVVNLSAIQ-DGDIDFVALKELLESRQLII 76 (221)
T ss_pred CHHHHH---HHHHHHHHhChhhhCCCEEEEEecCcC-CCHHHHHHHHHHHHHCCCEE
Confidence 445554 4778888888874 778888887765 56689999999999999853
No 354
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=21.80 E-value=6.2e+02 Score=23.77 Aligned_cols=56 Identities=7% Similarity=-0.109 Sum_probs=30.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 316 GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 316 GvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
++|++++.|+..-...+......+++++.+.. +. +.-++=|.|-.++-..+.+.+-
T Consensus 113 ~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~--e~Sa~~~~~v~~~f~~ia~~l~ 168 (215)
T PTZ00132 113 NIPIVLVGNKVDVKDRQVKARQITFHRKKNLQ-YY--DISAKSNYNFEKPFLWLARRLT 168 (215)
T ss_pred CCCEEEEEECccCccccCCHHHHHHHHHcCCE-EE--EEeCCCCCCHHHHHHHHHHHHh
Confidence 58999999997543221112223566666763 33 4445555565554444444443
No 355
>COG4195 Phage-related replication protein [General function prediction only]
Probab=21.75 E-value=69 Score=32.07 Aligned_cols=40 Identities=40% Similarity=0.547 Sum_probs=34.4
Q ss_pred ccCchHHHHHHHHHhcCCCCeEEeeccccccccchhccccccccCCCCCCeEE
Q 010734 211 HGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAV 263 (502)
Q Consensus 211 hG~nSviAtk~alkla~~~dyvVTEAGFgaDlGaEKF~dIkcr~~gl~P~a~V 263 (502)
=|.+-..|..++-+| ++|||-|+| .++|-|.+|+.|+-+|
T Consensus 119 GG~dR~~aa~i~~~L--------~~aGF~a~L-----~~~~~~LaG~hpnNi~ 158 (208)
T COG4195 119 GGTDRELAAHIARAL--------QLAGFSAEL-----ANSKHRLAGLHPNNIV 158 (208)
T ss_pred cCccHHHHHHHHHHH--------hhCCccHHh-----hcCCCcCCCCCccccc
Confidence 378889999998887 489999988 5678999999999876
No 356
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.64 E-value=8.1e+02 Score=24.42 Aligned_cols=109 Identities=17% Similarity=0.151 Sum_probs=64.0
Q ss_pred hhcccccHHHHHHHHhhHHHHHHHHhh-c-CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCcc-chhH
Q 010734 288 HAYLNENVALVEAGCVNLARHIANTKA-Y-GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGK-GAVD 364 (502)
Q Consensus 288 ~~l~~eNl~AL~~G~~NL~kHIeNi~~-f-GvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGe-Ga~e 364 (502)
.+.-++|.+++.+=+..|.+-++...+ . +.++|+.=+.| .=+++..|.....+ ...|.+ ++.+
T Consensus 140 ~~~y~~N~~~~~~~L~~l~~~~~~~~~~~~~~~~v~~H~af-----------~Y~~~~ygl~~~~~---~~~~~eps~~~ 205 (266)
T cd01018 140 ATYYQANLDALLAELDALDSEIRTILSKLKQRAFMVYHPAW-----------GYFARDYGLTQIPI---EEEGKEPSPAD 205 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEECchh-----------HHHHHHcCCEEEec---CCCCCCCCHHH
Confidence 455567888888888888888877643 2 34455533333 33566678853322 223433 3556
Q ss_pred HHHHHHHHhhcCCCCccccCCCCCCHHHHHHHHHHHhCCCceeeCHHHH
Q 010734 365 LGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARSYGASGVEYSEEAE 413 (502)
Q Consensus 365 LA~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~IYGA~~V~fS~~A~ 413 (502)
|++. ++.+.+ .+.+.++-....=..-+++||+-.|+.-|.+++...
T Consensus 206 l~~l-~~~ik~--~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~~ 251 (266)
T cd01018 206 LKRL-IDLAKE--KGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLAA 251 (266)
T ss_pred HHHH-HHHHHH--cCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcHH
Confidence 6643 444443 345555544444455677888866887777776653
No 357
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=21.58 E-value=6.6e+02 Score=26.94 Aligned_cols=95 Identities=15% Similarity=0.203 Sum_probs=63.7
Q ss_pred HHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcC----ccccCccchhHHHHHHHHHhhcCCCCcccc
Q 010734 308 HIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCS----HHAHGGKGAVDLGIAVQRACENVTQPLKFL 383 (502)
Q Consensus 308 HIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~----~wakGGeGa~eLA~~Vv~a~e~~~~~fk~L 383 (502)
.++-+.+.|.||++-=..|. |.+|+....+++.+.|..++++|+ .|..-|-.-.+|.- +..+.+ ...+-..
T Consensus 217 LL~~~a~~gkPVilk~G~~~--t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~--i~~lk~-~~~~PV~ 291 (360)
T PRK12595 217 LLKAAGRVNKPVLLKRGLSA--TIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISA--VPILKQ-ETHLPVM 291 (360)
T ss_pred HHHHHHccCCcEEEeCCCCC--CHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHH--HHHHHH-HhCCCEE
Confidence 46667789999999877764 689999999999999998899998 33334566667653 223332 1234567
Q ss_pred CCCCCCHH--HHH--HHHHH-HhCCCcee
Q 010734 384 YPLDVSIK--EKI--DTIAR-SYGASGVE 407 (502)
Q Consensus 384 Y~~~~sI~--eKI--e~IA~-IYGA~~V~ 407 (502)
|+.+.+.- +=+ -.+|- .+||+++.
T Consensus 292 ~d~~Hs~G~r~~~~~~a~aAva~GAdg~~ 320 (360)
T PRK12595 292 VDVTHSTGRRDLLLPTAKAALAIGADGVM 320 (360)
T ss_pred EeCCCCCcchhhHHHHHHHHHHcCCCeEE
Confidence 86666552 223 23334 89998654
No 358
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=21.19 E-value=2.5e+02 Score=32.45 Aligned_cols=67 Identities=16% Similarity=0.049 Sum_probs=41.3
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHH-c-CCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 309 IANTKAYGANVVVAVNMFATDSKAELNAVRNAAMA-A-GAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 309 IeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~-~-Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
++.+...|.|+||++|+..--.+++.+.+.+.... . +...+-+-..=++-|+|-.+|-+.+.++.++
T Consensus 554 ~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 554 MSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred HHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34455679999999999875444444445443332 1 2111111223467889999999988887753
No 359
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=21.14 E-value=3.2e+02 Score=27.25 Aligned_cols=53 Identities=23% Similarity=0.158 Sum_probs=42.5
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccc
Q 010734 304 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHA 356 (502)
Q Consensus 304 NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wa 356 (502)
++.+-++.++..|..+.+.+=.-..-|++++..+.+.+.+.|+..+.+++...
T Consensus 113 ~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G 165 (263)
T cd07943 113 VSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVTDSAG 165 (263)
T ss_pred HHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 67888999999999888877444556788888888888899998777777653
No 360
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=21.10 E-value=5.4e+02 Score=25.88 Aligned_cols=99 Identities=17% Similarity=0.136 Sum_probs=64.4
Q ss_pred HhhHHHHHHHHhhcCCcEEEEecCCC-CCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCc
Q 010734 302 CVNLARHIANTKAYGANVVVAVNMFA-TDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPL 380 (502)
Q Consensus 302 ~~NL~kHIeNi~~fGvPvVVAINrF~-tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~f 380 (502)
..++.+.++.+++.|+.+|+.-=.|. |-+.+|+..+.+.+.+.|+. ++=-=+.++..+-..+|-+...+.-+. . =
T Consensus 111 ~~~~~~l~~~~~~~~~~vI~S~H~F~~TP~~~~l~~~~~~m~~~gaD-i~KiAv~~~~~~Dvl~Ll~~~~~~~~~--~-~ 186 (238)
T PRK13575 111 IEKHQRLITHLQQYNKEVVISHHNFESTPPLDELKFIFFKMQKFNPE-YVKLAVMPHNKNDVLNLLQAMSTFSDT--M-D 186 (238)
T ss_pred hHHHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHHHHHHHhCCC-EEEEEecCCCHHHHHHHHHHHHHHHhc--c-C
Confidence 35566777888889999999877774 34667888888888888863 443345556666566665443332211 1 1
Q ss_pred cccCCCCCCHHHHHHHHHH-HhCCC
Q 010734 381 KFLYPLDVSIKEKIDTIAR-SYGAS 404 (502)
Q Consensus 381 k~LY~~~~sI~eKIe~IA~-IYGA~ 404 (502)
+|+-...|.-.-|+..|+- .||..
T Consensus 187 ~p~i~i~MG~~G~iSRi~~~~~GS~ 211 (238)
T PRK13575 187 CKVVGISMSKLGLISRTAQGVFGGA 211 (238)
T ss_pred CCEEEEeCCCCCchhhcchhhhCCc
Confidence 3444556666678888888 88843
No 361
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=21.07 E-value=4.5e+02 Score=23.60 Aligned_cols=67 Identities=4% Similarity=-0.079 Sum_probs=36.6
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 304 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 304 NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
.+.+.+... +.+.|+++++|+..--.+++++...+..++. .. +.+...=+.=|.|-.+|-+.+.+..
T Consensus 28 ~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~-~~-~~~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 28 HVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSKE-YP-TIAFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred HHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhcC-Cc-EEEEEeeccccccHHHHHHHHHHHH
Confidence 455555543 5679999999998765566664444443332 21 2211122344556666666655443
No 362
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=20.81 E-value=4.1e+02 Score=27.12 Aligned_cols=94 Identities=18% Similarity=0.186 Sum_probs=47.6
Q ss_pred HHHHhh-cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCcccc---CccchhHHHHHHHHHhhcCCCCccccC
Q 010734 309 IANTKA-YGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAH---GGKGAVDLGIAVQRACENVTQPLKFLY 384 (502)
Q Consensus 309 IeNi~~-fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wak---GGeGa~eLA~~Vv~a~e~~~~~fk~LY 384 (502)
|+.+++ +++|++|-.- -|.++ .+.|.+.|+..+.++.+-.. +|-...++-.++.+.+. .+...+-
T Consensus 164 i~~l~~~~~~pvivK~v----~s~~~----a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~---~~ipvia 232 (299)
T cd02809 164 LAWLRSQWKGPLILKGI----LTPED----ALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVG---GRIEVLL 232 (299)
T ss_pred HHHHHHhcCCCEEEeec----CCHHH----HHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhc---CCCeEEE
Confidence 555665 6899998742 33333 35667899976667665322 22233333333333321 1222222
Q ss_pred CCCCCHHHHHHHHHH-HhCCCceeeCHHHHHH
Q 010734 385 PLDVSIKEKIDTIAR-SYGASGVEYSEEAEKQ 415 (502)
Q Consensus 385 ~~~~sI~eKIe~IA~-IYGA~~V~fS~~A~kq 415 (502)
+- -|..--..+.- .+||+.|-........
T Consensus 233 ~G--GI~~~~d~~kal~lGAd~V~ig~~~l~~ 262 (299)
T cd02809 233 DG--GIRRGTDVLKALALGADAVLIGRPFLYG 262 (299)
T ss_pred eC--CCCCHHHHHHHHHcCCCEEEEcHHHHHH
Confidence 21 22222222222 6899998876655443
No 363
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=20.75 E-value=8.8e+02 Score=25.32 Aligned_cols=50 Identities=12% Similarity=-0.025 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCC
Q 010734 329 DSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQ 378 (502)
Q Consensus 329 DT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~ 378 (502)
.|.+++....+.+++.|...+.+.=.+.==|+--.++.+.+-.+.+-++.
T Consensus 133 ~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~ 182 (360)
T TIGR00539 133 HSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKLAKELPIN 182 (360)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHHHHccCCC
Confidence 34566666666777777742333334444466666776666666554443
No 364
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.70 E-value=9e+02 Score=24.85 Aligned_cols=102 Identities=19% Similarity=0.187 Sum_probs=67.2
Q ss_pred HHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCC----CHHHHHHHHHHH-----------HHcCCCeEEEcCccccCc
Q 010734 295 VALVEAGCVNLARHIANTKAYGANVVVAVNMFATD----SKAELNAVRNAA-----------MAAGAFDAVVCSHHAHGG 359 (502)
Q Consensus 295 l~AL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tD----T~~Ei~~v~~~c-----------~~~Gv~~~~vs~~wakGG 359 (502)
.+.=++|+.+|.+=++-...+||+.|-.-- |++| +++|++.|.+++ .+.|++ +-+.--...=.
T Consensus 37 ~~GH~~G~~~l~~i~~~c~~lgI~~lTvYa-FS~eN~~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~ir-i~viGd~~~Lp 114 (249)
T PRK14834 37 AAGHRAGVEALRRVVRAAGELGIGYLTLFA-FSSENWSRPASEVSDLFGLLRLFIRRDLAELHRNGVR-VRVIGERAGLE 114 (249)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCEEEEEE-EeccccCCCHHHHHHHHHHHHHHHHHHHHHHHHCCcE-EEEEcChhhCC
Confidence 467899999999999999999999887553 4444 789999775533 245664 54443333323
Q ss_pred cchhHHHHHHHHHhhcCCCCcc----ccCCCCCCHHHHHHHHHH
Q 010734 360 KGAVDLGIAVQRACENVTQPLK----FLYPLDVSIKEKIDTIAR 399 (502)
Q Consensus 360 eGa~eLA~~Vv~a~e~~~~~fk----~LY~~~~sI~eKIe~IA~ 399 (502)
+--.+..+++.+.... ...+. .-|.-.+.|.+=++++++
T Consensus 115 ~~l~~~i~~~e~~T~~-~~~~~lnla~~Yggr~EI~~A~k~~~~ 157 (249)
T PRK14834 115 ADICALLNEAEELTRN-NTGLNLVIAFNYGSRDEIARAVRRLAR 157 (249)
T ss_pred HHHHHHHHHHHHhhcc-CCceEEEEEeccCCHHHHHHHHHHHHH
Confidence 3333333444444332 22233 779988999999999998
No 365
>PRK00339 minC septum formation inhibitor; Reviewed
Probab=20.65 E-value=3.4e+02 Score=27.60 Aligned_cols=58 Identities=12% Similarity=0.274 Sum_probs=43.0
Q ss_pred cccHHHHHHHHhhHHHHHHHHhhc--CCcEEEEecCCCC-CCHHHHHHHHHHHHHcCCCeEEEc
Q 010734 292 NENVALVEAGCVNLARHIANTKAY--GANVVVAVNMFAT-DSKAELNAVRNAAMAAGAFDAVVC 352 (502)
Q Consensus 292 ~eNl~AL~~G~~NL~kHIeNi~~f--GvPvVVAINrF~t-DT~~Ei~~v~~~c~~~Gv~~~~vs 352 (502)
+.+++.|+. .|.++++....| |.|+|+=+..... +++.|++.+.+.+++.|...+.+.
T Consensus 29 ~~d~~~l~~---~L~~kl~~a~~FF~~~pvvld~~~~~~~~~~~dl~~L~~~l~~~gl~~vgv~ 89 (249)
T PRK00339 29 RNDLDRLDR---QLAAKVAQAPNFFSNTPLVLALDKLPEGEGELDLPGLMRICRRHGLRTLAIR 89 (249)
T ss_pred CCCHHHHHH---HHHHHHHhChhhhCCCeEEEEecccccccchHHHHHHHHHHHHCCCEEEEEE
Confidence 346666664 778888888773 8899888888763 335689999999999998644333
No 366
>COG2313 IndA Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.64 E-value=4.6e+02 Score=27.68 Aligned_cols=105 Identities=21% Similarity=0.287 Sum_probs=71.4
Q ss_pred ccCchHHHHHHHHHhcCCCCeEEeeccccccccchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhc
Q 010734 211 HGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAY 290 (502)
Q Consensus 211 hG~nSviAtk~alkla~~~dyvVTEAGFgaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l 290 (502)
+|.-+|-||-++-.++|= ++++|=-==|--=|||+=|||-.-...|.-.-|++|+. |+..
T Consensus 107 ~gaTTVAaTMi~A~~aGI-~vfaTGGiGGVHrGAe~t~DISaDL~ELa~T~v~vV~A--------GaKs----------- 166 (310)
T COG2313 107 NGATTVAATMILAALAGI-KVFATGGIGGVHRGAEHTFDISADLTELARTNVTVVCA--------GAKS----------- 166 (310)
T ss_pred CCcchHHHHHHHHHHcCc-eEEEecCcccccCCcccccccchhHHHHhcCCeEEEec--------Cchh-----------
Confidence 566689999888888832 45666544577889999999988877777544555543 3321
Q ss_pred ccccHHHHHHHHhhHHHHHHHHhhcCCcEEEE-ecCCCC--------------CCHHHHHHHHHHHHHcCC
Q 010734 291 LNENVALVEAGCVNLARHIANTKAYGANVVVA-VNMFAT--------------DSKAELNAVRNAAMAAGA 346 (502)
Q Consensus 291 ~~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVA-INrF~t--------------DT~~Ei~~v~~~c~~~Gv 346 (502)
+-.+.+-.|-+..+|||+|-- -|.||. ||++||.-+.+--.++|.
T Consensus 167 -----------ILDi~~TlE~LET~gVPvvg~~t~~fPaF~sR~Sg~~~pl~l~~pe~ia~~~~t~~~lgl 226 (310)
T COG2313 167 -----------ILDIGLTLEVLETQGVPVVGYQTNEFPAFFSRESGFRVPLRLESPEEIARILATKWQLGL 226 (310)
T ss_pred -----------hhccHHHHHHHHhcCcceeecCCCcccchhcccCCCcCccccCCHHHHHHHHHHHHHhCC
Confidence 123455678888999999864 344543 788888877665555554
No 367
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=20.51 E-value=3.6e+02 Score=22.73 Aligned_cols=21 Identities=14% Similarity=0.023 Sum_probs=15.3
Q ss_pred hcCCcEEEEecCCCCCCHHHH
Q 010734 314 AYGANVVVAVNMFATDSKAEL 334 (502)
Q Consensus 314 ~fGvPvVVAINrF~tDT~~Ei 334 (502)
..++|++|++|+.......+.
T Consensus 99 ~~~~p~iiv~nK~D~~~~~~~ 119 (159)
T cd04159 99 LEGIPLLVLGNKNDLPGALSV 119 (159)
T ss_pred hcCCCEEEEEeCccccCCcCH
Confidence 368999999999875443333
No 368
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=20.44 E-value=4.6e+02 Score=23.32 Aligned_cols=54 Identities=11% Similarity=-0.038 Sum_probs=31.7
Q ss_pred cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 010734 315 YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 371 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~E--i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~ 371 (502)
-++|++++-|+..-....+ .+...+++++.+.. +..+.. +=|.|-.++=+.+++
T Consensus 104 ~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa--~~~~~v~~~f~~l~~ 159 (161)
T cd04117 104 EGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMD-FFETSA--CTNSNIKESFTRLTE 159 (161)
T ss_pred CCCeEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEeC--CCCCCHHHHHHHHHh
Confidence 4799999999985433222 14455666777764 433332 335776666555543
No 369
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=20.43 E-value=1e+02 Score=29.16 Aligned_cols=31 Identities=19% Similarity=0.081 Sum_probs=19.7
Q ss_pred cccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCC
Q 010734 290 YLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMF 326 (502)
Q Consensus 290 l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAINrF 326 (502)
++.+..+.|.++=. +--.+||.|.|||+|--
T Consensus 88 ~~~~~~~~L~~lN~------~Y~~kFGfpFvi~v~g~ 118 (157)
T TIGR03164 88 LSQEEFARFTRLNN------AYRARFGFPFIMAVKGK 118 (157)
T ss_pred CCHHHHHHHHHHHH------HHHHHCCCeeEEeeCCC
Confidence 34455555555421 23458999999999953
No 370
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=20.42 E-value=5e+02 Score=23.58 Aligned_cols=70 Identities=11% Similarity=-0.041 Sum_probs=42.4
Q ss_pred HhhHHHHHHHHhhcC----CcEEEEecCCCCCCHHHH----HHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 302 CVNLARHIANTKAYG----ANVVVAVNMFATDSKAEL----NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 302 ~~NL~kHIeNi~~fG----vPvVVAINrF~tDT~~Ei----~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
+.++.+.++.+++.. .|++++.|+..-....++ +...+++++.+.. +. +.=++=|+|-.+|-+.+++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~--e~Sa~~g~~v~~lf~~l~~~~ 164 (170)
T cd04108 88 LEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAE-YW--SVSALSGENVREFFFRVAALT 164 (170)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCe-EE--EEECCCCCCHHHHHHHHHHHH
Confidence 345666676654432 568899999764222221 2344667777774 33 333556788888888877766
Q ss_pred h
Q 010734 374 E 374 (502)
Q Consensus 374 e 374 (502)
.
T Consensus 165 ~ 165 (170)
T cd04108 165 F 165 (170)
T ss_pred H
Confidence 4
No 371
>PLN00023 GTP-binding protein; Provisional
Probab=20.26 E-value=2e+02 Score=30.89 Aligned_cols=46 Identities=17% Similarity=0.122 Sum_probs=31.4
Q ss_pred HhhHHHHHHHHhhc---------------CCcEEEEecCCCCCCH--------HHHHHHHHHHHHcCCC
Q 010734 302 CVNLARHIANTKAY---------------GANVVVAVNMFATDSK--------AELNAVRNAAMAAGAF 347 (502)
Q Consensus 302 ~~NL~kHIeNi~~f---------------GvPvVVAINrF~tDT~--------~Ei~~v~~~c~~~Gv~ 347 (502)
+.||.+.++.++.. .+|+|++-|+-.-..+ ...+..++||++.|.-
T Consensus 122 FenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~l 190 (334)
T PLN00023 122 KTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGLL 190 (334)
T ss_pred HHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHHHHHHHHHHcCCC
Confidence 45566656665543 4899999998654332 2467888999998874
No 372
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=20.24 E-value=2.4e+02 Score=29.45 Aligned_cols=97 Identities=15% Similarity=-0.013 Sum_probs=56.4
Q ss_pred EecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCC--ccccC-CCCCCHHHHHHHHH
Q 010734 322 AVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQP--LKFLY-PLDVSIKEKIDTIA 398 (502)
Q Consensus 322 AINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~--fk~LY-~~~~sI~eKIe~IA 398 (502)
.+||- .|.+++....+.+++.|...+.+.=.+.=-|+--.++.+.+-.+.+-++.. +..|. ....++.+++..
T Consensus 126 ~lgR~--~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~L~~~~gT~l~~~~~~-- 201 (350)
T PRK08446 126 FLGRI--HSQKQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKLAKELPINHLSAYSLTIEENTPFFEKNHK-- 201 (350)
T ss_pred HcCCC--CCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeccceecCCChhHHhhhc--
Confidence 45552 457788888888999998544455556556788888888777776655443 22222 223455554432
Q ss_pred HHhCCCceeeCHHHHHHHHHHHHCCCCCCC
Q 010734 399 RSYGASGVEYSEEAEKQIEMYTGQGFSGLP 428 (502)
Q Consensus 399 ~IYGA~~V~fS~~A~kqLk~ie~~Gf~~LP 428 (502)
|.++ ....+.-.+.+++.||.++-
T Consensus 202 ---~~~~---~~~~~~~~~~l~~~Gy~~ye 225 (350)
T PRK08446 202 ---KKDD---ENLAKFFIEQLEELGFKQYE 225 (350)
T ss_pred ---CCCH---HHHHHHHHHHHHHCCCcEEE
Confidence 2121 12233445667888995443
No 373
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=20.23 E-value=8.4e+02 Score=25.19 Aligned_cols=89 Identities=13% Similarity=0.066 Sum_probs=56.2
Q ss_pred cCCcEEEEecCCCC---CCHHHHHHHHH---HHHHcCCCeEEEcCccccCccchhH--HHHHHHHHhhcCCCCccccCCC
Q 010734 315 YGANVVVAVNMFAT---DSKAELNAVRN---AAMAAGAFDAVVCSHHAHGGKGAVD--LGIAVQRACENVTQPLKFLYPL 386 (502)
Q Consensus 315 fGvPvVVAINrF~t---DT~~Ei~~v~~---~c~~~Gv~~~~vs~~wakGGeGa~e--LA~~Vv~a~e~~~~~fk~LY~~ 386 (502)
..+|+.|-|---.. =|++|++..++ .|+++|+..+++ -.-.. +|.+| .-+.+++++..-+-.|+-.+|.
T Consensus 50 ~~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~-G~L~~--dg~vD~~~~~~Li~~a~~~~vTFHRAfD~ 126 (248)
T PRK11572 50 VTIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVRELGFPGLVT-GVLDV--DGHVDMPRMRKIMAAAGPLAVTFHRAFDM 126 (248)
T ss_pred cCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEE-eeECC--CCCcCHHHHHHHHHHhcCCceEEechhhc
Confidence 47999999984322 25688877754 577889975543 22222 33444 4456777775334468889988
Q ss_pred CCCHHHHHHHHHHHhCCCcee
Q 010734 387 DVSIKEKIDTIARSYGASGVE 407 (502)
Q Consensus 387 ~~sI~eKIe~IA~IYGA~~V~ 407 (502)
-....+-++.+... |-+.|=
T Consensus 127 ~~d~~~al~~l~~l-G~~rIL 146 (248)
T PRK11572 127 CANPLNALKQLADL-GVARIL 146 (248)
T ss_pred cCCHHHHHHHHHHc-CCCEEE
Confidence 76666667766653 666554
No 374
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=20.19 E-value=73 Score=32.97 Aligned_cols=90 Identities=12% Similarity=0.144 Sum_probs=0.0
Q ss_pred cCCCCeEEeeccccccccchhccccccccCCCC---CCeEEEEeeehhhhhcCCCCCccCCCCCchhccc--ccHHHHH-
Q 010734 226 VGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLT---PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLN--ENVALVE- 299 (502)
Q Consensus 226 a~~~dyvVTEAGFgaDlGaEKF~dIkcr~~gl~---P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~--eNl~AL~- 299 (502)
| ||.||-.-|.++. .++|++ +||..|+. =-.+.-+++.+.+++..-.+....-..+-+.|.+ ++.++++
T Consensus 177 A---~~~iTQ~~Fd~~~-~~~f~~-~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~l~~~l~~~~d~~~~~~~ 251 (296)
T PRK09432 177 A---NRAITQFFFDVES-YLRFRD-RCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAWMAKMFDGLDDDAETRKL 251 (296)
T ss_pred C---CeeecccccchHH-HHHHHH-HHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHHHHHHHHhcCCCHHHHHH
Q ss_pred HHHhhHHHHHHHHhhcCCcEE
Q 010734 300 AGCVNLARHIANTKAYGANVV 320 (502)
Q Consensus 300 ~G~~NL~kHIeNi~~fGvPvV 320 (502)
.|.+==...|+.+...|+|=|
T Consensus 252 ~Gi~~a~e~i~~L~~~gv~Gv 272 (296)
T PRK09432 252 VGASIAMDMVKILSREGVKDF 272 (296)
T ss_pred HHHHHHHHHHHHHHHCCCCEE
No 375
>smart00422 HTH_MERR helix_turn_helix, mercury resistance.
Probab=20.17 E-value=60 Score=25.25 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=14.4
Q ss_pred CCcCCcchhHHHHHHHHh
Q 010734 49 NKEGERSFSNIMFRRLKK 66 (502)
Q Consensus 49 ~~~g~r~~~~~~~~r~~~ 66 (502)
..+|.|.|+...+.+++.
T Consensus 32 ~~~g~r~y~~~dl~~l~~ 49 (70)
T smart00422 32 TEGGYRLYSDEDLERLRF 49 (70)
T ss_pred CCCCCEecCHHHHHHHHH
Confidence 357889999998888665
No 376
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=20.16 E-value=3.1e+02 Score=29.11 Aligned_cols=98 Identities=20% Similarity=0.194 Sum_probs=62.7
Q ss_pred CCCCeEEeec----cccccccchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHH
Q 010734 227 GPGGFVVTEA----GFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGC 302 (502)
Q Consensus 227 ~~~dyvVTEA----GFgaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~ 302 (502)
.++|+||==- |++.|. ..+.++ .||+.|.+ |++=++=.+|.-. ... +..+-+||.+-|+.=+
T Consensus 128 ~~~d~VvlsGSlP~g~~~d~-y~~li~-~~~~~g~~---vilD~Sg~~L~~~--L~~-------~P~lIKPN~~EL~~~~ 193 (310)
T COG1105 128 ESDDIVVLSGSLPPGVPPDA-YAELIR-ILRQQGAK---VILDTSGEALLAA--LEA-------KPWLIKPNREELEALF 193 (310)
T ss_pred ccCCEEEEeCCCCCCCCHHH-HHHHHH-HHHhcCCe---EEEECChHHHHHH--Hcc-------CCcEEecCHHHHHHHh
Confidence 3458876654 555555 455555 68888766 5555555555421 111 2457788888777633
Q ss_pred hhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhH
Q 010734 303 VNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVD 364 (502)
Q Consensus 303 ~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~e 364 (502)
|+..+..++.++..++ ..+.|+..+++| .|++|+.-
T Consensus 194 ---------------------g~~~~~~~d~i~~a~~-l~~~g~~~ViVS----lG~~Gal~ 229 (310)
T COG1105 194 ---------------------GRELTTLEDVIKAARE-LLAEGIENVIVS----LGADGALL 229 (310)
T ss_pred ---------------------CCCCCChHHHHHHHHH-HHHCCCCEEEEE----ecCcccEE
Confidence 5555666677888888 788999877766 68888765
No 377
>COG2866 Predicted carboxypeptidase [Amino acid transport and metabolism]
Probab=20.14 E-value=47 Score=35.64 Aligned_cols=82 Identities=20% Similarity=0.154 Sum_probs=55.5
Q ss_pred ccccccccchhhH------HHHHHhHHHHHHHh-hhhcccCcChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCC
Q 010734 2 DEFNLHLTGDIHA------ITAANNLLAAAIDT-RIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKP 74 (502)
Q Consensus 2 e~iNLHfTGD~hA------It~A~NLlaA~idn-~i~~~n~~~~~~~~~~l~p~~~~g~r~~~~~~~~r~~~l~~~~~~p 74 (502)
++.+.+|+|..|| ...+-|||.+.+|+ ...+.- -|+ ...-+|| .+||
T Consensus 146 ~~~~i~~~~~~H~~g~~~~~~~~~~li~r~~~~~~~~~~l--ld~-~~~~vvp-----------------------~~Np 199 (374)
T COG2866 146 EHKTILITAGQHARGEKMVEWFLYNLILRYLDPDVQVRKL--LDR-ADLHVVP-----------------------NVNP 199 (374)
T ss_pred ccceeeEecccccCccHHHHHHHHHHHHHhcCccchhhhh--hcc-ccEEEec-----------------------ccCC
Confidence 3567899999996 77889999999998 222211 111 1223566 3455
Q ss_pred CCCCHH------HhhhhccCCCCCCceeeeecccccccccc
Q 010734 75 EDLTPE------EINRFARLDIDPASITWRRVMDVNDRFLR 109 (502)
Q Consensus 75 ~~~~~~------~~~~~~~l~iDp~~I~w~Rv~D~NDR~LR 109 (502)
|-...- +..-+++..|+|.--.|+=++=+||+.+.
T Consensus 200 DG~~~~~lr~na~~~dLnr~~~~~~~~~~~~~~~~~~~~~~ 240 (374)
T COG2866 200 DGSDLGNLRTNANGVDLNRNFIAPNEEEGKEVYRWNDAALE 240 (374)
T ss_pred chhhhcccccccCccchhhhccCCCcccchHHHhhhhhhcc
Confidence 544332 44445566699999999999999999987
No 378
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=20.09 E-value=3.5e+02 Score=30.29 Aligned_cols=122 Identities=18% Similarity=0.141 Sum_probs=68.2
Q ss_pred EEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHH--------------hhHHHHHHHHhhcCCcEEEEecCCC-C
Q 010734 264 IVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGC--------------VNLARHIANTKAYGANVVVAVNMFA-T 328 (502)
Q Consensus 264 lVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~--------------~NL~kHIeNi~~fGvPvVVAINrF~-t 328 (502)
++.|+|. +..||..... ++ +=++.++.++ ..+.+.++.++..|..+|+.-=.|. +
T Consensus 79 lI~T~R~-~~eGG~~~~~------~~---~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~~~~~~~~~~~vI~S~H~f~~t 148 (529)
T PLN02520 79 TLVTYRP-KWEGGQYEGD------EN---KRQDALRLAMELGADYVDVELKVAHEFINSISGKKPEKCKVIVSSHNYENT 148 (529)
T ss_pred EEEEecc-HHHCCCCCCC------HH---HHHHHHHHHHHhCCCEEEEEcCCchhHHHHHHhhhhcCCEEEEEecCCCCC
Confidence 5569996 8899975321 11 1122233322 2456677777778999988766563 3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCCCCHHHHHHHHHH-HhCC
Q 010734 329 DSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-SYGA 403 (502)
Q Consensus 329 DT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~-IYGA 403 (502)
-+.+|+..+.+.+.+.|+. ++=--++++-.+=..+|- ++..+. + +|+=-..|.-.-|+..|+- +||.
T Consensus 149 P~~~el~~~~~~~~~~gaD-i~Kia~~~~~~~D~~~ll----~~~~~~--~-~p~i~~~MG~~G~~sRi~~~~~GS 216 (529)
T PLN02520 149 PSVEELGNLVARIQATGAD-IVKIATTALDITDVARMF----QITVHS--Q-VPTIGLVMGERGLISRILCPKFGG 216 (529)
T ss_pred CCHHHHHHHHHHHHHhCCC-EEEEecCCCCHHHHHHHH----HHHhhc--C-CCEEEEecCCCCchheecccccCC
Confidence 4568888888888888874 443334555543333333 222111 1 1222333444555666666 6554
No 379
>PHA02085 hypothetical protein
Probab=20.06 E-value=30 Score=30.04 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=19.2
Q ss_pred EcccccchhcccCchHHHHHHHHHh
Q 010734 201 VHAGPFANIAHGNSSIVADKIALKL 225 (502)
Q Consensus 201 vHgGPFANIAhG~nSviAtk~alkl 225 (502)
.|-+-||-| |-||++||+.|++.-
T Consensus 9 e~R~~Fa~~-~~~N~~IAe~mGmdw 32 (87)
T PHA02085 9 EHKAMFARR-HDCNQWIADKMGTDW 32 (87)
T ss_pred hHHHHHHhh-chhhHHHHHHhcCCc
Confidence 366778877 679999999999853
No 380
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=20.06 E-value=2.6e+02 Score=27.76 Aligned_cols=48 Identities=21% Similarity=0.171 Sum_probs=35.9
Q ss_pred HHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeE
Q 010734 301 GCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDA 349 (502)
Q Consensus 301 G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~ 349 (502)
-+.+..+-|+++++.|+++++..+. ...+..|++.+.+.+.++|+...
T Consensus 143 ~~~~~~~~i~~~~~~g~~~~~~~~v-~~~n~~~l~~~~~~~~~~g~~~~ 190 (347)
T COG0535 143 VFKRAVEAIKNLKEAGILVVINTTV-TKINYDELPEIADLAAELGVDEL 190 (347)
T ss_pred HHHHHHHHHHHHHHcCCeeeEEEEE-ecCcHHHHHHHHHHHHHcCCCEE
Confidence 3567777888888999984444443 34567899999999999998533
Done!