Query 010738
Match_columns 502
No_of_seqs 431 out of 1931
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 13:13:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010738.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010738hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gke_A DDMC; rieske cluster, n 100.0 5.2E-38 1.8E-42 323.5 11.2 167 210-378 1-174 (349)
2 3n0q_A Putative aromatic-ring 100.0 8.9E-38 3E-42 328.6 9.4 180 177-375 18-213 (409)
3 3gzx_A Biphenyl dioxygenase su 100.0 4.3E-37 1.5E-41 327.5 11.2 181 177-376 34-246 (457)
4 3vca_A Ring-hydroxylating diox 100.0 3.1E-37 1.1E-41 324.8 9.1 179 178-375 21-215 (412)
5 2bmo_A Oxygenase-alpha NBDO; n 100.0 1.3E-36 4.4E-41 322.2 9.7 180 177-375 12-217 (447)
6 2zyl_A Possible oxidoreductase 100.0 1.2E-35 4E-40 310.0 14.1 173 200-373 9-190 (386)
7 2gbw_A Biphenyl 2,3-dioxygenas 100.0 2.9E-36 9.8E-41 320.2 9.0 180 177-375 14-218 (454)
8 2b1x_A Naphthalene dioxygenase 100.0 9.3E-36 3.2E-40 317.7 8.6 182 176-376 21-228 (470)
9 1z01_A 2-OXO-1,2-dihydroquinol 100.0 5.7E-35 1.9E-39 309.9 14.2 172 184-375 25-231 (446)
10 3gcf_A Terminal oxygenase comp 100.0 5.4E-35 1.8E-39 305.0 9.7 163 209-375 26-199 (394)
11 3gkq_A Terminal oxygenase comp 100.0 5.3E-34 1.8E-38 296.9 13.0 163 209-375 23-196 (389)
12 2de6_A Terminal oxygenase comp 100.0 4E-34 1.4E-38 298.4 11.9 163 209-375 20-193 (392)
13 1uli_A Biphenyl dioxygenase la 100.0 1.4E-34 4.9E-39 307.9 8.3 178 177-373 32-234 (460)
14 2qpz_A Naphthalene 1,2-dioxyge 99.9 2.5E-26 8.5E-31 196.7 10.7 101 216-321 2-103 (103)
15 1vm9_A Toluene-4-monooxygenase 99.9 2.7E-26 9.2E-31 199.2 11.0 104 217-325 1-106 (111)
16 2i7f_A Ferredoxin component of 99.9 1.7E-26 5.7E-31 199.6 9.6 102 217-323 3-106 (108)
17 1fqt_A Rieske-type ferredoxin 99.9 4.2E-26 1.4E-30 198.4 11.8 103 216-323 4-108 (112)
18 2de6_D Ferredoxin component of 99.9 2.7E-26 9.2E-31 201.1 8.5 104 215-323 2-107 (115)
19 3dqy_A Toluene 1,2-dioxygenase 99.9 3.5E-26 1.2E-30 196.9 8.3 101 217-322 1-102 (106)
20 2jo6_A Nitrite reductase [NAD( 99.9 2.8E-25 9.6E-30 193.3 11.1 100 217-321 6-112 (113)
21 2jza_A Nitrite reductase [NAD( 99.9 6.9E-25 2.4E-29 196.3 13.4 103 217-324 3-112 (130)
22 3c0d_A Putative nitrite reduct 99.9 2.1E-25 7.1E-30 196.5 9.8 103 216-323 4-112 (119)
23 3gce_A Ferredoxin component of 99.9 3.3E-25 1.1E-29 195.9 10.9 102 217-323 10-114 (121)
24 3d89_A Rieske domain-containin 99.9 3.1E-25 1E-29 204.3 6.6 109 215-324 14-137 (157)
25 4aiv_A Probable nitrite reduct 99.9 3.5E-24 1.2E-28 189.5 10.2 101 216-321 8-116 (119)
26 4aay_B AROB; oxidoreductase, r 99.9 8.1E-23 2.8E-27 192.3 7.8 142 154-319 3-161 (175)
27 1rie_A Rieske iron-sulfur prot 99.8 8.1E-21 2.8E-25 170.0 11.3 98 216-318 4-128 (129)
28 1rfs_A Rieske protein; iron-su 99.8 1E-20 3.5E-25 171.5 6.7 101 216-321 20-124 (139)
29 1g8k_B Arsenite oxidase; molyb 99.8 4.4E-20 1.5E-24 166.0 9.1 98 217-319 7-119 (133)
30 3azc_A Cytochrome B6-F complex 99.6 3.7E-20 1.3E-24 167.0 0.0 97 222-323 21-121 (133)
31 3cx5_E Cytochrome B-C1 complex 99.7 8E-18 2.7E-22 159.5 11.8 99 215-318 60-184 (185)
32 2qjy_C Ubiquinol-cytochrome C 99.7 2E-17 7E-22 156.9 11.5 96 218-318 49-186 (187)
33 1pp9_E Ubiquinol-cytochrome C 99.7 1.4E-17 4.7E-22 159.3 10.2 94 221-318 75-195 (196)
34 2nwf_A Ubiquinol-cytochrome C 99.7 2.2E-17 7.5E-22 150.2 9.6 93 222-318 6-140 (141)
35 1nyk_A Rieske iron-sulfur prot 99.7 1.7E-17 5.8E-22 154.6 8.2 99 222-325 25-151 (165)
36 1vf5_D Rieske iron-sulfur prot 99.7 1.1E-17 3.8E-22 157.4 2.7 92 224-320 70-164 (179)
37 1jm1_A Rieske iron-sulfur prot 99.6 2E-16 6.9E-21 152.1 -0.5 84 233-320 56-166 (204)
38 3pp5_A BRK1, protein brick1; t 76.1 6.3 0.00021 31.7 6.2 57 88-150 14-70 (73)
39 3bvo_A CO-chaperone protein HS 73.0 11 0.00037 35.7 8.2 86 70-162 92-197 (207)
40 3p8c_E Probable protein brick1 70.3 6.1 0.00021 31.9 4.8 57 88-150 14-70 (75)
41 3uo3_A J-type CO-chaperone JAC 69.0 20 0.00067 33.2 8.9 90 67-163 54-168 (181)
42 1fpo_A HSC20, chaperone protei 68.9 10 0.00035 34.7 6.8 90 69-162 49-158 (171)
43 3hho_A CO-chaperone protein HS 55.0 33 0.0011 31.3 7.6 91 69-163 52-163 (174)
44 3j21_W 50S ribosomal protein L 47.5 27 0.00092 27.7 4.9 48 118-165 9-61 (72)
45 3mq9_A Bone marrow stromal ant 46.7 52 0.0018 33.9 8.4 60 101-160 377-450 (471)
46 2jee_A YIIU; FTSZ, septum, coi 42.5 76 0.0026 25.9 6.9 55 100-154 9-77 (81)
47 3u1c_A Tropomyosin alpha-1 cha 42.3 74 0.0025 26.5 7.2 36 121-156 47-82 (101)
48 2yy0_A C-MYC-binding protein; 40.1 40 0.0014 25.2 4.6 30 120-149 21-50 (53)
49 3u59_A Tropomyosin beta chain; 39.5 86 0.003 26.0 7.2 37 120-156 46-82 (101)
50 4emc_A Monopolin complex subun 39.1 54 0.0019 30.7 6.3 56 102-157 18-73 (190)
51 3hnw_A Uncharacterized protein 38.2 1.1E+02 0.0039 26.9 8.1 49 112-160 83-131 (138)
52 3u1c_A Tropomyosin alpha-1 cha 37.1 1.1E+02 0.0037 25.5 7.4 54 101-157 37-96 (101)
53 2z5i_A TM, general control pro 36.7 41 0.0014 25.0 4.1 37 119-155 13-49 (52)
54 2l5g_A GPS2 protein, G protein 36.2 35 0.0012 23.9 3.3 29 114-142 4-32 (38)
55 3caz_A BAR protein; thermo-aci 35.5 9 0.00031 36.3 0.4 63 51-132 62-126 (294)
56 3m91_A Proteasome-associated A 34.4 1.3E+02 0.0044 22.3 6.5 39 124-162 8-46 (51)
57 4i0x_B ESAT-6-like protein MAB 33.4 79 0.0027 25.8 5.9 38 120-157 34-81 (103)
58 3azd_A Short alpha-tropomyosin 33.2 19 0.00065 25.0 1.7 26 119-144 5-30 (37)
59 3twe_A Alpha4H; unknown functi 32.8 57 0.002 20.7 3.6 21 121-141 4-24 (27)
60 3ghg_A Fibrinogen alpha chain; 32.4 64 0.0022 34.8 6.2 42 122-163 114-155 (562)
61 3a7o_A Autophagy protein 16; c 32.2 1.1E+02 0.0037 24.4 6.0 38 120-157 13-53 (75)
62 2wuj_A Septum site-determining 31.8 26 0.00089 26.4 2.4 33 105-140 24-56 (57)
63 2rjz_A PILO protein; structura 30.8 66 0.0022 28.5 5.3 43 114-157 11-53 (147)
64 3u59_A Tropomyosin beta chain; 29.8 1.7E+02 0.0057 24.2 7.4 57 98-157 34-96 (101)
65 3u06_A Protein claret segregat 29.7 88 0.003 32.5 6.8 45 121-166 6-50 (412)
66 2zkr_v 60S ribosomal protein L 28.9 1.1E+02 0.0037 26.7 6.2 48 118-165 12-64 (123)
67 1r73_A TM1492, 50S ribosomal p 28.1 1.3E+02 0.0045 23.2 6.0 46 118-163 9-58 (66)
68 4a17_U RPL35, 60S ribosomal pr 27.8 1.2E+02 0.0042 26.5 6.3 27 118-144 13-39 (124)
69 3uul_A Utrophin; spectrin repe 26.6 1.7E+02 0.0059 23.4 7.0 55 100-154 52-114 (118)
70 1uix_A RHO-associated kinase; 25.9 1.4E+02 0.0049 23.7 5.8 18 121-138 14-31 (71)
71 3hnw_A Uncharacterized protein 25.9 94 0.0032 27.5 5.3 37 122-158 86-122 (138)
72 1vq8_V 50S ribosomal protein L 25.6 2E+02 0.0069 22.5 6.7 46 118-163 12-62 (71)
73 3mq7_A Bone marrow stromal ant 25.3 98 0.0033 26.9 5.1 42 106-149 54-95 (121)
74 3v2d_2 50S ribosomal protein L 24.8 1.8E+02 0.006 22.9 6.2 27 118-144 16-42 (72)
75 4etp_A Kinesin-like protein KA 24.5 1.2E+02 0.0042 31.2 6.8 46 120-166 5-50 (403)
76 3na7_A HP0958; flagellar bioge 24.0 1.7E+02 0.0057 28.0 7.3 70 99-168 106-179 (256)
77 1ic2_A Tropomyosin alpha chain 23.9 2.6E+02 0.009 22.0 7.3 27 120-146 43-69 (81)
78 3iz5_c 60S ribosomal protein L 23.9 1.7E+02 0.0058 25.6 6.5 27 118-144 14-40 (124)
79 2xv5_A Lamin-A/C; structural p 23.8 2.7E+02 0.0093 22.0 7.2 24 151-174 38-63 (74)
80 2h8b_A Insulin-like 3; insulin 23.6 14 0.00046 23.7 -0.4 8 92-99 16-23 (26)
81 3fpp_A Macrolide-specific effl 23.0 1.4E+02 0.0047 29.0 6.6 24 126-149 70-93 (341)
82 4gkw_A Spindle assembly abnorm 22.7 2.8E+02 0.0096 24.6 7.6 59 101-159 43-104 (167)
83 1s1c_X RHO-associated, coiled- 22.6 1.7E+02 0.0057 23.2 5.6 18 121-138 16-33 (71)
84 3uun_A Dystrophin; triple heli 22.6 2.6E+02 0.009 22.1 7.3 54 100-153 52-113 (119)
85 1lwu_C Fibrinogen gamma chain; 22.5 1.6E+02 0.0055 29.6 7.0 41 120-160 7-47 (323)
86 2zjr_V 50S ribosomal protein L 22.4 1.5E+02 0.0051 22.9 5.3 46 118-163 9-58 (67)
87 3g80_A Protein B2; RNA-binding 21.9 1.9E+02 0.0065 23.9 5.9 41 99-142 37-77 (97)
88 2akf_A Coronin-1A; coiled coil 21.8 1.7E+02 0.0058 19.4 4.5 26 121-146 2-27 (32)
89 2r2v_A GCN4 leucine zipper; co 21.7 91 0.0031 21.3 3.3 25 101-132 5-29 (34)
90 1ic2_A Tropomyosin alpha chain 21.6 2.4E+02 0.0081 22.3 6.5 34 124-157 40-73 (81)
91 3ajw_A Flagellar FLIJ protein; 21.6 2.4E+02 0.0081 24.0 7.1 47 120-166 76-122 (150)
92 1c1g_A Tropomyosin; contractIl 21.5 2.4E+02 0.0081 25.2 7.5 30 120-149 57-86 (284)
93 2w6b_A RHO guanine nucleotide 21.1 2.2E+02 0.0074 21.5 5.6 36 120-155 12-50 (56)
94 3vkg_A Dynein heavy chain, cyt 20.8 1.8E+02 0.0061 38.2 8.3 36 121-156 2010-2045(3245)
95 1ek9_A Outer membrane protein 20.6 1.3E+02 0.0043 29.7 5.8 31 126-156 153-183 (428)
96 3lay_A Zinc resistance-associa 20.1 1.3E+02 0.0043 27.8 5.2 43 99-141 94-136 (175)
No 1
>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A*
Probab=100.00 E-value=5.2e-38 Score=323.55 Aligned_cols=167 Identities=29% Similarity=0.624 Sum_probs=143.3
Q ss_pred cccccccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcCCC
Q 010738 210 YNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDG 289 (502)
Q Consensus 210 ~~~~l~~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~FdldG 289 (502)
|.+.+++.|++||+++|| +|+++.++++|++|+|+|+.||+++|+.|+|||||++|+.|.++++.|+||||||+||+||
T Consensus 1 m~~~~~~~W~~v~~~~el-~g~~~~~~~~g~~vvv~R~~~G~v~a~~n~CpHrg~~L~~G~~~~~~i~CpyHgw~fd~~G 79 (349)
T 3gke_A 1 MATFVRNAWYVAALPEEL-SEKPLGRTILDTPLALYRQPDGVVAALLDICPHRFAPLSDGILVNGHLQCPYHGLEFDGGG 79 (349)
T ss_dssp -CCCCCSSCEEEECGGGC-CSSCEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCGGGCEEETTEEECTTTCCEECTTC
T ss_pred CCcccccccEEEEEHHHC-CCCeEEEEECCEEEEEEEcCCCcEEEEeCcCCCCCcCCccCCccceEEEECCCCCEEcCCC
Confidence 346788999999999999 8999999999999999999999999999999999999999999899999999999999999
Q ss_pred CcccCCC-cc--cccccccccceEEeeceEEEecCCCC-CC-CCCCCCC--CCCCceEeEEEEEEEecccchhccccCCC
Q 010738 290 KCEKMPS-TQ--LRNVKIKSLPCFEQEGMIWIWPGDEP-PT-ATIPCLL--PPSGFEIHAEIVMELPIEHGLLLDNLLDL 362 (502)
Q Consensus 290 ~cv~vP~-~~--~~~~~L~~~pV~e~~G~IwV~lg~~~-p~-~~lpe~~--~~~~~~v~~~~~~~v~~Nwk~~vEN~lD~ 362 (502)
+|+.+|+ .. ....+|++|||.+++|+|||++++++ +. ..+|++. +..++.+. ...++++||||+++||++|+
T Consensus 80 ~~~~~P~~~~~~~~~~~l~~~~v~~~~G~V~v~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~nwk~~~EN~~D~ 158 (349)
T 3gke_A 80 QCVHNPHGNGARPASLNVRSFPVVERDALIWIWPGDPALADPGAIPDFGCRVDPAYRTV-GGYGHVDCNYKLLVDNLMDL 158 (349)
T ss_dssp CEEECCSTTCCCCGGGCCCBCCEEEETTEEEECCSCGGGCCGGGSCCCGGGGCTTSEEE-EEEEEESSCHHHHHHHHHCG
T ss_pred CccccCccccccccccccceeeEEEECCEEEEeeCCCCCCcccccCCccccCCCCCEEE-eEEEEEecCHHhHHHhcccc
Confidence 9999995 21 12578999999999999999998764 21 1245442 23456654 45679999999999999999
Q ss_pred CCCCcCCcccccCCCC
Q 010738 363 AHAPFTHTSTFAKGWS 378 (502)
Q Consensus 363 yH~~~vH~~tfg~~~~ 378 (502)
||++++|+++++....
T Consensus 159 ~H~~~~H~~~~~~~~~ 174 (349)
T 3gke_A 159 GHAQYVHRANAQTDAF 174 (349)
T ss_dssp GGHHHHTHHHHCCTTG
T ss_pred ccchhccchhhcCccc
Confidence 9999999999987654
No 2
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=100.00 E-value=8.9e-38 Score=328.65 Aligned_cols=180 Identities=20% Similarity=0.287 Sum_probs=156.4
Q ss_pred cccCCCCCChhhhHhhhccCCCCcccccCCCCCcccccccceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEEE
Q 010738 177 QTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCV 255 (502)
Q Consensus 177 ~~~~~~~ts~~~~~~e~~~i~~~~l~~~gp~~p~~~~l~~~W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A~ 255 (502)
..+.+.|+|+++|+.|+++||+ +.|++||+++||++ |++++++++|++|+|+|+.||+++|+
T Consensus 18 ~lp~~~Y~d~~~~~~E~~~if~-----------------~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG~v~A~ 80 (409)
T 3n0q_A 18 ALDQAFYTDAEVFQTDLQEIFY-----------------KEWLFAIPACELDKPGSYVTHQVGNYNVIIVRGADNVIRAF 80 (409)
T ss_dssp CCCHHHHHCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEE
T ss_pred cCCHHHcCCHHHHHHHHHHHHh-----------------cCCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCCCEEee
Confidence 4455588999999999999996 79999999999986 89999999999999999999999999
Q ss_pred eecCCCCCCCCCC-CCccceeeeeeecceEEcCCCCcccCCCcc----cccccccccceEEeeceEEEecCCCCCCCCCC
Q 010738 256 QNTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ----LRNVKIKSLPCFEQEGMIWIWPGDEPPTATIP 330 (502)
Q Consensus 256 ~N~CpHRGa~Ls~-G~v~~~~IvCPYHGW~FdldG~cv~vP~~~----~~~~~L~~~pV~e~~G~IwV~lg~~~p~~~lp 330 (502)
.|+|||||++|+. |.++++.|+||||||+||+||+|+++|... ..+.+|++|+|++++|+|||++++++| +++
T Consensus 81 ~n~C~Hrga~L~~~g~~~~~~i~CpyHgw~fd~dG~~~~~P~~~~~~~~~~~~L~~~~v~~~~G~Vfv~~~~~~~--~l~ 158 (409)
T 3n0q_A 81 HNACRHRGSVICKAKKGNNPKLVCPYHQWTYELDGRLLWARDMGPDFEPSRHGLKTVHCRELAGLIYICLADEAP--DFE 158 (409)
T ss_dssp ESCCTTTCCCSCCSSEEECSSEECTTTCCEECTTSCEEECTTCCTTCCGGGCSCCEEEEEEETTEEEEECSSSCC--CCH
T ss_pred cCcCCcCcCCccCcCccCCCEEEECCCCCEEeCCCCcccCCcCCcccCcccCCCceEEEEEECCEEEEEeCCCCC--ChH
Confidence 9999999999996 888889999999999999999999999753 245789999999999999999987754 454
Q ss_pred CCCC----------CCCceEeEEEEEEEecccchhccccCCCCCCCcCCcccccC
Q 010738 331 CLLP----------PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAK 375 (502)
Q Consensus 331 e~~~----------~~~~~v~~~~~~~v~~Nwk~~vEN~lD~yH~~~vH~~tfg~ 375 (502)
++++ ...+.+.....++++||||+++||++|+||++++|+++++.
T Consensus 159 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~ 213 (409)
T 3n0q_A 159 RFAEVARPYLEVHDLSNAKVAHESSIVERGNWKLVWENNRECYHCGGNHPALCRT 213 (409)
T ss_dssp HHHHHHHHHHHTTCGGGEEEEEEEEEEESSCHHHHHHHHTCCTTHHHHCTTGGGT
T ss_pred HhhhhhhhhhccccCCCeEEeeEEEEEEecchHhhhhhccccccccccCcchhhc
Confidence 4432 12344445567889999999999999999999999988764
No 3
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=100.00 E-value=4.3e-37 Score=327.51 Aligned_cols=181 Identities=19% Similarity=0.291 Sum_probs=156.4
Q ss_pred cccCCCCCChhhhHhhhccCCCCcccccCCCCCcccccccceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEEE
Q 010738 177 QTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCV 255 (502)
Q Consensus 177 ~~~~~~~ts~~~~~~e~~~i~~~~l~~~gp~~p~~~~l~~~W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A~ 255 (502)
..+...|||+++|+.|+++||. +.|++||+++||++ |++++++++|++|+|+|+.||+++||
T Consensus 34 ~~~~~~Ytd~~~~~~E~~~if~-----------------~~W~~v~~~~elp~~G~~~~~~i~~~~vvv~R~~dG~v~A~ 96 (457)
T 3gzx_A 34 KLDARIYADQDLYQLELERVFG-----------------RSWLMLGHETHIPKIGDYLTTYMGEDPVIMVRQKDQSIKVF 96 (457)
T ss_dssp EEEGGGGTCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEE
T ss_pred cCCHHHcCCHHHHHHHHHHHHh-----------------cCCEEEeEHHHcCCCCCeEEEEECCEEEEEEECCCCeEEEE
Confidence 3456689999999999999996 79999999999986 79999999999999999999999999
Q ss_pred eecCCCCCCCCCCCC-ccceeeeeeecceEEcCCCCcccCCCcc--------------cccccccccceEEeeceEEEec
Q 010738 256 QNTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQ--------------LRNVKIKSLPCFEQEGMIWIWP 320 (502)
Q Consensus 256 ~N~CpHRGa~Ls~G~-v~~~~IvCPYHGW~FdldG~cv~vP~~~--------------~~~~~L~~~pV~e~~G~IwV~l 320 (502)
.|+|||||++|+.|. ++++.|+||||||+||++|+|+.+|+.+ ....+|++|+|.+++|+||||+
T Consensus 97 ~n~C~Hrga~L~~g~~g~~~~i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~L~~~~v~e~~G~Vfv~~ 176 (457)
T 3gzx_A 97 LNQCRHRGMRIVRSDGGNAKAFTCTYHGWAYDIAGNLVNVPFEKEAFCDKKEGDCGFDKADWGPLQARVETYKGLVFANW 176 (457)
T ss_dssp ESCCTTTCCCSCCSSEEECSEEECTTTCCEEETTSCEEECTTHHHHTCSSSTTTTSCCGGGCCCCEEEEEEETTEEEEES
T ss_pred eCcCCCCCcCccCCCCCcCCEEEcCCCCCEecCCCcceecCccccccccccccccccChhhCCCceEeEEEECCEEEEec
Confidence 999999999999985 5778999999999999999999999853 1236799999999999999999
Q ss_pred CCCCCCCCCCCCCCC-------------CCceEe-EEEEEEEecccchhcccc-CCCCCCC-cCCcccccCC
Q 010738 321 GDEPPTATIPCLLPP-------------SGFEIH-AEIVMELPIEHGLLLDNL-LDLAHAP-FTHTSTFAKG 376 (502)
Q Consensus 321 g~~~p~~~lpe~~~~-------------~~~~v~-~~~~~~v~~Nwk~~vEN~-lD~yH~~-~vH~~tfg~~ 376 (502)
++++| ++++++++ .++.+. +...+.++||||+++||+ +|+||++ ++|.++++.+
T Consensus 177 ~~~ap--~l~e~lg~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~NWKl~~EN~~~D~yH~~~~~H~~~~~~~ 246 (457)
T 3gzx_A 177 DPEAP--DLKTYLSDAMPYMDVMLDRTEAGTEAIGGIQKWVIPCNWKFAAEQFCSDMYHAGTMSHLSGVLAG 246 (457)
T ss_dssp CTTSC--CHHHHTTTCHHHHHHHHSSSTTCEEECSCCEEEEESSCHHHHHHHHHHBCTTTTTTTTHHHHHHT
T ss_pred CCCCC--ChHHHHhhhHHHHHHHhccCCCceEEEcceEEEEEccccchhhhccccccCCcccceehhhhhcc
Confidence 88754 55555432 234444 246788999999999999 8999999 9999887654
No 4
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=100.00 E-value=3.1e-37 Score=324.79 Aligned_cols=179 Identities=18% Similarity=0.260 Sum_probs=155.5
Q ss_pred ccCCCCCChhhhHhhhccCCCCcccccCCCCCcccccccceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEEEe
Q 010738 178 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQ 256 (502)
Q Consensus 178 ~~~~~~ts~~~~~~e~~~i~~~~l~~~gp~~p~~~~l~~~W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A~~ 256 (502)
.+.+.|+|+++|+.|+++||+ +.|++||+++||++ |++++++++|++|+|+|+.||+++|+.
T Consensus 21 lp~~~Y~d~~~~~~E~~~if~-----------------~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG~v~A~~ 83 (412)
T 3vca_A 21 LEQPFYTSPEVYALDLQHIFY-----------------KQWLYAVPVCQLAKAGSYTTLRVGAYEVVIVRSRDGEVRAFH 83 (412)
T ss_dssp CCHHHHHCHHHHHHHHHHTTT-----------------TSCEEEEEGGGGCSTTEEEEEEETTEEEEEEECTTSCEEEEE
T ss_pred CCHHHcCCHHHHHHHHHHHHh-----------------ccCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCCCEEEec
Confidence 445578999999999999996 78999999999995 899999999999999999999999999
Q ss_pred ecCCCCCCCCC-CCCccceeeeeeecceEEcCCCCcccCCCcc----cccccccccceEEeeceEEEecCCCCCCCCCCC
Q 010738 257 NTCAHRACPLH-LGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ----LRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPC 331 (502)
Q Consensus 257 N~CpHRGa~Ls-~G~v~~~~IvCPYHGW~FdldG~cv~vP~~~----~~~~~L~~~pV~e~~G~IwV~lg~~~p~~~lpe 331 (502)
|+|||||++|+ .|.++++.|+||||||+||++|+|+.+|... ..+.+|++|+|++++|+|||++++++| ++++
T Consensus 84 n~CpHrga~L~~~g~~~~~~i~CPyHgw~fdldG~~~~~P~~~~~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p--~l~~ 161 (412)
T 3vca_A 84 NSCRHRGSLICKARQGQVAKLVCPYHQWTYELDGKLIWANDMGPDFDASKYGLKPVNLRNLDGLIYICLSDTPP--DFQT 161 (412)
T ss_dssp SSCTTTCCCSCCSSEEECSSEECTTTCCEECTTSCEEECTTCCTTCCGGGCSCCEEEEEEETTEEEEECSSSCC--CCHH
T ss_pred ccCCCCCCEeecccccCCCEEEcCCCCCEEcCCCccccCCccccccCcccCCCcEEEEEEECCEEEEEecCCCC--CHHH
Confidence 99999999998 6888889999999999999999999999753 235789999999999999999987754 4544
Q ss_pred CCC----------CCCceEeEEEEEEEecccchhccccCCCCCCCcCCcccccC
Q 010738 332 LLP----------PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAK 375 (502)
Q Consensus 332 ~~~----------~~~~~v~~~~~~~v~~Nwk~~vEN~lD~yH~~~vH~~tfg~ 375 (502)
+++ ...+.+.....++++||||+++||++|+||++++|+++++.
T Consensus 162 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~ 215 (412)
T 3vca_A 162 FAQLARPYLEVHDLKDAKVAFTSTIIEKGNWKLVWENNRECYHCSSNHPALCRS 215 (412)
T ss_dssp HHHHHHHHHHTTCGGGEEEEEEEEEEESSCHHHHHHHHTCCTTHHHHCHHHHTT
T ss_pred HhhhhHHhhccccCCCeEEeEEEEEEEccCchhhHhhccccccCcccCcchhhc
Confidence 432 12334445567889999999999999999999999988764
No 5
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=100.00 E-value=1.3e-36 Score=322.17 Aligned_cols=180 Identities=19% Similarity=0.293 Sum_probs=154.3
Q ss_pred ccc-CCCCCChhhhHhhhccCCCCcccccCCCCCcccccccceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEE
Q 010738 177 QTC-ASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGC 254 (502)
Q Consensus 177 ~~~-~~~~ts~~~~~~e~~~i~~~~l~~~gp~~p~~~~l~~~W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A 254 (502)
..+ .+.|||+++|+.|++++|. +.|++||+++||++ |+++++.++|++|+|+|+.||+++|
T Consensus 12 ~~~~~~~y~~~~~~~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G~v~a 74 (447)
T 2bmo_A 12 LTQKLLIHGDKELFQHELKTIFA-----------------RNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRA 74 (447)
T ss_dssp CEEEGGGGTCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEE
T ss_pred CCCccceeCCHHHHHHHHHHhhc-----------------cCCeEEeEHHHCCCCCCeEEEEECCeeEEEEECCCCCEEE
Confidence 344 5689999999999999996 68999999999985 8899999999999999999999999
Q ss_pred EeecCCCCCCCCCCCCc-cceeeeeeecceEEcCCCCcccCCCcc--------cccccccccc-eEEeeceEEEecCCCC
Q 010738 255 VQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMPSTQ--------LRNVKIKSLP-CFEQEGMIWIWPGDEP 324 (502)
Q Consensus 255 ~~N~CpHRGa~Ls~G~v-~~~~IvCPYHGW~FdldG~cv~vP~~~--------~~~~~L~~~p-V~e~~G~IwV~lg~~~ 324 (502)
+.|+|||||++|+.|.. +++.|+||||||+||+||+|+.+|..+ ....+|++|| |++++|+|||++++++
T Consensus 75 ~~n~CpHrga~L~~g~~g~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~v~~~~G~v~v~~~~~~ 154 (447)
T 2bmo_A 75 FLNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEA 154 (447)
T ss_dssp EESBCTTTCCBCCCSSEEECSEEECTTTCCEEETTSCEEECTTHHHHTGGGCCGGGCCCCBCSEEEEETTEEEEESCTTC
T ss_pred EeccCcCCCCCccccccCCcCeEECCCCcchhcCCCcccccCcccccccccCCHhHCCCcccceEEEECCEEEEEcCCCC
Confidence 99999999999999865 568999999999999999999999743 1246899998 9999999999998765
Q ss_pred CCCCCCCCCC------------CCCceEe-EEEEEEEecccchhcccc-CCCCCCCcCCcccccC
Q 010738 325 PTATIPCLLP------------PSGFEIH-AEIVMELPIEHGLLLDNL-LDLAHAPFTHTSTFAK 375 (502)
Q Consensus 325 p~~~lpe~~~------------~~~~~v~-~~~~~~v~~Nwk~~vEN~-lD~yH~~~vH~~tfg~ 375 (502)
| +++++++ +.++.+. ....++++||||+++||+ +|+||++++|..+++.
T Consensus 155 ~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~~D~yH~~~~H~~~l~~ 217 (447)
T 2bmo_A 155 P--PLIDYLGDAAWYLEPTFKYSGGLELVGPPGKVVVKANWKSFAENFVGDGYHVGWTHAAALRA 217 (447)
T ss_dssp C--CHHHHHTTHHHHHHHHHTTTSCEEEEEEEEEEEESSCHHHHHHHHHHBCTTHHHHTHHHHHH
T ss_pred C--CHHHHhccHHHHHHHHhccCCCeEEeeeeEEEEECCCcchhhhcCCCCCCCCcccchhhhhc
Confidence 4 4444432 2345554 355789999999999999 7999999999877765
No 6
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.2e-35 Score=309.97 Aligned_cols=173 Identities=20% Similarity=0.399 Sum_probs=141.8
Q ss_pred cccccCCCCCcccccccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeee
Q 010738 200 SLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCP 279 (502)
Q Consensus 200 ~l~~~gp~~p~~~~l~~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCP 279 (502)
.+.+++++++ ..+|.+.|++||+++||++|+++.++++|++|+|+|+.+|+++|+.|+|||||++|+.|.++++.|+||
T Consensus 9 ~~~~~~~~~~-~~~f~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~~~G~v~a~~n~CpHrga~L~~g~~~~~~i~Cp 87 (386)
T 2zyl_A 9 GVREIDAGAL-PTRYARGWHCLGVAKDYLEGKPHGVEAFGTKLVVFADSHGDLKVLDGYCRHMGGDLSEGTVKGDEVACP 87 (386)
T ss_dssp -----CCCCC-CSSCCSEEEEEEEGGGGCSSSCEEEEETTEEEEEEECTTSCEEEEESBCTTTCCBGGGSEEETTEEECT
T ss_pred eeEEccCCCC-chhhhcceEEEEEHHHCCCCCeEEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCCCCcccCCEEEeC
Confidence 4456677765 457778999999999999999999999999999999999999999999999999999999888999999
Q ss_pred ecceEEcCCCCcccCCCccc--ccccccccceEEeeceEEEecCCCC-CC---CCCCCCCC--CCCceEeEEEEEEEe-c
Q 010738 280 YHGWEYSTDGKCEKMPSTQL--RNVKIKSLPCFEQEGMIWIWPGDEP-PT---ATIPCLLP--PSGFEIHAEIVMELP-I 350 (502)
Q Consensus 280 YHGW~FdldG~cv~vP~~~~--~~~~L~~~pV~e~~G~IwV~lg~~~-p~---~~lpe~~~--~~~~~v~~~~~~~v~-~ 350 (502)
||||+||++|+|+.+|.... ...+|++|||++++|+|||+++++. ++ ..+|++.. ..++.......++++ |
T Consensus 88 yHgw~f~~~G~~~~~P~~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 167 (386)
T 2zyl_A 88 FHDWRWGGDGRCKLVPYARRTPRMARTRSWTTDVRSGLLFVWHDHEGNPPDPAVRIPEIPEAASDEWTDWRWNRILIEGS 167 (386)
T ss_dssp TTCCEEETTSBEEECTTCSSCCTTCBCCEECEEEETTEEEEEECTTCCCCCGGGCCCCCGGGGCTTBCCCEEEEEEEESS
T ss_pred CCCCEECCCCCccccCcccccCcccCcceEeEEEECCEEEEEECCccCCCcccccCcccccccCCCceEEEEEEEEEcCc
Confidence 99999999999999998543 2368999999999999999997653 21 12343322 234443344567899 9
Q ss_pred ccchhccccCCCCCCCcCCcccc
Q 010738 351 EHGLLLDNLLDLAHAPFTHTSTF 373 (502)
Q Consensus 351 Nwk~~vEN~lD~yH~~~vH~~tf 373 (502)
|||.++||++|+||++++|+++.
T Consensus 168 nwk~~~EN~~D~~H~~~~H~~~~ 190 (386)
T 2zyl_A 168 NCRDIIDNVTDMAHFFYIHFGLP 190 (386)
T ss_dssp CGGGGGGGGGCSTHHHHTTCEEE
T ss_pred CHHhHhhhcccccchhhhCcCcc
Confidence 99999999999999999999754
No 7
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=100.00 E-value=2.9e-36 Score=320.22 Aligned_cols=180 Identities=18% Similarity=0.307 Sum_probs=154.1
Q ss_pred cccCCCCCChhhhHhhhccCCCCcccccCCCCCcccccccceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEEE
Q 010738 177 QTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCV 255 (502)
Q Consensus 177 ~~~~~~~ts~~~~~~e~~~i~~~~l~~~gp~~p~~~~l~~~W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A~ 255 (502)
..+.+.|||+++|+.|++++|. +.|++||+++||++ |+++++.++|++|+|+|+.+|+++|+
T Consensus 14 ~~~~~~y~~~~~~~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G~v~a~ 76 (454)
T 2gbw_A 14 SQSRQVFWDEDVYALEIERIFS-----------------RAWLMLGHESLVPKPGDFITTYMAEDKVILSHQSDGTFRAF 76 (454)
T ss_dssp EEEGGGGTCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEE
T ss_pred ccCHHHcCCHHHHHHHHHHHhh-----------------cCcEEEeEHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEEE
Confidence 3456689999999999999996 68999999999995 89999999999999999999999999
Q ss_pred eecCCCCCCCCCCCCc-cceeeeeeecceEEcCCCCcccCCCccc--------ccccccccceEEeeceEEEecCCCCCC
Q 010738 256 QNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMPSTQL--------RNVKIKSLPCFEQEGMIWIWPGDEPPT 326 (502)
Q Consensus 256 ~N~CpHRGa~Ls~G~v-~~~~IvCPYHGW~FdldG~cv~vP~~~~--------~~~~L~~~pV~e~~G~IwV~lg~~~p~ 326 (502)
.|+|||||++|+.|.. +++.|+||||||+||++|+|+.+|..+. ...+|++|+|++++|+|||++++++|
T Consensus 77 ~n~CpHrga~L~~g~~g~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~p- 155 (454)
T 2gbw_A 77 INSCSHRGNQICHADSGNAKAFVCNYHGWVFGQDGSLVDVPLESRCYHNSLDKQKLAAKSVRVETYKGFIFGCHDPEAP- 155 (454)
T ss_dssp ESSCTTTCCCSCCCSEEECSEEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGCCCCEEEEEEETTEEEEECCTTCC-
T ss_pred eccCCCCCCCCcccccCCcCEEEeCCCCCEecCCCCcccCCcccccccccCCHhhCCCeeEEEEEECCEEEEEeCCCCC-
Confidence 9999999999998765 5779999999999999999999997531 24679999999999999999987654
Q ss_pred CCCCCCCC-------------CCCceEe-EEEEEEEecccchhcccc-CCCCCCCcCCcccccC
Q 010738 327 ATIPCLLP-------------PSGFEIH-AEIVMELPIEHGLLLDNL-LDLAHAPFTHTSTFAK 375 (502)
Q Consensus 327 ~~lpe~~~-------------~~~~~v~-~~~~~~v~~Nwk~~vEN~-lD~yH~~~vH~~tfg~ 375 (502)
+++++++ +.++.+. ....++++||||+++||+ +|+||++++|..+++.
T Consensus 156 -~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~H~~~~~~ 218 (454)
T 2gbw_A 156 -SLEDYLGEFRYYLDTIWEGAGGGMELLGPPMKSLLQCNWKVPAENFIGDGYHVGWTHAAALSQ 218 (454)
T ss_dssp -CHHHHHGGGHHHHHHHHTTTTTCEEEEEEEEEEEESSCTHHHHHHHHHBCTTHHHHTHHHHHH
T ss_pred -CHHHHhhhhHHHHHHHHhcCCCceEEEeeEEEEEeCCCccchhhhcCCccCCCCcCCHhHHhc
Confidence 4554432 1345554 355788999999999999 7999999999877765
No 8
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=100.00 E-value=9.3e-36 Score=317.70 Aligned_cols=182 Identities=19% Similarity=0.326 Sum_probs=153.2
Q ss_pred ccccCCCCCChhhhHhhhccCCCCcccccCCCCCcccccccceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEE
Q 010738 176 DQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGC 254 (502)
Q Consensus 176 ~~~~~~~~ts~~~~~~e~~~i~~~~l~~~gp~~p~~~~l~~~W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A 254 (502)
...+.+.|||+++|+.|++++|. +.|++||+++||++ |++++++++|++|+|+|+.||+++|
T Consensus 21 ~~lp~~~Ytd~~~~~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~~~g~~vvv~R~~~G~v~a 83 (470)
T 2b1x_A 21 WTVPAAIINDPEVHDVERERIFG-----------------HAWVFLAHESEIPERGDYVVRYISEDQFIVCRDEGGEIRG 83 (470)
T ss_dssp CEEEGGGSSCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEE
T ss_pred CcCCHHHcCCHHHHHHHHHHHhh-----------------cCCeEeeeHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEE
Confidence 34556789999999999999995 68999999999997 7899999999999999999999999
Q ss_pred EeecCCCCCCCCCCCCccc-eeeeeeecceEEcCCCCcccCCCccc--------cccccccc-ceEEeeceEEEecCCCC
Q 010738 255 VQNTCAHRACPLHLGSVNE-GRIQCPYHGWEYSTDGKCEKMPSTQL--------RNVKIKSL-PCFEQEGMIWIWPGDEP 324 (502)
Q Consensus 255 ~~N~CpHRGa~Ls~G~v~~-~~IvCPYHGW~FdldG~cv~vP~~~~--------~~~~L~~~-pV~e~~G~IwV~lg~~~ 324 (502)
+.|+|||||++|+.|...+ +.|+||||||+||+||+|+.+|..+. .+.+|.++ .+++++|+|||++++++
T Consensus 84 ~~n~C~Hrga~L~~g~~~~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~p~ve~~~G~Vfv~~~~~~ 163 (470)
T 2b1x_A 84 HLNACRHRGMQVCRAEMGNTSHFRCPYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGSLDPHA 163 (470)
T ss_dssp EESSCTTTCCCSCCSSEEECSEEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGGSCCBCSEEEEETTEEEEESCTTC
T ss_pred EecccCCCCCEeeccCcCCCCEEEECCCCCeecCCCceeecCcccccccccCCHhhCCCcccceEEEECCEEEEEeCCCC
Confidence 9999999999999987654 78999999999999999999998531 24678888 46667999999998765
Q ss_pred CCCCCCCCCC-------------CCCceEeE-EEEEEEecccchhcccc-CCCCCCCcCCcccccCC
Q 010738 325 PTATIPCLLP-------------PSGFEIHA-EIVMELPIEHGLLLDNL-LDLAHAPFTHTSTFAKG 376 (502)
Q Consensus 325 p~~~lpe~~~-------------~~~~~v~~-~~~~~v~~Nwk~~vEN~-lD~yH~~~vH~~tfg~~ 376 (502)
| +++++++ ..++.+.. ...++++||||+++||+ +|+||++++|+.+++.+
T Consensus 164 ~--~~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~NWk~~~EN~~~D~yH~~~~H~~~~~~~ 228 (470)
T 2b1x_A 164 D--SLEDYLGDLKFYLDIVLDRSDAGLQVVGAPQRWVIDANWKLGADNFVGDAYHTMMTHRSMVELG 228 (470)
T ss_dssp C--CHHHHHGGGHHHHHHHHCSSSSCEEECSCCEEEEESSCTHHHHHHHHHCCTTHHHHTHHHHHHT
T ss_pred C--CHHHHhcchhHHHHHHhccCCCCeEEEeeeEEEEeccCHhhhhhccccccCcccccChhhhhcc
Confidence 4 4444432 23455543 45688999999999999 99999999999877543
No 9
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A*
Probab=100.00 E-value=5.7e-35 Score=309.92 Aligned_cols=172 Identities=20% Similarity=0.343 Sum_probs=143.4
Q ss_pred CChhhhH--hhhccCCCCcccccCCCCCcccccccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCC
Q 010738 184 TSKQSLD--IVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAH 261 (502)
Q Consensus 184 ts~~~~~--~e~~~i~~~~l~~~gp~~p~~~~l~~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpH 261 (502)
+|+++|+ .|++.+|+ +.|++||+++||++|+++.++++|++|+|+| .+|+++|+.|+|||
T Consensus 25 ~~~~~~~~~~e~~~if~-----------------~~W~~v~~~~el~~g~~~~~~~~g~~vvl~r-~~G~v~a~~n~CpH 86 (446)
T 1z01_A 25 KTQSQYQPYKDAAWGFI-----------------NHWYPALFTHELEEDQVQGIQICGVPIVLRR-VNGKVFALKDQCLH 86 (446)
T ss_dssp HHHGGGHHHHHCTTCBC-----------------SEEEEEEEGGGSCBTCEEEEEETTEEEEEEE-ETTEEEEEESSCTT
T ss_pred cCHHHhhhhhhhhhhhh-----------------hceEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCEEEEEeCcCCC
Confidence 9999999 88888875 7999999999999899999999999999999 69999999999999
Q ss_pred CCCCCCCCC--ccceeeeeeecceEEcC-CCCcccCCCccc----ccccccccceEEeeceEEEecCCCC----CCCCCC
Q 010738 262 RACPLHLGS--VNEGRIQCPYHGWEYST-DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEP----PTATIP 330 (502)
Q Consensus 262 RGa~Ls~G~--v~~~~IvCPYHGW~Fdl-dG~cv~vP~~~~----~~~~L~~~pV~e~~G~IwV~lg~~~----p~~~lp 330 (502)
||++|+.|. ++++.|+||||||+||+ +|+|+.+|..+. ...+|++|||.+++|+|||++++++ ..++++
T Consensus 87 rga~L~~g~~~~~~~~i~CpyHgw~fd~~~G~~~~~p~~p~~~~~~~~~l~~~~v~~~~G~V~v~~~~~~~p~~~~~~l~ 166 (446)
T 1z01_A 87 RGVRLSEKPTCFTKSTISCWYHGFTFDLETGKLVTIVANPEDKLIGTTGVTTYPVHEVNGMIFVFVREDDFPDEDVPPLA 166 (446)
T ss_dssp TCCCGGGSCCCSSTTEEECTTTCEEEETTTCBEEEETTCTTCTTTTSCBCCEECEEEETTEEEEEECCTTCCGGGCCCGG
T ss_pred CcCCCCCCccCCCCCEEEeCCCCeEEeCCCCCccccCCCccccCcccCCCcEEEEEEECCEEEEEeCCccccccCCCChh
Confidence 999999986 46789999999999997 999999976431 2478999999999999999998642 111222
Q ss_pred CCCC----------------------CCCceEeEEEEEEEecccchhccccCCCCCCCcCCcccccC
Q 010738 331 CLLP----------------------PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAK 375 (502)
Q Consensus 331 e~~~----------------------~~~~~v~~~~~~~v~~Nwk~~vEN~lD~yH~~~vH~~tfg~ 375 (502)
+.++ ..++.+. ....+++||||+++||++|+||+ ++|+++++.
T Consensus 167 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~nwk~~~EN~~D~~H~-~vH~~~~~~ 231 (446)
T 1z01_A 167 HDLPFRFPERSEQFPHPLWPSSPSVLDDNAVVH-GMHRTGFGNWRIACENGFDNAHI-LVHKDNTIV 231 (446)
T ss_dssp GGSCCCTTTTTTTSCCTTSCCCCCTTSTTEEEE-EEEEEEESCHHHHHTTTTCTTGG-GGGTTCHHH
T ss_pred HhccchhhhhhhccccccccccccccCCCeEEE-eEEEEEcCCHHHHHHhccchhhh-hhhhhhhhc
Confidence 1111 1234443 34568999999999999999999 999988753
No 10
>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans}
Probab=100.00 E-value=5.4e-35 Score=305.03 Aligned_cols=163 Identities=25% Similarity=0.492 Sum_probs=137.7
Q ss_pred CcccccccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCC--ccceeeeeeecceEEc
Q 010738 209 PYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYS 286 (502)
Q Consensus 209 p~~~~l~~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~--v~~~~IvCPYHGW~Fd 286 (502)
....+|++.|++||+++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|. +.++.|+||||||+||
T Consensus 26 E~~~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~Fd 104 (394)
T 3gcf_A 26 EATLGFDNHWHPAAFDHELAEGEFVAVTMLGEKVLLTR-AKGEVKAIADGCAHRGVPFSKEPLCFKAGTVSCWYHGWTYD 104 (394)
T ss_dssp HCTTCEESEEEEEEEGGGCCBTCEEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGSCBCSSTTEEECTTTCEEEE
T ss_pred hhhhhhcccCEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCeEEEeeCcCCCCCCCCcCCcccCcCCEEECCCCCcEEE
Confidence 33556789999999999999999999999999999999 69999999999999999999986 4678999999999999
Q ss_pred C-CCCcccCCCccc----ccccccccceEEeeceEEEecCCCCCCCCCCCCCC----CCCceEeEEEEEEEecccchhcc
Q 010738 287 T-DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLP----PSGFEIHAEIVMELPIEHGLLLD 357 (502)
Q Consensus 287 l-dG~cv~vP~~~~----~~~~L~~~pV~e~~G~IwV~lg~~~p~~~lpe~~~----~~~~~v~~~~~~~v~~Nwk~~vE 357 (502)
+ +|+|+.+|+.+. ...+|++|||++++|+|||+++++++ +++++.++ ..++.+.+ ...+++||||+++|
T Consensus 105 l~dG~cv~iP~~p~~~~~~~~~L~~ypV~e~~G~VfV~lgd~~~-ppL~e~L~~~~~d~~~~~~~-~~~~i~~NWK~~~E 182 (394)
T 3gcf_A 105 LDDGRLVDVLTSPGSPVIGKIGIKVYPVQVAQGVVFVFIGDEEP-HALSEDLPPGFLDEDTHLLG-IRRTVQSNWRLGVE 182 (394)
T ss_dssp TTTCBEEEETTSTTCTTTTSCBCCEECEEEETTEEEEEESSSCC-CCGGGGSCTTTTCTTEEEEE-EEEEESSCHHHHHH
T ss_pred CCCCceeccCCCcccccccccCceEEEEEEECCcEEEecCCCCC-CCchhhcchhhcCCceEEEe-EEEEEecCchhhHh
Confidence 8 899999987532 35789999999999999999976432 24443322 23444443 46789999999999
Q ss_pred ccCCCCCCCcCCcccccC
Q 010738 358 NLLDLAHAPFTHTSTFAK 375 (502)
Q Consensus 358 N~lD~yH~~~vH~~tfg~ 375 (502)
|++|+||+ ++|+++++.
T Consensus 183 N~lD~yH~-~vH~~ti~~ 199 (394)
T 3gcf_A 183 NGFDTTHI-FMHRNSPWV 199 (394)
T ss_dssp HHSCSSGG-GGGTTCHHH
T ss_pred hccccchh-hCchhhhcc
Confidence 99999999 999999875
No 11
>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas}
Probab=100.00 E-value=5.3e-34 Score=296.91 Aligned_cols=163 Identities=24% Similarity=0.512 Sum_probs=137.7
Q ss_pred CcccccccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCC--ccceeeeeeecceEEc
Q 010738 209 PYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYS 286 (502)
Q Consensus 209 p~~~~l~~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~--v~~~~IvCPYHGW~Fd 286 (502)
....+|++.|++||+++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|. ++++.|+||||||+||
T Consensus 23 E~e~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~Fd 101 (389)
T 3gkq_A 23 DAKLGFRNHWYPVRLSAEVAEASPVPVQLLGEKVLLNR-VDGVVHAIADRCLHRGVTLSDKVECYSKATISCWYHGWTYR 101 (389)
T ss_dssp HCTTCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGGCCCSBTTEEECTTTCEEEE
T ss_pred hhhhhhcCccEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCeEEEeCCcCCCCCCCccCCcccCcCCEEECCCCCCEEE
Confidence 34566779999999999999999999999999999999 69999999999999999999986 4678999999999999
Q ss_pred C-CCCcccCCCccc----ccccccccceEEeeceEEEecCCCCCCCCCCCCCC----CCCceEeEEEEEEEecccchhcc
Q 010738 287 T-DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLP----PSGFEIHAEIVMELPIEHGLLLD 357 (502)
Q Consensus 287 l-dG~cv~vP~~~~----~~~~L~~~pV~e~~G~IwV~lg~~~p~~~lpe~~~----~~~~~v~~~~~~~v~~Nwk~~vE 357 (502)
+ +|+|+.+|..+. ...+|++|||++++|+|||+++++++ +++++.++ ..++.+.+ ..++++||||+++|
T Consensus 102 l~dG~cv~iP~~P~~~~~~~~~L~~ypV~e~~G~VfV~lgd~~~-ppL~e~l~~~~~~~~~~~~~-~~~~i~~NWK~~~E 179 (389)
T 3gkq_A 102 WDNGKLVDILTNPTSVQIGRHALKTYPVREEKGLVFLFVGDQEP-HDLAEDVPPGFLDADLAVHG-QHRVVDANWRMGVE 179 (389)
T ss_dssp TTTCBEEEETTCTTCTTTTSCBCCBCCEEEETTEEEEEESSSCC-CCGGGGSCTTTTCTTEEEEE-EEEEESSCHHHHHH
T ss_pred CCCCCeecccCCcccccccccCCcEEEEEEECCeEEEecCCCCC-CCchhhcchhccCCceEEEe-EEEEEecCchhhHH
Confidence 8 899999887532 35789999999999999999975432 23443322 23455443 45789999999999
Q ss_pred ccCCCCCCCcCCcccccC
Q 010738 358 NLLDLAHAPFTHTSTFAK 375 (502)
Q Consensus 358 N~lD~yH~~~vH~~tfg~ 375 (502)
|++|+||+ ++|+++++.
T Consensus 180 N~lD~yH~-~vH~~si~~ 196 (389)
T 3gkq_A 180 NGFDAGHV-FIHKSSILL 196 (389)
T ss_dssp HHTCSGGG-GGGTTCHHH
T ss_pred hcchhchh-hCccccccc
Confidence 99999999 999998865
No 12
>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*
Probab=100.00 E-value=4e-34 Score=298.39 Aligned_cols=163 Identities=24% Similarity=0.454 Sum_probs=136.1
Q ss_pred CcccccccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCc--cceeeeeeecceEEc
Q 010738 209 PYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV--NEGRIQCPYHGWEYS 286 (502)
Q Consensus 209 p~~~~l~~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v--~~~~IvCPYHGW~Fd 286 (502)
++..+|++.|++||+++||++|+++.++++|++|+|+|+ +|+++|+.|+|||||++|+.|.+ +++.|+||||||+||
T Consensus 20 e~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~-~G~v~a~~n~CpHrga~L~~g~~~~~~~~i~CpyHgw~f~ 98 (392)
T 2de6_A 20 DAKLGFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNRI-DGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYR 98 (392)
T ss_dssp HCTTCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEEE-TTEEEEEESSCTTTCCCGGGGCCCCSTTEEECTTTCEEEE
T ss_pred hhhhhhccccEEEEEHHHCCCCCeEEEEECCEEEEEEEe-CCEEEEEeCcCCCCCCCCcCCcccCCCCEEEeCCCCCEEc
Confidence 345567899999999999999999999999999999995 99999999999999999999875 468999999999999
Q ss_pred C-CCCcccCCCccc----ccccccccceEEeeceEEEecCCCCCCCCCCCCC----CCCCceEeEEEEEEEecccchhcc
Q 010738 287 T-DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLL----PPSGFEIHAEIVMELPIEHGLLLD 357 (502)
Q Consensus 287 l-dG~cv~vP~~~~----~~~~L~~~pV~e~~G~IwV~lg~~~p~~~lpe~~----~~~~~~v~~~~~~~v~~Nwk~~vE 357 (502)
+ +|+|+.+|..+. ...+|++|||.+++|+|||+++++++ +++++.+ ...++.+. ....+++||||+++|
T Consensus 99 ~~~G~~~~~p~~p~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~~-~~l~~~l~~~~~~~~~~~~-~~~~~~~~nwk~~~E 176 (392)
T 2de6_A 99 WEDGVLCDILTNPTSAQIGRQKLKTYPVQEAKGCVFIYLGDGDP-PPLARDTPPNFLDDDMEIL-GKNQIIKSNWRLAVE 176 (392)
T ss_dssp TTTCBEEEETTCTTCTTTTSCBCCBCCEEEETTEEEEEESSSSC-CCGGGGSCTTTTCTTEEEE-EEEEEESSCHHHHHH
T ss_pred CCCCccccccCCccccccccCCCceEeEEEECCEEEEEeCCCCC-CChhHhccccccCCCeEEE-EEEEEEecChHhhhH
Confidence 7 999999976432 25789999999999999999976432 2333222 12345554 346789999999999
Q ss_pred ccCCCCCCCcCCcccccC
Q 010738 358 NLLDLAHAPFTHTSTFAK 375 (502)
Q Consensus 358 N~lD~yH~~~vH~~tfg~ 375 (502)
|++|+||+ ++|+++++.
T Consensus 177 N~~D~~H~-~~H~~~~~~ 193 (392)
T 2de6_A 177 NGFDPSHI-YIHKDSILV 193 (392)
T ss_dssp HHHCGGGG-GGGTTCHHH
T ss_pred hcchhhhh-hhhcchhcc
Confidence 99999999 999988754
No 13
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=100.00 E-value=1.4e-34 Score=307.89 Aligned_cols=178 Identities=19% Similarity=0.295 Sum_probs=150.8
Q ss_pred cccCCCCCChhhhHhhhccCCCCcccccCCCCCcccccccceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCceEEE
Q 010738 177 QTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCV 255 (502)
Q Consensus 177 ~~~~~~~ts~~~~~~e~~~i~~~~l~~~gp~~p~~~~l~~~W~~V~~~seL~~-g~~~~~~l~G~~IVV~R~~dG~v~A~ 255 (502)
..+.+.|+|+++|+.|++++|. +.|++||+++||++ |+++.+.++|++|+|+|+.||+++|+
T Consensus 32 ~~p~~~y~d~~~~~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~i~~~~vvv~R~~~G~v~a~ 94 (460)
T 1uli_A 32 RLDPRIYTDEALYEQELERIFG-----------------RSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKNGEIRVF 94 (460)
T ss_dssp EECGGGGTCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEE
T ss_pred cCCHHHcCCHHHHHHHHHHhhh-----------------cCceEEEEHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEEE
Confidence 3455689999999999999995 68999999999986 78899999999999999999999999
Q ss_pred eecCCCCCCCCCCCCc-cceeeeeeecceEEcCCCCcccCCCccc-------ccccccccceEEeeceEEEecCCCCCCC
Q 010738 256 QNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMPSTQL-------RNVKIKSLPCFEQEGMIWIWPGDEPPTA 327 (502)
Q Consensus 256 ~N~CpHRGa~Ls~G~v-~~~~IvCPYHGW~FdldG~cv~vP~~~~-------~~~~L~~~pV~e~~G~IwV~lg~~~p~~ 327 (502)
.|+|||||++|+.|.. +++.|+||||||+||+||+|+.+|..+. ...+|++|+|++++|+|||++++++|
T Consensus 95 ~n~CpHrga~L~~g~~g~~~~i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p-- 172 (460)
T 1uli_A 95 LNQCRHRGMRICRADGGNAKSFTCSYHGWAYDTGGNLVSVPFEEQAFPGLRKEDWGPLQARVETYKGLIFANWDADAP-- 172 (460)
T ss_dssp ESCCTTTCCCSCCSSEEECSCEECTTTCCEECTTCCEEECTTHHHHCTTCCGGGSSCCEEEEEEETTEEEEECCTTSC--
T ss_pred eeeCCCCCCCCccccCCCCCEEEcCCCCCEEeCCCCEeeCCccccccCCCCHhHcCCceeeEEEECCEEEEEeCCCCC--
Confidence 9999999999998765 4679999999999999999999997531 23679999999999999999987654
Q ss_pred CCCCCCCC-------------CCceEe-EEEEEEEecccchhcccc-CCCCCC-CcCCcccc
Q 010738 328 TIPCLLPP-------------SGFEIH-AEIVMELPIEHGLLLDNL-LDLAHA-PFTHTSTF 373 (502)
Q Consensus 328 ~lpe~~~~-------------~~~~v~-~~~~~~v~~Nwk~~vEN~-lD~yH~-~~vH~~tf 373 (502)
++++++++ .++.+. ....++++||||+++||+ +|+||+ .++|..++
T Consensus 173 ~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~~H~~~~ 234 (460)
T 1uli_A 173 DLDTYLGEAKFYMDHMLDRTEAGTEAIPGIQKWVIPCNWKFAAEQFCSDMYHAGTTSHLSGI 234 (460)
T ss_dssp CHHHHHTTHHHHHHHHHCSSTTCEEECSCCEEEEECSCHHHHHHHHHHBHHHHHTTTTHHHH
T ss_pred CHHHHhcchHHHHHHHhhcCCCceEEEeeEEEEEeccCHHHHHhhcCCCCCCchhhhhhhcc
Confidence 44444321 234442 345678999999999999 799999 79998766
No 14
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}
Probab=99.93 E-value=2.5e-26 Score=196.68 Aligned_cols=101 Identities=19% Similarity=0.315 Sum_probs=94.8
Q ss_pred cceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcC-CCCcccC
Q 010738 216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKM 294 (502)
Q Consensus 216 ~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~Fdl-dG~cv~v 294 (502)
..|++||.++||++|+++.+++.|++++|+| .+|+++|+.|+|||||++|+.|.++++.|+||||||+||+ +|+|+..
T Consensus 2 ~~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r-~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~~G~~~~~ 80 (103)
T 2qpz_A 2 VKWIEAVALSDILEGDVLGVTVEGKELALYE-VEGEIYATDNLCTHGSARMSDGYLEGREIECPLHQGRFDVCTGKALCA 80 (103)
T ss_dssp CCEEEEEETTSCCTTCEEEEEETTEEEEEEE-ETTEEEEEESBCSSSSCBGGGSEEETTEEECTTTTCEEETTTCCEEET
T ss_pred CccEEEEEHHHcCCCCEEEEEECCEEEEEEE-ECCEEEEECCcCCCCCCCCCCCeEeCCEEECCCCCCEEeCCCCCEeCC
Confidence 3699999999999999999999999999999 6999999999999999999999888899999999999997 9999999
Q ss_pred CCcccccccccccceEEeeceEEEecC
Q 010738 295 PSTQLRNVKIKSLPCFEQEGMIWIWPG 321 (502)
Q Consensus 295 P~~~~~~~~L~~~pV~e~~G~IwV~lg 321 (502)
|.. .+|++|++++++|.|||+++
T Consensus 81 P~~----~~L~~~~v~~~~g~v~v~~~ 103 (103)
T 2qpz_A 81 PVT----QNIKTYPVKIENLRVMIDLS 103 (103)
T ss_dssp TCC----SCCCEECEEEETTEEEEECC
T ss_pred CCC----CCCCEEeEEEECCEEEEEcC
Confidence 974 47999999999999999874
No 15
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=99.93 E-value=2.7e-26 Score=199.15 Aligned_cols=104 Identities=19% Similarity=0.293 Sum_probs=95.9
Q ss_pred ceEEeeecCCCCCCCceeEee-CCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcCC-CCcccC
Q 010738 217 FWFPVAFSTDLKDDTMVPFDC-FEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTD-GKCEKM 294 (502)
Q Consensus 217 ~W~~V~~~seL~~g~~~~~~l-~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~Fdld-G~cv~v 294 (502)
.|++|+.++||++|+++.+++ +|++++|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||++ |+|+.
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~tG~~~~- 79 (111)
T 1vm9_A 1 SFEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGIN- 79 (111)
T ss_dssp CCEEEEEGGGSCTTCEEEEECTTCCEEEEEEETTTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCBBSS-
T ss_pred CcEEEEEHHHCCCCCeEEEEEcCCCEEEEEEeCCCeEEEEeCcCCCCCcCCCCceEcCCEEEcCCCCCEEeCCCccCCC-
Confidence 499999999999999999999 999999999889999999999999999999998888999999999999985 99998
Q ss_pred CCcccccccccccceEEeeceEEEecCCCCC
Q 010738 295 PSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 325 (502)
Q Consensus 295 P~~~~~~~~L~~~pV~e~~G~IwV~lg~~~p 325 (502)
|. ..+|++|++++++|+|||+++++++
T Consensus 80 p~----~~~L~~~~v~~~~g~v~v~~~~~~~ 106 (111)
T 1vm9_A 80 PD----DAALAEYPVEVKGDDIYVSTKGILP 106 (111)
T ss_dssp SS----SCBCCEECEEEETTEEEECCTTCCC
T ss_pred CC----cCCcCEEEEEEECCEEEEeccCcCC
Confidence 65 3579999999999999999976543
No 16
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Probab=99.93 E-value=1.7e-26 Score=199.57 Aligned_cols=102 Identities=24% Similarity=0.380 Sum_probs=94.8
Q ss_pred ceEEeeecCCCCCCCceeEeeCCee-EEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcC-CCCcccC
Q 010738 217 FWFPVAFSTDLKDDTMVPFDCFEEP-WVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKM 294 (502)
Q Consensus 217 ~W~~V~~~seL~~g~~~~~~l~G~~-IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~Fdl-dG~cv~v 294 (502)
.|++||.++||++|+++.+++.|++ ++|+|+ +|+++|+.|+|||||++|+.|.++++.|+||||||+||+ +|+|+..
T Consensus 3 ~w~~v~~~~~l~~g~~~~~~~~g~~~v~v~r~-~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~tG~~~~~ 81 (108)
T 2i7f_A 3 NKLRLCQVASVKDGEPVAVYQEKMPALAVYNV-DGEVFVTDNLCTHGNAMLTDGYQDGTIIECPFHGGSFDIATGAAKAF 81 (108)
T ss_dssp CEEEEEEGGGCBTTBCEEECCTTSSCEEEEEE-TTEEEEEESBCSSSSCBGGGSEEETTEEECSSTTCEEETTTCCBCST
T ss_pred ccEEEEEHhHcCCCCeEEEEECCeeEEEEEEE-CCEEEEEeCcCCCCCCCCCCCEEeCCEEEcCCCCCEEeCCCcCEeCC
Confidence 5999999999999999999999999 999998 999999999999999999999888899999999999996 9999999
Q ss_pred CCcccccccccccceEEeeceEEEecCCC
Q 010738 295 PSTQLRNVKIKSLPCFEQEGMIWIWPGDE 323 (502)
Q Consensus 295 P~~~~~~~~L~~~pV~e~~G~IwV~lg~~ 323 (502)
|.. .+|++|++++++|.|||+++++
T Consensus 82 P~~----~~L~~~~v~~~~g~v~v~~~~~ 106 (108)
T 2i7f_A 82 PCQ----IPIKTYPVTIEDGWVCIDQPKE 106 (108)
T ss_dssp TCC----SCCCEECEEEETTEEEEECC--
T ss_pred CCC----CCccEEeEEEECCEEEEeCCCC
Confidence 974 5799999999999999998754
No 17
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Probab=99.93 E-value=4.2e-26 Score=198.42 Aligned_cols=103 Identities=17% Similarity=0.233 Sum_probs=96.0
Q ss_pred cceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCC-CccceeeeeeecceEEcC-CCCccc
Q 010738 216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG-SVNEGRIQCPYHGWEYST-DGKCEK 293 (502)
Q Consensus 216 ~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G-~v~~~~IvCPYHGW~Fdl-dG~cv~ 293 (502)
..|++||.++||++|+++.+++.|++|+|+|+ +|+++|+.|+|||||++|+.| .++++.|+||||||+||+ ||+|+.
T Consensus 4 ~~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r~-~g~~~A~~n~CpH~g~~L~~g~~~~~~~i~CP~Hg~~Fd~~tG~~~~ 82 (112)
T 1fqt_A 4 MKFTRVCDRRDVPEGEALKVESGGTSVAIFNV-DGELFATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKS 82 (112)
T ss_dssp CCCEEEEEGGGSCTTCEEEEEETTEEEEEEEE-TTEEEEEESBCTTSSCBSSTTCCEETTEEECTTTCCEEETTTCCEEE
T ss_pred cceEEeEeHHHCCCCCeEEEEECCEEEEEEEE-CCEEEEEECCCCCCCcCCCCCCEEcCCEEECCCCCCEEeCCCCcEeC
Confidence 36999999999999999999999999999998 999999999999999999998 778889999999999998 899999
Q ss_pred CCCcccccccccccceEEeeceEEEecCCC
Q 010738 294 MPSTQLRNVKIKSLPCFEQEGMIWIWPGDE 323 (502)
Q Consensus 294 vP~~~~~~~~L~~~pV~e~~G~IwV~lg~~ 323 (502)
.|.. .+|++|++++++|+|||+++++
T Consensus 83 ~P~~----~~L~~~~v~~~~g~v~v~~~~~ 108 (112)
T 1fqt_A 83 PPPC----EALKIFPIRIEDNDVLVDFEAG 108 (112)
T ss_dssp SSCC----SCCCBCCEEEETTEEEECTTCC
T ss_pred CCCC----CCccEEEEEEECCEEEEEeccc
Confidence 9973 5799999999999999998654
No 18
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*
Probab=99.93 E-value=2.7e-26 Score=201.06 Aligned_cols=104 Identities=21% Similarity=0.463 Sum_probs=96.0
Q ss_pred ccceEEeeecCCCCCCCceeEeeCCe-eEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcC-CCCcc
Q 010738 215 KNFWFPVAFSTDLKDDTMVPFDCFEE-PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCE 292 (502)
Q Consensus 215 ~~~W~~V~~~seL~~g~~~~~~l~G~-~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~Fdl-dG~cv 292 (502)
.+.|++||.++||++|+++.+++.|+ +|+|+|. +|+++|+.|+|||||++|+.|.++++.|+||||||+||+ +|+|+
T Consensus 2 ~~~w~~v~~~~el~~g~~~~~~~~g~~~v~v~r~-~g~~~A~~n~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~ 80 (115)
T 2de6_D 2 NQIWLKVCAASDMQPGTIRRVNRVGAAPLAVYRV-GDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPA 80 (115)
T ss_dssp --CCEEEEEGGGCCTTEEEEEEETTEEEEEEEEE-TTEEEEEESBCTTSSCBGGGSEEETTEEECTTTCCEEETTTCCEE
T ss_pred CcceEEeEEHHHCCCCCeEEEEECCccEEEEEEE-CCEEEEEeCCCCCCCCCCcCCEEeCCEEECCCCCCEEcCCCcCEe
Confidence 36799999999999999999999999 9999998 999999999999999999999888899999999999997 99999
Q ss_pred cCCCcccccccccccceEEeeceEEEecCCC
Q 010738 293 KMPSTQLRNVKIKSLPCFEQEGMIWIWPGDE 323 (502)
Q Consensus 293 ~vP~~~~~~~~L~~~pV~e~~G~IwV~lg~~ 323 (502)
..|.. .+|++|++++++|.|||+++++
T Consensus 81 ~~P~~----~~L~~~~v~~~~g~V~v~~~~~ 107 (115)
T 2de6_D 81 SSPCT----VPLGVFEVEVKEGEVYVAGEKK 107 (115)
T ss_dssp ETTCC----SCCCEEEEEESSSEEEEEEEEC
T ss_pred CCCCc----CCCCEEEEEEECCEEEEecCCc
Confidence 99974 5799999999999999998654
No 19
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*
Probab=99.93 E-value=3.5e-26 Score=196.89 Aligned_cols=101 Identities=23% Similarity=0.348 Sum_probs=94.8
Q ss_pred ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcC-CCCcccCC
Q 010738 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMP 295 (502)
Q Consensus 217 ~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~Fdl-dG~cv~vP 295 (502)
.|++||.++||++|+++.+.++|++|+|+| .+|+++|+.|+|||||++|+.|.++++.|+||||||+||+ +|+|+..|
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~g~~i~v~r-~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~~~P 79 (106)
T 3dqy_A 1 TWTYILRQGDLPPGEMQRYEGGPEPVMVCN-VDGEFFAVQDTCTHGDWALSDGYLDGDIVECTLHFGKFCVRTGKVKALP 79 (106)
T ss_dssp CCEEEEEGGGSCTTCEEEECCSSSCEEEEE-ETTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCCEEETT
T ss_pred CcEEEEEHHHCCCCCEEEEEECCEEEEEEE-ECCEEEEEeCcCCCCCCCCcCcEEeCCEEECCCCCCEEeCCCCCEeCCC
Confidence 599999999999999999999999999999 5899999999999999999999888899999999999995 99999999
Q ss_pred CcccccccccccceEEeeceEEEecCC
Q 010738 296 STQLRNVKIKSLPCFEQEGMIWIWPGD 322 (502)
Q Consensus 296 ~~~~~~~~L~~~pV~e~~G~IwV~lg~ 322 (502)
+. .+|++|++++++|.|||++++
T Consensus 80 ~~----~~L~~~~v~~~~g~v~v~~~~ 102 (106)
T 3dqy_A 80 AC----KPIKVFPIKVEGDEVHVDLDN 102 (106)
T ss_dssp CC----SCCCEECEEEETTEEEECGGG
T ss_pred CC----CCccEEEEEEECCEEEEEccc
Confidence 73 579999999999999998864
No 20
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=99.92 E-value=2.8e-25 Score=193.31 Aligned_cols=100 Identities=19% Similarity=0.217 Sum_probs=92.2
Q ss_pred ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCC-ceEEEeecCCCCCC-CCCCCCccc---e-eeeeeecceEEcC-CC
Q 010738 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDG-IPGCVQNTCAHRAC-PLHLGSVNE---G-RIQCPYHGWEYST-DG 289 (502)
Q Consensus 217 ~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG-~v~A~~N~CpHRGa-~Ls~G~v~~---~-~IvCPYHGW~Fdl-dG 289 (502)
.|++||.++||++|+++.+++.|++|+|+|+.+| +++|+.|+|||||+ +|+.|.+.+ . .|+||||||+||+ +|
T Consensus 6 ~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fd~~tG 85 (113)
T 2jo6_A 6 QWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDG 85 (113)
T ss_dssp CCEEEEETTTSCTTEEEEEEETTEEEEEEECSSSSCCEEEESSCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETTTT
T ss_pred hheEEeeHHHCCCCCeEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCeEEeccCCCcEEECCCCCCEEeCCCc
Confidence 5999999999999999999999999999998899 69999999999999 799997652 3 8999999999998 99
Q ss_pred CcccCCCcccccccccccceEEeeceEEEecC
Q 010738 290 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPG 321 (502)
Q Consensus 290 ~cv~vP~~~~~~~~L~~~pV~e~~G~IwV~lg 321 (502)
+|+..|. .+|++|||++++|+|||+++
T Consensus 86 ~~~~~P~-----~~l~~~~v~v~~g~V~v~~~ 112 (113)
T 2jo6_A 86 LCMEDEQ-----FSVKHYEARVKDGVVQLRGG 112 (113)
T ss_dssp EETTTTT-----TCCCEEEEEEETTEEEEECC
T ss_pred cCCCCCc-----ccccEEeEEEECCEEEEEcC
Confidence 9999996 47999999999999999874
No 21
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3
Probab=99.92 E-value=6.9e-25 Score=196.27 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=94.2
Q ss_pred ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCC-ceEEEeecCCCCCC-CCCCCCcc---c-eeeeeeecceEEcC-CC
Q 010738 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDG-IPGCVQNTCAHRAC-PLHLGSVN---E-GRIQCPYHGWEYST-DG 289 (502)
Q Consensus 217 ~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG-~v~A~~N~CpHRGa-~Ls~G~v~---~-~~IvCPYHGW~Fdl-dG 289 (502)
.|++||.++||++|+++.++++|++|+|+|+.+| +++|+.|+|||||+ +|+.|.+. + ..|+||||||+||+ ||
T Consensus 3 ~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~v~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~tG 82 (130)
T 2jza_A 3 QWTTVCKLDDILPGTGVCALVEQQQIAVFRPRNDEQVYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYDG 82 (130)
T ss_dssp SEEEEEETTTSCTTBCCEEEETTEEEEEEBCSSSSCCEEEBCCCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETTTC
T ss_pred ceEEEEEHHHCCCCCeEEEEECCcEEEEEEECCCCEEEEEeCcCCCCCCCcCCCccCcccCCCeEEECCCCCCEEeCCCc
Confidence 5999999999999999999999999999998778 99999999999999 59999764 2 48999999999998 99
Q ss_pred CcccCCCcccccccccccceEEeeceEEEecCCCC
Q 010738 290 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEP 324 (502)
Q Consensus 290 ~cv~vP~~~~~~~~L~~~pV~e~~G~IwV~lg~~~ 324 (502)
+|+..|. .+|++|+|++++|.|||++++++
T Consensus 83 ~~~~~P~-----~~L~~~~v~v~~g~V~V~~~~~~ 112 (130)
T 2jza_A 83 FCLEDGA-----YSVAAYDTQVTNGNVQISIADSD 112 (130)
T ss_dssp CBSSCCS-----SCCBCCCEEESSSEEEEECCCCC
T ss_pred CCCCCCc-----CcceEEEEEEECCEEEEEeCCCC
Confidence 9999997 47999999999999999997654
No 22
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Probab=99.92 E-value=2.1e-25 Score=196.51 Aligned_cols=103 Identities=14% Similarity=0.016 Sum_probs=95.0
Q ss_pred cceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCC-CCCCCCccce----eeeeeecceEEcC-CC
Q 010738 216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRAC-PLHLGSVNEG----RIQCPYHGWEYST-DG 289 (502)
Q Consensus 216 ~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa-~Ls~G~v~~~----~IvCPYHGW~Fdl-dG 289 (502)
+.|++||.++||++|+++.++++|++|+|+|+.+|+++|+.|+|||||+ +|+.|.+.++ .|+||||||+||+ +|
T Consensus 4 ~~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~~~G~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~tG 83 (119)
T 3c0d_A 4 LTKVKLCQLDDLMPFIGATVLIEGERVALFYIPDSGVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKSG 83 (119)
T ss_dssp CCEEEEEEGGGSCBTCCEEEEETTEEEEEEEETTTEEEEEESEETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTTC
T ss_pred CccEEEEEHHHCCCCCeEEEEECCeEEEEEEecCCeEEEEeCCCCCCCCccCCCeEEcCCCCCeEEECCCCCCEEECCCC
Confidence 5799999999999999999999999999999889999999999999999 8999876542 8999999999998 99
Q ss_pred CcccCCCcccccccccccceEEeeceEEEecCCC
Q 010738 290 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDE 323 (502)
Q Consensus 290 ~cv~vP~~~~~~~~L~~~pV~e~~G~IwV~lg~~ 323 (502)
+|+..|. .+|++|||++++|.|||++++.
T Consensus 84 ~~~~~P~-----~~l~~~~v~v~~g~V~v~~~~~ 112 (119)
T 3c0d_A 84 QCLEDEA-----HCLKTWRVTVDDNQVCYLAKEL 112 (119)
T ss_dssp BBSSCTT-----CBCCEECEEESSSEEEEECCCC
T ss_pred cCCCCCC-----ceeeEEEEEEECCEEEEEeCCc
Confidence 9999997 4799999999999999998654
No 23
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}
Probab=99.92 E-value=3.3e-25 Score=195.93 Aligned_cols=102 Identities=20% Similarity=0.318 Sum_probs=94.6
Q ss_pred ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCC--CccceeeeeeecceEEcC-CCCccc
Q 010738 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG--SVNEGRIQCPYHGWEYST-DGKCEK 293 (502)
Q Consensus 217 ~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G--~v~~~~IvCPYHGW~Fdl-dG~cv~ 293 (502)
.|++||.++||++|+++.+++.|++|+|+|. +|+++|+.|+|||||++|+.| .++++.|+||||||+||+ +|+|+.
T Consensus 10 ~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~-~g~~~A~~n~CpH~g~~L~~G~~~~~~~~i~CP~Hg~~Fdl~tG~~~~ 88 (121)
T 3gce_A 10 TPVRVATLDQLKPGVPTAFDVDGDEVMVVRD-GDSVYAISNLCSHAEAYLDMGVFHAESLEIECPLHVGRFDVRTGAPTA 88 (121)
T ss_dssp CCEEEEEGGGSCTTCCEEEEETTEEEEEEEE-TTEEEEEESBCSSSSCBGGGSEEETTTTEEECTTTCCEEETTTCCEEE
T ss_pred CcEEEEEHHHCCCCCEEEEEECCEEEEEEEE-CCEEEEEeCcCCCCCCCCCCCceeecCCEEEcCCCCCEEcCCCccEeC
Confidence 5999999999999999999999999999996 999999999999999999999 888899999999999995 999999
Q ss_pred CCCcccccccccccceEEeeceEEEecCCC
Q 010738 294 MPSTQLRNVKIKSLPCFEQEGMIWIWPGDE 323 (502)
Q Consensus 294 vP~~~~~~~~L~~~pV~e~~G~IwV~lg~~ 323 (502)
.|+. .+|++|++++++|.|||+++..
T Consensus 89 ~P~~----~~L~~~~v~v~~g~V~v~~~~~ 114 (121)
T 3gce_A 89 LPCV----LPVRAYDVVVDGTEILVAPKEA 114 (121)
T ss_dssp TTCC----SCCCBCCEEEETTEEEECCC--
T ss_pred CCCc----CCcceEEEEEECCEEEEEECcc
Confidence 9984 4799999999999999998654
No 24
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus}
Probab=99.91 E-value=3.1e-25 Score=204.31 Aligned_cols=109 Identities=24% Similarity=0.397 Sum_probs=95.2
Q ss_pred ccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCceEEEeecCCCCCCCCCCCCccc----eeeeeeecceEEcC-CC
Q 010738 215 KNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE----GRIQCPYHGWEYST-DG 289 (502)
Q Consensus 215 ~~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~~----~~IvCPYHGW~Fdl-dG 289 (502)
.+.|++||+++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|.+.+ +.|+||||||+||+ +|
T Consensus 14 ~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r-~~G~v~A~~n~CpH~g~~L~~G~~~~~~g~~~i~CP~Hgw~Fdl~tG 92 (157)
T 3d89_A 14 KYTSVCVGREEDIRKSERMTAVVHDREVVIFY-HKGEYHAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLATG 92 (157)
T ss_dssp CCSCEEEEEHHHHHHHSEEEEEETTEEEEEEE-ETTEEEEEESBCTTTCCBGGGSEEEEETTEEEEECTTTCCEEETTTC
T ss_pred CCceEEEEEHHHCCCCCeEEEEECCEEEEEEE-ECCEEEEEeCCCCCCCCCCcCCEecCcCCCCEEECCCCCCEEecCCc
Confidence 57899999999999888999999999999999 59999999999999999999998653 68999999999998 99
Q ss_pred Cccc--C-CCccc-------ccccccccceEEeeceEEEecCCCC
Q 010738 290 KCEK--M-PSTQL-------RNVKIKSLPCFEQEGMIWIWPGDEP 324 (502)
Q Consensus 290 ~cv~--v-P~~~~-------~~~~L~~~pV~e~~G~IwV~lg~~~ 324 (502)
+|+. + |.... ...+|++|+|++++|+|||++++++
T Consensus 93 ~~~~~~i~P~~~~~~~~~~~~~~~L~~~~v~v~~G~V~V~~~~~~ 137 (157)
T 3d89_A 93 EGLYQSINPKDPSAKPKWCSKGVKQRIHTVKVDNGNIYVTLSKEP 137 (157)
T ss_dssp EEEEEECCCC-----CEEEEEEECSCEEEEEEETTEEEEECCCCS
T ss_pred CEEEeccCCCccccccccccccCcceEEEEEEECCEEEEEeCCCC
Confidence 9986 3 53211 1367999999999999999998754
No 25
>4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis}
Probab=99.90 E-value=3.5e-24 Score=189.48 Aligned_cols=101 Identities=19% Similarity=0.206 Sum_probs=88.1
Q ss_pred cceEEeeecCCCCCCCceeEeeC-CeeEEEEEcCCCceEEEeecCCCCCCCCCCCCcc-----ceeeeeeecceEEcC-C
Q 010738 216 NFWFPVAFSTDLKDDTMVPFDCF-EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVN-----EGRIQCPYHGWEYST-D 288 (502)
Q Consensus 216 ~~W~~V~~~seL~~g~~~~~~l~-G~~IVV~R~~dG~v~A~~N~CpHRGa~Ls~G~v~-----~~~IvCPYHGW~Fdl-d 288 (502)
+.|++||.++||++|..+.+.+. |++|+|||..||+++|++|+|||||++|..|... +..|+||||||+||+ |
T Consensus 8 ~~W~~Vc~~~dL~~g~~~~~~~~~G~~v~l~r~~dG~v~A~~n~CpH~ga~L~~~~~~~~~~~~~~i~CP~Hg~~Fdl~t 87 (119)
T 4aiv_A 8 QVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFALDD 87 (119)
T ss_dssp EEEEEEEEGGGSCTTCCEEEECTTSCEEEEEECTTSCEEEEESBCTTTCCBCGGGSEEEEETTEEEEECTTTCCEEETTT
T ss_pred cceeEeeEHHHcCCCCceEEEEcCCcEEEEEEcCCCeEEEEECCCCCCCCccccCceeccccCCCEEECCCCCCEEeCCC
Confidence 57999999999999888888875 7999999998999999999999999999876432 236999999999995 8
Q ss_pred CCcccCCCcccccccccccceEE-eeceEEEecC
Q 010738 289 GKCEKMPSTQLRNVKIKSLPCFE-QEGMIWIWPG 321 (502)
Q Consensus 289 G~cv~vP~~~~~~~~L~~~pV~e-~~G~IwV~lg 321 (502)
|+|+..|.. +|++|||++ .+|.|||...
T Consensus 88 G~~~~~p~~-----~l~~ypv~ve~dG~V~V~~~ 116 (119)
T 4aiv_A 88 GSCLDDPRV-----SVPVYPARVTPEGRIQVARV 116 (119)
T ss_dssp CBBSSCTTC-----BCCEECEEECTTSEEEEEEE
T ss_pred CcCcCCCCC-----ccceEEEEEEeCCEEEEecC
Confidence 999999863 699999985 5899999753
No 26
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=99.87 E-value=8.1e-23 Score=192.29 Aligned_cols=142 Identities=15% Similarity=0.167 Sum_probs=87.8
Q ss_pred hHHHHHHHHhhhhhccccccccccccCC-CC--CChhhhHhhhccCCCCcccccCCCCCcccccccceEEeeecCCCCCC
Q 010738 154 KLAYMEALVNDRLLQDRHTSGTDQTCAS-PS--TSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDD 230 (502)
Q Consensus 154 ~~~~me~l~~~~~l~~~~~a~~~~~~~~-~~--ts~~~~~~e~~~i~~~~l~~~gp~~p~~~~l~~~W~~V~~~seL~~g 230 (502)
+-..|.++.||.||+++.+|++..+.+. +. +.+.. ........ | -+..||+++||++|
T Consensus 3 ~~~~~~~~~rr~fl~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~------------~------p~~~v~~~~dL~~g 63 (175)
T 4aay_B 3 RCQNMVDIGRRQFLRGGALAAAGATAAVFGVGAPQARA-ATAAAGVE------------Y------PANRLANISELTLN 63 (175)
T ss_dssp ------------------------------------------CCSCC------------C------CCEEEEEGGGCBBT
T ss_pred cchhhccccHHHHhhhhHHhhhheeEeccccccccccc-cccCcccC------------C------CcceEEEHHHCCCC
Confidence 4467889999999997666665322221 11 11111 11111111 1 23479999999999
Q ss_pred CceeEeeCC--eeEEEEEc---------CCCceEEEeecCCCCCCCCCCCCccceeeeeeecceEEcCC--CCcccCCCc
Q 010738 231 TMVPFDCFE--EPWVIFRG---------KDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTD--GKCEKMPST 297 (502)
Q Consensus 231 ~~~~~~l~G--~~IVV~R~---------~dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~Fdld--G~cv~vP~~ 297 (502)
+++.+++.+ .+++|+|. .+|+++|++|+|||+|++|+.| .+++.|+||||||+||.+ |+|+..|+.
T Consensus 64 ~~~~v~~~~~~~pv~v~R~g~~~~~~r~~~G~v~A~~n~CpH~G~~L~~g-~~~~~i~CP~Hg~~Fd~~~tG~~~~gPa~ 142 (175)
T 4aay_B 64 EPLDVAYPDEDAAGVLLKLGTRVEGGVGPDGDIVGFSTICPHKGFPLSYS-ADNKTFNCPGHFSVFDPEKGGQQVWGQAT 142 (175)
T ss_dssp BCEEEESSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-TTTTEEECTTTCCEEEGGGTTEEEECSCS
T ss_pred CEEEEEECCCCCEEEEEEcccccccccCCCCEEEEEeCCCCCCCCCCccC-CCCCEEEcCCCCCEECCCCCceEecCCCC
Confidence 999999874 58999997 5899999999999999999988 577899999999999975 999999984
Q ss_pred ccccccccccceEE-eeceEEEe
Q 010738 298 QLRNVKIKSLPCFE-QEGMIWIW 319 (502)
Q Consensus 298 ~~~~~~L~~~pV~e-~~G~IwV~ 319 (502)
..|++|++++ .+|.||+.
T Consensus 143 ----~~L~~y~v~vd~dG~V~av 161 (175)
T 4aay_B 143 ----QNLPQYVLRVADNGDIFAE 161 (175)
T ss_dssp ----SCCCBEEEEECTTSEEEEE
T ss_pred ----CCcCEEEEEEEcCCEEEEE
Confidence 4799999999 68999974
No 27
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=99.84 E-value=8.1e-21 Score=169.96 Aligned_cols=98 Identities=16% Similarity=0.274 Sum_probs=89.5
Q ss_pred cceEEeeecCCCCCCCceeEeeCCeeEEEEEcC--------------------------CCceEEEeecCCCCCCCCCCC
Q 010738 216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK--------------------------DGIPGCVQNTCAHRACPLHLG 269 (502)
Q Consensus 216 ~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~--------------------------dG~v~A~~N~CpHRGa~Ls~G 269 (502)
..|..+ ..++|++|+.+.+.+.|.+++|+|.. +|+++|+.|+|||+|++|+.|
T Consensus 4 ~~~~~v-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~~~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~~C~H~g~~l~~g 82 (129)
T 1rie_A 4 MSKIEI-KLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIAN 82 (129)
T ss_dssp CSSEEE-EGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEET
T ss_pred cCceEe-eHHHCCCCCEEEEEECCeEEEEEECCHHHHhhhhccccceecCcccccccccCCeEEEEECccCCCCeecccc
Confidence 356677 89999999999999999999999964 899999999999999999999
Q ss_pred CccceeeeeeecceEEcCCCCcccCCCcccccccccccceEE-eeceEEE
Q 010738 270 SVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI 318 (502)
Q Consensus 270 ~v~~~~IvCPYHGW~FdldG~cv~vP~~~~~~~~L~~~pV~e-~~G~IwV 318 (502)
.++++.|+||||||+||.+|+|+..|.. ..|+.||+++ .+|.|||
T Consensus 83 ~~~~~~i~CP~Hg~~fd~~G~~~~~P~~----~~l~~~~v~v~~~~~v~v 128 (129)
T 1rie_A 83 AGDFGGYYCPCHGSHYDASGRIRKGPAP----LNLEVPSYEFTSDDMVIV 128 (129)
T ss_dssp CTTTEEEEETTTTEEEETTCCEEESSCC----SCCCCCCEEESSSSEEEE
T ss_pred cCCCCEEEcCCCCCEEcCCCCEeeCCCC----CCCCceeEEEEeCCEEEE
Confidence 8888999999999999999999998874 4799999999 8999987
No 28
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*
Probab=99.81 E-value=1e-20 Score=171.55 Aligned_cols=101 Identities=17% Similarity=0.274 Sum_probs=88.2
Q ss_pred cceEEeee-cCCCCCCCceeEe-eCCeeEEEEEcCCCce--EEEeecCCCCCCCCCCCCccceeeeeeecceEEcCCCCc
Q 010738 216 NFWFPVAF-STDLKDDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKC 291 (502)
Q Consensus 216 ~~W~~V~~-~seL~~g~~~~~~-l~G~~IVV~R~~dG~v--~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~FdldG~c 291 (502)
..|..++. .+||+++..+.+. +.|++++++|+.+|++ +|+.|+|||||++|+.+. .++.|+||||||+||.+|+|
T Consensus 20 g~~i~v~~~~~dlp~g~~~~~~~~~g~~~ilv~~~~G~i~~~A~~n~CpH~g~~L~~g~-~~~~i~CP~Hg~~Fd~tG~~ 98 (139)
T 1rfs_A 20 GNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNA-AENKFICPCHGSQYNNQGRV 98 (139)
T ss_dssp SCBCBHHHHHHHSCTTCEEEEECGGGCEEEEEBCTTSSBCSEEEECBCTTTCCBCCEET-TTTEEECTTTCCEEETTCCE
T ss_pred CCEEEeehhHhhCCCCccEEEEecCCCeEEEEEeCCCcEEEEEEeCcCCCCCCCCccCC-CCCEEEcCCCCCEECCCCCC
Confidence 46777887 8999997665554 6788888888889999 999999999999999877 46899999999999999999
Q ss_pred ccCCCcccccccccccceEEeeceEEEecC
Q 010738 292 EKMPSTQLRNVKIKSLPCFEQEGMIWIWPG 321 (502)
Q Consensus 292 v~vP~~~~~~~~L~~~pV~e~~G~IwV~lg 321 (502)
+..|.. .+|++|++++++|.|||.+.
T Consensus 99 ~~~P~~----~~L~~~~v~v~~g~V~V~~~ 124 (139)
T 1rfs_A 99 VRGPAP----LSLALAHCDVDDGKVVFVPW 124 (139)
T ss_dssp EESSCC----SCCCEEEEEEETTEEEEEEC
T ss_pred ccCCCC----CCCCEEEEEEECCEEEEEeC
Confidence 999973 57999999999999999864
No 29
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B*
Probab=99.81 E-value=4.4e-20 Score=166.02 Aligned_cols=98 Identities=17% Similarity=0.201 Sum_probs=87.8
Q ss_pred ceEEeeecCCCCCCCceeEeeC--CeeEEEEEcC---------CCceEEEeecCCCCCCCCCCCCccceeeeeeecceEE
Q 010738 217 FWFPVAFSTDLKDDTMVPFDCF--EEPWVIFRGK---------DGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEY 285 (502)
Q Consensus 217 ~W~~V~~~seL~~g~~~~~~l~--G~~IVV~R~~---------dG~v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~F 285 (502)
-|+.||.++||++|+++.+.+. +.+++|+|.. +|+++|+.|+|||+|++|+.+ .+++.|+||||||+|
T Consensus 7 p~~~v~~~~dl~~g~~~~~~~~~~g~~v~v~r~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~~-~~~~~i~CP~Hg~~F 85 (133)
T 1g8k_B 7 PATAVSVAKNLAANEPVSFTYPDTSSPCVAVKLGAPVPGGVGPDDDIVAYSVLCTHMGCPTSYD-SSSKTFSCPCHFTEF 85 (133)
T ss_dssp CCEEEEEGGGCCBTCCEEEECSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-TTTTEEECTTTCCEE
T ss_pred CceeEEEHHHCCCCCeEEEEecCCCceEEEEEccccccccccCCCEEEEEeCcCCCCCCCCCcc-cCCCEEECCCCCCEE
Confidence 4899999999999999999885 8999999975 899999999999999999974 456899999999999
Q ss_pred cC--CCCcccCCCcccccccccccceEEe--eceEEEe
Q 010738 286 ST--DGKCEKMPSTQLRNVKIKSLPCFEQ--EGMIWIW 319 (502)
Q Consensus 286 dl--dG~cv~vP~~~~~~~~L~~~pV~e~--~G~IwV~ 319 (502)
|. +|+|+..|.. ..|++|++++. +|.|||.
T Consensus 86 d~~~~G~~~~gP~~----~~L~~~~v~v~~~g~~V~v~ 119 (133)
T 1g8k_B 86 DAEKAGQMICGEAT----ADLPRVLLRYDAASDALTAV 119 (133)
T ss_dssp EGGGTTEEEESSCS----SCCCEEEEEEETTTTEEEEE
T ss_pred CCCCCCCEEcCCCC----CCCCEEEEEEECCCCEEEEE
Confidence 98 8999999874 47999999998 6789995
No 30
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus}
Probab=99.63 E-value=3.7e-20 Score=167.04 Aligned_cols=97 Identities=16% Similarity=0.303 Sum_probs=81.2
Q ss_pred eecCCCCCCCceeEe-eCCeeEEEEEcCCCc--eEEEeecCCCCCCCCCCCCccceeeeeeecceEEcCCCCcccCCCcc
Q 010738 222 AFSTDLKDDTMVPFD-CFEEPWVIFRGKDGI--PGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ 298 (502)
Q Consensus 222 ~~~seL~~g~~~~~~-l~G~~IVV~R~~dG~--v~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~FdldG~cv~vP~~~ 298 (502)
...+++++|+...+. +.|.+.+++|..+|+ ++|+.|+|||||++|+.|. .++.|+||||||+||.+|+|+..|+.
T Consensus 21 ~~~~~l~~g~~~~v~~l~g~~~vlv~~~~G~~~v~A~~n~CpH~g~~L~~g~-~~~~i~CP~Hg~~Fd~tG~~~~~P~~- 98 (133)
T 3azc_A 21 EYLAKHLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNV-SENKFICPCHGSQYDSTGKVVRGPAP- 98 (133)
Confidence 456678888766665 345556666667898 9999999999999999887 67899999999999999999999974
Q ss_pred cccccccccceEE-eeceEEEecCCC
Q 010738 299 LRNVKIKSLPCFE-QEGMIWIWPGDE 323 (502)
Q Consensus 299 ~~~~~L~~~pV~e-~~G~IwV~lg~~ 323 (502)
.+|++|||++ ++|.|||.++.+
T Consensus 99 ---~~L~~ypv~v~~~g~V~V~~~~e 121 (133)
T 3azc_A 99 ---LSLALVKATVTEDDKLVFTPWTE 121 (133)
Confidence 4799999999 999999987653
No 31
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=99.74 E-value=8e-18 Score=159.52 Aligned_cols=99 Identities=17% Similarity=0.157 Sum_probs=85.4
Q ss_pred ccceEEeeecCCCCCCCceeEeeCCeeEEEEEcC--------------------------CCceEEEeecCCCCCCCCCC
Q 010738 215 KNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK--------------------------DGIPGCVQNTCAHRACPLHL 268 (502)
Q Consensus 215 ~~~W~~V~~~seL~~g~~~~~~l~G~~IVV~R~~--------------------------dG~v~A~~N~CpHRGa~Ls~ 268 (502)
...|..| ..++|++|+.+.+.+.|.+++|+|.. +|+++|+.|+|||+||.+..
T Consensus 60 a~~~v~V-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~i~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~iCtHlGc~p~~ 138 (185)
T 3cx5_E 60 AMAKVEV-NLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIG 138 (185)
T ss_dssp CCCCEEE-EGGGCCTTCEEEEEETTEEEEEEECCHHHHHHHHCSCGGGCSSCCCSTTTCSSTTEEEEECCCTTTSCCCEE
T ss_pred ccCcEEE-EHHHCCCCCeEEEEECCeEEEEEECCHHHhhhhhhcchhhhcCcccccccccCCeEEEEecccCCCCceecc
Confidence 3579999 69999999999999999999999964 69999999999999996443
Q ss_pred CCccceeeeeeecceEEcCCCCcccCCCcccccccccccceEEeeceEEE
Q 010738 269 GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWI 318 (502)
Q Consensus 269 G~v~~~~IvCPYHGW~FdldG~cv~vP~~~~~~~~L~~~pV~e~~G~IwV 318 (502)
..++.+.|.||||||+||.+|+++..|.. ..|+.+|+...+|.|||
T Consensus 139 ~~~~~~~~~CPcHGs~FD~~G~v~~gPa~----~~L~v~p~~v~~~~I~v 184 (185)
T 3cx5_E 139 EAGDFGGWFCPCHGSHYDISGRIRKGPAP----LNLEIPAYEFDGDKVIV 184 (185)
T ss_dssp EETTTTEEEETTTTEEECTTCCEEESSCC----SCCCCCCEEEETTEEEE
T ss_pred CCCCCCEEEcCCCCCEECCCCCEecCCCC----CCcceEEEEEECCEEEE
Confidence 33355789999999999999999999874 46888888888999987
No 32
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=99.72 E-value=2e-17 Score=156.91 Aligned_cols=96 Identities=22% Similarity=0.265 Sum_probs=83.7
Q ss_pred eEEeeecCCCCCCCceeEeeCCeeEEEEEc----------------------------------------CCCceEEEee
Q 010738 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRG----------------------------------------KDGIPGCVQN 257 (502)
Q Consensus 218 W~~V~~~seL~~g~~~~~~l~G~~IVV~R~----------------------------------------~dG~v~A~~N 257 (502)
|..| ..++|++|+.+.+++.|.+|+|+|. .+|+++|+.|
T Consensus 49 ~v~v-~ls~l~~G~~~~v~~~g~pv~i~rrt~~~i~~~~~~~~~~l~dp~~~~~~~p~~~~~~~~~r~~~~~g~~~a~~~ 127 (187)
T 2qjy_C 49 SIFV-DVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWG 127 (187)
T ss_dssp CEEE-ECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTCCEEEEEC
T ss_pred cEEE-EHHHCCCCCeEEEEECCEEEEEEECCHHHhhhhhccchhhccCcccccccccccccccccccccCCCCeEEEEeC
Confidence 5554 8999999999999999999999992 2899999999
Q ss_pred cCCCCCCCCCCC-CccceeeeeeecceEEcCCCCcccCCCcccccccccccceEEe-eceEEE
Q 010738 258 TCAHRACPLHLG-SVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQ-EGMIWI 318 (502)
Q Consensus 258 ~CpHRGa~Ls~G-~v~~~~IvCPYHGW~FdldG~cv~vP~~~~~~~~L~~~pV~e~-~G~IwV 318 (502)
+|||+|++|+.+ .++.+.|.||||||+||.+|+++..|.. ..|+.||+++. +|.|+|
T Consensus 128 ~C~H~G~~l~~~~~g~~~~~~CP~Hg~~Fd~~G~~~~gPa~----~~L~~~~~~v~~d~~i~i 186 (187)
T 2qjy_C 128 VCTHLGCSPIGGVSGDFGGWFCPCHGSHYDSAGRIRKGPAP----ENLPIPLAKFIDETTIQL 186 (187)
T ss_dssp CCTTTSCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCC----SCCCBCSEEEEETTEEEE
T ss_pred ccCCCCeECccCcCCCcCEEEeCCCCCEECCCCeEeCCCCC----CCCceEEEEEEeCCEEEE
Confidence 999999999983 4444789999999999999999998874 47999999986 688987
No 33
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=99.72 E-value=1.4e-17 Score=159.28 Aligned_cols=94 Identities=17% Similarity=0.293 Sum_probs=86.1
Q ss_pred eeecCCCCCCCceeEeeCCeeEEEEEcC--------------------------CCceEEEeecCCCCCCCCCCCCccce
Q 010738 221 VAFSTDLKDDTMVPFDCFEEPWVIFRGK--------------------------DGIPGCVQNTCAHRACPLHLGSVNEG 274 (502)
Q Consensus 221 V~~~seL~~g~~~~~~l~G~~IVV~R~~--------------------------dG~v~A~~N~CpHRGa~Ls~G~v~~~ 274 (502)
.+..++|++|+.+.+.+.|.+++|+|.. +|+++|+.|+|||+||+|+.|.++.+
T Consensus 75 ~v~ls~l~~G~~~~v~~~G~pV~V~r~t~~~i~~~~~~~~~~l~dp~~~~~r~~~ge~~a~~~~CtH~G~~l~~~~~~~~ 154 (196)
T 1pp9_E 75 EIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFG 154 (196)
T ss_dssp EEEGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHHSCTTTCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETCSTTS
T ss_pred EEEHHHCCCCCeEEEEECCEEEEEEECCHHHHhhhhccccccccCcccccccccCCeEEEEECccCCCCeeccccCCCCC
Confidence 5789999999999999999999999862 89999999999999999999887778
Q ss_pred eeeeeecceEEcCCCCcccCCCcccccccccccceEE-eeceEEE
Q 010738 275 RIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI 318 (502)
Q Consensus 275 ~IvCPYHGW~FdldG~cv~vP~~~~~~~~L~~~pV~e-~~G~IwV 318 (502)
.|.||||||+||.+|+++..|.. ..|..+|+++ .+|.|+|
T Consensus 155 ~~~CP~HGs~FD~~G~v~~gPa~----~~L~~~p~~v~~d~~I~v 195 (196)
T 1pp9_E 155 GYYCPCHGSHYDASGRIRKGPAP----LNLEVPSYEFTSDDMVIV 195 (196)
T ss_dssp SEEETTTTEEECTTCCEEESSCC----SCCCCCCEEEETTTEEEE
T ss_pred EEEeCCCCCEECCCCCCccCCCC----CCCcceeEEEEECCEEEE
Confidence 99999999999999999999874 4789999998 7899987
No 34
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=99.71 E-value=2.2e-17 Score=150.19 Aligned_cols=93 Identities=19% Similarity=0.233 Sum_probs=83.4
Q ss_pred eecCCCCCCCceeEeeCCeeEEEEEcC----------------------------------------CCceEEEeecCCC
Q 010738 222 AFSTDLKDDTMVPFDCFEEPWVIFRGK----------------------------------------DGIPGCVQNTCAH 261 (502)
Q Consensus 222 ~~~seL~~g~~~~~~l~G~~IVV~R~~----------------------------------------dG~v~A~~N~CpH 261 (502)
...++|++|+.+++...|.|++|.|.. +|+++|+.|+|||
T Consensus 6 vd~s~l~~g~~~~v~wrgkPv~i~~rt~~~~~~~~~~~~~~l~Dp~~~~~~~p~~~y~~~~~R~~~~~g~~~a~~~~C~H 85 (141)
T 2nwf_A 6 VDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTH 85 (141)
T ss_dssp EECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTSCEEEEECCCTT
T ss_pred EecccCCCCCEEEEEECCEEEEEEECCHHHHhhhhcccccccCCcccccccCCccccccchhccccCCCcEEEEeCcCCC
Confidence 467899999999999999999999851 7899999999999
Q ss_pred CCCCCCC-CCccceeeeeeecceEEcCCCCcccCCCcccccccccccceEE-eeceEEE
Q 010738 262 RACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI 318 (502)
Q Consensus 262 RGa~Ls~-G~v~~~~IvCPYHGW~FdldG~cv~vP~~~~~~~~L~~~pV~e-~~G~IwV 318 (502)
+|++|+. +.++++.|.||||||+||.+|+++..|+. ..|..||+++ .+|.|+|
T Consensus 86 ~G~~l~~~~~~~~~~~~CP~Hgs~Fd~~G~~~~gPa~----~~L~~~pv~v~~d~~i~v 140 (141)
T 2nwf_A 86 LGCVPIGGVSGDFGGWFCPCHGSHWDSAGRIRKGPAP----ENLPIPLAKFIDETTIQL 140 (141)
T ss_dssp TCCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCC----SCCCBCSEEESSSSEEEE
T ss_pred CCeEccccCccCCCEEEcCCCCCEECCCCCCccCCCC----CCCCceeEEEEECCEEEE
Confidence 9999998 66666899999999999999999999874 4789999998 7999987
No 35
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A
Probab=99.70 E-value=1.7e-17 Score=154.63 Aligned_cols=99 Identities=20% Similarity=0.280 Sum_probs=80.6
Q ss_pred eecCCCCCCCceeEeeCCee-------------EEEEEc-------------CCCceEEEeecCCCCCCCCCCCCcccee
Q 010738 222 AFSTDLKDDTMVPFDCFEEP-------------WVIFRG-------------KDGIPGCVQNTCAHRACPLHLGSVNEGR 275 (502)
Q Consensus 222 ~~~seL~~g~~~~~~l~G~~-------------IVV~R~-------------~dG~v~A~~N~CpHRGa~Ls~G~v~~~~ 275 (502)
...++|++|+.+.+.+-|.+ +++.|- .+| ++|+.|+|||+|++|+.|.++++.
T Consensus 25 v~~sdl~~G~~~~~~~~g~p~~~~~r~~~~~~~~~~~~~~p~~~~~~~~~~~~~g-v~A~~~~CpH~G~~L~~g~~~~~~ 103 (165)
T 1nyk_A 25 IRLEELKPGDPFVLAYPMDPKTKVVKSGEAKNTLLVARFDPEELAPEVAQHAAEG-VVAYSAVCTHLGCIVSQWVADEEA 103 (165)
T ss_dssp CBGGGCCTTSCCEEEEEECTTTCCBCTTSGGGCEEEEECCGGGSCHHHHTTCBTT-EEEEECBCTTTCCBCCEEEGGGTE
T ss_pred ecHHHCCCCCEEEEEeCCCcchhhccCcchhcchheeccChhhcCccccccccCC-EEEEEeecCCCCeEcccccCCCCE
Confidence 36778888877777653333 555564 355 999999999999999988888889
Q ss_pred eeeeecceEEcCC-CC-cccCCCcccccccccccceEEeeceEEEecCCCCC
Q 010738 276 IQCPYHGWEYSTD-GK-CEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 325 (502)
Q Consensus 276 IvCPYHGW~Fdld-G~-cv~vP~~~~~~~~L~~~pV~e~~G~IwV~lg~~~p 325 (502)
|+||||||+||.+ |. |+..|+. ..|+.|++++++|.|||+++...+
T Consensus 104 i~CP~Hgs~Fd~~tG~~~~~gPa~----~~L~~~~v~v~~g~V~v~~~~~~~ 151 (165)
T 1nyk_A 104 ALCPCHGGVYDLRHGAQVIAGPPP----RPVPQLPVRVEDGVLVAAGEFLGP 151 (165)
T ss_dssp EECTTTCCEEEGGGTTEEEESSCS----SCCCEECEEEETTEEEECSSCSSC
T ss_pred EECCCCCCEEcCCCCCeeecCCCC----CCCcEEEEEEECCEEEEEecCccc
Confidence 9999999999984 86 9999873 579999999999999999876654
No 36
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=99.67 E-value=1.1e-17 Score=157.40 Aligned_cols=92 Identities=18% Similarity=0.325 Sum_probs=81.6
Q ss_pred cCCCCCCCceeEe-eCCeeEEEEEcCCCce--EEEeecCCCCCCCCCCCCccceeeeeeecceEEcCCCCcccCCCcccc
Q 010738 224 STDLKDDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 300 (502)
Q Consensus 224 ~seL~~g~~~~~~-l~G~~IVV~R~~dG~v--~A~~N~CpHRGa~Ls~G~v~~~~IvCPYHGW~FdldG~cv~vP~~~~~ 300 (502)
.++|++|+...+. +.|++++++|+.+|++ +|+.|+|||+||+|+.+. .++.|.||||||+||.+|+|+..|..
T Consensus 70 ~~~l~~g~~~~~~~~~g~~~~lv~~~~g~~~~~a~~~~CtH~G~~l~~~~-~~~~~~CP~Hgs~Fd~~G~~~~gPa~--- 145 (179)
T 1vf5_D 70 LESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNA-AENKFKCPCHGSQYDETGRVIRGPAP--- 145 (179)
T ss_dssp HHCCCTTCCCEESCSSSSCEECCBCTTCCBCSCCCBCBCTTTSCBCCBCS-SSSSEECTTTCCEECSSSCCCSSSCC---
T ss_pred ccccCCCceEEEeccCCCeEEEEEECCCcEEEEEEeCccCCCCCCCcccC-CCCEEECCCCCCEECCCCcEecCCCC---
Confidence 4678888777776 7789999999899998 999999999999999876 46789999999999999999999873
Q ss_pred cccccccceEEeeceEEEec
Q 010738 301 NVKIKSLPCFEQEGMIWIWP 320 (502)
Q Consensus 301 ~~~L~~~pV~e~~G~IwV~l 320 (502)
..|+.|++++++|.|||.+
T Consensus 146 -~~L~~~~v~v~~g~v~v~~ 164 (179)
T 1vf5_D 146 -LSLALCHATVQDDNIVLTP 164 (179)
T ss_dssp -SCCBCCCCCCSSSSCCCCC
T ss_pred -CCCCeEEEEEECCEEEEEe
Confidence 5799999999999999965
No 37
>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1
Probab=99.56 E-value=2e-16 Score=152.06 Aligned_cols=84 Identities=18% Similarity=0.280 Sum_probs=72.0
Q ss_pred eeEeeCCeeEEEEEcC------------CCceEEEeecCCCCCCCCCCCC-----------ccceeeeeeecceEEcCC-
Q 010738 233 VPFDCFEEPWVIFRGK------------DGIPGCVQNTCAHRACPLHLGS-----------VNEGRIQCPYHGWEYSTD- 288 (502)
Q Consensus 233 ~~~~l~G~~IVV~R~~------------dG~v~A~~N~CpHRGa~Ls~G~-----------v~~~~IvCPYHGW~Fdld- 288 (502)
+.+++.+.+++++|.. +|+++|+.|+|||+|++|+.|. ..++.|.||||||+||.+
T Consensus 56 ~~v~v~~~~i~v~r~~~~~~r~~ggvg~~g~i~A~~n~CpH~G~~L~~g~~~p~~~~~~~~~~~~~i~CP~Hgs~FDl~t 135 (204)
T 1jm1_A 56 QITEIPNPYYGKYAGPLGQIQTIKGVGPNGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKD 135 (204)
T ss_dssp CCCEEECTTTTSSCTTGGGCCEEECBTTTTCEEEEESBCTTTCCBCCTTEEESSTTSSEEETTTTEEECTTTCCEEEGGG
T ss_pred ceEeeCCceEEEEecCccccccccccccCCEEEEEeCcCCCCCcCccccccccccccccccCCCCEEECCCCCCEEeCCC
Confidence 5677888888888876 7999999999999999999874 256789999999999986
Q ss_pred -CCcccCCCcccccccccccceEEe--eceEEEec
Q 010738 289 -GKCEKMPSTQLRNVKIKSLPCFEQ--EGMIWIWP 320 (502)
Q Consensus 289 -G~cv~vP~~~~~~~~L~~~pV~e~--~G~IwV~l 320 (502)
|+|+..|+. ..|+.|++.+. +|.||+..
T Consensus 136 GG~v~~gPa~----~~L~~~~v~v~~~~g~v~v~g 166 (204)
T 1jm1_A 136 GGVVVSGPAP----RPLPIVILDYDSSTGDIYAVG 166 (204)
T ss_dssp TSEEEESSCC----SCCCBEEEEECTTTCEEEEEE
T ss_pred CCeEecCCCC----CCCCeEeeEEEecCCEEEEEe
Confidence 799998874 46888888876 89999974
No 38
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=76.13 E-value=6.3 Score=31.67 Aligned_cols=57 Identities=32% Similarity=0.468 Sum_probs=49.2
Q ss_pred eccccchhhHHHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 010738 88 CDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVAT 150 (502)
Q Consensus 88 ~~~~~~~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~ 150 (502)
-||-.|.=+-.|-.-=.|+++-||..+- .-+..|+.|.+.|.+...++-+.||+|++
T Consensus 14 ~DW~nRe~ie~is~~I~~~v~FLN~F~~------sce~KLa~ln~kL~~lE~~L~iLEAklsS 70 (73)
T 3pp5_A 14 KDWEQREFIEDMSINIQKIVEFLNKFEL------STRNKLSDLNEKLTILDRQVDYLEATFKT 70 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4899998877777777899999997753 46789999999999999999999999984
No 39
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=72.97 E-value=11 Score=35.66 Aligned_cols=86 Identities=19% Similarity=0.244 Sum_probs=49.0
Q ss_pred ceeehhhHHHHhh-------hccceeccccc------h--hhH-HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHH
Q 010738 70 KFLDVNQALEVAR-------YDIQYCDWRAR------Q--DVL-TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQED 133 (502)
Q Consensus 70 ~~~~~~~~~~~~~-------~~~~~~~~~~~------~--d~~-~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~lq~~ 133 (502)
+|-.+|+|.++++ ||.+.-.+... . +.| .+|++++.+.++=+. ..+..|++++.+.+++
T Consensus 92 ~f~~In~AY~vLsdp~~R~~Yd~~l~G~~~~~e~~~~~d~~fLme~me~~E~le~~~~~-----~~l~~l~~~~~~~~~~ 166 (207)
T 3bvo_A 92 HSTLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESE-----AAMKEIESIVKAKQKE 166 (207)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHHTTCCCCSSCSSSSCHHHHHHHHHHHHHHHHCCSH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHhcCCCcccccccCCCHHHHHHHHHHHHHHHHccCH-----HHHHHHHHHHHHHHHH
Confidence 6789999999985 44332222211 1 355 499999999986543 2256666666665555
Q ss_pred HH----HHHHHHHhhHHHHHHHHhhHHHHHHHH
Q 010738 134 LA----QAHRQVHISEARVATALDKLAYMEALV 162 (502)
Q Consensus 134 ~~----~ah~~~~~s~~rv~~~l~~~~~me~l~ 162 (502)
+. +|=.+-.. ......+.|+-++.++.
T Consensus 167 ~~~~l~~~~~~~d~--~~A~~~v~kL~y~~kl~ 197 (207)
T 3bvo_A 167 FTDNVSSAFEQDDF--EEAKEILTKMRYFSNIE 197 (207)
T ss_dssp HHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHH
Confidence 43 33322122 22335666777765543
No 40
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=70.27 E-value=6.1 Score=31.91 Aligned_cols=57 Identities=30% Similarity=0.463 Sum_probs=49.0
Q ss_pred eccccchhhHHHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 010738 88 CDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVAT 150 (502)
Q Consensus 88 ~~~~~~~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~ 150 (502)
-||-.|+=+-.|-..=.++++-||..+- .-+..|+.|.+.|.+...++-+.||+|+.
T Consensus 14 ~DW~nRe~ie~in~~I~~~v~FLN~F~~------sce~KLa~ln~KL~~LEr~L~iLEAklss 70 (75)
T 3p8c_E 14 QDWANREYIEIITSSIKKIADFLNSFDM------SCRSRLATLNEKLTALERRIEYIEARVTK 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4899998887777777899999998753 45788999999999999999999999974
No 41
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=68.96 E-value=20 Score=33.17 Aligned_cols=90 Identities=14% Similarity=0.263 Sum_probs=50.6
Q ss_pred cCCceeehhhHHHHhh-------hccce-eccccch------------h-hHHHHHHHHHHHHhhChhhhhccchhhH--
Q 010738 67 CKGKFLDVNQALEVAR-------YDIQY-CDWRARQ------------D-VLTIMLLHEKVVEVLNPLARDYKSIGTM-- 123 (502)
Q Consensus 67 ~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~------------d-~~~~~~~~~~v~~~l~~~~~~~~~~~~~-- 123 (502)
..-+|..+|+|.+++. ||.+- -.....+ + |..+|++|+++.|.=+... +..|
T Consensus 54 a~~~f~~i~~AY~vL~dp~~R~~Yd~~l~~g~~~~~e~~~~~~~~~d~~fLme~me~rE~leea~~~~~-----l~~l~~ 128 (181)
T 3uo3_A 54 GSEQSSTLNQAYHTLKDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELSQMDDEAG-----VKLLEK 128 (181)
T ss_dssp CSSGGGSHHHHHHHHHSHHHHHHHHHHHHHCCCTTSHHHHHHHHHTCHHHHHHHHHHHHHHHHCCSHHH-----HHHHHH
T ss_pred HHHHHHHHHHHHHHHcChHHHHHHHHHHHhCCCccccccccccccCCHHHHHHHHHHHHHHHhccCHHH-----HHHHHH
Confidence 6778999999999975 55543 2222111 2 3388999999998633221 2333
Q ss_pred --HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHh
Q 010738 124 --KKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVN 163 (502)
Q Consensus 124 --~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~me~l~~ 163 (502)
++++..+.++|.+|=.+-...+ ....+.||-+++++.+
T Consensus 129 ~~~~~~~~~~~~l~~~~~~~d~~~--A~~~~~kL~y~~kl~~ 168 (181)
T 3uo3_A 129 QNKERIQDIEAQLGQCYNDKDYAA--AVKLTVELKYWYNLAK 168 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHH--HHHHHHHHHHHHHHHH
Confidence 3334444444444444332222 2355667777666544
No 42
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=68.91 E-value=10 Score=34.70 Aligned_cols=90 Identities=17% Similarity=0.246 Sum_probs=50.0
Q ss_pred CceeehhhHHHHhh-------hccceeccccch--------hhH-HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHH
Q 010738 69 GKFLDVNQALEVAR-------YDIQYCDWRARQ--------DVL-TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQE 132 (502)
Q Consensus 69 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~--------d~~-~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~lq~ 132 (502)
-+|--+|+|.+++. ||...--..... +.| .+|++++++.|+-+. .+...+..|++++...++
T Consensus 49 ~~f~~In~AY~vL~dp~~R~~Yd~~l~g~~~~~e~~~~~d~~fLme~me~rE~lee~~~~--~d~~~l~~l~~~~~~~~~ 126 (171)
T 1fpo_A 49 QQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQA--KDEARLESFIKRVKKMFD 126 (171)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHTTTCCTTCSSSCCSCHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHhcCCCccccccccCCHHHHHHHHHHHHHHHHhhcc--CCHHHHHHHHHHHHHHHH
Confidence 37899999999986 443322222222 245 499999999987542 222335566655555433
Q ss_pred HH----HHHHHHHHhhHHHHHHHHhhHHHHHHHH
Q 010738 133 DL----AQAHRQVHISEARVATALDKLAYMEALV 162 (502)
Q Consensus 133 ~~----~~ah~~~~~s~~rv~~~l~~~~~me~l~ 162 (502)
++ .+|=..-...+ ....+.|+-++.++.
T Consensus 127 ~~~~~l~~~~~~~~~~~--A~~~~~kl~y~~kl~ 158 (171)
T 1fpo_A 127 TRHQLMVEQLDNETWDA--AADTCRKLRFLDKLR 158 (171)
T ss_dssp HHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcHHH--HHHHHHHHHHHHHHH
Confidence 33 34433323322 224566777765544
No 43
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=55.03 E-value=33 Score=31.27 Aligned_cols=91 Identities=19% Similarity=0.235 Sum_probs=50.0
Q ss_pred CceeehhhHHHHhh-------hccceeccccch------h---hHHHHHHHHHHHHhhChhhhh-ccchhhHHHHHHH--
Q 010738 69 GKFLDVNQALEVAR-------YDIQYCDWRARQ------D---VLTIMLLHEKVVEVLNPLARD-YKSIGTMKKELAE-- 129 (502)
Q Consensus 69 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~------d---~~~~~~~~~~v~~~l~~~~~~-~~~~~~~~~~~~~-- 129 (502)
-+|.-+|+|.++++ ||.+--...... | +..+|++|+++.++-+. .+ ..++..|++++..
T Consensus 52 ~~f~~In~AY~vL~dp~~R~~Yd~~l~g~~~~~e~~~~~d~~fLme~me~rE~le~~~~~--~d~~~~l~~l~~~~~~~~ 129 (174)
T 3hho_A 52 QQAAQINDAYQTLKDPLRRAEYLLSLQGIEMNAEQQTLQDPMFLMEQMELREELESVTAC--ADPEAALVAFDTKVTAMQ 129 (174)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHHTTCCCC----CCCCHHHHHHHHHHHHHHHHHTSS--SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcChHHHHHHHHHccCCCcccccCCCCCHHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHH
Confidence 57889999999976 444333333222 2 33889999999987432 11 1224444444443
Q ss_pred --HHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHh
Q 010738 130 --LQEDLAQAHRQVHISEARVATALDKLAYMEALVN 163 (502)
Q Consensus 130 --lq~~~~~ah~~~~~s~~rv~~~l~~~~~me~l~~ 163 (502)
+.+++.+|=.+-...+| ...+.|+-++.++.+
T Consensus 130 ~~~~~~l~~~~~~~d~~~A--~~~~~kL~f~~kl~~ 163 (174)
T 3hho_A 130 RHYLAQLQGQLAQSEWLAA--ADQIRKLKFIAKLKN 163 (174)
T ss_dssp HHHHHHHHHHHHTTCHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHH--HHHHHHHHHHHHHHH
Confidence 34444444443333333 244677777765543
No 44
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=47.55 E-value=27 Score=27.69 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=34.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhH-----HHHHHHHhhHHHHHHHHhhh
Q 010738 118 KSIGTMKKELAELQEDLAQAHRQVHISE-----ARVATALDKLAYMEALVNDR 165 (502)
Q Consensus 118 ~~~~~~~~~~~~lq~~~~~ah~~~~~s~-----~rv~~~l~~~~~me~l~~~~ 165 (502)
+|...|.++|.+|.+||.+-.-|-.+.+ +++...-...|++....+.+
T Consensus 9 ~s~~EL~~~L~elk~ELf~LR~q~atgq~l~n~~~ir~vRr~IARi~Tvl~er 61 (72)
T 3j21_W 9 MSIEEIDAKIRELRLQLAKERGLLTMGTSLENPMVIRNLRRDIARLLTIKKEK 61 (72)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999888877765 45555555555555555433
No 45
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=46.69 E-value=52 Score=33.89 Aligned_cols=60 Identities=17% Similarity=0.181 Sum_probs=40.5
Q ss_pred HHHHHHHHhhChhhhhc---cchhhHHHHHHHHHHHHHHHHHHHH-----------hhHHHHHHHHhhHHHHHH
Q 010738 101 LLHEKVVEVLNPLARDY---KSIGTMKKELAELQEDLAQAHRQVH-----------ISEARVATALDKLAYMEA 160 (502)
Q Consensus 101 ~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~lq~~~~~ah~~~~-----------~s~~rv~~~l~~~~~me~ 160 (502)
.+.+++.+.|+....+. .-..-|++||.++|+-++++..|-. ..|+.||+.+.|..++|.
T Consensus 377 ~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (471)
T 3mq9_A 377 DAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEG 450 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555554443331 2234589999999999999888753 357888898888888773
No 46
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=42.48 E-value=76 Score=25.86 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhChhhhhccchhhHHHHHHHHHHH--------------HHHHHHHHHhhHHHHHHHHhh
Q 010738 100 MLLHEKVVEVLNPLARDYKSIGTMKKELAELQED--------------LAQAHRQVHISEARVATALDK 154 (502)
Q Consensus 100 ~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~lq~~--------------~~~ah~~~~~s~~rv~~~l~~ 154 (502)
..|..||-..+..++-=++=|..||.+-..|.+| ..+-.++-+.=+.|+..-|+|
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567777777776666555666666666664444 333444444445555555555
No 47
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=42.26 E-value=74 Score=26.53 Aligned_cols=36 Identities=22% Similarity=0.232 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Q 010738 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLA 156 (502)
Q Consensus 121 ~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~ 156 (502)
..|.+.+..|+++|-++..++..+...++..-.+.+
T Consensus 47 ~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~ 82 (101)
T 3u1c_A 47 VQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAA 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443333333
No 48
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=40.15 E-value=40 Score=25.17 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=21.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 010738 120 IGTMKKELAELQEDLAQAHRQVHISEARVA 149 (502)
Q Consensus 120 ~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~ 149 (502)
+..||.|+++||.++..-..+..-..+++.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888888888887777776666665543
No 49
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=39.53 E-value=86 Score=25.97 Aligned_cols=37 Identities=14% Similarity=0.237 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Q 010738 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLA 156 (502)
Q Consensus 120 ~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~ 156 (502)
|..|++.+..|++++-++..++..+...+...-.++.
T Consensus 46 i~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~ 82 (101)
T 3u59_A 46 QQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKAT 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666655555554444444
No 50
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=39.14 E-value=54 Score=30.73 Aligned_cols=56 Identities=14% Similarity=0.128 Sum_probs=35.3
Q ss_pred HHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHH
Q 010738 102 LHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (502)
Q Consensus 102 ~~~~v~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~ 157 (502)
+|.-|-.+.++..+=..-+.+...|+..||++++.+.+|...++.+.++.+.-.--
T Consensus 18 ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i 73 (190)
T 4emc_A 18 ADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEV 73 (190)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhH
Confidence 44445555554444444456777888888888888888887777777655444433
No 51
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=38.20 E-value=1.1e+02 Score=26.90 Aligned_cols=49 Identities=14% Similarity=0.204 Sum_probs=30.9
Q ss_pred hhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHH
Q 010738 112 PLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEA 160 (502)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~me~ 160 (502)
.+..--+-+-.||.+|..+|.++..+..++--.+.++..-..+...||.
T Consensus 83 ~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 83 DIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344466677777777777777777766666666666666666653
No 52
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=37.09 E-value=1.1e+02 Score=25.51 Aligned_cols=54 Identities=11% Similarity=0.210 Sum_probs=37.0
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHH------HHHhhHHH
Q 010738 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVA------TALDKLAY 157 (502)
Q Consensus 101 ~~~~~v~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~------~~l~~~~~ 157 (502)
.-..+..+-+..|-| =+..|..+|..+++.|..|..++-.++.+.+ .+|+|..+
T Consensus 37 ~~~~~~E~Ei~sL~k---k~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriq 96 (101)
T 3u1c_A 37 ERSKQLEDDIVQLEK---QLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444433 3667889999999999999998888888777 45655555
No 53
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=36.68 E-value=41 Score=25.04 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=28.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhH
Q 010738 119 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKL 155 (502)
Q Consensus 119 ~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~ 155 (502)
||..|.|++..|.++|..+..+--.....+.++++-+
T Consensus 13 sV~KLek~ID~LEdeL~~eKek~~~i~~eLD~tl~el 49 (52)
T 2z5i_A 13 EVARLKKLVDDLEDELYAQKLKYKAISEELDHALNDM 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999988877766666777766544
No 54
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=36.19 E-value=35 Score=23.88 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=20.7
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHH
Q 010738 114 ARDYKSIGTMKKELAELQEDLAQAHRQVH 142 (502)
Q Consensus 114 ~~~~~~~~~~~~~~~~lq~~~~~ah~~~~ 142 (502)
..|.++.+..|+|+..|+.+|+.-.+.-|
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKH 32 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKH 32 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888877776665555
No 55
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=35.48 E-value=9 Score=36.25 Aligned_cols=63 Identities=27% Similarity=0.434 Sum_probs=40.1
Q ss_pred eeeeeeecCCCCCCCCcCCceeehhhHHHH--hhhccceeccccchhhHHHHHHHHHHHHhhChhhhhccchhhHHHHHH
Q 010738 51 WSTLFDVEDPRSKVPQCKGKFLDVNQALEV--ARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELA 128 (502)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~ 128 (502)
-..+|.-||||- .|-||=.- --||+.|+|- -.--+.+...|..+-.-+.-|.|||+||+
T Consensus 62 lnqifnkedpry----------evvqagasaahdfdvryldi---------hkhgreiarllekiqkyfQ~IEtlK~ql~ 122 (294)
T 3caz_A 62 LNQIFNKEDPRY----------EVVQAGASAAHDFDVRYLDI---------HKHGREIARLLEKIQKYRQEIEEIKKEYK 122 (294)
T ss_dssp HTSSCCSCCTTH----------HHHHHHHHHHHHHHHHHHHH---------HHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCcch----------HHHHcccccccccchhhhhH---------HhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456899999984 34454433 3577888873 22223344444445555667899999998
Q ss_pred HHHH
Q 010738 129 ELQE 132 (502)
Q Consensus 129 ~lq~ 132 (502)
+.|+
T Consensus 123 nf~e 126 (294)
T 3caz_A 123 ETDK 126 (294)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 8775
No 56
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=34.45 E-value=1.3e+02 Score=22.34 Aligned_cols=39 Identities=10% Similarity=0.132 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHH
Q 010738 124 KKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALV 162 (502)
Q Consensus 124 ~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~me~l~ 162 (502)
..++++||.++.....|-+....-+..+-+++..|.+-+
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888877777777777777777777766543
No 57
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=33.40 E-value=79 Score=25.75 Aligned_cols=38 Identities=13% Similarity=0.266 Sum_probs=30.6
Q ss_pred hhhHHHHHHHHHHH----------HHHHHHHHHhhHHHHHHHHhhHHH
Q 010738 120 IGTMKKELAELQED----------LAQAHRQVHISEARVATALDKLAY 157 (502)
Q Consensus 120 ~~~~~~~~~~lq~~----------~~~ah~~~~~s~~rv~~~l~~~~~ 157 (502)
+..|+.+++.|+.. +..++.+++.+...+...|+.++.
T Consensus 34 l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~~ 81 (103)
T 4i0x_B 34 LDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQMEE 81 (103)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777766 888899999999999888888777
No 58
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=33.18 E-value=19 Score=25.00 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=19.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhh
Q 010738 119 SIGTMKKELAELQEDLAQAHRQVHIS 144 (502)
Q Consensus 119 ~~~~~~~~~~~lq~~~~~ah~~~~~s 144 (502)
++..||+.+..||.|+.+|..++-..
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~~ 30 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVARL 30 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999998888877766544
No 59
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=32.78 E-value=57 Score=20.66 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 010738 121 GTMKKELAELQEDLAQAHRQV 141 (502)
Q Consensus 121 ~~~~~~~~~lq~~~~~ah~~~ 141 (502)
..|-|||..|||.|.+-..++
T Consensus 4 delykeledlqerlrklrkkl 24 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 357789999999988776654
No 60
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=32.37 E-value=64 Score=34.78 Aligned_cols=42 Identities=10% Similarity=0.288 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHh
Q 010738 122 TMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVN 163 (502)
Q Consensus 122 ~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~me~l~~ 163 (502)
.|+++++.|++++..-=.++...|+.|..-+.|+-.||.-+.
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888899988887778888888888888877777664333
No 61
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=32.20 E-value=1.1e+02 Score=24.38 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHhhHHH
Q 010738 120 IGTMKKELAELQEDLAQAHRQVHISEARVA---TALDKLAY 157 (502)
Q Consensus 120 ~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~---~~l~~~~~ 157 (502)
-.+++..|+.||+||-.-.++++..+.++. .+..|+.+
T Consensus 13 ~~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLND 53 (75)
T 3a7o_A 13 DDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLND 53 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhH
Confidence 345666677777777666666666666654 45555544
No 62
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=31.85 E-value=26 Score=26.40 Aligned_cols=33 Identities=21% Similarity=0.431 Sum_probs=18.6
Q ss_pred HHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHH
Q 010738 105 KVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQ 140 (502)
Q Consensus 105 ~v~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~ 140 (502)
.|-+.|..++.++. +|.+|..+|++++.++..+
T Consensus 24 EVD~FLd~v~~~~~---~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 24 EVNEFLAQVRKDYE---IVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhc
Confidence 45555666665543 6677777777777766554
No 63
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=30.84 E-value=66 Score=28.54 Aligned_cols=43 Identities=21% Similarity=0.337 Sum_probs=33.8
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHH
Q 010738 114 ARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (502)
Q Consensus 114 ~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~ 157 (502)
++.-.....||+|+++|++++.+...|+- +++.+..-|+.+++
T Consensus 11 ~~~aa~L~~l~~ql~~l~~~l~~l~~~LP-~~~em~~LL~~i~~ 53 (147)
T 2rjz_A 11 AFQAANLEAYKAQMKEMEESFGALLRQLP-SDTEVPGLLEDITR 53 (147)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHHHHHHTTT-GGGHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhCC-ChhHHHHHHHHHHH
Confidence 33445678899999999999999988886 77777777776665
No 64
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=29.82 E-value=1.7e+02 Score=24.17 Aligned_cols=57 Identities=12% Similarity=0.198 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHH------HHHhhHHH
Q 010738 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVA------TALDKLAY 157 (502)
Q Consensus 98 ~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~------~~l~~~~~ 157 (502)
....-..++.+-+..|-|- +..|..++...++.|..|+..+-.++.+.+ .+|+|..+
T Consensus 34 ~~e~~~~~~E~ei~sL~kK---iq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriq 96 (101)
T 3u59_A 34 QAEDRCKQLEEEQQGLQKK---LKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555443 568889999999999999988888887777 55666555
No 65
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=29.68 E-value=88 Score=32.49 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHhhhh
Q 010738 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRL 166 (502)
Q Consensus 121 ~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~me~l~~~~~ 166 (502)
.+|++||.+|+++..+-.++.+..++.+...-+++.+ ++..|+++
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~-~~~~rr~l 50 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ-SNMERKEL 50 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 5788888888888888888888888877777777666 34444444
No 66
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=28.95 E-value=1.1e+02 Score=26.73 Aligned_cols=48 Identities=17% Similarity=0.251 Sum_probs=34.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhH-----HHHHHHHhhHHHHHHHHhhh
Q 010738 118 KSIGTMKKELAELQEDLAQAHRQVHISE-----ARVATALDKLAYMEALVNDR 165 (502)
Q Consensus 118 ~~~~~~~~~~~~lq~~~~~ah~~~~~s~-----~rv~~~l~~~~~me~l~~~~ 165 (502)
+|...|.++|.+|.+||..-.-|-.+.+ +++...-..+|++..+.+.+
T Consensus 12 ~s~eEL~~~L~eLK~ELf~LRfq~atgq~len~~rir~vRrdIARI~Tvl~er 64 (123)
T 2zkr_v 12 KKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQT 64 (123)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999998877766652 45555555566665555433
No 67
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=28.08 E-value=1.3e+02 Score=23.16 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=28.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHhhHHHHHHHHh
Q 010738 118 KSIGTMKKELAELQEDLAQAHRQVHISE----ARVATALDKLAYMEALVN 163 (502)
Q Consensus 118 ~~~~~~~~~~~~lq~~~~~ah~~~~~s~----~rv~~~l~~~~~me~l~~ 163 (502)
+|...|.++|.+|.+||..-.-|-.+.+ +|+...-...|++....+
T Consensus 9 ~s~~EL~~~l~elk~ELf~LR~q~atgql~n~~~ir~vRr~IARi~Tvl~ 58 (66)
T 1r73_A 9 YTDEELKNLLEEKKRQLMELRFQLAMGQLKNTSLIKLTKRDIARIKTILR 58 (66)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHccCccCcHHHHHHHHHHHHHHHHHH
Confidence 5688899999999999887766655432 233344444444444443
No 68
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=27.82 E-value=1.2e+02 Score=26.49 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=21.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhh
Q 010738 118 KSIGTMKKELAELQEDLAQAHRQVHIS 144 (502)
Q Consensus 118 ~~~~~~~~~~~~lq~~~~~ah~~~~~s 144 (502)
+|...|.++|.+|.+||..-.-|-.+.
T Consensus 13 ~s~eEL~~~L~eLK~ELf~LRfq~atg 39 (124)
T 4a17_U 13 QTEEQLVGELGKLQTELSQLRIAKIAG 39 (124)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 568889999999999998877666554
No 69
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=26.62 E-value=1.7e+02 Score=23.36 Aligned_cols=55 Identities=11% Similarity=0.111 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhChhhhhccch--------hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 010738 100 MLLHEKVVEVLNPLARDYKSI--------GTMKKELAELQEDLAQAHRQVHISEARVATALDK 154 (502)
Q Consensus 100 ~~~~~~v~~~l~~~~~~~~~~--------~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~ 154 (502)
+..|...++.+|..+.+...- ..++++|..|.+.+..-..++.-=..++..+|.+
T Consensus 52 i~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L~~aL~~ 114 (118)
T 3uul_A 52 LSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWEALRVESMERQSRLHDALME 114 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777665322 2466667777666666666555555555555543
No 70
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=25.93 E-value=1.4e+02 Score=23.67 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 010738 121 GTMKKELAELQEDLAQAH 138 (502)
Q Consensus 121 ~~~~~~~~~lq~~~~~ah 138 (502)
..|.++|..+|||++++.
T Consensus 14 eel~~klk~~~ee~~~~~ 31 (71)
T 1uix_A 14 EELNNKLKEAQEQLSRLK 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456667777777777665
No 71
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=25.88 E-value=94 Score=27.49 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHH
Q 010738 122 TMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (502)
Q Consensus 122 ~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~m 158 (502)
.+++++..|-.||..+..+.-.++..++....+...+
T Consensus 86 ~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l 122 (138)
T 3hnw_A 86 NKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKY 122 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444443
No 72
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=25.59 E-value=2e+02 Score=22.47 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=29.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHh-hH----HHHHHHHhhHHHHHHHHh
Q 010738 118 KSIGTMKKELAELQEDLAQAHRQVHI-SE----ARVATALDKLAYMEALVN 163 (502)
Q Consensus 118 ~~~~~~~~~~~~lq~~~~~ah~~~~~-s~----~rv~~~l~~~~~me~l~~ 163 (502)
+|...|.++|.+|..||..-+-|-.+ .+ +|+...-...|++....+
T Consensus 12 ~s~~EL~~~l~elk~ELf~LR~q~atggql~n~~~ir~vRr~IARi~Tvl~ 62 (71)
T 1vq8_V 12 MTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTIQG 62 (71)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCccChHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999887766555 21 244444444555544444
No 73
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=25.32 E-value=98 Score=26.90 Aligned_cols=42 Identities=21% Similarity=0.296 Sum_probs=28.1
Q ss_pred HHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 010738 106 VVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVA 149 (502)
Q Consensus 106 v~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~ 149 (502)
-|+-|+.---+-||.+ .+++.+||+|+..-.++++-.++-|+
T Consensus 54 TV~tL~~SL~~ekaq~--q~~vqeLqgEI~~Lnq~Lq~a~ae~e 95 (121)
T 3mq7_A 54 TVMALMASLDAEKAQG--QKKVEELEGEITTLNHKLQDASAEVE 95 (121)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334443333445566 67799999999988888887766554
No 74
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=24.80 E-value=1.8e+02 Score=22.90 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=22.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhh
Q 010738 118 KSIGTMKKELAELQEDLAQAHRQVHIS 144 (502)
Q Consensus 118 ~~~~~~~~~~~~lq~~~~~ah~~~~~s 144 (502)
+|...|.++|.+|.+||.+-.-|-.+.
T Consensus 16 ~s~eEL~~~L~elk~ELf~LR~q~atg 42 (72)
T 3v2d_2 16 LSPVELEKLVREKKRELMELRFQASIG 42 (72)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999887776554
No 75
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=24.54 E-value=1.2e+02 Score=31.17 Aligned_cols=46 Identities=24% Similarity=0.317 Sum_probs=31.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHhhhh
Q 010738 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRL 166 (502)
Q Consensus 120 ~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~me~l~~~~~ 166 (502)
+..|+.+|+.|+++..+-..+++..++++...-.++...| ..|+++
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~rr~l 50 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEE-TVRRTL 50 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 4567778888888888888888877777776666666533 334444
No 76
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=24.04 E-value=1.7e+02 Score=27.96 Aligned_cols=70 Identities=13% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh----hHHHHHHHHhhhhhc
Q 010738 99 IMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALD----KLAYMEALVNDRLLQ 168 (502)
Q Consensus 99 ~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~----~~~~me~l~~~~~l~ 168 (502)
|..+.+++.|++..+..-.+.+..++.+++.+++++..+...+--..+.+...+. +...+..-+...+|.
T Consensus 106 i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~~~lL~ 179 (256)
T 3na7_A 106 SNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPKIYS 179 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
No 77
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=23.87 E-value=2.6e+02 Score=22.00 Aligned_cols=27 Identities=11% Similarity=0.276 Sum_probs=12.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHH
Q 010738 120 IGTMKKELAELQEDLAQAHRQVHISEA 146 (502)
Q Consensus 120 ~~~~~~~~~~lq~~~~~ah~~~~~s~~ 146 (502)
|..|++.+..|+++|-++..++..+..
T Consensus 43 v~~L~kKiq~lE~eld~~ee~l~~a~~ 69 (81)
T 1ic2_A 43 LVALQKKLKGTEDELDKYSESLKDAQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455444444444443333
No 78
>3iz5_c 60S ribosomal protein L35 (L29P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2j37_5 2go5_5 3izr_c
Probab=23.87 E-value=1.7e+02 Score=25.56 Aligned_cols=27 Identities=41% Similarity=0.420 Sum_probs=21.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhh
Q 010738 118 KSIGTMKKELAELQEDLAQAHRQVHIS 144 (502)
Q Consensus 118 ~~~~~~~~~~~~lq~~~~~ah~~~~~s 144 (502)
+|...|.++|.+|.+||..-.-|-.+.
T Consensus 14 ~s~eEL~~~L~eLK~ELf~LRfq~atg 40 (124)
T 3iz5_c 14 KSKDDLTKQLAELKTELGQLRIQKVAS 40 (124)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 568889999999999988776665543
No 79
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=23.80 E-value=2.7e+02 Score=21.99 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=10.1
Q ss_pred HHhhHHHHH--HHHhhhhhccccccc
Q 010738 151 ALDKLAYME--ALVNDRLLQDRHTSG 174 (502)
Q Consensus 151 ~l~~~~~me--~l~~~~~l~~~~~a~ 174 (502)
-|+-...|+ =..=++||.|.....
T Consensus 38 LlniKl~Le~EIatYRkLLEGEe~Rl 63 (74)
T 2xv5_A 38 LLDIKLALDMEIHAYRKLLEGEEERL 63 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 344444443 234478888765443
No 80
>2h8b_A Insulin-like 3; insulin/relaxin suparfamily fold, hormone/growth factor complex; NMR {Synthetic} PDB: 2k6t_A 2k6u_A
Probab=23.57 E-value=14 Score=23.72 Aligned_cols=8 Identities=50% Similarity=0.858 Sum_probs=6.5
Q ss_pred cchhhHHH
Q 010738 92 ARQDVLTI 99 (502)
Q Consensus 92 ~~~d~~~~ 99 (502)
+||||||+
T Consensus 16 t~QDLL~l 23 (26)
T 2h8b_A 16 TQQDLLTL 23 (26)
T ss_dssp CHHHHHTT
T ss_pred cHHHHHhh
Confidence 79999874
No 81
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=22.99 E-value=1.4e+02 Score=29.03 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHH
Q 010738 126 ELAELQEDLAQAHRQVHISEARVA 149 (502)
Q Consensus 126 ~~~~lq~~~~~ah~~~~~s~~rv~ 149 (502)
+|+.++.+|.+|..++...++++.
T Consensus 70 ~~~~~~a~l~~~~a~l~~a~~~~~ 93 (341)
T 3fpp_A 70 QIKEVEATLMELRAQRQQAEAELK 93 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444433344333
No 82
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=22.73 E-value=2.8e+02 Score=24.60 Aligned_cols=59 Identities=22% Similarity=0.280 Sum_probs=38.0
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHhhHHHHH
Q 010738 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISE---ARVATALDKLAYME 159 (502)
Q Consensus 101 ~~~~~v~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~~s~---~rv~~~l~~~~~me 159 (502)
+-..||-..-.--.--+|-+++||-++..+|+-+.+|..++..+- ..-|-+..|+-+||
T Consensus 43 EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDiRKLrELE 104 (167)
T 4gkw_A 43 EEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMRKLGELE 104 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhHHHHHHHH
Confidence 334444333333333467789999999999999999988876542 22334566777765
No 83
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=22.64 E-value=1.7e+02 Score=23.24 Aligned_cols=18 Identities=6% Similarity=0.250 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 010738 121 GTMKKELAELQEDLAQAH 138 (502)
Q Consensus 121 ~~~~~~~~~lq~~~~~ah 138 (502)
..|.++|..+|++++++.
T Consensus 16 eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 16 EELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466677777777777765
No 84
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=22.62 E-value=2.6e+02 Score=22.14 Aligned_cols=54 Identities=9% Similarity=0.055 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhChhhhhccc--------hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 010738 100 MLLHEKVVEVLNPLARDYKS--------IGTMKKELAELQEDLAQAHRQVHISEARVATALD 153 (502)
Q Consensus 100 ~~~~~~v~~~l~~~~~~~~~--------~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~ 153 (502)
+..|...++.++..+.+..+ ...++++|..|++.+.+-...+.-=..++..+|.
T Consensus 52 i~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~Le~aL~ 113 (119)
T 3uun_A 52 LTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECLRVASMEKQSNLHRVLM 113 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777776665532 2246666666666666555555554555555544
No 85
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=22.47 E-value=1.6e+02 Score=29.65 Aligned_cols=41 Identities=7% Similarity=0.023 Sum_probs=25.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHH
Q 010738 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEA 160 (502)
Q Consensus 120 ~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~me~ 160 (502)
+..|.+||..|+..+..+..+++..++.+.+.-.|+.+|+.
T Consensus 7 ~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~ 47 (323)
T 1lwu_C 7 VQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQ 47 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666666666666666666654
No 86
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=22.43 E-value=1.5e+02 Score=22.92 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=29.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHhhHHHHHHHHh
Q 010738 118 KSIGTMKKELAELQEDLAQAHRQVHISE----ARVATALDKLAYMEALVN 163 (502)
Q Consensus 118 ~~~~~~~~~~~~lq~~~~~ah~~~~~s~----~rv~~~l~~~~~me~l~~ 163 (502)
+|...|.++|.+|..||..-.-|-.+.+ +|+...-...|++....+
T Consensus 9 ~s~~EL~~~l~elk~ELf~LR~q~atgql~n~~~ir~vRr~IARi~Tvl~ 58 (67)
T 2zjr_V 9 LQATDFAKEIDARKKELMELRFQAAAGQLAQPHRVRQLRREVAQLNTVKA 58 (67)
T ss_dssp SCHHHHHHHHHTHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999887766655432 233344444444444444
No 87
>3g80_A Protein B2; RNA-binding, viral protein, suppressor of RNAI, RNA interference; 2.50A {Nodamura virus}
Probab=21.92 E-value=1.9e+02 Score=23.90 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHH
Q 010738 99 IMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVH 142 (502)
Q Consensus 99 ~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~~ 142 (502)
|..+-.+|+++.+.+. +. =...+|+|..+++=|+++|+.+-
T Consensus 37 l~qv~q~~v~ai~sl~--~q-DpnV~kDLdn~~acL~k~~~t~~ 77 (97)
T 3g80_A 37 LEQLAQETQATIQTLM--IA-DPNVNKDLRAFCEFLTVQHQRAY 77 (97)
T ss_dssp HHHHHHHHHHHHHTCC--CC-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc--cc-CchHHHHHHHHHHHHHHHHHHHH
Confidence 4455668888888887 33 27899999999999999998764
No 88
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=21.75 E-value=1.7e+02 Score=19.40 Aligned_cols=26 Identities=8% Similarity=0.225 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHH
Q 010738 121 GTMKKELAELQEDLAQAHRQVHISEA 146 (502)
Q Consensus 121 ~~~~~~~~~lq~~~~~ah~~~~~s~~ 146 (502)
..|.+++..||.-+++-+.++-..|.
T Consensus 2 srlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777666666555544443
No 89
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=21.75 E-value=91 Score=21.34 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=15.5
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHH
Q 010738 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQE 132 (502)
Q Consensus 101 ~~~~~v~~~l~~~~~~~~~~~~~~~~~~~lq~ 132 (502)
.+-+||+|+++.. .+|..|++.|++
T Consensus 5 QledKvEel~~~~-------~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 5 QVADKLEEVASKL-------YHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-------HHHHHHHHHHHH
Confidence 4567888887653 355555555554
No 90
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=21.57 E-value=2.4e+02 Score=22.29 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHH
Q 010738 124 KKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (502)
Q Consensus 124 ~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~ 157 (502)
..++..||.-+..-..++-.++.|+.++..||..
T Consensus 40 E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 40 EDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433
No 91
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=21.55 E-value=2.4e+02 Score=23.99 Aligned_cols=47 Identities=17% Similarity=0.221 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHhhhh
Q 010738 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRL 166 (502)
Q Consensus 120 ~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~~me~l~~~~~ 166 (502)
+.+|...+...+.++..+..++...+..+..+-.++.-||.|..+..
T Consensus 76 i~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~L~er~~ 122 (150)
T 3ajw_A 76 IQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQDRQT 122 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666666666655555555555554433
No 92
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=21.46 E-value=2.4e+02 Score=25.23 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=12.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 010738 120 IGTMKKELAELQEDLAQAHRQVHISEARVA 149 (502)
Q Consensus 120 ~~~~~~~~~~lq~~~~~ah~~~~~s~~rv~ 149 (502)
+..++.++..++.++..+..++...+..+.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (284)
T 1c1g_A 57 LDKYSEALKDAQEKLELAEKKATDAEADVA 86 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443333333
No 93
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=21.15 E-value=2.2e+02 Score=21.55 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHhhH
Q 010738 120 IGTMKKELAELQEDLAQ---AHRQVHISEARVATALDKL 155 (502)
Q Consensus 120 ~~~~~~~~~~lq~~~~~---ah~~~~~s~~rv~~~l~~~ 155 (502)
|=.||.|+.+||.|..+ +-...+.+..|++..+.|+
T Consensus 12 VYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999987654 3344455555555555544
No 94
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=20.81 E-value=1.8e+02 Score=38.19 Aligned_cols=36 Identities=14% Similarity=0.247 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Q 010738 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLA 156 (502)
Q Consensus 121 ~~~~~~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~ 156 (502)
.=+|++|+.++++|.+|..++...++.+..--+|++
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~ 2045 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIA 2045 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555544443333333
No 95
>1ek9_A Outer membrane protein TOLC; integral membrane protein, alpha helical barrel, beta barrel; 2.10A {Escherichia coli} SCOP: f.5.1.1 PDB: 1tqq_A 2vde_A 2vdd_A 2wmz_A* 2xmn_A*
Probab=20.62 E-value=1.3e+02 Score=29.66 Aligned_cols=31 Identities=6% Similarity=0.167 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Q 010738 126 ELAELQEDLAQAHRQVHISEARVATALDKLA 156 (502)
Q Consensus 126 ~~~~lq~~~~~ah~~~~~s~~rv~~~l~~~~ 156 (502)
++...+-+++++..++...+..+..+...|.
T Consensus 153 d~~~a~~~~~~~~~~l~~a~~~~~~a~~~L~ 183 (428)
T 1ek9_A 153 DVQNARAQYDTVLANELTARNNLDNAVEQLR 183 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444443333333
No 96
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=20.07 E-value=1.3e+02 Score=27.75 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHH
Q 010738 99 IMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQV 141 (502)
Q Consensus 99 ~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~lq~~~~~ah~~~ 141 (502)
|...+.+.-+.+..-.-|...|..|-+|++.||.++...+.+.
T Consensus 94 l~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~ 136 (175)
T 3lay_A 94 LISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKR 136 (175)
T ss_dssp HHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666655555566668888888888888777765443
Done!