Query 010738
Match_columns 502
No_of_seqs 431 out of 1931
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 04:00:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010738.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010738hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02281 chlorophyllide a oxyg 100.0 6E-116 1E-120 934.7 32.5 380 1-380 1-383 (536)
2 TIGR03228 anthran_1_2_A anthra 100.0 2.2E-37 4.7E-42 328.7 11.7 180 178-375 16-219 (438)
3 COG4638 HcaE Phenylpropionate 100.0 2.8E-36 6E-41 313.0 14.5 184 178-378 5-201 (367)
4 TIGR03229 benzo_1_2_benA benzo 100.0 8E-36 1.7E-40 316.7 13.4 179 178-375 16-221 (433)
5 PLN02518 pheophorbide a oxygen 100.0 4.1E-34 8.9E-39 310.0 17.3 166 211-377 84-268 (539)
6 PLN00095 chlorophyllide a oxyg 100.0 1.3E-33 2.9E-38 291.8 15.3 163 212-374 67-252 (394)
7 cd03479 Rieske_RO_Alpha_PhDO_l 100.0 6E-32 1.3E-36 248.0 12.3 132 201-332 5-142 (144)
8 cd04337 Rieske_RO_Alpha_Cao Ca 100.0 1.1E-30 2.4E-35 235.7 12.3 122 204-325 4-125 (129)
9 cd03545 Rieske_RO_Alpha_OHBDO_ 100.0 1.7E-29 3.7E-34 233.5 11.7 131 179-325 3-148 (150)
10 cd03537 Rieske_RO_Alpha_PrnD T 100.0 4.3E-29 9.3E-34 223.9 11.6 110 216-326 2-120 (123)
11 cd04338 Rieske_RO_Alpha_Tic55 100.0 5.1E-29 1.1E-33 226.1 12.1 115 211-325 11-130 (134)
12 cd03531 Rieske_RO_Alpha_KSH Th 99.9 9.1E-28 2E-32 212.3 11.7 109 217-325 1-111 (115)
13 cd03538 Rieske_RO_Alpha_AntDO 99.9 9.1E-28 2E-32 221.0 11.4 127 182-325 4-144 (146)
14 cd03532 Rieske_RO_Alpha_VanA_D 99.9 1.2E-27 2.6E-32 211.6 11.5 109 214-323 2-112 (116)
15 cd03480 Rieske_RO_Alpha_PaO Ri 99.9 9.1E-28 2E-32 219.0 10.5 113 213-325 13-134 (138)
16 cd03541 Rieske_RO_Alpha_CMO Ri 99.9 2.6E-27 5.7E-32 210.8 11.0 107 217-323 1-114 (118)
17 cd03539 Rieske_RO_Alpha_S5H Th 99.9 2.3E-27 4.9E-32 214.2 10.4 108 218-325 1-127 (129)
18 cd03548 Rieske_RO_Alpha_OMO_CA 99.9 5.3E-27 1.1E-31 213.2 11.9 111 213-324 10-127 (136)
19 cd03472 Rieske_RO_Alpha_BPDO_l 99.9 4.1E-27 8.8E-32 212.2 10.9 115 211-325 2-126 (128)
20 cd03469 Rieske_RO_Alpha_N Ries 99.9 4.9E-26 1.1E-30 199.9 10.4 107 218-324 1-115 (118)
21 cd03535 Rieske_RO_Alpha_NDO Ri 99.9 9.8E-26 2.1E-30 201.6 10.9 110 216-325 1-121 (123)
22 cd03536 Rieske_RO_Alpha_DTDO T 99.9 1.6E-25 3.4E-30 200.3 11.1 108 218-325 1-119 (123)
23 cd03542 Rieske_RO_Alpha_HBDO R 99.9 1.5E-24 3.3E-29 194.3 11.0 108 218-325 1-121 (123)
24 cd03528 Rieske_RO_ferredoxin R 99.9 3E-24 6.5E-29 183.0 10.4 96 218-318 1-97 (98)
25 cd03530 Rieske_NirD_small_Baci 99.9 9.4E-24 2E-28 180.5 10.3 97 218-319 1-98 (98)
26 cd03474 Rieske_T4moC Toluene-4 99.9 1.7E-23 3.8E-28 182.0 11.7 103 218-325 1-104 (108)
27 TIGR02377 MocE_fam_FeS Rieske 99.9 1.2E-22 2.6E-27 175.6 10.5 99 217-319 1-100 (101)
28 cd03529 Rieske_NirD Assimilato 99.9 1.3E-22 2.9E-27 175.5 10.0 96 218-318 1-102 (103)
29 TIGR02378 nirD_assim_sml nitri 99.9 1.2E-22 2.6E-27 176.1 9.7 99 217-320 1-105 (105)
30 cd03478 Rieske_AIFL_N AIFL (ap 99.9 3E-22 6.4E-27 170.5 8.9 92 221-317 3-95 (95)
31 PRK09965 3-phenylpropionate di 99.9 5E-22 1.1E-26 173.0 10.1 101 217-323 2-104 (106)
32 PF00355 Rieske: Rieske [2Fe-2 99.8 6.9E-21 1.5E-25 161.8 7.9 93 217-314 1-97 (97)
33 PF13806 Rieske_2: Rieske-like 99.8 2.4E-20 5.2E-25 162.7 9.7 98 217-319 1-104 (104)
34 cd03467 Rieske Rieske domain; 99.8 4.8E-20 1E-24 157.3 9.9 95 218-316 1-97 (98)
35 PRK09511 nirD nitrite reductas 99.8 8.5E-20 1.8E-24 160.2 9.9 98 217-319 3-107 (108)
36 cd03477 Rieske_YhfW_C YhfW fam 99.8 2.5E-19 5.5E-24 152.7 8.5 87 221-312 2-88 (91)
37 COG2146 {NirD} Ferredoxin subu 99.8 4.1E-19 8.8E-24 155.6 9.9 101 216-320 3-105 (106)
38 cd03476 Rieske_ArOX_small Smal 99.7 1.6E-17 3.5E-22 149.8 9.5 95 220-319 5-114 (126)
39 cd03471 Rieske_cytochrome_b6f 99.7 1.8E-16 3.9E-21 142.8 10.1 89 229-323 22-114 (126)
40 TIGR02694 arsenite_ox_S arseni 99.6 1.7E-15 3.7E-20 137.2 9.4 94 220-318 8-115 (129)
41 cd03470 Rieske_cytochrome_bc1 99.6 6.1E-15 1.3E-19 133.1 10.1 92 223-318 5-125 (126)
42 cd03473 Rieske_CMP_Neu5Ac_hydr 99.6 3.2E-15 6.9E-20 130.8 7.4 72 224-296 14-89 (107)
43 PRK13474 cytochrome b6-f compl 99.5 3.6E-13 7.8E-18 128.3 10.7 87 228-320 73-163 (178)
44 TIGR01416 Rieske_proteo ubiqui 99.3 1.3E-11 2.8E-16 117.3 10.2 93 217-314 40-168 (174)
45 cd03475 Rieske_SoxF_SoxL SoxF 99.0 2E-09 4.2E-14 101.9 9.1 68 248-319 73-159 (171)
46 COG0723 QcrA Rieske Fe-S prote 98.6 9.1E-08 2E-12 90.8 6.3 76 239-318 83-164 (177)
47 cd00680 RHO_alpha_C C-terminal 98.5 2.1E-07 4.5E-12 85.7 6.0 33 344-376 3-35 (188)
48 cd08885 RHO_alpha_C_1 C-termin 98.3 5.1E-07 1.1E-11 85.3 4.8 32 344-375 4-35 (190)
49 cd08878 RHO_alpha_C_DMO-like C 98.2 2.6E-06 5.6E-11 79.0 5.9 33 345-377 5-37 (196)
50 TIGR03171 soxL2 Rieske iron-su 98.1 4.4E-06 9.6E-11 85.7 6.5 69 247-319 173-276 (321)
51 cd08886 RHO_alpha_C_2 C-termin 98.1 7.2E-06 1.6E-10 77.9 7.3 32 344-375 4-35 (182)
52 KOG1671 Ubiquinol cytochrome c 98.1 4.1E-06 8.9E-11 80.5 5.4 75 223-297 91-191 (210)
53 cd08883 RHO_alpha_C_CMO-like C 98.0 8E-06 1.7E-10 76.8 6.4 32 344-375 4-35 (175)
54 cd08887 RHO_alpha_C_3 C-termin 97.9 4.1E-06 8.9E-11 78.3 1.0 32 344-375 4-35 (185)
55 cd08884 RHO_alpha_C_GbcA-like 97.9 2.2E-05 4.7E-10 75.9 5.9 38 337-374 7-44 (205)
56 PF00848 Ring_hydroxyl_A: Ring 97.4 1.2E-05 2.6E-10 74.8 -3.5 32 345-376 11-42 (209)
57 cd08879 RHO_alpha_C_AntDO-like 97.3 9E-05 2E-09 73.5 1.5 32 343-374 3-34 (237)
58 cd08881 RHO_alpha_C_NDO-like C 97.2 0.00013 2.8E-09 71.2 0.9 34 343-376 8-42 (206)
59 cd08880 RHO_alpha_C_ahdA1c-lik 96.9 0.0002 4.4E-09 70.4 -0.0 33 343-375 3-37 (222)
60 cd08882 RHO_alpha_C_MupW-like 96.9 0.00042 9.1E-09 69.1 1.8 30 344-373 4-33 (243)
61 PF11723 Aromatic_hydrox: Homo 94.8 0.018 3.9E-07 57.4 2.5 36 336-373 21-56 (240)
62 KOG1336 Monodehydroascorbate/f 94.3 0.022 4.7E-07 61.9 1.8 37 261-297 1-38 (478)
63 PRK14127 cell division protein 86.5 2 4.4E-05 38.3 6.2 42 105-149 27-68 (109)
64 PRK00888 ftsB cell division pr 75.1 17 0.00036 32.1 7.9 50 119-168 28-77 (105)
65 PRK03578 hscB co-chaperone Hsc 72.6 21 0.00046 34.2 8.6 89 72-163 57-165 (176)
66 PF05546 She9_MDM33: She9 / Md 69.4 14 0.0003 36.6 6.5 57 109-166 24-80 (207)
67 PF13118 DUF3972: Protein of u 68.9 14 0.00029 33.9 5.9 49 96-144 69-118 (126)
68 PRK14549 50S ribosomal protein 65.9 24 0.00053 28.8 6.4 46 118-163 12-62 (69)
69 TIGR02449 conserved hypothetic 64.3 34 0.00074 27.9 6.8 59 102-160 5-63 (65)
70 PF07820 TraC: TraC-like prote 62.9 52 0.0011 28.6 8.0 33 117-149 1-33 (92)
71 cd00427 Ribosomal_L29_HIP Ribo 62.7 24 0.00052 27.6 5.6 43 118-160 6-52 (57)
72 PRK00294 hscB co-chaperone Hsc 62.3 42 0.00091 32.2 8.3 91 70-163 53-162 (173)
73 PF11559 ADIP: Afadin- and alp 61.8 53 0.0012 30.2 8.7 87 68-158 27-113 (151)
74 PF04977 DivIC: Septum formati 60.7 27 0.00059 28.0 5.9 54 115-168 14-67 (80)
75 PF13334 DUF4094: Domain of un 60.3 6.5 0.00014 34.2 2.2 32 108-139 63-94 (95)
76 PRK14161 heat shock protein Gr 58.9 42 0.00091 32.4 7.6 54 98-157 12-65 (178)
77 PRK09039 hypothetical protein; 57.3 49 0.0011 35.1 8.5 39 120-158 139-177 (343)
78 PF07743 HSCB_C: HSCB C-termin 54.2 93 0.002 25.2 8.0 62 98-163 9-74 (78)
79 PF10186 Atg14: UV radiation r 53.3 73 0.0016 31.8 8.8 42 116-157 54-95 (302)
80 PF06005 DUF904: Protein of un 50.0 91 0.002 25.8 7.2 31 127-157 41-71 (72)
81 PF08537 NBP1: Fungal Nap bind 49.7 45 0.00098 35.1 6.6 50 119-168 176-225 (323)
82 PF10392 COG5: Golgi transport 49.7 86 0.0019 28.4 7.8 26 69-94 26-51 (132)
83 PF05278 PEARLI-4: Arabidopsis 49.6 77 0.0017 32.7 8.1 40 120-159 202-241 (269)
84 PRK11637 AmiB activator; Provi 49.4 69 0.0015 34.6 8.3 28 122-149 93-120 (428)
85 TIGR02209 ftsL_broad cell divi 49.1 53 0.0011 27.0 5.9 50 118-168 24-73 (85)
86 PRK14156 heat shock protein Gr 45.6 85 0.0018 30.4 7.4 53 103-156 20-72 (177)
87 PF11559 ADIP: Afadin- and alp 45.4 1.2E+02 0.0025 27.9 8.1 58 99-156 82-139 (151)
88 COG1938 Archaeal enzymes of AT 45.1 44 0.00096 33.9 5.6 59 82-150 178-236 (244)
89 PRK01773 hscB co-chaperone Hsc 43.8 1.2E+02 0.0027 29.0 8.2 88 72-163 53-161 (173)
90 PF05377 FlaC_arch: Flagella a 43.1 62 0.0013 25.6 4.9 46 108-164 4-49 (55)
91 PF13094 CENP-Q: CENP-Q, a CEN 42.3 1.4E+02 0.003 27.8 8.2 47 114-160 37-83 (160)
92 PRK06342 transcription elongat 41.9 43 0.00093 31.8 4.7 43 120-162 36-80 (160)
93 PF03195 DUF260: Protein of un 41.9 28 0.00061 30.6 3.2 47 92-141 53-101 (101)
94 PRK04654 sec-independent trans 41.9 83 0.0018 31.4 6.7 52 99-151 36-87 (214)
95 PF00831 Ribosomal_L29: Riboso 39.0 1E+02 0.0022 24.1 5.7 45 118-162 7-55 (58)
96 PRK00306 50S ribosomal protein 38.9 1.1E+02 0.0023 24.6 5.9 47 117-163 8-58 (66)
97 PF06148 COG2: COG (conserved 38.4 61 0.0013 29.2 5.0 49 112-160 63-111 (133)
98 PF13863 DUF4200: Domain of un 37.8 1.5E+02 0.0033 26.0 7.4 66 98-163 54-119 (126)
99 PRK00461 rpmC 50S ribosomal pr 37.7 1.2E+02 0.0026 26.0 6.4 51 118-168 8-62 (87)
100 PRK09039 hypothetical protein; 37.6 1.3E+02 0.0029 31.8 8.1 42 120-161 146-195 (343)
101 COG1842 PspA Phage shock prote 37.4 1.6E+02 0.0035 29.4 8.2 68 101-168 14-81 (225)
102 COG0497 RecN ATPase involved i 36.8 1.1E+02 0.0023 34.8 7.5 59 98-156 322-380 (557)
103 PF11572 DUF3234: Protein of u 36.6 9.9 0.00022 33.1 -0.4 53 211-267 2-54 (103)
104 PF10498 IFT57: Intra-flagella 36.3 1.4E+02 0.003 32.0 8.0 75 81-157 211-305 (359)
105 PF08317 Spc7: Spc7 kinetochor 36.0 1.2E+02 0.0027 31.6 7.5 19 217-240 293-311 (325)
106 PF10243 MIP-T3: Microtubule-b 35.8 12 0.00026 41.8 0.0 46 113-158 490-535 (539)
107 PF15155 MRFAP1: MORF4 family- 35.4 79 0.0017 28.4 4.9 50 104-163 12-65 (127)
108 PF09740 DUF2043: Uncharacteri 35.2 19 0.00041 32.3 1.1 36 250-288 63-100 (110)
109 PF10080 DUF2318: Predicted me 35.2 2.7E+02 0.0059 24.6 8.3 65 240-320 19-92 (102)
110 TIGR00012 L29 ribosomal protei 33.8 1.5E+02 0.0032 23.0 5.8 27 118-144 5-31 (55)
111 PF07439 DUF1515: Protein of u 33.5 1.4E+02 0.0031 26.8 6.2 28 121-148 4-31 (112)
112 PRK13723 conjugal transfer pil 33.4 1.6E+02 0.0035 32.6 8.0 43 124-166 390-439 (451)
113 PF08606 Prp19: Prp19/Pso4-lik 33.1 98 0.0021 25.7 4.8 31 121-152 25-55 (70)
114 PRK10884 SH3 domain-containing 32.1 1.4E+02 0.003 29.5 6.7 56 120-175 127-183 (206)
115 PRK11637 AmiB activator; Provi 31.5 1.9E+02 0.0041 31.2 8.3 60 104-163 68-127 (428)
116 PF07889 DUF1664: Protein of u 31.3 1.2E+02 0.0025 27.9 5.6 41 120-160 84-124 (126)
117 KOG0980 Actin-binding protein 30.8 1.9E+02 0.0042 34.5 8.4 69 69-145 445-522 (980)
118 PF10186 Atg14: UV radiation r 30.3 2.6E+02 0.0056 27.9 8.5 45 98-142 64-108 (302)
119 PF07926 TPR_MLP1_2: TPR/MLP1/ 29.7 2.9E+02 0.0063 24.9 8.0 49 101-149 42-90 (132)
120 PF10458 Val_tRNA-synt_C: Valy 29.6 1.8E+02 0.004 23.1 5.9 27 123-149 2-28 (66)
121 TIGR00219 mreC rod shape-deter 28.8 1.4E+02 0.003 30.8 6.4 40 104-143 52-91 (283)
122 PRK05014 hscB co-chaperone Hsc 28.3 2.7E+02 0.0059 26.5 7.8 90 70-163 50-160 (171)
123 smart00549 TAFH TAF homology. 28.0 97 0.0021 27.0 4.2 40 98-138 41-80 (92)
124 PF12718 Tropomyosin_1: Tropom 27.8 2.5E+02 0.0054 26.1 7.2 39 120-158 44-84 (143)
125 PF06698 DUF1192: Protein of u 26.9 1.6E+02 0.0034 23.6 4.9 26 117-142 20-45 (59)
126 PF04698 Rab_eff_C: Rab effect 26.6 87 0.0019 36.4 4.7 49 110-159 573-621 (714)
127 COG1422 Predicted membrane pro 25.7 1E+02 0.0023 30.4 4.5 46 108-159 62-107 (201)
128 smart00787 Spc7 Spc7 kinetocho 25.5 2.5E+02 0.0054 29.5 7.6 15 75-89 150-164 (312)
129 KOG2483 Upstream transcription 25.4 1.5E+02 0.0033 29.9 5.7 64 75-138 75-139 (232)
130 PF12761 End3: Actin cytoskele 25.2 69 0.0015 31.5 3.2 23 122-144 100-122 (195)
131 PRK10884 SH3 domain-containing 25.2 3.2E+02 0.0069 27.0 7.9 46 116-162 130-175 (206)
132 PF12777 MT: Microtubule-bindi 25.1 1.3E+02 0.0028 31.6 5.5 24 122-145 246-269 (344)
133 PRK01356 hscB co-chaperone Hsc 25.0 2.9E+02 0.0063 26.2 7.3 87 71-164 50-157 (166)
134 PF15186 TEX13: Testis-express 24.9 3.3E+02 0.0071 25.8 7.3 64 101-168 81-149 (152)
135 PF13815 Dzip-like_N: Iguana/D 24.9 84 0.0018 28.0 3.5 39 119-157 74-112 (118)
136 COG1645 Uncharacterized Zn-fin 24.8 45 0.00097 30.8 1.7 30 254-286 26-55 (131)
137 PF11471 Sugarporin_N: Maltopo 24.3 1.5E+02 0.0032 23.7 4.4 32 120-151 27-58 (60)
138 TIGR02977 phageshock_pspA phag 24.1 3.9E+02 0.0084 26.2 8.3 59 101-160 14-73 (219)
139 PF07531 TAFH: NHR1 homology t 24.0 1.1E+02 0.0024 26.9 3.9 41 98-139 42-82 (96)
140 TIGR02894 DNA_bind_RsfA transc 23.8 3E+02 0.0065 26.4 7.0 54 105-158 84-137 (161)
141 PF12718 Tropomyosin_1: Tropom 23.8 2.4E+02 0.0052 26.1 6.4 44 120-163 37-80 (143)
142 PRK14147 heat shock protein Gr 23.5 2.3E+02 0.0049 27.2 6.3 38 120-157 27-64 (172)
143 PRK09915 putative outer membra 23.4 1.4E+02 0.003 32.5 5.5 43 107-149 184-226 (488)
144 smart00787 Spc7 Spc7 kinetocho 23.2 2.3E+02 0.005 29.7 6.8 21 119-139 240-260 (312)
145 COG5570 Uncharacterized small 22.6 1.2E+02 0.0025 24.0 3.3 42 101-142 16-57 (57)
146 COG3027 zapA Cell division pro 22.4 1.6E+02 0.0036 26.0 4.7 32 126-157 62-97 (105)
147 KOG2010 Double stranded RNA bi 21.9 2.3E+02 0.0049 30.3 6.2 39 120-158 149-204 (405)
148 PRK05689 fliJ flagellar biosyn 21.9 5.8E+02 0.012 23.0 8.5 23 127-149 73-95 (147)
149 PF12325 TMF_TATA_bd: TATA ele 21.8 4.5E+02 0.0098 23.8 7.5 44 120-163 70-113 (120)
150 PF05529 Bap31: B-cell recepto 21.7 71 0.0015 30.6 2.5 20 121-140 157-176 (192)
151 COG1392 Phosphate transport re 21.7 4.3E+02 0.0094 26.3 8.1 62 93-154 79-145 (217)
152 CHL00154 rpl29 ribosomal prote 21.5 3.8E+02 0.0083 21.8 6.3 26 118-143 12-37 (67)
153 COG3879 Uncharacterized protei 21.4 1.9E+02 0.0042 29.5 5.6 29 122-150 54-82 (247)
154 PRK14154 heat shock protein Gr 21.3 2.2E+02 0.0047 28.4 5.8 31 122-152 63-93 (208)
155 PF14257 DUF4349: Domain of un 20.8 2.6E+02 0.0057 28.0 6.5 14 108-121 149-162 (262)
156 KOG0994 Extracellular matrix g 20.8 3.2E+02 0.007 33.9 7.8 61 99-159 1561-1625(1758)
157 PF02050 FliJ: Flagellar FliJ 20.8 4.5E+02 0.0097 21.8 7.1 44 121-164 55-98 (123)
158 PF11464 Rbsn: Rabenosyn Rab b 20.8 95 0.0021 23.3 2.4 23 114-136 18-40 (42)
159 COG3566 Uncharacterized protei 20.7 1.6E+02 0.0035 31.3 4.9 37 114-150 233-269 (379)
160 PRK10869 recombination and rep 20.6 2.4E+02 0.0053 31.8 6.8 47 108-154 324-370 (553)
161 COG1842 PspA Phage shock prote 20.5 2.3E+02 0.005 28.4 5.9 86 74-163 29-137 (225)
162 PF15290 Syntaphilin: Golgi-lo 20.3 5E+02 0.011 27.2 8.2 67 65-149 53-125 (305)
163 PF07889 DUF1664: Protein of u 20.3 3.7E+02 0.008 24.7 6.7 48 119-166 44-91 (126)
164 PF06273 eIF-4B: Plant specifi 20.2 3.1E+02 0.0068 30.7 7.2 30 107-139 358-387 (492)
165 TIGR02497 yscI_hrpB_dom type I 20.1 2.6E+02 0.0056 20.6 4.5 34 125-158 2-38 (39)
No 1
>PLN02281 chlorophyllide a oxygenase
Probab=100.00 E-value=5.8e-116 Score=934.71 Aligned_cols=380 Identities=74% Similarity=1.245 Sum_probs=355.3
Q ss_pred Cc-chhcccccccccccc--cccccccccccccceEEEEEecCCCccccccCceeeeeeecCCCCCCCCcCCceeehhhH
Q 010738 1 MT-AIATAAALSLPISLY--RPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDPRSKVPQCKGKFLDVNQA 77 (502)
Q Consensus 1 ~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (502)
|| +++|+|+||||+||+ ++++|++||||+|||+||||||||+|+++|||.|++||||||||+++|++||||||||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (536)
T PLN02281 1 MNAAVFSPSALSLPISFSKTRSSFLSRKKGVKGEFRVFAVFGDESGLVEKKSQWRPLFDVEDPRSKAPPYKGKFLDVNQA 80 (536)
T ss_pred CCccccchhhhccChhhhcccccccccccccCCceEEEEEEcccccccccccCceEeeeccCCCccCcccccccccHHHH
Confidence 67 499999999999999 889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccceeccccchhhHHHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHH
Q 010738 78 LEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (502)
Q Consensus 78 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~ 157 (502)
|||+||||||||||||||+||||.||+||||||||||||||||||||||||||||||+|||+|||+||||||++|+||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (536)
T PLN02281 81 IEVARFDIQYLDWRARQDLLTIMILHDKVVDVLNPLAREYKSIGTVKKELAGLQEELSKAHQQVHISEARVSTALDKLAH 160 (536)
T ss_pred HHHHHhhhhcccchhhhhHHHHHHHhHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhccccccccccccCCCCCChhhhHhhhccCCCCcccccCCCCCcccccccceEEeeecCCCCCCCceeEee
Q 010738 158 MEALVNDRLLQDRHTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDC 237 (502)
Q Consensus 158 me~l~~~~~l~~~~~a~~~~~~~~~~ts~~~~~~e~~~i~~~~l~~~gp~~p~~~~l~~~W~~V~~~seL~~g~~~~~~l 237 (502)
||+|+|++||+|++.+.++..++.+.+++...+.+.++..+++++.+||++||...+++.||+||.++||++|+++.+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~lrn~Wy~Va~s~EL~~g~~~~v~l 240 (536)
T PLN02281 161 MEELVNDRLLPGRVVTELDKPSSSTTASAVELDREKTNTGAKSLNVSGPVPPYSPHLKNFWYPVAFTADLKHDTMVPIEC 240 (536)
T ss_pred HHHHhhhhccCCCccccccccccCCcCcchhhhhhhcccccccccccCCCCCcchhhhcccEEEEEHHHCCCCCeEEEEE
Confidence 99999999999998888876666666666888999999999999999999999999999999999999999899999999
Q ss_pred CCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcCCCCcccCCCcccccccccccceEEeeceEE
Q 010738 238 FEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIW 317 (502)
Q Consensus 238 ~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~FdldG~cv~vP~~~~~~~~L~~~pV~e~~G~Iw 317 (502)
+|++|+|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|+|+.+|..+....++++|||++++|+||
T Consensus 241 lG~~IVL~R~~dG~v~A~~D~CPHRgaPLs~G~v~g~~L~CPYHGW~FD~dG~cv~iP~~~~~~~~l~sYPV~e~~GlVw 320 (536)
T PLN02281 241 FEQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCPYHGWEYSTDGECKKMPSTKLLKVKIKSLPCLEQEGMIW 320 (536)
T ss_pred CCEEEEEEECCCCeEEEEeCcCcCCCCccccceeeCCEEEeCCCCCEECCCCCEeeCCCCccccCCcceEeEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999999999999998765567899999999999999
Q ss_pred EecCCCCCCCCCCCCCCCCCceEeEEEEEEEecccchhccccCCCCCCCcCCcccccCCCCCc
Q 010738 318 IWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVP 380 (502)
Q Consensus 318 V~lg~~~p~~~lpe~~~~~~~~v~~~~~~~v~~Nwk~~vEN~lD~yH~~~vH~~tfg~~~~~p 380 (502)
||++++++.+.+|.+..+.++.......+++++||++++||++|.||++|+|+++++..+..+
T Consensus 321 V~lgd~~~aP~~p~ld~p~~~~~~~~~~~~~~~nwkllvENllD~~H~~fvH~~t~g~~~~~p 383 (536)
T PLN02281 321 IWPGDEPPAPILPSLQPPSGFLIHAELVMDLPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVP 383 (536)
T ss_pred EEeCCCCCCCCCccccCcccceEEEEEEEEecCCHHHHHHhccccccccccCcccccCcccCC
Confidence 999876554456666555466555555789999999999999999999999999999865544
No 2
>TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=100.00 E-value=2.2e-37 Score=328.71 Aligned_cols=180 Identities=19% Similarity=0.311 Sum_probs=155.1
Q ss_pred ccCCCCCChhhhHhhhccCCCCcccccCCCCCcccccccceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEEEe
Q 010738 178 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQ 256 (502)
Q Consensus 178 ~~~~~~ts~~~~~~e~~~i~~~~l~~~gp~~p~~~~l~~~W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A~~ 256 (502)
.....|||+++|+.|+++||. +.|++||+++|||+ |+++++++++++|||+|++||+++||.
T Consensus 16 v~~~~ytd~~if~~E~~~IF~-----------------~~W~~v~h~selp~~GDy~t~~ig~~pviv~R~~dG~i~a~~ 78 (438)
T TIGR03228 16 IARDMFTEPELFDLEMELIFE-----------------KNWIYACHESELPNNHDFVTVRAGRQPMIVTRDGKGELHALV 78 (438)
T ss_pred cChheECCHHHHHHHHHHHHh-----------------hCCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCCEEEEc
Confidence 446689999999999999996 69999999999997 899999999999999999999999999
Q ss_pred ecCCCCCCCCCC-CCccceeeeeeecceEEcCCCCcccCCCcc-------cccccccccceEEeeceEEEecCCCCCCCC
Q 010738 257 NTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ-------LRNVKIKSLPCFEQEGMIWIWPGDEPPTAT 328 (502)
Q Consensus 257 N~CpHRGa~Ls~-G~v~~~~IvCPYHGW~FdldG~cv~vP~~~-------~~~~~L~~~pV~e~~G~IwV~lg~~~p~~~ 328 (502)
|+|||||++|+. +.++.+.|+||||||+||+||+|+++|... ....+|++++|.+++|+||++++++++ .+
T Consensus 79 N~C~HRGa~L~~~~~Gn~~~~~CPYHgW~y~~dG~L~~vp~~~~y~~~fd~~~~~L~~~rv~~y~GfIFv~l~~~a~-~~ 157 (438)
T TIGR03228 79 NACQHRGATLTRVGKGNQSTFTCPFHAWCYKSDGRLVKVKAPGEYCEGFDKATRGLKKARIASYRGFVFVSLDVAAT-DS 157 (438)
T ss_pred ccCCCCCCccccCCccccCEEEcCCCCCcccCCCceeecCcccccCCCCChhhCCCcceeEEEECCEEEEEeCCCCC-CC
Confidence 999999999996 788888999999999999999999998642 124778999999999999999987642 25
Q ss_pred CCCCCCC-------------C-CceEe-EEEEEEEecccchhccccCCCCCCCcCCcccccC
Q 010738 329 IPCLLPP-------------S-GFEIH-AEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAK 375 (502)
Q Consensus 329 lpe~~~~-------------~-~~~v~-~~~~~~v~~Nwk~~vEN~lD~yH~~~vH~~tfg~ 375 (502)
+++++++ . ++++. +..++.++||||+++||++|.||++++|.++++.
T Consensus 158 l~e~lg~~~~~ld~~~~~~~~g~le~~~~~~~~~~~~NWKl~~EN~~D~YH~~~vH~~~~~~ 219 (438)
T TIGR03228 158 LEDFLGDARVFLDMMVAQSPTGELEVLPGKSAYTYAGNWKLQNENGLDGYHVSTVHYNYVAT 219 (438)
T ss_pred HHHHhhhHHHHHHHHhhccCcCceEEecceEEEEeCCchHHHHHhccccccchhhChhhHhh
Confidence 6665532 1 24433 3457899999999999999999999999987754
No 3
>COG4638 HcaE Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]
Probab=100.00 E-value=2.8e-36 Score=312.96 Aligned_cols=184 Identities=29% Similarity=0.553 Sum_probs=154.7
Q ss_pred ccCCCCCChhhhHhhhccCCCCcccccCCCCCcccccccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEee
Q 010738 178 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQN 257 (502)
Q Consensus 178 ~~~~~~ts~~~~~~e~~~i~~~~l~~~gp~~p~~~~l~~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N 257 (502)
.....++|++.+..+++.+|. +.||+||+++||++++++++.++|++++|+|+.||+++|+.|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~-----------------~~Wy~v~~~~el~~~~~~~~~i~g~~lvi~R~~dg~~~al~d 67 (367)
T COG4638 5 LPPPFYTDPELFQLELERIFY-----------------KHWYVVAHSSELPKPDPLTVRIGGEPLVVVRDKDGQVHALAD 67 (367)
T ss_pred CCCccccCHHHHHHHHHHhhh-----------------hCEEEEccHHHCCCCCceeEEEcCeEEEEEECCCCCEEEEec
Confidence 344578999999999999996 599999999999998999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCccc-eeeeeeecceEEcCCCCcccCCC--ccc----ccccccccceEEeeceEEEecCCCCCC-C--
Q 010738 258 TCAHRACPLHLGSVNE-GRIQCPYHGWEYSTDGKCEKMPS--TQL----RNVKIKSLPCFEQEGMIWIWPGDEPPT-A-- 327 (502)
Q Consensus 258 ~CpHRGa~Ls~G~v~~-~~IvCPYHGW~FdldG~cv~vP~--~~~----~~~~L~~~pV~e~~G~IwV~lg~~~p~-~-- 327 (502)
.|||||++|+.|.+.+ +.|+||||||+||.+|+|+.+|. ... ....+++||+.+++|+||||++++++. .
T Consensus 68 ~C~HRga~Ls~g~~~~~~~l~CpyHgW~y~~~G~~~~ip~~~~~~~~~~~~~~l~~~~~~~~~G~Iwi~~~~~~~~~~~~ 147 (367)
T COG4638 68 VCPHRGARLSEGRVGGKGRLTCPYHGWTYDLDGRLRGVPARGYPLDFDKSEHGLKRYPVEERYGFIWIWLGDPPPAAEAF 147 (367)
T ss_pred cCCCCCchhccccCCCCceEecCCCceEECCCCcEecCCccccCCCCCHhhCCccccceEEEccEEEEecCCCccChhHh
Confidence 9999999999999888 89999999999999999999994 221 236799999999999999999987642 1
Q ss_pred CCCCCC-CCCCceEe-EEEEEEEecccchhccccCC-CCCCCcCCcccccCCCC
Q 010738 328 TIPCLL-PPSGFEIH-AEIVMELPIEHGLLLDNLLD-LAHAPFTHTSTFAKGWS 378 (502)
Q Consensus 328 ~lpe~~-~~~~~~v~-~~~~~~v~~Nwk~~vEN~lD-~yH~~~vH~~tfg~~~~ 378 (502)
..|..+ ..+++... ......+++|||.++||++| +||++++|+++.+....
T Consensus 148 ~~p~~~~~~~~~~~~~~~~~~~~~~nwk~~vEn~~d~~~H~~~vH~~~~~~~~~ 201 (367)
T COG4638 148 LPPAEPYEDDRSRLGGGSFTINVPGNWKLAVENNLDDPYHVPFVHPGLLGTEPH 201 (367)
T ss_pred cccccccccccccccCceEEEEecccceEEeeccCCccccccccCHHHhccccc
Confidence 122222 22222222 34567889999999998887 99999999988877544
No 4
>TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family all act on benzoate, but may have additional activities on various benozate analogs. This model describes the large subunit. Between the trusted and noise cutoffs are similar enzymes, likely to act on benzoate but perhaps best identified according to some other activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).
Probab=100.00 E-value=8e-36 Score=316.72 Aligned_cols=179 Identities=20% Similarity=0.260 Sum_probs=151.6
Q ss_pred ccCCCCCChhhhHhhhccCCCCcccccCCCCCcccccccceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEEEe
Q 010738 178 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQ 256 (502)
Q Consensus 178 ~~~~~~ts~~~~~~e~~~i~~~~l~~~gp~~p~~~~l~~~W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A~~ 256 (502)
.....|||+++|+.|+++||. +.|++||+++||++ |+++++.+++++|+|+|++||+++||.
T Consensus 16 ~~~~~Ytd~~~f~~E~~~IF~-----------------~~W~~v~~~selp~~gd~~t~~~~~~~vvv~R~~dG~i~af~ 78 (433)
T TIGR03229 16 CKREMFTDPELFDLEMKHIFE-----------------GNWIYLAHESQIPNNNDYYTTYMGRQPIFIARNKDGELNAFI 78 (433)
T ss_pred CChhhcCCHHHHHHHHHHHhh-----------------hCCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCcEEEEe
Confidence 456689999999999999996 68999999999997 699999999999999999999999999
Q ss_pred ecCCCCCCCCCCCC-ccceeeeeeecceEEcCCCCcccCCCccc----------ccccccccc-eEEeeceEEEecCCCC
Q 010738 257 NTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQL----------RNVKIKSLP-CFEQEGMIWIWPGDEP 324 (502)
Q Consensus 257 N~CpHRGa~Ls~G~-v~~~~IvCPYHGW~FdldG~cv~vP~~~~----------~~~~L~~~p-V~e~~G~IwV~lg~~~ 324 (502)
|+|||||++|+.|. ++.+.|+||||||+||.||+|+++|.... ...+|++++ +..+.|+||+++++++
T Consensus 79 N~C~HRga~L~~~~~g~~~~~~CPyHgW~f~~~G~l~~vP~~~~~~~~~~fd~~~~~~L~~v~rve~y~GfIFv~l~~~~ 158 (433)
T TIGR03229 79 NACSHRGAMLCRHKRGNKTTYTCPFHGWTFNNSGKLLKVKDPEDAGYPECFNKDGSHDLKKVARFESYRGFLFGSLNPDV 158 (433)
T ss_pred CcCCCCCCCcccccccCCCEEEcCCCCCEecCCcceEeCCCcccccCccccCcHhhcCCccceEEEEECCEEEEEcCCCC
Confidence 99999999999874 56679999999999999999999987321 136799996 5556899999999875
Q ss_pred CCCCCCCCCCC-------------CCceEe-EEEEEEEecccchhccccCCCCCCCcCCcccccC
Q 010738 325 PTATIPCLLPP-------------SGFEIH-AEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAK 375 (502)
Q Consensus 325 p~~~lpe~~~~-------------~~~~v~-~~~~~~v~~Nwk~~vEN~lD~yH~~~vH~~tfg~ 375 (502)
+ +|++++++ .++.+. +..+++++||||+++||++|.||++++|++++..
T Consensus 159 ~--~l~e~Lg~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~NWKl~~EN~~D~YH~~~vH~~~~~~ 221 (433)
T TIGR03229 159 L--PLEEHLGETAKIIDMIVDQSPDGLEVLRGSSTYTYEGNWKLQAENGADGYHVSAVHWNYAAT 221 (433)
T ss_pred C--CHHHHhhhHHHHHHHHhhcCcCCCeEEeeeEEEEecCchhhhHHhccCcccchhhcccHHHh
Confidence 4 56665542 233332 3457889999999999999999999999877654
No 5
>PLN02518 pheophorbide a oxygenase
Probab=100.00 E-value=4.1e-34 Score=310.00 Aligned_cols=166 Identities=24% Similarity=0.577 Sum_probs=138.8
Q ss_pred ccccccceEEeeecCCCCCCCceeEeeCCeeEEEEEc-CCCceEEEeecCCCCCCCCCCCCcc-ceeeeeeecceEEcCC
Q 010738 211 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRG-KDGIPGCVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTD 288 (502)
Q Consensus 211 ~~~l~~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~-~dG~v~A~~N~CpHRGa~Ls~G~v~-~~~IvCPYHGW~Fdld 288 (502)
.-.+++.||+||.++||++|+++.++++|++|||||+ .+|+++|++|+|||||++|+.|.++ ++.|+||||||+||.+
T Consensus 84 ~f~~~~~Wy~Va~~~dL~~g~p~~~~llG~~lVl~Rd~~~G~~~A~~d~CPHRgapLS~G~v~~~g~L~CpYHGW~Fd~~ 163 (539)
T PLN02518 84 KFSWRDHWYPVSLVEDLDPSVPTPFQLLGRDLVLWKDPNQGEWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGC 163 (539)
T ss_pred hhhhhhhCEEEEEHHHCCCCCeEEEEECCEEEEEEEECCCCeEEEEcccCcCcCCCcccceecCCCEEEcCCCCCEEcCC
Confidence 4578999999999999988899999999999999998 8999999999999999999999985 6799999999999999
Q ss_pred CCcccCCCccc----------ccccccccceEEeeceEEEecCCCC----CCCCCCCCC---CCCCceEeEEEEEEEecc
Q 010738 289 GKCEKMPSTQL----------RNVKIKSLPCFEQEGMIWIWPGDEP----PTATIPCLL---PPSGFEIHAEIVMELPIE 351 (502)
Q Consensus 289 G~cv~vP~~~~----------~~~~L~~~pV~e~~G~IwV~lg~~~----p~~~lpe~~---~~~~~~v~~~~~~~v~~N 351 (502)
|+|+.+|.... ...++++|||++++|+||||+++++ +...+|.++ +..++... ....+++++
T Consensus 164 G~c~~IP~~~~~~~~~~~~~~~~a~v~sypv~e~~GlIwV~~~~~~~~~a~~~~~P~~~~~~~~~~~~~~-~~~~~~~~~ 242 (539)
T PLN02518 164 GSCTRIPQAAPEGPEARAVKSPRACAIKFPTMVSQGLLFVWPDENGWERAQATKPPMLPDEFDDPEFSTV-TIQRDLFYG 242 (539)
T ss_pred CCeeecccccccccccccccCcccccceEeEEEECCEEEEEeCCccccccccccCCCCcccccCCCceeE-EEEEEEecC
Confidence 99999996421 1346899999999999999998652 122344332 22344332 234688999
Q ss_pred cchhccccCCCCCCCcCCcccccCCC
Q 010738 352 HGLLLDNLLDLAHAPFTHTSTFAKGW 377 (502)
Q Consensus 352 wk~~vEN~lD~yH~~~vH~~tfg~~~ 377 (502)
|++++||++|.+|++|+|++++|...
T Consensus 243 ~~~l~EN~lD~sH~pfvH~~~~G~~~ 268 (539)
T PLN02518 243 YDTLMENVSDPSHIDFAHHKVTGRRD 268 (539)
T ss_pred chhHHHhCCccchhceeccccccCcc
Confidence 99999999999999999999998743
No 6
>PLN00095 chlorophyllide a oxygenase; Provisional
Probab=100.00 E-value=1.3e-33 Score=291.80 Aligned_cols=163 Identities=42% Similarity=0.956 Sum_probs=142.3
Q ss_pred cccccceEEeeecCCC-CCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcCCCC
Q 010738 212 TRLKNFWFPVAFSTDL-KDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK 290 (502)
Q Consensus 212 ~~l~~~W~~V~~~seL-~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~FdldG~ 290 (502)
...++.||+||+++|| ++|+++.++++|++|+|+|+.+|+++|+.|.|||||++|+.|.++++.|+||||||+||.+|+
T Consensus 67 ~~~r~~WypVa~ssdL~~~g~~~~f~L~GepIVL~Rd~dGqv~Af~N~CPHRGapLSeG~v~~g~L~CPYHGW~FD~~G~ 146 (394)
T PLN00095 67 ADARAHWFPVAFAAGLRDEDALIAFDLFNVPWVLFRDADGEAGCIKDECAHRACPLSLGKLVDGKAQCPYHGWEYETGGE 146 (394)
T ss_pred CchhcCeEEEEEHHHCCCCCceEEEEECCEEEEEEECCCCCEEEEeccCCCCCCccccCcccCCEEEecCCCcEECCCCC
Confidence 4457999999999999 568999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccc--ccccccccceEEeeceEEEecCCCCCC------------------CCCCC-CCCCCCceEeEEEEEEEe
Q 010738 291 CEKMPSTQL--RNVKIKSLPCFEQEGMIWIWPGDEPPT------------------ATIPC-LLPPSGFEIHAEIVMELP 349 (502)
Q Consensus 291 cv~vP~~~~--~~~~L~~~pV~e~~G~IwV~lg~~~p~------------------~~lpe-~~~~~~~~v~~~~~~~v~ 349 (502)
|+.+|..+. .+..+++|||++++|+||||+|+..+. ..+|. +.++++|..+.....+++
T Consensus 147 C~~iP~~~~~~~~~~v~tYPV~e~dGlVwVw~G~~~p~dflg~~~~~e~~~~~~~~~~~P~~~~~~~gf~~~aev~~Dlp 226 (394)
T PLN00095 147 CAKMPSCKKFLKGVFADAAPVIERDGFIFLWAGESDPADFVGPEAACESIDDDVLAANEPGMFAPGEGFTPMAEVIADIK 226 (394)
T ss_pred EeeCCCccccccccccceEEEEEECCEEEEEeCCcchhhhccccccccccccchhhccCCcccCCCCCceEEEEEEEecc
Confidence 999997532 235688999999999999999875443 12343 444568887777668999
Q ss_pred cccchhccccCCCCC-CCcCCccccc
Q 010738 350 IEHGLLLDNLLDLAH-APFTHTSTFA 374 (502)
Q Consensus 350 ~Nwk~~vEN~lD~yH-~~~vH~~tfg 374 (502)
+.|.+++||.+|.+| .+|+|+.||.
T Consensus 227 ~d~~~L~ENllD~aH~a~~~~t~tf~ 252 (394)
T PLN00095 227 LDADEVLERLLAIGERARREATVSFD 252 (394)
T ss_pred ccHHHHHHhhcCccccCCccCceeee
Confidence 999999999999999 6999999996
No 7
>cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PhDO and CBDO are two-component RO systems, containing oxygenase and reductase components. PhDO catalyzes the dihydroxylation of phthalate to form th
Probab=99.97 E-value=6e-32 Score=247.96 Aligned_cols=132 Identities=33% Similarity=0.714 Sum_probs=119.3
Q ss_pred ccccCCCCCcccccccceEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeee
Q 010738 201 LNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCP 279 (502)
Q Consensus 201 l~~~gp~~p~~~~l~~~W~~V~~~seL~-~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCP 279 (502)
++++||++|++.++++.|++|+.+++|+ +|+++.+.++|.+++|+|+.+|+++|+.|+|||||++|+.|.+.++.|+||
T Consensus 5 ~~~~~~~~~~~~~~~~~W~~v~~~~eL~~~g~~~~~~~~g~~i~v~r~~~G~v~A~~n~CpHrG~~L~~G~~~~~~i~CP 84 (144)
T cd03479 5 LTRVGPGTPMGELLRRYWQPVALSSELTEDGQPVRVRLLGEDLVAFRDTSGRVGLLDEHCPHRGASLVFGRVEECGLRCC 84 (144)
T ss_pred eeecCCCCchhhHhhCceEEEEEHHHCCCCCCEEEEEECCcEEEEEEeCCCCEEEEcCcCCCCCCcccCCcccCCEEEcc
Confidence 5789999999999999999999999999 589999999999999999989999999999999999999999888999999
Q ss_pred ecceEEcCCCCcccCCCccc-----ccccccccceEEeeceEEEecCCCCCCCCCCCC
Q 010738 280 YHGWEYSTDGKCEKMPSTQL-----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCL 332 (502)
Q Consensus 280 YHGW~FdldG~cv~vP~~~~-----~~~~L~~~pV~e~~G~IwV~lg~~~p~~~lpe~ 332 (502)
||||+||.+|+|+.+|..+. ...+|++|+|++++|+|||++++..+.+++|++
T Consensus 85 ~Hgw~F~~~G~~~~~P~~~~~~~~~~~~~l~~~~v~~~~G~I~V~~~~~~~~p~~~~~ 142 (144)
T cd03479 85 YHGWKFDVDGQCLEMPSEPPDSQLKQKVRQPAYPVRERGGLVWAYMGPAEEAPEFPRY 142 (144)
T ss_pred CCCcEECCCCCEEECCCCccccCCccccCcceEeEEEECCEEEEECCCCCCCCCCCCC
Confidence 99999999999999997542 245799999999999999999875444455554
No 8
>cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b. CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner
Probab=99.97 E-value=1.1e-30 Score=235.65 Aligned_cols=122 Identities=65% Similarity=1.383 Sum_probs=113.9
Q ss_pred cCCCCCcccccccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecce
Q 010738 204 SGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGW 283 (502)
Q Consensus 204 ~gp~~p~~~~l~~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW 283 (502)
-|+++++..++++.|++|++++||++|+++.++++|++++|+|+.||+++|+.|.|||||++|+.|.++++.|+||||||
T Consensus 4 ~~~~~~~~~~~~~~W~~v~~~~el~~g~~~~~~v~g~~l~l~r~~~g~v~A~~n~CpH~g~~L~~G~~~~~~i~CP~Hgw 83 (129)
T cd04337 4 LGSSLELEPGLRNFWYPVEFSKDLKMDTMVPFELFGQPWVLFRDEDGTPGCIRDECAHRACPLSLGKVIEGRIQCPYHGW 83 (129)
T ss_pred cccCccccchhhCccEEEEEHHHCCCCCeEEEEECCcEEEEEECCCCcEEEEeCcCCCCcCCcccCcEeCCEEEeCCCCC
Confidence 47889999999999999999999999999999999999999999899999999999999999999999899999999999
Q ss_pred EEcCCCCcccCCCcccccccccccceEEeeceEEEecCCCCC
Q 010738 284 EYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 325 (502)
Q Consensus 284 ~FdldG~cv~vP~~~~~~~~L~~~pV~e~~G~IwV~lg~~~p 325 (502)
+||.+|+|+.+|..+....+|++|++++++|+|||+++++.|
T Consensus 84 ~Fd~tG~~~~~P~~~~~~~~l~~y~v~v~~g~V~V~~~~~~p 125 (129)
T cd04337 84 EYDGDGECTKMPSTKCLNVGIAALPCMEQDGMIWVWPGDDPP 125 (129)
T ss_pred EECCCCCEEeCCcCCCccCCcceEeEEEECCEEEEEcCCCCC
Confidence 999999999999765444689999999999999999987644
No 9
>cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobe
Probab=99.96 E-value=1.7e-29 Score=233.54 Aligned_cols=131 Identities=21% Similarity=0.370 Sum_probs=116.7
Q ss_pred cCCCCCChhhhHhhhccCCCCcccccCCCCCcccccccceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEEEee
Q 010738 179 CASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQN 257 (502)
Q Consensus 179 ~~~~~ts~~~~~~e~~~i~~~~l~~~gp~~p~~~~l~~~W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A~~N 257 (502)
+++.|+|++.|+.|++++|++ +.|++||++++|++ |+++++.++|++|+|+|+.+|+++|+.|
T Consensus 3 ~~~~y~d~~~~~~E~~~if~~----------------~~W~~v~~~~el~~~g~~~~~~i~g~~iiv~r~~~g~v~A~~n 66 (150)
T cd03545 3 PYKVFTDRAYFDREQERIFRG----------------KTWSYVGLEAEIPNAGDFKSTFVGDTPVVVTRAEDGSLHAWVN 66 (150)
T ss_pred ChhhccCHHHHHHHHHhhhCC----------------CceEEEEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEcc
Confidence 456899999999999999951 68999999999995 8999999999999999988999999999
Q ss_pred cCCCCCCCCCCCC-ccceeeeeeecceEEcCCCCcccCCCcc-------------cccccccccceEEeeceEEEecCCC
Q 010738 258 TCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQ-------------LRNVKIKSLPCFEQEGMIWIWPGDE 323 (502)
Q Consensus 258 ~CpHRGa~Ls~G~-v~~~~IvCPYHGW~FdldG~cv~vP~~~-------------~~~~~L~~~pV~e~~G~IwV~lg~~ 323 (502)
+|||||++|+.|. ++++.|+||||||+||++|+|+++|..+ ....+|++|+|.+++|+|||+++++
T Consensus 67 ~CpHrg~~L~~g~~g~~~~i~CP~Hgw~Fdl~G~~~~ip~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~ifv~l~~~ 146 (150)
T cd03545 67 RCAHRGALVCRERRGNDGSLTCVYHQWAYDLKGNLKGVPFRRGLKGQGGMPKDFDMKQHGLEKLRVETVGGLVFASFSDE 146 (150)
T ss_pred cCcCCCCEecccccCCCCEEECCCCCCEECCCCCEEECccccccccccccccCcCHHHCCCcceeEeEECCEEEEEeCCC
Confidence 9999999999874 4577999999999999999999999642 1246899999999999999999876
Q ss_pred CC
Q 010738 324 PP 325 (502)
Q Consensus 324 ~p 325 (502)
++
T Consensus 147 ~~ 148 (150)
T cd03545 147 VE 148 (150)
T ss_pred CC
Confidence 54
No 10
>cd03537 Rieske_RO_Alpha_PrnD This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD). PrnD is a novel Rieske N-oxygenase that catalyzes the final step in the pyrrolnitrin biosynthetic pathway, the oxidation of the amino group in aminopyrrolnitrin to a nitro group, forming the antibiotic pyrrolnitrin. The biosynthesis of pyrrolnitrin is one of the best examples of enzyme-catalyzed arylamine oxidation. Although arylamine oxygenases are widely distributed within the microbial world and used in a variety of metabolic reactions, PrnD represents one of only two known examples of arylamine oxygenases or N-oxygenases involved in arylnitro group formation, the other being AurF involved in aureothin biosynthesis.
Probab=99.96 E-value=4.3e-29 Score=223.88 Aligned_cols=110 Identities=33% Similarity=0.729 Sum_probs=100.1
Q ss_pred cceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcCCCCcccCC
Q 010738 216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295 (502)
Q Consensus 216 ~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~FdldG~cv~vP 295 (502)
+.||+|+.++||+ ++++.++++|++++|+|+.||+++|++|+|||||++|+.|.++++.|+||||||+||.+|+|+.+|
T Consensus 2 ~~W~~v~~~~~l~-~~~~~~~~~g~~ivl~r~~~g~v~a~~n~CpHrg~~Ls~G~v~~~~l~CpyHGw~Fd~~G~~~~iP 80 (123)
T cd03537 2 ASWYVAMRSDDLK-DKPTELTLFGRPCVAWRGATGRAVVMDRHCSHLGANLADGRVKDGCIQCPFHHWRYDEQGQCVHIP 80 (123)
T ss_pred CcEEEEEEHHHcC-CCcEEEEECCeEEEEEEccCCEEEEEcCCCCCCCCCccCCEEeCCEEECCCCCCEECCCCCEEECC
Confidence 5799999999996 578899999999999999899999999999999999999999999999999999999999999999
Q ss_pred Cccc---------ccccccccceEEeeceEEEecCCCCCC
Q 010738 296 STQL---------RNVKIKSLPCFEQEGMIWIWPGDEPPT 326 (502)
Q Consensus 296 ~~~~---------~~~~L~~~pV~e~~G~IwV~lg~~~p~ 326 (502)
..+. ...++++|||+|++|+||||++++.|.
T Consensus 81 ~~~~~~~~~~~~p~~~~~~~~pv~e~~G~Vwv~~g~~~~~ 120 (123)
T cd03537 81 GHSTAVRRLEPVPRGARQPTLVTAERYGYVWVWYGSPQPL 120 (123)
T ss_pred CCcccccccccCCcccccccEeEEEECCEEEEEcCCCCcc
Confidence 7431 236799999999999999999976553
No 11
>cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane. This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis.
Probab=99.96 E-value=5.1e-29 Score=226.10 Aligned_cols=115 Identities=30% Similarity=0.839 Sum_probs=104.9
Q ss_pred ccccccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcCCCC
Q 010738 211 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK 290 (502)
Q Consensus 211 ~~~l~~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~FdldG~ 290 (502)
...|++.|++|+.++||++|..+.++++|++|+|+|+.+|+++|++|+|||||++|+.|.+.++.|+||||||+||.+|+
T Consensus 11 ~~~~~~~W~~v~~~~el~~~~~~~~~v~g~~ivl~r~~~G~v~A~~n~CpHrga~L~~G~~~~~~i~CP~Hgw~Fd~~G~ 90 (134)
T cd04338 11 EYDWREEWYPLYLLKDVPTDAPLGLSVYDEPFVLFRDQNGQLRCLEDRCPHRLAKLSEGQLIDGKLECLYHGWQFGGEGK 90 (134)
T ss_pred ccccccCcEEEEEHHHCCCCCCEEEEECCceEEEEEcCCCCEEEEcCcCCCCcCcccCCeecCCEEEccCCCCEECCCCC
Confidence 45788999999999999998888999999999999998999999999999999999999998999999999999999999
Q ss_pred cccCCCccc-----ccccccccceEEeeceEEEecCCCCC
Q 010738 291 CEKMPSTQL-----RNVKIKSLPCFEQEGMIWIWPGDEPP 325 (502)
Q Consensus 291 cv~vP~~~~-----~~~~L~~~pV~e~~G~IwV~lg~~~p 325 (502)
|+.+|.... ...+|++|+|++++|+|||++++.+|
T Consensus 91 ~~~~P~~~~~~~~~~~~~l~~y~v~~~~G~V~V~~~~~~~ 130 (134)
T cd04338 91 CVKIPQLPADAKIPKNACVKSYEVRDSQGVVWMWMSEATP 130 (134)
T ss_pred EEECCCCCccCCCCcccCcceEeEEEECCEEEEEcCCCCC
Confidence 999987531 23569999999999999999987654
No 12
>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH). The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.
Probab=99.95 E-value=9.1e-28 Score=212.35 Aligned_cols=109 Identities=25% Similarity=0.638 Sum_probs=100.9
Q ss_pred ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcCCCCcccCCC
Q 010738 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPS 296 (502)
Q Consensus 217 ~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~FdldG~cv~vP~ 296 (502)
.|++|+.++||++|+++.++++|++++|+|+.+|+++|++|+|||||++|+.|.+.++.|+||||||+||.+|+|+.+|.
T Consensus 1 gW~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~g~~~a~~n~CpH~ga~L~~G~~~~~~i~CP~Hg~~fd~~G~~~~~p~ 80 (115)
T cd03531 1 GWHCLGLARDFRDGKPHGVEAFGTKLVVFADSDGALNVLDAYCRHMGGDLSQGTVKGDEIACPFHDWRWGGDGRCKAIPY 80 (115)
T ss_pred CcEEEEEHHHCCCCCeEEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCccCcccCCEEECCCCCCEECCCCCEEECCc
Confidence 49999999999999999999999999999998999999999999999999999999999999999999999999999997
Q ss_pred ccc--ccccccccceEEeeceEEEecCCCCC
Q 010738 297 TQL--RNVKIKSLPCFEQEGMIWIWPGDEPP 325 (502)
Q Consensus 297 ~~~--~~~~L~~~pV~e~~G~IwV~lg~~~p 325 (502)
... ...++++||+++++|+|||+++++..
T Consensus 81 ~~~~p~~~~l~~ypv~~~~g~v~v~~~~~~~ 111 (115)
T cd03531 81 ARRVPPLARTRAWPTLERNGQLFVWHDPEGN 111 (115)
T ss_pred ccCCCcccccceEeEEEECCEEEEECCCCCC
Confidence 542 23678999999999999999987653
No 13
>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine.
Probab=99.95 E-value=9.1e-28 Score=221.02 Aligned_cols=127 Identities=20% Similarity=0.371 Sum_probs=112.4
Q ss_pred CCCChhhhHhhhccCCCCcccccCCCCCcccccccceEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCceEEEeecCC
Q 010738 182 PSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCA 260 (502)
Q Consensus 182 ~~ts~~~~~~e~~~i~~~~l~~~gp~~p~~~~l~~~W~~V~~~seL~-~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~Cp 260 (502)
.|+|+++++.|++++|. +.|++||+.+||+ +|+++++.++|++|+|+|+.+|+++|+.|+||
T Consensus 4 ~y~~~~~~~~e~~~i~~-----------------~~W~~v~~~~elp~~G~~~~~~i~g~~i~v~r~~~g~v~A~~n~Cp 66 (146)
T cd03538 4 VYTDPEIFALEMERLFG-----------------NAWIYVGHESQVPNPGDYITTRIGDQPVVMVRHTDGSVHVLYNRCP 66 (146)
T ss_pred eEcCHHHHHHHHHHHhh-----------------cCCEEEEEHHHCCCCCCEEEEEECCeeEEEEECCCCCEEEEeccCc
Confidence 58999999999999995 7899999999999 48999999999999999998999999999999
Q ss_pred CCCCCCCCC-Ccc-ceeeeeeecceEEcCCCCcccCCCccc----------cccccccc-ceEEeeceEEEecCCCCC
Q 010738 261 HRACPLHLG-SVN-EGRIQCPYHGWEYSTDGKCEKMPSTQL----------RNVKIKSL-PCFEQEGMIWIWPGDEPP 325 (502)
Q Consensus 261 HRGa~Ls~G-~v~-~~~IvCPYHGW~FdldG~cv~vP~~~~----------~~~~L~~~-pV~e~~G~IwV~lg~~~p 325 (502)
|||++|+.+ .++ ++.|+||||||+||.||+|+.+|..+. ...+|+++ .|++++|+|||++++++|
T Consensus 67 Hrg~~L~~~~~g~~~~~i~CP~Hgw~Fd~~G~~~~~p~~~~~~~~~~~~~~~~~~L~~~~~v~~~~g~ifv~~~~~~~ 144 (146)
T cd03538 67 HKGTKIVSDGCGNTGKFFRCPYHAWSFKTDGSLLAIPLKKGYEGTGFDPSHADKGMQRVGAVDIYRGFVFARLSPSGP 144 (146)
T ss_pred CCCCEeecccccccCCEEECCCCCCEECCCCCEEECCchhcCCcccCCcchhhCCCCcceeEEEECCEEEEEcCCCCC
Confidence 999999754 343 567999999999999999999997541 24689999 689999999999987643
No 14
>cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degrad
Probab=99.95 E-value=1.2e-27 Score=211.57 Aligned_cols=109 Identities=36% Similarity=0.826 Sum_probs=101.1
Q ss_pred cccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcCCCCccc
Q 010738 214 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEK 293 (502)
Q Consensus 214 l~~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~FdldG~cv~ 293 (502)
+++.|++||.++||+ ++++.+.+.|.+++|+|+.+|+++|++|.|||||++|+.|.+.++.|+||||||+||.+|+|+.
T Consensus 2 ~~~~W~~v~~~~el~-~~~~~~~~~g~~i~l~r~~~g~~~a~~n~CpH~g~~L~~G~~~~~~i~Cp~Hg~~fd~~G~~~~ 80 (116)
T cd03532 2 PRNAWYVAAWADELG-DKPLARTLLGEPVVLYRTQDGRVAALEDRCPHRSAPLSKGSVEGGGLVCGYHGLEFDSDGRCVH 80 (116)
T ss_pred cCCcEEEEEEHHHcC-CCcEEEEECCceEEEEECCCCCEEEeCCcCCCCCCCccCCcccCCEEEeCCCCcEEcCCCCEEe
Confidence 578999999999999 8899999999999999988999999999999999999999999999999999999999999999
Q ss_pred CCCcc--cccccccccceEEeeceEEEecCCC
Q 010738 294 MPSTQ--LRNVKIKSLPCFEQEGMIWIWPGDE 323 (502)
Q Consensus 294 vP~~~--~~~~~L~~~pV~e~~G~IwV~lg~~ 323 (502)
+|... ....+|++|||++++|+|||+++++
T Consensus 81 ~p~~~~~~~~~~l~~~~v~~~~g~v~v~~~~~ 112 (116)
T cd03532 81 MPGQERVPAKACVRSYPVVERDALIWIWMGDA 112 (116)
T ss_pred CCCCCCCCCccccccCCEEEECCEEEEEcCCc
Confidence 99854 2346799999999999999999865
No 15
>cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The
Probab=99.95 E-value=9.1e-28 Score=219.02 Aligned_cols=113 Identities=30% Similarity=0.797 Sum_probs=101.6
Q ss_pred ccccceEEeeecCCCCCCCceeEeeCCeeEEEEEcC-CCceEEEeecCCCCCCCCCCCCcc-ceeeeeeecceEEcCCCC
Q 010738 213 RLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK-DGIPGCVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTDGK 290 (502)
Q Consensus 213 ~l~~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~-dG~v~A~~N~CpHRGa~Ls~G~v~-~~~IvCPYHGW~FdldG~ 290 (502)
.+++.|++|+.++||++|+++.++++|++|+|+|+. ||+++|+.|+|||||++|+.|.+. ++.|+||||||+||.+|+
T Consensus 13 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~dG~~~A~~n~CpHrga~L~~G~~~~~~~i~CP~Hgw~Fd~tG~ 92 (138)
T cd03480 13 DWREVWYPVAYVEDLDPSRPTPFTLLGRDLVIWWDRNSQQWRAFDDQCPHRLAPLSEGRIDEEGCLECPYHGWSFDGSGS 92 (138)
T ss_pred CCccceEEEEEHHHCCCCCcEEEEECCeeEEEEEECCCCEEEEEcCCCcCCcCccccceEcCCCEEEeCCCCCEECCCCC
Confidence 457899999999999999999999999999999986 999999999999999999999875 569999999999999999
Q ss_pred cccCCCccc-------ccccccccceEEeeceEEEecCCCCC
Q 010738 291 CEKMPSTQL-------RNVKIKSLPCFEQEGMIWIWPGDEPP 325 (502)
Q Consensus 291 cv~vP~~~~-------~~~~L~~~pV~e~~G~IwV~lg~~~p 325 (502)
|+.+|.... ...+|++|||++++|+|||+++++++
T Consensus 93 ~~~~P~~~~~g~~~~~~~~~l~~ypv~v~~g~V~V~~~~~~~ 134 (138)
T cd03480 93 CQRIPQAAEGGKAHTSPRACVASLPTAVRQGLLFVWPGEPEN 134 (138)
T ss_pred EEECCCCccccccCCCcccccceEeEEEECCEEEEecCChHh
Confidence 999997532 23679999999999999999986543
No 16
>cd03541 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. CMO is a novel RO found in certain plants which catalyzes the first step in betaine synthesis. CMO is not found in animals or bacteria. In these organisms, the first step in betaine synthesis is catalyzed by either the membrane-bound choline dehydrogenase (CDH) or the soluble choline oxidase (COX).
Probab=99.94 E-value=2.6e-27 Score=210.84 Aligned_cols=107 Identities=25% Similarity=0.428 Sum_probs=99.3
Q ss_pred ceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcCCCCcccCC
Q 010738 217 FWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295 (502)
Q Consensus 217 ~W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~FdldG~cv~vP 295 (502)
.|++||+++||++ |++++++++|++|+|+|+.||+++|+.|+|||||++|+.|.++++.|+||||||+||++|+|+.+|
T Consensus 1 ~W~~v~~~~el~~~g~~~~~~~~g~~i~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~i~CP~Hgw~f~l~G~l~~~P 80 (118)
T cd03541 1 GWQVAGYSDQVKEKNQYFTGRLGNVEYVVCRDGNGKLHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGLDGSLTKAT 80 (118)
T ss_pred CCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCCEEEEeCCCCCCcCCccCCccccCEEEeCCCCCEEcCCCeEEeCC
Confidence 4999999999997 689999999999999999999999999999999999999999889999999999999999999999
Q ss_pred Cccc------ccccccccceEEeeceEEEecCCC
Q 010738 296 STQL------RNVKIKSLPCFEQEGMIWIWPGDE 323 (502)
Q Consensus 296 ~~~~------~~~~L~~~pV~e~~G~IwV~lg~~ 323 (502)
.... ...+|++++|.+++|+|||+++++
T Consensus 81 ~~~~~~~~~~~~~~L~~~~~~~~~g~vfv~~~~~ 114 (118)
T cd03541 81 QATGIQNFNPKELGLVPLKVAEWGPFVLISVDRS 114 (118)
T ss_pred CcccccCCCHHHCCCceEeEEEECCEEEEEeCCC
Confidence 8642 347899999999999999999864
No 17
>cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H). S5H converts salicylate (2-hydroxybenzoate), a metabolic intermediate of phenanthrene, to gentisate (2,5-dihydroxybenzoate) as part of an alternate pathway for naphthalene catabolism. S5H is a multicomponent enzyme made up of NagGH (the oxygenase components), NagAa (the ferredoxin reductase component), and NagAb (the ferredoxin component). The oxygenase component is made up of alpha (NagG) and beta (NagH) subunits.
Probab=99.94 E-value=2.3e-27 Score=214.19 Aligned_cols=108 Identities=22% Similarity=0.425 Sum_probs=97.1
Q ss_pred eEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCc-cceeeeeeecceEEcCCCCcccCC
Q 010738 218 WFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP 295 (502)
Q Consensus 218 W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v-~~~~IvCPYHGW~FdldG~cv~vP 295 (502)
|++||+++||++ |+++++.+++.+|+|+|+.||+++||.|+|||||++|+.|.. +.+.|+||||||+||++|+|+.+|
T Consensus 1 W~~v~~~~~l~~~g~~~~~~~~~~~v~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~~l~CPyHgw~fdl~G~l~~~p 80 (129)
T cd03539 1 WCYVGLEAEIPNPGDFKRTLIGERSVIMTRDPDGGINVVENVCAHRGMRFCRERNGNAKDFVCPYHQWNYSLKGDLQGVP 80 (129)
T ss_pred CEEEEEHHHCCCCCCEEEEEECCcEEEEEECCCCCEEEEeccCcCCCCEeeeeccCccCEEECCCCCCEECCCCCEeecc
Confidence 999999999986 799999999999999999999999999999999999998754 456899999999999999999999
Q ss_pred Ccc-----------------cccccccccceEEeeceEEEecCCCCC
Q 010738 296 STQ-----------------LRNVKIKSLPCFEQEGMIWIWPGDEPP 325 (502)
Q Consensus 296 ~~~-----------------~~~~~L~~~pV~e~~G~IwV~lg~~~p 325 (502)
... ....+|++++|.+++|+|||+++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~~~ 127 (129)
T cd03539 81 FRRGVKKDGKVNGGMPKDFKTKDHGLTKLKVATRGGVVFASFDHDVE 127 (129)
T ss_pred ccccccccccccccccCCcChHHCCCceeeEeEECCEEEEEeCCCCC
Confidence 742 124679999999999999999987654
No 18
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=99.94 E-value=5.3e-27 Score=213.23 Aligned_cols=111 Identities=32% Similarity=0.644 Sum_probs=99.0
Q ss_pred ccccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCC--ccceeeeeeecceEEcC-CC
Q 010738 213 RLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYST-DG 289 (502)
Q Consensus 213 ~l~~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~--v~~~~IvCPYHGW~Fdl-dG 289 (502)
.|++.|++|++++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|. +.++.|+||||||+||+ +|
T Consensus 10 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~l~r-~~g~v~A~~n~CpHrg~~L~~g~~~~~~~~i~Cp~Hgw~Fdl~tG 88 (136)
T cd03548 10 GFRNHWYPALFSHELEEGEPKGIQLCGEPILLRR-VDGKVYALKDRCLHRGVPLSKKPECFTKGTITCWYHGWTYRLDDG 88 (136)
T ss_pred CcccCcEEEEEHHHCCCCCeEEEEECCcEEEEEe-cCCEEEEEeCcCcCCCCccccCcccccCCEEEecCCccEEeCCCc
Confidence 6789999999999999999999999999999999 59999999999999999999885 46789999999999997 89
Q ss_pred CcccCCCccc----ccccccccceEEeeceEEEecCCCC
Q 010738 290 KCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEP 324 (502)
Q Consensus 290 ~cv~vP~~~~----~~~~L~~~pV~e~~G~IwV~lg~~~ 324 (502)
+|+.+|..+. ...+|++|||++++|+|||++++..
T Consensus 89 ~~~~~~~~p~~~~~~~~~L~~ypv~~~~g~V~v~~~~~~ 127 (136)
T cd03548 89 KLVTILANPDDPLIGRTGLKTYPVEEAKGMIFVFVGDGD 127 (136)
T ss_pred cEEEcccCCCccccccCCCceEeEEEECCEEEEEeCCcc
Confidence 9998765332 1357999999999999999998643
No 19
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=99.94 E-value=4.1e-27 Score=212.25 Aligned_cols=115 Identities=23% Similarity=0.404 Sum_probs=101.1
Q ss_pred ccccccceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCc-cceeeeeeecceEEcCC
Q 010738 211 NTRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTD 288 (502)
Q Consensus 211 ~~~l~~~W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v-~~~~IvCPYHGW~Fdld 288 (502)
+.++++.|++||+++||++ |++..+.+++++|+|+|+.||+++|+.|+|||||++|+.|.. +++.|+||||||+||.|
T Consensus 2 ~~i~~~~W~~v~~~~el~~~g~~~~~~~~~~~i~l~r~~~g~i~A~~n~C~Hrg~~L~~g~~g~~~~i~CP~Hgw~fd~~ 81 (128)
T cd03472 2 ERVFARSWLLLGHETHIPKAGDYLTTYMGEDPVIVVRQKDGSIRVFLNQCRHRGMRICRSDAGNAKAFTCTYHGWAYDTA 81 (128)
T ss_pred cchhhCCCeEeEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEhhhCcCCCCeeeccCCCCcCEEECCcCCeEECCC
Confidence 4567899999999999987 677788899999999999999999999999999999998864 44689999999999999
Q ss_pred CCcccCCCccc--------ccccccccceEEeeceEEEecCCCCC
Q 010738 289 GKCEKMPSTQL--------RNVKIKSLPCFEQEGMIWIWPGDEPP 325 (502)
Q Consensus 289 G~cv~vP~~~~--------~~~~L~~~pV~e~~G~IwV~lg~~~p 325 (502)
|+|+++|..+. ...+|++++|.+++|+|||++++++|
T Consensus 82 G~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~g~vfv~~~~~~~ 126 (128)
T cd03472 82 GNLVNVPFEKEAFCDGLDKADWGPLQARVETYKGLIFANWDAEAP 126 (128)
T ss_pred cCEEeccCcccccccCCCHHHCCCcceeEeEECCEEEEEcCCCCC
Confidence 99999998532 13569999999999999999988754
No 20
>cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the i
Probab=99.93 E-value=4.9e-26 Score=199.95 Aligned_cols=107 Identities=33% Similarity=0.669 Sum_probs=98.9
Q ss_pred eEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCc-cceeeeeeecceEEcCCCCcccCC
Q 010738 218 WFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP 295 (502)
Q Consensus 218 W~~V~~~seL~-~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v-~~~~IvCPYHGW~FdldG~cv~vP 295 (502)
|++||.++||+ +|+.+.+.+.|++++|+|+.+|+++|+.|.|||||++|+.|.+ +++.|+||||||+||.+|+|+.+|
T Consensus 1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~g~~~a~~n~CpH~g~~L~~g~~~~~~~i~Cp~Hg~~Fd~~G~~~~~P 80 (118)
T cd03469 1 WYFVGHSSELPEPGDYVTLELGGEPLVLVRDRDGEVRAFHNVCPHRGARLCEGRGGNAGRLVCPYHGWTYDLDGKLVGVP 80 (118)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCccEEEEECCCCCEEEEEEeCCCCCCEeeeccCCCCCEEECCCCCCEECCCCcEEeCC
Confidence 99999999999 8999999999999999998899999999999999999999988 789999999999999999999999
Q ss_pred Cccc------ccccccccceEEeeceEEEecCCCC
Q 010738 296 STQL------RNVKIKSLPCFEQEGMIWIWPGDEP 324 (502)
Q Consensus 296 ~~~~------~~~~L~~~pV~e~~G~IwV~lg~~~ 324 (502)
.... ...+|++|+|++++|+|||+++++.
T Consensus 81 ~~~~~~~~~~~~~~L~~~~v~~~~g~v~v~~~~~~ 115 (118)
T cd03469 81 REEGFPGFDKEKLGLRTVPVEEWGGLIFVNLDPDA 115 (118)
T ss_pred cccccCCCCHHHCCCeEEEEEEECCEEEEEcCCCC
Confidence 8642 2467999999999999999998754
No 21
>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 1
Probab=99.93 E-value=9.8e-26 Score=201.62 Aligned_cols=110 Identities=21% Similarity=0.505 Sum_probs=96.1
Q ss_pred cceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccc-eeeeeeecceEEcCCCCccc
Q 010738 216 NFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-GRIQCPYHGWEYSTDGKCEK 293 (502)
Q Consensus 216 ~~W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~-~~IvCPYHGW~FdldG~cv~ 293 (502)
+.|++||+++||++ |++..+.+++.+++|+|+.+|+++|+.|+|||||++|+.|..++ +.|+||||||+||.||+|+.
T Consensus 1 ~~w~~v~~~~el~~~g~~~~~~~~~~~iiv~r~~~g~~~A~~n~CpHrg~~L~~g~~~~~~~i~Cp~Hgw~Fd~tG~~~~ 80 (123)
T cd03535 1 RAWVFLGHESEIPNAGDYVVRYIGDDSFIVCRDEDGEIRAMFNSCRHRGMQVCRAEMGNTSHFRCPYHGWTYRNTGRLVG 80 (123)
T ss_pred CCCEEEEEHHHCCCCCCEEEEEECCeEEEEEECCCCCEEEEcccCccCCCEeeccccCCCCEEECCcCCCEECCCcCEee
Confidence 47999999999988 67878889999999999889999999999999999999987654 68999999999999999999
Q ss_pred CCCccc--------ccccccccceE-EeeceEEEecCCCCC
Q 010738 294 MPSTQL--------RNVKIKSLPCF-EQEGMIWIWPGDEPP 325 (502)
Q Consensus 294 vP~~~~--------~~~~L~~~pV~-e~~G~IwV~lg~~~p 325 (502)
+|.... ...+|+++++. +++|+|||+++++++
T Consensus 81 ~p~~~~~~~~~~~~~~~~L~~~~~~e~~~g~vfv~l~~~~~ 121 (123)
T cd03535 81 VPAQQEAYGGGFDKSQWGLRPAPNLDSYNGLIFGSLDPKAP 121 (123)
T ss_pred CCCcccccccCcCHHHCCCccceeEEEECCEEEEEeCCCCC
Confidence 997432 23689999865 589999999987643
No 22
>cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO). DTDO is a novel aromatic-ring-hydroxylating dioxygenase found in Pseudomonas and other proteobacteria that degrades dehydroabietic acid (DhA). Specifically, DitA hydroxylates 7-oxodehydroabietic acid to 7-oxo-11,12-dihydroxy-8, 13-abietadien acid. The ditA1 and ditA2 genes encode the alpha and beta subunits of the oxygenase component of DTDO while the ditA3 gene encodes the ferredoxin component of DTDO. The organization of the genes encoding the various diterpenoid dioxygenase components, the phylogenetic distinctiveness of both the alpha subunit and the ferredoxin component, and the unusual iron-sulfur cluster of the ferredoxin all suggest that this enzyme belongs to a new class of aromatic ring-hydroxylating dioxygenases.
Probab=99.93 E-value=1.6e-25 Score=200.33 Aligned_cols=108 Identities=19% Similarity=0.358 Sum_probs=95.9
Q ss_pred eEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCcc-ceeeeeeecceEEcCCCCcccCC
Q 010738 218 WFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTDGKCEKMP 295 (502)
Q Consensus 218 W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~-~~~IvCPYHGW~FdldG~cv~vP 295 (502)
|+.||+++||++ |++..+.+++.+|+|+|+.+|+++|+.|+|||||++|+.|... ...|+||||||+||.+|+|+.+|
T Consensus 1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~g~v~A~~n~CpH~g~~L~~~~~~~~~~i~Cp~Hgw~fd~~G~~~~~p 80 (123)
T cd03536 1 WVLLGHESEIPNKGDFMVRDMGSDSVIVARDKDGEIHVSLNVCPHRGMRISTTDGGNTQIHVCIYHGWAFRPNGDFIGAP 80 (123)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEeeeCCCCCCCcccccCCCcCEEECCcCCCEECCCCcEEECC
Confidence 999999999998 6788888999999999988999999999999999999987654 35799999999999999999999
Q ss_pred Cccc---------ccccccccceEEeeceEEEecCCCCC
Q 010738 296 STQL---------RNVKIKSLPCFEQEGMIWIWPGDEPP 325 (502)
Q Consensus 296 ~~~~---------~~~~L~~~pV~e~~G~IwV~lg~~~p 325 (502)
..+. ...+|++|+|.+++|+||++++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~~~ 119 (123)
T cd03536 81 VEKECMHGKMRTKAELGLHKARVTLYGGLIFATWNIDGP 119 (123)
T ss_pred ccccccccCCCCHHHCCCcceeEEEECCEEEEEeCCCCC
Confidence 7532 23779999999999999999987643
No 23
>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol.
Probab=99.91 E-value=1.5e-24 Score=194.33 Aligned_cols=108 Identities=24% Similarity=0.468 Sum_probs=94.0
Q ss_pred eEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCc-cceeeeeeecceEEcCCCCcccCC
Q 010738 218 WFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP 295 (502)
Q Consensus 218 W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v-~~~~IvCPYHGW~FdldG~cv~vP 295 (502)
|+.||+.+||++ |+++.+++.|++|+|+|+.+|+++|+.|.|||||++|+.|.. +++.|+||||||+||.||+|+.+|
T Consensus 1 w~~v~~~~elp~~g~~~~~~~~~~~i~l~r~~~g~v~A~~n~C~Hrg~~L~~g~~~~~~~i~CP~Hg~~Fd~~G~~~~~p 80 (123)
T cd03542 1 WVYLAHESQIPNNNDYFTTTIGRQPVVITRDKDGELNAFINACSHRGAMLCRRKQGNKGTFTCPFHGWTFSNTGKLLKVK 80 (123)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCcEEEEEECCCCCEEEEcccCcCCCCccccccccCCCEEECcCCCCEecCCccEEECC
Confidence 899999999998 688899999999999999899999999999999999998754 456999999999999999999999
Q ss_pred Cccc----------ccccccccc-eEEeeceEEEecCCCCC
Q 010738 296 STQL----------RNVKIKSLP-CFEQEGMIWIWPGDEPP 325 (502)
Q Consensus 296 ~~~~----------~~~~L~~~p-V~e~~G~IwV~lg~~~p 325 (502)
.... ...+|++++ ++.++|+||+++++++|
T Consensus 81 ~~~~~~y~~~~~~~~~~~L~~~~~~~~~~g~v~~~~~~~~~ 121 (123)
T cd03542 81 DPKTAGYPEGFNCDGSHDLTKVARFESYRGFLFGSLNADVA 121 (123)
T ss_pred cccccCcCcccChhhcCCCccceeEEEECCEEEEEcCCCCC
Confidence 6421 135788886 55678999999988654
No 24
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=99.91 E-value=3e-24 Score=182.97 Aligned_cols=96 Identities=27% Similarity=0.530 Sum_probs=90.5
Q ss_pred eEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcC-CCCcccCCC
Q 010738 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 296 (502)
Q Consensus 218 W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~Fdl-dG~cv~vP~ 296 (502)
|++++.++||++|+++.+++.|.+++|+|+ +|+++|+.|+|||+|++|+.|...++.|+||||||+||+ +|+|+..|.
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~g~~~~v~r~-~~~~~a~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~fd~~~G~~~~~p~ 79 (98)
T cd03528 1 WVRVCAVDELPEGEPKRVDVGGRPIAVYRV-DGEFYATDDLCTHGDASLSEGYVEGGVIECPLHGGRFDLRTGKALSLPA 79 (98)
T ss_pred CeEEEEhhhcCCCCEEEEEECCeEEEEEEE-CCEEEEECCcCCCCCCCCCCCeEeCCEEEeCCcCCEEECCCCcccCCCC
Confidence 999999999999999999999999999997 569999999999999999999888899999999999997 999999887
Q ss_pred cccccccccccceEEeeceEEE
Q 010738 297 TQLRNVKIKSLPCFEQEGMIWI 318 (502)
Q Consensus 297 ~~~~~~~L~~~pV~e~~G~IwV 318 (502)
. .+|++|++++++|.|||
T Consensus 80 ~----~~L~~~~v~~~~g~v~v 97 (98)
T cd03528 80 T----EPLKTYPVKVEDGDVYV 97 (98)
T ss_pred C----CCcceEeEEEECCEEEE
Confidence 4 47999999999999998
No 25
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=99.90 E-value=9.4e-24 Score=180.48 Aligned_cols=97 Identities=21% Similarity=0.463 Sum_probs=89.1
Q ss_pred eEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcC-CCCcccCCC
Q 010738 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 296 (502)
Q Consensus 218 W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~Fdl-dG~cv~vP~ 296 (502)
|++|+.++||++|+.+.+.+.|++++|+|+.+|+++|+.|.|||||++|+.|.++++.|+||||||+||+ +|.+.. |.
T Consensus 1 w~~v~~~~~l~~~~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~~-p~ 79 (98)
T cd03530 1 WIDIGALEDIPPRGARKVQTGGGEIAVFRTADDEVFALENRCPHKGGPLSEGIVHGEYVTCPLHNWVIDLETGEAQG-PD 79 (98)
T ss_pred CEEEEEHHHCCCCCcEEEEECCEEEEEEEeCCCCEEEEcCcCCCCCCCccCCEEcCCEEECCCCCCEEECCCCCCCC-CC
Confidence 8999999999999889999999999999988899999999999999999999988999999999999997 788764 43
Q ss_pred cccccccccccceEEeeceEEEe
Q 010738 297 TQLRNVKIKSLPCFEQEGMIWIW 319 (502)
Q Consensus 297 ~~~~~~~L~~~pV~e~~G~IwV~ 319 (502)
..+|++||+++++|.|||+
T Consensus 80 ----~~~l~~y~v~v~~g~v~v~ 98 (98)
T cd03530 80 ----EGCVRTFPVKVEDGRVYLG 98 (98)
T ss_pred ----CCccceEeEEEECCEEEEC
Confidence 2469999999999999984
No 26
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=99.90 E-value=1.7e-23 Score=182.00 Aligned_cols=103 Identities=21% Similarity=0.374 Sum_probs=92.1
Q ss_pred eEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcC-CCCcccCCC
Q 010738 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 296 (502)
Q Consensus 218 W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~Fdl-dG~cv~vP~ 296 (502)
|++|+.++||++|+++.+.+.|.+++++|..+|+++|+.|+|||||++|+.|..+++.|+||||||+||+ +|.+.. |.
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~g~~~g~~i~CP~Hg~~Fdl~~G~~~~-~~ 79 (108)
T cd03474 1 FTKVCSLDDVWEGEMELVDVDGEEVLLVAPEGGEFRAFQGICPHQEIPLAEGGFDGGVLTCRAHLWQFDADTGEGLN-PR 79 (108)
T ss_pred CeEeeehhccCCCceEEEEECCeEEEEEEccCCeEEEEcCcCCCCCCCcccCcccCCEEEeCCcCCEEECCCccccC-CC
Confidence 8999999999999999999999999999988999999999999999999999888889999999999997 576654 32
Q ss_pred cccccccccccceEEeeceEEEecCCCCC
Q 010738 297 TQLRNVKIKSLPCFEQEGMIWIWPGDEPP 325 (502)
Q Consensus 297 ~~~~~~~L~~~pV~e~~G~IwV~lg~~~p 325 (502)
..+|++|+|++++|.|||++..+++
T Consensus 80 ----~~~L~~~~v~v~~g~v~v~~~~~~~ 104 (108)
T cd03474 80 ----DCRLARYPVKVEGGDILVDTEGVLP 104 (108)
T ss_pred ----CCccceEeEEEECCEEEEeCCCcCc
Confidence 3579999999999999999875443
No 27
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=99.88 E-value=1.2e-22 Score=175.56 Aligned_cols=99 Identities=21% Similarity=0.397 Sum_probs=92.3
Q ss_pred ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcC-CCCcccCC
Q 010738 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMP 295 (502)
Q Consensus 217 ~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~Fdl-dG~cv~vP 295 (502)
.|+.+|..+||++|..+.+.+.|.+++|+|..+|+++|++|.|||+|++|+.|.++++.|+||+|||+||+ ||+|+..|
T Consensus 1 ~w~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~G~~~~~~i~CP~Hg~~Fdl~tG~~~~~p 80 (101)
T TIGR02377 1 NWVKACDADDIGREDVARFDHGGRTFAIYRTPDDQYYATDGLCTHEYAHLADGLVMDTTVECPKHAGCFDYRTGEALNPP 80 (101)
T ss_pred CcEEEEEHHHcCCCCEEEEEECCeEEEEEEeCCCEEEEEcCcCCCCCCCCCCCEEcCCEEECCccCCEEECCCCcccCCC
Confidence 49999999999999889999999999999977899999999999999999999999999999999999995 99999988
Q ss_pred CcccccccccccceEEeeceEEEe
Q 010738 296 STQLRNVKIKSLPCFEQEGMIWIW 319 (502)
Q Consensus 296 ~~~~~~~~L~~~pV~e~~G~IwV~ 319 (502)
.. .+|++||+++++|.|||.
T Consensus 81 ~~----~~l~~y~v~v~~g~v~V~ 100 (101)
T TIGR02377 81 VC----VNLKTYPVKVVDGAVYVD 100 (101)
T ss_pred cc----CCcceEeEEEECCEEEEe
Confidence 63 369999999999999985
No 28
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=99.88 E-value=1.3e-22 Score=175.52 Aligned_cols=96 Identities=24% Similarity=0.319 Sum_probs=87.1
Q ss_pred eEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCC-CCCCCcc----ceeeeeeecceEEcC-CCCc
Q 010738 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACP-LHLGSVN----EGRIQCPYHGWEYST-DGKC 291 (502)
Q Consensus 218 W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~-Ls~G~v~----~~~IvCPYHGW~Fdl-dG~c 291 (502)
|++||.++||++|..+.+.+.|++|+|+|..+|+++|+.|.|||+|++ |+.|.+. +..|+||||||.||+ +|+|
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~ll~~G~~~~~~~~~~i~Cp~Hg~~Fdl~tG~~ 80 (103)
T cd03529 1 WQTVCALDDLPPGSGVAALVGDTQIAIFRLPGREVYAVQNMDPHSRANVLSRGIVGDIGGEPVVASPLYKQHFSLKTGRC 80 (103)
T ss_pred CEEEeEHHHCCCCCcEEEEECCEEEEEEEeCCCeEEEEeCcCCCCCCcccCCceEcccCCCeEEECCCCCCEEEcCCCCc
Confidence 899999999999999999999999999998777999999999999997 7777653 348999999999994 9999
Q ss_pred ccCCCcccccccccccceEEeeceEEE
Q 010738 292 EKMPSTQLRNVKIKSLPCFEQEGMIWI 318 (502)
Q Consensus 292 v~vP~~~~~~~~L~~~pV~e~~G~IwV 318 (502)
+..|. .+|++|||++++|.|||
T Consensus 81 ~~~p~-----~~l~~y~v~~~~g~v~v 102 (103)
T cd03529 81 LEDED-----VSVATFPVRVEDGEVYV 102 (103)
T ss_pred cCCCC-----ccEeeEeEEEECCEEEE
Confidence 99875 36999999999999998
No 29
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=99.88 E-value=1.2e-22 Score=176.10 Aligned_cols=99 Identities=23% Similarity=0.412 Sum_probs=89.6
Q ss_pred ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCC-CCCCCCCCcccee----eeeeecceEEcC-CCC
Q 010738 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHR-ACPLHLGSVNEGR----IQCPYHGWEYST-DGK 290 (502)
Q Consensus 217 ~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHR-Ga~Ls~G~v~~~~----IvCPYHGW~Fdl-dG~ 290 (502)
.|++|+.++||++|..+.+.+.|.+++|+|..+|+++|+.|+|||+ +.+|+.|.+.++. |+||||||+||+ +|+
T Consensus 1 ~w~~v~~~~el~~g~~~~~~v~g~~l~v~r~~~~~~~a~~~~CpH~g~~~L~~g~~~~~~~~~~i~Cp~Hg~~Fdl~tG~ 80 (105)
T TIGR02378 1 TWQDICAIDDIPEETGVCVLLGDTQIAIFRVPGDQVFAIQNMCPHKRAFVLSRGIVGDAQGELWVACPLHKRNFRLEDGR 80 (105)
T ss_pred CcEEEEEHHHCCCCCcEEEEECCEEEEEEEeCCCcEEEEeCcCCCCCCccccceEEccCCCcEEEECCcCCCEEEcCCcc
Confidence 5999999999999999999999999999998788999999999999 8999988765554 999999999996 899
Q ss_pred cccCCCcccccccccccceEEeeceEEEec
Q 010738 291 CEKMPSTQLRNVKIKSLPCFEQEGMIWIWP 320 (502)
Q Consensus 291 cv~vP~~~~~~~~L~~~pV~e~~G~IwV~l 320 (502)
|+..|. .+|++||+++++|.|||-+
T Consensus 81 ~~~~~~-----~~L~~y~v~v~~g~v~v~~ 105 (105)
T TIGR02378 81 CLEDDS-----GSVRTYEVRVEDGRVYVAL 105 (105)
T ss_pred ccCCCC-----ccEeeEeEEEECCEEEEeC
Confidence 998764 4799999999999999953
No 30
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=99.87 E-value=3e-22 Score=170.47 Aligned_cols=92 Identities=26% Similarity=0.500 Sum_probs=86.5
Q ss_pred eeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcC-CCCcccCCCccc
Q 010738 221 VAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPSTQL 299 (502)
Q Consensus 221 V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~Fdl-dG~cv~vP~~~~ 299 (502)
||.++||++|+.+.+.++|.+++|+|. +|+++|+.|+|||+|++|+.|.+.++.|+||||||+||+ +|+|+..|..
T Consensus 3 v~~~~~l~~g~~~~~~~~~~~v~v~r~-~g~~~A~~~~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~~~p~~-- 79 (95)
T cd03478 3 VCRLSDLGDGEMKEVDVGDGKVLLVRQ-GGEVHAIGAKCPHYGAPLAKGVLTDGRIRCPWHGACFNLRTGDIEDAPAL-- 79 (95)
T ss_pred eeehhhCCCCCEEEEEeCCcEEEEEEE-CCEEEEEcCcCcCCCCccCCCeEeCCEEEcCCCCCEEECCCCcCcCCCcc--
Confidence 789999999999999999999999997 899999999999999999999888999999999999997 9999999874
Q ss_pred ccccccccceEEeeceEE
Q 010738 300 RNVKIKSLPCFEQEGMIW 317 (502)
Q Consensus 300 ~~~~L~~~pV~e~~G~Iw 317 (502)
..|++|++++++|.||
T Consensus 80 --~~l~~~~v~~~~g~i~ 95 (95)
T cd03478 80 --DSLPCYEVEVEDGRVY 95 (95)
T ss_pred --CCcceEEEEEECCEEC
Confidence 3699999999999997
No 31
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=99.87 E-value=5e-22 Score=173.02 Aligned_cols=101 Identities=20% Similarity=0.350 Sum_probs=90.8
Q ss_pred ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccc-eeeeeeecceEEcC-CCCcccC
Q 010738 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-GRIQCPYHGWEYST-DGKCEKM 294 (502)
Q Consensus 217 ~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~-~~IvCPYHGW~Fdl-dG~cv~v 294 (502)
.|+.||..+||++|..+.+.+. .+++|+|. +|+++|++|+|||+|++|+.|.+++ +.|+||+|||+||+ +|+|+..
T Consensus 2 ~~~~v~~~~~l~~g~~~~~~~~-~~i~v~~~-~g~~~A~~~~CpH~g~~L~~G~~~~~~~i~Cp~Hg~~Fd~~tG~~~~~ 79 (106)
T PRK09965 2 NRIYACPVADLPEGEALRVDTS-PVIALFNV-GGEFYAIDDRCSHGNASLSEGYLEDDATVECPLHAASFCLRTGKALCL 79 (106)
T ss_pred CcEEeeeHHHcCCCCeEEEeCC-CeEEEEEE-CCEEEEEeCcCCCCCCCCCceEECCCCEEEcCCCCCEEEcCCCCeeCC
Confidence 4999999999999988888876 88999995 8999999999999999999998877 78999999999996 8999987
Q ss_pred CCcccccccccccceEEeeceEEEecCCC
Q 010738 295 PSTQLRNVKIKSLPCFEQEGMIWIWPGDE 323 (502)
Q Consensus 295 P~~~~~~~~L~~~pV~e~~G~IwV~lg~~ 323 (502)
|.. .+|++|++++++|.|||.+.++
T Consensus 80 p~~----~~l~~y~v~v~~g~v~v~~~~~ 104 (106)
T PRK09965 80 PAT----DPLRTYPVHVEGGDIFIDLPEA 104 (106)
T ss_pred CCC----CCcceEeEEEECCEEEEEccCC
Confidence 753 5799999999999999987653
No 32
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=99.83 E-value=6.9e-21 Score=161.77 Aligned_cols=93 Identities=31% Similarity=0.661 Sum_probs=79.0
Q ss_pred ceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCC--ccceeeeeeecceEEcCC-CCcc
Q 010738 217 FWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYSTD-GKCE 292 (502)
Q Consensus 217 ~W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~--v~~~~IvCPYHGW~Fdld-G~cv 292 (502)
.|++|++++||++ |+...+.+ +...++++..+|+++|+.|+|||+|++|+.|. .+++.|+||||||+||++ |+|+
T Consensus 1 ~W~~v~~~~el~~~~~~~~~~~-~~~~v~~~~~~g~~~A~~~~CpH~g~~l~~~~~~~~~~~i~Cp~Hg~~Fd~~tG~~~ 79 (97)
T PF00355_consen 1 QWVPVCRSSELPEPGDVKRVDV-GGKLVLVRRSDGEIYAFSNRCPHQGCPLSEGPFSEDGGVIVCPCHGWRFDLDTGECV 79 (97)
T ss_dssp SEEEEEEGGGSHSTTEEEEEEE-TTEEEEEEETTTEEEEEESB-TTTSBBGGCSSEETTTTEEEETTTTEEEETTTSBEE
T ss_pred CEEEeeEHHHCCCCCCEEEEEc-CCcEEEEEeCCCCEEEEEccCCccceeEcceecccccCEEEeCCcCCEEeCCCceEe
Confidence 5999999999999 78888888 54455555689999999999999999999994 446799999999999986 9999
Q ss_pred cCCCcccccccccccceEEeec
Q 010738 293 KMPSTQLRNVKIKSLPCFEQEG 314 (502)
Q Consensus 293 ~vP~~~~~~~~L~~~pV~e~~G 314 (502)
..|... +++.||++++++
T Consensus 80 ~~p~~~----~l~~~~v~ve~~ 97 (97)
T PF00355_consen 80 GGPAPR----PLPLYPVKVEGD 97 (97)
T ss_dssp ESTTCS----BSTEEEEEEETT
T ss_pred cCCCCC----CcCCCCeEEeCC
Confidence 999853 689999998753
No 33
>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A.
Probab=99.82 E-value=2.4e-20 Score=162.74 Aligned_cols=98 Identities=28% Similarity=0.612 Sum_probs=90.8
Q ss_pred ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCC-CCCCCCCCCccce----eeeeeecceEEcC-CCC
Q 010738 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAH-RACPLHLGSVNEG----RIQCPYHGWEYST-DGK 290 (502)
Q Consensus 217 ~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpH-RGa~Ls~G~v~~~----~IvCPYHGW~Fdl-dG~ 290 (502)
+|..||..+||+++..+.+.+.|.+|+|||..+|+++|++|.||| ++.+|+.|.+++. .|.||.|+|.||+ +|+
T Consensus 1 ~W~~v~~~~~L~~~~~~~~~v~g~~Ialf~~~~~~vyAi~n~Cph~~~~~Ls~G~i~~~~g~~~V~CPlH~~~f~L~tG~ 80 (104)
T PF13806_consen 1 SWVPVCPLDDLPPGEGRAVEVDGRQIALFRVRDGEVYAIDNRCPHSQAGPLSDGLIGDGNGEPCVACPLHKWRFDLRTGE 80 (104)
T ss_dssp SEEEEEETTTSCTTSEEEEEETTEEEEEEEESTTEEEEEESBETTTTSSCGCGSEEEECTTEEEEEETTTTEEEETTTTE
T ss_pred CeeEeccHHHCCCCCcEEEEECCeEEEEEEeCCCCEEEEeccCCccCCcccceeEEccCCCCEEEECCCCCCeEECCCcC
Confidence 599999999999999999999999999999879999999999999 8999999987765 9999999999997 899
Q ss_pred cccCCCcccccccccccceEEeeceEEEe
Q 010738 291 CEKMPSTQLRNVKIKSLPCFEQEGMIWIW 319 (502)
Q Consensus 291 cv~vP~~~~~~~~L~~~pV~e~~G~IwV~ 319 (502)
|+..|. .++++|||++++|.|||.
T Consensus 81 ~~~~~~-----~~l~~ypvrv~~g~V~V~ 104 (104)
T PF13806_consen 81 CLEDPD-----VSLRTYPVRVEDGQVYVE 104 (104)
T ss_dssp ESSECS-----EBSBEEEEEECTTEEEEE
T ss_pred cCCCCC-----CcEEeEEEEEECCEEEEC
Confidence 998665 479999999999999984
No 34
>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.
Probab=99.82 E-value=4.8e-20 Score=157.26 Aligned_cols=95 Identities=25% Similarity=0.481 Sum_probs=87.6
Q ss_pred eEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcC-CCCcccCCC
Q 010738 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 296 (502)
Q Consensus 218 W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~Fdl-dG~cv~vP~ 296 (502)
|++++..++|++++.+.+.+.+.+++|+|..+|+++|++|.|||+|++|..+..+++.|+||+|||.||+ ||+|+..|.
T Consensus 1 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~a~~~~CpH~g~~l~~~~~~~~~i~Cp~H~~~f~~~~G~~~~~p~ 80 (98)
T cd03467 1 WVVVGALSELPPGGGRVVVVGGGPVVVVRREGGEVYALSNRCTHQGCPLSEGEGEDGCIVCPCHGSRFDLRTGEVVSGPA 80 (98)
T ss_pred CEEeeeccccCCCceEEEEECCeEEEEEEeCCCEEEEEcCcCCCCCccCCcCccCCCEEEeCCCCCEEeCCCccCcCCCC
Confidence 8999999999999999999999999999988899999999999999999998888899999999999998 999999887
Q ss_pred cccccccccccceEEe-eceE
Q 010738 297 TQLRNVKIKSLPCFEQ-EGMI 316 (502)
Q Consensus 297 ~~~~~~~L~~~pV~e~-~G~I 316 (502)
...|++|++++. ++.|
T Consensus 81 ----~~~l~~~~v~~~~~~~~ 97 (98)
T cd03467 81 ----PRPLPKYPVKVEGDGVV 97 (98)
T ss_pred ----CCCcCEEEEEEeCCceE
Confidence 357999999998 4444
No 35
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=99.81 E-value=8.5e-20 Score=160.15 Aligned_cols=98 Identities=19% Similarity=0.216 Sum_probs=87.3
Q ss_pred ceEEeeecCCCCCCCceeEeeCCeeEEEEEc-CCCceEEEeecCCCCCCC-CCCCCccc----eeeeeeecceEEcC-CC
Q 010738 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRG-KDGIPGCVQNTCAHRACP-LHLGSVNE----GRIQCPYHGWEYST-DG 289 (502)
Q Consensus 217 ~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~-~dG~v~A~~N~CpHRGa~-Ls~G~v~~----~~IvCPYHGW~Fdl-dG 289 (502)
.|..||..+||++|..+.+.+.|++|+|+|. .+|+++|++|.|||.|++ |+.|.+.+ ..|+||+|||+||+ +|
T Consensus 3 ~~~~v~~~~dl~~g~~~~v~v~g~~i~l~~~~~~g~~~A~~n~CpH~~~~~L~~G~~~~~~g~~~V~CP~H~~~Fdl~TG 82 (108)
T PRK09511 3 QWKDICKIDDILPGTGVCALVGDEQVAIFRPYHDEQVFAISNIDPFFQASVLSRGLIAEHQGELWVASPLKKQRFRLSDG 82 (108)
T ss_pred cceEeeEHhHcCCCceEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCceEccCCCeEEEECCCCCCEEECCCc
Confidence 4999999999999999999999999999994 589999999999999985 99997732 25999999999996 89
Q ss_pred CcccCCCcccccccccccceEEeeceEEEe
Q 010738 290 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIW 319 (502)
Q Consensus 290 ~cv~vP~~~~~~~~L~~~pV~e~~G~IwV~ 319 (502)
+|+..|. ..|++|||++++|.|||.
T Consensus 83 ~~~~~~~-----~~l~typV~ve~g~V~v~ 107 (108)
T PRK09511 83 LCMEDEQ-----FSVKHYDARVKDGVVQLR 107 (108)
T ss_pred ccCCCCC-----ccEeeEeEEEECCEEEEe
Confidence 9997664 379999999999999984
No 36
>cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea.
Probab=99.79 E-value=2.5e-19 Score=152.66 Aligned_cols=87 Identities=24% Similarity=0.387 Sum_probs=78.6
Q ss_pred eeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcCCCCcccCCCcccc
Q 010738 221 VAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 300 (502)
Q Consensus 221 V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~FdldG~cv~vP~~~~~ 300 (502)
+|..+||++|+.+.+.+.|++++|+|+.+|+++|+.|+|||+|++|+.|.. ++.|+||||||+||.||+|+..|..
T Consensus 2 ~~~~~dl~~g~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~l~~g~~-~~~i~CP~Hg~~Fd~~G~~~~~Pa~--- 77 (91)
T cd03477 2 ITDIEDLAPGEGGVVNIGGKRLAVYRDEDGVLHTVSATCTHLGCIVHWNDA-EKSWDCPCHGSRFSYDGEVIEGPAV--- 77 (91)
T ss_pred ccchhhcCCCCeEEEEECCEEEEEEECCCCCEEEEcCcCCCCCCCCcccCC-CCEEECCCCCCEECCCCcEeeCCCC---
Confidence 578899999999999999999999999899999999999999999998864 5689999999999999999999873
Q ss_pred cccccccceEEe
Q 010738 301 NVKIKSLPCFEQ 312 (502)
Q Consensus 301 ~~~L~~~pV~e~ 312 (502)
..|++|++...
T Consensus 78 -~~l~~y~v~~~ 88 (91)
T cd03477 78 -SGLKPADDAPI 88 (91)
T ss_pred -CCCCeeEeecc
Confidence 47888988753
No 37
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=99.79 E-value=4.1e-19 Score=155.57 Aligned_cols=101 Identities=23% Similarity=0.432 Sum_probs=89.3
Q ss_pred cceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccce-eeeeeecceEEcC-CCCccc
Q 010738 216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEG-RIQCPYHGWEYST-DGKCEK 293 (502)
Q Consensus 216 ~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~-~IvCPYHGW~Fdl-dG~cv~ 293 (502)
..|..+|..+||+++..+.+.+.+...++++..+|+++|+.|+|||.|++|+.|.+.+. .|+||.|+|.||+ ||+|+.
T Consensus 3 ~~w~~~c~~~dl~~~~~~~v~~~~~~~~~~~~~~g~v~A~~n~CpH~~~~l~~g~v~~~~~i~Cp~H~a~Fdl~tG~~~~ 82 (106)
T COG2146 3 MNWIRICKVDDLPEGGGVRVLVGGGRFALVVRADGEVFAIDNRCPHAGAPLSRGLVEGDETVVCPLHGARFDLRTGECLE 82 (106)
T ss_pred CceEEEEehHhcCCCCceEEEecCCEEEEEEecCCEEEEEeCcCCCCCCcccccEeCCCCEEECCccCCEEEcCCCceec
Confidence 57999999999999888888884425666666899999999999999999999999886 5999999999996 899999
Q ss_pred CCCcccccccccccceEEeeceEEEec
Q 010738 294 MPSTQLRNVKIKSLPCFEQEGMIWIWP 320 (502)
Q Consensus 294 vP~~~~~~~~L~~~pV~e~~G~IwV~l 320 (502)
.|... .|++||+++.+|.|||.+
T Consensus 83 ~p~~~----~l~~y~vrve~g~v~v~~ 105 (106)
T COG2146 83 PPAGK----TLKTYPVRVEGGRVFVDL 105 (106)
T ss_pred CCCCC----ceeEEeEEEECCEEEEec
Confidence 99753 299999999999999975
No 38
>cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate. It consists of two subunits, a large subunit similar to members of the DMSO reductase family of molybdenum enzymes and a small subunit with a Rieske-type [2Fe-2S] cluster. The large subunit of ArOX contains the molybdenum site at which the oxidation of arsenite occurs. The small subunit contains a domain homologous to the Rieske domains of the cytochrome bc(1) and cytochrome b6f complexes as well as naphthalene 1,2-dioxygenase. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer.
Probab=99.72 E-value=1.6e-17 Score=149.75 Aligned_cols=95 Identities=20% Similarity=0.319 Sum_probs=85.1
Q ss_pred EeeecCCCCCCCceeEeeCC--eeEEEEEcC---------CCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcC-
Q 010738 220 PVAFSTDLKDDTMVPFDCFE--EPWVIFRGK---------DGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST- 287 (502)
Q Consensus 220 ~V~~~seL~~g~~~~~~l~G--~~IVV~R~~---------dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~Fdl- 287 (502)
.||..++|++|+.+.+.+.+ .+++|+|.. +|+++|++|+|||+|++|+.+. +++.|+||+|||+||.
T Consensus 5 ~v~~~~~l~~g~~~~~~~~~~~~~i~v~r~~~~~~~~~~~~g~~~A~~~~CpH~g~~L~~g~-~~~~v~CP~Hg~~Fdl~ 83 (126)
T cd03476 5 KVANLSQLSPGQPVTFNYPDESSPCVLVKLGVPVPGGVGPDNDIVAFSALCTHMGCPLTYDP-SNKTFVCPCHFSQFDPA 83 (126)
T ss_pred EEeeHHHCCCCCeEEEEcCCCCCcEEEEECCccccCccccCCEEEEEeCcCCCCCccccccc-cCCEEEccCcCCEEeCC
Confidence 58999999999999999887 899999964 7999999999999999999977 6789999999999997
Q ss_pred -CCCcccCCCcccccccccccceEEe--eceEEEe
Q 010738 288 -DGKCEKMPSTQLRNVKIKSLPCFEQ--EGMIWIW 319 (502)
Q Consensus 288 -dG~cv~vP~~~~~~~~L~~~pV~e~--~G~IwV~ 319 (502)
+|+|+..|. ...|+.||++++ +|.|||.
T Consensus 84 tgG~~~~gPa----~~~L~~ypv~ve~~~g~V~~~ 114 (126)
T cd03476 84 RGGQMVSGQA----TQNLPQIVLEYDEASGDIYAV 114 (126)
T ss_pred CCCeEEcCCC----CCCCCeEEEEEECCCCEEEEE
Confidence 479998786 357999999999 9999984
No 39
>cd03471 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The cytochrome b6f complex from Mastigocladus laminosus, a thermophilic cyanobacterium, contains four large subunits, including cytochrome f, cytochrome b6, the Rieske ISP, and subunit IV; as well as four small hydrophobic subunits, PetG, PetL, PetM, and PetN. Rieske ISP, one of the large subunits of the cytochrome bc-type complexes, is involved in respiratory and photosynthetic electron transfer. The core of the chloroplast b6f complex is similar to the analogous respiratory cytochrome bc(1) complex, but the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.68 E-value=1.8e-16 Score=142.85 Aligned_cols=89 Identities=18% Similarity=0.369 Sum_probs=71.8
Q ss_pred CCCceeEe--eCCeeEEEEEcCCCce--EEEeecCCCCCCCCCCCCccceeeeeeecceEEcCCCCcccCCCcccccccc
Q 010738 229 DDTMVPFD--CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKI 304 (502)
Q Consensus 229 ~g~~~~~~--l~G~~IVV~R~~dG~v--~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~FdldG~cv~vP~~~~~~~~L 304 (502)
+|++..+. ..+..|+|++ .+|++ +|++|+|||+|++|..+.. ++.|+||+|||+||.+|+++..|. ..+|
T Consensus 22 ~~~~~~~~~~~~~~~Ilv~~-~dg~i~~~A~~~~CpH~G~~l~~~~~-~~~i~CP~Hg~~Fd~tG~~~~gPa----~~~L 95 (126)
T cd03471 22 PGDRSLVQGLKGDPTYLIVE-EDKTIANYGINAVCTHLGCVVPWNAA-ENKFKCPCHGSQYDATGKVVRGPA----PLSL 95 (126)
T ss_pred CCCeEEEEEecCCeEEEEEe-CCCeEEEEEecCCCcCCCCCcCccCC-CCEEEcCCCCCEECCCCCEecCCC----CCCC
Confidence 46666555 3445555544 68977 7999999999999998754 568999999999999999998886 3579
Q ss_pred cccceEEeeceEEEecCCC
Q 010738 305 KSLPCFEQEGMIWIWPGDE 323 (502)
Q Consensus 305 ~~~pV~e~~G~IwV~lg~~ 323 (502)
+.|++++++|.|||.+..+
T Consensus 96 ~~y~V~vedg~I~V~~~~~ 114 (126)
T cd03471 96 ALVHATVDDDKVVLSPWTE 114 (126)
T ss_pred ceEeEEEECCEEEEEECcc
Confidence 9999999999999975543
No 40
>TIGR02694 arsenite_ox_S arsenite oxidase, small subunit. This model represents the small subunit of an arsenite oxidase complex. It is a Rieske protein and appears to rely on the Tat (twin-arginine translocation) system to cross the membrane. Although this enzyme could run in the direction of arsenate reduction to arsenite in principle, the relevant biological function is arsenite oxidation for energy metabolism, not arsenic resistance. Homologs to both large (TIGR02693) and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7.
Probab=99.61 E-value=1.7e-15 Score=137.16 Aligned_cols=94 Identities=20% Similarity=0.348 Sum_probs=81.4
Q ss_pred EeeecCCCCCCCceeEeeCC--eeEEEEEc---------CCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcCC
Q 010738 220 PVAFSTDLKDDTMVPFDCFE--EPWVIFRG---------KDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTD 288 (502)
Q Consensus 220 ~V~~~seL~~g~~~~~~l~G--~~IVV~R~---------~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~Fdld 288 (502)
.||..+||++|.++.+.+.+ .+++++|. .+|+++|++|.|||.|++|+.+. +++.|.||+|||+||.+
T Consensus 8 ~v~~~~dl~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~G~~~A~~~~CpH~g~~L~~~~-~~~~i~CP~Hga~Fdl~ 86 (129)
T TIGR02694 8 RVANISELKLNEPLDFNYPDASSPGVLLKLGTPVEGGVGPDGDIVAFSTLCTHMGCPVSYSA-DNKTFNCPCHFSVFDPE 86 (129)
T ss_pred EEEeHHHCCCCCCEEEecCCCCCCEEEEecCCcccCccccCCEEEEEeCcCCCCCccccccc-CCCEEEcCCCCCEECCC
Confidence 58999999999898888765 47888883 58999999999999999999875 67899999999999975
Q ss_pred --CCcccCCCcccccccccccceEEe-eceEEE
Q 010738 289 --GKCEKMPSTQLRNVKIKSLPCFEQ-EGMIWI 318 (502)
Q Consensus 289 --G~cv~vP~~~~~~~~L~~~pV~e~-~G~IwV 318 (502)
|+++..|. ..+|++|++++. +|.||.
T Consensus 87 tgG~~~~gP~----~~~L~~y~v~v~~~G~V~~ 115 (129)
T TIGR02694 87 KGGQQVWGQA----TQNLPQIVLRVADNGDIFA 115 (129)
T ss_pred CCCcEECCCC----CCCCCeeEEEEECCCeEEE
Confidence 69998775 357999999997 599994
No 41
>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.59 E-value=6.1e-15 Score=133.06 Aligned_cols=92 Identities=21% Similarity=0.321 Sum_probs=81.1
Q ss_pred ecCCCCCCCceeEeeCCeeEEEEEcC----------------------------CCceEEEeecCCCCCCCCCCCCccce
Q 010738 223 FSTDLKDDTMVPFDCFEEPWVIFRGK----------------------------DGIPGCVQNTCAHRACPLHLGSVNEG 274 (502)
Q Consensus 223 ~~seL~~g~~~~~~l~G~~IVV~R~~----------------------------dG~v~A~~N~CpHRGa~Ls~G~v~~~ 274 (502)
..++|++|+.+.+.+.|.+|+|+|.. +|+++|+.+.|||.||.+..+.+.++
T Consensus 5 dl~~l~~G~~~~v~w~Gkpv~I~~rt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~CtH~gc~~~~~~~~~~ 84 (126)
T cd03470 5 DLSKIEEGQLITVEWRGKPVFIRRRTPEEIAEAKAVDLSLLDDPDPAANRVRSGKPEWLVVIGICTHLGCVPTYRAGDYG 84 (126)
T ss_pred EhhhCCCCCEEEEEECCeEEEEEECCHHHHhhhhhcchhhcCCccccccccccCCCcEEEEeCcCCCCCCeeccccCCCC
Confidence 46889999999999999999999953 67999999999999999988766778
Q ss_pred eeeeeecceEEcCCCCcccCCCcccccccccccceEEee-ceEEE
Q 010738 275 RIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQE-GMIWI 318 (502)
Q Consensus 275 ~IvCPYHGW~FdldG~cv~vP~~~~~~~~L~~~pV~e~~-G~IwV 318 (502)
.|.||+|||+||++|+.+..|. +.+|+.||++..+ +.|+|
T Consensus 85 ~~~CPcHgs~Fdl~G~~~~gPa----~~~L~~~p~~~~~~~~l~i 125 (126)
T cd03470 85 GFFCPCHGSHYDASGRIRKGPA----PLNLEVPPYKFLSDTTIVI 125 (126)
T ss_pred EEEecCcCCEECCCCeEecCCC----CCCCCeeeEEEecCCEEEe
Confidence 9999999999999999998876 4589999999776 67765
No 42
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.
Probab=99.58 E-value=3.2e-15 Score=130.83 Aligned_cols=72 Identities=15% Similarity=0.335 Sum_probs=65.3
Q ss_pred cCCCCCCCceeEee-CCeeEEEEEcCCCceEEEeecCCCCCCCCCCC--CccceeeeeeecceEEcC-CCCcccCCC
Q 010738 224 STDLKDDTMVPFDC-FEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG--SVNEGRIQCPYHGWEYST-DGKCEKMPS 296 (502)
Q Consensus 224 ~seL~~g~~~~~~l-~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G--~v~~~~IvCPYHGW~Fdl-dG~cv~vP~ 296 (502)
..+|++|..+.+.+ .|.+|+|+|. +|+++|++|+|||+|++|+.| .++++.|+||+|+|+||+ +|+++.-|.
T Consensus 14 l~eL~~G~~~~v~v~~g~~I~V~~~-~G~~~A~~n~CpH~g~pL~~g~g~~~g~~V~CP~Hg~~FDLrTG~~~~~p~ 89 (107)
T cd03473 14 VANLKEGINFFRNKEDGKKYIIYKS-KSELKACKNQCKHQGGLFIKDIEDLDGRTVRCTKHNWKLDVSTMKYVNPPD 89 (107)
T ss_pred HhcCCCCceEEEEecCCcEEEEEEE-CCEEEEEcCCCCCCCccccCCcceEeCCEEEeCCCCCEEEcCCCCCccCCc
Confidence 47899999999999 9999999995 899999999999999999984 578889999999999996 899988665
No 43
>PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional
Probab=99.45 E-value=3.6e-13 Score=128.28 Aligned_cols=87 Identities=21% Similarity=0.442 Sum_probs=72.4
Q ss_pred CCCCceeEe-eCCee-EEEEEcCCCce--EEEeecCCCCCCCCCCCCccceeeeeeecceEEcCCCCcccCCCccccccc
Q 010738 228 KDDTMVPFD-CFEEP-WVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVK 303 (502)
Q Consensus 228 ~~g~~~~~~-l~G~~-IVV~R~~dG~v--~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~FdldG~cv~vP~~~~~~~~ 303 (502)
++|+...+. +.|.+ +++++ .+|++ +|+++.|||.||+|..+.. ++.|.||+|||+||.+|+.+..|. ...
T Consensus 73 ~~g~~~~v~~~~g~~~~lv~~-~~g~~~~~a~~~~CtH~gc~l~~~~~-~~~~~CP~Hgs~Fd~tG~~~~gPa----~~~ 146 (178)
T PRK13474 73 PAGDRSLVQGLKGDPTYLVVE-EDGTIASYGINAVCTHLGCVVPWNSG-ENKFQCPCHGSQYDATGKVVRGPA----PLS 146 (178)
T ss_pred CCCCcEEEEEcCCCeEEEEEe-CCCEEEEEEecCCCCCCCCccccccC-CCEEEecCcCCEECCCCCCccCCC----CCC
Confidence 667777665 66777 55555 58999 5779999999999998864 459999999999999999998886 358
Q ss_pred ccccceEEeeceEEEec
Q 010738 304 IKSLPCFEQEGMIWIWP 320 (502)
Q Consensus 304 L~~~pV~e~~G~IwV~l 320 (502)
|+.|++++++|.|+|.+
T Consensus 147 L~~y~v~v~~g~v~v~~ 163 (178)
T PRK13474 147 LALVHVTVEDDKVLFSP 163 (178)
T ss_pred CCeEeEEEECCEEEEEE
Confidence 99999999999999965
No 44
>TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix.
Probab=99.29 E-value=1.3e-11 Score=117.28 Aligned_cols=93 Identities=20% Similarity=0.261 Sum_probs=78.0
Q ss_pred ceEEeeecCCCCCCCceeEeeCCeeEEEEEcC----------------------------------CCceEEEeecCCCC
Q 010738 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK----------------------------------DGIPGCVQNTCAHR 262 (502)
Q Consensus 217 ~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~----------------------------------dG~v~A~~N~CpHR 262 (502)
.|..| ..++|++|+.+.+.+.|.+|+|+|.. ++++.|+.+.|||.
T Consensus 40 ~~~~v-~l~eL~pG~~~~v~~~GkpI~I~~~t~~~~~~~~~~~~~~l~Dp~~~~~~~~~~~~~r~~~~~~~a~~~~CtH~ 118 (174)
T TIGR01416 40 APTEV-DVSKIQPGQQLTVEWRGKPVFIRRRTKKEIDALKALDLGALKDPNSEAQQPDYARVKRSGKPEWLVVIGICTHL 118 (174)
T ss_pred CcEEE-EHHHCCCCCeEEEEECCeEEEEEeCCHHHhhhhhccchhhcCCCcccccCcchhhhhhccCCcEEEEEeccCCC
Confidence 46677 78999999999999999999999851 48999999999999
Q ss_pred CCCCCC-CCcc-ceeeeeeecceEEcCCCCcccCCCcccccccccccceEEeec
Q 010738 263 ACPLHL-GSVN-EGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEG 314 (502)
Q Consensus 263 Ga~Ls~-G~v~-~~~IvCPYHGW~FdldG~cv~vP~~~~~~~~L~~~pV~e~~G 314 (502)
||.+.+ +... .+.|.||+||++||.+|+.+..|. +.+|+.||++..++
T Consensus 119 Gc~~~~~~~~~~~~~~~CPcHgs~Fd~~G~~~~gpa----~~~L~~~~~~~~~~ 168 (174)
T TIGR01416 119 GCIPTYGPEEGDKGGFFCPCHGSHYDTAGRVRKGPA----PLNLPVPPYKFLSD 168 (174)
T ss_pred CCccccccCCCCCCEEEeCCCCCEECCCCcEecCCC----CCCCCCCCEEEcCC
Confidence 987754 3333 468999999999999999998877 45899999987654
No 45
>cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. SoxF is a subunit of the terminal oxidase supercomplex SoxM in the plasma membrane of Sulfolobus acidocaldarius that combines features of a cytochrome bc(1) complex and a cytochrome. The Rieske domain of SoxF has a 12 residue insertion which is not found in eukaryotic and bacterial Rieske proteins and is thought to influence the redox properties of the iron-sulfur cluster. SoxL is a Rieske protein which may be part of an archaeal bc-complex homologue whose physiological function is still unknown. SoxL has two features not seen in other Rieske proteins; (i) a significantly greater distance between the two cluster-binding sites and (ii) an unexpected Pro - Asp substitution at one of the cluster binding sites. SoxF and SoxL are found in archaea and in bacteria.
Probab=98.97 E-value=2e-09 Score=101.89 Aligned_cols=68 Identities=15% Similarity=0.199 Sum_probs=53.6
Q ss_pred CCCceEEEeecCCCCCCCCCC---------------CCccceeeeeeecceEEcC-CC-CcccCCCcccccccccccceE
Q 010738 248 KDGIPGCVQNTCAHRACPLHL---------------GSVNEGRIQCPYHGWEYST-DG-KCEKMPSTQLRNVKIKSLPCF 310 (502)
Q Consensus 248 ~dG~v~A~~N~CpHRGa~Ls~---------------G~v~~~~IvCPYHGW~Fdl-dG-~cv~vP~~~~~~~~L~~~pV~ 310 (502)
.+|+++|+++.|+|+||+|.. |...++.|.||+|||+||. +| ..+..|.. ..|+.|.++
T Consensus 73 p~g~IvA~S~iCpHlGc~l~~~~~y~~~~~~~~~~~g~~~~~~i~CPcHgS~FD~~tGg~v~~GPA~----~pLp~~~L~ 148 (171)
T cd03475 73 PNKSIVAFSAICQHLGCQPPPIVSYPSYYPPDKAPGLASKGAVIHCCCHGSTYDPYKGGVVLTGPAP----RPLPAVILE 148 (171)
T ss_pred CCCEEEEEeCcCCCCCCcccccccccccccccccccccccCCEEEcCCCCCEEeCCCCCeEcCCCCC----CCcCEeEEE
Confidence 478999999999999998763 3445789999999999997 45 55555653 578899988
Q ss_pred Eee--ceEEEe
Q 010738 311 EQE--GMIWIW 319 (502)
Q Consensus 311 e~~--G~IwV~ 319 (502)
..+ |.||+-
T Consensus 149 ~d~~~d~iyAv 159 (171)
T cd03475 149 YDSSTDDLYAV 159 (171)
T ss_pred EeCCCCcEEEE
Confidence 774 788873
No 46
>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion]
Probab=98.57 E-value=9.1e-08 Score=90.80 Aligned_cols=76 Identities=25% Similarity=0.423 Sum_probs=60.3
Q ss_pred CeeEEEEEcCCCceE-----EEeecCCCCCCCCCC-CCccceeeeeeecceEEcCCCCcccCCCcccccccccccceEEe
Q 010738 239 EEPWVIFRGKDGIPG-----CVQNTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQ 312 (502)
Q Consensus 239 G~~IVV~R~~dG~v~-----A~~N~CpHRGa~Ls~-G~v~~~~IvCPYHGW~FdldG~cv~vP~~~~~~~~L~~~pV~e~ 312 (502)
+.+...+++.++.+. |+...|.|.||.... +....+.|.||+||.+||.+|+.+..|. +..|+.+++...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~a~~~iCtHlGC~~~~~~~~~~~~~~CPCHGS~yd~~g~vv~GPA----~~~L~~~~~~~~ 158 (177)
T COG0723 83 GPKGGVTRDGDGGVGNKEIVAYSAICTHLGCTVPWNNAGAEGGFFCPCHGSRYDPDGGVVKGPA----PRPLPIPPLEYD 158 (177)
T ss_pred cccccceecccCCCCCccEEEEeeeccCCCCccCcccCCCCCeEEccCCCCeEcCCCCeeCCCC----CCCcCCceEEEe
Confidence 444555555555555 999999999999998 5667899999999999999999988887 457888888777
Q ss_pred eceEEE
Q 010738 313 EGMIWI 318 (502)
Q Consensus 313 ~G~IwV 318 (502)
.+-+++
T Consensus 159 ~d~~~~ 164 (177)
T COG0723 159 SDKLYL 164 (177)
T ss_pred CCceEE
Confidence 664443
No 47
>cd00680 RHO_alpha_C C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC), and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-te
Probab=98.48 E-value=2.1e-07 Score=85.74 Aligned_cols=33 Identities=30% Similarity=0.482 Sum_probs=29.9
Q ss_pred EEEEEecccchhccccCCCCCCCcCCcccccCC
Q 010738 344 IVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKG 376 (502)
Q Consensus 344 ~~~~v~~Nwk~~vEN~lD~yH~~~vH~~tfg~~ 376 (502)
..++++||||+++||++|+||++++|+++++..
T Consensus 3 ~~~~~~~NWK~~~En~~E~YH~~~~H~~~~~~~ 35 (188)
T cd00680 3 YEYEVDCNWKLAVENFLECYHVPTVHPDTLATG 35 (188)
T ss_pred eEEEeccCceEehhhccccccccccChhhhccc
Confidence 357899999999999999999999999998753
No 48
>cd08885 RHO_alpha_C_1 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=98.33 E-value=5.1e-07 Score=85.32 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=29.3
Q ss_pred EEEEEecccchhccccCCCCCCCcCCcccccC
Q 010738 344 IVMELPIEHGLLLDNLLDLAHAPFTHTSTFAK 375 (502)
Q Consensus 344 ~~~~v~~Nwk~~vEN~lD~yH~~~vH~~tfg~ 375 (502)
..++++||||+++|||+|+||++.+|++|++.
T Consensus 4 ~~~~~~~NWK~~~en~~E~YH~~~~H~~t~~~ 35 (190)
T cd08885 4 EEEVWDTNWKVLAENFMEGYHLPGLHPGTLHP 35 (190)
T ss_pred eeeeccCCchhhHhhcCccccccccccchhhc
Confidence 46789999999999999999999999998865
No 49
>cd08878 RHO_alpha_C_DMO-like C-terminal catalytic domain of the oxygenase alpha subunit of dicamba O-demethylase and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Stenotrophomonas maltophilia dicamba O-demethylase (DMO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components an
Probab=98.18 E-value=2.6e-06 Score=78.99 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=29.9
Q ss_pred EEEEecccchhccccCCCCCCCcCCcccccCCC
Q 010738 345 VMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGW 377 (502)
Q Consensus 345 ~~~v~~Nwk~~vEN~lD~yH~~~vH~~tfg~~~ 377 (502)
..+++|||++++||++|.+|++|||.+++|...
T Consensus 5 ~~~~~~n~~~~~EN~~D~~H~~fvH~~~~g~~~ 37 (196)
T cd08878 5 YRHIDCNWLQVVENLMDPSHVSFVHRSSIGRDA 37 (196)
T ss_pred cEEecCCcEEEehhCccccchhhhChhhhCccc
Confidence 357899999999999999999999999998753
No 50
>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2. This iron-sulfur protein is found in a contiguous genomic region with subunits of cytochrome b558/566 in several archaeal species, and appears to be part of a cytochrome bc1-analogous system.
Probab=98.11 E-value=4.4e-06 Score=85.75 Aligned_cols=69 Identities=14% Similarity=0.213 Sum_probs=52.5
Q ss_pred cCCCceEEEeecCCCCCCCCCCC----------------------------Ccc---ceeeeeeecceEEcCC--CCccc
Q 010738 247 GKDGIPGCVQNTCAHRACPLHLG----------------------------SVN---EGRIQCPYHGWEYSTD--GKCEK 293 (502)
Q Consensus 247 ~~dG~v~A~~N~CpHRGa~Ls~G----------------------------~v~---~~~IvCPYHGW~Fdld--G~cv~ 293 (502)
+.++.|.||+..|+|.||++..- ... .+.|.||+||.+||.+ |+.+.
T Consensus 173 Gp~~~IVAyS~IC~H~GC~~~~~~~Ypp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPCHgS~FD~~~gg~Vv~ 252 (321)
T TIGR03171 173 GPNKSIVAYSAICQHLGCTPPYIHFYPPNYVNPSQLTAPEPDQLTAQALLAAKQANVPALIHCDCHGSTYDPYHGAAVLT 252 (321)
T ss_pred CCCCCEEEEecccCcCCCCcchhhccCcccccccccccccccccchhhhhhhhccCCCCeEECCCCCCEECCCCCCceeC
Confidence 35688999999999999988321 011 2489999999999973 57888
Q ss_pred CCCcccccccccccceEEe--eceEEEe
Q 010738 294 MPSTQLRNVKIKSLPCFEQ--EGMIWIW 319 (502)
Q Consensus 294 vP~~~~~~~~L~~~pV~e~--~G~IwV~ 319 (502)
.|.. ..|..++++.. .|.|++-
T Consensus 253 GPA~----rpLp~i~l~~d~~~~~l~Av 276 (321)
T TIGR03171 253 GPTV----RPLPAVILEWDSSTDYLYAI 276 (321)
T ss_pred CCCC----CCCCcceEEEeCCCCeEEEE
Confidence 8884 46888888775 4777774
No 51
>cd08886 RHO_alpha_C_2 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=98.10 E-value=7.2e-06 Score=77.91 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=29.4
Q ss_pred EEEEEecccchhccccCCCCCCCcCCcccccC
Q 010738 344 IVMELPIEHGLLLDNLLDLAHAPFTHTSTFAK 375 (502)
Q Consensus 344 ~~~~v~~Nwk~~vEN~lD~yH~~~vH~~tfg~ 375 (502)
..++++||||+++|||+|+||++++|+++++.
T Consensus 4 ~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~ 35 (182)
T cd08886 4 LTSEIKANWKNVVDNYLECYHCHTAHPDFVDS 35 (182)
T ss_pred EEEEeecccEEEEecCCccccCcccChhHHhc
Confidence 46789999999999999999999999998855
No 52
>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion]
Probab=98.09 E-value=4.1e-06 Score=80.49 Aligned_cols=75 Identities=27% Similarity=0.392 Sum_probs=61.4
Q ss_pred ecCCCCCCCceeEeeCCeeEEEE--------------------------EcCCCceEEEeecCCCCCCCCCCCCccceee
Q 010738 223 FSTDLKDDTMVPFDCFEEPWVIF--------------------------RGKDGIPGCVQNTCAHRACPLHLGSVNEGRI 276 (502)
Q Consensus 223 ~~seL~~g~~~~~~l~G~~IVV~--------------------------R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~I 276 (502)
..++||+|.-.+++..|.|+++- |.++-+..++..+|.|.||-.....++.+..
T Consensus 91 ~l~~IPeGk~~~~kwrGkpvfirhrt~~ei~~~r~V~~s~lrDPq~d~~rvk~~ewl~~igVCThLGCVp~~~AGd~gg~ 170 (210)
T KOG1671|consen 91 KLSDIPEGKTVAFKWRGKPVFIRHRTKAEIEGERNVPQSTLRDPQDDVDRVKKPEWLVVIGVCTHLGCVPIANAGDYGGY 170 (210)
T ss_pred eeecCCCCCCcceeccCCceEEeeccccccccccccchhhccCchhhhhhccCcceEEEEeeeccccccccccccccCce
Confidence 35677777777788888887773 3334456899999999999988877778899
Q ss_pred eeeecceEEcCCCCcccCCCc
Q 010738 277 QCPYHGWEYSTDGKCEKMPST 297 (502)
Q Consensus 277 vCPYHGW~FdldG~cv~vP~~ 297 (502)
.||+||..||..|+....|+.
T Consensus 171 ~CPCHGSHYdasGRIrkGPAP 191 (210)
T KOG1671|consen 171 YCPCHGSHYDASGRIRKGPAP 191 (210)
T ss_pred ecccccccccccCceecCCCC
Confidence 999999999999999999874
No 53
>cd08883 RHO_alpha_C_CMO-like C-terminal catalytic domain of plant choline monooxygenase (CMO) and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of plant choline monooxygenase and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-
Probab=98.05 E-value=8e-06 Score=76.80 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=29.2
Q ss_pred EEEEEecccchhccccCCCCCCCcCCcccccC
Q 010738 344 IVMELPIEHGLLLDNLLDLAHAPFTHTSTFAK 375 (502)
Q Consensus 344 ~~~~v~~Nwk~~vEN~lD~yH~~~vH~~tfg~ 375 (502)
..+++++|||+++|||+|+||++++|+++++.
T Consensus 4 ~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~ 35 (175)
T cd08883 4 REYVIECNWKVYVDNYLEGYHVPFAHPGLAAV 35 (175)
T ss_pred EEeeeecCceEEehhcCCcccCcccchhHHhh
Confidence 45789999999999999999999999998855
No 54
>cd08887 RHO_alpha_C_3 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=97.87 E-value=4.1e-06 Score=78.34 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=29.5
Q ss_pred EEEEEecccchhccccCCCCCCCcCCcccccC
Q 010738 344 IVMELPIEHGLLLDNLLDLAHAPFTHTSTFAK 375 (502)
Q Consensus 344 ~~~~v~~Nwk~~vEN~lD~yH~~~vH~~tfg~ 375 (502)
.+++++||||+++||++|+||++++|+++++.
T Consensus 4 ~~~~~~~NWK~~~en~~E~YH~~~~H~~t~~~ 35 (185)
T cd08887 4 RRFDVAANWKLALDGFLEGYHFKVLHKNTIAP 35 (185)
T ss_pred eeeecCCCceEehhhcccccccchhchhhhcc
Confidence 46789999999999999999999999999865
No 55
>cd08884 RHO_alpha_C_GbcA-like C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components an
Probab=97.87 E-value=2.2e-05 Score=75.87 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=32.2
Q ss_pred CceEeEEEEEEEecccchhccccCCCCCCCcCCccccc
Q 010738 337 GFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA 374 (502)
Q Consensus 337 ~~~v~~~~~~~v~~Nwk~~vEN~lD~yH~~~vH~~tfg 374 (502)
.+++.....++++||||+++|||+|+||++++|+++..
T Consensus 7 ~~~~~~~~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~ 44 (205)
T cd08884 7 NLKVAHRISYEVAANWKLVVENYRECYHCAGVHPELAR 44 (205)
T ss_pred hcEEccceEEEEccCceehhHhCcccccCccccHHHHh
Confidence 34555566789999999999999999999999998663
No 56
>PF00848 Ring_hydroxyl_A: Ring hydroxylating alpha subunit (catalytic domain); InterPro: IPR015879 Aromatic ring hydroxylating dioxygenases are multicomponent 1,2-dioxygenase complexes that convert closed-ring structures to non-aromatic cis-diols []. The complex has both hydroxylase and electron transfer components. The hydroxylase component is itself composed of two subunits: an alpha-subunit of about 50 kDa, and a beta-subunit of about 20 kDa. The electron transfer component is either composed of two subunits: a ferredoxin and a ferredoxin reductase or by a single bifunctional ferredoxin/reductase subunit. Sequence analysis of hydroxylase subunits of ring hydroxylating systems (including toluene, benzene and napthalene 1,2-dioxygenases) suggests they are derived from a common ancestor []. The alpha-subunit binds both a Rieske-like 2Fe-2S cluster and an iron atom: conserved Cys and His residues in the N-terminal region may provide 2Fe-2S ligands, while conserved His and Tyr residues may coordinate the iron. The beta subunit may be responsible for the substrate specificity of the dioxygenase system [].; GO: 0005506 iron ion binding, 0016708 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of two atoms of oxygen into one donor, 0051537 2 iron, 2 sulfur cluster binding, 0019439 aromatic compound catabolic process, 0055114 oxidation-reduction process; PDB: 1WQL_A 3EN1_A 3EQQ_A 2CKF_A 2BMR_A 2BMQ_A 2BMO_A 2GBW_E 2GBX_C 2XRX_A ....
Probab=97.37 E-value=1.2e-05 Score=74.79 Aligned_cols=32 Identities=31% Similarity=0.395 Sum_probs=27.4
Q ss_pred EEEEecccchhccccCCCCCCCcCCcccccCC
Q 010738 345 VMELPIEHGLLLDNLLDLAHAPFTHTSTFAKG 376 (502)
Q Consensus 345 ~~~v~~Nwk~~vEN~lD~yH~~~vH~~tfg~~ 376 (502)
.++++||||+++||++|.||++++|+++++..
T Consensus 11 ~~~~~~NWK~~~EN~~e~YH~~~~H~~~~~~~ 42 (209)
T PF00848_consen 11 RYEVDCNWKLAVENFLEGYHVPFLHPSTLGFF 42 (209)
T ss_dssp HHHESS-HHHHHHHHHHCTTHHHHTHHHHHHH
T ss_pred EEEecccceEHHHhCcccccccccccchhhhh
Confidence 35689999999999999999999999987653
No 57
>cd08879 RHO_alpha_C_AntDO-like C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas resinovorans strain CA10 anthranilate 1,2-dioxygenase and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of anthranilate 1,2-dioxygenase (AntDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are
Probab=97.30 E-value=9e-05 Score=73.47 Aligned_cols=32 Identities=31% Similarity=0.263 Sum_probs=29.1
Q ss_pred EEEEEEecccchhccccCCCCCCCcCCccccc
Q 010738 343 EIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA 374 (502)
Q Consensus 343 ~~~~~v~~Nwk~~vEN~lD~yH~~~vH~~tfg 374 (502)
..++.++||||+++||+.|.||++++|.+++.
T Consensus 3 ~~~~~~~~nWK~~~en~~d~yH~~~~H~~~~~ 34 (237)
T cd08879 3 THRYRYRGNWKLQLENGTDGYHPPFVHASYVA 34 (237)
T ss_pred eeEEEeeceEEEEeeecCccccCccccHHHHH
Confidence 35678999999999999999999999998885
No 58
>cd08881 RHO_alpha_C_NDO-like C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). This domain binds non-heme Fe(II). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents form the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are th
Probab=97.16 E-value=0.00013 Score=71.23 Aligned_cols=34 Identities=24% Similarity=0.230 Sum_probs=30.6
Q ss_pred EEEEEEecccchhccccC-CCCCCCcCCcccccCC
Q 010738 343 EIVMELPIEHGLLLDNLL-DLAHAPFTHTSTFAKG 376 (502)
Q Consensus 343 ~~~~~v~~Nwk~~vEN~l-D~yH~~~vH~~tfg~~ 376 (502)
..++.++||||+++|||+ |.||++++|.+++..+
T Consensus 8 ~~~~~~~~NWK~~~en~~~d~yH~~~~H~~~~~~~ 42 (206)
T cd08881 8 PQKWVIKANWKLAAENFAGDGYHTGTTHASALEAG 42 (206)
T ss_pred cEEEEecCcceehhhccccccccchhhhHHHHHhh
Confidence 467899999999999999 9999999999888554
No 59
>cd08880 RHO_alpha_C_ahdA1c-like C-terminal catalytic domain of the large/alpha subunit (ahdA1c) of a ring-hydroxylating dioxygenase from Sphingomonas sp. strain P2 and related proteins. C-terminal catalytic domain of the large subunit (ahdA1c) of the AhdA3A4A2cA1c salicylate 1-hydroxylase complex from Sphingomonas sp. strain P2, and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). AhdA3A4A2cA1c is one of three known isofunctional salicylate 1-hydroxylase complexes in strain P2, involved in phenanthrene degradation, which catalyze the monooxygenation of salicylate, the metabolite of phenanthene degradation, to produce catechol. This complex prefers salicylate over other substituted salicylates; the other two salicylate 1-hydroxylases have different substrate preferences. RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative deg
Probab=96.94 E-value=0.0002 Score=70.41 Aligned_cols=33 Identities=27% Similarity=0.296 Sum_probs=30.0
Q ss_pred EEEEEEecccchhccccCCCCCCCcCCc--ccccC
Q 010738 343 EIVMELPIEHGLLLDNLLDLAHAPFTHT--STFAK 375 (502)
Q Consensus 343 ~~~~~v~~Nwk~~vEN~lD~yH~~~vH~--~tfg~ 375 (502)
..++.+++|||+++||+.|.||++.+|+ .|||.
T Consensus 3 ~~~~~~~~nwk~~~~~~~~~yh~~~~h~~~~t~g~ 37 (222)
T cd08880 3 YYRQRIPGNWKLYAENVKDPYHASLLHLFFVTFGL 37 (222)
T ss_pred ceeeecCCCcHHHHHhccCcchHHHHhhhheeeec
Confidence 4567899999999999999999999999 88876
No 60
>cd08882 RHO_alpha_C_MupW-like C-terminal catalytic domain of Pseudomonas fluorescens MupW and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas fluorescens MupW and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-l
Probab=96.89 E-value=0.00042 Score=69.14 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=27.3
Q ss_pred EEEEEecccchhccccCCCCCCCcCCcccc
Q 010738 344 IVMELPIEHGLLLDNLLDLAHAPFTHTSTF 373 (502)
Q Consensus 344 ~~~~v~~Nwk~~vEN~lD~yH~~~vH~~tf 373 (502)
....++||||.++|||+|.||++++|+...
T Consensus 4 ~~~~~~~NWK~~~en~~e~yH~~~~H~~~~ 33 (243)
T cd08882 4 VTKVLPCNWKVAQEAFNESYHVPTTHPQLL 33 (243)
T ss_pred EEEEecCCCeeeHHhcCCcccCcccchhHH
Confidence 457899999999999999999999999765
No 61
>PF11723 Aromatic_hydrox: Homotrimeric ring hydroxylase; InterPro: IPR021028 This entry represents the catalytic domain from a family of homotrimeric enzymes that hydroxylate aromatic compounds, including 2-oxo-1,2-dihydroquinoline 8-monooxygenase from Pseudomonas putida and carbazole 1,9a-dioxygenase from Janthinobacterium. The catalytic domain is found C-termnial to the iron-sulphur-binding Rieske domain and is composed of antiparallel beta sheets and alpha helices []. It is part of a much larger superfamily of lipid binding domains which form a common fold that works as a versatile scaffold for binding bulky ligands [].; PDB: 1Z03_D 1Z01_E 1Z02_F 2DE6_A 2DE7_C 1WW9_A 2DE5_C 3GKQ_F 3GCF_L.
Probab=94.83 E-value=0.018 Score=57.39 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=25.9
Q ss_pred CCceEeEEEEEEEecccchhccccCCCCCCCcCCcccc
Q 010738 336 SGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTF 373 (502)
Q Consensus 336 ~~~~v~~~~~~~v~~Nwk~~vEN~lD~yH~~~vH~~tf 373 (502)
++..+.+ ....+.|||.+.+||.+|..|+ |+|..+.
T Consensus 21 ~~~~~~g-~~~~~~~NWR~a~ENGfD~~H~-fiHk~s~ 56 (240)
T PF11723_consen 21 DDIVIFG-MHREINANWRLAAENGFDPGHI-FIHKDSI 56 (240)
T ss_dssp TTEEEEE-EEEEESS-HHHHHHHHT-TTGG-GGGTT-H
T ss_pred CcceEEe-eeeeccccchhhhhhCcCcceE-EEecCcc
Confidence 3444443 4568999999999999999998 9998553
No 62
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=94.28 E-value=0.022 Score=61.93 Aligned_cols=37 Identities=35% Similarity=0.818 Sum_probs=33.8
Q ss_pred CCCCCCCCCCccceeeeeeecceEEcC-CCCcccCCCc
Q 010738 261 HRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPST 297 (502)
Q Consensus 261 HRGa~Ls~G~v~~~~IvCPYHGW~Fdl-dG~cv~vP~~ 297 (502)
|.|+||..|-...+.++||+||..|+. +|....-|..
T Consensus 1 hygapl~~g~~s~g~v~cpwhgacfn~~~gdiedfP~~ 38 (478)
T KOG1336|consen 1 HYGAPLAKGVLSRGRVRCPWHGACFNLSTGDIEDFPGL 38 (478)
T ss_pred CCCcchhhccccCCcccccccceeecCCcCchhhCcCc
Confidence 899999999888899999999999996 8998888874
No 63
>PRK14127 cell division protein GpsB; Provisional
Probab=86.54 E-value=2 Score=38.29 Aligned_cols=42 Identities=31% Similarity=0.483 Sum_probs=22.0
Q ss_pred HHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 010738 105 KVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVA 149 (502)
Q Consensus 105 ~v~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~ 149 (502)
.|-+-|..+|.+|. +|-+|++.|++|+++...++--.++|++
T Consensus 27 EVD~FLd~V~~dye---~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 27 EVDKFLDDVIKDYE---AFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45666666666653 4444555555555555544444444443
No 64
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=75.06 E-value=17 Score=32.09 Aligned_cols=50 Identities=12% Similarity=0.014 Sum_probs=39.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHhhhhhc
Q 010738 119 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQ 168 (502)
Q Consensus 119 ~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~me~l~~~~~l~ 168 (502)
+...+++|++.+++|+++..++....++.|..-=+...++|++.|..|..
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~ 77 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGM 77 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCC
Confidence 46788889999999888888888888887773333368899999998855
No 65
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=72.55 E-value=21 Score=34.22 Aligned_cols=89 Identities=19% Similarity=0.265 Sum_probs=48.1
Q ss_pred eehhhHHHHhhhccceecc-------------ccchh---hHHHHHHHHHHHHhhChhhhhccchhhHHHHH----HHHH
Q 010738 72 LDVNQALEVARYDIQYCDW-------------RARQD---VLTIMLLHEKVVEVLNPLARDYKSIGTMKKEL----AELQ 131 (502)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~-------------~~~~d---~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~----~~lq 131 (502)
--+|+|.++++..+.-..+ .+..| |..+|++|+++.|+-+ +.+...+..|+.++ .++.
T Consensus 57 ~~iN~AY~tL~~p~~Ra~Yll~l~G~~~~~e~~~~~d~~fLme~mE~rE~lee~~~--~~d~~~L~~l~~e~~~~~~~~~ 134 (176)
T PRK03578 57 TRANEAYQTLRDPLKRARYLLHLRGVDVQAENNTAMPPAFLMQQMEWREAIEDARA--ARDVDALDALLAELRDERRERY 134 (176)
T ss_pred HHHHHHHHHhCChhhHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHHHHHH
Confidence 5789999998876632211 23345 5589999999998642 11222344333333 3333
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHh
Q 010738 132 EDLAQAHRQVHISEARVATALDKLAYMEALVN 163 (502)
Q Consensus 132 ~~~~~ah~~~~~s~~rv~~~l~~~~~me~l~~ 163 (502)
.++.++=..-+- =......+.|+.++.++..
T Consensus 135 ~~l~~~~~~~~d-~~~A~~~~~kL~y~~kl~~ 165 (176)
T PRK03578 135 AELGALLDSRGD-DQAAAEAVRQLMFIEKLAQ 165 (176)
T ss_pred HHHHHHHHcccc-HHHHHHHHHHHHHHHHHHH
Confidence 444433221010 1233466777777766544
No 66
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=69.43 E-value=14 Score=36.62 Aligned_cols=57 Identities=28% Similarity=0.434 Sum_probs=45.7
Q ss_pred hhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHhhhh
Q 010738 109 VLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRL 166 (502)
Q Consensus 109 ~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~me~l~~~~~ 166 (502)
.||.+-. |.+|+.||+++..+.+++..|+..+....+.-..+.++.+...+-+|+-|
T Consensus 24 ~lNd~TG-Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LL 80 (207)
T PF05546_consen 24 ALNDVTG-YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELL 80 (207)
T ss_pred HHHhccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666 99999999999999999999999988888888888888886655555433
No 67
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=68.86 E-value=14 Score=33.95 Aligned_cols=49 Identities=24% Similarity=0.333 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHhhChhhhhccc-hhhHHHHHHHHHHHHHHHHHHHHhh
Q 010738 96 VLTIMLLHEKVVEVLNPLARDYKS-IGTMKKELAELQEDLAQAHRQVHIS 144 (502)
Q Consensus 96 ~~~~~~~~~~v~~~l~~~~~~~~~-~~~~~~~~~~lq~~~~~ah~~~~~s 144 (502)
.-||..+|+||+....+--+-.|+ ..-||+-|..+||-|.+-..-+++.
T Consensus 69 i~til~LheKvl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L 118 (126)
T PF13118_consen 69 IGTILNLHEKVLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELL 118 (126)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 449999999999988875555544 3457777888888776655544444
No 68
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=65.90 E-value=24 Score=28.82 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=36.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhH-----HHHHHHHhhHHHHHHHHh
Q 010738 118 KSIGTMKKELAELQEDLAQAHRQVHISE-----ARVATALDKLAYMEALVN 163 (502)
Q Consensus 118 ~~~~~~~~~~~~lq~~~~~ah~~~~~s~-----~rv~~~l~~~~~me~l~~ 163 (502)
+|...|+++|.+|++||..-.-|-.+.+ +++...-..+|+|....+
T Consensus 12 ls~~eL~~~l~elk~eLf~LR~q~~~~~~l~n~~~ir~~Rk~IARi~Tvl~ 62 (69)
T PRK14549 12 MSPEEREEKLEELKLELLKERAQAAMGGAPENPGRIREIRRTIARILTIQR 62 (69)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999998777776 466666666676665554
No 69
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=64.26 E-value=34 Score=27.89 Aligned_cols=59 Identities=19% Similarity=0.211 Sum_probs=45.6
Q ss_pred HHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHH
Q 010738 102 LHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEA 160 (502)
Q Consensus 102 ~~~~v~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~me~ 160 (502)
+-+||...|.--.+=..=...|+.+++.++.|=++=..+......||+.-++++--||.
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 44555555544333333366899999999999999999999999999999999988763
No 70
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=62.87 E-value=52 Score=28.61 Aligned_cols=33 Identities=33% Similarity=0.405 Sum_probs=26.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 010738 117 YKSIGTMKKELAELQEDLAQAHRQVHISEARVA 149 (502)
Q Consensus 117 ~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~ 149 (502)
.||+.+|+.|++-|||++.++-.+..-=.+|+.
T Consensus 1 Kk~~s~I~~eIekLqe~lk~~e~keaERigr~A 33 (92)
T PF07820_consen 1 KKSSSKIREEIEKLQEQLKQAETKEAERIGRIA 33 (92)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999998887665555554
No 71
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=62.68 E-value=24 Score=27.56 Aligned_cols=43 Identities=21% Similarity=0.289 Sum_probs=30.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHHhhHHHHHH
Q 010738 118 KSIGTMKKELAELQEDLAQAHRQVHISEA----RVATALDKLAYMEA 160 (502)
Q Consensus 118 ~~~~~~~~~~~~lq~~~~~ah~~~~~s~~----rv~~~l~~~~~me~ 160 (502)
+|...|+++|.+|.+||.+.+-|-..++. ++...-..+|+|..
T Consensus 6 ls~~eL~~~l~~l~~elf~Lr~q~~~~~~~~~~~~~~~Rr~IARi~T 52 (57)
T cd00427 6 KSDEELQEKLDELKKELFNLRFQKATGQLENPHRIRKVRKDIARIKT 52 (57)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCcCcHHHHHHHHHHHHHHH
Confidence 57899999999999999999877776653 33444444444443
No 72
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=62.25 E-value=42 Score=32.18 Aligned_cols=91 Identities=18% Similarity=0.334 Sum_probs=58.4
Q ss_pred ceeehhhHHHHhhhccc---ee----------ccccchh--hH-HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHH
Q 010738 70 KFLDVNQALEVARYDIQ---YC----------DWRARQD--VL-TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQED 133 (502)
Q Consensus 70 ~~~~~~~~~~~~~~~~~---~~----------~~~~~~d--~~-~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~lq~~ 133 (502)
++--||+|.++++.++. |+ ++ +.+| +| .+|++|+++.|+-++- +-..+..+++++...+++
T Consensus 53 ~s~~IN~AY~~L~~p~~Ra~YlL~l~g~~~~~~~-~~~d~~fLme~me~rE~le~~~~~~--d~~~l~~~~~~i~~~~~~ 129 (173)
T PRK00294 53 RSASLNEAYQTLKSPPRRARYLLALSGHEVPLEV-TVHDPEFLLQQMQLREELEELQDEA--DLAGVATFKRRLKAAQDE 129 (173)
T ss_pred HHHHHHHHHHHhCChhhhHHHHHHhcCCCCCccc-CCCCHHHHHHHHHHHHHHHhhcccc--cHHHHHHHHHHHHHHHHH
Confidence 57789999999876652 22 22 3333 33 8999999999886652 334466677777777776
Q ss_pred HHHHHHHHHhh---HHHHHHHHhhHHHHHHHHh
Q 010738 134 LAQAHRQVHIS---EARVATALDKLAYMEALVN 163 (502)
Q Consensus 134 ~~~ah~~~~~s---~~rv~~~l~~~~~me~l~~ 163 (502)
+.++-.+.=-. =......+.|+.+|.++..
T Consensus 130 l~~~~~~~~~~~~~~~~A~~~v~kl~f~~kl~~ 162 (173)
T PRK00294 130 LNESFAACWDDAARREEAERLMRRMQFLDKLAQ 162 (173)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 66655542100 1344578888888877654
No 73
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=61.79 E-value=53 Score=30.17 Aligned_cols=87 Identities=15% Similarity=0.131 Sum_probs=60.8
Q ss_pred CCceeehhhHHHHhhhccceeccccchhhHHHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHH
Q 010738 68 KGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEAR 147 (502)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~r 147 (502)
.+...|+.+.+.++-.=| -+-+.|.-.-+.+.+++-..-+.+.+-...+..|+.+++.++.+++.++.+....++.
T Consensus 27 ~~~~~~~~~vin~i~~Ll----~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~ 102 (151)
T PF11559_consen 27 EESEDNDVRVINCIYDLL----QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQ 102 (151)
T ss_pred ccccccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666542211 1234566666777788878888888888888999999999999998888888777777
Q ss_pred HHHHHhhHHHH
Q 010738 148 VATALDKLAYM 158 (502)
Q Consensus 148 v~~~l~~~~~m 158 (502)
+.....++...
T Consensus 103 ~~~~~~~~k~~ 113 (151)
T PF11559_consen 103 LKSLEAKLKQE 113 (151)
T ss_pred HHHHHHHHHHH
Confidence 77655555544
No 74
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=60.65 E-value=27 Score=28.04 Aligned_cols=54 Identities=17% Similarity=0.333 Sum_probs=40.0
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHhhhhhc
Q 010738 115 RDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQ 168 (502)
Q Consensus 115 ~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~me~l~~~~~l~ 168 (502)
..+..+..++.|++.||.++++...+.-..+..++.--+-..++|+..|+++..
T Consensus 14 ~~~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm 67 (80)
T PF04977_consen 14 SGYSRYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGM 67 (80)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCC
Confidence 344556778888888888888888888777777765435667788888877743
No 75
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=60.28 E-value=6.5 Score=34.19 Aligned_cols=32 Identities=19% Similarity=0.461 Sum_probs=26.6
Q ss_pred HhhChhhhhccchhhHHHHHHHHHHHHHHHHH
Q 010738 108 EVLNPLARDYKSIGTMKKELAELQEDLAQAHR 139 (502)
Q Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~ 139 (502)
+++++..+-.++|.+|.|.+..||=||+.|+.
T Consensus 63 di~~eV~kTh~aIq~LdKtIS~LEMELAaARa 94 (95)
T PF13334_consen 63 DIMGEVSKTHEAIQSLDKTISSLEMELAAARA 94 (95)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35556666778899999999999999999975
No 76
>PRK14161 heat shock protein GrpE; Provisional
Probab=58.89 E-value=42 Score=32.44 Aligned_cols=54 Identities=30% Similarity=0.427 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHH
Q 010738 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (502)
Q Consensus 98 ~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~ 157 (502)
||...-+|.++++++. +..|++|+++|++.|.+++....+-..|..........
T Consensus 12 ~~~~~~~~~~~~~~~e------i~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~ 65 (178)
T PRK14161 12 TINDIAEEIVETANPE------ITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKD 65 (178)
T ss_pred HHHHHHHhhhhhhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777778889988774 56799999999999999999999999998866555444
No 77
>PRK09039 hypothetical protein; Validated
Probab=57.28 E-value=49 Score=35.05 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHH
Q 010738 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (502)
Q Consensus 120 ~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~m 158 (502)
|..|+.|++.|.+++++....+.-+|+|-...=.++..+
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443333333333
No 78
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=54.17 E-value=93 Score=25.25 Aligned_cols=62 Identities=31% Similarity=0.410 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHH----HHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHh
Q 010738 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAEL----QEDLAQAHRQVHISEARVATALDKLAYMEALVN 163 (502)
Q Consensus 98 ~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~l----q~~~~~ah~~~~~s~~rv~~~l~~~~~me~l~~ 163 (502)
-+|++|+.+.++-+. ++...+..|++++... ..++..+=..-... .....+.|+.|+.++.+
T Consensus 9 e~mE~rE~le~~~~~--~~~~~L~~l~~~~~~~~~~~~~~l~~~f~~~d~~--~A~~~~~kLky~~kl~~ 74 (78)
T PF07743_consen 9 EQMELREELEEAQNS--DDEAELEELKKEIEERIKELIKELAEAFDAKDWE--EAKEALRKLKYLQKLLE 74 (78)
T ss_dssp HHHHHHHHHHHHCCC--TSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHH--HHHHHHHHHHHHHHHHH
Confidence 799999999998654 2224455555544433 33333333222222 22356667777666544
No 79
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=53.30 E-value=73 Score=31.83 Aligned_cols=42 Identities=21% Similarity=0.376 Sum_probs=18.7
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHH
Q 010738 116 DYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (502)
Q Consensus 116 ~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~ 157 (502)
....+..++.++..+++.+.+-+.++.....++...-.++..
T Consensus 54 ~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~ 95 (302)
T PF10186_consen 54 QLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEE 95 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444333333
No 80
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=50.03 E-value=91 Score=25.79 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhHHH
Q 010738 127 LAELQEDLAQAHRQVHISEARVATALDKLAY 157 (502)
Q Consensus 127 ~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~ 157 (502)
-+.|++|..+-...-..-+.|+..-|+|+.+
T Consensus 41 ~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 41 NEELKEENEQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5555556666555555667778888887754
No 81
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=49.73 E-value=45 Score=35.14 Aligned_cols=50 Identities=22% Similarity=0.408 Sum_probs=43.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHhhhhhc
Q 010738 119 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQ 168 (502)
Q Consensus 119 ~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~me~l~~~~~l~ 168 (502)
.|.-|++++.+|+++|.+...+++++.+++.-+..|-+=||+|..+.=+.
T Consensus 176 ~v~LLqkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLddaniD 225 (323)
T PF08537_consen 176 RVILLQKKIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDDANID 225 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 36679999999999999999999999999999999999888887755443
No 82
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=49.70 E-value=86 Score=28.41 Aligned_cols=26 Identities=35% Similarity=0.440 Sum_probs=22.0
Q ss_pred CceeehhhHHHHhhhccceeccccch
Q 010738 69 GKFLDVNQALEVARYDIQYCDWRARQ 94 (502)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (502)
+.-+|+.++++-+.|||+.+|=+-++
T Consensus 26 ~~~ld~~~~l~kL~~~i~eld~~i~~ 51 (132)
T PF10392_consen 26 DSELDISTPLKKLNFDIQELDKRIRS 51 (132)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999966554
No 83
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=49.62 E-value=77 Score=32.69 Aligned_cols=40 Identities=30% Similarity=0.458 Sum_probs=35.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHH
Q 010738 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 159 (502)
Q Consensus 120 ~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~me 159 (502)
+...++||..++++|.++...+.-...|+...-+||++||
T Consensus 202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~ 241 (269)
T PF05278_consen 202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELE 241 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667889999999999999999999999998888888886
No 84
>PRK11637 AmiB activator; Provisional
Probab=49.38 E-value=69 Score=34.60 Aligned_cols=28 Identities=14% Similarity=0.256 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 010738 122 TMKKELAELQEDLAQAHRQVHISEARVA 149 (502)
Q Consensus 122 ~~~~~~~~lq~~~~~ah~~~~~s~~rv~ 149 (502)
+++++|..+++++.+...++...++++.
T Consensus 93 ~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 93 ETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 85
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=49.14 E-value=53 Score=27.00 Aligned_cols=50 Identities=18% Similarity=0.265 Sum_probs=34.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHhhhhhc
Q 010738 118 KSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQ 168 (502)
Q Consensus 118 ~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~me~l~~~~~l~ 168 (502)
..+..+..+++.++.++.+...+.-..+..++ .|+...++|++.++.|-.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~-~l~~~~rIe~~Ar~~lgM 73 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVA-ELSRHERIEKIAKKQLGM 73 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCHHHHHHHHHHhcCC
Confidence 34556777777777777777666666655555 566678888888888744
No 86
>PRK14156 heat shock protein GrpE; Provisional
Probab=45.60 E-value=85 Score=30.39 Aligned_cols=53 Identities=17% Similarity=0.260 Sum_probs=40.8
Q ss_pred HHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Q 010738 103 HEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLA 156 (502)
Q Consensus 103 ~~~v~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~ 156 (502)
.+.|.||..+-+-+.+ +..|+++++.|++.+.++.....+-..|.........
T Consensus 20 ~~~~~~~~~~~~~~~~-l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~ 72 (177)
T PRK14156 20 EETVEEVVEETPEKSE-LELANERADEFENKYLRAHAEMQNIQRRANEERQQLQ 72 (177)
T ss_pred HHHHHHHHhhcccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666655555555 7789999999999999999999999999886555443
No 87
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=45.44 E-value=1.2e+02 Score=27.92 Aligned_cols=58 Identities=14% Similarity=0.192 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Q 010738 99 IMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLA 156 (502)
Q Consensus 99 ~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~ 156 (502)
+..+.+++..+-+-+..-.+.+.++...+..+.+|+++....+....+.-++.+.|..
T Consensus 82 ~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke 139 (151)
T PF11559_consen 82 LEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKE 139 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444555566666666666666666666666666666666555
No 88
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=45.06 E-value=44 Score=33.94 Aligned_cols=59 Identities=27% Similarity=0.242 Sum_probs=48.2
Q ss_pred hhccceeccccchhhHHHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 010738 82 RYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVAT 150 (502)
Q Consensus 82 ~~~~~~~~~~~~~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~ 150 (502)
-.+.++-|=| |-.+|+|+||++..=.-++..|.||-+.+.+++.+-++|+.--+.++++
T Consensus 178 et~~~~PDP~----------AAa~vve~lnk~~~l~V~td~L~keAe~i~~~lekl~eq~~~~~~~~~~ 236 (244)
T COG1938 178 ETFGDRPDPR----------AAARVVEALNKMLGLNVDTDKLEKEAEEIEEQLEKLAEQLEKEEERVER 236 (244)
T ss_pred cccCCCCChH----------HHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3455566554 4568899999999999999999999999999999999998887777653
No 89
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=43.77 E-value=1.2e+02 Score=29.01 Aligned_cols=88 Identities=23% Similarity=0.347 Sum_probs=47.6
Q ss_pred eehhhHHHHhhhccc---ee-cc----------ccchhh--H-HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHH---
Q 010738 72 LDVNQALEVARYDIQ---YC-DW----------RARQDV--L-TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQ--- 131 (502)
Q Consensus 72 ~~~~~~~~~~~~~~~---~~-~~----------~~~~d~--~-~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~lq--- 131 (502)
--||+|..+++..+. |+ .- .+..|. | -+|++|++++|+ .-+++...+..|++++....
T Consensus 53 s~iN~AY~tLkdPl~RA~YLL~L~~g~~~~~e~~~~~d~~fLme~ME~rE~lee~--~~~~d~~~L~~l~~~v~~~~~~~ 130 (173)
T PRK01773 53 AEVNDALQILKDPILRAEAIIALNTGEQQNLEEKSTQDMAFLMQQMEWREQLEEI--EQQQDEDALTAFSKEIKQEQQAI 130 (173)
T ss_pred HHHHHHHHHHCChHHHHHHHHHhccCCCCCcccccCCCHHHHHHHHHHHHHHHhh--cccCCHHHHHHHHHHHHHHHHHH
Confidence 457888888777662 22 11 233332 2 788999999886 22445555655555544433
Q ss_pred -HHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHh
Q 010738 132 -EDLAQAHRQVHISEARVATALDKLAYMEALVN 163 (502)
Q Consensus 132 -~~~~~ah~~~~~s~~rv~~~l~~~~~me~l~~ 163 (502)
.++.+|=..-.. ......+.|+-++.++..
T Consensus 131 ~~~l~~~~~~~d~--~~A~~~~~rL~y~~kl~~ 161 (173)
T PRK01773 131 LTELSTALNSQQW--QQASQINDRLRFIKKLII 161 (173)
T ss_pred HHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHH
Confidence 333333222112 234456677777765544
No 90
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=43.08 E-value=62 Score=25.61 Aligned_cols=46 Identities=30% Similarity=0.372 Sum_probs=31.3
Q ss_pred HhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHhh
Q 010738 108 EVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVND 164 (502)
Q Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~me~l~~~ 164 (502)
|.=|.+.+=-.+++|+|+|+.+|.+++.+- ..+.+++-.|.+++-+
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i-----------~envk~ll~lYE~Vs~ 49 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKI-----------EENVKDLLSLYEVVSN 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHc
Confidence 344555555667889999988888877654 4556777777776643
No 91
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=42.28 E-value=1.4e+02 Score=27.81 Aligned_cols=47 Identities=11% Similarity=0.102 Sum_probs=34.4
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHH
Q 010738 114 ARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEA 160 (502)
Q Consensus 114 ~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~me~ 160 (502)
+-+.+++..|++|+...+..|.+-..+++.-++.+...-..+.+.++
T Consensus 37 ~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~ 83 (160)
T PF13094_consen 37 AANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEK 83 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567788888888888888888888888888777766655555443
No 92
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=41.94 E-value=43 Score=31.75 Aligned_cols=43 Identities=23% Similarity=0.340 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--HhhHHHHHHHH
Q 010738 120 IGTMKKELAELQEDLAQAHRQVHISEARVATA--LDKLAYMEALV 162 (502)
Q Consensus 120 ~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~--l~~~~~me~l~ 162 (502)
...|++||+.|+++++.|..+=-+||+|=.+. -.|+.+|++..
T Consensus 36 ~~~L~~El~~L~~~i~~Ar~~GDlsEak~~~~~~e~rI~~L~~~L 80 (160)
T PRK06342 36 LKALEDQLAQARAAYEAAQAIEDVNERRRQMARPLRDLRYLAARR 80 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999998888888664433 24666666443
No 93
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=41.89 E-value=28 Score=30.62 Aligned_cols=47 Identities=21% Similarity=0.360 Sum_probs=37.7
Q ss_pred cchhhH--HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHH
Q 010738 92 ARQDVL--TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQV 141 (502)
Q Consensus 92 ~~~d~~--~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~ 141 (502)
-|.|+. .+.||+-.+ -+|.-.=+.-|.+|+.||..+|.||+.++.|+
T Consensus 53 ~R~~a~~Sl~yEA~~R~---~dPv~Gc~G~i~~L~~ql~~~~~el~~~~~~l 101 (101)
T PF03195_consen 53 QREDAMRSLVYEANARA---RDPVYGCVGIISQLQQQLQQLQAELALVRAQL 101 (101)
T ss_pred chhhHHHHHHHHHHhhc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 377777 555776554 57888888889999999999999999998764
No 94
>PRK04654 sec-independent translocase; Provisional
Probab=41.89 E-value=83 Score=31.38 Aligned_cols=52 Identities=19% Similarity=0.283 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 010738 99 IMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATA 151 (502)
Q Consensus 99 ~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~ 151 (502)
|-.+-+-+-.+.+.+.||.+ ...||++|.++++++..+..++..+...+.++
T Consensus 36 irk~R~~~~~vk~El~~El~-~~ELrk~l~~~~~~i~~~~~~lk~~~~el~q~ 87 (214)
T PRK04654 36 VRRARMQWDSVKQELERELE-AEELKRSLQDVQASLREAEDQLRNTQQQVEQG 87 (214)
T ss_pred HHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555667778888888877 67888888888888888888888887777644
No 95
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=38.99 E-value=1e+02 Score=24.14 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=31.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHHhhHHHHHHHH
Q 010738 118 KSIGTMKKELAELQEDLAQAHRQVHISEA----RVATALDKLAYMEALV 162 (502)
Q Consensus 118 ~~~~~~~~~~~~lq~~~~~ah~~~~~s~~----rv~~~l~~~~~me~l~ 162 (502)
+|...|+++|.+|.+||.+-.-|..+.+. ++...-...|++....
T Consensus 7 ls~~eL~~~l~elk~eL~~Lr~q~~~~~l~n~~~ir~~Rr~IARi~Tvl 55 (58)
T PF00831_consen 7 LSDEELQEKLEELKKELFNLRFQKATGQLENPHRIREIRRDIARILTVL 55 (58)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 56889999999999999998888776543 3334444445444433
No 96
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=38.90 E-value=1.1e+02 Score=24.65 Aligned_cols=47 Identities=17% Similarity=0.257 Sum_probs=30.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHHhhHHHHHHHHh
Q 010738 117 YKSIGTMKKELAELQEDLAQAHRQVHISEA----RVATALDKLAYMEALVN 163 (502)
Q Consensus 117 ~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~----rv~~~l~~~~~me~l~~ 163 (502)
.+|...|.++|.+|++||.+-.-|-.+.+. ++...-..+|++....+
T Consensus 8 ~ls~~eL~~~l~~lkkeL~~lR~~~~~~~~~n~~~i~~~rk~IARi~Tvl~ 58 (66)
T PRK00306 8 ELSVEELNEKLLELKKELFNLRFQKATGQLENTHRLREVRRDIARIKTVLR 58 (66)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999887765544432 33344444555544444
No 97
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=38.36 E-value=61 Score=29.24 Aligned_cols=49 Identities=12% Similarity=0.282 Sum_probs=31.3
Q ss_pred hhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHH
Q 010738 112 PLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEA 160 (502)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~me~ 160 (502)
.|...-.+|..|+..|.++++++...+..+...+..|+..|..+..+.+
T Consensus 63 ~L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~~~l~~ 111 (133)
T PF06148_consen 63 NLVGMDEKIEELRKPLSQFREEVESVRDELDNTQEEIEDKLEERKELRE 111 (133)
T ss_dssp -----------HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455677888899999999999988888888889888888777543
No 98
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=37.81 E-value=1.5e+02 Score=26.00 Aligned_cols=66 Identities=12% Similarity=0.131 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHh
Q 010738 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVN 163 (502)
Q Consensus 98 ~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~me~l~~ 163 (502)
.|.+-..|-+.++.-...|.+..-...++|..|+.++...+....-.+..|..-..=-.+|+.++.
T Consensus 54 flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL~~v~~ 119 (126)
T PF13863_consen 54 FLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYKKYEEFLEKVVP 119 (126)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455778888999999999999999999999999999999999999888888877666666666543
No 99
>PRK00461 rpmC 50S ribosomal protein L29; Reviewed
Probab=37.75 E-value=1.2e+02 Score=26.04 Aligned_cols=51 Identities=20% Similarity=0.303 Sum_probs=37.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHhhHHHHHHHHhhhhhc
Q 010738 118 KSIGTMKKELAELQEDLAQAHRQVHISE----ARVATALDKLAYMEALVNDRLLQ 168 (502)
Q Consensus 118 ~~~~~~~~~~~~lq~~~~~ah~~~~~s~----~rv~~~l~~~~~me~l~~~~~l~ 168 (502)
+|...|+++|.+|++||.+-.-|-.+.+ +++...-..+|+|..+.+.+-++
T Consensus 8 lS~eEL~e~L~elkkELf~LR~q~atgql~n~~~ir~iRR~IARilTvl~Ek~~~ 62 (87)
T PRK00461 8 KSVEELEKLVIELKAELFTLRFKNATGSLDQTHKIKEIRKDIARILTILNERELE 62 (87)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999988876655443 35556666777777766655544
No 100
>PRK09039 hypothetical protein; Validated
Probab=37.62 E-value=1.3e+02 Score=31.79 Aligned_cols=42 Identities=19% Similarity=0.347 Sum_probs=21.7
Q ss_pred hhhHHHHHHHHHHHHHHHH-------HHHHhhHHHHHHHHhh-HHHHHHH
Q 010738 120 IGTMKKELAELQEDLAQAH-------RQVHISEARVATALDK-LAYMEAL 161 (502)
Q Consensus 120 ~~~~~~~~~~lq~~~~~ah-------~~~~~s~~rv~~~l~~-~~~me~l 161 (502)
|..||+||+.||++|..+. .|+...++++..+|.+ ..+|+..
T Consensus 146 I~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~ 195 (343)
T PRK09039 146 IAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRY 195 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555566665555555444 4444455555555532 4444443
No 101
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=37.43 E-value=1.6e+02 Score=29.45 Aligned_cols=68 Identities=22% Similarity=0.187 Sum_probs=52.1
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHhhhhhc
Q 010738 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQ 168 (502)
Q Consensus 101 ~~~~~v~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~me~l~~~~~l~ 168 (502)
.+|+++.+.=+|.--=.-.|..++++|..+...++++..+.+.+|.++.........+++-....|..
T Consensus 14 ~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~ 81 (225)
T COG1842 14 NINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQA 81 (225)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 56777777777763333348999999999999999999999999999998888777776444444433
No 102
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=36.81 E-value=1.1e+02 Score=34.82 Aligned_cols=59 Identities=22% Similarity=0.344 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Q 010738 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLA 156 (502)
Q Consensus 98 ~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~ 156 (502)
.+.+.++|+.+-|+-|-----+.+.|+++++.|+++|.+|=.+++.++......|.+..
T Consensus 322 ~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~v 380 (557)
T COG0497 322 DLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKEV 380 (557)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577888888888887766778999999999999999999999888887777666644
No 103
>PF11572 DUF3234: Protein of unknown function (DUF3234); InterPro: IPR021628 This bacterial family of proteins has no known function. Some members in this family of proteins are annotated as TTHA0547 however this cannot be confirmed. ; PDB: 2Z0R_J.
Probab=36.61 E-value=9.9 Score=33.06 Aligned_cols=53 Identities=4% Similarity=0.079 Sum_probs=39.1
Q ss_pred ccccccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCC
Q 010738 211 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLH 267 (502)
Q Consensus 211 ~~~l~~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls 267 (502)
.+.+...||.+-. ++|+-..++.+|+.+..+-.......+|...-|++|+.++
T Consensus 2 ~~dl~g~WYVLe~----~pGEHLvlealgqrls~iWtS~~~A~~F~~~~p~~GM~V~ 54 (103)
T PF11572_consen 2 APDLSGTWYVLED----EPGEHLVLEALGQRLSGIWTSRELAQAFLARHPELGMRVS 54 (103)
T ss_dssp ---TSSSEEEEES----STT-BEEEEETTEEEEEEBSSHHHHHHHHHTSTSS--EEE
T ss_pred CCCcccceEEecC----CCCceeeHHHHhhhHHhheecHHHHHHHHHhCcccCcEee
Confidence 3456778998766 4789999999999999888776677889889999987754
No 104
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=36.31 E-value=1.4e+02 Score=31.99 Aligned_cols=75 Identities=19% Similarity=0.352 Sum_probs=37.4
Q ss_pred hhhccceeccccchhhH----------------HHHHHHHHHHHhhChhh-hhcc---chhhHHHHHHHHHHHHHHHHHH
Q 010738 81 ARYDIQYCDWRARQDVL----------------TIMLLHEKVVEVLNPLA-RDYK---SIGTMKKELAELQEDLAQAHRQ 140 (502)
Q Consensus 81 ~~~~~~~~~~~~~~d~~----------------~~~~~~~~v~~~l~~~~-~~~~---~~~~~~~~~~~lq~~~~~ah~~ 140 (502)
+|-|- -|||++-|-. .+.-+|..+-..|.-+. ||+. -...|..|...+|++|++++.+
T Consensus 211 ~~~d~--kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~ 288 (359)
T PF10498_consen 211 IRADA--KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEK 288 (359)
T ss_pred ccCCc--chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 46664 8999987754 11133333333333332 3332 1233444555555666666666
Q ss_pred HHhhHHHHHHHHhhHHH
Q 010738 141 VHISEARVATALDKLAY 157 (502)
Q Consensus 141 ~~~s~~rv~~~l~~~~~ 157 (502)
-......|+.--.-|++
T Consensus 289 y~~~s~~V~~~t~~L~~ 305 (359)
T PF10498_consen 289 YKQASEGVSERTRELAE 305 (359)
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 66555566544444444
No 105
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=36.05 E-value=1.2e+02 Score=31.57 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=10.3
Q ss_pred ceEEeeecCCCCCCCceeEeeCCe
Q 010738 217 FWFPVAFSTDLKDDTMVPFDCFEE 240 (502)
Q Consensus 217 ~W~~V~~~seL~~g~~~~~~l~G~ 240 (502)
.|-.+... |..+.+.+.+.
T Consensus 293 gw~~~~~~-----~~~l~~~~~~~ 311 (325)
T PF08317_consen 293 GWKIVSIS-----GSTLEFRYKDE 311 (325)
T ss_pred CcEEEEEe-----CCeEEEEEcCE
Confidence 56666654 44455555544
No 106
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=35.76 E-value=12 Score=41.76 Aligned_cols=46 Identities=17% Similarity=0.315 Sum_probs=0.0
Q ss_pred hhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHH
Q 010738 113 LARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (502)
Q Consensus 113 ~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~m 158 (502)
...-..++.-|+.||++|++++..-+..++.+.|.+=.|=.|+..|
T Consensus 490 ~~~t~~~~~pl~~~L~ele~~I~~~~~~i~~~ka~Il~Ne~~i~~~ 535 (539)
T PF10243_consen 490 QSITDEALEPLKAQLAELEQQIKDQQDKICAVKANILKNEEKIQKM 535 (539)
T ss_dssp ----------------------------------------------
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3334456788999999999999999999999999888777776653
No 107
>PF15155 MRFAP1: MORF4 family-associated protein1
Probab=35.44 E-value=79 Score=28.39 Aligned_cols=50 Identities=26% Similarity=0.288 Sum_probs=35.7
Q ss_pred HHHHHhhChhh----hhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHh
Q 010738 104 EKVVEVLNPLA----RDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVN 163 (502)
Q Consensus 104 ~~v~~~l~~~~----~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~me~l~~ 163 (502)
-.=||||.|.- ==.-.|..+|+++|.|..|-.+||-+ +..||=+|..|.-
T Consensus 12 peevevlepeedfeqfllPvi~e~RediAsL~Re~~RA~lR----------~R~KL~EmdnmLi 65 (127)
T PF15155_consen 12 PEEVEVLEPEEDFEQFLLPVIHEMREDIASLTREHGRAYLR----------NRSKLWEMDNMLI 65 (127)
T ss_pred chhhcccCchhhhhhhccchHHHHHHHHHHHHHHHhHHHHH----------hHHHHHHHHHHHH
Confidence 34578888865 12346889999999999999988865 4456666665543
No 108
>PF09740 DUF2043: Uncharacterized conserved protein (DUF2043); InterPro: IPR018610 This entry consists of uncharacterised proteins of unknown function. They contain three conserved cysteines and a {CP}{y/l}{HG} motif.
Probab=35.25 E-value=19 Score=32.28 Aligned_cols=36 Identities=33% Similarity=0.636 Sum_probs=22.3
Q ss_pred CceEEEeecCCCCCCCCCCCCc--cceeeeeeecceEEcCC
Q 010738 250 GIPGCVQNTCAHRACPLHLGSV--NEGRIQCPYHGWEYSTD 288 (502)
Q Consensus 250 G~v~A~~N~CpHRGa~Ls~G~v--~~~~IvCPYHGW~Fdld 288 (502)
|++--..-.|. +||-.|.. ..+.++||+||=--+.|
T Consensus 63 g~~e~v~~~Cr---APL~~G~LC~RrD~~kCPfHG~IIpRD 100 (110)
T PF09740_consen 63 GEFEPVPHACR---APLPNGGLCPRRDRKKCPFHGKIIPRD 100 (110)
T ss_pred CccCcCchhhc---CCCCCCCcCCccCcccCCCCCcccCCC
Confidence 44444444453 56655533 24578999999988754
No 109
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=35.22 E-value=2.7e+02 Score=24.56 Aligned_cols=65 Identities=20% Similarity=0.355 Sum_probs=45.2
Q ss_pred eeEEEEEcCCCceEEEeecCCCCCCCCCCCC---ccceeeeeeecceEEcC------CCCcccCCCcccccccccccceE
Q 010738 240 EPWVIFRGKDGIPGCVQNTCAHRACPLHLGS---VNEGRIQCPYHGWEYST------DGKCEKMPSTQLRNVKIKSLPCF 310 (502)
Q Consensus 240 ~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~---v~~~~IvCPYHGW~Fdl------dG~cv~vP~~~~~~~~L~~~pV~ 310 (502)
.++++++..||++++.-|.|-= +.+. .+++.++|-.-|-+|.. .|-|--+| ++-.
T Consensus 19 vrff~i~~~dg~~~va~daCei-----C~~~GY~q~g~~lvC~~C~~~~~~~~ig~~~GGCNP~P-----------~~~~ 82 (102)
T PF10080_consen 19 VRFFAIKKPDGSYRVAFDACEI-----CGPKGYYQEGDQLVCKNCGVRFNLPTIGGKSGGCNPIP-----------LPYT 82 (102)
T ss_pred EEEEEEECCCCCEEEEEEeccc-----cCCCceEEECCEEEEecCCCEEehhhcccccCCCCccC-----------CceE
Confidence 4578888899999998887753 3322 35789999999999984 34444333 2556
Q ss_pred EeeceEEEec
Q 010738 311 EQEGMIWIWP 320 (502)
Q Consensus 311 e~~G~IwV~l 320 (502)
+.+|.|-|..
T Consensus 83 ~~~~~I~I~~ 92 (102)
T PF10080_consen 83 VDGGNIIIDQ 92 (102)
T ss_pred ecCCeEEEeH
Confidence 6678887743
No 110
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=33.75 E-value=1.5e+02 Score=23.05 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=22.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhh
Q 010738 118 KSIGTMKKELAELQEDLAQAHRQVHIS 144 (502)
Q Consensus 118 ~~~~~~~~~~~~lq~~~~~ah~~~~~s 144 (502)
+|...|.++|++|.+||.+.+-|-...
T Consensus 5 ~s~~EL~~~l~~lr~eLf~Lr~~~~~~ 31 (55)
T TIGR00012 5 KSKEELAKKLDELKKELFELRFQKATG 31 (55)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 678999999999999999988664443
No 111
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=33.49 E-value=1.4e+02 Score=26.80 Aligned_cols=28 Identities=18% Similarity=0.383 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 010738 121 GTMKKELAELQEDLAQAHRQVHISEARV 148 (502)
Q Consensus 121 ~~~~~~~~~lq~~~~~ah~~~~~s~~rv 148 (502)
++|-.|+..|++++.+.+.....||.|.
T Consensus 4 a~~~~q~~~l~~~v~~lRed~r~SEdrs 31 (112)
T PF07439_consen 4 AGLHQQLGTLNAEVKELREDIRRSEDRS 31 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444443
No 112
>PRK13723 conjugal transfer pilus assembly protein TraH; Provisional
Probab=33.40 E-value=1.6e+02 Score=32.59 Aligned_cols=43 Identities=28% Similarity=0.545 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH------Hhh-HHHHHHHHhhhh
Q 010738 124 KKELAELQEDLAQAHRQVHISEARVATA------LDK-LAYMEALVNDRL 166 (502)
Q Consensus 124 ~~~~~~lq~~~~~ah~~~~~s~~rv~~~------l~~-~~~me~l~~~~~ 166 (502)
.+.+..++|+|.+|.+++...++++.+. ++| +.+||+.+..++
T Consensus 390 ~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~i~~~~~~~eqq~~~~~ 439 (451)
T PRK13723 390 EAVMDHLRENLNQAQRQIAAFQSQVQVQQDALLVVDRQMSYMRQQLSARM 439 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445556666666666665555555433 233 555565555544
No 113
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=33.08 E-value=98 Score=25.70 Aligned_cols=31 Identities=29% Similarity=0.351 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 010738 121 GTMKKELAELQEDLAQAHRQVHISEARVATAL 152 (502)
Q Consensus 121 ~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l 152 (502)
=+|||+|...+.||+.|=||- -.--||-.-|
T Consensus 25 f~LRk~l~~~rqELs~aLYq~-DAA~RViArl 55 (70)
T PF08606_consen 25 FTLRKQLDQTRQELSHALYQH-DAACRVIARL 55 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHH
Confidence 379999999999999999984 4445555433
No 114
>PRK10884 SH3 domain-containing protein; Provisional
Probab=32.06 E-value=1.4e+02 Score=29.50 Aligned_cols=56 Identities=13% Similarity=0.210 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHH-HHhhhhhcccccccc
Q 010738 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEA-LVNDRLLQDRHTSGT 175 (502)
Q Consensus 120 ~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~me~-l~~~~~l~~~~~a~~ 175 (502)
+...++++.+|++|.++.++++..+++.+...-.++..+++ ...+-|+.|+.++..
T Consensus 127 ~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~~~ 183 (206)
T PRK10884 127 VAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVAGI 183 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHH
Confidence 44455566667777777777777777777765555666553 444566667766654
No 115
>PRK11637 AmiB activator; Provisional
Probab=31.54 E-value=1.9e+02 Score=31.22 Aligned_cols=60 Identities=23% Similarity=0.303 Sum_probs=32.8
Q ss_pred HHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHh
Q 010738 104 EKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVN 163 (502)
Q Consensus 104 ~~v~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~me~l~~ 163 (502)
.+.-++.+.+..=...+..+.++|..+++++.+...++-..++.+...-.++...++...
T Consensus 68 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 68 QQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444344455556666666666666666666666666666666555554443
No 116
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=31.35 E-value=1.2e+02 Score=27.91 Aligned_cols=41 Identities=24% Similarity=0.301 Sum_probs=30.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHH
Q 010738 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEA 160 (502)
Q Consensus 120 ~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~me~ 160 (502)
+..+++|+.++++++++-+..+..-+..|+.--.|+.+||+
T Consensus 84 ~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 84 SKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45567777777777777777777777777777777777663
No 117
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=30.78 E-value=1.9e+02 Score=34.48 Aligned_cols=69 Identities=26% Similarity=0.397 Sum_probs=49.3
Q ss_pred CceeehhhHHHHhhhccceeccccchhhH-HHHHHHHHHHHhhChhhh-------hccchhhHHHHHHHHHHHHHHHHHH
Q 010738 69 GKFLDVNQALEVARYDIQYCDWRARQDVL-TIMLLHEKVVEVLNPLAR-------DYKSIGTMKKELAELQEDLAQAHRQ 140 (502)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~v~~~l~~~~~-------~~~~~~~~~~~~~~lq~~~~~ah~~ 140 (502)
-||=|+-+=+|..+.+|. |+- -+..++++|+++=+..-| ..+....||.||+-||.|+++.+..
T Consensus 445 ~K~~di~kQle~~~~s~~--------~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 445 RKYDDIQKQLESAEQSID--------DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHHHHHHhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777788777775 444 456788888887766655 2345778899999999999988887
Q ss_pred -HHhhH
Q 010738 141 -VHISE 145 (502)
Q Consensus 141 -~~~s~ 145 (502)
.|.+|
T Consensus 517 ~~~~~q 522 (980)
T KOG0980|consen 517 LSNLAQ 522 (980)
T ss_pred hhhHHH
Confidence 44443
No 118
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=30.25 E-value=2.6e+02 Score=27.89 Aligned_cols=45 Identities=27% Similarity=0.353 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHH
Q 010738 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVH 142 (502)
Q Consensus 98 ~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~ 142 (502)
.+..+.+++...-..+.+-.+.+...|++++++++++......+.
T Consensus 64 ~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 64 EIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455544444555555555555555555555555554444
No 119
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=29.66 E-value=2.9e+02 Score=24.95 Aligned_cols=49 Identities=22% Similarity=0.328 Sum_probs=25.0
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 010738 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVA 149 (502)
Q Consensus 101 ~~~~~v~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~ 149 (502)
++++|-..-|.-=|.+-+.+.+||+++..++.++.......-...+.+.
T Consensus 42 ~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~ 90 (132)
T PF07926_consen 42 EAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELE 90 (132)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444555556666666655555555555444444444
No 120
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=29.61 E-value=1.8e+02 Score=23.13 Aligned_cols=27 Identities=15% Similarity=0.442 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 010738 123 MKKELAELQEDLAQAHRQVHISEARVA 149 (502)
Q Consensus 123 ~~~~~~~lq~~~~~ah~~~~~s~~rv~ 149 (502)
+.+|++-|+.++.+...++..++++++
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~ 28 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLS 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 556777777777777777777777665
No 121
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=28.78 E-value=1.4e+02 Score=30.76 Aligned_cols=40 Identities=20% Similarity=0.422 Sum_probs=29.6
Q ss_pred HHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHh
Q 010738 104 EKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHI 143 (502)
Q Consensus 104 ~~v~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~ 143 (502)
....+..+-....++...+|++|-+.|.+|+++...+...
T Consensus 52 ~~p~~~~~~~~~~~~~~~~l~~EN~~Lr~e~~~l~~~~~~ 91 (283)
T TIGR00219 52 NRPREVFDGISENLKDVNNLEYENYKLRQELLKKNQQLEI 91 (283)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777888888899999999888877555444
No 122
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=28.33 E-value=2.7e+02 Score=26.47 Aligned_cols=90 Identities=14% Similarity=0.315 Sum_probs=46.7
Q ss_pred ceeehhhHHHHhhhccc---ee----cc------ccchh---hHHHHHHHHHHHHhhChhhhh-ccchhhHHHHHHHHHH
Q 010738 70 KFLDVNQALEVARYDIQ---YC----DW------RARQD---VLTIMLLHEKVVEVLNPLARD-YKSIGTMKKELAELQE 132 (502)
Q Consensus 70 ~~~~~~~~~~~~~~~~~---~~----~~------~~~~d---~~~~~~~~~~v~~~l~~~~~~-~~~~~~~~~~~~~lq~ 132 (502)
++-.+|+|.++++.++. |+ .. .+..| |..+|++|++++++-+. .+ -..+..|++++....+
T Consensus 50 ~s~~iN~AY~~L~dp~~Ra~Yll~l~g~~~~~~~~~~~d~efLme~me~rE~le~~~~~--~d~~~~l~~l~~~~~~~~~ 127 (171)
T PRK05014 50 QAATINDAYQTLKHPLKRAEYLLSLHGFDLAHEQHTVRDTAFLMEQMELREELEDIEQS--KDPEAALESFIKRVKKMFK 127 (171)
T ss_pred HHHHHHHHHHHHCChhHHHHHHHHhcCCccccccCCcCCHHHHHHHHHHHHHHHhhccc--cCHHHHHHHHHHHHHHHHH
Confidence 56679999999876652 21 11 11112 23789999999877432 11 2224444444444333
Q ss_pred ----HHHHHHHHHHhhHHHHHHHHhhHHHHHHHHh
Q 010738 133 ----DLAQAHRQVHISEARVATALDKLAYMEALVN 163 (502)
Q Consensus 133 ----~~~~ah~~~~~s~~rv~~~l~~~~~me~l~~ 163 (502)
++.++=..-+. ......+.|+-++.++..
T Consensus 128 ~~~~~l~~~~~~~d~--~~A~~~~~~Lky~~kl~~ 160 (171)
T PRK05014 128 TRLQQMVEQLDNEAW--DAAADTVRKLKFLDKLRS 160 (171)
T ss_pred HHHHHHHHHHhhCCH--HHHHHHHHHHHHHHHHHH
Confidence 33333211111 233456677777765543
No 123
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=28.02 E-value=97 Score=26.99 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHH
Q 010738 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAH 138 (502)
Q Consensus 98 ~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah 138 (502)
++++.|.+.-|.||-=.|-+- |+=||+-|--||.++..-.
T Consensus 41 ~~EeF~~~Lq~~lns~~qP~l-vPFLK~slp~Lr~~l~~~~ 80 (92)
T smart00549 41 TAEEFTSRLQEALNSPLQPYL-IPFLKNSLPLLRRELLHCA 80 (92)
T ss_pred CHHHHHHHHHHHHcCCCCchh-HHHHHHhhHHHHHHHHHHH
Confidence 789999999999999999988 9999999999999887543
No 124
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=27.82 E-value=2.5e+02 Score=26.06 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHH--HHHhhHHHH
Q 010738 120 IGTMKKELAELQEDLAQAHRQVHISEARVA--TALDKLAYM 158 (502)
Q Consensus 120 ~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~--~~l~~~~~m 158 (502)
+..|..+|..++++|..+...+.-++.+++ .+|+|..+|
T Consensus 44 ~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~ 84 (143)
T PF12718_consen 44 NQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQL 84 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHH
Confidence 556666666666666666666666665554 245544443
No 125
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=26.91 E-value=1.6e+02 Score=23.63 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=19.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHH
Q 010738 117 YKSIGTMKKELAELQEDLAQAHRQVH 142 (502)
Q Consensus 117 ~~~~~~~~~~~~~lq~~~~~ah~~~~ 142 (502)
..||..|..-++-|+.|++++...+.
T Consensus 20 ~lSv~EL~~RIa~L~aEI~R~~~~~~ 45 (59)
T PF06698_consen 20 LLSVEELEERIALLEAEIARLEAAIA 45 (59)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888888888877665443
No 126
>PF04698 Rab_eff_C: Rab effector MyRIP/melanophilin C-terminus; InterPro: IPR006788 MOBP is abundantly expressed in central nervous system myelin, and shares several characteristics with myelin basic protein (MBP), in terms of regional distribution and function. MOBP has been shown to be essential for normal arrangement of the radial component in central nervous system myelin [, ].
Probab=26.65 E-value=87 Score=36.35 Aligned_cols=49 Identities=33% Similarity=0.455 Sum_probs=42.1
Q ss_pred hChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHH
Q 010738 110 LNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 159 (502)
Q Consensus 110 l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~me 159 (502)
|..-||-.. -||--.||.+|.++++.|-.|||.+|..||.+-+|++-|.
T Consensus 573 le~~a~~~~-~~t~d~el~~le~~va~aaa~vq~~e~~~s~i~~ri~al~ 621 (714)
T PF04698_consen 573 LEECARQIH-SGTTDSELSELEDQVASAAAQVQQAESEVSDIESRIAALS 621 (714)
T ss_pred HHHhhhccc-CCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 445566655 3688899999999999999999999999999999999864
No 127
>COG1422 Predicted membrane protein [Function unknown]
Probab=25.66 E-value=1e+02 Score=30.42 Aligned_cols=46 Identities=22% Similarity=0.332 Sum_probs=33.7
Q ss_pred HhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHH
Q 010738 108 EVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 159 (502)
Q Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~me 159 (502)
..+|.+--|++=.+.+||+.+++|+|..+|.+ ++.-.+|.|+.+++
T Consensus 62 ~i~~~~liD~ekm~~~qk~m~efq~e~~eA~~------~~d~~~lkkLq~~q 107 (201)
T COG1422 62 TILQKLLIDQEKMKELQKMMKEFQKEFREAQE------SGDMKKLKKLQEKQ 107 (201)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH------hCCHHHHHHHHHHH
Confidence 34556666777789999999999999988864 44556667766654
No 128
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=25.46 E-value=2.5e+02 Score=29.48 Aligned_cols=15 Identities=20% Similarity=0.173 Sum_probs=6.7
Q ss_pred hhHHHHhhhccceec
Q 010738 75 NQALEVARYDIQYCD 89 (502)
Q Consensus 75 ~~~~~~~~~~~~~~~ 89 (502)
+.-++.++.|-..++
T Consensus 150 ~~~~~~l~~D~~~L~ 164 (312)
T smart00787 150 DENLEGLKEDYKLLM 164 (312)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 129
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=25.38 E-value=1.5e+02 Score=29.95 Aligned_cols=64 Identities=17% Similarity=0.237 Sum_probs=45.3
Q ss_pred hhHHHHhhhccceeccccchhhHHHH-HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHH
Q 010738 75 NQALEVARYDIQYCDWRARQDVLTIM-LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAH 138 (502)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~v~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah 138 (502)
..-+|-+|.+|--++=-+|++.|.|. -+++-+-...-+.+...+.+..|++|=..|+++|++..
T Consensus 75 k~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~ 139 (232)
T KOG2483|consen 75 KDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDLSRENRKLKARLEQLS 139 (232)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34456677777777888888866554 34455555566777778888888888888888887654
No 130
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=25.22 E-value=69 Score=31.54 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Q 010738 122 TMKKELAELQEDLAQAHRQVHIS 144 (502)
Q Consensus 122 ~~~~~~~~lq~~~~~ah~~~~~s 144 (502)
.||+|||+|.++|+++.+....+
T Consensus 100 rLkrELa~Le~~l~~~~~~~~~~ 122 (195)
T PF12761_consen 100 RLKRELAELEEKLSKVEQAAESR 122 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 49999999999999999988763
No 131
>PRK10884 SH3 domain-containing protein; Provisional
Probab=25.18 E-value=3.2e+02 Score=26.99 Aligned_cols=46 Identities=17% Similarity=0.271 Sum_probs=32.9
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHH
Q 010738 116 DYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALV 162 (502)
Q Consensus 116 ~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~me~l~ 162 (502)
-.+.+..|++|.+.|++|++++..++-..++.. +++++-..|+=+.
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~-~~~~~~~~~~wf~ 175 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQL-DDKQRTIIMQWFM 175 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 334467799999999999999988888777664 4555566665333
No 132
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=25.06 E-value=1.3e+02 Score=31.64 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhH
Q 010738 122 TMKKELAELQEDLAQAHRQVHISE 145 (502)
Q Consensus 122 ~~~~~~~~lq~~~~~ah~~~~~s~ 145 (502)
.+..+|+.|+.++.++-.+.+..+
T Consensus 246 ~l~~~l~~l~~~~~~~~~e~~~l~ 269 (344)
T PF12777_consen 246 ELEEKLAALQKEYEEAQKEKQELE 269 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444433333333333
No 133
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=25.04 E-value=2.9e+02 Score=26.22 Aligned_cols=87 Identities=17% Similarity=0.288 Sum_probs=47.1
Q ss_pred eeehhhHHHHhhhcc---cee---------c--cccchh---hHHHHHHHHHHHHhhChhhhhccchhhHHHHHH----H
Q 010738 71 FLDVNQALEVARYDI---QYC---------D--WRARQD---VLTIMLLHEKVVEVLNPLARDYKSIGTMKKELA----E 129 (502)
Q Consensus 71 ~~~~~~~~~~~~~~~---~~~---------~--~~~~~d---~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~----~ 129 (502)
+--+|+|.++++.++ +|+ + -.+..| |..+|++++++.|.-+ ...+..|++++. +
T Consensus 50 s~~in~AY~~L~dp~~Ra~YlL~l~g~~~~~~~~~~~~d~~fLme~me~rE~le~~~~-----~~~L~~l~~~~~~~~~~ 124 (166)
T PRK01356 50 ASELNNAYSTLKDALKRAEYMLLLQNINLNDEKTRSLLSPLELSIFWDEMERIENTIL-----FSDLEKIKNKYELMYKN 124 (166)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHccCCCCCCccccccCCHHHHHHHHHHHHHHHcCCC-----HHHHHHHHHHHHHHHHH
Confidence 447888888876544 221 1 224444 3378899998876622 222445544443 4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHhh
Q 010738 130 LQEDLAQAHRQVHISEARVATALDKLAYMEALVND 164 (502)
Q Consensus 130 lq~~~~~ah~~~~~s~~rv~~~l~~~~~me~l~~~ 164 (502)
+.+++.+|=..-.. ......+.|+-+++++.+.
T Consensus 125 ~~~~l~~~f~~~d~--~~A~~~~~~L~y~~kl~~~ 157 (166)
T PRK01356 125 EIDSLKQAFEEQNL--SDATIKTSKLKYIGTLLNK 157 (166)
T ss_pred HHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHHH
Confidence 44444444322122 3444667788887766553
No 134
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=24.90 E-value=3.3e+02 Score=25.82 Aligned_cols=64 Identities=27% Similarity=0.307 Sum_probs=46.1
Q ss_pred HHHHHHHHhhChhhhhccch-hhHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHhhHHHHHHHHhhhhhc
Q 010738 101 LLHEKVVEVLNPLARDYKSI-GTMKKELAELQEDLA----QAHRQVHISEARVATALDKLAYMEALVNDRLLQ 168 (502)
Q Consensus 101 ~~~~~v~~~l~~~~~~~~~~-~~~~~~~~~lq~~~~----~ah~~~~~s~~rv~~~l~~~~~me~l~~~~~l~ 168 (502)
++|..=|--|...+.+.||- -+|-.+|..|.+|-. +|-.|+|.+++.+.+.++-.. +.+.+||+
T Consensus 81 q~q~~rV~~Lqd~~~~hksa~~aLas~L~~Lr~q~e~e~keaa~qL~~~~a~L~~v~~ERD----~Lr~kLlq 149 (152)
T PF15186_consen 81 QLQARRVQWLQDQAEEHKSAAWALASELKRLREQREMERKEAAFQLQLTQAALQEVQKERD----LLRWKLLQ 149 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHh
Confidence 45566667777777777764 467888888888877 999999999887776655443 45666654
No 135
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=24.88 E-value=84 Score=28.00 Aligned_cols=39 Identities=10% Similarity=0.258 Sum_probs=19.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHH
Q 010738 119 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (502)
Q Consensus 119 ~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~ 157 (502)
+...|-+++.+|++++..+..+....+..+..-=+++..
T Consensus 74 ~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~ 112 (118)
T PF13815_consen 74 CQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKK 112 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555655555555555555444443333333
No 136
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=24.83 E-value=45 Score=30.83 Aligned_cols=30 Identities=23% Similarity=0.620 Sum_probs=25.2
Q ss_pred EEeecCCCCCCCCCCCCccceeeeeeecceEEc
Q 010738 254 CVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYS 286 (502)
Q Consensus 254 A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~Fd 286 (502)
-+...||--|+||-. .+|.+.||-||.++.
T Consensus 26 ML~~hCp~Cg~PLF~---KdG~v~CPvC~~~~~ 55 (131)
T COG1645 26 MLAKHCPKCGTPLFR---KDGEVFCPVCGYREV 55 (131)
T ss_pred HHHhhCcccCCccee---eCCeEECCCCCceEE
Confidence 345689999999987 678899999998776
No 137
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=24.29 E-value=1.5e+02 Score=23.71 Aligned_cols=32 Identities=31% Similarity=0.401 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 010738 120 IGTMKKELAELQEDLAQAHRQVHISEARVATA 151 (502)
Q Consensus 120 ~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~ 151 (502)
--|+...|+-|..+|.+|.++..-.|+|+.++
T Consensus 27 ~ltiEqRLa~LE~rL~~ae~ra~~ae~~~~~~ 58 (60)
T PF11471_consen 27 PLTIEQRLAALEQRLQAAEQRAQAAEARAKQA 58 (60)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34788899999999999999999888887653
No 138
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=24.07 E-value=3.9e+02 Score=26.25 Aligned_cols=59 Identities=19% Similarity=0.141 Sum_probs=46.0
Q ss_pred HHHHHHHHhhChh-hhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHH
Q 010738 101 LLHEKVVEVLNPL-ARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEA 160 (502)
Q Consensus 101 ~~~~~v~~~l~~~-~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~me~ 160 (502)
-+|+-+-.+=+|. +-++. |..|+++|......++++-.+-+..+.++...-.+...+++
T Consensus 14 ~~n~~~dk~EDP~~~l~q~-irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~ 73 (219)
T TIGR02977 14 NLNALLDKAEDPEKMIRLI-IQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQE 73 (219)
T ss_pred HHHHHHHhccCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556555566788 55555 89999999999999999999989998888877777777653
No 139
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=24.00 E-value=1.1e+02 Score=26.85 Aligned_cols=41 Identities=27% Similarity=0.380 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHH
Q 010738 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHR 139 (502)
Q Consensus 98 ~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~ 139 (502)
++++.|.|+-+.||--.|-+- |.=||+-|--||.++.....
T Consensus 42 ~~EeF~~~Lq~~lns~pqP~l-vPFLK~~lp~Lr~~l~~~~~ 82 (96)
T PF07531_consen 42 EAEEFTSKLQEELNSSPQPYL-VPFLKKSLPALRQELPNCAR 82 (96)
T ss_dssp -HHHHHHHHHHHCTSS--TTH-HHHHHHHHHHHHHCHCHHHH
T ss_pred CHHHHHHHHHHHhcCCCCcch-HHHHHHhHHHHHHHHHHHHH
Confidence 889999999999999999888 89999999999999876543
No 140
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=23.81 E-value=3e+02 Score=26.39 Aligned_cols=54 Identities=17% Similarity=0.202 Sum_probs=26.8
Q ss_pred HHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHH
Q 010738 105 KVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (502)
Q Consensus 105 ~v~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~m 158 (502)
.|..-|--+........++++|...|++|+.+-+.++-..++-+..-..++..+
T Consensus 84 ~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~ 137 (161)
T TIGR02894 84 DVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTI 137 (161)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555555555555555555555555555544444444333
No 141
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=23.77 E-value=2.4e+02 Score=26.13 Aligned_cols=44 Identities=18% Similarity=0.315 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHh
Q 010738 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVN 163 (502)
Q Consensus 120 ~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~me~l~~ 163 (502)
|..|.+.+..|..+|.++..+++-+...+...-++...+|.|-+
T Consensus 37 I~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~r 80 (143)
T PF12718_consen 37 ITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNR 80 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHh
Confidence 55666666666666666666666666666666555555554444
No 142
>PRK14147 heat shock protein GrpE; Provisional
Probab=23.53 E-value=2.3e+02 Score=27.23 Aligned_cols=38 Identities=13% Similarity=0.307 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHH
Q 010738 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (502)
Q Consensus 120 ~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~ 157 (502)
+..|++|+++|++.+.++......-..|..........
T Consensus 27 l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~ 64 (172)
T PRK14147 27 VESLRSEIALVKADALRERADLENQRKRIARDVEQARK 64 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888888888888766555444
No 143
>PRK09915 putative outer membrane efflux protein MdtP; Provisional
Probab=23.42 E-value=1.4e+02 Score=32.54 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=23.0
Q ss_pred HHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 010738 107 VEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVA 149 (502)
Q Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~ 149 (502)
.++....++-|-.+-..+++|+-+++.+....+.+++.++|++
T Consensus 184 ~~l~~~va~aY~~l~~~~~~l~l~~~~~~~~~~~~~~~~~r~~ 226 (488)
T PRK09915 184 LSLTTGVAQLYYSMQASYQMLDLLEQTRDVIDYAVKAHQSKVA 226 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555544
No 144
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=23.23 E-value=2.3e+02 Score=29.73 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=9.0
Q ss_pred chhhHHHHHHHHHHHHHHHHH
Q 010738 119 SIGTMKKELAELQEDLAQAHR 139 (502)
Q Consensus 119 ~~~~~~~~~~~lq~~~~~ah~ 139 (502)
.|...+++.+++++++++|+.
T Consensus 240 ~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 240 KIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444
No 145
>COG5570 Uncharacterized small protein [Function unknown]
Probab=22.58 E-value=1.2e+02 Score=23.98 Aligned_cols=42 Identities=24% Similarity=0.391 Sum_probs=33.3
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHH
Q 010738 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVH 142 (502)
Q Consensus 101 ~~~~~v~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~ 142 (502)
.+-+++-|.+|.=+-|-..|..||+.-..|.||+.+-..|.|
T Consensus 16 ~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~~~ 57 (57)
T COG5570 16 NLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQMH 57 (57)
T ss_pred hHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 456778888888888888888888888888888887766654
No 146
>COG3027 zapA Cell division protein ZapA (stimulator of FtsZ polymerization and Z-ring component) [Cell cycle control, cell division, chromosome partitioning]
Probab=22.43 E-value=1.6e+02 Score=26.03 Aligned_cols=32 Identities=28% Similarity=0.396 Sum_probs=21.3
Q ss_pred HHHHHHHHHH----HHHHHHHhhHHHHHHHHhhHHH
Q 010738 126 ELAELQEDLA----QAHRQVHISEARVATALDKLAY 157 (502)
Q Consensus 126 ~~~~lq~~~~----~ah~~~~~s~~rv~~~l~~~~~ 157 (502)
||..|++.+. ...++.+.++.++..+|.+.++
T Consensus 62 eL~~l~~k~~~~~~~~~q~i~~~~~~~~~Al~~~a~ 97 (105)
T COG3027 62 ELLKLKEKLRDIEASLEQRIRKLDQALENALTTLAQ 97 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444 5667777777888888877776
No 147
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=21.94 E-value=2.3e+02 Score=30.26 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHHHHHH-----------------HHHHHHhhHHHHHHHHhhHHHH
Q 010738 120 IGTMKKELAELQEDLAQ-----------------AHRQVHISEARVATALDKLAYM 158 (502)
Q Consensus 120 ~~~~~~~~~~lq~~~~~-----------------ah~~~~~s~~rv~~~l~~~~~m 158 (502)
|.|||..|.++.++|+. +|.-+|-+.+-|-+.|.-..+|
T Consensus 149 VDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRdel 204 (405)
T KOG2010|consen 149 VDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRDEL 204 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999988875 4445666666666666666665
No 148
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=21.89 E-value=5.8e+02 Score=23.04 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHH
Q 010738 127 LAELQEDLAQAHRQVHISEARVA 149 (502)
Q Consensus 127 ~~~lq~~~~~ah~~~~~s~~rv~ 149 (502)
+..|++.+.+....+...+.+|.
T Consensus 73 i~~L~~~I~~q~~~v~~~~~~ve 95 (147)
T PRK05689 73 LQQLEKAITQQRQQLTQWTQKVD 95 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444
No 149
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=21.77 E-value=4.5e+02 Score=23.83 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHh
Q 010738 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVN 163 (502)
Q Consensus 120 ~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~me~l~~ 163 (502)
+..|+++++.||..|..+=.=.=--.-+|+.--..+.+|++|-+
T Consensus 70 ~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 70 VEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYR 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544433332233344444444445554444
No 150
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.74 E-value=71 Score=30.59 Aligned_cols=20 Identities=15% Similarity=0.501 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 010738 121 GTMKKELAELQEDLAQAHRQ 140 (502)
Q Consensus 121 ~~~~~~~~~lq~~~~~ah~~ 140 (502)
..+++|++.|.+||.++...
T Consensus 157 ~~~~~ei~~lk~el~~~~~~ 176 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKE 176 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 34455555666665554333
No 151
>COG1392 Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]
Probab=21.66 E-value=4.3e+02 Score=26.26 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=51.3
Q ss_pred chhhHHHHHHHHHHHHhhChhhhhccc----hh-hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 010738 93 RQDVLTIMLLHEKVVEVLNPLARDYKS----IG-TMKKELAELQEDLAQAHRQVHISEARVATALDK 154 (502)
Q Consensus 93 ~~d~~~~~~~~~~v~~~l~~~~~~~~~----~~-~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~ 154 (502)
|-|+|.+....++|.......|.=..- |. .++.+...+=+...+|=.++|..-..+.+.+.+
T Consensus 79 R~Dil~L~~~~D~i~D~~ed~A~~l~l~~~~ip~~~~e~~~~~~~~~~~a~~~~~~ai~~L~~~~e~ 145 (217)
T COG1392 79 REDILELIESQDDIADAAEDAAKLLLLRKPFIPEELDEEFLRLVDLSLKAAELLAEAIELLEDLLES 145 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 789999999999999998887754433 33 899999999999999999999888888776666
No 152
>CHL00154 rpl29 ribosomal protein L29; Validated
Probab=21.45 E-value=3.8e+02 Score=21.80 Aligned_cols=26 Identities=8% Similarity=0.115 Sum_probs=20.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHh
Q 010738 118 KSIGTMKKELAELQEDLAQAHRQVHI 143 (502)
Q Consensus 118 ~~~~~~~~~~~~lq~~~~~ah~~~~~ 143 (502)
+|+..|+++|.+|++||-.-+-|-.+
T Consensus 12 ls~~eL~~~l~elk~elf~LRfq~at 37 (67)
T CHL00154 12 LTDSEISEEIIKTKKELFDLRLKKAT 37 (67)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67889999999999998877765433
No 153
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.35 E-value=1.9e+02 Score=29.47 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 010738 122 TMKKELAELQEDLAQAHRQVHISEARVAT 150 (502)
Q Consensus 122 ~~~~~~~~lq~~~~~ah~~~~~s~~rv~~ 150 (502)
.|++++-.+|+++.+-..++--.|.++.+
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s 82 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDS 82 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555554444443
No 154
>PRK14154 heat shock protein GrpE; Provisional
Probab=21.35 E-value=2.2e+02 Score=28.38 Aligned_cols=31 Identities=13% Similarity=0.262 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 010738 122 TMKKELAELQEDLAQAHRQVHISEARVATAL 152 (502)
Q Consensus 122 ~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l 152 (502)
.|++++++|++.|.++.....+-..|.....
T Consensus 63 ~le~e~~elkd~~lRl~ADfeNyRKR~~kE~ 93 (208)
T PRK14154 63 RMERKVDEYKTQYLRAQAEMDNLRKRIEREK 93 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555333
No 155
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=20.81 E-value=2.6e+02 Score=27.97 Aligned_cols=14 Identities=29% Similarity=0.254 Sum_probs=5.5
Q ss_pred HhhChhhhhccchh
Q 010738 108 EVLNPLARDYKSIG 121 (502)
Q Consensus 108 ~~l~~~~~~~~~~~ 121 (502)
+-|..+...-+++.
T Consensus 149 ~rl~~ll~ka~~~~ 162 (262)
T PF14257_consen 149 ERLLELLEKAKTVE 162 (262)
T ss_pred HHHHHHHHhcCCHH
Confidence 33444444333343
No 156
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=20.80 E-value=3.2e+02 Score=33.91 Aligned_cols=61 Identities=21% Similarity=0.228 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhChhhhh----ccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHH
Q 010738 99 IMLLHEKVVEVLNPLARD----YKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 159 (502)
Q Consensus 99 ~~~~~~~v~~~l~~~~~~----~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~me 159 (502)
+...-+.|+|.|..--+- .++|...-..+...|+-|+++++....+|+-++.+=+++.+||
T Consensus 1561 v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~ 1625 (1758)
T KOG0994|consen 1561 VKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELE 1625 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455677777543221 1223333345556677788888888888988888888887776
No 157
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=20.79 E-value=4.5e+02 Score=21.83 Aligned_cols=44 Identities=14% Similarity=0.265 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHhh
Q 010738 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVND 164 (502)
Q Consensus 121 ~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~me~l~~~ 164 (502)
..|...+..++.++..++.++...+..+..+..+..-||.|..+
T Consensus 55 ~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e~ 98 (123)
T PF02050_consen 55 SALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKLKER 98 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555444444444433
No 158
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=20.79 E-value=95 Score=23.27 Aligned_cols=23 Identities=30% Similarity=0.697 Sum_probs=18.7
Q ss_pred hhhccchhhHHHHHHHHHHHHHH
Q 010738 114 ARDYKSIGTMKKELAELQEDLAQ 136 (502)
Q Consensus 114 ~~~~~~~~~~~~~~~~lq~~~~~ 136 (502)
||-+-=|.+|++-|.+||+|+.+
T Consensus 18 ~~r~dEV~~L~~NL~EL~~e~~~ 40 (42)
T PF11464_consen 18 ARRFDEVATLEENLRELQDEIDE 40 (42)
T ss_dssp TT-HHHHHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHHh
Confidence 45566689999999999999975
No 159
>COG3566 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.74 E-value=1.6e+02 Score=31.26 Aligned_cols=37 Identities=19% Similarity=0.163 Sum_probs=30.1
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 010738 114 ARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVAT 150 (502)
Q Consensus 114 ~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~ 150 (502)
|.+.+++..+|+||..+.+||+|||.-.--..+.+.+
T Consensus 233 ak~~~~q~~~k~e~dakkaeL~Ka~aaleaana~~~d 269 (379)
T COG3566 233 AKLDSGQALTKEELDAKKAELSKALAALEAANAADED 269 (379)
T ss_pred cchhccchhhhHHHHHHHHHHHHHHHhHHHHHhccCC
Confidence 3577889999999999999999999877666555553
No 160
>PRK10869 recombination and repair protein; Provisional
Probab=20.56 E-value=2.4e+02 Score=31.78 Aligned_cols=47 Identities=11% Similarity=0.220 Sum_probs=25.3
Q ss_pred HhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 010738 108 EVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDK 154 (502)
Q Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~ 154 (502)
+-++.+..|...+....+.++.|++++.+++.++...-..+|....+
T Consensus 324 ~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~ 370 (553)
T PRK10869 324 QHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQR 370 (553)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555666666666666665555555544444
No 161
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=20.46 E-value=2.3e+02 Score=28.42 Aligned_cols=86 Identities=26% Similarity=0.310 Sum_probs=56.4
Q ss_pred hhhHHHHhhhccceeccccchhhHHHHH------------------HHHHHHHhh----Chhhhhc-cchhhHHHHHHHH
Q 010738 74 VNQALEVARYDIQYCDWRARQDVLTIML------------------LHEKVVEVL----NPLARDY-KSIGTMKKELAEL 130 (502)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------------~~~~v~~~l----~~~~~~~-~~~~~~~~~~~~l 130 (502)
++|+++=|..++. .+||-+.-++- +-.+....| ..|||+- ..+-.|.+++.++
T Consensus 29 l~Q~ird~~~~l~----~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~ 104 (225)
T COG1842 29 LEQAIRDMESELA----KARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKAL 104 (225)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777766664 45555554442 222222222 2345542 2356788899999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHh
Q 010738 131 QEDLAQAHRQVHISEARVATALDKLAYMEALVN 163 (502)
Q Consensus 131 q~~~~~ah~~~~~s~~rv~~~l~~~~~me~l~~ 163 (502)
+.++.+++.++--.+..+...-.|+.+++...+
T Consensus 105 ~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~ 137 (225)
T COG1842 105 EAELQQAEEQVEKLKKQLAALEQKIAELRAKKE 137 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888888888888888764433
No 162
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=20.28 E-value=5e+02 Score=27.19 Aligned_cols=67 Identities=33% Similarity=0.423 Sum_probs=45.5
Q ss_pred CCcCCceeehhhHHHHhhhccceeccccchhhHHHHHHHHHHHHhhChhh-hhccchhhHHHHHHHHHHHHHH-----HH
Q 010738 65 PQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLA-RDYKSIGTMKKELAELQEDLAQ-----AH 138 (502)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~l~~~~-~~~~~~~~~~~~~~~lq~~~~~-----ah 138 (502)
|..--+||-.-|--|| +|-+|-.|.-|.-|.|- ||.. |..||.||+-+||+--+ -.
T Consensus 53 PP~PEQYLTPLQQKEV-----------------~iRHLkakLkes~~~l~dRetE-I~eLksQL~RMrEDWIEEECHRVE 114 (305)
T PF15290_consen 53 PPNPEQYLTPLQQKEV-----------------CIRHLKAKLKESENRLHDRETE-IDELKSQLARMREDWIEEECHRVE 114 (305)
T ss_pred CCCHHHhcChHHHHHH-----------------HHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444567776665565 45566666666655553 5655 99999999999987543 34
Q ss_pred HHHHhhHHHHH
Q 010738 139 RQVHISEARVA 149 (502)
Q Consensus 139 ~~~~~s~~rv~ 149 (502)
.|+.+-|||-+
T Consensus 115 AQLALKEARkE 125 (305)
T PF15290_consen 115 AQLALKEARKE 125 (305)
T ss_pred HHHHHHHHHHH
Confidence 67777777765
No 163
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=20.26 E-value=3.7e+02 Score=24.69 Aligned_cols=48 Identities=19% Similarity=0.387 Sum_probs=32.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHhhhh
Q 010738 119 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRL 166 (502)
Q Consensus 119 ~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~me~l~~~~~ 166 (502)
++..+-|||..+.+.|+.|...+.-=..+|.-.||...++-+..++..
T Consensus 44 A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV 91 (126)
T PF07889_consen 44 AVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEV 91 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 456677888888888888877666555566666666666544444443
No 164
>PF06273 eIF-4B: Plant specific eukaryotic initiation factor 4B; InterPro: IPR010433 This family consists of several plant specific eukaryotic initiation factor 4B proteins.
Probab=20.24 E-value=3.1e+02 Score=30.65 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=19.7
Q ss_pred HHhhChhhhhccchhhHHHHHHHHHHHHHHHHH
Q 010738 107 VEVLNPLARDYKSIGTMKKELAELQEDLAQAHR 139 (502)
Q Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~ 139 (502)
..|-.|.-.| -..||++|..|+++|.+...
T Consensus 358 ~~~~r~e~~~---ek~lKeeI~~lk~~l~~~~~ 387 (492)
T PF06273_consen 358 RAVDRPETEE---EKFLKEEINALKERLEEEEA 387 (492)
T ss_pred cccccccccc---chhhhhhHHHHHHHHHhhhh
Confidence 3344453333 34788888888888877655
No 165
>TIGR02497 yscI_hrpB_dom type III secretion apparatus protein, YscI/HrpB, C-terminal domain. This model represents the conserved C-terminal domain of a protein conserved in across species in the bacterial type III secretion apparatus. This protein is designated YscI (Yop proteins translocation protein I) in Yersinia and HrpB (hypersensitivity response and pathogenicity protein B) in plant pathogens such as Pseudomonas syringae.
Probab=20.07 E-value=2.6e+02 Score=20.59 Aligned_cols=34 Identities=32% Similarity=0.492 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHhh---HHHHHHHHhhHHHH
Q 010738 125 KELAELQEDLAQAHRQVHIS---EARVATALDKLAYM 158 (502)
Q Consensus 125 ~~~~~lq~~~~~ah~~~~~s---~~rv~~~l~~~~~m 158 (502)
+++..+|..+.++--++-+. -++++++++||.-|
T Consensus 2 ~~ll~~Q~~l~~~tv~~dL~AK~ag~~sQsvnKL~~m 38 (39)
T TIGR02497 2 EDLLQMQRALMQATVQVDLTAKVAGAMSQAVNKLVNM 38 (39)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHcc
Confidence 46778888888888777665 45677999999865
Done!