Query 010734
Match_columns 502
No_of_seqs 209 out of 1049
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 13:08:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010734.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010734hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3do6_A Formate--tetrahydrofola 100.0 2E-219 6E-224 1698.4 38.9 435 1-502 108-543 (543)
2 3pzx_A Formate--tetrahydrofola 100.0 2E-216 6E-221 1684.3 33.9 435 1-502 122-557 (557)
3 2eo2_A Adult MALE hypothalamus 99.9 1.7E-28 5.8E-33 198.5 5.1 70 28-98 2-71 (71)
4 3nav_A Tryptophan synthase alp 86.6 1.5 5.1E-05 43.2 7.6 143 275-431 46-213 (271)
5 2efe_B Small GTP-binding prote 85.5 1.6 5.6E-05 37.0 6.4 69 303-374 101-174 (181)
6 3vni_A Xylose isomerase domain 85.2 10 0.00036 35.3 12.4 135 290-432 75-245 (294)
7 3a1s_A Iron(II) transport prot 82.9 0.84 2.9E-05 43.5 3.8 87 309-400 103-193 (258)
8 3iev_A GTP-binding protein ERA 82.3 4.7 0.00016 39.2 8.9 65 309-376 115-183 (308)
9 3qxb_A Putative xylose isomera 82.1 6.7 0.00023 37.5 9.8 141 291-432 102-286 (316)
10 2gf9_A RAS-related protein RAB 80.4 2.1 7.1E-05 37.2 5.1 69 303-374 111-184 (189)
11 2ekc_A AQ_1548, tryptophan syn 80.2 3.6 0.00012 39.7 7.2 129 289-431 63-211 (262)
12 2ce2_X GTPase HRAS; signaling 80.2 4.8 0.00016 33.0 7.0 57 315-374 107-164 (166)
13 2yc2_C IFT27, small RAB-relate 80.1 3.5 0.00012 35.7 6.5 70 302-374 112-191 (208)
14 2wjg_A FEOB, ferrous iron tran 80.1 0.97 3.3E-05 38.9 2.8 69 305-376 101-170 (188)
15 1ega_A Protein (GTP-binding pr 79.2 9 0.00031 37.1 9.7 64 310-375 110-175 (301)
16 2nzj_A GTP-binding protein REM 78.7 4.9 0.00017 33.7 6.8 69 303-374 94-168 (175)
17 3tkl_A RAS-related protein RAB 78.7 5.2 0.00018 34.4 7.1 69 304-375 106-179 (196)
18 3t1o_A Gliding protein MGLA; G 78.5 4.7 0.00016 34.4 6.7 73 299-374 116-191 (198)
19 2fu5_C RAS-related protein RAB 77.9 4.3 0.00015 34.7 6.3 69 303-374 97-170 (183)
20 3kkq_A RAS-related protein M-R 77.9 8.2 0.00028 32.8 8.0 59 313-374 120-181 (183)
21 2hk0_A D-psicose 3-epimerase; 77.8 13 0.00045 35.2 10.2 132 292-431 96-263 (309)
22 3c5h_A Glucocorticoid receptor 77.8 6.2 0.00021 37.0 7.9 57 315-374 197-254 (255)
23 1g16_A RAS-related protein SEC 77.4 5 0.00017 33.4 6.4 69 304-375 93-165 (170)
24 1kao_A RAP2A; GTP-binding prot 75.7 5.1 0.00018 33.0 6.0 58 314-374 106-165 (167)
25 3iby_A Ferrous iron transport 75.6 2.5 8.6E-05 40.2 4.5 80 310-399 104-184 (256)
26 1ujp_A Tryptophan synthase alp 75.3 1.1 3.6E-05 44.1 1.8 130 289-432 61-208 (271)
27 3q72_A GTP-binding protein RAD 75.3 7.5 0.00026 32.4 6.9 69 303-374 89-163 (166)
28 1z0f_A RAB14, member RAS oncog 75.3 5.9 0.0002 33.2 6.3 66 305-373 109-176 (179)
29 3con_A GTPase NRAS; structural 75.1 7 0.00024 33.6 6.9 58 315-375 125-183 (190)
30 3c5c_A RAS-like protein 12; GD 75.0 3.1 0.00011 36.4 4.7 57 315-374 126-185 (187)
31 3bc1_A RAS-related protein RAB 74.9 5.1 0.00017 34.0 5.9 68 304-374 111-184 (195)
32 1z06_A RAS-related protein RAB 74.9 4.3 0.00015 35.1 5.5 60 314-373 125-186 (189)
33 3clv_A RAB5 protein, putative; 74.8 8.7 0.0003 32.6 7.3 69 303-374 133-203 (208)
34 1ub3_A Aldolase protein; schif 74.6 13 0.00045 35.4 9.2 81 259-364 85-165 (220)
35 1qop_A Tryptophan synthase alp 74.4 9.2 0.00032 36.8 8.2 126 292-431 66-210 (268)
36 1s0u_A EIF-2-gamma, translatio 74.3 6.9 0.00023 39.5 7.6 100 243-375 90-198 (408)
37 3kws_A Putative sugar isomeras 74.2 27 0.00091 32.5 11.1 106 291-399 92-218 (287)
38 2g6b_A RAS-related protein RAB 74.0 9 0.00031 32.3 7.2 59 314-375 114-174 (180)
39 2obn_A Hypothetical protein; s 74.0 4.7 0.00016 41.3 6.3 95 255-370 250-347 (349)
40 2a9k_A RAS-related protein RAL 73.2 5.5 0.00019 33.7 5.6 57 315-374 122-180 (187)
41 2atx_A Small GTP binding prote 72.8 15 0.00052 31.7 8.5 65 307-373 111-191 (194)
42 1c1y_A RAS-related protein RAP 72.6 9.9 0.00034 31.4 7.0 56 315-373 107-165 (167)
43 2qw5_A Xylose isomerase-like T 72.5 9.6 0.00033 36.7 7.8 156 251-431 73-280 (335)
44 2bov_A RAla, RAS-related prote 72.3 9.3 0.00032 33.1 7.0 57 315-374 118-176 (206)
45 3tva_A Xylose isomerase domain 72.2 9.4 0.00032 35.6 7.5 95 297-399 96-205 (290)
46 1r5b_A Eukaryotic peptide chai 72.1 8.5 0.00029 39.9 7.8 95 243-364 130-241 (467)
47 2a5j_A RAS-related protein RAB 71.9 6.9 0.00024 34.0 6.1 69 303-374 110-183 (191)
48 2y8e_A RAB-protein 6, GH09086P 71.2 5.4 0.00018 33.5 5.1 57 314-373 117-175 (179)
49 3bdk_A D-mannonate dehydratase 71.2 7.2 0.00025 40.1 7.0 25 298-322 99-123 (386)
50 3q85_A GTP-binding protein REM 70.9 8.2 0.00028 32.2 6.2 71 302-375 91-167 (169)
51 1jny_A EF-1-alpha, elongation 70.9 5 0.00017 41.0 5.7 95 243-363 93-201 (435)
52 1r2q_A RAS-related protein RAB 70.7 4.3 0.00015 33.7 4.3 68 303-373 95-167 (170)
53 2fg5_A RAB-22B, RAS-related pr 70.7 4.1 0.00014 35.5 4.4 69 304-375 113-186 (192)
54 3cph_A RAS-related protein SEC 70.5 8 0.00027 33.8 6.2 68 304-374 110-181 (213)
55 1z08_A RAS-related protein RAB 70.5 6 0.00021 33.0 5.2 57 314-373 109-167 (170)
56 3sjy_A Translation initiation 70.0 13 0.00044 37.5 8.4 69 303-374 115-191 (403)
57 2bcg_Y Protein YP2, GTP-bindin 69.9 8.7 0.0003 33.7 6.4 59 313-374 110-170 (206)
58 1x3s_A RAS-related protein RAB 69.9 18 0.0006 30.9 8.2 70 303-375 104-178 (195)
59 2f7s_A C25KG, RAS-related prot 69.5 10 0.00035 33.5 6.7 70 302-374 123-198 (217)
60 3j2k_7 ERF3, eukaryotic polype 69.3 11 0.00036 38.8 7.8 97 243-366 104-216 (439)
61 3pqc_A Probable GTP-binding pr 69.2 13 0.00045 31.6 7.2 63 310-374 127-193 (195)
62 2e87_A Hypothetical protein PH 68.8 22 0.00074 35.1 9.6 57 316-375 280-336 (357)
63 3c8f_A Pyruvate formate-lyase 68.7 18 0.00061 32.4 8.3 56 304-359 148-206 (245)
64 3cpj_B GTP-binding protein YPT 68.7 4.8 0.00016 36.2 4.5 69 304-375 103-176 (223)
65 1u8z_A RAS-related protein RAL 68.3 8 0.00028 31.8 5.5 57 315-374 108-166 (168)
66 3can_A Pyruvate-formate lyase- 67.4 13 0.00043 32.8 6.9 56 304-359 80-139 (182)
67 3ug7_A Arsenical pump-driving 67.3 12 0.00042 37.1 7.6 84 303-397 252-346 (349)
68 4dhe_A Probable GTP-binding pr 67.3 19 0.00066 31.7 8.1 66 309-375 137-211 (223)
69 1zbd_A Rabphilin-3A; G protein 67.2 9 0.00031 33.4 5.9 68 304-374 98-170 (203)
70 1i60_A IOLI protein; beta barr 67.0 23 0.0008 32.2 8.8 90 294-386 75-175 (278)
71 3lmz_A Putative sugar isomeras 66.7 5.6 0.00019 36.8 4.6 121 302-431 88-230 (257)
72 2x7v_A Probable endonuclease 4 66.2 17 0.00057 33.6 7.8 115 251-385 55-178 (287)
73 1z0j_A RAB-22, RAS-related pro 66.2 13 0.00044 30.8 6.4 57 314-373 109-167 (170)
74 2gco_A H9, RHO-related GTP-bin 65.9 22 0.00076 31.1 8.2 65 307-373 118-198 (201)
75 3t5g_A GTP-binding protein RHE 65.8 9.7 0.00033 32.3 5.7 60 313-375 108-169 (181)
76 2il1_A RAB12; G-protein, GDP, 65.8 8.1 0.00028 33.7 5.3 63 309-374 124-189 (192)
77 2j0v_A RAC-like GTP-binding pr 65.7 11 0.00038 33.1 6.2 67 307-375 102-180 (212)
78 2fn4_A P23, RAS-related protei 65.4 8.8 0.0003 32.2 5.2 60 313-375 111-172 (181)
79 2whl_A Beta-mannanase, baman5; 65.2 18 0.00061 34.4 7.9 56 305-361 33-92 (294)
80 3dz8_A RAS-related protein RAB 65.1 11 0.00039 32.6 6.0 58 315-375 127-186 (191)
81 1qtw_A Endonuclease IV; DNA re 65.1 33 0.0011 31.6 9.5 94 291-386 77-180 (285)
82 1z2a_A RAS-related protein RAB 64.3 10 0.00035 31.4 5.3 68 304-374 95-166 (168)
83 2oil_A CATX-8, RAS-related pro 64.2 12 0.00039 32.4 5.9 69 303-374 114-187 (193)
84 2yv5_A YJEQ protein; hydrolase 63.9 15 0.00053 35.6 7.3 61 304-367 98-161 (302)
85 3k53_A Ferrous iron transport 63.7 19 0.00067 33.7 7.8 87 312-403 104-195 (271)
86 2elf_A Protein translation elo 63.5 12 0.00042 37.7 6.7 70 304-374 99-179 (370)
87 2o52_A RAS-related protein RAB 63.4 8.3 0.00029 34.0 4.9 59 313-374 127-187 (200)
88 3b1v_A Ferrous iron uptake tra 62.7 4.8 0.00016 38.8 3.4 84 310-400 101-189 (272)
89 1lnz_A SPO0B-associated GTP-bi 62.5 22 0.00076 35.6 8.4 69 315-388 273-341 (342)
90 3i8s_A Ferrous iron transport 62.1 2.9 9.8E-05 40.0 1.7 85 309-399 105-190 (274)
91 1wms_A RAB-9, RAB9, RAS-relate 61.9 34 0.0012 28.6 8.3 58 314-374 114-173 (177)
92 1zj6_A ADP-ribosylation factor 61.9 17 0.00059 31.2 6.6 58 315-375 116-178 (187)
93 2hxs_A RAB-26, RAS-related pro 61.8 11 0.00039 31.6 5.3 57 316-375 114-173 (178)
94 3tha_A Tryptophan synthase alp 61.8 11 0.00037 36.9 5.8 130 289-432 60-205 (252)
95 3ayv_A Putative uncharacterize 61.6 46 0.0016 30.3 9.7 89 290-386 63-163 (254)
96 3tw8_B RAS-related protein RAB 61.5 17 0.00057 30.4 6.3 67 305-374 100-170 (181)
97 2hup_A RAS-related protein RAB 61.4 22 0.00075 31.3 7.3 71 303-375 118-193 (201)
98 3cbq_A GTP-binding protein REM 61.4 16 0.00055 32.2 6.4 70 303-375 113-188 (195)
99 4djt_A GTP-binding nuclear pro 60.7 18 0.00062 31.9 6.6 64 309-375 110-175 (218)
100 3ihw_A Centg3; RAS, centaurin, 60.5 22 0.00075 31.0 7.0 71 302-374 101-179 (184)
101 3vnd_A TSA, tryptophan synthas 60.1 45 0.0015 32.6 9.9 143 275-431 44-211 (267)
102 2erx_A GTP-binding protein DI- 59.9 7.7 0.00026 32.2 3.8 58 315-375 108-167 (172)
103 2atv_A RERG, RAS-like estrogen 59.8 10 0.00035 33.0 4.8 57 315-374 131-190 (196)
104 2h57_A ADP-ribosylation factor 59.7 24 0.00081 30.4 7.1 57 315-374 125-186 (190)
105 4dsu_A GTPase KRAS, isoform 2B 59.6 23 0.0008 29.8 6.9 59 314-375 107-166 (189)
106 2p5s_A RAS and EF-hand domain 59.3 16 0.00054 32.0 5.9 62 310-374 127-196 (199)
107 2zej_A Dardarin, leucine-rich 59.0 16 0.00054 31.6 5.9 73 303-375 97-178 (184)
108 3cqj_A L-ribulose-5-phosphate 58.6 59 0.002 30.3 10.1 104 292-399 97-216 (295)
109 2bme_A RAB4A, RAS-related prot 58.2 10 0.00035 32.2 4.4 64 308-374 107-172 (186)
110 1u0l_A Probable GTPase ENGC; p 58.0 25 0.00087 34.0 7.7 61 304-367 103-165 (301)
111 3gj0_A GTP-binding nuclear pro 58.0 7 0.00024 34.9 3.4 71 303-376 104-176 (221)
112 3obe_A Sugar phosphate isomera 57.8 24 0.00081 33.9 7.4 56 299-356 110-173 (305)
113 3oes_A GTPase rhebl1; small GT 57.5 13 0.00045 32.5 5.1 58 315-375 128-187 (201)
114 4bas_A ADP-ribosylation factor 57.2 37 0.0013 29.0 7.9 57 316-375 127-189 (199)
115 1mh1_A RAC1; GTP-binding, GTPa 57.0 25 0.00087 29.5 6.7 65 309-375 100-180 (186)
116 1wb1_A Translation elongation 56.9 15 0.00051 38.3 6.2 66 306-374 115-188 (482)
117 3ngj_A Deoxyribose-phosphate a 56.9 11 0.00038 36.7 4.9 80 259-363 109-188 (239)
118 3fst_A 5,10-methylenetetrahydr 56.8 7.8 0.00027 38.7 3.9 114 220-347 168-293 (304)
119 3avx_A Elongation factor TS, e 56.7 33 0.0011 40.8 9.5 100 243-373 368-484 (1289)
120 1ky3_A GTP-binding protein YPT 56.6 41 0.0014 28.0 7.9 58 314-374 116-177 (182)
121 1tz9_A Mannonate dehydratase; 56.2 16 0.00056 36.1 6.1 29 298-327 90-118 (367)
122 2qul_A D-tagatose 3-epimerase; 55.3 38 0.0013 31.2 8.1 132 292-431 77-245 (290)
123 3bwd_D RAC-like GTP-binding pr 55.2 16 0.00055 30.8 5.1 56 316-373 112-179 (182)
124 3r7w_A Gtpase1, GTP-binding pr 55.1 30 0.001 33.4 7.7 80 307-399 104-195 (307)
125 2cxx_A Probable GTP-binding pr 54.9 17 0.00057 30.9 5.2 66 309-375 115-184 (190)
126 2iwr_A Centaurin gamma 1; ANK 53.7 35 0.0012 28.7 7.0 63 309-374 98-168 (178)
127 3izq_1 HBS1P, elongation facto 53.3 33 0.0011 37.1 8.3 97 243-365 254-362 (611)
128 2gf0_A GTP-binding protein DI- 53.1 19 0.00064 30.9 5.3 58 315-375 113-171 (199)
129 3qc0_A Sugar isomerase; TIM ba 53.1 77 0.0026 28.8 9.7 102 293-398 73-195 (275)
130 2ew1_A RAS-related protein RAB 53.0 16 0.00054 32.7 4.9 59 313-374 128-188 (201)
131 3qq5_A Small GTP-binding prote 52.7 11 0.00037 39.1 4.2 67 306-375 130-196 (423)
132 2wji_A Ferrous iron transport 52.5 7.4 0.00025 33.1 2.5 62 309-373 101-163 (165)
133 1ek0_A Protein (GTP-binding pr 52.5 15 0.00051 30.3 4.4 57 314-373 106-167 (170)
134 1m7b_A RND3/RHOE small GTP-bin 52.4 21 0.00073 30.6 5.5 56 316-373 111-181 (184)
135 1wky_A Endo-beta-1,4-mannanase 52.3 37 0.0013 35.2 8.3 57 305-362 41-101 (464)
136 2fv8_A H6, RHO-related GTP-bin 52.0 31 0.0011 30.3 6.7 65 308-374 119-199 (207)
137 1geq_A Tryptophan synthase alp 51.9 49 0.0017 30.6 8.3 125 293-432 54-197 (248)
138 1rd5_A Tryptophan synthase alp 51.7 34 0.0012 32.3 7.3 123 294-431 69-206 (262)
139 4gzl_A RAS-related C3 botulinu 51.6 16 0.00056 32.2 4.8 64 307-372 123-202 (204)
140 3u0h_A Xylose isomerase domain 51.6 36 0.0012 31.1 7.2 85 297-385 78-179 (281)
141 2j1l_A RHO-related GTP-binding 51.3 35 0.0012 30.3 7.0 66 308-375 128-209 (214)
142 2q02_A Putative cytoplasmic pr 51.2 69 0.0023 29.1 9.1 80 303-386 85-171 (272)
143 2dyk_A GTP-binding protein; GT 51.1 8.9 0.00031 31.6 2.8 57 312-373 104-160 (161)
144 2c78_A Elongation factor TU-A; 50.9 34 0.0012 34.3 7.5 43 304-346 115-163 (405)
145 3l0i_B RAS-related protein RAB 50.8 4.8 0.00016 35.3 1.1 69 303-374 122-195 (199)
146 3ea0_A ATPase, para family; al 50.7 52 0.0018 29.5 8.1 122 229-402 119-244 (245)
147 3t5d_A Septin-7; GTP-binding p 50.2 20 0.00069 33.8 5.4 59 311-373 140-202 (274)
148 1bqc_A Protein (beta-mannanase 49.9 28 0.00096 33.1 6.4 52 307-359 36-91 (302)
149 3oix_A Putative dihydroorotate 49.9 1.4E+02 0.0047 30.1 11.8 101 301-407 111-222 (345)
150 1svi_A GTP-binding protein YSX 49.8 33 0.0011 29.3 6.3 61 311-374 129-194 (195)
151 3reg_A RHO-like small GTPase; 49.6 31 0.0011 29.7 6.2 66 308-375 117-188 (194)
152 2nx9_A Oxaloacetate decarboxyl 49.5 62 0.0021 34.2 9.4 52 303-355 127-181 (464)
153 1vg8_A RAS-related protein RAB 49.2 40 0.0014 29.1 6.8 58 315-375 116-175 (207)
154 3dx5_A Uncharacterized protein 48.3 83 0.0028 29.0 9.2 84 299-386 80-173 (286)
155 4dkx_A RAS-related protein RAB 48.3 43 0.0015 30.8 7.2 70 302-374 101-175 (216)
156 3cny_A Inositol catabolism pro 48.1 92 0.0032 28.7 9.5 86 297-386 84-191 (301)
157 2qag_A Septin-2, protein NEDD5 48.1 14 0.00049 36.9 4.2 59 315-373 173-235 (361)
158 3hp4_A GDSL-esterase; psychrot 47.7 1.3E+02 0.0043 25.4 10.6 107 214-347 25-139 (185)
159 1qwg_A PSL synthase;, (2R)-pho 46.7 65 0.0022 31.7 8.5 94 305-409 57-168 (251)
160 1ksh_A ARF-like protein 2; sma 46.7 38 0.0013 28.8 6.2 58 315-375 118-180 (186)
161 3lxx_A GTPase IMAP family memb 46.5 36 0.0012 30.9 6.4 60 315-375 144-214 (239)
162 4ef8_A Dihydroorotate dehydrog 46.5 1.9E+02 0.0064 29.3 12.2 123 302-432 111-283 (354)
163 3hut_A Putative branched-chain 46.1 1.5E+02 0.005 27.8 10.7 118 309-431 89-225 (358)
164 4ad1_A Glycosyl hydrolase fami 45.4 36 0.0012 34.8 6.8 68 303-374 104-175 (380)
165 1vi1_A Fatty acid/phospholipid 45.3 4.7 0.00016 40.8 0.2 26 201-226 280-312 (345)
166 1gwn_A RHO-related GTP-binding 45.0 31 0.001 30.8 5.5 56 316-373 132-202 (205)
167 1f76_A Dihydroorotate dehydrog 44.9 92 0.0032 30.4 9.4 92 316-414 211-323 (336)
168 3p6l_A Sugar phosphate isomera 44.8 27 0.00092 32.0 5.2 74 303-385 91-164 (262)
169 1yrb_A ATP(GTP)binding protein 43.9 39 0.0013 30.8 6.1 62 312-375 167-257 (262)
170 3fst_A 5,10-methylenetetrahydr 43.1 2.6E+02 0.0089 27.7 14.4 157 243-430 37-208 (304)
171 1g7s_A Translation initiation 43.1 1.7E+02 0.0057 31.6 11.8 66 309-374 115-217 (594)
172 3aal_A Probable endonuclease 4 43.1 79 0.0027 29.8 8.3 93 291-385 81-183 (303)
173 2zds_A Putative DNA-binding pr 42.3 1.3E+02 0.0044 28.3 9.7 100 297-399 105-230 (340)
174 2lkc_A Translation initiation 42.3 79 0.0027 26.3 7.4 64 309-375 100-171 (178)
175 1kk1_A EIF2gamma; initiation o 42.3 45 0.0015 33.5 6.8 67 305-374 125-199 (410)
176 1vcv_A Probable deoxyribose-ph 41.7 26 0.00089 33.7 4.7 73 259-356 80-152 (226)
177 1mzh_A Deoxyribose-phosphate a 41.0 1E+02 0.0035 28.8 8.7 102 309-418 108-215 (225)
178 1ydn_A Hydroxymethylglutaryl-C 40.5 1E+02 0.0035 29.7 8.8 103 301-409 118-231 (295)
179 1moz_A ARL1, ADP-ribosylation 40.3 44 0.0015 28.1 5.5 71 304-374 103-179 (183)
180 1d2e_A Elongation factor TU (E 40.1 43 0.0015 33.6 6.3 71 304-374 106-194 (397)
181 4eyg_A Twin-arginine transloca 39.9 1.5E+02 0.0052 27.7 9.8 119 309-431 89-228 (368)
182 1r8s_A ADP-ribosylation factor 39.6 47 0.0016 27.3 5.5 57 315-374 100-161 (164)
183 1f6b_A SAR1; gtpases, N-termin 39.6 38 0.0013 29.8 5.2 57 315-371 125-195 (198)
184 2q3h_A RAS homolog gene family 39.3 58 0.002 28.0 6.3 57 316-374 124-194 (201)
185 3cwq_A Para family chromosome 39.2 1.1E+02 0.0037 27.6 8.3 82 228-347 67-151 (209)
186 1k77_A EC1530, hypothetical pr 39.2 87 0.003 28.3 7.7 127 298-431 80-239 (260)
187 2wkq_A NPH1-1, RAS-related C3 39.1 53 0.0018 30.7 6.4 64 309-374 250-329 (332)
188 2zvr_A Uncharacterized protein 39.1 1.5E+02 0.0051 27.5 9.5 105 292-399 102-222 (290)
189 1dos_A Aldolase class II; lyas 39.0 1.3E+02 0.0045 30.8 9.7 100 263-374 56-165 (358)
190 3tr5_A RF-3, peptide chain rel 38.9 39 0.0013 35.8 6.0 41 307-347 125-165 (528)
191 2qu8_A Putative nucleolar GTP- 38.9 1.7E+02 0.0058 26.0 9.5 66 309-375 133-205 (228)
192 3apt_A Methylenetetrahydrofola 38.8 26 0.00088 34.8 4.4 103 230-346 175-289 (310)
193 3l23_A Sugar phosphate isomera 38.8 1.1E+02 0.0039 29.0 8.8 55 299-355 104-168 (303)
194 1yx1_A Hypothetical protein PA 38.5 59 0.002 29.9 6.5 80 303-386 84-164 (264)
195 1p9l_A Dihydrodipicolinate red 38.3 58 0.002 31.3 6.6 59 305-367 58-117 (245)
196 4dcu_A GTP-binding protein ENG 38.0 56 0.0019 33.3 6.8 66 307-375 297-369 (456)
197 3q3j_B RHO-related GTP-binding 37.8 37 0.0013 30.3 4.9 67 307-375 120-203 (214)
198 2eh6_A Acoat, acetylornithine 37.4 81 0.0028 29.8 7.5 27 329-356 190-216 (375)
199 3dpu_A RAB family protein; roc 37.3 35 0.0012 35.5 5.3 70 304-376 136-209 (535)
200 3ez9_A Para; DNA binding, wing 37.2 84 0.0029 31.3 7.9 89 228-347 247-340 (403)
201 3ghf_A Septum site-determining 36.0 37 0.0013 29.4 4.4 56 292-352 24-81 (120)
202 1upt_A ARL1, ADP-ribosylation 36.0 93 0.0032 25.6 6.8 58 315-375 107-169 (171)
203 3ngf_A AP endonuclease, family 34.5 1.5E+02 0.005 27.3 8.5 84 298-385 88-185 (269)
204 3vzx_A Heptaprenylglyceryl pho 34.2 1.1E+02 0.0038 29.4 7.8 108 305-421 94-220 (228)
205 2cjw_A GTP-binding protein GEM 34.0 79 0.0027 27.6 6.3 57 315-374 113-171 (192)
206 3ll9_A Isopentenyl phosphate k 33.6 14 0.00046 35.8 1.3 14 196-209 42-56 (269)
207 1udx_A The GTP-binding protein 33.5 2.1E+02 0.0071 29.5 10.3 76 296-376 251-326 (416)
208 3lxw_A GTPase IMAP family memb 33.4 63 0.0022 30.0 5.9 60 315-375 138-208 (247)
209 2afh_E Nitrogenase iron protei 33.0 1.6E+02 0.0054 27.5 8.6 115 301-431 160-278 (289)
210 2x77_A ADP-ribosylation factor 32.9 82 0.0028 26.8 6.1 58 315-375 122-184 (189)
211 2g3y_A GTP-binding protein GEM 32.8 69 0.0023 29.2 5.9 57 315-374 144-202 (211)
212 3rjz_A N-type ATP pyrophosphat 32.7 45 0.0015 32.2 4.8 132 312-451 24-163 (237)
213 2lf6_A Effector protein hopab1 32.2 43 0.0015 28.8 4.0 39 22-80 40-78 (101)
214 1xla_A D-xylose isomerase; iso 31.7 1.5E+02 0.0052 29.5 8.7 105 291-397 104-234 (394)
215 1hyq_A MIND, cell division inh 31.5 1.2E+02 0.0043 27.5 7.5 80 309-403 154-235 (263)
216 3jug_A Beta-mannanase; TIM-bar 30.8 1.3E+02 0.0046 30.0 8.1 55 306-361 57-115 (345)
217 3end_A Light-independent proto 30.7 3.4E+02 0.012 25.4 16.4 83 304-406 199-289 (307)
218 3r12_A Deoxyribose-phosphate a 30.6 1.1E+02 0.0037 30.2 7.2 80 259-363 125-204 (260)
219 1tv8_A MOAA, molybdenum cofact 30.2 79 0.0027 30.6 6.2 50 303-353 146-195 (340)
220 1pui_A ENGB, probable GTP-bind 30.0 1.7E+02 0.0059 25.2 7.8 63 312-375 133-199 (210)
221 2b6h_A ADP-ribosylation factor 29.9 85 0.0029 27.2 5.8 57 315-374 129-190 (192)
222 1u83_A Phosphosulfolactate syn 29.6 95 0.0032 31.0 6.6 94 305-410 82-193 (276)
223 1w8s_A FBP aldolase, fructose- 29.4 1.6E+02 0.0054 28.3 8.1 91 309-409 131-231 (263)
224 2h17_A ADP-ribosylation factor 29.2 69 0.0024 27.2 5.0 55 314-371 120-179 (181)
225 1jwy_B Dynamin A GTPase domain 29.1 53 0.0018 30.9 4.6 67 310-376 192-263 (315)
226 3llu_A RAS-related GTP-binding 28.9 1.1E+02 0.0038 26.5 6.3 66 302-371 113-193 (196)
227 4djd_C C/Fe-SP, corrinoid/iron 28.9 1.3E+02 0.0045 31.9 7.9 42 303-349 188-229 (446)
228 2ki0_A DS119; beta-alpha-beta, 28.7 50 0.0017 23.2 3.1 22 326-347 9-30 (36)
229 1zd9_A ADP-ribosylation factor 28.6 75 0.0026 27.3 5.1 57 315-374 123-184 (188)
230 1wf3_A GTP-binding protein; GT 28.5 1.5E+02 0.0051 28.6 7.8 62 310-375 109-173 (301)
231 3aam_A Endonuclease IV, endoiv 28.5 1.2E+02 0.004 27.8 6.7 85 294-385 79-169 (270)
232 1m2o_B GTP-binding protein SAR 28.4 65 0.0022 28.0 4.8 57 314-370 122-187 (190)
233 2r32_A GCN4-PII/tumor necrosis 28.4 70 0.0024 29.6 5.0 41 389-439 11-56 (166)
234 4dzz_A Plasmid partitioning pr 28.2 56 0.0019 28.4 4.3 85 227-347 74-160 (206)
235 3ndo_A Deoxyribose-phosphate a 27.7 78 0.0027 30.6 5.5 80 259-362 94-177 (231)
236 2rcn_A Probable GTPase ENGC; Y 27.6 1.2E+02 0.0041 30.8 7.1 60 305-367 149-211 (358)
237 1f60_A Elongation factor EEF1A 27.5 62 0.0021 33.3 5.1 57 304-362 132-199 (458)
238 3tl8_B Effector protein hopab2 27.3 62 0.0021 28.4 4.2 39 22-80 57-95 (117)
239 3apt_A Methylenetetrahydrofola 27.2 4.6E+02 0.016 25.8 11.3 155 241-430 25-205 (310)
240 4acy_A Endo-alpha-mannosidase; 27.2 80 0.0027 32.5 5.8 69 303-375 103-174 (382)
241 3bg3_A Pyruvate carboxylase, m 27.0 1.4E+02 0.0047 33.4 8.0 103 302-407 223-335 (718)
242 1muw_A Xylose isomerase; atomi 26.9 2E+02 0.0069 28.4 8.6 105 292-398 105-235 (386)
243 3sg0_A Extracellular ligand-bi 26.9 3E+02 0.01 25.7 9.4 116 309-429 106-243 (386)
244 1sfl_A 3-dehydroquinate dehydr 26.3 1.9E+02 0.0065 27.4 7.9 127 264-404 65-211 (238)
245 2cw6_A Hydroxymethylglutaryl-C 26.0 1.7E+02 0.0059 28.3 7.7 105 298-408 116-231 (298)
246 2yr1_A 3-dehydroquinate dehydr 25.7 2.8E+02 0.0095 26.6 9.1 131 264-404 81-225 (257)
247 1g3q_A MIND ATPase, cell divis 25.6 99 0.0034 27.6 5.6 122 228-401 111-234 (237)
248 3o1n_A 3-dehydroquinate dehydr 25.6 2.8E+02 0.0096 27.0 9.2 136 264-409 101-250 (276)
249 1u7n_A Fatty acid/phospholipid 25.4 13 0.00046 37.2 -0.3 26 201-226 283-315 (336)
250 4evq_A Putative ABC transporte 25.3 4.2E+02 0.014 24.7 13.0 118 309-431 99-237 (375)
251 3oam_A 3-deoxy-manno-octuloson 25.2 3.5E+02 0.012 25.0 9.5 86 301-399 26-114 (252)
252 1byi_A Dethiobiotin synthase; 25.0 1.2E+02 0.004 26.9 5.9 45 303-347 153-198 (224)
253 1viz_A PCRB protein homolog; s 24.5 2.5E+02 0.0087 26.9 8.5 103 306-417 97-218 (240)
254 4h3d_A 3-dehydroquinate dehydr 24.3 1.1E+02 0.0038 29.5 5.9 135 264-408 81-229 (258)
255 3th5_A RAS-related C3 botulinu 29.9 16 0.00056 31.9 0.0 13 316-328 134-146 (204)
256 2hbv_A 2-amino-3-carboxymucona 24.0 4.7E+02 0.016 24.8 11.1 21 409-432 157-177 (334)
257 3mil_A Isoamyl acetate-hydroly 23.8 3E+02 0.01 23.9 8.3 71 303-375 100-209 (240)
258 1fzq_A ADP-ribosylation factor 23.7 1.1E+02 0.0037 26.2 5.2 57 315-374 116-177 (181)
259 3cjp_A Predicted amidohydrolas 23.6 4.2E+02 0.014 24.1 10.0 21 306-326 16-36 (272)
260 2ywe_A GTP-binding protein LEP 23.5 71 0.0024 34.7 4.8 67 308-374 117-183 (600)
261 1puj_A YLQF, conserved hypothe 23.4 1.4E+02 0.0048 28.7 6.5 57 315-374 49-105 (282)
262 2lf3_A Effector protein hopab3 23.4 70 0.0024 27.7 3.7 39 22-80 51-90 (107)
263 2wsm_A Hydrogenase expression/ 23.3 47 0.0016 29.3 2.9 59 315-374 153-213 (221)
264 2h5e_A Peptide chain release f 23.2 69 0.0024 33.9 4.6 43 305-347 123-165 (529)
265 2e6f_A Dihydroorotate dehydrog 23.1 1.8E+02 0.0063 27.8 7.3 48 305-354 148-197 (314)
266 3o47_A ADP-ribosylation factor 22.8 1.2E+02 0.0042 29.5 6.0 61 315-375 265-327 (329)
267 1h4p_A Glucan 1,3-beta-glucosi 22.7 1.2E+02 0.004 30.8 6.0 54 306-360 76-141 (408)
268 3r12_A Deoxyribose-phosphate a 22.6 3.6E+02 0.012 26.5 9.3 123 327-472 54-195 (260)
269 3ewb_X 2-isopropylmalate synth 22.6 2.1E+02 0.0072 27.9 7.7 104 298-407 116-227 (293)
270 2qgq_A Protein TM_1862; alpha- 22.5 1.4E+02 0.0047 28.8 6.3 59 292-350 126-189 (304)
271 3oa3_A Aldolase; structural ge 22.4 2.7E+02 0.0093 27.8 8.4 88 259-371 140-229 (288)
272 3sr3_A Microcin immunity prote 22.4 70 0.0024 32.0 4.2 94 305-403 33-136 (336)
273 2h9a_A Carbon monoxide dehydro 22.4 2E+02 0.0068 30.3 7.8 99 314-426 125-227 (445)
274 1mky_A Probable GTP-binding pr 22.3 1.5E+02 0.005 30.0 6.7 58 313-375 107-166 (439)
275 1nvm_A HOA, 4-hydroxy-2-oxoval 22.3 1.4E+02 0.0047 29.7 6.4 100 303-407 120-224 (345)
276 3irs_A Uncharacterized protein 22.2 3E+02 0.01 26.0 8.5 21 410-433 138-158 (291)
277 1olt_A Oxygen-independent copr 22.1 1.2E+02 0.004 31.2 5.9 80 268-351 156-239 (457)
278 3ijp_A DHPR, dihydrodipicolina 21.8 1.1E+02 0.0038 30.2 5.5 59 307-371 103-161 (288)
279 1n7k_A Deoxyribose-phosphate a 21.6 1.7E+02 0.0059 28.1 6.6 54 305-360 122-177 (234)
280 1zun_B Sulfate adenylate trans 21.5 1.9E+02 0.0066 29.2 7.4 42 304-345 144-192 (434)
281 3gi1_A LBP, laminin-binding pr 21.4 5E+02 0.017 24.9 10.0 68 288-356 149-238 (286)
282 3nra_A Aspartate aminotransfer 21.3 1.8E+02 0.0061 27.7 6.7 44 316-360 179-226 (407)
283 3p6l_A Sugar phosphate isomera 21.2 1.6E+02 0.0056 26.7 6.2 42 309-352 69-110 (262)
284 2f6k_A Metal-dependent hydrola 21.0 2.6E+02 0.0087 25.9 7.6 20 410-432 135-154 (307)
285 3cb4_D GTP-binding protein LEP 20.9 87 0.003 33.9 4.8 65 308-374 115-181 (599)
286 4f3y_A DHPR, dihydrodipicolina 20.8 1.2E+02 0.004 29.6 5.3 58 307-370 88-145 (272)
287 2e6f_A Dihydroorotate dehydrog 20.7 3.6E+02 0.012 25.7 8.8 35 309-346 85-120 (314)
288 2lnd_A De novo designed protei 20.6 1.4E+02 0.0049 25.2 5.0 63 304-375 39-101 (112)
289 3bbn_M Ribosomal protein S13; 20.4 25 0.00085 32.1 0.4 25 64-88 79-103 (145)
290 2qjg_A Putative aldolase MJ040 20.4 2.3E+02 0.0078 26.5 7.1 115 309-425 105-232 (273)
291 1t9h_A YLOQ, probable GTPase E 20.3 1E+02 0.0036 30.4 4.9 43 305-347 106-152 (307)
292 1ivn_A Thioesterase I; hydrola 20.3 3.9E+02 0.013 22.6 8.6 70 303-375 86-176 (190)
293 3i45_A Twin-arginine transloca 20.2 3.7E+02 0.013 25.5 8.7 117 310-430 91-231 (387)
294 3ble_A Citramalate synthase fr 20.1 1.1E+02 0.0039 30.3 5.2 56 299-354 133-191 (337)
295 4do7_A Amidohydrolase 2; enzym 20.1 2.9E+02 0.01 26.1 8.0 48 303-358 122-170 (303)
296 3ez2_A Plasmid partition prote 20.0 1.9E+02 0.0065 28.6 6.8 89 227-346 243-336 (398)
No 1
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=100.00 E-value=1.7e-219 Score=1698.44 Aligned_cols=435 Identities=44% Similarity=0.755 Sum_probs=430.7
Q ss_pred CccccccccchhhHHHHHHhHHHHHHHhhhhcccCcChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHH
Q 010734 1 MDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPE 80 (502)
Q Consensus 1 me~iNLHfTGD~hAIt~A~NLlaA~idn~i~~~n~~~~~~~~~~l~p~~~~g~r~~~~~~~~r~~~l~~~~~~p~~~~~~ 80 (502)
||||||||||||||||||||||||+|||||||||
T Consensus 108 MediNLHfTGD~HAItaAnNLLaA~iDn~i~~gn---------------------------------------------- 141 (543)
T 3do6_A 108 SDEINLHFTGDMHAVASAHNLLAAVLDSHIKHGN---------------------------------------------- 141 (543)
T ss_dssp HHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHTTC----------------------------------------------
T ss_pred hhhccccccchHHHHHHHHHHHHHHHHHHHhccC----------------------------------------------
Confidence 8999999999999999999999999999999999
Q ss_pred HhhhhccCCCCCCceeeeecccccccccceeEeccCCCCCCcceecceeEeehhhHHHHHHccCCHHHHHHHhcCcEEee
Q 010734 81 EINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGN 160 (502)
Q Consensus 81 ~~~~~~~l~iDp~~I~w~Rv~D~NDR~LR~I~iglg~~~~G~~re~gFdIT~ASEiMAIl~La~~l~Dlk~Rl~~ivv~~ 160 (502)
+|+|||++|+||||||||||+||+|++|||++.||+|||+|||||||||||||||||+|++|||+|||||||||
T Consensus 142 ------~L~IDp~~I~WkRv~D~NDR~LR~IvvGlGg~~~G~~re~gFdITvASEiMAILcLa~dl~DLk~Rlg~ivvay 215 (543)
T 3do6_A 142 ------ELKIDITRVFWKRTMDMNDRALRSIVIGLGGSANGFPREDSFIITAASEVMAILALSENMKDLKERLGKIIVAL 215 (543)
T ss_dssp ------TTCEEEEEECCCEEESSCCGGGSSEEESCSSGGGCCCEEECEEEGGGSHHHHHHHHCSSHHHHHHHHHTCEEEE
T ss_pred ------ccCCCCCeEEEEecccccCceeeeeEECCCCCCCCCccccceeEEehhhhhhHHHhcCCHHHHHHHhcCEEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeecccccchhHHHHhhhccCcCcceeecCceeEEcccccchhcccCchHHHHHHHHHhcCCCCeEEeeccccc
Q 010734 161 SKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGA 240 (502)
Q Consensus 161 ~~~g~pvta~DL~~~GAm~~lLkdAi~PNLvQTlEgtPa~vHgGPFANIAhG~nSviAtk~alkla~~~dyvVTEAGFga 240 (502)
|+||+||||+||+++||||+||||||||||||||||||||||||||||||||||||||||+||||+ |||||||||||
T Consensus 216 ~~~g~PVta~DL~~~GAmt~LLkDAikPNLvQTlEgtPa~VHgGPFANIAHGcnSviAtk~ALkla---DyvVTEAGFGA 292 (543)
T 3do6_A 216 DADRKIVRISDLGIQGAMAVLLKDAINPNLVQTTEGTPALIHCGPFANIAHGTNSIIATKMAMKLS---EYTVTEAGFGA 292 (543)
T ss_dssp ETTSCEEEHHHHTCHHHHHHHTTTTTSCEEEEETTSCEEEECCCCCSSSSCCBCCHHHHHHHHHHC---SEEEEEBSSST
T ss_pred cCCCCeEehHhcccchhHHHHHHhhcCccceeeccCCeeEEecCccccccccchHHHHHHHHHhcc---CeEEEeccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred cccchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcEE
Q 010734 241 DIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVV 320 (502)
Q Consensus 241 DlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvV 320 (502)
|||||||||||||.+||+||||||||||||||||||+++ ++|.+||+++|++||+||+|||||+++||+|||
T Consensus 293 DlGaEKF~dIKCR~~gl~P~avVlVATvRALK~hGG~~~--------~~l~~enl~al~~G~~NL~kHIen~~~fGvpvV 364 (543)
T 3do6_A 293 DLGAEKFIDFVSRVGGFYPNAAVLVATVRALKYHGGANL--------KNIHEENLEALKEGFKNLRVHVENLRKFNLPVV 364 (543)
T ss_dssp TTHHHHHHHTHHHHHTCCCSEEEEEECHHHHHHHTTCCG--------GGTTSCCHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred ccchHhhcCccccccCCCCCEEEEEeehHHHHhcCCCCh--------hhcCccCHHHHHHHHHHHHHHHHHHHHcCCCeE
Confidence 999999999999999999999999999999999999986 678899999999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCCCCHHHHHHHHHH-
Q 010734 321 VAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR- 399 (502)
Q Consensus 321 VAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~- 399 (502)
||||+|++||++|+++|+++|+++|+ ++++|+||++||+|++|||++|+++|+ +++|+|||++++||+|||++||+
T Consensus 365 VaiN~F~tDT~aEi~~v~~~~~~~G~-~~~~s~~wa~GG~G~~~LA~~Vv~~~e--~~~f~~lY~~~~~i~eKI~~Ia~~ 441 (543)
T 3do6_A 365 VALNRFSTDTEKEIAYVVKECEKLGV-RVAVSEVFKKGSEGGVELAKAVAEAAK--DVEPAYLYEMNDPVEKKIEILAKE 441 (543)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHTTTC-EEEEECHHHHGGGGSHHHHHHHHHHCC--CCCCCCSSCTTSCHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCC-CEEEechhhccchhHHHHHHHHHHHhc--CCCcccccCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999 599999999999999999999999998 57899999999999999999999
Q ss_pred HhCCCceeeCHHHHHHHHHHHHCCCCCCCeeEeecCCCCCCCCCCCCCCCCceEEeeEEEeeCCCceEEeecCccccCCC
Q 010734 400 SYGASGVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPG 479 (502)
Q Consensus 400 IYGA~~V~fS~~A~kqLk~ie~~Gf~~LPVCmAKTqySlSdDp~l~g~P~gf~i~Vrdv~~~aGAGFiv~~~G~I~tMPG 479 (502)
||||++|+||++|++||++||++||++||||||||||||||||+++|+|+||+||||||++|+|||||||+||+||||||
T Consensus 442 iYGA~~V~~s~~A~~~l~~~~~~G~~~lPvCmAKTqySlS~dp~~~G~P~gf~~~irdv~~saGAGFiv~l~G~i~tMPG 521 (543)
T 3do6_A 442 IYRAGRVEFSDTAKNALKFIKKHGFDELPVIVAKTPKSISHDPSLRGAPEGYTFVVSDLFVSAGAGFVVALSGDINLMPG 521 (543)
T ss_dssp TSCCSEEEECHHHHHHHHHHHHTTCTTSCEEEECCSSSSSSCTTCCSCCCSCEEEECEEEEETTTTEEEEECSCCCSSCC
T ss_pred HcCCCeEEECHHHHHHHHHHHhcCCCCCCEEEEccCcCcccCccccCCCCCceEEeeEEEEcCCCcEEEEEeCcceeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeeeeeCCCCeEeecC
Q 010734 480 LPTRPCFYEIDVDTATGKVVGLS 502 (502)
Q Consensus 480 Lpk~Paa~~Idid~~~G~I~GL~ 502 (502)
|||+|+|++|||| ++|+|+|||
T Consensus 522 Lp~~Paa~~idvd-~~G~i~GLf 543 (543)
T 3do6_A 522 LPKKPNALNMDVD-DSGNIVGVS 543 (543)
T ss_dssp CCSSCGGGGCEEC-TTSCEESCC
T ss_pred CCCCccceeCcCC-CCCCEeeCC
Confidence 9999999999999 999999998
No 2
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=100.00 E-value=1.6e-216 Score=1684.30 Aligned_cols=435 Identities=52% Similarity=0.875 Sum_probs=428.4
Q ss_pred CccccccccchhhHHHHHHhHHHHHHHhhhhcccCcChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHH
Q 010734 1 MDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPE 80 (502)
Q Consensus 1 me~iNLHfTGD~hAIt~A~NLlaA~idn~i~~~n~~~~~~~~~~l~p~~~~g~r~~~~~~~~r~~~l~~~~~~p~~~~~~ 80 (502)
||||||||||||||||||||||||+|||||||||
T Consensus 122 me~~nLhfTGD~hAItaAnNLlaA~iDn~i~~gn---------------------------------------------- 155 (557)
T 3pzx_A 122 MEDINLHFTGDIHAVTYAHNLLAAMVDNHLQQGN---------------------------------------------- 155 (557)
T ss_dssp HHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHTTC----------------------------------------------
T ss_pred chhcccCccCchhhHHHhhhHHHHHHHHHHhhcC----------------------------------------------
Confidence 8999999999999999999999999999999999
Q ss_pred HhhhhccCCCCCCceeeeecccccccccceeEeccCCCCCCcceecceeEeehhhHHHHHHccCCHHHHHHHhcCcEEee
Q 010734 81 EINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGN 160 (502)
Q Consensus 81 ~~~~~~~l~iDp~~I~w~Rv~D~NDR~LR~I~iglg~~~~G~~re~gFdIT~ASEiMAIl~La~~l~Dlk~Rl~~ivv~~ 160 (502)
+|+|||++|+||||||||||+||+|++|+|++.||+|||+|||||||||||||||||+|++|||+|||||||||
T Consensus 156 ------~l~idp~~i~w~Rv~D~NdR~LR~i~~glg~~~~G~~re~gFdITvASEiMAIlcLa~dl~Dlk~Rlg~ivv~~ 229 (557)
T 3pzx_A 156 ------VLNIDPRTITWRRVIDLNDRALRNIVIGLGGKANGVPRETGFDISVASEVMACLCLASDLMDLKERFSRIVVGY 229 (557)
T ss_dssp ------TTCBCGGGCCCCEEESSCCGGGSSEEESCSSGGGCCCEEECEEEGGGCHHHHHHHHCSSHHHHHHHHHHCEEEE
T ss_pred ------CCCccCCeeEEeeeecCChHHhhhhhhccCCCCCCCccccceeEEehhhhhhHHHhcCCHHHHHHHhhCEEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeecccccchhHHHHhhhccCcCcceeecCceeEEcccccchhcccCchHHHHHHHHHhcCCCCeEEeeccccc
Q 010734 161 SKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGA 240 (502)
Q Consensus 161 ~~~g~pvta~DL~~~GAm~~lLkdAi~PNLvQTlEgtPa~vHgGPFANIAhG~nSviAtk~alkla~~~dyvVTEAGFga 240 (502)
|++|+||||+||+++||||+||||||||||||||||||||||||||||||||||||||||+||||+ |||||||||||
T Consensus 230 ~~~g~PVta~DL~~~GAmt~LLkDAikPNLvQTlEgtPa~vHgGPFANIAHGcnSviAtk~ALkl~---dyvVTEAGFGa 306 (557)
T 3pzx_A 230 TYDGKPVTAGDLEAQGSMALLMKDAIKPNLVQTLENTPAFIHGGPFANIAHGCNSIIATKTALKLA---DYVVTEAGFGA 306 (557)
T ss_dssp BTTSCEEETGGGTCHHHHHHHTTTTTSCEEEEETTCCEEEECCCCCSSSSCCBCCHHHHHHHHHHC---SEEEEEBSSCT
T ss_pred cCCCCeeeHHHcccchhHHHHHHhhcCccceeeccCCeeEEecCcccccccCchHHHHHHHHHhcc---CeEEEecccCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred cccchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcEE
Q 010734 241 DIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVV 320 (502)
Q Consensus 241 DlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvV 320 (502)
|||||||||||||.+||+||||||||||||||||||+++ ++|.+||+++|++||+||+|||||+++||+|||
T Consensus 307 DlGaEKF~dIKcR~~gl~P~avVlVATvRALK~hGG~~~--------~~l~~en~~al~~G~~NL~kHien~~~fGvpvV 378 (557)
T 3pzx_A 307 DLGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVPK--------SDLATENLEALREGFANLEKHIENIGKFGVPAV 378 (557)
T ss_dssp TTHHHHHHHTHHHHHTCCCCEEEEEECHHHHHHHTTCCG--------GGTTSCCHHHHHHHHHHHHHHHHHHHTTTCCEE
T ss_pred CcchhhhcCCcccccCCCCCEEEEEeehHHHHhcCCCCh--------hhcCccCHHHHHHHHHHHHHHHHHHHHcCCCeE
Confidence 999999999999999999999999999999999999985 778899999999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCCCCHHHHHHHHHH-
Q 010734 321 VAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR- 399 (502)
Q Consensus 321 VAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~- 399 (502)
||||+|++||++|+++|+++|+++|+ ++++| |++||+|++|||++|+++|++++++|+|||++++||+|||++||+
T Consensus 379 VaiN~F~tDT~aEi~~v~~~~~~~G~-~~~~~--wa~GG~G~~~LA~~Vv~~~~~~~~~f~~lY~~~~~i~eKI~~Ia~~ 455 (557)
T 3pzx_A 379 VAINAFPTDTEAELNLLYELCAKAGA-EVALS--WAKGGEGGLELARKVLQTLESRPSNFHVLYNLDLSIKDKIAKIATE 455 (557)
T ss_dssp EEEECCTTCCHHHHHHHHHHCCSSEE-EEECH--HHHGGGGGHHHHHHHHHHHHHCCCCCCCSSCTTSCHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCC-CEEEE--ecccchhHHHHHHHHHHHHhcCCCCccccCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999 59999 999999999999999999997678899999999999999999999
Q ss_pred HhCCCceeeCHHHHHHHHHHHHCCCCCCCeeEeecCCCCCCCCCCCCCCCCceEEeeEEEeeCCCceEEeecCccccCCC
Q 010734 400 SYGASGVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPG 479 (502)
Q Consensus 400 IYGA~~V~fS~~A~kqLk~ie~~Gf~~LPVCmAKTqySlSdDp~l~g~P~gf~i~Vrdv~~~aGAGFiv~~~G~I~tMPG 479 (502)
||||++|+||++|++||++||++||++||||||||||||||||+++|+|+||+||||||++|+|||||||+||+||||||
T Consensus 456 iYGA~~V~~s~~A~~~l~~~~~~G~~~lPvCmAKTqyS~S~dp~~~G~P~gf~~~ir~v~~s~GAGFiv~l~G~i~tMPG 535 (557)
T 3pzx_A 456 IYGADGVNYTAEADKAIQRYESLGYGNLPVVMAKTQYSFSDDMTKLGRPRNFTITVREVRLSAGGRLIVPITGAIMTMPG 535 (557)
T ss_dssp TTCCSCEEECHHHHHHHHHHHHTTCTTSCBCCBCCSSCSSSSTTCCSSCCSCCEEECCCEEETTTEEECBCSSCCCCSCC
T ss_pred HhCCCeEEECHHHHHHHHHHHHcCCCCCCEEEEcCCcCcCcCccccCCCCCceEEeeEEEEcCCCcEEEEEeCcceeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeeeeeCCCCeEeecC
Q 010734 480 LPTRPCFYEIDVDTATGKVVGLS 502 (502)
Q Consensus 480 Lpk~Paa~~Idid~~~G~I~GL~ 502 (502)
|||+|+|++|||| ++|+|+|||
T Consensus 536 Lp~~Paa~~idvd-~~G~i~GLf 557 (557)
T 3pzx_A 536 LPKRPAACNIDID-ADGVITGLF 557 (557)
T ss_dssp CCSSCGGGGCBCS-SSCCBCC--
T ss_pred CCCCccceecccC-CCCCEeecC
Confidence 9999999999999 999999998
No 3
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.95 E-value=1.7e-28 Score=198.46 Aligned_cols=70 Identities=56% Similarity=0.883 Sum_probs=67.5
Q ss_pred hhhhcccCcChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHhhhhccCCCCCCceeee
Q 010734 28 TRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWR 98 (502)
Q Consensus 28 n~i~~~n~~~~~~~~~~l~p~~~~g~r~~~~~~~~r~~~l~~~~~~p~~~~~~~~~~~~~l~iDp~~I~w~ 98 (502)
.+||||++|+|++||+|||| .++|+|+||++||+||+||||+|+||++||+||+++|++|||||.+|+|+
T Consensus 2 ~~mfHE~TQsD~aLy~RLVP-~~kG~R~Fs~iql~RL~kLGI~ktdP~~LT~eEi~~FaRLdIDP~TITw~ 71 (71)
T 2eo2_A 2 SSGSSGSTQTDKALYNRLVP-LVNGVREFSEIQLSRLKKLGIHKTDPSTLTEEEVRKFARLNIDPATITWQ 71 (71)
T ss_dssp CCCSCCSSCSHHHHHHHHSC-CSSSSCCCCHHHHHHHHHHTCCCCSTTTCCHHHHHHHHHTCCCSTTCCCC
T ss_pred CccccccccchHHHHHhhCC-CCCCeeecCHHHHHHHHHcCCCCCCcccCCHHHHhhceecccCccceeeC
Confidence 47999999999999999999 56799999999999999999999999999999999999999999999996
No 4
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=86.64 E-value=1.5 Score=43.24 Aligned_cols=143 Identities=17% Similarity=0.223 Sum_probs=89.2
Q ss_pred CCCCCccCCCCCch------hcccccHHHHHHHHh--hHHHHHHHHhh--cCCcEEEE--ecC-CCCCCHHHHHHHHHHH
Q 010734 275 GGGPQVVAGKPLDH------AYLNENVALVEAGCV--NLARHIANTKA--YGANVVVA--VNM-FATDSKAELNAVRNAA 341 (502)
Q Consensus 275 GG~~~~~~~~pl~~------~l~~eNl~AL~~G~~--NL~kHIeNi~~--fGvPvVVA--INr-F~tDT~~Ei~~v~~~c 341 (502)
+|+.-..+|-|..+ .+.+-+..||+.|+. ++...++.+|+ ..+|+|+- .|- |.... +...+.|
T Consensus 46 ~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~----~~f~~~~ 121 (271)
T 3nav_A 46 AGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLVYARGI----DDFYQRC 121 (271)
T ss_dssp TTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEECHHHHHHTCH----HHHHHHH
T ss_pred cCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHhH----HHHHHHH
Confidence 67777777755422 345567789999953 55556666765 37898873 363 33333 4455778
Q ss_pred HHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCCCCHHHHHHHHHH-----Hh-----CCCce--eeC
Q 010734 342 MAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-----SY-----GASGV--EYS 409 (502)
Q Consensus 342 ~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~-----IY-----GA~~V--~fS 409 (502)
++.|+..+.+.+.=- |-++.+.+.+++..-.+-+|-..+.|. +.++.|++ || |-.+. .++
T Consensus 122 ~~aGvdGvIipDlp~-------ee~~~~~~~~~~~gl~~I~lvap~t~~-eri~~i~~~~~gfiY~vs~~GvTG~~~~~~ 193 (271)
T 3nav_A 122 QKAGVDSVLIADVPT-------NESQPFVAAAEKFGIQPIFIAPPTASD-ETLRAVAQLGKGYTYLLSRAGVTGAETKAN 193 (271)
T ss_dssp HHHTCCEEEETTSCG-------GGCHHHHHHHHHTTCEEEEEECTTCCH-HHHHHHHHHCCSCEEECCCC--------CC
T ss_pred HHCCCCEEEECCCCH-------HHHHHHHHHHHHcCCeEEEEECCCCCH-HHHHHHHHHCCCeEEEEeccCCCCcccCCc
Confidence 889998666654422 235667777765322345666666664 57777765 57 32233 367
Q ss_pred HHHHHHHHHHHHCCCCCCCeeE
Q 010734 410 EEAEKQIEMYTGQGFSGLPICM 431 (502)
Q Consensus 410 ~~A~kqLk~ie~~Gf~~LPVCm 431 (502)
+...+-++++.+.. ++|||+
T Consensus 194 ~~~~~~v~~vr~~~--~~Pv~v 213 (271)
T 3nav_A 194 MPVHALLERLQQFD--APPALL 213 (271)
T ss_dssp HHHHHHHHHHHHTT--CCCEEE
T ss_pred hhHHHHHHHHHHhc--CCCEEE
Confidence 77888899998874 799998
No 5
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=85.53 E-value=1.6 Score=37.04 Aligned_cols=69 Identities=13% Similarity=0.073 Sum_probs=46.7
Q ss_pred hhHHHHHHHHhh---cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 303 VNLARHIANTKA---YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 303 ~NL~kHIeNi~~---fGvPvVVAINrF~tDT~~E--i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
.++.+.++.+++ -++|++|++|+..-..+.+ .+.+++++++.|+. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~~~~~ 174 (181)
T 2efe_B 101 ERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLF-FMETS--AKTATNVKEIFYEIARRLP 174 (181)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEECC--SSSCTTHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCE-EEEEE--CCCCCCHHHHHHHHHHHHH
Confidence 344455555554 3899999999976533222 35667888888884 54443 5678999999888887764
No 6
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=85.21 E-value=10 Score=35.27 Aligned_cols=135 Identities=13% Similarity=0.164 Sum_probs=85.0
Q ss_pred cccccHHHHHHHHhhHHHHHHHHhhcCCcEEEE-ec-----CCC--CCCHHH-------HHHHHHHHHHcCCCeEEEcCc
Q 010734 290 YLNENVALVEAGCVNLARHIANTKAYGANVVVA-VN-----MFA--TDSKAE-------LNAVRNAAMAAGAFDAVVCSH 354 (502)
Q Consensus 290 l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVA-IN-----rF~--tDT~~E-------i~~v~~~c~~~Gv~~~~vs~~ 354 (502)
+..+|.+.-++.+..+++.|+..+.+|.+.|+. +. .|+ .+.++. ++.+.+.|++.|+. +++-++
T Consensus 75 l~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lEn~ 153 (294)
T 3vni_A 75 LSSPDPDIRKNAKAFYTDLLKRLYKLDVHLIGGALYSYWPIDYTKTIDKKGDWERSVESVREVAKVAEACGVD-FCLEVL 153 (294)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHTCCEEEESTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCE-EEEECC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhCCCeeeccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEEec
Confidence 335677778889999999999999999999985 22 233 233332 44556677788995 777766
Q ss_pred cc-cCc-cchhHHHHHHHHHhhcCCCCccccCCC------CCCHHHHHHHHHH-Hh------------CCCceeeCHHHH
Q 010734 355 HA-HGG-KGAVDLGIAVQRACENVTQPLKFLYPL------DVSIKEKIDTIAR-SY------------GASGVEYSEEAE 413 (502)
Q Consensus 355 wa-kGG-eGa~eLA~~Vv~a~e~~~~~fk~LY~~------~~sI~eKIe~IA~-IY------------GA~~V~fS~~A~ 413 (502)
.. .+. -...+-+..+++.+.. .++.+.||. ..++.+=|+++.. |. |-..+.| .
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~v~~--~~vg~~~D~~h~~~~g~d~~~~l~~~~~~i~~vHl~D~~r~~pG~G~id~----~ 227 (294)
T 3vni_A 154 NRFENYLINTAQEGVDFVKQVDH--NNVKVMLDTFHMNIEEDSIGGAIRTAGSYLGHLHTGECNRKVPGRGRIPW----V 227 (294)
T ss_dssp CTTTCSSCCSHHHHHHHHHHHCC--TTEEEEEEHHHHHHHCSCHHHHHHHHGGGEEEEEECCTTSCCTTSSSCCH----H
T ss_pred CcccCcccCCHHHHHHHHHHcCC--CCEEEEEEhhhhHHcCCCHHHHHHHhhhhEeEEEeCCCCCCCCCCCCcCH----H
Confidence 32 221 1233444556666642 346666543 3467777777765 43 3333444 4
Q ss_pred HHHHHHHHCCCCCCCeeEe
Q 010734 414 KQIEMYTGQGFSGLPICMA 432 (502)
Q Consensus 414 kqLk~ie~~Gf~~LPVCmA 432 (502)
+-++.+++.||+. |+++=
T Consensus 228 ~~~~~L~~~gy~g-~~~lE 245 (294)
T 3vni_A 228 EIGEALADIGYNG-SVVME 245 (294)
T ss_dssp HHHHHHHHTTCCS-CEEEC
T ss_pred HHHHHHHHhCCCC-cEEEE
Confidence 5677888899987 66664
No 7
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=82.87 E-value=0.84 Score=43.48 Aligned_cols=87 Identities=13% Similarity=0.176 Sum_probs=58.6
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHHHHH-HHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCC--CCccccCC
Q 010734 309 IANTKAYGANVVVAVNMFATDSKAELN-AVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVT--QPLKFLYP 385 (502)
Q Consensus 309 IeNi~~fGvPvVVAINrF~tDT~~Ei~-~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~--~~fk~LY~ 385 (502)
+..+..+++|+|+++|+..-....++. .+.++++..|+. +.. .=++-|+|-.+|-+.+.+.++.+. ..++..|+
T Consensus 103 ~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~-vi~--~SA~~g~gi~el~~~i~~~~~~~~~~~~~~~~y~ 179 (258)
T 3a1s_A 103 LLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIP-VVF--TSSVTGEGLEELKEKIVEYAQKNTILHRMILDYG 179 (258)
T ss_dssp HHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSC-EEE--CCTTTCTTHHHHHHHHHHHHHSSSCSCCCCCCCC
T ss_pred HHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHcCCC-EEE--EEeeCCcCHHHHHHHHHHHhhccccCCCcccCCc
Confidence 344556899999999986321111111 256677888985 543 345778999999999999876422 23444564
Q ss_pred CCCCHHHHHHHHHH-H
Q 010734 386 LDVSIKEKIDTIAR-S 400 (502)
Q Consensus 386 ~~~sI~eKIe~IA~-I 400 (502)
..+++.|..|.. +
T Consensus 180 --~~~~~~i~~~~~~~ 193 (258)
T 3a1s_A 180 --EKVESEIKKVENFL 193 (258)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHHH
Confidence 468999999988 6
No 8
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=82.27 E-value=4.7 Score=39.20 Aligned_cols=65 Identities=12% Similarity=0.033 Sum_probs=45.4
Q ss_pred HHHHhhcCCcEEEEecCCCCC-CHHHH-HHHHHHHHHcC--CCeEEEcCccccCccchhHHHHHHHHHhhcC
Q 010734 309 IANTKAYGANVVVAVNMFATD-SKAEL-NAVRNAAMAAG--AFDAVVCSHHAHGGKGAVDLGIAVQRACENV 376 (502)
Q Consensus 309 IeNi~~fGvPvVVAINrF~tD-T~~Ei-~~v~~~c~~~G--v~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~ 376 (502)
++.+++.++|+|+++|+..-. ..+++ +.+.++++..+ .. +. ..=++-|+|-.+|-+.+.+.+.+.
T Consensus 115 ~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~-i~--~vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 115 QNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTE-IV--PISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp HHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCC-EE--ECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred HHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCe-EE--EEeCCCCCCHHHHHHHHHHhCccC
Confidence 667777999999999997543 33333 34455566665 32 33 334677899999999999988654
No 9
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=82.13 E-value=6.7 Score=37.48 Aligned_cols=141 Identities=11% Similarity=0.037 Sum_probs=81.9
Q ss_pred ccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEe-cC-----CCC--CCHHH-------HHHHHHHHHHcCCCeEEEcC--
Q 010734 291 LNENVALVEAGCVNLARHIANTKAYGANVVVAV-NM-----FAT--DSKAE-------LNAVRNAAMAAGAFDAVVCS-- 353 (502)
Q Consensus 291 ~~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAI-Nr-----F~t--DT~~E-------i~~v~~~c~~~Gv~~~~vs~-- 353 (502)
..+|.+.-++.+..+++.|+-.+.+|.+.||.- .. |.. ++++. +..+.+.|++.|+..+++-.
T Consensus 102 ~~~d~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~~l~lE~~~ 181 (316)
T 3qxb_A 102 LAPTLELQSLGYQHLKRAIDMTAAMEVPATGMPFGSYSAADALNPARREEIYAIARDMWIELAAYAKRQGLSMLYVEPVP 181 (316)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHTTCCEEEECCBBCCHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEECCCS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCCcCccccCCcccHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEecC
Confidence 356777888999999999999999999999742 11 111 22222 44455677788994155544
Q ss_pred ccccCccchhHHHHHHHHHhhc-CCCCccccCC-----------CCCCHHHHHHHHHH-Hh--CCCceee------C---
Q 010734 354 HHAHGGKGAVDLGIAVQRACEN-VTQPLKFLYP-----------LDVSIKEKIDTIAR-SY--GASGVEY------S--- 409 (502)
Q Consensus 354 ~wakGGeGa~eLA~~Vv~a~e~-~~~~fk~LY~-----------~~~sI~eKIe~IA~-IY--GA~~V~f------S--- 409 (502)
++..=+.- .+-+.++++.++. ++.++..++| .+.++.+=|++... |. ..++... .
T Consensus 182 ~~~~~~~t-~~~~~~l~~~v~~~~~~~vg~~lD~~H~~~~~~~~~~~d~~~~l~~~~~~i~~vHlkD~~~~~d~h~~~~G 260 (316)
T 3qxb_A 182 LATEFPSS-AADAARLMADLDGRTEIPVRLLVDWGHALFEPLFGPEADMDHWMDLCQPWIAAYHIQQTDGQLDRHWSFTQ 260 (316)
T ss_dssp CTTBSSCS-HHHHHHHHHHHTTTSSSCEEEEEEHHHHTCHHHHGGGCSHHHHHHHHGGGEEEEEECBCCSSSCCCBCTTS
T ss_pred CccccCCC-HHHHHHHHHHHhccCCCCEEEEEEccchheecccccccCHHHHHHHHHhhheEEeeecCCCCcCccCCCCC
Confidence 33211222 2333455565532 2234665553 24567776777654 31 1111110 1
Q ss_pred ---HHHHHHHHHHHHCCCCCCCeeEe
Q 010734 410 ---EEAEKQIEMYTGQGFSGLPICMA 432 (502)
Q Consensus 410 ---~~A~kqLk~ie~~Gf~~LPVCmA 432 (502)
-.-.+-++.+++.||+.+|||+=
T Consensus 261 ~G~id~~~i~~~L~~~gy~g~~v~lE 286 (316)
T 3qxb_A 261 PGVVTPQRLQDFWDKYALTDQTFFAE 286 (316)
T ss_dssp CSSCCHHHHHHHHHHTTCSSCCEEEC
T ss_pred CceECHHHHHHHHHHcCCCCceEEEE
Confidence 12345667888999999999883
No 10
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=80.37 E-value=2.1 Score=37.16 Aligned_cols=69 Identities=13% Similarity=-0.007 Sum_probs=46.2
Q ss_pred hhHHHHHHHHhh---cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 303 VNLARHIANTKA---YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 303 ~NL~kHIeNi~~---fGvPvVVAINrF~tDT~~E--i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
.++.+.++.+++ -++|++|++|+-.-..+.+ .+.+++++++.|+. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 111 ~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 111 AAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFE-FFEAS--AKENINVKQVFERLVDVIC 184 (189)
T ss_dssp HTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECB--TTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCe-EEEEE--CCCCCCHHHHHHHHHHHHH
Confidence 344445555555 3899999999976533222 34567788888884 44333 5668999998888887764
No 11
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=80.24 E-value=3.6 Score=39.69 Aligned_cols=129 Identities=11% Similarity=0.092 Sum_probs=72.9
Q ss_pred hcccccHHHHHHHH--hhHHHHHHHHhhc--CCcEEE--EecC-CCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccc
Q 010734 289 AYLNENVALVEAGC--VNLARHIANTKAY--GANVVV--AVNM-FATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKG 361 (502)
Q Consensus 289 ~l~~eNl~AL~~G~--~NL~kHIeNi~~f--GvPvVV--AINr-F~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeG 361 (502)
...+-+..||+.|+ .++...++.+++. .+|+++ ..|. |.... +...+.|.+.|+..+.+.+.=
T Consensus 63 ~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~----~~f~~~~~~aG~dgvii~dl~------ 132 (262)
T 2ekc_A 63 TIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPIFRIGL----EKFCRLSREKGIDGFIVPDLP------ 132 (262)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCHHHHHHHCH----HHHHHHHHHTTCCEEECTTCC------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecCcHHHHhhH----HHHHHHHHHcCCCEEEECCCC------
Confidence 34455667888887 5667888888874 899888 2342 22222 334456788999655554321
Q ss_pred hhHHHHHHHHHhhcCCCCccccCCCCCCHHHHHHHHHH-HhCC---------Ccee--eC-HHHHHHHHHHHHCCCCCCC
Q 010734 362 AVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-SYGA---------SGVE--YS-EEAEKQIEMYTGQGFSGLP 428 (502)
Q Consensus 362 a~eLA~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~-IYGA---------~~V~--fS-~~A~kqLk~ie~~Gf~~LP 428 (502)
.+=.+.+++.+.+..-.+-++...+.+. +.|+.|++ .-|- .+.. ++ +...+.++++.+.- ++|
T Consensus 133 -~ee~~~~~~~~~~~gl~~i~l~~p~t~~-~rl~~ia~~a~gfiy~vs~~g~TG~~~~~~~~~~~~~v~~vr~~~--~~p 208 (262)
T 2ekc_A 133 -PEEAEELKAVMKKYVLSFVPLGAPTSTR-KRIKLICEAADEMTYFVSVTGTTGAREKLPYERIKKKVEEYRELC--DKP 208 (262)
T ss_dssp -HHHHHHHHHHHHHTTCEECCEECTTCCH-HHHHHHHHHCSSCEEEESSCC---------CHHHHHHHHHHHHHC--CSC
T ss_pred -HHHHHHHHHHHHHcCCcEEEEeCCCCCH-HHHHHHHHhCCCCEEEEecCCccCCCCCcCcccHHHHHHHHHhhc--CCC
Confidence 2335556666654211233444555443 56777776 3221 1111 33 55667788888753 789
Q ss_pred eeE
Q 010734 429 ICM 431 (502)
Q Consensus 429 VCm 431 (502)
||+
T Consensus 209 v~v 211 (262)
T 2ekc_A 209 VVV 211 (262)
T ss_dssp EEE
T ss_pred EEE
Confidence 987
No 12
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=80.16 E-value=4.8 Score=33.03 Aligned_cols=57 Identities=16% Similarity=0.078 Sum_probs=39.1
Q ss_pred cCCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 315 YGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 315 fGvPvVVAINrF~tDT-~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
.++|+++++|+-.-.. +...+.+.+++++.|+. +..+ =++-|+|-.+|-+.+++.+.
T Consensus 107 ~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 107 DDVPMVLVGNKSDLAARTVESRQAQDLARSYGIP-YIET--SAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp SCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCC-EEEE--CTTTCTTHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCe-EEEe--cCCCCCCHHHHHHHHHHHHH
Confidence 4899999999965322 12234566777888885 4333 35668898888888887664
No 13
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=80.14 E-value=3.5 Score=35.75 Aligned_cols=70 Identities=13% Similarity=0.008 Sum_probs=40.5
Q ss_pred HhhHHHHHHHHhh------cCCcEEEEecCCCCCC-HHH--HHHHHHHHHHcCCCeEEEcCccccC-ccchhHHHHHHHH
Q 010734 302 CVNLARHIANTKA------YGANVVVAVNMFATDS-KAE--LNAVRNAAMAAGAFDAVVCSHHAHG-GKGAVDLGIAVQR 371 (502)
Q Consensus 302 ~~NL~kHIeNi~~------fGvPvVVAINrF~tDT-~~E--i~~v~~~c~~~Gv~~~~vs~~wakG-GeGa~eLA~~Vv~ 371 (502)
+.++.+.++.++. .++|+||++|+..-.. +.+ .+.+.+++++.|+. +..+.. += |+|-.+|-+.+++
T Consensus 112 ~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa--~~~~~gi~~l~~~i~~ 188 (208)
T 2yc2_C 112 FESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLD-FFDVSA--NPPGKDADAPFLSIAT 188 (208)
T ss_dssp HHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCE-EEECCC---------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCE-EEEecc--CCCCcCHHHHHHHHHH
Confidence 3455555555554 5899999999975533 222 35677888888974 554444 44 7888888888777
Q ss_pred Hhh
Q 010734 372 ACE 374 (502)
Q Consensus 372 a~e 374 (502)
.+.
T Consensus 189 ~~~ 191 (208)
T 2yc2_C 189 TFY 191 (208)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 14
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=80.06 E-value=0.97 Score=38.93 Aligned_cols=69 Identities=20% Similarity=0.139 Sum_probs=46.0
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCHHHH-HHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcC
Q 010734 305 LARHIANTKAYGANVVVAVNMFATDSKAEL-NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENV 376 (502)
Q Consensus 305 L~kHIeNi~~fGvPvVVAINrF~tDT~~Ei-~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~ 376 (502)
+...++.++..+.|++++.|+-.-....++ +.+.+++++.|.. +..+. ++-|+|-.+|-+.+++.+.+.
T Consensus 101 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 101 NLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVK-VVPLS--AAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp HHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSC-EEECB--GGGTBSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHhCCC-eEEEE--ecCCCCHHHHHHHHHHHHHhc
Confidence 344566667789999999998422111111 1345667777885 44444 567899999999999988653
No 15
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=79.20 E-value=9 Score=37.15 Aligned_cols=64 Identities=20% Similarity=0.186 Sum_probs=44.9
Q ss_pred HHHhhcCCcEEEEecCCCCCC-HHHH-HHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 310 ANTKAYGANVVVAVNMFATDS-KAEL-NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 310 eNi~~fGvPvVVAINrF~tDT-~~Ei-~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
+.++..+.|+++++|+-...+ .+++ +.+.++++..|...+ -..-++=|+|-.+|.+.+.+.+..
T Consensus 110 ~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~--i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 110 NKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDI--VPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp HHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEE--EECCTTTTTTHHHHHHHHHTTCCB
T ss_pred HHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCce--EEEECCCCCCHHHHHHHHHHhCCc
Confidence 344568999999999987666 4555 555666666675322 244567789999999998877654
No 16
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=78.74 E-value=4.9 Score=33.70 Aligned_cols=69 Identities=12% Similarity=-0.003 Sum_probs=43.8
Q ss_pred hhHHHHHHHHhhc----CCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 303 VNLARHIANTKAY----GANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 303 ~NL~kHIeNi~~f----GvPvVVAINrF~tDT~~E--i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
.++...++.++++ ++|+|+++|+..-..+.+ .+..++++.+.|.. +.. .=++-|+|-.+|-+.+++.+.
T Consensus 94 ~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~--~Sa~~g~gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 94 ESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCK-FIE--TSATLQHNVAELFEGVVRQLR 168 (175)
T ss_dssp HHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSE-EEE--CBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCe-EEE--EecCCCCCHHHHHHHHHHHHH
Confidence 3444444444443 899999999975433222 34456777778874 433 335678999998888887764
No 17
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=78.67 E-value=5.2 Score=34.43 Aligned_cols=69 Identities=12% Similarity=0.099 Sum_probs=45.6
Q ss_pred hHHHHHHHHhh---cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 304 NLARHIANTKA---YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 304 NL~kHIeNi~~---fGvPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
++.+.++.++. -++|+|+++|+..-..+. +.+...+++++.|+. +..+. ++-|+|-.+|-+.+++.+.+
T Consensus 106 ~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 106 NVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP-FLETS--AKNATNVEQSFMTMAAEIKK 179 (196)
T ss_dssp THHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC-EEEEC--TTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCc-EEEEe--CCCCCCHHHHHHHHHHHHHH
Confidence 33344444443 489999999997543322 234567888889986 44333 56788999888888777754
No 18
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=78.50 E-value=4.7 Score=34.41 Aligned_cols=73 Identities=19% Similarity=0.175 Sum_probs=51.3
Q ss_pred HHHHhhHHHHHHHHhh--cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCC-CeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 299 EAGCVNLARHIANTKA--YGANVVVAVNMFATDSKAELNAVRNAAMAAGA-FDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 299 ~~G~~NL~kHIeNi~~--fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv-~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
..-+.++.+.++.++. .++|+|++.|+..-..+...+.+++++++.|. . +..+. ++=|+|-.+|-+.+++.+.
T Consensus 116 ~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 116 AESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFP-VLEAV--ATEGKGVFETLKEVSRLVL 191 (198)
T ss_dssp HHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSC-EEECB--GGGTBTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCce-EEEEe--cCCCcCHHHHHHHHHHHHH
Confidence 3445677777777754 68999999999764433444556788888888 4 44333 4668888888888777664
No 19
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=77.91 E-value=4.3 Score=34.66 Aligned_cols=69 Identities=14% Similarity=0.088 Sum_probs=41.6
Q ss_pred hhHHHHHHHHhh---cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 303 VNLARHIANTKA---YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 303 ~NL~kHIeNi~~---fGvPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
.++.+.++.++. .++|+||++|+..-..+. ..+.+.++|++.|+. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 97 ~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 97 DNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIK-FMETS--AKANINVENAFFTLARDIK 170 (183)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCE-EEECC--C---CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCe-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 344455555554 489999999997543211 134556788888884 54443 4557888888887777664
No 20
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=77.88 E-value=8.2 Score=32.85 Aligned_cols=59 Identities=10% Similarity=-0.063 Sum_probs=41.5
Q ss_pred hhcCCcEEEEecCCCCCC--HHHHHHHHHHHHHcCCCeEEEcCcccc-CccchhHHHHHHHHHhh
Q 010734 313 KAYGANVVVAVNMFATDS--KAELNAVRNAAMAAGAFDAVVCSHHAH-GGKGAVDLGIAVQRACE 374 (502)
Q Consensus 313 ~~fGvPvVVAINrF~tDT--~~Ei~~v~~~c~~~Gv~~~~vs~~wak-GGeGa~eLA~~Vv~a~e 374 (502)
...++|+|+++|+..-.. +...+.+.++|++.|+. +..+. ++ -|+|-.+|-+.+++.+.
T Consensus 120 ~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 120 DRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIP-YIETS--AKDPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp TSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCC-EEEEB--CSSSCBSHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCe-EEEec--cCCCCCCHHHHHHHHHHHHh
Confidence 457999999999976322 22334567788888885 43333 55 78999999888887764
No 21
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*
Probab=77.81 E-value=13 Score=35.19 Aligned_cols=132 Identities=14% Similarity=0.174 Sum_probs=79.3
Q ss_pred cccHHHHHHHHhhHHHHHHHHhhcCCcEEEEe-----cCCCC---CCHHH-------HHHHHHHHHHcCCCeEEEcCccc
Q 010734 292 NENVALVEAGCVNLARHIANTKAYGANVVVAV-----NMFAT---DSKAE-------LNAVRNAAMAAGAFDAVVCSHHA 356 (502)
Q Consensus 292 ~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAI-----NrF~t---DT~~E-------i~~v~~~c~~~Gv~~~~vs~~wa 356 (502)
.++.+.-++.+..+++.|+..+.+|.+.||.- .+|+. ++++. +..+.+.+++.|+. +++-+++.
T Consensus 96 ~~d~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lEn~~~ 174 (309)
T 2hk0_A 96 SEDAAVRAAGKAFFERTLSNVAKLDIHTIGGALHSYWPIDYSQPVDKAGDYARGVEGINGIADFANDLGIN-LCIEVLNR 174 (309)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHTTCCEEEECTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCE-EEEECCCT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeeccccccccCCCcCChHHHHHHHHHHHHHHHHHHHHcCCE-EEEeeccc
Confidence 45556677888999999999999999999953 33422 33332 34455667778995 87877743
Q ss_pred cCc--cchhHHHHHHHHHhhcCCCCccccCCC------CCCHHHHHHHHHH-Hh------------CCCceeeCHHHHHH
Q 010734 357 HGG--KGAVDLGIAVQRACENVTQPLKFLYPL------DVSIKEKIDTIAR-SY------------GASGVEYSEEAEKQ 415 (502)
Q Consensus 357 kGG--eGa~eLA~~Vv~a~e~~~~~fk~LY~~------~~sI~eKIe~IA~-IY------------GA~~V~fS~~A~kq 415 (502)
..+ -...+-+..+++.+.. .++.+++|. ..++.+=|+.... |. |...+. -.+-
T Consensus 175 ~~~~~~~~~~~~~~l~~~v~~--~~vg~~~D~~H~~~~g~d~~~~l~~~~~~i~~vHl~D~~r~~~G~G~id----~~~~ 248 (309)
T 2hk0_A 175 FENHVLNTAAEGVAFVKDVGK--NNVKVMLDTFHMNIEEDSFGDAIRTAGPLLGHFHTGESNRRVPGKGRMP----WHEI 248 (309)
T ss_dssp TTCSSCCSHHHHHHHHHHHTC--TTEEEEEEHHHHHHHCSCHHHHHHHHGGGEEEEEECCTTSCCTTSSCCC----HHHH
T ss_pred ccccccCCHHHHHHHHHHcCC--CCeEEEEehhhHhhcCcCHHHHHHHHHhhEEEEEeCCCCCCCCcCCccC----HHHH
Confidence 211 1234445556666642 346666643 3456666666654 43 222332 2345
Q ss_pred HHHHHHCCCCCCCeeE
Q 010734 416 IEMYTGQGFSGLPICM 431 (502)
Q Consensus 416 Lk~ie~~Gf~~LPVCm 431 (502)
++.+.+.||+. |+++
T Consensus 249 ~~~L~~~gy~g-~i~l 263 (309)
T 2hk0_A 249 GLALRDINYTG-AVIM 263 (309)
T ss_dssp HHHHHHTTCCS-EEEE
T ss_pred HHHHHHcCCCC-cEEE
Confidence 56777778865 5554
No 22
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=77.78 E-value=6.2 Score=36.97 Aligned_cols=57 Identities=9% Similarity=-0.009 Sum_probs=42.9
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHHHc-CCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 315 YGANVVVAVNMFATDSKAELNAVRNAAMAA-GAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~-Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
-++|+||+.|+-.-..+.+++.+.+++++. ++. +.. .=++=|+|-.+|-+.+++.++
T Consensus 197 ~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~e--~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 197 TKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQ-VVE--TSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp TTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCC-EEE--CBTTTTBSHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEcccccccHHHHHHHHHHHhcCCCe-EEE--EECCCCCCHHHHHHHHHHHhc
Confidence 479999999998766777788888898874 764 433 335678888888888776653
No 23
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=77.40 E-value=5 Score=33.36 Aligned_cols=69 Identities=10% Similarity=0.098 Sum_probs=44.5
Q ss_pred hHHHHHHHHhh---cCCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 304 NLARHIANTKA---YGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 304 NL~kHIeNi~~---fGvPvVVAINrF~tDT-~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
++.+.++.+++ .++|+++++|+-.-.. ....+.+.+++++.|+. +..+. ++-|+|-.+|-+.+.+.+.+
T Consensus 93 ~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 93 NIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIP-FIESS--AKNDDNVNEIFFTLAKLIQE 165 (170)
T ss_dssp THHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCC-EEECB--TTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCe-EEEEE--CCCCCCHHHHHHHHHHHHHH
Confidence 33334444433 4899999999965321 12234556777888885 44443 56688999988888887754
No 24
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=75.71 E-value=5.1 Score=32.98 Aligned_cols=58 Identities=19% Similarity=0.055 Sum_probs=39.5
Q ss_pred hcCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 314 AYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 314 ~fGvPvVVAINrF~tDT~~E--i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
..++|+++++|+..-..+.+ .+..++++++.|+. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 106 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 106 YEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCP-FMETS--AKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSC-EEEEC--TTCHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCC-EEEec--CCCCcCHHHHHHHHHHHHh
Confidence 36899999999965322211 33456778888885 44333 5668998888888877664
No 25
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=75.62 E-value=2.5 Score=40.18 Aligned_cols=80 Identities=19% Similarity=0.185 Sum_probs=50.2
Q ss_pred HHHhhcCCcEEEEecCCCCCCHHHH-HHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCCC
Q 010734 310 ANTKAYGANVVVAVNMFATDSKAEL-NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDV 388 (502)
Q Consensus 310 eNi~~fGvPvVVAINrF~tDT~~Ei-~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~~ 388 (502)
..+..+++|+|+++|+..--...++ ..+.++++..|++ +..+. ++-|+|-.+|-+.+.+. +. +.. .|+.
T Consensus 104 ~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~-vi~~S--A~~g~gi~el~~~i~~~-~~-~~~---~y~~-- 173 (256)
T 3iby_A 104 SQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCS-VIPIQ--AHKNIGIPALQQSLLHC-SQ-KIK---PLKL-- 173 (256)
T ss_dssp HHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSC-EEECB--GGGTBSHHHHHHHHHTC-CS-CCC---CCCC--
T ss_pred HHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCC-EEEEE--CCCCCCHHHHHHHHHhh-hc-Ccc---cCCH--
Confidence 4456789999999998632111111 1234566678885 44333 66789999999999887 43 221 5544
Q ss_pred CHHHHHHHHHH
Q 010734 389 SIKEKIDTIAR 399 (502)
Q Consensus 389 sI~eKIe~IA~ 399 (502)
.+++.|..|..
T Consensus 174 ~~e~~i~~i~~ 184 (256)
T 3iby_A 174 SLSVAAQQILN 184 (256)
T ss_dssp CCCHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 46666666655
No 26
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=75.30 E-value=1.1 Score=44.08 Aligned_cols=130 Identities=14% Similarity=0.184 Sum_probs=71.7
Q ss_pred hcccccHHHHHHHH--hhHHHHHHHHhhc-CCcEEEE--ec-CCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccch
Q 010734 289 AYLNENVALVEAGC--VNLARHIANTKAY-GANVVVA--VN-MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGA 362 (502)
Q Consensus 289 ~l~~eNl~AL~~G~--~NL~kHIeNi~~f-GvPvVVA--IN-rF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa 362 (502)
....-+..||+.|+ .++.+.|+.+|+. .+|+|+- .| -|...++.++ +.|.+.|+..+.+.+.=-
T Consensus 61 ~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~~~~Pii~m~y~n~v~~~g~~~f~----~~~~~aG~dGviv~Dl~~------ 130 (271)
T 1ujp_A 61 VIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLAWGPERFF----GLFKQAGATGVILPDLPP------ 130 (271)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHHHHHHHCHHHHH----HHHHHHTCCEEECTTCCG------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecCcHHHHhhHHHHH----HHHHHcCCCEEEecCCCH------
Confidence 35556677888886 4556778888875 8898883 34 3333444443 457778996455544321
Q ss_pred hHHHHHHHHHhhcCCCCccccCCCCCCHHHHHHHHHH-HhCCCce-----------eeCHHHHHHHHHHHHCCCCCCCee
Q 010734 363 VDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGV-----------EYSEEAEKQIEMYTGQGFSGLPIC 430 (502)
Q Consensus 363 ~eLA~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~-IYGA~~V-----------~fS~~A~kqLk~ie~~Gf~~LPVC 430 (502)
.+ .+..++.+.+..-..-+|..+..+.+ .|+.|++ --|-.-+ .+++...+.++++.+. .++|||
T Consensus 131 ee-~~~~~~~~~~~gl~~i~liap~s~~e-ri~~ia~~~~gfiy~vs~~G~TG~~~~~~~~~~~~v~~vr~~--~~~Pv~ 206 (271)
T 1ujp_A 131 DE-DPGLVRLAQEIGLETVFLLAPTSTDA-RIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKAR--TALPVA 206 (271)
T ss_dssp GG-CHHHHHHHHHHTCEEECEECTTCCHH-HHHHHHTTCCSCEEEECC------------CCHHHHHHHHTT--CCSCEE
T ss_pred HH-HHHHHHHHHHcCCceEEEeCCCCCHH-HHHHHHHhCCCCEEEEecCcccCCCCCCCccHHHHHHHHHhh--cCCCEE
Confidence 22 23334444432123456666666654 6777765 3222111 1222234566777765 378998
Q ss_pred Ee
Q 010734 431 MA 432 (502)
Q Consensus 431 mA 432 (502)
+.
T Consensus 207 vG 208 (271)
T 1ujp_A 207 VG 208 (271)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 27
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=75.28 E-value=7.5 Score=32.35 Aligned_cols=69 Identities=10% Similarity=-0.024 Sum_probs=44.8
Q ss_pred hhHHHHHHHHhh----cCCcEEEEecCCCCC--CHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 303 VNLARHIANTKA----YGANVVVAVNMFATD--SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 303 ~NL~kHIeNi~~----fGvPvVVAINrF~tD--T~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
.++...++.+.+ .++|+|++.|+-.-. .+-..+...+++.+.|+. +..+ =++=|+|-.+|-+.+++.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~gi~~l~~~l~~~~~ 163 (166)
T 3q72_A 89 EKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCK-FIET--SAALHHNVQALFEGVVRQIR 163 (166)
T ss_dssp HHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCE-EEEC--BGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCc-EEEe--ccCCCCCHHHHHHHHHHHHH
Confidence 444444454444 489999999996532 222334456778888874 4433 35668999999888888765
No 28
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=75.26 E-value=5.9 Score=33.21 Aligned_cols=66 Identities=12% Similarity=0.115 Sum_probs=44.2
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 305 LARHIANTKAYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 305 L~kHIeNi~~fGvPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
+...+......++|+++++|+..-..+. ..+.+++++++.|+. +..+. ++=|+|-.+|-+.+++.+
T Consensus 109 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 109 WLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLL-FLEAS--AKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECC--TTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHH
Confidence 3344455555789999999997543222 235677888888884 44443 456888888888777665
No 29
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=75.12 E-value=7 Score=33.61 Aligned_cols=58 Identities=14% Similarity=0.083 Sum_probs=40.4
Q ss_pred cCCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 315 YGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 315 fGvPvVVAINrF~tDT-~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
.++|++|++|+..-.. +...+.+++++++.|+. +..+ =++-|+|-.+|-+.+++.+.+
T Consensus 125 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~gi~~l~~~l~~~~~~ 183 (190)
T 3con_A 125 DDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIP-FIET--SAKTRQGVEDAFYTLVREIRQ 183 (190)
T ss_dssp SCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCC-EEEC--CTTTCTTHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCe-EEEE--eCCCCCCHHHHHHHHHHHHHH
Confidence 5899999999976422 11234456777888885 4433 456678998988888887754
No 30
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=75.05 E-value=3.1 Score=36.37 Aligned_cols=57 Identities=11% Similarity=-0.094 Sum_probs=39.5
Q ss_pred cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccc-cCccchhHHHHHHHHHhh
Q 010734 315 YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHA-HGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wa-kGGeGa~eLA~~Vv~a~e 374 (502)
-++|+|++.|+-.-..+. ..+.+.+++++.|+. +..+. + +-|+|-.+|-+.+++.+.
T Consensus 126 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~S--a~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 126 RSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCL-FFEVS--ACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp CCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEECC--SSSCSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCc-EEEEe--ecCccccHHHHHHHHHHHHh
Confidence 489999999996532211 124567788888884 54443 4 578998888888887764
No 31
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=74.92 E-value=5.1 Score=34.01 Aligned_cols=68 Identities=15% Similarity=0.067 Sum_probs=44.1
Q ss_pred hHHHHHHHHhh----cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 304 NLARHIANTKA----YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 304 NL~kHIeNi~~----fGvPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
++...++.++. .++|+||++|+..-..+. ..+.+++++++.|+. +..+. ++=|+|-.+|-+.+.+.+.
T Consensus 111 ~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 111 NVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIP-YFETS--AANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp THHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC-EEECC--TTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCC-EEEEE--CCCCCCHHHHHHHHHHHHH
Confidence 34444444443 589999999997543321 234567788888885 44333 4567888888877777664
No 32
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=74.88 E-value=4.3 Score=35.14 Aligned_cols=60 Identities=7% Similarity=-0.058 Sum_probs=36.4
Q ss_pred hcCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 314 AYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 314 ~fGvPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
..++|+||++|+..-..+. ..+.+.+++++.|+.-+.+|-.-..|.+|-.++-+.+++.+
T Consensus 125 ~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 125 ANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC---
T ss_pred CCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHH
Confidence 4689999999997543221 23456778888898633333333345577777766655443
No 33
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=74.76 E-value=8.7 Score=32.60 Aligned_cols=69 Identities=10% Similarity=0.086 Sum_probs=46.2
Q ss_pred hhHHHHHHHHhh-cCCcEEEEecCCCCC-CHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 303 VNLARHIANTKA-YGANVVVAVNMFATD-SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 303 ~NL~kHIeNi~~-fGvPvVVAINrF~tD-T~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
.++...++.++. .+.|+|+++|+-..+ .+...+.+++++++.++. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 133 ~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 133 DRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLL-FIQTS--AKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCHHHHHHHHHHTTCE-EEEEC--TTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCcEEEEEECCCcccccCCHHHHHHHHHHcCCc-EEEEe--cCCCCCHHHHHHHHHHHHH
Confidence 344555555554 569999999997621 122346678888888884 44333 5667898888888877664
No 34
>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*
Probab=74.57 E-value=13 Score=35.45 Aligned_cols=81 Identities=20% Similarity=0.197 Sum_probs=53.5
Q ss_pred CCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHH
Q 010734 259 PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVR 338 (502)
Q Consensus 259 P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~ 338 (502)
-|.+-+|.-+.++|-. . .+.-.+++.++.+-+ ...++||++---.. |++|+....
T Consensus 85 Adevd~vinig~~~~g--~----------~~~v~~ei~~v~~a~----------~~~~lkvIlet~~l---~~e~i~~a~ 139 (220)
T 1ub3_A 85 ADEVDMVLHLGRAKAG--D----------LDYLEAEVRAVREAV----------PQAVLKVILETGYF---SPEEIARLA 139 (220)
T ss_dssp CSEEEEECCHHHHHTT--C----------HHHHHHHHHHHHHHS----------TTSEEEEECCGGGS---CHHHHHHHH
T ss_pred CCEEEecccchhhhCC--C----------HHHHHHHHHHHHHHH----------cCCCceEEEecCCC---CHHHHHHHH
Confidence 5778888888888732 1 222233444443332 33577777655333 589999999
Q ss_pred HHHHHcCCCeEEEcCccccCccchhH
Q 010734 339 NAAMAAGAFDAVVCSHHAHGGKGAVD 364 (502)
Q Consensus 339 ~~c~~~Gv~~~~vs~~wakGGeGa~e 364 (502)
+.|.++|+..+-.|+.|..||.--.+
T Consensus 140 ~ia~eaGADfVKTsTGf~~~gat~~d 165 (220)
T 1ub3_A 140 EAAIRGGADFLKTSTGFGPRGASLED 165 (220)
T ss_dssp HHHHHHTCSEEECCCSSSSCCCCHHH
T ss_pred HHHHHhCCCEEEeCCCCCCCCCCHHH
Confidence 99999999766677789888765543
No 35
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=74.41 E-value=9.2 Score=36.78 Aligned_cols=126 Identities=15% Similarity=0.156 Sum_probs=70.7
Q ss_pred cccHHHHHHHH--hhHHHHHHHHhhc--CCcEEEE--ecC-CCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhH
Q 010734 292 NENVALVEAGC--VNLARHIANTKAY--GANVVVA--VNM-FATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVD 364 (502)
Q Consensus 292 ~eNl~AL~~G~--~NL~kHIeNi~~f--GvPvVVA--INr-F~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~e 364 (502)
.-+..||+.|+ ......|+.+|+. .+|+++- .|. |...++.++ +.|.+.|+..+.+.+.= -.+
T Consensus 66 ~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~----~~~~~aGadgii~~d~~------~e~ 135 (268)
T 1qop_A 66 NANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFY----ARCEQVGVDSVLVADVP------VEE 135 (268)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHH----HHHHHHTCCEEEETTCC------GGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHH----HHHHHcCCCEEEEcCCC------HHH
Confidence 34456788886 3344677778775 7897764 363 555555444 45667899644443221 122
Q ss_pred HHHHHHHHhhcCCCCccccCCCCCCHHHHHHHHHH-Hh---------CCCce--eeCHHHHHHHHHHHHCCCCCCCeeE
Q 010734 365 LGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-SY---------GASGV--EYSEEAEKQIEMYTGQGFSGLPICM 431 (502)
Q Consensus 365 LA~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~-IY---------GA~~V--~fS~~A~kqLk~ie~~Gf~~LPVCm 431 (502)
.+.+++.+.+..-..-++..++.+. +.++.|+. .- |-.+. .|++...+.++++.+.- ++|||+
T Consensus 136 -~~~~~~~~~~~g~~~i~l~~p~t~~-~~i~~i~~~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~lr~~~--~~pi~v 210 (268)
T 1qop_A 136 -SAPFRQAALRHNIAPIFICPPNADD-DLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYH--AAPALQ 210 (268)
T ss_dssp -CHHHHHHHHHTTCEEECEECTTCCH-HHHHHHHHHCCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTT--CCCEEE
T ss_pred -HHHHHHHHHHcCCcEEEEECCCCCH-HHHHHHHhhCCCcEEEEecCCcCCCccCCCchHHHHHHHHHhcc--CCcEEE
Confidence 3445555554211233445555554 46777665 32 12222 45666677888888763 789987
No 36
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=74.28 E-value=6.9 Score=39.52 Aligned_cols=100 Identities=19% Similarity=0.215 Sum_probs=58.1
Q ss_pred cchhccccccccCCCC-CCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCC-cEE
Q 010734 243 GAEKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGA-NVV 320 (502)
Q Consensus 243 GaEKF~dIkcr~~gl~-P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGv-PvV 320 (502)
|-|+|. +....|+. .|++++|.-..- |... ..-..|+..++.+|+ |+|
T Consensus 90 Gh~~f~--~~~~~~~~~~D~~ilVvda~~-----g~~~-----------------------~qt~e~l~~~~~l~~~~ii 139 (408)
T 1s0u_A 90 GHETLM--ATMLSGASLMDGAILVIAANE-----PCPQ-----------------------PQTKEHLMALEILGIDKII 139 (408)
T ss_dssp SHHHHH--HHHHTTCSCCSEEEEEEETTS-----CSSC-----------------------HHHHHHHHHHHHTTCCCEE
T ss_pred CHHHHH--HHHHHhHhhCCEEEEEEECCC-----CCCC-----------------------chhHHHHHHHHHcCCCeEE
Confidence 456664 45556654 899999987541 1110 123346666667787 689
Q ss_pred EEecCCCCCCH----HHHHHHHHHHHHc---CCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 321 VAVNMFATDSK----AELNAVRNAAMAA---GAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 321 VAINrF~tDT~----~Ei~~v~~~c~~~---Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
|++|+-.--++ +..+.+++++++. ++. +..+. ++=|+|-.+|-+.+.+.+..
T Consensus 140 vv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~-~i~vS--A~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 140 IVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAP-IIPIS--AHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp EEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCC-EEEC--------CHHHHHHHHHHHSCC
T ss_pred EEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCe-EEEee--CCCCCCHHHHHHHHHHhCCC
Confidence 99999754332 2355667776652 443 44444 44578888888888876643
No 37
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=74.17 E-value=27 Score=32.53 Aligned_cols=106 Identities=12% Similarity=0.043 Sum_probs=65.3
Q ss_pred ccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEec---CCCC---CCHHH-------HHHHHHHHHHcCCCeEEEcCc--c
Q 010734 291 LNENVALVEAGCVNLARHIANTKAYGANVVVAVN---MFAT---DSKAE-------LNAVRNAAMAAGAFDAVVCSH--H 355 (502)
Q Consensus 291 ~~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAIN---rF~t---DT~~E-------i~~v~~~c~~~Gv~~~~vs~~--w 355 (502)
..++.+..++.+..+++.|+..+.+|.+.||.-- .|.. ++++. +..+.+.|++.|+. +++-++ |
T Consensus 92 ~~~d~~~r~~~~~~~~~~i~~a~~lGa~~v~~~~g~~~~~~~~p~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~~~~ 170 (287)
T 3kws_A 92 LSTDPAIRKECMDTMKEIIAAAGELGSTGVIIVPAFNGQVPALPHTMETRDFLCEQFNEMGTFAAQHGTS-VIFEPLNRK 170 (287)
T ss_dssp TBSSHHHHHHHHHHHHHHHHHHHHTTCSEEEECSCCTTCCSBCCSSHHHHHHHHHHHHHHHHHHHHTTCC-EEECCCCTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEEecCcc
Confidence 3456677788899999999999999999988732 2221 45444 44555677889996 777754 3
Q ss_pred ccCccchhHHHHHHHHHhhcCCCCccccCCC------CCCHHHHHHHHHH
Q 010734 356 AHGGKGAVDLGIAVQRACENVTQPLKFLYPL------DVSIKEKIDTIAR 399 (502)
Q Consensus 356 akGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~------~~sI~eKIe~IA~ 399 (502)
...--...+-+..+++.+. +.++.+.||. ..++.+=|+....
T Consensus 171 ~~~~~~~~~~~~~ll~~v~--~~~vg~~~D~~h~~~~g~d~~~~l~~~~~ 218 (287)
T 3kws_A 171 ECFYLRQVADAASLCRDIN--NPGVRCMGDFWHMTWEETSDMGAFISGGE 218 (287)
T ss_dssp TCSSCCCHHHHHHHHHHHC--CTTEEEEEEHHHHHHHCSCHHHHHHHHGG
T ss_pred cCcccCCHHHHHHHHHHcC--CCCeeEEeehHHHHhcCCCHHHHHHHhhh
Confidence 2111123344455666654 2346666542 3455566666554
No 38
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=74.01 E-value=9 Score=32.31 Aligned_cols=59 Identities=12% Similarity=-0.004 Sum_probs=41.6
Q ss_pred hcCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 314 AYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 314 ~fGvPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
..++|+++++|+..-..+. ..+.+.+++++.|+. +..+. ++=|+|-.+|-+.+.+.+.+
T Consensus 114 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 114 QHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLP-FMETS--AKTGLNVDLAFTAIAKELKR 174 (180)
T ss_dssp CTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCC-EEECC--TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCe-EEEEe--CCCCCCHHHHHHHHHHHHHH
Confidence 3689999999997653221 234456778888885 54443 56689999998888887754
No 39
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=73.97 E-value=4.7 Score=41.26 Aligned_cols=95 Identities=25% Similarity=0.255 Sum_probs=58.6
Q ss_pred CCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhh--cCCcEE-EEecCCCCCCH
Q 010734 255 SGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKA--YGANVV-VAVNMFATDSK 331 (502)
Q Consensus 255 ~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~--fGvPvV-VAINrF~tDT~ 331 (502)
.|.+|+++|||.... +++--|.+.. |+| .++.. -.+-..+..++. .|++|+ +++|.|.-|.+
T Consensus 250 ~g~~p~~vILv~~~~-~g~i~~~~~~----~~p------~l~~~----i~t~e~l~~~~~~~~~~~V~Gi~lN~~~~~~~ 314 (349)
T 2obn_A 250 RGSQPTQLVLVHRAG-QTHNGNNPHV----PIP------PLPEV----IRLYETVASGGGAFGTVPVVGIALNTAHLDEY 314 (349)
T ss_dssp HHHCCSEEEEEEETT-CCBCSSCTTS----BCC------CHHHH----HHHHHHHHHTTTTSCCCCEEEEEEECTTSCHH
T ss_pred HHcCCCeEEEEECCC-CceECCCCcc----CCC------CHHHH----HHHHHHHHHhhccCCCCcEEEEEEECCCCCHH
Confidence 356899999988643 4444344422 222 22211 122223444455 778876 67899999888
Q ss_pred HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHH
Q 010734 332 AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQ 370 (502)
Q Consensus 332 ~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv 370 (502)
++-+.+++.-++.|++ +.+.+.. |+-.|.++++
T Consensus 315 ~~~~~~~~ie~~~glP---v~d~~r~---g~~~l~~~~~ 347 (349)
T 2obn_A 315 AAKEAIAHTIAETGLP---CTDVVRF---GADVLLDAVM 347 (349)
T ss_dssp HHHHHHHHHHHHHCSC---EECHHHH---CSHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC---EEEEecC---CHHHHHHHHh
Confidence 8778888887889996 4567666 4555555554
No 40
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=73.23 E-value=5.5 Score=33.69 Aligned_cols=57 Identities=12% Similarity=0.031 Sum_probs=40.3
Q ss_pred cCCcEEEEecCCCCCC--HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 315 YGANVVVAVNMFATDS--KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 315 fGvPvVVAINrF~tDT--~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
.++|++|++|+..-.. +...+.+++++++.|+. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 122 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 122 ENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVN-YVETS--AKTRANVDKVFFDLMREIR 180 (187)
T ss_dssp TTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECC--TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECccccccCccCHHHHHHHHHHcCCe-EEEeC--CCCCCCHHHHHHHHHHHHH
Confidence 5899999999965322 12345667888888884 44333 5568898888888887764
No 41
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=72.75 E-value=15 Score=31.66 Aligned_cols=65 Identities=17% Similarity=0.131 Sum_probs=41.3
Q ss_pred HHHHHHhhc--CCcEEEEecCCCCCCHHH--------------HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHH
Q 010734 307 RHIANTKAY--GANVVVAVNMFATDSKAE--------------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQ 370 (502)
Q Consensus 307 kHIeNi~~f--GvPvVVAINrF~tDT~~E--------------i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv 370 (502)
+.++.++++ ++|+|+++|+-.-..+.+ .+...+++++.|...+..+ =++=|+|-.+|-+.++
T Consensus 111 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--Sa~~g~gi~~l~~~l~ 188 (194)
T 2atx_A 111 EWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC--SALTQKGLKTVFDEAI 188 (194)
T ss_dssp THHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC--CTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEe--eCCCCCCHHHHHHHHH
Confidence 344555554 899999999965433221 2455677777776224333 3456788888887777
Q ss_pred HHh
Q 010734 371 RAC 373 (502)
Q Consensus 371 ~a~ 373 (502)
+.+
T Consensus 189 ~~i 191 (194)
T 2atx_A 189 IAI 191 (194)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 42
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=72.62 E-value=9.9 Score=31.41 Aligned_cols=56 Identities=9% Similarity=-0.013 Sum_probs=37.8
Q ss_pred cCCcEEEEecCCCCCCHHH--HHHHHHHHHHc-CCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 315 YGANVVVAVNMFATDSKAE--LNAVRNAAMAA-GAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~E--i~~v~~~c~~~-Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
.++|+++++|+..-..+.+ .+.+.+++++. +. .+.. .=++=|+|-.+|-+.+.+.+
T Consensus 107 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~--~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 107 EDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNC-AFLE--SSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSC-EEEE--CBTTTTBSHHHHHHHHHHHH
T ss_pred CCCcEEEEEECccccccccCCHHHHHHHHHHccCC-cEEE--ecCCCCCCHHHHHHHHHHHH
Confidence 5899999999975432221 34566777776 55 3433 33567889888888877765
No 43
>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413}
Probab=72.51 E-value=9.6 Score=36.69 Aligned_cols=156 Identities=11% Similarity=0.082 Sum_probs=88.9
Q ss_pred ccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEe-----cC
Q 010734 251 KCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAV-----NM 325 (502)
Q Consensus 251 kcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAI-----Nr 325 (502)
.++..||+|-+++-+. |.. .. -.+..++-+.-++.+..++++|+..+.+|.++|+.. .+
T Consensus 73 ~l~~~gL~~~~i~~~~-------~~~-~~--------~~l~~~d~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~g~ 136 (335)
T 2qw5_A 73 YLDSEGLENVKISTNV-------GAT-RT--------FDPSSNYPEQRQEALEYLKSRVDITAALGGEIMMGPIVIPYGV 136 (335)
T ss_dssp HHHHTTCTTCEEEEEC-------CCC-SS--------SCTTCSSHHHHHHHHHHHHHHHHHHHHTTCSEEEECCSSCTTC
T ss_pred HHHHCCCCcceeEEEe-------ccC-CC--------CCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEeccccCcccc
Confidence 4788899976555431 110 00 112345666778899999999999999999999642 45
Q ss_pred CCCC--------------CHHH-------HHHHHHHHHHcCCCeEEEcCccccCcc--chhHHHHHHHHHhhcCCCCccc
Q 010734 326 FATD--------------SKAE-------LNAVRNAAMAAGAFDAVVCSHHAHGGK--GAVDLGIAVQRACENVTQPLKF 382 (502)
Q Consensus 326 F~tD--------------T~~E-------i~~v~~~c~~~Gv~~~~vs~~wakGGe--Ga~eLA~~Vv~a~e~~~~~fk~ 382 (502)
|+.. +++. +..+.+.+++.|+. .++-++..-.+. ...+-+.++++.+. +..+..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~~~~~~~~~~t~~~~~~ll~~v~--~~~vgl 213 (335)
T 2qw5_A 137 FPTTDFNEPIWSDELQEHLKVRYANAQPILDKLGEYAEIKKVK-LAIEPITHWETPGPNKLSQLIEFLKGVK--SKQVGV 213 (335)
T ss_dssp CCBCTTCCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCE-EEECCCCTTTCSSCCSHHHHHHHHTTCC--CTTEEE
T ss_pred ccCCcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHcCCE-EEEeeCCcccccccCCHHHHHHHHHhcC--CCCeeE
Confidence 5432 3333 44556677788995 777766321111 12233334444443 234666
Q ss_pred cCCC------CCCHH---HHHHHHH--H-Hh------------CCCceeeCHHHHHHHHHHHHCCCCCCCeeE
Q 010734 383 LYPL------DVSIK---EKIDTIA--R-SY------------GASGVEYSEEAEKQIEMYTGQGFSGLPICM 431 (502)
Q Consensus 383 LY~~------~~sI~---eKIe~IA--~-IY------------GA~~V~fS~~A~kqLk~ie~~Gf~~LPVCm 431 (502)
+||. ..++. +=|++.. . |+ |-..|.| ..-++.+.+ ||+. |+++
T Consensus 214 ~~D~~H~~~~g~d~~~~~~~l~~~~~~~ri~~vHlkD~~~~~~G~G~id~----~~i~~~L~~-gy~G-~~~~ 280 (335)
T 2qw5_A 214 VIDSAHEILDGEGPEIFKTQVEYLAQQGRLHYVQVSPPDRGALHTSWLPW----KSFLTPIVK-VYDG-PIAV 280 (335)
T ss_dssp EEEHHHHHHHCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSCSSSSCCCH----HHHHHHHHH-HCCS-CEEE
T ss_pred EEecccchhccCChHHHHHHHHHhCCcCCEEEEEECCCCCCCCCCCCcCH----HHHHHHHHc-cCCc-cEEE
Confidence 5543 33555 5566666 3 32 2333333 345566777 8865 5554
No 44
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=72.33 E-value=9.3 Score=33.07 Aligned_cols=57 Identities=14% Similarity=0.041 Sum_probs=40.2
Q ss_pred cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 315 YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~--~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
.++|+||++|+..-..+ ...+.+++++++.|+. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 118 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 118 ENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVN-YVETS--AKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEEC--TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeccCccccccccHHHHHHHHHHhCCe-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 58999999999765332 2245677888888884 44333 4568888888888877764
No 45
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=72.21 E-value=9.4 Score=35.62 Aligned_cols=95 Identities=9% Similarity=0.048 Sum_probs=61.8
Q ss_pred HHHHHHhhHHHHHHHHhhcCCcEEEEe-cCCCCCCHHH-------HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHH
Q 010734 297 LVEAGCVNLARHIANTKAYGANVVVAV-NMFATDSKAE-------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIA 368 (502)
Q Consensus 297 AL~~G~~NL~kHIeNi~~fGvPvVVAI-NrF~tDT~~E-------i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~ 368 (502)
.-++.+..+++.|+..+.+|.+.||.. -..+.++++. +..+.+.|++.|+. +++-+++ ...+-+..
T Consensus 96 ~r~~~~~~~~~~i~~a~~lG~~~v~~~~G~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~~-----~~~~~~~~ 169 (290)
T 3tva_A 96 TRASRVAEMKEISDFASWVGCPAIGLHIGFVPESSSPDYSELVRVTQDLLTHAANHGQA-VHLETGQ-----ESADHLLE 169 (290)
T ss_dssp THHHHHHHHHHHHHHHHHHTCSEEEECCCCCCCTTSHHHHHHHHHHHHHHHHHHTTTCE-EEEECCS-----SCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcccchHHHHHHHHHHHHHHHHHHHcCCE-EEEecCC-----CCHHHHHH
Confidence 345667899999999999999999974 3344444333 44556677788995 8887775 23455566
Q ss_pred HHHHhhcCCCCccccCCC-------CCCHHHHHHHHHH
Q 010734 369 VQRACENVTQPLKFLYPL-------DVSIKEKIDTIAR 399 (502)
Q Consensus 369 Vv~a~e~~~~~fk~LY~~-------~~sI~eKIe~IA~ 399 (502)
+++.+. +.++.+.||. +.++.+=|++...
T Consensus 170 l~~~~~--~~~~g~~~D~~h~~~~g~~d~~~~l~~~~~ 205 (290)
T 3tva_A 170 FIEDVN--RPNLGINFDPANMILYGTGNPIEALRKVAR 205 (290)
T ss_dssp HHHHHC--CTTEEEEECHHHHHHTTCSCHHHHHHHHGG
T ss_pred HHHhcC--CCCEEEEeccHHHHHhCCCCHHHHHHHHHh
Confidence 777764 2456766652 2344555555543
No 46
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=72.07 E-value=8.5 Score=39.89 Aligned_cols=95 Identities=22% Similarity=0.288 Sum_probs=49.5
Q ss_pred cchhccccccccCCCC-CCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHh---hHHHHHHHHhhcCCc
Q 010734 243 GAEKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCV---NLARHIANTKAYGAN 318 (502)
Q Consensus 243 GaEKF~dIkcr~~gl~-P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~---NL~kHIeNi~~fGvP 318 (502)
|-|+|. +-+..|+. .|++|+|.-..- | ..+.||. ....|+..++..|+|
T Consensus 130 Gh~~f~--~~~~~~~~~aD~~ilVvDa~~-----g--------------------~~e~sf~~~~qt~e~l~~~~~~~vp 182 (467)
T 1r5b_A 130 GHKGYV--TNMINGASQADIGVLVISARR-----G--------------------EFEAGFERGGQTREHAVLARTQGIN 182 (467)
T ss_dssp C-------------TTSCSEEEEEEECST-----T--------------------HHHHTTSTTCCHHHHHHHHHHTTCS
T ss_pred CcHHHH--HHHHhhcccCCEEEEEEeCCc-----C--------------------ccccccCCCCcHHHHHHHHHHcCCC
Confidence 445664 44555655 899999987541 1 1122332 356788888889998
Q ss_pred -EEEEecCCCCCC----HHHHH----HHHHHHHHc-CCC---eEEEcCccccCccchhH
Q 010734 319 -VVVAVNMFATDS----KAELN----AVRNAAMAA-GAF---DAVVCSHHAHGGKGAVD 364 (502)
Q Consensus 319 -vVVAINrF~tDT----~~Ei~----~v~~~c~~~-Gv~---~~~vs~~wakGGeGa~e 364 (502)
+||++|+-.-.+ ++.++ .+++++++. |.. .+.+-..=++-|+|-.+
T Consensus 183 ~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~ 241 (467)
T 1r5b_A 183 HLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKD 241 (467)
T ss_dssp SEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSS
T ss_pred EEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccc
Confidence 999999976532 33333 456666666 653 22222333455666443
No 47
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=71.91 E-value=6.9 Score=33.95 Aligned_cols=69 Identities=12% Similarity=0.060 Sum_probs=43.8
Q ss_pred hhHHHHHHHHhh---cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 303 VNLARHIANTKA---YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 303 ~NL~kHIeNi~~---fGvPvVVAINrF~tDT~~E--i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
.++.+.++.+++ .++|++|++|+..-..+.+ .+.+++++++.|+. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 110 ~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 110 NHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLI-FMETS--AKTACNVEEAFINTAKEIY 183 (191)
T ss_dssp HTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEEC--TTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 344444444444 4899999999975432211 34556788888884 44333 4567888887777766654
No 48
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=71.23 E-value=5.4 Score=33.47 Aligned_cols=57 Identities=14% Similarity=0.043 Sum_probs=38.5
Q ss_pred hcCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 314 AYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 314 ~fGvPvVVAINrF~tDT~~E--i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
..++|++|++|+..-..+.+ .+..++++++.++. +..+ =++-|+|-.+|-+.+.+.+
T Consensus 117 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 117 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM-FIET--SAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEEE--BTTTTBSHHHHHHHHHHTC
T ss_pred CCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCe-EEEE--eCCCCCCHHHHHHHHHHHH
Confidence 35899999999965432222 34556777888874 4433 3566888888888877655
No 49
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=71.21 E-value=7.2 Score=40.15 Aligned_cols=25 Identities=32% Similarity=0.195 Sum_probs=22.6
Q ss_pred HHHHHhhHHHHHHHHhhcCCcEEEE
Q 010734 298 VEAGCVNLARHIANTKAYGANVVVA 322 (502)
Q Consensus 298 L~~G~~NL~kHIeNi~~fGvPvVVA 322 (502)
-++.++|+++||+++.++|+++|+.
T Consensus 99 r~~~ie~~k~~i~~aa~lGi~~v~~ 123 (386)
T 3bdk_A 99 RDALIENYKTSIRNVGAAGIPVVCY 123 (386)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 6788999999999999999998764
No 50
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=70.94 E-value=8.2 Score=32.19 Aligned_cols=71 Identities=13% Similarity=0.016 Sum_probs=46.3
Q ss_pred HhhHHHHHHHHhh----cCCcEEEEecCCCCCC--HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 302 CVNLARHIANTKA----YGANVVVAVNMFATDS--KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 302 ~~NL~kHIeNi~~----fGvPvVVAINrF~tDT--~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
+.++...+..+.+ .++|+|+++|+-.-.. +...+...+++++.|+. +..+ =++-|+|-.+|-+.+++.+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 91 FSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCK-HIET--SAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp HHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEEC--BTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCc-EEEe--cCccCCCHHHHHHHHHHHHHh
Confidence 3444444444444 3899999999965321 22234556788888884 4433 356789999988888877653
No 51
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=70.91 E-value=5 Score=41.03 Aligned_cols=95 Identities=19% Similarity=0.241 Sum_probs=55.7
Q ss_pred cchhccccccccCCC-CCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCc-EE
Q 010734 243 GAEKFMNIKCRYSGL-TPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGAN-VV 320 (502)
Q Consensus 243 GaEKF~dIkcr~~gl-~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvP-vV 320 (502)
|-|+|.. -...++ ..|++|+|.-... | ..+.+..=.....+|+..++.+|+| +|
T Consensus 93 G~~~f~~--~~~~~~~~aD~~ilVvDa~~-----g-----------------sfe~~~~~~~qt~~~~~~~~~~~~~~ii 148 (435)
T 1jny_A 93 GHRDFVK--NMITGASQADAAILVVSAKK-----G-----------------EYEAGMSVEGQTREHIILAKTMGLDQLI 148 (435)
T ss_dssp SSTTHHH--HHHHTSSCCSEEEEEEECST-----T-----------------HHHHHHSTTCHHHHHHHHHHHTTCTTCE
T ss_pred CcHHHHH--HHHhhhhhcCEEEEEEECCC-----C-----------------ccccccccchHHHHHHHHHHHcCCCeEE
Confidence 4455543 233344 3899999887541 1 1112222234678899999999985 88
Q ss_pred EEecCCCCCC----HHH----HHHHHHHHHHcCCC----eEEEcCccccCccchh
Q 010734 321 VAVNMFATDS----KAE----LNAVRNAAMAAGAF----DAVVCSHHAHGGKGAV 363 (502)
Q Consensus 321 VAINrF~tDT----~~E----i~~v~~~c~~~Gv~----~~~vs~~wakGGeGa~ 363 (502)
|++|+..-.+ ++. .+.+++++++.|.. .+..+..+ =|+|-.
T Consensus 149 vviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~--~g~~v~ 201 (435)
T 1jny_A 149 VAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAP--SGDNIT 201 (435)
T ss_dssp EEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTT--TTBTTT
T ss_pred EEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecc--cCcccc
Confidence 9999965433 333 34567777777731 34444443 466643
No 52
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=70.67 E-value=4.3 Score=33.68 Aligned_cols=68 Identities=7% Similarity=0.059 Sum_probs=43.9
Q ss_pred hhHHHHHHHHhh---cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 303 VNLARHIANTKA---YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 303 ~NL~kHIeNi~~---fGvPvVVAINrF~tDT~--~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
.++.+.++.+.+ -++|+|++.|+-.-..+ .+.+.+++++++.++. +..+ =++=|+|-.+|-+.+.+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 95 ARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLL-FMET--SAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEC--CTTTCTTHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCe-EEEE--eCCCCCCHHHHHHHHHHHH
Confidence 344445555544 37999999999653221 2235567788888874 4433 3566888888888877655
No 53
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=70.66 E-value=4.1 Score=35.53 Aligned_cols=69 Identities=19% Similarity=0.180 Sum_probs=44.9
Q ss_pred hHHHHHHHHhh---cCCcEEEEecCCCCCC--HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 304 NLARHIANTKA---YGANVVVAVNMFATDS--KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 304 NL~kHIeNi~~---fGvPvVVAINrF~tDT--~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
++.+.++.+++ .++|+++++|+-.-.. +...+.+++++++.|+. +..+. ++=|+|-.+|-+.+.+.+.+
T Consensus 113 ~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 113 TLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAI-VVETS--AKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCE-EEECB--TTTTBSHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEe--CCCCcCHHHHHHHHHHHHHh
Confidence 34444444444 4899999999965422 11235567888888874 44333 56689999998888877643
No 54
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=70.54 E-value=8 Score=33.79 Aligned_cols=68 Identities=10% Similarity=0.095 Sum_probs=42.2
Q ss_pred hHHHHHHHHhh---cCCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 304 NLARHIANTKA---YGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 304 NL~kHIeNi~~---fGvPvVVAINrF~tDT-~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
++.+.++.++. .++|++|++|+-.-.. ....+.+.+++++.|+. +..+. ++=|+|-.+|-+.+.+.+.
T Consensus 110 ~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 110 NIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIP-FIESS--AKNDDNVNEIFFTLAKLIQ 181 (213)
T ss_dssp THHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCC-EEECB--TTTTBSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 34444444444 4899999999975421 11223456677778885 44443 5567888887777766654
No 55
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=70.48 E-value=6 Score=32.98 Aligned_cols=57 Identities=14% Similarity=0.137 Sum_probs=39.0
Q ss_pred hcCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 314 AYGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 314 ~fGvPvVVAINrF~tDT~--~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
..++|+++++|+..-..+ ...+.+++++++.|+. +..+ =++=|+|-.+|-+.+.+.+
T Consensus 109 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 109 GNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAK-HYHT--SAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEE--BTTTTBSHHHHHHHHHHHH
T ss_pred CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCe-EEEe--cCCCCCCHHHHHHHHHHHH
Confidence 368999999999654221 1234567788888874 4332 3566788888888887765
No 56
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=70.04 E-value=13 Score=37.47 Aligned_cols=69 Identities=14% Similarity=0.056 Sum_probs=46.8
Q ss_pred hhHHHHHHHHhhcCC-cEEEEecCCCCCCHHHHHHHHHHHH----Hc---CCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 303 VNLARHIANTKAYGA-NVVVAVNMFATDSKAELNAVRNAAM----AA---GAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 303 ~NL~kHIeNi~~fGv-PvVVAINrF~tDT~~Ei~~v~~~c~----~~---Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
.....|+..++.+|+ |+||++|+-.--++++.+...+..+ +. ++. +.... ++=|+|-.+|-+.+.+.+.
T Consensus 115 ~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~-ii~vS--A~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 115 PQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVP-IIPVS--ALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCC-EEECB--TTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCE-EEEEE--CCCCcChHHHHHHHHHhCC
Confidence 456778888888887 8999999987666666544433332 22 443 44443 4558898899888887664
No 57
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=69.92 E-value=8.7 Score=33.65 Aligned_cols=59 Identities=15% Similarity=0.039 Sum_probs=40.8
Q ss_pred hhcCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 313 KAYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 313 ~~fGvPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
...++|++|++|+-.-..+. ..+.+++++++.|+. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 110 ~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 110 ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMP-FLETS--ALDSTNVEDAFLTMARQIK 170 (206)
T ss_dssp SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC-EEECC--TTTCTTHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCe-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 34579999999997553322 234566788888885 44333 5668888888888877765
No 58
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=69.87 E-value=18 Score=30.89 Aligned_cols=70 Identities=11% Similarity=0.020 Sum_probs=47.2
Q ss_pred hhHHHHHHHHhh----cCCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 303 VNLARHIANTKA----YGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 303 ~NL~kHIeNi~~----fGvPvVVAINrF~tDT-~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
.++.+.++.+.+ .++|+++++|+-.-.. +...+.+.+++++.++. +..+. ++=|+|-.+|-+.+++.+.+
T Consensus 104 ~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 104 VKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSML-FIEAS--AKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp HTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCE-EEECC--TTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCE-EEEec--CCCCCCHHHHHHHHHHHHHh
Confidence 455555666665 4799999999975422 11234566788888884 54443 45689998988888887754
No 59
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=69.51 E-value=10 Score=33.51 Aligned_cols=70 Identities=16% Similarity=0.072 Sum_probs=46.6
Q ss_pred HhhHHHHHHHHhh----cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 302 CVNLARHIANTKA----YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 302 ~~NL~kHIeNi~~----fGvPvVVAINrF~tDT~~E--i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
+.++...++.++. .++|+||++|+..-..+.+ .+.+.++|++.|+. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 123 ~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 123 FLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIP-YFETS--AATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp HHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC-EEEEB--TTTTBTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCc-EEEEE--CCCCCCHHHHHHHHHHHHH
Confidence 3455566666655 5799999999975433222 35667888888986 43332 4567888888777776654
No 60
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=69.35 E-value=11 Score=38.84 Aligned_cols=97 Identities=19% Similarity=0.233 Sum_probs=55.6
Q ss_pred cchhccccccccCCCC-CCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHH---hhHHHHHHHHhhcCCc
Q 010734 243 GAEKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGC---VNLARHIANTKAYGAN 318 (502)
Q Consensus 243 GaEKF~dIkcr~~gl~-P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~---~NL~kHIeNi~~fGvP 318 (502)
|-|+|. +-...|+. .|++++|.-.+- |.. +.|| .....|+..++..|+|
T Consensus 104 Gh~~f~--~~~~~~~~~aD~~ilVVDa~~-----g~~--------------------e~~~~~~~qt~e~l~~~~~~~v~ 156 (439)
T 3j2k_7 104 GHKSFV--PNMIGGASQADLAVLVISARK-----GEF--------------------ETGFEKGGQTREHAMLAKTAGVK 156 (439)
T ss_pred ChHHHH--HHHHhhHhhCCEEEEEEECCC-----Ccc--------------------ccccCCCchHHHHHHHHHHcCCC
Confidence 446663 44555554 899999987541 110 1122 2567788889999999
Q ss_pred -EEEEecCCCCCC----HHHH----HHHHHHHHHcCCC---eEEEcCccccCccchhHHH
Q 010734 319 -VVVAVNMFATDS----KAEL----NAVRNAAMAAGAF---DAVVCSHHAHGGKGAVDLG 366 (502)
Q Consensus 319 -vVVAINrF~tDT----~~Ei----~~v~~~c~~~Gv~---~~~vs~~wakGGeGa~eLA 366 (502)
+||++|+-.-.+ ++.. +.+.+++++.|.. .+.+-..=+.=|+|-.+|-
T Consensus 157 ~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~ 216 (439)
T 3j2k_7 157 HLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQS 216 (439)
T ss_pred eEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCccccccc
Confidence 999999975421 2223 3344556666652 1122223344567766643
No 61
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=69.17 E-value=13 Score=31.59 Aligned_cols=63 Identities=13% Similarity=0.152 Sum_probs=41.4
Q ss_pred HHHhhcCCcEEEEecCCCCCCHHH----HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 310 ANTKAYGANVVVAVNMFATDSKAE----LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 310 eNi~~fGvPvVVAINrF~tDT~~E----i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
+.++.+++|++|++|+..--+++| .+.+++++...+...+.. .=++-|+|-.+|-+.+.+.+.
T Consensus 127 ~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 127 EWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIP--TSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp HHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEE--CCTTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEE--EecCCCCCHHHHHHHHHHHhh
Confidence 345556999999999975433333 345566666545322433 336778999999888888764
No 62
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=68.78 E-value=22 Score=35.08 Aligned_cols=57 Identities=12% Similarity=0.145 Sum_probs=45.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 316 GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 316 GvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
+.|+++++|+-.-....+++.+.+++++.+.. +..+. ++=|+|-.+|-+.+.+.+..
T Consensus 280 ~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~iS--A~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 280 DLPFLVVINKIDVADEENIKRLEKFVKEKGLN-PIKIS--ALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TSCEEEEECCTTTCCHHHHHHHHHHHHHTTCC-CEECB--TTTTBTHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECcccCChHHHHHHHHHHHhcCCC-eEEEe--CCCCcCHHHHHHHHHHHHHH
Confidence 89999999999888888888888888888875 33332 56689999999998888753
No 63
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=68.75 E-value=18 Score=32.43 Aligned_cols=56 Identities=9% Similarity=0.043 Sum_probs=37.6
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCC--CCCHHHHHHHHHHHHHcCC-CeEEEcCccccCc
Q 010734 304 NLARHIANTKAYGANVVVAVNMFA--TDSKAELNAVRNAAMAAGA-FDAVVCSHHAHGG 359 (502)
Q Consensus 304 NL~kHIeNi~~fGvPvVVAINrF~--tDT~~Ei~~v~~~c~~~Gv-~~~~vs~~wakGG 359 (502)
...+-|+.+++.|+++.+-..-.+ .|+.+|++.+.+++++.|. ..+.+.....-|+
T Consensus 148 ~~~~~i~~l~~~g~~v~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (245)
T 3c8f_A 148 RTLEFAKYLANKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGK 206 (245)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEECTTTTCCHHHHHHHHHHHHHHCCEEEEEEEECCCCSH
T ss_pred HHHHHHHHHHhcCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCceeEEEeccccCh
Confidence 444455666677888766544343 5899999999999999994 4444544444443
No 64
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=68.74 E-value=4.8 Score=36.21 Aligned_cols=69 Identities=9% Similarity=-0.072 Sum_probs=43.0
Q ss_pred hHHHHHHHHhh---cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 304 NLARHIANTKA---YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 304 NL~kHIeNi~~---fGvPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
++.+.++.++. .++|+||++|+..-..+. ..+.+.+++++.|+. +..+. ++=|+|-.+|-+.+++.+.+
T Consensus 103 ~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 103 NCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLL-FTETS--ALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp HHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCE-EEECC--CC-CCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHHHH
Confidence 34444444444 489999999997532211 124456788888874 54443 56688998998888887754
No 65
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=68.29 E-value=8 Score=31.80 Aligned_cols=57 Identities=14% Similarity=0.035 Sum_probs=39.5
Q ss_pred cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 315 YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~--~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
.++|+++++|+..-..+ ...+.+++++++.|+. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 108 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 108 ENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVN-YVETS--AKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp TTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEECC--TTTCTTHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECccccccCccCHHHHHHHHHHcCCe-EEEeC--CCCCCCHHHHHHHHHHHHH
Confidence 58999999999654222 2245567788888874 44433 5668898888888877664
No 66
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=67.38 E-value=13 Score=32.81 Aligned_cols=56 Identities=5% Similarity=0.012 Sum_probs=37.8
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCC--CCCHHHHHHHHHHHHHc-CC-CeEEEcCccccCc
Q 010734 304 NLARHIANTKAYGANVVVAVNMFA--TDSKAELNAVRNAAMAA-GA-FDAVVCSHHAHGG 359 (502)
Q Consensus 304 NL~kHIeNi~~fGvPvVVAINrF~--tDT~~Ei~~v~~~c~~~-Gv-~~~~vs~~wakGG 359 (502)
...+-|+.+++.|+++.|...-.+ .|+.+|++.+.+++++. |+ ..+.+.....-|.
T Consensus 80 ~i~~~i~~l~~~g~~v~i~~~v~~~~n~n~~~~~~~~~~~~~~~g~~~~~~l~~~~p~g~ 139 (182)
T 3can_A 80 LILKNIRRVAEADFPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPYHDIGK 139 (182)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECBTTTCSHHHHHHHHHHHHHSSSCCSEEEEEECCC---
T ss_pred HHHHHHHHHHhCCCeEEEEEEEECCCCCCHHHHHHHHHHHHhCcCccceEEEecCcccCH
Confidence 444445555667888877765554 38999999999999998 97 6566654444443
No 67
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=67.32 E-value=12 Score=37.07 Aligned_cols=84 Identities=19% Similarity=0.236 Sum_probs=40.4
Q ss_pred hhHHHHHHHHhhcCCcE-EEEecCCCCC-C---------HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 010734 303 VNLARHIANTKAYGANV-VVAVNMFATD-S---------KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 371 (502)
Q Consensus 303 ~NL~kHIeNi~~fGvPv-VVAINrF~tD-T---------~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~ 371 (502)
...+|-++.++++|+|+ =|.+|+.... + +.+-+.+.+.+++.+......--....-=.|-..|.+ +.
T Consensus 252 ~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~iPl~~~e~~g~~~L~~-~~- 329 (349)
T 3ug7_A 252 LESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKVIAYVPLLRTEAKGIETLKQ-IA- 329 (349)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTSEEEEEECCSSCSCSHHHHHH-HH-
T ss_pred HHHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCCcEEEecCCCCCCCCHHHHHH-HH-
Confidence 45667788888999999 5778974332 2 2345667777777777533333333333334333321 11
Q ss_pred HhhcCCCCccccCCCCCCHHHHHHHH
Q 010734 372 ACENVTQPLKFLYPLDVSIKEKIDTI 397 (502)
Q Consensus 372 a~e~~~~~fk~LY~~~~sI~eKIe~I 397 (502)
+.||..++|..+||+.+
T Consensus 330 ---------~~l~~~~~~~~~~~~~~ 346 (349)
T 3ug7_A 330 ---------KILYGEEEKEEQKIEQK 346 (349)
T ss_dssp ---------HHHC-------------
T ss_pred ---------HHHcCCCCccccccccc
Confidence 34677777777777764
No 68
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=67.29 E-value=19 Score=31.73 Aligned_cols=66 Identities=14% Similarity=0.002 Sum_probs=43.8
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHHHHH----HHHHHHHHc-----CCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 309 IANTKAYGANVVVAVNMFATDSKAELN----AVRNAAMAA-----GAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 309 IeNi~~fGvPvVVAINrF~tDT~~Ei~----~v~~~c~~~-----Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
++.+++.++|+|+++|+-.-.++++++ .+++.+.+. +. ...+-..=++-|+|-.+|-+.+.+.+..
T Consensus 137 ~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 137 IEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAG-KLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp HHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCS-CEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred HHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCC-CCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 455667999999999998766666643 334444442 11 1223334467899999999999888754
No 69
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=67.25 E-value=9 Score=33.36 Aligned_cols=68 Identities=13% Similarity=-0.019 Sum_probs=43.8
Q ss_pred hHHHHHHHHhh---cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 304 NLARHIANTKA---YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 304 NL~kHIeNi~~---fGvPvVVAINrF~tDT~--~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
++...++.++. .++|+|+++|+..-..+ ...+.+++++++.|+. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 98 ~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 98 AVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFE-FFEAS--AKDNINVKQTFERLVDVIC 170 (203)
T ss_dssp HHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCE-EEECB--TTTTBSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCe-EEEEE--CCCCCCHHHHHHHHHHHHH
Confidence 44444444444 58999999999754322 1234567778888884 44433 4567888887777776654
No 70
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=67.03 E-value=23 Score=32.23 Aligned_cols=90 Identities=10% Similarity=0.058 Sum_probs=55.3
Q ss_pred cHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCC---CCHHH-------HHHHHHHHHHcCCCeEEEcCccccC-ccch
Q 010734 294 NVALVEAGCVNLARHIANTKAYGANVVVAVNMFAT---DSKAE-------LNAVRNAAMAAGAFDAVVCSHHAHG-GKGA 362 (502)
Q Consensus 294 Nl~AL~~G~~NL~kHIeNi~~fGvPvVVAINrF~t---DT~~E-------i~~v~~~c~~~Gv~~~~vs~~wakG-GeGa 362 (502)
+-+.-++....+++.|+..+.+|.+.||..=-+.. +.++. +..+.+.+++.|+. +++-+++..+ --..
T Consensus 75 ~~~~~~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lEn~~~~~~~~~~ 153 (278)
T 1i60_A 75 DEKGHNEIITEFKGMMETCKTLGVKYVVAVPLVTEQKIVKEEIKKSSVDVLTELSDIAEPYGVK-IALEFVGHPQCTVNT 153 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCBCSSCCCHHHHHHHHHHHHHHHHHHHGGGTCE-EEEECCCCTTBSSCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCE-EEEEecCCccchhcC
Confidence 44556778889999999999999999988422221 22332 34455566678995 7777776442 1122
Q ss_pred hHHHHHHHHHhhcCCCCccccCCC
Q 010734 363 VDLGIAVQRACENVTQPLKFLYPL 386 (502)
Q Consensus 363 ~eLA~~Vv~a~e~~~~~fk~LY~~ 386 (502)
.+-+..+++.+. ..++...||.
T Consensus 154 ~~~~~~l~~~~~--~~~~g~~~D~ 175 (278)
T 1i60_A 154 FEQAYEIVNTVN--RDNVGLVLDS 175 (278)
T ss_dssp HHHHHHHHHHHC--CTTEEEEEEH
T ss_pred HHHHHHHHHHhC--CCCeeEEEEe
Confidence 334455666654 2346666653
No 71
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=66.70 E-value=5.6 Score=36.75 Aligned_cols=121 Identities=11% Similarity=0.069 Sum_probs=71.9
Q ss_pred HhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCcc
Q 010734 302 CVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLK 381 (502)
Q Consensus 302 ~~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk 381 (502)
...+++.|+..+.+|.+.||.- +. .+.++.+.+.|++.|+. +++-+++-++.- ..=.+.+.+.++....++.
T Consensus 88 ~~~~~~~i~~A~~lGa~~v~~~---p~--~~~l~~l~~~a~~~gv~-l~lEn~~~~~~~--~~~~~~~~~ll~~~~p~vg 159 (257)
T 3lmz_A 88 EEEIDRAFDYAKRVGVKLIVGV---PN--YELLPYVDKKVKEYDFH-YAIHLHGPDIKT--YPDATDVWVHTKDLDPRIG 159 (257)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEE---EC--GGGHHHHHHHHHHHTCE-EEEECCCTTCSS--SCSHHHHHHHHTTSCTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEec---CC--HHHHHHHHHHHHHcCCE-EEEecCCCcccc--cCCHHHHHHHHHhCCCCcc
Confidence 3578899999999999999963 33 46788899999999995 888888533221 1112333334432223566
Q ss_pred ccCC------CCCCHHHHHHHHHH-Hh--CCCceee--------C-----HHHHHHHHHHHHCCCCCCCeeE
Q 010734 382 FLYP------LDVSIKEKIDTIAR-SY--GASGVEY--------S-----EEAEKQIEMYTGQGFSGLPICM 431 (502)
Q Consensus 382 ~LY~------~~~sI~eKIe~IA~-IY--GA~~V~f--------S-----~~A~kqLk~ie~~Gf~~LPVCm 431 (502)
+.|| ...++.+=|+.... |+ ..+++.. . -.-++-++.+++.||+. |+++
T Consensus 160 ~~~D~~h~~~~g~d~~~~l~~~~~~i~~vHl~D~~~~~~~~~~~~~G~G~id~~~~~~~L~~~gy~g-~~~l 230 (257)
T 3lmz_A 160 MCLDVGHDLRNGCDPVADLKKYHTRVFDMHIKDVTDSSKAGVGIEIGRGKIDFPALIRMMREVNYTG-MCSL 230 (257)
T ss_dssp EEEEHHHHHHTTCCHHHHHHHHGGGEEEEEECEESCSSTTCCEECTTSSSCCHHHHHHHHHHTTCCS-EEEE
T ss_pred EEEchhhHHHcCCCHHHHHHHhhcceeEEeecccccccCCCCccccCCCccCHHHHHHHHHHcCCCc-eEEE
Confidence 6654 23355666666554 32 2222221 0 01345566777778876 4443
No 72
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*
Probab=66.23 E-value=17 Score=33.57 Aligned_cols=115 Identities=9% Similarity=0.137 Sum_probs=69.2
Q ss_pred ccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEe-cCCCC-
Q 010734 251 KCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAV-NMFAT- 328 (502)
Q Consensus 251 kcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAI-NrF~t- 328 (502)
.++..|+++.++.+ |+.-. . .+..+|.+..++....+++.|+..+.+|.+.||.- .....
T Consensus 55 ~l~~~gl~~~~~~~---------h~~~~-~--------~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~ 116 (287)
T 2x7v_A 55 EMKKHGIDWENAFC---------HSGYL-I--------NLASPKDDIWQKSVELLKKEVEICRKLGIRYLNIHPGSHLGT 116 (287)
T ss_dssp HHHHHTCCGGGEEE---------ECCTT-C--------CTTCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEECCEECTTS
T ss_pred HHHHcCCCcceeEE---------ecccc-c--------ccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCC
Confidence 46778888765533 33211 1 12345667778889999999999999999998762 23333
Q ss_pred CCHHHH----HHHHHHHHH-cCCCeEEEcCccccCcc--chhHHHHHHHHHhhcCCCCccccCC
Q 010734 329 DSKAEL----NAVRNAAMA-AGAFDAVVCSHHAHGGK--GAVDLGIAVQRACENVTQPLKFLYP 385 (502)
Q Consensus 329 DT~~Ei----~~v~~~c~~-~Gv~~~~vs~~wakGGe--Ga~eLA~~Vv~a~e~~~~~fk~LY~ 385 (502)
++++.+ +.+++.|++ .|+. +++-+++..+.. ...+-+..+++.+.. +.++.+.||
T Consensus 117 ~~~~~~~~~~~~l~~l~~~~~gv~-l~lEn~~~~~~~~~~~~~~~~~l~~~~~~-~~~vg~~~D 178 (287)
T 2x7v_A 117 GEEEGIDRIVRGLNEVLNNTEGVV-ILLENVSQKGGNIGYKLEQLKKIRDLVDQ-RDRVAITYD 178 (287)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCSCE-EEEECCCCCTTEECSSHHHHHHHHHHCSC-GGGEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHcccCCCE-EEEeCCCCCCCccCCCHHHHHHHHHhcCC-CCCeEEEEE
Confidence 334333 345555554 6884 888888654431 134445566666542 134666665
No 73
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=66.16 E-value=13 Score=30.80 Aligned_cols=57 Identities=21% Similarity=0.094 Sum_probs=38.5
Q ss_pred hcCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 314 AYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 314 ~fGvPvVVAINrF~tDT~~E--i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
.-++|++++.|+..-..+.+ .+...+++++.+.. +..+. ++=|+|-.+|-+.+.+.+
T Consensus 109 ~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 109 PPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAI-FVETS--AKNAININELFIEISRRI 167 (170)
T ss_dssp CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECB--TTTTBSHHHHHHHHHHHC
T ss_pred CCCCcEEEEEECCccccccccCHHHHHHHHHHcCCE-EEEEe--CCCCcCHHHHHHHHHHHH
Confidence 35789999999975433222 34566778888874 44333 556788888888877665
No 74
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=65.89 E-value=22 Score=31.11 Aligned_cols=65 Identities=18% Similarity=0.219 Sum_probs=40.2
Q ss_pred HHHHHHhhc--CCcEEEEecCCCCCCHHH--------------HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHH
Q 010734 307 RHIANTKAY--GANVVVAVNMFATDSKAE--------------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQ 370 (502)
Q Consensus 307 kHIeNi~~f--GvPvVVAINrF~tDT~~E--------------i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv 370 (502)
+.++.++++ ++|++|++|+-.-..+.+ .+...+++++.|...+..+. ++=|+|-.+|-+.+.
T Consensus 118 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S--A~~g~gi~~l~~~i~ 195 (201)
T 2gco_A 118 KWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS--AKTKEGVREVFEMAT 195 (201)
T ss_dssp THHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC--TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee--CCCCCCHHHHHHHHH
Confidence 334445554 899999999965432211 12455677777773343333 456788888887777
Q ss_pred HHh
Q 010734 371 RAC 373 (502)
Q Consensus 371 ~a~ 373 (502)
+.+
T Consensus 196 ~~~ 198 (201)
T 2gco_A 196 RAG 198 (201)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 75
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=65.82 E-value=9.7 Score=32.31 Aligned_cols=60 Identities=13% Similarity=0.007 Sum_probs=40.4
Q ss_pred hhcCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 313 KAYGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 313 ~~fGvPvVVAINrF~tDT~--~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
...++|+|+++|+-.-..+ -..+.+++++++.|+. +..+ =++=|+|-.+|-+.+++.+..
T Consensus 108 ~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 108 GKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAA-FLES--SAKENQTAVDVFRRIILEAEK 169 (181)
T ss_dssp ----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEEC--CTTSHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCc-EEEE--ecCCCCCHHHHHHHHHHHHHH
Confidence 3468999999999754222 2235567788888884 4433 356789999999998888764
No 76
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=65.77 E-value=8.1 Score=33.74 Aligned_cols=63 Identities=13% Similarity=0.052 Sum_probs=40.9
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHHH--HHHHHHHHHHc-CCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 309 IANTKAYGANVVVAVNMFATDSKAE--LNAVRNAAMAA-GAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 309 IeNi~~fGvPvVVAINrF~tDT~~E--i~~v~~~c~~~-Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
++.....++|++|++|+-.-..+.+ .+.+++++++. +.. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 124 i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~-~~~~S--A~~g~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 124 IDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMR-FCEAS--AKDNFNVDEIFLKLVDDIL 189 (192)
T ss_dssp HHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCE-EEECB--TTTTBSHHHHHHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCe-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 3334445899999999975432222 23456777764 553 44333 6778999998888877664
No 77
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=65.68 E-value=11 Score=33.08 Aligned_cols=67 Identities=7% Similarity=0.096 Sum_probs=44.0
Q ss_pred HHHHHHhhc--CCcEEEEecCCCCCCHH----------HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 307 RHIANTKAY--GANVVVAVNMFATDSKA----------ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 307 kHIeNi~~f--GvPvVVAINrF~tDT~~----------Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
..++.++.+ ++|+||++|+..-..+. ..+.+.+++++.|...+..+. ++=|+|-.+|-+.+++.+.
T Consensus 102 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S--a~~g~gi~~l~~~l~~~~~ 179 (212)
T 2j0v_A 102 KWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECS--SKTQQNVKAVFDTAIKVVL 179 (212)
T ss_dssp THHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECC--TTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEcc--CCCCCCHHHHHHHHHHHHh
Confidence 344555554 89999999996432211 134556777888863344333 4668999999988888876
Q ss_pred c
Q 010734 375 N 375 (502)
Q Consensus 375 ~ 375 (502)
+
T Consensus 180 ~ 180 (212)
T 2j0v_A 180 Q 180 (212)
T ss_dssp C
T ss_pred h
Confidence 4
No 78
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=65.36 E-value=8.8 Score=32.21 Aligned_cols=60 Identities=13% Similarity=-0.043 Sum_probs=41.1
Q ss_pred hhcCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 313 KAYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 313 ~~fGvPvVVAINrF~tDT~~E--i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
...++|+++++|+..-..+.+ .+...+++++.++. +..+. ++-|+|-.+|-+.+++.+.+
T Consensus 111 ~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 111 DRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVA-YFEAS--AKLRLNVDEAFEQLVRAVRK 172 (181)
T ss_dssp TSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECB--TTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCe-EEEec--CCCCCCHHHHHHHHHHHHHH
Confidence 346899999999965432222 24456777888874 44333 56689999988888887754
No 79
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=65.24 E-value=18 Score=34.42 Aligned_cols=56 Identities=23% Similarity=0.297 Sum_probs=46.7
Q ss_pred HHHHHHHHhhcCCcEE-EEec---CCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccc
Q 010734 305 LARHIANTKAYGANVV-VAVN---MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKG 361 (502)
Q Consensus 305 L~kHIeNi~~fGvPvV-VAIN---rF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeG 361 (502)
.++.++.|+..|.++| +.++ .|..+.-+.++.+.++|.+.|.. +.+.-|...|+.+
T Consensus 33 ~~~~~~~i~~~G~N~VRi~~~~~~~~~~~~~~~ld~~v~~a~~~Gi~-Vild~H~~~~~~~ 92 (294)
T 2whl_A 33 ASTAIPAIAEQGANTIRIVLSDGGQWEKDDIDTIREVIELAEQNKMV-AVVEVHDATGRDS 92 (294)
T ss_dssp HHHHHHHHHHTTCSEEEEEECCSSSSCCCCHHHHHHHHHHHHTTTCE-EEEEECTTTTCCC
T ss_pred hHHHHHHHHHcCCCEEEEEecCCCccCccHHHHHHHHHHHHHHCCCE-EEEEeccCCCCCc
Confidence 3567889999999999 7776 68888899999999999999995 8887777766654
No 80
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=65.14 E-value=11 Score=32.58 Aligned_cols=58 Identities=14% Similarity=-0.063 Sum_probs=40.7
Q ss_pred cCCcEEEEecCCCCCC--HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 315 YGANVVVAVNMFATDS--KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 315 fGvPvVVAINrF~tDT--~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
-++|+|+++|+-.-.. ....+..++++++.|+. +..+. ++-|+|-.+|-+.+++.+.+
T Consensus 127 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 127 DNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFD-FFEAS--AKENISVRQAFERLVDAICD 186 (191)
T ss_dssp TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECB--TTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCe-EEEEE--CCCCCCHHHHHHHHHHHHHH
Confidence 5899999999975322 12234566778888884 44333 67789999998888887653
No 81
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Probab=65.10 E-value=33 Score=31.55 Aligned_cols=94 Identities=11% Similarity=0.037 Sum_probs=59.2
Q ss_pred ccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEe-cCCCC--CCHHHHH----HHHHHHHH-cCCCeEEEcCccccCcc--
Q 010734 291 LNENVALVEAGCVNLARHIANTKAYGANVVVAV-NMFAT--DSKAELN----AVRNAAMA-AGAFDAVVCSHHAHGGK-- 360 (502)
Q Consensus 291 ~~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAI-NrF~t--DT~~Ei~----~v~~~c~~-~Gv~~~~vs~~wakGGe-- 360 (502)
..++.+..++.+..++++|+-.+.+|.+.||.- ..... +.++.++ .+++.+.+ .|+. +++-+++..+..
T Consensus 77 ~~~~~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~a~~~gv~-l~lEn~~~~~~~~~ 155 (285)
T 1qtw_A 77 GHPVTEALEKSRDAFIDEMQRCEQLGLSLLNFHPGSHLMQISEEDCLARIAESINIALDKTQGVT-AVIENTAGQGSNLG 155 (285)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHTTCCEEEECCCBCTTTSCHHHHHHHHHHHHHHHHHHCSSCE-EEEECCCCCTTBCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHhccCCCE-EEEecCCCCCCccc
Confidence 346667788899999999999999999999763 33332 3344443 34444444 6884 888888654432
Q ss_pred chhHHHHHHHHHhhcCCCCccccCCC
Q 010734 361 GAVDLGIAVQRACENVTQPLKFLYPL 386 (502)
Q Consensus 361 Ga~eLA~~Vv~a~e~~~~~fk~LY~~ 386 (502)
...+-+..+++.+. +..++.+.+|.
T Consensus 156 ~~~~~~~~l~~~v~-~~~~~g~~~D~ 180 (285)
T 1qtw_A 156 FKFEHLAAIIDGVE-DKSRVGVCIDT 180 (285)
T ss_dssp SSHHHHHHHHHHCS-CGGGEEEEEEH
T ss_pred CCHHHHHHHHHhhc-CccceEEEEEh
Confidence 13344556666652 12347777763
No 82
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=64.26 E-value=10 Score=31.40 Aligned_cols=68 Identities=6% Similarity=-0.119 Sum_probs=43.1
Q ss_pred hHHHHHHHHhh--cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 304 NLARHIANTKA--YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 304 NL~kHIeNi~~--fGvPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
++...++.++. .++|+++++|+..-..+. ..+.+++++++.|+. +..+. ++=|+|-.+|-+.+.+.+-
T Consensus 95 ~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 95 AISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLR-FYRTS--VKEDLNVSEVFKYLAEKHL 166 (168)
T ss_dssp THHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEECB--TTTTBSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCe-EEEEe--cCCCCCHHHHHHHHHHHHh
Confidence 34444444443 489999999996532211 134556788888884 44333 4568888888888777653
No 83
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=64.23 E-value=12 Score=32.40 Aligned_cols=69 Identities=13% Similarity=-0.038 Sum_probs=44.6
Q ss_pred hhHHHHHHHHhh---cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 303 VNLARHIANTKA---YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 303 ~NL~kHIeNi~~---fGvPvVVAINrF~tDT~--~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
.++.+.++.++. .++|++|++|+..-..+ ...+.+++++++.|+. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 114 ~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i~ 187 (193)
T 2oil_A 114 AVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLL-FLETS--ALDSTNVELAFETVLKEIF 187 (193)
T ss_dssp HTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEEC--TTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 344444555544 48999999999753221 1234567788888884 44433 4668888888888777654
No 84
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=63.91 E-value=15 Score=35.64 Aligned_cols=61 Identities=18% Similarity=0.115 Sum_probs=41.8
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCCCHHH---HHHHHHHHHHcCCCeEEEcCccccCccchhHHHH
Q 010734 304 NLARHIANTKAYGANVVVAVNMFATDSKAE---LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGI 367 (502)
Q Consensus 304 NL~kHIeNi~~fGvPvVVAINrF~tDT~~E---i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~ 367 (502)
++.+-+..++..++|+|+++|+-.-.++++ ++.+.+++++.|.. +... =++=|+|-.+|-+
T Consensus 98 ~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~-~~~~--SA~~g~gi~~L~~ 161 (302)
T 2yv5_A 98 LLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYD-VLKV--SAKTGEGIDELVD 161 (302)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCE-EEEC--CTTTCTTHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCe-EEEE--ECCCCCCHHHHHh
Confidence 455566666679999999999976545542 66677788888884 4333 3566777666543
No 85
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=63.68 E-value=19 Score=33.72 Aligned_cols=87 Identities=20% Similarity=0.284 Sum_probs=53.5
Q ss_pred HhhcC-CcEEEEecCCCCCCHHHHH-HHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCC--CccccCCCC
Q 010734 312 TKAYG-ANVVVAVNMFATDSKAELN-AVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQ--PLKFLYPLD 387 (502)
Q Consensus 312 i~~fG-vPvVVAINrF~tDT~~Ei~-~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~--~fk~LY~~~ 387 (502)
+...+ +|+|+++|+..-....++. .+.++++..|+. ++.+ =+.-|+|-.+|-+.+.+.+..... .+..-| .
T Consensus 104 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~-~~~~--Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~--~ 178 (271)
T 3k53_A 104 LFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVP-VIPT--NAKKGEGVEELKRMIALMAEGKVTTNPIIPRY--D 178 (271)
T ss_dssp HHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSC-EEEC--BGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCC--C
T ss_pred HHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHcCCc-EEEE--EeCCCCCHHHHHHHHHHHHhccccCCCCCcCC--C
Confidence 44566 9999999997421111110 145566778885 5433 356689999999999998865322 222333 2
Q ss_pred CCHHHHHHHHHH-HhCC
Q 010734 388 VSIKEKIDTIAR-SYGA 403 (502)
Q Consensus 388 ~sI~eKIe~IA~-IYGA 403 (502)
..+++-++.|.. +-+.
T Consensus 179 ~~~e~~~~~l~~~~~~~ 195 (271)
T 3k53_A 179 EDIEREIKHISELLRGT 195 (271)
T ss_dssp HHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 357777777777 6443
No 86
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=63.52 E-value=12 Score=37.68 Aligned_cols=70 Identities=11% Similarity=0.174 Sum_probs=44.0
Q ss_pred hHHHHHHHHhhcCCcE-EEEec-CCCCCCHHHHHH----HHHHHHHcCC--CeEEE--cCccc-cCccchhHHHHHHHHH
Q 010734 304 NLARHIANTKAYGANV-VVAVN-MFATDSKAELNA----VRNAAMAAGA--FDAVV--CSHHA-HGGKGAVDLGIAVQRA 372 (502)
Q Consensus 304 NL~kHIeNi~~fGvPv-VVAIN-rF~tDT~~Ei~~----v~~~c~~~Gv--~~~~v--s~~wa-kGGeGa~eLA~~Vv~a 372 (502)
....|+..++.+|+|. ||++| +-.- +++.++. +++++++.+. ..+.. ...+. .=|+|-.+|-+.+.+.
T Consensus 99 qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~ 177 (370)
T 2elf_A 99 HTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEV 177 (370)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhh
Confidence 5677888889999999 99999 8776 5554443 4445444432 13443 22221 0078877887777766
Q ss_pred hh
Q 010734 373 CE 374 (502)
Q Consensus 373 ~e 374 (502)
++
T Consensus 178 ~~ 179 (370)
T 2elf_A 178 AE 179 (370)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 87
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=63.36 E-value=8.3 Score=33.97 Aligned_cols=59 Identities=14% Similarity=0.037 Sum_probs=39.3
Q ss_pred hhcCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 313 KAYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 313 ~~fGvPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
...++|++|++|+..-..+. ..+.+.+++++.|+. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 127 ~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--A~~g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 127 ASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELM-FLETS--ALTGENVEEAFLKCARTIL 187 (200)
T ss_dssp TCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEEC--TTTCTTHHHHHHHHHHHHH
T ss_pred cCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 33589999999997543222 224567788888884 44333 4567888887777776654
No 88
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=62.73 E-value=4.8 Score=38.82 Aligned_cols=84 Identities=18% Similarity=0.144 Sum_probs=54.4
Q ss_pred HHHhhcCCcEEEEecCCCCCCHHH--H-HHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCC-CCccccCC
Q 010734 310 ANTKAYGANVVVAVNMFATDSKAE--L-NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVT-QPLKFLYP 385 (502)
Q Consensus 310 eNi~~fGvPvVVAINrF~tDT~~E--i-~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~-~~fk~LY~ 385 (502)
..+..+|+|+|+++|+. |-.++ + ..+.++++..|+. +..+ =++=|+|-.+|-+.+++.+.... ..++.-|
T Consensus 101 ~~l~~~~~p~ilv~NK~--Dl~~~~~~~~~~~~l~~~lg~~-vi~~--SA~~g~gi~el~~~i~~~~~~~~~~~~~~~~- 174 (272)
T 3b1v_A 101 TQLIETGIPVTIALNMI--DVLDGQGKKINVDKLSYHLGVP-VVAT--SALKQTGVDQVVKKAAHTTTSTVGDLAFPIY- 174 (272)
T ss_dssp HHHHHTCSCEEEEEECH--HHHHHTTCCCCHHHHHHHHTSC-EEEC--BTTTTBSHHHHHHHHHHSCTTTCCSCCCCCC-
T ss_pred HHHHhcCCCEEEEEECh--hhCCcCCcHHHHHHHHHHcCCC-EEEE--EccCCCCHHHHHHHHHHHHhhccCCCccCCC-
Confidence 34455899999999984 21111 0 1245667778985 4433 35678999999999988775322 1233345
Q ss_pred CCCCHHHHHHHHHH-H
Q 010734 386 LDVSIKEKIDTIAR-S 400 (502)
Q Consensus 386 ~~~sI~eKIe~IA~-I 400 (502)
...+++-|+.|.. +
T Consensus 175 -~~~~e~~i~~~~~~~ 189 (272)
T 3b1v_A 175 -DDRLEAAISQILEVL 189 (272)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHH
Confidence 3467888888877 5
No 89
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=62.51 E-value=22 Score=35.56 Aligned_cols=69 Identities=19% Similarity=0.085 Sum_probs=44.7
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCCC
Q 010734 315 YGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDV 388 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~~ 388 (502)
.+.|++|++|+-.-..++| .+.+++++.+.. ..+-..=++=|+|-.+|-+.+.+.+.+. .-.++|+.++
T Consensus 273 ~~~p~ilV~NK~Dl~~~~e--~~~~l~~~l~~~-~~v~~iSA~tg~gi~eL~~~l~~~l~~~--~~~~~y~~e~ 341 (342)
T 1lnz_A 273 TERPQIIVANKMDMPEAAE--NLEAFKEKLTDD-YPVFPISAVTREGLRELLFEVANQLENT--PEFPLYDEEE 341 (342)
T ss_dssp TTSCBCBEEECTTSTTHHH--HHHHHHHHCCSC-CCBCCCSSCCSSTTHHHHHHHHHHHTSC--CCCCSSCSCC
T ss_pred cCCCEEEEEECccCCCCHH--HHHHHHHHhhcC-CCEEEEECCCCcCHHHHHHHHHHHHhhC--ccccCCCccc
Confidence 3799999999976544432 345555555521 1122333566899999999999998753 2346887664
No 90
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=62.08 E-value=2.9 Score=39.97 Aligned_cols=85 Identities=19% Similarity=0.274 Sum_probs=51.9
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHHHHH-HHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCC
Q 010734 309 IANTKAYGANVVVAVNMFATDSKAELN-AVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLD 387 (502)
Q Consensus 309 IeNi~~fGvPvVVAINrF~tDT~~Ei~-~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~ 387 (502)
+..++.+++|+|+++|+..--...++. .+.++++..|+. +..+ =++-|+|-.+|-+.+.+.+... ......| .
T Consensus 105 ~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~-~i~~--SA~~g~gi~el~~~i~~~~~~~-~~~~~~~--~ 178 (274)
T 3i8s_A 105 TLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCP-VIPL--VSTRGRGIEALKLAIDRYKANE-NVELVHY--A 178 (274)
T ss_dssp HHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHHTSC-EEEC--CCGGGHHHHHHHHHHHTCCCCC-CCCCCCC--C
T ss_pred HHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhcCCC-EEEE--EcCCCCCHHHHHHHHHHHHhcC-CCcccCC--C
Confidence 344555699999999995321111111 245667778885 4433 3677899999988888776542 1122234 3
Q ss_pred CCHHHHHHHHHH
Q 010734 388 VSIKEKIDTIAR 399 (502)
Q Consensus 388 ~sI~eKIe~IA~ 399 (502)
..+++.+..|..
T Consensus 179 ~~l~~~~~~i~~ 190 (274)
T 3i8s_A 179 QPLLNEADSLAK 190 (274)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 457777777766
No 91
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=61.92 E-value=34 Score=28.59 Aligned_cols=58 Identities=9% Similarity=-0.087 Sum_probs=38.6
Q ss_pred hcCCcEEEEecCCCCC-CHHHHHHHHHHHHH-cCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 314 AYGANVVVAVNMFATD-SKAELNAVRNAAMA-AGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 314 ~fGvPvVVAINrF~tD-T~~Ei~~v~~~c~~-~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
..++|+++++|+..-. .+...+.+.+++++ .+.. +..+. ++-|+|-.+|-+.+++.+-
T Consensus 114 ~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 114 PESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYP-YFETS--AKDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp TTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCC-EEECC--TTTCTTHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEECCcccccccCHHHHHHHHHhcCCce-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 3789999999997542 12223455677773 4554 54443 4568999898888887764
No 92
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=61.86 E-value=17 Score=31.17 Aligned_cols=58 Identities=9% Similarity=-0.067 Sum_probs=36.5
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHH-----HcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 315 YGANVVVAVNMFATDSKAELNAVRNAAM-----AAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~Ei~~v~~~c~-----~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
.+.|+|+++|+-.-..+.+.+.+.+... +.++ .+-+.=++-|+|-.+|-+.+++.+..
T Consensus 116 ~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~---~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 116 RKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQW---HIQACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp TTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCE---EEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred CCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCc---EEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 5899999999965433212223333332 2333 22334467789999999999988864
No 93
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=61.83 E-value=11 Score=31.61 Aligned_cols=57 Identities=12% Similarity=-0.045 Sum_probs=37.7
Q ss_pred CCc-EEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 316 GAN-VVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 316 GvP-vVVAINrF~tDT~~E--i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
+.| +|++.|+..-..+.+ .+.+.+++++.|+. +..+. ++=|+|-.+|-+.+++.+.+
T Consensus 114 ~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 114 TQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFS-SHFVS--AKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp CCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEEEC--TTTCTTHHHHHHHHHHHHTT
T ss_pred CCCeEEEEEEccccccccccCHHHHHHHHHHcCCc-EEEEe--CCCCCCHHHHHHHHHHHHHh
Confidence 677 689999865422111 24556778888884 44433 45689998988888877643
No 94
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=61.76 E-value=11 Score=36.92 Aligned_cols=130 Identities=15% Similarity=0.231 Sum_probs=82.3
Q ss_pred hcccccHHHHHHHHhhHHHHHHHHhhcC--CcEEE--EecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhH
Q 010734 289 AYLNENVALVEAGCVNLARHIANTKAYG--ANVVV--AVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVD 364 (502)
Q Consensus 289 ~l~~eNl~AL~~G~~NL~kHIeNi~~fG--vPvVV--AINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~e 364 (502)
.+.+.+..||+.|+ ++.+-.+-++++- +|+|+ -.|-+-. -=++...+.|++.|+..+.+-+.=- |
T Consensus 60 vIq~a~~rAL~~g~-~~~~~~~~~~~~r~~~Pivlm~Y~N~i~~---~G~e~F~~~~~~aGvdG~IipDLP~-------e 128 (252)
T 3tha_A 60 IIADAAKIALDQGV-DIHSVFELLARIKTKKALVFMVYYNLIFS---YGLEKFVKKAKSLGICALIVPELSF-------E 128 (252)
T ss_dssp HHHHHHHHHHHTTC-CHHHHHHHHHHCCCSSEEEEECCHHHHHH---HCHHHHHHHHHHTTEEEEECTTCCG-------G
T ss_pred HHHHHHHHHHHCCC-CHHHHHHHHHHHhcCCCEEEEeccCHHHH---hhHHHHHHHHHHcCCCEEEeCCCCH-------H
Confidence 45667889999997 7888777777753 67776 5562211 1245677889999998776666422 2
Q ss_pred HHHHHHHHhhcCCCCccccCCCCCCHHHHHHHHHH-H----h-----CCCcee--eCHHHHHHHHHHHHCCCCCCCeeEe
Q 010734 365 LGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-S----Y-----GASGVE--YSEEAEKQIEMYTGQGFSGLPICMA 432 (502)
Q Consensus 365 LA~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~-I----Y-----GA~~V~--fS~~A~kqLk~ie~~Gf~~LPVCmA 432 (502)
=++.+.+.+++..-.+-+|-..+.| .+.|+.|++ . | |-.+.. +++...+-++++.+. .++|||+.
T Consensus 129 E~~~~~~~~~~~Gl~~I~lvaP~t~-~eRi~~ia~~a~gFiY~Vs~~GvTG~~~~~~~~~~~~v~~vr~~--~~~Pv~vG 205 (252)
T 3tha_A 129 ESDDLIKECERYNIALITLVSVTTP-KERVKKLVKHAKGFIYLLASIGITGTKSVEEAILQDKVKEIRSF--TNLPIFVG 205 (252)
T ss_dssp GCHHHHHHHHHTTCEECEEEETTSC-HHHHHHHHTTCCSCEEEECCSCSSSCSHHHHHHHHHHHHHHHTT--CCSCEEEE
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHhCCCeEEEEecCCCCCcccCCCHHHHHHHHHHHHh--cCCcEEEE
Confidence 2556666665422224455555544 588888886 3 3 323332 445567778888876 47899983
No 95
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=61.57 E-value=46 Score=30.29 Aligned_cols=89 Identities=16% Similarity=0.089 Sum_probs=58.9
Q ss_pred cccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEe-cCCCCCC----HHH-------HHHHHHHHHHcCCCeEEEcCcccc
Q 010734 290 YLNENVALVEAGCVNLARHIANTKAYGANVVVAV-NMFATDS----KAE-------LNAVRNAAMAAGAFDAVVCSHHAH 357 (502)
Q Consensus 290 l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAI-NrF~tDT----~~E-------i~~v~~~c~~~Gv~~~~vs~~wak 357 (502)
+..+|.+..++....++++|+-.+.+|.+.||.- ...+.+. ++. +..+.+.+++.|+. +++-++...
T Consensus 63 l~~~~~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lEn~~~~ 141 (254)
T 3ayv_A 63 LLSPDPEVRGLTLRRLLFGLDRAAELGADRAVFHSGIPHGRTPEEALERALPLAEALGLVVRRARTLGVR-LLLENSHEP 141 (254)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCCTTCCHHHHHHTHHHHHHHTHHHHHHHHHHTCE-EEEECSSCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCCCcccccccHHHHHHHHHHHHHHHHHHHhhcCCE-EEEcCCCCC
Confidence 3456777888999999999999999999998764 3333332 222 34455667778995 777777532
Q ss_pred CccchhHHHHHHHHHhhcCCCCccccCCC
Q 010734 358 GGKGAVDLGIAVQRACENVTQPLKFLYPL 386 (502)
Q Consensus 358 GGeGa~eLA~~Vv~a~e~~~~~fk~LY~~ 386 (502)
..+-+..+++.+. .++.+.||.
T Consensus 142 ----~~~~~~~l~~~v~---~~vg~~~D~ 163 (254)
T 3ayv_A 142 ----HPEALRPVLEAHA---GELGFCFDA 163 (254)
T ss_dssp ----SGGGTHHHHHHHT---TSSEEEEEH
T ss_pred ----CHHHHHHHHHhcC---cCEEEEEEc
Confidence 3333445555553 357888874
No 96
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=61.46 E-value=17 Score=30.45 Aligned_cols=67 Identities=9% Similarity=0.005 Sum_probs=43.2
Q ss_pred HHHHHHHHhhc--CCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 305 LARHIANTKAY--GANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 305 L~kHIeNi~~f--GvPvVVAINrF~tDT~--~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
+.+.++.+++. ++|+||++|+..-..+ .+.+...+++...|+. +..+ =++=|+|-.+|-+.+.+.+.
T Consensus 100 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 100 VKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQ-LFET--SAKENVNVEEMFNCITELVL 170 (181)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC-EEEC--BTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCe-EEEE--ECCCCCCHHHHHHHHHHHHH
Confidence 33334444432 6999999999653221 1234567788888885 4433 35668898888888877765
No 97
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=61.45 E-value=22 Score=31.32 Aligned_cols=71 Identities=11% Similarity=0.030 Sum_probs=46.1
Q ss_pred hhHHHHHHHHhh---cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 303 VNLARHIANTKA---YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 303 ~NL~kHIeNi~~---fGvPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
.++.+.++.+++ .++|+||++|+-.-..+. ..+.+++++++.|+..+..+. ++=|+|-.+|-+.+++.+.+
T Consensus 118 ~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~S--A~~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 118 LSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETS--AKDSSNVEEAFLRVATELIM 193 (201)
T ss_dssp HTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECB--TTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEe--CCCCCCHHHHHHHHHHHHHH
Confidence 344444444443 579999999996543211 234567888888883243333 56689999998888887754
No 98
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=61.42 E-value=16 Score=32.20 Aligned_cols=70 Identities=13% Similarity=0.022 Sum_probs=45.8
Q ss_pred hhHHHHHHHHhh----cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 303 VNLARHIANTKA----YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 303 ~NL~kHIeNi~~----fGvPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
.++.+.++.+++ .++|+|++.|+-.-..+. ..+...+++++.|.. +. +.=++=|+|-.+|-+.+++.+.+
T Consensus 113 ~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~-~~--e~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 113 SKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCK-HI--ETSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp HTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EE--EEBTTTTBSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCE-EE--EEcCCCCCCHHHHHHHHHHHHHH
Confidence 344444544543 589999999987542221 234456778888874 43 33467789999998888887754
No 99
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=60.66 E-value=18 Score=31.86 Aligned_cols=64 Identities=11% Similarity=-0.020 Sum_probs=42.7
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 309 IANTKAYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 309 IeNi~~fGvPvVVAINrF~tDT~~E--i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
+......++|+|+++|+-.-....+ .+.+.++++..+.. +.. .=++=|+|-.+|-+.+.+.+.+
T Consensus 110 ~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~--~Sa~~g~gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 110 FQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYE-YFE--ISAKTAHNFGLPFLHLARIFTG 175 (218)
T ss_dssp HHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCE-EEE--EBTTTTBTTTHHHHHHHHHHHC
T ss_pred HHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCc-EEE--EecCCCCCHHHHHHHHHHHHhc
Confidence 3334445899999999976544322 24456777777874 333 3356789999999999888875
No 100
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=60.47 E-value=22 Score=30.96 Aligned_cols=71 Identities=8% Similarity=-0.094 Sum_probs=45.2
Q ss_pred HhhHHHHHHHHhh----cCCcEEEEecCCCC----CCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 302 CVNLARHIANTKA----YGANVVVAVNMFAT----DSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 302 ~~NL~kHIeNi~~----fGvPvVVAINrF~t----DT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
+.++..-++.++. .++|+|++.|+..- +..-..+.+.+++++.|...+. +.=++-|+|-.+|-+.+++.+
T Consensus 101 ~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~--e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 101 FQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYY--ETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp HHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEE--EEBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEE--EecCCCCCCHHHHHHHHHHHH
Confidence 3444444555554 47999999999643 1122234567788888732343 334577899988888887766
Q ss_pred h
Q 010734 374 E 374 (502)
Q Consensus 374 e 374 (502)
.
T Consensus 179 ~ 179 (184)
T 3ihw_A 179 V 179 (184)
T ss_dssp H
T ss_pred H
Confidence 4
No 101
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=60.14 E-value=45 Score=32.56 Aligned_cols=143 Identities=17% Similarity=0.252 Sum_probs=83.1
Q ss_pred CCCCCccCCCCCc------hhcccccHHHHHHHH--hhHHHHHHHHhh--cCCcEEEE--ecC-CCCCCHHHHHHHHHHH
Q 010734 275 GGGPQVVAGKPLD------HAYLNENVALVEAGC--VNLARHIANTKA--YGANVVVA--VNM-FATDSKAELNAVRNAA 341 (502)
Q Consensus 275 GG~~~~~~~~pl~------~~l~~eNl~AL~~G~--~NL~kHIeNi~~--fGvPvVVA--INr-F~tDT~~Ei~~v~~~c 341 (502)
+|+.-..+|-|.. ....+-+..||+.|+ .++...++.+|+ ..+|+|+- .|- |... ++...+.|
T Consensus 44 ~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g----~e~f~~~~ 119 (267)
T 3vnd_A 44 NGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANG----IDEFYTKA 119 (267)
T ss_dssp TTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHC----HHHHHHHH
T ss_pred cCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhh----HHHHHHHH
Confidence 5665555553331 134455678899994 444666777776 47897664 242 2222 24556778
Q ss_pred HHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCCCCHHHHHHHHHH-----HhCC-----Ccee--eC
Q 010734 342 MAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-----SYGA-----SGVE--YS 409 (502)
Q Consensus 342 ~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~-----IYGA-----~~V~--fS 409 (502)
++.|+..+.+.+.=- |=++.+.+.+.+..-..-++-.+..|. +.|+.|++ ||-. .+.. ++
T Consensus 120 ~~aGvdgvii~Dlp~-------ee~~~~~~~~~~~gl~~i~liaP~t~~-eri~~i~~~~~gfvY~vS~~GvTG~~~~~~ 191 (267)
T 3vnd_A 120 QAAGVDSVLIADVPV-------EESAPFSKAAKAHGIAPIFIAPPNADA-DTLKMVSEQGEGYTYLLSRAGVTGTESKAG 191 (267)
T ss_dssp HHHTCCEEEETTSCG-------GGCHHHHHHHHHTTCEEECEECTTCCH-HHHHHHHHHCCSCEEESCCCCCC-------
T ss_pred HHcCCCEEEeCCCCH-------hhHHHHHHHHHHcCCeEEEEECCCCCH-HHHHHHHHhCCCcEEEEecCCCCCCccCCc
Confidence 889997656654322 225566677765322344555666664 57888875 4542 2222 56
Q ss_pred HHHHHHHHHHHHCCCCCCCeeE
Q 010734 410 EEAEKQIEMYTGQGFSGLPICM 431 (502)
Q Consensus 410 ~~A~kqLk~ie~~Gf~~LPVCm 431 (502)
+...+.++++.+. .++|||+
T Consensus 192 ~~~~~~v~~vr~~--~~~pv~v 211 (267)
T 3vnd_A 192 EPIENILTQLAEF--NAPPPLL 211 (267)
T ss_dssp -CHHHHHHHHHTT--TCCCEEE
T ss_pred HHHHHHHHHHHHh--cCCCEEE
Confidence 6677888888886 3789998
No 102
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=59.85 E-value=7.7 Score=32.17 Aligned_cols=58 Identities=9% Similarity=-0.056 Sum_probs=38.5
Q ss_pred cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 315 YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~E--i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
-++|+++++|+-.-..+.+ .+...++++..++. +.. .=++-|+|-.+|-+.+++.++.
T Consensus 108 ~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~--~Sa~~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 108 ESIPIMLVGNKCDESPSREVQSSEAEALARTWKCA-FME--TSAKLNHNVKELFQELLNLEKR 167 (172)
T ss_dssp -CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEE--CBTTTTBSHHHHHHHHHHTCCS
T ss_pred CCCCEEEEEEccccccccccCHHHHHHHHHHhCCe-EEE--ecCCCCcCHHHHHHHHHHHHhh
Confidence 3799999999965322222 23455677777874 433 3356789999999988887653
No 103
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=59.84 E-value=10 Score=33.01 Aligned_cols=57 Identities=14% Similarity=0.127 Sum_probs=37.7
Q ss_pred cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcCccccCcc-chhHHHHHHHHHhh
Q 010734 315 YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGK-GAVDLGIAVQRACE 374 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~--~Ei~~v~~~c~~~Gv~~~~vs~~wakGGe-Ga~eLA~~Vv~a~e 374 (502)
.++|+|++.|+..-..+ ...+.+.+++++.++. +..+. ++=|+ |-.+|-+.+++.+.
T Consensus 131 ~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~g~~gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 131 KNVTLILVGNKADLDHSRQVSTEEGEKLATELACA-FYECS--ACTGEGNITEIFYELCREVR 190 (196)
T ss_dssp SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSE-EEECC--TTTCTTCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECcccccccccCHHHHHHHHHHhCCe-EEEEC--CCcCCcCHHHHHHHHHHHHH
Confidence 68999999999654321 1234556777778874 44443 45577 77788777777664
No 104
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=59.72 E-value=24 Score=30.37 Aligned_cols=57 Identities=12% Similarity=0.046 Sum_probs=35.6
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHH--H---cCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 315 YGANVVVAVNMFATDSKAELNAVRNAAM--A---AGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~Ei~~v~~~c~--~---~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
.++|+|+++|+-.-..+.+.+.+.+++. . .++ -+-+.=++=|+|-.+|-+.+.+.++
T Consensus 125 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 125 RRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPW---HICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp SCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCE---EEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred CCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCce---EEEEccCCCCcCHHHHHHHHHHHHH
Confidence 5899999999975433323344445443 1 233 2333446778998888888877764
No 105
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=59.60 E-value=23 Score=29.84 Aligned_cols=59 Identities=17% Similarity=0.111 Sum_probs=40.3
Q ss_pred hcCCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 314 AYGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 314 ~fGvPvVVAINrF~tDT-~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
..++|+||++|+..-.. ....+.+.+++++.|+. +..+. ++-|+|-.+|-+.+++.+.+
T Consensus 107 ~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 107 SEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIP-FIETS--AKTRQGVDDAFYTLVREIRK 166 (189)
T ss_dssp CSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCC-EEECC--TTTCTTHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEECccCcccccCHHHHHHHHHHcCCe-EEEEe--CCCCCCHHHHHHHHHHHHHH
Confidence 36899999999975421 12234556777788885 44333 46688988888888877753
No 106
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=59.28 E-value=16 Score=31.97 Aligned_cols=62 Identities=18% Similarity=0.147 Sum_probs=38.6
Q ss_pred HHHhhcCCcEEEEecCCCCCCHH--------HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 310 ANTKAYGANVVVAVNMFATDSKA--------ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 310 eNi~~fGvPvVVAINrF~tDT~~--------Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
+.....++|+||++|+..-..+. ..+...+++++.|+. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 127 ~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~S--A~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 127 EDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGAL-FCETS--AKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp HHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCE-EEECC--TTTCTTHHHHHHHHHHHHT
T ss_pred HHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCe-EEEee--CCCCCCHHHHHHHHHHHHH
Confidence 33334589999999996432111 123456778888884 44333 4668898888888887764
No 107
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=59.04 E-value=16 Score=31.59 Aligned_cols=73 Identities=11% Similarity=0.031 Sum_probs=45.0
Q ss_pred hhHHHHHHHHhh--cCCcEEEEecCCCCCCHHHHH-----HHHHHHHHcCCCeE-EEcCccccCc-cchhHHHHHHHHHh
Q 010734 303 VNLARHIANTKA--YGANVVVAVNMFATDSKAELN-----AVRNAAMAAGAFDA-VVCSHHAHGG-KGAVDLGIAVQRAC 373 (502)
Q Consensus 303 ~NL~kHIeNi~~--fGvPvVVAINrF~tDT~~Ei~-----~v~~~c~~~Gv~~~-~vs~~wakGG-eGa~eLA~~Vv~a~ 373 (502)
.++...++.++. .+.|+|++.|+..-..+.++. ...+++++.|.... ...+.=++-| +|-.+|.+.+.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 97 DAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINES 176 (184)
T ss_dssp HTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHH
Confidence 355555555544 379999999998665555542 23455656676410 1122335556 48899999988877
Q ss_pred hc
Q 010734 374 EN 375 (502)
Q Consensus 374 e~ 375 (502)
.+
T Consensus 177 ~~ 178 (184)
T 2zej_A 177 LN 178 (184)
T ss_dssp HC
T ss_pred hc
Confidence 53
No 108
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=58.58 E-value=59 Score=30.28 Aligned_cols=104 Identities=11% Similarity=0.087 Sum_probs=64.2
Q ss_pred cccHHHHHHHHhhHHHHHHHHhhcCCcEEEEec--C-CCCCCHHH-------HHHHHHHHHHcCCCeEEEcCccccCccc
Q 010734 292 NENVALVEAGCVNLARHIANTKAYGANVVVAVN--M-FATDSKAE-------LNAVRNAAMAAGAFDAVVCSHHAHGGKG 361 (502)
Q Consensus 292 ~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAIN--r-F~tDT~~E-------i~~v~~~c~~~Gv~~~~vs~~wakGGeG 361 (502)
.++.+..++.+..+++.|+..+.+|.+.||.-- . +..++++. +..+.+.+++.|+. +++-+++..-. .
T Consensus 97 ~~d~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lEn~~~~~~-~ 174 (295)
T 3cqj_A 97 SEDDAVRAQGLEIMRKAIQFAQDVGIRVIQLAGYDVYYQEANNETRRRFRDGLKESVEMASRAQVT-LAMEIMDYPLM-N 174 (295)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHTCCEEEECCCSCSSSCCCHHHHHHHHHHHHHHHHHHHHHTCE-EEEECCSSGGG-C
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCHHHHHHHHHHHHHHHHHHHHHhCCE-EEEeeCCCccc-C
Confidence 345566778889999999999999999998531 1 12234433 45555667788995 77777753211 1
Q ss_pred hhHHHHHHHHHhhcCCCCccccCCC------CCCHHHHHHHHHH
Q 010734 362 AVDLGIAVQRACENVTQPLKFLYPL------DVSIKEKIDTIAR 399 (502)
Q Consensus 362 a~eLA~~Vv~a~e~~~~~fk~LY~~------~~sI~eKIe~IA~ 399 (502)
..+-+..+++.+.. .++...||. ..++.+-|++...
T Consensus 175 ~~~~~~~l~~~v~~--~~vg~~~D~~h~~~~g~d~~~~l~~~~~ 216 (295)
T 3cqj_A 175 SISKALGYAHYLNN--PWFQLYPDIGNLSAWDNDVQMELQAGIG 216 (295)
T ss_dssp SHHHHHHHHHHHCC--TTEEEECBHHHHHSSSCCHHHHHHHTGG
T ss_pred CHHHHHHHHHhcCC--CCeEEEeccchHhhcCCCHHHHHHHhcc
Confidence 23334455665532 346666542 3456666666544
No 109
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=58.18 E-value=10 Score=32.24 Aligned_cols=64 Identities=9% Similarity=0.006 Sum_probs=42.0
Q ss_pred HHHHHhhcCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 308 HIANTKAYGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 308 HIeNi~~fGvPvVVAINrF~tDT~--~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
.+......++|++|++|+..-..+ .+.+...+++++.++. +..+ =++=|+|-.+|-+.+++.+.
T Consensus 107 ~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 107 DARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELM-FLET--SALTGENVEEAFVQCARKIL 172 (186)
T ss_dssp HHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEC--CTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEe--cCCCCCCHHHHHHHHHHHHH
Confidence 344444578999999999754221 2234556788888884 4443 35667888888777776654
No 110
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=57.97 E-value=25 Score=33.96 Aligned_cols=61 Identities=16% Similarity=0.156 Sum_probs=40.9
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcC--CCeEEEcCccccCccchhHHHH
Q 010734 304 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAG--AFDAVVCSHHAHGGKGAVDLGI 367 (502)
Q Consensus 304 NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~G--v~~~~vs~~wakGGeGa~eLA~ 367 (502)
++.+.+..++..++|+|+++|+-.-.++.+++.+.++++..+ .. +..+ =++=|+|-.+|-+
T Consensus 103 ~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~-~~~~--SAktg~gv~~lf~ 165 (301)
T 1u0l_A 103 IIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYP-IVKT--SAKTGMGIEELKE 165 (301)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSC-EEEC--CTTTCTTHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCc-EEEE--ECCCCcCHHHHHH
Confidence 455556666668999999999976656666666777777666 53 3333 3566777665543
No 111
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=57.96 E-value=7 Score=34.87 Aligned_cols=71 Identities=8% Similarity=-0.127 Sum_probs=46.9
Q ss_pred hhHHHHHHHHhhc--CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcC
Q 010734 303 VNLARHIANTKAY--GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENV 376 (502)
Q Consensus 303 ~NL~kHIeNi~~f--GvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~ 376 (502)
.++...++.+.++ ++|+|+++|+-.-......+...+++++.++. +..+. ++=|+|-.+|-+.+.+.+...
T Consensus 104 ~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 104 KNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQ-YYDIS--AKSNYNFEKPFLWLARKLIGD 176 (221)
T ss_dssp HTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCE-EEECB--GGGTBTTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHHHhC
Confidence 3444445555443 89999999997543333333455677888884 44333 577899999988888877643
No 112
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=57.82 E-value=24 Score=33.87 Aligned_cols=56 Identities=11% Similarity=0.055 Sum_probs=39.3
Q ss_pred HHHHhhHHHHHHHHhhcCCcEEEEecCCCC-CCHHHH-------HHHHHHHHHcCCCeEEEcCccc
Q 010734 299 EAGCVNLARHIANTKAYGANVVVAVNMFAT-DSKAEL-------NAVRNAAMAAGAFDAVVCSHHA 356 (502)
Q Consensus 299 ~~G~~NL~kHIeNi~~fGvPvVVAINrF~t-DT~~Ei-------~~v~~~c~~~Gv~~~~vs~~wa 356 (502)
++....+++.|+-.+.+|.+.||. --++. .+++++ ..+.+.|++.|+. +++-+|..
T Consensus 110 ~~~~~~~~~~i~~A~~lG~~~v~~-~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lEn~~~ 173 (305)
T 3obe_A 110 PKFDEFWKKATDIHAELGVSCMVQ-PSLPRIENEDDAKVVSEIFNRAGEITKKAGIL-WGYHNHSN 173 (305)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEE-CCCCCCSSHHHHHHHHHHHHHHHHHHHTTTCE-EEEECCSG
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEe-CCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCE-EEEecCcc
Confidence 345678999999999999999995 33322 355444 4455677788995 77766643
No 113
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=57.47 E-value=13 Score=32.50 Aligned_cols=58 Identities=14% Similarity=0.005 Sum_probs=40.0
Q ss_pred cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 315 YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
.++|+||++|+..-..+. ..+...+++++.|+. +. +.=++=|+|-.+|-+.+++.+.+
T Consensus 128 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~--~~Sa~~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 128 TRVPVVLVGNKADLSPEREVQAVEGKKLAESWGAT-FM--ESSARENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp -CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EE--ECCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECccCccccccCHHHHHHHHHHhCCe-EE--EEeCCCCCCHHHHHHHHHHHHHh
Confidence 489999999997643222 223456778888884 44 33456688998988888887764
No 114
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=57.18 E-value=37 Score=29.02 Aligned_cols=57 Identities=12% Similarity=0.044 Sum_probs=36.0
Q ss_pred CCcEEEEecCCCCCCH---HHHHHHHHH---HHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 316 GANVVVAVNMFATDSK---AELNAVRNA---AMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 316 GvPvVVAINrF~tDT~---~Ei~~v~~~---c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
++|+||++|+-.-..+ +|+...... ++..++. +. +.=++-|+|-.+|-+.+++.+.+
T Consensus 127 ~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 127 RVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFV-IF--ASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp BCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEE-EE--ECBTTTTBTHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeE-EE--EeeCCCccCHHHHHHHHHHHHHH
Confidence 8999999999765443 444332221 1334442 33 34467789999988888887653
No 115
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=56.99 E-value=25 Score=29.52 Aligned_cols=65 Identities=12% Similarity=0.076 Sum_probs=41.2
Q ss_pred HHHHhhc--CCcEEEEecCCCCCCH-HH-------------HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHH
Q 010734 309 IANTKAY--GANVVVAVNMFATDSK-AE-------------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 372 (502)
Q Consensus 309 IeNi~~f--GvPvVVAINrF~tDT~-~E-------------i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a 372 (502)
++.++++ ++|+|+++|+..-..+ .. .+...+++++.|...+..+ =++=|+|-.+|-+.+++.
T Consensus 100 ~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--Sa~~g~gi~~l~~~l~~~ 177 (186)
T 1mh1_A 100 YPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC--SALTQRGLKTVFDEAIRA 177 (186)
T ss_dssp HHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC--CTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEe--cCCCccCHHHHHHHHHHH
Confidence 4444443 8999999999643111 11 2334567777776334333 356688999999888888
Q ss_pred hhc
Q 010734 373 CEN 375 (502)
Q Consensus 373 ~e~ 375 (502)
+-+
T Consensus 178 ~~~ 180 (186)
T 1mh1_A 178 VLC 180 (186)
T ss_dssp HSC
T ss_pred Hhc
Confidence 754
No 116
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=56.93 E-value=15 Score=38.33 Aligned_cols=66 Identities=11% Similarity=0.185 Sum_probs=45.6
Q ss_pred HHHHHHHhhcCCcEEEEecCCCCCCHHHHHH----HHHHHHHc----CCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 306 ARHIANTKAYGANVVVAVNMFATDSKAELNA----VRNAAMAA----GAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 306 ~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~----v~~~c~~~----Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
..|+..++.+|+|.||++|+-.--++++++. +++++++. ++. +..+..+ =|+|-.+|-+.+.+.+.
T Consensus 115 ~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~-ii~vSA~--~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 115 GEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSS-IIPISAK--TGFGVDELKNLIITTLN 188 (482)
T ss_dssp HHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCC-EEECCTT--TCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccce-EEEEECc--CCCCHHHHHHHHHHhhc
Confidence 4566677889999999999987655655544 44455544 343 4444444 47888899888888765
No 117
>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}
Probab=56.87 E-value=11 Score=36.71 Aligned_cols=80 Identities=16% Similarity=0.112 Sum_probs=51.2
Q ss_pred CCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHH
Q 010734 259 PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVR 338 (502)
Q Consensus 259 P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~ 338 (502)
-|.+=+|.-+.+||- |. .++-.+++.++.+-+. ..-++||+--. |- |++|+....
T Consensus 109 AdEIDmViNig~lk~--g~----------~~~v~~eI~~v~~a~~----------~~~lKVIlEt~-~L--t~eei~~a~ 163 (239)
T 3ngj_A 109 AEEVDMVINIGMVKA--KK----------YDDVEKDVKAVVDASG----------KALTKVIIECC-YL--TNEEKVEVC 163 (239)
T ss_dssp CSEEEEECCHHHHHT--TC----------HHHHHHHHHHHHHHHT----------TSEEEEECCGG-GS--CHHHHHHHH
T ss_pred CCEEEEEeehHHhcc--cc----------HHHHHHHHHHHHHHhc----------CCceEEEEecC-CC--CHHHHHHHH
Confidence 567888888888882 21 2233444444444332 11244444333 32 678999999
Q ss_pred HHHHHcCCCeEEEcCccccCccchh
Q 010734 339 NAAMAAGAFDAVVCSHHAHGGKGAV 363 (502)
Q Consensus 339 ~~c~~~Gv~~~~vs~~wakGGeGa~ 363 (502)
+.|.++|+..+-.|+.|..||.=-.
T Consensus 164 ~ia~~aGADfVKTSTGf~~ggAt~~ 188 (239)
T 3ngj_A 164 KRCVAAGAEYVKTSTGFGTHGATPE 188 (239)
T ss_dssp HHHHHHTCSEEECCCSSSSCCCCHH
T ss_pred HHHHHHCcCEEECCCCCCCCCCCHH
Confidence 9999999987777789988876443
No 118
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=56.76 E-value=7.8 Score=38.73 Aligned_cols=114 Identities=11% Similarity=0.099 Sum_probs=74.4
Q ss_pred HHHHHhcCCCCeEEeeccccccccchhccccccccCCCCCCe---EEEEeeehhhhhcCCCCCccCCCCCchhccc----
Q 010734 220 KIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQC---AVIVATIRALKMHGGGPQVVAGKPLDHAYLN---- 292 (502)
Q Consensus 220 k~alkla~~~dyvVTEAGFgaDlGaEKF~dIkcr~~gl~P~a---~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~---- 292 (502)
++.-|..--.||+||-.-|..|. .++|++ +||..|+.--. +--+.+.+.+++-.. ..|-.+|+++.+
T Consensus 168 ~Lk~KvdAGAdf~iTQ~ffD~~~-~~~f~~-~~r~~Gi~vPIi~GImPi~s~~~~~~~~~----~~Gv~iP~~l~~~l~~ 241 (304)
T 3fst_A 168 NLKRKVDAGANRAITQFFFDVES-YLRFRD-RCVSAGIDVEIIPGILPVSNFKQAKKLAD----MTNVRIPAWMAQMFDG 241 (304)
T ss_dssp HHHHHHHHTCCEEEECCCSCHHH-HHHHHH-HHHHTTCCSCEECEECCCSCHHHHHHHHH----HHTCCCCHHHHHHHTT
T ss_pred HHHHHHHcCCCEEEeCccCCHHH-HHHHHH-HHHhcCCCCcEEEEecccCCHHHHHHHHH----cCCCcCCHHHHHHHHh
Confidence 44445422249999999999876 778888 89999986221 122455666664421 123335554433
Q ss_pred --ccHHH-HHHHHhhHHHHHHHHhhcCCcEE--EEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010734 293 --ENVAL-VEAGCVNLARHIANTKAYGANVV--VAVNMFATDSKAELNAVRNAAMAAGAF 347 (502)
Q Consensus 293 --eNl~A-L~~G~~NL~kHIeNi~~fGvPvV--VAINrF~tDT~~Ei~~v~~~c~~~Gv~ 347 (502)
.|.++ .+.|.+--...++.+...|+|-| -++|+. +.+.+.|+.+|..
T Consensus 242 ~~dd~~~~~~~Gi~~a~e~~~~L~~~gv~GiH~yt~n~~--------~~~~~I~~~lg~~ 293 (304)
T 3fst_A 242 LDDDAETRKLVGANIAMDMVKILSREGVKDFHFYTLNRA--------EMSYAICHTLGVR 293 (304)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTCC--------HHHHHHHHHTTCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCH--------HHHHHHHHHhCCC
Confidence 24666 67888888888888888888765 345655 5677778888875
No 119
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=56.71 E-value=33 Score=40.84 Aligned_cols=100 Identities=19% Similarity=0.175 Sum_probs=59.7
Q ss_pred cchhccccccccCCCC-CCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCc-EE
Q 010734 243 GAEKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGAN-VV 320 (502)
Q Consensus 243 GaEKF~dIkcr~~gl~-P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvP-vV 320 (502)
|-|+|. +-+..++. .|++|+|.-..- |.. .....|+..++..|+| +|
T Consensus 368 GHedF~--~~mi~gas~AD~aILVVDAtd-----Gv~------------------------~QTrEhL~ll~~lgIP~II 416 (1289)
T 3avx_A 368 GHADYV--KNMITGAAQMDGAILVVAATD-----GPM------------------------PQTREHILLGRQVGVPYII 416 (1289)
T ss_dssp CHHHHH--HHHHHTSCCCSEEEEEEETTT-----CSC------------------------TTHHHHHHHHHHHTCSCEE
T ss_pred ChHHHH--HHHHHHHhhCCEEEEEEcCCc-----cCc------------------------HHHHHHHHHHHHcCCCeEE
Confidence 456664 44455555 899999987541 211 1334577777788999 79
Q ss_pred EEecCCCCCCHHH-H----HHHHHHHHHcCC----CeEEEcCcccc-Cc-----cchhHHHHHHHHHh
Q 010734 321 VAVNMFATDSKAE-L----NAVRNAAMAAGA----FDAVVCSHHAH-GG-----KGAVDLGIAVQRAC 373 (502)
Q Consensus 321 VAINrF~tDT~~E-i----~~v~~~c~~~Gv----~~~~vs~~wak-GG-----eGa~eLA~~Vv~a~ 373 (502)
|++|+-.-.+++| + +.+++++++.|. ..+..+..+.. -| +|-.+|-+.+.+.+
T Consensus 417 VVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 417 VFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp EEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred EEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 9999976543222 2 345667777773 13555555442 11 45566666666544
No 120
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=56.65 E-value=41 Score=28.04 Aligned_cols=58 Identities=10% Similarity=-0.000 Sum_probs=37.7
Q ss_pred hcCCcEEEEecCCCCCCHH---HHHHHHHHHHH-cCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 314 AYGANVVVAVNMFATDSKA---ELNAVRNAAMA-AGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 314 ~fGvPvVVAINrF~tDT~~---Ei~~v~~~c~~-~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
..++|+++++|+-.-..++ ..+.+.+++++ .+.. +..+. ++-|+|-.+|-+.+.+.+.
T Consensus 116 ~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 116 PETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIP-LFLTS--AKNAINVDTAFEEIARSAL 177 (182)
T ss_dssp TTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCC-EEEEB--TTTTBSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCe-EEEEe--cCCCCCHHHHHHHHHHHHH
Confidence 3789999999997642211 23445666663 4554 43333 5678998888888877654
No 121
>1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium; 2.90A {Enterococcus faecalis} SCOP: c.1.15.6
Probab=56.23 E-value=16 Score=36.06 Aligned_cols=29 Identities=14% Similarity=0.096 Sum_probs=23.6
Q ss_pred HHHHHhhHHHHHHHHhhcCCcEEEEecCCC
Q 010734 298 VEAGCVNLARHIANTKAYGANVVVAVNMFA 327 (502)
Q Consensus 298 L~~G~~NL~kHIeNi~~fGvPvVVAINrF~ 327 (502)
.++.++++++.|++++++|+++|+. |-++
T Consensus 90 r~~~i~~~~~~i~~a~~lG~~~v~~-n~~p 118 (367)
T 1tz9_A 90 RDHYIDNYRQTLRNLGKCGISLVCY-SFKP 118 (367)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEE-CCCS
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEE-eCCC
Confidence 3567889999999999999998765 5443
No 122
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=55.26 E-value=38 Score=31.19 Aligned_cols=132 Identities=16% Similarity=0.182 Sum_probs=75.6
Q ss_pred cccHHHHHHHHhhHHHHHHHHhhcCCcEEEEe-----cC--CC--CCCHHHHH-------HHHHHHHHcCCCeEEEcCcc
Q 010734 292 NENVALVEAGCVNLARHIANTKAYGANVVVAV-----NM--FA--TDSKAELN-------AVRNAAMAAGAFDAVVCSHH 355 (502)
Q Consensus 292 ~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAI-----Nr--F~--tDT~~Ei~-------~v~~~c~~~Gv~~~~vs~~w 355 (502)
.++.+.-++.+..+++.|+..+.+|.+.||.. .+ |. .++++.++ .+.+.+++.|+. +++-++.
T Consensus 77 ~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lEn~~ 155 (290)
T 2qul_A 77 SPDKSVRDAGTEYVKRLLDDCHLLGAPVFAGLTFCAWPQSPPLDMKDKRPYVDRAIESVRRVIKVAEDYGII-YALEVVN 155 (290)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEEESSCCCCTTCCCCHHHHHHHHHHHHTTHHHHHHHTCE-EEEECCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeeccccCCcccCCCcccHHHHHHHHHHHHHHHHHHHHHcCCE-EEEEeCc
Confidence 45556677888999999999999999999842 22 32 24454443 344566778995 7777664
Q ss_pred ccCcc--chhHHHHHHHHHhhcCCCCccccCCC------CCCHHHHHHHHHH-Hh------------CCCceeeCHHHHH
Q 010734 356 AHGGK--GAVDLGIAVQRACENVTQPLKFLYPL------DVSIKEKIDTIAR-SY------------GASGVEYSEEAEK 414 (502)
Q Consensus 356 akGGe--Ga~eLA~~Vv~a~e~~~~~fk~LY~~------~~sI~eKIe~IA~-IY------------GA~~V~fS~~A~k 414 (502)
...+. ...+-+..+++.+. ..++.+.+|. ..++.+=|++... |. |...+. -.+
T Consensus 156 ~~~~~~~~~~~~~~~l~~~~~--~~~~g~~~D~~h~~~~g~d~~~~l~~~~~~i~~vH~~D~~~~~~G~G~id----~~~ 229 (290)
T 2qul_A 156 RFEQWLCNDAKEAIAFADAVD--SPACKVQLDTFHMNIEETSFRDAILACKGKMGHFHLGEANRLPPGEGRLP----WDE 229 (290)
T ss_dssp TTTCSSCCSHHHHHHHHHHHC--CTTEEEEEEHHHHHHHCSCHHHHHHHTTTTEEEEEECCTTSCCTTSSCSC----HHH
T ss_pred cccccccCCHHHHHHHHHHcC--CCCEEEEEEchhhhhcCCCHHHHHHHHHhheeEEEEccCCCCCCCCCCcC----HHH
Confidence 21111 12333445566654 2346666654 3355555555443 22 112222 244
Q ss_pred HHHHHHHCCCCCCCeeE
Q 010734 415 QIEMYTGQGFSGLPICM 431 (502)
Q Consensus 415 qLk~ie~~Gf~~LPVCm 431 (502)
-++.+++.||+. |+++
T Consensus 230 ~~~~L~~~gy~g-~~~l 245 (290)
T 2qul_A 230 IFGALKEIGYDG-TIVM 245 (290)
T ss_dssp HHHHHHHTTCCS-CEEE
T ss_pred HHHHHHHhCCCc-eEEE
Confidence 556677777754 4444
No 123
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=55.17 E-value=16 Score=30.78 Aligned_cols=56 Identities=11% Similarity=0.023 Sum_probs=37.7
Q ss_pred CCcEEEEecCCCCCCHHH------------HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 316 GANVVVAVNMFATDSKAE------------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 316 GvPvVVAINrF~tDT~~E------------i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
++|+++++|+..-..+.+ .+...+++++.|...+.. .=++=|+|-.+|-+.+++.+
T Consensus 112 ~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 112 GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIE--CSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEE--EECCCCCCHHHHHHHHHHHH
Confidence 899999999965322222 245567788788633433 33567889888888887765
No 124
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=55.14 E-value=30 Score=33.37 Aligned_cols=80 Identities=9% Similarity=0.091 Sum_probs=47.2
Q ss_pred HHHHHHhhc--CCcEEEEecCCCCCCHHHH--------HHHHHHHHHcCC--CeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 307 RHIANTKAY--GANVVVAVNMFATDSKAEL--------NAVRNAAMAAGA--FDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 307 kHIeNi~~f--GvPvVVAINrF~tDT~~Ei--------~~v~~~c~~~Gv--~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
+.+..++++ ++|+||++|+-.-..+++. +.+.++|++.|+ ..+..+..|. +|..++-..++..
T Consensus 104 ~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~---~~i~e~~~~iv~~-- 178 (307)
T 3r7w_A 104 KALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD---ESLYKAWSQIVCS-- 178 (307)
T ss_dssp HHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS---SHHHHHHHHHHHT--
T ss_pred HHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC---ChHHHHHHHHHHH--
Confidence 344445443 8999999999865553333 566788888883 3577777777 3444444343332
Q ss_pred cCCCCccccCCCCCCHHHHHHHHHH
Q 010734 375 NVTQPLKFLYPLDVSIKEKIDTIAR 399 (502)
Q Consensus 375 ~~~~~fk~LY~~~~sI~eKIe~IA~ 399 (502)
+.+.-..+++.++.++.
T Consensus 179 --------li~~~~~le~~l~~~~~ 195 (307)
T 3r7w_A 179 --------LIPNMSNHQSNLKKFKE 195 (307)
T ss_dssp --------TCSCHHHHHHHHHHHHH
T ss_pred --------HcCCHHHHHHHHHHHHh
Confidence 12222345666666665
No 125
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=54.86 E-value=17 Score=30.88 Aligned_cols=66 Identities=14% Similarity=0.004 Sum_probs=43.4
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCe----EEEcCccccCccchhHHHHHHHHHhhc
Q 010734 309 IANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFD----AVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 309 IeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~----~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
.+.++..++|+++++|+-.-..+. -+.+.+++++.|... ..+-+.=++-|+|-.+|-+.+++.+.+
T Consensus 115 ~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 115 YQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp HHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 344556899999999996544332 334567777778631 011233356789999998888887754
No 126
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=53.67 E-value=35 Score=28.73 Aligned_cols=63 Identities=8% Similarity=-0.084 Sum_probs=38.3
Q ss_pred HHHHhh---cCCcEEEEecCCCCC----CHHHHHHHHHHHHHc-CCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 309 IANTKA---YGANVVVAVNMFATD----SKAELNAVRNAAMAA-GAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 309 IeNi~~---fGvPvVVAINrF~tD----T~~Ei~~v~~~c~~~-Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
+..++. -++|+|++.|+-.-. ..-..+.+.+++++. +.. +.. .=++=|+|-.+|-+.+++.+.
T Consensus 98 i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~-~~~--~Sa~~~~~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 98 LSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCS-YYE--TXATYGLNVDRVFQEVAQKVV 168 (178)
T ss_dssp HHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEE-EEE--EBTTTTBTHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCe-EEE--EeccccCCHHHHHHHHHHHHH
Confidence 444444 389999999996431 111223445677765 453 333 335678888888777776654
No 127
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=53.34 E-value=33 Score=37.08 Aligned_cols=97 Identities=15% Similarity=0.267 Sum_probs=55.9
Q ss_pred cchhccccccccCCCC-CCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCc-EE
Q 010734 243 GAEKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGAN-VV 320 (502)
Q Consensus 243 GaEKF~dIkcr~~gl~-P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvP-vV 320 (502)
|-|+|. +-...++. .|++|+|.-+..=.+..+... ......|+..++..|+| +|
T Consensus 254 G~e~f~--~~~~~~~~~aD~~llVVDa~~g~~e~~~~~----------------------~~qt~e~l~~~~~lgi~~iI 309 (611)
T 3izq_1 254 GHRDFV--PNAIMGISQADMAILCVDCSTNAFESGFDL----------------------DGQTKEHMLLASSLGIHNLI 309 (611)
T ss_dssp SSSCHH--HHHTTTSSCCSEEEEEEECSHHHHHTTCCT----------------------TSHHHHHHHHHHTTTCCEEE
T ss_pred CCcccH--HHHHHHHhhcCceEEEEECCCCcccccchh----------------------hhHHHHHHHHHHHcCCCeEE
Confidence 345663 44555554 899999987553222222210 13567789999999987 99
Q ss_pred EEecCCCCCC--HHHH----HHHHHHHHHcCCC----eEEEcCccccCccchhHH
Q 010734 321 VAVNMFATDS--KAEL----NAVRNAAMAAGAF----DAVVCSHHAHGGKGAVDL 365 (502)
Q Consensus 321 VAINrF~tDT--~~Ei----~~v~~~c~~~Gv~----~~~vs~~wakGGeGa~eL 365 (502)
|++|+.-.-. ++.+ +.+.+++++.|.. .+..+. +.-|+|-.+|
T Consensus 310 VVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vS--A~tG~gI~el 362 (611)
T 3izq_1 310 IAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPIS--GFSGEGVYKI 362 (611)
T ss_dssp EEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECC--TTTCTTTSSC
T ss_pred EEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeee--cccCCCcccc
Confidence 9999975433 3333 3444555555542 244333 4456665443
No 128
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=53.13 E-value=19 Score=30.91 Aligned_cols=58 Identities=9% Similarity=-0.061 Sum_probs=40.2
Q ss_pred cCCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 315 YGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 315 fGvPvVVAINrF~tDT-~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
.++|+||++|+-.-.. +...+...+++++.|+. +..+ =++-|+|-.+|-+.+++.+.+
T Consensus 113 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 113 EDIPVMLVGNKCDETQREVDTREAQAVAQEWKCA-FMET--SAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp GGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCE-EEEC--BTTTTBSHHHHHHHHHHHCSS
T ss_pred CCCCEEEEEECccCCccccCHHHHHHHHHHhCCe-EEEE--ecCCCCCHHHHHHHHHHHHhh
Confidence 4899999999975422 11234456677778874 4333 356789999999999988754
No 129
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=53.05 E-value=77 Score=28.76 Aligned_cols=102 Identities=15% Similarity=0.149 Sum_probs=62.3
Q ss_pred ccHHHHHHHHhhHHHHHHHHhhcCCcEEEEec-CCCC---CCH-------HHHHHHHHHHHHcCCCeEEEcCcccc---C
Q 010734 293 ENVALVEAGCVNLARHIANTKAYGANVVVAVN-MFAT---DSK-------AELNAVRNAAMAAGAFDAVVCSHHAH---G 358 (502)
Q Consensus 293 eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAIN-rF~t---DT~-------~Ei~~v~~~c~~~Gv~~~~vs~~wak---G 358 (502)
++.+.-++.+..+++.|+..+.+|.+.||.-- .++. +++ +-++.+.+.|++.|+. +++-++... .
T Consensus 73 ~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lE~~~~~~~~~ 151 (275)
T 3qc0_A 73 PDASGREKAIDDNRRAVDEAAELGADCLVLVAGGLPGGSKNIDAARRMVVEGIAAVLPHARAAGVP-LAIEPLHPMYAAD 151 (275)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTTCSCEEEECBCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHTCC-EEECCCCGGGTTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEeECCCcccCC
Confidence 45566778889999999999999999998753 3442 333 2355566677788996 777764211 1
Q ss_pred c--cchhHHHHHHHHHhhcCCCCccccCCC-----CCCHHHHHHHHH
Q 010734 359 G--KGAVDLGIAVQRACENVTQPLKFLYPL-----DVSIKEKIDTIA 398 (502)
Q Consensus 359 G--eGa~eLA~~Vv~a~e~~~~~fk~LY~~-----~~sI~eKIe~IA 398 (502)
+ -...+-+.++++.+. + ++.+.+|. +.++.+-|+.+.
T Consensus 152 ~~~~~~~~~~~~l~~~~~--~-~vg~~~D~~h~~~~~d~~~~l~~~~ 195 (275)
T 3qc0_A 152 RACVNTLGQALDICETLG--P-GVGVAIDVYHVWWDPDLANQIARAG 195 (275)
T ss_dssp TBSCCCHHHHHHHHHHHC--T-TEEEEEEHHHHTTCTTHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHhC--c-ccEEEEEhhhheeCCCHHHHHHHcC
Confidence 1 112333445566553 2 45544431 245666666665
No 130
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=53.02 E-value=16 Score=32.69 Aligned_cols=59 Identities=12% Similarity=0.035 Sum_probs=38.6
Q ss_pred hhcCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 313 KAYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 313 ~~fGvPvVVAINrF~tDT~~E--i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
...++|+|++.|+-.-..+.+ .+.+++++++.|+. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 128 ~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~g~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 128 ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMY-YLETS--AKESDNVEKLFLDLACRLI 188 (201)
T ss_dssp SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCC-EEECC--TTTCTTHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 345899999999964322111 23456777778885 44333 5668888888877776664
No 131
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=52.70 E-value=11 Score=39.13 Aligned_cols=67 Identities=16% Similarity=0.021 Sum_probs=47.9
Q ss_pred HHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 306 ARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 306 ~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
.+.++.++++++|+||++|+-.-..+++.+...+++++.|+. +. ..=++-|+|-.+|-+.+++.+.+
T Consensus 130 ~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~-v~--~vSAktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 130 DDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGLYESRYEAK-VL--LVSALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp HHHHHHHHHTTCCEEEECCCCTTTTCCCTHHHHHSSCCTTCC-CC--CCSSCCTTSTTTHHHHHHHHSCC
T ss_pred HHHHHHHHhcCCCEEEEEeCcCCCCccHHHHHHHHHHHcCCC-EE--EEECCCCCCHHHHHHHHHHhhhh
Confidence 445666777899999999996554444445566666667774 33 33466789999999999998853
No 132
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=52.54 E-value=7.4 Score=33.13 Aligned_cols=62 Identities=21% Similarity=0.175 Sum_probs=38.7
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHHHH-HHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 309 IANTKAYGANVVVAVNMFATDSKAEL-NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 309 IeNi~~fGvPvVVAINrF~tDT~~Ei-~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
++.+++.++|+|++.|+-.-..+.++ ....+++++.|.. +..+ =++=|+|-.+|-+.+.+.+
T Consensus 101 ~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~--SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 101 TLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVK-VVPL--SAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp HHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSC-EEEC--BGGGTBSHHHHHHHHHHHT
T ss_pred HHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHhCCC-EEEE--EcCCCCCHHHHHHHHHHHh
Confidence 44455579999999998421111011 0245667777875 4333 3677899988888877665
No 133
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=52.50 E-value=15 Score=30.34 Aligned_cols=57 Identities=12% Similarity=0.047 Sum_probs=36.4
Q ss_pred hcCCcEEEEecCCCCCCH---H--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 314 AYGANVVVAVNMFATDSK---A--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 314 ~fGvPvVVAINrF~tDT~---~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
..++|+++++|+..-..+ . ..+...+++++.|+. +..+. ++=|+|-.+|-+.+.+.+
T Consensus 106 ~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 106 SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLL-FFETS--AKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCE-EEECC--TTTCTTHHHHHHHHHTTS
T ss_pred CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHH
Confidence 358999999998643221 1 123456677778874 44433 455888888877776554
No 134
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=52.38 E-value=21 Score=30.60 Aligned_cols=56 Identities=14% Similarity=0.104 Sum_probs=37.1
Q ss_pred CCcEEEEecCCCCCCHH--------------HHHHHHHHHHHcCCCeEEEcCcccc-CccchhHHHHHHHHHh
Q 010734 316 GANVVVAVNMFATDSKA--------------ELNAVRNAAMAAGAFDAVVCSHHAH-GGKGAVDLGIAVQRAC 373 (502)
Q Consensus 316 GvPvVVAINrF~tDT~~--------------Ei~~v~~~c~~~Gv~~~~vs~~wak-GGeGa~eLA~~Vv~a~ 373 (502)
++|+|++.|+..-..+. ..+...+++++.|...+. +.=++ +|+|-.+|-+.+++.+
T Consensus 111 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 111 NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYI--ECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE--ECBTTTBHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEE--EeeecCCCcCHHHHHHHHHHHH
Confidence 89999999997543211 123466788877742343 33455 7888888888877765
No 135
>1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM, hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3
Probab=52.26 E-value=37 Score=35.19 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=47.3
Q ss_pred HHHHHHHHhhcCCcEE-EEec---CCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccch
Q 010734 305 LARHIANTKAYGANVV-VAVN---MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGA 362 (502)
Q Consensus 305 L~kHIeNi~~fGvPvV-VAIN---rF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa 362 (502)
.++.|+.|+..|.++| +.++ .|..+.-+.++.+.++|.+.|.. +++.-|...|+.+.
T Consensus 41 ~~~di~~ik~~G~N~VRipv~~g~~~~~~~l~~ld~vv~~a~~~Gl~-VIlDlH~~~g~~~~ 101 (464)
T 1wky_A 41 ATTAIEGIANTGANTVRIVLSDGGQWTKDDIQTVRNLISLAEDNNLV-AVLEVHDATGYDSI 101 (464)
T ss_dssp HHHHHHHHHTTTCSEEEEEECCSSSSCCCCHHHHHHHHHHHHHTTCE-EEEEECTTTTCCCH
T ss_pred hHHHHHHHHHCCCCEEEEEcCCCCccCHHHHHHHHHHHHHHHHCCCE-EEEEecCCCCCCCh
Confidence 3567889999999999 7776 57788899999999999999995 88887877766543
No 136
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=52.01 E-value=31 Score=30.29 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=41.2
Q ss_pred HHHHHhhc--CCcEEEEecCCCCCCHHH--------------HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 010734 308 HIANTKAY--GANVVVAVNMFATDSKAE--------------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 371 (502)
Q Consensus 308 HIeNi~~f--GvPvVVAINrF~tDT~~E--------------i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~ 371 (502)
.++.++++ ++|+||++|+-.-..+++ .+...+++.+.+...+. +.=++=|+|-.+|-+.+++
T Consensus 119 ~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~SA~~g~gi~el~~~l~~ 196 (207)
T 2fv8_A 119 WVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYL--ECSAKTKEGVREVFETATR 196 (207)
T ss_dssp HHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE--ECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEE--EeeCCCCCCHHHHHHHHHH
Confidence 34444544 899999999965432221 12345667777763233 3335668898898888888
Q ss_pred Hhh
Q 010734 372 ACE 374 (502)
Q Consensus 372 a~e 374 (502)
.+-
T Consensus 197 ~i~ 199 (207)
T 2fv8_A 197 AAL 199 (207)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 137
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=51.88 E-value=49 Score=30.56 Aligned_cols=125 Identities=14% Similarity=0.190 Sum_probs=67.3
Q ss_pred ccHHHHHHHHhhH---HHHHHHHhh-cCCcEEEEe--c-CCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHH
Q 010734 293 ENVALVEAGCVNL---ARHIANTKA-YGANVVVAV--N-MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDL 365 (502)
Q Consensus 293 eNl~AL~~G~~NL---~kHIeNi~~-fGvPvVVAI--N-rF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eL 365 (502)
-+..||+.|. |+ ...|+.+++ +.+|+++-. | .|..+.++.+ +.|.+.|+..+.+. ... ..+
T Consensus 54 ~~~~al~~g~-~~~~~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~~----~~~~~~Gad~v~~~-~~~-----~~~- 121 (248)
T 1geq_A 54 SHYRALKNGF-KLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFL----AEAKASGVDGILVV-DLP-----VFH- 121 (248)
T ss_dssp HHHHHHHTTC-CHHHHHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHH----HHHHHHTCCEEEET-TCC-----GGG-
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHhhCCCCEEEEeccchhhhcCHHHHH----HHHHHCCCCEEEEC-CCC-----hhh-
Confidence 3446777775 54 577888877 689988876 5 3444444444 45667899644443 221 122
Q ss_pred HHHHHHHhhcCCCCccccCCCCCCHHHHHHHHHH-----Hh-----CCCce--eeCHHHHHHHHHHHHCCCCCCCeeEe
Q 010734 366 GIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-----SY-----GASGV--EYSEEAEKQIEMYTGQGFSGLPICMA 432 (502)
Q Consensus 366 A~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~-----IY-----GA~~V--~fS~~A~kqLk~ie~~Gf~~LPVCmA 432 (502)
++.+++.+.+....+-+..+... ..+.++.+.. +| |..+- .+.+...+.++++.+.- ++||+..
T Consensus 122 ~~~~~~~~~~~g~~~~~~i~~~t-~~e~~~~~~~~~d~~i~~~~~~G~~g~~~~~~~~~~~~i~~l~~~~--~~pi~~~ 197 (248)
T 1geq_A 122 AKEFTEIAREEGIKTVFLAAPNT-PDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRIC--RNKVAVG 197 (248)
T ss_dssp HHHHHHHHHHHTCEEEEEECTTC-CHHHHHHHHHHCSSEEEEECCC-------CCCHHHHHHHHHHHHHC--SSCEEEE
T ss_pred HHHHHHHHHHhCCCeEEEECCCC-HHHHHHHHHhcCCCeEEEEECCccCCCCCCCChhHHHHHHHHHhhc--CCCEEEE
Confidence 45566666532222334444433 3445555543 11 11111 14566677788887752 5788763
No 138
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=51.75 E-value=34 Score=32.30 Aligned_cols=123 Identities=13% Similarity=0.199 Sum_probs=66.2
Q ss_pred cHHHHHHHH--hhHHHHHHHHhh-cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHH
Q 010734 294 NVALVEAGC--VNLARHIANTKA-YGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQ 370 (502)
Q Consensus 294 Nl~AL~~G~--~NL~kHIeNi~~-fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv 370 (502)
+..|+++|+ ..+...++.+++ +++|+++-. +.. ......+ +.|.+.|+..+.+. +...+-++.++
T Consensus 69 ~~~al~~g~~~~~~~~~i~~ir~~~~~Pv~~m~--~~~--~~~~~~~-~~a~~aGadgv~v~-------d~~~~~~~~~~ 136 (262)
T 1rd5_A 69 VARALASGTTMDAVLEMLREVTPELSCPVVLLS--YYK--PIMFRSL-AKMKEAGVHGLIVP-------DLPYVAAHSLW 136 (262)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHGGGCSSCEEEEC--CSH--HHHSCCT-HHHHHTTCCEEECT-------TCBTTTHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEe--cCc--HHHHHHH-HHHHHcCCCEEEEc-------CCChhhHHHHH
Confidence 345566665 223466777776 689977631 111 1110111 22888999645442 22233466666
Q ss_pred HHhhcCCCCccccCCCCCCHHHHHHHHHH-----Hh-----CCCce--eeCHHHHHHHHHHHHCCCCCCCeeE
Q 010734 371 RACENVTQPLKFLYPLDVSIKEKIDTIAR-----SY-----GASGV--EYSEEAEKQIEMYTGQGFSGLPICM 431 (502)
Q Consensus 371 ~a~e~~~~~fk~LY~~~~sI~eKIe~IA~-----IY-----GA~~V--~fS~~A~kqLk~ie~~Gf~~LPVCm 431 (502)
+.+.+..-..-++.....+ .+.++.++. +| |-.+. .+.+...+.++++.+.- ++|||+
T Consensus 137 ~~~~~~g~~~i~~~a~~t~-~e~~~~~~~~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~v~~~~--~~pI~v 206 (262)
T 1rd5_A 137 SEAKNNNLELVLLTTPAIP-EDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVT--NKPVAV 206 (262)
T ss_dssp HHHHHTTCEECEEECTTSC-HHHHHHHHHHCCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHC--SSCEEE
T ss_pred HHHHHcCCceEEEECCCCC-HHHHHHHHhcCCCeEEEecCCCCCCCCcCCCchHHHHHHHHHhhc--CCeEEE
Confidence 6665422223455555544 445666553 22 21222 46677778888888753 789987
No 139
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=51.64 E-value=16 Score=32.24 Aligned_cols=64 Identities=11% Similarity=0.059 Sum_probs=40.2
Q ss_pred HHHHHHhhc--CCcEEEEecCCCCCCHHH--------------HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHH
Q 010734 307 RHIANTKAY--GANVVVAVNMFATDSKAE--------------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQ 370 (502)
Q Consensus 307 kHIeNi~~f--GvPvVVAINrF~tDT~~E--------------i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv 370 (502)
..++.++++ ++|+||++|+-.-..+.+ .+...+++++.|...+.. .=++-|+|-.+|-+.++
T Consensus 123 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~SA~~g~gi~~l~~~l~ 200 (204)
T 4gzl_A 123 KWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE--CSALTQRGLKTVFDEAI 200 (204)
T ss_dssp THHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE--CCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEE--eeCCCCCCHHHHHHHHH
Confidence 334455554 899999999864322221 234567788888743433 33567888888877776
Q ss_pred HH
Q 010734 371 RA 372 (502)
Q Consensus 371 ~a 372 (502)
+.
T Consensus 201 ~~ 202 (204)
T 4gzl_A 201 RA 202 (204)
T ss_dssp HT
T ss_pred HH
Confidence 54
No 140
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=51.62 E-value=36 Score=31.12 Aligned_cols=85 Identities=11% Similarity=-0.022 Sum_probs=52.2
Q ss_pred HHHHHHhhHHHHHHHHhhcCCcEEEEecCCCC--C-CH-------HHHHHHHHHHHHcCCCeEEEcCc-----cccCc--
Q 010734 297 LVEAGCVNLARHIANTKAYGANVVVAVNMFAT--D-SK-------AELNAVRNAAMAAGAFDAVVCSH-----HAHGG-- 359 (502)
Q Consensus 297 AL~~G~~NL~kHIeNi~~fGvPvVVAINrF~t--D-T~-------~Ei~~v~~~c~~~Gv~~~~vs~~-----wakGG-- 359 (502)
..++.+..+++.|+..+.+|.+.|+. .-++. + ++ +.+..+.+.|++.|+. +++-++ |...+
T Consensus 78 ~~~~~~~~~~~~i~~A~~lG~~~v~~-~~~p~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~~~~~~~~~~~~~ 155 (281)
T 3u0h_A 78 VFLRELSLLPDRARLCARLGARSVTA-FLWPSMDEEPVRYISQLARRIRQVAVELLPLGMR-VGLEYVGPHHLRHRRYPF 155 (281)
T ss_dssp HHHHHHHTHHHHHHHHHHTTCCEEEE-ECCSEESSCHHHHHHHHHHHHHHHHHHHGGGTCE-EEEECCCCGGGCCSSEEC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEE-eecCCCCCcchhhHHHHHHHHHHHHHHHHHcCCE-EEEEeccccccccccccc
Confidence 36678899999999999999999984 23332 1 22 2344455666788995 777665 21111
Q ss_pred cchhHHHHHHHHHhhcCCCCccccCC
Q 010734 360 KGAVDLGIAVQRACENVTQPLKFLYP 385 (502)
Q Consensus 360 eGa~eLA~~Vv~a~e~~~~~fk~LY~ 385 (502)
-...+-+..+++.+. +.++.++||
T Consensus 156 ~~~~~~~~~l~~~v~--~~~vg~~~D 179 (281)
T 3u0h_A 156 VQSLADLKTFWEAIG--APNVGALVD 179 (281)
T ss_dssp CCSHHHHHHHHHHHC--CTTEEEEEE
T ss_pred cCCHHHHHHHHHHcC--CCCeeEEee
Confidence 123344456666664 234666665
No 141
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=51.27 E-value=35 Score=30.27 Aligned_cols=66 Identities=9% Similarity=0.012 Sum_probs=43.1
Q ss_pred HHHHHhhc--CCcEEEEecCCCCCCHHHH--------------HHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 010734 308 HIANTKAY--GANVVVAVNMFATDSKAEL--------------NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 371 (502)
Q Consensus 308 HIeNi~~f--GvPvVVAINrF~tDT~~Ei--------------~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~ 371 (502)
.++.++.+ ++|+|+++|+-.-..+.+. +..++++++.|...+.. .=++-|+|-.+|-+.+++
T Consensus 128 ~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~SA~~g~gi~el~~~l~~ 205 (214)
T 2j1l_A 128 WYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLE--CSARLHDNVHAVFQEAAE 205 (214)
T ss_dssp HHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE--CBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEE--ecCCCCCCHHHHHHHHHH
Confidence 34444443 8999999999654333222 33467788888733433 335778999999888887
Q ss_pred Hhhc
Q 010734 372 ACEN 375 (502)
Q Consensus 372 a~e~ 375 (502)
.+.+
T Consensus 206 ~~~~ 209 (214)
T 2j1l_A 206 VALS 209 (214)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 142
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=51.20 E-value=69 Score=29.12 Aligned_cols=80 Identities=10% Similarity=0.040 Sum_probs=49.0
Q ss_pred hhHHHHHHHHhhcCCcEEEEecCCCC-CC-----HHHHHHHHHHHHHcCCCeEEEcCccccCc-cchhHHHHHHHHHhhc
Q 010734 303 VNLARHIANTKAYGANVVVAVNMFAT-DS-----KAELNAVRNAAMAAGAFDAVVCSHHAHGG-KGAVDLGIAVQRACEN 375 (502)
Q Consensus 303 ~NL~kHIeNi~~fGvPvVVAINrF~t-DT-----~~Ei~~v~~~c~~~Gv~~~~vs~~wakGG-eGa~eLA~~Vv~a~e~ 375 (502)
..+++.|+..+.+|.+.||..=-+.. +. .+-++.+.+.|++.|+. +++-++.-.+. -...+-+.++++.+.
T Consensus 85 ~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~~E~~~~~~~~~~~~~~~~~l~~~v~- 162 (272)
T 2q02_A 85 KKTEGLLRDAQGVGARALVLCPLNDGTIVPPEVTVEAIKRLSDLFARYDIQ-GLVEPLGFRVSSLRSAVWAQQLIREAG- 162 (272)
T ss_dssp HHHHHHHHHHHHHTCSEEEECCCCSSBCCCHHHHHHHHHHHHHHHHTTTCE-EEECCCCSTTCSCCCHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHhCCCEEEEccCCCchhHHHHHHHHHHHHHHHHHHHcCCE-EEEEecCCCcccccCHHHHHHHHHHhC-
Confidence 56899999999999999987321111 11 45556667778888995 77777642111 112333335666654
Q ss_pred CCCCccccCCC
Q 010734 376 VTQPLKFLYPL 386 (502)
Q Consensus 376 ~~~~fk~LY~~ 386 (502)
.++...||.
T Consensus 163 --~~~g~~~D~ 171 (272)
T 2q02_A 163 --SPFKVLLDT 171 (272)
T ss_dssp --CCCEEEEEH
T ss_pred --cCeEEEEEc
Confidence 257777754
No 143
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=51.09 E-value=8.9 Score=31.59 Aligned_cols=57 Identities=14% Similarity=0.083 Sum_probs=36.6
Q ss_pred HhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 312 TKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 312 i~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
+++.++|+++++|+-.-..+ -+.+.+++ +.|...+..+. ++-|+|-.+|-+.+++.+
T Consensus 104 ~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~-~~~~~~~~~~S--a~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 104 LRRKGKPVILVATKVDDPKH--ELYLGPLY-GLGFGDPIPTS--SEHARGLEELLEAIWERL 160 (161)
T ss_dssp HHHHTCCEEEEEECCCSGGG--GGGCGGGG-GGSSCSCEECB--TTTTBSHHHHHHHHHHHC
T ss_pred HHhcCCCEEEEEECcccccc--hHhHHHHH-hCCCCCeEEEe--cccCCChHHHHHHHHHhC
Confidence 33478999999999644322 23445555 56762233333 677899888888777653
No 144
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=50.92 E-value=34 Score=34.29 Aligned_cols=43 Identities=21% Similarity=0.189 Sum_probs=29.8
Q ss_pred hHHHHHHHHhhcCCc-EEEEecCCCCC-CHHHHH----HHHHHHHHcCC
Q 010734 304 NLARHIANTKAYGAN-VVVAVNMFATD-SKAELN----AVRNAAMAAGA 346 (502)
Q Consensus 304 NL~kHIeNi~~fGvP-vVVAINrF~tD-T~~Ei~----~v~~~c~~~Gv 346 (502)
...+|++.++.+|+| +||++|+-.-. .++.++ .+++++++.|.
T Consensus 115 qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (405)
T 2c78_A 115 QTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 163 (405)
T ss_dssp HHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence 446788888889999 89999997543 333333 45667777773
No 145
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=50.80 E-value=4.8 Score=35.34 Aligned_cols=69 Identities=12% Similarity=0.121 Sum_probs=40.0
Q ss_pred hhHHHHHHHHhhc---CCcEEEEecCCCCCCHHHH--HHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 303 VNLARHIANTKAY---GANVVVAVNMFATDSKAEL--NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 303 ~NL~kHIeNi~~f---GvPvVVAINrF~tDT~~Ei--~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
.++.+.++.++.+ ++|+|+++|+..-..+.++ +...+++++.|+. +. +.=++=|+|-.+|-+.+++.+.
T Consensus 122 ~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~--~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 122 NNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP-FL--ETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp HHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCC-BC--CCCC---HHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCe-EE--EEECCCCCCHHHHHHHHHHHHH
Confidence 3444455555554 8999999999765443322 3456778888875 33 3346678888888777766553
No 146
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=50.68 E-value=52 Score=29.51 Aligned_cols=122 Identities=12% Similarity=0.061 Sum_probs=67.3
Q ss_pred CCeEEeeccccccccchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHH
Q 010734 229 GGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARH 308 (502)
Q Consensus 229 ~dyvVTEAGFgaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kH 308 (502)
.||||-+.+-+.+.-..-.+. .-|.+|+|++-. . ..+..+.+.
T Consensus 119 yD~viiD~p~~~~~~~~~~l~--------~ad~viiv~~~~-------------------------~----~~~~~~~~~ 161 (245)
T 3ea0_A 119 YDYIIVDFGASIDHVGVWVLE--------HLDELCIVTTPS-------------------------L----QSLRRAGQL 161 (245)
T ss_dssp CSEEEEEEESSCCTTHHHHGG--------GCSEEEEEECSS-------------------------H----HHHHHHHHH
T ss_pred CCEEEEeCCCCCchHHHHHHH--------HCCEEEEEecCc-------------------------H----HHHHHHHHH
Confidence 499999887665443222222 257788877621 1 122345555
Q ss_pred HHHHhhcCC---cEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCC
Q 010734 309 IANTKAYGA---NVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYP 385 (502)
Q Consensus 309 IeNi~~fGv---PvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~ 385 (502)
++.++++|. .+-+.+|++...+....+.++ +..|.. +...-.+. -+.+.++...+ ..-+.|.
T Consensus 162 ~~~l~~~~~~~~~~~~v~N~~~~~~~~~~~~~~---~~~~~~-v~~~ip~~---------~~~~~~a~~~g--~~v~~~~ 226 (245)
T 3ea0_A 162 LKLCKEFEKPISRIEIILNRADTNSRITSDEIE---KVIGRP-ISKRIPQD---------EDAMQESLLSG--QSVLKVA 226 (245)
T ss_dssp HHHHHTCSSCCSCEEEEEESTTSCTTSCHHHHH---HHHTSC-EEEEECCC---------HHHHHHHHHHT--SCHHHHC
T ss_pred HHHHHHhCCCccceEEEEecCCCCCCCCHHHHH---HHhCCC-eEEECCCC---------hHHHHHHHHcC--CCccccC
Confidence 666667764 378899999877654333333 345664 33221111 12344444432 1233456
Q ss_pred CCCCHHHHHHHHHH-HhC
Q 010734 386 LDVSIKEKIDTIAR-SYG 402 (502)
Q Consensus 386 ~~~sI~eKIe~IA~-IYG 402 (502)
.+.+..+-++.+|+ +-|
T Consensus 227 ~~s~~~~~~~~la~~l~g 244 (245)
T 3ea0_A 227 PKSQLSKTIVDWALHLNG 244 (245)
T ss_dssp TTSHHHHHHHHHHHCC--
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 66778888888887 643
No 147
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=50.21 E-value=20 Score=33.75 Aligned_cols=59 Identities=7% Similarity=-0.012 Sum_probs=33.3
Q ss_pred HHhhcCCcEEEEecCCCCCCHHHHHH----HHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 311 NTKAYGANVVVAVNMFATDSKAELNA----VRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 311 Ni~~fGvPvVVAINrF~tDT~~Ei~~----v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
.++. ++|+|+++|+-..-+++|++. +++.+...|+. + ...=++-|+|-.+|.+.+.+.+
T Consensus 140 ~l~~-~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~-v--~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 140 RLHE-KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIK-I--YEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHTT-TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCC-C--CCC-----------CHHHHHTC
T ss_pred HHhc-cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCe-E--EcCCCCCChhHHHHHHHHhcCC
Confidence 3444 899999999988888888854 45556667875 2 2223567888888887776643
No 148
>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A*
Probab=49.87 E-value=28 Score=33.11 Aligned_cols=52 Identities=19% Similarity=0.307 Sum_probs=43.1
Q ss_pred HHHHHHhhcCCcEE-EEec---CCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCc
Q 010734 307 RHIANTKAYGANVV-VAVN---MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGG 359 (502)
Q Consensus 307 kHIeNi~~fGvPvV-VAIN---rF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGG 359 (502)
+.++.|+..|+++| +.++ .+..+..+.++.+.++|.+.|.. +.+.-|...|.
T Consensus 36 ~~~~~lk~~G~N~VRi~~~~~~~w~~~~~~~ld~~v~~a~~~Gi~-Vild~h~~~~~ 91 (302)
T 1bqc_A 36 QAFADIKSHGANTVRVVLSNGVRWSKNGPSDVANVISLCKQNRLI-CMLEVHDTTGY 91 (302)
T ss_dssp THHHHHHHTTCSEEEEEECCSSSSCCCCHHHHHHHHHHHHHTTCE-EEEEEGGGTTT
T ss_pred HHHHHHHHcCCCEEEEEccCCcccCCCCHHHHHHHHHHHHHCCCE-EEEEeccCCCC
Confidence 56888899999999 7777 57777889999999999999995 88887766554
No 149
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}
Probab=49.85 E-value=1.4e+02 Score=30.14 Aligned_cols=101 Identities=13% Similarity=0.030 Sum_probs=56.1
Q ss_pred HHhhHHHHHHHH--hhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCc---cccCccc---hhHHHHHHHHH
Q 010734 301 GCVNLARHIANT--KAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSH---HAHGGKG---AVDLGIAVQRA 372 (502)
Q Consensus 301 G~~NL~kHIeNi--~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~---wakGGeG---a~eLA~~Vv~a 372 (502)
|+..+.+++... +.++.|++|-|+ .++.+|.....+.+++.|+.++..-+. -.+||.- ..++..+++++
T Consensus 111 G~~~~~~~l~~~~~~~~~~pvivsI~---g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~G~~~l~~~~e~l~~il~a 187 (345)
T 3oix_A 111 GINYYLDYVTELQKQPDSKNHFLSLV---GMSPEETHTILXMVEASKYQGLVELNLSCPNVPGXPQIAYDFETTDQILSE 187 (345)
T ss_dssp CHHHHHHHHHHHHHSTTCCCCEEEEC---CSSHHHHHHHHHHHHHSSCCSEEEEECSCCCSTTCCCGGGCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhccCCCCEEEEec---CCCHHHHHHHHHHHhccCCCcEEEEecCCCCcCCchhhcCCHHHHHHHHHH
Confidence 334444455443 347899988776 467888888888888778742333222 2345531 23667777777
Q ss_pred hhcCCCCccccC---CCCCCHHHHHHHHHHHhCCCcee
Q 010734 373 CENVTQPLKFLY---PLDVSIKEKIDTIARSYGASGVE 407 (502)
Q Consensus 373 ~e~~~~~fk~LY---~~~~sI~eKIe~IA~IYGA~~V~ 407 (502)
+.+..+ .|++ ..+.++. .+..+|..-|+++|.
T Consensus 188 v~~~~~--~PV~vKi~p~~~~~-~~a~~~~~aga~~i~ 222 (345)
T 3oix_A 188 VFTYFT--KPLGIKLPPYFDIV-HFDQAAAIFNXYPLT 222 (345)
T ss_dssp HTTTCC--SCEEEEECCCCCHH-HHHHHHHHHTTSCCS
T ss_pred HHHHhC--CCeEEEECCCCCHH-HHHHHHHHhCCCceE
Confidence 754211 2222 1223443 355566655666553
No 150
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=49.75 E-value=33 Score=29.30 Aligned_cols=61 Identities=15% Similarity=0.121 Sum_probs=38.6
Q ss_pred HHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHH-c----CCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 311 NTKAYGANVVVAVNMFATDSKAELNAVRNAAMA-A----GAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 311 Ni~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~-~----Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
.++..++|+++++|+..-..++|++...+..++ . +. .+. +.=++-|+|-.+|-+.+.+.+.
T Consensus 129 ~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 129 FLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPED-ELI--LFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp HHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTS-EEE--ECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCC-ceE--EEEccCCCCHHHHHHHHHHHhc
Confidence 344589999999999766555555443333322 2 33 233 3335667888888888877653
No 151
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=49.65 E-value=31 Score=29.72 Aligned_cols=66 Identities=9% Similarity=-0.015 Sum_probs=44.1
Q ss_pred HHHHHhhc--CCcEEEEecCCCCC----CHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 308 HIANTKAY--GANVVVAVNMFATD----SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 308 HIeNi~~f--GvPvVVAINrF~tD----T~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
.++.++++ ++|+|++.|+-.-- .+...+.+.+++++.|+..+. +.=++=|+|-.+|-+.+++.+.+
T Consensus 117 ~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 117 WEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYI--EASSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp HHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEE--ECBTTTTBSHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEE--EeecCCCCCHHHHHHHHHHHHHh
Confidence 33444443 79999999986431 112234566788888885233 34467789999999998888764
No 152
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=49.48 E-value=62 Score=34.16 Aligned_cols=52 Identities=13% Similarity=0.134 Sum_probs=39.6
Q ss_pred hhHHHHHHHHhhcCCcEEEEecCCCCC---CHHHHHHHHHHHHHcCCCeEEEcCcc
Q 010734 303 VNLARHIANTKAYGANVVVAVNMFATD---SKAELNAVRNAAMAAGAFDAVVCSHH 355 (502)
Q Consensus 303 ~NL~kHIeNi~~fGvPvVVAINrF~tD---T~~Ei~~v~~~c~~~Gv~~~~vs~~w 355 (502)
.|+...|+-+++.|..|.+.+ .|..+ +.+.+-.+.+.+.++|+..+.+++.-
T Consensus 127 ~ni~~~i~~ak~~G~~v~~~i-~~~~~~~~~~e~~~~~a~~l~~~Gad~I~l~DT~ 181 (464)
T 2nx9_A 127 RNMQQALQAVKKMGAHAQGTL-CYTTSPVHNLQTWVDVAQQLAELGVDSIALKDMA 181 (464)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE-ECCCCTTCCHHHHHHHHHHHHHTTCSEEEEEETT
T ss_pred HHHHHHHHHHHHCCCEEEEEE-EeeeCCCCCHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 599999999999999999888 55444 44555555666667899877787653
No 153
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=49.22 E-value=40 Score=29.07 Aligned_cols=58 Identities=10% Similarity=-0.044 Sum_probs=38.1
Q ss_pred cCCcEEEEecCCCCCC-HHHHHHHHHHHH-HcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 315 YGANVVVAVNMFATDS-KAELNAVRNAAM-AAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 315 fGvPvVVAINrF~tDT-~~Ei~~v~~~c~-~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
.++|+||++|+-.-.. +...+.+.++++ ..++. +..+. ++-|+|-.+|-+.+.+.+.+
T Consensus 116 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 116 ENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIP-YFETS--AKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp GGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCC-EEECB--TTTTBSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCcccccCHHHHHHHHHhcCCce-EEEEe--CCCCCCHHHHHHHHHHHHHH
Confidence 5899999999965321 122345566776 45664 43333 66789998888888777643
No 154
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=48.31 E-value=83 Score=28.95 Aligned_cols=84 Identities=7% Similarity=0.042 Sum_probs=53.7
Q ss_pred HHHHhhHHHHHHHHhhcCCcEEEEec-CCCC--CCH-------HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHH
Q 010734 299 EAGCVNLARHIANTKAYGANVVVAVN-MFAT--DSK-------AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIA 368 (502)
Q Consensus 299 ~~G~~NL~kHIeNi~~fGvPvVVAIN-rF~t--DT~-------~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~ 368 (502)
++....+++.|+..+.+|.+.|+..- ..+. +++ +-++.+.+.|++.|+. +++-+++..-.. ..+-+..
T Consensus 80 ~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~~~~~~~-~~~~~~~ 157 (286)
T 3dx5_A 80 EKTIEKCEQLAILANWFKTNKIRTFAGQKGSADFSQQERQEYVNRIRMICELFAQHNMY-VLLETHPNTLTD-TLPSTLE 157 (286)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEECSCSSCGGGSCHHHHHHHHHHHHHHHHHHHHTTCE-EEEECCTTSTTS-SHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEcCCCCCcccCcHHHHHHHHHHHHHHHHHHHHhCCE-EEEecCCCcCcC-CHHHHHH
Confidence 44567899999999999999998743 2222 333 3345566777889995 888777543222 2333456
Q ss_pred HHHHhhcCCCCccccCCC
Q 010734 369 VQRACENVTQPLKFLYPL 386 (502)
Q Consensus 369 Vv~a~e~~~~~fk~LY~~ 386 (502)
+++.+. +.++.+.||.
T Consensus 158 l~~~~~--~~~vg~~~D~ 173 (286)
T 3dx5_A 158 LLGEVD--HPNLKINLDF 173 (286)
T ss_dssp HHHHHC--CTTEEEEEEH
T ss_pred HHHhcC--CCCeEEEecc
Confidence 666664 2457776653
No 155
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=48.25 E-value=43 Score=30.81 Aligned_cols=70 Identities=13% Similarity=0.092 Sum_probs=45.5
Q ss_pred HhhHHHHHHHHhh---cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 302 CVNLARHIANTKA---YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 302 ~~NL~kHIeNi~~---fGvPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
|.|+.+.++.+++ -++|+|++.|+-.-..+. ..+...++|++.|+. +. +.=|+=|+|-.++=+.+++.+.
T Consensus 101 f~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~-~~--e~SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 101 FQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVM-FI--ETSAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp HHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EE--EEBTTTTBSHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCe-eE--EEeCCCCcCHHHHHHHHHHHHH
Confidence 3455555555543 479999999996432211 234567888999985 44 3346788998888887777664
No 156
>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}
Probab=48.13 E-value=92 Score=28.71 Aligned_cols=86 Identities=19% Similarity=0.147 Sum_probs=53.7
Q ss_pred HHHHHHhhHHHHHHHHhhcCCcEEEEe-------cCCCC-------C-CHHH-------HHHHHHHHHHcCCCeEEEcCc
Q 010734 297 LVEAGCVNLARHIANTKAYGANVVVAV-------NMFAT-------D-SKAE-------LNAVRNAAMAAGAFDAVVCSH 354 (502)
Q Consensus 297 AL~~G~~NL~kHIeNi~~fGvPvVVAI-------NrF~t-------D-T~~E-------i~~v~~~c~~~Gv~~~~vs~~ 354 (502)
..++.+..+++.|+..+.+|.+.||.- -.+.. . +++. +..+.+.+++.|+. +++-++
T Consensus 84 ~~~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lE~~ 162 (301)
T 3cny_A 84 GIEKASEAFEKHCQYLKAINAPVAVVSEQTYTIQRSDTANIFKDKPYFTDKEWDEVCKGLNHYGEIAAKYGLK-VAYHHH 162 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEEEECTTCCTTCSSCCTTTCCCCCCHHHHHHHHHHHHHHHHHHHHTTCE-EEEECC
T ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEecCCCccccCcccCCcccccccCcHHHHHHHHHHHHHHHHHHHHcCCE-EEEecC
Confidence 456778899999999999999998875 12211 1 4443 34556667788995 888777
Q ss_pred cccCccchhHHHHHHHHHhhcCCCCccccCCC
Q 010734 355 HAHGGKGAVDLGIAVQRACENVTQPLKFLYPL 386 (502)
Q Consensus 355 wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~ 386 (502)
+..-.. ..+-+..+++.+. +.++.++||.
T Consensus 163 ~~~~~~-~~~~~~~l~~~~~--~~~vg~~~D~ 191 (301)
T 3cny_A 163 MGTGIQ-TKEETDRLMANTD--PKLVGLLYDT 191 (301)
T ss_dssp TTSSSC-SHHHHHHHHHTSC--TTTCEEEEEH
T ss_pred CCcccC-CHHHHHHHHHhCC--ccceeEEech
Confidence 532222 2333445555543 2347776654
No 157
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=48.10 E-value=14 Score=36.89 Aligned_cols=59 Identities=7% Similarity=-0.065 Sum_probs=33.2
Q ss_pred cCCcEEEEecCCCCCCHHHHHH----HHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 315 YGANVVVAVNMFATDSKAELNA----VRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~Ei~~----v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
-++|+|+++|+-..-++.|+.. +.+++++.|+.-+.+|..-.+|.+.-.+|++.+.+.+
T Consensus 173 ~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~~e~~~~l~~~i~~~i 235 (361)
T 2qag_A 173 NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKEQTRLLKASI 235 (361)
T ss_dssp S-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC---------CHHHHHHHHHTC
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCcchhHHHHHHHHHhcC
Confidence 5799999999998888888854 5556666677523333233334455566677666543
No 158
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=47.72 E-value=1.3e+02 Score=25.41 Aligned_cols=107 Identities=11% Similarity=0.107 Sum_probs=56.3
Q ss_pred chHHHHHHHHHhcCCCCeEEeeccccccc---cchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhc
Q 010734 214 SSIVADKIALKLVGPGGFVVTEAGFGADI---GAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAY 290 (502)
Q Consensus 214 nSviAtk~alkla~~~dyvVTEAGFgaDl---GaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l 290 (502)
.+.++.++.-+-. ++.|.-.|++-+- +.+++-.. ....+||.|||-.-.-=+ +
T Consensus 25 ~~~l~~~l~~~~~---~~~v~n~g~~G~~~~~~~~~~~~~---~~~~~pd~vvi~~G~ND~------------------~ 80 (185)
T 3hp4_A 25 VKLLQDKYDAEQS---DIVLINASISGETSGGALRRLDAL---LEQYEPTHVLIELGANDG------------------L 80 (185)
T ss_dssp HHHHHHHHHHTTC---CEEEEECCCTTCCHHHHHHHHHHH---HHHHCCSEEEEECCHHHH------------------H
T ss_pred HHHHHHHHHhcCC---cEEEEECCcCCccHHHHHHHHHHH---HhhcCCCEEEEEeecccC------------------C
Confidence 4555555554422 6777777775442 22333221 112479988774321111 1
Q ss_pred ccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCC----CCCHHH-HHHHHHHHHHcCCC
Q 010734 291 LNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFA----TDSKAE-LNAVRNAAMAAGAF 347 (502)
Q Consensus 291 ~~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAINrF~----tDT~~E-i~~v~~~c~~~Gv~ 347 (502)
...+.+..+ .||++-|+.+++.|.++|+.--..| .+..++ -+.+++.|++.|+.
T Consensus 81 ~~~~~~~~~---~~~~~~i~~~~~~~~~vvl~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~ 139 (185)
T 3hp4_A 81 RGFPVKKMQ---TNLTALVKKSQAANAMTALMEIYIPPNYGPRYSKMFTSSFTQISEDTNAH 139 (185)
T ss_dssp TTCCHHHHH---HHHHHHHHHHHHTTCEEEEECCCCCSTTCHHHHHHHHHHHHHHHHHHCCE
T ss_pred CCcCHHHHH---HHHHHHHHHHHHcCCeEEEEeCCCCCcccHHHHHHHHHHHHHHHHHcCCE
Confidence 112334444 4677778888888877765421122 222223 35668889999884
No 159
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=46.73 E-value=65 Score=31.74 Aligned_cols=94 Identities=19% Similarity=0.182 Sum_probs=62.9
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHH-------HHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCC
Q 010734 305 LARHIANTKAYGANVVVAVNMFATDSKAELNAV-------RNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVT 377 (502)
Q Consensus 305 L~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v-------~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~ 377 (502)
|++-|+..++|||+| |+..|-.|+.+. .++|+++|...+.+|+.+-+=. -.++.+.+-.+.+.
T Consensus 57 l~eki~l~~~~gV~v------~~GGTl~E~~~~qg~~~~yl~~~k~lGf~~iEiS~G~i~l~--~~~~~~~I~~~~~~-- 126 (251)
T 1qwg_A 57 VKEKINYYKDWGIKV------YPGGTLFEYAYSKGKFDEFLNECEKLGFEAVEISDGSSDIS--LEERNNAIKRAKDN-- 126 (251)
T ss_dssp HHHHHHHHHTTTCEE------EECHHHHHHHHHTTCHHHHHHHHHHHTCCEEEECCSSSCCC--HHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHcCCeE------ECCcHHHHHHHHcCcHHHHHHHHHHcCCCEEEECCCcccCC--HHHHHHHHHHHHHC--
Confidence 677788899999988 467776666554 7789999998777887665532 23344444444332
Q ss_pred CCccccC---------CCCCCHHHHHHHHHH--HhCCCceeeC
Q 010734 378 QPLKFLY---------PLDVSIKEKIDTIAR--SYGASGVEYS 409 (502)
Q Consensus 378 ~~fk~LY---------~~~~sI~eKIe~IA~--IYGA~~V~fS 409 (502)
.|+.+. +...++.+.|+.+.+ =-||+.|...
T Consensus 127 -G~~v~~EvG~k~~~~~~~~~~~~~I~~~~~~LeAGA~~ViiE 168 (251)
T 1qwg_A 127 -GFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLDAGADYVIIE 168 (251)
T ss_dssp -TCEEEEEECCSSHHHHTTCCHHHHHHHHHHHHHHTCSEEEEC
T ss_pred -CCEEeeeccccCCcccCCCCHHHHHHHHHHHHHCCCcEEEEe
Confidence 255554 234578888888888 6788877643
No 160
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=46.67 E-value=38 Score=28.77 Aligned_cols=58 Identities=14% Similarity=0.008 Sum_probs=36.5
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHH-----HcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 315 YGANVVVAVNMFATDSKAELNAVRNAAM-----AAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~Ei~~v~~~c~-----~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
.++|+|+++|+-.-..+.+.+.+.+... ..++ .+-+.=++-|+|-.+|-+.+.+.+.+
T Consensus 118 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 118 AGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHW---RIQGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp TTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE---EEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCce---EEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 5899999999975433333333333322 1233 23334466789999999998888754
No 161
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=46.53 E-value=36 Score=30.91 Aligned_cols=60 Identities=10% Similarity=0.031 Sum_probs=37.0
Q ss_pred cCCcEEEEecCCCCCCHHHHH--------HHHHHHHHcCCCeEEEcCcccc---CccchhHHHHHHHHHhhc
Q 010734 315 YGANVVVAVNMFATDSKAELN--------AVRNAAMAAGAFDAVVCSHHAH---GGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~Ei~--------~v~~~c~~~Gv~~~~vs~~wak---GGeGa~eLA~~Vv~a~e~ 375 (502)
.+.|+||++|+-..-.+++++ .+++++++.|.+ +...+.-+. .++|-.+|-+.+.+.+.+
T Consensus 144 ~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 144 ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDR-YCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HGGGEEEEEECGGGC------------CHHHHHHHHHHSSS-EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCE-EEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 456999999996543334443 566777777775 444444433 236888888888888765
No 162
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=46.50 E-value=1.9e+02 Score=29.34 Aligned_cols=123 Identities=11% Similarity=0.001 Sum_probs=67.2
Q ss_pred HhhHHHHHHHHhh-cCCcEEEEecCCCCCCHHHHHHHHHHHH---HcCCCeEEEcCc---cccCccc---hhHHHHHHHH
Q 010734 302 CVNLARHIANTKA-YGANVVVAVNMFATDSKAELNAVRNAAM---AAGAFDAVVCSH---HAHGGKG---AVDLGIAVQR 371 (502)
Q Consensus 302 ~~NL~kHIeNi~~-fGvPvVVAINrF~tDT~~Ei~~v~~~c~---~~Gv~~~~vs~~---wakGGeG---a~eLA~~Vv~ 371 (502)
+..+.+++..+++ .+.|++|-|+- .+.+|.....+.++ +.|+. +..-+. -.+||.. ..++..++++
T Consensus 111 ~~~~~~~l~~~~~~~~~pvivsI~G---~~~~d~~~~a~~l~~~~~~g~d-~ielNisCPn~~gg~~l~~~~e~~~~il~ 186 (354)
T 4ef8_A 111 FDFYLAYAAEQHDYGKKPLFLSMSG---LSMRENVEMCKRLAAVATEKGV-ILELNLSCPNVPGKPQVAYDFDAMRQCLT 186 (354)
T ss_dssp HHHHHHHHHHTCCTTTCCEEEEECC---SSHHHHHHHHHHHHHHHHHHCC-EEEEECSSCCSTTSCCGGGSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCcEEEEecc---CCHHHHHHHHHHHhhhhhcCCC-EEEEeCCCCCCCCchhhccCHHHHHHHHH
Confidence 3344445555544 47888777643 35677766666665 45664 433222 2355532 1356666666
Q ss_pred HhhcCCC---CccccCCCCCCHHHHHHHHHH-H--hC-CCcee----------------------------eC-----HH
Q 010734 372 ACENVTQ---PLKFLYPLDVSIKEKIDTIAR-S--YG-ASGVE----------------------------YS-----EE 411 (502)
Q Consensus 372 a~e~~~~---~fk~LY~~~~sI~eKIe~IA~-I--YG-A~~V~----------------------------fS-----~~ 411 (502)
++.+..+ ..|.- .+.++. .+..+|. . +| ++.|. || |.
T Consensus 187 av~~~~~~PV~vKi~--p~~d~~-~~~~~a~~~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~ 263 (354)
T 4ef8_A 187 AVSEVYPHSFGVKMP--PYFDFA-HFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPT 263 (354)
T ss_dssp HHHHHCCSCEEEEEC--CCCSHH-HHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHH
T ss_pred HHHHhhCCCeEEEec--CCCCHH-HHHHHHHHHHhCCCccEEEEecccCcceeeeccCCccccccccccCCCCCCCCchH
Confidence 6653211 12322 223433 3566666 3 44 66554 22 46
Q ss_pred HHHHHHHHHHCCCCCCCeeEe
Q 010734 412 AEKQIEMYTGQGFSGLPICMA 432 (502)
Q Consensus 412 A~kqLk~ie~~Gf~~LPVCmA 432 (502)
+.+.++++.+. .+++||+..
T Consensus 264 a~~~i~~v~~~-~~~ipII~~ 283 (354)
T 4ef8_A 264 ALANINAFYRR-CPGKLIFGC 283 (354)
T ss_dssp HHHHHHHHHHH-CTTSEEEEE
T ss_pred HHHHHHHHHHh-CCCCCEEEE
Confidence 67778888877 668898853
No 163
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=46.06 E-value=1.5e+02 Score=27.83 Aligned_cols=118 Identities=14% Similarity=0.051 Sum_probs=73.2
Q ss_pred HHHHhhcCCcEEEEe-------------cCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 309 IANTKAYGANVVVAV-------------NMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 309 IeNi~~fGvPvVVAI-------------NrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
.+.++++++|+|..- -++..|...+...+.++..+.|.+++++-. ....-+.+.++.+.+++++
T Consensus 89 ~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~---~~~~~~~~~~~~~~~~l~~ 165 (358)
T 3hut_A 89 GSIYGKEGMPQLSPTAAHPDYIKISPWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIG---VTTDWGLSSAQAFRKAFEL 165 (358)
T ss_dssp HHHHHHHTCCEEESSCCCGGGTTSCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEE---ESSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCcEEecCCCCcccccCCCeEEEecCChHHHHHHHHHHHHHcCCCEEEEEe---cCcHHHHHHHHHHHHHHHH
Confidence 445667899998751 124456677888888998888998877653 3344556778888877765
Q ss_pred CCCCc--cccCCC-CCCHHHHHHHHHHHhCCCceee---CHHHHHHHHHHHHCCCCCCCeeE
Q 010734 376 VTQPL--KFLYPL-DVSIKEKIDTIARSYGASGVEY---SEEAEKQIEMYTGQGFSGLPICM 431 (502)
Q Consensus 376 ~~~~f--k~LY~~-~~sI~eKIe~IA~IYGA~~V~f---S~~A~kqLk~ie~~Gf~~LPVCm 431 (502)
..-.+ ...|+. ..+...-++.+.. -+.+-|.+ .+.|..-++++.++|+ +.|+..
T Consensus 166 ~g~~v~~~~~~~~~~~~~~~~~~~l~~-~~~d~i~~~~~~~~a~~~~~~~~~~g~-~~p~~~ 225 (358)
T 3hut_A 166 RGGAVVVNEEVPPGNRRFDDVIDEIED-EAPQAIYLAMAYEDAAPFLRALRARGS-ALPVYG 225 (358)
T ss_dssp TTCEEEEEEEECTTCCCCHHHHHHHHH-HCCSEEEEESCHHHHHHHHHHHHHTTC-CCCEEE
T ss_pred cCCEEEEEEecCCCCccHHHHHHHHHh-cCCCEEEEccCchHHHHHHHHHHHcCC-CCcEEe
Confidence 22111 112332 3445554444433 23443332 2478888899999999 578753
No 164
>4ad1_A Glycosyl hydrolase family 71; glycoside hydrolase GH99, CAZY, enzyme-carbohydra interaction, mannose glycosidase inhibition; 1.90A {Bacteroides xylanisolvens} PDB: 4ad2_A* 4ad3_A* 4ad4_A* 4ad5_A*
Probab=45.40 E-value=36 Score=34.84 Aligned_cols=68 Identities=10% Similarity=0.086 Sum_probs=48.0
Q ss_pred hhHHHHHHHHhhcCCcEEEEecCCCCCCH---HHHHHHHHHHHHcCCCeEEEcC-ccccCccchhHHHHHHHHHhh
Q 010734 303 VNLARHIANTKAYGANVVVAVNMFATDSK---AELNAVRNAAMAAGAFDAVVCS-HHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 303 ~NL~kHIeNi~~fGvPvVVAINrF~tDT~---~Ei~~v~~~c~~~Gv~~~~vs~-~wakGGeGa~eLA~~Vv~a~e 374 (502)
.-+++|++-+|.+||-. +|+|.|..|.. .-++.+.+.+++.|.. +..+- .|. |.....+.+.|...++
T Consensus 104 ~v~~~h~~~Ak~aGIDg-f~l~w~~~~~~~d~~~l~~~l~aA~~~~~k-~~f~~~~~~--~~~~~~~~~di~~li~ 175 (380)
T 4ad1_A 104 NILTKHMDMFVMARTGV-LALTWWNEQDETEAKRIGLILDAADKKKIK-VCFHLEPYP--SRNVQNLRENIVKLIT 175 (380)
T ss_dssp HHHHHHHHHHHHHTEEE-EEEEECCCCSHHHHHHHHHHHHHHHHTTCE-EEEEECCCT--TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCE-EEEEecCCCCcccHHHHHHHHHHHHHcCCe-EEEEECCCC--CCChHHHHHHHHHHHH
Confidence 35789999999999986 46889987744 4477788888888884 65553 342 3444566666666654
No 165
>1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, unknown function; HET: MSE; 2.95A {Bacillus subtilis} SCOP: c.77.1.4
Probab=45.33 E-value=4.7 Score=40.78 Aligned_cols=26 Identities=27% Similarity=0.133 Sum_probs=23.2
Q ss_pred Eccccc-------chhcccCchHHHHHHHHHhc
Q 010734 201 VHAGPF-------ANIAHGNSSIVADKIALKLV 226 (502)
Q Consensus 201 vHgGPF-------ANIAhG~nSviAtk~alkla 226 (502)
-||||| .++.||.+|.-+-.-|+++|
T Consensus 280 ~~gga~llG~~~pvi~~~g~a~~~~i~~ai~~A 312 (345)
T 1vi1_A 280 NYGGASLFGLKAPVIKAHGSSDSNAVFRAIRQA 312 (345)
T ss_dssp GSCCEEEETBSSCEEECCTTCCHHHHHHHHHHH
T ss_pred ccccceeecCCccEEEeCCCCCHHHHHHHHHHH
Confidence 699999 89999999998888888776
No 166
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=44.97 E-value=31 Score=30.79 Aligned_cols=56 Identities=14% Similarity=0.104 Sum_probs=36.8
Q ss_pred CCcEEEEecCCCCCCHH--------------HHHHHHHHHHHcCCCeEEEcCcccc-CccchhHHHHHHHHHh
Q 010734 316 GANVVVAVNMFATDSKA--------------ELNAVRNAAMAAGAFDAVVCSHHAH-GGKGAVDLGIAVQRAC 373 (502)
Q Consensus 316 GvPvVVAINrF~tDT~~--------------Ei~~v~~~c~~~Gv~~~~vs~~wak-GGeGa~eLA~~Vv~a~ 373 (502)
++|+|++.|+..-..+. ..+...+++++.|...+. +.=++ +|+|-.+|-+.+++.+
T Consensus 132 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 132 NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYI--ECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE--ECCTTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEE--EeeeccCCcCHHHHHHHHHHHH
Confidence 79999999996543211 123466778877742343 33455 7888888888777665
No 167
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=44.92 E-value=92 Score=30.40 Aligned_cols=92 Identities=17% Similarity=0.105 Sum_probs=52.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCcc-------------ccCc-cc------hhHHHHHHHHHhhc
Q 010734 316 GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHH-------------AHGG-KG------AVDLGIAVQRACEN 375 (502)
Q Consensus 316 GvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~w-------------akGG-eG------a~eLA~~Vv~a~e~ 375 (502)
++|++|=++- .-|++|+..+.+.+++.|+..+.+++++ ..|| .| +.+++++|.+.+..
T Consensus 211 ~~Pv~vKi~~--~~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~~~ 288 (336)
T 1f76_A 211 YVPIAVKIAP--DLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNG 288 (336)
T ss_dssp CCCEEEECCS--CCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTT
T ss_pred cCceEEEecC--CCCHHHHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHhCC
Confidence 6899997652 3466788888889999999766666653 2334 23 23555566555421
Q ss_pred CCCCccccCCCC-CCHHHHHHHHHHHhCCCceeeCHHHHH
Q 010734 376 VTQPLKFLYPLD-VSIKEKIDTIARSYGASGVEYSEEAEK 414 (502)
Q Consensus 376 ~~~~fk~LY~~~-~sI~eKIe~IA~IYGA~~V~fS~~A~k 414 (502)
++..+-.-. .+.++=.+.|+ .||+.|........
T Consensus 289 ---~ipVi~~GGI~~~~da~~~l~--~GAd~V~igr~~l~ 323 (336)
T 1f76_A 289 ---RLPIIGVGGIDSVIAAREKIA--AGASLVQIYSGFIF 323 (336)
T ss_dssp ---SSCEEEESSCCSHHHHHHHHH--HTCSEEEESHHHHH
T ss_pred ---CCCEEEECCCCCHHHHHHHHH--CCCCEEEeeHHHHh
Confidence 122222211 23333333333 58888876655543
No 168
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=44.77 E-value=27 Score=32.04 Aligned_cols=74 Identities=11% Similarity=0.023 Sum_probs=48.0
Q ss_pred hhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccc
Q 010734 303 VNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKF 382 (502)
Q Consensus 303 ~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~ 382 (502)
..+++.|+..+.+|.+.||.- +. .+.++.+.+.|++.|+. +++-++...---.. .+.+.+.++..+.++.+
T Consensus 91 ~~~~~~i~~A~~lGa~~v~~~---~~--~~~~~~l~~~a~~~gv~-l~~En~~~~~~~~~---~~~~~~ll~~~~~~~g~ 161 (262)
T 3p6l_A 91 SDWEKMFKFAKAMDLEFITCE---PA--LSDWDLVEKLSKQYNIK-ISVHNHPQPSDYWK---PENLLKAISGRSQSLGS 161 (262)
T ss_dssp THHHHHHHHHHHTTCSEEEEC---CC--GGGHHHHHHHHHHHTCE-EEEECCSSSSSSSS---HHHHHHHHTTSCTTEEE
T ss_pred HHHHHHHHHHHHcCCCEEEec---CC--HHHHHHHHHHHHHhCCE-EEEEeCCCccccCC---HHHHHHHHHhCCCceEE
Confidence 357889999999999999873 32 46788889999999995 77777743110011 12333444322345666
Q ss_pred cCC
Q 010734 383 LYP 385 (502)
Q Consensus 383 LY~ 385 (502)
.||
T Consensus 162 ~~D 164 (262)
T 3p6l_A 162 CSD 164 (262)
T ss_dssp EEE
T ss_pred Eec
Confidence 665
No 169
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=43.89 E-value=39 Score=30.77 Aligned_cols=62 Identities=18% Similarity=0.053 Sum_probs=38.8
Q ss_pred HhhcCCcEEEEecCCCCCCHHHHHHHHHHH----------------------------HHcCCC-eEEEcCccccCccch
Q 010734 312 TKAYGANVVVAVNMFATDSKAELNAVRNAA----------------------------MAAGAF-DAVVCSHHAHGGKGA 362 (502)
Q Consensus 312 i~~fGvPvVVAINrF~tDT~~Ei~~v~~~c----------------------------~~~Gv~-~~~vs~~wakGGeGa 362 (502)
....++|+++++|+....+..+++.+.++. ++.+.. .+... =++-|+|-
T Consensus 167 ~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--SA~~~~gi 244 (262)
T 1yrb_A 167 DLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYL--SAKTREGF 244 (262)
T ss_dssp HHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEEC--CTTTCTTH
T ss_pred hcccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEE--EecCcccH
Confidence 345689999999999877776665554432 222221 12222 26777888
Q ss_pred hHHHHHHHHHhhc
Q 010734 363 VDLGIAVQRACEN 375 (502)
Q Consensus 363 ~eLA~~Vv~a~e~ 375 (502)
.+|-+.+.+.+..
T Consensus 245 ~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 245 EDLETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 8888777776653
No 170
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=43.14 E-value=2.6e+02 Score=27.72 Aligned_cols=157 Identities=15% Similarity=0.184 Sum_probs=90.9
Q ss_pred cchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcEEEE
Q 010734 243 GAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVA 322 (502)
Q Consensus 243 GaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVA 322 (502)
|.|++++---|...++||.+-| | |..|... .+. ...+-.+|. +.+|+++|.=
T Consensus 37 ~~~~l~~~~~~l~~l~p~fvsV--T-----~gagg~~------------r~~-------t~~~a~~i~--~~~g~~~v~H 88 (304)
T 3fst_A 37 MEQTLWNSIDRLSSLKPKFVSV--T-----YGANSGE------------RDR-------THSIIKGIK--DRTGLEAAPH 88 (304)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEE--C-----CCTTSSC------------HHH-------HHHHHHHHH--HHHCCCEEEE
T ss_pred HHHHHHHHHHHHhcCCCCEEEE--e-----eCCCCcc------------hhH-------HHHHHHHHH--HHhCCCeeEE
Confidence 5577777777888899998433 4 3222210 111 112333332 2589999986
Q ss_pred ecCCCCCCHHHHHHHHHHHHHcCCCeEEE-cCccccCccchhHHHHHHHHHhhcCCCCcc---ccCC----CCCCHHHHH
Q 010734 323 VNMFATDSKAELNAVRNAAMAAGAFDAVV-CSHHAHGGKGAVDLGIAVQRACENVTQPLK---FLYP----LDVSIKEKI 394 (502)
Q Consensus 323 INrF~tDT~~Ei~~v~~~c~~~Gv~~~~v-s~~wakGGeGa~eLA~~Vv~a~e~~~~~fk---~LY~----~~~sI~eKI 394 (502)
+--- .-|.+|++.+...+.++|++.+.. .--..+||+|.-.=|...++.+.+. ..|. -.|+ ...+.+.-+
T Consensus 89 ltc~-~~~~~~l~~~L~~~~~~GI~nILaLrGDpp~~~~~~~~~A~dLv~~ir~~-~~f~IgvA~yPE~Hp~a~~~~~d~ 166 (304)
T 3fst_A 89 LTCI-DATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEV-ADFDISVAAYPEVHPEAKSAQADL 166 (304)
T ss_dssp EEST-TSCHHHHHHHHHHHHHTTCCEEEEECCCCC------CCCHHHHHHHHHHH-CCCEEEEEECTTCCTTCSCHHHHH
T ss_pred eecC-CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCCCCCCCHHHHHHHHHHc-CCCeEEEEeCCCcCCCCCCHHHHH
Confidence 6553 358899999999999999976532 2334455555332244444444321 2342 3453 345677667
Q ss_pred HHHHH--HhCCCcee----eCHHHHHHH-HHHHHCCCCCCCee
Q 010734 395 DTIAR--SYGASGVE----YSEEAEKQI-EMYTGQGFSGLPIC 430 (502)
Q Consensus 395 e~IA~--IYGA~~V~----fS~~A~kqL-k~ie~~Gf~~LPVC 430 (502)
+.+.+ --||+-+. |+.+.-.++ +++++.|.+ .||-
T Consensus 167 ~~Lk~KvdAGAdf~iTQ~ffD~~~~~~f~~~~r~~Gi~-vPIi 208 (304)
T 3fst_A 167 LNLKRKVDAGANRAITQFFFDVESYLRFRDRCVSAGID-VEII 208 (304)
T ss_dssp HHHHHHHHHTCCEEEECCCSCHHHHHHHHHHHHHTTCC-SCEE
T ss_pred HHHHHHHHcCCCEEEeCccCCHHHHHHHHHHHHhcCCC-CcEE
Confidence 77776 58998665 887776554 466778874 6764
No 171
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=43.09 E-value=1.7e+02 Score=31.58 Aligned_cols=66 Identities=15% Similarity=0.138 Sum_probs=37.9
Q ss_pred HHHHhhcCCcEEEEecCCCCCC-----------------HH----H----HHHHHHHHHHcCCC------------eEEE
Q 010734 309 IANTKAYGANVVVAVNMFATDS-----------------KA----E----LNAVRNAAMAAGAF------------DAVV 351 (502)
Q Consensus 309 IeNi~~fGvPvVVAINrF~tDT-----------------~~----E----i~~v~~~c~~~Gv~------------~~~v 351 (502)
++.++.+++|+||++|+-.-.. .+ + +..+.+...+.|.. .+.+
T Consensus 115 l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpv 194 (594)
T 1g7s_A 115 LNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSI 194 (594)
T ss_dssp HHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEE
T ss_pred HHHHHHcCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceE
Confidence 3345679999999999854311 01 1 12233344444541 1223
Q ss_pred cCccccCccchhHHHHHHHHHhh
Q 010734 352 CSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 352 s~~wakGGeGa~eLA~~Vv~a~e 374 (502)
...=+.=|+|-.+|-+.++..+.
T Consensus 195 v~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 195 IPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEeccCCCCchhHHHHHHhhcc
Confidence 33446668888888888777664
No 172
>3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A
Probab=43.07 E-value=79 Score=29.75 Aligned_cols=93 Identities=15% Similarity=0.138 Sum_probs=59.8
Q ss_pred cccc-HHHHHHHHhhHHHHHHHHhhcCCcEEEEe-cCCCC-CCHHHHHHHHHHHHH-----cCCCeEEEcCccccCcc-c
Q 010734 291 LNEN-VALVEAGCVNLARHIANTKAYGANVVVAV-NMFAT-DSKAELNAVRNAAMA-----AGAFDAVVCSHHAHGGK-G 361 (502)
Q Consensus 291 ~~eN-l~AL~~G~~NL~kHIeNi~~fGvPvVVAI-NrF~t-DT~~Ei~~v~~~c~~-----~Gv~~~~vs~~wakGGe-G 361 (502)
..++ .+..++.+..++++|+-.+.+|.+.||.- ..... +.++.++.+.+..++ .|+. .++-++...+.. +
T Consensus 81 ~s~d~~~~r~~~~~~~~~~i~~A~~lGa~~vv~h~g~~~~~~~~~~~~~~~~~l~~l~~~a~gv~-l~lEn~~~~~~~~~ 159 (303)
T 3aal_A 81 GNTTNLDTFSLGVDFLRAEIERTEAIGAKQLVLHPGAHVGAGVEAGLRQIIRGLNEVLTREQNVQ-IALETMAGKGSECG 159 (303)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHHHTCSEEEECCEECTTSCHHHHHHHHHHHHHHHCCSSCSCE-EEEECCCCCTTEEC
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHHHHHHhCCCCE-EEEecCCCCCCccC
Confidence 3456 67788999999999999999999999862 22222 455666666555444 3784 777777544432 2
Q ss_pred -hhHHHHHHHHHhhcCCCCccccCC
Q 010734 362 -AVDLGIAVQRACENVTQPLKFLYP 385 (502)
Q Consensus 362 -a~eLA~~Vv~a~e~~~~~fk~LY~ 385 (502)
..+-+..+++.+.. +.++...+|
T Consensus 160 ~t~~~~~~li~~v~~-~~~vg~~lD 183 (303)
T 3aal_A 160 RTFEELAYIIDGVAY-NDKLSVCFD 183 (303)
T ss_dssp SSHHHHHHHHHHCTT-GGGEEEEEE
T ss_pred CCHHHHHHHHHhcCC-CCCEEEEEE
Confidence 44555567776642 124666554
No 173
>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}
Probab=42.30 E-value=1.3e+02 Score=28.32 Aligned_cols=100 Identities=9% Similarity=0.040 Sum_probs=60.0
Q ss_pred HHHHHHhhHHHHHHHHhhcCCcEEEEec-C--------CCCC----CHH-------HHHHHHHHHHHcCCCeEEEcCccc
Q 010734 297 LVEAGCVNLARHIANTKAYGANVVVAVN-M--------FATD----SKA-------ELNAVRNAAMAAGAFDAVVCSHHA 356 (502)
Q Consensus 297 AL~~G~~NL~kHIeNi~~fGvPvVVAIN-r--------F~tD----T~~-------Ei~~v~~~c~~~Gv~~~~vs~~wa 356 (502)
.-++.+..+++.|+..+.+|.+.||..- . |+.. +++ -++.+.+.|++.|+. +++-+++.
T Consensus 105 ~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lEn~~~ 183 (340)
T 2zds_A 105 VRQRAAAEIKDTARAAARLGVDTVIGFTGSAIWHLVAMFPPAPESMIERGYQDFADRWNPILDVFDAEGVR-FAHEVHPS 183 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEEEECCCCSSGGGTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCE-EEEECCTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEecCCcCcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHcCCE-EEEEcCCC
Confidence 3466788999999999999999998742 1 1111 222 233455567778995 88877765
Q ss_pred cCccchhHHHHHHHHHhhcCCCCccccCCC------CCCHHHHHHHHHH
Q 010734 357 HGGKGAVDLGIAVQRACENVTQPLKFLYPL------DVSIKEKIDTIAR 399 (502)
Q Consensus 357 kGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~------~~sI~eKIe~IA~ 399 (502)
.... ..+-+..+++.+.. ..++...||. ..++.+=|++...
T Consensus 184 ~~~~-~~~~~~~ll~~v~~-~~~vg~~~D~~H~~~~g~d~~~~l~~~~~ 230 (340)
T 2zds_A 184 EIAY-DYWTTHRALEAVGH-RPAFGLNFDPSHFVWQDLDPVGFLWDFRD 230 (340)
T ss_dssp SSCC-SHHHHHHHHHHTTT-CTTEEEEECCHHHHHTTCCHHHHHHHTGG
T ss_pred cccC-CHHHHHHHHHhcCC-CCCeeEEEchhhHHHhCCCHHHHHHHHHh
Confidence 4433 23334556666541 2347777664 2345555555443
No 174
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=42.30 E-value=79 Score=26.29 Aligned_cols=64 Identities=20% Similarity=0.252 Sum_probs=39.9
Q ss_pred HHHHhhcCCcEEEEecCCCCC--CHHHHHHHHHHHHHcCCC------eEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 309 IANTKAYGANVVVAVNMFATD--SKAELNAVRNAAMAAGAF------DAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 309 IeNi~~fGvPvVVAINrF~tD--T~~Ei~~v~~~c~~~Gv~------~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
++.++..++|+++++|+..-. +.+++ .+..++.+.. .+.+-+.=++=|+|-.+|-+.+++.++.
T Consensus 100 l~~~~~~~~p~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 100 INHAKAANVPIIVAINKMDKPEANPDRV---MQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp HHHHGGGSCCEEEEEETTTSSCSCHHHH---HHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEEECccCCcCCHHHH---HHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhh
Confidence 455667899999999996543 23333 2332322210 0222333467789999999999888875
No 175
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=42.27 E-value=45 Score=33.48 Aligned_cols=67 Identities=16% Similarity=0.150 Sum_probs=43.1
Q ss_pred HHHHHHHHhhcCC-cEEEEecCCCCCCHHH----HHHHHHHHHH---cCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 305 LARHIANTKAYGA-NVVVAVNMFATDSKAE----LNAVRNAAMA---AGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 305 L~kHIeNi~~fGv-PvVVAINrF~tDT~~E----i~~v~~~c~~---~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
...|+..++.+|+ |+||++|+-.--++++ .+.+++++++ .++. +..+.. .=|+|-.+|-+.+.+.+.
T Consensus 125 t~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~-~i~vSA--~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 125 TREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAP-IIPISA--LHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCC-EEECBT--TTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCe-EEEeeC--CCCCCHHHHHHHHHHhCC
Confidence 3446666667787 6889999976655544 3455566554 3453 444444 447888888888877664
No 176
>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1
Probab=41.71 E-value=26 Score=33.68 Aligned_cols=73 Identities=16% Similarity=0.099 Sum_probs=49.2
Q ss_pred CCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHH
Q 010734 259 PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVR 338 (502)
Q Consensus 259 P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~ 338 (502)
-|.+-+|.-+.+||-. . .+.-.+++.++.+-+ ...++||++.--.. |++|+....
T Consensus 80 AdEID~Vinig~~~~g--~----------~~~v~~ei~~v~~a~----------~~~~lKvIlEt~~L---t~eei~~a~ 134 (226)
T 1vcv_A 80 ADEIDVVAPIGLVKSR--R----------WAEVRRDLISVVGAA----------GGRVVKVITEEPYL---RDEERYTLY 134 (226)
T ss_dssp CSEEEEECCHHHHHTT--C----------HHHHHHHHHHHHHHT----------TTSEEEEECCGGGC---CHHHHHHHH
T ss_pred CCEEEEecchhhhcCC--C----------HHHHHHHHHHHHHHH----------cCCCceEEEeccCC---CHHHHHHHH
Confidence 5778888888888732 1 222233444444333 23467777654444 589999999
Q ss_pred HHHHHcCCCeEEEcCccc
Q 010734 339 NAAMAAGAFDAVVCSHHA 356 (502)
Q Consensus 339 ~~c~~~Gv~~~~vs~~wa 356 (502)
+.|.++|+..+-.|+.|.
T Consensus 135 ~ia~eaGADfVKTSTGf~ 152 (226)
T 1vcv_A 135 DIIAEAGAHFIKSSTGFA 152 (226)
T ss_dssp HHHHHHTCSEEECCCSCC
T ss_pred HHHHHcCCCEEEeCCCCC
Confidence 999999998777788898
No 177
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=41.04 E-value=1e+02 Score=28.77 Aligned_cols=102 Identities=14% Similarity=0.123 Sum_probs=54.5
Q ss_pred HHHHhh-cCCcEEEEe---cCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccC
Q 010734 309 IANTKA-YGANVVVAV---NMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLY 384 (502)
Q Consensus 309 IeNi~~-fGvPvVVAI---NrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY 384 (502)
|+.+++ .+ |++|-+ .-+- |++|+..+.+.|+++|+..+..++.|..||. ..+..+.+.+.+.. +-.+.-.=
T Consensus 108 i~~v~~a~~-pv~vKvi~e~~~l--~~~~~~~~a~~a~eaGad~I~tstg~~~gga-~~~~i~~v~~~v~~-~ipVia~G 182 (225)
T 1mzh_A 108 LKEIFRETP-SAVHKVIVETPYL--NEEEIKKAVEICIEAGADFIKTSTGFAPRGT-TLEEVRLIKSSAKG-RIKVKASG 182 (225)
T ss_dssp HHHHHHTCT-TSEEEEECCGGGC--CHHHHHHHHHHHHHHTCSEEECCCSCSSSCC-CHHHHHHHHHHHTT-SSEEEEES
T ss_pred HHHHHHHhc-CceEEEEEeCCCC--CHHHHHHHHHHHHHhCCCEEEECCCCCCCCC-CHHHHHHHHHHhCC-CCcEEEEC
Confidence 555554 34 777755 3332 5678999999999999975544556655553 44555566665521 11111111
Q ss_pred CCCCCHHHHHHHHHHHhCCC--ceeeCHHHHHHHHH
Q 010734 385 PLDVSIKEKIDTIARSYGAS--GVEYSEEAEKQIEM 418 (502)
Q Consensus 385 ~~~~sI~eKIe~IA~IYGA~--~V~fS~~A~kqLk~ 418 (502)
.. .+.++=.+.| -.||+ ++.......++++.
T Consensus 183 GI-~t~~da~~~l--~aGA~~iG~s~~~~i~~~~~~ 215 (225)
T 1mzh_A 183 GI-RDLETAISMI--EAGADRIGTSSGISIAEEFLK 215 (225)
T ss_dssp SC-CSHHHHHHHH--HTTCSEEEESCHHHHHHHHHH
T ss_pred CC-CCHHHHHHHH--HhCchHHHHccHHHHHHHHHh
Confidence 11 2333333333 36899 55554444444443
No 178
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=40.50 E-value=1e+02 Score=29.67 Aligned_cols=103 Identities=13% Similarity=0.088 Sum_probs=66.9
Q ss_pred HHhhHHHHHHHHhhcCCcEEEEecC-C-----CCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 301 GCVNLARHIANTKAYGANVVVAVNM-F-----ATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 301 G~~NL~kHIeNi~~fGvPvVVAINr-F-----~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
-+++..+.|+.++++|++|.+.|.. | ..-+++++..+.+.+.+.|+..+.+++.. |. +.-+....+++.+.
T Consensus 118 ~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~Dt~--G~-~~P~~~~~lv~~l~ 194 (295)
T 1ydn_A 118 SIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVSLGDTI--GR-GTPDTVAAMLDAVL 194 (295)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCSEEEEEETT--SC-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEecCCC--CC-cCHHHHHHHHHHHH
Confidence 3466777789999999999877764 4 22356777777777779999988888743 33 55666666666665
Q ss_pred cCCC----CccccCCCCCCHHHHHHHHHH-HhCCCceeeC
Q 010734 375 NVTQ----PLKFLYPLDVSIKEKIDTIAR-SYGASGVEYS 409 (502)
Q Consensus 375 ~~~~----~fk~LY~~~~sI~eKIe~IA~-IYGA~~V~fS 409 (502)
+.-. .++.=.+..+.+.. .++- -.|++.|+-|
T Consensus 195 ~~~~~~~l~~H~Hn~~Gla~an---~l~Ai~aG~~~vd~s 231 (295)
T 1ydn_A 195 AIAPAHSLAGHYHDTGGRALDN---IRVSLEKGLRVFDAS 231 (295)
T ss_dssp TTSCGGGEEEEEBCTTSCHHHH---HHHHHHHTCCEEEEB
T ss_pred HhCCCCeEEEEECCCcchHHHH---HHHHHHhCCCEEEec
Confidence 4211 13333344555553 4555 6788877754
No 179
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=40.27 E-value=44 Score=28.11 Aligned_cols=71 Identities=10% Similarity=-0.024 Sum_probs=38.8
Q ss_pred hHHHHHHHHh----hcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC--eEEEcCccccCccchhHHHHHHHHHhh
Q 010734 304 NLARHIANTK----AYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF--DAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 304 NL~kHIeNi~----~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~--~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
++.+.+..+. ..++|+|+++|+-.-..+.+.+.+.+........ .+.+-+.=++=|+|-.+|-+.+.+.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 103 TASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIK 179 (183)
T ss_dssp HHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 3344444444 4789999999997532222222333332211110 112223336678898888888887764
No 180
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=40.08 E-value=43 Score=33.59 Aligned_cols=71 Identities=21% Similarity=0.129 Sum_probs=42.8
Q ss_pred hHHHHHHHHhhcCCc-EEEEecCCCCC-CHHHH----HHHHHHHHHcCC----CeEEEcCccc-cC------ccc-hhHH
Q 010734 304 NLARHIANTKAYGAN-VVVAVNMFATD-SKAEL----NAVRNAAMAAGA----FDAVVCSHHA-HG------GKG-AVDL 365 (502)
Q Consensus 304 NL~kHIeNi~~fGvP-vVVAINrF~tD-T~~Ei----~~v~~~c~~~Gv----~~~~vs~~wa-kG------GeG-a~eL 365 (502)
....|++.++..|+| +||++|+-.-- .++.+ +.+++++++.|. ..+..+..+. .+ ++| -.+|
T Consensus 106 qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~L 185 (397)
T 1d2e_A 106 QTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKL 185 (397)
T ss_dssp HHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHH
Confidence 345677777889999 68999997643 33322 345667777774 1355544433 11 234 4567
Q ss_pred HHHHHHHhh
Q 010734 366 GIAVQRACE 374 (502)
Q Consensus 366 A~~Vv~a~e 374 (502)
-+.+.+.+.
T Consensus 186 l~~l~~~~p 194 (397)
T 1d2e_A 186 LDAVDTYIP 194 (397)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHhCC
Confidence 777766553
No 181
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=39.90 E-value=1.5e+02 Score=27.71 Aligned_cols=119 Identities=6% Similarity=-0.015 Sum_probs=72.3
Q ss_pred HHHHhhcCCcEEEEe-------------cCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 309 IANTKAYGANVVVAV-------------NMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 309 IeNi~~fGvPvVVAI-------------NrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
.+.++++++|+|..- -++..|...+...+.+++.+.|.+++++-. .+ ..-+.+.++.+.+.+++
T Consensus 89 ~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~--~~-~~~g~~~~~~~~~~l~~ 165 (368)
T 4eyg_A 89 APLATQAKVPEIVMAAGTSIITERSPYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLT--SD-YAPGNDALAFFKERFTA 165 (368)
T ss_dssp HHHHHHHTCCEEESSCCCGGGGGGCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEE--ES-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCceEEeccCCChhhccCCCCEEEecCChHHHHHHHHHHHHHcCCCEEEEEe--cC-chHhHHHHHHHHHHHHH
Confidence 345667899988752 123456677888899999999988776653 22 33445667777777764
Q ss_pred CCCC--ccccCCC-CCCHHHHHHHHHHHhCCCceee---CHHHHHHHHHHHHCCCCC--CCeeE
Q 010734 376 VTQP--LKFLYPL-DVSIKEKIDTIARSYGASGVEY---SEEAEKQIEMYTGQGFSG--LPICM 431 (502)
Q Consensus 376 ~~~~--fk~LY~~-~~sI~eKIe~IA~IYGA~~V~f---S~~A~kqLk~ie~~Gf~~--LPVCm 431 (502)
..-+ ....|+. +.+...-+++|.. -+++-|.+ ...+..-++++.++|+.. +|+..
T Consensus 166 ~g~~v~~~~~~~~~~~d~~~~~~~l~~-~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~~v~~~~ 228 (368)
T 4eyg_A 166 GGGEIVEEIKVPLANPDFAPFLQRMKD-AKPDAMFVFVPAGQGGNFMKQFAERGLDKSGIKVIG 228 (368)
T ss_dssp TTCEEEEEEEECSSSCCCHHHHHHHHH-HCCSEEEEECCTTCHHHHHHHHHHTTGGGTTCEEEE
T ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHh-cCCCEEEEeccchHHHHHHHHHHHcCCCcCCceEEe
Confidence 2111 1222332 2344444444433 24444443 457778888999999864 67654
No 182
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=39.61 E-value=47 Score=27.32 Aligned_cols=57 Identities=11% Similarity=-0.021 Sum_probs=33.1
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHH-----HcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 315 YGANVVVAVNMFATDSKAELNAVRNAAM-----AAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~Ei~~v~~~c~-----~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
.++|+|++.|+-.-..+.+.+.+.+... +.+. .+-+.=++-|+|-.+|-+.+++.+.
T Consensus 100 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 100 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNW---YIQATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp TTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCE---EEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred cCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccE---EEEEcccCCCcCHHHHHHHHHHHHh
Confidence 4899999999975433322222222211 1222 1223336778998888888887764
No 183
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=39.57 E-value=38 Score=29.78 Aligned_cols=57 Identities=11% Similarity=-0.069 Sum_probs=31.7
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHHHcC--------------CCeEEEcCccccCccchhHHHHHHHH
Q 010734 315 YGANVVVAVNMFATDSKAELNAVRNAAMAAG--------------AFDAVVCSHHAHGGKGAVDLGIAVQR 371 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~G--------------v~~~~vs~~wakGGeGa~eLA~~Vv~ 371 (502)
.++|+|++.|+-.-......+.+++++.... ...+.+-+.=++-|+|-.+|-+.+.+
T Consensus 125 ~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 125 ANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 195 (198)
T ss_dssp TTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred CCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999964332111233445544221 11123334446778888777766654
No 184
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=39.30 E-value=58 Score=28.05 Aligned_cols=57 Identities=14% Similarity=-0.074 Sum_probs=37.3
Q ss_pred CCcEEEEecCCCCCCHH--------------HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 316 GANVVVAVNMFATDSKA--------------ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 316 GvPvVVAINrF~tDT~~--------------Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
++|+||+.|+-.-..+. ..+...+++++.|...+.. .=++=|+|-.+|-+.+++.+.
T Consensus 124 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 124 KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE--CSALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE--CCTTTCTTHHHHHHHHHHHHH
T ss_pred CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE--EecCCCCCHHHHHHHHHHHHh
Confidence 89999999996532211 1234566777777633433 335667888888888777664
No 185
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=39.22 E-value=1.1e+02 Score=27.59 Aligned_cols=82 Identities=15% Similarity=0.090 Sum_probs=47.4
Q ss_pred CCCeEEeecccc-ccccchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHH
Q 010734 228 PGGFVVTEAGFG-ADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLA 306 (502)
Q Consensus 228 ~~dyvVTEAGFg-aDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~ 306 (502)
..||||-..+-+ .+......+. ..|.+|+|++-. ...+.. +.
T Consensus 67 ~yD~viiD~p~~~~~~~~~~~l~--------~aD~viiv~~~~----------------------~~~~~~-------~~ 109 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDEDLEALAD--------GCDLLVIPSTPD----------------------ALALDA-------LM 109 (209)
T ss_dssp GCSEEEEEEECCCSSSHHHHHHH--------TSSEEEEEECSS----------------------HHHHHH-------HH
T ss_pred cCCEEEEeCCCCcCcHHHHHHHH--------HCCEEEEEecCC----------------------chhHHH-------HH
Confidence 449999887766 4443333332 357788877621 112222 23
Q ss_pred HHHHHHhhc-CCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCC
Q 010734 307 RHIANTKAY-GANVVVAVNMFATDS-KAELNAVRNAAMAAGAF 347 (502)
Q Consensus 307 kHIeNi~~f-GvPvVVAINrF~tDT-~~Ei~~v~~~c~~~Gv~ 347 (502)
+-++.++++ +.+..|.+|++...+ ..+ +.+.+.+++.|..
T Consensus 110 ~~~~~l~~~~~~~~~vv~N~~~~~~~~~~-~~~~~~l~~~g~~ 151 (209)
T 3cwq_A 110 LTIETLQKLGNNRFRILLTIIPPYPSKDG-DEARQLLTTAGLP 151 (209)
T ss_dssp HHHHHHHHTCSSSEEEEECSBCCTTSCHH-HHHHHHHHHTTCC
T ss_pred HHHHHHHhccCCCEEEEEEecCCccchHH-HHHHHHHHHcCCc
Confidence 333334442 788999999998876 332 3455666667764
No 186
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=39.16 E-value=87 Score=28.29 Aligned_cols=127 Identities=10% Similarity=0.082 Sum_probs=70.8
Q ss_pred HHHHHhhHHHHHHHHhhcCCcEEEEe-cCCCC--CCHH-------HHHHHHHHHHHcCCCeEEEcCccccC--cc--chh
Q 010734 298 VEAGCVNLARHIANTKAYGANVVVAV-NMFAT--DSKA-------ELNAVRNAAMAAGAFDAVVCSHHAHG--GK--GAV 363 (502)
Q Consensus 298 L~~G~~NL~kHIeNi~~fGvPvVVAI-NrF~t--DT~~-------Ei~~v~~~c~~~Gv~~~~vs~~wakG--Ge--Ga~ 363 (502)
-++....+++.|+..+.+|.+.||.- ..++. ++++ -+..+.+.|++.|+. +++-++-..+ +. ...
T Consensus 80 ~~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~~E~~~~~~~~~~~~~~~ 158 (260)
T 1k77_A 80 EHEAHADIDLALEYALALNCEQVHVMAGVVPAGEDAERYRAVFIDNIRYAADRFAPHGKR-ILVEALSPGVKPHYLFSSQ 158 (260)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECCCCBCCTTSCHHHHHHHHHHHHHHHHHHHGGGTCE-EEECCCCTTTSTTBSCCSH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEEeCCccCCCcCccCCH
Confidence 35667889999999999999999873 33332 2232 334555667778995 7776662111 11 223
Q ss_pred HHHHHHHHHhhcCCCCccccCCC------CCCHHHHHHHHHH-HhCCCceeeCH------------HHHHHHHHHHHCCC
Q 010734 364 DLGIAVQRACENVTQPLKFLYPL------DVSIKEKIDTIAR-SYGASGVEYSE------------EAEKQIEMYTGQGF 424 (502)
Q Consensus 364 eLA~~Vv~a~e~~~~~fk~LY~~------~~sI~eKIe~IA~-IYGA~~V~fS~------------~A~kqLk~ie~~Gf 424 (502)
+-+.++++.+. +.++.+.||. ..++.+=|+++.. |.. |-+.+ .-.+-++.+++.||
T Consensus 159 ~~~~~l~~~~~--~~~~g~~~D~~h~~~~~~d~~~~l~~~~~~i~~---vH~~D~~~r~~~G~G~id~~~~~~~L~~~gy 233 (260)
T 1k77_A 159 YQALAIVEEVA--RDNVFIQLDTFHAQKVDGNLTHLIRDYAGKYAH---VQIAGLPDRHEPDDGEINYPWLFRLFDEVGY 233 (260)
T ss_dssp HHHHHHHHHHC--CTTEEEEEEHHHHHHHTCCHHHHHHHTTTSEEE---EEECCTTTCCCSSSSSSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhC--CCCEEEEeeHHHHHhhCCCHHHHHHHhhhheeE---EEECCCCCCCCCCCCccCHHHHHHHHHHcCC
Confidence 33445555553 2346666643 3345555555543 321 11111 13455667777787
Q ss_pred CCCCeeE
Q 010734 425 SGLPICM 431 (502)
Q Consensus 425 ~~LPVCm 431 (502)
+. ||++
T Consensus 234 ~g-~i~~ 239 (260)
T 1k77_A 234 QG-WIGC 239 (260)
T ss_dssp CS-CEEE
T ss_pred Cc-eEEE
Confidence 65 5554
No 187
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=39.12 E-value=53 Score=30.68 Aligned_cols=64 Identities=16% Similarity=0.113 Sum_probs=40.3
Q ss_pred HHHHhhc--CCcEEEEecCCCCCC-HHH-------------HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHH
Q 010734 309 IANTKAY--GANVVVAVNMFATDS-KAE-------------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 372 (502)
Q Consensus 309 IeNi~~f--GvPvVVAINrF~tDT-~~E-------------i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a 372 (502)
++.++.+ ++|+|+++|+..-.. .+. .+...+++++.|...+..+. ++-|+|-.+|-+.+++.
T Consensus 250 ~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S--a~~~~gi~~l~~~l~~~ 327 (332)
T 2wkq_A 250 YPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS--ALTQRGLKTVFDEAIRA 327 (332)
T ss_dssp HHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC--TTTCTTHHHHHHHHHHH
T ss_pred HHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec--CCCCcCHHHHHHHHHHH
Confidence 3444444 899999999864311 111 23456778888863344333 56688888888887776
Q ss_pred hh
Q 010734 373 CE 374 (502)
Q Consensus 373 ~e 374 (502)
+-
T Consensus 328 ~~ 329 (332)
T 2wkq_A 328 VL 329 (332)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 188
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=39.09 E-value=1.5e+02 Score=27.48 Aligned_cols=105 Identities=12% Similarity=0.143 Sum_probs=60.1
Q ss_pred cccHHHHHHHHhhHHHHHHHHhhcCCcEEEEe--cCCCC-CCHHHH----HHHHHHHHHcC-CCeEEEcCc--cccCccc
Q 010734 292 NENVALVEAGCVNLARHIANTKAYGANVVVAV--NMFAT-DSKAEL----NAVRNAAMAAG-AFDAVVCSH--HAHGGKG 361 (502)
Q Consensus 292 ~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAI--NrF~t-DT~~Ei----~~v~~~c~~~G-v~~~~vs~~--wakGGeG 361 (502)
.+|-+.-++.+..+++.|+..+.+|.+.||.. ..++. ++++.+ +.+++.|+.+. +. +++-++ |...--.
T Consensus 102 ~~d~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~v~-l~lEn~~~~~~~~~~ 180 (290)
T 2zvr_A 102 HPNDEIRKKAIERVVKHTEVAGMFGALVIIGLVRGRREGRSYEETEELFIESMKRLLELTEHAK-FVIEPLNRYETDFIN 180 (290)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHTCEEEESGGGCCCTTSCHHHHHHHHHHHHHHHHHHCSSCC-EEECCCCTTTCSSCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCCCCCCcCHHHHHHHHHHHHHHHHHHhccCE-EEEEeCCCcCccccC
Confidence 45556677888999999999999999999922 12222 334443 33444444332 64 777665 2111112
Q ss_pred hhHHHHHHHHHhhcCCCCccccCCC------CCCHHHHHHHHHH
Q 010734 362 AVDLGIAVQRACENVTQPLKFLYPL------DVSIKEKIDTIAR 399 (502)
Q Consensus 362 a~eLA~~Vv~a~e~~~~~fk~LY~~------~~sI~eKIe~IA~ 399 (502)
..+-+..+++.+.. .++.+++|. ..++.+=|++...
T Consensus 181 ~~~~~~~l~~~~~~--~~vgl~~D~~h~~~~g~d~~~~l~~~~~ 222 (290)
T 2zvr_A 181 TIDDALRILRKINS--NRVGILADTFHMNIEEVNIPESLKRAGE 222 (290)
T ss_dssp SHHHHHHHHHHHCC--TTEEEEEEHHHHHHHCSSHHHHHHHHGG
T ss_pred CHHHHHHHHHHcCC--CCEEEEEehhHhhhcCCCHHHHHHHhhc
Confidence 34445566666642 356666653 3455555665554
No 189
>1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A
Probab=38.96 E-value=1.3e+02 Score=30.82 Aligned_cols=100 Identities=17% Similarity=0.174 Sum_probs=62.0
Q ss_pred EEEeeeh-hhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhh-cCCcEEEEecCCCCCC----HHHHHH
Q 010734 263 VIVATIR-ALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKA-YGANVVVAVNMFATDS----KAELNA 336 (502)
Q Consensus 263 VlVaTvR-ALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~-fGvPvVVAINrF~tDT----~~Ei~~ 336 (502)
||+.+-. +.+|++|.... . .++.++.-.|...+.+|+..+.+ |+|||++=+-+-.+.. +.-++.
T Consensus 56 vIlq~s~g~~~~~~g~~~~-------~---~~~~~~~i~ga~~~~~~v~~~A~~~~VPVaLHlDHg~~~~~~~i~~~i~a 125 (358)
T 1dos_A 56 VIVQFSNGGASFIAGKGVK-------S---DVPQGAAILGAISGAHHVHQMAEHYGVPVILHTDHCAKKLLPWIDGLLDA 125 (358)
T ss_dssp EEEEECHHHHHHHHCTTSC-------C---CSTTHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGGHHHHHHHHHH
T ss_pred EEEECChhHHHHhcCCCcc-------c---cchhhhHHHhHHHHHHHHHHHHHHCCCCEEEECCCCCCccHHHHHHHHHH
Confidence 4444444 48888654310 0 13668888998888999888765 9999988888876642 223334
Q ss_pred HHHHHHHcCCCeEEEcCccccCcc----chhHHHHHHHHHhh
Q 010734 337 VRNAAMAAGAFDAVVCSHHAHGGK----GAVDLGIAVQRACE 374 (502)
Q Consensus 337 v~~~c~~~Gv~~~~vs~~wakGGe----Ga~eLA~~Vv~a~e 374 (502)
..++|++.|-. -.+.|--||.. =-+++.++|++.+.
T Consensus 126 ~~~~~~~~~~~--gFtSVMiDgS~~p~eENI~~Tkevv~~ah 165 (358)
T 1dos_A 126 GEKHFAATGKP--LFSSHMIDLSEESLQENIEICSKYLERMS 165 (358)
T ss_dssp HHHHHHHHSSC--SCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccC--CCceEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 55566666521 12344445553 34557778888765
No 190
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=38.91 E-value=39 Score=35.82 Aligned_cols=41 Identities=5% Similarity=0.131 Sum_probs=28.5
Q ss_pred HHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010734 307 RHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 347 (502)
Q Consensus 307 kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~ 347 (502)
++.+.++.+++|+++++|+-.-......+.+.++.+..|..
T Consensus 125 ~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~~ 165 (528)
T 3tr5_A 125 KLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILRIH 165 (528)
T ss_dssp HHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCE
T ss_pred HHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhCCC
Confidence 35566778999999999997654434444566666667763
No 191
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=38.88 E-value=1.7e+02 Score=26.01 Aligned_cols=66 Identities=12% Similarity=0.068 Sum_probs=43.4
Q ss_pred HHHHhhc--CCcEEEEecCCCCCC-----HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 309 IANTKAY--GANVVVAVNMFATDS-----KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 309 IeNi~~f--GvPvVVAINrF~tDT-----~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
++.++.. ++|+++++|+-.-.. +++.+.+.+++...|.. +.+-+.=++-|+|-.+|-+.+++.+.+
T Consensus 133 ~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 133 FYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNP-IKFSSFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp HHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSC-EEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCC-ceEEEEecccCCCHHHHHHHHHHHHHH
Confidence 4455555 899999999964322 33344677788777721 223344567789988888888777653
No 192
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=38.83 E-value=26 Score=34.85 Aligned_cols=103 Identities=21% Similarity=0.245 Sum_probs=62.0
Q ss_pred CeEEeeccccccccchhccccccccCCCCCCeEE---EEeeehhhhhcCCCCCccCCCCCchhccc------ccHHHH-H
Q 010734 230 GFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAV---IVATIRALKMHGGGPQVVAGKPLDHAYLN------ENVALV-E 299 (502)
Q Consensus 230 dyvVTEAGFgaDlGaEKF~dIkcr~~gl~P~a~V---lVaTvRALK~HGG~~~~~~~~pl~~~l~~------eNl~AL-~ 299 (502)
||+||-.-|..|. .++|++ +||..|+.--.+. -+.+.+.+++-... .|-.+|+++.+ .|.+++ +
T Consensus 175 df~iTQ~ffD~~~-~~~f~~-~~r~~Gi~vPIi~GImPi~s~~~~~~~~~~----~Gv~iP~~l~~~l~~~~~d~~~~~~ 248 (310)
T 3apt_A 175 DFAITQLFFNNAH-YFGFLE-RARRAGIGIPILPGIMPVTSYRQLRRFTEV----CGASIPGPLLAKLERHQDDPKAVLE 248 (310)
T ss_dssp SEEEECCCSCHHH-HHHHHH-HHHHTTCCSCEECEECCCCCTTHHHHHHHT----SCCCCCHHHHHHHHHSTTCHHHHHH
T ss_pred CEEEecccCCHHH-HHHHHH-HHHHcCCCCeEEEEecccCCHHHHHHHHHc----CCCCCCHHHHHHHHhccCCHHHHHH
Confidence 9999999999887 888998 8999998621111 14566777554222 23334554322 233333 4
Q ss_pred HHHhhHHHHHHHHhhcCCcEE--EEecCCCCCCHHHHHHHHHHHHHcCC
Q 010734 300 AGCVNLARHIANTKAYGANVV--VAVNMFATDSKAELNAVRNAAMAAGA 346 (502)
Q Consensus 300 ~G~~NL~kHIeNi~~fGvPvV--VAINrF~tDT~~Ei~~v~~~c~~~Gv 346 (502)
.|.+--...++.+...|+|=| -.+|+. +.+.+.|+.+|.
T Consensus 249 ~gi~~a~e~~~~L~~~gv~GiH~yt~n~~--------~~~~~I~~~l~~ 289 (310)
T 3apt_A 249 IGVEHAVRQVAELLEAGVEGVHFYTLNKS--------PATRMVLERLGL 289 (310)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEECCSSC--------CHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHCCCCeEEEeCCCCH--------HHHHHHHHHcCC
Confidence 577666667777777777722 223332 345555666666
No 193
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=38.78 E-value=1.1e+02 Score=28.99 Aligned_cols=55 Identities=13% Similarity=0.118 Sum_probs=38.8
Q ss_pred HHHHhhHHHHHHHHhhcCCcEEEEecCCC-CCCHHHHH-------HHHHHHHHcCCCe--EEEcCcc
Q 010734 299 EAGCVNLARHIANTKAYGANVVVAVNMFA-TDSKAELN-------AVRNAAMAAGAFD--AVVCSHH 355 (502)
Q Consensus 299 ~~G~~NL~kHIeNi~~fGvPvVVAINrF~-tDT~~Ei~-------~v~~~c~~~Gv~~--~~vs~~w 355 (502)
++....+++.|+-.+.+|.+.||.- -.+ .+++++++ .+.+.|++.|+ . .++-+|+
T Consensus 104 ~~~~~~~~~~i~~A~~lG~~~v~~~-~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv-~~~l~~En~~ 168 (303)
T 3l23_A 104 PKIMEYWKATAADHAKLGCKYLIQP-MMPTITTHDEAKLVCDIFNQASDVIKAEGI-ATGFGYHNHN 168 (303)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEC-SCCCCCSHHHHHHHHHHHHHHHHHHHHTTC-TTCEEEECCS
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEC-CCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-cceEEEccCc
Confidence 4557789999999999999999873 222 24555543 45567788899 5 5555554
No 194
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7
Probab=38.50 E-value=59 Score=29.87 Aligned_cols=80 Identities=16% Similarity=0.238 Sum_probs=53.1
Q ss_pred hhHHHHHHHHhhcCCcEEEEe-cCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCcc
Q 010734 303 VNLARHIANTKAYGANVVVAV-NMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLK 381 (502)
Q Consensus 303 ~NL~kHIeNi~~fGvPvVVAI-NrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk 381 (502)
..+++.|+..+.+|.|.||.- -.++.+ .-+..+.+.+++.|+. +++-+++..=+ +..+-+..+++.++...+++.
T Consensus 84 ~~~~~~i~~A~~lGa~~v~~~~g~~~~~--~~l~~l~~~a~~~Gv~-l~lEn~~~~~~-~~~~~~~~ll~~v~~~~~~vg 159 (264)
T 1yx1_A 84 PELEPTLRRAEACGAGWLKVSLGLLPEQ--PDLAALGRRLARHGLQ-LLVENDQTPQG-GRIEVLERFFRLAERQQLDLA 159 (264)
T ss_dssp TTHHHHHHHHHHTTCSEEEEEEECCCSS--CCHHHHHHHHTTSSCE-EEEECCSSHHH-HCHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCcH--HHHHHHHHHHHhcCCE-EEEecCCCCCC-CCHHHHHHHHHHHHhcCCCeE
Confidence 578899999999999998753 233332 2677888889999995 87877743211 233445566666643222377
Q ss_pred ccCCC
Q 010734 382 FLYPL 386 (502)
Q Consensus 382 ~LY~~ 386 (502)
.+||.
T Consensus 160 ~~~D~ 164 (264)
T 1yx1_A 160 MTFDI 164 (264)
T ss_dssp EEEET
T ss_pred EEEeh
Confidence 77776
No 195
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=38.26 E-value=58 Score=31.28 Aligned_cols=59 Identities=12% Similarity=0.148 Sum_probs=40.9
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHc-CCCeEEEcCccccCccchhHHHH
Q 010734 305 LARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAA-GAFDAVVCSHHAHGGKGAVDLGI 367 (502)
Q Consensus 305 L~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~-Gv~~~~vs~~wakGGeGa~eLA~ 367 (502)
+..|++...+.|+|+|+.-= .-++++.+.|+++|++. ++ .+..+-.|+.|.-=-.+|++
T Consensus 58 ~~~~~~~a~~~g~~~VigTT---G~~~e~~~~l~~aa~~~~~~-~vv~a~N~siGv~ll~~l~~ 117 (245)
T 1p9l_A 58 VMGNLEFLIDNGIHAVVGTT---GFTAERFQQVESWLVAKPNT-SVLIAPNFAIGAVLSMHFAK 117 (245)
T ss_dssp HHHHHHHHHHTTCEEEECCC---CCCHHHHHHHHHHHHTSTTC-EEEECSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEcCC---CCCHHHHHHHHHHHHhCCCC-CEEEECCccHHHHHHHHHHH
Confidence 44566677788999998633 24567889999999876 77 47788777766554444443
No 196
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=37.98 E-value=56 Score=33.32 Aligned_cols=66 Identities=23% Similarity=0.179 Sum_probs=44.2
Q ss_pred HHHHHHhhcCCcEEEEecCCCCC--CHHHHHHHHHHHHHc-----CCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 307 RHIANTKAYGANVVVAVNMFATD--SKAELNAVRNAAMAA-----GAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 307 kHIeNi~~fGvPvVVAINrF~tD--T~~Ei~~v~~~c~~~-----Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
++++-++..|.|+|+++|+..-. .+...+.+.+++++. ++. +..+. |+=|+|-.+|-+.+.+.+++
T Consensus 297 ~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~S--A~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 297 RIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAP-ILFMS--ALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp HHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSC-EEECC--TTTCTTGGGHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCC-EEEEc--CCCCcCHHHHHHHHHHHHHH
Confidence 44555666899999999997542 233445555555543 453 44443 56689999999888888764
No 197
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=37.78 E-value=37 Score=30.28 Aligned_cols=67 Identities=12% Similarity=0.001 Sum_probs=42.8
Q ss_pred HHHHHHhhc--CCcEEEEecCCCCCCH--------------HHHHHHHHHHHHcCCCeEEEcCccccCccc-hhHHHHHH
Q 010734 307 RHIANTKAY--GANVVVAVNMFATDSK--------------AELNAVRNAAMAAGAFDAVVCSHHAHGGKG-AVDLGIAV 369 (502)
Q Consensus 307 kHIeNi~~f--GvPvVVAINrF~tDT~--------------~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeG-a~eLA~~V 369 (502)
..++.++++ ++|+|++.|+-.-..+ -..+...++|++.|+..+..+ =++=|+| -.+|=+.+
T Consensus 120 ~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~--SA~~g~g~v~~lf~~l 197 (214)
T 3q3j_B 120 KWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEG--SAFTSEKSIHSIFRTA 197 (214)
T ss_dssp HHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEEC--CTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEe--ccCCCcccHHHHHHHH
Confidence 334444443 8999999998653211 123456778888888324433 3567888 77888888
Q ss_pred HHHhhc
Q 010734 370 QRACEN 375 (502)
Q Consensus 370 v~a~e~ 375 (502)
++.+.+
T Consensus 198 ~~~~~~ 203 (214)
T 3q3j_B 198 SMLCLN 203 (214)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 877754
No 198
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=37.40 E-value=81 Score=29.80 Aligned_cols=27 Identities=7% Similarity=0.119 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEcCccc
Q 010734 329 DSKAELNAVRNAAMAAGAFDAVVCSHHA 356 (502)
Q Consensus 329 DT~~Ei~~v~~~c~~~Gv~~~~vs~~wa 356 (502)
+++++++.|.++|++.|+. +++-+.++
T Consensus 190 ~~~~~l~~i~~~~~~~~~~-li~De~~~ 216 (375)
T 2eh6_A 190 ASEDFLSKLQEICKEKDVL-LIIDEVQT 216 (375)
T ss_dssp CCHHHHHHHHHHHHHHTCE-EEEECTTT
T ss_pred CCHHHHHHHHHHHHHhCCE-EEEecccc
Confidence 7899999999999999984 77777776
No 199
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=37.33 E-value=35 Score=35.52 Aligned_cols=70 Identities=16% Similarity=0.192 Sum_probs=44.6
Q ss_pred hHHHHHHHHhhcC--CcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcC
Q 010734 304 NLARHIANTKAYG--ANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENV 376 (502)
Q Consensus 304 NL~kHIeNi~~fG--vPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~ 376 (502)
++..-++.++.++ .|+||+.|+..-.... ..+.+++++.+.|.. +.. .=++-|+|-.+|-+.+.+.+.+.
T Consensus 136 ~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~--vSA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 136 NKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENR-FHR--ISCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp GHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTC-EEE--CCC-----CTTHHHHHHHHHTCT
T ss_pred hHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCc-eEE--EecCcccCHHHHHHHHHHHHhcc
Confidence 3445556666665 9999999997543222 345677777888875 332 33577899999999999988753
No 200
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=37.20 E-value=84 Score=31.26 Aligned_cols=89 Identities=7% Similarity=-0.037 Sum_probs=54.2
Q ss_pred CCCeEEeeccccccccchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHH
Q 010734 228 PGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLAR 307 (502)
Q Consensus 228 ~~dyvVTEAGFgaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~k 307 (502)
.-||||--++-|.+.-..-.+ + .-|.+|+|++-- .-++.+..+|+..|.+
T Consensus 247 ~yD~VIID~pP~~~~~~~~al---~-----~aD~vliv~~p~----------------------~~~~~~~~~~l~~l~~ 296 (403)
T 3ez9_A 247 DYDFIFIDTGPHLDPFLLNGL---A-----ASDLLLTPTPPA----------------------QVDFHSTLKYLTRLPE 296 (403)
T ss_dssp GCSEEEEEECSSCSHHHHHHH---H-----HCSEEEEEECSS----------------------HHHHHHHHHHHHTHHH
T ss_pred cCCEEEEECCCCccHHHHHHH---H-----HCCEEEEEecCc----------------------hhhHHHHHHHHHHHHH
Confidence 459999988877643222221 1 247788887621 2345667889999999
Q ss_pred HHHHHhhcCCc-----EEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010734 308 HIANTKAYGAN-----VVVAVNMFATDSKAELNAVRNAAMAAGAF 347 (502)
Q Consensus 308 HIeNi~~fGvP-----vVVAINrF~tDT~~Ei~~v~~~c~~~Gv~ 347 (502)
-++.++++|.+ +|..+|++.. +...-+...+..+..|..
T Consensus 297 ~~~~l~~~~~~~~l~giv~vl~~~~~-~~~~~~~~~~~~~~~g~~ 340 (403)
T 3ez9_A 297 MLEQLEEEGVEPRLSASIGFMSKMTG-KRDHETSHSLAREVYASN 340 (403)
T ss_dssp HHHHHHHTTCCCCCCEEEEEECC----CHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCCCCceeEEEEEEeccCC-chhHHHHHHHHHHHhhHh
Confidence 99999998776 3668899863 322222223333446763
No 201
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=36.05 E-value=37 Score=29.37 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=43.1
Q ss_pred cccHHHHHHHHhhHHHHHHHHhh-c-CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEc
Q 010734 292 NENVALVEAGCVNLARHIANTKA-Y-GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVC 352 (502)
Q Consensus 292 ~eNl~AL~~G~~NL~kHIeNi~~-f-GvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs 352 (502)
+.+++.+.+ .|.+.|+..-. | |-|||+=+-... ++.+++.+.+.|++.|...+.++
T Consensus 24 ~~d~~~l~~---~L~~ki~~aP~FF~~aPVVlDl~~l~--~~~dl~~L~~~l~~~gl~~vGV~ 81 (120)
T 3ghf_A 24 EAEPEVIRQ---ALEDKIAQAPAFLKHAPVVINVSGLE--SPVNWPELHKIVTSTGLRIIGVS 81 (120)
T ss_dssp SCCHHHHHH---HHHHHHHHSHHHHTTCEEEEEEEECC--SSCCHHHHHHHHHTTTCEEEEEE
T ss_pred CCCHHHHHH---HHHHHHHhChHhhCCCcEEEEccccC--ChHHHHHHHHHHHHcCCEEEEEe
Confidence 456777765 56777888877 3 889999888776 34679999999999999765554
No 202
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=36.03 E-value=93 Score=25.56 Aligned_cols=58 Identities=16% Similarity=0.007 Sum_probs=34.8
Q ss_pred cCCcEEEEecCCCCCCH---HHHHHHH--HHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 315 YGANVVVAVNMFATDSK---AELNAVR--NAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~---~Ei~~v~--~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
.++|+++++|+-.-..+ +|+.... +.+++.++. + -+.=++=|+|-.+|-+.+.+.+.+
T Consensus 107 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 107 RKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQ-I--FKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp TTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEE-E--EECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceE-E--EECcCCCCcCHHHHHHHHHHHHhh
Confidence 68999999999654332 3332221 112223432 3 234466788888888888877753
No 203
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=34.46 E-value=1.5e+02 Score=27.28 Aligned_cols=84 Identities=10% Similarity=-0.042 Sum_probs=50.5
Q ss_pred HHHHHhhHHHHHHHHhhcCCcEEEEecCCCC--CCHHH-------HHHHHHHHHHcCCCeEEEcC-----ccccCccchh
Q 010734 298 VEAGCVNLARHIANTKAYGANVVVAVNMFAT--DSKAE-------LNAVRNAAMAAGAFDAVVCS-----HHAHGGKGAV 363 (502)
Q Consensus 298 L~~G~~NL~kHIeNi~~fGvPvVVAINrF~t--DT~~E-------i~~v~~~c~~~Gv~~~~vs~-----~wakGGeGa~ 363 (502)
.++....+++.|+..+.+|.+.||..--.+. ++++. +..+.+.|++.|+. +++-. ++..-. ...
T Consensus 88 r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~n~~~~~~~~~-~~~ 165 (269)
T 3ngf_A 88 EQEFRDNVDIALHYALALDCRTLHAMSGITEGLDRKACEETFIENFRYAADKLAPHGIT-VLVEPLNTRNMPGYFI-VHQ 165 (269)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEECCBCBCTTSCHHHHHHHHHHHHHHHHHHHGGGTCE-EEECCCCTTTSTTBSC-CCH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEccCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEeeCCcccCccchh-cCH
Confidence 4566778999999999999999986321332 23333 33455567778995 76654 211111 233
Q ss_pred HHHHHHHHHhhcCCCCccccCC
Q 010734 364 DLGIAVQRACENVTQPLKFLYP 385 (502)
Q Consensus 364 eLA~~Vv~a~e~~~~~fk~LY~ 385 (502)
+-+..+++.+.. .++.+.||
T Consensus 166 ~~~~~l~~~v~~--~~vg~~~D 185 (269)
T 3ngf_A 166 LEAVGLVKRVNR--PNVAVQLD 185 (269)
T ss_dssp HHHHHHHHHHCC--TTEEEEEE
T ss_pred HHHHHHHHHhCC--CCCCeEEE
Confidence 445566666642 34777665
No 204
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=34.24 E-value=1.1e+02 Score=29.40 Aligned_cols=108 Identities=13% Similarity=0.080 Sum_probs=70.2
Q ss_pred HHHHHHHHhhcCC-----cEEE----EecCCCCC----------CHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHH
Q 010734 305 LARHIANTKAYGA-----NVVV----AVNMFATD----------SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDL 365 (502)
Q Consensus 305 L~kHIeNi~~fGv-----PvVV----AINrF~tD----------T~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eL 365 (502)
..+|++-+++||+ .+|- .+|-=.+. +.+++......++-.|.. ++-.+. .|-.|..++
T Consensus 94 ~g~~~~a~~~~g~~~~~~e~i~~gYivv~p~s~~~~~~~a~~~~~~e~~~~~a~~a~~~g~~-~VYld~--sG~~~~~~~ 170 (228)
T 3vzx_A 94 VGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSELLQLP-IFYLEY--SGVLGDIEA 170 (228)
T ss_dssp THHHHHHHHHHHHHHHHSCEEEEEEEECCSSSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCS-EEEEEC--TTSCCCHHH
T ss_pred hhHHHHHHHHcCCCCcccceeeeEEEEECCCCcceeeecccCCCCHHHHHHHHHHHHHcCCC-EEEecC--CCCcCCHHH
Confidence 3567888899996 6666 57763322 346777777777767875 665555 566666677
Q ss_pred HHHHHHHhhcCCCCccccCCCCCCHHHHHHHHHHHhCCCceeeCHHHHHHHHHHHH
Q 010734 366 GIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARSYGASGVEYSEEAEKQIEMYTG 421 (502)
Q Consensus 366 A~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~IYGA~~V~fS~~A~kqLk~ie~ 421 (502)
-+++.+.+. +....|.-.-+=.|.++.++ .||+.|..-..+-+..+.+++
T Consensus 171 i~~i~~~~~----~~Pv~vGGGI~t~e~a~~~~--~gAD~VVVGSa~v~~p~~~~~ 220 (228)
T 3vzx_A 171 VKKTKAVLE----TSTLFYGGGIKDAETAKQYA--EHADVIVVGNAVYEDFDRALK 220 (228)
T ss_dssp HHHHHHHCS----SSEEEEESSCCSHHHHHHHH--TTCSEEEECTHHHHCHHHHHH
T ss_pred HHHHHHhcC----CCCEEEeCCCCCHHHHHHHH--hCCCEEEEChHHhcCHHHHHH
Confidence 666665541 23445555555556666665 599999998877766655544
No 205
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=33.96 E-value=79 Score=27.59 Aligned_cols=57 Identities=11% Similarity=-0.018 Sum_probs=37.1
Q ss_pred cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 315 YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
.++|+|++.|+..-..+. ..+..+.++...+.. +.. .=|+=|+|-.+|-+.+++.+.
T Consensus 113 ~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~-~~e--~SA~~g~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 113 EDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXK-FIE--TSAAVQHNVKELFEGIVRQVR 171 (192)
T ss_dssp SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEE--CBTTTTBSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEechhhhccccccHHHHHHHHHHhCCc-eEE--eccccCCCHHHHHHHHHHHHH
Confidence 589999999997542211 123334566677763 433 336668998888888877664
No 206
>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=33.55 E-value=14 Score=35.80 Aligned_cols=14 Identities=21% Similarity=0.498 Sum_probs=12.4
Q ss_pred CceeEEccc-ccchh
Q 010734 196 GTPVLVHAG-PFANI 209 (502)
Q Consensus 196 gtPa~vHgG-PFANI 209 (502)
..|++|||| ||+|.
T Consensus 42 ~~~vlVhGGG~~~~~ 56 (269)
T 3ll9_A 42 SSLMIVHGAGSFGHP 56 (269)
T ss_dssp SSEEEEECCGGGTHH
T ss_pred CCEEEEECCcHHHHH
Confidence 679999987 99887
No 207
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=33.51 E-value=2.1e+02 Score=29.45 Aligned_cols=76 Identities=17% Similarity=0.104 Sum_probs=53.5
Q ss_pred HHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 296 ALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 296 ~AL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
+.+..|..-|......+ ...|.|+++|+-...+.+.++.+++.+++.|.. +..++ +.=|+|-.+|.+.+.+.+.+
T Consensus 251 ~~ls~g~~el~~la~aL--~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~-vi~iS--A~~g~gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 251 KTLETLRKEVGAYDPAL--LRRPSLVALNKVDLLEEEAVKALADALAREGLA-VLPVS--ALTGAGLPALKEALHALVRS 325 (416)
T ss_dssp HHHHHHHHHHHHHCHHH--HHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSC-EEECC--TTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhHHh--hcCCEEEEEECCChhhHHHHHHHHHHHHhcCCe-EEEEE--CCCccCHHHHHHHHHHHHHh
Confidence 44555554444432222 358999999998777767778888888877875 54444 45578999999999999875
Q ss_pred C
Q 010734 376 V 376 (502)
Q Consensus 376 ~ 376 (502)
.
T Consensus 326 ~ 326 (416)
T 1udx_A 326 T 326 (416)
T ss_dssp S
T ss_pred c
Confidence 3
No 208
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=33.43 E-value=63 Score=30.01 Aligned_cols=60 Identities=17% Similarity=0.047 Sum_probs=40.0
Q ss_pred cCCcEEEEecCCCC--CCHH-HH-----HHHHHHHHHcCCCeEEEcCccccC---ccchhHHHHHHHHHhhc
Q 010734 315 YGANVVVAVNMFAT--DSKA-EL-----NAVRNAAMAAGAFDAVVCSHHAHG---GKGAVDLGIAVQRACEN 375 (502)
Q Consensus 315 fGvPvVVAINrF~t--DT~~-Ei-----~~v~~~c~~~Gv~~~~vs~~wakG---GeGa~eLA~~Vv~a~e~ 375 (502)
.+.|+||++|+-.- .+.+ .+ +.+++++++.|.+ +.+-+.=+.+ ++|-.+|-++|.+.+.+
T Consensus 138 ~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~-~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 138 LKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGR-VCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp GGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTC-EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCe-EEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 37899999998432 2222 22 3466777777876 4433333333 78999999999999875
No 209
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=33.02 E-value=1.6e+02 Score=27.52 Aligned_cols=115 Identities=15% Similarity=0.034 Sum_probs=66.5
Q ss_pred HHhhHHHHHHHHhh-cCCcE-EEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCC
Q 010734 301 GCVNLARHIANTKA-YGANV-VVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQ 378 (502)
Q Consensus 301 G~~NL~kHIeNi~~-fGvPv-VVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~ 378 (502)
++.++.+.++.+++ .++++ -|.+|++.+... -+.+.++++..|.. +. ...-. -..+.++...+ .
T Consensus 160 ~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~~--~~~~~~l~~~~g~~-~l-~~Ip~---------~~~~~~a~~~g-~ 225 (289)
T 2afh_E 160 AANNISKGIVKYANSGSVRLGGLICNSRNTDRE--DELIIALANKLGTQ-MI-HFVPR---------DNVVQRAEIRR-M 225 (289)
T ss_dssp HHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTH--HHHHHHHHHHHTSC-EE-EEECC---------CHHHHHHHHTT-S
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEEecCCchhH--HHHHHHHHHHcCcc-cc-ccCCC---------chhHHHHHHcC-C
Confidence 34566666666543 68884 478899865443 33455566667774 32 22211 12444454443 1
Q ss_pred CccccCCCCCCHHHHHHHHHH-HhCCCc-eeeCHHHHHHHHHHHHCCCCCCCeeE
Q 010734 379 PLKFLYPLDVSIKEKIDTIAR-SYGASG-VEYSEEAEKQIEMYTGQGFSGLPICM 431 (502)
Q Consensus 379 ~fk~LY~~~~sI~eKIe~IA~-IYGA~~-V~fS~~A~kqLk~ie~~Gf~~LPVCm 431 (502)
.-+.|..+.+..+-++.+|+ +.+-.. ..+.+.-.++++.+-. +|+.+=+||
T Consensus 226 -~v~~~~~~s~~~~~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 278 (289)
T 2afh_E 226 -TVIEYDPKAKQADEYRALARKVVDNKLLVIPNPITMDELEELLM-EFGIMEVED 278 (289)
T ss_dssp -CHHHHCTTSHHHHHHHHHHHHHHHCCCCBCCCCCCHHHHHHHHH-HTTSSCCCC
T ss_pred -CceeeCCCCHHHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHH-HhCceeeec
Confidence 12345666778888999999 765443 3355555555555544 577788886
No 210
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=32.93 E-value=82 Score=26.78 Aligned_cols=58 Identities=12% Similarity=0.023 Sum_probs=34.8
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHH-----HHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 315 YGANVVVAVNMFATDSKAELNAVRNAA-----MAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~Ei~~v~~~c-----~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
.+.|+|+++|+-.-..+.+.+.+.+.. ++.++ .+. +.=++=|+|-.+|-+.+.+.+.+
T Consensus 122 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 122 RKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTW-TIV--KSSSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp TTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE-EEE--ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCce-EEE--EccCCCccCHHHHHHHHHHHHHh
Confidence 489999999997654432222232221 22233 132 33356788888888888887754
No 211
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=32.80 E-value=69 Score=29.21 Aligned_cols=57 Identities=11% Similarity=-0.018 Sum_probs=38.3
Q ss_pred cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 315 YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~--Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
-++|+|++.|+-.-..+. ..+..++++...|+. +.. .=|+=|+|-.+|-+.+++.+.
T Consensus 144 ~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~-~~e--~SAk~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 144 EDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCK-FIE--TSAAVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp TTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEE--CBTTTTBSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCE-EEE--EeCCCCCCHHHHHHHHHHHHH
Confidence 489999999996532211 123345667777873 433 346778999999888887764
No 212
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=32.70 E-value=45 Score=32.21 Aligned_cols=132 Identities=14% Similarity=0.073 Sum_probs=75.1
Q ss_pred HhhcCCcEEEEecCCCCCC------HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCC
Q 010734 312 TKAYGANVVVAVNMFATDS------KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYP 385 (502)
Q Consensus 312 i~~fGvPvVVAINrF~tDT------~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~ 385 (502)
+++.|..|+-..+.++.+. ..+++.++..|+++|++-..+.-.|.+ .+--.+|.+.+-+. .-..--|=-++
T Consensus 24 l~~~G~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g~~-~~e~e~l~~~l~~~-~i~~vv~Gdi~- 100 (237)
T 3rjz_A 24 AIKNRFSVKFLVTMVSENEESYMYHTINANLTDLQARALGIPLVKGFTQGEK-EKEVEDLKRVLSGL-KIQGIVAGALA- 100 (237)
T ss_dssp HHHTTCEEEEEEEEECC--------CCSSSHHHHHHHHHTCCEEEEEC-------CHHHHHHHHTTS-CCSEEECC----
T ss_pred HHHcCCeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCCEEEEECCCCc-hHHHHHHHHHHHhc-CCcEEEECCcc-
Confidence 4456777665556666542 245788899999999974444433332 12233344333211 00000011222
Q ss_pred CCCCHHHHHHHHHHHhCCCcee--eCHHHHHHHHHHHHCCCCCCCeeEeecCCCCCCCCCCCCCCCCc
Q 010734 386 LDVSIKEKIDTIARSYGASGVE--YSEEAEKQIEMYTGQGFSGLPICMAKTQYSFSHNAAEKGAPTGF 451 (502)
Q Consensus 386 ~~~sI~eKIe~IA~IYGA~~V~--fS~~A~kqLk~ie~~Gf~~LPVCmAKTqySlSdDp~l~g~P~gf 451 (502)
....+..++.+|.-.|-.-+. |-...++=++++-+.||.-.=||++...+ |++.+|+.=+.
T Consensus 101 -s~yqr~r~e~vc~~~gl~~~~PLW~~d~~~Ll~e~i~~G~~aiiv~v~~~gL----~~~~lG~~l~~ 163 (237)
T 3rjz_A 101 -SKYQRKRIEKVAKELGLEVYTPAWGRDAKEYMRELLNLGFKIMVVGVSAYGL----DESWLGRILDE 163 (237)
T ss_dssp -CCSHHHHHHHHHHHTTCEEECSSSSCCHHHHHHHHHHTTCEEEEEEEESTTC----CGGGTTCBCCH
T ss_pred -hHHHHHHHHHHHHHcCCEEEccccCCCHHHHHHHHHHCCCEEEEEEEecCCC----ChHHCCCccCH
Confidence 346788899999855655444 23344566778888999999999988765 57789987553
No 213
>2lf6_A Effector protein hopab1; type III effector, structural genomics, PSI-biology, protein structure initiative; NMR {Pseudomonas syringae PV}
Probab=32.22 E-value=43 Score=28.80 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=32.8
Q ss_pred HHHHHHhhhhcccCcChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHH
Q 010734 22 LAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPE 80 (502)
Q Consensus 22 laA~idn~i~~~n~~~~~~~~~~l~p~~~~g~r~~~~~~~~r~~~l~~~~~~p~~~~~~ 80 (502)
|.+++++||.|.. -++...-+.|+..||.+..++++|.-
T Consensus 40 Lr~Al~~~i~~~~--------------------piP~Di~raL~~vGI~p~id~~~Slv 78 (101)
T 2lf6_A 40 LRTSLGRYIMSLE--------------------PLPPDLRRALESVGINPFIPEELSLV 78 (101)
T ss_dssp HHHHHHHHHSSSC--------------------CCCHHHHHHHHHHTCCSCCCTTTTTT
T ss_pred HHHHHHHHHHhcC--------------------CCCHHHHHHHHcCCCCCCCcchHHHh
Confidence 6788999999875 36788889999999999999887654
No 214
>1xla_A D-xylose isomerase; isomerase(intramolecular oxidoreductase); 2.30A {Arthrobacter SP} SCOP: c.1.15.3 PDB: 1die_A* 1did_A 1xlb_A 1xlc_A* 1xld_A* 1xle_A 1xlf_A* 1xlg_A* 1xlh_A 1xli_A* 1xlj_A* 1xlk_A 1xll_A 1xlm_A* 4xia_A* 5xia_A*
Probab=31.73 E-value=1.5e+02 Score=29.47 Aligned_cols=105 Identities=12% Similarity=0.102 Sum_probs=61.0
Q ss_pred ccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCC-------CCCCHHH-------HHHHHHHHHHcC--CCeEEEcCc
Q 010734 291 LNENVALVEAGCVNLARHIANTKAYGANVVVAVNMF-------ATDSKAE-------LNAVRNAAMAAG--AFDAVVCSH 354 (502)
Q Consensus 291 ~~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAINrF-------~tDT~~E-------i~~v~~~c~~~G--v~~~~vs~~ 354 (502)
..++-+.-++.+..+++.|+..+.+|.+.||.-=-+ ..|.++. +..+.+++++.| ++ +++-++
T Consensus 104 ~~~d~~~r~~~i~~~~~~i~~A~~LGa~~vvv~~G~~g~~~~~~~~~~~~~~~~~e~L~~l~~~A~~~G~~v~-l~lE~~ 182 (394)
T 1xla_A 104 TSNDRSIRRFALAKVLHNIDLAAEMGAETFVMWGGREGSEYDGSKDLAAALDRMREGVDTAAGYIKDKGYNLR-IALEPK 182 (394)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTCEESSGGGCCHHHHHHHHHHHHHHHHHHHHHHTCCCE-EEECCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCCCccccccccCHHHHHHHHHHHHHHHHHHHHhcCCCeE-EEEecC
Confidence 346666778889999999999999999998863111 2243333 344556666889 85 777665
Q ss_pred ccc-Ccc---chhHHHHHHHHHhhcCCCCccccCCC------CCCHHHHHHHH
Q 010734 355 HAH-GGK---GAVDLGIAVQRACENVTQPLKFLYPL------DVSIKEKIDTI 397 (502)
Q Consensus 355 wak-GGe---Ga~eLA~~Vv~a~e~~~~~fk~LY~~------~~sI~eKIe~I 397 (502)
.-. +.. ...+-+..+++.+.. ++.+..++|. ..++.+-|+..
T Consensus 183 ~~e~~~~~~~~t~~~~~~li~~v~~-pn~vgl~lD~~H~~~~g~d~~~~i~~~ 234 (394)
T 1xla_A 183 PNEPRGDIFLPTVGHGLAFIEQLEH-GDIVGLNPETGHEQMAGLNFTHGIAQA 234 (394)
T ss_dssp SSSSSSEESSCSHHHHHHHHTTCTT-GGGEEECCBHHHHHTTTCCHHHHHHHH
T ss_pred CCCCCccccCCCHHHHHHHHHHhCC-CCceEEEEecCcccccCCCHHHHHHHH
Confidence 321 111 122333344444432 1226666654 34565555554
No 215
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=31.48 E-value=1.2e+02 Score=27.50 Aligned_cols=80 Identities=19% Similarity=0.086 Sum_probs=44.5
Q ss_pred HHHHhhcCCcEE-EEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCC
Q 010734 309 IANTKAYGANVV-VAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLD 387 (502)
Q Consensus 309 IeNi~~fGvPvV-VAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~ 387 (502)
++.+++.|++.+ |.+|++...+.. ..+.+.++..|.. +. ...-. -..+.++...+ . .-+.|..+
T Consensus 154 ~~~l~~~~~~~~~vv~N~~~~~~~~--~~~~~~~~~~~~~-~~-~~Ip~---------~~~~~~a~~~g-~-~v~~~~~~ 218 (263)
T 1hyq_A 154 KIVAERLGTKVLGVVVNRITTLGIE--MAKNEIEAILEAK-VI-GLIPE---------DPEVRRAAAYG-K-PVVLRSPN 218 (263)
T ss_dssp HHHHHHHTCEEEEEEEEEECTTTHH--HHHHHHHHHTTSC-EE-EEEEC---------CHHHHHHHHHT-S-CHHHHCTT
T ss_pred HHHHHhcCCCeeEEEEccCCccccc--chHHHHHHHhCCC-eE-EECCC---------CHHHHHHHHcC-C-ceEEcCCC
Confidence 333444466554 889999887765 4455666667774 32 11111 12333444332 1 12235556
Q ss_pred CCHHHHHHHHHH-HhCC
Q 010734 388 VSIKEKIDTIAR-SYGA 403 (502)
Q Consensus 388 ~sI~eKIe~IA~-IYGA 403 (502)
.+..+-++.+|+ +.+.
T Consensus 219 ~~~~~~~~~la~~l~~~ 235 (263)
T 1hyq_A 219 SPAARAIVELANYIAGG 235 (263)
T ss_dssp SHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 778888999999 8764
No 216
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=30.81 E-value=1.3e+02 Score=30.00 Aligned_cols=55 Identities=24% Similarity=0.303 Sum_probs=44.7
Q ss_pred HHHHHHHhhcCCcEE-EEec---CCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccc
Q 010734 306 ARHIANTKAYGANVV-VAVN---MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKG 361 (502)
Q Consensus 306 ~kHIeNi~~fGvPvV-VAIN---rF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeG 361 (502)
.+.|+.++..|.++| +.++ .|..|.-+.++.+.++|.+.|.. +++.-|...|++.
T Consensus 57 ~~~i~~lk~~G~N~VRip~~~~~~~~~~~l~~ld~~v~~a~~~Giy-VIlDlH~~~g~~~ 115 (345)
T 3jug_A 57 STAIPAIAEQGANTIRIVLSDGGQWEKDDIDTVREVIELAEQNKMV-AVVEVHDATGRDS 115 (345)
T ss_dssp HHHHHHHHHTTCSEEEEEECCSSSSCCCCHHHHHHHHHHHHTTTCE-EEEEECTTTTCCC
T ss_pred HHHHHHHHHcCCCEEEEEecCCCccCHHHHHHHHHHHHHHHHCCCE-EEEEeccCCCCCc
Confidence 468999999999987 4444 46778889999999999999995 8888787777654
No 217
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=30.75 E-value=3.4e+02 Score=25.42 Aligned_cols=83 Identities=11% Similarity=0.092 Sum_probs=46.5
Q ss_pred hHHHHHHHHh-hcCCcEE-EEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCcc
Q 010734 304 NLARHIANTK-AYGANVV-VAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLK 381 (502)
Q Consensus 304 NL~kHIeNi~-~fGvPvV-VAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk 381 (502)
.+.+.++.++ ..+++++ |.+|++... + .+.++++..|.. +.- .. .. -..+.++...+ +
T Consensus 199 ~~~~~l~~~~~~~~~~~~gvV~N~~~~~--~---~~~~~~~~~g~~-v~~-~I-p~--------~~~v~~a~~~g----~ 258 (307)
T 3end_A 199 RIIAAVQAKSKNYKVRLAGCVANRSRAT--D---EVDRFCKETNFR-RLA-HM-PD--------LDAIRRSRLKK----K 258 (307)
T ss_dssp HHHHHHHTTTTTCCCEEEEEEEESCSCC--H---HHHHHHHHHTCC-EEE-EE-CC--------CHHHHHHHHTT----C
T ss_pred HHHHHHHHhhhcCCCceEEEEEecCCcH--H---HHHHHHHHcCCC-cee-eC-Cc--------cHHHHHHHHcC----C
Confidence 3333444333 3678876 899999864 2 355566667875 321 11 11 22344444443 3
Q ss_pred ccC--CCC---CCHHHHHHHHHH-HhCCCce
Q 010734 382 FLY--PLD---VSIKEKIDTIAR-SYGASGV 406 (502)
Q Consensus 382 ~LY--~~~---~sI~eKIe~IA~-IYGA~~V 406 (502)
+++ ..+ .+..+-++.+|+ +.+....
T Consensus 259 ~v~~~~p~~~~s~~~~~~~~la~~l~~~~~~ 289 (307)
T 3end_A 259 TLFEMDEDQDVLAARAEYIRLAESLWRGLDP 289 (307)
T ss_dssp CTTTSCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CeEeeCCccccHHHHHHHHHHHHHHHhcCCC
Confidence 344 333 347788999999 7766544
No 218
>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*
Probab=30.62 E-value=1.1e+02 Score=30.22 Aligned_cols=80 Identities=21% Similarity=0.177 Sum_probs=51.7
Q ss_pred CCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHH
Q 010734 259 PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVR 338 (502)
Q Consensus 259 P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~ 338 (502)
-|.+-+|.-+.+||-. . .++-.+++.++.+-+ . |.|+=|.|-. .-=|++|+....
T Consensus 125 AdEIDmViNig~lk~g--~----------~~~v~~eI~~v~~a~-----------~-~~~lKVIlEt-~~Lt~eei~~A~ 179 (260)
T 3r12_A 125 ADEIDMVINVGMLKAK--E----------WEYVYEDIRSVVESV-----------K-GKVVKVIIET-CYLDTEEKIAAC 179 (260)
T ss_dssp CSEEEEECCHHHHHTT--C----------HHHHHHHHHHHHHHT-----------T-TSEEEEECCG-GGCCHHHHHHHH
T ss_pred CCEEEEEeehhhhccc--c----------HHHHHHHHHHHHHhc-----------C-CCcEEEEEeC-CCCCHHHHHHHH
Confidence 4667888888888732 1 222233444443322 1 5666666653 112679999999
Q ss_pred HHHHHcCCCeEEEcCccccCccchh
Q 010734 339 NAAMAAGAFDAVVCSHHAHGGKGAV 363 (502)
Q Consensus 339 ~~c~~~Gv~~~~vs~~wakGGeGa~ 363 (502)
+.|.++|+..+-.|+.|..||.--.
T Consensus 180 ~ia~eaGADfVKTSTGf~~~GAT~e 204 (260)
T 3r12_A 180 VISKLAGAHFVKTSTGFGTGGATAE 204 (260)
T ss_dssp HHHHHTTCSEEECCCSSSSCCCCHH
T ss_pred HHHHHhCcCEEEcCCCCCCCCCCHH
Confidence 9999999987778888987775433
No 219
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=30.19 E-value=79 Score=30.55 Aligned_cols=50 Identities=12% Similarity=0.029 Sum_probs=33.6
Q ss_pred hhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcC
Q 010734 303 VNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCS 353 (502)
Q Consensus 303 ~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~ 353 (502)
....+-|+.+++.|+++.+-.--.+..+++|+..+.+++++.|+. +...+
T Consensus 146 ~~v~~~i~~l~~~g~~v~i~~vv~~g~n~~ei~~~~~~~~~~g~~-~~~i~ 195 (340)
T 1tv8_A 146 TTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIE-IRFIE 195 (340)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECTTTTGGGHHHHHHHHHHTTCC-EEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEeCCCCHHHHHHHHHHHHhcCCe-EEEEE
Confidence 344444556667788665444345555778999999999999995 54443
No 220
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=30.02 E-value=1.7e+02 Score=25.19 Aligned_cols=63 Identities=17% Similarity=0.110 Sum_probs=40.8
Q ss_pred HhhcCCcEEEEecCCCCCCHHH----HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 312 TKAYGANVVVAVNMFATDSKAE----LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 312 i~~fGvPvVVAINrF~tDT~~E----i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
++.+++|++++.|+...-+..| ++.+++++.+.+.. ...-..=+.=|+|-.+|-+.+.+.+.+
T Consensus 133 ~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 133 AVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGD-VQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp HHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSC-EEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred HHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCC-CceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 3468999999999976655543 45666666655432 212222345678888888888877654
No 221
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=29.92 E-value=85 Score=27.23 Aligned_cols=57 Identities=14% Similarity=-0.002 Sum_probs=33.2
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHH-----HcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 315 YGANVVVAVNMFATDSKAELNAVRNAAM-----AAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~Ei~~v~~~c~-----~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
.++|+|+++|+-.-..+.+.+.+.+... +.++ .+-+.=++-|+|-.+|-+.+++.+.
T Consensus 129 ~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~---~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 129 RDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTW---YVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp TTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCE---EEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred CCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCce---EEEECcCCCcCCHHHHHHHHHHHHh
Confidence 4899999999975433322222222211 1122 2223345678898888888877663
No 222
>1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1
Probab=29.64 E-value=95 Score=31.04 Aligned_cols=94 Identities=14% Similarity=0.032 Sum_probs=64.5
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHH-------HHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCC
Q 010734 305 LARHIANTKAYGANVVVAVNMFATDSKAELNAV-------RNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVT 377 (502)
Q Consensus 305 L~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v-------~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~ 377 (502)
|++-|+..++|||+| |+..|--|+.+. .++|++.|...+.+|+.+-+=. -.++.+.|-++. +
T Consensus 82 l~ekI~l~~~~gV~v------~~GGTlfE~~l~qg~~~~yl~~~k~lGF~~IEISdGti~l~--~~~~~~lI~~a~---~ 150 (276)
T 1u83_A 82 LEEKISTLKEHDITF------FFGGTLFEKYVSQKKVNEFHRYCTYFGCEYIEISNGTLPMT--NKEKAAYIADFS---D 150 (276)
T ss_dssp HHHHHHHHHHTTCEE------EECHHHHHHHHHTTCHHHHHHHHHHTTCSEEEECCSSSCCC--HHHHHHHHHHHT---T
T ss_pred HHHHHHHHHHcCCeE------eCCcHHHHHHHHcCcHHHHHHHHHHcCCCEEEECCCcccCC--HHHHHHHHHHHH---h
Confidence 788899999999998 467777776544 6799999998888887665522 223333333332 2
Q ss_pred CCccccCC---------CCCCHHHHHHHHHH--HhCCCceeeCH
Q 010734 378 QPLKFLYP---------LDVSIKEKIDTIAR--SYGASGVEYSE 410 (502)
Q Consensus 378 ~~fk~LY~---------~~~sI~eKIe~IA~--IYGA~~V~fS~ 410 (502)
. |+.+.+ ...++.+.|+.+.+ =-||+.|....
T Consensus 151 ~-f~Vl~EvG~K~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa 193 (276)
T 1u83_A 151 E-FLVLSEVGSKDAELASRQSSEEWLEYIVEDMEAGAEKVITEA 193 (276)
T ss_dssp T-SEEEEECSCCC------CCSTHHHHHHHHHHHHTEEEEEEC-
T ss_pred h-cEEeeeccccCccccCCCCHHHHHHHHHHHHHCCCcEEEEee
Confidence 3 777763 23567888999988 77888887654
No 223
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A
Probab=29.37 E-value=1.6e+02 Score=28.25 Aligned_cols=91 Identities=12% Similarity=0.107 Sum_probs=53.5
Q ss_pred HHHHhhcCCcEEEEecCCCCC-------CHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCcc
Q 010734 309 IANTKAYGANVVVAVNMFATD-------SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLK 381 (502)
Q Consensus 309 IeNi~~fGvPvVVAINrF~tD-------T~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk 381 (502)
.+-.+++|+|+| +|-|+.. |++++....+.|.+.|+.-+.++ |. |..+.-+.+++.+.. ...+
T Consensus 131 ~~~~~~~~~~vI--i~~~~~G~~~~~~~s~~~i~~a~~~a~~~GAD~vkt~--~~----~~~e~~~~~~~~~~~--~pV~ 200 (263)
T 1w8s_A 131 KRDAVKFDLPLV--VESFPRGGKVVNETAPEIVAYAARIALELGADAMKIK--YT----GDPKTFSWAVKVAGK--VPVL 200 (263)
T ss_dssp HHHHHHHTCCEE--EEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEEEEE--CC----SSHHHHHHHHHHTTT--SCEE
T ss_pred HHHHHHcCCeEE--EEeeCCCCccccCCCHHHHHHHHHHHHHcCCCEEEEc--CC----CCHHHHHHHHHhCCC--CeEE
Confidence 444567999975 5776621 67888888888999999644444 53 245555566655521 0122
Q ss_pred ccCCCCC-CHHHHHHHHHH--HhCCCceeeC
Q 010734 382 FLYPLDV-SIKEKIDTIAR--SYGASGVEYS 409 (502)
Q Consensus 382 ~LY~~~~-sI~eKIe~IA~--IYGA~~V~fS 409 (502)
-.=-... +.++=++.|.. -.||+++...
T Consensus 201 asGGi~~~~~~~~l~~i~~~~~aGA~Gvsvg 231 (263)
T 1w8s_A 201 MSGGPKTKTEEDFLKQVEGVLEAGALGIAVG 231 (263)
T ss_dssp EECCSCCSSHHHHHHHHHHHHHTTCCEEEES
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 2212222 56665556644 4688877744
No 224
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=29.19 E-value=69 Score=27.22 Aligned_cols=55 Identities=9% Similarity=-0.056 Sum_probs=30.9
Q ss_pred hcCCcEEEEecCCCCCCHHHHHHHHHHHH-----HcCCCeEEEcCccccCccchhHHHHHHHH
Q 010734 314 AYGANVVVAVNMFATDSKAELNAVRNAAM-----AAGAFDAVVCSHHAHGGKGAVDLGIAVQR 371 (502)
Q Consensus 314 ~fGvPvVVAINrF~tDT~~Ei~~v~~~c~-----~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~ 371 (502)
..++|+|+++|+..-..+.+.+.+.++.. +.++ .+-+.=++-|+|-.+|-+.+++
T Consensus 120 ~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~---~~~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 120 LRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQW---HIQACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp GTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE---EEEECBTTTTBTHHHHHHHHHT
T ss_pred hCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCce---EEEEccCCCCcCHHHHHHHHHh
Confidence 36899999999975433222223333321 1232 2233346778887777666543
No 225
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=29.05 E-value=53 Score=30.91 Aligned_cols=67 Identities=7% Similarity=-0.036 Sum_probs=40.0
Q ss_pred HHHhhcCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccC---ccchhHHHHHHHHHhhcC
Q 010734 310 ANTKAYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHG---GKGAVDLGIAVQRACENV 376 (502)
Q Consensus 310 eNi~~fGvPvVVAINrF~tDT~~E--i~~v~~~c~~~Gv~~~~vs~~wakG---GeGa~eLA~~Vv~a~e~~ 376 (502)
+.++..+.|+|+++|+..--.+.+ .+.+.+.....+...+.++..-+.+ |.|-.+|-+.+.+.....
T Consensus 192 ~~~~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~ 263 (315)
T 1jwy_B 192 KEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNH 263 (315)
T ss_dssp HHHCSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred HHhCCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCC
Confidence 345568999999999976433222 3333221111112224455555556 888889988888887653
No 226
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=28.95 E-value=1.1e+02 Score=26.45 Aligned_cols=66 Identities=12% Similarity=-0.023 Sum_probs=36.1
Q ss_pred HhhHHHHHHHHh--hcCCcEEEEecCCCCCC-------HHHH--HHHHHHHH----HcCCCeEEEcCccccCccchhHHH
Q 010734 302 CVNLARHIANTK--AYGANVVVAVNMFATDS-------KAEL--NAVRNAAM----AAGAFDAVVCSHHAHGGKGAVDLG 366 (502)
Q Consensus 302 ~~NL~kHIeNi~--~fGvPvVVAINrF~tDT-------~~Ei--~~v~~~c~----~~Gv~~~~vs~~wakGGeGa~eLA 366 (502)
+.++.+.++.++ .-++|+|++.|+..--. ..++ +...++++ +.++. +..+.... +|-.++-
T Consensus 113 ~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~e~Sa~~---~~v~~~f 188 (196)
T 3llu_A 113 LTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLS-FYLTSIYD---HSIFEAF 188 (196)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEE-EEEECTTS---THHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcc-eEEEEech---hhHHHHH
Confidence 344555555543 35899999999975322 2222 12344555 45653 44444433 6666666
Q ss_pred HHHHH
Q 010734 367 IAVQR 371 (502)
Q Consensus 367 ~~Vv~ 371 (502)
+.+++
T Consensus 189 ~~l~~ 193 (196)
T 3llu_A 189 SKVVQ 193 (196)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 227
>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*
Probab=28.89 E-value=1.3e+02 Score=31.85 Aligned_cols=42 Identities=21% Similarity=0.147 Sum_probs=32.2
Q ss_pred hhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeE
Q 010734 303 VNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDA 349 (502)
Q Consensus 303 ~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~ 349 (502)
.|++.-.+-+++||+|+|+--| ..+.+..+.+.+.++|+.+.
T Consensus 188 dn~e~m~~lAa~y~~pVi~~~~-----dl~~lkelv~~a~~~GI~~I 229 (446)
T 4djd_C 188 ANYEAMTALAKENNCPLAVYGN-----GLEELAELVDKIVALGHKQL 229 (446)
T ss_dssp TTHHHHHHHHHHTTCCEEEECS-----SHHHHHHHHHHHHHTTCCCE
T ss_pred hhHHHHHHHHHHcCCcEEEEec-----cHHHHHHHHHHHHHCCCCcE
Confidence 3555566677889999999766 56788888888999999533
No 228
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=28.69 E-value=50 Score=23.19 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=19.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC
Q 010734 326 FATDSKAELNAVRNAAMAAGAF 347 (502)
Q Consensus 326 F~tDT~~Ei~~v~~~c~~~Gv~ 347 (502)
|..-|+||+..+++.+++++++
T Consensus 9 wvggtpeelkklkeeakkanir 30 (36)
T 2ki0_A 9 WVGGTPEELKKLKEEAKKANIR 30 (36)
T ss_dssp CBCCCHHHHHHHHHHHHHHCCC
T ss_pred EecCCHHHHHHHHHHHHhccEE
Confidence 5678999999999999999885
No 229
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=28.62 E-value=75 Score=27.27 Aligned_cols=57 Identities=9% Similarity=-0.109 Sum_probs=33.5
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHH-----HcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 315 YGANVVVAVNMFATDSKAELNAVRNAAM-----AAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~Ei~~v~~~c~-----~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
.++|+|+++|+..-..+.+.+.+.+... ..+. .+-+.=++-|+|-.+|-+.+++.+.
T Consensus 123 ~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~---~~~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 123 QGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREI---CCYSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp TTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE---EEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred CCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCe---eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 6899999999975432211222222211 1122 2234446778998888888877664
No 230
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=28.54 E-value=1.5e+02 Score=28.64 Aligned_cols=62 Identities=10% Similarity=0.015 Sum_probs=38.1
Q ss_pred HHHhhc--CCcEEEEecCCCCCCHHHHHHHHHHHHHc-CCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 310 ANTKAY--GANVVVAVNMFATDSKAELNAVRNAAMAA-GAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 310 eNi~~f--GvPvVVAINrF~tDT~~Ei~~v~~~c~~~-Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
+.++++ ++|+++++|+-...++++ + +.+.+++. +... +-..=++=|+|-.+|-+.+.+.+.+
T Consensus 109 ~~l~~~~~~~p~ilV~NK~Dl~~~~~-~-~~~~~~~~~~~~~--~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 109 RALKPLVGKVPILLVGNKLDAAKYPE-E-AMKAYHELLPEAE--PRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp HHHGGGTTTSCEEEEEECGGGCSSHH-H-HHHHHHHTSTTSE--EEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred HHHHhhcCCCCEEEEEECcccCCchH-H-HHHHHHHhcCcCc--EEEEeCCCCCCHHHHHHHHHHhccc
Confidence 456666 899999999976554444 0 23333333 3222 2233466788888888887776543
No 231
>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}
Probab=28.46 E-value=1.2e+02 Score=27.84 Aligned_cols=85 Identities=16% Similarity=0.109 Sum_probs=50.9
Q ss_pred cHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHH---HHHH-HcCCCeEEEcCccccCcc-c-hhHHHH
Q 010734 294 NVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVR---NAAM-AAGAFDAVVCSHHAHGGK-G-AVDLGI 367 (502)
Q Consensus 294 Nl~AL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~---~~c~-~~Gv~~~~vs~~wakGGe-G-a~eLA~ 367 (502)
|-+..++.+..++++|+-.+.+|.++||.-=-+. +.+.-++.++ +.++ +.|+. .++-+++..|.. + ..+-+.
T Consensus 79 ~~~~r~~~~~~~~~~i~~a~~lGa~~vv~h~g~~-~~~~~~~~l~~l~~~a~~~~gv~-l~lEn~~~~~~~~~~~~~~~~ 156 (270)
T 3aam_A 79 EGELWEKSVASLADDLEKAALLGVEYVVVHPGSG-RPERVKEGALKALRLAGVRSRPV-LLVENTAGGGEKVGARFEELA 156 (270)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHTCCEEEECCCBS-CHHHHHHHHHHHHHHHTCCSSSE-EEEECCCCCTTBSCCSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCC-CHHHHHHHHHHHHHhhcccCCCE-EEEecCCCCCCccCCCHHHHH
Confidence 3345678889999999999999999987532222 1133334444 4444 46884 888888655443 2 333333
Q ss_pred HHHHHhhcCCCCccccCC
Q 010734 368 AVQRACENVTQPLKFLYP 385 (502)
Q Consensus 368 ~Vv~a~e~~~~~fk~LY~ 385 (502)
.+++.+ ++.+.||
T Consensus 157 ~l~~~v-----~vg~~lD 169 (270)
T 3aam_A 157 WLVADT-----PLQVCLD 169 (270)
T ss_dssp HHHTTS-----SCEEEEE
T ss_pred HHHHhC-----CEEEEEe
Confidence 444333 4566654
No 232
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=28.44 E-value=65 Score=27.96 Aligned_cols=57 Identities=11% Similarity=-0.061 Sum_probs=29.6
Q ss_pred hcCCcEEEEecCCCCCCHHHHHHHHHHHHHcC---------CCeEEEcCccccCccchhHHHHHHH
Q 010734 314 AYGANVVVAVNMFATDSKAELNAVRNAAMAAG---------AFDAVVCSHHAHGGKGAVDLGIAVQ 370 (502)
Q Consensus 314 ~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~G---------v~~~~vs~~wakGGeGa~eLA~~Vv 370 (502)
..+.|+|++.|+-.-..+...+.+++++.... ...+.+-+.=++=|+|-.+|-+.++
T Consensus 122 ~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 187 (190)
T 1m2o_B 122 LKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 187 (190)
T ss_dssp GTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred hcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHH
Confidence 36899999999964432111223444443211 0112222333566777777666554
No 233
>2r32_A GCN4-PII/tumor necrosis factor ligand superfamily member 18 fusion protein; gitrl, glucocorticoid-induced TNF receptor ligand, cytokine; 1.95A {Saccharomyces cerevisiae} SCOP: b.22.1.1 PDB: 1ce0_A 3f86_A* 3f87_A*
Probab=28.41 E-value=70 Score=29.63 Aligned_cols=41 Identities=29% Similarity=0.295 Sum_probs=28.1
Q ss_pred CHHHHHHHHHH-HhCCCceeeCHHHHHHHHHHHHCCCCCCC----eeEeecCCCCC
Q 010734 389 SIKEKIDTIAR-SYGASGVEYSEEAEKQIEMYTGQGFSGLP----ICMAKTQYSFS 439 (502)
Q Consensus 389 sI~eKIe~IA~-IYGA~~V~fS~~A~kqLk~ie~~Gf~~LP----VCmAKTqySlS 439 (502)
-|++|||.|.. ||. .+.++++++++ .+.|| -||||---+.|
T Consensus 11 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~ta~e~c~~kf~~l~s 56 (166)
T 2r32_A 11 QIEDKIEEILSKIYH---------IENEIARIKKL-IGERETAKEPCMAKFGPLPS 56 (166)
T ss_dssp HHHHHHHHHHHHHHH---------HHHHHHHHHHC----------CCEEEECSTTC
T ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHH-hccccccccchhhhcCcCch
Confidence 48999999999 996 46788888887 45555 49988654444
No 234
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=28.24 E-value=56 Score=28.37 Aligned_cols=85 Identities=8% Similarity=0.030 Sum_probs=47.2
Q ss_pred CCCCeEEeeccccccccchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHH
Q 010734 227 GPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLA 306 (502)
Q Consensus 227 ~~~dyvVTEAGFgaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~ 306 (502)
...||||-+.+-+.+-.....+ +. -|.+|+|++-. . .. .+...+.
T Consensus 74 ~~yD~viiD~~~~~~~~~~~~l----~~----ad~viiv~~~~-------------------~------~~--~~~~~~~ 118 (206)
T 4dzz_A 74 ADYDFAIVDGAGSLSVITSAAV----MV----SDLVIIPVTPS-------------------P------LD--FSAAGSV 118 (206)
T ss_dssp TTSSEEEEECCSSSSHHHHHHH----HH----CSEEEEEECSC-------------------T------TT--HHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH----HH----CCEEEEEecCC-------------------H------HH--HHHHHHH
Confidence 3459999998766533222222 11 46677777621 0 11 1233444
Q ss_pred HHHHHHhh--cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010734 307 RHIANTKA--YGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 347 (502)
Q Consensus 307 kHIeNi~~--fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~ 347 (502)
+.++.++. -++++-|.+|++...+. ..+.+++++++.|..
T Consensus 119 ~~l~~~~~~~~~~~~~vv~N~~~~~~~-~~~~~~~~l~~~~~~ 160 (206)
T 4dzz_A 119 VTVLEAQAYSRKVEARFLITRKIEMAT-MLNVLKESIKDTGVK 160 (206)
T ss_dssp HHHHTTSCGGGCCEEEEEECSBCTTEE-EEHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCCCCcEEEEEeccCCCch-HHHHHHHHHHHcCCc
Confidence 44444442 35788999999987653 222345666667764
No 235
>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A
Probab=27.73 E-value=78 Score=30.55 Aligned_cols=80 Identities=18% Similarity=0.107 Sum_probs=51.0
Q ss_pred CCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecC-CCC--CCHHHHH
Q 010734 259 PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNM-FAT--DSKAELN 335 (502)
Q Consensus 259 P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAINr-F~t--DT~~Ei~ 335 (502)
-|.+-+|.-+.+||-. . .++-.+++.++.+-+. |.|+=|.|-. +-. -|++|+.
T Consensus 94 AdEIDmVinig~lk~g--~----------~~~v~~ei~~v~~a~~------------~~~lKvIiEt~~L~~~~t~eei~ 149 (231)
T 3ndo_A 94 ATEIDMVIDVGAALAG--D----------LDAVSADITAVRKAVR------------AATLKVIVESAALLEFSGEPLLA 149 (231)
T ss_dssp CSEEEEECCHHHHHTT--C----------HHHHHHHHHHHHHHTT------------TSEEEEECCHHHHHHHTCHHHHH
T ss_pred CCEEEEEeehHhhhcc--c----------HHHHHHHHHHHHHHcc------------CCceEEEEECcccCCCCCHHHHH
Confidence 4667777788877732 1 2222334444443331 5566555543 112 2889999
Q ss_pred HHHHHHHHcCCCeEEEcCccc-cCccch
Q 010734 336 AVRNAAMAAGAFDAVVCSHHA-HGGKGA 362 (502)
Q Consensus 336 ~v~~~c~~~Gv~~~~vs~~wa-kGGeGa 362 (502)
...+.|.++|+..+-.|+.|. .||.--
T Consensus 150 ~a~~ia~~aGADfVKTSTGf~~~~gAt~ 177 (231)
T 3ndo_A 150 DVCRVARDAGADFVKTSTGFHPSGGASV 177 (231)
T ss_dssp HHHHHHHHTTCSEEECCCSCCTTCSCCH
T ss_pred HHHHHHHHHCcCEEEcCCCCCCCCCCCH
Confidence 999999999998777788897 777654
No 236
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=27.59 E-value=1.2e+02 Score=30.80 Aligned_cols=60 Identities=13% Similarity=0.154 Sum_probs=38.1
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCHHH---HHHHHHHHHHcCCCeEEEcCccccCccchhHHHH
Q 010734 305 LARHIANTKAYGANVVVAVNMFATDSKAE---LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGI 367 (502)
Q Consensus 305 L~kHIeNi~~fGvPvVVAINrF~tDT~~E---i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~ 367 (502)
|.|.+-.....|+|+|+++|+-.--++++ ++.+.+.-++.|+. +...+ +.-|+|-.+|-.
T Consensus 149 i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~-v~~~S--a~~~~gl~~L~~ 211 (358)
T 2rcn_A 149 IDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYR-VLMVS--SHTQDGLKPLEE 211 (358)
T ss_dssp HHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCC-EEECB--TTTTBTHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCc-EEEEe--cCCCcCHHHHHH
Confidence 45566666778999999999976555555 44444455568986 44332 344666555543
No 237
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=27.45 E-value=62 Score=33.31 Aligned_cols=57 Identities=19% Similarity=0.209 Sum_probs=35.6
Q ss_pred hHHHHHHHHhhcCCc-EEEEecCCCCC--CHHHHH----HHHHHHHHcCC----CeEEEcCccccCccch
Q 010734 304 NLARHIANTKAYGAN-VVVAVNMFATD--SKAELN----AVRNAAMAAGA----FDAVVCSHHAHGGKGA 362 (502)
Q Consensus 304 NL~kHIeNi~~fGvP-vVVAINrF~tD--T~~Ei~----~v~~~c~~~Gv----~~~~vs~~wakGGeGa 362 (502)
...+|+..++..|+| +||++|+-.-- ++++++ .+++++++.|. ..+..+.. .=|+|-
T Consensus 132 qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA--~~g~nv 199 (458)
T 1f60_A 132 QTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISG--WNGDNM 199 (458)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCT--TTCBTT
T ss_pred hHHHHHHHHHHcCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeec--ccCcCc
Confidence 556788888889997 89999996542 444443 35555666663 12444443 335554
No 238
>3tl8_B Effector protein hopab2; plant immunity, solanum lycopersicum, triggered immunity, bacterial pathogenesis, transferase-LIG complex; HET: TPO; 2.50A {Pseudomonas syringae PV}
Probab=27.32 E-value=62 Score=28.43 Aligned_cols=39 Identities=13% Similarity=0.159 Sum_probs=32.5
Q ss_pred HHHHHHhhhhcccCcChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHH
Q 010734 22 LAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPE 80 (502)
Q Consensus 22 laA~idn~i~~~n~~~~~~~~~~l~p~~~~g~r~~~~~~~~r~~~l~~~~~~p~~~~~~ 80 (502)
|-+++++||.|.. -++...-+.|+-.||.+..++++|.-
T Consensus 57 LraAle~~im~~~--------------------piP~Di~raL~~VGI~P~id~~~SLv 95 (117)
T 3tl8_B 57 LRTALERHVMQRL--------------------PIPLDIGSALQNVGINPSIDLGESLV 95 (117)
T ss_dssp HHHHHHHHHTTCC--------------------CCCHHHHHHHHHTTCCCCCCCCSCBS
T ss_pred HHHHHHHHHHhcC--------------------CCCHHHHHHHHhCCCCCCCcchHHHh
Confidence 6788999999875 36778889999999999998887654
No 239
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=27.24 E-value=4.6e+02 Score=25.80 Aligned_cols=155 Identities=17% Similarity=0.233 Sum_probs=94.3
Q ss_pred cccchhccccccccCCCCCCeEEEEeeehhhhhc-CCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcE
Q 010734 241 DIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMH-GGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANV 319 (502)
Q Consensus 241 DlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~H-GG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPv 319 (502)
+-|.||+++---|..++.||.+-| | |+ ||... . ..+ .+-++|+ .+|+++
T Consensus 25 ~~~~~~l~~~~~~L~~~~pd~vsV--T-----~~~~g~~r-------------~--~t~-----~~a~~i~---~~g~~~ 74 (310)
T 3apt_A 25 PEGEEALFRTLEELKAFRPAFVSI--T-----YGAMGSTR-------------E--RSV-----AWAQRIQ---SLGLNP 74 (310)
T ss_dssp HHHHHHHHHHHHHHGGGCCSEEEE--C-----CCSTTCSH-------------H--HHH-----HHHHHHH---HTTCCB
T ss_pred cchHHHHHHHHHHHhcCCCCEEEE--e-----cCCCCCcc-------------h--hHH-----HHHHHHH---HhCCCe
Confidence 345788888777888999999655 3 32 44321 1 111 1334444 689999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHcCCCeEE-EcCccccC-c---------cchhHHHHHHHHHhhcCCCCcc---ccCC
Q 010734 320 VVAVNMFATDSKAELNAVRNAAMAAGAFDAV-VCSHHAHG-G---------KGAVDLGIAVQRACENVTQPLK---FLYP 385 (502)
Q Consensus 320 VVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~-vs~~wakG-G---------eGa~eLA~~Vv~a~e~~~~~fk---~LY~ 385 (502)
|.=+---. -|.+|++.+...+.++|++.+. +.--..+| | +=+.+|-+.+-+.- + ..|. -.|+
T Consensus 75 i~Hltc~~-~~~~~l~~~L~~~~~~GI~niLaLrGD~p~~~g~~~~~~~~f~~a~~Lv~~ir~~~--g-~~f~igvA~yP 150 (310)
T 3apt_A 75 LAHLTVAG-QSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAAELVALIRERY--G-DRVSVGGAAYP 150 (310)
T ss_dssp CEEEECTT-SCHHHHHHHHHHHHHTTCCEEEEECCCCSTTCCSCCCCTTSCSSHHHHHHHHHHHH--G-GGSEEEEEECT
T ss_pred EEEeecCC-CCHHHHHHHHHHHHHCCCCEEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhC--C-CCeEEEEEeCC
Confidence 88776544 6789999998889999997543 33333333 2 12445554433321 1 2244 3676
Q ss_pred ----CCCCHHHHHHHHHH--HhCCCcee----eCHHHHHHH-HHHHHCCCCCCCee
Q 010734 386 ----LDVSIKEKIDTIAR--SYGASGVE----YSEEAEKQI-EMYTGQGFSGLPIC 430 (502)
Q Consensus 386 ----~~~sI~eKIe~IA~--IYGA~~V~----fS~~A~kqL-k~ie~~Gf~~LPVC 430 (502)
...+.+.-++.+.+ --||+-+. |+.+.-.++ +++++.|.+ .||-
T Consensus 151 E~Hp~~~~~~~d~~~Lk~Kv~aGAdf~iTQ~ffD~~~~~~f~~~~r~~Gi~-vPIi 205 (310)
T 3apt_A 151 EGHPESESLEADLRHFKAKVEAGLDFAITQLFFNNAHYFGFLERARRAGIG-IPIL 205 (310)
T ss_dssp TCCTTSSCHHHHHHHHHHHHHHHCSEEEECCCSCHHHHHHHHHHHHHTTCC-SCEE
T ss_pred CcCCCCCCHHHHHHHHHHHHHcCCCEEEecccCCHHHHHHHHHHHHHcCCC-CeEE
Confidence 44567666666665 57888554 887776654 456677875 7874
No 240
>4acy_A Endo-alpha-mannosidase; hydrolase, endomannosidase, glycoside hydrolase, CAZY, enzyme-carbohydrate interaction, mannose; HET: MSE; 1.69A {Bacteroides thetaiotaomicron} PDB: 4acz_A 4ad0_A* 4acz_B
Probab=27.20 E-value=80 Score=32.46 Aligned_cols=69 Identities=13% Similarity=0.168 Sum_probs=49.3
Q ss_pred hhHHHHHHHHhhcCCcEEEEecCCCC--CCHHHHHHHHHHHHHcCCCeEEEcC-ccccCccchhHHHHHHHHHhhc
Q 010734 303 VNLARHIANTKAYGANVVVAVNMFAT--DSKAELNAVRNAAMAAGAFDAVVCS-HHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 303 ~NL~kHIeNi~~fGvPvVVAINrF~t--DT~~Ei~~v~~~c~~~Gv~~~~vs~-~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
.-+++||+-+|.+||-+ +++|.|.. -++.-++.+.+.+++.|.. +..+= .| +|.....+.+.|...+++
T Consensus 103 ~v~~~hi~~ak~aGIDg-fal~w~~~~~~~d~~l~~~~~aA~~~g~k-~~f~~~~y--~~~~~~~~~~dv~~li~~ 174 (382)
T 4acy_A 103 EIIRKHIRMHIKANVGV-LSVTWWGESDYGNQSVSLLLDEAAKVGAK-VCFHIEPF--NGRSPQTVRENIQYIVDT 174 (382)
T ss_dssp HHHHHHHHHHHHHTEEE-EEEEECGGGGTTCHHHHHHHHHHHHHTCE-EEEEECCC--TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCE-EEEEecCCCCchHHHHHHHHHHHHHcCCE-EEEEeecC--CCCChHHHHHHHHHHHHH
Confidence 35889999999999986 46898853 3456788899999999984 65532 23 344455677777777653
No 241
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=27.01 E-value=1.4e+02 Score=33.37 Aligned_cols=103 Identities=13% Similarity=0.067 Sum_probs=62.2
Q ss_pred HhhHHHHHHHHhhcCCcEEEEecCCC--CC------CHHHHHHHHHHHHHcCCCeEEEcCccccCc-cchhHHHHHHHHH
Q 010734 302 CVNLARHIANTKAYGANVVVAVNMFA--TD------SKAELNAVRNAAMAAGAFDAVVCSHHAHGG-KGAVDLGIAVQRA 372 (502)
Q Consensus 302 ~~NL~kHIeNi~~fGvPvVVAINrF~--tD------T~~Ei~~v~~~c~~~Gv~~~~vs~~wakGG-eGa~eLA~~Vv~a 372 (502)
+.|++++|+-+++.|..+.+++-.+. .| +.+.+-.+.+.+.++|+..+.+++.-.-.= +-..+|-+++.+.
T Consensus 223 l~~l~~~i~~ak~~G~~v~~~i~~~~d~~dp~r~~~~~e~~~~~a~~l~~~Ga~~I~l~DT~G~~~P~~v~~lV~~lk~~ 302 (718)
T 3bg3_A 223 LPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTKYSLQYYMGLAEELVRAGTHILCIKDMAGLLKPTACTMLVSSLRDR 302 (718)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEEECCSCTTCTTCCTTCHHHHHHHHHHHHHHTCSEEEEECTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEeeccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCcCCCcCHHHHHHHHHHHHHh
Confidence 57999999999999999999998772 23 566666667777789998788887532111 1122233333322
Q ss_pred hhcCCCCccccCCCCCCHHHHHHHHHH-HhCCCcee
Q 010734 373 CENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGVE 407 (502)
Q Consensus 373 ~e~~~~~fk~LY~~~~sI~eKIe~IA~-IYGA~~V~ 407 (502)
+..-+=.|+.=.+..+.+. +.+|- -.||+.|+
T Consensus 303 ~p~~~I~~H~Hnd~GlAvA---NslaAveAGa~~VD 335 (718)
T 3bg3_A 303 FPDLPLHIHTHDTSGAGVA---AMLACAQAGADVVD 335 (718)
T ss_dssp STTCCEEEECCCTTSCHHH---HHHHHHHTTCSEEE
T ss_pred CCCCeEEEEECCCccHHHH---HHHHHHHhCCCEEE
Confidence 2100112444445555553 45555 67777666
No 242
>1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A {Streptomyces olivochromogenes} SCOP: c.1.15.3 PDB: 1s5m_A* 1s5n_A* 2gyi_A* 1xyb_A* 1xyc_A* 1xya_A* 1xyl_A 1xym_A* 1dxi_A 3gnx_A* 1gw9_A* 1xib_A 1xic_A* 1xid_A* 1xie_A* 1xif_A* 1xig_A* 1xih_A* 1xii_A* 1xij_A ...
Probab=26.94 E-value=2e+02 Score=28.42 Aligned_cols=105 Identities=13% Similarity=0.091 Sum_probs=61.0
Q ss_pred cccHHHHHHHHhhHHHHHHHHhhcCCcEEEEe-cCC------CCCCHHH-------HHHHHHHHHHcC--CCeEEEcCcc
Q 010734 292 NENVALVEAGCVNLARHIANTKAYGANVVVAV-NMF------ATDSKAE-------LNAVRNAAMAAG--AFDAVVCSHH 355 (502)
Q Consensus 292 ~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAI-NrF------~tDT~~E-------i~~v~~~c~~~G--v~~~~vs~~w 355 (502)
.++-+.-++.+..+++.|+..+.+|.+.||.- ... ..|.++. +..+.+.+++.| +. +++-++.
T Consensus 105 ~~d~~~r~~~i~~~~~~i~~A~~LGa~~vvv~~g~~~~~~~~~~~~~~~~~~~~e~L~~l~~~A~~~G~~v~-l~lE~~~ 183 (386)
T 1muw_A 105 ANDRDVRRYALRKTIRNIDLAVELGAKTYVAWGGREGAESGAAKDVRVALDRMKEAFDLLGEYVTSQGYDIR-FAIEPKP 183 (386)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHTCSEEEECCTTCEESSTTSCCHHHHHHHHHHHHHHHHHHHHHHTCCCE-EEECCCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCeE-EEEeeCC
Confidence 45666678889999999999999999998863 221 2344333 345556677788 84 7776663
Q ss_pred cc--Ccc--chhHHHHHHHHHhhcCCCCccccCCC------CCCHHHHHHHHH
Q 010734 356 AH--GGK--GAVDLGIAVQRACENVTQPLKFLYPL------DVSIKEKIDTIA 398 (502)
Q Consensus 356 ak--GGe--Ga~eLA~~Vv~a~e~~~~~fk~LY~~------~~sI~eKIe~IA 398 (502)
.+ ++. ...+-+..+++.+.. ++.+..++|. ..++.+-|+...
T Consensus 184 ~e~~~~~~~~t~~~~~~li~~v~~-pn~vgl~lD~~H~~~~g~d~~~~l~~~~ 235 (386)
T 1muw_A 184 NEPRGDILLPTVGHALAFIERLER-PELYGVNPEVGHEQMAGLNFPHGIAQAL 235 (386)
T ss_dssp SSSSSEESSCSHHHHHHHHTTSSS-GGGEEECCBHHHHHTTTCCHHHHHHHHH
T ss_pred CCCcccccCCCHHHHHHHHHHhCC-ccceEEEeeccchhhcCCCHHHHHHHhc
Confidence 21 111 122333444444432 1126666543 345555555553
No 243
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=26.91 E-value=3e+02 Score=25.74 Aligned_cols=116 Identities=12% Similarity=0.046 Sum_probs=71.8
Q ss_pred HHHHhhcCCcEEEEe----------------cCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHH
Q 010734 309 IANTKAYGANVVVAV----------------NMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 372 (502)
Q Consensus 309 IeNi~~fGvPvVVAI----------------NrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a 372 (502)
.+.++++++|+|..- -++..|...+...+.++..+.|.+++++-. ....-+.+.++.+.++
T Consensus 106 ~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~---~~~~~~~~~~~~~~~~ 182 (386)
T 3sg0_A 106 IDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIG---FSDAYGEGYYKVLAAA 182 (386)
T ss_dssp HHHHHHTTCCEEECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCCEEEEEE---ESSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCeEEEecCCCccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCCEEEEEe---cCchHHHHHHHHHHHH
Confidence 456778999998742 234567778888999999999998877652 2334456677777777
Q ss_pred hhcCCCC--ccccCCC-CCCHHHHHHHHHHHhCCCceee---CHHHHHHHHHHHHCCCCCCCe
Q 010734 373 CENVTQP--LKFLYPL-DVSIKEKIDTIARSYGASGVEY---SEEAEKQIEMYTGQGFSGLPI 429 (502)
Q Consensus 373 ~e~~~~~--fk~LY~~-~~sI~eKIe~IA~IYGA~~V~f---S~~A~kqLk~ie~~Gf~~LPV 429 (502)
+++..-+ ....|+. +.+...-++++.+ -+.+-|.+ ...+..-++++.++|+. .|+
T Consensus 183 l~~~g~~v~~~~~~~~~~~d~~~~~~~~~~-~~~dav~~~~~~~~a~~~~~~~~~~g~~-~~~ 243 (386)
T 3sg0_A 183 APKLGFELTTHEVYARSDASVTGQVLKIIA-TKPDAVFIASAGTPAVLPQKALRERGFK-GAI 243 (386)
T ss_dssp HHHHTCEECCCEEECTTCSCCHHHHHHHHH-TCCSEEEEECCSGGGHHHHHHHHHTTCC-SEE
T ss_pred HHHcCCEEEEEEeeCCCCCcHHHHHHHHHh-cCCCEEEEecCcchHHHHHHHHHHcCCC-CcE
Confidence 6642111 1223332 2344544555443 23343321 35677788899999996 565
No 244
>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*
Probab=26.35 E-value=1.9e+02 Score=27.38 Aligned_cols=127 Identities=18% Similarity=0.180 Sum_probs=78.7
Q ss_pred EEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhh------------------HHHHHHHHhhcCCcEEEEecC
Q 010734 264 IVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVN------------------LARHIANTKAYGANVVVAVNM 325 (502)
Q Consensus 264 lVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~N------------------L~kHIeNi~~fGvPvVVAINr 325 (502)
|+.|+|. +..||..... .++=++.++.++.. +.+-++..++.|..+|+.-=-
T Consensus 65 iI~T~R~-~~eGG~~~~~---------~~~~~~ll~~~~~~~~~d~iDvEl~~~~~~~~~~~l~~~~~~~~~kvI~S~Hd 134 (238)
T 1sfl_A 65 LLVTYRT-KLQGGYGQFT---------NDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHN 134 (238)
T ss_dssp EEEECCB-GGGTSCBCCC---------HHHHHHHHHHGGGCTTCCEEEEECCTTSCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred EEEEeec-cccCCCCCCC---------HHHHHHHHHHHHHhCCCCEEEEEccCCCChHHHHHHHHHHHhcCCEEEEEecC
Confidence 5679994 5788865311 12334556666532 334456677788988887655
Q ss_pred CC-CCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCCCCHHHHHHHHHH-HhCC
Q 010734 326 FA-TDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-SYGA 403 (502)
Q Consensus 326 F~-tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~-IYGA 403 (502)
|. +-+.+|+..+.+.+.+.|+. ++=--+.++.-+-...|-+...+. +... -.|+=-..|.-.-++..|+- +||.
T Consensus 135 f~~tp~~~el~~~~~~~~~~gaD-ivKia~~a~~~~D~l~ll~~~~~~-~~~~--~~P~I~~~MG~~G~~SRi~~~~~GS 210 (238)
T 1sfl_A 135 FESTPPLDELQFIFFKMQKFNPE-YVKLAVMPHNKNDVLNLLQAMSTF-SDTM--DCKVVGISMSKLGLISRTAQGVFGG 210 (238)
T ss_dssp SSCCCCHHHHHHHHHHHHTTCCS-EEEEEECCSSHHHHHHHHHHHHHH-HHHC--SSEEEEEECTGGGHHHHHTGGGGTB
T ss_pred CCCCcCHHHHHHHHHHHHHcCCC-EEEEEecCCCHHHHHHHHHHHHHH-hhcC--CCCEEEEECCCCchHHHHHHHHhCC
Confidence 53 44578988888888999974 544445566655555555554443 2211 13444456666778888888 8875
Q ss_pred C
Q 010734 404 S 404 (502)
Q Consensus 404 ~ 404 (502)
.
T Consensus 211 ~ 211 (238)
T 1sfl_A 211 A 211 (238)
T ss_dssp C
T ss_pred C
Confidence 4
No 245
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=26.03 E-value=1.7e+02 Score=28.29 Aligned_cols=105 Identities=13% Similarity=0.146 Sum_probs=65.7
Q ss_pred HHHHHhhHHHHHHHHhhcCCcEEEEec-CCC-----CCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 010734 298 VEAGCVNLARHIANTKAYGANVVVAVN-MFA-----TDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 371 (502)
Q Consensus 298 L~~G~~NL~kHIeNi~~fGvPvVVAIN-rF~-----tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~ 371 (502)
.+.-++...+.|+.+++.|++|.+.+= .|. .-+.+++..+.+.+.+.|+..+.+++.- | -..-+-...+++
T Consensus 116 ~~e~l~~~~~~i~~a~~~G~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~--G-~~~P~~~~~lv~ 192 (298)
T 2cw6_A 116 IEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEISLGDTI--G-VGTPGIMKDMLS 192 (298)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEETTTCBTTTBSCCHHHHHHHHHHHHHTTCSEEEEEETT--S-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCEEEecCCC--C-CcCHHHHHHHHH
Confidence 344566788889999999999887665 242 2256788888888889999888888764 3 333444444444
Q ss_pred HhhcC-CC---CccccCCCCCCHHHHHHHHHH-HhCCCceee
Q 010734 372 ACENV-TQ---PLKFLYPLDVSIKEKIDTIAR-SYGASGVEY 408 (502)
Q Consensus 372 a~e~~-~~---~fk~LY~~~~sI~eKIe~IA~-IYGA~~V~f 408 (502)
.+.+. +. .++.=.+..+.+. +.++- -.|++.|+-
T Consensus 193 ~l~~~~~~~~i~~H~Hn~~Gla~A---n~laA~~aGa~~vd~ 231 (298)
T 2cw6_A 193 AVMQEVPLAALAVHCHDTYGQALA---NTLMALQMGVSVVDS 231 (298)
T ss_dssp HHHHHSCGGGEEEEEBCTTSCHHH---HHHHHHHTTCCEEEE
T ss_pred HHHHhCCCCeEEEEECCCCchHHH---HHHHHHHhCCCEEEe
Confidence 44321 11 1444344445553 46666 788887653
No 246
>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus}
Probab=25.68 E-value=2.8e+02 Score=26.63 Aligned_cols=131 Identities=21% Similarity=0.173 Sum_probs=78.6
Q ss_pred EEeeehhhhhcCCCC-CccCCCCCchhcccccHHHHHHHH----------h-hHHHHHHHHhhcCCcEEEEecCCC-CCC
Q 010734 264 IVATIRALKMHGGGP-QVVAGKPLDHAYLNENVALVEAGC----------V-NLARHIANTKAYGANVVVAVNMFA-TDS 330 (502)
Q Consensus 264 lVaTvRALK~HGG~~-~~~~~~pl~~~l~~eNl~AL~~G~----------~-NL~kHIeNi~~fGvPvVVAINrF~-tDT 330 (502)
++.|+|. +..||.. ... ++++.+=...+++.|+ . .+.+-++..++.|..+|+.-=-|. +-+
T Consensus 81 iI~T~Rt-~~eGG~~~~~~-----~~~~~~ll~~~~~~g~~d~iDvEl~~~~~~~~l~~~~~~~~~kvI~S~Hdf~~tP~ 154 (257)
T 2yr1_A 81 ILFTIRS-EREGGQPIPLN-----EAEVRRLIEAICRSGAIDLVDYELAYGERIADVRRMTEECSVWLVVSRHYFDGTPR 154 (257)
T ss_dssp EEEECCC-TTTTCCCCSSC-----HHHHHHHHHHHHHHTCCSEEEEEGGGTTHHHHHHHHHHHTTCEEEEEEEESSCCCC
T ss_pred EEEEEee-cccCCCCCCCC-----HHHHHHHHHHHHHcCCCCEEEEECCCChhHHHHHHHHHhCCCEEEEEecCCCCCcC
Confidence 5679994 5788865 211 1222222233334341 0 233445666788998888765553 345
Q ss_pred HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCCCCHHHHHHHHHH-HhCCC
Q 010734 331 KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-SYGAS 404 (502)
Q Consensus 331 ~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~-IYGA~ 404 (502)
.+|+..+.+.+.+.|+. ++=--+.++.-+-...|-+...+. +..+. +|+=...|.-.-++..|+- +||..
T Consensus 155 ~~el~~~~~~~~~~gaD-ivKia~~a~s~~D~l~ll~~~~~~-~~~~~--~P~I~~~MG~~G~~SRi~~~~~GS~ 225 (257)
T 2yr1_A 155 KETLLADMRQAERYGAD-IAKVAVMPKSPEDVLVLLQATEEA-RRELA--IPLITMAMGGLGAITRLAGWLFGSA 225 (257)
T ss_dssp HHHHHHHHHHHHHTTCS-EEEEEECCSSHHHHHHHHHHHHHH-HHHCS--SCEEEEECTTTTHHHHHHGGGGTBC
T ss_pred HHHHHHHHHHHHhcCCC-EEEEEeccCCHHHHHHHHHHHHHH-hccCC--CCEEEEECCCCcchHHHHHHHhCCc
Confidence 68998888899999984 554455666666666666554443 22111 3444455666678999998 98753
No 247
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=25.64 E-value=99 Score=27.56 Aligned_cols=122 Identities=11% Similarity=0.063 Sum_probs=62.5
Q ss_pred CCCeEEeeccccccccchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHH
Q 010734 228 PGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLAR 307 (502)
Q Consensus 228 ~~dyvVTEAGFgaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~k 307 (502)
..||||-+.+-+.+......+ ..-|.+|+|++-. ... +..+.+
T Consensus 111 ~yD~viiD~~~~~~~~~~~~~--------~~ad~vi~v~~~~-------------------------~~~----~~~~~~ 153 (237)
T 1g3q_A 111 KFDFILIDCPAGLQLDAMSAM--------LSGEEALLVTNPE-------------------------ISC----LTDTMK 153 (237)
T ss_dssp GCSEEEEECCSSSSHHHHHHH--------TTCSEEEEEECSC-------------------------HHH----HHHHHH
T ss_pred cCCEEEEECCCCcCHHHHHHH--------HHCCeEEEEecCC-------------------------ccc----HHHHHH
Confidence 459999888766543332222 2357788887622 111 122333
Q ss_pred HHHHHhhcCCcE-EEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCC
Q 010734 308 HIANTKAYGANV-VVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPL 386 (502)
Q Consensus 308 HIeNi~~fGvPv-VVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~ 386 (502)
-++.+++.|++. -|.+|++...+.. +.+.+.++..|.. +. ...-. -..+.++...+ . .-+.|..
T Consensus 154 ~~~~l~~~~~~~~~vv~N~~~~~~~~--~~~~~~~~~~~~~-~~-~~Ip~---------~~~~~~a~~~g-~-~v~~~~~ 218 (237)
T 1g3q_A 154 VGIVLKKAGLAILGFVLNRYGRSDRD--IPPEAAEDVMEVP-LL-AVIPE---------DPAIREGTLEG-I-PAVKYKP 218 (237)
T ss_dssp HHHHHHHTTCEEEEEEEEEETSCTTC--CCHHHHHHHHCSC-EE-EEEEC---------CHHHHHHHHHT-S-CHHHHST
T ss_pred HHHHHHhCCCceEEEEEecCCcccch--hHHHHHHHHhCcc-ce-eeCCC---------ChHHHHHHHcC-C-CeEEeCC
Confidence 444555557654 4788999875543 2233334446764 32 11111 12333344332 1 1223455
Q ss_pred CCCHHHHHHHHHH-Hh
Q 010734 387 DVSIKEKIDTIAR-SY 401 (502)
Q Consensus 387 ~~sI~eKIe~IA~-IY 401 (502)
+.+...-++.+|+ +.
T Consensus 219 ~~~~~~~~~~la~~l~ 234 (237)
T 1g3q_A 219 ESKGAKAFVKLAEEIE 234 (237)
T ss_dssp TSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 5677777888887 64
No 248
>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*
Probab=25.61 E-value=2.8e+02 Score=27.02 Aligned_cols=136 Identities=16% Similarity=0.225 Sum_probs=83.1
Q ss_pred EEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHH--------h----hHHHHHHHHhhcCCcEEEEecCCC-CCC
Q 010734 264 IVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGC--------V----NLARHIANTKAYGANVVVAVNMFA-TDS 330 (502)
Q Consensus 264 lVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~--------~----NL~kHIeNi~~fGvPvVVAINrF~-tDT 330 (502)
|+.|+|. +..||....+ ++++.+=...+++.|+ . -+.+-++..++.|+.+|+.-=-|. +-+
T Consensus 101 iI~T~Rt-~~eGG~~~~~-----~~~~~~ll~~~l~~g~~dyIDvEl~~~~~~~~~l~~~a~~~~~kvI~S~Hdf~~tP~ 174 (276)
T 3o1n_A 101 LLFTFRS-AKEGGEQALT-----TGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPA 174 (276)
T ss_dssp EEEECCB-GGGTCSBCCC-----HHHHHHHHHHHHHHTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEEEEESSCCCC
T ss_pred EEEEEEE-hhhCCCCCCC-----HHHHHHHHHHHHhcCCCCEEEEECcCCHHHHHHHHHHHHhCCCEEEEEeecCCCCcC
Confidence 6779995 4678864211 1223332333444441 1 122333445788999988765564 556
Q ss_pred HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCCCCHHHHHHHHHH-HhCCCceeeC
Q 010734 331 KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYS 409 (502)
Q Consensus 331 ~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~-IYGA~~V~fS 409 (502)
.+|+..+.+.+.+.|+. ++=--+.++.-+-...|-+...+.-+..+. +|+=-..|.-.-++..|+- +||.. |+|.
T Consensus 175 ~~el~~~~~~~~~~GaD-IvKia~~a~s~~Dvl~Ll~~~~~~~~~~~~--~PlIa~~MG~~G~~SRi~~~~~GS~-vTf~ 250 (276)
T 3o1n_A 175 AEEIVQRLRKMQELGAD-IPKIAVMPQTKADVLTLLTATVEMQERYAD--RPIITMSMSKTGVISRLAGEVFGSA-ATFG 250 (276)
T ss_dssp HHHHHHHHHHHHHTTCS-EEEEEECCSSHHHHHHHHHHHHHHHHHTCC--SCCEEEECSGGGTHHHHCHHHHTCC-EEEC
T ss_pred HHHHHHHHHHHHHcCCC-EEEEEecCCChHHHHHHHHHHHHHHhcCCC--CCEEEEECCCchhhHHHHHHHhCCc-eEec
Confidence 78999888889999973 544446677777777777665554332111 3555556777788999998 88753 4443
No 249
>1u7n_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, enterococcus faecalis V583, PSI, protein structure initiative; HET: MSE; 2.26A {Enterococcus faecalis} SCOP: c.77.1.4
Probab=25.42 E-value=13 Score=37.23 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=22.7
Q ss_pred Eccccc-------chhcccCchHHHHHHHHHhc
Q 010734 201 VHAGPF-------ANIAHGNSSIVADKIALKLV 226 (502)
Q Consensus 201 vHgGPF-------ANIAhG~nSviAtk~alkla 226 (502)
-||||| .++.||.+|.-+-.-|+++|
T Consensus 283 ~~gga~llG~~~pvi~~~g~a~~~~i~~ai~~A 315 (336)
T 1u7n_A 283 KHGGAVLFGLKAPVIKTHGATGPDAVRYTIRQI 315 (336)
T ss_dssp GGCCEEEETBSSCEEECCTTCCHHHHHHHHHHH
T ss_pred ccccceeecCcCcEEEeCCCCCHHHHHHHHHHH
Confidence 599999 89999999998887777776
No 250
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=25.30 E-value=4.2e+02 Score=24.72 Aligned_cols=118 Identities=15% Similarity=0.137 Sum_probs=73.8
Q ss_pred HHHHhhcCCcEEEEe-----------c----CCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 010734 309 IANTKAYGANVVVAV-----------N----MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 373 (502)
Q Consensus 309 IeNi~~fGvPvVVAI-----------N----rF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~ 373 (502)
.+.++++++|+|..- + +...|...+...+.+++.+.|.+++++-. . ...-+.+.++.+.+++
T Consensus 99 ~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~--~-~~~~~~~~~~~~~~~l 175 (375)
T 4evq_A 99 VKIAREDGIPTIVPNAGADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKAVTVT--W-KYAAGEEMVSGFKKSF 175 (375)
T ss_dssp HHHHHHHCCCEEESSCCCGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEE--E-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCceEEecCCCChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCcEEEEEe--c-CchHHHHHHHHHHHHH
Confidence 455677899988642 1 23456677888889999999998877652 2 2344566777777777
Q ss_pred hcCCCCc--cccCCC-CCCHHHHHHHHHHHhCCCceee---CHHHHHHHHHHHHCCCCCCCeeE
Q 010734 374 ENVTQPL--KFLYPL-DVSIKEKIDTIARSYGASGVEY---SEEAEKQIEMYTGQGFSGLPICM 431 (502)
Q Consensus 374 e~~~~~f--k~LY~~-~~sI~eKIe~IA~IYGA~~V~f---S~~A~kqLk~ie~~Gf~~LPVCm 431 (502)
++..-++ ...|+. +.+...-++++.+ -+++-|.. ...|..-++++.++|+. .|+.-
T Consensus 176 ~~~G~~v~~~~~~~~~~~d~~~~~~~l~~-~~~dai~~~~~~~~a~~~~~~~~~~g~~-vp~~~ 237 (375)
T 4evq_A 176 TAGKGEVVKDITIAFPDVEFQSALAEIAS-LKPDCVYAFFSGGGALKFIKDYAAANLG-IPLWG 237 (375)
T ss_dssp HHTTCEEEEEEEECTTCCCCHHHHHHHHH-HCCSEEEEECCTHHHHHHHHHHHHTTCC-CCEEE
T ss_pred HHcCCeEEEEEecCCCCccHHHHHHHHHh-cCCCEEEEecCcchHHHHHHHHHHcCCC-ceEEe
Confidence 6421111 122332 2344444544433 24555543 57788889999999997 78754
No 251
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=25.18 E-value=3.5e+02 Score=24.96 Aligned_cols=86 Identities=19% Similarity=0.195 Sum_probs=44.6
Q ss_pred HHhhHHHHHHHHhhcCCc-EEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCC
Q 010734 301 GCVNLARHIANTKAYGAN-VVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQP 379 (502)
Q Consensus 301 G~~NL~kHIeNi~~fGvP-vVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~ 379 (502)
|-.=|++-++++++.|+. +||+.+ . +.|.+++.+.|+. +.....-..+|-|. ++ .+++.+.....+
T Consensus 26 GkPli~~~l~~l~~~~~~~ivVv~~-----~----~~i~~~~~~~g~~-v~~~~~~~~~Gt~~--~~-~~~~~l~~~~~d 92 (252)
T 3oam_A 26 GKPMIQWVYEQAMQAGADRVIIATD-----D----ERVEQAVQAFGGV-VCMTSPNHQSGTER--LA-EVVAKMAIPADH 92 (252)
T ss_dssp TEEHHHHHHHHHHHTTCSEEEEEES-----C----HHHHHHHHHTTCE-EEECCTTCCSHHHH--HH-HHHHHTTCCTTS
T ss_pred CEEHHHHHHHHHHhCCCCeEEEECC-----H----HHHHHHHHHcCCE-EEEcCCCCCCcHHH--HH-HHHHhcCcCCCC
Confidence 345577788899988864 566553 2 3456777788984 65443222344443 22 233333211122
Q ss_pred ccccCCCCCCH--HHHHHHHHH
Q 010734 380 LKFLYPLDVSI--KEKIDTIAR 399 (502)
Q Consensus 380 fk~LY~~~~sI--~eKIe~IA~ 399 (502)
.-....-|.|+ .+=|+.+..
T Consensus 93 ~vlv~~gD~Pli~~~~i~~l~~ 114 (252)
T 3oam_A 93 IVVNVQGDEPLIPPAIIRQVAD 114 (252)
T ss_dssp EEEECCTTCTTCCHHHHHHHHH
T ss_pred EEEEEeCCeeecCHHHHHHHHH
Confidence 23334445555 444555544
No 252
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=25.03 E-value=1.2e+02 Score=26.86 Aligned_cols=45 Identities=9% Similarity=-0.059 Sum_probs=30.0
Q ss_pred hhHHHHHHHHhhcCCcEE-EEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010734 303 VNLARHIANTKAYGANVV-VAVNMFATDSKAELNAVRNAAMAAGAF 347 (502)
Q Consensus 303 ~NL~kHIeNi~~fGvPvV-VAINrF~tDT~~Ei~~v~~~c~~~Gv~ 347 (502)
..+.+.++.+++.++++. |.+|++..++...-+.+.+..+..|.+
T Consensus 153 ~~~~~~i~~l~~~~~~i~gvvlN~~~~~~~~~~~~~~~l~~~~~~~ 198 (224)
T 1byi_A 153 NHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAP 198 (224)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEECCSSCCTTHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHCCCcEEEEEEeCCCCchhhHHHHHHHHHHHcCCC
Confidence 455666777778899966 889999887544334444444556764
No 253
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=24.49 E-value=2.5e+02 Score=26.90 Aligned_cols=103 Identities=14% Similarity=0.096 Sum_probs=62.1
Q ss_pred HHHHHHHhhcC-----CcEEE----EecCC-------CC---CCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHH
Q 010734 306 ARHIANTKAYG-----ANVVV----AVNMF-------AT---DSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLG 366 (502)
Q Consensus 306 ~kHIeNi~~fG-----vPvVV----AINrF-------~t---DT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA 366 (502)
..|++-+++|| +.+|- .+|-= ++ ++++.+..+.+.++..+.. ++-.+. .|=.+..++-
T Consensus 97 g~~~~a~~~~g~~~~~l~~i~~gy~l~~P~~~~~rl~~~d~~~~~~~~~~~a~~g~~~~~~-~VYl~s--~G~~~~~~~i 173 (240)
T 1viz_A 97 GMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSELLQLP-IFYLEY--SGVLGDIEAV 173 (240)
T ss_dssp HHHHHHHHHCHHHHHHSCEEEEEEEECCTTSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCS-EEEEEC--TTSCCCHHHH
T ss_pred chhHHHHHHcCCCCcceeeeecccEEECCCCceEEeeccCCCCCHHHHHHHHHhCcccCCC-EEEEeC--CCccChHHHH
Confidence 45777788999 77776 55432 22 4566666555555433332 444444 3555555665
Q ss_pred HHHHHHhhcCCCCccccCCCCCCHHHHHHHHHHHhCCCceeeCHHHHHHHH
Q 010734 367 IAVQRACENVTQPLKFLYPLDVSIKEKIDTIARSYGASGVEYSEEAEKQIE 417 (502)
Q Consensus 367 ~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~IYGA~~V~fS~~A~kqLk 417 (502)
+++.+.+. +....+.-.-+=.|.++.++. ||++|..-..+-+.++
T Consensus 174 ~~i~~~~~----~~Pv~vGgGI~t~e~a~~~~~--gAd~VIVGSa~v~~~~ 218 (240)
T 1viz_A 174 KKTKAVLE----TSTLFYGGGIKDAETAKQYAE--HADVIVVGNAVYEDFD 218 (240)
T ss_dssp HHHHHTCS----SSEEEEESSCCSHHHHHHHHT--TCSEEEECTHHHHCHH
T ss_pred HHHHHhcC----CCCEEEEeccCCHHHHHHHHh--CCCEEEEChHHHhCHH
Confidence 55554431 234555555555677777776 8999998887777666
No 254
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=24.25 E-value=1.1e+02 Score=29.47 Aligned_cols=135 Identities=16% Similarity=0.195 Sum_probs=79.2
Q ss_pred EEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhh------------HHHHHHHHhhcCCcEEEEecCCC-CCC
Q 010734 264 IVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVN------------LARHIANTKAYGANVVVAVNMFA-TDS 330 (502)
Q Consensus 264 lVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~N------------L~kHIeNi~~fGvPvVVAINrF~-tDT 330 (502)
++.|+|. +..||..... ++++.+-...+++.|... ..+=++..++.|+.+|+.-=-|. |-+
T Consensus 81 iI~T~Rt-~~EGG~~~~~-----~~~~~~ll~~~~~~~~~d~iDvEl~~~~~~~~~l~~~a~~~~~kiI~S~Hdf~~TP~ 154 (258)
T 4h3d_A 81 LLFTFRS-VVEGGEKLIS-----RDYYTTLNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVKVIISNHDFNKTPK 154 (258)
T ss_dssp EEEECCC-GGGTCSCCCC-----HHHHHHHHHHHHHTTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEEEEESSCCCC
T ss_pred EEEEEec-hhhCCCCCCC-----HHHHHHHHHHHHhcCCchhhHHhhhccHHHHHHHHHHHHhCCCEEEEEEecCCCCCC
Confidence 6779995 7788865321 133333334444555322 22223445678888888776565 455
Q ss_pred HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCCCCHHHHHHHHHH-HhCCCceee
Q 010734 331 KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEY 408 (502)
Q Consensus 331 ~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~~sI~eKIe~IA~-IYGA~~V~f 408 (502)
.+|+..+.+.+.+.|+. ++=--+.++.-+-...|-+...+.-+..+. +|+=...|.=.-++..|+- .||. -++|
T Consensus 155 ~~el~~~~~~~~~~gaD-IvKia~~~~~~~D~l~Ll~~~~~~~~~~~~--~P~I~~~MG~~G~~SRi~~~~fGS-~lTf 229 (258)
T 4h3d_A 155 KEEIVSRLCRMQELGAD-LPKIAVMPQNEKDVLVLLEATNEMFKIYAD--RPIITMSMSGMGVISRLCGEIFGS-ALTF 229 (258)
T ss_dssp HHHHHHHHHHHHHTTCS-EEEEEECCSSHHHHHHHHHHHHHHHHHTCS--SCBEEEECTGGGGGGGTCHHHHCB-CEEE
T ss_pred HHHHHHHHHHHHHhCCC-EEEEEEccCCHHHHHHHHHHHHHHHHhcCC--CCEEEEeCCCCChHHHHHHHHhCC-ceEe
Confidence 68888888888889974 544445666666666666555444332111 3444455666667777777 7774 3444
No 255
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=29.89 E-value=16 Score=31.91 Aligned_cols=13 Identities=0% Similarity=0.115 Sum_probs=11.3
Q ss_pred CCcEEEEecCCCC
Q 010734 316 GANVVVAVNMFAT 328 (502)
Q Consensus 316 GvPvVVAINrF~t 328 (502)
++|+||++|+..-
T Consensus 134 ~~piilv~NK~Dl 146 (204)
T 3th5_A 134 NTPIILVGTKLDL 146 (204)
Confidence 8999999999754
No 256
>2hbv_A 2-amino-3-carboxymuconate 6-semialdehyde decarbox; ACMSD, TIM-barrel, decarboxylase, metaloenzyme, lyase; 1.65A {Pseudomonas fluorescens} SCOP: c.1.9.15 PDB: 2hbx_A
Probab=23.97 E-value=4.7e+02 Score=24.82 Aligned_cols=21 Identities=14% Similarity=0.275 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHCCCCCCCeeEe
Q 010734 409 SEEAEKQIEMYTGQGFSGLPICMA 432 (502)
Q Consensus 409 S~~A~kqLk~ie~~Gf~~LPVCmA 432 (502)
++.....++.++++| +||++=
T Consensus 157 d~~~~p~~~~~~e~~---lpv~iH 177 (334)
T 2hbv_A 157 DATLEAFLTHCANED---IPILVH 177 (334)
T ss_dssp SHHHHHHHHHHHHTT---CCEEEE
T ss_pred cHHHHHHHHHHHHCC---CEEEEC
Confidence 467788899999987 599984
No 257
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=23.84 E-value=3e+02 Score=23.92 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=42.5
Q ss_pred hhHHHHHHHHhhcCCcEEEEecCCCCCCH------------------H---H-HHHHHHHHHHcCCCeEEEc--------
Q 010734 303 VNLARHIANTKAYGANVVVAVNMFATDSK------------------A---E-LNAVRNAAMAAGAFDAVVC-------- 352 (502)
Q Consensus 303 ~NL~kHIeNi~~fGvPvVVAINrF~tDT~------------------~---E-i~~v~~~c~~~Gv~~~~vs-------- 352 (502)
.||.+-|+.+++.|.++|+ +.-++.... + + -+.+++.|++.|+. ++-.
T Consensus 100 ~~l~~~i~~~~~~~~~vil-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~v~-~vD~~~~~~~~~ 177 (240)
T 3mil_A 100 DNIRQMVSLMKSYHIRPII-IGPGLVDREKWEKEKSEEIALGYFRTNENFAIYSDALAKLANEEKVP-FVALNKAFQQEG 177 (240)
T ss_dssp HHHHHHHHHHHHTTCEEEE-ECCCCCCHHHHHHHCHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTCC-EECHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCeEEE-EcCCCCCchhhhhhccccccccccchHHHHHHHHHHHHHHHHHhCCe-EEehHHHHhhcC
Confidence 3777778888888875555 444443221 2 1 24567888889985 4321
Q ss_pred -----CccccC----ccchhHHHHHHHHHhhc
Q 010734 353 -----SHHAHG----GKGAVDLGIAVQRACEN 375 (502)
Q Consensus 353 -----~~wakG----GeGa~eLA~~Vv~a~e~ 375 (502)
..+.+| -+|...+|+.+.+.+++
T Consensus 178 ~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~~l~~ 209 (240)
T 3mil_A 178 GDAWQQLLTDGLHFSGKGYKIFHDELLKVIET 209 (240)
T ss_dssp GGGGGGGBSSSSSBCHHHHHHHHHHHHHHHHH
T ss_pred CccHhhccCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 112333 46677777777777654
No 258
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=23.72 E-value=1.1e+02 Score=26.21 Aligned_cols=57 Identities=16% Similarity=-0.009 Sum_probs=33.0
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHH-----HcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 315 YGANVVVAVNMFATDSKAELNAVRNAAM-----AAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~Ei~~v~~~c~-----~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
.+.|++++.|+-.-..+.+.+.+.+... ..+. .+-+.=++=|+|-.+|-+.+++.+.
T Consensus 116 ~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 116 SCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVW---QIQSCSALTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp TTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE---EEEECCTTTCTTHHHHHHHHHHTC-
T ss_pred cCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCce---EEEEccCCCCCCHHHHHHHHHHHHH
Confidence 6899999999975433222222333211 1122 2233446678998888888777653
No 259
>3cjp_A Predicted amidohydrolase, dihydroorotase family; structural genomics, protein structure initiative; 1.85A {Clostridium acetobutylicum atcc 824}
Probab=23.61 E-value=4.2e+02 Score=24.14 Aligned_cols=21 Identities=14% Similarity=0.222 Sum_probs=13.6
Q ss_pred HHHHHHHhhcCCcEEEEecCC
Q 010734 306 ARHIANTKAYGANVVVAVNMF 326 (502)
Q Consensus 306 ~kHIeNi~~fGvPvVVAINrF 326 (502)
+..++.+++.||-.+|.....
T Consensus 16 ~~~l~~m~~~Gv~~~v~~~~~ 36 (272)
T 3cjp_A 16 EKHIKIMDEAGVDKTILFSTS 36 (272)
T ss_dssp HHHHHHHHHHTCCEEEEECCS
T ss_pred HHHHHHHHHcCCCEEEEeCCC
Confidence 455666777777776666543
No 260
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=23.49 E-value=71 Score=34.67 Aligned_cols=67 Identities=10% Similarity=0.008 Sum_probs=39.8
Q ss_pred HHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 308 HIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 308 HIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
|+.....+++|+|+++|+-.-.....-+.+.++.+..|....-+...=++=|+|-.+|-+.+++.+.
T Consensus 117 ~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 117 NFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp HHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 3444556899999999997543211112334445555653100112335568888888888887764
No 261
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=23.42 E-value=1.4e+02 Score=28.69 Aligned_cols=57 Identities=11% Similarity=0.053 Sum_probs=40.5
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 315 YGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
-+.|+++++|+-.--++++++...++.++.|...+.+| ++-|+|-.+|-+.+.+.+.
T Consensus 49 ~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iS---A~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 49 KNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSIN---SVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECC---TTTCTTGGGHHHHHHHHHH
T ss_pred CCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEE---CCCcccHHHHHHHHHHHHH
Confidence 37999999999765557777777777777788533333 3567787787777666553
No 262
>2lf3_A Effector protein hopab3; type III effector, structural genomics, PSI-biology, protein structure initiative; NMR {Pseudomonas syringae PV}
Probab=23.38 E-value=70 Score=27.73 Aligned_cols=39 Identities=18% Similarity=0.168 Sum_probs=31.7
Q ss_pred HHHHHHhhhhcccCcChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCC-CCCHH
Q 010734 22 LAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPE-DLTPE 80 (502)
Q Consensus 22 laA~idn~i~~~n~~~~~~~~~~l~p~~~~g~r~~~~~~~~r~~~l~~~~~~p~-~~~~~ 80 (502)
|.+++++||.|.. -++...-+.|+-.||.+..++ ++|.-
T Consensus 51 LraAle~~i~~~~--------------------piP~Di~raL~~VGI~p~id~~~~Slv 90 (107)
T 2lf3_A 51 LRAALEAYIVWLR--------------------PIPLDIANALEGVGITPRFDNPEEAKV 90 (107)
T ss_dssp HHHHHHHHHHTCC--------------------CCCHHHHHHHHHTTCCCCCSSTTTTTT
T ss_pred HHHHHHHHHHhcC--------------------CCCHHHHHHHHcCCCCCCCCcchhhhh
Confidence 6788999999875 366788899999999998887 65543
No 263
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=23.31 E-value=47 Score=29.32 Aligned_cols=59 Identities=14% Similarity=0.141 Sum_probs=39.6
Q ss_pred cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 315 YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~--~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
++.|++|++|+..-... .+++.+.+++++.+.. +.+-..-++=|+|-.+|-+.+.+.+.
T Consensus 153 ~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~i~~~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 153 FRVADLIVINKVALAEAVGADVEKMKADAKLINPR-AKIIEMDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp HHTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTT-SEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred hhcCCEEEEecccCCcchhhHHHHHHHHHHHhCCC-CeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 46899999999754222 2466677777765432 22334556678999998888877664
No 264
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=23.17 E-value=69 Score=33.93 Aligned_cols=43 Identities=7% Similarity=0.069 Sum_probs=29.5
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010734 305 LARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 347 (502)
Q Consensus 305 L~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~ 347 (502)
..+|.+.++.+++|++|++|+-.-......+.+.+..+.+|..
T Consensus 123 t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~ 165 (529)
T 2h5e_A 123 TRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIG 165 (529)
T ss_dssp HHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhCCC
Confidence 4667777888999999999997654433334455555566763
No 265
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=23.09 E-value=1.8e+02 Score=27.82 Aligned_cols=48 Identities=8% Similarity=0.046 Sum_probs=33.3
Q ss_pred HHHHHHHHhh-cCCcEEEEecCCCCCCHHHHHHHHHHHHHcC-CCeEEEcCc
Q 010734 305 LARHIANTKA-YGANVVVAVNMFATDSKAELNAVRNAAMAAG-AFDAVVCSH 354 (502)
Q Consensus 305 L~kHIeNi~~-fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~G-v~~~~vs~~ 354 (502)
+..-|+.+++ .++|++|=+.-.. +.+|+..+.+.+++.| +..+.+++.
T Consensus 148 ~~~ii~~vr~~~~~Pv~vK~~~~~--~~~~~~~~a~~~~~aG~~d~i~v~~~ 197 (314)
T 2e6f_A 148 MRTYLQQVSLAYGLPFGVKMPPYF--DIAHFDTAAAVLNEFPLVKFVTCVNS 197 (314)
T ss_dssp HHHHHHHHHHHHCSCEEEEECCCC--CHHHHHHHHHHHHTCTTEEEEEECCC
T ss_pred HHHHHHHHHHhcCCCEEEEECCCC--CHHHHHHHHHHHHhcCCceEEEEeCC
Confidence 4445555555 4899999776432 6788888888999999 864444443
No 266
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=22.83 E-value=1.2e+02 Score=29.47 Aligned_cols=61 Identities=11% Similarity=-0.014 Sum_probs=36.2
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCC--CeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 315 YGANVVVAVNMFATDSKAELNAVRNAAMAAGA--FDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 315 fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv--~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
.++|+||++|+-.-..+.+.+.+.+....... ..+.+-+.=++=|+|-.+|-+.+++.+.+
T Consensus 265 ~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 265 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp TTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred CCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 49999999999764333233333333221111 11223344467789999999988887753
No 267
>1h4p_A Glucan 1,3-beta-glucosidase I/II; hydrolase, glucan degradation, hydrolyase, glycosidase; HET: NAG BMA MAN NDG; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.8.3
Probab=22.72 E-value=1.2e+02 Score=30.84 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=41.5
Q ss_pred HHHHHHHhhcCCcEE-EEec----------CCCCC-CHHHHHHHHHHHHHcCCCeEEEcCccccCcc
Q 010734 306 ARHIANTKAYGANVV-VAVN----------MFATD-SKAELNAVRNAAMAAGAFDAVVCSHHAHGGK 360 (502)
Q Consensus 306 ~kHIeNi~~fGvPvV-VAIN----------rF~tD-T~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGe 360 (502)
+..++.|+..|+.+| +.|. .|..+ .-+-++.+.++|++.|.. +++.-|...|+.
T Consensus 76 e~d~~~i~~~G~N~VRipi~~~~~~~~~~~py~~~~~l~~ld~vv~~a~~~Gi~-VilDlH~~pG~q 141 (408)
T 1h4p_A 76 EQDFANIASQGFNLVRIPIGYWAFQILDDDPYVSGLQESYLDQAIGWARNNSLK-VWVDLHGAAGSQ 141 (408)
T ss_dssp HHHHHHHHHTTCCEEEEEEEGGGTCCCTTCCCCCSSHHHHHHHHHHHHHHTTCE-EEEEEEECTTCS
T ss_pred HHHHHHHHHCCCCEEEccCCHHHcccCCCCCCccccHHHHHHHHHHHHHHCCCE-EEEECCCCCCcc
Confidence 678899999999998 5553 23333 567789999999999995 999888776654
No 268
>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*
Probab=22.62 E-value=3.6e+02 Score=26.45 Aligned_cols=123 Identities=15% Similarity=0.136 Sum_probs=74.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCcc----ccCCCC-CCHHHHHHHHHH--
Q 010734 327 ATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLK----FLYPLD-VSIKEKIDTIAR-- 399 (502)
Q Consensus 327 ~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk----~LY~~~-~sI~eKIe~IA~-- 399 (502)
|.+|+++|+.+.+.+.+.|+..+.+.-.| +.+|.+.+ .. +..+ -=||.. .+.+.|+..+..
T Consensus 54 p~~t~~~I~~lc~eA~~~~~aaVCV~p~~-------V~~a~~~L---~g--s~v~v~tVigFP~G~~~~~~Kv~Ea~~Ai 121 (260)
T 3r12_A 54 PFATPDDIKKLCLEARENRFHGVCVNPCY-------VKLAREEL---EG--TDVKVVTVVGFPLGANETRTKAHEAIFAV 121 (260)
T ss_dssp TTCCHHHHHHHHHHHHHTTCSEEEECGGG-------HHHHHHHH---TT--SCCEEEEEESTTTCCSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCcEEEECHHH-------HHHHHHHh---cC--CCCeEEEEecCCCCCCcHHHHHHHHHHHH
Confidence 68999999999999999998655555555 34454433 21 1111 123443 478999988877
Q ss_pred HhCCCceeeC-----------HHHHHHHHHHHHCCCCCCCee-EeecCCCCCCCCCCCCCCCCceEEeeEEEeeCCCceE
Q 010734 400 SYGASGVEYS-----------EEAEKQIEMYTGQGFSGLPIC-MAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFI 467 (502)
Q Consensus 400 IYGA~~V~fS-----------~~A~kqLk~ie~~Gf~~LPVC-mAKTqySlSdDp~l~g~P~gf~i~Vrdv~~~aGAGFi 467 (502)
-.||++|.+- +...++|+.+.+. .+..|+= |-=|- =|+++ -....-++-..+||-||
T Consensus 122 ~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a-~~~~~lKVIlEt~-~Lt~e---------ei~~A~~ia~eaGADfV 190 (260)
T 3r12_A 122 ESGADEIDMVINVGMLKAKEWEYVYEDIRSVVES-VKGKVVKVIIETC-YLDTE---------EKIAACVISKLAGAHFV 190 (260)
T ss_dssp HHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHH-TTTSEEEEECCGG-GCCHH---------HHHHHHHHHHHTTCSEE
T ss_pred HcCCCEEEEEeehhhhccccHHHHHHHHHHHHHh-cCCCcEEEEEeCC-CCCHH---------HHHHHHHHHHHhCcCEE
Confidence 8999988731 4566777777775 2233431 11221 12221 13334455566788888
Q ss_pred EeecC
Q 010734 468 YPLVG 472 (502)
Q Consensus 468 v~~~G 472 (502)
=--||
T Consensus 191 KTSTG 195 (260)
T 3r12_A 191 KTSTG 195 (260)
T ss_dssp ECCCS
T ss_pred EcCCC
Confidence 77666
No 269
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=22.59 E-value=2.1e+02 Score=27.91 Aligned_cols=104 Identities=15% Similarity=0.046 Sum_probs=63.5
Q ss_pred HHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc-C
Q 010734 298 VEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN-V 376 (502)
Q Consensus 298 L~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~-~ 376 (502)
.+.-++.+.++|+-.++.|..|.+.+=-...-+++.+..+.+.+.+.|+..+.+++.-.- +.-+-....++.+.+ -
T Consensus 116 ~~e~l~~~~~~v~~a~~~g~~v~~~~~d~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~---~~P~~v~~lv~~l~~~~ 192 (293)
T 3ewb_X 116 RAEVLASIKHHISYARQKFDVVQFSPEDATRSDRAFLIEAVQTAIDAGATVINIPDTVGY---TNPTEFGQLFQDLRREI 192 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTCCEEEEECSSSC---CCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCC---CCHHHHHHHHHHHHHhc
Confidence 344556788899999999999887664322234566666777778899988888876432 333333333333332 1
Q ss_pred CC------CccccCCCCCCHHHHHHHHHH-HhCCCcee
Q 010734 377 TQ------PLKFLYPLDVSIKEKIDTIAR-SYGASGVE 407 (502)
Q Consensus 377 ~~------~fk~LY~~~~sI~eKIe~IA~-IYGA~~V~ 407 (502)
+. .+++=.+..+.+. +.++- -+|++.|+
T Consensus 193 ~~~~~~~l~~H~Hnd~Gla~A---N~laA~~aGa~~vd 227 (293)
T 3ewb_X 193 KQFDDIIFASHCHDDLGMATA---NALAAIENGARRVE 227 (293)
T ss_dssp TTGGGSEEEEECBCTTSCHHH---HHHHHHHTTCCEEE
T ss_pred CCccCceEEEEeCCCcChHHH---HHHHHHHhCCCEEE
Confidence 21 2444444555553 56666 78888775
No 270
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=22.46 E-value=1.4e+02 Score=28.76 Aligned_cols=59 Identities=7% Similarity=0.089 Sum_probs=37.7
Q ss_pred cccHHHHHHH--HhhHHHHHHHHhh--cCCcEEE-EecCCCCCCHHHHHHHHHHHHHcCCCeEE
Q 010734 292 NENVALVEAG--CVNLARHIANTKA--YGANVVV-AVNMFATDSKAELNAVRNAAMAAGAFDAV 350 (502)
Q Consensus 292 ~eNl~AL~~G--~~NL~kHIeNi~~--fGvPvVV-AINrF~tDT~~Ei~~v~~~c~~~Gv~~~~ 350 (502)
.+-++.+.++ .+...+=|+.+++ .|+.+-+ .|=-||.+|+++++...+++++.+...+.
T Consensus 126 ~~vl~~m~r~~t~e~~~~~i~~l~~~~~gi~i~~~~IvG~PgEt~ed~~~t~~~l~~l~~~~v~ 189 (304)
T 2qgq_A 126 DKILKLMGRTKSSEELKKMLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLG 189 (304)
T ss_dssp HHHHHHTTCCSCHHHHHHHHHHHHHHCTTCEEEEEEEECCTTCCHHHHHHHHHHHHHHCCSEEE
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 3334444443 2344445566666 4664422 23459999999999999999999986443
No 271
>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}
Probab=22.44 E-value=2.7e+02 Score=27.76 Aligned_cols=88 Identities=16% Similarity=0.002 Sum_probs=51.7
Q ss_pred CCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHH
Q 010734 259 PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVR 338 (502)
Q Consensus 259 P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~ 338 (502)
-|.+-+|.-+.+||-. . .+.-.+++.++.+-+. ...+.|++--. + -|++|+....
T Consensus 140 AdEIDmVINig~lk~g--~----------~~~v~~eI~~V~~a~~----------~~~lKVIlEt~-~--Lt~eei~~A~ 194 (288)
T 3oa3_A 140 ASELDMVMNYPWLSEK--R----------YTDVFQDIRAVRLAAK----------DAILKVILETS-Q--LTADEIIAGC 194 (288)
T ss_dssp CSEEEEECCHHHHHTT--C----------HHHHHHHHHHHHHHTT----------TSEEEEECCGG-G--CCHHHHHHHH
T ss_pred CCEEEEEeehhhhcCC--c----------HHHHHHHHHHHHHHhc----------CCCceEEEECC-C--CCHHHHHHHH
Confidence 4667788788887732 1 2223344444444331 11233333222 2 3678999999
Q ss_pred HHHHHcCCCeEEEcCccccCccc--hhHHHHHHHH
Q 010734 339 NAAMAAGAFDAVVCSHHAHGGKG--AVDLGIAVQR 371 (502)
Q Consensus 339 ~~c~~~Gv~~~~vs~~wakGGeG--a~eLA~~Vv~ 371 (502)
+.|.++|+..+-.|+.|..||.= .++|-+++++
T Consensus 195 ~ia~eaGADfVKTSTGf~~~GAT~edv~lmr~~v~ 229 (288)
T 3oa3_A 195 VLSSLAGADYVKTSTGFNGPGASIENVSLMSAVCD 229 (288)
T ss_dssp HHHHHTTCSEEECCCSSSSCCCCHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEcCCCCCCCCCCHHHHHHHHHHHH
Confidence 99999999766678889877643 3344445443
No 272
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=22.43 E-value=70 Score=32.04 Aligned_cols=94 Identities=14% Similarity=0.107 Sum_probs=54.7
Q ss_pred HHHHHHHHhhcCCcEEEEecCCC-----CCCHHH-HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHH-HHHhhcCC
Q 010734 305 LARHIANTKAYGANVVVAVNMFA-----TDSKAE-LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAV-QRACENVT 377 (502)
Q Consensus 305 L~kHIeNi~~fGvPvVVAINrF~-----tDT~~E-i~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~V-v~a~e~~~ 377 (502)
+++=++.++++|..|++.=+.+. +-|++| .+.+.+....-.+ ++++| +.||.|+..|-..+ -+.+.++|
T Consensus 33 ~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i-~aI~~---~rGG~g~~rlL~~lD~~~i~~~P 108 (336)
T 3sr3_A 33 FERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNV-SCIMS---TIGGMNSNSLLPYIDYDAFQNNP 108 (336)
T ss_dssp HHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTE-EEEEE---SCCCSCGGGGGGGSCHHHHHHSC
T ss_pred HHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCC-CEEEE---ccccccHHHHhhhcChhHHhhCC
Confidence 33444556678999998655332 345555 4455555555677 57777 57999999988765 45554432
Q ss_pred CCccccCCCCCCHHHHHHHHH---HHhCC
Q 010734 378 QPLKFLYPLDVSIKEKIDTIA---RSYGA 403 (502)
Q Consensus 378 ~~fk~LY~~~~sI~eKIe~IA---~IYGA 403 (502)
. .=.=|.+-..|--=|-+-+ ++||-
T Consensus 109 K-~~~GySDiTaL~~al~~~~G~~t~hGp 136 (336)
T 3sr3_A 109 K-IMIGYSDATALLLGIYAKTGIPTFYGP 136 (336)
T ss_dssp C-EEEECGGGHHHHHHHHHHHCCCEEECC
T ss_pred e-EEEEechHHHHHHHHHHhcCceEEECC
Confidence 2 2234565444544444322 25664
No 273
>2h9a_A Carbon monoxide dehydrogenase corrinoid/iron- sulfur protein, gamma subunit; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_A*
Probab=22.41 E-value=2e+02 Score=30.27 Aligned_cols=99 Identities=13% Similarity=0.151 Sum_probs=63.4
Q ss_pred hcCCcEEEEecCCCCCCHHHHHHHHHHHHHc-CCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCccccCCCCCCHHH
Q 010734 314 AYGANVVVAVNMFATDSKAELNAVRNAAMAA-GAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKE 392 (502)
Q Consensus 314 ~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~-Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~~~fk~LY~~~~sI~e 392 (502)
.|+.-.|+.-+ .+++++.+..+.+..++. .++ .++. --.+.+++.++++..++ =.+|+.+..=.+
T Consensus 125 ~~~aD~I~l~~--~~~dpe~~~~~Vk~V~e~~dvP-lsID--------~dp~vleaale~~~d~~---pLIns~t~en~~ 190 (445)
T 2h9a_A 125 MHSVNLVALKG--SSQDAATFAKAVATAREVTDLP-FILI--------GTPEQLAAALETEGANN---PLLYAATADNYE 190 (445)
T ss_dssp EEECCEEEEEC--TTCCHHHHHHHHHHHHHHCCSC-EEEE--------SCHHHHHHHHHHHGGGC---CEEEEECTTTHH
T ss_pred cccCcEEEEeC--CCCCHHHHHHHHHHHHHhcCCC-EEEE--------CCHHHHHHHHHhcCCCC---CEEEECCHHHHH
Confidence 45577776665 566777788877776654 774 6655 23566777777765321 134443332126
Q ss_pred HHHHHHHHhCCCceeeC---HHHHHHHHHHHHCCCCC
Q 010734 393 KIDTIARSYGASGVEYS---EEAEKQIEMYTGQGFSG 426 (502)
Q Consensus 393 KIe~IA~IYGA~~V~fS---~~A~kqLk~ie~~Gf~~ 426 (502)
++-.+|.-|++.=|..+ ..+++.+++++++|+.+
T Consensus 191 ~~~~la~~y~~~vV~~~~~l~~l~~lv~~a~~~Gi~~ 227 (445)
T 2h9a_A 191 QMVELAKKYNVPLTVSAKGLDALAELVQKITALGYKN 227 (445)
T ss_dssp HHHHHHHHHTCCEEEECSSHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHCCCCc
Confidence 66666668999888777 56667777788889863
No 274
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=22.33 E-value=1.5e+02 Score=30.04 Aligned_cols=58 Identities=10% Similarity=0.065 Sum_probs=37.3
Q ss_pred hhcCCcEEEEecCCCCCCHHH-HHHH-HHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 313 KAYGANVVVAVNMFATDSKAE-LNAV-RNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 313 ~~fGvPvVVAINrF~tDT~~E-i~~v-~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
++.+.|+++++|+- |..++ -..+ .+++ +.|...+. ..=++=|+|-.+|-+.+++.+.+
T Consensus 107 ~~~~~p~ilv~NK~--D~~~~~~~~~~~~~~-~lg~~~~~--~iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 107 RKSTVDTILVANKA--ENLREFEREVKPELY-SLGFGEPI--PVSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp HHHTCCEEEEEESC--CSHHHHHHHTHHHHG-GGSSCSCE--ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEEeCC--CCccccHHHHHHHHH-hcCCCCEE--EEeccCCCCHHHHHHHHHHhccc
Confidence 34689999999985 44433 1223 4554 46662222 22356789999999999887753
No 275
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=22.32 E-value=1.4e+02 Score=29.69 Aligned_cols=100 Identities=13% Similarity=0.078 Sum_probs=63.1
Q ss_pred hhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCC-C---
Q 010734 303 VNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVT-Q--- 378 (502)
Q Consensus 303 ~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~~~-~--- 378 (502)
.+...+++-++++|+.+++.+=-.+.-+++.+..+.+.+.+.|+..+.+++.-.-. --.+.++.|-...+.-+ .
T Consensus 120 ~~~~~~i~~ak~~G~~v~~~~~~a~~~~~e~~~~ia~~~~~~Ga~~i~l~DT~G~~--~P~~v~~lv~~l~~~~~~~~pi 197 (345)
T 1nvm_A 120 DVSKQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYMADSGGAM--SMNDIRDRMRAFKAVLKPETQV 197 (345)
T ss_dssp GGGHHHHHHHHHHTCEEEEEEESTTSSCHHHHHHHHHHHHHHTCSEEEEECTTCCC--CHHHHHHHHHHHHHHSCTTSEE
T ss_pred HHHHHHHHHHHHCCCEEEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCcCcc--CHHHHHHHHHHHHHhcCCCceE
Confidence 46788999999999999998755566678889999999999999877777763322 12233332222222211 1
Q ss_pred CccccCCCCCCHHHHHHHHHH-HhCCCcee
Q 010734 379 PLKFLYPLDVSIKEKIDTIAR-SYGASGVE 407 (502)
Q Consensus 379 ~fk~LY~~~~sI~eKIe~IA~-IYGA~~V~ 407 (502)
.+++=-+..+.+.. .++- -.||+.|+
T Consensus 198 ~~H~Hn~~G~avAn---~laA~~aGa~~vd 224 (345)
T 1nvm_A 198 GMHAHHNLSLGVAN---SIVAVEEGCDRVD 224 (345)
T ss_dssp EEECBCTTSCHHHH---HHHHHHTTCCEEE
T ss_pred EEEECCCccHHHHH---HHHHHHcCCCEEE
Confidence 14444445555543 4444 67777665
No 276
>3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein structure initiative, TI protein; HET: GOL; 1.76A {Bordetella bronchiseptica} PDB: 3k4w_A
Probab=22.24 E-value=3e+02 Score=26.03 Aligned_cols=21 Identities=14% Similarity=0.267 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHCCCCCCCeeEee
Q 010734 410 EEAEKQIEMYTGQGFSGLPICMAK 433 (502)
Q Consensus 410 ~~A~kqLk~ie~~Gf~~LPVCmAK 433 (502)
+.-..+++.++++|+ ||++==
T Consensus 138 ~~~~~~~~~a~e~gl---pv~iH~ 158 (291)
T 3irs_A 138 RRLYPLYAFCEDNGI---PVIMMT 158 (291)
T ss_dssp GGGHHHHHHHHHTTC---CEEEEC
T ss_pred HHHHHHHHHHHHcCC---eEEEeC
Confidence 445677778888764 888754
No 277
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=22.08 E-value=1.2e+02 Score=31.22 Aligned_cols=80 Identities=10% Similarity=0.083 Sum_probs=52.8
Q ss_pred ehhhhhcCCCCCccCCCCCchhcccccHHHHHHH--HhhHHHHHHHHhhcCCc-E-EEEecCCCCCCHHHHHHHHHHHHH
Q 010734 268 IRALKMHGGGPQVVAGKPLDHAYLNENVALVEAG--CVNLARHIANTKAYGAN-V-VVAVNMFATDSKAELNAVRNAAMA 343 (502)
Q Consensus 268 vRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G--~~NL~kHIeNi~~fGvP-v-VVAINrF~tDT~~Ei~~v~~~c~~ 343 (502)
++.||-.| +....+| .+...++-++++.++ .+...+-|+.+++.|++ + +-.|--+|.+|.+++....+++.+
T Consensus 156 l~~L~~~G-~~rislG---vQS~~~~~l~~i~R~~~~~~~~~ai~~~r~~G~~~v~~dlI~GlPget~e~~~~tl~~~~~ 231 (457)
T 1olt_A 156 LDHLRAEG-FNRLSMG---VQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNIDLIYGLPKQTPESFAFTLKRVAE 231 (457)
T ss_dssp HHHHHHTT-CCEEEEE---EECCCHHHHHHHTCCCCHHHHHHHHHHHHHTTCCSCEEEEEESCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHcC-CCEEEEe---eccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEcCCCCCCHHHHHHHHHHHHh
Confidence 45555554 4444444 233444555555554 44566667788888887 4 334566999999999999999999
Q ss_pred cCCCeEEE
Q 010734 344 AGAFDAVV 351 (502)
Q Consensus 344 ~Gv~~~~v 351 (502)
+++..+.+
T Consensus 232 l~~~~i~~ 239 (457)
T 1olt_A 232 LNPDRLSV 239 (457)
T ss_dssp HCCSEEEE
T ss_pred cCcCEEEe
Confidence 99864433
No 278
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=21.80 E-value=1.1e+02 Score=30.24 Aligned_cols=59 Identities=14% Similarity=0.037 Sum_probs=40.1
Q ss_pred HHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 010734 307 RHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 371 (502)
Q Consensus 307 kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~ 371 (502)
.|++-..+.|+|+|+.-=-| ++++++.|+++|++ + .+..+-.|+-|=-=-..|++...+
T Consensus 103 ~~~~~~l~~Gv~vViGTTG~---~~e~~~~L~~aa~~--~-~~~~a~N~SiGv~ll~~l~~~aa~ 161 (288)
T 3ijp_A 103 LYANYAAQKSLIHIIGTTGF---SKTEEAQIADFAKY--T-TIVKSGNMSLGVNLLANLVKRAAK 161 (288)
T ss_dssp HHHHHHHHHTCEEEECCCCC---CHHHHHHHHHHHTT--S-EEEECSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECCCC---CHHHHHHHHHHhCc--C-CEEEECCCcHHHHHHHHHHHHHHH
Confidence 35556677899999875445 56788889999886 3 367888888775444444444333
No 279
>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1
Probab=21.59 E-value=1.7e+02 Score=28.09 Aligned_cols=54 Identities=22% Similarity=0.242 Sum_probs=36.5
Q ss_pred HHHHHHHHhhcCCcEEEEec-CCCCCCHHHHHHHHHHHHHcCCCeEEEcCcccc-Ccc
Q 010734 305 LARHIANTKAYGANVVVAVN-MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAH-GGK 360 (502)
Q Consensus 305 L~kHIeNi~~fGvPvVVAIN-rF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wak-GGe 360 (502)
+.+=.+-...+|+|+=|.|- -+. |++|+....+.|.++|+..+-.|+.|.. ||.
T Consensus 122 i~~v~~a~~~~g~~lKvIlEt~~L--~~e~i~~a~ria~eaGADfVKTsTG~~~~~gA 177 (234)
T 1n7k_A 122 VSGIVKLAKSYGAVVKVILEAPLW--DDKTLSLLVDSSRRAGADIVKTSTGVYTKGGD 177 (234)
T ss_dssp HHHHHHHHHHTTCEEEEECCGGGS--CHHHHHHHHHHHHHTTCSEEESCCSSSCCCCS
T ss_pred HHHHHHHHhhcCCeEEEEEeccCC--CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCC
Confidence 33333344568888744444 344 4699999999999999975556667875 553
No 280
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=21.51 E-value=1.9e+02 Score=29.18 Aligned_cols=42 Identities=19% Similarity=0.201 Sum_probs=28.5
Q ss_pred hHHHHHHHHhhcCCc-EEEEecCCCCCC--HHHH----HHHHHHHHHcC
Q 010734 304 NLARHIANTKAYGAN-VVVAVNMFATDS--KAEL----NAVRNAAMAAG 345 (502)
Q Consensus 304 NL~kHIeNi~~fGvP-vVVAINrF~tDT--~~Ei----~~v~~~c~~~G 345 (502)
...+|+..++..|+| +||++|+-.--. ++.+ +.+++++++.|
T Consensus 144 qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g 192 (434)
T 1zun_B 144 QTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIA 192 (434)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhC
Confidence 345677777888996 899999975432 3433 44566677777
No 281
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=21.40 E-value=5e+02 Score=24.94 Aligned_cols=68 Identities=9% Similarity=0.113 Sum_probs=42.3
Q ss_pred hhcccccHHHHHHHHhhHHHHHHHHh-hc-CCcEEEEecCC--------------------CCCCHHHHHHHHHHHHHcC
Q 010734 288 HAYLNENVALVEAGCVNLARHIANTK-AY-GANVVVAVNMF--------------------ATDSKAELNAVRNAAMAAG 345 (502)
Q Consensus 288 ~~l~~eNl~AL~~G~~NL~kHIeNi~-~f-GvPvVVAINrF--------------------~tDT~~Ei~~v~~~c~~~G 345 (502)
.++=++|.+++.+-+..|.+-++..- .. +.++||.=..| ..=|.++|+.+.+.+++.+
T Consensus 149 a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yf~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~ 228 (286)
T 3gi1_A 149 KDSYTKNAKAFKKEAEQLTEEYTQKFKKVRSKTFVTQHTAFSYLAKRFGLKQLGISGISPEQEPSPRQLKEIQDFVKEYN 228 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEEESCCHHHHHHTTCEEEEEECSCC---CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCchHHHHHHCCCeEeeccccCCCCCCCHHHHHHHHHHHHHcC
Confidence 34445788888888888888877642 12 34444432222 2346778888888888888
Q ss_pred CCeEEEcCccc
Q 010734 346 AFDAVVCSHHA 356 (502)
Q Consensus 346 v~~~~vs~~wa 356 (502)
++ +++.+...
T Consensus 229 v~-~if~e~~~ 238 (286)
T 3gi1_A 229 VK-TIFAEDNV 238 (286)
T ss_dssp CC-EEEECTTS
T ss_pred CC-EEEEeCCC
Confidence 85 66666544
No 282
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=21.31 E-value=1.8e+02 Score=27.71 Aligned_cols=44 Identities=20% Similarity=0.102 Sum_probs=31.3
Q ss_pred CCcEEEEecC-CCC---CCHHHHHHHHHHHHHcCCCeEEEcCccccCcc
Q 010734 316 GANVVVAVNM-FAT---DSKAELNAVRNAAMAAGAFDAVVCSHHAHGGK 360 (502)
Q Consensus 316 GvPvVVAINr-F~t---DT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGe 360 (502)
+...|+..|- .++ =+.++++.|.++|++.|+. +++-++|+.++-
T Consensus 179 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~-li~Dea~~~~~~ 226 (407)
T 3nra_A 179 GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGAT-VIADQLYSRLRY 226 (407)
T ss_dssp TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCE-EEEECTTTTSBC
T ss_pred CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCE-EEEEcccccccc
Confidence 4555555553 233 2578999999999999995 888888886543
No 283
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=21.17 E-value=1.6e+02 Score=26.66 Aligned_cols=42 Identities=12% Similarity=0.231 Sum_probs=32.2
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEc
Q 010734 309 IANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVC 352 (502)
Q Consensus 309 IeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs 352 (502)
-+-++++|+.+ ++++-+...+.++++...+.|+++|+. .++.
T Consensus 69 ~~~l~~~gl~i-~~~~~~~~~~~~~~~~~i~~A~~lGa~-~v~~ 110 (262)
T 3p6l_A 69 KELAASKGIKI-VGTGVYVAEKSSDWEKMFKFAKAMDLE-FITC 110 (262)
T ss_dssp HHHHHHTTCEE-EEEEEECCSSTTHHHHHHHHHHHTTCS-EEEE
T ss_pred HHHHHHcCCeE-EEEeccCCccHHHHHHHHHHHHHcCCC-EEEe
Confidence 34567899974 566766667788999999999999997 4444
No 284
>2f6k_A Metal-dependent hydrolase; metal dependent hydrolyse, aminohydro_2, ACMDS, ACMS, trypto metabolism, quinolinic acid, QUIN; 2.50A {Lactobacillus plantarum} SCOP: c.1.9.15
Probab=21.02 E-value=2.6e+02 Score=25.89 Aligned_cols=20 Identities=5% Similarity=0.052 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHCCCCCCCeeEe
Q 010734 410 EEAEKQIEMYTGQGFSGLPICMA 432 (502)
Q Consensus 410 ~~A~kqLk~ie~~Gf~~LPVCmA 432 (502)
+.-..+++..+++| +||++=
T Consensus 135 ~~~~~~~~~a~~~~---lpv~iH 154 (307)
T 2f6k_A 135 PVLERVYQELDARQ---AIVALH 154 (307)
T ss_dssp GGGHHHHHHHHTTT---CEEEEE
T ss_pred HhHHHHHHHHHHcC---CeEEEC
Confidence 45677888888886 599984
No 285
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=20.87 E-value=87 Score=33.91 Aligned_cols=65 Identities=20% Similarity=0.179 Sum_probs=38.8
Q ss_pred HHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC--eEEEcCccccCccchhHHHHHHHHHhh
Q 010734 308 HIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF--DAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 308 HIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~--~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
|+.....+++|+|+++|+-.-.....-+...++.+..|.. ++..+ =++=|+|-.+|-+.+++.+.
T Consensus 115 ~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~v--SAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 115 NCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVRC--SAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp HHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCEEE--CTTTCTTHHHHHHHHHHHSC
T ss_pred HHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEEEe--ecccCCCchhHHHHHhhcCC
Confidence 3344456899999999996543211112234444555652 12222 25567888888888888764
No 286
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=20.83 E-value=1.2e+02 Score=29.60 Aligned_cols=58 Identities=16% Similarity=0.143 Sum_probs=34.8
Q ss_pred HHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHH
Q 010734 307 RHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQ 370 (502)
Q Consensus 307 kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv 370 (502)
.|++...+.|+|+|+.-=-| |+++++.|+++|++ + .+..+..|+-|=-=-..|++...
T Consensus 88 ~~~~~al~~G~~vVigTTG~---s~~~~~~L~~aa~~--~-~vv~a~N~s~Gv~l~~~~~~~aa 145 (272)
T 4f3y_A 88 VHLDAALRHDVKLVIGTTGF---SEPQKAQLRAAGEK--I-ALVFSANMSVGVNVTMKLLEFAA 145 (272)
T ss_dssp HHHHHHHHHTCEEEECCCCC---CHHHHHHHHHHTTT--S-EEEECSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECCCC---CHHHHHHHHHHhcc--C-CEEEECCCCHHHHHHHHHHHHHH
Confidence 45555666788877753334 56777778887775 3 35677777776544444444433
No 287
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=20.66 E-value=3.6e+02 Score=25.74 Aligned_cols=35 Identities=11% Similarity=0.097 Sum_probs=23.2
Q ss_pred HHHHhhc-CCcEEEEecCCCCCCHHHHHHHHHHHHHcCC
Q 010734 309 IANTKAY-GANVVVAVNMFATDSKAELNAVRNAAMAAGA 346 (502)
Q Consensus 309 IeNi~~f-GvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv 346 (502)
++..+.+ +.|++|-|. ..+.++.....+.+.+.|+
T Consensus 85 ~~~~~~~~~~p~~~~i~---g~~~~~~~~~a~~~~~~g~ 120 (314)
T 2e6f_A 85 ASDLHDYSKKPLFLSIS---GLSVEENVAMVRRLAPVAQ 120 (314)
T ss_dssp HHHTCCTTTCCEEEEEC---CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCcEEEEeC---CCCHHHHHHHHHHHHHhCC
Confidence 3333343 788888776 3567777777777777775
No 288
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=20.58 E-value=1.4e+02 Score=25.21 Aligned_cols=63 Identities=24% Similarity=0.235 Sum_probs=45.0
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 010734 304 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 375 (502)
Q Consensus 304 NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e~ 375 (502)
....-|..|+.-|-|.||-+|-- +..++......+++.|+. .-+-. .-.-+||.+.|-+-+..
T Consensus 39 dirdiiksmkdngkplvvfvnga---sqndvnefqneakkegvs-ydvlk-----stdpeeltqrvreflkt 101 (112)
T 2lnd_A 39 DIRDIIKSMKDNGKPLVVFVNGA---SQNDVNEFQNEAKKEGVS-YDVLK-----STDPEELTQRVREFLKT 101 (112)
T ss_dssp HHHHHHHHHTTCCSCEEEEECSC---CHHHHHHHHHHHHHHTCE-EEEEE-----CCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCCeEEEEecCc---ccccHHHHHHHHHhcCcc-hhhhc-----cCCHHHHHHHHHHHHHh
Confidence 34455788999999999999964 567777778889999984 32221 12357888888777653
No 289
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=20.39 E-value=25 Score=32.14 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.3
Q ss_pred HHhhcCCCCCCCCCCHHHhhhhccC
Q 010734 64 LKKLGISKTKPEDLTPEEINRFARL 88 (502)
Q Consensus 64 ~~~l~~~~~~p~~~~~~~~~~~~~l 88 (502)
++++||+++.-.+||++|+.++...
T Consensus 79 ~~~~gI~~~rv~~Lte~ei~~l~~~ 103 (145)
T 3bbn_M 79 LLDLNFDNKVTKDLSEEEVIILRKE 103 (145)
T ss_dssp GTTTTCCSCBTTSCCSSTTHHHHSS
T ss_pred HHHcCCCceEcCCCCHHHHHHHHHH
Confidence 5788998888999999999888755
No 290
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=20.35 E-value=2.3e+02 Score=26.47 Aligned_cols=115 Identities=16% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHhhcCCcEE--EEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcCccccCc-----cchhHHHHHHHHHhhcCCCC
Q 010734 309 IANTKAYGANVV--VAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGG-----KGAVDLGIAVQRACENVTQP 379 (502)
Q Consensus 309 IeNi~~fGvPvV--VAINrF~tDT~--~Ei~~v~~~c~~~Gv~~~~vs~~wakGG-----eGa~eLA~~Vv~a~e~~~~~ 379 (502)
++.....|...| +..-.-.++.+ +++..+.+.|++.|+. +.+- ..++|. -...++.+....+.+.+..-
T Consensus 105 v~~a~~~Ga~~v~~~l~~~~~~~~~~~~~~~~v~~~~~~~g~~-viv~-~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad~ 182 (273)
T 2qjg_A 105 VEEAIRMGADAVSIHVNVGSDEDWEAYRDLGMIAETCEYWGMP-LIAM-MYPRGKHIQNERDPELVAHAARLGAELGADI 182 (273)
T ss_dssp HHHHHHTTCSEEEEEEEETSTTHHHHHHHHHHHHHHHHHHTCC-EEEE-EEECSTTCSCTTCHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHcCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCC-EEEE-eCCCCcccCCCCCHhHHHHHHHHHHHcCCCE
Q ss_pred ccccCCCCCCHHHHHHHHHH--HhCCCceee--CHHHHHHHHHHHHCCCC
Q 010734 380 LKFLYPLDVSIKEKIDTIAR--SYGASGVEY--SEEAEKQIEMYTGQGFS 425 (502)
Q Consensus 380 fk~LY~~~~sI~eKIe~IA~--IYGA~~V~f--S~~A~kqLk~ie~~Gf~ 425 (502)
+..-|..+...-.++..... ++...++.- .+.+.+.++++-+.|.+
T Consensus 183 i~~~~~~~~~~l~~i~~~~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~ 232 (273)
T 2qjg_A 183 VKTSYTGDIDSFRDVVKGCPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAA 232 (273)
T ss_dssp EEECCCSSHHHHHHHHHHCSSCEEEECCSCCSSHHHHHHHHHHHHHHTCS
T ss_pred EEECCCCCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCc
No 291
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=20.29 E-value=1e+02 Score=30.42 Aligned_cols=43 Identities=12% Similarity=0.109 Sum_probs=30.9
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCHH----HHHHHHHHHHHcCCC
Q 010734 305 LARHIANTKAYGANVVVAVNMFATDSKA----ELNAVRNAAMAAGAF 347 (502)
Q Consensus 305 L~kHIeNi~~fGvPvVVAINrF~tDT~~----Ei~~v~~~c~~~Gv~ 347 (502)
|.|.+-.+...|+|+|+++|+-.--+++ +++.+.++-++.|..
T Consensus 106 i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~ 152 (307)
T 1t9h_A 106 LDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYD 152 (307)
T ss_dssp HHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCe
Confidence 5556666678999999999996643333 366677776778885
No 292
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=20.28 E-value=3.9e+02 Score=22.55 Aligned_cols=70 Identities=9% Similarity=0.013 Sum_probs=42.9
Q ss_pred hhHHHHHHHHhhcCCcEEEEecCCCCCC----HHH-HHHHHHHHHHcCCCeEEEcCcc------------ccC----ccc
Q 010734 303 VNLARHIANTKAYGANVVVAVNMFATDS----KAE-LNAVRNAAMAAGAFDAVVCSHH------------AHG----GKG 361 (502)
Q Consensus 303 ~NL~kHIeNi~~fGvPvVVAINrF~tDT----~~E-i~~v~~~c~~~Gv~~~~vs~~w------------akG----GeG 361 (502)
.||++-|+.+++-|.++|+.--..|... .++ -+.+++.|++.|+. ++ +.| .+| -+|
T Consensus 86 ~~l~~li~~~~~~~~~vil~~~~~p~~~~~~~~~~~n~~~~~~a~~~~v~-~i--D~~~~~~~~~~~~~~~Dg~Hpn~~G 162 (190)
T 1ivn_A 86 QTLRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVP-LL--PFFMEEVYLKPQWMQDDGIHPNRDA 162 (190)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCCCGGGCHHHHHHHHHHHHHHHHHTTCC-EE--CCTHHHHHTCGGGBCTTSSSBCGGG
T ss_pred HHHHHHHHHHHHcCCCEEEEeccCCcchhHHHHHHHHHHHHHHHHHcCCe-EE--ccHHhhccCCchhhcCCCCCCCHHH
Confidence 4677778888887876655421123221 122 34578889999985 43 222 232 467
Q ss_pred hhHHHHHHHHHhhc
Q 010734 362 AVDLGIAVQRACEN 375 (502)
Q Consensus 362 a~eLA~~Vv~a~e~ 375 (502)
...+|+.+.+.+.+
T Consensus 163 ~~~~a~~i~~~l~~ 176 (190)
T 1ivn_A 163 QPFIADWMAKQLQP 176 (190)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH
Confidence 77888888888764
No 293
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=20.20 E-value=3.7e+02 Score=25.50 Aligned_cols=117 Identities=6% Similarity=0.008 Sum_probs=72.1
Q ss_pred HHHhhcCCcEEEEe-----------c----CCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 010734 310 ANTKAYGANVVVAV-----------N----MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 374 (502)
Q Consensus 310 eNi~~fGvPvVVAI-----------N----rF~tDT~~Ei~~v~~~c~~~Gv~~~~vs~~wakGGeGa~eLA~~Vv~a~e 374 (502)
+.++++++|+|..- + ++..++..+...+.+++.+.|.+++++-.. ..+-+.++++.+.+.++
T Consensus 91 ~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~---~~~~g~~~~~~~~~~l~ 167 (387)
T 3i45_A 91 DFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAP---NYEYGQSAVARFKELLL 167 (387)
T ss_dssp HHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEEEECC---SSHHHHHHHHHHHHHHH
T ss_pred HHHHHcCceEEecCCCchhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEEEEeC---CchHhHHHHHHHHHHHH
Confidence 34567899988732 1 244567788889999999999888776542 33445566666666665
Q ss_pred cCCCCcc----ccCCC-CCCHHHHHHHHHHHhCCCcee---eCHHHHHHHHHHHHCCC-CCCCee
Q 010734 375 NVTQPLK----FLYPL-DVSIKEKIDTIARSYGASGVE---YSEEAEKQIEMYTGQGF-SGLPIC 430 (502)
Q Consensus 375 ~~~~~fk----~LY~~-~~sI~eKIe~IA~IYGA~~V~---fS~~A~kqLk~ie~~Gf-~~LPVC 430 (502)
+....++ ..|+. ..+...-+++|.+ -+++-|. +.+.+..-++++.++|+ ++.||.
T Consensus 168 ~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~-~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~i~ 231 (387)
T 3i45_A 168 AARPEVTFVAEQWPALYKLDAGPTVQALQQ-AEPEGLFNVLFGADLPKFVREGRVRGLFAGRQVV 231 (387)
T ss_dssp HHCTTCEEEEEECCCTTCCCHHHHHHHHHH-TCCSEEEECCCTTHHHHHHHHHHHHTSSTTCEEE
T ss_pred HhCCCcEEEeeecCCCCCcCHHHHHHHHHh-CCCCEEEEcCccHHHHHHHHHHHHcCCCCCCeEE
Confidence 4211222 23443 3456665555543 2444444 35667777888889897 456664
No 294
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=20.13 E-value=1.1e+02 Score=30.33 Aligned_cols=56 Identities=7% Similarity=-0.008 Sum_probs=40.2
Q ss_pred HHHHhhHHHHHHHHhhcCCcEEEEecCCCCC---CHHHHHHHHHHHHHcCCCeEEEcCc
Q 010734 299 EAGCVNLARHIANTKAYGANVVVAVNMFATD---SKAELNAVRNAAMAAGAFDAVVCSH 354 (502)
Q Consensus 299 ~~G~~NL~kHIeNi~~fGvPvVVAINrF~tD---T~~Ei~~v~~~c~~~Gv~~~~vs~~ 354 (502)
+.-+.++..+|+.++++|..|.+.+=.|+.. +.+.+..+.+.+.++|+..+.+++.
T Consensus 133 ~e~l~~~~~~v~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT 191 (337)
T 3ble_A 133 KEFFTDVSFVIEYAIKSGLKINVYLEDWSNGFRNSPDYVKSLVEHLSKEHIERIFLPDT 191 (337)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEETHHHHHHHCHHHHHHHHHHHHTSCCSEEEEECT
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCcCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 3346788899999999999988876543333 3455555556666789988888876
No 295
>4do7_A Amidohydrolase 2; enzyme function initiative, EFI, structural TIM-barrel fold, putative lactonase; 1.70A {Burkholderia multivorans} PDB: 4dlm_A 4dnm_A* 4dlf_A
Probab=20.12 E-value=2.9e+02 Score=26.13 Aligned_cols=48 Identities=21% Similarity=0.135 Sum_probs=35.0
Q ss_pred hhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHc-CCCeEEEcCccccC
Q 010734 303 VNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAA-GAFDAVVCSHHAHG 358 (502)
Q Consensus 303 ~NL~kHIeNi~~fGvPvVVAINrF~tDT~~Ei~~v~~~c~~~-Gv~~~~vs~~wakG 358 (502)
+-+.++++-++++|+|+++-+.. ..++.+.+.+++. +++ + +-+|+...
T Consensus 122 ~~~~~~~~~~~~~glpv~ih~~~------~~l~~l~~ll~~~P~l~-i-Vi~H~G~p 170 (303)
T 4do7_A 122 ADFARGVAWLQANDYVYDVLVFE------RQLPDVQAFCARHDAHW-L-VLDHAGKP 170 (303)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCG------GGHHHHHHHHHHCCSSC-E-EEGGGGCC
T ss_pred HHHHHHHHHHHHCCCeEEEecCH------HHHHHHHHHHHHCCCCC-E-EEeCCCCC
Confidence 46788999999999999997642 3455667778877 474 4 55777663
No 296
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=20.05 E-value=1.9e+02 Score=28.57 Aligned_cols=89 Identities=8% Similarity=0.007 Sum_probs=55.4
Q ss_pred CCCCeEEeeccccccccchhccccccccCCCCCCeEEEEeeehhhhhcCCCCCccCCCCCchhcccccHHHHHHHHhhHH
Q 010734 227 GPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLA 306 (502)
Q Consensus 227 ~~~dyvVTEAGFgaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~HGG~~~~~~~~pl~~~l~~eNl~AL~~G~~NL~ 306 (502)
+.-||||--++-|.+.-..-.+. .-|.+|+|++-. .-++.+..+|+..|.
T Consensus 243 ~~yD~ViiD~pp~~~~~~~~~l~--------~aD~vliv~~p~----------------------~~~~~~~~~~l~~l~ 292 (398)
T 3ez2_A 243 SDYDFILVDSGPHLDAFLKNALA--------SANILFTPLPPA----------------------TVDFHSSLKYVARLP 292 (398)
T ss_dssp TTCSEEEEEECSCCSHHHHHHHH--------HCSEEEEEECCS----------------------HHHHHHHHHHHHHHH
T ss_pred ccCCEEEEeCCCCccHHHHHHHH--------HCCEEEEEecCc----------------------hhhHHHHHHHHHHHH
Confidence 34599999988776433222221 247788877621 234567889999999
Q ss_pred HHHHHHhhcCCcE-----EEEecCCCCCCHHHHHHHHHHHHHcCC
Q 010734 307 RHIANTKAYGANV-----VVAVNMFATDSKAELNAVRNAAMAAGA 346 (502)
Q Consensus 307 kHIeNi~~fGvPv-----VVAINrF~tDT~~Ei~~v~~~c~~~Gv 346 (502)
+-++.++++|.++ |..+|.+... ...-+...+.++..|.
T Consensus 293 ~~~~~~~~~~~~~~~~giv~~~~~~~~~-~~~~~~~~~l~~~~g~ 336 (398)
T 3ez2_A 293 ELVKLISDEGCECQLATNIGFMSKLSNK-ADHKYCHSLAKEVFGG 336 (398)
T ss_dssp HHHHHHHHTSCCCCCCCEEEEEEEECSC-HHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHcCCCCceeEEEEEEecCCCc-hhHHHHHHHHHHHhcc
Confidence 9999999987653 5567777543 2222233444444554
Done!