BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010738
(502 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GKE|A Chain A, Crystal Structure Of Dicamba Monooxygenase
pdb|3GKE|B Chain B, Crystal Structure Of Dicamba Monooxygenase
pdb|3GKE|C Chain C, Crystal Structure Of Dicamba Monooxygenase
pdb|3GB4|A Chain A, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dicamba
pdb|3GB4|B Chain B, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dicamba
pdb|3GB4|C Chain C, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dicamba
pdb|3GOB|A Chain A, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dcsa
pdb|3GOB|B Chain B, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dcsa
pdb|3GOB|C Chain C, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dcsa
pdb|3GTE|A Chain A, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron
pdb|3GTE|B Chain B, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron
pdb|3GTE|C Chain C, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron
pdb|3GTS|A Chain A, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron And Dicamba
pdb|3GTS|B Chain B, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron And Dicamba
pdb|3GTS|C Chain C, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron And Dicamba
pdb|3GL0|A Chain A, Crystal Structure Of Dicamba Monooxygenase Bound To 3,6
Dichlorosalicylic Acid (Dcsa)
pdb|3GL0|B Chain B, Crystal Structure Of Dicamba Monooxygenase Bound To 3,6
Dichlorosalicylic Acid (Dcsa)
pdb|3GL0|C Chain C, Crystal Structure Of Dicamba Monooxygenase Bound To 3,6
Dichlorosalicylic Acid (Dcsa)
pdb|3GL2|A Chain A, Crystal Structure Of Dicamba Monooxygenase Bound To
Dicamba
pdb|3GL2|B Chain B, Crystal Structure Of Dicamba Monooxygenase Bound To
Dicamba
pdb|3GL2|C Chain C, Crystal Structure Of Dicamba Monooxygenase Bound To
Dicamba
Length = 349
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 6/129 (4%)
Query: 212 TRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV 271
T ++N W+ A +L + + + P ++R DG+ + + C HR PL G +
Sbjct: 3 TFVRNAWYVAALPEELSEKPL-GRTILDTPLALYRQPDGVVAALLDICPHRFAPLSDGIL 61
Query: 272 NEGRIQCPYHGWEYSTDGKCEKMP---STQLRNVKIKSLPCFEQEGMIWIWPGDEPPTAT 328
G +QCPYHG E+ G+C P + ++ ++S P E++ +IWIWPGD P
Sbjct: 62 VNGHLQCPYHGLEFDGGGQCVHNPHGNGARPASLNVRSFPVVERDALIWIWPGD--PALA 119
Query: 329 IPCLLPPSG 337
P +P G
Sbjct: 120 DPGAIPDFG 128
>pdb|3GKQ|A Chain A, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
pdb|3GKQ|B Chain B, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
pdb|3GKQ|C Chain C, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
pdb|3GKQ|D Chain D, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
pdb|3GKQ|E Chain E, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
pdb|3GKQ|F Chain F, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Novosphingobium Sp. Ka1
Length = 389
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 8/119 (6%)
Query: 214 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPL--HLGSV 271
+N W+PV S ++ + + VP E V+ DG+ + + C HR L +
Sbjct: 28 FRNHWYPVRLSAEVAEASPVPVQLLGEK-VLLNRVDGVVHAIADRCLHRGVTLSDKVECY 86
Query: 272 NEGRIQCPYHGWEYSTD-GKCEKM----PSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 325
++ I C YHGW Y D GK + S Q+ +K+ P E++G+++++ GD+ P
Sbjct: 87 SKATISCWYHGWTYRWDNGKLVDILTNPTSVQIGRHALKTYPVREEKGLVFLFVGDQEP 145
>pdb|3GCF|A Chain A, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|B Chain B, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|C Chain C, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|D Chain D, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|E Chain E, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|F Chain F, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|G Chain G, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|H Chain H, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|I Chain I, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|J Chain J, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|K Chain K, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|L Chain L, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|M Chain M, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|N Chain N, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|O Chain O, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
Length = 394
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 69/171 (40%), Gaps = 21/171 (12%)
Query: 175 TDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVP 234
T Q + P+ + S + K PR G N W P AF +L + V
Sbjct: 3 TSQEISDPAQATSSAQV---KWPRYLEATLG--------FDNHWHPAAFDHELAEGEFVA 51
Query: 235 FDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV--NEGRIQCPYHGWEYS-TDGKC 291
E ++ R K G + + CAHR P + G + C YHGW Y DG+
Sbjct: 52 VTMLGEKVLLTRAK-GEVKAIADGCAHRGVPFSKEPLCFKAGTVSCWYHGWTYDLDDGRL 110
Query: 292 EKM----PSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGF 338
+ S + + IK P +G+++++ GDE P A L P GF
Sbjct: 111 VDVLTSPGSPVIGKIGIKVYPVQVAQGVVFVFIGDEEPHALSEDL--PPGF 159
>pdb|1WW9|A Chain A, Crystal Structure Of The Terminal Oxygenase Component Of
Carbazole 1, 9a-dioxygenase, A Non-heme Iron Oxygenase
System Catalyzing The Novel Angular Dioxygenation For
Carbazole And Dioxin
pdb|2DE5|A Chain A, Crystal Structure Of The Electron Transfer Complex Between
Oxygenase And Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE5|B Chain B, Crystal Structure Of The Electron Transfer Complex Between
Oxygenase And Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE5|C Chain C, Crystal Structure Of The Electron Transfer Complex Between
Oxygenase And Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE6|A Chain A, The Reduced Complex Between Oxygenase And Ferredoxin In
Carbazole 1,9a-Dioxygenase
pdb|2DE6|B Chain B, The Reduced Complex Between Oxygenase And Ferredoxin In
Carbazole 1,9a-Dioxygenase
pdb|2DE6|C Chain C, The Reduced Complex Between Oxygenase And Ferredoxin In
Carbazole 1,9a-Dioxygenase
pdb|2DE7|A Chain A, The Substrate-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE7|B Chain B, The Substrate-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE7|C Chain C, The Substrate-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMG|A Chain A, Reduced Carbazole-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMG|B Chain B, Reduced Carbazole-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMG|C Chain C, Reduced Carbazole-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMH|A Chain A, Oxygen-Bound Complex Between Oxygenase And Ferredoxin In
Carbazole 1, 9a-Dioxygenase
pdb|3VMH|B Chain B, Oxygen-Bound Complex Between Oxygenase And Ferredoxin In
Carbazole 1, 9a-Dioxygenase
pdb|3VMH|C Chain C, Oxygen-Bound Complex Between Oxygenase And Ferredoxin In
Carbazole 1, 9a-Dioxygenase
pdb|3VMI|A Chain A, Carbazole- And Oxygen-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMI|B Chain B, Carbazole- And Oxygen-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMI|C Chain C, Carbazole- And Oxygen-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
Length = 392
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 13/141 (9%)
Query: 214 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--V 271
+N W+PV FS ++ + E ++ R DG C+++ C HR L +
Sbjct: 25 FRNHWYPVMFSKEINEGEPKTLKLLGENLLVNR-IDGKLYCLKDRCLHRGVQLSVKVECK 83
Query: 272 NEGRIQCPYHGWEYS-TDGK-CEKM---PSTQLRNVKIKSLPCFEQEGMIWIW--PGDEP 324
+ I C YH W Y DG C+ + S Q+ K+K+ P E +G ++I+ GD P
Sbjct: 84 TKSTITCWYHAWTYRWEDGVLCDILTNPTSAQIGRQKLKTYPVQEAKGCVFIYLGDGDPP 143
Query: 325 PTATIPCLLPPSGFEIHAEIV 345
P A PP+ + EI+
Sbjct: 144 PLARD---TPPNFLDDDMEIL 161
>pdb|3N0Q|A Chain A, Crystal Structure Of A Putative Aromatic-Ring
Hydroxylating Dioxygenase (Tm1040_3219) From
Silicibacter Sp. Tm1040 At 1 Resolution
Length = 409
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 243 VIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKC----EKMP 295
+I RG D + N C HR C G N ++ CPYH W Y DG+ + P
Sbjct: 68 IIVRGADNVIRAFHNACRHRGSVICKAKKG--NNPKLVCPYHQWTYELDGRLLWARDXGP 125
Query: 296 STQLRNVKIKSLPCFEQEGMIWIWPGDEPP 325
+ +K++ C E G+I+I DE P
Sbjct: 126 DFEPSRHGLKTVHCRELAGLIYICLADEAP 155
>pdb|3VCA|A Chain A, Quaternary Ammonium Oxidative Demethylation: X-Ray
Crystallographic, Resonance Raman And Uv-Visible
Spectroscopic Analysis Of A Rieske- Type Demethylase
pdb|3VCP|A Chain A, The 2.2 Angstrom Structure Of Stc2 With Proline Bound In
The Active Site
Length = 412
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 43/106 (40%), Gaps = 9/106 (8%)
Query: 243 VIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKC----EKMP 295
VI R +DG N+C HR C G V ++ CPYH W Y DGK + P
Sbjct: 70 VIVRSRDGEVRAFHNSCRHRGSLICKARQGQV--AKLVCPYHQWTYELDGKLIWANDMGP 127
Query: 296 STQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIH 341
+K + +G+I+I D PP L E+H
Sbjct: 128 DFDASKYGLKPVNLRNLDGLIYICLSDTPPDFQTFAQLARPYLEVH 173
>pdb|2ZYL|A Chain A, Crystal Structure Of 3-Ketosteroid-9-Alpha-Hydroxylase
(Ksha) From M. Tuberculosis
Length = 386
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 4/122 (3%)
Query: 212 TRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV 271
TR W + + D + + F V+F G + C H L G+V
Sbjct: 20 TRYARGWHCLGVAKDYLEGKPHGVEAFGTKLVVFADSHGDLKVLDGYCRHMGGDLSEGTV 79
Query: 272 NEGRIQCPYHGWEYSTDGKCEKMPSTQL--RNVKIKSLPCFEQEGMIWIWPGDE--PPTA 327
+ CP+H W + DG+C+ +P + R + +S + G++++W E PP
Sbjct: 80 KGDEVACPFHDWRWGGDGRCKLVPYARRTPRMARTRSWTTDVRSGLLFVWHDHEGNPPDP 139
Query: 328 TI 329
+
Sbjct: 140 AV 141
>pdb|3EN1|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase
pdb|3EQQ|A Chain A, Apo Toluene 2,3-Dioxygenase
Length = 450
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295
E+P V+ R KD N C HR + + N C YHGW Y T G +P
Sbjct: 76 EDPVVVVRQKDASIAVFLNQCRHRGMRICRADAGNAKAFTCSYHGWAYDTAGNLVNVP 133
>pdb|1VCK|A Chain A, Crystal Structure Of Ferredoxin Component Of Carbazole
1,9a- Dioxygenase Of Pseudomonas Resinovorans Strain
Ca10
pdb|2DE5|D Chain D, Crystal Structure Of The Electron Transfer Complex Between
Oxygenase And Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE5|E Chain E, Crystal Structure Of The Electron Transfer Complex Between
Oxygenase And Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE5|F Chain F, Crystal Structure Of The Electron Transfer Complex Between
Oxygenase And Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE6|D Chain D, The Reduced Complex Between Oxygenase And Ferredoxin In
Carbazole 1,9a-Dioxygenase
pdb|2DE6|E Chain E, The Reduced Complex Between Oxygenase And Ferredoxin In
Carbazole 1,9a-Dioxygenase
pdb|2DE6|F Chain F, The Reduced Complex Between Oxygenase And Ferredoxin In
Carbazole 1,9a-Dioxygenase
pdb|2DE7|D Chain D, The Substrate-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE7|E Chain E, The Substrate-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE7|F Chain F, The Substrate-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMG|D Chain D, Reduced Carbazole-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMG|E Chain E, Reduced Carbazole-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMG|F Chain F, Reduced Carbazole-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMH|D Chain D, Oxygen-Bound Complex Between Oxygenase And Ferredoxin In
Carbazole 1, 9a-Dioxygenase
pdb|3VMH|E Chain E, Oxygen-Bound Complex Between Oxygenase And Ferredoxin In
Carbazole 1, 9a-Dioxygenase
pdb|3VMH|F Chain F, Oxygen-Bound Complex Between Oxygenase And Ferredoxin In
Carbazole 1, 9a-Dioxygenase
pdb|3VMI|D Chain D, Carbazole- And Oxygen-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMI|E Chain E, Carbazole- And Oxygen-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMI|F Chain F, Carbazole- And Oxygen-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
Length = 115
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 214 LKNFWFPVAFSTDLKDDTMVPFD-CFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVN 272
+ W V ++D++ T+ + P ++R D ++TC H L G+++
Sbjct: 1 MNQIWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYA-TEDTCTHGIASLSEGTLD 59
Query: 273 EGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWI 318
I+CP+HG ++ C MP++ V + +EG +++
Sbjct: 60 GDVIECPFHGGAFNV---CTGMPASSPCTVPLGVFEVEVKEGEVYV 102
>pdb|2BMO|A Chain A, The Crystal Structure Of Nitrobenzene Dioxygenase
pdb|2BMQ|A Chain A, The Crystal Structure Of Nitrobenzene Dioxygenase In
Complex With Nitrobenzene
pdb|2BMR|A Chain A, The Crystal Structure Of Nitrobenzene Dioxygenase In
Complex With 3-Nitrotoluene
Length = 447
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 243 VIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295
++ R DG N C HR L H + N C YHGW Y ++G+ + +P
Sbjct: 63 IVSRQNDGSVRAFLNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYGSNGELQSVP 116
>pdb|1WQL|A Chain A, Cumene Dioxygenase (Cuma1a2) From Pseudomonas Fluorescens
Ip01
Length = 459
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP 295
E+P ++ R KD N C HR + N C YHGW Y T G +P
Sbjct: 81 EDPVIVVRQKDRSIKVFLNQCRHRGMRIERSDFGNAKSFTCTYHGWAYDTAGNLVNVP 138
>pdb|2B1X|A Chain A, Crystal Structure Of Naphthalene 1,2-dioxygenase From
Rhodococcus Sp.
pdb|2B1X|C Chain C, Crystal Structure Of Naphthalene 1,2-dioxygenase From
Rhodococcus Sp.
pdb|2B1X|E Chain E, Crystal Structure Of Naphthalene 1,2-dioxygenase From
Rhodococcus Sp.
pdb|2B24|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase From
Rhodococcus Sp. Bound To Indole
pdb|2B24|C Chain C, Crystal Structure Of Naphthalene 1,2-Dioxygenase From
Rhodococcus Sp. Bound To Indole
pdb|2B24|E Chain E, Crystal Structure Of Naphthalene 1,2-Dioxygenase From
Rhodococcus Sp. Bound To Indole
Length = 470
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295
E+ +++ R + G N C HR C +G N +CPYHGW YS G +P
Sbjct: 68 EDQFIVCRDEGGEIRGHLNACRHRGMQVCRAEMG--NTSHFRCPYHGWTYSNTGSLVGVP 125
Query: 296 STQ 298
+ +
Sbjct: 126 AGK 128
>pdb|2CKF|A Chain A, Crystal Structure Of The Terminal Component Of The Pah-
Hydroxylating Dioxygenase From Sphingomonas Sp Chy-1
pdb|2CKF|C Chain C, Crystal Structure Of The Terminal Component Of The Pah-
Hydroxylating Dioxygenase From Sphingomonas Sp Chy-1
pdb|2CKF|E Chain E, Crystal Structure Of The Terminal Component Of The Pah-
Hydroxylating Dioxygenase From Sphingomonas Sp Chy-1
Length = 454
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295
E+ ++ DG N+C HR + H S N C YHGW Y DG +P
Sbjct: 60 EDKIILSHQSDGTFRAFINSCTHRGNQICHADSGNAKAFVCNYHGWVYGQDGSLVDVP 117
>pdb|1ULI|A Chain A, Biphenyl Dioxygenase (bpha1a2) Derived From Rhodococcus
Sp. Strain Rha1
pdb|1ULI|C Chain C, Biphenyl Dioxygenase (bpha1a2) Derived From Rhodococcus
Sp. Strain Rha1
pdb|1ULI|E Chain E, Biphenyl Dioxygenase (bpha1a2) Derived From Rhodococcus
Sp. Strain Rha1
pdb|1ULJ|A Chain A, Biphenyl Dioxygenase (Bpha1a2) In Complex With The
Substrate
pdb|1ULJ|C Chain C, Biphenyl Dioxygenase (Bpha1a2) In Complex With The
Substrate
pdb|1ULJ|E Chain E, Biphenyl Dioxygenase (Bpha1a2) In Complex With The
Substrate
Length = 460
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295
E+P ++ R K+G N C HR + N C YHGW Y T G +P
Sbjct: 78 EDPVMVVRQKNGEIRVFLNQCRHRGMRICRADGGNAKSFTCSYHGWAYDTGGNLVSVP 135
>pdb|2GBW|A Chain A, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1
pdb|2GBW|C Chain C, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1
pdb|2GBW|E Chain E, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1
pdb|2GBX|A Chain A, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1 Bound To Biphenyl
pdb|2GBX|C Chain C, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1 Bound To Biphenyl
pdb|2GBX|E Chain E, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1 Bound To Biphenyl
Length = 454
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295
E+ ++ DG N+C+HR + H S N C YHGW + DG +P
Sbjct: 60 EDKVILSHQSDGTFRAFINSCSHRGNQICHADSGNAKAFVCNYHGWVFGQDGSLVDVP 117
>pdb|2XSH|A Chain A, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|C Chain C, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|E Chain E, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|G Chain G, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|I Chain I, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|K Chain K, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSO|A Chain A, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|C Chain C, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|E Chain E, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|G Chain G, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|I Chain I, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|K Chain K, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|M Chain M, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|O Chain O, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|Q Chain Q, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|S Chain S, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|U Chain U, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|W Chain W, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
Length = 459
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295
E+P V+ R KD N C HR + + N C YHGW Y GK +P
Sbjct: 80 EDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVP 137
>pdb|2XR8|A Chain A, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|C Chain C, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|E Chain E, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|G Chain G, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|I Chain I, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|K Chain K, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|M Chain M, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|O Chain O, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|Q Chain Q, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|S Chain S, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|U Chain U, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|W Chain W, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XRX|A Chain A, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|C Chain C, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|E Chain E, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|G Chain G, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|I Chain I, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|K Chain K, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|M Chain M, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|O Chain O, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|Q Chain Q, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|S Chain S, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|U Chain U, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|W Chain W, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
Length = 459
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295
E+P V+ R KD N C HR + + N C YHGW Y GK +P
Sbjct: 80 EDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVP 137
>pdb|2YFI|A Chain A, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|C Chain C, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|E Chain E, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|G Chain G, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|I Chain I, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|K Chain K, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFJ|A Chain A, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|C Chain C, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|E Chain E, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|G Chain G, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|I Chain I, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|K Chain K, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFL|A Chain A, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|C Chain C, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|E Chain E, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|G Chain G, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|I Chain I, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|K Chain K, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
Length = 459
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295
E+P V+ R KD N C HR + + N C YHGW Y GK +P
Sbjct: 80 EDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVP 137
>pdb|1NDO|A Chain A, Napthalene 1,2-Dioxygenase
pdb|1NDO|C Chain C, Napthalene 1,2-Dioxygenase
pdb|1NDO|E Chain E, Napthalene 1,2-Dioxygenase
pdb|1EG9|A Chain A, Naphthalene 1,2-Dioxygenase With Indole Bound In The
Active Site.
pdb|1O7M|A Chain A, Naphthalene 1,2-Dioxygenase, Binary Complex With Dioxygen
pdb|1O7N|A Chain A, Naphthalene 1,2-dioxygenase, Ternary Complex With Dioxygen
And Indole
pdb|1O7P|A Chain A, Naphthalene 1,2-Dioxygenase, Product Complex
pdb|1O7W|A Chain A, Naphthalene 1,2-Dioxygenase, Fully Reduced Form
pdb|1O7G|A Chain A, Naphthalene 1,2-Dioxygenase With Naphthalene Bound In The
Active Site.
pdb|1O7H|A Chain A, Naphthalene 1,2-Dioxygenase With Oxidized Rieske Iron
Sulphur Center Site.
pdb|1UUV|A Chain A, Naphthalene 1,2-Dioxygenase With Nitric Oxide And Indole
Bound In The Active Site.
pdb|1UUW|A Chain A, Naphthalene 1,2-dioxygenase With Nitric Oxide Bound In The
Active Site.
pdb|2HMK|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase Bound To
Phenanthrene
pdb|2HMM|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase Bound To
Anthracene
pdb|2HMO|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase Bound To
3- Nitrotoluene
Length = 449
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 243 VIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295
++ R DG N C HR L + + N C YHGW + ++G+ + +P
Sbjct: 65 IVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVP 118
>pdb|2HMJ|A Chain A, Crystal Structure Of The Naphthalene 1,2-Dioxygenase
Phe-352-Val Mutant.
pdb|2HML|A Chain A, Crystal Structure Of The Naphthalene 1,2-Dioxygenase F352v
Mutant Bound To Phenanthrene.
pdb|2HMN|A Chain A, Crystal Structure Of The Naphthalene 1,2-Dioxygenase F352v
Mutant Bound To Anthracene
Length = 449
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 243 VIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295
++ R DG N C HR L + + N C YHGW + ++G+ + +P
Sbjct: 65 IVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVP 118
>pdb|3GZX|A Chain A, Crystal Structure Of The Biphenyl Dioxygenase In Complex
With Biphenyl From Comamonas Testosteroni Sp. Strain
B-356
pdb|3GZY|A Chain A, Crystal Structure Of The Biphenyl Dioxygenase From
Comamonas Testosteroni Sp. Strain B-356
Length = 457
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295
E+P ++ R KD N C HR + N C YHGW Y G +P
Sbjct: 80 EDPVIMVRQKDQSIKVFLNQCRHRGMRIVRSDGGNAKAFTCTYHGWAYDIAGNLVNVP 137
>pdb|3APU|A Chain A, Crystal Structure Of The A Variant Of Human Alpha1-Acid
Glycoprotein
pdb|3APU|B Chain B, Crystal Structure Of The A Variant Of Human Alpha1-Acid
Glycoprotein
pdb|3APV|A Chain A, Crystal Structure Of The A Variant Of Human Alpha1-Acid
Glycoprotein And Amitriptyline Complex
pdb|3APV|B Chain B, Crystal Structure Of The A Variant Of Human Alpha1-Acid
Glycoprotein And Amitriptyline Complex
pdb|3APW|A Chain A, Crystal Structure Of The A Variant Of Human Alpha1-Acid
Glycoprotein And Disopyramide Complex
pdb|3APW|B Chain B, Crystal Structure Of The A Variant Of Human Alpha1-Acid
Glycoprotein And Disopyramide Complex
pdb|3APX|A Chain A, Crystal Structure Of The A Variant Of Human Alpha1-Acid
Glycoprotein And Chlorpromazine Complex
Length = 190
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 42 GGLVDKKSAWSTLFDVEDPRSKVPQCKGKFLDVNQALEVARYDIQYCDWR 91
G +D + W F + P + Q G+F + L + R D+ Y DW+
Sbjct: 114 GSYLDDEKNWGLSFYADKPETTKEQL-GEFYEALDCLRIPRSDVMYTDWK 162
>pdb|2YIU|C Chain C, X-Ray Structure Of The Dimeric Cytochrome Bc1 Complex From
The Soil Bacterium Paracoccus Denitrificans At 2.7
Angstrom Resolution
pdb|2YIU|F Chain F, X-Ray Structure Of The Dimeric Cytochrome Bc1 Complex From
The Soil Bacterium Paracoccus Denitrificans At 2.7
Angstrom Resolution
Length = 190
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 259 CAHRAC-PLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSL 307
C H C P+ G+ + G CP HG Y T G+ + P+ Q ++ +
Sbjct: 132 CTHLGCVPIGDGAGDFGGWFCPCHGSHYDTSGRIRRGPAPQNLHIPVAEF 181
>pdb|1TFV|A Chain A, Crystal Structure Of A Buffalo Signaling Glycoprotein
(Spb-40) Secreted During Involution
pdb|2O9O|A Chain A, Crystal Structure Of The Buffalo Secretory Signalling
Glycoprotein At 2.8 A Resolution
pdb|2QF8|A Chain A, Crystal Structure Of The Complex Of Buffalo Secretory
Glycoprotein With Tetrasaccharide At 2.8a Resolution
Length = 361
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 282 GWEYSTDGKCEKMPSTQLRNVKIKSLP------CFEQEGMIWIWPG 321
GW Y + + TQ R IKS+P F+ + W+WPG
Sbjct: 77 GWNYGSQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLWPG 122
>pdb|2ZT9|D Chain D, Crystal Structure Of The Cytochrome B6f Complex From
Nostoc Sp. Pcc 7120
pdb|4H44|D Chain D, 2.70 A Cytochrome B6f Complex Structure From Nostoc Pcc
7120
Length = 179
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 224 STDLKDDTMVPFDCFEEPWVIFRGKDGIPGC-VQNTCAHRACPLHLGSVNEGRIQCPYHG 282
S ++ D T+V + +++ K+ I + C H C + + E + +CP HG
Sbjct: 72 SHNVGDRTLVQGLKGDPTYIVVESKEAITDYGINAVCTHLGCVVPWNAA-ENKFKCPCHG 130
Query: 283 WEYSTDGKCEKMPS 296
+Y GK + P+
Sbjct: 131 SQYDATGKVVRGPA 144
>pdb|3CWB|E Chain E, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|R Chain R, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|E Chain E, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|R Chain R, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|E Chain E, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|R Chain R, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|E Chain E, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|R Chain R, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|E Chain E, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|R Chain R, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|E Chain E, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|R Chain R, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|E Chain E, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|R Chain R, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|E Chain E, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|R Chain R, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|E Chain E, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|R Chain R, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|E Chain E, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|R Chain R, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|E Chain E, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|R Chain R, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|E Chain E, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|R Chain R, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|E Chain E, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|R Chain R, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 196
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 10/55 (18%)
Query: 242 WVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPS 296
WVI G C H C S + G CP HG Y G+ K P+
Sbjct: 132 WVILVG----------VCTHLGCVPIANSGDFGGYYCPCHGSHYDASGRIRKGPA 176
>pdb|2ZYI|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Calcium
pdb|2ZYI|B Chain B, A. Fulgidus Lipase With Fatty Acid Fragment And Calcium
Length = 475
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 64/146 (43%), Gaps = 14/146 (9%)
Query: 2 TAIATAAALSLPISLYRPAKINT------KKSVRGGFRVFALFGEEGGLVDKKSAWSTLF 55
T+ T A + I+ Y+PA + V+G F FA G+ G W +++
Sbjct: 215 TSPETFAVMFEFINGYKPATTDIVPQDGDYVKVKGKFLAFATNGDVSG-------WLSIY 267
Query: 56 DVEDPRSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPL-A 114
+++ ++ + KF+ V EV Q +++ R+D I+ + + V + L A
Sbjct: 268 PIDENGKRLTRLPVKFMRVKGDFEVRLRKGQLYEFQFRKDFSPIIYHYYRAPFVRDDLWA 327
Query: 115 RDYKSIGTMKKELAELQEDLAQAHRQ 140
R S + EL L E L+ A ++
Sbjct: 328 RFLVSKPPLDVELLILPERLSPAAKE 353
>pdb|2ZYH|A Chain A, Mutant A. Fulgidus Lipase S136a Complexed With Fatty Acid
Fragment
pdb|2ZYH|B Chain B, Mutant A. Fulgidus Lipase S136a Complexed With Fatty Acid
Fragment
Length = 475
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 64/146 (43%), Gaps = 14/146 (9%)
Query: 2 TAIATAAALSLPISLYRPAKINT------KKSVRGGFRVFALFGEEGGLVDKKSAWSTLF 55
T+ T A + I+ Y+PA + V+G F FA G+ G W +++
Sbjct: 215 TSPETFAVMFEFINGYKPATTDIVPQDGDYVKVKGKFLAFATNGDVSG-------WLSIY 267
Query: 56 DVEDPRSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPL-A 114
+++ ++ + KF+ V EV Q +++ R+D I+ + + V + L A
Sbjct: 268 PIDENGKRLTRLPVKFMRVKGDFEVRLRKGQLYEFQFRKDFSPIIYHYYRAPFVRDDLWA 327
Query: 115 RDYKSIGTMKKELAELQEDLAQAHRQ 140
R S + EL L E L+ A ++
Sbjct: 328 RFLVSKPPLDVELLILPERLSPAAKE 353
>pdb|2ZYS|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Chloride
Length = 479
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 64/146 (43%), Gaps = 14/146 (9%)
Query: 2 TAIATAAALSLPISLYRPAKINT------KKSVRGGFRVFALFGEEGGLVDKKSAWSTLF 55
T+ T A + I+ Y+PA + V+G F FA G+ G W +++
Sbjct: 215 TSPETFAVMFEFINGYKPATTDIVPQDGDYVKVKGKFLAFATNGDVSG-------WLSIY 267
Query: 56 DVEDPRSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPL-A 114
+++ ++ + KF+ V EV Q +++ R+D I+ + + V + L A
Sbjct: 268 PIDENGKRLTRLPVKFMRVKGDFEVRLRKGQLYEFQFRKDFSPIIYHYYRAPFVRDDLWA 327
Query: 115 RDYKSIGTMKKELAELQEDLAQAHRQ 140
R S + EL L E L+ A ++
Sbjct: 328 RFLVSKPPLDVELLILPERLSPAAKE 353
>pdb|2ZYR|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Magnesium
pdb|2ZYR|B Chain B, A. Fulgidus Lipase With Fatty Acid Fragment And Magnesium
Length = 484
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 64/146 (43%), Gaps = 14/146 (9%)
Query: 2 TAIATAAALSLPISLYRPAKINT------KKSVRGGFRVFALFGEEGGLVDKKSAWSTLF 55
T+ T A + I+ Y+PA + V+G F FA G+ G W +++
Sbjct: 215 TSPETFAVMFEFINGYKPATTDIVPQDGDYVKVKGKFLAFATNGDVSG-------WLSIY 267
Query: 56 DVEDPRSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPL-A 114
+++ ++ + KF+ V EV Q +++ R+D I+ + + V + L A
Sbjct: 268 PIDENGKRLTRLPVKFMRVKGDFEVRLRKGQLYEFQFRKDFSPIIYHYYRAPFVRDDLWA 327
Query: 115 RDYKSIGTMKKELAELQEDLAQAHRQ 140
R S + EL L E L+ A ++
Sbjct: 328 RFLVSKPPLDVELLILPERLSPAAKE 353
>pdb|3AZC|A Chain A, Crystal Structure Of The Soluble Part Of Cytochrome B6f
Complex Iron- Sulfur Subunit From Thermosynechococcus
Elongatus Bp-1
Length = 133
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 259 CAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPS 296
C H C + +V+E + CP HG +Y + GK + P+
Sbjct: 61 CTHLGCVVPW-NVSENKFICPCHGSQYDSTGKVVRGPA 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,100,800
Number of Sequences: 62578
Number of extensions: 622875
Number of successful extensions: 1376
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1346
Number of HSP's gapped (non-prelim): 40
length of query: 502
length of database: 14,973,337
effective HSP length: 103
effective length of query: 399
effective length of database: 8,527,803
effective search space: 3402593397
effective search space used: 3402593397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)